BLASTP 2.2.22 [Sep-27-2009] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Reference for compositional score matrix adjustment: Altschul, Stephen F., John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis, Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109. Reference for composition-based statistics starting in round 2: Schaffer, Alejandro A., L. Aravind, Thomas L. Madden, Sergei Shavirin, John L. Spouge, Yuri I. Wolf, Eugene V. Koonin, and Stephen F. Altschul (2001), "Improving the accuracy of PSI-BLAST protein database searches with composition-based statistics and other refinements", Nucleic Acids Res. 29:2994-3005. Query= gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] (385 letters) Database: nr 14,124,377 sequences; 4,842,793,630 total letters Searching..................................................done Results from round 1 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040131|gb|ACT56927.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 783 bits (2022), Expect = 0.0, Method: Compositional matrix adjust. Identities = 385/385 (100%), Positives = 385/385 (100%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS Sbjct: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS Sbjct: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR Sbjct: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR Sbjct: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD Sbjct: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR Sbjct: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 GKDKDSKNNKDNKVNAFYVLMPMRI Sbjct: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 >gi|315122098|ref|YP_004062587.1| DNA polymerase III subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495500|gb|ADR52099.1| DNA polymerase III subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 370 Score = 544 bits (1401), Expect = e-152, Method: Compositional matrix adjust. Identities = 281/386 (72%), Positives = 321/386 (83%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I VERS+ILE L H CRIIER+ TIPV+CHV LQ DG L++KASGPEIEIT IPA Sbjct: 1 MEIIVERSNILEPLNHVCRIIERRTTIPVACHVFLQTIDGSLKMKASGPEIEITEVIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++V GS TVSAHLLYDIVRK +G++I F K + GTEV + GDS FYLQSF ESEFP+ Sbjct: 61 INVGGSATVSAHLLYDIVRKFPEGSEILFSKSDAQGTEVKVVSGDSQFYLQSFSESEFPN 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 KEE+Y YSFEL SSVLK L+ERTHFAMATEEIRYYLNGIFFHINEED LCAVATDGHR Sbjct: 121 IKEEDYEYSFELESSVLKILIERTHFAMATEEIRYYLNGIFFHINEEDSTLCAVATDGHR 180 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 LAVA+V++ IAKMPSIIVPRKAVGEI +I+S+ K SVK+S+SESRIHLNI LSMS+ Sbjct: 181 LAVAKVNV--PIAKMPSIIVPRKAVGEIQKIISTVKFLSVKISISESRIHLNIGRLSMSI 238 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDGEFP+YQNVIP +NDK LRVNC++LRQAVDRVS +SSVR QAVKLSLSS+KLCMTV Sbjct: 239 RLIDGEFPHYQNVIPHNNDKVLRVNCSSLRQAVDRVSTISSVRNQAVKLSLSSEKLCMTV 298 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DNP+MGKAIE ++V Y++CPMDICFNYKYLLEII NIS DD+VVFRLDSS+SS I Sbjct: 299 DNPEMGKAIEYLDVNYHDCPMDICFNYKYLLEIIGNIS-----DDDVVFRLDSSSSSALI 353 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +G + NKD AFYVLMPMRI Sbjct: 354 QGFE-----NKD----AFYVLMPMRI 370 >gi|209551896|ref|YP_002283813.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537652|gb|ACI57587.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 372 Score = 363 bits (932), Expect = 3e-98, Method: Compositional matrix adjust. Identities = 187/387 (48%), Positives = 260/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ ++ G + + G S F LQ PES+FP Sbjct: 61 VEQSGATTVPAHLLYDIVRKLPDGSEVLLATSSD-GGSMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + +V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|86355975|ref|YP_467867.1| DNA polymerase III subunit beta [Rhizobium etli CFN 42] gi|86280077|gb|ABC89140.1| DNA polymerase III, beta chain protein [Rhizobium etli CFN 42] Length = 372 Score = 362 bits (929), Expect = 5e-98, Method: Compositional matrix adjust. Identities = 186/387 (48%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PA+ Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ E G + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGAEVLLATSTE-GGSMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDSMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|116250102|ref|YP_765940.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|115254750|emb|CAK05824.1| putative DNA polymerase III, beta chain [Rhizobium leguminosarum bv. viciae 3841] Length = 372 Score = 362 bits (929), Expect = 6e-98, Method: Compositional matrix adjust. Identities = 187/387 (48%), Positives = 260/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ ++ G + + G S F LQ PES+FP Sbjct: 61 VEQPGATTVPAHLLYDIVRKLSDGSEVLLATSSD-GGSMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E + LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|218509914|ref|ZP_03507792.1| DNA polymerase III subunit beta [Rhizobium etli Brasil 5] Length = 372 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/387 (47%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTD-GGSMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|241207273|ref|YP_002978369.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861163|gb|ACS58830.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 372 Score = 361 bits (927), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 187/387 (48%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G + + G S F LQ PES+FP Sbjct: 61 VEQPGATTVPAHLLYDIVRKLSDGSEV-LLATSPDGGAMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E + LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|327192029|gb|EGE59010.1| DNA polymerase III subunit beta [Rhizobium etli CNPAF512] Length = 372 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/387 (47%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTD-GGSMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|190889986|ref|YP_001976528.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652] gi|190695265|gb|ACE89350.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652] Length = 372 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 185/387 (47%), Positives = 260/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTD-GGSMTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|222084599|ref|YP_002543128.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84] gi|221722047|gb|ACM25203.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84] Length = 372 Score = 361 bits (926), Expect = 1e-97, Method: Compositional matrix adjust. Identities = 187/387 (48%), Positives = 257/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A L++KA+ ++EIT A PA+ Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGANLDMKATDLDLEITEATPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N G + ++ G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEV-LLATNPDGGSMTVASGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH +E DLKL AVATDG Sbjct: 120 LTAGSFSHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESEGDLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V + MP II+PRK VGE+ +++ S D V V +S+++I I S+ M+ Sbjct: 180 HRLARADVSAPSGSEGMPGIIIPRKTVGELQKLVDSPDVIVTVEVSDAKIRTTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP +NDKE+RV+C + QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTNNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALSDGQLLLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S D +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----DAAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|227824176|ref|YP_002828149.1| DNA polymerase III subunit beta [Sinorhizobium fredii NGR234] gi|227343178|gb|ACP27396.1| DNA polymerase III, beta subunit [Sinorhizobium fredii NGR234] Length = 372 Score = 358 bits (918), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 182/387 (47%), Positives = 257/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ E GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAE-GTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF L ++ LK L++RT FA++TEE RYYLNGIF H N+ +LKL AVATDG Sbjct: 120 LTAGSFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVENKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+++ A MP II+PRK V E+ ++L + D V +S+++I L I S+ M+ Sbjct: 180 HRLARADIEAPAGSEGMPGIIIPRKTVSELQKLLDTPDVVVTAEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALTDGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A+E + V Y P++I FN KYLL+I + ++ +E VF L S Sbjct: 300 VNNPDSGSAMEELPVGYENDPLEIGFNAKYLLDI-----TAQLTGNEAVFMLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372 >gi|307301232|ref|ZP_07580994.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C] gi|307317903|ref|ZP_07597340.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] gi|306896305|gb|EFN27054.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] gi|306903688|gb|EFN34275.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C] Length = 372 Score = 357 bits (917), Expect = 1e-96, Method: Compositional matrix adjust. Identities = 185/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ E GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAE-GTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF L + LK L++RT FA++TEE RYYLNGIF H E DLKL AVATDG Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK V E+ ++L S D V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP SNDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN KYLL+I + ++ E VF L S Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDI-----TGQLTGSEAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +A YVLMPMR+ Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372 >gi|15964088|ref|NP_384441.1| DNA polymerase III subunit beta [Sinorhizobium meliloti 1021] gi|15073264|emb|CAC41772.1| Probable DNA polymerase III, beta chain [Sinorhizobium meliloti 1021] Length = 372 Score = 357 bits (916), Expect = 2e-96, Method: Compositional matrix adjust. Identities = 185/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ E GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAE-GTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF L + LK L++RT FA++TEE RYYLNGIF H E DLKL AVATDG Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK V E+ ++L S D V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP SNDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN KYLL+I + ++ E VF L S Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDI-----TGQLTGGEAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +A YVLMPMR+ Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372 >gi|163757766|ref|ZP_02164855.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43] gi|162285268|gb|EDQ35550.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43] Length = 372 Score = 355 bits (912), Expect = 6e-96, Method: Compositional matrix adjust. Identities = 181/387 (46%), Positives = 253/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLL+A L++KA+ ++EIT A PA Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGATLDMKATDLDLEITEATPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS TV AHLLYDIVRKL DG+++ N G + ++ G S F LQ PES+FP Sbjct: 61 IEQAGSTTVPAHLLYDIVRKLSDGSEV-MLATNPDGASMTVASGRSKFTLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + ++F L ++ LK L++RT FA++TEE RYYLNGIF H +E LKL AVATDG Sbjct: 120 LTAGAFSHTFRLPATELKMLIDRTQFAISTEETRYYLNGIFVHTIESEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGEI +++ + D +V V +S+++I I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGEIQKLVDNPDLTVTVEVSDAKIRFTIGSVVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL V+C QAVDRVS +SS R +AVKL+++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKELTVDCQTFAQAVDRVSTISSERGRAVKLAIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ P++I FN KYLL+I + +S + VF L S Sbjct: 300 VNNPDSGSATEELAVGYDRDPIEIGFNAKYLLDITNQLSG-----TDAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372 >gi|325291735|ref|YP_004277599.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3] gi|325059588|gb|ADY63279.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3] Length = 378 Score = 353 bits (906), Expect = 2e-95, Method: Compositional matrix adjust. Identities = 179/387 (46%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PA Sbjct: 7 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLY+IVRKL DG+++ N G+ + ++ G S F LQ PE++FP Sbjct: 67 VEQAGATTVPAHLLYEIVRKLPDGSEV-LLATNPDGSTMTVASGRSKFSLQCLPETDFPD 125 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH E DLKL AVATDG Sbjct: 126 LTAGTFSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDG 185 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ ++ Sbjct: 186 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELDVTVEVSDAKIRLTIGSVVLT 245 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+C +AVDRVS +SS R +AVKL+L++ +L +T Sbjct: 246 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTNGQLTLT 305 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S ++ +F L + S Sbjct: 306 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 360 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 361 VRDTAGD---------DALYVLMPMRV 378 >gi|150398727|ref|YP_001329194.1| DNA polymerase III subunit beta [Sinorhizobium medicae WSM419] gi|150030242|gb|ABR62359.1| DNA polymerase III, beta subunit [Sinorhizobium medicae WSM419] Length = 372 Score = 353 bits (905), Expect = 4e-95, Method: Compositional matrix adjust. Identities = 183/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A A Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATQAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEV-LLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF L ++ LK L++RT FA++TEE RYYLNGIF H E +LKL AVATDG Sbjct: 120 LTAGTFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK V E+ ++L + D V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDNPDVVVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP SNDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALTDGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN KYLL+I + ++ E VF L S Sbjct: 300 VNNPDSGSATEEVPVGYESDPLEIGFNAKYLLDI-----TAQLTGSEAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372 >gi|159184247|ref|NP_353331.2| DNA polymerase III subunit beta [Agrobacterium tumefaciens str. C58] gi|159139574|gb|AAK86116.2| DNA polymerase III, beta chain [Agrobacterium tumefaciens str. C58] Length = 372 Score = 349 bits (896), Expect = 4e-94, Method: Compositional matrix adjust. Identities = 178/387 (45%), Positives = 258/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLY+IVRKL DG+++ N G+ + ++ G S F LQ PE++FP Sbjct: 61 VEQAGATTVPAHLLYEIVRKLPDGSEV-LLATNPDGSSMTVASGRSKFSLQCLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDG Sbjct: 120 LTAGTFSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+C +AVDRVS +SS R +AVKL+L+ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S ++ +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372 >gi|218673040|ref|ZP_03522709.1| DNA polymerase III subunit beta [Rhizobium etli GR56] Length = 361 Score = 347 bits (889), Expect = 2e-93, Method: Compositional matrix adjust. Identities = 179/374 (47%), Positives = 248/374 (66%), Gaps = 17/374 (4%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PASV+ G+ TV AHL Sbjct: 3 LNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAGATTVPAHL 62 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 LYDIVRKL DG+++ + G + + G S F LQ PES+FP + +SF+L Sbjct: 63 LYDIVRKLSDGSEV-LLATSPDGGSMTVQSGRSKFSLQCLPESDFPDLTAGTFTHSFKLK 121 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDGHRLAVAEVDIVAQ 191 +S LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDGHRLA A+VD + Sbjct: 122 ASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLARADVDAPSG 181 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ +LIDG FP+YQ Sbjct: 182 SEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDYQR 241 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311 VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +TV+NPD G A E + Sbjct: 242 VIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTVNNPDSGSATEEV 301 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 V Y+ M+I FN KYLL+I +S +E +F L + S IR D Sbjct: 302 AVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTLIRDTAGD------ 350 Query: 372 NKVNAFYVLMPMRI 385 +A YVLMPMR+ Sbjct: 351 ---DALYVLMPMRV 361 >gi|110632364|ref|YP_672572.1| DNA polymerase III subunit beta [Mesorhizobium sp. BNC1] gi|110283348|gb|ABG61407.1| DNA polymerase III, beta subunit [Chelativorans sp. BNC1] Length = 372 Score = 345 bits (886), Expect = 5e-93, Method: Compositional matrix adjust. Identities = 180/387 (46%), Positives = 255/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ERS++L+ LGH R++ER+NTIP+ +VLL A+ LE+KA+ ++E+T A PAS Sbjct: 1 MRVVLERSNLLKSLGHVHRVVERRNTIPILSNVLLSADGASLEMKATDLDLEMTEAAPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ K +E G +++ G S F LQ P+++FP+ Sbjct: 61 VEQGGATTVPAHLLYDIVRKLPDGAEV-MLKVDENGQTMSVISGRSTFRLQCLPKADFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 ++ + F + S+VL++LVE+T FA++TEE RYYLNGIF H E D LKL AVATDG Sbjct: 120 LTAGQFSHIFRMESAVLRSLVEKTQFAISTEETRYYLNGIFLHTLESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ A MP IIVPRK VGE+ +++ D +V V LS+++I I S+ ++ Sbjct: 180 HRLARAEIEAPAGSEGMPGIIVPRKTVGELQKLVDDPDVAVTVELSDTKIRFTIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL ++ + AVDRVS +SS R +AVKLS+S ++ T Sbjct: 240 SKLIDGTFPDYQRVIPVGNDKELLIDRQSFSAAVDRVSTVSSERGRAVKLSISDGQVTFT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + YN P++I FN +YLL++ +S E F L + S Sbjct: 300 VNNPDSGSATEEIPAGYNADPIEIGFNARYLLDVAAQLSG-----SEAKFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ D +V YVLMPMR+ Sbjct: 355 I-------QDTSDERV--LYVLMPMRV 372 >gi|222147282|ref|YP_002548239.1| DNA polymerase III subunit beta [Agrobacterium vitis S4] gi|221734272|gb|ACM35235.1| DNA polymerase III beta subunit [Agrobacterium vitis S4] Length = 412 Score = 342 bits (878), Expect = 4e-92, Method: Compositional matrix adjust. Identities = 178/387 (45%), Positives = 251/387 (64%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A L +KA+ ++E+T A PA+ Sbjct: 41 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRAEGQSLSMKATDLDLEVTEATPAN 100 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TV AHLLY+IVRKL DGA++ N G + ++ G S F LQ PE +FP Sbjct: 101 IEQAGATTVPAHLLYEIVRKLSDGAEV-LLSTNPDGASMTVASGRSKFSLQCLPEQDFPD 159 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF+L +S LK L++RT FA++TEE RYYLNGI+ H E D LKL AVATDG Sbjct: 160 LTTGSFSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIYLHTIEADGKLKLRAVATDG 219 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK VGE+ +++ + D V + +S+++I NI + M+ Sbjct: 220 HRLARADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLIVALEVSDAKIRFNIGEIVMT 279 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP +NDKE+RV+C +AVDRVS +SS R +AVKL++ L +T Sbjct: 280 SKLIDGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLAIGDGHLMLT 339 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y M+I FN KYLL+I +S +E +F L + S Sbjct: 340 VNNPDSGSATEEVAVGYESDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 394 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 395 IRDTAGD---------DALYVLMPMRV 412 >gi|118590459|ref|ZP_01547861.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] gi|118436922|gb|EAV43561.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] Length = 372 Score = 339 bits (870), Expect = 4e-91, Method: Compositional matrix adjust. Identities = 176/388 (45%), Positives = 256/388 (65%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A+ G + +KA+ ++EI ++PA Sbjct: 1 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGAINLKATDLDLEIVESVPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +++ G+ TV AH+ YDIVRKL +G+Q+ ++ T + I G S F LQ PE++FP Sbjct: 61 IEMPGATTVPAHMFYDIVRKLPEGSQVVLETTSDNAT-LEIRAGRSKFTLQMLPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 ++ +SF L + ++ L++ T FA++TEE RYYLNGI+ H + L+ AVATDG Sbjct: 120 LTAGDFSHSFSLTGADIRKLIDATQFAISTEETRYYLNGIYLHTVDAGSGLQFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV + A MP IIVPRK VGEI ++L S ++SV+V LS+++I L S+ ++ Sbjct: 180 HRLAQAEVPAPSGSAGMPGIIVPRKTVGEIQKLLESPEASVQVELSDTKIRLTTGSVILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKE+RV+ ++AVDRVS +SS R +AVKLSL+ L +T Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLTEGHLVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ P+DI FN +YLL+I + +SS D +FRL S S Sbjct: 300 VNNPDSGSATEELAVEYDAEPLDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385 I +DN V + +VLMPMR+ Sbjct: 355 I----------QDNTVDDCLFVLMPMRV 372 >gi|86747129|ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris HaA2] gi|86570157|gb|ABD04714.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris HaA2] Length = 372 Score = 339 bits (869), Expect = 5e-91, Method: Compositional matrix adjust. Identities = 178/387 (45%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF L +S +K L++RT FA++TEE RYYLNGI+ H + +D KL AVATDG Sbjct: 120 LAAGEMSHSFSLTASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKDAKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ A A MP +IVPRK VGE+ R++ D+ + + LS +I I ++ ++ Sbjct: 180 HRLAQVDLTQPAGAAGMPGVIVPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I EV V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +DK NA YVLMPMR+ Sbjct: 355 IQDRDKK---------NALYVLMPMRV 372 >gi|307942711|ref|ZP_07658056.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] gi|307773507|gb|EFO32723.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] Length = 372 Score = 333 bits (855), Expect = 2e-89, Method: Compositional matrix adjust. Identities = 175/388 (45%), Positives = 247/388 (63%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A+ G L +KA+ ++EI +IPA Sbjct: 1 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGSLNLKATDLDLEIVESIPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ G+ TV AH+ YDIVRKL DG+Q+ + T + I G S F LQ PES+FP Sbjct: 61 VEMGGATTVPAHMFYDIVRKLPDGSQVVLETTGDNST-LEIRAGRSRFTLQMLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 ++ + F L + ++ L++ T FA++TEE RYYLNGI+ H + AVATDG Sbjct: 120 LTAGDFSHGFALTAGDIRKLIDTTQFAISTEETRYYLNGIYLHTVNTPSGERFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV MP IIVPRK VGEI ++L D++V++ LSE++I + ++ ++ Sbjct: 180 HRLAQAEVTAPNGSHGMPGIIVPRKTVGEIQKLLEEPDANVQIELSETKIRITTGAVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKE+RV+ ++AVDRVS +SS R +AVKLSLS ++ +T Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLSDGRMVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y MDI FN +YLL+I + +SS D +FRL S S Sbjct: 300 VNNPDSGSATEELAVEYTSDAMDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385 I +DN V + +VLMPMR+ Sbjct: 355 I----------QDNTVDDCLFVLMPMRV 372 >gi|115522032|ref|YP_778943.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisA53] gi|115515979|gb|ABJ03963.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisA53] Length = 372 Score = 332 bits (851), Expect = 6e-89, Method: Compositional matrix adjust. Identities = 174/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A G L +KA+ ++E+T ++PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAEKGRLSLKATDLDLEVTESLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PE++FP Sbjct: 61 TATPGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 E +SF L +S +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMTHSFALPASDVKRLIDRTQFAISTEETRYYLNGIYLHSAGSAVAATLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + A MP +IVPRK VGE+ R++ + SV + LS ++I I + ++ Sbjct: 180 HRLAQLDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDSEVSVGIELSTNKIRFTIGDVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ T+ AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKTDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D+D+K A YVLMPMR+ Sbjct: 355 I--QDRDAK-------GALYVLMPMRV 372 >gi|304392440|ref|ZP_07374381.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130] gi|303295544|gb|EFL89903.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130] Length = 371 Score = 330 bits (845), Expect = 3e-88, Method: Compositional matrix adjust. Identities = 173/387 (44%), Positives = 245/387 (63%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ER+++L+ L H R++ER+NTIP+ +VLL+A DG L +KA+ ++E+T A Sbjct: 1 MRLTLERANLLKSLNHVQRVVERRNTIPILSNVLLKAEDGGLMLKATDLDLEVTEKTTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSAH LYDIVRKL DG+Q+ + G + + G S F LQ PES+FP Sbjct: 61 VEQSGATTVSAHTLYDIVRKLPDGSQVLLAVDESNG--LLVRAGRSQFRLQMLPESDFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ ++F + + K L++RT FA++TEE RYYLNGI+ H E D K L AVATDG Sbjct: 119 LTAAEFTHTFRMGCADFKALIDRTQFAISTEETRYYLNGIYLHAVEADGKEMLRAVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+ + + MP IIVPRK VGEI ++L D+ V V LS+S+I + + ++ Sbjct: 179 HRLAQAQTEAPDGASGMPGIIVPRKTVGEIQKLLEDPDAFVTVELSDSKIRFTVGEVVLT 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP N KEL ++ AVDRVS ++S R +AVKLS+S +L ++ Sbjct: 239 SKLIDGTFPDYNRVIPSGNTKELLLDRATFSSAVDRVSTIASDRGRAVKLSISDGQLTLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y++ MDI FN +YLL+I + +S+ +E F L + S Sbjct: 299 VNNPDSGSAEEELAVGYSDDDMDIGFNSRYLLDITNQLSA-----EETTFMLADAGSPTL 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR K +D A YVLMPMR+ Sbjct: 354 IREKGQD---------GALYVLMPMRV 371 >gi|90420503|ref|ZP_01228410.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335231|gb|EAS48984.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 374 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 175/389 (44%), Positives = 249/389 (64%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ERS++L+ L H R++ER+NTIP+ +VLL+ L +KA+ ++EIT + PA+ Sbjct: 1 MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLKTEGEGLRLKATDLDLEITESAPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV AHLLYDIVRKL DGA++S E GT++ +S G SNF LQ PES+FP Sbjct: 61 GEQEGATTVPAHLLYDIVRKLPDGAEVSLATNAE-GTQMTVSSGRSNFRLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 ++F+L ++ L L+ERT FA++TEE RYYLNGI+ H E D L+L AVATDG Sbjct: 120 ITAGTLSHAFKLKAAELGRLIERTQFAISTEETRYYLNGIYLHTIEADGDLQLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLS 236 HRLA A+ A MP II+PRK VGE+ ++L S+ ++ + V LS+++I I ++ Sbjct: 180 HRLARADQKAPAGSEGMPGIIIPRKTVGELQKLLGDSNDEAEISVELSDAKIRFTIGAVV 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M+ +LIDG FP+YQ VIP +NDK L ++ AVDRVS +SS R +AVKL+++ +L Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKALTLDRQTFSAAVDRVSTISSERGRAVKLAVADSQLV 299 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +TV++PD G A E + V Y+ ++I FN KYLL+I + +S DE VF L S Sbjct: 300 LTVNSPDSGTATEELAVGYDSDEIEIGFNAKYLLDITNQLSG-----DETVFMLADPGSP 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D+ YVLMPMR+ Sbjct: 355 TLIKDGGDDA---------TLYVLMPMRV 374 >gi|254502919|ref|ZP_05115070.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11] gi|222438990|gb|EEE45669.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11] Length = 375 Score = 329 bits (844), Expect = 4e-88, Method: Compositional matrix adjust. Identities = 167/388 (43%), Positives = 252/388 (64%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A+ G L +KA+ ++EI +PA Sbjct: 4 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGALNLKATDLDLEIVETVPAM 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +++ G+ TV AH+ +DIVRKL +G+Q+ + T + I G S F LQ PE++FP Sbjct: 64 IEMPGATTVPAHMFFDIVRKLPEGSQVVLETTGD-DTTLEIRAGRSKFTLQMLPETDFPD 122 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 ++ + F L++S ++ L++ T FA++TEE RYYLNGI+ H + + AVATDG Sbjct: 123 LTAGDFSHGFTLSASDIRKLIDTTQFAISTEETRYYLNGIYLHTVDAANGQQFRAVATDG 182 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV + + MP IIVPRK VGEI ++L + ++ V++ LS+++I + +++ ++ Sbjct: 183 HRLAQAEVSAPSGSSGMPGIIVPRKTVGEIQKLLENPEADVQIELSDTKIRITTDTVVLT 242 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKE+RV+ ++AVDRVS +SS R +AVKL+L +L +T Sbjct: 243 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLALGDGRLVLT 302 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN +YLL+I + +SS D +FRL S S Sbjct: 303 VNNPDSGSATEELAVEYESDPLEIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 357 Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385 I +DN V + +VLMPMR+ Sbjct: 358 I----------QDNTVDDCLFVLMPMRV 375 >gi|319779751|ref|YP_004139227.1| DNA polymerase III, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165639|gb|ADV09177.1| DNA polymerase III, beta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 372 Score = 328 bits (841), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 170/387 (43%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ERS++L+ L H R++ER+NTIP+ +VLL A LE+KA+ ++E+T A PA Sbjct: 1 MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLGAEGASLEMKATDLDLEVTEATPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ K +E G + ++ G S+F LQ P+S+FP Sbjct: 61 VERGGATTVPAHLLYDIVRKLADGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + + F L S LK L+E+T FA++TEE RYYLNGI+ H +E LKL +VATDG Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+D A MP II+PRK V E+ +++ D +V LS+++I I S+ ++ Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + AVDRVS +SS R +AVKLS+S ++ + Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLIIDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E ++ Y+ P++I FN KYLL++ + ++ E F L + S Sbjct: 300 VNNPDSGSATEELSADYSSDPIEIGFNAKYLLDV-----AAQLTGTEAKFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ A YVLMPMR+ Sbjct: 355 IHDMADET---------ALYVLMPMRV 372 >gi|299133398|ref|ZP_07026593.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2] gi|298593535|gb|EFI53735.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2] Length = 372 Score = 328 bits (841), Expect = 9e-88, Method: Compositional matrix adjust. Identities = 168/387 (43%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A++ L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRADNARLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF L+++ +K L++RT FA++TEE RYYLNGI+ H + ++ L AVATDG Sbjct: 120 LAAGEMTHSFTLSAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGSGKEQTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +IVPRK VGE+ R++ ++ + + LS+ +I + ++ ++ Sbjct: 180 HRLAQFDLPLPKSAVGMPGVIVPRKTVGEVQRLIEDNEAEISIELSQGKIRFTLANVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +N+KEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELIVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I D V +L S Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----DAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ K N+D A YVLMPMR+ Sbjct: 355 VQ-----DKANRD----ALYVLMPMRV 372 >gi|154243960|ref|YP_001414918.1| DNA polymerase III subunit beta [Xanthobacter autotrophicus Py2] gi|154158045|gb|ABS65261.1| DNA polymerase III, beta subunit [Xanthobacter autotrophicus Py2] Length = 373 Score = 328 bits (841), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 167/388 (43%), Positives = 242/388 (62%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+++L+ L H R++ER+NTIP+ +VL++A LE+KA+ ++E+ ++PA Sbjct: 1 MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIKAGKNGLELKATDLDLEVVESVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+LYDIVRKL +GAQ+ E GT + + + F LQ+ PE++FP Sbjct: 61 TGQAGATTVPAHVLYDIVRKLPEGAQVQLEAGGERGT-LTVKASRARFSLQTLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE---DLKLCAVATD 177 E+ ++F++ + + LV++T FA++TEE RYYLNGI+ H+ E L AVATD Sbjct: 120 LAAGEFSHTFKVKGADFRRLVDKTQFAISTEETRYYLNGIYLHVTEGAGGKSMLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA AE++ A A +P +IVPRK V EI ++L K++ VSLS ++I + + S+ + Sbjct: 180 GHRLAQAELEAPAGAAGLPGVIVPRKTVAEIQKLLEDKEAEATVSLSTTKIRVQVGSIVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP NDK L V+ AVDRVS +SS R +AVKLSL+ K+ + Sbjct: 240 TSKLIDGTFPDYGRVIPQGNDKTLIVDKDEFAAAVDRVSTVSSERGRAVKLSLAEGKMTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E + V Y P+DI FN +YLL+I + D +L S Sbjct: 300 SVTNPDSGSATEELEVDYTAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R DS K +A YVLMPMR+ Sbjct: 355 LVR----DS-----TKTDALYVLMPMRV 373 >gi|261215133|ref|ZP_05929414.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya] gi|260916740|gb|EEX83601.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya] Length = 376 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|254694808|ref|ZP_05156636.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya] Length = 372 Score = 327 bits (839), Expect = 1e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372 >gi|256158692|ref|ZP_05456571.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1] gi|256254093|ref|ZP_05459629.1| DNA polymerase III subunit beta [Brucella ceti B1/94] gi|260169592|ref|ZP_05756403.1| DNA polymerase III subunit beta [Brucella sp. F5/99] Length = 372 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372 >gi|91974484|ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB5] gi|91680940|gb|ABE37242.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB5] Length = 372 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 174/387 (44%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+ +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF LA+S +K L++RT FA++TEE RYYLNGI+ H + + L AVATDG Sbjct: 120 LAAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ A + MP +IVPRK VGE+ R++ D+ + + LS +I I ++ ++ Sbjct: 180 HRLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I EV V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D+D+K NA YVLMPMR+ Sbjct: 355 I--QDRDTK-------NALYVLMPMRV 372 >gi|209883689|ref|YP_002287546.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5] gi|209871885|gb|ACI91681.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5] Length = 372 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 168/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAENAKLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF L ++ +K L++RT FA++TEE RYYLNGI+ H + + L AVATDG Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAAEQTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + A MP +IVPRK VGE+ R++ ++ + + LS+++I + ++ ++ Sbjct: 180 HRLAQFDLPLPKSAAGMPGVIVPRKTVGEVQRLIEDTEAEIAIELSQAKIRFTLANVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +N+KEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELVVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V +L S Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----EAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ K N+D A YVLMPMR+ Sbjct: 355 VQ-----DKANRD----ALYVLMPMRV 372 >gi|188579289|ref|YP_001922734.1| DNA polymerase III subunit beta [Methylobacterium populi BJ001] gi|179342787|gb|ACB78199.1| DNA polymerase III, beta subunit [Methylobacterium populi BJ001] Length = 373 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 173/388 (44%), Positives = 239/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+ D L++KA+ +IE+T + A Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGDNGLQLKATDLDIEVTETVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E +SF + +S LK L+E+T FA++TEE RYYLNGI+FH E + LKL AVATDG Sbjct: 120 LAAGELPHSFSIPASELKQLIEKTQFAISTEETRYYLNGIYFHTVEVEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237 HRLA E + MP IIVPRKAV EI +++ SV+V LS ++I L +++ Sbjct: 180 HRLARVETEAPEDSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL+++ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVAEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 LIQDRD---------GAPALYVLMPMRV 373 >gi|261221233|ref|ZP_05935514.1| DNA polymerase III subunit beta [Brucella ceti B1/94] gi|261759118|ref|ZP_06002827.1| DNA polymerase subunit III [Brucella sp. F5/99] gi|265997194|ref|ZP_06109751.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1] gi|260919817|gb|EEX86470.1| DNA polymerase III subunit beta [Brucella ceti B1/94] gi|261739102|gb|EEY27098.1| DNA polymerase subunit III [Brucella sp. F5/99] gi|262551662|gb|EEZ07652.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1] Length = 376 Score = 327 bits (839), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|189023270|ref|YP_001934038.1| DNA polymerase III subunit beta [Brucella abortus S19] gi|254696436|ref|ZP_05158264.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254731348|ref|ZP_05189926.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292] gi|189018842|gb|ACD71564.1| DNA polymerase III, beta chain [Brucella abortus S19] Length = 372 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372 >gi|260563085|ref|ZP_05833571.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M] gi|261218004|ref|ZP_05932285.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1] gi|261314778|ref|ZP_05953975.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10] gi|261316661|ref|ZP_05955858.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94] gi|261321146|ref|ZP_05960343.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1] gi|261324124|ref|ZP_05963321.1| DNA polymerase III subunit beta [Brucella neotomae 5K33] gi|261751326|ref|ZP_05995035.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513] gi|261755891|ref|ZP_05999600.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686] gi|265987733|ref|ZP_06100290.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1] gi|265992207|ref|ZP_06104764.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|265993947|ref|ZP_06106504.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265999708|ref|ZP_05467475.2| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9] gi|260153101|gb|EEW88193.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M] gi|260923093|gb|EEX89661.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1] gi|261293836|gb|EEX97332.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1] gi|261295884|gb|EEX99380.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94] gi|261300104|gb|EEY03601.1| DNA polymerase III subunit beta [Brucella neotomae 5K33] gi|261303804|gb|EEY07301.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10] gi|261741079|gb|EEY29005.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513] gi|261745644|gb|EEY33570.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686] gi|262764928|gb|EEZ10849.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str. Ether] gi|263003273|gb|EEZ15566.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263095428|gb|EEZ19029.1| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9] gi|264659930|gb|EEZ30191.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1] gi|326537731|gb|ADZ85946.1| DNA polymerase III, beta subunit [Brucella melitensis M5-90] Length = 376 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|328541626|ref|YP_004301735.1| DNA polymerase III, beta subunit [polymorphum gilvum SL003B-26A1] gi|326411378|gb|ADZ68441.1| DNA polymerase III, beta subunit [Polymorphum gilvum SL003B-26A1] Length = 372 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 166/388 (42%), Positives = 245/388 (63%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A G L++KA+ ++E+ +PA Sbjct: 1 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRAEHGALKLKATDLDLEVLETVPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G TV AH++YDIVRKL +G+Q+ + T + I G S F LQ PE++FP Sbjct: 61 IEAPGGTTVPAHMIYDIVRKLPEGSQVVLETTGDNAT-LEIRAGRSRFALQMLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + + F L++ ++ L++ T FA++TEE RYYLNGI+ H + K AVATDG Sbjct: 120 LTAGTFSHQFTLSAGAIRKLIDTTQFAISTEETRYYLNGIYLHTVDTPQGQKFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV A A MP IIVPRK VGEI ++L +++ V+V +S+++I + + ++ Sbjct: 180 HRLAQAEVPAPAGAAGMPGIIVPRKTVGEIQKLLEDREAEVQVEISDTKIRVTTGPVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKELRV+ R+AVDRVS +SS R +AVKL+LS +L + Sbjct: 240 SKLIDGTFPDYGRVIPQHNDKELRVDRDEFREAVDRVSTISSERGRAVKLALSEGRLVLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ P++I FN +YLL+I + ++ D +FRL S Sbjct: 300 VNNPDSGSATEELAVEYDSDPLEIGFNSRYLLDI-----AAQLTGDTALFRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385 + +DN + +VLMPMR+ Sbjct: 355 V----------QDNAAEDCLFVLMPMRV 372 >gi|260546287|ref|ZP_05822027.1| DNA polymerase subunit III [Brucella abortus NCTC 8038] gi|260759081|ref|ZP_05871429.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292] gi|260760807|ref|ZP_05873150.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260096394|gb|EEW80270.1| DNA polymerase subunit III [Brucella abortus NCTC 8038] gi|260669399|gb|EEX56339.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292] gi|260671239|gb|EEX58060.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str. 86/8/59] Length = 376 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|254700820|ref|ZP_05162648.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513] gi|254705187|ref|ZP_05167015.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686] gi|254707297|ref|ZP_05169125.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10] gi|254709164|ref|ZP_05170975.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94] gi|254713412|ref|ZP_05175223.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1] gi|254716231|ref|ZP_05178042.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1] gi|256030688|ref|ZP_05444302.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1] gi|256045792|ref|ZP_05448670.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256060147|ref|ZP_05450329.1| DNA polymerase III subunit beta [Brucella neotomae 5K33] gi|256112511|ref|ZP_05453432.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str. Ether] gi|326408013|gb|ADZ65078.1| DNA polymerase III, beta chain [Brucella melitensis M28] Length = 372 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372 >gi|13474647|ref|NP_106216.1| DNA polymerase III subunit beta [Mesorhizobium loti MAFF303099] gi|260461962|ref|ZP_05810207.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] gi|14025402|dbj|BAB52002.1| DNA polymerase III beta subunit [Mesorhizobium loti MAFF303099] gi|259032209|gb|EEW33475.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] Length = 372 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ERS++L+ L H R++ER+NTIP+ +VLL A LE+KA+ ++E+T A PA Sbjct: 1 MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLSAEGASLEMKATDLDLEVTEATPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ K +E G + ++ G S+F LQ P+S+FP Sbjct: 61 VERGGATTVPAHLLYDIVRKLSDGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + + F L S LK L+E+T FA++TEE RYYLNGI+ H +E LKL +VATDG Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+D A MP II+PRK V E+ +++ D +V LS+++I I S+ ++ Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + AVDRVS +SS R +AVKLS+S ++ + Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLILDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + Y+ P++I FN KYLL++ + ++ E F L + S Sbjct: 300 VNNPDSGSATEELAADYSSDPIEIGFNAKYLLDV-----AAQLTGTEAKFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ A YVLMPMR+ Sbjct: 355 IHDMADET---------ALYVLMPMRV 372 >gi|146337177|ref|YP_001202225.1| DNA polymerase III subunit beta [Bradyrhizobium sp. ORS278] gi|146189983|emb|CAL73975.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS278] Length = 372 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L ++A+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 E ++F + + +K+L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + A+MP +IVPRK VGE+ R++ DS +K+ LS+ +I + + ++ Sbjct: 180 HRLAQVDLPQPSGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I EV V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++DN+ NA YVLMPMR+ Sbjct: 355 IQ--------DRDNR-NALYVLMPMRV 372 >gi|254718226|ref|ZP_05180037.1| DNA polymerase III subunit beta [Brucella sp. 83/13] gi|306839966|ref|ZP_07472760.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653] gi|306404930|gb|EFM61215.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653] Length = 372 Score = 327 bits (838), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372 >gi|260567347|ref|ZP_05837817.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40] gi|260156865|gb|EEW91945.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40] Length = 376 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDI+RKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|265983182|ref|ZP_06095917.1| DNA polymerase III subunit beta [Brucella sp. 83/13] gi|264661774|gb|EEZ32035.1| DNA polymerase III subunit beta [Brucella sp. 83/13] Length = 376 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|225626553|ref|ZP_03784592.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo] gi|225618210|gb|EEH15253.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo] Length = 397 Score = 327 bits (837), Expect = 2e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397 >gi|170738369|ref|YP_001767024.1| DNA polymerase III subunit beta [Methylobacterium sp. 4-46] gi|168192643|gb|ACA14590.1| DNA polymerase III, beta subunit [Methylobacterium sp. 4-46] Length = 373 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 171/388 (44%), Positives = 240/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+++ L+++A+ +IE+T IPA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLRATDLDIEVTETIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL DG Q+S E G ++ I G S F L + PE++FP Sbjct: 61 VVDGGATTVPAHVIYDIVRKLPDGVQVSLETTGETG-QMQIRSGRSRFMLGALPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + F+L ++ LK L+++T FA++TEE RYYLNGIFFH E L+L AVATDG Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIETEAGLRLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-LSM 237 HRLA E+ MP IIVPRKAV EI +++ SV V LS +++ S +++ Sbjct: 180 HRLARVEMPAPEGSRGMPGIIVPRKAVAEIQKLVEDGGDSVGVELSPAKVRFTFSSGVTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL++ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVEREQFAKAVDRVSTISSERGRAVKLAVGGGRLSL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+NPD G A E ++V Y P+DI FN +YLL+I + D +F+L S Sbjct: 300 SVNNPDSGSATEELDVDYEAAPLDIGFNARYLLDITAQLDG-----DSALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K+ A YVLMPMR+ Sbjct: 355 LIQDKE---------GAPALYVLMPMRV 373 >gi|62288993|ref|YP_220786.1| DNA polymerase III subunit beta [Brucella abortus bv. 1 str. 9-941] gi|82698934|ref|YP_413508.1| DNA polymerase III subunit beta [Brucella melitensis biovar Abortus 2308] gi|237814483|ref|ZP_04593481.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A] gi|62195125|gb|AAX73425.1| DnaN, DNA polymerase III, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82615035|emb|CAJ09958.1| DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella melitensis biovar Abortus 2308] gi|237789320|gb|EEP63530.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A] Length = 397 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397 >gi|17988225|ref|NP_540859.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. 16M] gi|23500918|ref|NP_697045.1| DNA polymerase III subunit beta [Brucella suis 1330] gi|163842279|ref|YP_001626683.1| DNA polymerase III subunit beta [Brucella suis ATCC 23445] gi|225851548|ref|YP_002731781.1| DNA polymerase III subunit beta [Brucella melitensis ATCC 23457] gi|256368467|ref|YP_003105973.1| DNA polymerase III subunit beta [Brucella microti CCM 4915] gi|294851412|ref|ZP_06792085.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|17983990|gb|AAL53123.1| DNA polymerase iii, beta chain [Brucella melitensis bv. 1 str. 16M] gi|23346771|gb|AAN28960.1| DNA polymerase III, beta subunit [Brucella suis 1330] gi|163673002|gb|ABY37113.1| DNA polymerase III, beta subunit [Brucella suis ATCC 23445] gi|225639913|gb|ACN99826.1| DNA polymerase III, beta subunit [Brucella melitensis ATCC 23457] gi|255998625|gb|ACU47024.1| DNA polymerase III subunit beta [Brucella microti CCM 4915] gi|294820001|gb|EFG37000.1| DNA polymerase III [Brucella sp. NVSL 07-0026] Length = 397 Score = 327 bits (837), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397 >gi|323135990|ref|ZP_08071073.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242] gi|322399081|gb|EFY01600.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242] Length = 372 Score = 326 bits (836), Expect = 3e-87, Method: Compositional matrix adjust. Identities = 167/387 (43%), Positives = 237/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L LGH R++ER+ TIP+ +VL+ A D L +KA+ ++EIT PA Sbjct: 1 MKVTIERAALLRALGHVHRVVERRTTIPILANVLIDARDDALTLKATDLDLEITEKAPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T+ AH LYDIVRKL +GAQ+S E G ++ + G S F L + PES+FP Sbjct: 61 VGQPGATTLPAHTLYDIVRKLPEGAQVSLDASGEAG-QLTLRSGRSRFNLSTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 ++ + F+LA + LK L+E+T FA+++EE RYYLNGI+ H + D L L AVATDG Sbjct: 120 VTSGDFSHRFQLAPADLKRLIEKTQFAISSEETRYYLNGIYIHAMDVDGQLMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ A A MP +I+PRKAV E+ R++ V V LS +++ + ++ Sbjct: 180 HRLARLELPAPAGCADMPGVILPRKAVTEVQRLIEDAQGDVSVELSTNKMRFSFGDALLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V +AVDRVS +SS R +AVK++L+ KL ++ Sbjct: 240 TKLIDGTFPDYSRVIPAGNDKRLTVERDVFAKAVDRVSTISSERGRAVKMALTEGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A+E + Y+ P+D+ FN +YLL+I + S D +F+L S Sbjct: 300 VTNPDQGSAVEELEADYDGAPLDVGFNARYLLDITQQLDS-----DTALFKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D S A YVLMPMR+ Sbjct: 355 IQDRDGAS---------ALYVLMPMRV 372 >gi|170748657|ref|YP_001754917.1| DNA polymerase III subunit beta [Methylobacterium radiotolerans JCM 2831] gi|170655179|gb|ACB24234.1| DNA polymerase III, beta subunit [Methylobacterium radiotolerans JCM 2831] Length = 373 Score = 326 bits (836), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 170/388 (43%), Positives = 238/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+A L+++A+ +IE+T ++PA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRAEGSGLQLRATDLDIEVTESVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL DGAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VADAGATTVPAHVIYDIVRKLPDGAQVSLETGGESG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + FE+A++ LK L+E+T FA++TEE RYYLNGI+ H E + AVATDG Sbjct: 120 LAAGEMPHGFEIAAADLKRLIEKTQFAISTEETRYYLNGIYLHTLETENGPAMRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237 HRLA E+ MP +IVPRKAV EI ++L +V V LS ++I L L++ Sbjct: 180 HRLARVEIPAPQGSVGMPGVIVPRKAVAEIQKLLDDGGETVAVDLSPAKIRLRFAGGLTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP +NDK L V +AVDRVS +SS R +AVKL L+ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPANNDKRLTVERDAFAKAVDRVSTISSERGRAVKLGLAEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVNNPDSGSATEELDVDYEAAGLDIGFNARYLLDITAQLEG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++ A YVLMPMR+ Sbjct: 355 LIQDRE---------GAPALYVLMPMRV 373 >gi|161617993|ref|YP_001591880.1| DNA polymerase III subunit beta [Brucella canis ATCC 23365] gi|161334804|gb|ABX61109.1| DNA polymerase III, beta subunit [Brucella canis ATCC 23365] Length = 397 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDI+RKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397 >gi|239830848|ref|ZP_04679177.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] gi|239823115|gb|EEQ94683.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] Length = 385 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 14 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 74 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 192 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ + V V LS+++I + S+ ++ Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPEVVVTVELSDAKIRFTVGSVVLT 252 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSG-----SDAVFMLADAGSPTL 367 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 368 VR-------DTGDEDV--LYVLMPMRV 385 >gi|260755858|ref|ZP_05868206.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870] gi|260884883|ref|ZP_05896497.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68] gi|260675966|gb|EEX62787.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870] gi|260874411|gb|EEX81480.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68] Length = 376 Score = 326 bits (835), Expect = 4e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376 >gi|254690319|ref|ZP_05153573.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870] gi|256258573|ref|ZP_05464109.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68] Length = 372 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372 >gi|192288435|ref|YP_001989040.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris TIE-1] gi|192282184|gb|ACE98564.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris TIE-1] Length = 372 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E ++F L +S +K L++RT FA++TEE RYYLNGI+ H + + L AVATDG Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + MP +IVPRK VGE+ R++ ++ + + LS +I + ++ ++ Sbjct: 180 HRLAQLDLTLPSGADGMPGLIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKELRV+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELRVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I EV V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D+DSK +A YVLMPMR+ Sbjct: 355 I--QDRDSK-------SALYVLMPMRV 372 >gi|163849459|ref|YP_001637502.1| DNA polymerase III subunit beta [Methylobacterium extorquens PA1] gi|163661064|gb|ABY28431.1| DNA polymerase III, beta subunit [Methylobacterium extorquens PA1] Length = 373 Score = 326 bits (835), Expect = 5e-87, Method: Compositional matrix adjust. Identities = 173/388 (44%), Positives = 239/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L+ LGH R++ER+NTIP+ +VLL+ + L++KA+ +IE+T + A Sbjct: 1 MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH E + LKL AVATDG Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E D MP IIVPRKAV EI +++ SV+V LS ++I L + Sbjct: 180 HRLARVETDAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239 Query: 239 V-RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL++S +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 LIQDRD---------GAPALYVLMPMRV 373 >gi|114704370|ref|ZP_01437278.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506] gi|114539155|gb|EAU42275.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506] Length = 374 Score = 325 bits (833), Expect = 7e-87, Method: Compositional matrix adjust. Identities = 176/389 (45%), Positives = 244/389 (62%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ERS++L+ L H R++ER+NTIP+ +VLL+A L +KA+ +IEIT + A Sbjct: 1 MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLRAKAETLGLKATDLDIEITEEVAAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV AHLLYDIVRKL DGA++ +E GT++ +S G SNF LQ PE++FP Sbjct: 61 GEQEGATTVPAHLLYDIVRKLPDGAEVKLVLNSE-GTQMTVSAGRSNFRLQCLPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E + F + + L L+ERT FA++TEE RYYLNGI+ H + D L L AVATDG Sbjct: 120 ITAGELSHGFTMEAGALARLIERTQFAISTEETRYYLNGIYLHTIDADGTLMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLS 236 HRLA AE+ + MP IIVPRK VGEI ++L+ D + V LSES+I I + Sbjct: 180 HRLARAEMTAPSGSEGMPGIIVPRKTVGEIQKLLADCEDDDEIAVDLSESKIRFKIGRVV 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M+ +LIDG FP+YQ VIP +NDKEL ++ + AVDRVS +SS R +AVKL+L+ +L Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKELTLDRASFSSAVDRVSTISSERGRAVKLTLADSQLT 299 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +TV++PD G A E + V Y ++I FN +YLL++ +S +E +F L S Sbjct: 300 LTVNSPDAGTATEELAVGYESEDLEIGFNARYLLDVTSQLSG-----EEAMFVLADPGSP 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I K+ D + YVLMPMR+ Sbjct: 355 TLI-------KDGGDT--STLYVLMPMRV 374 >gi|153007349|ref|YP_001368564.1| DNA polymerase III subunit beta [Ochrobactrum anthropi ATCC 49188] gi|151559237|gb|ABS12735.1| DNA polymerase III, beta subunit [Ochrobactrum anthropi ATCC 49188] Length = 385 Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 14 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 74 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSISVISGKSSFRLQCLPQSDFPE 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH +E LKL AVATDG Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESEGALKLRAVATDG 192 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 252 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSG-----SDAVFMLADAGSPTL 367 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 368 VR-------DTGDEDV--LYVLMPMRV 385 >gi|297247410|ref|ZP_06931128.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str. B3196] gi|297174579|gb|EFH33926.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str. B3196] Length = 397 Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397 >gi|158422637|ref|YP_001523929.1| DNA polymerase III subunit beta [Azorhizobium caulinodans ORS 571] gi|158329526|dbj|BAF87011.1| DNA polymerase III beta chain [Azorhizobium caulinodans ORS 571] Length = 372 Score = 325 bits (833), Expect = 8e-87, Method: Compositional matrix adjust. Identities = 166/387 (42%), Positives = 242/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+++L+ L H R++ER+NTIP+ +VL++ L +KA+ ++E+ +PA Sbjct: 1 MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIRTGTNGLSLKATDLDLEVVETVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH+LYDIVRKL DG+Q+ E G + + G + F LQ+ PE++FP Sbjct: 61 VGQDGATTVPAHVLYDIVRKLPDGSQVQLEAGGERG-NLTVRAGRARFTLQTLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 ++ +SF++ + + LV++T FA++TEE RYYLNGI+ H+ + KL AVATDG Sbjct: 120 LAAGDFSHSFKVKGAEFRRLVDKTQFAISTEETRYYLNGIYLHVADAAGTAKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+D A +P +IVPRK V EI ++L KD+ V VSLS ++I + + ++ ++ Sbjct: 180 HRLAQAELDAPEGSAGLPGVIVPRKTVAEIQKLLEDKDAEVTVSLSTTKIRVAVGAIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V+ ++ AVDRVS +SS R +AVKLS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPAGNDKILLVDKSDFAAAVDRVSTVSSERGRAVKLSIQDGKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I + D +L S Sbjct: 300 VTNPDSGSATEELEVDYAAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R DS K ++ YVLMPMR+ Sbjct: 355 VR----DS-----TKTDSLYVLMPMRV 372 >gi|148560207|ref|YP_001258051.1| DNA polymerase III subunit beta [Brucella ovis ATCC 25840] gi|148371464|gb|ABQ61443.1| DNA polymerase III, beta subunit [Brucella ovis ATCC 25840] Length = 397 Score = 325 bits (832), Expect = 1e-86, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNSPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + D V YVLMPMR+ Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397 >gi|92115635|ref|YP_575364.1| DNA polymerase III subunit beta [Nitrobacter hamburgensis X14] gi|91798529|gb|ABE60904.1| DNA polymerase III, beta subunit [Nitrobacter hamburgensis X14] Length = 372 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 168/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLKATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+ YDIVRKL DGAQI + + + I G S F LQ+ PE++FP Sbjct: 61 TATGGATTVPAHIFYDIVRKLPDGAQIVLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF+LA++ +K L++RT FA++TEE RYYLNGI+ H + ++ L VATDG Sbjct: 120 LAAGEMTHSFKLAAADIKRLIDRTQFAISTEETRYYLNGIYLHSAGSAKNATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +I+PRK VGE+ R++ ++ V + LS+ +I I ++ ++ Sbjct: 180 HRLAQVDLALPNGAEGMPGVIIPRKTVGEVQRLIEDNEAEVGIELSQGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASEPLDIGFNSRYLLDIAAQIEG-----EGAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DKDSK A YVLMPMR+ Sbjct: 355 VH--DKDSK-------GALYVLMPMRV 372 >gi|218528085|ref|YP_002418901.1| DNA polymerase III subunit beta [Methylobacterium chloromethanicum CM4] gi|240136785|ref|YP_002961252.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1] gi|254558655|ref|YP_003065750.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4] gi|218520388|gb|ACK80973.1| DNA polymerase III, beta subunit [Methylobacterium chloromethanicum CM4] gi|240006749|gb|ACS37975.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1] gi|254265933|emb|CAX21682.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4] Length = 373 Score = 324 bits (830), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 172/388 (44%), Positives = 239/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L+ LGH R++ER+NTIP+ +VLL+ + L++KA+ +IE+T + A Sbjct: 1 MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH E + LKL AVATDG Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E + MP IIVPRKAV EI +++ SV+V LS ++I L + Sbjct: 180 HRLARVETEAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239 Query: 239 V-RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL++S +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 LIQDRD---------GAPALYVLMPMRV 373 >gi|316931398|ref|YP_004106380.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris DX-1] gi|315599112|gb|ADU41647.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris DX-1] Length = 372 Score = 323 bits (829), Expect = 2e-86, Method: Compositional matrix adjust. Identities = 171/387 (44%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E ++F L +S +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSSGAASLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + MP +IVPRK VGE+ R++ ++ + + LS +I + ++ ++ Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I EV V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D+DSK +A YVLMPMR+ Sbjct: 355 I--QDRDSK-------SALYVLMPMRV 372 >gi|220920056|ref|YP_002495357.1| DNA polymerase III subunit beta [Methylobacterium nodulans ORS 2060] gi|219944662|gb|ACL55054.1| DNA polymerase III, beta subunit [Methylobacterium nodulans ORS 2060] Length = 373 Score = 323 bits (827), Expect = 3e-86, Method: Compositional matrix adjust. Identities = 170/388 (43%), Positives = 240/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+++ L++KA+ +IE+T IPA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLKATDLDIEVTETIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S + G ++ I G S F L + PE++FP Sbjct: 61 VADGGATTVPAHVIYDIVRKLPEGAQVSLETTGDTG-QMLIRSGRSRFTLGALPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + F+L ++ LK L+++T FA++TEE RYYLNGIFFH E +KL AVATDG Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIEAEGGVKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ MP IIVPRKAV EI +++ SV V +S +++ + M Sbjct: 180 HRLARVEMPAPEGSHGMPGIIVPRKAVAEIQKLVEDGGDSVGVEISSAKVRFTFSTGVML 239 Query: 239 V-RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL+++ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVERDQFAKAVDRVSTISSERGRAVKLAVAGGRLSL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+NPD G A E ++ Y P+DI FN +YLL+I + D +F+L S Sbjct: 300 SVNNPDSGSATEELDADYEAAPLDIGFNARYLLDITAQLDG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ KD A YVLMPMR+ Sbjct: 355 LIQDKD---------GAPALYVLMPMRV 373 >gi|39933082|ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris CGA009] gi|39652707|emb|CAE25446.1| DNA polymerase III beta subunit [Rhodopseudomonas palustris CGA009] Length = 372 Score = 322 bits (826), Expect = 5e-86, Method: Compositional matrix adjust. Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E ++F L +S +K L++RT FA++TEE RYYLNGI+ H + + L AVATDG Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + MP +IVPRK VGE+ R++ ++ + + LS +I + ++ ++ Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I EV V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D+DSK +A YVLMPMR+ Sbjct: 355 I--QDRDSK-------SALYVLMPMRV 372 >gi|296445221|ref|ZP_06887181.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] gi|296257395|gb|EFH04462.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] Length = 371 Score = 320 bits (820), Expect = 2e-85, Method: Compositional matrix adjust. Identities = 176/387 (45%), Positives = 240/387 (62%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ER+ +L LGH R++ER+ TIP+ +VLL A D L +KA+ ++EIT A Sbjct: 1 MKITIERAALLRALGHVHRVVERRTTIPILANVLLDAAD-GLLLKATDLDLEITEKAAAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ T+ AH LYDIVRKL DGAQ+S E G + + G S F LQS PES+FP Sbjct: 60 IGQKGATTLPAHTLYDIVRKLPDGAQVSLEGTGEQGLFL-LRSGRSRFQLQSLPESDFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ + F+LA + LK L+ +T FA+++EE RYYLNGIF H E + L AVATDG Sbjct: 119 VTSGEFSHRFQLAPADLKKLILKTQFAISSEETRYYLNGIFLHSTEVEGHQLLRAVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ A A MP +I+PRKAV E+LR++ +V++ LS +++ + ++ Sbjct: 179 HRLARVELPAPAGAAGMPGVILPRKAVNEVLRLVEDAQGAVEIELSTNKMRFSFGETVLT 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V + R+AVDRVS +SS R +AVKL+LS KL ++ Sbjct: 239 TKLIDGTFPDYGRVIPAGNDKRLTVERASFREAVDRVSTISSERGRAVKLALSEGKLVLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A+E + Y+ P+DI FN +YLL+I D + S D +FRL S Sbjct: 299 VTNPDQGSAVEEIEADYDGPPIDIGFNSRYLLDIADQLDS-----DTALFRLADPGSPTL 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D S A YVLMPMR+ Sbjct: 354 IQDRDGAS---------ALYVLMPMRV 371 >gi|75674201|ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter winogradskyi Nb-255] gi|74419071|gb|ABA03270.1| DNA polymerase III, beta subunit [Nitrobacter winogradskyi Nb-255] Length = 372 Score = 319 bits (817), Expect = 5e-85, Method: Compositional matrix adjust. Identities = 164/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDI+RKL DGAQI + + + I G S F LQ+ PE++FP Sbjct: 61 TGTVGSTTVPAHMFYDIIRKLPDGAQIVLEGDGDRSV-LTIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF LA++ LK L++RT FA++TEE RYYLNGI+ H + L VATDG Sbjct: 120 LAAGEMTHSFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGTANNATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +I+PRK VGE+ R++ ++ + + LS+ +I + ++ ++ Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D+DS+ A YVLMPMR+ Sbjct: 355 VH--DRDSR-------GALYVLMPMRV 372 >gi|254472242|ref|ZP_05085642.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062] gi|211958525|gb|EEA93725.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062] Length = 372 Score = 318 bits (815), Expect = 1e-84, Method: Compositional matrix adjust. Identities = 167/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+++L+ L H R++ER+NTIP+ +V+LQA G L++KA+ ++E+ +I A Sbjct: 1 MKVTLERTELLKSLTHVHRVVERRNTIPILSNVMLQAEGGNLKLKATDLDLEVVESIAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AH++Y+IVRKL DG+Q+ + T + I G S F LQ P ++FP Sbjct: 61 VETPGATTVPAHMIYEIVRKLPDGSQVVLETSGDDST-MEIRAGRSRFALQILPVTDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E+ +SF + + ++ L++ T FA++TEE RYYLNGI+ H + E L+ AVATDG Sbjct: 120 LTAGEFSHSFTMTAGGIRKLIDSTQFAISTEETRYYLNGIYMHSLDIGEGLRFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ MP IIVPRK VGEI ++L + +KV +SE++I I + ++ Sbjct: 180 HRLAQAELEAPEGSDGMPGIIVPRKTVGEIQKLLDDPEVEIKVEISETKIRFTIGDIILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDKELRV+ ++AVDRVS ++S R +AVK++LS K+ +T Sbjct: 240 SKLIDGTFPDYERVIPKGNDKELRVDRDVFKEAVDRVSTIASDRGRAVKMALSEGKIVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y+ +I FN KYLL+I + + D +F L S S Sbjct: 300 VTNPDSGTATEEVAVEYDNEEFEIGFNSKYLLDIAAQLEA-----DTALFTLADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + D A YVLMPMR+ Sbjct: 355 IRDEGSD---------EAIYVLMPMRV 372 >gi|90421530|ref|YP_529900.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB18] gi|90103544|gb|ABD85581.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB18] Length = 372 Score = 317 bits (812), Expect = 2e-84, Method: Compositional matrix adjust. Identities = 172/387 (44%), Positives = 242/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VLL+A G L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLLRAEKGRLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PE++FP Sbjct: 61 TATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E +SF L ++ +K L++RT FA++TEE RYYLNGI+ H L AVATDG Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHGAGTAAAATLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + A MP +IVPRK VGE+ R++ +++V + LS +I + + ++ Sbjct: 180 HRLAQVDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDTEAAVGIELSVGKIRFTLGDVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I EV V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D+D+K A YVLMPMR+ Sbjct: 355 V--QDRDAK-------GALYVLMPMRV 372 >gi|27375940|ref|NP_767469.1| DNA polymerase III subunit beta [Bradyrhizobium japonicum USDA 110] gi|27349078|dbj|BAC46094.1| DNA polymerase III beta chain [Bradyrhizobium japonicum USDA 110] Length = 372 Score = 316 bits (810), Expect = 3e-84, Method: Compositional matrix adjust. Identities = 170/389 (43%), Positives = 241/389 (61%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PE++FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF LA+ +K L++RT FA++TEE RYYLNGI+ H + L VATDG Sbjct: 120 LAAGDMSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRLA ++D+V MP +IVPRK VGE+ R++ ++ + + LS+++I I ++ Sbjct: 180 HRLA--QLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +LIDG FP+Y VIP NDKEL V+ + AVDRVS +SS R +AVKLSLS KL Sbjct: 238 LTSKLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPGKLV 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++V NPD G A E + V Y +DI FN +YLL+I I EV RL S Sbjct: 298 LSVTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----ATLRLADPGSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D+D K +A YVLMPMR+ Sbjct: 353 TLV--QDRDDK-------SALYVLMPMRV 372 >gi|163867416|ref|YP_001608613.1| DNA polymerase III subunit beta [Bartonella tribocorum CIP 105476] gi|161017060|emb|CAK00618.1| DNA polymerase III, beta chain [Bartonella tribocorum CIP 105476] Length = 373 Score = 315 bits (808), Expect = 6e-84, Method: Compositional matrix adjust. Identities = 165/387 (42%), Positives = 254/387 (65%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV+R+ L+ LG R++ER+NT+P+ +VL+ A +G +++K + ++E+T + + Sbjct: 1 MRITVDRNQFLKSLGRVHRVVERRNTVPILSNVLIDAENGHVQLKTTDLDLEVTESFTVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDI+RKL DG +I + + +++ G +F LQ P+++FP Sbjct: 61 VEHAGATTVPAHLLYDIIRKLPDGNEIVLSVDENQASTMSVVSGCVHFQLQCLPKADFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH IN++ LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSASGLKHLLDCTQFAISTEETRYYLNGIYFHVINDDVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA E++ + + MP +IVPRKAVGE+ ++LS + D V + LSE++I ++ S+ + Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDGDVCIELSETKIRFSVGSVIFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL VN + AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELVVNRQDFSSAVDRVSTISSDRGRAVKLTIEHGQLRLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A + ++V Y+ P++I FN +YLL+I +SS DE+VF L + + Sbjct: 301 VNSPDSGSAEDQLSVTYSSEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + YVLMP+R+ Sbjct: 356 IRDND---------DADVLYVLMPIRV 373 >gi|240849790|ref|YP_002971178.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup] gi|240266913|gb|ACS50501.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup] Length = 373 Score = 315 bits (806), Expect = 9e-84, Method: Compositional matrix adjust. Identities = 169/388 (43%), Positives = 255/388 (65%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV+RS L+ LG R++ER+NT+P+ +VL+ A +G +++KA+ ++E+T + + Sbjct: 1 MRITVDRSQFLKSLGRVHRVVERRNTVPILSNVLIDAENGSVQLKATDLDLEVTESFAVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TV AHLLYDI+RKL D ++ EN+ GT +++ G ++F LQ P+++FP Sbjct: 61 VKQAGATTVPAHLLYDIIRKLPDSNEVVLSVDENQAGT-MSVVSGCAHFQLQCLPKADFP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDG 178 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+ H IN+ LKL VATDG Sbjct: 120 ESLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYLHVINDGVLKLRLVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237 HRLA E++ + + MP +IVPRKAVGE+ ++LS + DS V + LSE++I ++ S+ Sbjct: 180 HRLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDSDVCIELSETKIRFSVGSVIF 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+YQ VIP NDKEL VN + AVDRVS +SS R +AVKL++ +L + Sbjct: 240 TSKLIDGTFPDYQRVIPLGNDKELIVNRQDFSSAVDRVSTISSDRGRAVKLTIEHRQLRL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V++PD G A + ++V Y P++I FN +YLL+I +SS DE+VF L + + Sbjct: 300 VVNSPDSGSAEDQLSVTYASEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPA 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + YVLMP+R+ Sbjct: 355 LIRDND---------DADVLYVLMPIRV 373 >gi|85713965|ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A] gi|85699091|gb|EAQ36959.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A] Length = 372 Score = 314 bits (805), Expect = 1e-83, Method: Compositional matrix adjust. Identities = 163/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLSAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS +V AH+ YDIVRKL +GAQI + + + I G S F LQ+ PE++FP Sbjct: 61 TGTIGSTSVPAHMFYDIVRKLPEGAQILLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E ++F LA++ LK L++RT FA++TEE RYYLNGI+ H N + L VATDG Sbjct: 120 LAAGEMTHAFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGNAKSATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +I+PRK VGE+ R++ ++ + + LS+ +I I ++ ++ Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D+DS+ A YVLMPMR+ Sbjct: 355 VH--DRDSR-------GALYVLMPMRV 372 >gi|182679952|ref|YP_001834098.1| DNA polymerase III subunit beta [Beijerinckia indica subsp. indica ATCC 9039] gi|182635835|gb|ACB96609.1| DNA polymerase III, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 371 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 165/388 (42%), Positives = 237/388 (61%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK+T+ER+ +L+ LGH R++ER+NTIP+ +VLL ++ DGLL +KA+ ++E+T + A Sbjct: 1 MKVTLERAALLKALGHVHRVVERRNTIPILSNVLLHSDGDGLL-LKATDLDLEVTERLTA 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G T+ AH+LYDIVRKL DG+QIS E + + G S F LQS PES+FP Sbjct: 60 ETGTQGGTTLPAHILYDIVRKLPDGSQISL--ETTEAGPLQLRSGRSRFTLQSLPESDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATD 177 + +F L + LK L+++T FA+++EE RYYLNGIF H E + + L AVATD Sbjct: 118 DLAAGTFEQTFTLKAGDLKRLIDKTQFAISSEETRYYLNGIFMHTTEVEGHVMLRAVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA E+ + MP II+PRK V E+ +++ + VK+ +S ++I + + Sbjct: 178 GHRLARVEIPAPQGASGMPGIIIPRKTVAEVQKLVEDQAQEVKLEVSPTKIRFTFGEVVL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP NDK L V+ + AVDRVS +SS R +AVKL+L+ KL + Sbjct: 238 TSKLIDGTFPDYARVIPSGNDKFLTVDRGPFQDAVDRVSTISSERGRAVKLALAEGKLTL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A+E + V Y+ P+DI FN +YLL+I + S D +F+ S Sbjct: 298 SVTNPDSGSAVEELEVDYDAAPIDIGFNARYLLDIAAQLDS-----DTALFKFADPGSPT 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YVLMPMR+ Sbjct: 353 LVLDRDGAS---------ALYVLMPMRV 371 >gi|49474937|ref|YP_032978.1| DNA polymerase III subunit beta [Bartonella henselae str. Houston-1] gi|49237742|emb|CAF26934.1| DNA polymerase III, beta chain [Bartonella henselae str. Houston-1] Length = 373 Score = 313 bits (802), Expect = 3e-83, Method: Compositional matrix adjust. Identities = 169/387 (43%), Positives = 253/387 (65%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV+R+ +L+ LG R++ER+NT+P+ +VL+ A+ +++KA+ ++E+T + A+ Sbjct: 1 MRITVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFVAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ITV AHLLYDIVRKL DG++I + + +++ G +NF LQ P+ +FP Sbjct: 61 IKQEGAITVPAHLLYDIVRKLPDGSEIVLSVDMNQASTMSVVSGCANFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH I++ LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSTSGLKHLLDCTQFAISTEETRYYLNGIYFHVIDDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + + MP +IVPRK VGE+ ++LS + D V V LSE++I +I S+ + Sbjct: 181 RLAQVDMEAPSGVEGMPGVIVPRKTVGELQKLLSEEVDEDVCVELSETKIRFSIGSVVFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN + AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNRQDFSSAVDRVSTISSDRGRAVKLTIEQGQLKLI 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A + + V Y P++I FN +YLL+I +SS DE+VF L + + Sbjct: 301 VHNPDSGSAEDQLAVTYTSDPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR NN +A YVLMP+R+ Sbjct: 356 IR-------NN--GVADALYVLMPIRV 373 >gi|298290590|ref|YP_003692529.1| DNA polymerase III subunit beta [Starkeya novella DSM 506] gi|296927101|gb|ADH87910.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506] Length = 371 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 164/386 (42%), Positives = 232/386 (60%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+++L+ L H R++ER+NTIP+ +VL++ + L ++A+ +IEI I A Sbjct: 1 MKVTVERAELLKSLAHVHRVVERRNTIPILANVLMRTDARGLALRATDLDIEIVETIAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH +YDIVRKL +GAQ+ + GT + + G S F LQ+ PE+EFP Sbjct: 61 VGQEGATTVPAHTIYDIVRKLPEGAQVQIETSGDRGT-LTVRAGRSRFALQTLPETEFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDGH 179 E + F L + LK LV++T FA++TEE RYYLNGI+ H+ + L AVATDGH Sbjct: 120 LAAGEMTHRFTLPAGELKRLVDKTQFAISTEETRYYLNGIYLHVADASGPVLRAVATDGH 179 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A+ A MP +IVPRKAV EI R+ ++ V V LS ++I ++++ + ++ Sbjct: 180 RLAQAQTTAPAGATGMPGVIVPRKAVAEIQRLAEDAEAEVTVELSTAKIRVSLDRVVLTS 239 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP NDK L V+ + AVDRVS ++S R +AVKLS+ KL ++V Sbjct: 240 KLIDGTFPDYGRVIPLGNDKTLVVDKADFASAVDRVSTVASERGRAVKLSIGDGKLTLSV 299 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NPD G A E + V Y P+DI FN +YLL+I I +L S + Sbjct: 300 TNPDSGSATEEIEVEYAAEPIDIGFNSRYLLDITSQIEG-----GTAELKLADPGSPTLV 354 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +K A YVLMPMR+ Sbjct: 355 QDPEKR---------GALYVLMPMRV 371 >gi|49473789|ref|YP_031831.1| DNA polymerase III subunit beta [Bartonella quintana str. Toulouse] gi|49239292|emb|CAF25618.1| DNA polymerase III, beta chain [Bartonella quintana str. Toulouse] Length = 373 Score = 313 bits (801), Expect = 4e-83, Method: Compositional matrix adjust. Identities = 165/387 (42%), Positives = 251/387 (64%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +TV+R+ +L+ LG R++ER+NT+P+ +VL+ A+ +++KA+ ++E+T + A+ Sbjct: 1 MHVTVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFMAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV AHLLYDIVRKL DG++I + + +++ G ++F LQ P+ +FP Sbjct: 61 VKQAGAITVPAHLLYDIVRKLLDGSEIVLSVDMNQASTMSVVSGCAHFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ ++ LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + + MP II+PRKAVGE+ ++LS + + +V V LSE++I ++ S+ + Sbjct: 181 RLAQVDMEAPSGVKDMPGIIIPRKAVGELQKLLSEEINDNVCVELSETKIRFSVGSVVFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN N AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNKQNFSSAVDRVSTISSDRGRAVKLTIEQGQLKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A + + Y P++I FN +YLL+I +S DE+VF L + + Sbjct: 301 VHNPDSGSAEDQLAATYTSDPLEIGFNSRYLLDIAGQLSG-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D NA YVLMP+R+ Sbjct: 356 IRDND---------DANALYVLMPIRV 373 >gi|217979804|ref|YP_002363951.1| DNA polymerase III subunit beta [Methylocella silvestris BL2] gi|217505180|gb|ACK52589.1| DNA polymerase III, beta subunit [Methylocella silvestris BL2] Length = 372 Score = 311 bits (797), Expect = 1e-82, Method: Compositional matrix adjust. Identities = 163/387 (42%), Positives = 237/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH R++ER+NTIP+ +VLL+A L +KA+ ++E+T + A Sbjct: 1 MKVTLERAALLKSLGHVHRVVERRNTIPILSNVLLRAEGKSLLLKATDLDLEVTERLAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G T+ AH LYDIVRKL DG+Q+S + G ++ + G S F LQ+ P+S+FP Sbjct: 61 VGVAGGTTLPAHTLYDIVRKLPDGSQVSLEIAGDSG-QLLLRSGRSRFNLQTLPDSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 ++ + F L + LK L+E+T FA++ EE RYYLNGIF H E + L AVATDG Sbjct: 120 LAAGDFSHDFLLPPADLKRLIEKTQFAISNEETRYYLNGIFMHSMEAEGASVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + MP +IVPRKAV E+ +++ + ++V LS ++ + ++ Sbjct: 180 HRLARVEIACPKGASGMPGVIVPRKAVTEVQKLIEDLSADIRVELSTTKARFTFGDVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V AVDRVS +SS R +AVKL+++ KL ++ Sbjct: 240 TKLIDGTFPDYMRVIPAGNDKRLIVERGPFAAAVDRVSTISSERGRAVKLAIADGKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E ++V Y+ P+DI FN +YLL+I + + S D +F+L S Sbjct: 300 VTNPDSGSAQEELDVDYDSTPLDIGFNARYLLDITEQLDS-----DTALFKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +D S A YVLMPMR+ Sbjct: 355 VQDRDGAS---------ALYVLMPMRV 372 >gi|121601944|ref|YP_989527.1| DNA polymerase III subunit beta [Bartonella bacilliformis KC583] gi|120614121|gb|ABM44722.1| DNA polymerase III, beta subunit [Bartonella bacilliformis KC583] Length = 373 Score = 305 bits (782), Expect = 6e-81, Method: Compositional matrix adjust. Identities = 165/387 (42%), Positives = 248/387 (64%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T++R+ L+ LG R++ER+NT+P+ +VL+ A+ + +KA+ ++EIT Sbjct: 1 MRVTIDRNQFLKSLGCVHRVVERRNTVPILSNVLIDADSDGMRLKATDLDLEITEFSVPH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G ITV AHLLYDIVRKL DG +I + + +++ G +NF LQ FP+ +FP Sbjct: 61 IEQTGGITVPAHLLYDIVRKLPDGNEIILAVDADRPNTMSVISGFANFRLQGFPKMDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLCAVATDGH 179 + ++ + F L +S LK+L++ T FA++TEE RYYLNGI+FHI N+ LKL VATDGH Sbjct: 121 SLPGQFNFRFSLLASDLKHLLDCTQFAISTEETRYYLNGIYFHIVNDGALKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + MP +I+PRK VGE+ R+LS + D+ V + LSE++I ++ S+ ++ Sbjct: 181 RLAQVDMEAPSGSEGMPGVIIPRKTVGELQRLLSEEADNYVCIELSETKIRFSVGSVVLT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN + VDRVS +SS R +AVKL++ + +L Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLTVNRRDFSSTVDRVSTISSDRGRAVKLTIENGQLRFV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I +S DE+VF LD + + Sbjct: 301 VNNPDSGSAEDQLVADYASDPLEIGFNSRYLLDIAAQLSG-----DEIVFMLDEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR DS + NA YVLMP+R+ Sbjct: 356 IR----DSHD-----TNALYVLMPIRV 373 >gi|163797311|ref|ZP_02191264.1| ApaG [alpha proteobacterium BAL199] gi|159177402|gb|EDP61958.1| ApaG [alpha proteobacterium BAL199] Length = 373 Score = 305 bits (781), Expect = 7e-81, Method: Compositional matrix adjust. Identities = 161/387 (41%), Positives = 242/387 (62%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT++R+ +L+ L H ++ER+NTIP+ +VLL+A DG L + A+ ++++ ++ S Sbjct: 1 MKITIDRAALLKPLAHVQSVVERRNTIPILANVLLRAADGTLSLTATDMDLDVVESVGCS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G TV AH LY+IVRKLQDG+++ + G + I G SNF L + P EFP+ Sbjct: 61 VDQPGQTTVPAHTLYEIVRKLQDGSEVELTAVGDSG-RMTIRAGRSNFSLPTLPMEEFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK-LCAVATDG 178 + SF L+++ K L++RT FA++TEE RYYLNGIF H D+ L AVATDG Sbjct: 120 LSGDTLPTSFVLSAADAKTLIDRTRFAISTEETRYYLNGIFLHEAKAGDVAVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + A MP++IVPRKAV EI +++ D V+VSLSE+++ ES ++ Sbjct: 180 HRLARVQMPLPTGAAGMPAVIVPRKAVQEIRKLIEETDGDVQVSLSENKLRFAFESSVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK LRV + ++AVDRV+ +S+ + ++VKLSL+S L ++ Sbjct: 240 TKLIDGTFPDYERVIPTGNDKMLRVESSMFKRAVDRVATISTEKSRSVKLSLTSGTLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD +A E ++V Y ++I FN +YL++I D I DE + VF + + S Sbjct: 300 ANSPDNAQATEEVDVDYAAAAIEIGFNSRYLMDIADQI--DE--GSKAVFAMADAASPTV 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D YVLMPMR+ Sbjct: 356 VTDESDD---------GTLYVLMPMRV 373 >gi|148251628|ref|YP_001236213.1| DNA polymerase III subunit beta [Bradyrhizobium sp. BTAi1] gi|146403801|gb|ABQ32307.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. BTAi1] Length = 372 Score = 305 bits (780), Expect = 1e-80, Method: Compositional matrix adjust. Identities = 168/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L ++A+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 TATAGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 + ++F + + +K+L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGDMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ A A+MP +IVPRK VGE+ R++ DS +++ LS+ +I + + ++ Sbjct: 180 HRLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIRIELSQGKIRFTLGQVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS +L ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKADFAAAVDRVSTISSERGRAVKLALSPGRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I EV V RL S Sbjct: 300 VTNPDSGSATEELEVEYAADALDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++DN+ NA YVLMPMR+ Sbjct: 355 IQ--------DRDNR-NALYVLMPMRV 372 >gi|312112797|ref|YP_004010393.1| DNA polymerase III subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311217926|gb|ADP69294.1| DNA polymerase III, beta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 373 Score = 300 bits (769), Expect = 2e-79, Method: Compositional matrix adjust. Identities = 158/388 (40%), Positives = 237/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M+ V+R+ +L LGH I+ER+NTIP+ ++L+ A+ DG L KA+ ++E A+PA Sbjct: 1 MRFVVDRNAMLRALGHITGIVERRNTIPILSNILIGADRDGGLTFKATDLDMEAVEAVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+V G++TV AH L+DIVRKL DGA+I ++ E G + ++ G ++F L P +FP Sbjct: 61 KVEVTGAVTVPAHTLHDIVRKLPDGAEIRIERKGEEG-RLKVATGRASFELAILPADDFP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATD 177 + E F + S LK L E+ FA++TEE RYYLNGI+ H E KL AVATD Sbjct: 120 DMGQTELPTRFTVDSGELKRLFEKARFAISTEETRYYLNGIYLHAVDGPEGGKLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA E A MP +IVPRKAVGE++++L S + V+V+LS ++I + + + Sbjct: 180 GHRLAQVETACPAGAGGMPGVIVPRKAVGEVIKLLESGAAPVEVTLSPAKIRFAVGDVVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP +N K L + +L +AVDRVS +SS + +AVKL+ + +L + Sbjct: 240 TSKLIDGSFPDYARVIPTTNKKLLLLENADLVKAVDRVSTLSSEKGRAVKLNAAEGRLVV 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +NP+ G A E ++ Y + P++I FN +YLL+I I + +F+L +S Sbjct: 300 SANNPESGSATEEISAEYQDEPLEIGFNARYLLDITGQIDG-----TKALFKLADGSSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + +A YVLMPMR+ Sbjct: 355 LI---------SDETDASALYVLMPMRV 373 >gi|319407987|emb|CBI81641.1| DNA polymerase III, beta chain [Bartonella schoenbuchensis R1] Length = 373 Score = 300 bits (767), Expect = 3e-79, Method: Compositional matrix adjust. Identities = 161/387 (41%), Positives = 249/387 (64%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT++R+ L+ L R++ER+NTIP+ +VL+ A+ +++KA+ ++E+ + A Sbjct: 1 MHITIDRNQFLKSLNRVHRVVERRNTIPILSNVLINASGDGVQLKATDLDLEVIESSLAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ITV AHLLYDIVRKL G++I +N +++ G +NF LQ P+ +FP Sbjct: 61 VEQEGAITVPAHLLYDIVRKLSSGSEIVLKVDNNQANTMSVVSGCANFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ F L++S LK L + T FA++TEE RYYLNGI+FH+ ++ LKL VATDGH Sbjct: 121 SLPGQFSCCFSLSASDLKRLFDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ ++I MP +I+PRKAVGE+ ++LS + + V + LSE++I ++ S+ ++ Sbjct: 181 RLAQVDMEAPSEIKDMPGVIIPRKAVGELQKLLSEETEGDVSIELSETKIRFSVGSVVLT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP +NDK+L VN + AVDRVS +SS R +AVKL++ + +L + Sbjct: 241 SKLIDGTFPEYQRVIPLNNDKKLAVNRQDFSAAVDRVSTISSDRGRAVKLTIENGQLKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I ++S DE+VF L + + Sbjct: 301 VNNPDSGSAEDQLVADYTSDPLEIGFNSRYLLDIAAQLTS-----DEMVFMLADAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + A YVLMP+R+ Sbjct: 356 IRESDDAA---------ALYVLMPIRV 373 >gi|319405029|emb|CBI78639.1| DNA polymerase III, beta chain [Bartonella sp. AR 15-3] Length = 373 Score = 299 bits (766), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 165/389 (42%), Positives = 250/389 (64%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ RS +L+ LG RI+ER+NTIP+ +VL+ A+DG +++KA+ ++EIT + + Sbjct: 1 MRVTISRSQLLKSLGRVHRIVERRNTIPILSNVLIDASDGRMQLKATDLDLEITESSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D +++ + + ++I+ G +NF LQ P+ +FP Sbjct: 61 IEQSGAITVPAHLLYDIVRKLLDDSEVILDVDESQASTMSITSGCTNFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FHI +D+ KL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASKLKYLIDCTQFAMSTEETRYYLNGIYFHIISDDISKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 RL A+VDI A + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ Sbjct: 181 RL--AQVDIEAPLGSDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVI 238 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +LIDG FP YQ VIP NDK+L +N + AVDRVS +SS R +AVKL + + Sbjct: 239 LTSKLIDGVFPEYQRVIPLKNDKKLIINRRDFSSAVDRVSTISSDRGRAVKLMIEKGLVR 298 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 V+NPD G A + + Y P++I FN +YLL+I +SS DE++F S + Sbjct: 299 FVVNNPDSGSAKDQLVADYAFDPLEIGFNSRYLLDIAAQLSS-----DEMIFTFADSGAP 353 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG N D ++ YVLMP+R+ Sbjct: 354 TLIRG-------NSDT--DSLYVLMPIRV 373 >gi|154250460|ref|YP_001411284.1| DNA polymerase III subunit beta [Parvibaculum lavamentivorans DS-1] gi|154154410|gb|ABS61627.1| DNA polymerase III, beta subunit [Parvibaculum lavamentivorans DS-1] Length = 372 Score = 299 bits (765), Expect = 5e-79, Method: Compositional matrix adjust. Identities = 158/387 (40%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ER +L+ L H ++ER+NTIP+ +VL++A DG L + A+ +IE+ AI A Sbjct: 1 MKITIERGALLKSLNHVQSVVERRNTIPILSNVLIKAEDGQLSLTATDLDIEVVEAIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T SAH LYDIVRKL +GAQ+ + G + ++ G S F LQS P+ +FP Sbjct: 61 VAQPGATTASAHTLYDIVRKLPEGAQVELSTGADEG-RLQLTAGRSRFALQSLPQEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + FEL + ++ L+++T FA++ EE RYYLNGI+FH + L AVATDG Sbjct: 120 MAAGSLPHRFELPAEAMRRLIDKTRFAISMEETRYYLNGIYFHAVDGPKQKSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A MP +IVPRK V E+ ++L ++ V +SE++I + ++ Sbjct: 180 HRLAQVDHDLPEGAAGMPGVIVPRKTVLELQKLLEGNSGALSVGVSETKIRFEFGGIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L+V+ +AVDRVS +S+ + +AVKL++ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPVGNDKMLQVDGKRFAEAVDRVSTISTEKSRAVKLNIEEGKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E ++V Y+ ++I FN +YLL+I + E F S S Sbjct: 300 VTNPDSGSATEELSVSYSSPAIEIGFNARYLLDITGQLDG-----AEASFAFADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R DS+++ A YVLMPMR+ Sbjct: 355 VR----DSEDSM-----AVYVLMPMRV 372 >gi|300021541|ref|YP_003754152.1| DNA polymerase III subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299523362|gb|ADJ21831.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 372 Score = 299 bits (765), Expect = 6e-79, Method: Compositional matrix adjust. Identities = 157/388 (40%), Positives = 237/388 (61%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ER ++L+ L H ++ER+ TIP+ +++L+A+ L KA+ E E++ ++ A Sbjct: 1 MRLEIERGELLKALSHVTSVVERRTTIPILSNIMLKASGETLMFKATDLEREVSESVGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++TV AH+L+DIVRKL DGA+I ++ E + I+ G S F LQ+ +FP Sbjct: 61 VSTPGTLTVPAHVLHDIVRKLPDGAEIEMKRDGE-KERLTITSGHSRFSLQTLSAEDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E + F + + LK L+++T FA++TEE RYYLNGIF H E L AVATDG Sbjct: 120 LAVGEIGHEFTIEAGDLKRLIDKTRFAISTEETRYYLNGIFLHPAETAGVKTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + MP +IVPRK V E+ R+L + V V +S++++ I + ++ Sbjct: 180 HRLAQVELPLPKGAEGMPGVIVPRKTVHELARLLEDSSAKVNVGVSQTKVRFEIGPVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKE++V + + AVDRVS ++S R +AVKL+++ DKL +T Sbjct: 240 SKLIDGTFPDYSRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVAKDKLILT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NP+ G A E + V Y+ P++I FN +YLL+I D + S ++ F L S Sbjct: 300 VNNPEGGSATEEIPVGYSAGPLEIGFNARYLLDIADQLES-----EDARFLLADPGSPTM 354 Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D NA YVLMPMR+ Sbjct: 355 VRDGGDG----------NALYVLMPMRV 372 >gi|148555705|ref|YP_001263287.1| DNA polymerase III subunit beta [Sphingomonas wittichii RW1] gi|148500895|gb|ABQ69149.1| DNA polymerase III, beta subunit [Sphingomonas wittichii RW1] Length = 370 Score = 298 bits (763), Expect = 9e-79, Method: Compositional matrix adjust. Identities = 155/387 (40%), Positives = 238/387 (61%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ LGH ++ER+NTIP+ +VL++A +G L + A+ +++I A+PA Sbjct: 1 MKATIERATLLKSLGHVQSVVERRNTIPILSNVLIEATAEGTLRLMATDLDLQIVEAVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +VD G+ TVSAH L+DI RKL +G+Q+ ++ + G + F LQ+ P+ +FP Sbjct: 61 AVDQPGATTVSAHTLFDIARKLPEGSQVQLSAAE---GKMQVVAGRARFNLQTLPKDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178 E E FEL + LK L+++T FA++TEE RYYLNGIFFH+ +E L A ATDG Sbjct: 118 MIAEGELPTRFELPAETLKQLIDKTRFAISTEETRYYLNGIFFHVQDEGSPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + MP II+PRK VGE+ ++L D SV ++LS ++I + + ++ Sbjct: 178 HRLARVTIARPDGAEGMPDIIIPRKCVGELRKLLDEVDGSVDITLSSTKIRFGLGTAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDK L+++ + + VDRV+ ++S + +AVK++L DK+ ++ Sbjct: 238 SKLIDGTFPDYNRVIPTANDKLLKIDPKSFMEGVDRVATIASEKTRAVKMALDRDKITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + Y +I FN +YLL+I+ I D V EV L + + Sbjct: 298 VTSPENGTAAEEVPGDYAATGFEIGFNARYLLDILGQIDGDTV---EV--HLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +++K A YVLMPMR+ Sbjct: 353 IR---------ENDKAPALYVLMPMRV 370 >gi|84684520|ref|ZP_01012421.1| DNA polymerase III subunit beta [Maritimibacter alkaliphilus HTCC2654] gi|84667499|gb|EAQ13968.1| DNA polymerase III subunit beta [Rhodobacterales bacterium HTCC2654] Length = 372 Score = 298 bits (762), Expect = 1e-78, Method: Compositional matrix adjust. Identities = 152/387 (39%), Positives = 237/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+VER+ +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISVERAVLLKAVGQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA + + G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGAMVQLTDDGAAG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ + L VATDG Sbjct: 120 MASSEYSANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDAEGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPKGAEDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N K++ V+ +AVDRV+ +SS R +AVKL+L+ DKL ++ Sbjct: 240 SKVIDGTFPDYTRVIPMGNTKKMEVDAAEFAKAVDRVATVSSERSRAVKLALAEDKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + M+I FN KYLLEI + +V + VF D++ V Sbjct: 300 VNAPDAGAAEEELIVAYGDEGMEIGFNAKYLLEI-----ASQVDRENAVFMFDNAGQPVL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|319406518|emb|CBI80160.1| DNA polymerase III, beta chain [Bartonella sp. 1-1C] Length = 373 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 159/387 (41%), Positives = 246/387 (63%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ RS +L+ L RI+ER++ IP+ +VL+ +DG +++KA+ ++EI + + Sbjct: 1 MRITIGRSQLLKSLSRVHRIVERRSAIPILSNVLIDTSDGRMQLKATDLDLEIIESSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D + + + + ++I+ G +NF LQ P+ +FP Sbjct: 61 IEQGGAITVPAHLLYDIVRKLPDDSNVILEVNEDQASAMSITSGCTNFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FH+ ++D LKL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIDDDILKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ ++ Sbjct: 181 RLAQVDIEAPSGVDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN + AVDRVS +SS R +AVKL++ + + Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLIVNRQDFSAAVDRVSTISSDRGRAVKLTIEKGVVKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I +SS DE++F S + Sbjct: 301 VNNPDSGSAKDQLVANYVFDPLEIGFNSRYLLDIAAQLSS-----DEMIFMFADSGAPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG D NA YVLMP+R+ Sbjct: 356 IRGNDDK---------NALYVLMPIRV 373 >gi|254461783|ref|ZP_05075199.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206678372|gb|EDZ42859.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 372 Score = 296 bits (759), Expect = 3e-78, Method: Compositional matrix adjust. Identities = 153/387 (39%), Positives = 240/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + HA ++ER+NTIP+ +VL++A + +A+ +IE+ + A Sbjct: 1 MKISIERATLLKAVSHAQSVVERRNTIPILANVLIEAEGNDVRFRATDLDIEVVDKVEAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L +IVRKL DGAQ++ + G + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVSATTLNEIVRKLPDGAQVTLTDDGTSG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F +SVL+ L +++ FA++TEE RYYLNG++ HI++ + L VATDG Sbjct: 120 MATSEYSANFSAQASVLRRLFDKSKFAISTEETRYYLNGVYMHISDAEGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ ++MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPENASEMPGVIVPRKTVGELRKLLDEDDMQIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|126724506|ref|ZP_01740349.1| DNA polymerase III subunit beta [Rhodobacterales bacterium HTCC2150] gi|126705670|gb|EBA04760.1| DNA polymerase III subunit beta [Rhodobacterales bacterium HTCC2150] Length = 372 Score = 294 bits (752), Expect = 2e-77, Method: Compositional matrix adjust. Identities = 153/387 (39%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ +G A ++ER+NTIP+ +VL++A+ + +A+ +IE+ A Sbjct: 1 MKISIERATLLKAVGQAQSVVERRNTIPILANVLIEADANSVSFRATDLDIEVVDKTVAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ TVSA L++IVRKL DGA + + G + + G SNF L + P +FP Sbjct: 61 VDRPGATTVSAVTLHEIVRKLPDGALVQLTDDGSSG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + S VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MANAEYGANFSIESKVLRRLFDKSKFAISTEETRYYLNGVYMHVSDADGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPAGAETMPGVIVPRKTVGELRKLLDDDDVKIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDDRLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N A YV+MPMR+ Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372 >gi|149202936|ref|ZP_01879907.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035] gi|149143482|gb|EDM31518.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035] Length = 372 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DG+ ++ + G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGASG-RLTVQAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ + MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + + V+ QAVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N A YV+MPMR+ Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372 >gi|85705684|ref|ZP_01036781.1| DNA polymerase III subunit beta [Roseovarius sp. 217] gi|85669674|gb|EAQ24538.1| DNA polymerase III subunit beta [Roseovarius sp. 217] Length = 372 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DG+ ++ + G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGTSG-RLTVQAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ + MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + + V+ QAVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N A YV+MPMR+ Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372 >gi|114762141|ref|ZP_01441609.1| DNA polymerase III subunit beta [Pelagibaca bermudensis HTCC2601] gi|114545165|gb|EAU48168.1| DNA polymerase III subunit beta [Roseovarius sp. HTCC2601] Length = 372 Score = 292 bits (748), Expect = 5e-77, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 234/388 (60%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGDTVTFRATDLDIEVLDRAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA + ++ G + ++ G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGALVQLADDSAAG-RLTVTAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + L+ L +++ FA++TEE RYYLNG++ H++ EE L VATDG Sbjct: 120 MASSEYATNFSAKAETLRKLFDKSKFAISTEETRYYLNGVYMHVSDSEEGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDAPVPEGAEAMPGVIVPRKTVGELRKLLDDDDMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ T +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDATEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + P++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDEPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D +A YV+MPMR+ Sbjct: 355 MREGSD----------TSAVYVVMPMRV 372 >gi|260428831|ref|ZP_05782808.1| DNA polymerase III, beta subunit [Citreicella sp. SE45] gi|260419454|gb|EEX12707.1| DNA polymerase III, beta subunit [Citreicella sp. SE45] Length = 372 Score = 292 bits (747), Expect = 8e-77, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 236/388 (60%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGNTVTFRATDLDIEVLDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA + ++ G + ++ G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGALVQLSEDGGAG-RLTVTAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ HI +EE L VATDG Sbjct: 120 MASSEYATNFTAKAEVLRKLFDKSKFAISTEETRYYLNGVYMHIADSEEGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 HRLARIDAPLPSGAEAMPGVIVPRKTVGELRKLLDEDEMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + P++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDDPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D +A YV+MPMR+ Sbjct: 355 MREGSD----------TSAVYVVMPMRV 372 >gi|83944867|ref|ZP_00957233.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633] gi|83851649|gb|EAP89504.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633] Length = 372 Score = 291 bits (745), Expect = 1e-76, Method: Compositional matrix adjust. Identities = 159/391 (40%), Positives = 235/391 (60%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ +VL+ A+DG A+ ++EI AS Sbjct: 1 MKLTIERAILLKALGHVQAVVERRNTIPILSNVLINASDGFARFTATDLDMEIVEEAEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 V+ G IT AH LY+I RKL +G+Q++ ELG + + +S G S F L P + Sbjct: 61 VEREGLITAPAHTLYEIARKLPEGSQVTL----ELGGDDPRILLSAGRSRFNLPILPPGD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVA 175 FP E+ SF +S + L+++T FA++TEE RYYLNGI H E D + L AVA Sbjct: 117 FPVMPSEDLAVSFTAPASEIARLIDKTKFAISTEETRYYLNGIHLHAAERDGRKTLRAVA 176 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+AE D+ MP++IVPRK + E+ R+L D V VS+SE +I + + Sbjct: 177 TDGHRLALAETDLPDGAMGMPAVIVPRKPIQELRRLLEDLDGDVDVSVSEGKIRFQLGAA 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++ +LIDG FP+Y+ VIP NDK +R++ QAVDRV+ +S + ++VKLSL+ ++ Sbjct: 237 VLTSKLIDGTFPDYERVIPRGNDKVMRIDRAPFAQAVDRVATISQEKSRSVKLSLAPGQV 296 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSN 354 +TV+NP+ G A E + Y+ M I FN +YLL++ I DE +F L DS + Sbjct: 297 TLTVNNPESGAASEELVADYSADEMTIGFNARYLLDVASQIEG-----DEAIFELADSGS 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DKD++ YVLMP+R+ Sbjct: 352 PTRVTDSGDKDAE----------YVLMPLRV 372 >gi|110677617|ref|YP_680624.1| DNA polymerase III subunit beta [Roseobacter denitrificans OCh 114] gi|109453733|gb|ABG29938.1| DNA polymerase III, beta subunit [Roseobacter denitrificans OCh 114] Length = 372 Score = 291 bits (744), Expect = 2e-76, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 240/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVTFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA ++ ++ +G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSATTLHEIVRKLPDGALVTLTADSAIG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + + VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MATSEYQSNFSVKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADADGGHVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L + + ++ VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPEAANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372 >gi|294085124|ref|YP_003551884.1| DNA polymerase III subunit beta [Candidatus Puniceispirillum marinum IMCC1322] gi|292664699|gb|ADE39800.1| DNA polymerase III, beta subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 367 Score = 289 bits (740), Expect = 4e-76, Method: Compositional matrix adjust. Identities = 152/386 (39%), Positives = 237/386 (61%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R +L LGH ++ER+NTIP+ +V+L+A DG L + A+ +++IT + + Sbjct: 1 MKLAIDRMSLLRPLGHVQSVVERRNTIPILANVVLRAEDGQLSLTATDMDMDITTEVGCA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119 V G+ T+SAH+LYDIVRKL DG+++ E +G IS G S+F L + P +FP Sbjct: 61 VATAGTTTMSAHMLYDIVRKLPDGSEV----ELSVGDGHAMISAGRSSFRLPTLPVEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E +F L ++ ++L++ T FA++TEE RYYLNGI+ H ++ LCAVATDGH Sbjct: 117 AISSNELPTNFVLTAADFRDLIDATKFAISTEETRYYLNGIYLHKSDAG-DLCAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A+MPSII+PRKAVGE+ ++L D V +S+SE+R ++ ++ Sbjct: 176 RLAMTKQTLPGGAAQMPSIILPRKAVGELRKLLDDYDGDVTISMSETRAEFAFGAVRLTT 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP +NDK ++V+ AVDRVS +SS + ++VK+ L + + ++ Sbjct: 236 KLIDGTFPDYTRVIPTNNDKIMQVDVGAFSAAVDRVSTISSEKSKSVKIGLRAGVMTLSA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D A E + V Y+ M+I FN +YLL+I ++S E+V+ F L S + Sbjct: 296 SNTDASSATEELEVSYSGNEMEIGFNARYLLDIASQVNS-EMVE----FALADQGSPTLV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D+ + +VLMPMR+ Sbjct: 351 RTPGDDA---------SLFVLMPMRV 367 >gi|260574426|ref|ZP_05842430.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2] gi|259023322|gb|EEW26614.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2] Length = 372 Score = 289 bits (739), Expect = 6e-76, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ L A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKALSQAQSVVERRNTIPILANVLIEAEGANVSFRATDLDIEVVDRAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL +GA +S ++ G + I+ G S F L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPEGALVSLAEDGAAG-RLTITAGRSTFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + +L+ L ++ FA++TEE RYYLNG++ H++ E L AVATDG Sbjct: 120 MANAEYASNFSAPAPLLRRLFDKAKFAISTEETRYYLNGVYLHVSTGESGPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK V E+ ++L ++ + VS+SE+++ L+++ Sbjct: 180 HRLARIDAPLPEGAAGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPVLTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|56695075|ref|YP_165422.1| DNA polymerase III subunit beta [Ruegeria pomeroyi DSS-3] gi|56676812|gb|AAV93478.1| DNA polymerase III, beta subunit [Ruegeria pomeroyi DSS-3] Length = 372 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGEGAQFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TVSA L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 IERAGATTVSATTLHEIVRKLPDGALVTLTADAAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MASSEYQSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPAGATDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ + +AVDRV+ +SS R +AVKL L DKL ++ Sbjct: 240 SKVIDGTFPDYTRVIPQANTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y++ ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDQSAVYVVMPMRV 372 >gi|332187226|ref|ZP_08388965.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] gi|332012647|gb|EGI54713.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] Length = 380 Score = 288 bits (738), Expect = 7e-76, Method: Compositional matrix adjust. Identities = 156/388 (40%), Positives = 234/388 (60%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VLL+A +G L + A+ +++I ++ A Sbjct: 10 MKATIERATLLKGLSHVQSVVERRNTIPILSNVLLEATAEGQLRMMATDLDLQINDSVAA 69 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +VD GS TVSAH L+DI RKL +GAQ+ + I G + F L + P +FP Sbjct: 70 AVDQPGSTTVSAHTLFDIARKLPEGAQVQLTAAE---GRMTIVAGRARFSLGTLPRDDFP 126 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 E E FEL +LK ++++T FA++TEE RYYLNGIF H+ E++ L A ATD Sbjct: 127 VIAEGELPTQFELPVELLKQIIDKTRFAISTEETRYYLNGIFLHVAEDNGAPVLKAAATD 186 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA ++ MP +IVPRK V E+ ++L D SV VSLS ++I ++ + Sbjct: 187 GHRLARVTIERPNGAEGMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGTKIRFDLGQAIL 246 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP +NDK L+++ Q VDRVS +++ + +AVK++L D++ + Sbjct: 247 TSKLIDGTFPDYSRVIPTANDKILKLDPKAFMQGVDRVSTIATEKTRAVKMALDRDRITL 306 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V +P+ G A E + Y P +I FN +YLL+I+ I SD V EV L + + Sbjct: 307 SVTSPENGTASEEVPGEYTSLPFEIGFNSRYLLDILGQIDSDLV---EV--HLADAAAPT 361 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +++K A YVLMPMR+ Sbjct: 362 LIR---------ENDKAPALYVLMPMRV 380 >gi|84501259|ref|ZP_00999464.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597] gi|84390550|gb|EAQ03038.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597] Length = 372 Score = 288 bits (738), Expect = 9e-76, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 241/388 (62%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGNEVQFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGAQ++ ++ G + ++ G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGAQVTLSEDGAAG-RLTVAAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLK-LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ E ED + L VATDG Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRMLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK VGE+ ++L + V VS+SE+++ ++++ Sbjct: 180 HRLARIDATLPEGAADMPGVIVPRKTVGELRKLLDDDELQVAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ ++ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFAKAVDRVATVSSERSRAVKLALDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +S+ Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAGDPTL 354 Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D +A YV+MPMR+ Sbjct: 355 MREGSD----------TSAVYVVMPMRV 372 >gi|83950589|ref|ZP_00959322.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM] gi|83838488|gb|EAP77784.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM] Length = 372 Score = 288 bits (737), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKFSIERGILLKAVSQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS TVSA L++IVRKL DGA ++ + G + + G S+F L + P+ +FP Sbjct: 61 VERAGSTTVSAVTLHEIVRKLPDGALVTLTDDGAAG-RLAVEAGRSSFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYASNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDGDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L D+ + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPDGAGDMPGVIVPRKTVGELRKLLDDDDAVIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|319403602|emb|CBI77187.1| DNA polymerase III, beta chain [Bartonella rochalimae ATCC BAA-1498] Length = 373 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 160/388 (41%), Positives = 244/388 (62%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ RS +L+ L RI+ER+NTIP+ +VL+ +DG +++KA+ ++EI + Sbjct: 1 MRVTIGRSQLLKSLSRVHRIVERRNTIPILSNVLIDTSDGRMQLKATDLDLEIIETSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G+ITV AHLLYDIVRKL D + + EN+ T ++I+ G +NF LQ P+ +FP Sbjct: 61 LEQAGAITVPAHLLYDIVRKLPDDSDVILDVNENQAST-MSITSGCTNFQLQCLPKVDFP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDG 178 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FH+ +D LKL V+TDG Sbjct: 120 ESLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIYDDILKLRLVSTDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237 HRLA +++ + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ + Sbjct: 180 HRLAQVDIEAPSGADGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVIL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP YQ VIP NDK+L +N + AVDRVS +SS R +AVKL + + + Sbjct: 240 TSKLIDGVFPEYQRVIPLGNDKKLIINRQDFSAAVDRVSTISSDRGRAVKLMIEKGIVKL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V+NPD G A + + Y P++I FN +YLL+I +SS DE++ S + Sbjct: 300 VVNNPDSGSAKDQLVADYVFDPLEIGFNSRYLLDIAAQLSS-----DEMICMFADSAAPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG + NA YVLMP+R+ Sbjct: 355 LIRG---------NGDTNALYVLMPVRV 373 >gi|294010896|ref|YP_003544356.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S] gi|292674226|dbj|BAI95744.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S] Length = 370 Score = 288 bits (736), Expect = 1e-75, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A+ DG +++ A+ +++I ++ A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQIVESVSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ T+SAH L+DI RKL +G+Q+S ++ I G + F L + P +FP Sbjct: 61 QVEQPGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178 E + SFEL + LK ++++T FA++TEE RYYLNGI+FH++++ L A ATDG Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA V MP IIVPRK +GE+ ++L D SV++SLS S+I + S ++ Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVDGSVQISLSASKIRFGLGSAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDK L+++ + + VDRV+ +++ + +AVK++L DK+ ++ Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + + DI FN +YLL+I+ I S D V L + + Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDS-----DLVELHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +D++ A YVLMPMR+ Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370 >gi|221640842|ref|YP_002527104.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides KD131] gi|221161623|gb|ACM02603.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides KD131] Length = 372 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGALVGL-SEDPASGRLTVTAGRSVFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F+ + VL+ L ++ FA++TEE RYYLNG+F H+ EE L VATDG Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L + + VS+SE+++ ++M+ Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|83309736|ref|YP_420000.1| DNA polymerase III subunit beta [Magnetospirillum magneticum AMB-1] gi|82944577|dbj|BAE49441.1| DNA polymerase sliding clamp subunit [Magnetospirillum magneticum AMB-1] Length = 379 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 226/387 (58%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ L H ++ER+ TIP+ +V L+ GLL + A+ +++I A+PA Sbjct: 8 MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 67 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T AH Y+IVRKL DG+Q+ + E G ++ + G S F L P +FP Sbjct: 68 VVRPGATTAPAHTFYEIVRKLPDGSQVEIEHDAESG-QLTLRSGRSKFSLACLPVEDFPV 126 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E ++F L+++ LK L++RT FA++TEE RYYLNGI+ H D L AVATDG Sbjct: 127 LSGGELPFTFSLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGVDVLRAVATDG 186 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + + A MP IIVPRK V EI +++ D + VSLSE+++ ++ Sbjct: 187 HRLARVEITLPSGAAGMPGIIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 246 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK L V+C + QAVDRVS +S+ + +A+KL+L ++ Sbjct: 247 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 306 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G A+E + Y P++I FN +YL++I+ + D F + + S Sbjct: 307 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----DTARFAMADAASPTV 361 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + A YVLMPMR+ Sbjct: 362 VR---------EMTDGGAIYVLMPMRV 379 >gi|163745036|ref|ZP_02152396.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45] gi|161381854|gb|EDQ06263.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45] Length = 372 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ + A Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKVAAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA LL++IVRKL DGA I+ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVSATLLHEIVRKLPDGALINLTADTAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ HI E L VATDG Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHIADAESGKALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + ++ A+MP +IVPRK VGE+ ++L + + VS+SE++I ++++ Sbjct: 180 HRLARIDAEMPEGAAEMPGVIVPRKTVGELRKLLDDDEMEIAVSVSETKIRFATPGITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|307295044|ref|ZP_07574886.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1] gi|306879518|gb|EFN10736.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1] Length = 370 Score = 287 bits (735), Expect = 2e-75, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A+ DG +++ A+ +++I ++ A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASSDGAIKLMATDLDLQIVESVSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ T+SAH L+DI RKL +G+Q+S ++ I G + F L + P +FP Sbjct: 61 QVEQAGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178 E + SFEL + LK ++++T FA++TEE RYYLNGI+FH++++ L A ATDG Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA V MP IIVPRK +GE+ ++L + SV++SLS S+I + S ++ Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDK L+++ + + VDRV+ +++ + +AVK++L DK+ ++ Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + + DI FN +YLL+I+ I S D V L + + Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDS-----DLVELHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +D++ A YVLMPMR+ Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370 >gi|163733263|ref|ZP_02140707.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149] gi|161393798|gb|EDQ18123.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149] Length = 372 Score = 287 bits (734), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 147/387 (37%), Positives = 238/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSATTLHEIVRKLPDGALVTLTADSATG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ + + L VATDG Sbjct: 120 MATSEYQSNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADAEGGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L + + ++ VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPEDANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372 >gi|255261800|ref|ZP_05341142.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62] gi|255104135|gb|EET46809.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62] Length = 372 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ERS +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ PA Sbjct: 1 MKISIERSILLKAVAQAQSVVERRNTIPILANVLIEAEGDSATFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L +IVRKL DGA ++ ++ G + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVAAVTLNEIVRKLPDGALVTLTDDSATG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADSDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ + M +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPDGASDMAGVIVPRKTVGELRKLLDDDDVQIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V YN+ ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEEIAVAYNDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|103486201|ref|YP_615762.1| DNA polymerase III subunit beta [Sphingopyxis alaskensis RB2256] gi|98976278|gb|ABF52429.1| DNA polymerase III, beta subunit [Sphingopyxis alaskensis RB2256] Length = 371 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 153/388 (39%), Positives = 234/388 (60%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ LGH ++ER+NTIP+ +VL++A+ G L + A+ ++++ I A Sbjct: 1 MKATIERAVLLKSLGHVQSVVERRNTIPILSNVLIEADGTGQLRLMATDLDLQVVETIAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ TVSAH L++I RKL +G+++S +V + G SNF L + P +FP Sbjct: 61 KVETPGTTTVSAHTLFEIARKLPEGSEVSLAAAE---GKVQVKAGRSNFNLPTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 E + +FEL + L ++++T FA++TEE RYYLNGIF H+ E+ L A ATD Sbjct: 118 VIAEGDLPTNFELPVAELIQIIDKTRFAISTEETRYYLNGIFLHVAEDATGPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA V A MP +IVPRK VGEI ++L + +V++SLS S+I + + + Sbjct: 178 GHRLARYTVTRPDGAAGMPDVIVPRKCVGEIRKLLDEAEGNVEISLSASKIRFQLGNAVL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP +NDK L+V+ +L Q VDRVS ++S + +AVK+ L D++ + Sbjct: 238 TSKLIDGTFPDYSRVIPTANDKLLKVDPKSLFQGVDRVSTIASEKTRAVKVGLDKDRITL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V +P+ G A E + Y+ M+I FN +YL +I+ + D V L +N+ Sbjct: 298 SVTSPENGTAAEELAAAYDSDAMEIGFNARYLSDILGQVDG-----DSVELHLADANAPT 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +K A YVLMPMR+ Sbjct: 353 LIRESEKSP---------ALYVLMPMRV 371 >gi|89069838|ref|ZP_01157173.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516] gi|89044639|gb|EAR50755.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516] Length = 372 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 153/387 (39%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKFSIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGDGVQFRATDLDIEVVDRAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L +IVRKL DGA ++ ++ G + I G SNF L + P +FP Sbjct: 61 VERAGATTVAAVTLNEIVRKLPDGALVTLAEDGGSG-RLQIMAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLK-LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ E ED + L VATDG Sbjct: 120 MASSEYATNFTADAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +MP +IVPRK VGE+ ++L + + VS+SE++I ++++ Sbjct: 180 HRLARIDAALPEGAEEMPGVIVPRKTVGELRKLLDDDEMQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N K L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPANNAKRLEVDASEFAKAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + +DI FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGNAEEELAVAYGDEKLDIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D S A YV+MPMR+ Sbjct: 355 MREGDDTS---------AVYVVMPMRV 372 >gi|84514653|ref|ZP_01002017.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53] gi|84511704|gb|EAQ08157.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53] Length = 372 Score = 286 bits (733), Expect = 3e-75, Method: Compositional matrix adjust. Identities = 151/387 (39%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IEI PA Sbjct: 1 MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAQGDEVHFRATDLDIEIVDKAPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ TVSA L +IVRKL DGA ++ +E+ G + I G SNF L + P+ +FP Sbjct: 61 VDRAGATTVSAVTLNEIVRKLPDGALVTLTEESATG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 +Y +F + VL+ L +++ FA++TEE RYYLNG++ H+ E L VATDG Sbjct: 120 MASSDYAANFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + ++ M +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAELPMGAENMAGVIVPRKTVGELRKLLDDDDMKIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDASEFARAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A E + V Y++ ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNSPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAIYVVMPMRV 372 >gi|83591342|ref|YP_425094.1| DNA polymerase III subunit beta [Rhodospirillum rubrum ATCC 11170] gi|83574256|gb|ABC20807.1| DNA polymerase III, beta subunit [Rhodospirillum rubrum ATCC 11170] Length = 372 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 231/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ +V ++ + + A+ ++EI + A+ Sbjct: 1 MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ T AH LYDIVRKL DG+Q+ + G ++ + G S F L P +FP+ Sbjct: 61 TLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDG-QLVLKAGRSRFSLSCLPVEDFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E+ +SF L ++ L+ L++RT FA++TEE RYYLNGI+ H E L AVATDG Sbjct: 120 LSAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+ + A A MP +IVPRK VGE+ +++ + V LSE +I + + ++ Sbjct: 180 HRLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK L V+C QA DRVS +S+ + +A+K++++ + ++ Sbjct: 240 SKLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G A+E + Y ++I FN +YLL+I+ + V + F D+++ +V Sbjct: 300 ASSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEGGSV---RLTF-ADAASPTVI 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D + +A YVLMPMR+ Sbjct: 356 -----RDVAD-----ASAVYVLMPMRV 372 >gi|126460790|ref|YP_001041904.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC 17029] gi|332559820|ref|ZP_08414142.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N] gi|126102454|gb|ABN75132.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC 17029] gi|332277532|gb|EGJ22847.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N] Length = 372 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGALVGL-SEDPASGRLTVTAGRSVFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F+ + VL+ L ++ FA++TEE RYYLNG++ H+ EE L VATDG Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGPVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L + + VS+SE+++ ++M+ Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|77464921|ref|YP_354425.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides 2.4.1] gi|77389339|gb|ABA80524.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides 2.4.1] Length = 372 Score = 286 bits (731), Expect = 5e-75, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGALVGL-SEDPASGRLTVTAGRSVFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F+ + VL+ L ++ FA++TEE RYYLNG++ H+ EE L VATDG Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGSVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L + + VS+SE+++ ++M+ Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|149912811|ref|ZP_01901345.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b] gi|149813217|gb|EDM73043.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b] Length = 372 Score = 285 bits (730), Expect = 6e-75, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKLSIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A +L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVNAVMLHEIVRKLPDGALVTLTDDSATG-RLTVEAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL L +++ FA++TEE RYYLNG++ H+ + + L VATDG Sbjct: 120 MASSEYASNFSAPAPVLLRLFDKSKFAISTEETRYYLNGVYMHVADAEGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPIGAEDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAAEFAKAVDRVATVSSERSRAVKLTLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|146276061|ref|YP_001166220.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC 17025] gi|145554302|gb|ABP68915.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC 17025] Length = 372 Score = 285 bits (728), Expect = 1e-74, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 231/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P +FP Sbjct: 61 VERPGATTVSAVMLHEIVRKLPDGALVGL-SEDAASGRLTVTAGRSVFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F + VL+ L ++ FA++TEE RYYLNG+F H+ EE L VATDG Sbjct: 120 MASSEYSSNFTAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + M +IVPRK V E+ ++L ++ +KVS+SE+++ ++M+ Sbjct: 180 HRLARIDAPLPEGAEGMAGVIVPRKTVNELRKLLDDDEAQIKVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTGNARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|209966326|ref|YP_002299241.1| DNA polymerase III subunit beta [Rhodospirillum centenum SW] gi|209959792|gb|ACJ00429.1| DNA polymerase III, beta subunit [Rhodospirillum centenum SW] Length = 374 Score = 284 bits (727), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/391 (38%), Positives = 232/391 (59%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ER+ +L LGH ++ER+NTIP+ +V+L+A +G L + A+ ++EI ++PA Sbjct: 1 MKITIERAALLRSLGHVQSVVERRNTIPILSNVMLRAENGELSLTATDMDLEIVESVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS T AH LYDI RKL DG+Q+ + G + + G S F L + P ++P+ Sbjct: 61 IARPGSATAPAHTLYDIARKLPDGSQVEL---DSTGDMLTLRSGRSQFKLGTLPVDDYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE------EDLKLCAV 174 + + F L+++ LK L++RT FA++TEE RYYLNGIF H + E L AV Sbjct: 118 MSGGDMGHRFSLSAADLKALIDRTRFAISTEETRYYLNGIFLHASTARGAGGETPVLRAV 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRLA E+ + A +P +I+PRKAV E+ ++L ++V LS++++ ++ Sbjct: 178 ATDGHRLARVEMPLPEGAAGIPGVIIPRKAVLEVRKLLDEAADRIEVQLSDTKVRFAFDA 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++++ +LIDG FP+Y+ VIP NDK L V+ AVDRV+ +S+ + +AVKLSL Sbjct: 238 ITLTSKLIDGTFPDYERVIPTGNDKVLEVDPRLFAGAVDRVATISTEKSRAVKLSLDRGV 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ +P+ G A E + V Y+ ++I FN +YLL+I I + F + + Sbjct: 298 LTLSASSPEAGSATEELEVVYDAPALEIGFNSRYLLDITQQIEG-----EGARFTMADAG 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R D + +A YVLMPMR+ Sbjct: 353 SPTLVR----DVAD-----ASALYVLMPMRV 374 >gi|126734081|ref|ZP_01749828.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2] gi|126716947|gb|EBA13811.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2] Length = 372 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ A Sbjct: 1 MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDRASAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L +IVRKL DGA ++ ++ G + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVAAVTLNEIVRKLPDGALVTLTEDGASG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDSDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A M +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDGAADMAGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL+L DKL ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF ++S Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNTSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|83855143|ref|ZP_00948673.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1] gi|83941666|ref|ZP_00954128.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36] gi|83842986|gb|EAP82153.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1] gi|83847486|gb|EAP85361.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36] Length = 372 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 236/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ A Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAAAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA IS ++ G + + G SNF L + P +FP Sbjct: 61 VERAGATTVSATTLHEIVRKLPDGALISLTADSAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F+ + VL+ L +++ FA++TEE RYYLNG++ HI++ + L VATDG Sbjct: 120 MATSEYQSNFKAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISDSEGSKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A+MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAPMPEGAAEMPGVIVPRKTVGELRKLLDDDDMEIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ ++ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|159045914|ref|YP_001534708.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12] gi|157913674|gb|ABV95107.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12] Length = 372 Score = 284 bits (726), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 149/388 (38%), Positives = 234/388 (60%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L + A ++ER+NTIP+ +VL++A + +A+ +IE+ + A Sbjct: 1 MKISIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV A L++IVRKL DGA ++ + G + +S G SNF L + P +FP Sbjct: 61 VERAGATTVPAVTLHEIVRKLPDGALVALTHDTAKG-RLEVSAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ E L VATDG Sbjct: 120 MTTTEYTCNFAAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGRSLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L ++ + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDAAEGMPGVIVPRKTVGELRKLLEDDEAQIAVSVSETKIRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP SN ++L V+ + +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPVSNSRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +S+ Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAADPTM 354 Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D +A YV+MPMR+ Sbjct: 355 MREGSDS----------SAIYVVMPMRV 372 >gi|254486821|ref|ZP_05100026.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101] gi|214043690|gb|EEB84328.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101] Length = 372 Score = 283 bits (725), Expect = 2e-74, Method: Compositional matrix adjust. Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ PA Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TVSA L++IVRKL DGA I+ ++ G + + G SNF L + P +FP Sbjct: 61 IERAGATTVSATTLHEIVRKLPDGALITLTSDSAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ HI+E + L VATDG Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISESEGNKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAPMPEGADDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ ++ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|304319870|ref|YP_003853513.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503] gi|303298773|gb|ADM08372.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503] Length = 373 Score = 283 bits (725), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 231/388 (59%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ER+ +L+ L H ++ER+NTIP+ +VL++A G L + A+ +IEI +PA Sbjct: 1 MQVTIERATLLKALHHTQSVVERRNTIPILSNVLMRAQGGSLALTATDLDIEIAETVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G +T SA LYDIV++L DG QIS K + + + + G S F L P+ +FP+ Sbjct: 61 IAEEGGVTASAVTLYDIVKRLPDGGQISLNKSSG-SSRLMLKSGRSEFQLSILPDDDFPT 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 +E +F +++ L L++RT FAM+ EE RYYLNG++ H E L AVATD Sbjct: 120 LSDEAAGATFTISADALGRLLDRTRFAMSQEETRYYLNGVYLHALTEGEGAPSLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + +P +I+PRKAV E+ R+L D V V+++ ++I + + Sbjct: 180 GHRLARLDSPLPPGAEAIPGVIIPRKAVLELRRLLDDADGDVAVTVTPAKIRFAFGDIVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP ND+ ++V+ R+AVDRVS +S+ + ++VKLSL+ D+L + Sbjct: 240 VSKLIDGTFPDYQRVIPSGNDRVMKVDNDAFRRAVDRVSTVSADKTRSVKLSLTEDQLTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V+NP+ G A + ++V + +++ FN +YLL+I D IS + VF + S Sbjct: 300 LVNNPETGSATDELSVDFKSTDLEVGFNARYLLDIADQISG-----ETAVFHFADAASPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + A YVLMP+R+ Sbjct: 355 LVTDEEDE---------GALYVLMPLRV 373 >gi|126730157|ref|ZP_01745969.1| DNA polymerase III subunit beta [Sagittula stellata E-37] gi|126709537|gb|EBA08591.1| DNA polymerase III subunit beta [Sagittula stellata E-37] Length = 372 Score = 283 bits (724), Expect = 3e-74, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L + A ++ER+NTIP+ +VL++A + +A+ +IE+ A Sbjct: 1 MKISMERATLLRAVAQAQSVVERRNTIPILANVLIEAEGETVTFRATDLDIEVLDKAEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G TVSA L++IVRKL DGA + +E G + +S G SNF L + P+ +FP Sbjct: 61 VEKPGGTTVSAVTLHEIVRKLPDGALVVLAEEPGTG-RLTVSAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MASSEYGSNFTAKAEVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGQALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDAPLPDGAADMPGVIVPRKTVGEMRKLLDEDDMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|254295379|ref|YP_003061402.1| DNA polymerase III subunit beta [Hirschia baltica ATCC 49814] gi|254043910|gb|ACT60705.1| DNA polymerase III, beta subunit [Hirschia baltica ATCC 49814] Length = 374 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 151/389 (38%), Positives = 235/389 (60%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++R +++ L H ++ER+NTIP+ +VL+ A L + A+ ++E + A Sbjct: 1 MKLTIDRGALMKALSHVQNVVERRNTIPILSNVLIDAEGTSLRLTATDLDMEASDTTIAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS+T A L+D+VRKL DG+ I + E + I+ G S F L + P +F + Sbjct: 61 IEKPGSVTAPAQTLFDVVRKLPDGSDIGLLLDTET-RRLTITSGRSRFALPTLPADDFQT 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 +EE SFE+ ++ + L+++T FA++TEE RYYLNG++ H E +KL VATDG Sbjct: 120 MSKEEAPNSFEIPAADFRRLIDKTKFAISTEETRYYLNGVYMHGTEVGGAVKLRTVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLS 236 HRLA+AE D +P II+PRKA+ EI R+L +++DS V VS SES+I + + Sbjct: 180 HRLALAEADAPKGAETLPGIIIPRKAIAEIRRLLDDAAQDSDVSVSTSESKIVVKVGDAV 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +LIDG FP+Y VIP SN K L + + + AVDRV+ +S+ R ++VKL+L +DKL Sbjct: 240 ITSKLIDGSFPDYSRVIPQSNSKILVLKNSEFKSAVDRVATVSAERSRSVKLTLENDKLV 299 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + V N + G+ +E + Y++ PM+I FN +YLL++ I DE+ F L+ S SS Sbjct: 300 LQVSNAETGQGVEELEAQYSDEPMEIGFNARYLLDVTQQIEG-----DEIRFELNDSASS 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + A YVLMP+R+ Sbjct: 355 ARV----TDLADQ-----GAQYVLMPLRV 374 >gi|94495788|ref|ZP_01302367.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58] gi|94424480|gb|EAT09502.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58] Length = 370 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 233/387 (60%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A+ DG +++ A+ ++++ +I A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQVVESISA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ T+SAH L+DI RKL +G+Q+S + ++ I G + F L + P +FP Sbjct: 61 QVEQPGATTISAHTLFDIARKLPEGSQVSLQAAD---GKMLIQAGRARFNLSTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178 E + FEL + LK ++++T FA++TEE RYYLNGI+FH++EE L A ATDG Sbjct: 118 VIAEGDLPTQFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSEEGQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA V MP IIVPRK +GE+ ++L + SV++SLS S+I + S ++ Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L+++ + VDRV+ +++ + +AVK++L D++ ++ Sbjct: 238 SKLIDGTFPDYSRVIPTGNDKLLKIDPRSFEDGVDRVATIATEKTRAVKMTLDKDRITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + + DI FN +YLL+I+ I S D V L + + Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDS-----DLVELHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D A YVLMPMR+ Sbjct: 353 IRENDASP---------ALYVLMPMRV 370 >gi|23014790|ref|ZP_00054590.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 372 Score = 283 bits (723), Expect = 4e-74, Method: Compositional matrix adjust. Identities = 147/387 (37%), Positives = 226/387 (58%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ L H ++ER+ TIP+ +V L+ GLL + A+ +++I A+PA Sbjct: 1 MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T AH Y+IVRKL DG+Q+ + E G ++ + G S F L P +FP Sbjct: 61 VVRPGATTAPAHTFYEIVRKLPDGSQVEIEFDAESG-QLTLRSGRSKFSLACLPVEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 + +SF L+++ LK L++RT FA++TEE RYYLNGI+ H D L AVATDG Sbjct: 120 LSGGDLPFSFTLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGIDVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + + A MP +IVPRK V EI +++ D + VSLSE+++ ++ Sbjct: 180 HRLARVEITLPSGAAGMPGVIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK L V+C + QAVDRVS +S+ + +A+KL+L ++ Sbjct: 240 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G A+E + Y P++I FN +YL++I+ + + F + + S Sbjct: 300 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----ETARFAMADAASPTV 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + A YVLMPMR+ Sbjct: 355 VR---------EMTDGGAIYVLMPMRV 372 >gi|288959567|ref|YP_003449908.1| DNA polymerase III subunit beta [Azospirillum sp. B510] gi|288911875|dbj|BAI73364.1| DNA polymerase III subunit beta [Azospirillum sp. B510] Length = 376 Score = 282 bits (721), Expect = 6e-74, Method: Compositional matrix adjust. Identities = 150/391 (38%), Positives = 229/391 (58%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ER+ +L LGH ++ER+NTIP+ +VLL+A DG L + A+ ++EI +PA+ Sbjct: 1 MNITIERAALLRSLGHVQSVVERRNTIPILSNVLLRAGDGELSLAATDMDLEIVETVPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G T AH L+DIVRKL DG+Q+ + GT + + G S F L P +FP Sbjct: 61 VGRPGGTTAPAHTLFDIVRKLPDGSQVELDIGGD-GTILTLRAGRSQFKLSCLPVEDFPQ 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK------LCAV 174 + ++F + ++ L+ L++RT FA++TEE RYYLNGI+ H + + L AV Sbjct: 120 LSSGDLKHNFSVPAADLRGLIDRTRFAISTEETRYYLNGIYLHAAKSKMGGLETPVLRAV 179 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRLA E+ + +P +I+PRK V EI +++ +++S+S+++I +S Sbjct: 180 ATDGHRLARVEMPLPDGAEGIPGVIIPRKTVTEIRKLVDEAADRIELSMSDNKIRFGFDS 239 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + ++ +LIDG FP+Y+ VIP NDK + V+ AVDRV+ +S+ + +AVKLSL Sbjct: 240 VVVTSKLIDGTFPDYERVIPVGNDKVMEVDAKLFAAAVDRVATISTEKSRAVKLSLVRGA 299 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ +P+ G A E + V Y E P++I FN +YLL+I I + F L + Sbjct: 300 LTLSATSPESGSATEELEVNYAEAPLEIGFNSRYLLDITQQIEG-----EGAQFTLADAA 354 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S IR D ++ A YVLMPMR+ Sbjct: 355 SPTIIR----DVADS-----TALYVLMPMRV 376 >gi|294675559|ref|YP_003576174.1| DNA polymerase III subunit beta [Rhodobacter capsulatus SB 1003] gi|294474379|gb|ADE83767.1| DNA polymerase III, beta subunit [Rhodobacter capsulatus SB 1003] Length = 372 Score = 282 bits (721), Expect = 7e-74, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DG+ + + G +++ G S+F L + P +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGSLVQLSDDAAAG-RLSVMAGRSSFNLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F + VLK L +++ FA++TEE RYYLNG++ H+ E+ L VATDG Sbjct: 120 MASSEYTANFAAKAGVLKRLFDKSKFAISTEETRYYLNGVYMHVATGEDGPALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L ++ + VS+SE+++ ++++ Sbjct: 180 HRLARIDAVLPEGANGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPMGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDAGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|119385559|ref|YP_916614.1| DNA polymerase III subunit beta [Paracoccus denitrificans PD1222] gi|119376154|gb|ABL70918.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222] Length = 372 Score = 281 bits (720), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 230/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+D+++ + A ++ER+NTIP+ +VL++A + +A+ + EI PA Sbjct: 1 MKFSIERADLVKAVSQAQSVVERRNTIPILANVLIEAAPEGVSFRATDLDTEIVDRAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L DI RKL DGA + + G +++ G SNF L + P +FP Sbjct: 61 VERPGATTVSAGMLNDIARKLPDGALVQLSLDAASG-RLSVQAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F ++VL+ L +++ FA++ EE RYYLNG++ H+ E+ L VATDG Sbjct: 120 MSSSEYGANFSAPAAVLRRLFDKSKFAISNEETRYYLNGVYMHVAQTEDGPGLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK V E+ ++L ++ + VS+SE+++ +++++ Sbjct: 180 HRLARIDAPLPAGAEDMPGVIVPRKTVAELRKLLDDDEAEIAVSVSETKVRFATPTITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPSGNARKLEVDAGDFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + P++I FN KYL EI I + VF + S + Sbjct: 300 VNAPDAGAADEELPVAYADEPLEIGFNAKYLHEIASQIER-----ENAVFLFNGSGDAAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + +A YV+MPMR+ Sbjct: 355 IR---------EGGDTSAVYVVMPMRV 372 >gi|144900239|emb|CAM77103.1| DNA polymerase III subunit beta [Magnetospirillum gryphiswaldense MSR-1] Length = 372 Score = 281 bits (719), Expect = 1e-73, Method: Compositional matrix adjust. Identities = 149/387 (38%), Positives = 223/387 (57%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ L H ++ER+NTIP+ +V L+ G L + A+ +++I PA Sbjct: 1 MKLTIERAQLLKSLAHVQSVVERRNTIPILSNVKLEGRPGSLSLNATDMDLDIIETAPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T AH Y+IVRKL DG+Q+ + + G + + G S F L P +FP Sbjct: 61 VSRPGATTAPAHTFYEIVRKLPDGSQVEIEHDADTGL-MTLRSGRSKFTLSCLPVEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E ++F L ++ LK LV+RT FA++TEE RYYLNGI+ H L AVATDG Sbjct: 120 LSGGELPFTFCLTAAELKALVDRTRFAISTEETRYYLNGIYLHAATTPGGEVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA EV + A MP +I+PRK V E+ +++ + V VSLSE+++ ++ Sbjct: 180 HRLARVEVTLPEGAAGMPGVIIPRKTVQEMRKLIDETEGEVTVSLSETKLRFAFADAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK+L V+ + QAVDRVS +S+ + +A+KLSL + ++ Sbjct: 240 SKLIDGTFPDYERVIPADNDKQLDVDVKSFAQAVDRVSAISTEKSRAIKLSLEKGTVTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +P+ G A E + Y P++I FN +YLL+I+ + D+ F + + S Sbjct: 300 ASSPENGSATEEIEAQYESTPLEIGFNSRYLLDILGQVEG-----DKACFSMADAASPTV 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D N A YVLMPMR+ Sbjct: 355 VR----DGVN-----AGAIYVLMPMRV 372 >gi|319898310|ref|YP_004158403.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73] gi|319402274|emb|CBI75813.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73] Length = 373 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 153/387 (39%), Positives = 239/387 (61%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I + RS +L+ L R++ER+N IP+ +VL+ A+ G +++KA+ ++E+ + + Sbjct: 1 MRIIIGRSQLLKSLSRVHRVVERRNAIPILSNVLIDASSGGMQLKATDLDLEVIESSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D +++ + + ++++ G +NF LQ P+ +FP Sbjct: 61 IEKAGAITVPAHLLYDIVRKLPDDSEVILEVDENQPSTMSVTSGCANFRLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FHI ++ KL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHIIDDGTSKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ ++ Sbjct: 181 RLAQVDIEAPSGAGGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L +N + AVDRVS +SS R AVKL++ L Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLVINRQDFSSAVDRVSTISSDRGCAVKLTIEKGLLRFV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y ++I FN +YLL+I ISS E++F L + Sbjct: 301 VNNPDSGSAEDQLVADYASDLLEIGFNSRYLLDIAAQISS-----HEMIFMLADPGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG + NA YVLMP+R+ Sbjct: 356 IRG---------NGDTNALYVLMPIRV 373 >gi|23006928|ref|ZP_00049021.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 328 Score = 281 bits (718), Expect = 2e-73, Method: Compositional matrix adjust. Identities = 149/328 (45%), Positives = 207/328 (63%), Gaps = 5/328 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+ + L +KA+ +IE+T +PA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGEDGLRLKATDLDIEVTETVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S + G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGDTG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E +SF +A++ LK L+E+T FA++TEE RYYLNGI+ H E D LKL AVATDG Sbjct: 120 LAAGELPHSFSIAAAELKLLIEKTQFAISTEETRYYLNGIYLHTVEVDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237 HRLA E MP IIVPRKAV EI +++ SV+V LS ++I L +++ Sbjct: 180 HRLARVETAAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL+++ ++ + Sbjct: 240 ISKLIDGTFPDYQRVIPSGNDKHLTVVRDAFAKAVDRVSTISSERGRAVKLAMADGRVAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFN 325 +V NPD G E+ +DI F Sbjct: 300 SVTNPDAGSRTENSTSITRPW-LDIGFK 326 >gi|254465740|ref|ZP_05079151.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I] gi|206686648|gb|EDZ47130.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I] Length = 373 Score = 280 bits (716), Expect = 3e-73, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 235/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLAVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E L AVATD Sbjct: 120 MASSEYHSNFAAKAAVLRRLFDKSKFAISTEETRYYLNGVYLHVANGAEGGKALRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 GHRLARIDAELPLGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ QAVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFAQAVDRVATVSSERSRAVKLQLEEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V YN+ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYNDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDESAVYVVMPMRV 373 >gi|56551876|ref|YP_162715.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241761806|ref|ZP_04759892.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543450|gb|AAV89604.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241373720|gb|EER63280.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 369 Score = 279 bits (714), Expect = 4e-73, Method: Compositional matrix adjust. Identities = 147/386 (38%), Positives = 235/386 (60%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A ++G +++ A+ ++++ + A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G TVSAH+L++IVRKL DG+QI + ++ I G S F L + P +FP Sbjct: 61 EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E F L + LK ++++T FA++ +E RYYLNGIF H+ +++ + A ATDGH Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + A MP +I+PRK V E+ ++L + +K+SLS S+I ++ ++ Sbjct: 178 RLACVTIPAPAGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP +NDK L+V +L Q VDRV+ ++S + +AVK+S+ + K+ ++V Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G A E + Y+ P+DI FN +YLL+I+ I S D+ L + + I Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D+ + A YVLMPMR+ Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369 >gi|85374293|ref|YP_458355.1| DNA polymerase III subunit beta [Erythrobacter litoralis HTCC2594] gi|84787376|gb|ABC63558.1| DNA polymerase III beta subunit [Erythrobacter litoralis HTCC2594] Length = 375 Score = 279 bits (714), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 158/393 (40%), Positives = 232/393 (59%), Gaps = 26/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAI-P 58 MK T+ER+ +L L H ++ER+NTIP+ ++L++A DG +++ A+ ++++ + Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNILIEAGDGSAVKVMATDLDLQVVETMNA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 ASV+ GS TVSAHLL+DI RKL DG+Q+S +N + I G S F L + P+ + Sbjct: 61 ASVESSGSTTVSAHLLFDIARKLPDGSQVSLEVADNRM----TIKAGRSRFQLPTLPKDD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVAT 176 FP E + SFE+ + L L++RT FA++TEE RYYLNGIF H+++ED L A AT Sbjct: 117 FPVIVEGDLPTSFEIPAKTLAELIDRTRFAISTEETRYYLNGIFLHVSDEDTPVLKAAAT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235 DGHRLA + MP +IVPRKAVGE+ ++L + D +V V LS S+I + Sbjct: 177 DGHRLARFTLARPDGADGMPDVIVPRKAVGELRKLLEERMDGNVVVDLSASKIRFTLGGE 236 Query: 236 SMSV---RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 +V +LIDG FP+Y VIP NDK L+V+ + + VDRV+ +++ + +AVK+ L + Sbjct: 237 GGTVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKSFFEGVDRVATIATEKTRAVKMGLDA 296 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 DK+ ++V +PD G A E + Y +I FN YL +I+ I S D V L Sbjct: 297 DKVTLSVTSPDNGTASEELAAEYKSEGFEIGFNANYLKDILSQIDS-----DMVELHLAD 351 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + IR KD A YVLMPMR+ Sbjct: 352 AGAPTLIR---------KDENSPALYVLMPMRV 375 >gi|89052493|ref|YP_507944.1| DNA polymerase III subunit beta [Jannaschia sp. CCS1] gi|88862042|gb|ABD52919.1| DNA polymerase III, beta subunit [Jannaschia sp. CCS1] Length = 372 Score = 279 bits (713), Expect = 5e-73, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 231/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKLSIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGETVSFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DG+ +S E+ + + I G S+F L + P +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGSLVSL-TEDTTTSRLTIEAGRSSFQLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 +Y +F + L+ L +++ FA++TEE RYYLNG++FHI E D L AVATDG Sbjct: 120 MASTDYAANFSAKAPELRRLFDKSKFAISTEETRYYLNGVYFHIAEGDNGKALRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +MP +IVPRK VGE+ ++L D+ + VS+SE++I ++++ Sbjct: 180 HRLARIDSALPDGAQEMPGVIVPRKTVGELRKLLDDDDAQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + + V+ + +AVD V+ +SS R +AVK++L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPAGNTRRMEVDAGDFAKAVDLVATVSSERSRAVKMALDEDRLMLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A + V Y + ++I FN KYLLEI + +V + VF S Sbjct: 300 VNAPDSGNAEAELVVAYADEKLEIGFNAKYLLEI-----ASQVDRENAVFMFSSPAEPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + DS A YV+MPMR+ Sbjct: 355 MREGNDDS---------AIYVVMPMRV 372 >gi|260752565|ref|YP_003225458.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551928|gb|ACV74874.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 369 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 146/386 (37%), Positives = 234/386 (60%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A ++G +++ A+ ++++ + A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G TVSAH+L++IVRKL DG+QI + ++ I G S F L + P +FP Sbjct: 61 EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E F L + LK ++++T FA++ +E RYYLNGIF H+ +++ + A ATDGH Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + MP +I+PRK V E+ ++L + +K+SLS S+I ++ ++ Sbjct: 178 RLACVTIPAPVGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP +NDK L+V +L Q VDRV+ ++S + +AVK+S+ + K+ ++V Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G A E + Y+ P+DI FN +YLL+I+ I S D+ L + + I Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D+ + A YVLMPMR+ Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369 >gi|254439754|ref|ZP_05053248.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307] gi|198255200|gb|EDY79514.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307] Length = 372 Score = 277 bits (708), Expect = 2e-72, Method: Compositional matrix adjust. Identities = 147/387 (37%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A+ +A+ +IE+ A Sbjct: 1 MKISIERASLLKAVAQAQSVVERRNTIPILANVLIEASGDEATFRATDLDIEVVDKATAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L +IVRKL DGA ++ ++ G + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLNEIVRKLPDGALVTLTDDSASG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 +Y +F + VL+ L +++ FA++TEE RYYLNG++ H++E D L VATDG Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + M +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDDMMIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N +++ V+ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E ++V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372 >gi|296285052|ref|ZP_06863050.1| DNA polymerase III subunit beta [Citromicrobium bathyomarinum JL354] Length = 375 Score = 276 bits (706), Expect = 3e-72, Method: Compositional matrix adjust. Identities = 156/392 (39%), Positives = 230/392 (58%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAI-P 58 MK T+ER+ +L L H ++ER+NTIP+ +VL+ A+ G +++ A+ ++++ + Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDADAGGGVKVMATDLDLQVVETMTA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+ITVSAHLL+DI RKL DG+Q+S + + + G S F L + P +F Sbjct: 61 ASVESAGAITVSAHLLFDIARKLPDGSQVSLETAD---NRMVVKAGRSRFQLPTLPRDDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATD 177 P E E SFEL + L +++RT FA++TEE RYYLNGIF H+++E L A ATD Sbjct: 118 PVIVEGELPTSFELPARELAEMIDRTRFAISTEETRYYLNGIFLHVSDEARPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234 GHRLA +D MP +IVPRKAVGE+ ++L DS+V++ LS S+I + Sbjct: 178 GHRLARYTLDRPEGAEGMPDVIVPRKAVGELRKLLEEALDSNVQIDLSASKIRFALGGEG 237 Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ +LIDG FP+Y VIP NDK LR++ Q VDRV+ +++ + +AVK+ L D Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLRLDPKAFFQGVDRVATIATEKTRAVKMGLDED 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 K+ ++V +PD G A E + Y +I FN YL +I+ I S D V L + Sbjct: 298 KVTLSVTSPDNGTAAEEIAAEYKAEGFEIGFNANYLKDILGQIDS-----DTVELHLADA 352 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR +D A YVLMPMR+ Sbjct: 353 GAPTLIR---------RDENSPALYVLMPMRV 375 >gi|114769643|ref|ZP_01447253.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255] gi|114549348|gb|EAU52230.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255] Length = 372 Score = 276 bits (705), Expect = 5e-72, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ERS +L+ + A ++ER+NTIP+ +VL++A G + +A+ +IE+ + Sbjct: 1 MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AH L++IVRKL DGA + ++ +++ G S+F L + P +FP Sbjct: 61 VERAGATTVGAHTLHEIVRKLPDGAMVEL-TDDATANRLDVVAGRSSFSLATLPREDFPI 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F S L+ L +++ FA++TEE RYYLNG++ H + E L VATDG Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +P +IVPRK VGE+ ++L + + VS+SE++I + + ++ Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ QAVDRVS +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDESAVYVVMPMRV 372 >gi|254451638|ref|ZP_05065075.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238] gi|198266044|gb|EDY90314.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238] Length = 372 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 145/387 (37%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L+ + A ++ER+NTIP+ +VL++A+ +A+ +IE+ A Sbjct: 1 MKLSIERASLLKAVAQAQSVVERRNTIPILANVLIEASGAEATFRATDLDIEVVDKATAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS TVSA L +IVRKL DGA ++ +++ G + I G SNF L + P+ +FP Sbjct: 61 VERAGSTTVSAVTLNEIVRKLPDGALVTLTEDSASG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 +Y +F + VL+ L +++ FA++TEE RYYLNG++ H++E D L VATDG Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + M +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDEMMIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N +++ V+ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E ++V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372 >gi|297184289|gb|ADI20406.1| DNA polymerase sliding clamp subunit (pcna homolog) [uncultured alpha proteobacterium EB080_L43F08] Length = 372 Score = 276 bits (705), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ERS +L+ + A ++ER+NTIP+ +VL++A G + +A+ +IE+ + Sbjct: 1 MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AH L++IVRKL DGA + ++ +++ G S+F L + P +FP Sbjct: 61 VERAGATTVGAHTLHEIVRKLPDGAMVEL-TDDATANRLDVVAGRSSFSLATLPREDFPI 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F S L+ L +++ FA++TEE RYYLNG++ H + E L VATDG Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +P +IVPRK VGE+ ++L + + VS+SE++I + + ++ Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ QAVDRVS +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVGYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDESAVYVVMPMRV 372 >gi|310816810|ref|YP_003964774.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25] gi|308755545|gb|ADO43474.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25] Length = 372 Score = 275 bits (704), Expect = 6e-72, Method: Compositional matrix adjust. Identities = 144/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ + A ++ER+N IP+ +VL+ A ++ +A+ +IE+ + A Sbjct: 1 MKFSIERSALLKAVAQAQSVVERRNAIPILSNVLIAAEGAAVQFRATDLDIEVQDSAVAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A +L +IVRKL DGA ++ + + I+ G S F L + P+ +FP+ Sbjct: 61 VEQAGAATVNAAMLNEIVRKLPDGALVAITYDPS-AERLTIAAGRSTFTLATLPQQDFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 ++ SF + +L+ L +++ FA++TEE RYYLNG++FHI EE L AVATDG Sbjct: 120 MASADFEASFTAPAPLLRRLFDKSKFAISTEETRYYLNGVYFHIATGEEGPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK VGE+ ++L ++ + VS+SE++I +++++ Sbjct: 180 HRLARIDAPLPDGAAGMPGVIVPRKTVGELRKLLDDDNALIAVSVSETKIRFATPNITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALEDDRLLLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +PD G A E + V Y + ++I FN KYL EI + +V + VF L+ Sbjct: 300 VQSPDTGAAEEELVVAYADERLEIGFNAKYLQEI-----AAQVDRENAVFMLNGPGDPAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +A YV+MPMR+ Sbjct: 355 MR---------EGGDTSAVYVVMPMRV 372 >gi|260431697|ref|ZP_05785668.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415525|gb|EEX08784.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 273 bits (699), Expect = 2e-71, Method: Compositional matrix adjust. Identities = 148/388 (38%), Positives = 236/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQVLFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++++L+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGPEGGKVLRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ A MP +IVPRK VGE+ ++L D + VS+SE+++ +++ Sbjct: 180 GHRLARIDADLPAGAEDMPGVIVPRKTVGELRKLLEDDDMDIAVSVSETKVRFATPDITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP +N ++L V+ QAVDRV+ +SS R +AVKL L +DKL + Sbjct: 240 TSKVIDGTFPDYTRVIPQNNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLENDKLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYL EI + +V + VF +S+ Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLQEI-----ASQVDRENAVFLFNSAGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373 >gi|149184745|ref|ZP_01863063.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21] gi|148832065|gb|EDL50498.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21] Length = 374 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 153/392 (39%), Positives = 229/392 (58%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK T+ER+ +L L H ++ER+NTIP+ +VL++A L + A+ ++++ I A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAEGNGLRVMATDLDLQVVEHIEAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 SV+ G+ITVSAHLL+DI RKL +G+Q+S EN + ++ G S F L + P +F Sbjct: 61 SVESDGAITVSAHLLFDIARKLPEGSQVSLETAENRM----DVKAGRSRFKLPTLPRDDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATD 177 P E + SF L + L +++RT FA++TEE RYYLNGIF H+++ED L A ATD Sbjct: 117 PMIVEGDLPTSFSLPAKTLAEMIDRTRFAISTEETRYYLNGIFLHVSDEDQPVLKAAATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234 GHRLA + MP +IVPRKAV E+ ++L K D V++ LS S+I + Sbjct: 177 GHRLARFTLARPEGAEGMPDVIVPRKAVAELRKLLDEKMDGDVQIDLSASKIRFTLGGEG 236 Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ +LIDG FP+Y VIP NDK L+++ + VDRV+ +++ + +AVK+ L D Sbjct: 237 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKIDPKSFFAGVDRVATIATEKTRAVKMGLDKD 296 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ +TV +PD G A E + Y +I FN YL +I+ I S D+V L + Sbjct: 297 RVTLTVTSPDNGTASEELAAEYGSDGFEIGFNAGYLKDILSQIDS-----DQVEIHLADA 351 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR K++ A YVLMPMR+ Sbjct: 352 GAPTLIR---------KNDDSPALYVLMPMRV 374 >gi|114568556|ref|YP_755236.1| DNA polymerase III subunit beta [Maricaulis maris MCS10] gi|114339018|gb|ABI64298.1| DNA polymerase III, beta subunit [Maricaulis maris MCS10] Length = 372 Score = 273 bits (699), Expect = 3e-71, Method: Compositional matrix adjust. Identities = 150/387 (38%), Positives = 225/387 (58%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++E++NTIP+ +VL+ A A+ +IEI AS Sbjct: 1 MKLTIERATLLKALGHVQAVVEKRNTIPILSNVLISAGPDGASFAATDLDIEILETTDAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G +T AH LYDI RKL DGA ++ + N + + G S+F L S P +FP Sbjct: 61 CDGEGLVTAPAHTLYDITRKLPDGADVTL-EMNGSDPRLTLKAGRSSFSLPSLPPGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ + F++ + L L+++T FA++TEE RYYLNGI H ++D + L AVATDG Sbjct: 120 MPTEDLEHRFQVPARELARLIDKTRFAISTEETRYYLNGIHLHAADQDGRKTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+AEVD+ MP +IVPRK V E+ R+L D V+VS+SE +I + ++ Sbjct: 180 VRLALAEVDLPDGADGMPGVIVPRKTVQEVKRLLEDADDDVEVSVSEGKIRFRLGRAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP N + + V +AVDRV+ +S + ++VKLSL +D L + Sbjct: 240 SKLIDGAFPDYERVIPRGNTRLMSVENKRFAEAVDRVATISVEKSRSVKLSLGADALTLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NP+ G+A E + V Y++ I FN +Y+L++ I DE F + S Sbjct: 300 VNNPESGQAEEELAVSYSDEGFAIGFNARYMLDVASQIEG-----DEARFHFADAASPAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS + +A YVLMP+R+ Sbjct: 355 V----TDSGDP-----DALYVLMPLRV 372 >gi|254510311|ref|ZP_05122378.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221534022|gb|EEE37010.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 373 Score = 273 bits (697), Expect = 4e-71, Method: Compositional matrix adjust. Identities = 147/388 (37%), Positives = 236/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQALFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 EY +F ++++L+ L +++ FA++TEE RYYLNG++ H+ ++ L VATD Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGSDGGKVLRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ A +P +IVPRK VGE+ ++L + + VS+SE++I +++ Sbjct: 180 GHRLARIDADLPDGAADLPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKIRFATPDITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N ++L V+ QAVDRV+ +SS R +AVKL L +DKL + Sbjct: 240 TSKVIDGTFPDYTRVIPQGNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLDADKLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +S+ Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSAGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373 >gi|163743747|ref|ZP_02151121.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10] gi|161383008|gb|EDQ07403.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10] Length = 373 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/389 (37%), Positives = 236/389 (60%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A +++ +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYHSNFTANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D+ +A YV+MPMR+ Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373 >gi|163738135|ref|ZP_02145551.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107] gi|161388751|gb|EDQ13104.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107] Length = 373 Score = 271 bits (693), Expect = 1e-70, Method: Compositional matrix adjust. Identities = 147/389 (37%), Positives = 236/389 (60%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A +++ +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYHSNFSANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D+ +A YV+MPMR+ Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373 >gi|259417199|ref|ZP_05741118.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B] gi|259346105|gb|EEW57919.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B] Length = 373 Score = 270 bits (689), Expect = 3e-70, Method: Compositional matrix adjust. Identities = 149/389 (38%), Positives = 237/389 (60%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLNADAATG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLK-LCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E K L VATD Sbjct: 120 MATSEYHSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y++ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D+ +A YV+MPMR+ Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373 >gi|254474541|ref|ZP_05087927.1| DNA polymerase III, beta subunit [Ruegeria sp. R11] gi|214028784|gb|EEB69619.1| DNA polymerase III, beta subunit [Ruegeria sp. R11] Length = 373 Score = 269 bits (688), Expect = 4e-70, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYHSNFTANAAILRRLFDKSKFAISTEETRYYLNGVYMHVADAVEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLQLDDDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y++ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFLFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDESAVYVVMPMRV 373 >gi|99079843|ref|YP_611997.1| DNA polymerase III subunit beta [Ruegeria sp. TM1040] gi|99036123|gb|ABF62735.1| DNA polymerase III, beta subunit [Ruegeria sp. TM1040] Length = 373 Score = 269 bits (688), Expect = 5e-70, Method: Compositional matrix adjust. Identities = 149/389 (38%), Positives = 237/389 (60%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLDADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLK-LCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H+ E K L VATD Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y++ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D+ +A YV+MPMR+ Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373 >gi|87199450|ref|YP_496707.1| DNA polymerase III subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|87135131|gb|ABD25873.1| DNA polymerase III, beta subunit [Novosphingobium aromaticivorans DSM 12444] Length = 375 Score = 269 bits (687), Expect = 6e-70, Method: Compositional matrix adjust. Identities = 151/392 (38%), Positives = 231/392 (58%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L L H ++ER+NTIP+ +VL++A D + + A+ +++I + A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAAPDSTVRLMATDLDLQIIETMSA 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 SV+ G+ITVSAHLL+DI RKL DG+Q+S + + + G S F L + P +F Sbjct: 61 VSVEAPGAITVSAHLLFDIARKLPDGSQVSLETSDN---RMIVKAGRSRFQLPTLPRDDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATD 177 P E + SFE+ + L L++RT FA++TEE RYYLNGIF H++++ L A ATD Sbjct: 118 PVIVEGDLPTSFEIPARTLAELIDRTRFAISTEETRYYLNGIFLHVSDDPQPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI---E 233 GHRLA + MP +IVPRK VGE+ ++L DS+V + LS S+I + Sbjct: 178 GHRLARFTITRPDGAEGMPDVIVPRKCVGELRKLLEEVLDSAVLIDLSASKIRFTLGGEN 237 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ +LIDG FP+Y VIP NDK L+++ + + VDRV+ +++ + +AVK++L +D Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKLDPRSFFEGVDRVATIATEKTRAVKMALEND 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ ++V +PD G A E + Y+ +I FN YL +I+ I D V L + Sbjct: 298 RVTLSVTSPDNGTAAEELPADYSSTGFEIGFNANYLKDILSQIDG-----DTVELHLADA 352 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR KD+K A YVLMPMR+ Sbjct: 353 GAPTLIR---------KDDKSAALYVLMPMRV 375 >gi|126738626|ref|ZP_01754331.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6] gi|126720425|gb|EBA17131.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6] Length = 373 Score = 269 bits (687), Expect = 7e-70, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G +++ G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTSDAATG-RLSVDAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H++ E L VATD Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDAPLPLGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLEEDRLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDESAVYVVMPMRV 373 >gi|86139416|ref|ZP_01057985.1| DNA polymerase III subunit beta [Roseobacter sp. MED193] gi|85823919|gb|EAQ44125.1| DNA polymerase III subunit beta [Roseobacter sp. MED193] Length = 373 Score = 268 bits (685), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 146/389 (37%), Positives = 234/389 (60%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDVAQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H++ E L VATD Sbjct: 120 MASSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKVLRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDASLPVGAEDMPGVIVPRKTVGEMRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDADEFARAVDRVATVSSERSRAVKLQLEEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 +R G D+ +A YV+MPMR+ Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373 >gi|296532158|ref|ZP_06894919.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis ATCC 49957] gi|296267517|gb|EFH13381.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis ATCC 49957] Length = 375 Score = 268 bits (684), Expect = 1e-69, Method: Compositional matrix adjust. Identities = 154/401 (38%), Positives = 226/401 (56%), Gaps = 42/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +V+R+ +L+ L H ++ER+NTIP+ +V+L A DG L + A+ EI I +P Sbjct: 1 MKFSVDRAVLLKALAHVQSVVERRNTIPILANVMLAAQDGTLTLTATDMEIAIVEDVPGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS------- 112 +V G T A LY+IVRKL DGA++ E++ + GD+ L++ Sbjct: 61 TVSRAGRTTAPAATLYEIVRKLPDGAKV----------ELDHAGGDAPLALRAGRFATSL 110 Query: 113 --FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 P +FPS E + + F++ ++L+ LV+RT FA++TEE RYYLNGI+ H E D + Sbjct: 111 MVLPVEDFPSMTEGKLPHGFQIPPALLRELVDRTKFAISTEETRYYLNGIYLHATEVDGQ 170 Query: 171 --LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L AVATDGHRLA E + MP +IVPRK V EI ++ +++V LS+++I Sbjct: 171 KVLRAVATDGHRLARVEEPLPEGAEGMPGVIVPRKTVNEIRKLADETGDAIEVKLSDTKI 230 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 S+ ++ +LIDG FP Y+ VIP NDK + V+ AV RV+ +SS R + VKL Sbjct: 231 SFAFGSVRLTSKLIDGTFPEYERVIPRGNDKIMTVDKKAFADAVSRVAAISSERSRPVKL 290 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 SL D L +T +PD G+A E ++ V Y P++I F +YL +I D I+ ++ Sbjct: 291 SLKQDSLTLTASSPDQGQAEEELDNGAVSYGSGPIEIGFQARYLADITDQIA------EK 344 Query: 346 VVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V FR D S +V + K A YVLMPMR+ Sbjct: 345 VEFRFADGSAPTVVVDAA----------KPEALYVLMPMRV 375 >gi|85708877|ref|ZP_01039943.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1] gi|85690411|gb|EAQ30414.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1] Length = 375 Score = 265 bits (677), Expect = 8e-69, Method: Compositional matrix adjust. Identities = 151/393 (38%), Positives = 228/393 (58%), Gaps = 26/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 MK T+ER+ +L L H ++ER+NTIP+ +VL+ A+DG +++ A+ ++++ + A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDASDGGSVKVMATDLDLQVVETMNA 60 Query: 60 S-VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 S V+ G+ITVSAHLL+DI RKL DGAQ+S EN + + G + F L + P + Sbjct: 61 SSVESPGAITVSAHLLFDIARKLPDGAQVSLETAENRM----EVKAGRARFKLPTLPRDD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVAT 176 FP E + SFE+ + L +++ T FA++TEE RYYLNGIF H+ +ED L A AT Sbjct: 117 FPVIVEGDLPTSFEIPARTLAQMIDATRFAISTEETRYYLNGIFLHVTDEDEPVLKAAAT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES- 234 DGHRLA + MP +IVPRKAV E+ ++L D +V+V LS S+I + Sbjct: 177 DGHRLARFTLARPDGAEGMPDVIVPRKAVAELRKLLEEALDGAVQVDLSASKIRFTLGGE 236 Query: 235 --LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + ++ +LIDG FP+Y VIP NDK L+V+ + VDRV+ +++ + +AVK+ L + Sbjct: 237 GGVVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKLFFEGVDRVATIATEKTRAVKMGLDA 296 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 DK+ ++V +PD G A E + Y +I FN YL +I+ + +E+ L Sbjct: 297 DKVTLSVTSPDNGNAAEELMADYKSDGFEIGFNANYLKDILGQFDA-----EEIELHLAD 351 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + IR D A YVLMPMR+ Sbjct: 352 AGAPTLIRESDTSP---------ALYVLMPMRV 375 >gi|329113488|ref|ZP_08242269.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001] gi|326697313|gb|EGE48973.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001] Length = 374 Score = 265 bits (676), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 148/390 (37%), Positives = 223/390 (57%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ER+ +L+ L H + E++NTIP+ +VL+QA +G L +KA+ EIE+ +PA+ Sbjct: 1 MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEGVPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ T A +LY+IVRKL DG + + + G + + G L +FPS Sbjct: 61 ITREGATTAPASVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 ++ Y F+L ++ L +L++RT FA++TEE RYYLNGIF H E D KL AVATDG Sbjct: 120 MGAGDFPYRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEPKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E D+ + A MP +IVPRK V E+ +++ V+++LSE+RI ++++ Sbjct: 180 HRLARVEADLPSGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP +N + LRV + AV RV+ +S R + VKL+L L ++ Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + G A E ++ + Y+ ++I F +YL +I D V+ EV F S S Sbjct: 300 ASSTEQGMAKEELDDNRISYDAEGLEIGFQARYLNDITDQ------VEKEVEFAFADSAS 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D S A YVLMPMR+ Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374 >gi|329847539|ref|ZP_08262567.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19] gi|328842602|gb|EGF92171.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19] Length = 373 Score = 264 bits (675), Expect = 1e-68, Method: Compositional matrix adjust. Identities = 143/387 (36%), Positives = 229/387 (59%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ER +L+ LGH ++ER+NTIP+ +VLL A G + A+ ++EI A+ Sbjct: 1 MQFTIERGALLKALGHVQNVVERRNTIPILSNVLLSAERGQVSFSATDLDMEIVDTAEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G IT AH LY+IVRKL DGA + + +S G S F L P +FP Sbjct: 61 VSVPGQITAPAHTLYEIVRKLPDGADVELKFSAGDDPRLAVSAGRSRFALPVLPAGDFPI 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + SF + LK L+++T FA++TEE RYYLNG++ H ED L AVATDG Sbjct: 121 MSSDHEGVSFSILRDDLKRLIDKTRFAVSTEETRYYLNGMYLHTLSEDGSNYLRAVATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE+ A P +I+PRK + + R+L V++++S ++I + + S++ Sbjct: 181 HRLALAEMPAPEGSAGGPGVIIPRKTIDQARRLLDDGTGYVELTISPAKIRFQLGNASLT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +NDK + ++ L +AVDRVS +S+ + ++VK+++ +L ++ Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKVMMIDTGILAKAVDRVSTISAEKSRSVKMAIEPGRLTLS 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + Y+ +DI FN +Y+L+++ I ++V E+ F D+S+ ++ Sbjct: 301 VRNIEAGQAVEEAEIDYDNDSIDIGFNARYILDVMGQIGGEQV---ELRF-ADASSPTLV 356 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + DN V YVLMP+R+ Sbjct: 357 L--------DPADNGVQ--YVLMPLRV 373 >gi|258542325|ref|YP_003187758.1| DNA polymerase III subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633403|dbj|BAH99378.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636462|dbj|BAI02431.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639515|dbj|BAI05477.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642571|dbj|BAI08526.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645626|dbj|BAI11574.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648679|dbj|BAI14620.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651732|dbj|BAI17666.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654723|dbj|BAI20650.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 374 Score = 263 bits (672), Expect = 3e-68, Method: Compositional matrix adjust. Identities = 148/390 (37%), Positives = 222/390 (56%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ER+ +L+ L H + E++NTIP+ +VL+QA +G L +KA+ EIE+ +PA Sbjct: 1 MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEEVPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ T A +LY+IVRKL DG + + + G + + G L +FPS Sbjct: 61 ITREGATTAPAAVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 ++ + F+L ++ L +L++RT FA++TEE RYYLNGIF H E D KL AVATDG Sbjct: 120 MGAGDFPHRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEAKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E D+ A A MP +IVPRK V E+ +++ V+++LSE+RI ++++ Sbjct: 180 HRLARVEADLPAGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP +N + LRV + AV RV+ +S R + VKL+L L ++ Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + G A E ++ + Y+ ++I F +YL +I D V+ EV F S S Sbjct: 300 ASSAEQGVAKEELDDNRISYDAEGLEIGFQARYLNDITDQ------VEKEVEFAFADSAS 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D S A YVLMPMR+ Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374 >gi|114798873|ref|YP_759292.1| DNA polymerase III subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739047|gb|ABI77172.1| DNA polymerase III, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 373 Score = 263 bits (671), Expect = 4e-68, Method: Compositional matrix adjust. Identities = 150/388 (38%), Positives = 228/388 (58%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER D+L+ L H I+ER+ TIP+ +VLL+A G L++ A+ +IE + A+ Sbjct: 1 MKLTIERGDLLDALSHVQNIVERRTTIPILSNVLLEATQGALKLTATDLDIEAVDSALAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T A L+D+VRKL GA++ + N + I+ G S F L + P ++F + Sbjct: 61 VSRPGSVTAPAGTLFDVVRKLPSGAEVEL-ELNPESQRLTIAAGRSLFELPTLPAADFQT 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED---LKLCAVATD 177 +E SF++A+ L+++T FA++TEE RYYLNGI+ H + D L VATD Sbjct: 120 MTPDEGAVSFKIAAKDFARLIDKTRFAISTEETRYYLNGIYLHAAKADDGSAVLRTVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA+AE+ K+ +IVPRK VGE R+L D V++ +S+++I L + Sbjct: 180 GHRLALAELKAPKGAEKLTGVIVPRKTVGEARRLLDGLDEDVEIEVSDTKIILRAGRAVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP NDK++ V+ AVDRVS +S+ R ++VKLS+S+ +L + Sbjct: 240 TSKLIDGSFPDYARVIPKGNDKKMTVDNKAFEAAVDRVSTVSAERSRSVKLSVSNGRLTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V++ + G E + Y PM+I FN KYLL+I I S EV E +F +S + V Sbjct: 300 AVNHAETGAGNEEIEAEYESEPMEIGFNAKYLLDIAGQIESSEV---EFMFNDPASPALV 356 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +A +V+MP+R+ Sbjct: 357 LDPSDD-----------SARFVVMPLRV 373 >gi|326387150|ref|ZP_08208760.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326208331|gb|EGD59138.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 356 Score = 263 bits (671), Expect = 5e-68, Method: Compositional matrix adjust. Identities = 147/372 (39%), Positives = 225/372 (60%), Gaps = 25/372 (6%) Query: 20 IIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDI 77 ++ER+NTIP+ +VL+ A G +++ A+ +++I ++PA SV+V G+ITVSAHLL+DI Sbjct: 4 VVERRNTIPILSNVLIDAAATGSVKLMATDLDLQIIESMPAVSVEVPGAITVSAHLLFDI 63 Query: 78 VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137 RKL DG+Q+S + + + G S F L + P +FP E + SFE+ + L Sbjct: 64 ARKLPDGSQVSLETADN---RMIVKAGRSRFQLPTLPRDDFPVIVEGDLPTSFEIPARTL 120 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 L++RT FA++TEE RYYLNGIFFH+++E LK A ATDGHRLA + MP Sbjct: 121 AELIDRTRFAISTEETRYYLNGIFFHVSDEVLK--AAATDGHRLARYTLPRPEGAEGMPD 178 Query: 198 IIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES---LSMSVRLIDGEFPNYQNVI 253 +I+PRK VGE+ ++L D++V V LS S++ + + ++ +LIDG FP+Y VI Sbjct: 179 VIIPRKCVGELRKLLEDVLDTNVLVDLSASKVRFTLGGEFGVVLTSKLIDGTFPDYSRVI 238 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313 P NDK LR++ + + VDRV+ +++ + +AVK++L +D++ ++V +PD G A E + Sbjct: 239 PTGNDKLLRLDPRSFFEGVDRVATIATEKTRAVKMALDTDRVTLSVTSPDNGTAAEELPA 298 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 Y +I FN YL +I+ I D V L +++ IR KD+K Sbjct: 299 DYQASGFEIGFNANYLKDILSQIDG-----DLVELHLADASAPTLIR---------KDDK 344 Query: 374 VNAFYVLMPMRI 385 A YVLMPMR+ Sbjct: 345 SPALYVLMPMRV 356 >gi|296446087|ref|ZP_06888036.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] gi|296256446|gb|EFH03524.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] Length = 371 Score = 262 bits (670), Expect = 6e-68, Method: Compositional matrix adjust. Identities = 145/388 (37%), Positives = 226/388 (58%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++R+ +L+ L RI E++ TIP+ H LL+ + G L I+A+ +IE + A Sbjct: 1 MKLTIDRAPLLKALETTRRIAEQRTTIPILSHALLETDHGRLCIRATDLDIETRILLDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VSA +L+D+ RKL + AQI+ E + ++ + G S F L + P FP Sbjct: 61 IAETGALAVSAAVLHDLTRKLPEKAQITL--EGQEAGQLQMRSGRSRFKLSTLPADTFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 T E + F L ++ L ++ +T FA++TEE RYYLNG+FFH E+D + L VATDG Sbjct: 119 TTEHGFSADFALPAATLARMLGKTAFAISTEETRYYLNGVFFHHMEDDGRALLRMVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ E + A A MP +IVPRKA EI R+L +++ ++++S +++ ++ +++S Sbjct: 179 HRLSRIETEAPAGAAAMPGVIVPRKACAEIERLLKGQEAEARLAVSANKLRFSLGDVTLS 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK ++ T + A DRVS + S R +AVKLS + L ++ Sbjct: 239 TKLIDGTFPDYARVIPQGNDKRATLDRTAMAAAADRVSTIHSERGRAVKLSFDASALTLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSSV 357 V NPDMG+A + M Y+ P++I FN +YL E + + D V RL D ++ Sbjct: 299 VTNPDMGEARDEMEADYDSSPIEIGFNSRYLAEALQVLEG-----DSAVIRLADPGAPTL 353 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F + + VLMPMR+ Sbjct: 354 F----------QSATQPDLLIVLMPMRV 371 >gi|114326983|ref|YP_744140.1| DNA polymerase III subunit beta [Granulibacter bethesdensis CGDNIH1] gi|114315157|gb|ABI61217.1| DNA polymerase III, beta chain [Granulibacter bethesdensis CGDNIH1] Length = 387 Score = 261 bits (666), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 149/400 (37%), Positives = 222/400 (55%), Gaps = 40/400 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ER+ +L+ L H ++E++NTIP+ +VLL+ DG L A+ EI I +PA Sbjct: 13 MKFKAERAVLLKALAHVQSVVEKRNTIPILANVLLEVKDGSLRFTATDMEIAIVEDVPAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112 G++T A LY+IVRKL DGA + E++ GD L+S Sbjct: 73 GLRDGAVTAPAGTLYEIVRKLPDGADV----------ELDHQAGDQQLMLKSGRYATKLV 122 Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE---ED 168 P +FPS + F LA +VL+ L++RT FA++TEE RYYLNGI+FH + + Sbjct: 123 VLPTDDFPSMTTGALPHQFRLAGNVLRGLIDRTRFAISTEETRYYLNGIYFHAAQGGPDG 182 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L AVATDGHRLA E + MP +IVPRK V E+ ++L +V V+LS++RI Sbjct: 183 AALRAVATDGHRLARVEEPLPEGALGMPGVIVPRKTVAELRKLLDEVTDTVDVALSDTRI 242 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++++ +LIDG FP Y+ VIP NDK LRV + AV RV+ +SS R + VK+ Sbjct: 243 QFVAGPVTLTSKLIDGTFPEYERVIPKDNDKVLRVGKNDFSAAVARVAAISSERSRPVKM 302 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 +L + L ++ +PD G A E ++ + Y ++I F +YL +I D I+ +E Sbjct: 303 ALDRNLLVLSASSPDQGTATEELDGDRIQYEAGALEIGFQARYLNDITDQIA------EE 356 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V FR ++ + +D+ ++ +A YVLMPMR+ Sbjct: 357 VEFRFADGSAPTVV----QDAADS-----SALYVLMPMRV 387 >gi|302381118|ref|YP_003816941.1| DNA polymerase III subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302191746|gb|ADK99317.1| DNA polymerase III, beta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 372 Score = 260 bits (665), Expect = 2e-67, Method: Compositional matrix adjust. Identities = 143/387 (36%), Positives = 220/387 (56%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS +L+ LGH ++ER+NTIP+ +VLL A L A+ ++EI A+ Sbjct: 1 MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEIVDEADAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G IT AH LY+IVRKL DGA+++ N + + G S F L P +FP Sbjct: 61 VQVEGQITAPAHTLYEIVRKLPDGAEVAL-TYNGDDPRLTVQAGRSKFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC-AVATDG 178 ++ F L L L+++T FA++TEE RYYLNG++ H + E + L AVATDG Sbjct: 120 MSTDQSGARFTLMKDDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEGGIPLLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE A P +IVPRK + ++ R+L V++S+S +I S++ Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTIDQVRRLLDDGTGPVEISVSPQKIRFEFGQASLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP NDK+ ++ AVDRV+ +S+ + ++VKL+ D++ +T Sbjct: 240 SKVIDGAFPDYMRVIPKGNDKQADIDNAVFASAVDRVATISAEKSRSVKLAFELDRVTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+ +E + + Y+E P +I FN +YLL++ I+ + +F +S + V Sbjct: 300 VRNMEAGQGVEEVEIGYSEAPFEIGFNARYLLDVAGQITGENAT---FLFADPASPTLVL 356 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D V YVLMP+R+ Sbjct: 357 DPG---------DPGVQ--YVLMPLRV 372 >gi|330994265|ref|ZP_08318193.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1] gi|329758732|gb|EGG75248.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1] Length = 380 Score = 259 bits (662), Expect = 4e-67, Method: Compositional matrix adjust. Identities = 150/399 (37%), Positives = 223/399 (55%), Gaps = 39/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R +L+ L H + E++NTIP+ +VL+ DG + + A+ EI + + A Sbjct: 7 MKLKADRVTLLKALAHIQSVAEKRNTIPILANVLINVVDGAMTLTATDMEIAVVEGVAAE 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS--FPES-- 116 G++T A +LY+IVRKL DGAQ+ E++ + GD+ L++ F S Sbjct: 67 TQRDGAVTAPAAVLYEIVRKLPDGAQV----------ELDHAGGDAPLGLRAGRFATSLN 116 Query: 117 -----EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK- 170 +FPS + F + + VL+ L++RT FA++TEE RYYLNGIF H+ E + Sbjct: 117 VLDVDDFPSMMAGALPHEFSMPAQVLRGLIDRTRFAISTEETRYYLNGIFLHVAEGETGP 176 Query: 171 -LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 L AVATDGHRLA E ++ A A MP +IVPRK V E+ ++L V V+LS++RI Sbjct: 177 VLRAVATDGHRLARVETELPAGSAGMPGVIVPRKTVAELRKLLDEGPEQVAVALSDTRIQ 236 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 +I +++++ +LIDG FP Y+ VIP NDK LRV AV RV+ +S R + VKLS Sbjct: 237 FSIGNITLTSKLIDGTFPEYERVIPHGNDKILRVGKKIFSDAVSRVAAISQERSRPVKLS 296 Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + + L ++ + D G A E ++ V Y P++I F +YL +I D V+ EV Sbjct: 297 MGHNLLTLSAASQDQGTATEELDENHVSYAASPIEIGFQARYLNDITDQ------VEREV 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F S++ +R D S A YVLMPMR+ Sbjct: 351 EFAFSDSSAPTIVRDVDSPS---------ALYVLMPMRV 380 >gi|297717814|gb|ADI50050.1| DNA polymerase III beta subunit [Candidatus Odyssella thessalonicensis L13] Length = 375 Score = 259 bits (662), Expect = 5e-67, Method: Compositional matrix adjust. Identities = 137/390 (35%), Positives = 231/390 (59%), Gaps = 20/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER D L+ L H ++E++ T+P+ HVL+QA D L + + ++ + +IPA Sbjct: 1 MKFAVERGDFLKALAHGGSVVEKRTTVPILSHVLIQAEDSQLHLTTTDMDLALVESIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GSITVSAH+L +IVRKL DG +I N+ ++ + G S F + + P +FP Sbjct: 61 VEAPGSITVSAHMLLEIVRKLPDGVKIE-ATLNQANDQLTLKAGKSRFNIATLPAEQFPK 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + +SF+L + L+ L++R+ FAM+TEE RY+LNGI+FH +E + + +VATD Sbjct: 120 LTQNDLPFSFKLTAEKLRYLIDRSRFAMSTEETRYFLNGIYFHAHEINGQKVFRSVATDA 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLNIESLS 236 HRLA EV + +P IIV RK + EI ++++ + ++ + +SLS R+ + + Sbjct: 180 HRLACIEVPVPEGAESIPGIIVGRKTITEIRKLINDENPEAEITISLSPQRVEFKLPQAT 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +S RL+DG +P+Y+ IP NDK + V+ + +AVDRV+ +++ ++ +K+S++ +KL Sbjct: 240 LSSRLVDGTYPDYEQAIPKGNDKPVIVDAKDFAKAVDRVATVTTDKLPVIKISVAKNKLT 299 Query: 297 MTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + ++G A E M V + + ++I FN YL++I I D+ L ++ Sbjct: 300 LVAASSELGDATEEMEVDFPFDHSIEIGFNANYLVDITSQIG-----DEAAEILLSDGSA 354 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+G N+K+ A +VLMPMR+ Sbjct: 355 PAIIKG-----INDKE----ALFVLMPMRV 375 >gi|254417831|ref|ZP_05031555.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3] gi|196184008|gb|EDX78984.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3] Length = 372 Score = 257 bits (656), Expect = 3e-66, Method: Compositional matrix adjust. Identities = 141/387 (36%), Positives = 223/387 (57%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS +L+ LGH ++ER+NTIP+ +VLL A L A+ ++E+ A+ Sbjct: 1 MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLAFAATDLDMEMVDEAEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+V G IT AH LY+IVRKL +GA++S + + +S G S F L P +FP Sbjct: 61 VNVEGQITAPAHTLYEIVRKLPEGAEVSLLYSGD-DPRLVVSAGRSRFNLPVLPAGDFPI 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC-AVATDG 178 + S+ + L L+++T FA++TEE RYYLNG++ H + E + L AVATDG Sbjct: 120 MSTDSAGASYVMPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEAGVALLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE A P +IVPRK V ++ R+L V++++S +I I S++ Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDAAGPVEITVSAQKIRFQIGEASLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP NDK+ ++ +AVDRV+ +S+ + ++VKL+ +D++ +T Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNALFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A E + + Y++ P +I FN +YLL++ I+ + FR S Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ENAAFRFADPASPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D V YVLMP+R+ Sbjct: 355 V-------LDPGDPGVQ--YVLMPLRV 372 >gi|315497053|ref|YP_004085857.1| DNA polymerase iii, beta subunit [Asticcacaulis excentricus CB 48] gi|315415065|gb|ADU11706.1| DNA polymerase III, beta subunit [Asticcacaulis excentricus CB 48] Length = 373 Score = 255 bits (652), Expect = 7e-66, Method: Compositional matrix adjust. Identities = 137/387 (35%), Positives = 223/387 (57%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ER +L+ LGH ++ER+NTIP+ +VLL A + A+ ++EI + A Sbjct: 1 MQLIIERGALLKALGHVQNVVERRNTIPILSNVLLSAEGSQVSFSATDLDMEIVDSAEAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G IT AH LY+IVRKL DGA + + + + G S F L P +FP Sbjct: 61 VAVPGQITAPAHTLYEIVRKLPDGADVELRYQAGDDPRLTVQAGRSRFALPVLPAGDFPV 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + ++ L LK L+++T FA++TEE RYYLNG+F H ED L AVATDG Sbjct: 121 MSGDHDGTTYALLKEDLKRLIDKTRFAVSTEETRYYLNGLFLHTLTEDGSGYLRAVATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE+ +I+PRK + + R+L V++++S ++I N + +++ Sbjct: 181 HRLALAEMPAPDGSMGSAGVIIPRKTIDQARRLLDDGTGYVELTVSPAKIRFNFGTAALT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +NDK +R++ L +AVDRVS +S+ + ++VK+++ +L +T Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKLMRIDTGILSRAVDRVSTISAEKSRSVKMAIEPGRLTLT 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + Y+ ++I FN +Y+L+++ I+ ++V RL+ + S Sbjct: 301 VRNIEAGQAVEEAEIDYDSDSLEIGFNARYILDVMGQIAG-----EQVELRLNDAASPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D V YVLMP+R+ Sbjct: 356 V-------LDTADQGVQ--YVLMPLRV 373 >gi|162147556|ref|YP_001602017.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542190|ref|YP_002274419.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161786133|emb|CAP55715.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209529867|gb|ACI49804.1| DNA polymerase III, beta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 374 Score = 254 bits (650), Expect = 1e-65, Method: Compositional matrix adjust. Identities = 145/399 (36%), Positives = 218/399 (54%), Gaps = 39/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H + E++NTIP+ +VL+ DG L + A+ EI + I A Sbjct: 1 MKLKADRATLLKALAHIQSVAEKRNTIPILANVLINVADGRLTLTATDMEIAVVEEIGAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112 G++T A +LY+I RKL DG I E++ + GD+ L++ Sbjct: 61 TSRNGAVTAPAAVLYEIARKLPDGVAI----------ELDHTGGDAPLALRAGRYATSLN 110 Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDL 169 +FPS Y F + ++VL+ L++RT FA++TEE RYYLNGI+ H+ +E Sbjct: 111 VLDVDDFPSMMAGTLPYHFTMPAAVLRGLIDRTRFAISTEETRYYLNGIYLHVAAGDEGS 170 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 L AVATDGHRLA E ++ +MP +IVPRK V E+ ++L V V LS++RI Sbjct: 171 MLRAVATDGHRLARVETEVPPGAEEMPGVIVPRKTVAELRKLLDEGTEDVAVGLSDTRIQ 230 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + +++++ +LIDG FP Y VIP NDK LRV + AV RV+ +S R + VKLS Sbjct: 231 FTVGTVTLTSKLIDGTFPEYDRVIPRGNDKILRVGKRDFSDAVARVAAISQERSRPVKLS 290 Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + + L ++ +PD G A E ++ V Y+ P++I F +YL +I D I D +V Sbjct: 291 IGHNLLTLSAVSPDQGTAKEELDDNYVTYDSTPLEIGFQARYLNDITDQI------DKDV 344 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F S++ +R S A YVLMPMR+ Sbjct: 345 EFAFSDSSAPTIVRDVASPS---------ALYVLMPMRV 374 >gi|148260438|ref|YP_001234565.1| DNA polymerase III subunit beta [Acidiphilium cryptum JF-5] gi|146402119|gb|ABQ30646.1| DNA polymerase III, beta subunit [Acidiphilium cryptum JF-5] Length = 374 Score = 253 bits (646), Expect = 4e-65, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 216/399 (54%), Gaps = 39/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H ++E++NTIP+ +VLL +G L I A+ EI + + A+ Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112 GS+T A LY+IVR+ D A+I E++ GD+ L++ Sbjct: 61 TMRDGSVTAPAATLYEIVRRQPDNAEI----------ELDHPGGDAPLALRAGRYATKLV 110 Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--L 169 P EFP + + F + + L+ L++RT FA++TEE RYYLNGI+ H E + Sbjct: 111 VLPTDEFPKLDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVP 170 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 L AVATDGHRLA E + A MP +IVPRK V EI ++L V ++LSE+RI Sbjct: 171 VLRAVATDGHRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQ 230 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 ++++ M+ +LIDG +P+Y VIP NDK LRV + AV RVS ++S R + VKLS Sbjct: 231 FELDTMRMTSKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLS 290 Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + D L ++ +PD G A E ++ V Y P++I F +YL ++ + I +V Sbjct: 291 VGRDLLVLSATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KV 344 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F + +R +S A +VLMPMR+ Sbjct: 345 EFCFADGAAPTLVRAAGDES---------AIFVLMPMRV 374 >gi|326403632|ref|YP_004283714.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301] gi|325050494|dbj|BAJ80832.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301] Length = 374 Score = 252 bits (644), Expect = 6e-65, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 216/399 (54%), Gaps = 39/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H ++E++NTIP+ +VLL +G L I A+ EI + + A+ Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112 GS+T A LY+IVR+ D A+I E++ GD+ L++ Sbjct: 61 TMRDGSVTAPAATLYEIVRRQPDNAEI----------ELDHPGGDAPLALRAGRYATKLV 110 Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--L 169 P EFP + + F + + L+ L++RT FA++TEE RYYLNGI+ H E + Sbjct: 111 VLPTDEFPKLDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHSAESEGVP 170 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 L AVATDGHRLA E + A MP +IVPRK V EI ++L V ++LSE+RI Sbjct: 171 VLRAVATDGHRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQ 230 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 ++++ M+ +LIDG +P+Y VIP NDK LRV + AV RVS ++S R + VKLS Sbjct: 231 FELDTMRMTSKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLS 290 Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + D L ++ +PD G A E ++ V Y P++I F +YL ++ + I +V Sbjct: 291 VGRDLLVLSATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KV 344 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F + +R +S A +VLMPMR+ Sbjct: 345 EFCFADGAAPTLVRAAGDES---------AIFVLMPMRV 374 >gi|329891033|ref|ZP_08269376.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC 11568] gi|328846334|gb|EGF95898.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC 11568] Length = 372 Score = 252 bits (643), Expect = 8e-65, Method: Compositional matrix adjust. Identities = 140/388 (36%), Positives = 222/388 (57%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS +L LGH ++ER+NTIP+ +VLL A L A+ ++E+ A Sbjct: 1 MQLTIERSALLRALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEMVDEAEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+V G IT AH LY+IVRKL DGA++S + + ++ G S F L P +FP Sbjct: 61 VNVEGQITAPAHTLYEIVRKLPDGAEVSLTYSGD-DPRLVVAAGRSRFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC-AVATDG 178 E + L L L+++T FA++TEE RYYLNG++ H + + + L AVATDG Sbjct: 120 MSTEASGARYTLPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVADGGIPLLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE A P +IVPRK V ++ R+L V+V +S +I S++ Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDGAGPVEVQVSAQKIRFEFGEASLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP NDK+ ++ + +AVDRV+ +S+ + ++VKL+ +D++ +T Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNSLFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSSV 357 V N + G+A E + + Y++ P +I FN +YLL++ I+ + F+ D ++ ++ Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ETAHFKFADPASPTL 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D V YVLMP+R+ Sbjct: 355 VLDPAD----------VGVQYVLMPLRV 372 >gi|58038493|ref|YP_190457.1| DNA polymerase III subunit beta [Gluconobacter oxydans 621H] gi|58000907|gb|AAW59801.1| DNA polymerase III, beta chain [Gluconobacter oxydans 621H] Length = 374 Score = 249 bits (635), Expect = 7e-64, Method: Compositional matrix adjust. Identities = 140/390 (35%), Positives = 217/390 (55%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R+ + L H + E++NTIP+ +VL+ D +L + A+ EI + +PAS Sbjct: 1 MKFKVDRTLLQRALAHIHGVAEKRNTIPILANVLMSYQDDVLRLTATDMEIAVVEDVPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV A +L++IVRKL DG + F ++ + + G L P +FP+ Sbjct: 61 GERSGSTTVPAAVLFEIVRKLPDGVALEFDHQDS-EAPLALRAGRYATSLNVLPVDDFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + + F + ++ L+ L++RT FA++ EE RYYLNGI+ H+ E L AVATDG Sbjct: 120 MVAGDLPHRFSIPAATLRGLIDRTKFAISNEETRYYLNGIYLHVAENGSIPMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E ++ MP +I+PRK + E+ ++L + ++VSLS++RI + ++ Sbjct: 180 HRLARVETELPEGARGMPGVIIPRKTINELRKLLDEGAADLEVSLSDTRIQFQAGPVLLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP ND+ LRV + AV RV+ +S R + VKLS++ + L ++ Sbjct: 240 SKLIDGTFPEYERVIPKGNDRILRVGKRDFAAAVGRVAAISQERSRPVKLSVTQNMLNLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +PD G A E ++ V Y+ P++I F +YL +I D I D EV F S++ Sbjct: 300 ATSPDQGVAHEELDENAVSYDAAPIEIGFQARYLTDITDQI------DVEVEFAFSDSSA 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R S A YVLMPMR+ Sbjct: 354 PTIVRDTASPS---------ALYVLMPMRV 374 >gi|197106929|ref|YP_002132306.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1] gi|196480349|gb|ACG79877.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1] Length = 372 Score = 248 bits (634), Expect = 8e-64, Method: Compositional matrix adjust. Identities = 136/387 (35%), Positives = 216/387 (55%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L LGH +ER+NTIP+ +VLL A L A+ ++EI A Sbjct: 1 MKLTIERAALLRALGHVQSAVERRNTIPILSNVLLSAERDRLTFSATDLDMEIIDEAMAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G IT AH LY+IVRKL +GA +S E + + G S F L P +FP Sbjct: 61 VDQPGQITAPAHTLYEIVRKLPEGADVSLSFTGE-DPRLAVQAGRSRFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E + + + L L+++T FA++ EE RYYLNG++ H + + +L AVATDG Sbjct: 120 MSAEGFSGRMGVDVTDLIRLIDKTRFAISAEETRYYLNGLYLHTIVVDGSPRLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+A++ A P +IVPRK VGE R+L V++ +S +I + +++ Sbjct: 180 SRLALADMPAPEGAAGAPGVIVPRKTVGEARRLLEDAGEQVELQVSPQKIRFEFDGAALT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N++ + V+ QAVDRV+ +S+ + ++V++++ + K+ +T Sbjct: 240 SKVIDGNFPDYARVIPKDNNRIVMVDAKLFAQAVDRVATISAEKSRSVRMAIEAGKVVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + + Y+ P ++ FN +YLL+I D IS ++ R N Sbjct: 300 VRNMEAGQAVEELEIDYDGEPFELSFNARYLLDITDQISG-----EQAELRFGGPNDPAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D V Y+LMP+R+ Sbjct: 355 V-------LDPADADVQ--YILMPLRV 372 >gi|16124411|ref|NP_418975.1| DNA polymerase III subunit beta [Caulobacter crescentus CB15] gi|221233094|ref|YP_002515530.1| DNA polymerase III subunit beta [Caulobacter crescentus NA1000] gi|239977224|sp|B8GXP6|DPO3B_CAUCN RecName: Full=DNA polymerase III subunit beta gi|239977225|sp|P0CAU5|DPO3B_CAUCR RecName: Full=DNA polymerase III subunit beta gi|1049324|gb|AAB51448.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15] gi|13421269|gb|AAK22143.1| DNA polymerase III, beta subunit [Caulobacter crescentus CB15] gi|220962266|gb|ACL93622.1| DNA polymerase III, beta chain [Caulobacter crescentus NA1000] Length = 372 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 140/389 (35%), Positives = 225/389 (57%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ ++LL A L A+ ++EI A Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 +DV G IT AH LY+IVRKL DGA +S F ++ + I G S F L P +FP Sbjct: 61 IDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDD--PRLVIQAGRSRFNLPVLPAGDFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEE-DLKLCAVATD 177 + + ++ L L+++T FA++TEE RYYLNG++ H +NE + KL AVATD Sbjct: 119 VMSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA+AE+ +P +IVPRK + E R++ S +V + +S ++ + ++ Sbjct: 179 GHRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAAL 238 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N K L ++ +AVDRV+ +S+ + ++VKL++ ++ + Sbjct: 239 TSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITL 298 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356 TV N + G+A+E + V Y+ P +I FN +YLL++ I+ + FR D ++ + Sbjct: 299 TVRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAG-----PQAEFRFADPASPT 353 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D K YVLMP+R+ Sbjct: 354 LVVDPVDPGVK----------YVLMPLRV 372 >gi|254490238|ref|ZP_05103428.1| DNA polymerase III, beta subunit [Methylophaga thiooxidans DMS010] gi|224464585|gb|EEF80844.1| DNA polymerase III, beta subunit [Methylophaga thiooxydans DMS010] Length = 367 Score = 248 bits (633), Expect = 1e-63, Method: Compositional matrix adjust. Identities = 137/385 (35%), Positives = 224/385 (58%), Gaps = 18/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV + I+ L C I+ER+ T+P+ +VLL+ + L + ++ E+E+ +P S Sbjct: 1 MQFTVSQETIVRPLQLVCSIVERRATLPILSNVLLRVHGNQLSMTSTDMELEMIATLPVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G ITVSA DIVR L A IS N + + G S F L + P +FP Sbjct: 61 VEEEGKITVSARKFLDIVRALPGNATISL---NAKDNKAVVKAGKSRFSLSTLPSDDFPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ Y+ L S LK+L++ T FAMA++++RYYLNG+ E+ L AVATDGHR Sbjct: 118 SEGANYIDEISLPQSALKSLLDETSFAMASQDVRYYLNGLLLE--REETTLRAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + +A+ S+IVPRKA+ E+ R+L+ D VK++ S +I + + + + + Sbjct: 176 LAMGSLTTANPVAEKNSVIVPRKAIIELGRLLNETDDDVKLAFSNQQIKVELPDIHFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ V+P DKE+ L+QA+ R +I+S+ + ++V+++L +D+L TV Sbjct: 236 LIDGQFPNYERVLPLGGDKEVLAERDELKQALSRAAILSNDKHRSVRINLDTDQLKATVT 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + A E ++V Y P++I FN YLL++++ I ++V +++F ++S++ V Sbjct: 296 NQEQESAEEEISVDYKGSPLEIAFNNAYLLDLLNAIPDEKV---KILFTDETSSALV--- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D K YV+MPMR+ Sbjct: 350 -------TPADQKFERQYVVMPMRL 367 >gi|296115230|ref|ZP_06833871.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295978331|gb|EFG85068.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 374 Score = 248 bits (632), Expect = 2e-63, Method: Compositional matrix adjust. Identities = 143/399 (35%), Positives = 222/399 (55%), Gaps = 39/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H + E++NTIP+ +VL+ DGL+ + A+ EI + I A Sbjct: 1 MKLKADRATLLKALLHIQGVAEKRNTIPILANVLINVTDGLMTMTATDMEIAVVEGISAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS--FPES-- 116 G++T A +L DIVR+L DGA + E++ + GD+ L++ F S Sbjct: 61 TLRDGAVTAPAAVLCDIVRRLPDGAVV----------ELDQAGGDAPLALRAGRFSTSLN 110 Query: 117 -----EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDL 169 +FPS + F +AS L+ L++R+ FA++TEE RYYLNGI+FH+ E + Sbjct: 111 VLDVDDFPSMMAGALPHDFTIASQALRGLIDRSRFAISTEETRYYLNGIYFHVAETPQGP 170 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 L AVATDGHRLA E D+ A MP +I+PRK V E+ ++L + ++LS++RI Sbjct: 171 MLRAVATDGHRLARVETDLPDGAAGMPGVIIPRKTVNELRKLLEEGPEHIGIALSDTRIQ 230 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + ++ ++ +LIDG FP Y+ VIP NDK L V AV RV+ +S R + VKL+ Sbjct: 231 FTVGNVILTSKLIDGTFPEYERVIPTGNDKVLHVGKKIFSDAVSRVAAISQERSRPVKLA 290 Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ + L ++ + D G A E ++ V Y+ P++I F +YL +I D I + V Sbjct: 291 VTQNLLTLSAASQDQGTATEELDDTHVVYDASPIEIGFQARYLNDITDQIEKN------V 344 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F S++ +R D+ S A YVLMPMR+ Sbjct: 345 EFAFSDSSAPTIVRDVDRPS---------ALYVLMPMRV 374 >gi|167644134|ref|YP_001681797.1| DNA polymerase III subunit beta [Caulobacter sp. K31] gi|167346564|gb|ABZ69299.1| DNA polymerase III, beta subunit [Caulobacter sp. K31] Length = 372 Score = 241 bits (616), Expect = 1e-61, Method: Compositional matrix adjust. Identities = 137/389 (35%), Positives = 223/389 (57%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ ++LL A+ L A+ ++EI A Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSADRDTLSFSATDLDMEIIDEGLAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 +D+ G IT AH LY+IVRKL DG+ +S F ++ + I G S F L P +FP Sbjct: 61 IDIPGQITAPAHTLYEIVRKLPDGSDVSLSFSGDD--PRLVIQAGRSRFNLPVLPAGDFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATD 177 + + ++ L L+++T FA++TEE RYYLNG++ H + ++KL AVATD Sbjct: 119 VMSSDGLSGRISVDTNELIRLIDKTRFAISTEETRYYLNGLYLHTVNDGGEVKLRAVATD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA+AE+ A +P IIVPRK + E R++ S V + +S ++ ++ Sbjct: 179 GHRLALAEMAAPEGAAGLPGIIVPRKTIQEARRLMESAGEQVDLQISAQKVRFEFGRAAL 238 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N K L ++ +AVDRV+ +S+ + ++VKL++ ++ + Sbjct: 239 TSKVIDGAFPDYLRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITL 298 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356 TV N + G+A+E + V Y+ +I FN +YLL++ I + + FR D ++ + Sbjct: 299 TVRNMEAGQAVEEVEVDYDGEAFEIGFNARYLLDVCGQIGG-PIAE----FRFADPASPT 353 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D K YVLMP+R+ Sbjct: 354 LVVDPTDPGVK----------YVLMPLRV 372 >gi|306843604|ref|ZP_07476205.1| DNA polymerase III, beta subunit [Brucella sp. BO1] gi|306276295|gb|EFM57995.1| DNA polymerase III, beta subunit [Brucella sp. BO1] Length = 275 Score = 241 bits (614), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 180/289 (62%), Gaps = 16/289 (5%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 +++ G S+F LQ P+S+FP + +SF + + LK L++RT FA++TEE RYYLN Sbjct: 1 MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLN 60 Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 GIFFH E D LKL AVATDGHRLA AE++ + MP II+PRK V E+ +++ D Sbjct: 61 GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 V V LS+++I + S+ ++ +LIDG FP+YQ VIP NDK+L ++ + +VDRVS Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVS 180 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 +SS R +AVKLS++ +L +TV+NPD G A + + Y+ P+DI FN KYLL+I + Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQL 240 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + VF L + S +R + D V YVLMPMR+ Sbjct: 241 SG-----TDAVFMLADAGSPTLVR-------DTGDEDV--LYVLMPMRV 275 >gi|56459114|ref|YP_154395.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR] gi|56178124|gb|AAV80846.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR] Length = 367 Score = 240 bits (613), Expect = 2e-61, Method: Compositional matrix adjust. Identities = 137/386 (35%), Positives = 220/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK ++ R L+ L +ER++T+P+ ++LLQ ++G L++ + E+E+ A+P Sbjct: 1 MKFSINRDAFLKPLQVVSGAVERRHTLPILSNLLLQVDNGQLKLTGTDLEVELVSAVPLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D+ ++TV A L DIVR L +G+ I F + + T + G S F L + +FP Sbjct: 61 SADMDAAVTVPAKKLLDIVRSLPEGSTIEFTSQEDSAT---VKSGRSKFKLSTLSSDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +VLK+L+ +THF+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIDDWKSDIHLVTEQAVLKDLMLKTHFSMANQDVRYYLNGMLFETDNGMLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I +IVPRK V E+LR+L D V VS+ + I + L + Sbjct: 176 RLAMSTCAIDQPGLAQRQVIVPRKGVVELLRLLGDDDQEVSVSIGNNHIRVETPELVFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + LRQ+ R SI+S+ + + V+L+LSS +LC+T Sbjct: 236 KLVDGRFPDYRRVLPSGGDKVIVAHRDALRQSFGRASILSNEKFRGVRLNLSSGELCITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A E + V Y ++I FN YLL++++NI D++V F L SNSS I Sbjct: 296 TNPEQEQAEEVIEVDYQGDDLEIGFNVSYLLDVLNNID-----DEQVSFTLSDSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S YV+MPMR+ Sbjct: 351 EPQHDES---------CCYVIMPMRL 367 >gi|306842703|ref|ZP_07475346.1| DNA polymerase III, beta subunit [Brucella sp. BO2] gi|306287149|gb|EFM58651.1| DNA polymerase III, beta subunit [Brucella sp. BO2] Length = 275 Score = 240 bits (612), Expect = 3e-61, Method: Compositional matrix adjust. Identities = 126/289 (43%), Positives = 179/289 (61%), Gaps = 16/289 (5%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 +++ G S+F LQ P+S+FP + +SF + + LK L++RT FA++TEE RYYLN Sbjct: 1 MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLN 60 Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 GIFFH E D LKL AVATDGHRLA AE++ + MP II+PRK V E+ +++ D Sbjct: 61 GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 V V LS+++I + S+ ++ +LIDG FP+YQ VIP NDK+L ++ +VDRVS Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQGFAASVDRVS 180 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 +SS R +AVKLS++ +L +TV+NPD G A + + Y+ P+DI FN KYLL+I + Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITSQL 240 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + VF L + S +R + D V YVLMPMR+ Sbjct: 241 SG-----TDAVFMLADAGSPTLVR-------DTGDEDV--LYVLMPMRV 275 >gi|284007064|emb|CBA72339.1| DNA polymerase III subunit beta [Arsenophonus nasoniae] Length = 366 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK T+ER +L+ L + + T+P+ ++LLQ ++ +L + + E+E+ + Sbjct: 1 MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSENILSLTGTDLEVEMVAKVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITV A +DI R L DGA+I E G + + G S F L + P ++FP Sbjct: 61 QPGESGSITVPARKFFDIWRGLPDGAEIKVTLE---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + LK L+E T F+MA +++RYYLNG+ F ++L+ VATDGH Sbjct: 118 NLDDWQSEVEFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGQELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++I + S+IVPRK V E +R+L S D S+K+ + + I ++ + Sbjct: 176 RLAVCSLNIDKDLPTH-SVIVPRKGVVEFMRLLDSSDESLKLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLTADCDKLKQAFSRAAILSNEKFRGVRLYISENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ ++ E ++V Y ++I FN Y+L++++ + ++V L SNSSV I Sbjct: 295 NNPEQEESEEIVDVNYQSPMIEIGFNVSYILDVLNTLKC-----EQVNLLLTDSNSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ N A YV+MPMR+ Sbjct: 350 ----EDAATNA-----AAYVVMPMRL 366 >gi|88860615|ref|ZP_01135252.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2] gi|88817210|gb|EAR27028.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2] Length = 368 Score = 233 bits (594), Expect = 4e-59, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 224/386 (58%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL+ DG L + + EIE+ + S Sbjct: 2 MQITIPRDQFLKPLIQVSGAIERKHTLPILSNVLLEIADGKLMMTGTDLEIELVACVTLS 61 Query: 61 VDVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V S +T+ A L DI + L DG++I+ ++ ++V ++ G S F L S P +FP Sbjct: 62 HFVEDSKLTLPAKKLLDICKSLPDGSEITLSAQD---SQVLLTSGKSRFSLASLPALDFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F++ + L+ L+E THF+MA +++RYYLNG+ F ++ ++K VATDGH Sbjct: 119 NLEQWDGEVDFQITRNELRKLLESTHFSMANQDVRYYLNGMSFEVDNSEIK--TVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+++ + + +I+PRK V EI+R++ S D+ V + + + + + + Sbjct: 177 RLALSQKKLDYSLNTQRQLIIPRKGVQEIMRLMVSDDNLVTIQFGANHFRIIDQEFTFTS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+ S+ +L +T Sbjct: 237 KLVDGRFPDYRRVLPRGGDKVVTANREWLRSAFSRVSILSNEKFRGVRLNFSAGELKITA 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y+ ++I FN Y+L++++ + + ++V F L SNSS + Sbjct: 297 NNPEQEQAEEIVEVVYSGPDLEIGFNVSYVLDVLNTLKT-----EDVSFTLSDSNSSALV 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D A YV+MPMR+ Sbjct: 352 EGTGDD---------EAMYVVMPMRL 368 >gi|85711020|ref|ZP_01042081.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145] gi|85695424|gb|EAQ33361.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145] Length = 367 Score = 233 bits (593), Expect = 5e-59, Method: Compositional matrix adjust. Identities = 136/386 (35%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TV R L+ L +ER++T+P+ ++LL+ L + + E+E+ ++ Sbjct: 1 MKFTVSRDAFLKPLQIVSGAVERRHTLPILSNLLLKVEGDTLRLTGTDLEVELISSVKVE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S G +TV A L DIVR L D + I ++E V + G S F L S +FP Sbjct: 61 SSGGDGMVTVPAKKLLDIVRSLPDESPIELVGDDE---GVRVRSGRSKFKLSSLSADDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ +F + LK L+E+THF+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIEDWSSEVNFITSQDTLKRLMEKTHFSMANQDVRYYLNGMLFETDANMLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I +IVPRK V E+LR+L+ DS V V++ + I + + + Sbjct: 176 RLAMSNCHIEQPGLSQRQVIVPRKGVVELLRLLNEDDSEVAVAIGNNHIRVETADIVFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK++ + LRQA R SI+S+ + + V+L++++ +LC+T Sbjct: 236 KLVDGRFPDYRRVVPQGGDKQIFADRDLLRQAFGRASILSNEKFRGVRLNITAGELCITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A E + V Y ++I FN YLL++++NI + +EV F L +NSS I Sbjct: 296 TNPEQEQAEEVIEVNYEGEAIEIGFNVSYLLDVLNNIEA-----EEVCFVLSDANSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 KD DS YV+MPMR+ Sbjct: 351 EPKDDDS---------CCYVVMPMRL 367 >gi|194363780|ref|YP_002026390.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia R551-3] gi|194346584|gb|ACF49707.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia R551-3] Length = 366 Score = 232 bits (592), Expect = 6e-59, Method: Compositional matrix adjust. Identities = 126/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV + L+Q +G L + + E+E+ I Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L++I+R L DG++I+ ++ G ++ + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFEIIRALPDGSRITV---SQTGDKITVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E D+ IIVPRK V E+ R+L S D +++ + S + + + ++ + + Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++VN +LR ++ R +I+S+ + + +++ +S L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVNRESLRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+EV+ +L SNSS +R Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +S + K +V+MP+R+ Sbjct: 351 ----ESSSEKSR-----HVVMPLRL 366 >gi|190572093|ref|YP_001969938.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia K279a] gi|254521676|ref|ZP_05133731.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14] gi|190010015|emb|CAQ43620.1| putative DNA polymerase III beta subunit [Stenotrophomonas maltophilia K279a] gi|219719267|gb|EED37792.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14] Length = 366 Score = 230 bits (586), Expect = 3e-58, Method: Compositional matrix adjust. Identities = 125/385 (32%), Positives = 216/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV + L+Q +G L + + E+E+ I Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L++I+R L DG++I+ ++ G ++ + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFEIIRALPDGSRITV---SQTGDKITVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E D+ IIVPRK V E+ R+L S D +++ + S + + + ++ + + Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + +++ +S L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+EV+ +L SNSS +R Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +S + K +V+MP+R+ Sbjct: 351 ----ESSSEKSR-----HVVMPLRL 366 >gi|120552946|ref|YP_957297.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8] gi|120322795|gb|ABM17110.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8] Length = 367 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 218/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R ++ L ++E+K T+PV +VLL+A D L + + E+E+ + P Sbjct: 1 MKLTISRESLITPLQSIAGVVEKKQTMPVLSNVLLEAEDNTLTLTGTNMEVELVARVAPV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G ITV A L DI R L D A I E G +++ G+S+F L + P FP Sbjct: 61 HVDQPGRITVPARKLADICRALGDEAPIDLALE---GDRLHLRSGNSHFTLSTLPAEHFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++E + L L +++ T FAMA +++RYYLNG+ ++ ++ VATDGH Sbjct: 118 NVEDEPESFRLALPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDVNHARV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A++D+ ++ +IVPRK V E+ R+L ++S V + + ++ + + S + + Sbjct: 176 RLAMAQLDLDTGCPELRQVIVPRKGVLELARLLDDEESPVTLVIGDNHLRATVGSYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y VIP DK + + + L+ + R I+S I+ V+L+LS ++L + Sbjct: 236 KLIEGKFPDYNRVIPRGGDKTVLADRSTLKSTLQRAGILSHENIRGVRLNLSPNQLQVFA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +++ V Y + I FN YL+++++ + DD+V L + NSS I Sbjct: 296 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----DDQVKITLSNPNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ DN+ YV+MPMR+ Sbjct: 351 EAQN-------DNR--CLYVVMPMRL 367 >gi|37524034|ref|NP_927378.1| DNA polymerase III subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783457|emb|CAE12297.1| DNA polymerase III, beta chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 366 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 135/387 (34%), Positives = 220/387 (56%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMMARVTLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 + G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+F Sbjct: 61 LPHEVGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDG Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 175 HRLAVCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L + SSV Sbjct: 294 ANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQ 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D N+ NA YV+MPMR+ Sbjct: 349 I----EDCANH-----NAAYVVMPMRL 366 >gi|319785622|ref|YP_004145097.1| DNA polymerase III subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317464134|gb|ADV25866.1| DNA polymerase III, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 366 Score = 229 bits (585), Expect = 4e-58, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 216/387 (55%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R +L+ L ++ER+ T+PV + L+Q DG L + + E+E+ Sbjct: 1 MRFTLQREALLKPLAQVVNVVERRQTLPVLANFLVQVQDGQLSLTGTDLEVEMIARAAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G IT+ A L++IVR L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAVDGEITIPARKLFEIVRALPDGSRVTI---SLAGDKVTVQAGRSRFSLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + ++ L+ C VATDGHR Sbjct: 118 VDEVEATERITVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDQSLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E + + IIVPRK V E+ R+L D S+++ + S I + + +S + + Sbjct: 176 LALCEAPLEQPVGTKRQIIVPRKGVTELQRLLEGGDRSLELEVGRSHIRVKRDDVSFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP +KE+RV+ +R A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGRFPDYEAVIPIGAEKEVRVDREVIRAALQRAAILSNEKYRGVRVEISPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ +V L +NSS +R Sbjct: 296 NPEQEEAQEEIEAETKVDGLAIGFNVNYLLDALGALR-----DEHIVIALRDANSSALVR 350 Query: 361 --GKDKDSKNNKDNKVNAFYVLMPMRI 385 G DK +V+MP+R+ Sbjct: 351 EAGSDK-----------CRHVVMPLRL 366 >gi|320539855|ref|ZP_08039514.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson] gi|320030041|gb|EFW12061.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson] Length = 366 Score = 227 bits (579), Expect = 2e-57, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQA +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQAMEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ ENE + + G S F L + P ++FP Sbjct: 61 QTHEAGATTVPARKFFDICRGLPEGAEIAVTLENE---RILVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ +ATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E+LR+L S D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPIGQQLPSH-SVIVPRKGVMELLRLLDSGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKILEAGCDLLKQAFARAAILSNEKFRGVRLYASHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + S+ V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKSENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDGVSQ-------AAAYVVMPMRL 366 >gi|156972778|ref|YP_001443685.1| DNA polymerase III subunit beta [Vibrio harveyi ATCC BAA-1116] gi|156524372|gb|ABU69458.1| hypothetical protein VIBHAR_00443 [Vibrio harveyi ATCC BAA-1116] Length = 366 Score = 226 bits (577), Expect = 3e-57, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L S L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + D V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|254447344|ref|ZP_05060810.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015] gi|198262687|gb|EDY86966.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015] Length = 366 Score = 226 bits (577), Expect = 4e-57, Method: Compositional matrix adjust. Identities = 131/385 (34%), Positives = 218/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R +L L +ERKNT+P +VL++A G +++ A+ EIE+ Sbjct: 1 MKLHLSRESLLTPLQKVIGAVERKNTMPALGNVLIKAQGGEIQMTATDLEIELLAKSVLP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G IT+ A L DI + L DGA I+ + E T +S G S F L + P ++FP Sbjct: 61 VDQEGDITLPARKLLDICKNLPDGADITLQVDAERAT---LSSGRSRFKLSTLPAADFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V F L S L+ ++++T FAMA +++RYYLNG+ ++ ++ AVATDGHR Sbjct: 118 LEAVQGVTQFTLPQSTLRKVIDKTSFAMAQQDVRYYLNGLMLELDGSTVR--AVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E D I +I+PRK V E+ R+L ++ +VSLS + I +++ +L + + Sbjct: 176 LALCETDAGLDIGDKKQVIIPRKGVQELSRLLDDEERDAEVSLSNNHIQVDLGNLRFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+YQ V+P + DK + + +L+ A+ R S++S+ + + V+L + L + + Sbjct: 236 LIDGRFPDYQRVMPANCDKVVSADKQDLKLALTRTSVLSNEKYKGVRLVADNGALTIQTN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + V Y M+I FN Y+L++++N++ ++ V L +NSS + Sbjct: 296 NPEQEEAEEQLEVQYQGENMEIGFNVNYMLDVLNNLT-----EELVTIALKDANSSCLVE 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 351 ---------EVGEQTAKYVIMPMRL 366 >gi|271498580|ref|YP_003331605.1| DNA polymerase III subunit beta [Dickeya dadantii Ech586] gi|270342135|gb|ACZ74900.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech586] Length = 366 Score = 226 bits (576), Expect = 5e-57, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+IS E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV R+ ++S + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEEV-------RMLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QLEDAASQ-------AAAYVVMPMRL 366 >gi|323493782|ref|ZP_08098900.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546] gi|323311916|gb|EGA65062.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546] Length = 366 Score = 226 bits (575), Expect = 6e-57, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D + I+F + G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDSVITFVLD---GDRVQVRSGRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++V + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQVQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|260774982|ref|ZP_05883882.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260609072|gb|EEX35231.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 366 Score = 225 bits (574), Expect = 7e-57, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERNHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNMLSMTATDLEVELISRVALE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS+TV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++V + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQVQLGADFAQQ-QIIVPRKGVLELVKLLDAPEQPVTLQIGSSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQTTTKTLEAECDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASAMI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D A YV+MP+R+ Sbjct: 350 ENVDDDG---------AMYVVMPIRL 366 >gi|121587274|ref|ZP_01677047.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80] gi|261213262|ref|ZP_05927544.1| DNA polymerase III beta subunit [Vibrio sp. RC341] gi|121548520|gb|EAX58576.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80] gi|260837536|gb|EEX64239.1| DNA polymerase III beta subunit [Vibrio sp. RC341] Length = 366 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ D L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEDNQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|332533699|ref|ZP_08409558.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332036863|gb|EGI73324.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 367 Score = 225 bits (574), Expect = 8e-57, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 219/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ + Sbjct: 1 MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60 Query: 61 VDVCGS-ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 D+ + +T+ A L DI + L DG+ I+ +E++L ++ G S F L + +F Sbjct: 61 DDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQL----LLTSGKSRFSLTTLSADDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDG Sbjct: 117 PNLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+A+ + + +I+PRK V EI+R++ + D V + + I + + + Sbjct: 175 HRLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 235 SKLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V+F L SNSS Sbjct: 295 ANNPEQEQAEEVVEVSYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G + A YV+MPMR+ Sbjct: 350 IEGAGDEE---------AMYVVMPMRL 367 >gi|307133246|ref|YP_003885262.1| DNA polymerase III, subunit beta [Dickeya dadantii 3937] gi|306530775|gb|ADN00706.1| DNA polymerase III, beta subunit [Dickeya dadantii 3937] Length = 366 Score = 225 bits (574), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+IS E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F + E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDAASQ-------AAAYVVMPMRL 366 >gi|114319168|ref|YP_740851.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114225562|gb|ABI55361.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 366 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 210/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R D+L+ L ++ER+ T+PV +V L+ DGL + A+ E+E+ ++P Sbjct: 1 MRIDIQREDLLKPLQAIIGVVERRQTLPVLANVRLELGDGLARLTATDLEVELVASLPCQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G IT+ A L DI R L D +QI + E ++ G S F L + ++PS Sbjct: 61 VTEGGDITLPARKLLDICRNLPDQSQIQLQVDGE---RASLRAGRSRFTLATLSADDYPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + L L+ L+ERTHF+MA +++RYYLNG+ + ++ VATDGHR Sbjct: 118 IEDIGARETVRLPQGQLRKLIERTHFSMAVQDVRYYLNGLMVELEPAMARM--VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AE I + +IVPRK V E+LR+L D + L ++ I + + + + + Sbjct: 176 LALAEQAIDTGVEAPRQVIVPRKGVQELLRLLDHSDEGADLELGDNHIRVKLGDVRFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ V+P + + VN +LR A+ RVSI+S+ + + V+ L L + Sbjct: 236 LIDGRFPDYRRVVPEATETPATVNREDLRHALLRVSILSNEKYRGVRFLLDGGTLKVASH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E ++V Y P+++ FN Y+L+ + + D++V L S SS I+ Sbjct: 296 NPEQEEAEEEVSVDYGGAPLEVGFNAGYVLDALGALD-----DEDVRLTLRDSASSGLIQ 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G D + YV+MPMR+ Sbjct: 351 GVDDQTSR---------YVVMPMRL 366 >gi|251787654|ref|YP_003002375.1| DNA polymerase III subunit beta [Dickeya zeae Ech1591] gi|247536275|gb|ACT04896.1| DNA polymerase III, beta subunit [Dickeya zeae Ech1591] Length = 366 Score = 225 bits (573), Expect = 9e-57, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV R+ ++S + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEEV-------RMLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QLEDAASQ-------AAAYVVMPMRL 366 >gi|268593489|ref|ZP_06127710.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131] gi|291310911|gb|EFE51364.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131] Length = 366 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER +L+ L + + T+P+ ++LLQ +G L++ + E+E+ + + Sbjct: 1 MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGTLQLTGTDLEMEMMANVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I ++ + + G S F L + P ++FP Sbjct: 61 GEHEIGATTVPARKFFDIWRGLPEGSEIHVELNDD---RLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F ED L V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFET--EDQMLRTVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMDI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S + V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYILDVLNALKS-----ENVQLLLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D DSK A YV+MPMR+ Sbjct: 350 --EDADSK-------AAVYVVMPMRL 366 >gi|292490135|ref|YP_003533030.1| DNA polymerase III subunit beta [Erwinia amylovora CFBP1430] gi|292901139|ref|YP_003540508.1| DNA polymerase III subunit beta [Erwinia amylovora ATCC 49946] gi|291200987|emb|CBJ48126.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC 49946] gi|291555577|emb|CBA24171.1| DNA polymerase III, beta-subunit [Erwinia amylovora CFBP1430] gi|312174328|emb|CBX82581.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC BAA-2158] Length = 366 Score = 225 bits (573), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 1 MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALA 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A +DI R L +GA+I+ E E + + G S F L + P S+FP Sbjct: 61 QDHQPGATTVPARKFFDICRGLPEGAEIAVILEGE---RMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L + DS ++V + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELVRLLDAGDSLLQVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366 >gi|269962692|ref|ZP_06177037.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3] gi|269832615|gb|EEZ86729.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3] Length = 366 Score = 224 bits (572), Expect = 1e-56, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVALE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L S L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + D V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|311696594|gb|ADP99467.1| DNA polymerase III, beta chain [marine bacterium HP15] Length = 367 Score = 224 bits (572), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 218/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R +L L ++E+K T+PV +VLL A D L + + E+E+ + P Sbjct: 1 MKLTISRESLLTPLQSIAGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARVTPV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G ITV A L DI R L D A + E G +++ G S+F L + P FP Sbjct: 61 HVDQPGRITVPARKLSDISRALGDEAPMELSLE---GDRLHLRCGASHFTLSTLPAEHFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++E+ + EL L +++ T FAMA +++RYYLNG+ ++++ ++ VATDGH Sbjct: 118 NVEDEDESFRLELPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A +++ ++ +IVPRK V E+ R+L ++ V + + ++ + + S + + Sbjct: 176 RLAMAHLELATNCPELRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y VIP DK + + L+ + R I+S I+ V+L+L+S++L + Sbjct: 236 KLIEGKFPDYNRVIPRGGDKIVLADRATLKNTLQRAGILSHENIRGVRLNLASNELQVFA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +++ V Y + I FN YL+++++ + +D+V L + NSS I Sbjct: 296 NNPDQEQAEDALPVDYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLSNPNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ DN+ YV+MPMR+ Sbjct: 351 EAQN-------DNR--CLYVVMPMRL 367 >gi|326793324|ref|YP_004311144.1| DNA polymerase III subunit beta [Marinomonas mediterranea MMB-1] gi|326544088|gb|ADZ89308.1| DNA polymerase III, beta subunit [Marinomonas mediterranea MMB-1] Length = 365 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 142/389 (36%), Positives = 221/389 (56%), Gaps = 28/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L+ L ++ERK T+PV +VL++ D +L + S E+E+ G +P Sbjct: 1 MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQVLTLTGSDLEVELVGQVP-- 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D C G ITV A L DI + L D A I F + + + I G S F L + P EF Sbjct: 59 LDDCQEGRITVPARKLVDICKSLPDSAVIEFSLDEQ---KAIIRSGRSRFSLSTLPADEF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + + +A S ++ L++RT FAMA +++RYYLNG+ F + D +L VATDG Sbjct: 116 PNIQDMQGDLTVNVAQSSVRRLIDRTGFAMANQDVRYYLNGMLFEV--ADGQLRVVATDG 173 Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRLA A D AQ++ + +IVPRK V E+ R+LS D V++ + + + I+ + Sbjct: 174 HRLATAIED--AQVSGDLTQVIVPRKGVLELNRLLSDTDELVELKIGSNHVRATIDDYTF 231 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG+FP+Y VIP +N+K + + LRQ R SI+S+ + + V+L LS+ L + Sbjct: 232 TSKLVDGKFPDYHRVIPRNNEKMVIADRQELRQVFLRASILSNEKYRGVRLILSNGMLQV 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSS 356 +NP+ +A ES+ V Y M++ FN YLL+++ VVD EV ++ SNSS Sbjct: 292 FANNPEQEEAEESVLVQYQGDGMEVGFNVGYLLDVLG------VVDAQEVRIAMNDSNSS 345 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + A YV+MPMR+ Sbjct: 346 ALIEEAQSHA---------AQYVVMPMRL 365 >gi|157368282|ref|YP_001476271.1| DNA polymerase III subunit beta [Serratia proteamaculans 568] gi|157320046|gb|ABV39143.1| DNA polymerase III, beta subunit [Serratia proteamaculans 568] Length = 366 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ E E + + G S F L + P +FP Sbjct: 61 QPHEAGATTVPARKLFDICRGLPEGAEITVTLEGE---RMLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPIGQQLPSH-SVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D SK +A YV+MPMR+ Sbjct: 348 QIEDGASK-------SAAYVVMPMRL 366 >gi|110832863|ref|YP_691722.1| DNA polymerase III subunit beta [Alcanivorax borkumensis SK2] gi|110645974|emb|CAL15450.1| DNA polymerase III, beta subunit [Alcanivorax borkumensis SK2] Length = 366 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 130/388 (33%), Positives = 221/388 (56%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +L+ L ++E++ T+PV +VLL+ DG L + + E+E+ +P Sbjct: 1 MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G TV A L DI + L A I F + E + + G S F L + P SEFP Sbjct: 61 GELEPGETTVPARKLVDIGKSLPAEADIRFEVDGE---RMLVRSGRSRFTLSTLPASEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E+ S E+ VL+ L++RT F+MA +++RYYLNG+ F + L+ AVATDGH Sbjct: 118 NLEEDAAGSSLEIKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKSGRLR--AVATDGH 175 Query: 180 RLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ AE+D+ + A S+I+PRK V E+ RIL ++++ + + + + +++ Sbjct: 176 RLALCDAELDVPVEEA---SVILPRKGVMELSRILGDSGEVARLTIGRNHVRIVVGAITF 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG+FP Y VIP +++ + LRQA+ RV+I+S+ + + V++ LS L + Sbjct: 233 TSKLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +NP+ +A E ++V +N P++I FN YLL++++ + + + SNSS Sbjct: 293 VANNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGG-----TQAELEMGDSNSSA 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D +SK A YV+MPMR+ Sbjct: 348 LV--FDPESK-------AAVYVVMPMRL 366 >gi|119471659|ref|ZP_01614044.1| DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [Alteromonadales bacterium TW-7] gi|119445438|gb|EAW26725.1| DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [Alteromonadales bacterium TW-7] Length = 367 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 218/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ + Sbjct: 1 MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60 Query: 61 VDVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ + +T+ A L DI + L +G+ I+ ++ ++ ++ G S F L + ++FP Sbjct: 61 DDIADTKLTLPAKKLLDICKSLPEGSDITLSLQDH---QLLLTSGKSRFSLTTLSAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDGH Sbjct: 118 NLEEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I+PRK V EI+R++ + D V + + I + + + Sbjct: 176 RLAIAQKKLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 236 KLVDGRFPDYRRVLPRGGDKTIIANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V F L SNSS I Sbjct: 296 NNPEQEQAEEVVEVNYQGDELEIGFNVSYVLDVLNTLKT-----EDVQFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D A YV+MPMR+ Sbjct: 351 EGAGDDE---------AMYVVMPMRL 367 >gi|229524914|ref|ZP_04414319.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis VL426] gi|229338495|gb|EEO03512.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis VL426] Length = 366 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ + + +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D+V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----DQVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|21229480|ref|NP_635397.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766354|ref|YP_241116.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188989398|ref|YP_001901408.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|21110940|gb|AAM39321.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571686|gb|AAY47096.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris str. 8004] gi|167731158|emb|CAP49330.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris] Length = 366 Score = 224 bits (571), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/385 (33%), Positives = 220/385 (57%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q N+G L + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTV---SQTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ + IIVPRK V E+LR+L + D V++ L S I + ++ + + Sbjct: 176 LALCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|323496928|ref|ZP_08101956.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326] gi|323318002|gb|EGA70985.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326] Length = 366 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS+TV + DI R L D + I+F E G V + G S F L + P S+FP Sbjct: 61 GEFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEISLSQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNLRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLETGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|262392782|ref|YP_003284636.1| DNA polymerase III subunit beta [Vibrio sp. Ex25] gi|262336376|gb|ACY50171.1| DNA polymerase III beta subunit [Vibrio sp. Ex25] Length = 366 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|149375635|ref|ZP_01893404.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893] gi|149360037|gb|EDM48492.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893] Length = 371 Score = 224 bits (570), Expect = 2e-56, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R +L L ++ERK T+PV +VLL A D L + + E+E+ G + P Sbjct: 5 MKLTISRESLLTPLQSIAGVVERKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVGRVSPV 64 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G ITV A L DI R L D A I E G +++ G S+F L + P FP Sbjct: 65 HVDQPGRITVPARKLSDICRALGDEAPIELALE---GDRLHLRCGASHFTLSTLPAEHFP 121 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +++ + EL L + + T FAMA +++RYYLNG+ ++++ ++ VATDGH Sbjct: 122 NVEDDAESFGLELPQKELSRMFDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 179 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A D+ + +IVPRK V E+ R+L ++ V + + ++ + + S + + Sbjct: 180 RLAMAHFDLPTGCPEPRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 239 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y VIP DK + + L+ + R I+S I+ V+L+L+ ++L + Sbjct: 240 KLIEGKFPDYNRVIPRGGDKVVLADRATLKNTLQRAGILSHENIRGVRLNLAPNELQVFA 299 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +++ V Y + I FN YL+++++ + +D+V L + NSS I Sbjct: 300 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLANPNSSALI 354 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ DN+ YV+MPMR+ Sbjct: 355 EAEN-------DNR--CLYVVMPMRL 371 >gi|322830735|ref|YP_004210762.1| DNA polymerase III, subunit beta [Rahnella sp. Y9602] gi|321165936|gb|ADW71635.1| DNA polymerase III, beta subunit [Rahnella sp. Y9602] Length = 366 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTDGALSLTGTDLEMEMVAKVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+IS + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEISVALD---GDRMLVKSGRSRFSLSTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+++++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTTLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLQAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVGYEGTEMEIGFNVSYVLDVLNALKC-----EDVNLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|269965277|ref|ZP_06179398.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B] gi|269830078|gb|EEZ84306.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B] Length = 366 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|254428026|ref|ZP_05041733.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881] gi|196194195|gb|EDX89154.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881] Length = 366 Score = 224 bits (570), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +L+ L ++E++ T+PV +VLL+ DG L + + E+E+ +P Sbjct: 1 MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI + L A I F + E + + G S F L + P SEFP Sbjct: 61 GEQEPGETTVPARKLVDIAKSLPAEADIRFEVDGE---RMLVRSGRSRFTLSTLPASEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E+ E+ VL+ L++RT F+MA +++RYYLNG+ F + L+ AVATDGH Sbjct: 118 NLEEDAAGSRLEMKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKPGRLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + ++ A + + S+I+PRK V E+ RIL + ++++ + + + + +++ + Sbjct: 176 RLALCDAELDAPVEEA-SVILPRKGVMELSRILGDSGEAARLTIGRNHVRIVVGAITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y VIP +++ + LRQA+ RV+I+S+ + + V++ LS L + Sbjct: 235 KLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRIVA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V +N P++I FN YLL++++ + + + SNSS + Sbjct: 295 NNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGG-----TQAELEMGDSNSSALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +SK A YV+MPMR+ Sbjct: 350 --FDPESK-------AAVYVVMPMRL 366 >gi|153802490|ref|ZP_01957076.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3] gi|229530201|ref|ZP_04419590.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)] gi|262402081|ref|ZP_06078645.1| DNA polymerase III beta subunit [Vibrio sp. RC586] gi|124121960|gb|EAY40703.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3] gi|229332334|gb|EEN97821.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)] gi|262351727|gb|EEZ00859.1| DNA polymerase III beta subunit [Vibrio sp. RC586] gi|327482926|gb|AEA77333.1| DNA polymerase III beta subunit [Vibrio cholerae LMA3894-4] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|259910294|ref|YP_002650650.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96] gi|224965916|emb|CAX57449.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96] gi|283480418|emb|CAY76334.1| DNA polymerase III, beta-subunit [Erwinia pyrifoliae DSM 12163] gi|310765873|gb|ADP10823.1| DNA polymerase III subunit beta [Erwinia sp. Ejp617] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 1 MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A +DI R L +GA+I+ E E + + G S F L + P S+FP Sbjct: 61 HDHQPGATTVPARKFFDICRGLPEGAEIAVILEGE---RMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L DS +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELVRLLDGGDSLLQIQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366 >gi|156936081|ref|YP_001439997.1| DNA polymerase III subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156534335|gb|ABU79161.1| hypothetical protein ESA_03975 [Cronobacter sakazakii ATCC BAA-894] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + +S G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F EDL+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMP-VGQPLPNHSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ ++ +A YV+MPMR+ Sbjct: 350 ----EDAASS-----SAAYVVMPMRL 366 >gi|260595831|ref|YP_003208402.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032] gi|260215008|emb|CBA26670.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + +S G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F EDL+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQPLPNHSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ ++ +A YV+MPMR+ Sbjct: 350 ----EDAASS-----SAAYVVMPMRL 366 >gi|28896786|ref|NP_796391.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|260363485|ref|ZP_05776318.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030] gi|260876544|ref|ZP_05888899.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260901415|ref|ZP_05909810.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037] gi|28804994|dbj|BAC58275.1| DNA polymerase III, beta chain [Vibrio parahaemolyticus RIMD 2210633] gi|308090394|gb|EFO40089.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308107195|gb|EFO44735.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308113560|gb|EFO51100.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030] gi|328471239|gb|EGF42141.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus 10329] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRC-----EKVQVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|315178625|gb|ADT85539.1| DNA polymerase III, beta chain [Vibrio furnissii NCTC 11218] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS ++ L + + T+P+ ++LL+ D L + A+ E+E+ + Sbjct: 1 MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A DI R L D A I+ E G V + G S F L + P S+FP Sbjct: 61 GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ ++ A A IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDALEQPVVLQIGSSNLRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + +K L+ C LRQA R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + D V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|317494668|ref|ZP_07953080.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917270|gb|EFV38617.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 366 Score = 223 bits (569), Expect = 3e-56, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ DG L + + E+E+ +P A Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLLLTGTDLEMEMIARVPLA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L DGA+I+ + G + + G S F L + P ++FP Sbjct: 61 QEHETGATTVPARKFFDICRGLPDGAEITVVLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKKLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+ R+L ++ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSVPSHSVIVPRKGVMELSRLLDGGETPLRLQIGSNNIRAHVGGFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKAGCDELKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVNYEGTDLEIGFNVSYVLDVLNALKC-----EDVHMLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|15640045|ref|NP_062597.1| DNA polymerase III subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727891|ref|ZP_01680950.1| DNA polymerase III, beta chain [Vibrio cholerae V52] gi|147674757|ref|YP_001218399.1| DNA polymerase III subunit beta [Vibrio cholerae O395] gi|153819849|ref|ZP_01972516.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457] gi|153821934|ref|ZP_01974601.1| DNA polymerase III, beta chain [Vibrio cholerae B33] gi|227080250|ref|YP_002808801.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2] gi|229508298|ref|ZP_04397802.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286] gi|229508863|ref|ZP_04398354.1| DNA polymerase III beta subunit [Vibrio cholerae B33] gi|229517134|ref|ZP_04406580.1| DNA polymerase III beta subunit [Vibrio cholerae RC9] gi|229606572|ref|YP_002877220.1| DNA polymerase III subunit beta [Vibrio cholerae MJ-1236] gi|254851578|ref|ZP_05240928.1| DNA polymerase III subunit beta [Vibrio cholerae MO10] gi|262155884|ref|ZP_06029006.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1] gi|262167101|ref|ZP_06034816.1| DNA polymerase III beta subunit [Vibrio cholerae RC27] gi|298501198|ref|ZP_07010997.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757] gi|14547987|sp|Q9KVX5|DPO3B_VIBCH RecName: Full=DNA polymerase III subunit beta gi|9654404|gb|AAF93191.1| DNA polymerase III, beta chain [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629835|gb|EAX62250.1| DNA polymerase III, beta chain [Vibrio cholerae V52] gi|126509610|gb|EAZ72204.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457] gi|126520554|gb|EAZ77777.1| DNA polymerase III, beta chain [Vibrio cholerae B33] gi|146316640|gb|ABQ21179.1| DNA polymerase III, beta chain [Vibrio cholerae O395] gi|227008138|gb|ACP04350.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2] gi|227011984|gb|ACP08194.1| DNA polymerase III, beta chain [Vibrio cholerae O395] gi|229346197|gb|EEO11169.1| DNA polymerase III beta subunit [Vibrio cholerae RC9] gi|229354138|gb|EEO19070.1| DNA polymerase III beta subunit [Vibrio cholerae B33] gi|229354571|gb|EEO19493.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286] gi|229369227|gb|ACQ59650.1| DNA polymerase III beta subunit [Vibrio cholerae MJ-1236] gi|254847283|gb|EET25697.1| DNA polymerase III subunit beta [Vibrio cholerae MO10] gi|262024487|gb|EEY43173.1| DNA polymerase III beta subunit [Vibrio cholerae RC27] gi|262030336|gb|EEY48978.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1] gi|297540070|gb|EFH76132.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757] Length = 366 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ + + +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|325915700|ref|ZP_08178005.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538117|gb|EGD09808.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 366 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 126/385 (32%), Positives = 218/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVAVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ IIVPRK V E+LR+L + D V++ + S I + ++ + + Sbjct: 176 LALCETELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|91228347|ref|ZP_01262275.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01] gi|91188107|gb|EAS74411.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01] Length = 366 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVMLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|83642916|ref|YP_431351.1| DNA polymerase III subunit beta [Hahella chejuensis KCTC 2396] gi|83630959|gb|ABC26926.1| DNA polymerase III, beta subunit [Hahella chejuensis KCTC 2396] Length = 367 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+T+ R ++ L ++E++ T+PV +VLL A DG L I + E+E+ I Sbjct: 1 MKLTITREALVTSLQMISGVVEKRQTMPVLANVLLDARDGKLVITGTNMEVELVAEISDV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 +++ ITV A DI R L +GA I K+ L N+ +G S+F L + P F Sbjct: 61 NIEHESRITVPAKKFTDICRALPEGAAIGIELKDGRL----NVRYGSSHFILSTLPAEHF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +EE L LK L++ T FAMA +++RYYLNG+ ++E+ L+ VATDG Sbjct: 117 PNVEEEPESVKVTLPQRELKRLIDATAFAMAQQDVRYYLNGMLMELDEQGLR--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+A V + +++ IVPRK + E+ R+L+ D S + ++ + ++ + + Sbjct: 175 HRLALANVSLQTGVSEKRQPIVPRKGILELGRLLNDTDESCTLVFGDNHVRASVGHFTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG+FP+YQ VIP S DK + + L+ + R SI+S I+ V+L L + Sbjct: 235 SKLIDGKFPDYQRVIPRSGDKVMLADRVLLKGVLSRASILSHESIRGVRLQFEEGLLKVF 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD +A +S+ V Y + I FN YL+++++ + D++V L ++NSS Sbjct: 295 ANNPDQEEAEDSLEVEYPHEALQIGFNVGYLIDVLNALD-----DEQVKVTLSNANSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G D +A YV+MPMR+ Sbjct: 350 VEGVDTR---------DAVYVVMPMRL 367 >gi|325499508|gb|EGC97367.1| DNA polymerase III subunit beta [Escherichia fergusonii ECD227] Length = 366 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGTTTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|183597171|ref|ZP_02958664.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827] gi|188023485|gb|EDU61525.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827] Length = 366 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ +P + Sbjct: 1 MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALLLTGTDLEMEMMAHVPLT 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I +++ + + G S F L + P ++FP Sbjct: 61 QEHDVGATTVPARKFFDIWRGLPEGSEIRVELDDD---RLLVRSGRSRFSLSTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F + L+ V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI Q S+IVPRK V E++R+L D+ V++ + + I ++ + Sbjct: 176 RLAVCAMDI-GQDLPSHSVIVPRKGVIELMRLLDGGDTPVQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S+ V +F D+ SSV I Sbjct: 295 NNPEQEEAEEIVDVNYQGTEMEIGFNVSYILDVLNALKSENV----TLFLTDAV-SSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DS ++ A YV+MPMR+ Sbjct: 350 ----EDSASSA-----AVYVVMPMRL 366 >gi|15804295|ref|NP_290334.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 EDL933] gi|15833890|ref|NP_312663.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16131569|ref|NP_418156.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|26250442|ref|NP_756482.1| DNA polymerase III subunit beta [Escherichia coli CFT073] gi|74314015|ref|YP_312434.1| DNA polymerase III subunit beta [Shigella sonnei Ss046] gi|82546035|ref|YP_409982.1| DNA polymerase III subunit beta [Shigella boydii Sb227] gi|82779230|ref|YP_405579.1| DNA polymerase III subunit beta [Shigella dysenteriae Sd197] gi|89110312|ref|AP_004092.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|91213223|ref|YP_543209.1| DNA polymerase III subunit beta [Escherichia coli UTI89] gi|110644044|ref|YP_671774.1| DNA polymerase III subunit beta [Escherichia coli 536] gi|117625977|ref|YP_859300.1| DNA polymerase III subunit beta [Escherichia coli APEC O1] gi|157156673|ref|YP_001465186.1| DNA polymerase III subunit beta [Escherichia coli E24377A] gi|157163181|ref|YP_001460499.1| DNA polymerase III subunit beta [Escherichia coli HS] gi|168748583|ref|ZP_02773605.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168753590|ref|ZP_02778597.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168759887|ref|ZP_02784894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168766188|ref|ZP_02791195.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168772264|ref|ZP_02797271.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168779923|ref|ZP_02804930.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168798736|ref|ZP_02823743.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC508] gi|170018063|ref|YP_001723017.1| DNA polymerase III subunit beta [Escherichia coli ATCC 8739] gi|170083203|ref|YP_001732523.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170682488|ref|YP_001746029.1| DNA polymerase III subunit beta [Escherichia coli SMS-3-5] gi|187730327|ref|YP_001882465.1| DNA polymerase III subunit beta [Shigella boydii CDC 3083-94] gi|188492542|ref|ZP_02999812.1| DNA polymerase III, beta subunit [Escherichia coli 53638] gi|191165808|ref|ZP_03027646.1| DNA polymerase III, beta subunit [Escherichia coli B7A] gi|191170441|ref|ZP_03031994.1| DNA polymerase III, beta subunit [Escherichia coli F11] gi|193063787|ref|ZP_03044874.1| DNA polymerase III, beta subunit [Escherichia coli E22] gi|194428142|ref|ZP_03060686.1| DNA polymerase III, beta subunit [Escherichia coli B171] gi|194431323|ref|ZP_03063616.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012] gi|194435912|ref|ZP_03068015.1| DNA polymerase III, beta subunit [Escherichia coli 101-1] gi|195936322|ref|ZP_03081704.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208807282|ref|ZP_03249619.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208813217|ref|ZP_03254546.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208820496|ref|ZP_03260816.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209400437|ref|YP_002273227.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209921178|ref|YP_002295262.1| DNA polymerase III subunit beta [Escherichia coli SE11] gi|217324148|ref|ZP_03440232.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218551231|ref|YP_002385023.1| DNA polymerase III subunit beta [Escherichia fergusonii ATCC 35469] gi|218556266|ref|YP_002389180.1| DNA polymerase III subunit beta [Escherichia coli IAI1] gi|218560776|ref|YP_002393689.1| DNA polymerase III subunit beta [Escherichia coli S88] gi|218691989|ref|YP_002400201.1| DNA polymerase III subunit beta [Escherichia coli ED1a] gi|218697423|ref|YP_002405090.1| DNA polymerase III subunit beta [Escherichia coli 55989] gi|218702550|ref|YP_002410179.1| DNA polymerase III subunit beta [Escherichia coli IAI39] gi|218707347|ref|YP_002414866.1| DNA polymerase III subunit beta [Escherichia coli UMN026] gi|227883922|ref|ZP_04001727.1| DNA-directed DNA polymerase [Escherichia coli 83972] gi|237703501|ref|ZP_04533982.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA] gi|238902791|ref|YP_002928587.1| DNA polymerase III, beta subunit [Escherichia coli BW2952] gi|253771437|ref|YP_003034268.1| DNA polymerase III subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038918|ref|ZP_04872970.1| DNA polymerase III [Escherichia sp. 1_1_43] gi|254163652|ref|YP_003046760.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606] gi|254795704|ref|YP_003080541.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256021281|ref|ZP_05435146.1| DNA polymerase III subunit beta [Shigella sp. D9] gi|256025568|ref|ZP_05439433.1| DNA polymerase III subunit beta [Escherichia sp. 4_1_40B] gi|260846514|ref|YP_003224292.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260857888|ref|YP_003231779.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260870432|ref|YP_003236834.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str. 11128] gi|261225854|ref|ZP_05940135.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258899|ref|ZP_05951432.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285120|ref|YP_003501938.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. CB9615] gi|293407341|ref|ZP_06651263.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412] gi|293413155|ref|ZP_06655821.1| DNA polymerase III [Escherichia coli B354] gi|293417174|ref|ZP_06659801.1| DNA polymerase III [Escherichia coli B185] gi|297518856|ref|ZP_06937242.1| DNA polymerase III subunit beta [Escherichia coli OP50] gi|298383082|ref|ZP_06992677.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302] gi|300824314|ref|ZP_07104430.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7] gi|300896030|ref|ZP_07114591.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1] gi|300903024|ref|ZP_07120966.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1] gi|300917469|ref|ZP_07134129.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1] gi|300925525|ref|ZP_07141400.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1] gi|300932332|ref|ZP_07147600.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1] gi|300940886|ref|ZP_07155413.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1] gi|300947538|ref|ZP_07161715.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1] gi|300956293|ref|ZP_07168595.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1] gi|300983652|ref|ZP_07176693.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1] gi|300984541|ref|ZP_07177031.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1] gi|301020910|ref|ZP_07184965.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1] gi|301028494|ref|ZP_07191734.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1] gi|301047519|ref|ZP_07194595.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1] gi|301305953|ref|ZP_07212035.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1] gi|301325007|ref|ZP_07218557.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1] gi|301644373|ref|ZP_07244374.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1] gi|306815946|ref|ZP_07450084.1| DNA polymerase III subunit beta [Escherichia coli NC101] gi|307140401|ref|ZP_07499757.1| DNA polymerase III subunit beta [Escherichia coli H736] gi|307313230|ref|ZP_07592855.1| DNA polymerase III, beta subunit [Escherichia coli W] gi|309784249|ref|ZP_07678888.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617] gi|309795750|ref|ZP_07690165.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7] gi|312972007|ref|ZP_07786181.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70] gi|331644425|ref|ZP_08345554.1| DNA polymerase III, beta subunit [Escherichia coli H736] gi|331649527|ref|ZP_08350613.1| DNA polymerase III, beta subunit [Escherichia coli M605] gi|331655361|ref|ZP_08356360.1| DNA polymerase III, beta subunit [Escherichia coli M718] gi|331660043|ref|ZP_08360981.1| DNA polymerase III, beta subunit [Escherichia coli TA206] gi|331665351|ref|ZP_08366252.1| DNA polymerase III, beta subunit [Escherichia coli TA143] gi|331670545|ref|ZP_08371384.1| DNA polymerase III, beta subunit [Escherichia coli TA271] gi|331675191|ref|ZP_08375944.1| DNA polymerase III, beta subunit [Escherichia coli TA280] gi|331679799|ref|ZP_08380469.1| DNA polymerase III, beta subunit [Escherichia coli H591] gi|331685425|ref|ZP_08386011.1| DNA polymerase III, beta subunit [Escherichia coli H299] gi|332282512|ref|ZP_08394925.1| DNA polymerase III subunit beta [Shigella sp. D9] gi|71159295|sp|P0A990|DPO3B_ECO57 RecName: Full=DNA polymerase III subunit beta gi|71159296|sp|P0A989|DPO3B_ECOL6 RecName: Full=DNA polymerase III subunit beta gi|71159297|sp|P0A988|DPO3B_ECOLI RecName: Full=DNA polymerase III subunit beta gi|494833|pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of Escherichia Coli Dna Polymerase Iii Holoenzyme: A Sliding Dna Clamp gi|494834|pdb|2POL|B Chain B, Three-Dimensional Structure Of The Beta Subunit Of Escherichia Coli Dna Polymerase Iii Holoenzyme: A Sliding Dna Clamp gi|34809863|pdb|1MMI|A Chain A, E. Coli Dna Polymerase Beta Subunit gi|34809864|pdb|1MMI|B Chain B, E. Coli Dna Polymerase Beta Subunit gi|39654966|pdb|1UNN|A Chain A, Complex Of Beta-Clamp Processivity Factor And Little Finger Domain Of Poliv gi|39654967|pdb|1UNN|B Chain B, Complex Of Beta-Clamp Processivity Factor And Little Finger Domain Of Poliv gi|51247132|pdb|1OK7|A Chain A, A Conserved Protein Binding-Site On Bacterial Sliding Clamps gi|51247133|pdb|1OK7|B Chain B, A Conserved Protein Binding-Site On Bacterial Sliding Clamps gi|166235467|pdb|3BEP|A Chain A, Structure Of A Sliding Clamp On Dna gi|166235468|pdb|3BEP|B Chain B, Structure Of A Sliding Clamp On Dna gi|194709177|pdb|3D1E|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Ii Peptide gi|194709178|pdb|3D1E|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Ii Peptide gi|194709180|pdb|3D1F|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Iii Peptide gi|194709181|pdb|3D1F|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Iii Peptide gi|194709184|pdb|3D1G|A Chain A, Structure Of A Small Molecule Inhibitor Bound To A Dna Sliding Clamp gi|194709185|pdb|3D1G|B Chain B, Structure Of A Small Molecule Inhibitor Bound To A Dna Sliding Clamp gi|12518540|gb|AAG58898.1|AE005601_4 DNA polymerase III, beta-subunit [Escherichia coli O157:H7 str. EDL933] gi|26110872|gb|AAN83056.1|AE016769_171 DNA polymerase III, beta chain [Escherichia coli CFT073] gi|145761|gb|AAB59150.1| DNA polymerase III beta-subunit [Escherichia coli] gi|290549|gb|AAA62052.1| DNA polymerase III beta-subunit [Escherichia coli] gi|1790136|gb|AAC76724.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13364111|dbj|BAB38059.1| DNA polymerase III beta-subunit [Escherichia coli O157:H7 str. Sakai] gi|73857492|gb|AAZ90199.1| DNA polymerase III beta subunit [Shigella sonnei Ss046] gi|81243378|gb|ABB64088.1| DNA polymerase III, beta-subunit [Shigella dysenteriae Sd197] gi|81247446|gb|ABB68154.1| DNA polymerase III beta-subunit [Shigella boydii Sb227] gi|85676343|dbj|BAE77593.1| DNA polymerase III, beta subunit [Escherichia coli str. K12 substr. W3110] gi|91074797|gb|ABE09678.1| DNA polymerase III, beta-subunit [Escherichia coli UTI89] gi|110345636|gb|ABG71873.1| DNA polymerase III, beta chain [Escherichia coli 536] gi|115515101|gb|ABJ03176.1| DNA polymerase III subunit beta [Escherichia coli APEC O1] gi|157068861|gb|ABV08116.1| DNA polymerase III, beta subunit [Escherichia coli HS] gi|157078703|gb|ABV18411.1| DNA polymerase III, beta subunit [Escherichia coli E24377A] gi|169752991|gb|ACA75690.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 8739] gi|169891038|gb|ACB04745.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170520206|gb|ACB18384.1| DNA polymerase III, beta subunit [Escherichia coli SMS-3-5] gi|187427319|gb|ACD06593.1| DNA polymerase III, beta subunit [Shigella boydii CDC 3083-94] gi|187771361|gb|EDU35205.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188016968|gb|EDU55090.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|188487741|gb|EDU62844.1| DNA polymerase III, beta subunit [Escherichia coli 53638] gi|189002623|gb|EDU71609.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189359039|gb|EDU77458.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189364639|gb|EDU83058.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189369478|gb|EDU87894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189378717|gb|EDU97133.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC508] gi|190904132|gb|EDV63843.1| DNA polymerase III, beta subunit [Escherichia coli B7A] gi|190909249|gb|EDV68835.1| DNA polymerase III, beta subunit [Escherichia coli F11] gi|192930502|gb|EDV83109.1| DNA polymerase III, beta subunit [Escherichia coli E22] gi|194413900|gb|EDX30178.1| DNA polymerase III, beta subunit [Escherichia coli B171] gi|194420778|gb|EDX36854.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012] gi|194425455|gb|EDX41439.1| DNA polymerase III, beta subunit [Escherichia coli 101-1] gi|208727083|gb|EDZ76684.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208734494|gb|EDZ83181.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740619|gb|EDZ88301.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209161837|gb|ACI39270.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209754118|gb|ACI75366.1| replication initiation protein DnaA [Escherichia coli] gi|209754120|gb|ACI75367.1| replication initiation protein DnaA [Escherichia coli] gi|209754122|gb|ACI75368.1| replication initiation protein DnaA [Escherichia coli] gi|209754124|gb|ACI75369.1| replication initiation protein DnaA [Escherichia coli] gi|209754126|gb|ACI75370.1| replication initiation protein DnaA [Escherichia coli] gi|209914437|dbj|BAG79511.1| DNA polymerase III beta subunit [Escherichia coli SE11] gi|217320369|gb|EEC28793.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218354155|emb|CAV00755.1| DNA polymerase III, beta subunit [Escherichia coli 55989] gi|218358773|emb|CAQ91430.1| DNA polymerase III, beta subunit [Escherichia fergusonii ATCC 35469] gi|218363035|emb|CAR00674.1| DNA polymerase III, beta subunit [Escherichia coli IAI1] gi|218367545|emb|CAR05330.1| DNA polymerase III, beta subunit [Escherichia coli S88] gi|218372536|emb|CAR20411.1| DNA polymerase III, beta subunit [Escherichia coli IAI39] gi|218429553|emb|CAR10376.1| DNA polymerase III, beta subunit [Escherichia coli ED1a] gi|218434444|emb|CAR15372.1| DNA polymerase III, beta subunit [Escherichia coli UMN026] gi|222035415|emb|CAP78160.1| DNA polymerase III subunit beta [Escherichia coli LF82] gi|226838883|gb|EEH70910.1| DNA polymerase III [Escherichia sp. 1_1_43] gi|226902765|gb|EEH89024.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA] gi|227839200|gb|EEJ49666.1| DNA-directed DNA polymerase [Escherichia coli 83972] gi|238860831|gb|ACR62829.1| DNA polymerase III, beta subunit [Escherichia coli BW2952] gi|242379240|emb|CAQ34045.1| dnaN, subunit of DNA polymerase III, beta subunit and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253322481|gb|ACT27083.1| DNA polymerase III, beta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975553|gb|ACT41224.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606] gi|253979709|gb|ACT45379.1| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)] gi|254595104|gb|ACT74465.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257756537|dbj|BAI28039.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257761661|dbj|BAI33158.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257766788|dbj|BAI38283.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str. 11128] gi|260447281|gb|ACX37703.1| DNA polymerase III, beta subunit [Escherichia coli DH1] gi|281180755|dbj|BAI57085.1| DNA polymerase III beta subunit [Escherichia coli SE15] gi|290764993|gb|ADD58954.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. CB9615] gi|291425632|gb|EFE98668.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412] gi|291431205|gb|EFF04198.1| DNA polymerase III [Escherichia coli B185] gi|291468288|gb|EFF10783.1| DNA polymerase III [Escherichia coli B354] gi|294492870|gb|ADE91626.1| DNA polymerase III, beta subunit [Escherichia coli IHE3034] gi|298276918|gb|EFI18436.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302] gi|299878456|gb|EFI86667.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1] gi|300300579|gb|EFJ56964.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1] gi|300306875|gb|EFJ61395.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1] gi|300316880|gb|EFJ66664.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1] gi|300360090|gb|EFJ75960.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1] gi|300398377|gb|EFJ81915.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1] gi|300404930|gb|EFJ88468.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1] gi|300408374|gb|EFJ91912.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1] gi|300415273|gb|EFJ98583.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1] gi|300418365|gb|EFK01676.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1] gi|300452875|gb|EFK16495.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1] gi|300454367|gb|EFK17860.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1] gi|300459918|gb|EFK23411.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1] gi|300523201|gb|EFK44270.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7] gi|300838804|gb|EFK66564.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1] gi|300848101|gb|EFK75861.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1] gi|301077314|gb|EFK92120.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1] gi|305850342|gb|EFM50799.1| DNA polymerase III subunit beta [Escherichia coli NC101] gi|306906913|gb|EFN37422.1| DNA polymerase III, beta subunit [Escherichia coli W] gi|307555841|gb|ADN48616.1| DNA polymerase III, beta-subunit [Escherichia coli ABU 83972] gi|307628777|gb|ADN73081.1| DNA polymerase III subunit beta [Escherichia coli UM146] gi|308120629|gb|EFO57891.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7] gi|308927756|gb|EFP73224.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617] gi|309704148|emb|CBJ03495.1| DNA polymerase III beta-subunit [Escherichia coli ETEC H10407] gi|310334384|gb|EFQ00589.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70] gi|312948268|gb|ADR29095.1| DNA polymerase III subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|315063007|gb|ADT77334.1| DNA polymerase III, beta subunit [Escherichia coli W] gi|315138285|dbj|BAJ45444.1| DNA polymerase III subunit beta [Escherichia coli DH1] gi|315254612|gb|EFU34580.1| DNA polymerase III, beta subunit [Escherichia coli MS 85-1] gi|315285494|gb|EFU44939.1| DNA polymerase III, beta subunit [Escherichia coli MS 110-3] gi|315292859|gb|EFU52211.1| DNA polymerase III, beta subunit [Escherichia coli MS 153-1] gi|315296899|gb|EFU56187.1| DNA polymerase III, beta subunit [Escherichia coli MS 16-3] gi|315618593|gb|EFU99179.1| DNA polymerase III, beta subunit [Escherichia coli 3431] gi|320174825|gb|EFW49948.1| DNA polymerase III beta subunit [Shigella dysenteriae CDC 74-1112] gi|320180042|gb|EFW54984.1| DNA polymerase III beta subunit [Shigella boydii ATCC 9905] gi|320185534|gb|EFW60300.1| DNA polymerase III beta subunit [Shigella flexneri CDC 796-83] gi|320191199|gb|EFW65849.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str. EC1212] gi|320193753|gb|EFW68386.1| DNA polymerase III beta subunit [Escherichia coli WV_060327] gi|320201271|gb|EFW75852.1| DNA polymerase III beta subunit [Escherichia coli EC4100B] gi|320639426|gb|EFX09041.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. G5101] gi|320644869|gb|EFX13905.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. 493-89] gi|320650133|gb|EFX18629.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. H 2687] gi|320655481|gb|EFX23416.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661107|gb|EFX28543.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320666233|gb|EFX33239.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323155377|gb|EFZ41560.1| DNA polymerase III, beta subunit [Escherichia coli EPECa14] gi|323161047|gb|EFZ46966.1| DNA polymerase III, beta subunit [Escherichia coli E128010] gi|323164687|gb|EFZ50482.1| DNA polymerase III, beta subunit [Shigella sonnei 53G] gi|323173319|gb|EFZ58948.1| DNA polymerase III, beta subunit [Escherichia coli LT-68] gi|323177713|gb|EFZ63297.1| DNA polymerase III, beta subunit [Escherichia coli 1180] gi|323182496|gb|EFZ67900.1| DNA polymerase III, beta subunit [Escherichia coli 1357] gi|323189564|gb|EFZ74844.1| DNA polymerase III, beta subunit [Escherichia coli RN587/1] gi|323376399|gb|ADX48667.1| DNA polymerase III, beta subunit [Escherichia coli KO11] gi|323934948|gb|EGB31326.1| DNA polymerase III [Escherichia coli E1520] gi|323949944|gb|EGB45828.1| DNA polymerase III [Escherichia coli H252] gi|323955005|gb|EGB50783.1| DNA polymerase III [Escherichia coli H263] gi|323959766|gb|EGB55416.1| DNA polymerase III [Escherichia coli H489] gi|323965762|gb|EGB61213.1| DNA polymerase III [Escherichia coli M863] gi|323971178|gb|EGB66424.1| DNA polymerase III [Escherichia coli TA007] gi|323975232|gb|EGB70336.1| DNA polymerase III [Escherichia coli TW10509] gi|324008037|gb|EGB77256.1| DNA polymerase III, beta subunit [Escherichia coli MS 57-2] gi|324012738|gb|EGB81957.1| DNA polymerase III, beta subunit [Escherichia coli MS 60-1] gi|324018431|gb|EGB87650.1| DNA polymerase III, beta subunit [Escherichia coli MS 117-3] gi|324115947|gb|EGC09873.1| DNA polymerase III [Escherichia coli E1167] gi|326337250|gb|EGD61085.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str. 1044] gi|326341621|gb|EGD65410.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str. 1125] gi|327250844|gb|EGE62546.1| DNA polymerase III, beta subunit [Escherichia coli STEC_7v] gi|331036719|gb|EGI08945.1| DNA polymerase III, beta subunit [Escherichia coli H736] gi|331042025|gb|EGI14169.1| DNA polymerase III, beta subunit [Escherichia coli M605] gi|331047376|gb|EGI19454.1| DNA polymerase III, beta subunit [Escherichia coli M718] gi|331053258|gb|EGI25291.1| DNA polymerase III, beta subunit [Escherichia coli TA206] gi|331057861|gb|EGI29847.1| DNA polymerase III, beta subunit [Escherichia coli TA143] gi|331062607|gb|EGI34527.1| DNA polymerase III, beta subunit [Escherichia coli TA271] gi|331067636|gb|EGI39038.1| DNA polymerase III, beta subunit [Escherichia coli TA280] gi|331072971|gb|EGI44296.1| DNA polymerase III, beta subunit [Escherichia coli H591] gi|331077796|gb|EGI49008.1| DNA polymerase III, beta subunit [Escherichia coli H299] gi|332084052|gb|EGI89259.1| DNA polymerase III, beta subunit [Shigella dysenteriae 155-74] gi|332084891|gb|EGI90074.1| DNA polymerase III, beta subunit [Shigella boydii 5216-82] gi|332089554|gb|EGI94658.1| DNA polymerase III, beta subunit [Shigella boydii 3594-74] gi|332104864|gb|EGJ08210.1| DNA polymerase III subunit beta [Shigella sp. D9] gi|332345692|gb|AEE59026.1| DNA polymerase III, beta subunit DnaN [Escherichia coli UMNK88] Length = 366 Score = 223 bits (568), Expect = 4e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|284923784|emb|CBG36882.1| DNA polymerase III beta-subunit [Escherichia coli 042] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QSHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|293464025|ref|ZP_06664439.1| DNA polymerase III [Escherichia coli B088] gi|300815052|ref|ZP_07095277.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1] gi|291321657|gb|EFE61093.1| DNA polymerase III [Escherichia coli B088] gi|300531944|gb|EFK53006.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1] gi|323944173|gb|EGB40253.1| DNA polymerase III [Escherichia coli H120] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QQHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|290473096|ref|YP_003465957.1| DNA polymerase III subunit beta [Xenorhabdus bovienii SS-2004] gi|289172390|emb|CBJ79157.1| DNA polymerase III, beta-subunit [Xenorhabdus bovienii SS-2004] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 131/387 (33%), Positives = 215/387 (55%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK +ER +L+ L + + T+P+ ++LLQ + L + + E+E+ + Sbjct: 1 MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMKARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+F Sbjct: 61 QPHEQGATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ VATDG Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV ++I Q S+IVPRK V E++R+L DS +++ + + I ++ + Sbjct: 175 HRLAVCSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L + SSV Sbjct: 294 ANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVK 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + A YV+MPMR+ Sbjct: 349 IENSASQA---------ATYVVMPMRL 366 >gi|193069140|ref|ZP_03050097.1| DNA polymerase III, beta subunit [Escherichia coli E110019] gi|192957464|gb|EDV87910.1| DNA polymerase III, beta subunit [Escherichia coli E110019] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I +Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-SQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|300721091|ref|YP_003710359.1| DNA polymerase III subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297627576|emb|CBJ88095.1| DNA polymerase III, beta-subunit [Xenorhabdus nematophila ATCC 19061] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 130/387 (33%), Positives = 214/387 (55%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E E+ + Sbjct: 1 MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLETEMKARVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+F Sbjct: 61 QPHEQGATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDG Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 175 HRLAVCSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L + SSV Sbjct: 294 ANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVK 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + A YV+MPMR+ Sbjct: 349 IENSASQA---------ATYVVMPMRL 366 >gi|89092265|ref|ZP_01165219.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92] gi|89083353|gb|EAR62571.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92] Length = 367 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 216/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK + R +++ L ++ER+ T+PV ++LL A L + + E+E+ G + Sbjct: 1 MKFVISREALIKPLQLVAGVVERRQTLPVLSNILLVAEGDQLSMTGTDLEVELVGRVTLD 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA GS+TV A L DI + L D A+I G ++ I G S F L + P + Sbjct: 61 EPAE---AGSVTVPARKLMDICKSLPDSARIEL---TLTGQKMVIKAGRSRFTLSTLPAA 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP+ ++ + L+NL+++T F+MA +++RYYLNG+ I L+ +V+T Sbjct: 115 EFPNVEDSPETLELSMVQHQLRNLIDKTGFSMAQQDVRYYLNGMLLEIANGQLR--SVST 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA + D+ A+ IIVPRK + E+ R+L + + +++ + S I ++ + Sbjct: 173 DGHRLATSVTDVEAEDGMQHQIIVPRKGILELARLLQNGEEELRLVIGASHIRAHVGDFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ VIP + DK L + LRQ + R++I+S+ + + V+LSLSS L Sbjct: 233 FTSKLVDGKFPDYERVIPKNGDKILLSDRMELRQVLSRIAILSNEKYRGVRLSLSSGYLQ 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E++ V Y +++ FN YLL+ + ++S D V L SNSS Sbjct: 293 VMANNPEQEEAEETLAVDYEGETLEVGFNVNYLLDCLSILNS-----DVVRLTLSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G D++ + YV+MPMR+ Sbjct: 348 ALVEGFDEE---------GSVYVVMPMRM 367 >gi|324111598|gb|EGC05579.1| DNA polymerase III [Escherichia fergusonii B253] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 HPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|254225545|ref|ZP_04919154.1| DNA polymerase III, beta chain [Vibrio cholerae V51] gi|125621865|gb|EAZ50190.1| DNA polymerase III, beta chain [Vibrio cholerae V51] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + + V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|215489041|ref|YP_002331472.1| DNA polymerase III subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|312967889|ref|ZP_07782101.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75] gi|215267113|emb|CAS11560.1| DNA polymerase III, beta subunit [Escherichia coli O127:H6 str. E2348/69] gi|312287450|gb|EFR15358.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75] Length = 366 Score = 223 bits (567), Expect = 5e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPMRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|261346741|ref|ZP_05974385.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541] gi|282565141|gb|EFB70676.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541] Length = 366 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L++ + E+E+ +P + Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALQLTGTDLEMEMMANVPLT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I ++ + + G S F L + P ++FP Sbjct: 61 REHEVGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F + L+ V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI ++ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMDIGQELPSH-SVIVPRKGVIELMRLLDGGDAPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S+ V +F D+ +S + Sbjct: 295 NNPEQEEAEEIVDVSYQGGEMEIGFNVSYILDVLNTLKSENV----TLFLTDAVSS---V 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 348 QIEDSASR-------SAVYVVMPMRL 366 >gi|77358984|ref|YP_338559.1| DNA polymerase III subunit beta [Pseudoalteromonas haloplanktis TAC125] gi|76873895|emb|CAI85116.1| DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [Pseudoalteromonas haloplanktis TAC125] Length = 367 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 128/387 (33%), Positives = 220/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ ++ Sbjct: 1 MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLEIELVASVFVG 60 Query: 61 VDVCGS-ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 D+ + +T+ A L DI + L DG+ ++ +E++L ++ G S F L + +F Sbjct: 61 DDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEHQL----LLTSGKSRFSLTTLAAEDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDG Sbjct: 117 PNLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+A+ + + +I+PRK V EI+R++ + + V + + I + + + Sbjct: 175 HRLAIAQKQLKQSLNTQRQLIIPRKGVQEIMRLMVADEELVTIQFGANHIRIIDIEFTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 235 SKLVDGRFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V+F L SNSS Sbjct: 295 ANNPEQEQAEEVVEVGYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G + A YV+MPMR+ Sbjct: 350 IEGAGDEE---------AMYVVMPMRL 367 >gi|332304388|ref|YP_004432239.1| DNA polymerase III, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171717|gb|AEE20971.1| DNA polymerase III, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 367 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 222/386 (57%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R + L+ L +ER++T+P+ +VL++ +D L + + E+E+ + + Sbjct: 1 MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDNALWLTGTDLEVELISNVTLT 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G ITV A L DI+R L +G++ISF + G++ I G S + L + +++P Sbjct: 61 GELEEGEITVPAKKLLDIIRGLAEGSEISFHID---GSKAIIRCGRSKYSLSTLSATDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + FE++ S LK L++ HF+MA +++RYYLNG+ + ED + VATDGH Sbjct: 118 NLEDWQGELEFEISQSNLKRLIDSVHFSMAQQDVRYYLNGM--SLETEDNVIRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ +I+PRK V EI R++ D S+KV + + I + + Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+ A R SI+S+ + + V+L+LSS ++ +T Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A+E ++V Y ++I FN YL+++++ +++ +EV F L SNSS I Sbjct: 296 NNPEQEEAVEIVDVDYQGDDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MPMR+ Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367 >gi|261250638|ref|ZP_05943213.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891] gi|260939207|gb|EEX95194.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891] Length = 366 Score = 223 bits (567), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ LVE+T F+MA +++RYYLNG+ F I E L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEI--EGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSTSKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----ETVRISMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 350 ENAADDS---------AMYVVMPIRL 366 >gi|294638326|ref|ZP_06716579.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685] gi|291088579|gb|EFE21140.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685] Length = 366 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +++ L + + T+P+ ++LLQ DG L + + E+E+ +P S Sbjct: 1 MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L DGA+IS + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L ++ +++ + + + ++ + Sbjct: 176 RLAVCSMPI-GQSLPHHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + VV L + SSV I Sbjct: 295 NNPEQEEAEELLDVNYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ A YV+MPMR+ Sbjct: 350 --EDAASQ-------AAVYVVMPMRL 366 >gi|238750288|ref|ZP_04611790.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380] gi|238711521|gb|EEQ03737.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380] Length = 366 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + +EV L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EEVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D +S+ A YV+MPMR+ Sbjct: 350 --EDGNSQ-------AAAYVVMPMRL 366 >gi|170766918|ref|ZP_02901371.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627] gi|170124356|gb|EDS93287.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627] Length = 366 Score = 222 bits (566), Expect = 6e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|300719140|ref|YP_003743943.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661] gi|299064976|emb|CAX62096.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661] Length = 366 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ N+G L + + E+E+ + + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVNEGSLLLTGTDLEMEMVARVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +GA+I+ + E + + G S F L + P S+FP Sbjct: 61 QEHEPGATTVPARKFFDICRGLPEGAEITVMLDGE---RMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWTSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q+ S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPVGQQLPSH-SVIVPRKGVIELVRLLDGGDTPLQVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVTYGGTDMEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366 >gi|188535561|ref|YP_001909358.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99] gi|188030603|emb|CAO98498.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99] Length = 366 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 1 MKFTVERELLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A +DI R L +GA+I+ E E + + G S F L + P S+FP Sbjct: 61 QDHEPGATTVPARKFFDICRGLPEGAEIAVILEGE---RMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F ++L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGDELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L DS ++V + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELVRLLDGGDSLLQVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDASCDLLKQAFSRAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366 >gi|153212930|ref|ZP_01948524.1| DNA polymerase III, beta chain [Vibrio cholerae 1587] gi|229520185|ref|ZP_04409612.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80] gi|254291126|ref|ZP_04961923.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226] gi|124116156|gb|EAY34976.1| DNA polymerase III, beta chain [Vibrio cholerae 1587] gi|150422971|gb|EDN14921.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226] gi|229342779|gb|EEO07770.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80] Length = 366 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|260771048|ref|ZP_05879976.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972] gi|260613937|gb|EEX39128.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972] Length = 366 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS ++ L + + T+P+ ++LL+ D L + A+ E+E+ + Sbjct: 1 MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A DI R L D A I+ E G V + G S F L + P S+FP Sbjct: 61 GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ ++ A A IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNLRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + +K L+ C LRQA R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|152994045|ref|YP_001338880.1| DNA polymerase III subunit beta [Marinomonas sp. MWYL1] gi|150834969|gb|ABR68945.1| DNA polymerase III, beta subunit [Marinomonas sp. MWYL1] Length = 365 Score = 222 bits (566), Expect = 7e-56, Method: Compositional matrix adjust. Identities = 139/388 (35%), Positives = 218/388 (56%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L+ L ++ERK T+PV +VL++ D LL + S E+E+ G +P Sbjct: 1 MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQLLTLTGSDLEVELVGHVP-- 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D C G ITV A L DI + L D A I F +++ I G S F L + P EF Sbjct: 59 LDECEEGRITVPARKLMDICKSLPDSAVIEFTLDDQKAV---IRSGRSRFSLSTLPADEF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + + +A + ++ L++RT FAMA +++RYYLNG+ + D +L VATDG Sbjct: 116 PNIQDMQGDLTVSIAQNSVRRLIDRTGFAMANQDVRYYLNGMLLEV--ADGQLRVVATDG 173 Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRLA A D AQ++ + +IVPRK V E+ R+L+ D V++++ + I + Sbjct: 174 HRLATAVED--AQVSGDLTQVIVPRKGVLELNRLLNDTDEVVELTIGTNHIRAKVAEYVF 231 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG+FP+Y VIP +N+K + + LRQ R SI+S+ + + V+L LS+ L + Sbjct: 232 TSKLVDGKFPDYHRVIPRNNEKIVIADRLELRQVFLRASILSNEKYRGVRLILSNGMLQV 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +NP+ +A ES+ V Y M++ FN YLL+++ + S EV L+ SNSS Sbjct: 292 FANNPEQEEAEESVLVQYQGDNMEVGFNVGYLLDVLGVVDS-----QEVRLSLNDSNSSA 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + A YV+MPMR+ Sbjct: 347 LIEEAQSHA---------AQYVVMPMRL 365 >gi|238787827|ref|ZP_04631624.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641] gi|238724170|gb|EEQ15813.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641] Length = 366 Score = 222 bits (566), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D +S+ A YV+MPMR+ Sbjct: 350 --EDGNSQ-------AAAYVVMPMRL 366 >gi|242237462|ref|YP_002985643.1| DNA polymerase III subunit beta [Dickeya dadantii Ech703] gi|242129519|gb|ACS83821.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech703] Length = 366 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +FEL + LK L+E T F+MA +++RYYLNG+ F + + L+ VATDGH Sbjct: 118 NLDDWQSEVAFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGDGLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L ++ +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQPLPSHSVIVPRKGVMELVRLLDGGETPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFARAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V R+ ++ + + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEDV-------RMLLADPASSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QLEDCASQ-------AAAYVVMPMRL 366 >gi|167041927|gb|ABZ06665.1| putative DNA polymerase III beta subunit, N-terminal domain protein [uncultured marine microorganism HF4000_137B17] Length = 371 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 231/388 (59%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ T+ R+ L+ L HA IIE+K T+P+ ++L++A D + I A+ +I T IP Sbjct: 1 MEFTISRNTFLKSLSHAYGIIEKKTTLPILSNILIEAKDSKIRITATDLDIIYTEEIPLQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS T SA ++YDI+RKL+ ++ F ++ ++ + G+S F L FP Sbjct: 61 ELKKEGSTTTSASIIYDILRKLEPNTKVELFLQS--ANKLKLVSGNSKFNLLCLSPDNFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK-LCAVATD 177 E+ +FE++S+ + L+ +T +++ +E R+YLNGI+ H IN E+ L +V+TD Sbjct: 119 LADEDIKQKTFEISSNKMLKLLNKTKISISNDETRHYLNGIYLHKINIENKSFLSSVSTD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRL+ + ++I + SII+P+K + +++ +L S++K+S ++S+I I++ + Sbjct: 179 SHRLSSSRLEIDSN-TDFESIILPKKTIFQLISLLEQSTSAIKISNNKSKIKFEIDNGVL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 ++IDG FP+Y V+P N K L++ + +++RV+ +SS R + +K+ +S D L + Sbjct: 238 ISKVIDGRFPDYSKVVPIDNVKILQIKLNEFKNSIERVTTVSSDRKEGLKMKISKDFLQL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V++P+ G+ IES+N +N MDI FN +YL++I + ++ +D ++ L + S V Sbjct: 298 SVNSPNSGEGIESINAIFNSDDMDISFNSRYLIDI-----ASQIENDLIIINLKDAASPV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I KD K N+F+V+MPM+I Sbjct: 353 LI--KDMSDK-------NSFHVVMPMKI 371 >gi|58579625|ref|YP_198641.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621659|ref|YP_449031.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574272|ref|YP_001911201.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424219|gb|AAW73256.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365599|dbj|BAE66757.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518724|gb|ACD56669.1| DNA polymerase III, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 366 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 219/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ A Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMIARTMAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DVQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+LR+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELLRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|254507273|ref|ZP_05119409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16] gi|219549733|gb|EED26722.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16] Length = 366 Score = 222 bits (565), Expect = 8e-56, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGH Sbjct: 118 NIEDWQSEVEISLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTALGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS A YV+MP+R+ Sbjct: 350 ENAEDDS---------AMYVVMPIRL 366 >gi|21326650|gb|AAL30090.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris] Length = 366 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 127/385 (32%), Positives = 219/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q N+G L + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTV---SQTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + E ++ + IIVPRK V E+LR+L + D V++ L S I + ++ + + Sbjct: 176 LPLCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|304398067|ref|ZP_07379942.1| DNA polymerase III, beta subunit [Pantoea sp. aB] gi|304354353|gb|EFM18725.1| DNA polymerase III, beta subunit [Pantoea sp. aB] Length = 366 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS TV A DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 61 QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L D+ ++V + S I ++ + Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVRIGGSNIRAHVGDYIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YV+MPMR+ Sbjct: 348 QIEDVASP-------AAAYVVMPMRL 366 >gi|296100373|ref|YP_003610519.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054832|gb|ADF59570.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPIGDSLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C +L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|30065009|ref|NP_839180.1| DNA polymerase III subunit beta [Shigella flexneri 2a str. 2457T] gi|56480410|ref|NP_709499.2| DNA polymerase III subunit beta [Shigella flexneri 2a str. 301] gi|110807609|ref|YP_691129.1| DNA polymerase III subunit beta [Shigella flexneri 5 str. 8401] gi|30043270|gb|AAP18991.1| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 2457T] gi|56383961|gb|AAN45206.2| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 301] gi|110617157|gb|ABF05824.1| DNA polymerase III, beta-subunit [Shigella flexneri 5 str. 8401] gi|281603072|gb|ADA76056.1| DNA polymerase III, beta-subunit [Shigella flexneri 2002017] gi|313647709|gb|EFS12157.1| DNA polymerase III, beta subunit [Shigella flexneri 2a str. 2457T] gi|332750522|gb|EGJ80931.1| DNA polymerase III, beta subunit [Shigella flexneri K-671] gi|332750693|gb|EGJ81101.1| DNA polymerase III, beta subunit [Shigella flexneri 4343-70] gi|332751746|gb|EGJ82144.1| DNA polymerase III, beta subunit [Shigella flexneri 2747-71] gi|332764072|gb|EGJ94309.1| DNA polymerase III, beta subunit [Shigella flexneri 2930-71] gi|332996041|gb|EGK15668.1| DNA polymerase III, beta subunit [Shigella flexneri VA-6] gi|332997108|gb|EGK16724.1| DNA polymerase III, beta subunit [Shigella flexneri K-218] gi|333013256|gb|EGK32629.1| DNA polymerase III, beta subunit [Shigella flexneri K-304] Length = 366 Score = 222 bits (565), Expect = 9e-56, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|109896334|ref|YP_659589.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c] gi|109698615|gb|ABG38535.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c] Length = 367 Score = 222 bits (565), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 125/386 (32%), Positives = 220/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R + L+ L +ER++T+P+ +VL++ +D L + + E+E+ + + Sbjct: 1 MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDSALWLTGTDLEVELISNVTLT 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G ITV A L DI+R L +G++ISF + G + + G S + L + +++P Sbjct: 61 GDFEEGEITVPAKKLLDIIRGLTEGSEISFHVD---GNKAILRCGRSKYSLSTLSANDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + FE++ + LK L++ HF+MA +++RYYLNG+ + ED + VATDGH Sbjct: 118 NLEDWQGELEFEISQANLKRLIDSVHFSMAQQDVRYYLNGM--SLETEDNVIRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ +I+PRK V EI R++ D S+KV + + I + + Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+ A R SI+S+ + + V+L+LSS ++ +T Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A+E ++V Y ++I FN YL+++++ +++ +EV F L SNSS I Sbjct: 296 NNPEQEEAVEIVDVDYQGGDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MPMR+ Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367 >gi|311277334|ref|YP_003939565.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1] gi|308746529|gb|ADO46281.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1] Length = 366 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F +A + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTVAQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCAMPIGETLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|293393722|ref|ZP_06638030.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera DSM 4582] gi|291423766|gb|EFE96987.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera DSM 4582] Length = 366 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + E + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEITVQLDGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPIGQQLPSH-SVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVIYEGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D SK +A YV+MPMR+ Sbjct: 348 QIEDGASK-------SAAYVVMPMRL 366 >gi|197262814|ref|ZP_03162888.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241069|gb|EDY23689.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 366 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ NA YV+MPMR+ Sbjct: 350 --EDAASQ-------NAAYVVMPMRL 366 >gi|238765485|ref|ZP_04626404.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638] gi|238696309|gb|EEP89107.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638] Length = 366 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GAQI+ + G + + G S F L + P ++FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAQITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ A YV+MPMR+ Sbjct: 350 --EDGASQ-------AAAYVVMPMRL 366 >gi|332997867|gb|EGK17475.1| DNA polymerase III, beta subunit [Shigella flexneri K-272] gi|333013662|gb|EGK33027.1| DNA polymerase III, beta subunit [Shigella flexneri K-227] Length = 366 Score = 221 bits (564), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 HPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|325922760|ref|ZP_08184494.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325546756|gb|EGD17876.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 366 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 126/385 (32%), Positives = 219/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+LR+L + D V++ + S I + ++ + + Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|297581953|ref|ZP_06943873.1| DNA polymerase subunit III [Vibrio cholerae RC385] gi|297533820|gb|EFH72661.1| DNA polymerase subunit III [Vibrio cholerae RC385] Length = 366 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGGLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|117619320|ref|YP_854529.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560727|gb|ABK37675.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R +L L + + T+P+ +VLL ++GLL + + E+E+ G + + Sbjct: 1 MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DI R L +GA I E G + I G S F L + P +E+P Sbjct: 61 SDSQDGRTTVPARKLLDICRGLPEGADIRLNTE---GERLIIRSGRSRFNLSTLPATEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E V F++ LK L++ T F+MA++++RYYLNG+ F E L VATDGH Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFE--SEGHGLRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++V + +I+PRK V E++R+L ++D V++ + S + ++ + Sbjct: 176 RLATCRREVVTESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+++ VIP ++DK L +LRQA R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + D++ L S SS I Sbjct: 296 NNPEQEEAEELLDVQYEAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D DS+ +A YV+MPMRI Sbjct: 351 --EDFDSQ-------DAQYVVMPMRI 367 >gi|153827733|ref|ZP_01980400.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2] gi|229515948|ref|ZP_04405405.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21] gi|149737791|gb|EDM52696.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2] gi|229347048|gb|EEO12010.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21] Length = 366 Score = 221 bits (563), Expect = 1e-55, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D S A YV+MP+R+ Sbjct: 350 ENVDDGS---------AMYVVMPIRL 366 >gi|121998016|ref|YP_001002803.1| DNA polymerase III subunit beta [Halorhodospira halophila SL1] gi|121589421|gb|ABM62001.1| DNA polymerase III, beta subunit [Halorhodospira halophila SL1] Length = 366 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/385 (32%), Positives = 208/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V+R +L L ++ER+ T+PV ++ ++A L++ A+ E+E+ + A+ Sbjct: 1 MRFEVQREPLLAALQSIVGVVERRQTLPVLGNIRVEARSQQLQLTATDLEVELVAYLEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A DI R L +GA IS + T + S F L + P EFP Sbjct: 61 TKDEGVITLPARKWLDICRNLPEGASISIEANQDRAT---LRAASSRFSLATLPADEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + E+ L+ L+ERTHF+MA ++RYYLNG+ + + AVATDGHR Sbjct: 118 VESIGDTEAVEIPRGELRRLIERTHFSMAQHDVRYYLNGLLLELTGSGAR--AVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AE D Q+A+ +IVPRK V E+LR+L D + + + + ++S+ ++ + Sbjct: 176 LALAESDSPVQVAQPRQVIVPRKGVQELLRLLDDADEPATLEFGTNHVRVTLQSVRLTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y VIP DK + ++ LRQA+ RV+I+S+ + + ++ ++ D L + Sbjct: 236 LIDGVFPDYNRVIPQDGDKHVLIDRQYLRQALTRVAILSNEKYRGIRFAVEGDTLRIGSH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + Y +++ FN YLL+ + + + + V L ++SS IR Sbjct: 296 NPEQEEAEEELGIEYGGEAVELGFNANYLLDALGALDT-----ERVQVTLTDASSSGLIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + D NA YV+MPMR+ Sbjct: 351 AEGSD---------NARYVVMPMRL 366 >gi|88705399|ref|ZP_01103110.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71] gi|88700489|gb|EAQ97597.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71] Length = 367 Score = 221 bits (563), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V R +L+ L ++ER+ T+PV +VLL + L I + E+E+ G + Sbjct: 1 MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L DI + L DGA + + T + G S F L + P EFP Sbjct: 61 TAGEAGEITVPARKLADICKSLPDGADLEIAVADGKAT---VRSGRSRFTLATLPAREFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L L+ L+ERT FAMA +++RYYLNG+++ + L+ AVATDGH Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAGRLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +I+PRK V E+ R++ S D V + L + + + + Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQSDDEDVTIILGSNHLRATTAEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P + DK ++ + T LRQA R +I+S+ + + V+L LS L + Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSEGSLEIVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A ES+ V Y+ ++I FN YLL+++ +S +++ F L NSS + Sbjct: 296 NNPEQEQAEESLPVDYSGDALEIGFNVGYLLDVLGVLSG-----EKIRFSLSDPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 351 EETDGG---------DSLYVVMPMRL 367 >gi|238917985|ref|YP_002931499.1| DNA polymerase III subunit beta [Edwardsiella ictaluri 93-146] gi|269137360|ref|YP_003294060.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202] gi|238867553|gb|ACR67264.1| DNA polymerase III, beta subunit, putative [Edwardsiella ictaluri 93-146] gi|267983020|gb|ACY82849.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202] gi|304557461|gb|ADM40125.1| DNA polymerase III beta subunit [Edwardsiella tarda FL6-60] Length = 366 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +++ L + + T+P+ ++LLQ DG L + + E+E+ +P Sbjct: 1 MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L DGA+IS + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L ++ +++ + + + ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + VV L + SSV I Sbjct: 295 NNPEQEEAEELLDVDYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ A YV+MPMR+ Sbjct: 350 --EDAASQ-------AAVYVVMPMRL 366 >gi|254515868|ref|ZP_05127928.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3] gi|219675590|gb|EED31956.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3] Length = 367 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 210/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V R +L+ L ++ER+ T+PV +VLL + L I + E+E+ G + Sbjct: 1 MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S G IT+ A L DI + L DGA + + T + G S F L + P EFP Sbjct: 61 SEGDAGEITLPARKLADICKSLPDGADLEISVSDGKAT---VRSGRSRFTLATLPAREFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L L+ L+ERT FAMA +++RYYLNG+++ + L+ AVATDGH Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAGRLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +I+PRK V E+ R++ + D V + L + + + + Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQNDDEDVTIILGSNHLRATTTEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P + DK ++ + T LRQA R +I+S+ + + V+L LS+ L + Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSNGSLEIVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ V Y+ ++I FN YLL+++ +S DE+ F L NSS + Sbjct: 296 NNPEQEQAEENLPVNYSGDSLEIGFNVGYLLDVLGVLSG-----DEIRFSLSDPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 351 EETDGG---------DSLYVVMPMRL 367 >gi|317046240|ref|YP_004113888.1| DNA polymerase III subunit beta [Pantoea sp. At-9b] gi|316947857|gb|ADU67332.1| DNA polymerase III, beta subunit [Pantoea sp. At-9b] Length = 366 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ N+G L + + E+E+ + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 61 QPHEPGATTVPARKFLDICRGLPDGAEITLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L ++ ++V + S I ++ + Sbjct: 176 RLAVCSMPI-GQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V++ ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVSYNGSELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YV+MPMR+ Sbjct: 348 QIEDVASP-------AAAYVVMPMRL 366 >gi|152972608|ref|YP_001337754.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897211|ref|YP_002921959.1| DNA polymerase III subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|262040465|ref|ZP_06013708.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005214|ref|ZP_08305173.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3] gi|150957457|gb|ABR79487.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549541|dbj|BAH65892.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042218|gb|EEW43246.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536346|gb|EGF62708.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3] Length = 366 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|283787599|ref|YP_003367464.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168] gi|282951053|emb|CBG90731.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168] Length = 366 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QAHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ + V + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELMRMLDGGDNPLHVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|258622959|ref|ZP_05717974.1| DNA polymerase III, beta chain [Vibrio mimicus VM573] gi|258626083|ref|ZP_05720934.1| DNA polymerase III, beta chain [Vibrio mimicus VM603] gi|262172779|ref|ZP_06040457.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451] gi|258581609|gb|EEW06507.1| DNA polymerase III, beta chain [Vibrio mimicus VM603] gi|258584742|gb|EEW09476.1| DNA polymerase III, beta chain [Vibrio mimicus VM573] gi|261893855|gb|EEY39841.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451] Length = 366 Score = 221 bits (562), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + + V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|308188764|ref|YP_003932895.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1] gi|308059274|gb|ADO11446.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1] Length = 384 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 19 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 78 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS TV A DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 79 QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 135 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 136 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 193 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L ++ ++V + S I ++ + Sbjct: 194 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGENPLQVQIGGSNIRAHVGDYIFTS 252 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 253 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 312 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN Y+L++++ + + V RL ++S + Sbjct: 313 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 365 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YV+MPMR+ Sbjct: 366 QIEDVASP-------AAAYVVMPMRL 384 >gi|315125113|ref|YP_004067116.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913] gi|315013626|gb|ADT66964.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913] Length = 367 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 218/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ ++ Sbjct: 1 MQITISREQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVASVFVG 60 Query: 61 VDVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV + +T+ A L DI + L DG+ ++ ++ ++ ++ G S F L + +FP Sbjct: 61 DDVADTKLTLPAKKLLDICKSLPDGSDLTLSLQDH---QLLLTSGKSRFSLTTLAAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDGH Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I+PRK V EI+R++ + V + + I + + + Sbjct: 176 RLAIAQKQLGQSLNTQRQLIIPRKGVQEIMRLMVADQELVTIQFGANHIRIIDIEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V+F L SNSS I Sbjct: 296 NNPEQEQAEEVVEVMYEGDDLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G + A YV+MPMR+ Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367 >gi|50123358|ref|YP_052525.1| DNA polymerase III subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49613884|emb|CAG77336.1| DNA polymerase III, beta chain [Pectobacterium atrosepticum SCRI1043] Length = 366 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++L+Q +G L + + E+E+ + Sbjct: 1 MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F EDL+ VATDGH Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L L ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKCEGV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDSASR-------AAAYVVMPMRL 366 >gi|270264120|ref|ZP_06192387.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13] gi|270041769|gb|EFA14866.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13] Length = 366 Score = 220 bits (561), Expect = 2e-55, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E+E + + G S F L + P +FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEIAVTLESE---RMLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPIGQQLPSH-SVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366 >gi|85057980|ref|YP_453682.1| DNA polymerase III subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84778500|dbj|BAE73277.1| DNA polymerase III beta subunit protein DnaN [Sodalis glossinidius str. 'morsitans'] Length = 366 Score = 220 bits (561), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 133/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ ++ L + + E+E+ + S Sbjct: 1 MKFIVEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVSEDRLLLTGTDLEMEMVAQVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + I G S + L + P S FP Sbjct: 61 AAHEPGATTVPARKFFDICRGLPEGAEIAVTLE---GERMLIRSGRSRYSLSTLPASNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L+ S+LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V + S+IVPRK V E++R+L ++ VK+ + + I ++ + Sbjct: 176 RLAVCAMS-VGEALPSHSVIVPRKGVMELVRMLDGGENPVKLQIGSNNIRASVGDYIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L LS+++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDVLKQAFARAAILSNEKFRGVRLYLSANQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L SSV I Sbjct: 295 NNPEQEEAEEILDVTYQGSEMEIGFNVSYVLDVLNALKC-----EEVRLLLTDGVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DS + A YV+MPMR+ Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366 >gi|206578911|ref|YP_002235887.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342] gi|288932894|ref|YP_003436953.1| DNA polymerase III subunit beta [Klebsiella variicola At-22] gi|290511690|ref|ZP_06551058.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55] gi|206567969|gb|ACI09745.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342] gi|288887623|gb|ADC55941.1| DNA polymerase III, beta subunit [Klebsiella variicola At-22] gi|289775480|gb|EFD83480.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55] Length = 366 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|294627437|ref|ZP_06706021.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598258|gb|EFF42411.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 366 Score = 220 bits (560), Expect = 3e-55, Method: Compositional matrix adjust. Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEIELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEAETKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|220933195|ref|YP_002512094.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219994505|gb|ACL71107.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 366 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 205/385 (53%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R D+L+ L +ER+ T+P+ +VL++A++ L + + E+E+ Sbjct: 1 MRFSIQREDLLKPLQQVIGAVERRQTMPILANVLIKADEDRLSVTGTDLEVELVAEASEV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TV A L DI R L D A + E G V I+ G + F L + P ++FP+ Sbjct: 61 SASPGEATVPARKLLDICRALPDEASLEIQAE---GDRVLITSGRARFTLSALPAADFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L L++L+ RT FAMA +++RYYLNG+ + + ++ VATDGHR Sbjct: 118 LDEISSSKELTLTERELRHLILRTSFAMANQDVRYYLNGLMLEVGQNVIR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E++ A +I+PRK V E+LR+L D V++ + + I + L + + Sbjct: 176 LALCELNTTVDTASSQQVIIPRKGVQELLRLLEDSDEPVRLQIGANHIRATLPRLRFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y VIP D+ ++V LR+A+ R SI+S+ + + ++L L L + Sbjct: 236 LIDGRFPDYDRVIPKDGDQVMKVEREALRKALARASILSNEKYRGIRLVLGDGLLRIQAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A + + Y M+I FN YLL++++ + D + E F+ +NSSV +R Sbjct: 296 NPEQEEAEDEIEAQYTGTAMEIGFNVTYLLDVLNTVEGDVI---EATFK--DANSSVLMR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 351 DP---------GATDALYVVMPMRL 366 >gi|123444341|ref|YP_001008306.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163520|ref|YP_004300097.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122091302|emb|CAL14188.1| DNA polymerase III, beta subunit protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318608024|emb|CBY29522.1| DNA polymerase III beta subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667750|gb|ADZ44394.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 366 Score = 220 bits (560), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ A YV+MPMR+ Sbjct: 350 --EDGASQ-------AAAYVVMPMRL 366 >gi|195546611|ref|YP_002117639.1| p081 [Rhizobium phage 16-3] gi|102642576|gb|ABF71357.1| p081 [Rhizobium phage 16-3] Length = 378 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 132/386 (34%), Positives = 208/386 (53%), Gaps = 30/386 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R+ + +L + R++E +NTIP+ + L A DG L + + +I T A Sbjct: 21 MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDIVATDTAAAD 80 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++ V A LL DI +K G +S ++ ++ + G S F L + P ++FP Sbjct: 81 VTEGGAVCVDAKLLSDIAKKT--GGDVSLSEDK---GQLIVKSGRSRFSLPALPAADFPD 135 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATDGH 179 EY SF++ L L FA++TEE R+YLNGIF H++E+ D + AVATDGH Sbjct: 136 LSGGEYTASFDMD---LAALFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGH 192 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ + + A +IVPRK VG + + +V+VS+SE++I + ++ Sbjct: 193 RLSRHQAAYPGEDA-FKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTS 245 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+YQ VIP NDK++ ++RQA RVS++SS R +AVKLS + + + V Sbjct: 246 KLIDGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAV 305 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G A + + V Y+ P+DI FN YL E++ + ++ + D + SVF Sbjct: 306 SSPETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPAGDI----TLALADGGSPSVF- 360 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + VLMPMR+ Sbjct: 361 ---------TSEKAPELLAVLMPMRV 377 >gi|283836134|ref|ZP_06355875.1| hypothetical protein CIT292_10555 [Citrobacter youngae ATCC 29220] gi|291068323|gb|EFE06432.1| DNA polymerase III, beta subunit [Citrobacter youngae ATCC 29220] Length = 366 Score = 219 bits (559), Expect = 4e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMP-VGQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|237729023|ref|ZP_04559504.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2] gi|226909645|gb|EEH95563.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2] Length = 366 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMP-VGQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|157144343|ref|YP_001451662.1| DNA polymerase III subunit beta [Citrobacter koseri ATCC BAA-895] gi|157081548|gb|ABV11226.1| hypothetical protein CKO_00047 [Citrobacter koseri ATCC BAA-895] Length = 366 Score = 219 bits (559), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYGGTEMEIGFNVSYVLDVLNALKC-----ETVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|16762488|ref|NP_458105.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143976|ref|NP_807318.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415710|ref|YP_152785.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182325|ref|YP_218742.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505632|ref|YP_001572744.1| DNA polymerase III subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616955|ref|YP_001590920.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548873|ref|ZP_02342632.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233392|ref|ZP_02658450.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168260378|ref|ZP_02682351.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464832|ref|ZP_02698724.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818303|ref|ZP_02830303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471413|ref|ZP_03077397.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251713|ref|YP_002148775.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364638|ref|YP_002144275.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245644|ref|YP_002217787.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204928586|ref|ZP_03219785.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354576|ref|YP_002228377.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859063|ref|YP_002245714.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213648785|ref|ZP_03378838.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865135|ref|ZP_03387254.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585636|ref|YP_002639435.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913090|ref|ZP_04656927.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826404|ref|ZP_06545516.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288590|pir||AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504793|emb|CAD03158.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29139612|gb|AAO71178.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129967|gb|AAV79473.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129958|gb|AAX67661.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866979|gb|ABX23602.1| hypothetical protein SARI_03808 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366319|gb|ABX70087.1| hypothetical protein SPAB_04776 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194457777|gb|EDX46616.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195632425|gb|EDX50909.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096115|emb|CAR61711.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215416|gb|ACH52813.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197940160|gb|ACH77493.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204322019|gb|EDZ07217.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274357|emb|CAR39382.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325570|gb|EDZ13409.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332539|gb|EDZ19303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344390|gb|EDZ31154.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350419|gb|EDZ37050.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710866|emb|CAR35230.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470164|gb|ACN47994.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088258|emb|CBY98020.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617250|gb|EFY14155.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619062|gb|EFY15948.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625129|gb|EFY21957.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630180|gb|EFY26951.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634394|gb|EFY31128.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635279|gb|EFY31994.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642897|gb|EFY39481.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647623|gb|EFY44110.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650571|gb|EFY46978.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656403|gb|EFY52695.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661583|gb|EFY57806.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661664|gb|EFY57883.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668222|gb|EFY64380.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672849|gb|EFY68957.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674970|gb|EFY71056.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683660|gb|EFY79673.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687736|gb|EFY83705.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716816|gb|EFZ08387.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192049|gb|EFZ77284.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200531|gb|EFZ85609.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204957|gb|EFZ89942.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206700|gb|EFZ91657.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211772|gb|EFZ96605.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218634|gb|EGA03341.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220035|gb|EGA04505.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224805|gb|EGA09070.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232486|gb|EGA16588.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235261|gb|EGA19346.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241049|gb|EGA25086.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241401|gb|EGA25433.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248632|gb|EGA32562.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252069|gb|EGA35929.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258627|gb|EGA42290.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262342|gb|EGA45900.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268178|gb|EGA51654.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270592|gb|EGA54037.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625573|gb|EGE31918.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629712|gb|EGE36055.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 366 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|238793144|ref|ZP_04636772.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909] gi|238727517|gb|EEQ19043.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909] Length = 366 Score = 219 bits (558), Expect = 5e-55, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 NPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366 >gi|16767122|ref|NP_462737.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992431|ref|ZP_02573529.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242057|ref|ZP_02666989.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444384|ref|YP_002043087.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449346|ref|YP_002047870.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387477|ref|ZP_03214089.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|3915668|sp|P26464|DPO3B_SALTY RecName: Full=DNA polymerase III subunit beta gi|2653647|gb|AAB87631.1| DNA polymerase III beta clamp subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16422411|gb|AAL22696.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194403047|gb|ACF63269.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407650|gb|ACF67869.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604575|gb|EDZ03120.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329442|gb|EDZ16206.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338833|gb|EDZ25597.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248978|emb|CBG26835.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996123|gb|ACY91008.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160370|emb|CBW19895.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914967|dbj|BAJ38941.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225555|gb|EFX50610.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132198|gb|ADX19628.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990687|gb|AEF09670.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 366 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|253987485|ref|YP_003038841.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778935|emb|CAQ82095.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica] Length = 366 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 218/387 (56%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ + L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMMARVTLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 + G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++F Sbjct: 61 LPHEEGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDG Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 175 HRLAVCSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L + SSV Sbjct: 294 ANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQ 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D ++ NA YV+MPMR+ Sbjct: 349 I----EDCASH-----NAAYVVMPMRL 366 >gi|329894831|ref|ZP_08270631.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088] gi|328922725|gb|EGG30059.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088] Length = 375 Score = 219 bits (558), Expect = 6e-55, Method: Compositional matrix adjust. Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 26/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK ++ER +++ L ++ER+ T+P+ +VL+ L + + E+E+TG + Sbjct: 1 MKFSIEREALVKPLSLVAGVVERRQTLPILANVLVNVEGSQLSLVGTDLEVELTGRVTLE 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 S V GS+TV L+DI + L DG+ I ++ G ++ + G S F L + P +EF Sbjct: 61 DSDSVSGSVTVPGRKLFDICKSLPDGSVIELAQD---GAKLVVKSGRSRFSLATLPATEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P S + LK L+E+T FAMA +++RYYLNG+ + +N ++ VATDG Sbjct: 118 PLVDSLNVRGSMTVDQQALKALIEQTGFAMAQQDVRYYLNGMLWELNANQFRV--VATDG 175 Query: 179 HRLAVAEV---DIVAQIAKMP---SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 HRLA + + + V Q P II+PRK V E+ R+L D+ +V+L ++ + + Sbjct: 176 HRLATSHIVLSEGVVQGLSGPDATQIILPRKGVLELSRLLQPGDAPAEVALGDNHLKVET 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 S + +L+DG+FP+YQ V+P ++ K + L+ A+ R +I+S+ + + ++L LSS Sbjct: 236 ASFTFISKLVDGKFPDYQRVLPKNSTKTVVGERDVLKSALSRAAILSNEKYRGIRLHLSS 295 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D+L + +NP+ +A E ++V Y P++I FN YLL+++ I +D V L Sbjct: 296 DQLQVVANNPEQEEAEEIISVDYQGEPLEIGFNVSYLLDVLGVIH-----EDSVKVSLSD 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S + D+ + NA YV+MPMR+ Sbjct: 351 PSGSALLEAADEHA--------NAMYVVMPMRL 375 >gi|37678196|ref|NP_932805.1| DNA polymerase III subunit beta [Vibrio vulnificus YJ016] gi|37196935|dbj|BAC92776.1| DNA polymerase III, beta chain [Vibrio vulnificus YJ016] Length = 366 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + + T+P+ ++L+ +G L + A+ E+E+ + Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAPLSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S + Sbjct: 295 NNPEQEEAEEMLDVSFDGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|323462780|pdb|2XUR|A Chain A, The G157c Mutation In The Escherichia Coli Sliding Clamp Specifically Affects Initiation Of Replication gi|323462781|pdb|2XUR|B Chain B, The G157c Mutation In The Escherichia Coli Sliding Clamp Specifically Affects Initiation Of Replication Length = 373 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 8 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 67 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 68 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 124 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLN + F E+L+ VATDGH Sbjct: 125 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNCMLFETEGEELR--TVATDGH 182 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 183 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 241 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 242 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 301 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 302 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 356 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 357 --EDAASQ-------SAAYVVMPMRL 373 >gi|168235477|ref|ZP_02660535.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738233|ref|YP_002116781.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713735|gb|ACF92956.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291529|gb|EDY30881.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 366 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGMEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|307543591|ref|YP_003896070.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581] gi|307215615|emb|CBV40885.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581] Length = 367 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 204/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +L L ++ER+ T+PV +VL+Q + + + E+E+ G AS Sbjct: 1 MKFSISREALLRPLTLVAGVVERRQTLPVLSNVLIQVEQDQVSLTGTDLEVELIGRTVAS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD GS TV A L DI + L D A+I E+ + G S F L + P +EFP Sbjct: 61 QVDEAGSATVPARKLMDICKSLPDQAEIQLALEDNRAV---LRSGRSRFTLSTLPVAEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L LK L++ T FAMA +++RYYLNG+ ++ AVATDGH Sbjct: 118 NIEDGQSSVELSLPRGTLKRLIDATSFAMAQQDVRYYLNGMLLEFGTNLVR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAVA Q+ +IVPRK + E++R+L + V ++L + I + + + Sbjct: 176 RLAVASRSAEIQVEPSQKLIVPRKGIMELVRLLDDGEDPVSLTLGSTHIRAHTGDFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK L T LRQ + R +I+S+ + + V+L+L L + Sbjct: 236 KLVDGKFPDYERVVPKGGDKVLIAERTELRQVLSRTAILSNEKYRGVRLNLEEGNLRVMA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ V Y M+I FN YL++++ + +D V L NSS + Sbjct: 296 NNPEQEEAEENVGVEYTGPAMEIGFNVGYLVDVLSVLD-----EDRVQLTLADPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 351 ---------EEPGGGDALYVVMPMRL 367 >gi|227113115|ref|ZP_03826771.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328544|ref|ZP_03832568.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261819372|ref|YP_003257478.1| DNA polymerase III subunit beta [Pectobacterium wasabiae WPP163] gi|261603385|gb|ACX85871.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae WPP163] Length = 366 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 125/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++L+Q +G L + + E+E+ + Sbjct: 1 MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L L ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKCEGV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDSASR-------AAAYVVMPMRL 366 >gi|238759585|ref|ZP_04620747.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236] gi|238702244|gb|EEP94799.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236] Length = 366 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DS + A YV+MPMR+ Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366 >gi|238783049|ref|ZP_04627076.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970] gi|238716050|gb|EEQ08035.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970] Length = 366 Score = 219 bits (557), Expect = 7e-55, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366 >gi|221135256|ref|ZP_03561559.1| DNA polymerase III, beta subunit [Glaciecola sp. HTCC2999] Length = 368 Score = 219 bits (557), Expect = 8e-55, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 220/387 (56%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R L+ L IER++T+P+ ++LL +G+L + + E+E+ + + Sbjct: 1 MKFTISREQFLQPLQLVSGAIERRHTLPILSNILLVVKEGVLTLTGTDLEVELISHLSLA 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D G ITV A L DI R L DG I+F + GT+ I G + L + S++ Sbjct: 61 ADSYEDGEITVPAKKLVDICRGLSDGNDITFQVD---GTKATIRSGRGRYTLSTLSASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + F ++ + LK+L++ T FAMA +++RYYLNG+ + ED + VATDG Sbjct: 118 PNLEDWQADVEFVISQNDLKHLIDSTSFAMAQQDVRYYLNGM--SLETEDNNIRTVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + + +I+PRK V EI R++ + D+SVKV + + I + + Sbjct: 176 HRLALCNLAYTTETLPVRQVIIPRKGVLEINRLIEANDNSVKVKIGSNHISVKSSGFVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+++ V+P K + N +++A R SI+S+ + + V+L+LS+ +L +T Sbjct: 236 SKLVDGRFPDHRRVLPKETTKAVTANKDVMKKAFSRASILSNEKFRGVRLNLSNGELKIT 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y ++I FN YL+++++ + + DEV F L S++S Sbjct: 296 ANNPEQEEAEEIVDVNYQGEELEIGFNVAYLIDVMNALKT-----DEVKFNLSDSSASAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D+ N+ A YV+MPMR+ Sbjct: 351 I----EDATNS-----TALYVIMPMRL 368 >gi|295095339|emb|CBK84429.1| DNA polymerase III, beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 366 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPIGDSLPNH-SVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|289662283|ref|ZP_06483864.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667648|ref|ZP_06488723.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 366 Score = 218 bits (556), Expect = 9e-55, Method: Compositional matrix adjust. Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|261341639|ref|ZP_05969497.1| hypothetical protein ENTCAN_08107 [Enterobacter cancerogenus ATCC 35316] gi|288315996|gb|EFC54934.1| DNA polymerase III, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPIGDSLPNH-SVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|21240776|ref|NP_640358.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|78045558|ref|YP_361733.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926218|ref|ZP_08187576.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118] gi|21106040|gb|AAM34894.1| DNA polymerase III beta chain [Xanthomonas axonopodis pv. citri str. 306] gi|78033988|emb|CAJ21633.1| DNA polymerase III beta chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543400|gb|EGD14825.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118] Length = 366 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|238797844|ref|ZP_04641336.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969] gi|238718260|gb|EEQ10084.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969] Length = 366 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSDVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366 >gi|146309669|ref|YP_001174743.1| DNA polymerase III subunit beta [Enterobacter sp. 638] gi|145316545|gb|ABP58692.1| DNA polymerase III, beta subunit [Enterobacter sp. 638] Length = 366 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P +FP Sbjct: 61 QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRILVRSGRSRFSLSTLPAIDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPIGVTLPNH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|163802134|ref|ZP_02196029.1| DNA polymerase III subunit beta [Vibrio sp. AND4] gi|159173939|gb|EDP58749.1| DNA polymerase III subunit beta [Vibrio sp. AND4] Length = 366 Score = 218 bits (556), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSSRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L S L++LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQSDLRSLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK + E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGIQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + D+V + +N+S I Sbjct: 295 NNPEQEEAEEILDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DKVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|330827702|ref|YP_004390654.1| DNA polymerase III subunit beta [Aeromonas veronii B565] gi|328802838|gb|AEB48037.1| DNA polymerase III, beta subunit [Aeromonas veronii B565] Length = 367 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 130/388 (33%), Positives = 219/388 (56%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + R +L L + + T+P+ +VLL ++GLL + + E+E+ G + Sbjct: 1 MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 AS D G TV A L DI R L +GA+I E G + I G S F L + P +E Sbjct: 61 GASED--GRTTVPARKLLDICRGLPEGAEIRLNTE---GERLIIRSGRSRFNLSTLPATE 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ ++ E V F+++ LK L++ T F+MA++++RYYLNG+ F E L VATD Sbjct: 116 YPNIEDWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFE--SEGHGLRTVATD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA ++V + +I+PRK V E++R+L ++D V++ + S + ++ Sbjct: 174 GHRLATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG FP+++ VIP ++DK L +LRQA R +I+S+ + + V+L+L + L + Sbjct: 234 TSKLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M+I FN Y+L++++ + D++ L S SS Sbjct: 294 TANNPEQEEAEELLDVQYAAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D ++ +A YV+MPMRI Sbjct: 349 II----EDFEHQ-----DAQYVVMPMRI 367 >gi|212712613|ref|ZP_03320741.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM 30120] gi|212684829|gb|EEB44357.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM 30120] Length = 366 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LL +G L++ + E+E+ +P + Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLHVKEGALQLTGTDLEMEMMANVPLT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I ++ + + G S F L + P ++FP Sbjct: 61 REHEIGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F E L V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFET--EGNMLRTVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI ++ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMDIGQELPSH-SVIVPRKGVMELMRLLDGGDALLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S+ V +F D+ +S + Sbjct: 295 NNPEQEEAEEIVDVNYQGGEMEIGFNVSYILDVLNALKSENV----TLFLTDAVSS---V 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 348 QIEDSASR-------SAVYVVMPMRL 366 >gi|54307246|ref|YP_128266.1| DNA polymerase III subunit beta [Photobacterium profundum SS9] gi|46911666|emb|CAG18464.1| Putative DNA polymerase III, beta chain [Photobacterium profundum SS9] Length = 366 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ +G L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L DGA+I+ E G + I G S + L + P ++FP Sbjct: 61 ADFEVGAVTVPSRKFLDICRGLPDGAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L + L++ T F+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIEDWQSDVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D+ AQ IIVPRK V E++R+L + ++ V + + S I + + + Sbjct: 176 RMAVCAIDL-AQELTTKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K + +C LR+A R +I+S+ + + V+++LS ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+S + Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N++ A YV+MP+R+ Sbjct: 350 ----EDCANDE-----AMYVVMPIRL 366 >gi|22127980|ref|NP_671403.1| DNA polymerase III subunit beta [Yersinia pestis KIM 10] gi|45443727|ref|NP_995266.1| DNA polymerase III subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51598226|ref|YP_072417.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108810132|ref|YP_654048.1| DNA polymerase III subunit beta [Yersinia pestis Antiqua] gi|108814114|ref|YP_649881.1| DNA polymerase III subunit beta [Yersinia pestis Nepal516] gi|150260969|ref|ZP_01917697.1| DNA polymerase III, beta subunit protein [Yersinia pestis CA88-4125] gi|153950603|ref|YP_001403094.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP 31758] gi|162419235|ref|YP_001608447.1| DNA polymerase III subunit beta [Yersinia pestis Angola] gi|165926167|ref|ZP_02221999.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165936833|ref|ZP_02225399.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009556|ref|ZP_02230454.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213164|ref|ZP_02239199.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167401667|ref|ZP_02307161.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422858|ref|ZP_02314611.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425558|ref|ZP_02317311.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470925|ref|ZP_02335629.1| DNA polymerase III, beta subunit [Yersinia pestis FV-1] gi|170022264|ref|YP_001718769.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis YPIII] gi|186893346|ref|YP_001870458.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218931073|ref|YP_002348948.1| DNA polymerase III subunit beta [Yersinia pestis CO92] gi|229839803|ref|ZP_04459962.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841888|ref|ZP_04462044.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229896765|ref|ZP_04511928.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A] gi|229904653|ref|ZP_04519764.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516] gi|270488364|ref|ZP_06205438.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27] gi|294505624|ref|YP_003569686.1| DNA polymerase III subunit beta [Yersinia pestis Z176003] gi|21961125|gb|AAM87654.1|AE014012_11 DNA polymerase III, beta-subunit [Yersinia pestis KIM 10] gi|45438597|gb|AAS64143.1| DNA polymerase III, beta subunit protein [Yersinia pestis biovar Microtus str. 91001] gi|51591508|emb|CAH23180.1| DNA polymerase III, beta subunit protein [Yersinia pseudotuberculosis IP 32953] gi|108777762|gb|ABG20281.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516] gi|108782045|gb|ABG16103.1| DNA polymerase III, beta subunit [Yersinia pestis Antiqua] gi|115349684|emb|CAL22665.1| DNA polymerase III, beta subunit protein [Yersinia pestis CO92] gi|149290377|gb|EDM40454.1| DNA polymerase III, beta subunit protein [Yersinia pestis CA88-4125] gi|152962098|gb|ABS49559.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162352050|gb|ABX85998.1| DNA polymerase III, beta subunit [Yersinia pestis Angola] gi|165915075|gb|EDR33686.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922027|gb|EDR39204.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991478|gb|EDR43779.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205462|gb|EDR49942.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958250|gb|EDR55271.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049049|gb|EDR60457.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055572|gb|EDR65365.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748798|gb|ACA66316.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis YPIII] gi|186696372|gb|ACC87001.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis PB1/+] gi|229678771|gb|EEO74876.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516] gi|229691227|gb|EEO83280.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229696169|gb|EEO86216.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700203|gb|EEO88239.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A] gi|262363788|gb|ACY60509.1| DNA polymerase III subunit beta [Yersinia pestis D106004] gi|262367725|gb|ACY64282.1| DNA polymerase III subunit beta [Yersinia pestis D182038] gi|270336868|gb|EFA47645.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27] gi|294356083|gb|ADE66424.1| DNA polymerase III subunit beta [Yersinia pestis Z176003] gi|320017426|gb|ADW00998.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 366 Score = 218 bits (555), Expect = 1e-54, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DS + A YV+MPMR+ Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366 >gi|294665123|ref|ZP_06730426.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605124|gb|EFF48472.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 366 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|329297782|ref|ZP_08255118.1| DNA polymerase III subunit beta [Plautia stali symbiont] Length = 366 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ N+G L + + E+E+ + + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L +GA+IS E G + + G S F L + P S+FP Sbjct: 61 QPHEPGATTVPARKFLDICRGLPEGAEISLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L ++ ++V + S I ++ + Sbjct: 176 RLAVCSMP-VGQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V++ ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVSYSGTELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YV+MPMR+ Sbjct: 348 QIEDVASP-------AAAYVVMPMRL 366 >gi|94502202|ref|ZP_01308697.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65] gi|94425663|gb|EAT10676.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65] Length = 367 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 MK+T+ R +L+ L ++ER+ T+PV +VLL+ L + + E+E+ G A Sbjct: 1 MKLTITREALLKPLQLVAGVVERRQTLPVLSNVLLEVKGDQLSLTGTDLELELIGSATLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ITV A L DI + L D + I +++ +V + G S F L S P +EFP Sbjct: 61 EPGVDGAITVPAKKLMDICKSLPDQSTIEISQDDH---KVQLQTGRSKFVLSSLPANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E + + L+ +++RT FAMA +++RYYLNG+ + ++L+ AVATDGH Sbjct: 118 NIDDIEAQAQVMVPQTQLRRIIDRTAFAMAQQDVRYYLNGMLIEVKPDELR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA V + IA +IVPRKAV E+ ++L +SSV++SLS + + + + + Sbjct: 176 RLATCGVPVELDIADRMQVIVPRKAVLELAKLLMDPESSVELSLSNNHVRAKVGDYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ VIP + +K L + LRQ R +I+S+ + + V+L L +D L + Sbjct: 236 KLVDGKFPDYERVIPRNGNKTLIADRQALRQVFQRTAILSNEKYRGVRLLLENDNLQVVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A ES+ V + ++I FN YL +++ + DD + D+++S+V Sbjct: 296 NNPEQEQAEESIGVEFQGEMLEIGFNVSYLQDVLSVLDG----DDMKMTLADANSSAVME 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS YV+MPMR+ Sbjct: 352 EVEGGDS----------LYVVMPMRL 367 >gi|320157815|ref|YP_004190194.1| DNA polymerase III subunit beta [Vibrio vulnificus MO6-24/O] gi|319933127|gb|ADV87991.1| DNA polymerase III beta subunit [Vibrio vulnificus MO6-24/O] Length = 366 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + + T+P+ ++L+ +G L + A+ E+E+ + Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + ++V + +N+S + Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|291615642|ref|YP_003518384.1| DnaN [Pantoea ananatis LMG 20103] gi|291150672|gb|ADD75256.1| DnaN [Pantoea ananatis LMG 20103] Length = 407 Score = 218 bits (554), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++L+Q N+G L + + E+E+ + Sbjct: 42 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 101 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L +GA+I+ E E + + G S F L + P S+FP Sbjct: 102 QPHETGATTVPARKFLDICRGLPEGAEINVTLEGE---RMLVRSGRSRFSLSTLPASDFP 158 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 159 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 216 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L D+ ++V + S I ++ + Sbjct: 217 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 275 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 276 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 335 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V RL ++S + Sbjct: 336 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 388 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YV+MPMR+ Sbjct: 389 QIEDVVSP-------AAAYVVMPMRL 407 >gi|327395908|dbj|BAK13330.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis AJ13355] Length = 366 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++L+Q N+G L + + E+E+ + + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L +GA+I+ E E + + G S F L + P S+FP Sbjct: 61 QPHETGATTVPARKFLDICRGLPEGAEINVTLEGE---RMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L D+ ++V + S I ++ + Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S A YV+MPMR+ Sbjct: 348 QIEDVVSP-------AAAYVVMPMRL 366 >gi|145597326|ref|YP_001161401.1| DNA polymerase III subunit beta [Yersinia pestis Pestoides F] gi|145209022|gb|ABP38429.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides F] Length = 366 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V RL ++S + Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDSASQ-------VAAYVVMPMRL 366 >gi|27364432|ref|NP_759960.1| DNA polymerase III subunit beta [Vibrio vulnificus CMCP6] gi|27360551|gb|AAO09487.1| DNA polymerase III, beta subunit [Vibrio vulnificus CMCP6] Length = 366 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + + T+P+ ++L+ +G L + A+ E+E+ + Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFIDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + ++V + +N+S + Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|238754005|ref|ZP_04615364.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473] gi|238707757|gb|EEQ00116.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473] Length = 366 Score = 217 bits (553), Expect = 2e-54, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFMLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNTLKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DS + A YV+MPMR+ Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366 >gi|145297126|ref|YP_001139967.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142849898|gb|ABO88219.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 367 Score = 217 bits (552), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R +L L + + T+P+ +VLL + GLL + + E+E+ G + + Sbjct: 1 MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVYLN 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI R L +GA I E G + I G S F L + P SE+P Sbjct: 61 NESQDGRTTVPARKLLDICRGLPEGADIRLNTE---GERLIIRSGRSRFNLSTLPASEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E V F++ LK L++ T F+MA++++RYYLNG+ F E L VATDGH Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFE--SEGHGLRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++V + +I+PRK V E++R+L ++D V++ + S + ++ + Sbjct: 176 RLATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+++ VIP ++DK L +LRQA R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + D++ L S SS I Sbjct: 296 NNPEQEEAEELLDVQYEASEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D D + +A YV+MPMRI Sbjct: 351 --EDFDHQ-------DAQYVVMPMRI 367 >gi|262273131|ref|ZP_06050948.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886] gi|262222887|gb|EEY74195.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886] Length = 366 Score = 216 bits (551), Expect = 3e-54, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R L+ L + + T+P+ ++LL+ G L + + E+E+ +P Sbjct: 1 MKFTVTRDQFLKPLQQVSGALGGRPTLPILGNILLKVESGQLSMTCTDLEVELIANLPLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++TV + DI R L D A ISF E G I G S F L + P ++FP Sbjct: 61 SEAQEGAVTVPSRKFLDICRGLPDSASISFSLE---GDRAVIRSGRSRFTLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L L+ L+E T F+MA +++RY+LNG+ E L +VATDGH Sbjct: 118 NIEDWQSTVEFTLPQGKLRQLMESTAFSMANQDVRYFLNGMLLET--EGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + ++A +IVPRK V E++R+L + D+ V + + + I + + Sbjct: 176 RMAVGTTLLDNELAAQ-QVIVPRKGVTELMRMLDNPDAPVTIQIGSANIRALVNQFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K + C +LRQA R +I+S+ + + V+L+LS+ +L ++ Sbjct: 235 KLVDGRFPDYRRVLPQSSNKIMEAGCDDLRQAFSRAAILSNEKFRGVRLNLSAGQLRISA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A E ++V Y+ ++I FN Y+L++++ + S ++V F + +S + Sbjct: 295 HNPEQEEAEEFVDVNYDGDDLEIGFNVSYVLDVLNTLKS-----EQVRFSMTDGTASTLV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + NN D A YV+MP+R+ Sbjct: 350 -----EDCNNDD----AMYVVMPIRL 366 >gi|90413731|ref|ZP_01221719.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK] gi|90325200|gb|EAS41697.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK] Length = 366 Score = 216 bits (551), Expect = 4e-54, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ +G L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L D A+I+ E G + I G S + L + P ++FP Sbjct: 61 ADFEIGAVTVPSRKFLDICRGLPDSAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L + L++ T F+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIEDWQSEVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D+ ++A IIVPRK V E++R+L + ++ V + + S I + + + Sbjct: 176 RMAVCAIDLAQELAT-KQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K + +C LR+A R +I+S+ + + V+++LS ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+S + Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N++ A YV+MP+R+ Sbjct: 350 ----EDCANDE-----AMYVVMPIRL 366 >gi|285016823|ref|YP_003374534.1| DNA polymerase III subunit beta protein [Xanthomonas albilineans GPE PC73] gi|283472041|emb|CBA14548.1| probable dna polymerase III subunit beta protein [Xanthomonas albilineans] Length = 366 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 215/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV + L+Q + G L + + E+E+ I Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVHGGQLSLTGTDLEVEMVSRIAVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L++IVR L DG++++ N+ ++ + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFEIVRALPDGSKVTVSLSND---KITVQTGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F ++++ L+ C VATDGHR Sbjct: 118 VDEVETTERVVVQEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDKTLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ IIVPRK V E+ R+L D V++ + S + + ++ + + Sbjct: 176 LALCETELENAGGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRNDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++++ LR A+ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYETVIPIGADREVKLDREILRAALQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + ++ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEVEADTKVSDLAIGFNVNYLLDALSALR-----EEFVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + +V+MP+R+ Sbjct: 351 ---------EASSARSRHVVMPLRL 366 >gi|166709897|ref|ZP_02241104.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 366 Score = 216 bits (550), Expect = 5e-54, Method: Compositional matrix adjust. Identities = 124/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ ++ G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLVTLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ C VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ V+P D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVMPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ ++ +V+MP+R+ Sbjct: 351 --EASSEKSR-------HVVMPLRL 366 >gi|87121028|ref|ZP_01076920.1| DNA polymerase III, beta chain [Marinomonas sp. MED121] gi|86163866|gb|EAQ65139.1| DNA polymerase III, beta chain [Marinomonas sp. MED121] Length = 365 Score = 216 bits (549), Expect = 6e-54, Method: Compositional matrix adjust. Identities = 137/388 (35%), Positives = 217/388 (55%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L+ L ++ERK T+PV +VLL+ D L + S E+E+ G I Sbjct: 1 MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLLEVKDNELTLTGSDLEVELVGHI--Q 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D C G ITV A L DI + L D A I ++ T I G S F L + P EF Sbjct: 59 LDECQEGRITVPARKLMDICKSLPDSAVIELSVDD---TRAIIRSGRSRFTLSTLPADEF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + S +A + ++ L+ERT FAMA +++RYYLNG+ F + D +L V+TDG Sbjct: 116 PNIQDMQGDLSVVVAQNSVRRLIERTGFAMANQDVRYYLNGMLFEV--ADGQLRVVSTDG 173 Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRLA A D AQ++ + +IVPRK V E+ R+LS D +V++ + + I + Sbjct: 174 HRLATAIED--AQVSGDLTQVIVPRKGVLELNRLLSDTDETVELQIGANHIRAKVADYIF 231 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L++G+FP+Y VIP +NDK + + LRQ R SI+S+ + + V+L L++ L + Sbjct: 232 TSKLVEGKFPDYHRVIPRNNDKIVIADRLELRQVFLRASILSNEKYRGVRLILTNGMLQV 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +NP+ +A ES+ V Y +++ FN YLL+++ ++S EV L+ + +S Sbjct: 292 FANNPEQEEAEESVLVQYQGDDLEVGFNVSYLLDVLGVVNS-----QEVRISLNDATASA 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + A YV+MPMR+ Sbjct: 347 LVEEADSHA---------AQYVVMPMRL 365 >gi|330813296|ref|YP_004357535.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486391|gb|AEA80796.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 371 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 132/388 (34%), Positives = 222/388 (57%), Gaps = 21/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R IL+ L H ++E+KNT+P+ +VL++A D ++I A+ +I IT I A Sbjct: 1 MEIKIDRDIILKCLNHIQGVVEKKNTLPILANVLIEAFDNKIQISATDLDIIITEKIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T +A +LYD++RKL G+ I +N+ + + G S+F L P SEFP Sbjct: 61 VIKEGSTTTTAQVLYDLIRKLPAGSGIHLNLQND--KRLKLISGKSDFNLTCLPASEFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 ++ E+ S L L+ +T F+++ +E R+YLNGI+ H EED KL AVATDGH Sbjct: 119 LEDSIESDYLEVKSKYLLKLLNKTKFSISNDETRHYLNGIYLHKPEEDNSKLIAVATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RL+ ++ V + K +I+P+K + EI+ I+S + D+ +K+ S+I I+ + + Sbjct: 179 RLSKTQI-TVDENKKFHPVILPKKTIFEIINIISDEPDTPIKILSVRSKIKFIIKDIVLI 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y+ VIP KE+ N + AVDR+ +S+ R +K+++ + K+ Sbjct: 238 SKVIDGKFPDYEKVIPSDTRKEVLANVADFISAVDRIKSLSADRKGVIKINIENHKIRFF 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G+ IE ++ Y ++I FN YL++I + I D+ + + + S + Sbjct: 298 INDTSSGEGIEEISAVYEGDNLEIGFNSGYLMDIANCIQ-----DENITLKPKDATSPII 352 Query: 359 IRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 I+ KD DS YV+MPMR+ Sbjct: 353 IKDQKDPDST----------YVVMPMRV 370 >gi|257097208|pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant gi|257097209|pdb|3F1V|B Chain B, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant Length = 366 Score = 215 bits (548), Expect = 8e-54, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA YYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAAAAAAYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|253686411|ref|YP_003015601.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251752989|gb|ACT11065.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 366 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++L+Q + L + + E+E+ + Sbjct: 1 MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEDALSLTGTDLEMEMVAKVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + V Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L L ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V RL ++S + Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKCEGV-------RLLLTDSVSSV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ A YV+MPMR+ Sbjct: 348 QIEDSASR-------AAAYVVMPMRL 366 >gi|330970326|gb|EGH70392.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aceris str. M302273PT] Length = 367 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 218/389 (56%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPSN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|66043273|ref|YP_233114.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae B728a] gi|302185841|ref|ZP_07262514.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae 642] gi|63253980|gb|AAY35076.1| DNA polymerase III, beta chain [Pseudomonas syringae pv. syringae B728a] gi|330976403|gb|EGH76460.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 367 Score = 215 bits (547), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 218/389 (56%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|90415377|ref|ZP_01223311.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2207] gi|90332700|gb|EAS47870.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2207] Length = 366 Score = 214 bits (546), Expect = 1e-53, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 MK ++ R +L L ++ER+ T+P+ +VLL + L + + E+EI G A Sbjct: 1 MKFSLSREALLNPLQLVVGVVERRQTLPILSNVLLTLDGSRLAVTGTDLEVEIIGHADVV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G +TVSA DI R L +GA I F + + + G S F L + P +EFP Sbjct: 61 SADEAGEVTVSARKFLDICRSLPEGANIKFSSSD---GKAQVVSGRSRFTLATLPANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E F++A +LKNL++ T FAMA +++RYYLNG+ + ++ KL AVATDGH Sbjct: 118 SVDNGENNIQFDIAGVILKNLIDATSFAMAQQDVRYYLNGMLWEVSAN--KLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+ + + +I ++ I+PRK V E+ R+++ + V+V++ + I ++ + Sbjct: 176 RMALCDAECNIEIGELTKAILPRKGVIELSRLVAD-EGVVRVAMGSNHIRVDGSDYCFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG +P+Y V+P DK + N L+QA R +I+S+ + + V++ LS+ + M Sbjct: 235 KLVDGAYPDYDRVLPKGGDKLVEGNRAELKQAFGRTAILSNEKYRGVRIMLSNGAIKMVA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN YLL++++ + D V L S+SS + Sbjct: 295 NNPEQEEAEEEVGVDYAGDELEIGFNVSYLLDVLNVLKG-----DGVRLTLSDSSSSALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ + +A YV+MPMR+ Sbjct: 350 ----EDAADG-----SAVYVVMPMRL 366 >gi|163751708|ref|ZP_02158927.1| DNA polymerase III, beta subunit [Shewanella benthica KT99] gi|161328447|gb|EDP99603.1| DNA polymerase III, beta subunit [Shewanella benthica KT99] Length = 366 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 218/387 (56%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHTLKMTGTDLEVELVGQVQLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G T+ A DIV+ L D +I +EN L + G S F L + P E+ Sbjct: 61 GDVEEGRTTIPAKKFLDIVKSLPDQVEIKIEQQENRLL----LRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E F + +LK+L++ T F+MA +++RYYLNG+ + L+ A+ATDG Sbjct: 117 PNVEAFESDIEFTIKQGILKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ I A + K +IVPRK V E+ R+ +D V +++ ++ I S ++ Sbjct: 175 HRLALSHRKIEANLPK-KQVIVPRKGVVELQRLYEGEDLDVTIAIGDNAIRATTSSAVLT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ L +T Sbjct: 234 SKLIDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y+ P++I FN YLL++++N+ S DEV L NSS Sbjct: 294 ANNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DEVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ N+ YV+MPMR+ Sbjct: 349 IENHIEE---------NSMYVVMPMRL 366 >gi|237806778|ref|YP_002891218.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187] gi|237499039|gb|ACQ91632.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187] Length = 367 Score = 214 bits (546), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ ++ R +L L I + T+P+ +VLL + L + + E+E+ G +P A Sbjct: 1 MQFSISRDSLLRPLQLVSGSIGGRPTLPILSNVLLNVTEQRLSLTGTDLEVEMIGLVPLA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSIT A L DI R L DGAQ+ F E G + + G S + L + P +++P Sbjct: 61 GAVAVGSITTPARKLLDICRGLPDGAQLDFVLE---GERLILRSGRSRYSLSTLPAADYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E V F+++ LK L+E T F+MA++++R+YLNG+ F + + L+ V TDGH Sbjct: 118 NIEEWNSVLEFDISQQELKRLMEATQFSMASQDVRFYLNGMLFETSGQGLR--TVGTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA +++ + +I+PRK V E+ R+L + D ++++ + + + E + Sbjct: 176 RLATCRREVLNEPQSDHQVILPRKGVLELARLLENDDRTIRLQIGLNNLRAEAEGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V P +DK L L+QA R +I+S+ + + V+L L+++ L +T Sbjct: 236 KLVDGRFPDYRRVFPRQSDKILIAERELLKQAFSRAAILSNEKFRGVRLHLTTNLLHITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ +++ FN Y+L++++ + ++V + L +NSS + Sbjct: 296 NNPEQEEAEELIDVQYDGPELEVGFNVSYVLDVLNALKC-----EQVKWYLTDANSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ N+ +A YV+MPMR+ Sbjct: 351 ----EDASND-----DAQYVVMPMRL 367 >gi|92112138|ref|YP_572066.1| DNA polymerase III subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795228|gb|ABE57367.1| DNA polymerase III, beta subunit [Chromohalobacter salexigens DSM 3043] Length = 367 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 205/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 M+ T+ R +L L ++ER+ T+PV +VLLQ D L + + E+E+ G P Sbjct: 1 MRFTITREALLRPLSLVAGVVERRQTLPVLSNVLLQVQDSQLALTGTDLEVELIGRTTPH 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD GS TV A L DI + L + I+F E G + + G S F L + P +EFP Sbjct: 61 HVDEPGSATVPARKLMDICKSLPEQTDITFTLEE--GRAI-LRAGRSRFTLSTLPVAEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + LA LK+L++ T FAMA +++RYYLNG+ ++ VATDGH Sbjct: 118 NIEGSQSDTTLTLARGTLKHLIDATSFAMAQQDVRYYLNGMLLEFGHHLVR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++ +IVPRK + E+ R+L D V++++ + + + + Sbjct: 176 RLAVCARSADVEVEPSQKLIVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y VIP DK + LRQ + R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGKFPDYDRVIPRGGDKVVIAERGELRQVLSRTAILSNEKYRGVRLNLEENNLRVTA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ + Y+ +++ FN YL++++ + + D V L NSS + Sbjct: 296 NNPEQEEAEENVAIEYDGGALEVGFNVGYLVDVLGVLDA-----DRVQMTLSDPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 351 ---------EEPGGGDAMYVVMPMRL 367 >gi|300112747|ref|YP_003759322.1| DNA polymerase III subunit beta [Nitrosococcus watsonii C-113] gi|299538684|gb|ADJ27001.1| DNA polymerase III, beta subunit [Nitrosococcus watsonii C-113] Length = 367 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 135/388 (34%), Positives = 218/388 (56%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R +I+ L C ++ER++T+P+ +VLL D L + A+ EIEI A Sbjct: 1 MRFSIKREEIVRHLVTICGVVERRHTLPILSNVLLSVKDSRLSLMATDLEIEIKTAFDIL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G IT+SA +I R L + + + +KE + I G S F L + P +FP Sbjct: 61 SPEEGKITISARKFLEICRALPSQSALEAQYKEGQF----YIHSGRSRFTLSTLPAEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + V EL + LK L+ RT F MA +++RYYLNG+ + EE + AVATDGH Sbjct: 117 SIDSIDAVAELELTQAELKKLLYRTVFCMAHQDVRYYLNGLLLELTEEAIH--AVATDGH 174 Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+A + +Q A I+PRKA+ E++R+L + SV++ +++ + LS S Sbjct: 175 RLALASLAKGSQQAGTEIQSIIPRKAILELVRLLEESNDSVRLKFGTNQMRAEFQGLSFS 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+++ + + V L LS+ KL Sbjct: 235 TKLIDGQFPDYKRVIPVGCEKQFVADREKFKQALVRVNILTNDKYRGVHLHLSALKLQAI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G A E +++ Y ++I FN YL++++ I ++E+ ++ F ++NSS Sbjct: 295 VTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLSIIDTEEI---KLTF--TNANSSCL 349 Query: 359 IRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 I DK DSK YV+MPMR+ Sbjct: 350 ITPIDKADSK----------YVVMPMRL 367 >gi|262189752|ref|ZP_06048107.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93] gi|262034366|gb|EEY52751.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93] Length = 353 Score = 214 bits (545), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 111/342 (32%), Positives = 199/342 (58%), Gaps = 7/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +NP+ +A E ++V + P++I FN Y+L++++ + D V Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNV 336 >gi|254435596|ref|ZP_05049103.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27] gi|207088707|gb|EDZ65979.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27] Length = 377 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R +I+ L C ++ER++T+P+ +VLL D L + A+ EIEI A+ Sbjct: 11 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 70 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +TVSA +I R L G+ + + +KE + I G S F L + P +FP Sbjct: 71 SSEEGKVTVSARKFLEICRALPSGSALEAQYKEGQF----YIHSGRSRFTLSTLPAEDFP 126 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + V EL + LK L+ RT F MA +++RYYLNG+ + EE + AVATDGH Sbjct: 127 SIDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIH--AVATDGH 184 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+A + A Q I+PRKA+ E++R+L V++ +++ + LS S Sbjct: 185 RLALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFS 244 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+++ + + V L LS KL Sbjct: 245 TKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAI 304 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G A E +++ Y ++I FN YL+++++ I + EV RL +N+S Sbjct: 305 VTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEV-------RLTFTNASSS 357 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ ++K YV+MPMR+ Sbjct: 358 CLITPIDASDSK-------YVVMPMRL 377 >gi|15988190|pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of Beta-Delta (1-140) gi|16974833|pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex gi|16974834|pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex Length = 366 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E E + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R + S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAAASNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S+ +A YV+MPMR+ Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366 >gi|209693644|ref|YP_002261572.1| DNA polymerase III subunit beta [Aliivibrio salmonicida LFI1238] gi|208007595|emb|CAQ77695.1| DNA polymerase III subunit beta-subunit [Aliivibrio salmonicida LFI1238] Length = 369 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 224/386 (58%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + ++P+ ++LLQ +G L + A+ E+E+ I Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPSLPIFGNILLQVENGQLSMTATDLEVELISNILLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ITV + DI R L DGA I+ E G V + G S F L + P +FP Sbjct: 61 GDFEAGAITVPSRKFLDICRGLPDGANITIVLE---GDRVLVRSGRSRFTLATLPAQDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L+ + L+ L+E T F+MA +++RYYLNG+ F + +VATDGH Sbjct: 118 NIEGWQSEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGTIFR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + + +++ + +I+PRK + E++R+L S + SV + S + + + + Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K L +C LRQA R +I+S+ + + V+++L+++++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L+++D +++ + + V + ++N+S + Sbjct: 295 NNPEQEEAEEILDVDFQGEDIEIGFNVSYVLDVLDVLNTLKC--ERVRISMTTANASALV 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N++ A YV+MP+R+ Sbjct: 353 ----EDCANDE-----AQYVVMPIRL 369 >gi|24371609|ref|NP_715651.1| DNA polymerase III, beta subunit [Shewanella oneidensis MR-1] gi|24345359|gb|AAN53096.1|AE015452_9 DNA polymerase III, beta subunit [Shewanella oneidensis MR-1] Length = 366 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 223/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK+L++ T F+MA +++RYYLNG+ I E L A+ATDGH Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLL--IETEGNMLRAIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L + D + +S+ ++ I + + Sbjct: 176 RLALSHRVIEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + + +QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN P++I FN YLL++++N+ SD+V + +D ++S++ Sbjct: 295 NNPEQEEAEEIIDVDYNNLPLEIGFNVSYLLDVLNNLKSDDV----RITLIDGNSSALLE 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++DS YV+MPMR+ Sbjct: 351 NHLEEDS----------MYVVMPMRL 366 >gi|77163563|ref|YP_342088.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707] gi|76881877|gb|ABA56558.1| DNA polymerase III, beta subunit [Nitrosococcus oceani ATCC 19707] Length = 367 Score = 214 bits (544), Expect = 2e-53, Method: Compositional matrix adjust. Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R +I+ L C ++ER++T+P+ +VLL D L + A+ EIEI A+ Sbjct: 1 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +TVSA +I R L G+ + + +KE + I G S F L + P +FP Sbjct: 61 SSEEGKVTVSARKFLEICRALPSGSALEAQYKEGQF----YIHSGRSRFTLSTLPAEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + V EL + LK L+ RT F MA +++RYYLNG+ + EE + AVATDGH Sbjct: 117 SIDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIH--AVATDGH 174 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+A + A Q I+PRKA+ E++R+L V++ +++ + LS S Sbjct: 175 RLALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFS 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+++ + + V L LS KL Sbjct: 235 TKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G A E +++ Y ++I FN YL+++++ I + EV RL +N+S Sbjct: 295 VTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEV-------RLTFTNASSS 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ ++K YV+MPMR+ Sbjct: 348 CLITPIDASDSK-------YVVMPMRL 367 >gi|74316020|ref|YP_313760.1| DNA polymerase III subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74055515|gb|AAZ95955.1| DNA polymerase III, beta chain [Thiobacillus denitrificans ATCC 25259] Length = 367 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 120/384 (31%), Positives = 218/384 (56%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I ER+ +L L ++ER++T+P+ ++LL+ G L + A+ E++++ + A Sbjct: 4 IQSERNALLSALSAVVGVVERRHTLPILSNLLLEKKAGTLTLLATDLELQVSTRLEAQGG 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 +IT++A L+DIVR L D A + ++ ++V +S G S F LQ+ P ++FP + Sbjct: 64 DDFAITIAARKLFDIVRALPDSASVKLDTKD---SQVVVSAGKSRFTLQTLPAADFPRVE 120 Query: 123 EEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + L LK L++ FAMA+++IRYYLNG+ ++ + L++ VATDGHRL Sbjct: 121 TGAGVGTVVRLPQKTLKRLLQLVQFAMASQDIRYYLNGMLLVLDGQQLRV--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 + AE + A +I+PRK V E+ ++LS D V++ + +++ + + + ++ Sbjct: 179 SYAETTLDAP-TDAQEVIIPRKTVIELSKLLSDSDEPVELRIGSNQVTIMLPGTELVTKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG+FP+YQ VIP + + L+ N + QA+ R +I+S+ + + V+L +S + L + +N Sbjct: 238 VDGKFPDYQRVIPANQPRHLKANRQTVVQALQRAAILSNEKFRGVRLVMSDNTLGIVCNN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A + + V YN P+D+ FN YLL+ + +++ DE+ L +NSS+ + Sbjct: 298 NEQEEAADEIEVSYNGDPLDVGFNVTYLLDGLGAVNT-----DEITLSLGDANSSMLL-- 350 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 + + YV+MPMRI Sbjct: 351 -------TSEGEPGFKYVVMPMRI 367 >gi|71736736|ref|YP_272317.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557289|gb|AAZ36500.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321689|gb|EFW77788.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320331109|gb|EFW87080.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330881907|gb|EGH16056.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330952331|gb|EGH52591.1| DNA polymerase III subunit beta [Pseudomonas syringae Cit 7] gi|330961506|gb|EGH61766.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] gi|330987020|gb|EGH85123.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 367 Score = 214 bits (544), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|126172259|ref|YP_001048408.1| DNA polymerase III subunit beta [Shewanella baltica OS155] gi|152998557|ref|YP_001364238.1| DNA polymerase III subunit beta [Shewanella baltica OS185] gi|160873128|ref|YP_001552444.1| DNA polymerase III subunit beta [Shewanella baltica OS195] gi|217971218|ref|YP_002355969.1| DNA polymerase III subunit beta [Shewanella baltica OS223] gi|304412706|ref|ZP_07394309.1| DNA polymerase III, beta subunit [Shewanella baltica OS183] gi|307305829|ref|ZP_07585575.1| DNA polymerase III, beta subunit [Shewanella baltica BA175] gi|125995464|gb|ABN59539.1| DNA polymerase III, beta subunit [Shewanella baltica OS155] gi|151363175|gb|ABS06175.1| DNA polymerase III, beta subunit [Shewanella baltica OS185] gi|160858650|gb|ABX47184.1| DNA polymerase III, beta subunit [Shewanella baltica OS195] gi|217496353|gb|ACK44546.1| DNA polymerase III, beta subunit [Shewanella baltica OS223] gi|304348916|gb|EFM13331.1| DNA polymerase III, beta subunit [Shewanella baltica OS183] gi|306911322|gb|EFN41748.1| DNA polymerase III, beta subunit [Shewanella baltica BA175] gi|315265353|gb|ADT92206.1| DNA polymerase III, beta subunit [Shewanella baltica OS678] Length = 366 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQVVVH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK++++ T F+MA +++RYYLNG+ F E L A+ATDGH Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFET--EGNVLRAIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L S D + +++ ++ I + + Sbjct: 176 RLALSHRTIEAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEIIDVEYNNQALEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|226942172|ref|YP_002797245.1| DNA polymerase III subunit beta [Azotobacter vinelandii DJ] gi|226717099|gb|ACO76270.1| DNA polymerase III, beta chain 1, 2, and 3 protein [Azotobacter vinelandii DJ] Length = 367 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G +P Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEKQQLSLTGTDLEVELVGRVPLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L DI + L + I + + ++ I G S F L + P S+FP Sbjct: 61 ENAEPGEITVPARKLMDICKSLPNDTLIDIRLDEQ---KLLIKAGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ +N L+ AVATDGH Sbjct: 118 TAEEGLGSLTFSLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEMNGGVLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLALCSMQSGIEHADRHQVIVPRKGILELARLLTDQDGEVSIVLGQYHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK++ + LR+A R +I+S+ + + ++L L+S L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKKVLGDRQLLREAFSRTAILSNEKYRGIRLQLASGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y+ ++I FN YLL+++ +S+ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEVAVDYSGDALEIGFNVSYLLDVLGVMSA-----EQVCLTLSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QEADND---------DSAYVVMPMRL 367 >gi|237801663|ref|ZP_04590124.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024522|gb|EGI04578.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 367 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 218/389 (56%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVMGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V Y+ ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYSGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|197334198|ref|YP_002154782.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11] gi|197315688|gb|ACH65135.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11] Length = 366 Score = 213 bits (543), Expect = 3e-53, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + ++P+ ++LLQ +G L + A+ E+E+ I Sbjct: 1 MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L D A I+ E G V + G S F L + P ++FP Sbjct: 61 GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L+ + L+ L+E T F+MA +++RYYLNG+ F + +VATDGH Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGNIFR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + + +++ + +I+PRK + E++R+L S D SV + S + + + + Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPDQSVTLQFGNSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K L +C LRQA R +I+S+ + + V+++L+++++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + ++N+S + Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N++ A YV+MP+R+ Sbjct: 350 ----EDCANDE-----AQYVVMPIRL 366 >gi|114561190|ref|YP_748703.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB 400] gi|114332483|gb|ABI69865.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB 400] Length = 366 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 227/387 (58%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 MK +++R +L+ L C +ER++ +P+ ++L++ ++ L++ + E+E+ G AI Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSESSLKLTGTDLEVELVGQAAIH 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D+ G TV A L DIV+ L + +++ +++ + + G S F L + P ++ Sbjct: 61 GDIDI-GRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +E + F L VLK++++ T F+MA +++RYYLNG+ F E L A+ATDG Sbjct: 117 PNVEEFQADIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFET--EGNVLRAIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ + + + +IVPRK V E+ R+L S D + +++ ++ I S + Sbjct: 175 HRLALSHRTLDVSLPE-KQVIVPRKGVVEMARLLDSDDQDITIAIGDNAIRAITSSAVFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P +K + + L+QA+ R SI+S+ + + V++ L + L +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGNKVVIASRNQLKQALTRASILSNEKFRGVRIQLETGLLKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y+ ++I FN YLL++++N++SDEV + +D ++S++ Sbjct: 294 ANNPEQEEAEEIIDVEYDSDNLEIGFNVSYLLDVLNNLASDEV----RITLIDGNSSALI 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 K++DS YV+MPMR+ Sbjct: 350 ENHKEEDS----------MYVVMPMRL 366 >gi|88813025|ref|ZP_01128267.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231] gi|88789658|gb|EAR20783.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231] Length = 366 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 130/385 (33%), Positives = 206/385 (53%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ VER+ +L+ L ++ER+ T+P+ ++LL A + L I A+ E+EI A Sbjct: 1 MEFDVERTALLKALQSIIGVVERRQTLPILANILLDAREQRLAITATDLEVEIQAHAQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G T+ A L DIVR L + A I ++ + + S F L + P +FP+ Sbjct: 61 LSQAGETTLPARKLMDIVRNLPEHADIHVSTSHD---RIALQLPHSRFTLATLPTKDFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E EL S L+ L++RT FAMA +++RYYLNG+ + E L AVATDGHR Sbjct: 118 VEEIGQTQDLELTQSHLRWLIDRTGFAMALQDVRYYLNGLLLEL--EPYCLRAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AEV + + +IVPRK + E+LR+L+ D +++ L ++ I + + + + Sbjct: 176 LALAEVVTELPLTETKQVIVPRKGIQELLRLLTDSDEPLRLELGDNHIRVTWPEVRFTTK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+DG+FP+YQ VIP N L+V LRQA+ R +I+S+ + V+ L L + + Sbjct: 236 LLDGQFPSYQRVIPKQNGGCLQVERHTLRQALIRAAILSNEHLHGVRFILGGTSLRICSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP +A E + Y+ +I FN YLL+ + I V +F L ++NSS +R Sbjct: 296 NPAQEEAEEELTAAYDGEAFEIGFNASYLLDALAAIEESTV----EIF-LTNANSSALLR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G + YV+MP+R+ Sbjct: 351 GAGNE---------RCRYVVMPLRL 366 >gi|269103821|ref|ZP_06156518.1| DNA polymerase III beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163719|gb|EEZ42215.1| DNA polymerase III beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 365 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 220/387 (56%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R +L+ L + R ++P+ ++LLQ +GLL + + E+E+ I Sbjct: 1 MKFTLAREQLLKPLQQVSGALGRP-SLPILGNILLQVEEGLLSLTGTDLEVELVAKIVLE 59 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ITV + DI R L D A IS E G I G S + L + P S+FP Sbjct: 60 GEFEAGAITVPSRKFLDICRGLPDSATISVSVE---GDRALIRSGRSRYSLATLPASDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL S L+ L++ T F+MA +++RYYLNG+ F + + L+ VATDGH Sbjct: 117 NIDDWQSEVEFELEQSRLRQLIDSTQFSMAHQDVRYYLNGMLFETDGKLLR--TVATDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D + II+PRK V E++R+L + ++ V++ + S + + + + Sbjct: 175 RMAVCAIDTAYDVPSK-QIILPRKGVLELVRLLDNPEAPVQIQIGGSNLRATVNNFVFTS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +++K + +C LR+A R +I+S+ + + V+++L++ ++ +T Sbjct: 234 KLVDGRFPDYRRVLPQNSNKFVTASCDELRKAFSRAAILSNEKFRGVRVNLAAGEMRITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN Y+L++++ + ++V L +N+S + Sbjct: 294 NNPEQEEAEEFLDVDYQGEPIEIGFNVSYVLDVLNTLKC-----EQVKMSLTDANASALL 348 Query: 360 RGKDKDSKNNKDNKV-NAFYVLMPMRI 385 +DN V +A YV+MP+R+ Sbjct: 349 ----------EDNAVDDAMYVVMPIRL 365 >gi|330890248|gb|EGH22909.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. mori str. 301020] Length = 367 Score = 213 bits (542), Expect = 4e-53, Method: Compositional matrix adjust. Identities = 127/389 (32%), Positives = 216/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSSDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|149912067|ref|ZP_01900658.1| DNA polymerase III subunit beta [Moritella sp. PE36] gi|149804863|gb|EDM64900.1| DNA polymerase III subunit beta [Moritella sp. PE36] Length = 366 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R +L L + + T+P+ +VLL A +G L + + E+E+ G + Sbjct: 1 MQFTINREALLRPLQLVSGALGNRPTLPILGNVLLDAKEGKLTLTGTDLEVELIGQVTLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI R L D AQI N+ + + G S F L + P +EFP Sbjct: 61 GEFTEGRTTVPAKKLLDICRGLPDSAQIQVSYAND---RIVVKSGRSRFSLSTLPATEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + FEL L+ L++ T F+MA++++RYYLNG+ F L+ VATDGH Sbjct: 118 NIEDWDNDIEFELLQGSLRRLIDNTQFSMASQDVRYYLNGMLFETEGNILR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAVA + A + K +IVPRK V E++R+L S++ VK+ L + I + Sbjct: 176 RLAVASCEHDANL-KQQQVIVPRKGVLELVRLLDSEEDMVKIQLGSNNIRAITSGFVFTC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L + L+QA R +I+S+ + + V+L+++ L +T Sbjct: 235 KLVDGRFPDYRRVLPKNADKMLISSREELKQAFSRAAILSNEKFRGVRLNMNQGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + +++ L +NSS I Sbjct: 295 NNPEQEEAEELLDVAFAHDELEISFNVSYVLDVLNTLKC-----EKIKISLSDANSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D A YV+MPMR+ Sbjct: 350 EDEQSD---------QALYVVMPMRL 366 >gi|254282661|ref|ZP_04957629.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B] gi|219678864|gb|EED35213.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B] Length = 365 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 128/388 (32%), Positives = 215/388 (55%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M T+ R +++ L ++ER+ T+P+ +VLL+ LE+ + E+E+ G + A Sbjct: 1 MNFTIPRDALIKPLNLVAGVVERRQTLPILSNVLLRVEGNRLELTGTDLEVELLGRVDLA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L +G++I+F ++ T + G S F L + P ++FP Sbjct: 61 EPGEAGEITVPARKLVDICKSLPEGSEINFSVDSGKAT---VKAGRSRFTLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E S L SVLK L++RT FAMA +++RYYLNG+ I L++ VATDGH Sbjct: 118 TVESSEGEVSVSLPQSVLKRLIDRTGFAMAQQDVRYYLNGMLLEILGGRLRM--VATDGH 175 Query: 180 RLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ A+ + A A S+I+PRK V E+ R+L D V + + + + + Sbjct: 176 RLALCTAQEPVEAGDA---SVIIPRKGVLELARLLEG-DGPVTLVIGSNHVRAANLQFTF 231 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG+FP Y+ V+P S DK + + LRQA R +I+S+ + + V+L ++ D L + Sbjct: 232 TSKLVDGKFPEYERVLPKSPDKSVVGDRQTLRQAFTRTAILSNEKYRGVRLKIADDTLEI 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V + P+++ FN YLL+++ + D++V L + SS Sbjct: 292 TANNPEQEQAEEVVSVEFQGDPLEVGFNVSYLLDVLSVLG-----DEKVRLSLADAASSA 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMR+ Sbjct: 347 LLEEADGG---------DSLYVVMPMRL 365 >gi|28867245|ref|NP_789864.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|213968440|ref|ZP_03396583.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301384272|ref|ZP_07232690.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302063878|ref|ZP_07255419.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato K40] gi|302131961|ref|ZP_07257951.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850479|gb|AAO53559.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213926728|gb|EEB60280.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato T1] gi|331017724|gb|EGH97780.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 367 Score = 213 bits (541), Expect = 5e-53, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + +LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEIGVEYNGEALEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|330876356|gb|EGH10505.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964180|gb|EGH64440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 367 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 216/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEIGVEYNGESLEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|312882234|ref|ZP_07741980.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309370078|gb|EFP97584.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 366 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 223/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++RS +L+ L + + T+P+ ++LL+ DG+L I A+ E+E+ + Sbjct: 1 MKFSIQRSHLLKPLQQVSGALGGRPTLPILGNLLLKVADGMLLITATDLEVELISRVNLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ITV + DI R L D A I+F E G V I G S F L + P +FP Sbjct: 61 GEFEAGTITVPSRKFLDICRGLPDEAVITFVLE---GDRVQIRSGRSRFSLSTLPAHDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ LVE+T F+MA +++RYYLNG+ F + + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQAELRTLVEKTQFSMANQDVRYYLNGMLFEL--DGTTLSSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+A+V++ + A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAMAQVNLEGEFAQQ-QIIVPRKGVLELVKLLDAPEQKVVLQVGSSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+ + K L +C L+ A R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMSLTPSKTLLADCDQLKHAFSRAAILSNEKFRGVRVNLTDSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + +EV V D+++S++ Sbjct: 295 NNPEQEEAEEILDVNYQGEAIEIGFNVGYVLDVLNTLKCNEV----RVSMTDATSSTLI- 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +DN +A YV+ P+R+ Sbjct: 350 -------ENAQDN--SAVYVVSPIRL 366 >gi|114045515|ref|YP_736065.1| DNA polymerase III subunit beta [Shewanella sp. MR-7] gi|113886957|gb|ABI41008.1| DNA polymerase III, beta subunit [Shewanella sp. MR-7] Length = 366 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVVH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK+L++ T F+MA +++RYYLNG+ E L A+ATDGH Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L + D + +++ ++ I + + Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + + +QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN P++I FN YLL++++N+ SD+V + +D ++S++ Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKSDDV----RITLIDGNSSALLE 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++DS YV+MPMR+ Sbjct: 351 NHLEEDS----------MYVVMPMRL 366 >gi|304414286|ref|ZP_07395654.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola LSR1] gi|304283500|gb|EFL91896.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola LSR1] Length = 375 Score = 212 bits (540), Expect = 7e-53, Method: Compositional matrix adjust. Identities = 132/394 (33%), Positives = 217/394 (55%), Gaps = 28/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++R +L+ L + + +P+ ++LLQ +D L + + EIE+ I S Sbjct: 1 MKFTIKREHLLKPLQQVSGPLSARTALPILANLLLQVSDNTLTLTGTDLEIEMVATIALS 60 Query: 61 VD---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 GS TV A +DI R L + A+I+ E + ++I G S F L + Sbjct: 61 QSHKTETGSTTVPARKFFDICRGLPEDAEITVTLETK---RLSIRSGHSRFSLSILSARD 117 Query: 118 FPSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 FP+ + +E ++ + LK L++ T FAMA +++RYYLNG+ F + E KLCA+ Sbjct: 118 FPNLADLKKEKEVELTVSPAALKCLIDSTQFAMAHQDVRYYLNGMLFEVEGE--KLCAIT 175 Query: 176 TDGHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 TDGHRLAV I+ AQ K S+IVPRKAV E+ R+LS + + + + + I ++ Sbjct: 176 TDGHRLAVCSTSIIQKDTAQELKKYSVIVPRKAVIELARLLSGGEDRLCLQIGSNNIRVH 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +L+DG FP+Y+ V P + K + NC L+QA R +I+S+ + + V+L +S Sbjct: 236 LNGFIFTSKLVDGRFPDYKRVFPKNPSKIVIANCEQLKQAFSRAAILSNAKFRGVRLHIS 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + KL +T +NP+ +A E+++V Y ++I FN YLL++++ + D+V L Sbjct: 296 AGKLKITANNPEQEEAEETLDVDYQGEDIEISFNVGYLLDVLNALKC-----DKVKLLLI 350 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S SSV I N +N++ Y++MPMR+ Sbjct: 351 DSVSSVQI--------ENIENQITT-YIVMPMRL 375 >gi|330500916|ref|YP_004377785.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01] gi|328915202|gb|AEB56033.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01] Length = 367 Score = 212 bits (539), Expect = 9e-53, Method: Compositional matrix adjust. Identities = 125/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D G ITV A L DI + L A I +++ ++ + G S F L + P ++F Sbjct: 61 -DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +E +F L + L+ L+ERT FAMA +++RYYLNG+ + L+ AVATDG Sbjct: 117 PTVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGLLR--AVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ ++ Q +IVPRK + E+ R+L+ +D+ V + L + I N + + Sbjct: 175 HRLAMCSMEASIQQDGKHQVIVPRKGILELARLLTEQDAEVSIVLGQHHIRANTGEFTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L+L+ L + Sbjct: 235 SKLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLADGLLKIQ 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + V YN ++I FN YLL+++ + + ++V L SNSS Sbjct: 295 ANNPEQEEAEEEIVVDYNGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 350 LQEADND---------DSAYVVMPMRL 367 >gi|257485598|ref|ZP_05639639.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628213|ref|ZP_06461167.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649103|ref|ZP_06480446.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|330870076|gb|EGH04785.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011886|gb|EGH91942.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 367 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|15595200|ref|NP_064722.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO1] gi|107098996|ref|ZP_01362914.1| hypothetical protein PaerPA_01000002 [Pseudomonas aeruginosa PACS2] gi|116053722|ref|YP_788157.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|218888748|ref|YP_002437612.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa LESB58] gi|254237755|ref|ZP_04931078.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719] gi|254243116|ref|ZP_04936438.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192] gi|296386474|ref|ZP_06875973.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAb1] gi|313111476|ref|ZP_07797277.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016] gi|13959347|sp|Q9I7C4|DPO3B_PSEAE RecName: Full=DNA polymerase III subunit beta gi|9945820|gb|AAG03392.1|AE004440_2 DNA polymerase III, beta chain [Pseudomonas aeruginosa PAO1] gi|115588943|gb|ABJ14958.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126169686|gb|EAZ55197.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719] gi|126196494|gb|EAZ60557.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192] gi|218768971|emb|CAW24729.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa LESB58] gi|310883779|gb|EFQ42373.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016] Length = 367 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 215/391 (54%), Gaps = 30/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + I E + ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F +A S L+ L++RT FAMA +++RYYLNG+ +N L+ +VATDGH Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 RLA+ +D A++PS +IVPRK + E+ R+L+ +D V + L + I Sbjct: 176 RLAMCSLD-----AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGE 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L LS+ Sbjct: 231 FTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGL 290 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + +NP+ +A E + V YN ++I FN YLL+++ I + ++V F L SN Sbjct: 291 LKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSN 345 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS + D D ++ YV+MPMR+ Sbjct: 346 SSALVHEADND---------DSAYVVMPMRL 367 >gi|113968348|ref|YP_732141.1| DNA polymerase III subunit beta [Shewanella sp. MR-4] gi|117918469|ref|YP_867661.1| DNA polymerase III subunit beta [Shewanella sp. ANA-3] gi|113883032|gb|ABI37084.1| DNA polymerase III, beta subunit [Shewanella sp. MR-4] gi|117610801|gb|ABK46255.1| DNA polymerase III, beta subunit [Shewanella sp. ANA-3] Length = 366 Score = 212 bits (539), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVIH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK+L++ T F+MA +++RYYLNG+ E L A+ATDGH Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L + D + +++ ++ I + + Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + + +QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN P++I FN YLL++++N+ SD+V + +D ++S++ Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKSDDV----RITLIDGNSSALLE 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++DS YV+MPMR+ Sbjct: 351 NHLEEDS----------MYVVMPMRL 366 >gi|298484610|ref|ZP_07002715.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160867|gb|EFI01883.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 367 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDVKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|59710617|ref|YP_203393.1| DNA polymerase III subunit beta [Vibrio fischeri ES114] gi|59478718|gb|AAW84505.1| DNA polymerase III, beta subunit [Vibrio fischeri ES114] Length = 366 Score = 211 bits (538), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + ++P+ ++LLQ +G L + A+ E+E+ I Sbjct: 1 MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L D A I+ E G V + G S F L + P ++FP Sbjct: 61 GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L+ + L+ L+E T F+MA +++RYYLNG+ F + +VATDGH Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGNIFR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + + +++ + +I+PRK + E++R+L S + SV + S + + + + Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K L +C LRQA R +I+S+ + + V+++L+++++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + ++N+S + Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N++ A YV+MP+R+ Sbjct: 350 ----EDCANDE-----AQYVVMPIRL 366 >gi|239993751|ref|ZP_04714275.1| DNA polymerase III, beta subunit [Alteromonas macleodii ATCC 27126] gi|332139412|ref|YP_004425150.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep ecotype'] gi|327549434|gb|AEA96152.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep ecotype'] Length = 366 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 125/388 (32%), Positives = 219/388 (56%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R L+ L +ER++T+P+ +VL++ ++ L + + E+E+ ++ Sbjct: 1 MKFTISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L+DI+R + +G I F + G++ I G + L + +++P Sbjct: 61 GEFTEGEITVPAKKLFDIIRGISEGTDIHFSLD---GSKALIRAGRGRYTLSTLSANDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E FEL+ S LK L++ T F+MA +++RYYLNG+ E ++ VATDGH Sbjct: 118 NLEDWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ ++ +PS +I+PRK V EI R++S D S+KV + + + + Sbjct: 176 RLALCRLNYET---ALPSRQVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIF 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG FP+Y+ V+P + DKE+ + L++A R +I+S+ + + V+L+LSS +L + Sbjct: 233 TSKLVDGRFPDYRRVLPQNGDKEIIASKAVLKEAFSRAAILSNEKFRGVRLNLSSGELKI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y ++I FN YL+++++ + S D V L SN+S Sbjct: 293 TANNPEQEEAEEIVDVQYQGDDLEIGFNVAYLIDVLNALGS-----DGVKVSLSDSNASA 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D+ A YV+MPMR+ Sbjct: 348 LIEDDADDA---------ALYVIMPMRL 366 >gi|192362292|ref|YP_001980526.1| DNA polymerase III subunit beta [Cellvibrio japonicus Ueda107] gi|190688457|gb|ACE86135.1| DNA polymerase III, beta subunit [Cellvibrio japonicus Ueda107] Length = 367 Score = 211 bits (537), Expect = 1e-52, Method: Compositional matrix adjust. Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V R +L+ L ++ER+ T+PV +VL+Q L + + E+EI G + Sbjct: 1 MKFAVSREALLKPLQLVAGVVERRQTLPVLSNVLIQLEGDQLSLTGTDLEVEIIGRLTLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI R L DG+ I FF E + + G S F L + P S+FP Sbjct: 61 QAGQSGEITVPARKLVDICRSLPDGSTIEFFLEE---NRILVKSGRSRFTLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F A + +K L+ERT FAMA +++RYYLNG+ + + ++ L++ VATDGH Sbjct: 118 NVEDAPGNLRFSCAQAEVKRLIERTAFAMAQQDVRYYLNGMLWEVRQDHLRV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+ I + I+PRK V E+ R+L + V+V LS + I + + + Sbjct: 176 RMAMCTRAIAVNTDDVVQAILPRKGVLELSRLLDDSSAQVEVVLSANHIRVTSVDYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y+ V+P +K + + L+QA R +I+S+ + + V+L LS+ L + Sbjct: 236 KLVDGKFPEYERVLPRGGNKVVIGSRLELKQAFARTAILSNEKYRGVRLLLSNGVLTIVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN YL ++ + IS++ + + LD+++S++ Sbjct: 296 NNPEQEEAEEQVTVDYTGESLEIGFNVSYLQDVANVISNENI----KITLLDANSSALLE 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ DS YV+MPMR+ Sbjct: 352 EPENSDS----------LYVVMPMRL 367 >gi|90408443|ref|ZP_01216603.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3] gi|90310427|gb|EAS38552.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3] Length = 368 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 221/387 (57%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGH-ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 M+ ++ R L L A + + +P+ ++L+Q DG+L + + E+E+ I Sbjct: 1 MQFSISREAFLRPLQLVAGSVAGGRPALPIMANILIQIKDGILSLTGTDLEVELITQIHL 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 S G ITV A L +I R L D +I F +++ V + G S + L S P S+F Sbjct: 61 ESPSEEGEITVPARKLLNICRGLSDPCEIKFQVKDD---RVTVRSGRSRYLLSSLPASDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + F +A K L+E T FAMA++++RYYLNG++F + + L+ +VATDG Sbjct: 118 PNIESWKSLAEFNVAQKEFKKLIEFTQFAMASQDVRYYLNGMYFEASGDSLR--SVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + S+IVPRK V E++++L ++ +V + + ++ + I + + Sbjct: 176 HRLASCAIKLSTPIEEQ-SLIVPRKGVVELVKLLDNEQENVTIQIGKNNLRAIIGNFIFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ VIP + DKEL + +L+QA R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLVDGRFPDYRRVIPRNGDKELIASRESLKQAFTRAAILSNEKFRGVRLTLSKNLLQIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E +++ Y ++I FN Y+L++++ + S+++ ++ F SS S Sbjct: 295 ANNPEREEAEEYIDIDYQASDLEIGFNVSYVLDVLNTLKSEKI---KITF--SSSAHSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D D +A YVLMPMR+ Sbjct: 350 IESIDADD--------DALYVLMPMRL 368 >gi|190571329|ref|YP_001975687.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018725|ref|ZP_03334533.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357601|emb|CAQ55042.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995676|gb|EEB56316.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 383 Score = 211 bits (537), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 218/384 (56%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N I V + ++A G +++KA+ +I I ++ A+ Sbjct: 19 MRFSVSRASLLNTLSRVSGVVERRNAIDVLACINIKAQYGSIKLKATDLDISIFASLTAN 78 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ IS G++NF L + + FP Sbjct: 79 VSAEGEVKISAHTLHDIVKKLPTNLDVNFEMNNQ--GKLLISCGNANFSLPNVVSNNFPV 136 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E ++ Y F L S+ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 137 LEEGDHQYDFTLLSADLVDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 194 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK + E+L++L + + + LS+ +I + + Sbjct: 195 LSCIKRPKPEDINGEFGVIIPRKTIMELLKVLDDCNE-INIKLSDRKIKFTCGEYILISK 253 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP S DK++ V + L +DRVS++ S +I+++K SL + L + + Sbjct: 254 LIDGTFPDYKAVIPTSQDKQMIVESSKLASVIDRVSVVVSDKIKSIKFSLQENLLTLHSN 313 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A ES+ V Y+ M++ FN +YLL+++ ++++ F L NS+ I Sbjct: 314 SQECSDATESIEVDYDGALMEVGFNSRYLLDVL------SCIENKCKFSLSDGNSATIIT 367 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D S A Y++MPMR Sbjct: 368 DEDDPS---------ALYIVMPMR 382 >gi|146305044|ref|YP_001185509.1| DNA polymerase III subunit beta [Pseudomonas mendocina ymp] gi|145573245|gb|ABP82777.1| DNA polymerase III, beta subunit [Pseudomonas mendocina ymp] Length = 367 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D G ITV A L DI + L A I +++ ++ + G S F L + P ++F Sbjct: 61 -DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +E +F L + L+ L+ERT FAMA +++RYYLNG+ + L+ AVATDG Sbjct: 117 PTVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGMLR--AVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ ++ Q +IVPRK + E+ R+L+ +D+ V + L + I N + + Sbjct: 175 HRLAMCSMEAAIQQDGKHQVIVPRKGILELARLLTEQDAEVAIVLGQHHIRANTGEFTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L+L++ L + Sbjct: 235 SKLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLAAGLLKIQ 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + V Y ++I FN YLL+++ + + ++V L SNSS Sbjct: 295 ANNPEQEEAEEEIVVDYAGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 350 LQEADND---------DSAYVVMPMRL 367 >gi|126668222|ref|ZP_01739183.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17] gi|126627371|gb|EAZ98007.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17] Length = 351 Score = 211 bits (536), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 118/367 (32%), Positives = 201/367 (54%), Gaps = 20/367 (5%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYDIV 78 ++E+K T+PV +VLL A D L + + E+E+ I P +D G ITV A L DI Sbjct: 4 VVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARITPVHIDQPGRITVPARKLADIC 63 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 R L + + I ++ G +++ G S+F L + P FP+ ++E + EL L+ Sbjct: 64 RALGEESPIEL---DQQGDRLHLRCGKSHFTLATLPAEHFPNVEDEAESFRLELPQKELR 120 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 + + T FAMA +++RYYLNG+ + + ++ VATDGHRLA+A D+ + + Sbjct: 121 RMFDSTAFAMAQQDVRYYLNGLLLEVAADHVR--TVATDGHRLAMAHQDVETGCPEARQV 178 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 IVPRK V E+ R+L D+ V + + ++ + + S + + +LI+G+FP+Y VIP D Sbjct: 179 IVPRKGVLELARLLDDVDTPVTLVIGDNHLRATVGSYTFTSKLIEGKFPDYNRVIPRGGD 238 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318 K + + L+ + R I+S I+ V+L+L++++L + +NPD +A +++ V Y Sbjct: 239 KVVLADRITLKNTLQRAGILSHENIRGVRLNLAANELQVFANNPDQEQAEDALPVDYQGE 298 Query: 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY 378 + I FN YL+++++ + DD+V L + NSS I + Y Sbjct: 299 TLQIGFNVGYLIDVMNALD-----DDQVKVTLSNPNSSALIESQ---------TDARCLY 344 Query: 379 VLMPMRI 385 V+MPMR+ Sbjct: 345 VVMPMRL 351 >gi|152987905|ref|YP_001345398.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PA7] gi|150963063|gb|ABR85088.1| DNA polymerase III, beta subunit [Pseudomonas aeruginosa PA7] Length = 367 Score = 210 bits (535), Expect = 2e-52, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 30/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L I E + ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPSDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F +A S L+ L++RT FAMA +++RYYLNG+ +N L+ +VATDGH Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGALR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 RLA+ +D A++PS +IVPRK + E+ R+L+ +D V + L + I Sbjct: 176 RLAMCSLD-----AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGE 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L LS+ Sbjct: 231 FTFTSKLVDGKFPDYERVLPRGGDKLVIGDRQQLREAFSRTAILSNEKYRGIRLQLSNGL 290 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + +NP+ +A E + V YN ++I FN YLL+++ I + ++V F L SN Sbjct: 291 LKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSN 345 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS + D D ++ YV+MPMR+ Sbjct: 346 SSALVHEADND---------DSAYVVMPMRL 367 >gi|120596835|ref|YP_961409.1| DNA polymerase III subunit beta [Shewanella sp. W3-18-1] gi|146291113|ref|YP_001181537.1| DNA polymerase III subunit beta [Shewanella putrefaciens CN-32] gi|120556928|gb|ABM22855.1| DNA polymerase III, beta subunit [Shewanella sp. W3-18-1] gi|145562803|gb|ABP73738.1| DNA polymerase III, beta subunit [Shewanella putrefaciens CN-32] gi|319424419|gb|ADV52493.1| DNA polymerase III, beta subunit [Shewanella putrefaciens 200] Length = 366 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 122/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQAVVH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK++++ T F+MA +++RYYLNG+ F E L A+ATDGH Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFET--EGNMLRAIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L S D + +++ ++ I + + Sbjct: 176 RLALSHRVIDAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEIIDVDYNNQSLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|86147176|ref|ZP_01065492.1| DNA polymerase III subunit beta [Vibrio sp. MED222] gi|85835060|gb|EAQ53202.1| DNA polymerase III subunit beta [Vibrio sp. MED222] Length = 366 Score = 210 bits (535), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 115/386 (29%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+ + G + + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + + L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGH Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366 >gi|218708099|ref|YP_002415720.1| DNA polymerase III subunit beta [Vibrio splendidus LGP32] gi|218321118|emb|CAV17068.1| DNA polymerase III beta subunit [Vibrio splendidus LGP32] Length = 366 Score = 210 bits (534), Expect = 3e-52, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+ + G + + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + + L+ L+E+T F+MA +++RYYLNG+ F I E L +VATDGH Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSILRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEVLDVNFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366 >gi|294138803|ref|YP_003554781.1| DNA polymerase III subunit beta [Shewanella violacea DSS12] gi|293325272|dbj|BAJ00003.1| DNA polymerase III, beta subunit [Shewanella violacea DSS12] Length = 366 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 122/387 (31%), Positives = 218/387 (56%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G ITV A DIV+ L D ++ +EN L + G S F L + P E+ Sbjct: 61 GDVVEGRITVPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + LK+L++ T F+MA +++RYYLNG+ + L+ A+ATDG Sbjct: 117 PNVEAFQSDIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ I A + + +IVPRK V E+ R+ +D V +++ ++ I S ++ Sbjct: 175 HRLALSHRQIEATLPE-KQVIVPRKGVVELQRLFEGEDLDVTIAIGDNAIRATTSSAVLT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ L +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKVVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y+ P++I FN YLL++++N+ S D+V L NSS Sbjct: 294 ANNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ ++ YV+MPMR+ Sbjct: 349 IENHIEE---------DSMYVVMPMRL 366 >gi|119503574|ref|ZP_01625657.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2080] gi|119460636|gb|EAW41728.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2080] Length = 365 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 212/386 (54%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +++ L ++ER+ T+P+ +VLL L + + E+E+ G + Sbjct: 1 MKFSISREALIKPLNLVAGVVERRQTLPILSNVLLNLEGTQLSLTGTDLEVELIGRVEVE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G ITV A L DI + L D +QI F ++ + + G F L + P +EFP Sbjct: 61 AGGVDGDITVPARKLVDICKSLPDSSQIEFSVDS---GKAMVKAGRGRFTLSTLPATEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E + E+A SV+K L++RT FAMA +++RYYLNG+ + L++ VATDGH Sbjct: 118 SVDESAGDQTLEVAQSVVKRLIDRTAFAMAQQDVRYYLNGMLLELKAGRLRM--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + +II+PRK V E+ R+L + D S+++ + + I + + + Sbjct: 176 RLALCTANEAVSTGD-AAIIIPRKGVLELSRLLDT-DESIRLVIGSNHIRAANQQFTFTS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y+ V+P S DK + LRQA R +I+S+ + + V+L LS+D L +T Sbjct: 234 KLVDGKFPEYERVLPKSADKTVIGQRLELRQAFTRTAILSNEKYRGVRLKLSADTLDITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y +++ FN YLL+++ + D++ RL S+S+ Sbjct: 294 NNPEQEQAEEVVAVEYQGEELEVGFNVSYLLDVLSVLDGDQI-------RLSLSDSASSA 346 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D ++ YV+MPMR+ Sbjct: 347 LLEEADEG-------DSLYVVMPMRL 365 >gi|49086146|gb|AAT51331.1| PA0002 [synthetic construct] Length = 368 Score = 209 bits (533), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 30/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 M T++R +L+ L ++ER T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERLQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + I E + ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F +A S L+ L++RT FAMA +++RYYLNG+ +N L+ +VATDGH Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 RLA+ +D A++PS +IVPRK + E+ R+L+ +D V + L + I Sbjct: 176 RLAMCSLD-----AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGE 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L LS+ Sbjct: 231 FTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGL 290 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + +NP+ +A E + V YN ++I FN YLL+++ I + ++V F L SN Sbjct: 291 LKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSN 345 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS + D D ++ YV+MPMR+ Sbjct: 346 SSALVHEADND---------DSAYVVMPMRL 367 >gi|91791371|ref|YP_561022.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217] gi|91713373|gb|ABE53299.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217] Length = 366 Score = 209 bits (532), Expect = 5e-52, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 222/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + ++ + + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVKVSQDVISLTGTDLEVELVGQAAIH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G+ TV A L DIV+ L + +++ +++ + G S F L + P S++P Sbjct: 61 GDIVPGNTTVPAKKLLDIVKSLPEQSELHVEQQDNRWL---LRSGRSRFTLATLPASDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + VLK++++ T F+MA +++RYYLNG+ F LK A+ATDGH Sbjct: 118 NVEAFQAEIEFTIKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNTLK--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I + + +IVPRK V E+ R+L S D + +++ ES I ++ + Sbjct: 176 RLALSHRQIDVSLPE-KQVIVPRKGVVEMSRLLDSDDKDISIAIGESAIRAVTDTAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVVASRQQLKQALTRASILSNEKFRGVRIQLEPGLLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN YLL++++N++S++V + +D ++S++ Sbjct: 295 NNPEQEEAEEIIDVDYDSANLEIGFNVSYLLDVLNNLASEDV----RITLIDGNSSALIE 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 K++DS YV+MPMR+ Sbjct: 351 NHKEEDS----------MYVVMPMRL 366 >gi|119475237|ref|ZP_01615590.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2143] gi|119451440|gb|EAW32673.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2143] Length = 368 Score = 209 bits (532), Expect = 7e-52, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 212/387 (54%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 MK + R +L+ L ++ER+ T+P+ +VLL+ L I + E+E+ G + Sbjct: 1 MKFVISREALLKPLNLVAGVVERRQTLPILSNVLLELEGNQLSITGTDLEVELVGRVVLD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + G ITV A L DI + L DG++I F ++++ V I G S F L + S+F Sbjct: 61 QAPETGGEITVPARKLADICKSLPDGSEIEFTQDDQ---RVIIRSGRSRFTLSTLAASDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +E F + LK L++RT FAMA +++RYYLNG+ + + L++ VATDG Sbjct: 118 PNVEESPGSQDFTVKQGDLKRLIDRTSFAMAQQDVRYYLNGMLWEVQSGQLRV--VATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + + +I+PRK V E+ R++ + V++ + + I + + + Sbjct: 176 HRLALCTLATSIETTENLQVILPRKGVVELARLMMKESDDVRLVIGSNHIRATTDEYTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG+FP+Y V+P ++ K + + LRQA R +I+S+ + + V+L LS+D L + Sbjct: 236 SKLVDGKFPDYDRVLPKASTKTIFGSRDELRQAFSRTAILSNEKYRGVRLLLSNDTLQIV 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y ++I FN YLL+++ + + + L +NSS Sbjct: 296 ANNPEQEEAEEIVSVDYQGESLEIGFNVSYLLDVLGVLKG-----ETIKLSLADANSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + ++ YV+MPMR+ Sbjct: 351 L---------EESEEGDSMYVVMPMRL 368 >gi|226326919|ref|ZP_03802437.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198] gi|225204756|gb|EEG87110.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198] Length = 367 Score = 209 bits (531), Expect = 8e-52, Method: Compositional matrix adjust. Identities = 129/388 (33%), Positives = 215/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LL+ + L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMVARVNLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 G+ TV A +DI R L +GA+IS EL G + + G S F L + P S+F Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+ +L VATDG Sbjct: 117 PNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237 HRLAV +DI Q S+IVPRK V E++R+L +SS+++ + + I ++ Sbjct: 175 HRLAVCSMDI-GQSLPGHSVIVPRKGVIELMRLLDGGGESSLQLQIGSNNIRAHVGDFIF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG FP+Y+ V+P + K + C L+QA R +I+S+ + + V+++L+S +L + Sbjct: 234 TSKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTSGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M+I FN YLL++++ + +EV L + SSV Sbjct: 294 TANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKC-----EEVKLLLTDAVSSV 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 349 QVENVASSA---------AAYVVMPMRL 367 >gi|308047724|ref|YP_003911290.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799] gi|307629914|gb|ADN74216.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799] Length = 366 Score = 208 bits (530), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 123/386 (31%), Positives = 205/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R +L+ L +ER++ +P+ +VLL+ + LL++ + E+E+ G + Sbjct: 1 MQFVINRETLLKPLQLVSGAVERRHNLPILANVLLEVSGNLLKVTGTDLEVELIGQVEVE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A DI + L D A++ +++ + I G S F L + P EFP Sbjct: 61 GDIQPGRTTVPARKFLDICKSLPDQAELRIEQQD---NRLLIKSGRSRFSLSTLPADEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L VLK+L+E T F+MA +++RYYLNG+ F L+ VATDGH Sbjct: 118 EIGDWKGELQFTLPQGVLKSLIEATQFSMAHQDVRYYLNGMLFETEGNVLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV+ I A + + +IVPRK V E+ R+ + + + + + ES I + Sbjct: 176 RLAVSHRVIEASLPEK-QVIVPRKGVIELSRLFEDEQAEITLCIGESSIRAVTRDAIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + LRQA R SI+S+ + + V+L L +D+L +T Sbjct: 235 KLVDGRFPDYRRVLPKDGDKVVVAERDALRQAFARASILSNEKFRGVRLLLENDRLTITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E +++ Y ++I FN Y+L++++ + + V L +NSS Sbjct: 295 NNPEQEEAEEVLDLAYPYTSLEIGFNVSYVLDVLNALKQ-----ENVKMVLGEANSSALF 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + YV+MPMR+ Sbjct: 350 ENADNDE---------SLYVVMPMRL 366 >gi|28197947|ref|NP_778261.1| DNA polymerase III subunit beta [Xylella fastidiosa Temecula1] gi|182680574|ref|YP_001828734.1| DNA polymerase III subunit beta [Xylella fastidiosa M23] gi|28056007|gb|AAO27910.1| DNA polymerase III beta chain [Xylella fastidiosa Temecula1] gi|182630684|gb|ACB91460.1| DNA polymerase III, beta subunit [Xylella fastidiosa M23] gi|307579028|gb|ADN62997.1| DNA polymerase III subunit beta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 366 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ L H ++ER+ T + ++L++ N+ L + + E+E+ Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS Sbjct: 61 DPESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHR Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ II+PRK V E+ R+L D +++ ++ + I + ++ + + Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V LR A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + ++ D V +L SNSS IR Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + N + V+MP+R+ Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366 >gi|119947309|ref|YP_944989.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37] gi|119865913|gb|ABM05390.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37] Length = 367 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 119/363 (32%), Positives = 211/363 (58%), Gaps = 21/363 (5%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82 + +P+ ++L++ D L + + E+E+ I + G ITV A L DI R L Sbjct: 25 RPALPIMANILIEVKDNQLSLTGTDLEVELIAVIALENPSENGVITVPARKLLDICRGLS 84 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 + +I F + E +V I G S + L S P +FP+ + + + + + K L+E Sbjct: 85 EPCEIKFQVKEE---KVTIRSGRSRYLLSSLPAVDFPNIESWQSLVELTVPQAEFKKLIE 141 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 T FAMA++++RYYLNG++F +E+ L+ +VATDGHRLA + + Q+ + S+IVPR Sbjct: 142 FTQFAMASQDVRYYLNGMYFEASEQTLR--SVATDGHRLASCSIKL-NQVIEQQSVIVPR 198 Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262 K V E++++L + ++V + + ++ + I+ + +L+DG FP+Y+ VIP + DKEL Sbjct: 199 KGVIELVKLLDNDQANVTIQIGQNNLRAVIDGFIFTTKLVDGRFPDYRRVIPKNGDKELI 258 Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 N +L+QA R +I+S+ + + V+L LS + L +T +NP+ +A E ++V Y+ ++I Sbjct: 259 SNRESLKQAFSRAAILSNEKFRGVRLILSENLLQITANNPEREEAEEYIDVDYHSANLEI 318 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 FN Y+L++++ + S++V ++ F +S+ S I D D ++ YVLMP Sbjct: 319 GFNVSYVLDVLNTLKSEQV---KITF--SNSDHSALIESIDSD---------DSLYVLMP 364 Query: 383 MRI 385 MR+ Sbjct: 365 MRL 367 >gi|77456230|ref|YP_345735.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf0-1] gi|77380233|gb|ABA71746.1| DNA polymerase III, beta chain [Pseudomonas fluorescens Pf0-1] Length = 367 Score = 208 bits (529), Expect = 1e-51, Method: Compositional matrix adjust. Identities = 128/391 (32%), Positives = 217/391 (55%), Gaps = 30/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL + L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA GSITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAE---TGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ ++ AVAT Sbjct: 115 DFPTVEEGPGSLTTSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGVIR--AVAT 172 Query: 177 DGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DGHRLA+ + DI Q +IVPRK + E+ R+L+ D +V + L + I Sbjct: 173 DGHRLAMCSMQADIGQQ--DRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGE 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S + Sbjct: 231 FTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQ 290 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SN Sbjct: 291 LKIQANNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSN 345 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS ++ D D ++ YV+MPMR+ Sbjct: 346 SSALVQESDND---------DSAYVVMPMRL 367 >gi|163759228|ref|ZP_02166314.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica DFL-43] gi|162283632|gb|EDQ33917.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica DFL-43] Length = 385 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 130/397 (32%), Positives = 221/397 (55%), Gaps = 32/397 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGLLEIKASGPEIEITGAIPAS 60 +T R+ +L + A +ER+NTIPV ++LL+ A+DGL + SG ++++ + Sbjct: 7 LTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGL---RVSGTDLDVMTTVATG 63 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +D +T+ AHLL+DI+RKL D A++S + ++ ++ G S F LQ+ P + Sbjct: 64 LDAEPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDGS--GQMTLTSGRSRFNLQTLPGA 121 Query: 117 EFPSTKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P +E+ +FE+ ++ + FA++TEE RYYLNG++ H D +L VA Sbjct: 122 DWPRLQEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMH--AIDNRLVTVA 179 Query: 176 TDGHRLA----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK--VSLSESRIH 229 TDGHRLA A V ++ MP II+PRK VG + + L++ +++SE+ I Sbjct: 180 TDGHRLARAVYSAAVGVMPAADAMPGIIIPRKTVGLVAKALAAAAKDATLAIAVSENMIS 239 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + ++ +LIDG FP+Y+ VIP +N R + L QA +RVSI+SS R +AVK++ Sbjct: 240 FELGATRIASKLIDGTFPDYERVIPIANPNSWRFDVAALLQATERVSIISSERGRAVKMA 299 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + +TV NPD G+ + ++V + ++I FN KYL +++ ++S V Sbjct: 300 WGRESIDLTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHMSKSGSV------ 353 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++ D D+++ +VLMPMR+ Sbjct: 354 HLNTGGDPARFEPVHAD-----DDEIAMTFVLMPMRV 385 >gi|42520873|ref|NP_966788.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410613|gb|AAS14722.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 365 Score = 207 bits (528), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 217/384 (56%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N I V + ++A G +++ A+ +I + ++ A+ Sbjct: 1 MRFSVSRTSLLNTLSRVSGVVERRNAIDVFACINIKAQHGSIKLMATDLDISMFASLAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ Sbjct: 61 VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 119 LEEDNYKHDFTLLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L+IL + +KV LS+ +I + + Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKFTCGEYILISK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FPNY+ VIP S DK + + L +DRVS++ S +++++K SL L + + Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A ES+ V YNE P++I FN +YLL+++ + ++ F L NS+ I Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D S A YV+MPMR Sbjct: 350 DEDDSS---------ALYVVMPMR 364 >gi|71275533|ref|ZP_00651819.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon] gi|71900180|ref|ZP_00682320.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1] gi|170729253|ref|YP_001774686.1| DNA polymerase III subunit beta [Xylella fastidiosa M12] gi|71163833|gb|EAO13549.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon] gi|71730069|gb|EAO32160.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1] gi|167964046|gb|ACA11056.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 366 Score = 207 bits (527), Expect = 2e-51, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ L H ++ER+ T + ++L++ N+ L + + E+E+ Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS Sbjct: 61 DAESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHR Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ II+PRK V E+ R+L D +++ ++ + I + ++ + + Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V LR A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + ++ D V +L SNSS IR Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + N + V+MP+R+ Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366 >gi|254784275|ref|YP_003071703.1| DNA polymerase III subunit beta [Teredinibacter turnerae T7901] gi|237687276|gb|ACR14540.1| DNA polymerase III, beta subunit [Teredinibacter turnerae T7901] Length = 367 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 212/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TV R +++ L ++ER+ T+ V +VL++ L + + E+EI G + Sbjct: 1 MKFTVSREALIKPLQLVAGVVERRQTMAVLANVLMEIEGDQLSLTGTDLEVEIIGRVQLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S G ITV A DI R L D + I F +++ T + G S F L + P +EFP Sbjct: 61 SAPGNGEITVPAKKFLDICRSLPDKSVIEFSLQDQKAT---VKSGKSRFTLSTLPANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + +K L++RT FAMA +++RYYLNG+ + + ++++ VATDGH Sbjct: 118 AVEQGSNDINISCEQKEIKRLIDRTAFAMAQQDVRYYLNGMLWELRPGEIRV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + ++++ I+PRK V E+ R+L+ + V+VSL S + + + + Sbjct: 176 RLAVCSRPVDVDVSEIKQAILPRKGVIELARLLNDSEDGVEVSLGSSHMRASTAEYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + N ++L+QA R SI+S+ + + V+L L + L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKVVLGNRSDLKQAFARTSILSNEKYRGVRLELVAGSLTIIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSVF 358 +NP+ +A + + V YN +++ FN YL ++ + V+D E + L SNSS Sbjct: 296 NNPEQEEAQDQVEVDYNGDALEVGFNVSYLQDVAN------VLDSENIKITLSDSNSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + N D+ YV+MPMR+ Sbjct: 350 L-----EEPENSDSS----YVVMPMRL 367 >gi|254363201|ref|ZP_04979250.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica PHL213] gi|153095095|gb|EDN75646.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica PHL213] Length = 367 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 217/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+IT+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI + L D + IS F+E++ I G S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDK----AIIKAGRSKFSLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + ++ Q S+IVPRKAV E+ R+++S D +V++ + S I + + + Sbjct: 175 GHRLAVCTM-VLNQELLTHSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS++ L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y+ M++ FN Y+L++++ + V F L S+SS Sbjct: 294 TANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC-----QRVRFSLVDSSSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D S A YV+MPMR+ Sbjct: 349 LIEDCDNSS---------AEYVIMPMRL 367 >gi|261493281|ref|ZP_05989808.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496475|ref|ZP_05992855.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307678|gb|EEY09001.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311131|gb|EEY12307.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 369 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 217/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+IT+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 3 MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 62 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI + L D + IS F+E++ I G S F L + P S+ Sbjct: 63 QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDK----AIIKAGRSKFSLATLPASD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 119 YPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + ++ Q S+IVPRKAV E+ R+++S D +V++ + S I + + + Sbjct: 177 GHRLAVCTM-VLNQELLTHSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVF 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS++ L + Sbjct: 236 TSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y+ M++ FN Y+L++++ + V F L S+SS Sbjct: 296 TANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC-----QRVRFSLVDSSSSC 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D S A YV+MPMR+ Sbjct: 351 LIEDCDNSS---------AEYVIMPMRL 369 >gi|225630799|ref|YP_002727590.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi] gi|225592780|gb|ACN95799.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi] Length = 385 Score = 207 bits (526), Expect = 3e-51, Method: Compositional matrix adjust. Identities = 129/384 (33%), Positives = 218/384 (56%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N+I V + ++A G +++ A+ +I + ++ A+ Sbjct: 21 MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 80 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ Sbjct: 81 VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 138 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 139 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 196 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L+IL + +KV LS+ +I L + + Sbjct: 197 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 255 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FPNY+ VIP S DK + + L +DRVS++ S +++++K SL L + + Sbjct: 256 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 315 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A ES+ V YNE P++I FN +YLL+++ + ++ F L NS+ I Sbjct: 316 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIIT 369 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D S YV+MPMR Sbjct: 370 DEDDSS---------VLYVVMPMR 384 >gi|56417078|ref|YP_154152.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries] gi|222475444|ref|YP_002563861.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Florida] gi|255003430|ref|ZP_05278394.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Puerto Rico] gi|255004549|ref|ZP_05279350.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Virginia] gi|56388310|gb|AAV86897.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries] gi|222419582|gb|ACM49605.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Florida] Length = 379 Score = 206 bits (525), Expect = 4e-51, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 218/389 (56%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R D+L+ L + +IER+N+I V V ++A DG++E+ ++ +I I + AS Sbjct: 12 LECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNAS 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + SA LLYDIVRKL + F + L E G++ F+L +FP Sbjct: 72 VVHKGVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVEC----GNAKFFLHVVAPEKFP 127 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F++ S + L+ +T F+M+ EE RY L G++ H+ E+ LC VATDGH Sbjct: 128 AIEGGEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGH 185 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSS--VKVSLSESRIHLNIESLS 236 RL++A+V+ + +IVPRK V E+L+I+ D+S V VS+S+ +I + Sbjct: 186 RLSLAKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYF 245 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M +++DG FP+Y ++IP + ++ +L AVDRVS++ +++A+KLS +S +L Sbjct: 246 MVSKVVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLT 305 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + D G A E + V Y + I N +YL+E++ + EVVF+ N++ Sbjct: 306 LSSASSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKG----ACEVVFQ--DGNTA 359 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I+ K+ + +++MPMRI Sbjct: 360 VLIQDKEPG---------GSMHIIMPMRI 379 >gi|269958514|ref|YP_003328301.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel] gi|269848343|gb|ACZ48987.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel] Length = 379 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 128/389 (32%), Positives = 218/389 (56%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R D+L+ L + +IER+N+I V V ++A DG++E+ ++ +I I + AS Sbjct: 12 LECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNAS 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + SA LLYDIVRKL + F + L E G++ F+L +FP Sbjct: 72 VVHKGVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVEC----GNAKFFLHVVAPEKFP 127 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F++ S + L+ +T F+M+ EE RY L G++ H+ E+ LC VATDGH Sbjct: 128 AIEGGEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGH 185 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSS--VKVSLSESRIHLNIESLS 236 RL++A+V+ + +IVPRK V E+L+I+ D+S V VS+S+ +I + Sbjct: 186 RLSLAKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYF 245 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M +++DG FP+Y ++IP + ++ +L AVDRVS++ +++A+KLS +S +L Sbjct: 246 MVSKVVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLT 305 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + D G A E + V Y + I N +YL+E++ + EVVF+ N++ Sbjct: 306 LSSASSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKG----ACEVVFQ--DGNTA 359 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I+ K+ + +++MPMRI Sbjct: 360 VLIQDKEPG---------GSMHIIMPMRI 379 >gi|330447268|ref|ZP_08310918.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491459|dbj|GAA05415.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 366 Score = 206 bits (524), Expect = 5e-51, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALD 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++TV + DI R L A IS E G V I G S + L + P ++FP Sbjct: 61 GEFESGAVTVPSRKFLDICRGLPSSASISVSYE---GDRVLIRSGRSRYTLTTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L ++ L++ T F+MA +++RYYLNG+ F + + L+ +VATDGH Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV ++ ++ IIVPRK V E++R+ + ++ V + + S I + + + Sbjct: 176 RMAVCAINTGHELPT-KQIIVPRKGVLELVRLFDNPEAEVNIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P ++ K + C +R A R +I+S+ + + V+++LS+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEIRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+ I Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DS N++ A YV+MP+R+ Sbjct: 350 ----EDSNNDE-----AMYVVMPIRL 366 >gi|332991510|gb|AEF01565.1| DNA polymerase III subunit beta [Alteromonas sp. SN2] Length = 366 Score = 206 bits (524), Expect = 6e-51, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R L+ L +ER++T+P+ +VL++ ++ L + + E+E+ ++ Sbjct: 1 MKFSISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L+DI+R + +G I F + G + I G + L + +++P Sbjct: 61 GEFTEGEITVPAKKLFDIIRGISEGTDIHFSID---GNKALIKAGRGRYTLSTLSANDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E FE+ S +K L++ T F+MA +++RYYLNG+ E ++ VATDGH Sbjct: 118 NLEDWEGEVEFEITCSDMKRLIDSTSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +I+PRK V EI R+++ D S+KV + + + + + Sbjct: 176 RLALCRLSYETTLPAR-QVIIPRKGVLEISRLITEDDKSLKVQIGANHLRIFSNDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DKE+ + L+ A R +I+S+ + + V+L+LSS +L +T Sbjct: 235 KLVDGRFPDYRRVLPQDGDKEIIASKAVLKDAFSRAAILSNEKFRGVRLNLSSGELKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN YL+++++++ S D+V L SN+S I Sbjct: 295 NNPEQEEAEEIVDVNYQGDDLEIGFNVAYLIDVLNSLGS-----DDVKISLSDSNASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ A YV+MPMR+ Sbjct: 350 EDAADDA---------ALYVIMPMRL 366 >gi|312958104|ref|ZP_07772627.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6] gi|311287535|gb|EFQ66093.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6] Length = 367 Score = 206 bits (523), Expect = 7e-51, Method: Compositional matrix adjust. Identities = 124/389 (31%), Positives = 214/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++E ++ AVAT Sbjct: 115 DFPTVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + +IVPRK + E+ R+L+ D +V + L + I + Sbjct: 173 DGHRLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|90581123|ref|ZP_01236922.1| DNA polymerase III subunit beta [Vibrio angustum S14] gi|90437644|gb|EAS62836.1| DNA polymerase III subunit beta [Vibrio angustum S14] Length = 366 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ DG L + + E+E+ + Sbjct: 1 MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L A IS E G V I S + L + P ++FP Sbjct: 61 GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L ++ L++ T F+MA +++RYYLNG+ F + + L+ +VATDGH Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D ++ IIVPRK V E++R+ + +S V + + S I + + + Sbjct: 176 RMAVCAIDTGHELPT-KQIIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P ++ K + C +R A R +I+S+ + + V+++LS+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+ I Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ N++ A YV+MP+R+ Sbjct: 350 ----EDATNDE-----AMYVVMPIRL 366 >gi|104779318|ref|YP_605816.1| DNA polymerase III subunit beta [Pseudomonas entomophila L48] gi|95108305|emb|CAK12999.1| DNA polymerase III, beta chain [Pseudomonas entomophila L48] Length = 367 Score = 205 bits (522), Expect = 8e-51, Method: Compositional matrix adjust. Identities = 123/389 (31%), Positives = 213/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L A I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPSDALIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + +L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSPGTLR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + A +IVPRK + E+ R+L+ + +V + L + I + Sbjct: 173 DGHRLALCAMQAPIDQADRHQVIVPRKGILELARLLTDPEGTVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVDYNGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D ++ YV+MPMR+ Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367 >gi|89074701|ref|ZP_01161159.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34] gi|89049465|gb|EAR55026.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34] Length = 366 Score = 205 bits (521), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ DG L + + E+E+ + Sbjct: 1 MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVVLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L A IS E G V I S + L + P ++FP Sbjct: 61 GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + +F L ++ L++ T F+MA +++RYYLNG+ F + + L+ +VATDGH Sbjct: 118 NIEDWQSEVAFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D ++ +IVPRK V E++R+ + +S V + + S I + + + Sbjct: 176 RMAVCAIDTGHELPT-KQVIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P ++ K + C +R A R +I+S+ + + V+++LS+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+ I Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D+ N++ A YV+MP+R+ Sbjct: 350 ----EDATNDE-----AMYVVMPIRL 366 >gi|146280399|ref|YP_001170552.1| DNA polymerase III subunit beta [Pseudomonas stutzeri A1501] gi|145568604|gb|ABP77710.1| DNA polymerase III, beta subunit [Pseudomonas stutzeri A1501] gi|327478614|gb|AEA81924.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 4166] Length = 367 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 214/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + A Sbjct: 1 MHFSIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRV-AL 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D G ITV A L DI + L A IS +++ +V I G S F L + P ++F Sbjct: 60 EDAAEPGEITVPARKLMDICKSLPSDALISIRLDDQ---KVVIKSGRSRFTLSTLPANDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +E SF +A L+ L+ER+ FAMA +++RYYLNG+ ++ L+ AVATDG Sbjct: 117 PTVEEGPGSLSFTVAQGKLRKLIERSAFAMAQQDVRYYLNGMLIEVSSGMLR--AVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + +IVPRK + E+ R+L+ +D+ V + L + I + + Sbjct: 175 HRLAMCSMQAGIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L S L + Sbjct: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKIQ 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L +NSS Sbjct: 295 ANNPEQEEAEEEVAVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDANSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 350 VQEFDND---------DSAYVVMPMRL 367 >gi|149925375|ref|ZP_01913639.1| DNA polymerase III subunit beta [Limnobacter sp. MED105] gi|149825492|gb|EDM84700.1| DNA polymerase III subunit beta [Limnobacter sp. MED105] Length = 368 Score = 204 bits (520), Expect = 1e-50, Method: Compositional matrix adjust. Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 26/370 (7%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---SITVSAHLLYD 76 I+ER+NT+PV ++LL+ GLL + +S E++I + A V G + TV+A D Sbjct: 21 IVERRNTLPVLANILLKKQGGLLTLLSSDIEMQIETS--AEVGAGGEDTATTVAARKFLD 78 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASS 135 I+R L + + + + G ++++ S F LQ+ P +FP +E +E+V L Sbjct: 79 ILRSLPEDSDVMVKLD---GKKMSVQAKKSRFALQTLPAEDFPLVQEPKEWVTQISLPQK 135 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 +LKNL+ HF+MA +++RYYLNG+ I E + AVATDGHRLA A+ AK Sbjct: 136 MLKNLLGMVHFSMAQQDLRYYLNGVLLVI--ESACVRAVATDGHRLAYADAPGQGGTAKH 193 Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 +I+PRK V E+ R+L+ D +V + L+ ++ +++ +L++G+FP+YQ VIP Sbjct: 194 -EVIIPRKTVLELSRLLNDTDDTVTIDLASNQAKFTFSDITLITKLVEGKFPDYQRVIPK 252 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 ++ + + L ++ R SI++S + + ++ L ++ L + +N D +A + M V Y Sbjct: 253 THQHHVVIARDALLHSLQRASILTSDKFRGIRWVLGANGLTIVANNSDQEEARDEMEVEY 312 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 +D+ FN YLL++++N+ S + V F L NSS + KD D K Sbjct: 313 QGPEIDVGFNVNYLLDVLNNLKS-----ETVQFTLQDGNSSALVTTPGKD-----DFK-- 360 Query: 376 AFYVLMPMRI 385 YV+MPMRI Sbjct: 361 --YVVMPMRI 368 >gi|15836607|ref|NP_297295.1| DNA polymerase III subunit beta [Xylella fastidiosa 9a5c] gi|9104762|gb|AAF82815.1|AE003855_2 DNA polymerase III, beta chain [Xylella fastidiosa 9a5c] Length = 366 Score = 204 bits (520), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 209/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ L H ++ER+ T + ++L++ N+ L + + E+E+ Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS Sbjct: 61 DAESGEITIPARKIYEIVRALPDSSQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHR Sbjct: 118 IDKIEVTERIIIPEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ II+PRK V E+ R+L D +++ ++ + I + ++ + + Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V LR A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + ++ D V +L SNSS IR Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + N + V+MP+R+ Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366 >gi|255320701|ref|ZP_05361878.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SK82] gi|262380668|ref|ZP_06073821.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SH164] gi|255302317|gb|EET81557.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SK82] gi|262297616|gb|EEY85532.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SH164] Length = 382 Score = 204 bits (519), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 123/402 (30%), Positives = 215/402 (53%), Gaps = 37/402 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +QA+ L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLS 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L DI + L A I E++ + G+S F L + P Sbjct: 61 EGACLQPGETTVPARKLMDICKSLPSAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P + ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLNHDNSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDETQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TDGHRLA+ E + + A P IVPRKAV E+ R+LS +D + + + +++ I++ Sbjct: 176 TDGHRLALCET-LASSTASQPVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQT 234 Query: 235 LS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 S + +LIDG+FP+Y+ VIP DK +++ +Q++ RV+I+S+ ++ Sbjct: 235 PSRDKEQGEITVRFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKL 294 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + V L+ ++D L + +NP+ +AIE + + YN P+++ FN +YLLE+++ + Sbjct: 295 RGVFLNFNADSLQLRANNPEQDEAIEDLAIQYNNSPLEMSFNAQYLLEVLNVLDG----- 349 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+VV + +N SV ++ + + YV+MPMR+ Sbjct: 350 DDVVMTMTEANQSVLVQDPAQQDQT---------YVVMPMRV 382 >gi|262371172|ref|ZP_06064493.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] gi|262313902|gb|EEY94948.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] Length = 382 Score = 204 bits (518), Expect = 2e-50, Method: Compositional matrix adjust. Identities = 121/401 (30%), Positives = 207/401 (51%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q L I S E+E+ + P + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKVQVTQASLTITGSDLEVELVASTPLT 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L DI + L A I E++ + G+S F L + P Sbjct: 61 EGACLQAGETTVPARKLMDICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E + LK L E+T FAMA +++R+YL G I+ L+ AV Sbjct: 118 DYPLLTTENTQGTQVAVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDNNQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E + ++ IVPRKAVGE+ R+LS +D + + + +++ I Sbjct: 176 TDGHRLALCETVASSNATQLIQAIVPRKAVGELQRLLSIEDEQLALLIGRELLNVTISIA 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + + +Q++ RVSI+S+ +++ Sbjct: 236 SRDKEQGDTMVRFTTKLIDGKFPDYRRVIPRGGDKNVLIAHDVFKQSLQRVSILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ ++D L + +NP+ +A+E + + YN PM++ FN +Y+LE++ + D Sbjct: 296 GVFLNFAADTLQLRANNPEQDEAVEDLAIQYNNAPMEMSFNAQYILEVLGALDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVSMTMTEANQSVLVQDPAHQDQT---------YVVMPMRV 382 >gi|229587580|ref|YP_002869699.1| DNA polymerase III subunit beta [Pseudomonas fluorescens SBW25] gi|229359446|emb|CAY46287.1| DNA polymerase III, beta chain [Pseudomonas fluorescens SBW25] Length = 367 Score = 204 bits (518), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 214/389 (55%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I K +E ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDI-KVDE--AKLVVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++E ++ AVAT Sbjct: 115 DFPTVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + +IVPRK + E+ R+L+ + +V + L + I + Sbjct: 173 DGHRLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEVGVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|330806659|ref|YP_004351121.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374767|gb|AEA66117.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 367 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 124/389 (31%), Positives = 213/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA GSITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAD---PGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ ++ AVAT Sbjct: 115 DFPTVEEGPGSLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + +IVPRK + E+ R+L+ D +V + L + I + Sbjct: 173 DGHRLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|118496617|ref|YP_897667.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. novicida U112] gi|194323923|ref|ZP_03057698.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. novicida FTE] gi|254372004|ref|ZP_04987497.1| hypothetical protein FTCG_01143 [Francisella tularensis subsp. novicida GA99-3549] gi|254375146|ref|ZP_04990626.1| DNA polymerase III [Francisella novicida GA99-3548] gi|118422523|gb|ABK88913.1| DNA polymerase III, beta subunit [Francisella novicida U112] gi|151569735|gb|EDN35389.1| hypothetical protein FTCG_01143 [Francisella novicida GA99-3549] gi|151572864|gb|EDN38518.1| DNA polymerase III [Francisella novicida GA99-3548] gi|194321820|gb|EDX19303.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. novicida FTE] gi|328676080|gb|AEB26950.1| DNA polymerase III beta subunit [Francisella cf. novicida Fx1] Length = 367 Score = 203 bits (517), Expect = 3e-50, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 223/389 (57%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L + + I F + NE +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDF-RVNE--NKVTIVSNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +NPD KA + + V YN+ PM+ICFNYKYLL+II N+ S+E + LD+ N S Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDII-NVLSEETMS----IYLDNPNMS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367 >gi|262281563|ref|ZP_06059342.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] gi|262257022|gb|EEY75761.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] Length = 382 Score = 203 bits (517), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/402 (30%), Positives = 213/402 (52%), Gaps = 37/402 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLS 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E+ + A++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEITASSTSAQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + ++ +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGNITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD- 343 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLLE++ V+D Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLEVLG------VLDG 349 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+V + +N SV ++ + YV+MPMR+ Sbjct: 350 DDVNMSMSEANQSVLVQDPAHSDQT---------YVVMPMRV 382 >gi|157959832|ref|YP_001499866.1| DNA polymerase III subunit beta [Shewanella pealeana ATCC 700345] gi|157844832|gb|ABV85331.1| DNA polymerase III, beta subunit [Shewanella pealeana ATCC 700345] Length = 366 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 215/389 (55%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ ++ L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSNHSLKLTGTDLEVELVGEVQLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ G TV A DIV+ L D ++ +EN L + G S F L + P E+ Sbjct: 61 GEILEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRLL----LRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E F L +K+L++ T F+MA +++RYYLNG+ E L A+ATDG Sbjct: 117 PNVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ I A + + +IVPRK V E++R + D V +++ ++ I + + Sbjct: 175 HRLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKVVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 I DN + ++ YV+MPMR+ Sbjct: 349 I-----------DNHIEQDSMYVVMPMRL 366 >gi|187930915|ref|YP_001890899.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187711824|gb|ACD30121.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 367 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 223/389 (57%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L + + I F + NE +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITEAIIDSKVLDSASKSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +NPD KA + + V YN+ PM+ICFNYKYLL+II N+ S+E + LD+ N S Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDII-NVLSEETMS----IYLDNPNMS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367 >gi|331007622|ref|ZP_08330764.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989] gi|330418562|gb|EGG93086.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989] Length = 369 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 216/389 (55%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L L ++ER+ T+PV +VL+ + L + + E+EI +P Sbjct: 1 MKFSVSREALLVPLQLVAGVVERRQTLPVLANVLVVLENETLSLTGTDLEVEIVARLPLE 60 Query: 61 --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V G IT+ A L DI R L DGA + F + + +V + G S F L + P ++F Sbjct: 61 NPVQDTGEITIPAKKLVDICRSLPDGATVEFILQED--QKVIVKSGRSRFTLATLPSNDF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PST++ E F + S++K L++RT FAMA +++RYYLNG+ + + E +L VATDG Sbjct: 119 PSTEKSEGDLQFSCSQSIIKRLIDRTAFAMAQQDVRYYLNGMLWEV--EGNRLRCVATDG 176 Query: 179 HRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRLA V E+DI + + I+PRK V E+ R+L+ +++ + ++L I ++ + + Sbjct: 177 HRLAMCVRELDI--DVPEKSQAILPRKGVIELSRLLNDQEAQIDLTLGTHHIRVDTPNYT 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P + N T L+QA R +I+S+ + + V+L+ + L Sbjct: 235 FTSKLVDGKFPDYERVLPKGGTNVVLGNRTELKQAFARTAILSNEKYRGVRLNFTEGLLN 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E + + Y ++I FN YL +I +++ + V L +NSS Sbjct: 295 IVANNPEQEEAEEQVVIDYKGDEIEIGFNVSYLQDITSVLNT-----ENVKITLSDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ ++ YV+MPMR+ Sbjct: 350 ALLEEPEEG---------DSVYVVMPMRL 369 >gi|56707189|ref|YP_169085.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|89255451|ref|YP_512812.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica LVS] gi|110669659|ref|YP_666216.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis FSC198] gi|115313983|ref|YP_762706.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134301171|ref|YP_001121139.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|156501372|ref|YP_001427436.1| DNA polymerase III, subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|208780098|ref|ZP_03247441.1| DNA polymerase III, beta subunit [Francisella novicida FTG] gi|254366861|ref|ZP_04982899.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica 257] gi|254368433|ref|ZP_04984450.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|254371403|ref|ZP_04987404.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|56603681|emb|CAG44635.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|89143282|emb|CAJ78443.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica LVS] gi|110319992|emb|CAL08018.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis FSC198] gi|115128882|gb|ABI82069.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134048948|gb|ABO46019.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134252689|gb|EBA51783.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica 257] gi|151569642|gb|EDN35296.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|156251975|gb|ABU60481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121327|gb|EDO65528.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|208744102|gb|EDZ90403.1| DNA polymerase III, beta subunit [Francisella novicida FTG] gi|282158288|gb|ADA77679.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis NE061598] Length = 367 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 126/389 (32%), Positives = 223/389 (57%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L + + I F + NE +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +NPD KA + + V YN+ PM+ICFNYKYLL+II N+ S+E + LD+ N S Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDII-NVLSEETMS----IYLDNPNMS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367 >gi|301154704|emb|CBW14167.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae T3T1] Length = 366 Score = 203 bits (516), Expect = 4e-50, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D +I+ E + + G S F L + P E+P Sbjct: 61 SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAI---VESGRSKFNLTTLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +++ Q + S+I+PRK V E+ R+L S D ++ + + + +++ + + Sbjct: 176 RLAVCTIEL-DQDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + N L+QA R SI+S+ R+++V+L+LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + +V RL ++SS I Sbjct: 295 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKC-----QQVRIRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N++D +A YV+MPMR+ Sbjct: 350 -------ENSED--ASAEYVIMPMRL 366 >gi|325577774|ref|ZP_08148049.1| DNA-directed DNA polymerase III beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160519|gb|EGC72645.1| DNA-directed DNA polymerase III beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 367 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 124/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 2 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 61 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D +I+ E + + G S F L + P E+P Sbjct: 62 SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAI---VESGRSKFNLTTLPAEEYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 119 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +++ Q + S+I+PRK V E+ R+L S D ++ + + + +++ + + Sbjct: 177 RLAVCTIEL-DQDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + N L+QA R SI+S+ R+++V+L+LS ++L +T Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + +V RL ++SS I Sbjct: 296 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKC-----QQVRIRLTDASSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N++D +A YV+MPMR+ Sbjct: 351 -------ENSED--ASAEYVIMPMRL 367 >gi|197286951|ref|YP_002152823.1| DNA polymerase III subunit beta [Proteus mirabilis HI4320] gi|227354808|ref|ZP_03839225.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906] gi|118801|sp|P22838|DPO3B_PROMI RecName: Full=DNA polymerase III subunit beta gi|150879|gb|AAA83959.1| DNA polymerase III beta subunit [Proteus mirabilis] gi|194684438|emb|CAR46154.1| DNA polymerase III beta subunit [Proteus mirabilis HI4320] gi|227165126|gb|EEI49957.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906] Length = 367 Score = 203 bits (516), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 116/344 (33%), Positives = 199/344 (57%), Gaps = 10/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LL+ + L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 G+ TV A +DI R L +GA+IS EL G + + G S F L + P S+F Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+ +L VATDG Sbjct: 117 PNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237 HRLAV +DI Q S+IVPRK V E++R+L S +S +++ + + + ++ Sbjct: 175 HRLAVCAMDI-GQSLPGHSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +L+DG FP+Y+ V+P + K + C L+QA R +I+S+ + + V+++L++ +L + Sbjct: 234 TSKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 T +NP+ +A E ++V Y M+I FN YLL++++ + +EV Sbjct: 294 TANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEV 337 >gi|70733515|ref|YP_257154.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf-5] gi|68347814|gb|AAY95420.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Pf-5] Length = 367 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 123/389 (31%), Positives = 213/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + +L S L+ L+ERT FAMA +++RYYLNG+ ++ ++ AVAT Sbjct: 115 DFPTVEEGPGSLTCQLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIR--AVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + +IVPRK + E+ R+L+ D +V + L + I + Sbjct: 173 DGHRLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367 >gi|119773156|ref|YP_925896.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765656|gb|ABL98226.1| DNA polymerase III, beta subunit [Shewanella amazonensis SB2B] Length = 366 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 125/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEATVH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV G TV A L DIV+ L + +I ++ + + G S F L + P E+P Sbjct: 61 GDVQEGRTTVPAKKLLDIVKSLPEQTEIKVEQQE---NKWLLRCGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L LK+L++ T F+MA +++RYYLNG+ I E L AVATDGH Sbjct: 118 NVEAFRPDIEFTLKQGTLKSLIDSTQFSMANQDVRYYLNGLL--IETEGNVLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + + +IVPRK V E+ R+L ++D + +++ ES I + + Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVVELSRLLDAEDQDITLAIGESAIRATTATAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRILLEDGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL++++++ SDEV V +DS++S++ Sbjct: 295 NNPEQEEAEEIIDVDYNSTTLEIGFNVSYLLDVLNSLRSDEV----RVTLIDSNSSALIE 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++DS YV+MPMR+ Sbjct: 351 NHVEEDS----------MYVVMPMRL 366 >gi|157373148|ref|YP_001471748.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315522|gb|ABV34620.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 366 Score = 202 bits (515), Expect = 5e-50, Method: Compositional matrix adjust. Identities = 119/387 (30%), Positives = 214/387 (55%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G T+ A DIV+ L D ++ +EN L + G S F L + P E+ Sbjct: 61 GDVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + LK+L++ T F+MA +++RYYLNG+ E L A+ATDG Sbjct: 117 PNVEAFQADIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ +V + +IVPRK V E+ R+ +D + +++ ++ I S + Sbjct: 175 HRLALSH-RMVEESLPEKQVIVPRKGVVELQRLFEGEDLDITIAIGDNAIRATTGSAVFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLENNLIKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ N+ YV+MPMR+ Sbjct: 349 IENHIEE---------NSMYVVMPMRL 366 >gi|167621943|ref|YP_001672237.1| DNA polymerase III subunit beta [Shewanella halifaxensis HAW-EB4] gi|167351965|gb|ABZ74578.1| DNA polymerase III, beta subunit [Shewanella halifaxensis HAW-EB4] Length = 366 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 122/389 (31%), Positives = 214/389 (55%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEVQLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G TV A DIV+ L D ++ +EN L + G S F L + P E+ Sbjct: 61 GEVVEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E F L +K+L++ T F+MA +++RYYLNG+ E L A+ATDG Sbjct: 117 PNVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ I A + + +IVPRK V E++R + D V +++ ++ I + + Sbjct: 175 HRLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKIVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 I DN + ++ YV+MPMR+ Sbjct: 349 I-----------DNHIEQDSMYVVMPMRL 366 >gi|127510937|ref|YP_001092134.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4] gi|126636232|gb|ABO21875.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4] Length = 366 Score = 202 bits (514), Expect = 7e-50, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQ 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V G TV A DIV+ L D ++ +++ + + G S F L + P E+P Sbjct: 61 GEVQEGRTTVPAKKFLDIVKSLPDQVELKIEQQD---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L LK+L++ T F+MA +++RYYLNG+ E L A+ATDGH Sbjct: 118 NVDAFQADIEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ +V +IVPRK V E+ R+ +D V +S+ E+ I +S + Sbjct: 176 RLALSH-RMVQDSLPEKQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E +++ Y+ P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDIEYDNAPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHVEE---------DSMYVVMPMRL 366 >gi|78484348|ref|YP_390273.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2] gi|78362634|gb|ABB40599.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2] Length = 368 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI++ R ++L++L ++E++ T+P+ ++L Q N L + AS EIE + Sbjct: 1 MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D S+T+ A L IVR L DG I + +E+ +S G S F L + P +FP Sbjct: 61 SSDGDFSVTLPAVKLISIVRSLPDGLTI-LLEFDEM--RCQLSAGRSRFKLSTLPADDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + SF +A LK ++ T FAMA++++R+YLNG+ F I+ + L++ VATDGH Sbjct: 118 TIDLTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ + + I+PRK V E+ +++ DS + SL+++ + + E + Sbjct: 176 RLSTCSTLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTC 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP++ V+P ND+ ++ + LR + R +I+S+ + + ++L+LS + L + Sbjct: 236 KLVDGRFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D ++ E M + YN M+I FN YLL++++++ ++ V + +NSS + Sbjct: 296 QNSDQDESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMH-----EEAVTLYMKDANSSCMV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D++N + +V+MPMR+ Sbjct: 351 -----DTQN---ETCHCQHVIMPMRL 368 >gi|149191877|ref|ZP_01870111.1| DNA polymerase III subunit beta [Vibrio shilonii AK1] gi|148834269|gb|EDL51272.1| DNA polymerase III subunit beta [Vibrio shilonii AK1] Length = 320 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 106/322 (32%), Positives = 186/322 (57%), Gaps = 20/322 (6%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 GS+TV + DI R L D + I+ E G V + G S F L + P S+FP+ ++ Sbjct: 19 AGSVTVPSRKFLDICRGLPDDSTITIVLE---GDRVQVRSGRSRFSLSTLPASDFPNIED 75 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + + + + LK+L+E+T F+MA +++RYYLNG+ F +++ L+ +VATDGHR+AV Sbjct: 76 WQQEVAVTVTQAELKSLIEKTQFSMANQDVRYYLNGMLFELDQNTLR--SVATDGHRMAV 133 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 A V + IIVPRK V E+ ++L + + V + + S I + + + +L+D Sbjct: 134 ALVSLEGSFDN-KQIIVPRKGVQELSKLLDAPEQPVTLQIGSSNIRAEVNNFVFTSKLVD 192 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC LRQA R +I+S+ + + V+++L +++ +T +NP+ Sbjct: 193 GRFPDYRRVLPQNTDKTLEANCDELRQAFSRAAILSNEKFRGVRVNLDQNEMRITANNPE 252 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A E ++V + ++I FN Y+L++++ + D+V + ++N+S I + Sbjct: 253 QEEAEEMLDVEFQGDALEIGFNVSYVLDVLNTLRC-----DQVRISMSNANASALIENSE 307 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 308 DDS---------AMYVVMPIRL 320 >gi|238898808|ref|YP_002924490.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466568|gb|ACQ68342.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 368 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 126/388 (32%), Positives = 217/388 (55%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ N+ +L + A+ ++E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVISPLSARPTMPILGNLLLQVNENVLFLTATDLQMEMVVRVVLS 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS TV A +DI R L +G+ I+ + G + + G S F L + P S Sbjct: 61 HSDLHESGSTTVPARKFFDIWRGLLEGSTITVTLD---GDRLLVYSGRSRFSLSTLPSSG 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + + +F L LK L++ T F+MA +++RYYLNG+ F ++L+ VATD Sbjct: 118 FPGLDDWKTQVAFSLPQETLKKLIDATQFSMAHQDVRYYLNGMLFETENKELR--TVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + S+IVPRK V E+ R+L + VK+ + E I ++++L+ Sbjct: 176 GHRLAVCSMSTDETLPSY-SVIVPRKGVIELGRLLEASVHPVKLHIGEHNIRAHLDNLTF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LID FP+Y+ V+P + +K L C L+QA RV+I+S+ + + V+L LS +++ + Sbjct: 235 TCKLIDARFPDYRRVLPKNPNKILEAKCDLLKQAFSRVAILSNEKFRGVRLYLSHNQMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E +++ Y ++I N Y+L+I++ + D+V F L ++ SS+ Sbjct: 295 TANNPEQEEAEEILDIEYEGEELEIGLNVSYILDILNILKC-----DKVRFLLINAASSL 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D S+ Y+LMPMR+ Sbjct: 350 QI--EDHSSQ-------MVSYILMPMRL 368 >gi|304309654|ref|YP_003809252.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma proteobacterium HdN1] gi|301795387|emb|CBL43585.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma proteobacterium HdN1] Length = 367 Score = 202 bits (514), Expect = 8e-50, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 205/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R IL+ L ++ER+ T P+ ++LL + L + + E+E+ I Sbjct: 1 MKFKVIREGILKPLQQLAGLVERRQTKPILANILLVLDGNALTLTGTDTEVELRARIQLG 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A L DI + L +GA++ +++ + + G S F L + P +FP Sbjct: 61 EEYPFGRATLPAKKLLDICKSLPEGAELLIEADDQ---KALLRSGRSKFSLVALPPDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++ ++ F + L+ L+E+T FAMA +++R+YLNG+ ++E +L+ AVATDGH Sbjct: 118 DLEDGQFEVQFSIQQRYLRELIEKTGFAMAQQDVRFYLNGMLLEVSENNLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + DI+ Q A + +VPRK + EI ++ S D + +SLS + + L + Sbjct: 176 RLALGDRDILWQGAGIRQAVVPRKGILEIPKLFGSDDGELLISLSGNHLRAETADLRFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+D ++P Y V+P ++ + + LRQ + RV I+S+ + + V+L+ L Sbjct: 236 KLLDAKYPEYGRVLPKPGERYIVADRDALRQCLLRVGILSNEKFRGVRLTFQCGVLVARA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A ES+ V YN +I FN YLL+++ + S + V L +N++ I Sbjct: 296 SNPEQEEAEESVVVDYNGADTEIAFNIGYLLDVLGVVKS-----ESVSISLADANNTALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D+K YV+MPMRI Sbjct: 351 R-------ETVDDKT--LYVVMPMRI 367 >gi|58584686|ref|YP_198259.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419002|gb|AAW71017.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 393 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 125/384 (32%), Positives = 215/384 (55%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R+ +L L ++ER+N I + + ++A G +++ A+ +I I ++ A Sbjct: 29 MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 88 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VSAH L+DIV+KL ++F + N+ G ++ IS+G++NF L + ++ P Sbjct: 89 VLTEGEVKVSAHTLHDIVKKLPADLDVNF-EVNDQG-KLLISYGNANFSLPNVVLNKLPV 146 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E ++ Y F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 147 LEEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 204 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L++L D + + LS+ +I + + Sbjct: 205 LSCVKKPKPQNINSEFGVIIPRKTVIELLKVLDDCDE-INIKLSDRKIKFTCGKYIIISK 263 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP S DK++ V + L +DRVS++ S RI++++ SL L + + Sbjct: 264 LIDGAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSN 323 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A E + V YN P++I FN +YLL+ + I S + F L S+S+ I Sbjct: 324 SQECSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIKS------KCKFSLSDSSSATVI- 376 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +N N Y++MP+R Sbjct: 377 --------TDENDPNVLYIVMPVR 392 >gi|148980123|ref|ZP_01815903.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3] gi|145961424|gb|EDK26730.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3] Length = 356 Score = 201 bits (512), Expect = 1e-49, Method: Compositional matrix adjust. Identities = 110/363 (30%), Positives = 202/363 (55%), Gaps = 21/363 (5%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV-CGSITVSAHLLYDIVRKLQ 82 + T+P+ ++L++ D +L + A+ E+E+ + D GSITV + DI R L Sbjct: 14 RPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEAGSITVPSRKFLDICRGLP 73 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 D + I+ + G V + G S F L + P ++FP+ ++ + + L+ L+E Sbjct: 74 DSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIEDWSSEVEVSVTQAELRGLIE 130 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 +T F+MA +++RYYLNG+ F I E L +VATDGHR+AV++ + A A+ IIVPR Sbjct: 131 KTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGHRMAVSQAQLGADFAQ-KQIIVPR 187 Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262 K V E++++L + + V + + S + + + + +L+DG FP+Y+ V+P + K L Sbjct: 188 KGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPDYRRVMPQNTTKTLE 247 Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 C LR A R +I+S+ + + V+++L+ ++ +T +NP+ +A E ++V + ++I Sbjct: 248 AGCDELRSAFSRAAILSNEKFRGVRVNLADSEMRITANNPEQEEAEEMLDVTFEGDALEI 307 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 FN Y+L++++ + ++V + +N+S I DS A YV+MP Sbjct: 308 GFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENAQDDS---------AMYVVMP 353 Query: 383 MRI 385 +R+ Sbjct: 354 IRL 356 >gi|299768252|ref|YP_003730278.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1] gi|298698340|gb|ADI88905.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1] Length = 382 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 211/401 (52%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + ++ +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLLE++ + D Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNVPLEMSFNAQYLLEVLGVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVNMSMSEANQSVLVQDPAHTDQT---------YVVMPMRV 382 >gi|170719189|ref|YP_001746877.1| DNA polymerase III subunit beta [Pseudomonas putida W619] gi|169757192|gb|ACA70508.1| DNA polymerase III, beta subunit [Pseudomonas putida W619] Length = 367 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/389 (30%), Positives = 213/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDVLIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+T Sbjct: 115 DFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + + +IVPRK + E+ R+L+ + V + L + I N + Sbjct: 173 DGHRLALCSMSAAIEQDERHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRANTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V Y+ ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVDYDGASLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D ++ YV+MPMR+ Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367 >gi|241667602|ref|ZP_04755180.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876147|ref|ZP_05248857.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842168|gb|EET20582.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 367 Score = 201 bits (511), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 221/389 (56%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L N+ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L D + I F ++ +V I +S F L S +P Sbjct: 61 CNTNVKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ L+ ++ R SI+++ + + V+L++S ++ Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +NPD KA + + V YN+ M+ICFNYKYLL+II N+ S+E + LD+ N S Sbjct: 294 LSANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDII-NVLSEET----MTIYLDNPNMS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367 >gi|167627067|ref|YP_001677567.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597068|gb|ABZ87066.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 367 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 221/389 (56%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L N+ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L D + I F ++ +V I +S F L S +P Sbjct: 61 CNTNIKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ L+ ++ R SI+++ + + V+L++S ++ Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +NPD KA + + V YN+ M+ICFNYKYLL+II N+ S+E + LD+ N S Sbjct: 294 LSANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDII-NVLSEET----MTIYLDNPNMS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367 >gi|88607712|ref|YP_505645.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ] gi|88598775|gb|ABD44245.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ] Length = 375 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/389 (31%), Positives = 212/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ R D+L+ L + +IER+N+I V V ++A ++E ++ +I I + A+ Sbjct: 9 LDFSISREDLLQALNYVSSVIERRNSIAVLSCVRIEAKGSVIEFTSTDLDISIEACVQAN 68 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G SA LLYDIVRKL A + F K N+ ++ ++ G++ FYL +FP Sbjct: 69 VATGGVAVASAQLLYDIVRKLSGEADVRF-KLND--GKLLVACGNARFYLHVISPEKFPD 125 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F++ ++ L L+ +T F+M+ EE RY L G++FH+++E LC VATDGHR Sbjct: 126 IEGSSLDCGFDIPATSLAELLNKTKFSMSVEESRYNLRGVYFHVDDE--MLCCVATDGHR 183 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 L++A++ + ++I+PRK V E+L+I+ V V +S +I + Sbjct: 184 LSLAKISKPEGLHSGIAVIIPRKTVNEVLKIIGHGGGDAAQMVSVGISNRKICFRYKGYF 243 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M +++DG FP+Y +IP + ++ + L+ AVDRVS++ +++A+KLS + KL Sbjct: 244 MVSKVLDGTFPDYAAIIPTECGNSVSIDASVLQSAVDRVSVVVFDKVKAIKLSFTEGKLV 303 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + D G A E ++V Y + I N +YL+E++ +I E+VF S+ S Sbjct: 304 LSSASSDQGDASEELSVDYEGDEVVIGLNARYLMEVLGSIKG----VCEIVF----SDGS 355 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD + +++MPMRI Sbjct: 356 AAVLVKDGE---------YGMHIVMPMRI 375 >gi|332288918|ref|YP_004419770.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179] gi|330431814|gb|AEC16873.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179] Length = 366 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ V R ++L+ L C ++ + ++PV ++L+Q + L + S E+E++ + Sbjct: 1 MQFIVARENLLKPLQQVCGVLNNRPSLPVLNNILVQIDGDRLTLTGSDLEVELSTFVQLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S G+ T+ A DI R L + AQI+ EN+ V ++ S F L + P +P Sbjct: 61 SSSENGTFTIPARKFLDICRSLNEDAQITVNYEND---RVLVTAERSKFNLATLPAESYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + SVL+ ++E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTQLDVDVELNIEQSVLRRVMEATQFSMANQDARYFLNGMKFETENNVLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + + +IIVPRK V E++R+L S + + + +S I +++ ++ + Sbjct: 176 RLAVCGIQLQQNVPDY-AIIVPRKGVIELMRLLDSNSENAYIRMGQSNIQVHLNNVIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + D+ L V+ +L+QA R +I+S+ R + V+L + +++L + Sbjct: 235 KLIDGRFPDYRRVLPKNADRILEVDWNSLKQACIRAAILSNERFRGVRLIIEANQLKILA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NPD +A E ++V Y PM++ FN Y+L++++ + V RL + SS I Sbjct: 295 QNPDQEEAEEVIDVSYQGEPMEVGFNVSYILDVLNALKC-----QSVRMRLTDATSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ NA YV+MPMR+ Sbjct: 350 EDCEQS---------NAEYVIMPMRL 366 >gi|212632926|ref|YP_002309451.1| DNA polymerase III subunit beta [Shewanella piezotolerans WP3] gi|212554410|gb|ACJ26864.1| DNA polymerase III, beta subunit [Shewanella piezotolerans WP3] Length = 366 Score = 201 bits (510), Expect = 2e-49, Method: Compositional matrix adjust. Identities = 122/389 (31%), Positives = 214/389 (55%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSAHSLKLTGTDLEVELVGEVLLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G TV A DIV+ L D ++ +EN L + G S F L + P E+ Sbjct: 61 GEVFEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E F L +K+L++ T F+MA +++RYYLNG+ E L A+ATDG Sbjct: 117 PNVEAFEAELEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ I A + + +IVPRK V E++R + V +++ ++ I + + Sbjct: 175 HRLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEGDELDVTIAIGDNAIRATTATAVFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKIVIASRQQLKQALLRASILSNEKFRGVRVQLENNLIKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 I DN V ++ YV+MPMR+ Sbjct: 349 I-----------DNHVEQDSMYVVMPMRL 366 >gi|288939766|ref|YP_003442006.1| DNA polymerase III subunit beta [Allochromatium vinosum DSM 180] gi|288895138|gb|ADC60974.1| DNA polymerase III, beta subunit [Allochromatium vinosum DSM 180] Length = 366 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 206/387 (53%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ R +L L ++ER+ T+P+ ++L+ A G + + + E+E+ + A Sbjct: 1 MEFVANREIVLPALNKVIGVVERRQTLPILGNLLVVARAGRVTLTGTDLEVEVKTSFEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G T+ A L DI R L +GA+I ++E ++ G F L P ++FP+ Sbjct: 61 IQQEGETTIPARKLVDICRNLSEGAEIRLRVKDE---RCVVTSGRGRFTLGLLPAADFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 EE + F++ S LK L+++T FAMA +++RYYLNG+ ++ L AVATDGHR Sbjct: 118 MDLEEGGFDFQIQESQLKRLLDKTAFAMAQQDVRYYLNGLLLELHAT--VLIAVATDGHR 175 Query: 181 LA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA V +D+ + +IVP K V E+ R L S D + + LSE + + + +++M+ Sbjct: 176 LAKFVTPLDLTLDTER--QVIVPNKTVMELKRQLGSSDDPISIRLSERSLRVVVGAMTMT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG +P Y+ VIP + + V L++A+ R SI+S+ + + V+LS L + Sbjct: 234 SKLVDGRYPEYERVIPGHSGRTATVEKDALKRALSRTSILSNEKYRGVRLSFDPGTLKLL 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ +A E + + Y+ P+ I FN YL++++ I DE V+ +N S Sbjct: 294 AHNPEQEEAEEEIELEYDGEPISIGFNVAYLMDVLGVI--DETA---VIIHFQDANGSSI 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 RG +S+ +V+MPMR+ Sbjct: 349 WRGVGGESET---------FVVMPMRL 366 >gi|33151999|ref|NP_873352.1| DNA polymerase III subunit beta [Haemophilus ducreyi 35000HP] gi|33148221|gb|AAP95741.1| DNA polymerase III beta chain [Haemophilus ducreyi 35000HP] Length = 367 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 124/387 (32%), Positives = 212/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M++T+ R +L+ L C ++ + T+PV ++LL N L + + E+E+T + Sbjct: 1 MQLTITREQLLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLEVELTTQAELE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + I S F L + P S++ Sbjct: 61 QAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQDRAL---IRADRSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSMEQSTLSRLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ RILS V++ + + + +++ + + Sbjct: 176 HRLAVCTMALSQELTTH-SVIVPRKAVLELSRILSMTADPVRLEIGTNNLRISMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQNTAMEIGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D +N+ A YV+MPMR+ Sbjct: 350 I----EDCENS-----TAEYVIMPMRL 367 >gi|169794208|ref|YP_001712001.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE] gi|184156324|ref|YP_001844663.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii ACICU] gi|213155389|ref|YP_002317434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057] gi|215481763|ref|YP_002323945.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB307-0294] gi|239503908|ref|ZP_04663218.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB900] gi|260558094|ref|ZP_05830305.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC 19606] gi|301345944|ref|ZP_07226685.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB056] gi|301512868|ref|ZP_07238105.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB058] gi|301594681|ref|ZP_07239689.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB059] gi|332854714|ref|ZP_08435501.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150] gi|332865594|ref|ZP_08436434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113] gi|332873308|ref|ZP_08441263.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059] gi|169147135|emb|CAM84994.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE] gi|183207918|gb|ACC55316.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii ACICU] gi|193075922|gb|ABO10499.2| DNA polymerase III [Acinetobacter baumannii ATCC 17978] gi|213054549|gb|ACJ39451.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057] gi|213987621|gb|ACJ57920.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB307-0294] gi|260408448|gb|EEX01755.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC 19606] gi|322506193|gb|ADX01647.1| DNA polymerase III, beta chain [Acinetobacter baumannii 1656-2] gi|332727871|gb|EGJ59273.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150] gi|332735246|gb|EGJ66323.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113] gi|332738514|gb|EGJ69386.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059] Length = 382 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 210/401 (52%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|325275333|ref|ZP_08141284.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51] gi|324099524|gb|EGB97419.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51] Length = 367 Score = 200 bits (509), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 121/389 (31%), Positives = 212/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLLKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+T Sbjct: 115 DFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + +IVPRK + E+ R+L+ + V + L + I + Sbjct: 173 DGHRLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R SI+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKVVVGDRQALREAFSRTSILSNEKYRGIRLQLAAGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V Y+ ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVDYDGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D ++ YV+MPMR+ Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367 >gi|328675184|gb|AEB27859.1| DNA polymerase III beta subunit [Francisella cf. novicida 3523] Length = 367 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 222/389 (57%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L + + I F + NE +V I +S F L S +P Sbjct: 61 CNTSIKLALNADKIYNIVRSLNENSMIDF-RVNE--NKVTIVSNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +NPD KA + + V YN+ M+ICFNYKYLL+II N+ S+E + LD+ N S Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQAMEICFNYKYLLDII-NVLSEET----MTIYLDNPNMS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367 >gi|169632031|ref|YP_001705767.1| DNA polymerase III, beta chain [Acinetobacter baumannii SDF] gi|169150823|emb|CAO99423.1| DNA polymerase III, beta chain [Acinetobacter baumannii] gi|323516069|gb|ADX90450.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii TCDC-AB0715] Length = 382 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 210/401 (52%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNAPLEMSFNAQYLLDVLGVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|260553771|ref|ZP_05826041.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624] gi|260405075|gb|EEW98575.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624] Length = 382 Score = 200 bits (508), Expect = 3e-49, Method: Compositional matrix adjust. Identities = 120/401 (29%), Positives = 209/401 (52%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNGQALTITGSDLEVELVASTALS 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L DI + L A I E++ + G+S F L + P Sbjct: 61 EGACLEAGETTVPARKLMDICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLNTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEILASSSSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNTPLEMSFNAQYLLDVLGVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|268628305|gb|ACZ13551.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 200 bits (508), Expect = 4e-49, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L DS +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFVFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSQNQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628303|gb|ACZ13550.1| DNA polymerase III beta chain [Xenorhabdus bovienii] gi|268628307|gb|ACZ13552.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 199 bits (507), Expect = 5e-49, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L DS +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFVFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628309|gb|ACZ13553.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L DS +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|303251823|ref|ZP_07337994.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249124|ref|ZP_07531131.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649253|gb|EFL79438.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854412|gb|EFM86608.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 367 Score = 199 bits (506), Expect = 6e-49, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 214/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI R L + + IS F+E+ + S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA +++RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDVRYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + A YV+MPMR+ Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367 >gi|26986756|ref|NP_742181.1| DNA polymerase III subunit beta [Pseudomonas putida KT2440] gi|148545261|ref|YP_001265363.1| DNA polymerase III subunit beta [Pseudomonas putida F1] gi|60392201|sp|P0A120|DPO3B_PSEPK RecName: Full=DNA polymerase III subunit beta gi|60392202|sp|P0A121|DPO3B_PSEPU RecName: Full=DNA polymerase III subunit beta gi|24981347|gb|AAN65645.1|AE016191_2 DNA polymerase III, beta subunit [Pseudomonas putida KT2440] gi|45691|emb|CAA32894.1| unnamed protein product [Pseudomonas putida] gi|148509319|gb|ABQ76179.1| DNA polymerase III, beta subunit [Pseudomonas putida F1] gi|313496419|gb|ADR57785.1| DnaN [Pseudomonas putida BIRD-1] Length = 367 Score = 199 bits (506), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 120/389 (30%), Positives = 211/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+T Sbjct: 115 DFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + +IVPRK + E+ R+L+ + V + L + I + Sbjct: 173 DGHRLALCSMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V Y ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D ++ YV+MPMR+ Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367 >gi|303250481|ref|ZP_07336678.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251523|ref|ZP_07533430.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256023|ref|ZP_07537811.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302650469|gb|EFL80628.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860987|gb|EFM92993.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865445|gb|EFM97340.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 367 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 121/388 (31%), Positives = 214/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + A+ E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTATDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI R L + + IS F+E+ + S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + A YV+MPMR+ Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367 >gi|293611383|ref|ZP_06693679.1| DNA polymerase III [Acinetobacter sp. SH024] gi|292826255|gb|EFF84624.1| DNA polymerase III [Acinetobacter sp. SH024] Length = 382 Score = 199 bits (505), Expect = 7e-49, Method: Compositional matrix adjust. Identities = 119/401 (29%), Positives = 211/401 (52%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I+E L+ AV Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + ++ +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLDVLGVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|167031025|ref|YP_001666256.1| DNA polymerase III subunit beta [Pseudomonas putida GB-1] gi|166857513|gb|ABY95920.1| DNA polymerase III, beta subunit [Pseudomonas putida GB-1] Length = 367 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 120/389 (30%), Positives = 211/389 (54%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I + + ++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+T Sbjct: 115 DFPTAEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + +IVPRK + E+ R+L+ + V + L + I + Sbjct: 173 DGHRLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V Y ++I FN YLL+++ +++ ++V L SNSS Sbjct: 293 IQANNPEQEEAEEEISVDYKGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D ++ YV+MPMR+ Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367 >gi|113460283|ref|YP_718342.1| DNA polymerase III subunit beta [Haemophilus somnus 129PT] gi|170718298|ref|YP_001783357.1| DNA polymerase III subunit beta [Haemophilus somnus 2336] gi|112822326|gb|ABI24415.1| DNA polymerase III, beta subunit [Haemophilus somnus 129PT] gi|168826427|gb|ACA31798.1| DNA polymerase III, beta subunit [Haemophilus somnus 2336] Length = 366 Score = 199 bits (505), Expect = 8e-49, Method: Compositional matrix adjust. Identities = 123/388 (31%), Positives = 210/388 (54%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---I 57 M+ V R +L+ L C ++ + P+ +VLLQ +L I + E+E++ I Sbjct: 1 MQFIVSREHLLKPLQQVCGVLSSRPNFPILNNVLLQIEGNVLRITGTDLEVELSTQAQLI 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 AS D GS T+ A DI R D A+I+ E E + G S F L + P E Sbjct: 61 QASQD--GSYTIPAKKFLDICRSFPDEAEITVIFEEERAL---VRSGRSKFNLTALPADE 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 116 YPNLADWQSEVDFYLPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + Q ++I+PRK + E++R+L + + + V + + + +++ S+ Sbjct: 174 GHRLAVCTIPL-EQDLHTHAVILPRKGILELMRLLENSEHAAHVQIGTNNLRIDLGSIIF 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + + N L+QA R++I+SS +++ V+L L+S++L + Sbjct: 233 TSKLIDGRFPDYRRVLPRNATHIMEGNWELLKQAFARMAILSSDKVKTVRLQLTSNQLKI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T NP+ A E ++V YN M++ FN Y+L++++ + +V + F ++SS Sbjct: 293 TATNPEQEVAEEILDVIYNGADMEVGFNVSYILDVLNALKCQQV---RLCF--TDASSSC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D +S A YV+MPMR+ Sbjct: 348 LLEDADDES---------AEYVVMPMRL 366 >gi|50083299|ref|YP_044809.1| DNA polymerase III beta [Acinetobacter sp. ADP1] gi|49529275|emb|CAG66987.1| DNA polymerase III, beta chain [Acinetobacter sp. ADP1] Length = 382 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 119/401 (29%), Positives = 210/401 (52%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +QAN L I S E+E+ + + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L DI + L A I E++ + G+S F L + P Sbjct: 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I++ L+ AV Sbjct: 118 DYPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-- 233 TDGHRLA+ EV + + IVPRKAVGE+ R+LS +D + + + +++ I Sbjct: 176 TDGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIA 235 Query: 234 ---------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 ++ + +LIDG+FP+Y+ VIP DK +++ +Q++ RV+I+S+ +++ Sbjct: 236 NRDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ + D L + +NP+ +AIE + + Y + +++ FN +YLL+++ + D Sbjct: 296 GVFLNFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVSMSMTEANQSVLVQDAAHPDQT---------YVVMPMRV 382 >gi|268628293|gb|ACZ13545.1| DNA polymerase III beta chain [Xenorhabdus beddingii] Length = 276 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|260912770|ref|ZP_05919256.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis ATCC 43325] gi|260633148|gb|EEX51313.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis ATCC 43325] Length = 366 Score = 198 bits (504), Expect = 9e-49, Method: Compositional matrix adjust. Identities = 125/386 (32%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59 M+ V R ++L+ L C ++ + IPV +VLLQ N L I + E+E+ T + Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQINGDCLVITGTDLEVELSTQSALL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S DV G+ T+ A DI R L + A+IS E + + G S F L + P E+P Sbjct: 61 STDVKGNFTIPAKKFLDICRSLPENAEISVSFEEDRAI---VKSGRSKFNLSTLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTIEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E++R+L + D ++ + + + + + ++ + Sbjct: 176 RLAVCTIAL-EQDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIELGNIIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + L + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEADWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYIGEEMEVGFNVSYILDVLNALKC-----QRVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S A YV+MPMR+ Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366 >gi|257464819|ref|ZP_05629190.1| DNA polymerase III subunit beta [Actinobacillus minor 202] gi|257450479|gb|EEV24522.1| DNA polymerase III subunit beta [Actinobacillus minor 202] Length = 367 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 211/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M T+ R +L L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MLFTITREQLLRPLQQVCGVLASRPTLPVIGNLLLEVEGERLSMTGTDLEVELTTQAQLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V+ T+ A DI + L D + IS E + I G S F L + P S++ Sbjct: 61 QAVNFSEKFTIPAKKFLDIAKSLPDDSVISIAFEADKAV---IKAGRSKFSLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++A S+IVPRKAV E+ R++S+ V++ + S I +++ + + Sbjct: 176 HRLAVCTMALTQELASH-SVIVPRKAVLELSRLVSTSHDIVRLEIGSSNIRISMNGIVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L + L++A+ R +I+S+ + + V+LSLS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLSDNILKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN Y+L++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D NN A YV+MPMR+ Sbjct: 350 I----EDCDNN-----TAEYVIMPMRL 367 >gi|268628311|gb|ACZ13554.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 198 bits (504), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L DS +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|108761971|ref|YP_628517.1| DNA polymerase III subunit beta [Myxococcus xanthus DK 1622] gi|108465851|gb|ABF91036.1| DNA polymerase III, beta subunit [Myxococcus xanthus DK 1622] Length = 368 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 209/386 (54%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + ++ + L A I+ERK T+P+ +VL+ AN G + + A +I + PA Sbjct: 1 MEFRIAADELKKALYRAQGIVERKTTMPILANVLVTANKGGITVTAFDLDIGVVSEHPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T+SA ++DIV+ L D AQ++ K V+IS G ++F + E+P Sbjct: 61 VIKTGAVTLSAKYVFDIVQNLPD-AQVTLKKLAN--NYVDISSGSAHFKIVGMAAEEYPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +EE ++ + L ++++T FA++++E RY LNG+FF K+ VATDGHR Sbjct: 118 LPKEENAPLVQVGGNTLLEMIKKTQFAISSDETRYILNGVFFEPQSTG-KVRMVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E ++ +I+PRK + E+ R+L + D+ + +E+ L+M + Sbjct: 177 LALVERELPGDFKLKSGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG+FP YQ VIP +K + V L +++ R++++S+ + AV++ L ++L +T Sbjct: 237 RLIDGQFPEYQRVIPKEGEKIVLVPKVRLLESLKRIALLSADKSNAVRIGLEENQLIITA 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NPD+G+A + + + Y + I FN +YL++++ + DEV F L +S + Sbjct: 297 SNPDLGEAKDVLELAYRGNGITIGFNARYLMDVLAVTET-----DEVSFELGDEHSPGVL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A V+MPMR+ Sbjct: 352 HAPG-------DRSFTA--VVMPMRV 368 >gi|170724372|ref|YP_001758398.1| DNA polymerase III subunit beta [Shewanella woodyi ATCC 51908] gi|169809719|gb|ACA84303.1| DNA polymerase III, beta subunit [Shewanella woodyi ATCC 51908] Length = 366 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 116/387 (29%), Positives = 213/387 (55%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G T+ A DIV+ L D ++ +EN L + G S F L + P E+ Sbjct: 61 GEVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + LK+L++ T F+MA +++RYYLNG+ E L A+ATDG Sbjct: 117 PNVEAFQAEIEFTINQGTLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA++ I + + +IVPRK V E+ R+ ++ + +++ ++ I S + Sbjct: 175 HRLALSHRQIQDTLPE-KQVIVPRKGVVELQRLFEGEELDITIAIGDNAIRATTASAVFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + + +T Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKVVIASRNHLKQALLRASILSNEKFRGVRVQLEENLIKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ ++ YV+MPMR+ Sbjct: 349 IENHIEE---------DSMYVVMPMRL 366 >gi|71279230|ref|YP_266784.1| DNA polymerase III subunit beta [Colwellia psychrerythraea 34H] gi|71144970|gb|AAZ25443.1| DNA polymerase III, beta subunit [Colwellia psychrerythraea 34H] Length = 367 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 130/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 MK ++ R +L+ L +ERK+T+P+ ++L + + L + A+ E+E+ A Sbjct: 1 MKFSLNRELLLKPLLLVSGAVERKSTLPILSNILFEVSGQSLTLTATDLELEMVAYAEIQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G IT+ A L DI + L + + ISF +E + +S G S + L + P +FP Sbjct: 61 NQGDDGKITIPARKLLDICKSLPESSLISFEVIDE---TIKLSSGRSKYSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + F+L S L+E THF+MA +++RYYLNG+ I E ++ +VATDGH Sbjct: 118 NIEEWKGDVEFQLLKSEFLRLIESTHFSMANQDVRYYLNGM--SIESEGNEIRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ +IVPRK + EI+R+L+ D +V+V L + I + S + Sbjct: 176 RLAICKISNETLALPARQVIVPRKGILEIIRLLAPVDEAVQVFLGSNHIRIIDSEFSFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK N LRQ + R SI+S+ + + V+L+ S L +T Sbjct: 236 KLVDGRFPDYRRVLPRNGDKVFETNKDALRQVLSRASILSNEKFKGVRLNFSDTNLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + + + ++I FN Y+L+++ I D+ V F L +NSSV I Sbjct: 296 NNPEQEQAEEEIEINFPYGELEIGFNVSYVLDVLSAIK-----DENVKFTLADANSSVVI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G S N + A YV+MPMR+ Sbjct: 351 EG----SSNGE-----ALYVVMPMRL 367 >gi|90019651|ref|YP_525478.1| DNA polymerase III subunit beta [Saccharophagus degradans 2-40] gi|89949251|gb|ABD79266.1| DNA polymerase III, beta subunit [Saccharophagus degradans 2-40] Length = 367 Score = 198 bits (503), Expect = 1e-48, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 208/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R IL+ L ++ER+ T+PV +VL+ L + + E+EI G + Sbjct: 1 MKFIVSRETILKPLQLVAGVVERRQTLPVLANVLIVLEGEQLSLTGTDLEVEIVGRVTVD 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A DI R L DG+ I F +++ +V + G S F L S +EFP Sbjct: 61 QAISEGEITVPAKKFLDICRALPDGSVIEFTLDDQ---KVTVKSGRSRFTLSSLSANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ +F +K L++RT FAMA +++RYYLNG+ + + L++ V+TDGH Sbjct: 118 AVEQGSNDINFSCEQKEVKRLIDRTAFAMAQQDVRYYLNGMLWEVRAGALRV--VSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ I +A+ I+PRK V E+ R+L+ + +V++++ + I + + Sbjct: 176 RLAMCTRPINIDVAEPVQAILPRKGVIELSRLLNDSEENVELTMGPNHIRATTTEYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + L+QA R +I+S+ + + V+L L + +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKIVLGERAVLKQAFARTAILSNEKYRGVRLLLETGQLTIIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A + + V Y +++ FN YL ++ + + + D++ L SNSS + Sbjct: 296 NNPEQEEAEDQVAVEYEGDSIEVGFNVSYLQDVTNVLDT-----DKIKMTLSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N D + YV+MPMR+ Sbjct: 351 -----EEPENAD----SVYVVMPMRL 367 >gi|53729133|ref|ZP_00134099.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207490|ref|YP_001052715.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae L20] gi|165975459|ref|YP_001651052.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149271|ref|YP_001967796.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307244803|ref|ZP_07526902.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249201|ref|ZP_07531198.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307262582|ref|ZP_07544213.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096282|gb|ABN73110.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875560|gb|ABY68608.1| DNA polymerase III beta chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914402|gb|ACE60654.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854248|gb|EFM86454.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858725|gb|EFM90784.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306872080|gb|EFN03793.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 367 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 213/388 (54%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI R L + + IS F+E+ + S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + A YV+MPMR+ Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367 >gi|256821230|ref|YP_003145193.1| DNA polymerase III subunit beta [Kangiella koreensis DSM 16069] gi|256794769|gb|ACV25425.1| DNA polymerase III, beta subunit [Kangiella koreensis DSM 16069] Length = 367 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 124/390 (31%), Positives = 210/390 (53%), Gaps = 28/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R +L L +E++ T+PV +VL+ +D L + A+ E+E+ A Sbjct: 1 MRFTISRDQLLAPLQLVSGAVEKRQTLPVLSNVLMVVDDSKLSLTATDLEVELK----AQ 56 Query: 61 VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 VD+ G ITV A L DIVR L DG + K + T + + S F L + Sbjct: 57 VDLEGEFEPGEITVPARKLLDIVRSLGDGENV---KIEQSETRLKVITPSSRFSLSTMSA 113 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +EFP+ E + S EL VLK+L+E+T FAMA +++RYYLNG+ F + + KL VA Sbjct: 114 NEFPNLDETVSLASLELTQDVLKSLIEKTQFAMAQQDVRYYLNGMLFEFDND--KLTTVA 171 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA++ S I+PRK V E+ R+L D ++ ++L + I + Sbjct: 172 TDGHRLALSRAKASIDADDKISAIIPRKGVTELARLLEHSDDNITLNLGSNHIKVIGPDY 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 S + +L+DG FP Y+ V+P + DK + + ++++ R SI+ + + + V+ L+++++ Sbjct: 232 SFTSKLVDGRFPEYEKVLPRNGDKIVIADRELFKESLSRASILCNEKFRGVRFMLTNEQV 291 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +NP+ +A V Y ++I FN Y++++++ I + +V ++ F +D +NS Sbjct: 292 RLHANNPEQEEAEVEFGVDYQGSDLEIGFNVSYMIDVMNTIKTPQV---KLTF-ID-ANS 346 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I D + YV+MPMR+ Sbjct: 347 STLIEEVDGGE---------SVYVVMPMRL 367 >gi|88798538|ref|ZP_01114122.1| DNA polymerase III subunit beta [Reinekea sp. MED297] gi|88778638|gb|EAR09829.1| DNA polymerase III subunit beta [Reinekea sp. MED297] Length = 369 Score = 197 bits (502), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 120/390 (30%), Positives = 218/390 (55%), Gaps = 27/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 ++ ++ R +L+ L ++E++ T+PV +VLL+ L + + E+E+ G + Sbjct: 2 IQFSLAREQLLKPLQLVSGVVEKRQTLPVLSNVLLEVEGNQLALTGTDLEVELIGRVELS 61 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PAS G+ITV A DIVR L + A IS + + V ++ G S F L S P + Sbjct: 62 EPAS---DGAITVPAKKFLDIVRSLPEDAIISLQQTED---RVQVASGRSKFTLSSLPAT 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP+ +++E + L ++L L++ T FAMA +++RYYLNG+ +N+ ++ V+T Sbjct: 116 EFPNIEQDENAQEYRLPQNLLSQLIDATAFAMAQQDVRYYLNGMSVELNQSLVR--TVST 173 Query: 177 DGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 DGHRLA++ + + + +IVPRK + E+ R+LS D V++ + + + + Sbjct: 174 DGHRLAMSSRHVDGLNVPERKQVIVPRKGILELNRLLSDDDQPVQLYIGSTHLRTTTDEF 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + + +L+DG+FP+Y+ VIP DKE+ + ++ R +I+++ + + V++SLS L Sbjct: 234 TFTTKLVDGKFPDYERVIPRGGDKEVVGDRQVMKAIFSRAAILANEKYRGVRMSLSEGSL 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +NP+ +A ++ V Y+ +++ FN YLL++++ I ++V F L +NS Sbjct: 294 VVKANNPEQEEAEVAVEVDYSGPELEVGFNVSYLLDVMNVIRG-----EQVRFVLADANS 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + D DS + YV+MPMR+ Sbjct: 349 SALLTDFDDDS---------SMYVVMPMRL 369 >gi|15603025|ref|NP_246097.1| DNA polymerase III subunit beta [Pasteurella multocida subsp. multocida str. Pm70] gi|12721508|gb|AAK03244.1| DnaN [Pasteurella multocida subsp. multocida str. Pm70] Length = 366 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59 M+ V R ++L+ L C ++ + IPV +VLLQ L I + E+E+ T Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQIRGERLVITGTDLEVELSTETALL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV GS T+ A DI R L + A+IS E + + G S F L + P E+P Sbjct: 61 RTDVQGSFTIPAKKFLDICRSLPEEAEISVSFEEDRAI---VKSGRSKFNLSTLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E++R+L + D ++ + + + +++ ++ + Sbjct: 176 RLAVCTIAL-EQDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIDLGNIIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + L L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEAEWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYVGEEMEVGFNVSYILDVLNALKC-----QRVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D S A YV+MPMR+ Sbjct: 350 EDCDDAS---------AEYVIMPMRL 366 >gi|268628295|gb|ACZ13546.1| DNA polymerase III beta chain [Xenorhabdus hominickii] gi|268628297|gb|ACZ13547.1| DNA polymerase III beta chain [Xenorhabdus hominickii] gi|268628299|gb|ACZ13548.1| DNA polymerase III beta chain [Xenorhabdus hominickii] Length = 276 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|58697440|ref|ZP_00372737.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58536133|gb|EAL59745.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 353 Score = 197 bits (501), Expect = 2e-48, Method: Compositional matrix adjust. Identities = 125/371 (33%), Positives = 210/371 (56%), Gaps = 20/371 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 L ++ER+N+I V + ++A G +++ A+ +I + ++ A+V G + +SAH Sbjct: 2 LSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAATVLTEGEVKISAHT 61 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ +E+ Y + F L Sbjct: 62 LHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPALEEDNYKHDFILL 119 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHRL+ + I Sbjct: 120 NTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHRLSCIKRPKPGNIN 177 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 +I+PRK V E+L+IL + +KV LS+ +I L + +LIDG FPNY+ VI Sbjct: 178 GEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISKLIDGTFPNYKAVI 236 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313 P S DK + + L +DRVS++ S +++++K SL L + ++ + A ES+ V Sbjct: 237 PASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSNSQECSDATESIEV 296 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 YNE P++I FN +YLL+++ + ++ F L NS+ I +D S Sbjct: 297 DYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIITDEDDSS------- 343 Query: 374 VNAFYVLMPMR 384 YV+MPMR Sbjct: 344 --VLYVVMPMR 352 >gi|71905644|ref|YP_283231.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB] gi|71845265|gb|AAZ44761.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB] Length = 368 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 217/387 (56%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASV 61 I +R +L L I+ER++T+P+ +VLL+ L + A+ EI+IT + A Sbjct: 4 IKTQRDTLLAPLQSVSGIVERRHTLPILSNVLLEKKGDRLTLLATDIEIQITTSTECAGG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS- 120 + G++TV A + +I+R L D +++S E++ + + G S F LQ+ P +FP Sbjct: 64 EGDGAVTVGARKMQEILRSLPDTSEVSLVLEDK---RLQVRAGKSRFSLQTLPADDFPRM 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T E F ++ + L+ +T ++MA +++RYYLNG+ + ++L+ AVATDGHR Sbjct: 121 TMSEGETKQFSISQKAFRQLISKTQYSMAAQDVRYYLNGLLLLVEGKELR--AVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A V+I + + +I+PRK V E+ R+L D + ++L+ +++ + S+ + + Sbjct: 179 LAYASVEIDTDLPRQ-EMILPRKTVLELNRLLVDTDDLLNITLTPNQVRFSFGSVVLVSK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ V+P + ++V L QA+ R +I+++ + + V++ L + L + Sbjct: 238 LIDGKFPDYERVVPATLKNHMKVGRQTLMQAMQRAAILTNEKFRGVRVVLGDNSLKLIAA 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A+E + V Y +D+ FN YLL++++NI + DE+ + + +NSS I Sbjct: 298 NAEQEEAVEEIEVDYTGDVIDVGFNVGYLLDVLNNIHA-----DEIQWSFNDANSSALIT 352 Query: 361 --GKDKDSKNNKDNKVNAFYVLMPMRI 385 G D+ YV+MPMRI Sbjct: 353 LPGNDRFK-----------YVVMPMRI 368 >gi|307253757|ref|ZP_07535611.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258214|ref|ZP_07539957.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863241|gb|EFM95181.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867674|gb|EFM99519.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 212/388 (54%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI R L + + IS F+E+ + S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + ++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRASMNGVVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + A YV+MPMR+ Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367 >gi|322513484|ref|ZP_08066594.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae ATCC 25976] gi|322120703|gb|EFX92587.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae ATCC 25976] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 212/388 (54%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI R L + + IS F+E + S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEE----YRALVRAARSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSLEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + A YV+MPMR+ Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367 >gi|307260452|ref|ZP_07542147.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869855|gb|EFN01637.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 367 Score = 197 bits (500), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 213/388 (54%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAILE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +VD G T+ A DI R L + + IS F+E+ + S F L + P S+ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + A YV+MPMR+ Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367 >gi|268628287|gb|ACZ13542.1| DNA polymerase III beta chain [Xenorhabdus koppenhoeferi] Length = 276 Score = 196 bits (499), Expect = 3e-48, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDH 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628317|gb|ACZ13557.1| DNA polymerase III beta chain [Xenorhabdus cabanillasii] Length = 276 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLXIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y+ M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276 >gi|268628367|gb|ACZ13582.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. laumondii] Length = 276 Score = 196 bits (499), Expect = 4e-48, Method: Compositional matrix adjust. Identities = 102/270 (37%), Positives = 162/270 (60%), Gaps = 8/270 (2%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ Sbjct: 14 AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLD 69 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLA Sbjct: 70 DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 V + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + +L+ Sbjct: 128 VCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T +NP Sbjct: 187 DGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNP 246 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + +A E ++V Y M+I FN Y+L++ Sbjct: 247 EQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|268628377|gb|ACZ13587.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. hainanensis] Length = 276 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|268628291|gb|ACZ13544.1| DNA polymerase III beta chain [Xenorhabdus miraniensis] Length = 276 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYRGTEMEIGFNVSYVLDV 276 >gi|268628313|gb|ACZ13555.1| DNA polymerase III beta chain [Xenorhabdus indica] gi|268628315|gb|ACZ13556.1| DNA polymerase III beta chain [Xenorhabdus indica] Length = 276 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y+ M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276 >gi|240950076|ref|ZP_04754378.1| DNA polymerase III subunit beta [Actinobacillus minor NM305] gi|240295451|gb|EER46206.1| DNA polymerase III subunit beta [Actinobacillus minor NM305] Length = 367 Score = 196 bits (498), Expect = 5e-48, Method: Compositional matrix adjust. Identities = 122/388 (31%), Positives = 214/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M T+ R +++ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MLFTITREQLIKPLQQVCGVLSSRPTLPVIANLLLEVEGDRLLMTGTDLEVELTTEARLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 VD T+ A DI R L + + IS F+E++ + G S F L + P S+ Sbjct: 61 QEVDFSEKFTIPAKKFLDISRSLPEDSLISMSFEEDK----AILKAGRSKFSLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATD Sbjct: 117 YPNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++A S+IVPRKAV E+ R++S+ V++ + S I +++ + Sbjct: 175 GHRLAVCTMALTQELASH-SVIVPRKAVLELSRLVSANHDIVRLEIGSSNIRISMNGIVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L + L++A+ R +I+S+ + + V+LSL+ + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLNDNVLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN Y+L++++ + + V F L ++SS Sbjct: 294 TANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D NN A YV+MPMR+ Sbjct: 349 LI----EDCDNN-----TAEYVIMPMRL 367 >gi|268628357|gb|ACZ13577.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628359|gb|ACZ13578.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628361|gb|ACZ13579.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628363|gb|ACZ13580.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628365|gb|ACZ13581.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] Length = 276 Score = 196 bits (498), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|268628327|gb|ACZ13562.1| DNA polymerase III beta chain [Xenorhabdus stockiae] Length = 276 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLIANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628379|gb|ACZ13588.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. akhurstii] Length = 276 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628279|gb|ACZ13538.1| DNA polymerase III beta chain [Xenorhabdus japonica] Length = 276 Score = 196 bits (497), Expect = 6e-48, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAKISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMSI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y++V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRHVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628263|gb|ACZ13530.1| DNA polymerase III beta chain [Xenorhabdus kozodoii] gi|268628265|gb|ACZ13531.1| DNA polymerase III beta chain [Xenorhabdus kozodoii] Length = 276 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 164/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ +ATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFTFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYPGTEMEIGFNVSYILDV 276 >gi|268628319|gb|ACZ13558.1| DNA polymerase III beta chain [Xenorhabdus budapestensis] gi|268628321|gb|ACZ13559.1| DNA polymerase III beta chain [Xenorhabdus budapestensis] Length = 276 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFPLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMHI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y+ M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVKYHGTEMEIGFNVSYVLDV 276 >gi|319639359|ref|ZP_07994110.1| DNA polymerase III [Neisseria mucosa C102] gi|317399543|gb|EFV80213.1| DNA polymerase III [Neisseria mucosa C102] Length = 367 Score = 196 bits (497), Expect = 7e-48, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A DI+R L D A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 SVGNDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ + Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLF-- 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 351 --------TMPNNPNFKYIVMPMRI 367 >gi|268628273|gb|ACZ13535.1| DNA polymerase III beta chain [Xenorhabdus doucetiae] Length = 276 Score = 196 bits (497), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 100/268 (37%), Positives = 163/268 (60%), Gaps = 6/268 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+ TV A +DI R L DGA+IS ++ G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSLSTLPASDFPNLDDW 71 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 72 QSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVC 129 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+DG Sbjct: 130 SMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDG 188 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 FP+Y+ V+P + +K L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 189 RFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQ 248 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 249 EEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|225077252|ref|ZP_03720451.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens NRL30031/H210] gi|224951396|gb|EEG32605.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens NRL30031/H210] Length = 367 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 209/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 IT +A DI+R L D A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 NVGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ + Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLF-- 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 351 --------TMPNNPNFKYIVMPMRI 367 >gi|268628373|gb|ACZ13585.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. luminescens] gi|268628375|gb|ACZ13586.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. luminescens] Length = 276 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 162/270 (60%), Gaps = 8/270 (2%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ Sbjct: 14 AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLD 69 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLA Sbjct: 70 DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 V + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + +L+ Sbjct: 128 VCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T +NP Sbjct: 187 DGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNP 246 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + +A E ++V Y M+I FN Y+L++ Sbjct: 247 EQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|261868624|ref|YP_003256546.1| DNA polymerase III subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413956|gb|ACX83327.1| DNA polymerase III, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 367 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 2 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLL 61 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DI R L D A+I+ E + + S F L + P ++P Sbjct: 62 HAEQDGKFTIPAKKFLDICRSLPDNAEIAVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 119 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L D ++ + + + + + +++ + Sbjct: 177 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + ++V RL ++SS I Sbjct: 296 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRMRLTDASSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S A YV+MPMR+ Sbjct: 351 EDCEDAS---------AEYVIMPMRL 367 >gi|241759458|ref|ZP_04757562.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114] gi|241320240|gb|EER56573.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114] Length = 367 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A DI+R L D A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 SVGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ + Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367 >gi|58700013|ref|ZP_00374572.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533470|gb|EAL57910.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 332 Score = 195 bits (496), Expect = 8e-48, Method: Compositional matrix adjust. Identities = 117/336 (34%), Positives = 200/336 (59%), Gaps = 5/336 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N+I V + ++A G +++ A+ +I + ++ A+ Sbjct: 1 MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ Sbjct: 61 VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 119 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L+IL + +KV LS+ +I L + + Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FPNY+ VIP S DK + + L +DRVS++ S +++++K SL L + + Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 + + A ES+ V YNE P++I FN +YLL+++ I Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCI 331 >gi|167854884|ref|ZP_02477660.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] gi|167853951|gb|EDS25189.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] Length = 367 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 122/388 (31%), Positives = 215/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +V G T+ A DI R L D + IS F E+ V I S F L + P S+ Sbjct: 61 EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDEDR----VFIRADRSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS + + F + + L L+E T F+MA ++ RY+LNG+ F L+ +VATD Sbjct: 117 YPSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E++R++ + SV++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L + L++A+ R +I+S+ R + V+L+L+ + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADAEVLKRALVRAAILSNERFRGVRLALNQNLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + V + +D+S+S + Sbjct: 294 TANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQRV----RISLVDASSSCL 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N A YV+MPMR+ Sbjct: 350 I-----EDCDN-----ATAEYVIMPMRL 367 >gi|261380782|ref|ZP_05985355.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703] gi|284796246|gb|EFC51593.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703] Length = 367 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 211/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 IT +A DI+R L D A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 NVGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ + Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367 >gi|52424541|ref|YP_087678.1| DNA polymerase III subunit beta [Mannheimia succiniciproducens MBEL55E] gi|52306593|gb|AAU37093.1| DnaN protein [Mannheimia succiniciproducens MBEL55E] Length = 370 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 205/385 (53%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ Sbjct: 6 MQFIVSRDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTITGTDLEVELSTQAKLI 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A DI R L D A+I E E + + F L + P E+P+ Sbjct: 66 SGTEGKFTIPAKKFLDICRSLPDEAEIHVTFEEERAI---VRSARTKFNLATLPAEEYPN 122 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGHR Sbjct: 123 LADWQSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGHR 180 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + Q + S+IVPRK V E+ R+L + D+ ++ + + + + + ++ + + Sbjct: 181 LAVCTIAL-EQDLQNHSVIVPRKGVLELARLLEATDAPARLQIGTNNLRVQLANVVFTSK 239 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ V+P + D L + L+QA R +I+S+ R ++V+L L +++ +T Sbjct: 240 LIDGRFPDYRRVLPRNADHILEADWDVLKQAFVRAAILSTERFRSVRLQLDQNQMKITAT 299 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E ++V Y+ M++ FN Y+L++++ + V RL ++SS I Sbjct: 300 NPEQEEAEEIIDVSYSGNEMEVGFNVSYILDVLNALKC-----QRVRMRLTDASSSCLI- 353 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D +A YV+MPMR+ Sbjct: 354 ------ENCED--ASAEYVIMPMRL 370 >gi|229843948|ref|ZP_04464089.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1] gi|229812942|gb|EEP48630.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1] Length = 366 Score = 195 bits (496), Expect = 9e-48, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +DN ++ YV+MPMR+ Sbjct: 350 -------ENCEDN--SSEYVIMPMRL 366 >gi|219871633|ref|YP_002476008.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165] gi|219691837|gb|ACL33060.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165] Length = 367 Score = 195 bits (496), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 122/388 (31%), Positives = 214/388 (55%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 +V G T+ A DI R L D + IS F E+ V I S F L + P S+ Sbjct: 61 EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDEDR----VFIRADRSKFNLATLPASD 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS + + F + + L L+E T F+MA ++ RY+LNG+ F L+ +VATD Sbjct: 117 YPSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + ++ S+IVPRKAV E++R++ + SV++ + S + +++ + Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y+ V+P + D+ L + L+ A+ R +I+S+ R + V+L+L+ + L + Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADAEVLKHALVRAAILSNERFRGVRLALNQNLLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E ++V Y M++ FN YLL++++ + V + +D+S+S + Sbjct: 294 TANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQRV----RISLVDASSSCL 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D N A YV+MPMR+ Sbjct: 350 I-----EDCDN-----ATAEYVIMPMRL 367 >gi|268628289|gb|ACZ13543.1| DNA polymerase III beta chain [Xenorhabdus szentirmaii] Length = 276 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLVANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|145640666|ref|ZP_01796249.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021] gi|145274592|gb|EDK14455.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.4-21] Length = 366 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366 >gi|167010109|ref|ZP_02275040.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica FSC200] Length = 344 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 214/366 (58%), Gaps = 26/366 (7%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83 K+T+P+ +L ++ L+I AS + EI+ I S + + ++A +Y+IVR L + Sbjct: 1 KSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNE 60 Query: 84 GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNL 140 + I F + NE +V I +S F L S +P S E+ SF+L+ ++ Sbjct: 61 NSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPLIDSNINEQA--SFDLSQQDFHHI 115 Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-II 199 + + F+MA ++ RY+LNG+F+ IN L+ AV+TDGHR+++ E I +++ S I Sbjct: 116 ISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSASQSI 173 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +P+KA+ E+ +I+ + ++K+ L ++ + + + +LIDG +P+YQ VIP +N K Sbjct: 174 IPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTK 233 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 L V+ + ++ R SI+++ + + V+L++S ++L ++ +NPD KA + + V YN+ P Sbjct: 234 LLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQP 293 Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 M+ICFNYKYLL+II N+ S+E + LD+ N S + KD K N+ ++ Sbjct: 294 MEICFNYKYLLDII-NVLSEETMS----IYLDNPNMSALV----------KDEKDNSLFI 338 Query: 380 LMPMRI 385 +MPM+I Sbjct: 339 IMPMKI 344 >gi|268628369|gb|ACZ13583.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. caribbeanensis] gi|268628371|gb|ACZ13584.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. caribbeanensis] Length = 276 Score = 195 bits (495), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/270 (37%), Positives = 162/270 (60%), Gaps = 8/270 (2%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ Sbjct: 14 AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLD 69 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLA Sbjct: 70 DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEAEELR--TVATDGHRLA 127 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 V + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + +L+ Sbjct: 128 VCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP Sbjct: 187 DGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNP 246 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + +A E ++V Y M+I FN Y+L++ Sbjct: 247 EQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|237747156|ref|ZP_04577636.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS] gi|229378507|gb|EEO28598.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS] Length = 368 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 120/381 (31%), Positives = 211/381 (55%), Gaps = 22/381 (5%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASVDVCG 65 R ++L L I+ER++T+P+ ++L++ + ++ EI+I T A + + Sbjct: 8 RDNLLRPLQIVSGIVERRHTLPILANILIRKEGNAVSFLSTDTEIQIVTHAEIGTAEEDA 67 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124 + TV+A L DI+R L D A+I+ ++ + +S G S F LQ+ P ++FP+ + Sbjct: 68 TTTVAARKLLDILRALPDSAEIAISLNDK---RLVVSAGKSRFSLQTLPAADFPTVSQPL 124 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 EY S L+ LKNL+ +FAMA ++IRYYLNG+ +K AVATDGHRLA Sbjct: 125 EYQTSVTLSQKSLKNLLGMVYFAMAQQDIRYYLNGLLLQTGGNTIK--AVATDGHRLAFC 182 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 +++ + + +I+PRK + E+ R+L + V++ +S +++ + + +L++G Sbjct: 183 QMETEQEFSN-NDVIIPRKTILELQRLLEESEEPVRIDISGAQVRFVFGDVELISKLVEG 241 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +FP+Y VIP + ++ L++A+ R +IM+S + + ++ L+ L ++ N D Sbjct: 242 KFPDYTRVIPKGYKNKFTISRELLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 +AIE + + Y+ +DI FN YLL+++ N+ +DE+ L +NSS + D Sbjct: 302 EEAIEEIELDYDGDNIDIGFNVTYLLDVLGNLK-----NDEISIELGDANSSALMSVPD- 355 Query: 365 DSKNNKDNKVNAFYVLMPMRI 385 N D K YV+MPMRI Sbjct: 356 ----NTDFK----YVVMPMRI 368 >gi|268628271|gb|ACZ13534.1| DNA polymerase III beta chain [Xenorhabdus griffiniae] Length = 276 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL ++ + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDSDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L S LK L+E T F+MA +++RYYLNG+ F E+L+ +ATDGHRLAV Sbjct: 71 WQSEVEFSLPQSTLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMSI-GQDLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGAEMEIGFNVSYILDV 276 >gi|261363924|ref|ZP_05976807.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996] gi|288567936|gb|EFC89496.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996] Length = 367 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A DI+R L D A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSAIVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+ +F L+ K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 SVGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ + V L +++ ++ + Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367 >gi|268628281|gb|ACZ13539.1| DNA polymerase III beta chain [Xenorhabdus poinarii] gi|268628283|gb|ACZ13540.1| DNA polymerase III beta chain [Xenorhabdus poinarii] gi|268628285|gb|ACZ13541.1| DNA polymerase III beta chain [Xenorhabdus poinarii] Length = 276 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WKSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L ++ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGENPLQLQIGSNNIRAHVNDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEILDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628301|gb|ACZ13549.1| DNA polymerase III beta chain [Xenorhabdus mauleonii] Length = 276 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPATDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC ++QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLVANCDMIKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628333|gb|ACZ13565.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. tasmaniensis] Length = 276 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 102/270 (37%), Positives = 161/270 (59%), Gaps = 8/270 (2%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ Sbjct: 14 AGATTVPARKFFDIWRGLPDGAEISL----ELDGDRLLVRSGRSRFSLSTLPAADFPNLD 69 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLA Sbjct: 70 DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 V + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+ Sbjct: 128 VCSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP Sbjct: 187 DGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNP 246 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + +A E ++V Y M+I FN Y+L++ Sbjct: 247 EQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|290953774|ref|ZP_06558395.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312852|ref|ZP_06803583.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica URFT1] Length = 351 Score = 194 bits (494), Expect = 1e-47, Method: Compositional matrix adjust. Identities = 121/366 (33%), Positives = 214/366 (58%), Gaps = 26/366 (7%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83 K+T+P+ +L ++ L+I AS + EI+ I S + + ++A +Y+IVR L + Sbjct: 8 KSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNE 67 Query: 84 GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNL 140 + I F + NE +V I +S F L S +P S E+ SF+L+ ++ Sbjct: 68 NSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPLIDSNINEQA--SFDLSQQDFHHI 122 Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-II 199 + + F+MA ++ RY+LNG+F+ IN L+ AV+TDGHR+++ E I +++ S I Sbjct: 123 ISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSASQSI 180 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +P+KA+ E+ +I+ + ++K+ L ++ + + + +LIDG +P+YQ VIP +N K Sbjct: 181 IPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTK 240 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 L V+ + ++ R SI+++ + + V+L++S ++L ++ +NPD KA + + V YN+ P Sbjct: 241 LLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQP 300 Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 M+ICFNYKYLL+II N+ S+E + LD+ N S + KD K N+ ++ Sbjct: 301 MEICFNYKYLLDII-NVLSEETMS----IYLDNPNMSALV----------KDEKDNSLFI 345 Query: 380 LMPMRI 385 +MPM+I Sbjct: 346 IMPMKI 351 >gi|255066617|ref|ZP_05318472.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256] gi|255049201|gb|EET44665.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256] Length = 367 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A DI+R L D A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSAIVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+ +F L+ K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 SVGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ + V L +++ ++ + Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367 >gi|268628323|gb|ACZ13560.1| DNA polymerase III beta chain [Xenorhabdus innexi] gi|268628325|gb|ACZ13561.1| DNA polymerase III beta chain [Xenorhabdus innexi] Length = 276 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ T+ A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ V+TDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVSTDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKILEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628277|gb|ACZ13537.1| DNA polymerase III beta chain [Xenorhabdus vietnamensis] Length = 276 Score = 194 bits (494), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 103/269 (38%), Positives = 162/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMHI-GQNLPSHSVIVPRKGVIELMRLLDGGDNLLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|301169718|emb|CBW29319.1| DNA polymerase III, beta subunit [Haemophilus influenzae 10810] Length = 366 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSS---------CEYVIMPMRL 366 >gi|268628329|gb|ACZ13563.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. tasmaniensis] gi|268628331|gb|ACZ13564.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. tasmaniensis] Length = 276 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 102/270 (37%), Positives = 161/270 (59%), Gaps = 8/270 (2%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ Sbjct: 14 AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLD 69 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLA Sbjct: 70 DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 V + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+ Sbjct: 128 VCSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP Sbjct: 187 DGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNP 246 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + +A E ++V Y M+I FN Y+L++ Sbjct: 247 EQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|68249577|ref|YP_248689.1| DNA polymerase III subunit beta [Haemophilus influenzae 86-028NP] gi|68057776|gb|AAX88029.1| DNA polymerase III, beta chain [Haemophilus influenzae 86-028NP] Length = 366 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKTVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|153002881|ref|YP_001377206.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. Fw109-5] gi|152026454|gb|ABS24222.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. Fw109-5] Length = 376 Score = 194 bits (493), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 125/393 (31%), Positives = 210/393 (53%), Gaps = 25/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + +++ + LG + I+E+K+T+P+ HVLL+A G L + A+ ++ ++ Sbjct: 1 MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G++ VSA LY+IVR L + Q++ + + + + G S F + P +F Sbjct: 61 CEVLKEGALAVSARHLYEIVRALPE-QQVTLKRAHN--NYLEVRSGPSEFRIVGLPAEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E V ++ L +++ERT FA++ +E RY LNG++F E L+L VATDG Sbjct: 118 PALPRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRL--VATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS------SKDSSVKVSLSESRIHLNI 232 HRL+++E I +I+P+K + E+ ++L + K+ E+ Sbjct: 176 HRLSLSERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRR 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + +S+RLI+G FP+Y+ VIP +K LR+ + + RVS++SS + AVKL L Sbjct: 236 PGVILSMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQ 295 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L + NPD+G+A E + V Y P+ I FN +YL++++ + S EV L Sbjct: 296 GTLKVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKS-----AEVQLELAD 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +RG D+ KD A V+MPMRI Sbjct: 351 DLSPGVMRGGDE-----KDAGFTA--VVMPMRI 376 >gi|117923320|ref|YP_863937.1| DNA polymerase III subunit beta [Magnetococcus sp. MC-1] gi|117607076|gb|ABK42531.1| DNA polymerase III, beta subunit [Magnetococcus sp. MC-1] Length = 376 Score = 194 bits (492), Expect = 2e-47, Method: Compositional matrix adjust. Identities = 123/393 (31%), Positives = 201/393 (51%), Gaps = 25/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R L+ L ++E++NT+P + LL+A+ L + A+ E+ + PA Sbjct: 1 MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+I VSA L++IVR+L Q S +E G + ++ G + F L FP Sbjct: 61 VESSGAIAVSARKLFEIVREL---PQDSLRLRSEAGERLVLTCGRARFTLVGIRADIFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCA------ 173 E SF L+ L ++ +THFAM+ +E RY LNGI H ++ D +L Sbjct: 118 FPETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVR 177 Query: 174 -VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+AE+ + + + +I+PRK V EI +++ D +V++ L E+ I ++ Sbjct: 178 IVATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSK 237 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + ++ +L+ G FPNYQ VIP N L + L V R+ ++S + + ++++LSS Sbjct: 238 PGIVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSS 297 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D + ++ NP+ A E M + M + FN +YL EI+ + D V +L Sbjct: 298 DHIKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANG-----DTVRMKLRD 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V + + + YVLMPMR+ Sbjct: 353 EESPVLV---------EEHSATGYLYVLMPMRV 376 >gi|268628351|gb|ACZ13574.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp. australis] Length = 276 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628267|gb|ACZ13532.1| DNA polymerase III beta chain [Xenorhabdus kozodoii] Length = 276 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPATDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ +ATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYILDV 276 >gi|260774540|ref|ZP_05883453.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14] gi|260610446|gb|EEX35652.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14] Length = 308 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 104/322 (32%), Positives = 182/322 (56%), Gaps = 20/322 (6%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 GSITV A DI R L D A I+ E G ++I G S F L + P ++FP+ ++ Sbjct: 7 AGSITVPARKFLDICRGLPDSAVITVLLE---GDRISIRSGRSRFSLATLPANDFPNIED 63 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + + + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ AVATDGHR+AV Sbjct: 64 WQSDIDITVTQAELRGLIEKTQFSMANQDVRYYLNGMMFEIDASTLR--AVATDGHRMAV 121 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 A+ V+Q II PRK + E++++L + + V + + S + + + +L+D Sbjct: 122 AQT-TVSQALANKQIIFPRKGILELVKLLDAPEQPVVLQIGASNLRAEVNQFVFTSKLVD 180 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + +K L C LRQA R +I+S+ + + V+++L+ + +T +NP+ Sbjct: 181 GRFPDYRRVLPQNTNKTLITGCDELRQAFSRAAILSNEKFRGVRVNLAEGTMRITANNPE 240 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A E ++V + ++I FN Y++++++ + D+V + +N+S I + Sbjct: 241 QEEAEEMLDVSFTGEAIEIGFNVSYVIDVLNTLRC-----DQVRISMSDANASALIENVE 295 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 296 DDS---------AMYVVMPIRL 308 >gi|268628335|gb|ACZ13566.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. thracensis] gi|268628337|gb|ACZ13567.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. thracensis] Length = 276 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|293391840|ref|ZP_06636174.1| DNA polymerase III, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952374|gb|EFE02493.1| DNA polymerase III, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 366 Score = 194 bits (492), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 1 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLF 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A D+ R L D A+I+ E + + S F L + P ++P Sbjct: 61 HAEHDGKFTIPAKKFLDLCRSLPDNAEITVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L D ++ + + + + + +++ + Sbjct: 176 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + ++V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRIRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S A YV+MPMR+ Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366 >gi|251791867|ref|YP_003006587.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533254|gb|ACS96500.1| DNA polymerase III, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 366 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 1 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTKTPLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DI R L + A+I+ E + + S F L + P ++P Sbjct: 61 HAEQDGKFTIPAKKFLDICRSLPENAEITVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L D ++ + + + + + +++ + Sbjct: 176 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + ++V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S A YV+MPMR+ Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366 >gi|315634816|ref|ZP_07890098.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter segnis ATCC 33393] gi|315476368|gb|EFU67118.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter segnis ATCC 33393] Length = 366 Score = 193 bits (491), Expect = 3e-47, Method: Compositional matrix adjust. Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 1 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITGTDLEVELSTQTPLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DI R L D A+I+ E + + S F L + P ++P Sbjct: 61 HAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L + ++ + + + + + +++ + Sbjct: 176 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSEQPARLQIGTNNLRIQLNNITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + ++V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S A YV+MPMR+ Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366 >gi|268628339|gb|ACZ13568.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. temperata] gi|268628341|gb|ACZ13569.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. temperata] gi|268628343|gb|ACZ13570.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. temperata] Length = 276 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 102/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSDVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|145632378|ref|ZP_01788113.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655] gi|145637298|ref|ZP_01792959.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH] gi|144987285|gb|EDJ93815.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655] gi|145269550|gb|EDK09492.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH] Length = 366 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|86156432|ref|YP_463217.1| DNA polymerase III subunit beta [Anaeromyxobacter dehalogenans 2CP-C] gi|85772943|gb|ABC79780.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 375 Score = 193 bits (490), Expect = 4e-47, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 213/392 (54%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 M++ + ++ + LG + I+E+K+T+P+ HVLL+A G L + A+ ++ ++ Sbjct: 1 MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VSA LY+IVR L + Q K+ + + G S F + P +FP Sbjct: 61 EVLKEGAVAVSARHLYEIVRALPE--QTVTLKKAH-NNYLEVKSGPSEFRIVGLPAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V ++ ++L ++ERT FA++ +E RY LNG++F + L+L VATDGH Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNIE 233 RL+++E + A +I+P+K + E+ ++L+ S K+ E+ Sbjct: 176 RLSLSERTVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +RLI+G FP+Y+ VIP + +K +V + + R+S++SS + AVKL LS D Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRARFLETLRRISLLSSDKAHAVKLDLSKD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NPD+G+A E + V Y P+ I FN +Y++E++ + S +EVVF L Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKS-----NEVVFELADD 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G ++ D A V+MPMRI Sbjct: 351 LSPGVLKGGEE-----ADQGFTA--VVMPMRI 375 >gi|213622043|ref|ZP_03374826.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 300 Score = 193 bits (490), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 104/304 (34%), Positives = 175/304 (57%), Gaps = 7/304 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPD 303 +NP+ Sbjct: 295 NNPE 298 >gi|77917620|ref|YP_355435.1| DNA polymerase III subunit beta [Pelobacter carbinolicus DSM 2380] gi|77543703|gb|ABA87265.1| DNA polymerase III, beta subunit [Pelobacter carbinolicus DSM 2380] Length = 372 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 116/348 (33%), Positives = 197/348 (56%), Gaps = 13/348 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++E+ L+ L I+E+KNTIP+ +VL++A D + + A+ E+ + + PAS Sbjct: 1 MNFSIEKEVFLKGLARVQGIVEKKNTIPILANVLIEAEDDHIRLTATDLEVGMKASYPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119 V G ITVSA L++I+++L + +ISF KEN + I G S F + EFP Sbjct: 61 VTSAGRITVSAKKLFEIIKELPE-KEISFTAKEN---CWIEIRCGKSLFNVVGLSADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 + + F++ +LK L+E+T F+M+T+E +Y LNGI+ E++ + L VATD Sbjct: 117 YFPQIDKEQFFQIPGDILKRLIEKTAFSMSTDESKYNLNGIYLRAMEDEGRQILRFVATD 176 Query: 178 GHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 GHRLA+ + + V +AK +I PRK V E+ +I + V + ++ + Sbjct: 177 GHRLALMQTPLDCSHVEPLAK--GVIFPRKGVLELRKIAEEGNGEVLLGFMDNNAVIKKS 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +RL+DG+FP+Y VIP +ND + + A+ R++I+SS + + VK+ + Sbjct: 235 QTVIVMRLVDGDFPDYNRVIPLNNDLKANIPREEFLHALRRMAILSSEKSKGVKIDFQEN 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +L ++ NP+ G A E + Y E + I FN +YL++I+ N+ S++V Sbjct: 295 QLTLSSSNPEFGDAREDFEIEYAEGDLSIGFNARYLIDILANLDSEKV 342 >gi|238021643|ref|ZP_04602069.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147] gi|237866257|gb|EEP67299.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147] Length = 367 Score = 192 bits (489), Expect = 5e-47, Method: Compositional matrix adjust. Identities = 121/385 (31%), Positives = 217/385 (56%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L A I+ERK+T+P+ +VLL++ G + I A+ EI+I S Sbjct: 4 LQTERDALLKPLQTATGIVERKHTLPILANVLLESKGGKVHILATDLEIQIHTQGADSEQ 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 +T +A L DI+R L + A + E++L + G S F LQ+ P ++FP+ Sbjct: 64 GDFQLTTNAKKLQDILRALPENATVQLDLDEHKL----TLKAGKSRFNLQTLPPADFPTM 119 Query: 122 KEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ F L LK+++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 NISETTHTQFSLPQETLKHMINQVQYSMAVQDIRYYLNGLLLQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++AK +I+PRK V E++++L+ ++++ L ++++ ++ + Sbjct: 178 LAYASTTIEAELAKQ-DVILPRKTVLELVKLLNQPKEAIQIELLDNQVRFQCGDTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP+Y VIP NDK +N L A++R +I+++ + + V+L L+ L +T Sbjct: 237 VIDGKFPDYNRVIPLDNDKIFVINRATLLGALERSAILANEKFRGVRLQLAPGSLKITCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN ++L++++ + +SD++ ++ F +N S I Sbjct: 297 NSEQEEASEELEIAYAGESLEVGFNIQFLMDVLRSANSDDI---QIAF--GDANRSTLI- 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 351 ----TLPNNAEFK----YIVMPMRI 367 >gi|302877247|ref|YP_003845811.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans ES-2] gi|302580036|gb|ADL54047.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans ES-2] Length = 368 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 129/385 (33%), Positives = 203/385 (52%), Gaps = 26/385 (6%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-- 62 +E+ +L+ L I+ERK T+P+ +VL++ G + A+ EI+IT I D Sbjct: 6 IEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADHE 65 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 +ITV L +I+R L D +++S KEN+ I S F LQS P +FP+ Sbjct: 66 SNAAITVGGKKLQEILRILPDQSKVSIEVKENK----AQIKSNKSKFNLQSLPAQDFPTL 121 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L+ LK L FAMA +++RYYLNG+ F I ED AVATDGHR Sbjct: 122 SNQLADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVI--EDNIFRAVATDGHR 179 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + I + K+ II+PRKA+ E+ ++LS D +++ S ++ + ++ + Sbjct: 180 LAYNAIAIESSSEKI-EIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FP+YQ VIP + L +N T ++QA+ R +I+S+ + + V+ L+ LC+ Sbjct: 239 LIEGKFPDYQRVIPNYTN-HLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISS 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A + Y+ +DI FN YL+ D +SS V + +F + NSS+ I Sbjct: 298 NSEQEEAQVEIETDYHGEAIDIGFNVNYLM---DGLSS--VHSEMAIFSFGNPNSSILIT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + YV+MPMRI Sbjct: 353 SPD---------DLEFRYVVMPMRI 368 >gi|148826360|ref|YP_001291113.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE] gi|148716520|gb|ABQ98730.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE] Length = 366 Score = 192 bits (489), Expect = 6e-47, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSHRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366 >gi|292490172|ref|YP_003525611.1| DNA polymerase III subunit beta [Nitrosococcus halophilus Nc4] gi|291578767|gb|ADE13224.1| DNA polymerase III, beta subunit [Nitrosococcus halophilus Nc4] Length = 367 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ER +I+ L C ++ER++T+P+ +VLL + L + A+ E+EI + Sbjct: 1 MQFSIEREEIVRHLATVCGVVERRHTLPILFNVLLSVEEDRLSLTATDLEVEIRTTLEVL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TVSA DI R L A++ ++E G + ++ G S F L + P +FPS Sbjct: 61 HPKGGKTTVSARKFLDICRALPARAELEV--QHEKG-QFHVHSGHSRFTLSTLPAEDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T E V EL + LK L+ RT F MA +++RYYLNG+ + + + AVATDGHR Sbjct: 118 TDSLEEVVELELTQAELKQLLHRTVFCMAHQDVRYYLNGL--LLELGEETVYAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAVA ++ + + I+PRKAV E++R+L + V++ +++ + LS S Sbjct: 176 LAVASLEKGPRREGVQIQSIIPRKAVLELVRLLEESNEPVRLKFGTNQMGAEFQGLSFST 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG+FP+Y+ VIP +K + +QA+ RV+I+++ + + V+L LS+ KL TV Sbjct: 236 KLIDGQFPDYKRVIPVGCEKRFVADREQFKQALGRVNILTNDKYRGVRLHLSNLKLQATV 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + A E + V Y +I FN YL+++++ I++ ++V ++NSS I Sbjct: 296 TNLEQESAEEELEVEYQGESFEIAFNNSYLIDVLNIINT-----EQVKLEFTNANSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + YV+MPMR+ Sbjct: 351 ---------TPIGEVGSKYVVMPMRL 367 >gi|268628275|gb|ACZ13536.1| DNA polymerase III beta chain [Xenorhabdus romanii] Length = 276 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 99/268 (36%), Positives = 162/268 (60%), Gaps = 6/268 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+ TV A +DI R L DGA+IS ++ G + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSLSTLPASDFPNLDDW 71 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 72 QSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVC 129 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+DG Sbjct: 130 SMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDG 188 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 FP+Y+ V+P + +K L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 189 RFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQ 248 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y ++I FN Y+L++ Sbjct: 249 EEAEEIVDVNYQGSEVEIGFNVSYVLDV 276 >gi|268628269|gb|ACZ13533.1| DNA polymerase III beta chain [Xenorhabdus ehlersii] Length = 276 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 100/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL ++ + + G S F L + P S+FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDSDRILVRSGRSRFSLSTLPASDFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ ++TDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TISTDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMSI-GQDLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYILDV 276 >gi|268628345|gb|ACZ13571.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii NC19] gi|268628347|gb|ACZ13572.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii] Length = 276 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETESEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|114778881|ref|ZP_01453678.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1] gi|114550850|gb|EAU53416.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1] Length = 366 Score = 192 bits (488), Expect = 7e-47, Method: Compositional matrix adjust. Identities = 126/386 (32%), Positives = 207/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ R+ +L+L+ I+E+++TIP+ +VL++AN + + A+ E+ I I S Sbjct: 1 MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHIDGS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++I+R+L +S N ++I G S F + + P E+P+ Sbjct: 61 VEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGF---ISIVSGSSRFRVNTRPADEYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVATDGH 179 E+E L + L +++ T FAM+T+E R YL G F +++ ++L+L V TDGH Sbjct: 118 MAEQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFELDDSQNLRL--VTTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++E+ + Q A S IVP+KAV EI ++ V++ +SE +I L S +++ Sbjct: 176 RLALSEIRL-QQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LID FP YQ+VIP +N R+ T Q + R I+++ ++L S L ++ Sbjct: 235 KLIDARFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + ++ E + Y + I FN +YL + + I + V L S V I Sbjct: 295 HNSEQEESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRA-----PSVCMELKDELSPVLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 RG+D + YV+MPMRI Sbjct: 350 RGEDDEQSR---------YVIMPMRI 366 >gi|310817862|ref|YP_003950220.1| DNA polymerase III subunit beta [Stigmatella aurantiaca DW4/3-1] gi|309390934|gb|ADO68393.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 368 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 115/386 (29%), Positives = 210/386 (54%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + ++ + L A I+ERK T+P+ +VL+ A + + A +I + PA Sbjct: 1 MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T++A ++DIV+ L D AQ++ K V+I+ G ++F + E+P Sbjct: 61 VSKPGAVTLNAKYIFDIVQNLPD-AQVTLKKLAN--NYVDIASGSAHFKIVGMAAEEYPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +EE +++ + L ++++T FA++++E RY LNG++F + K+ VATDGHR Sbjct: 118 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFE-PQSGGKVRMVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E ++ +I+PRK + E+ R+L + D+ + +E+ L+M + Sbjct: 177 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG+FP YQ VIP +K + V+ + + R++++S+ + AV++ L +KL +T Sbjct: 237 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD+G+A +++ + Y + I FN +YL++++ + DEV F L +S + Sbjct: 297 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A V+MPMR+ Sbjct: 352 HAPG-------DRSFTA--VVMPMRV 368 >gi|268628353|gb|ACZ13575.1| DNA polymerase III beta chain [Photorhabdus sp. Q614] gi|268628355|gb|ACZ13576.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp. asymbiotica] Length = 276 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628349|gb|ACZ13573.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii] Length = 276 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ TV A +DI R L DGA+IS EL G + + G S F L + P ++FP+ + Sbjct: 15 GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV Sbjct: 71 WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + +L+D Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L S ++L +T +NP+ Sbjct: 188 GRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332 +A E ++V Y M+I FN Y+L++ Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|145630088|ref|ZP_01785870.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021] gi|144984369|gb|EDJ91792.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021] Length = 366 Score = 192 bits (488), Expect = 8e-47, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R +L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISREHLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|94676682|ref|YP_588601.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219832|gb|ABF13991.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 370 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 130/392 (33%), Positives = 216/392 (55%), Gaps = 29/392 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER +L+ L + ++ +P+ H+LLQ + L + + EIEI I + Sbjct: 1 MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G I V A L+DI R L + A I+ E GT + + G S F L + P + FP Sbjct: 61 KVDKIGIIMVCARKLFDICRSLPEDALINITLE---GTVMLVIAGRSRFSLMTLPATNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F L LK +++ T F+MA +++RY LNG+ F I ++L+ VATDGH Sbjct: 118 KIADGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235 RLA + I + ++P SIIVPRK V E+LRIL D+ VK+ + + I + I + Sbjct: 176 RLAACTIYINV-LKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNY 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + LI+G FP+Y +V+P + +K L+V ++QA+ RV+I+S+ + + V+L L ++L Sbjct: 235 IFTSNLIEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQL 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T N + +A E ++V Y +++ FN Y+L+I+ + D V ++F ++S+ Sbjct: 295 KITAKNLEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKCDTV---RLLFNNEASSV 351 Query: 356 SVFIRGKDKDSKNNKDNKVN--AFYVLMPMRI 385 + D+ +N + Y++MPMR+ Sbjct: 352 QI-------------DDCMNPMSIYIVMPMRM 370 >gi|253997715|ref|YP_003049778.1| DNA polymerase III subunit beta [Methylovorus sp. SIP3-4] gi|253984394|gb|ACT49251.1| DNA polymerase III, beta subunit [Methylovorus sp. SIP3-4] Length = 367 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 117/387 (30%), Positives = 209/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+ER++T+P+ ++LL+A D + + A+ E++I+ A+ Sbjct: 1 MNIKINRDTLLKPLSSVTSIVERRHTLPILSNLLLEAKDEKIVLTATDLEMQISLALQTP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 V S T+SA L DI R L + A+I+ + + + G S F LQ+ P +++P Sbjct: 61 VGGELSTTISAKKLLDICRSLPENAEITMATAE---SRIQVKTGKSRFNLQTLPAADYPV 117 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 TK Y+ + LK L ++ FAMA ++IRYYLNG+ F +N +L V TDG Sbjct: 118 MTKATGTTYTVVTIDQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ ++ AQ + +I+PRK V E++++L + V + ++ +++ + + + Sbjct: 176 HRLSFTSTEL-AQSYEKQELILPRKTVIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP + V+ + A+ R SI+S+ + + +++ L SD L + Sbjct: 235 SKVIDGKFPDYTRVIPVGHKNSFNVDRMTILLAMQRASILSNEKYRGIRMVLGSDSLRLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y +DI FN Y++++++N++ D V F +NSS Sbjct: 295 STNSEQEEAEEELEIAYAGDSLDIGFNVTYMIDVLNNVNC-----DSVTFSFADANSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMRI Sbjct: 350 VTVADDETYK---------YVVMPMRI 367 >gi|134093296|ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans] gi|133737199|emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans] Length = 368 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 204/385 (52%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61 + +R +L L I+ER++T+P+ ++L++ + + ++ E++IT A S Sbjct: 4 VKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + S TV+A L DI+R L D +S N+ + + G S F LQ+ EFP+ Sbjct: 64 NEIASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTV 120 Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+Y L LK+L HF+MA ++IRYYLNG+ ++ +++ AVATDGHR Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNV--IAVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +V + A+ +I+PRK + E+ R+L D V + ++ S++ L + + + Sbjct: 179 LAFCQVATEQEFARQ-EVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y V+P + L +++ R +IM+S + + V+ +S + ++ Sbjct: 238 LVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISST 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N D +A+E + + Y +DI FN YLL++++N+ D + L +NSS I Sbjct: 298 NADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DNINIALGDANSSALIT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D N D K YV+MPMRI Sbjct: 353 VPD-----NPDFK----YVVMPMRI 368 >gi|197120423|ref|YP_002132374.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. K] gi|196170272|gb|ACG71245.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. K] Length = 375 Score = 192 bits (487), Expect = 9e-47, Method: Compositional matrix adjust. Identities = 122/392 (31%), Positives = 214/392 (54%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 M++ + ++ + LG + I+E+K+T+P+ HVLL+A G L + A+ ++ ++ Sbjct: 1 MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VSA LY+IVR L + ++ K + + + G S F + P +FP Sbjct: 61 EVVKEGAVAVSARHLYEIVRALPE-QSVTLKKAHN--NYLEVKSGPSEFRIVGLPAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V ++ ++L ++ERT FA++ +E RY LNG++F + L+L VATDGH Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNIE 233 RL+++E + A +I+P+K + E+ ++L+ S K+ E+ Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +RLI+G FP+Y+ VIP + +K +V + + R+S++SS + AVKL LS D Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NPD+G+A E + V Y P+ I FN +Y++E++ + S +EVVF L Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKS-----NEVVFELADD 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G ++ D A V+MPMRI Sbjct: 351 LSPGVLKGGEE-----ADQGFTA--VVMPMRI 375 >gi|118594215|ref|ZP_01551562.1| DNA polymerase III, beta subunit [Methylophilales bacterium HTCC2181] gi|118439993|gb|EAV46620.1| DNA polymerase III, beta subunit [Methylophilales bacterium HTCC2181] Length = 367 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 219/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 M I + R +L+ L + I+E+++ +P+ ++LL+ D L+ A+ E++IT Sbjct: 1 MNIKINRDVLLKPLSNVSGIVEKRHALPILSNLLLEGQDNNSLKFTATDLEVQITLNAKT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V SIT++A L+DI R L +G+ I E ++V + G S F LQ+ P ++P Sbjct: 61 EVPTDFSITIAARKLFDITRSLPEGSTIDLQVEE---SKVVLKAGKSKFNLQTLPAKDYP 117 Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 K EE + + LK ++++ F+MA ++IRYYLNG+ F ++ + KL V TDG Sbjct: 118 VMKLSEEEKKLIRVPQNQLKAILKQVDFSMAQQDIRYYLNGLLFEVDGK--KLNIVGTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ +++ K +II PRK + E++++L V++ L++++ + + + +++ Sbjct: 176 HRLSFTSLELKEPQEKFQTII-PRKTILELIKLLDETAEEVEIQLTKNQAYFSFQEINLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP ++ + ++ T L ++ R SI+S+ + + +++ + +L + Sbjct: 235 SKVIDGKFPDYHRVIPVGHENKFDIDRTQLLLSMQRASILSNEKYRGIRMVIEKSQLKLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +N + +A E +++ Y+ +DI FN YL++++ NI ++++ F DSS+S + Sbjct: 295 SNNSEQEQAEEELDITYDGPSIDIGFNVTYLIDVLTNIQAEKL---SFAFN-DSSSSCLI 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 K+ D K YV+MPMRI Sbjct: 351 TIPKNDDYK----------YVVMPMRI 367 >gi|257091665|ref|YP_003165306.1| DNA polymerase III subunit beta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044189|gb|ACV33377.1| DNA polymerase III, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 376 Score = 192 bits (487), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 126/394 (31%), Positives = 215/394 (54%), Gaps = 32/394 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I R +L L I+ER++T+P+ +VLL+ +L + A+ EI+IT +V Sbjct: 4 IKTRRDTLLGPLQAVSGIVERRHTLPILSNVLLEKRGDVLTLLATDIEIQITTWSTGAVG 63 Query: 63 VC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G++TV A L +I+R L + A +S +++ + ++ G S F LQ+ P +FP Sbjct: 64 EGDGAVTVGARKLQEILRSLPESADVSLILDDK---RLQLTAGKSRFSLQTLPADDFPCM 120 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F ++ ++L+ +T ++MA +++RYYLNG+ ++ +L+ AVATDGHR Sbjct: 121 ALSEGETKKFTVSQKQFRHLLAQTQYSMAAQDVRYYLNGLLLIVDGSELR--AVATDGHR 178 Query: 181 LAVAE--VDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 LA + +D AQ + P +IVPRK V E+ R+L+ D + + + ++I Sbjct: 179 LAYSSMPLDDAAQAPREPGAARQELIVPRKTVLELSRLLTDTDEPLSIEMLATQIRFQFG 238 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S+ +LIDG FP+Y+ VIP + + V+ L Q++ R +I+++ + + V+L LS+ Sbjct: 239 HVSLVSKLIDGRFPDYERVIPATLRNVVSVSRGLLLQSMIRAAILTNEKFRGVRLILSAG 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + N + +A E + V YN P+D+ FN YLL++++N VDD + + + + Sbjct: 299 SLKIMAANAEQEEAQEEIEVEYNGEPLDVGFNVAYLLDVLNN-----TVDDTIEWGFNDA 353 Query: 354 NSSVF--IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS I G D+ YV+MPMRI Sbjct: 354 NSSALLTIPGNDRFK-----------YVVMPMRI 376 >gi|297537199|ref|YP_003672968.1| DNA polymerase III subunit beta [Methylotenera sp. 301] gi|297256546|gb|ADI28391.1| DNA polymerase III, beta subunit [Methylotenera sp. 301] Length = 366 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+E+++T+P+ ++LL+A + + A+ E++I+ +I ++ Sbjct: 1 MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSIESA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 S T+SA L DI R L D ++I+ + + + + G S F LQ+ P +++P Sbjct: 61 TTGDFSTTISAKKLLDICRSLPDSSEINMATND---SRITLKAGKSRFNLQTLPAADYPV 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 TK + + LK+L+++ FAMA ++IRYYLNG+ F + +L V TDGH Sbjct: 118 MTKTQGESTLVTIGQRQLKDLLKQVEFAMAQQDIRYYLNGLLFEVVAN--RLNIVGTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ ++ K +I+PRK V E++++L D V++ L+ ++++ + + Sbjct: 176 RLSFTSTELKQNYDKQ-DVILPRKTVIELIKLLDDSDEDVQIELASNQVNFSFSHFKLIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG+FP+Y VIP + + + A+ R SI+S+ + + +++ LS++ L + Sbjct: 235 KVIDGKFPDYNRVIPTGHQNSFTTDRVGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D +A E + + Y +DI FN YL+++++N SS ++ F +NSS I Sbjct: 295 TNSDQEEAEEELEIDYAGDSLDIGFNVTYLIDVLNNTSS-----EQATFSFADANSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 NN D K YV+MPMRI Sbjct: 350 T-----VPNNTDYK----YVVMPMRI 366 >gi|220915125|ref|YP_002490429.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219952979|gb|ACL63363.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 375 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 123/392 (31%), Positives = 212/392 (54%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 M++ + ++ + LG + I+E+K+T+P+ HVLL+A G L + A+ ++ ++ Sbjct: 1 MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VSA LY+IVR L + Q K+ + + G S F + P +FP Sbjct: 61 EVLKEGAVAVSARHLYEIVRALPE--QTVTLKKAH-NNYLEVKSGPSEFRIVGLPAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V + ++L ++ERT FA++ +E RY LNG++F + L+L VATDGH Sbjct: 118 ALPRFDKVPFAPVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNIE 233 RL+++E + A +I+P+K + E+ ++L+ S K+ E+ Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEQPEAKLGFVENSAIFRRP 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +RLI+G FP+Y+ VIP + +K +V + + R+S++SS + AVKL LS D Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NPD+G+A E + V Y P+ I FN +Y++E++ + S +EVVF L Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKS-----NEVVFELADD 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G ++ D A V+MPMRI Sbjct: 351 LSPGVLKGGEE-----ADQGFTA--VVMPMRI 375 >gi|254483315|ref|ZP_05096546.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036410|gb|EEB77086.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2148] Length = 326 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 195/345 (56%), Gaps = 20/345 (5%) Query: 42 LEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100 L + + E+E+ G + AS G +T+ A L DI + L +G++ISF E+ ++V Sbjct: 1 LSLTGTDLEVELVGRVKLASAGDSGELTLPARKLVDICKSLPEGSEISFAAED---SKVT 57 Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160 + G S F L + P EFP+ ++ + F + LK L++RT FAMA +++RYYLNG+ Sbjct: 58 VKSGRSRFTLSTLPAREFPNVEDSMGTHQFTIKQGQLKRLIDRTGFAMAQQDVRYYLNGM 117 Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 + + ++ LK+ VATDGHRLA+ + + +I+PRK V E+ R+L ++D + Sbjct: 118 LWELKDKQLKV--VATDGHRLALCTLPEKIEAGDDAQVILPRKGVLELARLLLAEDEDIA 175 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + + I E + + +L+DG+FP+YQ V+P S +K + + LRQA R +I+S+ Sbjct: 176 IVIGSNHIRATTEEFTFTSKLVDGKFPDYQRVLPRSPNKIVLGSRLELRQAFTRTAILSN 235 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + V+L L+ + L + +NP+ +A E++ V Y +++ FN YLL+++ +S Sbjct: 236 EKYRGVRLKLTDNSLDIVANNPEQEEAEEAVPVDYQGESLEVGFNVSYLLDVLAVLSG-- 293 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ L NSS + D+ ++ YV+MPMR+ Sbjct: 294 ---EQIKLSLSDPNSSALLEESDEG---------DSLYVVMPMRL 326 >gi|115378321|ref|ZP_01465487.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|115364675|gb|EAU63744.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 444 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 115/386 (29%), Positives = 210/386 (54%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + ++ + L A I+ERK T+P+ +VL+ A + + A +I + PA Sbjct: 77 MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 136 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T++A ++DIV+ L D AQ++ K V+I+ G ++F + E+P Sbjct: 137 VSKPGAVTLNAKYIFDIVQNLPD-AQVTLKKLAN--NYVDIASGSAHFKIVGMAAEEYPK 193 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +EE +++ + L ++++T FA++++E RY LNG++F + K+ VATDGHR Sbjct: 194 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFE-PQSGGKVRMVATDGHR 252 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E ++ +I+PRK + E+ R+L + D+ + +E+ L+M + Sbjct: 253 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 312 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG+FP YQ VIP +K + V+ + + R++++S+ + AV++ L +KL +T Sbjct: 313 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 372 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD+G+A +++ + Y + I FN +YL++++ + DEV F L +S + Sbjct: 373 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 427 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A V+MPMR+ Sbjct: 428 HAPG-------DRSFTA--VVMPMRV 444 >gi|57239515|ref|YP_180651.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58579497|ref|YP_197709.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Welgevonden] gi|57161594|emb|CAH58522.1| DNA polymerase III, beta subunit [Ehrlichia ruminantium str. Welgevonden] gi|58418123|emb|CAI27327.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 375 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/390 (32%), Positives = 212/390 (54%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + V + +L+ L + I+E++++I V V ++A D + + ++ +I I +I A+ Sbjct: 7 LNFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISAN 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESEF 118 V V G I VSA LLYDIVRKL + +I F K+ L E + + F L +F Sbjct: 67 VLVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKDGRLTIECS----RTEFSLPIVDIEKF 122 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + E F L S L NL +T FA++ EE R+ LNG++ H + LC ATDG Sbjct: 123 PVIEHNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTSNG--ALCCAATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNIESLS 236 HRL++A++ V I IIVP+K V EIL+I+S +SS + +SLS +I + Sbjct: 181 HRLSLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYI 240 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++IDG FP+Y ++IP S+DK + ++ L A+DRVS++ +++ +KL + +KL Sbjct: 241 LISKVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLI 300 Query: 297 MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + D G A E + + Y+ + I N +YL+E + + + +N+ Sbjct: 301 LSAASSDQGDAREELEIDTYSTSEITIGLNARYLMEAL------YCIKGKCHLSFYDANT 354 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ I+ +D D +A Y++MPMRI Sbjct: 355 AILIQEQDND---------DAMYIIMPMRI 375 >gi|309973508|gb|ADO96709.1| DNA polymerase III beta subunit [Haemophilus influenzae R2846] Length = 366 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366 >gi|58617550|ref|YP_196749.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel] gi|58417162|emb|CAI28275.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel] Length = 375 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 127/390 (32%), Positives = 212/390 (54%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + V + +L+ L + I+E++++I V V ++A D + + ++ +I I +I A+ Sbjct: 7 LNFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISAN 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESEF 118 V V G I VSA LLYDIVRKL + +I F K+ L E + + F L +F Sbjct: 67 VLVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKDGRLTIECS----RTEFSLPIVDIEKF 122 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + E F L S L NL +T FA++ EE R+ LNG++ H + LC ATDG Sbjct: 123 PVIENNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTSNG--ALCCAATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNIESLS 236 HRL++A++ V I IIVP+K V EIL+I+S +SS + +SLS +I + Sbjct: 181 HRLSLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYI 240 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++IDG FP+Y ++IP S+DK + ++ L A+DRVS++ +++ +KL + +KL Sbjct: 241 LISKVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLI 300 Query: 297 MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + D G A E + + Y+ + I N +YL+E + + + +N+ Sbjct: 301 LSAASSDQGDAREELEIDTYSTSEITIGLNARYLMEAL------YCIKGKCHLSFYDANT 354 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ I+ +D D +A Y++MPMRI Sbjct: 355 AILIQEQDND---------DAMYIIMPMRI 375 >gi|300309348|ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1] gi|300072133|gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/385 (30%), Positives = 203/385 (52%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61 + +R +L L I+ER++T+P+ ++L++ + + ++ E++IT A S Sbjct: 4 VKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADVGSG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV+A L DI+R L D ++S N+ + + G S F LQ+ EFP+ Sbjct: 64 SEATATTVAARKLLDILRALPDSGEVSISLSNK---RLTVQSGKSRFALQTLAAEEFPTV 120 Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E Y L LK+L HFAMA ++IRYYLNG+ + E + AVATDGHR Sbjct: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVV--EGKNVIAVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +V+ + +I+PRK + E+ R+L D V++ ++ +++ L + + + Sbjct: 179 LAFCQVETEEDFPRQ-EVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y V+P ++ L +++ R +IM+S + + V+ ++ L ++ Sbjct: 238 LVEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISST 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N D +A+E + + Y +DI FN YLL++++N+ +D V L +NSS I Sbjct: 298 NADQEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLK-----NDYVNIALGDANSSALIT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D N D K YV+MPMRI Sbjct: 353 IPD-----NADFK----YVVMPMRI 368 >gi|42521652|ref|NP_967032.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100] gi|39574182|emb|CAE77686.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100] Length = 368 Score = 191 bits (486), Expect = 1e-46, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 219/391 (56%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +++ D+L L+G I+E++NT+P+ +VLL+A+ L++ A+ E+ +T I Sbjct: 1 MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIKVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE--- 117 V G + VSA L+DI ++L +G KEN + I G + E Sbjct: 61 VHQAGKVAVSAKSLFDIAKELSEGPITLIKKENNW---LEIKQGKYTSKIVGISAEEYPI 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + ++ ++ + VLK ++++T ++++T+E RY+LNG+FF +N + VATD Sbjct: 118 FPTYNSQAFI---KIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQT-GFKMVATD 173 Query: 178 GHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHR+++ DI ++ +I+PRK + EI +IL S D +V++++ S+ L S Sbjct: 174 GHRMSLVNKPSEDI--KVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKHSS 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +RLI+G++PNYQ IP +++ ++ ++ RVS++++ + +AV L+LS+ + Sbjct: 232 TILMIRLIEGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGR 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ +NP++G A E + V Y + I FN KY+ +I+ +++ D++ F L+ Sbjct: 292 MEISSNNPELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQ-----DKIDFELNDHL 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R N V+MPMRI Sbjct: 347 SPGLMR---------PHNDQTYTCVVMPMRI 368 >gi|95929987|ref|ZP_01312727.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM 684] gi|95133956|gb|EAT15615.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM 684] Length = 372 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 116/389 (29%), Positives = 215/389 (55%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MKIT +++D+L+ L ++E+K T+P+ +VLL+ + L + A+ EI I I Sbjct: 1 MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + G IT+SA LY+IV++L D KEN V I +G + F + EF Sbjct: 61 AEIISDGKITISAKKLYEIVKELADAEITLKVKENNW---VEIINGKAKFNIVGLSSEEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176 P +++ + + LKN++++T +A++ +E ++ LNGI+ H D K + V+T Sbjct: 118 PLITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVST 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRL++ +++ +I +I P+K + E+ +I+ ++ +K+S+ ++ +NI+ + Sbjct: 178 DGHRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETT 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDG+FP+Y+ VIP +D ++N L + R+S++++ + + + + +++ Sbjct: 238 LVMRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEIN 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T NP+ G A E++ Y + I FN KYL+++I N VVD ++ + + S Sbjct: 298 VTSSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISN-----VVDKDIRIYIKDNMSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + N V+MPMRI Sbjct: 353 CLILPEDTN---------NYLAVIMPMRI 372 >gi|329118145|ref|ZP_08246857.1| DNA-directed DNA polymerase III beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465805|gb|EGF12078.1| DNA-directed DNA polymerase III beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 367 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 123/385 (31%), Positives = 207/385 (53%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VL++ G I A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLIENTHGQTNILATDLEIQINTAGPDSEA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A L DI+R L +GA ++ + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKLQDILRALPEGALVALDWAQNRL----TLKAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EE +F L LK ++ + ++MA ++IRYYLNG+ L+L VATDGHR Sbjct: 120 SVGEEIGSAFSLPQDTLKTMLAQVQYSMAVQDIRYYLNGLLMQTEGGQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + I A + K +I+PRK V E+ ++L+ D V V L E+++ + + Sbjct: 178 LAYSAAAIEADLPKA-EVILPRKTVLELFKLLNRPDEQVSVELLENQVRFRCNGSVIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG+FP+Y VIP NDK +N A++R +I+++ + + +L L L + Sbjct: 237 VVDGKFPDYNRVIPLDNDKIFLLNRAAFLGALERAAILANEKFRGARLHLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y ++ FN YL++++ NI +D++ ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEAGFNINYLMDVLRNIHADDI---QLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN D K Y++MPMRI Sbjct: 352 -----IPNNPDFK----YIVMPMRI 367 >gi|309751342|gb|ADO81326.1| DNA polymerase III beta subunit [Haemophilus influenzae R2866] Length = 366 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSS---------CEYVIMPMRL 366 >gi|319897496|ref|YP_004135693.1| DNA polymerase iii, beta subunit [Haemophilus influenzae F3031] gi|317433002|emb|CBY81373.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3031] Length = 366 Score = 191 bits (485), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 121/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDESEITVIFEQDRAL---VQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISL-GQELQNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|217968467|ref|YP_002353701.1| DNA polymerase III subunit beta [Thauera sp. MZ1T] gi|217505794|gb|ACK52805.1| DNA polymerase III, beta subunit [Thauera sp. MZ1T] Length = 369 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 124/389 (31%), Positives = 206/389 (52%), Gaps = 29/389 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAIPA 59 +T R +L L I+E+++T+P+ +VL++ + L + A+ EI+I TG Sbjct: 4 LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHADQLTMLATDIEIQIRTTTGGHIG 63 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D SITV A L DI+R L D A+IS +++ + + G S F LQ+ P +++P Sbjct: 64 GED--ASITVGARKLQDILRALPDSAEISLTLDDK---RLTVKAGRSRFQLQTLPAADYP 118 Query: 120 S-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + K + + +AMA ++IRYYLNG+ + +L++ VATDG Sbjct: 119 RLNPPTDAAAHLSIGQRTFKRQLAQVAYAMAQQDIRYYLNGLLLIADGGELRM--VATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A D+ A IA I+PRK V E+ R L+ D +++ L+ ++ + + Sbjct: 177 HRLAYAASDLEAPIATRTEAILPRKTVLELARQLADSDDPLEILLAGNQAVFRFGPIELV 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG+FP+Y+ VIP ++ K + L A+ R +I+++ + + V++ L L + Sbjct: 237 TKLIDGKFPDYERVIPTAHPKLIHFARQPLLSALQRAAILTNEKFRGVRMVLEDGVLRIA 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A++ + + Y +DI FN YLL++++N+SS E VD +R + NSS Sbjct: 297 STNAEQEEAMDELEIDYQGDKLDIGFNVTYLLDVLNNLSS-ETVD----WRFNDGNSSAL 351 Query: 359 IR--GKDKDSKNNKDNKVNAFYVLMPMRI 385 I G DK YV+MPMRI Sbjct: 352 ITLPGNDKFK-----------YVVMPMRI 369 >gi|145638186|ref|ZP_01793796.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII] gi|145272515|gb|EDK12422.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII] Length = 366 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|319775074|ref|YP_004137562.1| DNA polymerase III subunit beta [Haemophilus influenzae F3047] gi|329123015|ref|ZP_08251586.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius ATCC 11116] gi|317449665|emb|CBY85871.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3047] gi|327471946|gb|EGF17386.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius ATCC 11116] Length = 366 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSS---------CEYVIMPMRL 366 >gi|91774358|ref|YP_544114.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT] gi|91708345|gb|ABE48273.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT] Length = 367 Score = 191 bits (484), Expect = 2e-46, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 212/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+ER++T+P+ ++LL+A +++ A+ E++I+ ++ ++ Sbjct: 1 MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 S T+SA L DI R L + A+I+ ++ + + + G S F LQ+ P ++P Sbjct: 61 AGGELSTTISAKKLLDICRSLPENAEITMATQD---SRIQVKTGKSRFNLQTLPAGDYPL 117 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 TK E+ + ++ LK L ++ FAMA ++IRYYLNG+ F +N +L V TDG Sbjct: 118 MTKTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ ++ + K II+PRK V E++++L + V + L+ + + + + Sbjct: 176 HRLSFTSTELASSYEKQ-EIILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP + V+ T + ++ R SI+S+ + + +++ LS++ L + Sbjct: 235 SKVIDGKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y +DI FN Y++++++N S + V F +NSS Sbjct: 295 STNSEQEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDS-----ESVTFSFADANSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ D N YV+MPMRI Sbjct: 350 VTVENDD---------NYKYVVMPMRI 367 >gi|294668098|ref|ZP_06733205.1| DNA polymerase III, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309806|gb|EFE51049.1| DNA polymerase III, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 367 Score = 190 bits (483), Expect = 3e-46, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 209/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ G I A+ EI+I P S Sbjct: 4 LQADRDALLKPLQAVTGIVERRHTLPILSNVLLESTHGQTNILATDLEIQINTDGPKSEA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A L DI+R L +GAQ++ + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKLQDILRALPEGAQVALDWAQNRL----TLKAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EE +F L LK ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 SVGEEVSSAFSLTQEALKGMLSQVQYSMAVQDIRYYLNGLLMQTEGDQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + I A + K +I+PRK V E+ ++L+ + V V L +++ + + Sbjct: 178 LAYSAATIEADLPKA-EVILPRKTVLELFKLLNQPNEQVSVELLNNQVRFRCNGTVIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG+FP++ VIP NDK +N ++L A++R +I+++ + + +L L L + Sbjct: 237 VVDGKFPDFNRVIPLDNDKIFLLNRSHLLGALERAAILANEKFRGARLHLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ N+ ++ D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNINYLMDVLRNVHAE---DMQLAFG-DANRSTLF-- 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 351 --------TIPNNPNFKYIVMPMRI 367 >gi|298369734|ref|ZP_06981051.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282291|gb|EFI23779.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 212/385 (55%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++++G I A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESSNGQTNILATDLEIQINTAGPESQT 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A DI+R L + A +S + +N L + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPESAIVSLDWADNRL----TLKAGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +F L KN++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 SVGHDVSTAFSLTQETFKNMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A++ K +I+PRK V E+ ++L++ + V L ++++ ++ + Sbjct: 178 LAYATSQIEAELPKT-EVILPRKTVLELFKLLNNPSEQITVELLDNQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK V+ T+ A++R +I+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTDFLGALERAAILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ N+ +D D ++ F D++ S++F Sbjct: 297 NNEQEEAREELEIAYQGSELEVGFNIGYLMDVLRNVHAD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----IPNNPNFK----YIVMPMRI 367 >gi|300702376|ref|YP_003743976.1| DNA polymerase III subunit beta [Ralstonia solanacearum CFBP2957] gi|299070037|emb|CBJ41322.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CFBP2957] Length = 371 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 122/393 (31%), Positives = 210/393 (53%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT D Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59 Query: 63 VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG+ TV+A L DI+R + DG ++S ++ +++ G S F LQ+ Sbjct: 60 -CGAGNGDIATTVAARKLVDILRAMPDG-EVSLTLNDK---RMSVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVA Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ T L+QA+ R +I+++ + + V+ L + Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I D D+ YV+MPMRI Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371 >gi|294338442|emb|CAZ86768.1| DNA polymerase III, beta subunit [Thiomonas sp. 3As] Length = 371 Score = 190 bits (482), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 126/392 (32%), Positives = 216/392 (55%), Gaps = 31/392 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEI----TGA 56 ++T R ++L+LLG I+ER+ T+P+ +VL+Q N +G L I S E++I GA Sbjct: 3 RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFI-TSDMEVQIRLQAGGA 61 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + S + +ITV+ L DI+R G + + ++ + S F LQ+ P Sbjct: 62 VQTSAE-DAAITVNMRKLLDILRAASPGNVTLEWSDGKM----TVRAAKSRFSLQTLPAE 116 Query: 117 EFPSTKEEEYV--YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP + ++ L +LK L+ THFAMA +IRYYLNG+ + + + + L V Sbjct: 117 DFPLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--V 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIE 233 ATDGHR+ +A + + + II+PRK V E+ R+LS +D + + ++L+ ++ L ++ Sbjct: 175 ATDGHRMTLATAPLEKAVERR-EIILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLD 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 L + +LI+G+FP+YQ V+P + L+V T L+ A+ RV+I+++ + + V+++L Sbjct: 234 GLEFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPG 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L +T N + +A E ++V Y ++I FN YL++ + N++S D++ L Sbjct: 294 LLRLTSINAEQEEAQEEIDVDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDG 348 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS D+ N YV+MPMRI Sbjct: 349 NSSALFTMPDEP---------NFKYVVMPMRI 371 >gi|294648701|ref|ZP_06726161.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC 19194] gi|292825376|gb|EFF84119.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC 19194] Length = 382 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 116/402 (28%), Positives = 209/402 (51%), Gaps = 37/402 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + ++ +L H +ER++T+ + +V +Q L I S E+E+ + + Sbjct: 1 MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACLEPGETTVPARKLVEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I++ L+ V Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TDGHRLA+ EV + + A P IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEV-LASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINT 234 Query: 235 LS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ ++ Sbjct: 235 PSRDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKL 294 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + V L+ + D L + +NP+ +A+E + + Y + P+++ FN +Y+L+++ + Sbjct: 295 RGVFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG----- 349 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+V + +N SV ++ + YV+MPMR+ Sbjct: 350 DDVRMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|16272930|ref|NP_439155.1| DNA polymerase III subunit beta [Haemophilus influenzae Rd KW20] gi|260580083|ref|ZP_05847913.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW] gi|1169393|sp|P43744|DPO3B_HAEIN RecName: Full=DNA polymerase III subunit beta gi|1574022|gb|AAC22654.1| DNA polymerase III, beta subunit (dnaN) [Haemophilus influenzae Rd KW20] gi|260093367|gb|EEW77300.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW] Length = 366 Score = 189 bits (481), Expect = 4e-46, Method: Compositional matrix adjust. Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|239998134|ref|ZP_04718058.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02] gi|240013315|ref|ZP_04720228.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI18] gi|240015760|ref|ZP_04722300.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA6140] gi|240079897|ref|ZP_04724440.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19] gi|240112105|ref|ZP_04726595.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11] gi|240114851|ref|ZP_04728913.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18] gi|240117053|ref|ZP_04731115.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1] gi|240120387|ref|ZP_04733349.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID24-1] gi|240122691|ref|ZP_04735647.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332] gi|240124879|ref|ZP_04737765.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240127392|ref|ZP_04740053.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|254492914|ref|ZP_05106085.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291] gi|260441334|ref|ZP_05795150.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2] gi|268593986|ref|ZP_06128153.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02] gi|268596040|ref|ZP_06130207.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19] gi|268598164|ref|ZP_06132331.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11] gi|268600508|ref|ZP_06134675.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18] gi|268602741|ref|ZP_06136908.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1] gi|268681290|ref|ZP_06148152.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332] gi|268683461|ref|ZP_06150323.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679] gi|268685767|ref|ZP_06152629.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|291044692|ref|ZP_06570401.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2] gi|293397794|ref|ZP_06642000.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62] gi|226511954|gb|EEH61299.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291] gi|268547375|gb|EEZ42793.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02] gi|268549828|gb|EEZ44847.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19] gi|268582295|gb|EEZ46971.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11] gi|268584639|gb|EEZ49315.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18] gi|268586872|gb|EEZ51548.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1] gi|268621574|gb|EEZ53974.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332] gi|268623745|gb|EEZ56145.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679] gi|268626051|gb|EEZ58451.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|291011586|gb|EFE03582.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2] gi|291611740|gb|EFF40809.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62] gi|317165577|gb|ADV09118.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 367 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 209/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 IT +A DI+R L GA +S + +N L + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPAADFPMM 119 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 NVGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ + Sbjct: 178 LAYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367 >gi|73539708|ref|YP_294228.1| DNA polymerase III subunit beta [Ralstonia eutropha JMP134] gi|72117121|gb|AAZ59384.1| DNA polymerase III, beta subunit [Ralstonia eutropha JMP134] Length = 371 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59 Query: 63 VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG + TV+A L DI+R + DG + + + G S F LQ+ Sbjct: 60 -CGVGNDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E E+ S L K+L+ HFAMA ++IRYYLNG+ ++ + K+ AVA Sbjct: 115 EFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVA 172 Query: 176 TDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V++ + +I+PRK + E+ R+L D V+V L+ +++ + Sbjct: 173 TDGHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFSF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ S ++V L Sbjct: 293 HMLKISSTNADQEEAQEELEIDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I + D N YV+MPMRI Sbjct: 348 SNSSALITVPEDD---------NFKYVVMPMRI 371 >gi|121634190|ref|YP_974435.1| DNA polymerase III subunit beta [Neisseria meningitidis FAM18] gi|218767524|ref|YP_002342036.1| DNA polymerase III subunit beta [Neisseria meningitidis Z2491] gi|304388448|ref|ZP_07370554.1| DNA-directed DNA polymerase III beta subunit [Neisseria meningitidis ATCC 13091] gi|120865896|emb|CAM09632.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis FAM18] gi|121051532|emb|CAM07829.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis Z2491] gi|254671989|emb|CBA04456.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha275] gi|304337565|gb|EFM03728.1| DNA-directed DNA polymerase III beta subunit [Neisseria meningitidis ATCC 13091] gi|319409788|emb|CBY90096.1| DNA polymerase III beta subunit [Neisseria meningitidis WUE 2594] gi|325131540|gb|EGC54247.1| DNA polymerase III, beta subunit [Neisseria meningitidis M6190] gi|325135493|gb|EGC58111.1| DNA polymerase III, beta subunit [Neisseria meningitidis M0579] gi|325139205|gb|EGC61751.1| DNA polymerase III, beta subunit [Neisseria meningitidis ES14902] gi|325141558|gb|EGC64025.1| DNA polymerase III, beta subunit [Neisseria meningitidis 961-5945] gi|325197602|gb|ADY93058.1| DNA polymerase III, beta subunit [Neisseria meningitidis G2136] gi|325201463|gb|ADY96917.1| DNA polymerase III, beta subunit [Neisseria meningitidis M01-240149] gi|325207444|gb|ADZ02896.1| DNA polymerase III, beta subunit [Neisseria meningitidis NZ-05/33] Length = 367 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 210/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L S L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|289207189|ref|YP_003459255.1| DNA polymerase III subunit beta [Thioalkalivibrio sp. K90mix] gi|288942820|gb|ADC70519.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. K90mix] Length = 367 Score = 189 bits (481), Expect = 5e-46, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 207/393 (52%), Gaps = 34/393 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GL------LEIKASGPEIE 52 M+++ +R + + L E++ T+P+ +V L+ ++ G+ LE+ G E Sbjct: 1 MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQG---E 57 Query: 53 ITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 G IP DV TVS L D+V+ + ++I + E +++ S F L + Sbjct: 58 AAGTIPGECDV----TVSVRKLLDVVKAAPEDSEIRATIDGE---RMSVGFAGSRFSLAT 110 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P ++FP + + ++ ++ + L+ L+E T F+MA +++RYYL G+ + L+ Sbjct: 111 LPGADFPDWESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLR-- 168 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATDGHRLA+AE ++ I IVPRK + E+ R LS D V+V SE ++ ++ Sbjct: 169 AVATDGHRLALAEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDL 228 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + ++I+G FP+Y+ VIP L V L+QA+ RVSI++S + + V+++L Sbjct: 229 GNAVLRSKVIEGRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGD 288 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N D +A ES+ Y PM+I FN YL+++++ I + D+V L Sbjct: 289 EGCQVMTHNADREEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIET-----DQVRIGLRD 343 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS+ ++ + A YV+MPMR+ Sbjct: 344 GNSSILVQAEPPG---------GARYVVMPMRL 367 >gi|148828163|ref|YP_001292916.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG] gi|148719405|gb|ABR00533.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG] Length = 366 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|83749734|ref|ZP_00946711.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551] gi|207727477|ref|YP_002255871.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum MolK2] gi|207741916|ref|YP_002258308.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum IPO1609] gi|83723586|gb|EAP70787.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551] gi|206590714|emb|CAQ56326.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum MolK2] gi|206593302|emb|CAQ60229.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum IPO1609] Length = 371 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 121/393 (30%), Positives = 206/393 (52%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT D Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59 Query: 63 VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG+ TV+A L DI+R + DG + + ++ G S F LQ+ Sbjct: 60 -CGAGNGDIATTVAARKLVDILRAMPDGEVTLTLNDKRM----SVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVA Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ T L+QA+ R +I+++ + + V+ L + Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I D D+ YV+MPMRI Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371 >gi|226952831|ref|ZP_03823295.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244] gi|226836452|gb|EEH68835.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244] Length = 382 Score = 189 bits (480), Expect = 6e-46, Method: Compositional matrix adjust. Identities = 115/402 (28%), Positives = 209/402 (51%), Gaps = 37/402 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + ++ +L H +ER++T+ + +V +Q L I S E+E+ + + Sbjct: 1 MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A + E++ + G+S F L + P Sbjct: 61 EGACLEPGETTVPARKLVEICKSLPTAALVDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P T E ++ LK L E+T FAMA +++R+YL G I++ L+ V Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TDGHRLA+ EV + + A P IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEV-LASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINT 234 Query: 235 LS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ ++ Sbjct: 235 PSRDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKL 294 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + V L+ + D L + +NP+ +A+E + + Y + P+++ FN +Y+L+++ + Sbjct: 295 RGVFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG----- 349 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+V + +N SV ++ + YV+MPMR+ Sbjct: 350 DDVRMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|229846050|ref|ZP_04466162.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1] gi|229811054|gb|EEP46771.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1] Length = 366 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|145634168|ref|ZP_01789879.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA] gi|145268612|gb|EDK08605.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA] Length = 366 Score = 189 bits (480), Expect = 7e-46, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSFKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|152980594|ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille] gi|151280671|gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille] Length = 368 Score = 189 bits (479), Expect = 8e-46, Method: Compositional matrix adjust. Identities = 116/385 (30%), Positives = 203/385 (52%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61 + +R +L L I+ER++T+P+ ++L++ + + ++ E++IT A S Sbjct: 4 VKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + S TV+A L DI+R L D +S N+ + + G S F LQ+ EFP+ Sbjct: 64 NDVASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTV 120 Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+Y L LK+L HF+MA ++IRYYLNG+ ++ +++ AVATDGHR Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNV--IAVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +V + + +I+PRK + E+ R+L D V + ++ +++ L + + + Sbjct: 179 LAFCQVATEQEFPRQ-EVIIPRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIELISK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y V+P + L +++ R +IM+S + + V+ +S + ++ Sbjct: 238 LVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISST 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N D +A+E + + Y +DI FN YLL++++N+ D + L +NSS I Sbjct: 298 NADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DSINIALGDANSSALIT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D N D K YV+MPMRI Sbjct: 353 VPD-----NPDFK----YVVMPMRI 368 >gi|261378192|ref|ZP_05982765.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685] gi|269145661|gb|EEZ72079.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685] Length = 367 Score = 188 bits (478), Expect = 9e-46, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ DG + A+ EI+I + P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRDGQTRLLATDLEIQIDTSGPECSA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S +N + + G S F LQ+ P +FP Sbjct: 64 ADFRITTNAKKFQDILRALPAGALVSLDWDN---NRLTLKAGKSRFALQTLPAEDFPQMN 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V + FEL K+++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 IGEDVSAVFELEQEAFKSMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + + +I+PRK V E+ ++L++ ++V L + ++ ++ ++ Sbjct: 179 AYSACAIDADLPRT-EVILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++R SI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRVELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD+V ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGSGLEVGFNIGYLMDVLRNIHSDDV---QLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|262374720|ref|ZP_06067992.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205] gi|262310376|gb|EEY91468.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205] Length = 382 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/401 (28%), Positives = 206/401 (51%), Gaps = 35/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q L I S E+E+ + + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLA 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 DGACIEAGETTVPARKLVEICKSLPSAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFPSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E + + ++ LK L E+T FAMA +++R+YL G I++ L+ V Sbjct: 118 DYPLLSTENSLGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVT 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ EV + IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 176 TDGHRLALCEVLASSTATSSIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235 Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLR 295 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V L+ S D L + +NP+ +A E + + Y + P+++ FN +Y+L+++ + D Sbjct: 296 GVFLNFSQDTLQLRANNPEQDEASEDLVIQYQDAPLEMSFNAQYILDVLSVLDG-----D 350 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + +N SV ++ + YV+MPMR+ Sbjct: 351 DVRMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382 >gi|152977690|ref|YP_001343319.1| DNA polymerase III subunit beta [Actinobacillus succinogenes 130Z] gi|150839413|gb|ABR73384.1| DNA polymerase III, beta subunit [Actinobacillus succinogenes 130Z] Length = 366 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 115/386 (29%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R ++L+ L C ++ + +PV +VLLQ L I + E+E++ + Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNVPVLNNVLLQIEGDRLTITGTDLEVELSTQAQLN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ T+ A DI R L + A I+ E + + + F L +FP E+P+ Sbjct: 61 SHGEGTFTIPAKKFLDICRSLPEDAVITVDFEQDRAI---VRSSRTKFNLATFPAEEYPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F ++ + ++ L+E T F+MA + RY+LNG+ F L+ VATDGHR Sbjct: 118 LTDWQSEVDFTVSQATMRRLIEATQFSMANNDARYFLNGMKFETEGNLLR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV +++ Q + S+I+PRK V E+ R+L ++ + +V + + + + S+ + Sbjct: 176 LAVCTIEL-EQDLQNHSVILPRKGVLELARLLDATSEQPARVQIGTNNFRVELGSVVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + ++ L + NL+Q+ R SI+SS +++ V+L L+ ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNANRILESDWENLKQSFVRASILSSEKVRTVRLELNQNQLTITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ + E ++V Y P++I FN Y+L++++ + V R ++SS I Sbjct: 295 KNPEQEEVEEILDVSYQSEPIEIGFNVSYVLDVLNALKC-----QRVRVRFTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D ++N A YV+MPM++ Sbjct: 350 ----EDCEDN-----TAEYVIMPMKL 366 >gi|325127477|gb|EGC50406.1| DNA polymerase III, beta subunit [Neisseria meningitidis N1568] Length = 367 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|308389996|gb|ADO32316.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis alpha710] Length = 367 Score = 188 bits (478), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALLAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L S L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|260581929|ref|ZP_05849725.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127] gi|260095122|gb|EEW79014.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127] Length = 366 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|161869313|ref|YP_001598480.1| DNA polymerase III subunit beta [Neisseria meningitidis 053442] gi|161594866|gb|ABX72526.1| DNA polymerase III, beta subunit [Neisseria meningitidis 053442] Length = 367 Score = 188 bits (477), Expect = 1e-45, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|258593679|emb|CBE70020.1| DNA polymerase III, beta-subunit [NC10 bacterium 'Dutch sediment'] Length = 368 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R D+L +G ++E K ++P+ H+LL+ + L + + +I + +P Sbjct: 1 MHIKVLRDDLLNGVGPIQAVVETKRSLPILSHLLLETSPSYLSVFGTDLDIGVRKRVPGQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI +SA LY+IVR+L + + EL I+ G+S F ++ +FPS Sbjct: 61 VVKEGSIALSARKLYEIVRELP-ATSVDLSVDGEL--TATITCGNSEFRVKGLSRDDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + + + ++++ RT FA+++++ RY LNGI F + +D+K+ VATDGHR Sbjct: 118 MREPKQ-SGIVIDRRLFRDMIRRTLFAVSSDQTRYTLNGILFRVTPKDVKM--VATDGHR 174 Query: 181 LAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 LA+ ++ + Q+ I+PRKA E L++L + + + +S++ + L + + Sbjct: 175 LAMTNHELSSDSCQLTAAIDAIIPRKAAAETLKLLREEPGQITIEISDNHLLLQTDDTLI 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+G+FPNY+ VIP + KE+ VN + R S + R + + +L + Sbjct: 235 DARLIEGQFPNYEQVIPANATKEVTVNREAFLAGLRRTSTILGERALPTTMKFTPGRLLL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N D+G+A E +++ Y M + FN +Y+L+ + +++ ++ RL S Sbjct: 295 SCVNLDLGEARERLDIEYQHDEMSVGFNARYILDFLGALTT-----EQATIRLQDPLSPA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 GKD D + V+MPMR+ Sbjct: 350 LFSGKD-------DKQYTC--VIMPMRL 368 >gi|294788719|ref|ZP_06753960.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453] gi|294483201|gb|EFG30887.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453] Length = 367 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 214/387 (55%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPAS 60 + +R +L+ L I+ERK+T+P+ +VLL++ DG + I A+ EI+I GA Sbjct: 4 LQTDRDSLLKPLQAVTGIVERKHTLPILSNVLLESKDGRIHILATDLEIQIHTQGAENDK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 D +T +A L DI+R L DGA + + +N L + G S F LQ+ P +FP Sbjct: 64 GDF--RLTTNAKKLQDILRALPDGAIVQLDWADNRL----TLKAGKSRFNLQTLPAEDFP 117 Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + F L K+++ + ++MA ++IRYYLNG+ + E L+L V+TDG Sbjct: 118 TMSVNDSAQVRFSLTQETFKHMISQVQYSMAVQDIRYYLNGLLLQVEENQLRL--VSTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + +I A ++K +I+PRK V E+ ++L+ + +++ L ++I L + Sbjct: 176 HRLAYSVCEIEANLSKT-EVILPRKTVLELNKLLNQPNELIEIELLGNQIRLTCNDTVIV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP NDK ++ T+L A++R +I+++ + + VKL LS+ L ++ Sbjct: 235 SKVIDGKFPDYNRVIPLDNDKIFLISRTDLLGALERSAILANEKFKGVKLFLSAGLLRVS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y +++ FN YL +++ N D++ ++ + SS+F Sbjct: 295 CTNNEQEEAQEELEIAYQGESLEVSFNINYLTDVLRNTHCDDI---QIALG-NEHKSSLF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D K YV+MPMRI Sbjct: 351 TKPDEADFK----------YVVMPMRI 367 >gi|145628066|ref|ZP_01783867.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21] gi|144979841|gb|EDJ89500.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21] Length = 366 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQDRAL---VQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETSDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + ++V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N +D+ YV+MPMR+ Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366 >gi|296314156|ref|ZP_06864097.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296839191|gb|EFH23129.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLMLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|300689716|ref|YP_003750711.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07] gi|299076776|emb|CBJ49383.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07] Length = 371 Score = 187 bits (476), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT D Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59 Query: 63 VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG+ TV+A L DI+R + DG + + ++ G S F LQ+ Sbjct: 60 -CGAGNGDIATTVAARKLVDILRAMPDGEVALTLNDKRM----SVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVA Sbjct: 115 EFPTVAEASDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I D D+ YV+MPMRI Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371 >gi|332286196|ref|YP_004418107.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7] gi|330430149|gb|AEC21483.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7] Length = 369 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 119/385 (30%), Positives = 208/385 (54%), Gaps = 21/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 + R +L+ L I+ER+NT+P+ ++LL+ + A+ E++IT V Sbjct: 4 VQATRDALLKPLSTVAGIVERRNTLPILANILLRKEGKSVAFIATDLEVQITTHAEFGVG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS- 120 D S TV+A L DI+R L D I K +++++ G S F LQ+ +EFP+ Sbjct: 64 DDNESTTVAARKLLDILRALPDSGDI---KLGLASSKLSVQSGKSRFALQTLGATEFPTL 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E++ SF L LK+L HFAMA ++IRYYLNG+ F ++ AVATDGHR Sbjct: 121 AQPEKWDVSFALPQKTLKHLFNMVHFAMAQQDIRYYLNGLLFVFEPGFVR--AVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +V I +IVPRK V E+ R+L D V + ++ +I + + + Sbjct: 179 LAHSGT-VVEGIESKHDVIVPRKTVLEMQRLLGDTDEPVSIDVATGQIRFRFGDVELVSK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP++ VIP + + VN L+ ++ R +I+++ +++ V++ LS ++L ++ Sbjct: 238 LVEGKFPDFTRVIPSNYTRHFSVNREILQGSLQRAAILTTDKLKGVRVQLSDNQLKISSS 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E +++ Y +D+ FN YLL+++ N+ ++ + + + D + S++ Sbjct: 298 NAEQEEAQEEIDIDYGHEALDVGFNVSYLLDVLANVKTETI---QWSVQPDVNASALITS 354 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +D K YV+MPMRI Sbjct: 355 PEDDQFK----------YVVMPMRI 369 >gi|296134506|ref|YP_003641748.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12] gi|295794628|gb|ADG29418.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12] Length = 371 Score = 187 bits (475), Expect = 2e-45, Method: Compositional matrix adjust. Identities = 123/391 (31%), Positives = 213/391 (54%), Gaps = 29/391 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPAS 60 ++T R ++L+LLG I+ER+ T+P+ +VL+Q N +G L I S E++I + Sbjct: 3 RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFI-TSDMEVQIRLQAGEA 61 Query: 61 VDVCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 V +ITV+ L DI+R G + + ++ + S F LQ+ P + Sbjct: 62 VQTSAEDAAITVNMRKLLDILRAASPGNVTLEWSDGKM----TVRAAKSRFSLQTLPAED 117 Query: 118 FPSTKEEEYV--YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 FP + ++ L +LK L+ THFAMA +IRYYLNG+ + + + + L VA Sbjct: 118 FPLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--VA 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234 TDGHR+ +A + + + II+PRK V E+ R+LS +D + + ++L+ ++ L ++ Sbjct: 176 TDGHRMTLASAPLEKAVERR-EIILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDG 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 L + +LI+G+FP+YQ V+P + L+V T L+ A+ RV+I+++ + + V+++L Sbjct: 235 LEFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGL 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T N + +A E +++ Y ++I FN YL++ + N++S D++ L N Sbjct: 295 LRLTSINAEQEEAQEEIDIDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDGN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS D+ N YV+MPMRI Sbjct: 350 SSALFTMPDEP---------NFKYVVMPMRI 371 >gi|291612474|ref|YP_003522631.1| DNA polymerase III, subunit beta [Sideroxydans lithotrophicus ES-1] gi|291582586|gb|ADE10244.1| DNA polymerase III, beta subunit [Sideroxydans lithotrophicus ES-1] Length = 367 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/384 (31%), Positives = 212/384 (55%), Gaps = 25/384 (6%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 ++R+++L+ L I+ERK +P+ +VL++ + + EI+I + A+ D Sbjct: 6 IDRNELLKPLQAVVGIVERKQPLPILSNVLIKKTKDSVRFITTDLEIQIEAQLRATFDAT 65 Query: 65 -GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 SIT+SA L +I+R + D + ++ ++N+L + N S F LQ+ P +FP Sbjct: 66 ESSITISAKKLQEILRAIPDNSMVTLDNQDNKLLVKAN----KSRFSLQTLPAQDFPILS 121 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ S E+ VL+ L+ +AMA ++IRYYLNG+ I+E +KL +ATDGHRL Sbjct: 122 EQLIGASKIEIEQGVLRRLLSSVQYAMAQQDIRYYLNGVLLVIDETTIKL--IATDGHRL 179 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A ++ + K +I+ RK V E+L++L+ + V++ L+E ++ ++ + ++ ++ Sbjct: 180 AFISEELKEKHQKQ-EVILSRKTVNELLKLLADSEDKVQLELAEKQVRISFADVILTSKV 238 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP+Y VIP + L ++ + QA+ R +I+S+ + + V+L L+ L + N Sbjct: 239 IDGKFPDYNRVIPAHTN-HLTLDRLTILQALQRAAILSNEKFRGVRLLLTEKNLRVISSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + Y+ P+DI FN YLL+ I+NI++ V NSS+ I Sbjct: 298 SEQEEAQEDIENDYSGAPLDIGFNVNYLLDGINNINT-----QTVTLSFGDQNSSLLITI 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 +K D K YV+MPMRI Sbjct: 353 PEKS-----DYK----YVVMPMRI 367 >gi|254804281|ref|YP_003082502.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14] gi|254667823|emb|CBA03814.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14] gi|254670915|emb|CBA07499.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha153] gi|325204853|gb|ADZ00307.1| DNA polymerase III, beta subunit [Neisseria meningitidis M01-240355] Length = 367 Score = 187 bits (475), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPHA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|17548158|ref|NP_521560.1| DNA polymerase III subunit beta [Ralstonia solanacearum GMI1000] gi|17430465|emb|CAD16938.1| probable dna polymerase III (beta chain) protein [Ralstonia solanacearum GMI1000] Length = 371 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT D Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59 Query: 63 VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG+ TV+A L DI+R + DG + + ++ G S F LQ+ Sbjct: 60 -CGAGNGDIATTVAARKLVDILRAMPDGEVALTLNDKRM----SVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVA Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I D D+ YV+MPMRI Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371 >gi|34495457|ref|NP_899672.1| DNA polymerase III subunit beta [Chromobacterium violaceum ATCC 12472] gi|34101313|gb|AAQ57682.1| DNA-directed DNA polymerase, beta subunit [Chromobacterium violaceum ATCC 12472] Length = 369 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 122/391 (31%), Positives = 211/391 (53%), Gaps = 33/391 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G + A+ EI+IT A +S + Sbjct: 4 LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKGGQVGFLATDLEIQITTA--SSDE 61 Query: 63 VCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G +T SA L DI+R + A ++ E G + + G S F LQ+ P +FP Sbjct: 62 LPGEDFRLTTSAKKLQDILRAIPGNATVTL--EQLDGGRLVLKAGKSRFNLQTLPAEDFP 119 Query: 120 -----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 S E SF L+ LK L+ + +AMA ++IRYYLNG+ + ++L V Sbjct: 120 LLSVGSAGES----SFTLSQRELKRLISQVQYAMAVQDIRYYLNGLLMQTDGNQVRL--V 173 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRLA A D+ A + K +I+PRK + E+ ++L D +K+ + +++ + + Sbjct: 174 ATDGHRLAFASADVAATLPK-AEVILPRKTIIELYKLLQDSDDEIKIEVLANQVRFSFGA 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +++DG+FP+Y VIP NDK + A+ R +I+++ + + V+L L+ K Sbjct: 233 TVIISKVVDGKFPDYNRVIPLDNDKIFLIERLEFLHALQRAAILANEKFRGVRLVLAPGK 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N + +A E + + + ++I FN YLL+++ N+ +D + ++ F DSS Sbjct: 293 MSILCTNSEQEEAEEELEIAFQGGTLEIGFNINYLLDVLTNLPADTL---QLAFG-DSSR 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S++F D N K Y++MPMRI Sbjct: 349 SALF---TIPDVSNFK-------YIVMPMRI 369 >gi|59800475|ref|YP_207187.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA 1090] gi|59717370|gb|AAW88775.1| putative DNA polymerase III, beta subunit [Neisseria gonorrhoeae FA 1090] Length = 367 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 120/385 (31%), Positives = 208/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER +T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAFTGIVERLHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 IT +A DI+R L GA +S + +N L + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPAADFPMM 119 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 NVGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ + Sbjct: 178 LAYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 297 NNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367 >gi|84394124|ref|ZP_00992858.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01] gi|84375270|gb|EAP92183.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01] Length = 304 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 101/322 (31%), Positives = 180/322 (55%), Gaps = 20/322 (6%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 GSITV + DI R L D + I+ + G V + G S F L + P ++FP+ ++ Sbjct: 3 AGSITVPSRKFLDICRGLPDSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIED 59 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + + L+ L+E+T F+MA +++RYYLNG+ F I E L +VATDGHR+AV Sbjct: 60 WSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSILRSVATDGHRMAV 117 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 ++ + A A+ IIVPRK V E++++L + + V + + S + + + + +L+D Sbjct: 118 SQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVD 176 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L ++ +T +NP+ Sbjct: 177 GRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDTEMRITANNPE 236 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S I Sbjct: 237 QEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENAQ 291 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 292 DDS---------AMYVVMPIRL 304 >gi|237749315|ref|ZP_04579795.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13] gi|229380677|gb|EEO30768.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13] Length = 368 Score = 187 bits (474), Expect = 3e-45, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 209/381 (54%), Gaps = 22/381 (5%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASVDVCG 65 R ++L L I+ER++T+P+ ++L++ + ++ EI+I T A + + Sbjct: 8 RDNLLRPLQIVSGIVERRHTLPILANILIRKEGEAVSFLSTDTEIQIVTHAEIGTNEENT 67 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP-STKEE 124 + TV+A L DI+R L D + I+ + ++ + + G S F LQ+ P +FP ++ Sbjct: 68 TTTVAARKLLDILRALPDTSDIAISQNDK---RLVVQAGKSRFSLQTLPADDFPIVSQPA 124 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 EY S ++ LKNL+ +F+MA ++IRYYLNG+ ++ K+ AVATDGHRLA Sbjct: 125 EYETSVTVSQKALKNLLGMVYFSMAQQDIRYYLNGLLLQVDGN--KMTAVATDGHRLAFC 182 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 +++ + +K +I+PRK + E+ R+L D V++ S ++ + + +L++G Sbjct: 183 QMETDQEFSK-NDVIIPRKTILELQRLLEDSDEPVRIDFSGGQVRFVFGDVELISKLVEG 241 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +FP+Y VIP + ++ L++A+ R +IM+S + + ++ L+ L ++ N D Sbjct: 242 KFPDYTRVIPKGYKNKFTLSREQLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 +AIE + + Y +DI FN YLL+++ N+ +++V L +NSS + D Sbjct: 302 EEAIEEIELDYGGDSIDIGFNVTYLLDVLGNLK-----NEQVSVELGDANSSALVSVPD- 355 Query: 365 DSKNNKDNKVNAFYVLMPMRI 385 N D K YV+MPMRI Sbjct: 356 ----NSDFK----YVVMPMRI 368 >gi|15677733|ref|NP_274896.1| DNA polymerase III subunit beta [Neisseria meningitidis MC58] gi|7227158|gb|AAF42232.1| DNA polymerase III, beta subunit [Neisseria meningitidis MC58] gi|316985518|gb|EFV64465.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76] gi|325133541|gb|EGC56204.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13399] gi|325143791|gb|EGC66108.1| DNA polymerase III, beta subunit [Neisseria meningitidis M01-240013] gi|325200954|gb|ADY96409.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76] gi|325206809|gb|ADZ02262.1| DNA polymerase III, beta subunit [Neisseria meningitidis M04-240196] Length = 367 Score = 187 bits (474), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 117/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++R SI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|261393233|emb|CAX50856.1| DNA polymerase III beta subunit [Neisseria meningitidis 8013] Length = 367 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPHA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|299065056|emb|CBJ36217.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CMR15] Length = 371 Score = 186 bits (473), Expect = 4e-45, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT D Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59 Query: 63 VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG+ TV+A L DI+R + DG + + ++ G S F LQ+ Sbjct: 60 -CGAGNGDIATTVAARKLVDILRAMPDGEVALTLNDKRM----SVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVA Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDIDDPVSVQLASNQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNGFTIDRAFLQQALQRTAILTTDKFKGVRCMLDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I D D+ YV+MPMRI Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371 >gi|81251093|gb|ABB69891.1| DNA polymerase III beta chain [Nitrosovibrio sp. RY3C] Length = 370 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 124/388 (31%), Positives = 208/388 (53%), Gaps = 26/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I + +L+ L I+ER++T+P+ +VL++ + A+ EI+I P S D Sbjct: 4 IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63 Query: 63 ---VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 +ITV+A L DI+R L D Q++ +EN L + G S F LQ+ P +F Sbjct: 64 ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQENRL----QVKAGKSRFNLQTLPAEDF 119 Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P E + L LKNL+ +AMA ++IRYYLNG+ + + LK+ VATD Sbjct: 120 PRLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRL A + +++Q + +I+PRKAV E+ + L + V V L ++++ ++ + Sbjct: 178 GHRLGFASI-VMSQPQEKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG+FP+Y VIP K+ +N Q + R SI+S+ + + V+L L++ L + Sbjct: 237 VSKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N + +A E + + Y+ +DI FN YLL++++N++ + V + F +S++ + Sbjct: 297 VCSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTCETV---QCSFGDANSSALI 353 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G D D K YV+MPMRI Sbjct: 354 TIPGND-DFK----------YVVMPMRI 370 >gi|325139556|gb|EGC62096.1| DNA polymerase III, beta subunit [Neisseria meningitidis CU385] Length = 367 Score = 186 bits (472), Expect = 5e-45, Method: Compositional matrix adjust. Identities = 118/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I P S Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTTGPESGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y ++ FN YL++++ NI SD D ++ F D++ S++F Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367 >gi|325129494|gb|EGC52323.1| DNA polymerase III, beta subunit [Neisseria meningitidis OX99.30304] Length = 361 Score = 186 bits (472), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 117/381 (30%), Positives = 208/381 (54%), Gaps = 21/381 (5%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 R +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 1 RRDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGAGDF 60 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EE 124 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP E Sbjct: 61 RITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMNVGE 117 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRLA A Sbjct: 118 DISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRLAYA 175 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++IDG Sbjct: 176 ACAIDADLPHA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDG 234 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +FP++ VIP NDK ++ L A++RVSI+++ + + +L L S L + N + Sbjct: 235 KFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNNEQ 294 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 +A E + + Y +++ FN YL++++ NI SD++ ++ F D++ S++F Sbjct: 295 EEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSDDM---QLAFG-DANRSTLFT----- 345 Query: 365 DSKNNKDNKVNAFYVLMPMRI 385 NN + K Y++MPMRI Sbjct: 346 -VPNNPNFK----YIVMPMRI 361 >gi|81251089|gb|ABB69888.1| DNA polymerase III beta chain [Nitrosovibrio sp. FJI82] Length = 370 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 124/388 (31%), Positives = 208/388 (53%), Gaps = 26/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I + +L+ L I+ER++T+P+ +VL++ + A+ EI+I P S D Sbjct: 4 IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63 Query: 63 ---VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 +ITV+A L DI+R L D Q++ +EN L + G S F LQ+ P +F Sbjct: 64 ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQENRL----QVKAGKSRFNLQTLPAEDF 119 Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P E + L LKNL+ +AMA ++IRYYLNG+ + + LK+ VATD Sbjct: 120 PRLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRL A + +++Q + +I+PRKAV E+ + L + V V L ++++ ++ + Sbjct: 178 GHRLGFASI-VMSQPREKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG+FP+Y VIP K+ +N Q + R SI+S+ + + V+L L++ L + Sbjct: 237 VSKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N + +A E + + Y+ +DI FN YLL++++N++ + V + F +S++ + Sbjct: 297 VCSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTCETV---QCSFGDANSSALI 353 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G D D K YV+MPMRI Sbjct: 354 TIPGND-DFK----------YVVMPMRI 370 >gi|29653366|ref|NP_819058.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493] gi|153209960|ref|ZP_01947547.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165924212|ref|ZP_02220044.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334] gi|212211671|ref|YP_002302607.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212] gi|212217690|ref|YP_002304477.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154] gi|29540628|gb|AAO89572.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493] gi|120575206|gb|EAX31830.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165916346|gb|EDR34950.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334] gi|212010081|gb|ACJ17462.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212] gi|212011952|gb|ACJ19332.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154] Length = 369 Score = 186 bits (471), Expect = 6e-45, Method: Compositional matrix adjust. Identities = 118/387 (30%), Positives = 203/387 (52%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R +L+ L ++ERK T+P+ +VLL L I + E+E+ G Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + S +T+ L DI R L D A I +++ E ++ + G S F L + P +F Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E L S ++L+ RTHFAMA +++RYYLNG+ KL A+ATDG Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + II+PRK + E+LR+L ++ + + + I ++ + + Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FP+ + VIP DK+ ++ L+QA+ R +I+ + + + V+ L L + Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ A E +N+ Y +DI FN Y+L+I++ ++S + + F +++SSV Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNI---RLTF--STADSSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I N +N ++ +V+MPMR+ Sbjct: 351 I--------NEVENPSDSAFVVMPMRL 369 >gi|307728078|ref|YP_003905302.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1003] gi|307582613|gb|ADN56011.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1003] Length = 367 Score = 186 bits (471), Expect = 7e-45, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGETVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I A+ +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367 >gi|323524379|ref|YP_004226532.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1001] gi|323381381|gb|ADX53472.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1001] Length = 367 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGESVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I A+ +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367 >gi|160872676|ref|ZP_02062808.1| DNA polymerase III, beta subunit [Rickettsiella grylli] gi|159121475|gb|EDP46813.1| DNA polymerase III, beta subunit [Rickettsiella grylli] Length = 370 Score = 186 bits (471), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 121/395 (30%), Positives = 221/395 (55%), Gaps = 35/395 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M+ T+ R +L+ L +IER+ T+P+ ++L++ ND L + + E+E+ G I Sbjct: 1 MQFTINREILLKPLQLVTAVIERRQTLPILSNLLIRLNDRNLSLLGTDMEVELAGRITLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 P G+ T A L DI R L + +++ F + G ++ + G F L + P + Sbjct: 61 KPGQ---SGTTTAPARKLMDICRSLPEESELKF---QQKGDKLYLQSGRCRFNLSTLPAT 114 Query: 117 EFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +FP + F L+ L++L+E T+FAMA +++RY+LNG+ + ++ L+ A Sbjct: 115 DFPISEALDNHPEQAKFVLSPKGLRSLIESTNFAMAHQDVRYFLNGMLWELDRGSLR--A 172 Query: 174 VATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHL 230 VATDGHRLA V E +I + IIVPRKA+ E+ R+LS +++ S+ + L+++++ + Sbjct: 173 VATDGHRLALNVKEANITVDNNQ---IIVPRKAIYELSRLLSDEENDSLTIFLTKNQLKV 229 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + + +LIDG FP+Y VIP S DK ++ + ++ RVS++S+ + ++V L L Sbjct: 230 AMQDYTFTSKLIDGTFPDYDRVIPKSGDKIFEIDRDLFKASLLRVSVLSNDKHKSVCLEL 289 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + L + +N + A + +++ Y+ + I FN YL+++++++ + V L Sbjct: 290 RRNLLRIFANNLEQEDAEDYLDIAYHGKDISIAFNINYLIDVLNSLPA-----GPVKITL 344 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ +SV + K+KD+ YV+MPMRI Sbjct: 345 TSAEASVRLESKEKDA---------GLYVIMPMRI 370 >gi|161831398|ref|YP_001595902.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331] gi|161763265|gb|ABX78907.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331] Length = 369 Score = 185 bits (470), Expect = 8e-45, Method: Compositional matrix adjust. Identities = 118/387 (30%), Positives = 203/387 (52%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R +L+ L ++ERK T+P+ +VLL L I + E+E+ G Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + S +T+ L DI R L D A I +++ E ++ + G S F L + P +F Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E L S ++L+ RTHFAMA +++RYYLNG+ KL A+ATDG Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + II+PRK + E+LR+L ++ + + + I ++ + + Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALAAIRIGNNHIGVSTNDFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FP+ + VIP DK+ ++ L+QA+ R +I+ + + + V+ L L + Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ A E +N+ Y +DI FN Y+L+I++ ++S + + F +++SSV Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNI---RLTF--STADSSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I N +N ++ +V+MPMR+ Sbjct: 351 I--------NEVENPSDSAFVVMPMRL 369 >gi|225025477|ref|ZP_03714669.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC 23834] gi|224941761|gb|EEG22970.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC 23834] Length = 367 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 208/385 (54%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ERK+T+P+ +VL++ G I A+ EI+I P + Sbjct: 4 LEAERDTLLKPLQAVTGIVERKHTLPILSNVLIERTGGQTNILATDLEIQIHTHGPHTDA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120 IT +A L DI+R L +GA ++ + +N L + G S F LQ+ P +FP Sbjct: 64 EDFRITTNAKKLQDILRALPEGAIVALDWAQNRL----TLKTGKSRFALQTLPAEDFPLM 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EE V +F L +N++ + +AMA ++IRYYLNG+ + +L+L VATDGHR Sbjct: 120 SIGEEVVSAFTLPQETFRNMLSQVQYAMAVQDIRYYLNGLLMQVEGSNLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + I A + K +I+PRK V E+ ++L+ + V V L +++ + + Sbjct: 178 LAYSAAVIDADLPKA-EVILPRKTVLELFKLLNRPEEPVTVELLNNQVRFRCNDTVVVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG+FP++ VIP NDK + A++R +I+++ + + V+L L L + Sbjct: 237 VVDGKFPDFNRVIPQDNDKIFLLGRQPFLGALERAAILANEKFRGVRLQLRPGLLSVLCS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y +++ FN YL++++ N+ ++++ ++ F D++ S++F Sbjct: 297 NSEQEEAREELEIAYQGAELEVGFNINYLMDVLRNVHAEDI---QLAFG-DANRSTLFTI 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K Y++MPMRI Sbjct: 353 PDNADFK----------YIVMPMRI 367 >gi|307825355|ref|ZP_07655574.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96] gi|307733530|gb|EFO04388.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96] Length = 366 Score = 185 bits (470), Expect = 9e-45, Method: Compositional matrix adjust. Identities = 117/385 (30%), Positives = 203/385 (52%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +IL L +IE++ T+P+ +VL+ + L + + EI+I I + Sbjct: 1 MKFIINREEILVPLQQIVSVIEKRQTMPILSNVLMVIEENQLILTGTDLEIQIIAKINIA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSITV A DI R L +GA+I F +++ +V I+ S F L P +P Sbjct: 61 TATPGSITVPARKFLDICRLLPNGAEIKFELQDD---KVKIASSRSRFSLSCLPADNYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + K +++T F MA +++RYYLNG+ +++ LKL VA+DGHR Sbjct: 118 FAESELENHLFINAGKFKKALDKTVFCMANQDVRYYLNGLLLNVSNSKLKL--VASDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ E ++ II+PRK V E+ R+L ++ +KV S + I + I++L S + Sbjct: 176 LSIYEDNLDQATGFEARIILPRKGVLELNRLLDDPEAELKVEFSSNNIRIFIKNLIFSAK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+D ++P++ V ++ + L++A+ RV+I+S+ + + V + D L ++ Sbjct: 236 LVDSKYPDFGKVFQQEFFNQIHIQKQILKEALTRVAILSNEKFKGVTFDIKPDSLKISTH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + Y P+ I FN +YLL+ + N+ S + V + S+ SS FI Sbjct: 296 NPEHDEAEEELFIEYTGEPLTIAFNAQYLLDAVSNLDS-----ELAVLTIASNASSCFI- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + K +++MPMR+ Sbjct: 350 ----DEPGDCGYK----FIVMPMRL 366 >gi|329902528|ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548756|gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 110/368 (29%), Positives = 199/368 (54%), Gaps = 22/368 (5%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIV 78 I+ER++T+P+ ++L++ + + ++ E++IT I + + TV+A L DI+ Sbjct: 4 IVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLLDIL 63 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS-TKEEEYVYSFELASSVL 137 R L + +S N+ + + G S F LQ+ EFP+ T+ E Y L L Sbjct: 64 RALPESGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQKTL 120 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 K+L HF+MA ++IRYYLNG+ ++ +++ AVATDGHRLA +V+ + + Sbjct: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNV--IAVATDGHRLAFCQVETEQEFTRQ-E 177 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +I+PRK + E+ R+L D V++ ++ +++ L + + +L++G+FP+Y V+P Sbjct: 178 VIIPRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPKGY 237 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE 317 + L +++ R +IM+S + + V+ ++ + ++ N D +++E + + Y Sbjct: 238 KNNFTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDYGG 297 Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377 +DI FN YLL++++N+ D+V L +NSS I D N D K Sbjct: 298 DSVDIGFNVTYLLDVLNNLKC-----DQVNIALGDANSSALITIPD-----NADFK---- 343 Query: 378 YVLMPMRI 385 YV+MPMRI Sbjct: 344 YVVMPMRI 351 >gi|187927114|ref|YP_001897601.1| DNA polymerase III subunit beta [Ralstonia pickettii 12J] gi|309780181|ref|ZP_07674932.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA] gi|187724004|gb|ACD25169.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12J] gi|308920884|gb|EFP66530.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 371 Score = 185 bits (470), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 202/392 (51%), Gaps = 33/392 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57 + R ++L L I+ER++T+P+ ++L+ + ++ EI+IT GA Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADCGAG 63 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 V + TV+A L DI+R + DG + + + G S F LQ+ E Sbjct: 64 AGDV----ATTVAARKLVDILRAMPDGEVALTLNDKRM----TVQSGKSRFALQTLAAEE 115 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVAT Sbjct: 116 FPTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 DGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 174 DGHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFG 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 234 NIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTN 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L S Sbjct: 294 VLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDS 348 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS I D D+ YV+MPMRI Sbjct: 349 NSSALITLPDDDTFK---------YVVMPMRI 371 >gi|170694068|ref|ZP_02885224.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M] gi|170141140|gb|EDT09312.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M] Length = 367 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 213/387 (55%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDTVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + ++Y + + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I A+ +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y+ +DI FN YLL+++ N+ VD V D+S+S++ Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK----VDTLQVSLGDASSSALI 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + K YV+MPMRI Sbjct: 351 TIPENDEFK----------YVVMPMRI 367 >gi|134294130|ref|YP_001117865.1| DNA polymerase III subunit beta [Burkholderia vietnamiensis G4] gi|134137287|gb|ABO53030.1| DNA polymerase III, beta subunit [Burkholderia vietnamiensis G4] Length = 368 Score = 185 bits (469), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFAASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 176 HRLAFSSMKIEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGGVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368 >gi|241661627|ref|YP_002979987.1| DNA polymerase III subunit beta [Ralstonia pickettii 12D] gi|240863654|gb|ACS61315.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12D] Length = 371 Score = 184 bits (468), Expect = 1e-44, Method: Compositional matrix adjust. Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 33/392 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57 + R ++L L I+ER++T+P+ ++L+ + ++ EI+IT GA Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADCGAG 63 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + + TV+A L DI+R + DG + + + G S F LQ+ E Sbjct: 64 AGDI----ATTVAARKLVDILRAMPDGEVALTLNDKRM----TVQSGKSRFALQTLAAEE 115 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVAT Sbjct: 116 FPTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 DGHRLA V+ Q A +I+PRK + E+ R+L D V V L+ +++ Sbjct: 174 DGHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFG 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 234 NIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTN 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L S Sbjct: 294 VLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDS 348 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS I D D+ YV+MPMRI Sbjct: 349 NSSALITLPDDDTFK---------YVVMPMRI 371 >gi|253995376|ref|YP_003047440.1| DNA polymerase III subunit beta [Methylotenera mobilis JLW8] gi|253982055|gb|ACT46913.1| DNA polymerase III, beta subunit [Methylotenera mobilis JLW8] Length = 366 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 114/386 (29%), Positives = 208/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+E+++T+P+ ++LL+A + + A+ E++I+ ++ ++ Sbjct: 1 MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSVDSA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 S T+SA L DI R L D + I+ + + + + G S F LQ+ P +++P Sbjct: 61 TSNDFSTTISAKKLLDICRSLPDNSDINMATND---SRITVKAGKSRFNLQTLPAADYPV 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 TK + + LK L+++ FAMA ++IRYYLNG+ + +L V TDGH Sbjct: 118 MTKTQSQGTVITIPQRQLKELLKQVEFAMAQQDIRYYLNGLLVEVVAN--RLNIVGTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ ++ K +I+PRK V E++++L + V V ++ ++++ + ++ + Sbjct: 176 RLSFTSTELKENYEKQ-DVILPRKTVIELIKLLDDSEEDVNVEIANNQVNFSFGNIRLIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG+FP+Y VIP + + A+ R SI+S+ + + +++ LS++ L + Sbjct: 235 KVIDGKFPDYNRVIPTGHQNTFTTERLGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D +A E + + Y +DI FN YL+++++N +S ++V F +NSS I Sbjct: 295 TNSDQEEAEEELEIAYGSDALDIGFNVTYLIDVLNNTNS-----EQVTFSFADANSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 NN D K YV+MPMRI Sbjct: 350 T-----LPNNPDYK----YVVMPMRI 366 >gi|209515896|ref|ZP_03264758.1| DNA polymerase III, beta subunit [Burkholderia sp. H160] gi|209503744|gb|EEA03738.1| DNA polymerase III, beta subunit [Burkholderia sp. H160] Length = 367 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + +G Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDSVATTVAARKLLDILRAMPEG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I A+ +I+PRK + E+ R+L D +VK+ ++++++ + + Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTVKIDIAQTQVKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNKFLIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367 >gi|325267546|ref|ZP_08134198.1| DNA-directed DNA polymerase III beta subunit [Kingella denitrificans ATCC 33394] gi|324980896|gb|EGC16556.1| DNA-directed DNA polymerase III beta subunit [Kingella denitrificans ATCC 33394] Length = 367 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 118/382 (30%), Positives = 204/382 (53%), Gaps = 25/382 (6%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPASVDVC 64 R D+L+ L I+ERK+T+P+ ++LLQ+ +G +++ A+ EI+I GA A D Sbjct: 8 RDDLLKPLQAVTGIVERKHTLPILSNILLQSENGQVQLLATDLEIQIHTLGAQGAQPDF- 66 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-E 123 IT +A L DI+R L D + + + ++ + G S F LQ+ P +FP+ + Sbjct: 67 -RITTNAKKLQDILRALPDSSTVQLDLADH---KLTLKAGKSRFNLQTLPAQDFPTMNVD 122 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E +F L LK+++ + +MA ++IR+YLNG+ L+L VATDGHRLA Sbjct: 123 ENTSAAFALPQETLKHMISQVQHSMAVQDIRFYLNGLLMQTEGNQLRL--VATDGHRLAF 180 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + ++ K +I+PRK V E+ ++L+ +V V L +++I + ++ID Sbjct: 181 TSATLETELPKH-DVILPRKTVLELNKLLTQPKENVVVELLDNQIRFRCNDTVIVSKVID 239 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G FP+Y VIP N ++ +L A++R SI+++ + + V+L + L +T N + Sbjct: 240 GRFPDYNRVIPMDNKNIFVIDRLSLLGALERSSILANEKFRGVRLLVQPGSLHITCTNNE 299 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A E +++ Y +D+ FN +LL+++ N+ SDEV ++ F D Sbjct: 300 QEEASEELDIAYQGESLDVGFNITFLLDLLRNVHSDEV---QLAF-----------GSAD 345 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 + + N+ YV+MPMRI Sbjct: 346 RATLFTVPNRPEFKYVVMPMRI 367 >gi|295675103|ref|YP_003603627.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002] gi|295434946|gb|ADG14116.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002] Length = 367 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDSVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I A+ +I+PRK + E+ R+L D ++ + ++++++ + + Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLNIDIAQTQVKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + ++ L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNKFQIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367 >gi|304570547|ref|YP_265835.2| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 370 Score = 184 bits (468), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 217/388 (55%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + D+ + L + +IE+++T+P+ +VLL A++ L I A+ ++ I + Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQI-NN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+V G+ T ++ ++YDI+RK G +I+ + +++ + S F L SEF Sbjct: 60 VEVIEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDV--SKLQVESEKSVFNLNCISASEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176 P T E F + S L L+ + F+++ +E R+YL+GIFFH + + K L A AT Sbjct: 118 PLTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HR++++++ + Q+ P II+P+K + ++ +L S D VK+S +S+I + + Sbjct: 178 DSHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSI 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LIDG+FPNY VIP +N K+L ++ +VDRV+ +S + VK +LS D L Sbjct: 237 LISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLN 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++V+N + G ES+ V ++ ++I FN +YL+++ + D++ E+ F D+ + + Sbjct: 297 LSVNNTNSGDGKESLTVKFDH-DLEISFNSRYLIDVASQLDGDKI---EIFFN-DTGSPA 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D DS +V+MPM+ Sbjct: 352 LIKDPGDFDS----------IFVVMPMK 369 >gi|262377660|ref|ZP_06070880.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145] gi|262307419|gb|EEY88562.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145] Length = 382 Score = 184 bits (467), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 118/403 (29%), Positives = 207/403 (51%), Gaps = 39/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + ++ +Q L + S E+E+ + + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNLKIQVTAQALTVTGSDLEVELVASTALA 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L DI + L A + E++ + G+S F L + P Sbjct: 61 EGACLQEGETTVPARKLIDICKSLPSAALVDLHITEDQ---RCILKSGNSRFVLGTLPAD 117 Query: 117 EFPSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E + + LK L E+T FAMA +++R+YL G I+ L+ AV Sbjct: 118 DYPLLNTENTQGTQVTVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLR--AVT 175 Query: 176 TDGHRLAVAEVDIVAQ-IAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 TDGHRLA+ E VAQ A P IVPRKAV E+ R+LS +D + + + +++ I Sbjct: 176 TDGHRLALCET--VAQSTATQPIQAIVPRKAVAELQRLLSVEDEQLSLLIGRELLNVTIN 233 Query: 234 SLS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 S + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ + Sbjct: 234 MSSRDKEQADIIVRFTTKLIDGKFPDYRRVIPRGGDKVVMIAHDVFKQSLQRVAILSNEK 293 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ V L+ ++D L + +NP+ +AIE + + Y + P+++ FN +YL+E++ + Sbjct: 294 LRGVFLNFNADSLQLRANNPEQDEAIEDLVIQYADSPLEMSFNAQYLIEVLGVLDG---- 349 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+V + +N SV ++ + YV+MPMR+ Sbjct: 350 -DDVSMTMTEANQSVLVQDPAHTDQT---------YVVMPMRV 382 >gi|91762458|ref|ZP_01264423.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|91718260|gb|EAS84910.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 370 Score = 184 bits (466), Expect = 2e-44, Method: Compositional matrix adjust. Identities = 120/388 (30%), Positives = 217/388 (55%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + D+ + L + +IE+++T+P+ +VLL A++ L I A+ ++ I + Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQI-NN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+V G+ T ++ ++YDI+RK G +I+ + +++ + S F L SEF Sbjct: 60 VEVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDV--SKLQVESEKSVFNLNCISASEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176 P T E F + S L L+ + F+++ +E R+YL+GIFFH + + K L A AT Sbjct: 118 PLTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HR++++++ + Q+ P II+P+K + ++ +L S D VK+S +S+I + + Sbjct: 178 DSHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSI 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LIDG+FPNY VIP +N K+L ++ +VDRV+ +S + VK +LS D L Sbjct: 237 LISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLN 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++V+N + G ES+ V ++ ++I FN +YL+++ + D++ E+ F D+ + + Sbjct: 297 LSVNNTNSGDGKESLTVKFDH-DLEISFNSRYLIDVAAQLDGDKI---EIFFN-DTGSPA 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D DS +V+MPM+ Sbjct: 352 LIKDPGDFDS----------IFVVMPMK 369 >gi|53717713|ref|YP_106699.1| DNA polymerase III subunit beta [Burkholderia pseudomallei K96243] gi|53724902|ref|YP_101863.1| DNA polymerase III subunit beta [Burkholderia mallei ATCC 23344] gi|67642368|ref|ZP_00441125.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4] gi|76811898|ref|YP_331716.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1710b] gi|121599744|ref|YP_994143.1| DNA polymerase III subunit beta [Burkholderia mallei SAVP1] gi|124384769|ref|YP_001028200.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10229] gi|126438733|ref|YP_001057143.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 668] gi|126448071|ref|YP_001079585.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10247] gi|134281596|ref|ZP_01768304.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305] gi|167001181|ref|ZP_02266980.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20] gi|167717461|ref|ZP_02400697.1| DNA polymerase III subunit beta [Burkholderia pseudomallei DM98] gi|167736496|ref|ZP_02409270.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 14] gi|167813574|ref|ZP_02445254.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 91] gi|167822115|ref|ZP_02453586.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 9] gi|167843720|ref|ZP_02469228.1| DNA polymerase III subunit beta [Burkholderia pseudomallei B7210] gi|167892199|ref|ZP_02479601.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 7894] gi|167900711|ref|ZP_02487916.1| DNA polymerase III subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167908928|ref|ZP_02496019.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 112] gi|167916969|ref|ZP_02504060.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BCC215] gi|217423948|ref|ZP_03455448.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576] gi|226193089|ref|ZP_03788699.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237814479|ref|YP_002898930.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei MSHR346] gi|254175303|ref|ZP_04881964.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399] gi|254184147|ref|ZP_04890738.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655] gi|254186618|ref|ZP_04893135.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254194524|ref|ZP_04900955.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13] gi|254201968|ref|ZP_04908332.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH] gi|254207300|ref|ZP_04913651.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU] gi|254259557|ref|ZP_04950611.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a] gi|254298587|ref|ZP_04966038.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e] gi|254359609|ref|ZP_04975880.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280] gi|52208127|emb|CAH34057.1| DNA polymerase III, beta chain [Burkholderia pseudomallei K96243] gi|52428325|gb|AAU48918.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 23344] gi|76581351|gb|ABA50826.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710b] gi|121228554|gb|ABM51072.1| DNA polymerase III, beta subunit [Burkholderia mallei SAVP1] gi|124292789|gb|ABN02058.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10229] gi|126218226|gb|ABN81732.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 668] gi|126240941|gb|ABO04034.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10247] gi|134247263|gb|EBA47349.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305] gi|147747862|gb|EDK54938.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH] gi|147752842|gb|EDK59908.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU] gi|148028823|gb|EDK86755.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280] gi|157808569|gb|EDO85739.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e] gi|157934303|gb|EDO89973.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696348|gb|EDP86318.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399] gi|169651274|gb|EDS83967.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13] gi|184214679|gb|EDU11722.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655] gi|217393011|gb|EEC33033.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576] gi|225934689|gb|EEH30666.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237506469|gb|ACQ98787.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei MSHR346] gi|238523507|gb|EEP86945.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4] gi|243063008|gb|EES45194.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20] gi|254218246|gb|EET07630.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a] Length = 367 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 205/387 (52%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 176 HRLAFSSMKIEGSFGRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367 >gi|83720585|ref|YP_443734.1| DNA polymerase III subunit beta [Burkholderia thailandensis E264] gi|167582969|ref|ZP_02375843.1| DNA polymerase III subunit beta [Burkholderia thailandensis TXDOH] gi|167620900|ref|ZP_02389531.1| DNA polymerase III subunit beta [Burkholderia thailandensis Bt4] gi|83654410|gb|ABC38473.1| DNA polymerase III, beta subunit [Burkholderia thailandensis E264] Length = 367 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 206/387 (53%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I ++ +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 176 HRLAFSSMKIEGSFSRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367 >gi|167834928|ref|ZP_02461811.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43] Length = 367 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 205/387 (52%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 176 HRLAFSSMKIEGAFGRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367 >gi|53802864|ref|YP_115419.1| DNA polymerase III subunit beta [Methylococcus capsulatus str. Bath] gi|53756625|gb|AAU90916.1| DNA polymerase III, beta subunit [Methylococcus capsulatus str. Bath] Length = 366 Score = 184 bits (466), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 113/387 (29%), Positives = 208/387 (53%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R D+L L +IER+ T+P+ +VL++ G +E+ + E+++ Sbjct: 1 MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDME 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TV A L DI R L +G +++F + E V++ G S F L + P +P+ Sbjct: 61 GKESGRFTVPARKLMDICRLLPEGGELAFDVKPE---RVSLQCGKSRFILGALPAENYPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F+ + +L+ +E+T FAMA +++RYYLNG+ I + ++ AVA+DGHR Sbjct: 118 FEHGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQGRIR--AVASDGHR 175 Query: 181 LAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA+ E VD + +A+ II+PRK V E+ R+L+ + S V +S + + + + S + Sbjct: 176 LALFEDAVDGMPDVAR--QIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFA 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 V+L++G +P+Y+ VIP + + + V+ LR A+ RV+++S+ + + V L + + + Sbjct: 234 VKLVEGRYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLR 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ +A + + + + FN YLL+ I+ ++S D V +N S Sbjct: 294 AQNPEHEEAEDEVPADVSGEAFAVGFNASYLLDAINAVAS-----DAVRMSFTDANGSCL 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ D++ +++MPMR+ Sbjct: 349 I-------EDLSDSRYR--FIVMPMRL 366 >gi|73667428|ref|YP_303444.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake] gi|72394569|gb|AAZ68846.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake] Length = 375 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 122/385 (31%), Positives = 206/385 (53%), Gaps = 24/385 (6%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + +L+ L + ++E++++I V V ++A D + + ++ +I I +I A ++ Sbjct: 11 VSKDKLLQALSYINSVVEKRHSIVVLSCVRIEAKDHQINLTSTDLDISIIASISAHINEN 70 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + VSA LLYDIV+KL + +I F K+ L E G + F+L +FP + Sbjct: 71 GVVVVSAQLLYDIVKKLPNDIEIKFVIGKDGRLVIEC----GRTEFFLPVVDIEKFPIIE 126 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 E F L S L NL +T FA++ EE R+ LNG++ H D LC ATDGHRL+ Sbjct: 127 NNELQNKFTLQVSELVNLFGKTKFAISVEESRFNLNGVYVH--TADNILCCAATDGHRLS 184 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVR 240 +A++ + IIVP+K V EIL+I+S S + + VSLS+ +I + + + Sbjct: 185 LAKLSKSQNMLSNFGIIVPKKTVNEILKIVSHGSNNDLISVSLSDRKICFEYQEYILISK 244 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG FP+Y +IP S++K + + L A+DRVS++ +++ +KL +KL ++ Sbjct: 245 VIDGTFPDYNAIIPKSHNKSVLIESEVLSNAIDRVSVVVFDKVKVIKLRFVDNKLILSAA 304 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + D G A E + V Y+ M I N +YL+E + V + + + +SV ++ Sbjct: 305 SSDQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCVKGKCILSFYDAGTSVLMQ 358 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++N + Y++MPMRI Sbjct: 359 --------EQENIDDFTYIIMPMRI 375 >gi|153875362|ref|ZP_02003200.1| DNA polymerase III, beta chain [Beggiatoa sp. PS] gi|152068174|gb|EDN66800.1| DNA polymerase III, beta chain [Beggiatoa sp. PS] Length = 375 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 120/394 (30%), Positives = 216/394 (54%), Gaps = 28/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R ++L L ++E++ T+P+ + L+ D L A+ E+EI ++P S Sbjct: 1 MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60 Query: 61 VDVCGS-----ITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSF 113 D G+ T+ A +DI R L D A+I E+E + + G S F LQ+ Sbjct: 61 SDNLGTDHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDETSQAI-VKAGKSKFKLQTL 119 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P +FP+ E + F ++ LK+L+ +T F +A ++RYYL G+ I+ D K+ Sbjct: 120 PADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEIS--DGKISL 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232 + TDGHR+AVA+ D + + +I+PRKAV E+ ++L+ +++SV+VS ++ I + Sbjct: 178 IGTDGHRMAVAQHDFEGE--ENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKL 235 Query: 233 -ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 +SL M +LIDG FP++ VIP +K + L+QA+ R SI+S+ + + ++ +L+ Sbjct: 236 SDSLIMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLT 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + L ++ N +A E + V Y +++ FN Y+L+ I+ IS+ V ++ F +D Sbjct: 296 ENLLTISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKTV---QLAF-VD 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++S + + ++DSK +++MPMR+ Sbjct: 352 QNSSCLIMEEDNEDSK----------FIVMPMRL 375 >gi|188590797|ref|YP_001795397.1| DNA polymerase III subunit beta [Cupriavidus taiwanensis LMG 19424] gi|170937691|emb|CAP62675.1| DNA polymerase III, beta-subunit [Cupriavidus taiwanensis LMG 19424] Length = 371 Score = 183 bits (465), Expect = 3e-44, Method: Compositional matrix adjust. Identities = 121/393 (30%), Positives = 203/393 (51%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59 Query: 63 VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG + TV+A L DI+R + DG + + + G S F LQ+ Sbjct: 60 -CGVGNDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E E+ S L K+L+ HFAMA ++IRYYLNG+ + E K+ AVA Sbjct: 115 EFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVV--EGKKVMAVA 172 Query: 176 TDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V++ A + +I+PRK + E+ R+L D V V L+ +++ Sbjct: 173 TDGHRLAYCGVELENEAAGVGSRQEVIIPRKTILELQRLLEDNDDPVTVQLAANQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ + ++V L Sbjct: 293 HMLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKT-----EQVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I D D N YV+MPMRI Sbjct: 348 SNSSALITVPDDD---------NFKYVVMPMRI 371 >gi|319945019|ref|ZP_08019281.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis ATCC 51599] gi|319741589|gb|EFV94014.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis ATCC 51599] Length = 384 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 122/403 (30%), Positives = 207/403 (51%), Gaps = 42/403 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASV 61 I R +L+ L IIE+++T P+ +VL++ + + EI++ T A + Sbjct: 4 IHAPRDAVLKPLQTVAGIIEKRHTQPILANVLIRQQGEAVTFTGTDMEIQVRTQASIGAG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPS 120 + TVSA L DI+R L D ++ EL G ++N+ S F LQ+ P +FP Sbjct: 64 SGTTATTVSAKKLIDILRALPD-TDVTI----ELNGNKLNLKTTRSRFALQTLPSEDFPV 118 Query: 121 TKE------------------EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162 K + L+ L++L++ HFAMA ++IR+YLNG+ Sbjct: 119 MKAGATDQAGPGSGSAGDGSTADLRADVTLSQKKLRHLLQMVHFAMAQQDIRFYLNGLLL 178 Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 ++ ++ AVAT+GHRLA E D+ A I+PRK+V E+LR+L D V++ Sbjct: 179 VLSPAGMR--AVATEGHRLAFCE-DVEVHAAGQADAILPRKSVLELLRLLGDSDEPVRME 235 Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 + +++ L + +L++G+FP+YQ VIP K + + L QA+ R SI+S+ + Sbjct: 236 IIGTQVRLRFGDIEFISKLLEGKFPDYQRVIPKGYQKVIELERETLAQALQRASILSNEK 295 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V+L L+ +L + N + +A E +++ Y P+DI FN YLL+++ + +D V Sbjct: 296 FRGVRLGLAPGRLGIQSSNTEQEEASEEIDIDYGGAPLDIGFNVSYLLDVLGTLKTDRVT 355 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + F D+++S++ D+ + YVLMPMRI Sbjct: 356 ---MAFG-DATSSALLTLPGDESFR----------YVLMPMRI 384 >gi|262277741|ref|ZP_06055534.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114] gi|262224844|gb|EEY75303.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114] Length = 369 Score = 183 bits (464), Expect = 4e-44, Method: Compositional matrix adjust. Identities = 114/389 (29%), Positives = 210/389 (53%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R +L+ L H ++E+KNT+P+ +VL++A+DG L++ A+ +I IT + Sbjct: 1 MEFKIDRDVLLKSLAHVQGVVEKKNTLPILGNVLIEAHDGFLKLTATDLDIIITEKLTCQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS T +A ++YDIVRKL+ G+ + KEN + + G S+F L EFP Sbjct: 61 TIKEGSTTTTAQVIYDIVRKLKTGSSLHLSLKEN---NRLKLISGKSDFNLTCISPDEFP 117 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +E+Y+ E+ S ++ +T F+++ +E R+YLNG++ + + KL AVAT Sbjct: 118 ILEDNMDEQYL---EIPSFEFLKIINKTKFSISNDETRHYLNGVYLDKKDGENKLIAVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRL+ + +I S+I+P+K V E+L I+ ++K+ ++S+I + + Sbjct: 175 DGHRLSKSATEIKGA-DNFQSVILPKKTVFELLTIIDEDSINLKILSTKSKIKFLYKDIV 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++IDG+FP+Y+ VIP + N A+DR+ +SS R +K+SL + Sbjct: 234 LISKVIDGKFPDYEKVIPKDERIAAKSNVEEFISALDRLKSLSSDRKGVIKISLDKGLMK 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +++ G IE + Y ++I FN YL+++ + + S ++V L + S Sbjct: 294 FLINDAISGDGIEEVQTQYQGEHLEIGFNSTYLIDVANVLES-----KDIVLMLKDATSP 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ ++ + Y++MPMR+ Sbjct: 349 IQVKD---------ESDPLSTYIVMPMRV 368 >gi|254251051|ref|ZP_04944369.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158] gi|124893660|gb|EAY67540.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158] Length = 368 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 204/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ ++ L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368 >gi|154706526|ref|YP_001423441.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111] gi|154355812|gb|ABS77274.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111] Length = 369 Score = 183 bits (464), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 118/387 (30%), Positives = 202/387 (52%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R +L+ L ++ERK T+P+ +VLL L I + E+E+ G Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + S +T+ L DI R L D A I +++ E ++ + G S F L + P +F Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E L S ++L+ RTHFAMA +++RYYLNG+ KL A+ATDG Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + II+PRK + E+LR+L ++ + + + I ++ + + Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FP+ + VIP DK+ ++ L+QA+ R +I+ + + + V L L + Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVCFELRQGLLRIL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ A E +N+ Y +DI FN Y+L+I++ ++S + + F +++SSV Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNI---RLTF--STADSSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I N +N ++ +V+MPMR+ Sbjct: 351 I--------NEVENPSDSAFVVMPMRL 369 >gi|91781386|ref|YP_556592.1| DNA polymerase III subunit beta [Burkholderia xenovorans LB400] gi|187922037|ref|YP_001893679.1| DNA polymerase III subunit beta [Burkholderia phytofirmans PsJN] gi|296157626|ref|ZP_06840461.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1] gi|91685340|gb|ABE28540.1| DNA polymerase III, beta subunit [Burkholderia xenovorans LB400] gi|187713231|gb|ACD14455.1| DNA polymerase III, beta subunit [Burkholderia phytofirmans PsJN] gi|295892398|gb|EFG72181.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1] Length = 367 Score = 182 bits (463), Expect = 5e-44, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 212/387 (54%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDSVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + ++Y + + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 176 HRLAFSSMKIEGSFQRQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y+ +DI FN YLL+++ N+ VD V D+S+S++ Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK----VDTLQVSLGDASSSALI 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + K YV+MPMRI Sbjct: 351 TIPENDEFK----------YVVMPMRI 367 >gi|222053119|ref|YP_002535481.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32] gi|221562408|gb|ACM18380.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32] Length = 372 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 113/390 (28%), Positives = 215/390 (55%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + + L I+E++NT+P+ + L++A++GLL I A+ E+ + + P + Sbjct: 1 MEFSISKETFTKALQKIQGIVEKRNTMPILSNALIEASNGLLHITATDLEVGMKSSYPVT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV+A +Y+I+++L D +I+F KEN+ + I G ++F + EFP Sbjct: 61 IAKEGKITVAAKKIYEIIKELSD-EEITFSTKENDW---IEIHCGKAHFNIVGLSPDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 + L+++ L ++E+T +A+ T+E ++ LNGIF E+ + + VATD Sbjct: 117 YFPKVNDNIFVNLSNNFLSEMIEKTSYAICTDESKFNLNGIFIKAASEEGRNVIRMVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 GHRL+V + I+ S +I P+K + E+ +I + + + ++ + ++ Sbjct: 177 GHRLSVTNKEFEGAISNELSKGVIFPKKGIYELKKIAEEESGDIMMGFMDNSAVIKKDNT 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +RLIDGEFP+Y VIP +NDK++ V+ L ++ R++I+SS + + +KL + S + Sbjct: 237 VIVMRLIDGEFPDYTKVIPANNDKKVTVSREALLHSLRRMAILSSEKFKGIKLDVRSGSI 296 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ NP++G A E V Y+ P+ + FN +YL++++ + DD+V L S Sbjct: 297 EISSSNPELGDAREEQEVLYDGTPLSVRFNARYLIDVLTVLR-----DDQVELDLRDELS 351 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ KD + V+MPMR+ Sbjct: 352 PIIMKPIAKD---------DFMSVIMPMRL 372 >gi|126451494|ref|YP_001064387.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1106a] gi|242316207|ref|ZP_04815223.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b] gi|126225136|gb|ABN88676.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106a] gi|242139446|gb|EES25848.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b] Length = 367 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 204/387 (52%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + L AVATDG Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--SLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 176 HRLAFSSMKIEGSFGRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367 >gi|255020210|ref|ZP_05292279.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254970352|gb|EET27845.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 365 Score = 182 bits (463), Expect = 6e-44, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 201/387 (51%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER +L LL + +R+ P+ H+L+ A L A+ EI++ IPA Sbjct: 1 MKIRVERDTLLPLLASMVSVADRRPIQPILSHLLVTAESDSLRCVATDLEIQLLAHIPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS + A LYDI R L + + + ++ E + + G + F+LQS P +FP Sbjct: 61 VEQAGSCAIPARKLYDICRSLPESSTLDILRDKE---RIALRCGSARFHLQSLPAEQFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ ++S + + + L++ + AMA + R++LNG+ + E +L+ VATDGHR Sbjct: 118 SSNDDTLFSGQCSGTTLRDALSIAATAMAQNDARFFLNGVLLEVAEHELR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA + A A++PS I+PRKAV E+ R+L +D +++ L + I L + + Sbjct: 176 LARMTLPF-AHAAELPSYQGILPRKAVLELGRLLDEQD--IELRLGHNAIVLVNDRMQFR 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LID +P+Y+ VIP + + +V+ L+QA+ +++++SS + A L + L + Sbjct: 233 CKLIDARYPDYRRVIPLGHPERAQVDRLALKQALTQINVLSSDKNPACVLKFQTTSLSLR 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A + V Y ++I FN YL + S+ + E+ +L + SSV Sbjct: 293 SRNEEQEEAEVEIPVQYGGAGLEIAFNSHYLAD-----STQIFTESEIAMQLKDNGSSVL 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MP+R+ Sbjct: 348 FTPLKGD---------NPLYIVMPIRL 365 >gi|226225408|ref|YP_002759514.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27] gi|226088599|dbj|BAH37044.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27] Length = 370 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R + E L + K T+PV ++L++ D + A+ +I ++ + A Sbjct: 1 MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVSAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+IT+ A L +I R+L +IS E V + G S F L P EFP Sbjct: 61 VETPGAITIPAKKLGEIARELPPSPVKISASGEQR----VTLECGRSKFKLLGLPRDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + S+ + S L+ L+ T FA++ EE R LNG+ + + EE +++ VAT+GH Sbjct: 117 TFPSVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREERMRM--VATNGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA E+ + A A +IVP KA+ +I R+ +++ ++ ++ HL S SV Sbjct: 175 RLAKMELPVEASSAPPGDLIVPPKALEQIRRLFPAEE---ELEIARGDNHLGFRSPFTSV 231 Query: 240 --RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL++G +PNY+ VIP ND+ + L A+ R+S+++S + +K+S +S L Sbjct: 232 FTRLVEGPYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKF 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V PD+G+A + + + Y +DI FN YLLEI+ + +++V + F+ +++ Sbjct: 292 SVTTPDLGEASDELPINYTGDQLDIGFNATYLLEILRFMPTEQV---RLTFKAPERAATI 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D +K ++MP+R+ Sbjct: 349 EPEGWDDPAKY--------LCLVMPLRL 368 >gi|325528072|gb|EGD05284.1| DNA polymerase III subunit beta [Burkholderia sp. TJI49] Length = 368 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 111/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368 >gi|91785915|ref|YP_546867.1| DNA polymerase III subunit beta [Polaromonas sp. JS666] gi|91695140|gb|ABE41969.1| DNA polymerase III, beta subunit [Polaromonas sp. JS666] Length = 368 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 117/383 (30%), Positives = 202/383 (52%), Gaps = 32/383 (8%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---- 65 +L +L I+ER++T+P+ +VL++ L++ S EI+I S D+ G Sbjct: 11 VLSVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIR----TSADLDGDAGN 66 Query: 66 -SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 + TV A L DI+R + +S +++ + G S F LQ+ P +FP +E Sbjct: 67 FTTTVGARKLIDILRSMPSDQTVSL---ESAQSKLILKGGKSRFTLQTLPAEDFPLVQEA 123 Query: 125 -EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + SF + VLK L+ + FAMA +IRYYLNGI F E +L VATDGHRLA Sbjct: 124 ANFGPSFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAF 181 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + + ++ K +I+PRK V E+ R+LS K+ ++++ + ++ + E + +L++ Sbjct: 182 SSATLDVEVPKQ-EVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVE 240 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +I++S + + V+L++ L + +N + Sbjct: 241 GKFPDYNRVIPKNHKNIITLGRVPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASNNAE 300 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++ + N+ D V L SNSS + D Sbjct: 301 QEEAVDELDIDYGGDAIEIGFNVTYLIDALANMEQ-----DMVKIELADSNSSALLTIPD 355 Query: 364 KDSKNNKDNKVNAF-YVLMPMRI 385 AF YV+MPMRI Sbjct: 356 D----------AAFKYVVMPMRI 368 >gi|167560989|ref|ZP_02353905.1| DNA polymerase III subunit beta [Burkholderia oklahomensis EO147] gi|167568253|ref|ZP_02361127.1| DNA polymerase III subunit beta [Burkholderia oklahomensis C6786] Length = 367 Score = 182 bits (462), Expect = 8e-44, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 204/387 (52%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLTLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + L AVATDG Sbjct: 118 TVAQAKDFGASLSVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--SLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 176 HRLAFSSMKIEGAFPRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNSFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367 >gi|261400580|ref|ZP_05986705.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970] gi|269209656|gb|EEZ76111.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970] Length = 367 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 119/389 (30%), Positives = 209/389 (53%), Gaps = 31/389 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I + P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPE--- 60 Query: 63 VCGS----ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 CG+ IT +A DI+R L GA +S + +N L + G S F LQ+ P + Sbjct: 61 -CGAADFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPADD 115 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E+ +FEL K ++ + ++MA ++IRYYLNG+ + L+L VAT Sbjct: 116 FPQINIGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA + I A + + +I+PRK V E+ ++L++ ++V L + ++ + Sbjct: 174 DGHRLAYSACAIGADLPRA-ELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++IDG+FP++ VIP NDK ++ L A++R +I+++ +I+ +L L L Sbjct: 233 IVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLS 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N + +A E + + Y ++ FN YL++++ NI +D D ++ F D++ + Sbjct: 293 VVCSNNEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHTD---DMQLAFG-DANRPT 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +F D+ N K YV+MPMRI Sbjct: 349 LFTV---PDNPNFK-------YVVMPMRI 367 >gi|78064660|ref|YP_367429.1| DNA polymerase III subunit beta [Burkholderia sp. 383] gi|115350058|ref|YP_771897.1| DNA polymerase III subunit beta [Burkholderia ambifaria AMMD] gi|170697755|ref|ZP_02888842.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10] gi|172059069|ref|YP_001806721.1| DNA polymerase III subunit beta [Burkholderia ambifaria MC40-6] gi|77965405|gb|ABB06785.1| DNA polymerase III, beta subunit [Burkholderia sp. 383] gi|115280046|gb|ABI85563.1| DNA polymerase III, beta subunit [Burkholderia ambifaria AMMD] gi|170137370|gb|EDT05611.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10] gi|171991586|gb|ACB62505.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MC40-6] Length = 368 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/387 (28%), Positives = 208/387 (53%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V V D+S+S++ Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKVDTV----QVSLGDASSSALI 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++++ K YV+MPMRI Sbjct: 352 TVPENEEFK----------YVVMPMRI 368 >gi|107024099|ref|YP_622426.1| DNA polymerase III subunit beta [Burkholderia cenocepacia AU 1054] gi|116688026|ref|YP_833649.1| DNA polymerase III subunit beta [Burkholderia cenocepacia HI2424] gi|170731358|ref|YP_001763305.1| DNA polymerase III subunit beta [Burkholderia cenocepacia MC0-3] gi|206558824|ref|YP_002229584.1| DNA polymerase III subunit beta [Burkholderia cenocepacia J2315] gi|105894288|gb|ABF77453.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia AU 1054] gi|116646115|gb|ABK06756.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia HI2424] gi|169814600|gb|ACA89183.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia MC0-3] gi|198034861|emb|CAR50733.1| DNA polymerase III, beta chain [Burkholderia cenocepacia J2315] Length = 368 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQIATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368 >gi|171316344|ref|ZP_02905564.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5] gi|171098473|gb|EDT43275.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5] Length = 368 Score = 182 bits (461), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 110/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368 >gi|189423084|ref|YP_001950261.1| DNA polymerase III subunit beta [Geobacter lovleyi SZ] gi|189419343|gb|ACD93741.1| DNA polymerase III, beta subunit [Geobacter lovleyi SZ] Length = 372 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 211/390 (54%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R L+ L I+E++ ++P+ ++L++A LEI A+ E+ + G PA Sbjct: 1 MNFKIDRDTFLKALQKVQGIVEKRTSMPILSNILIEAQGDNLEIIATDLEVGLKGNYPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G ITV A LY+IV++L + +I+F KEN+ V I+ G F + P EFP Sbjct: 61 VEKDGRITVGAKKLYEIVKELPN-QEITFSTKENDW---VEITCGKVRFNIVGLPSDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC--AVATD 177 + + EL +++L+ ++E+T +A+ +E +Y LNGIF + + + C VATD Sbjct: 117 AVATVKDEQLLELEAALLRKMIEKTSYAICNDETKYNLNGIFTRVEQSEKGQCLKMVATD 176 Query: 178 GHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 GHRL++A A + +I+P+K + EI +I D ++ +S + Sbjct: 177 GHRLSIASGPFSGTANPELLKGVILPKKGIFEIKKITDEGDGLLQFGFVDSSAVIKKGDT 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++ +RL+DGEFP+Y VIP +N++ ++ L AV R++I+SS + + + L + + + Sbjct: 237 TLIMRLVDGEFPDYTRVIPAANEQIVKAPREELIHAVRRMAILSSEKFKGIMLEIEGNAV 296 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ NP++G A+E ++V Y+ P + FN +YLL+++ S V+ + F+ + S S Sbjct: 297 KISSSNPELGDAMEELDVSYDGNPFSVRFNARYLLDVLMVCESQHVL---MKFKNELSPS 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V D+ V+MPMR+ Sbjct: 354 IV-----------TPDSDDELLAVIMPMRL 372 >gi|330814958|ref|YP_004358663.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3] gi|327367351|gb|AEA58707.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3] Length = 368 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 205/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGEQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 176 HRLAYSSMKIEGGAFPRQEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D + EV L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKVDNI---EV--SLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368 >gi|167589704|ref|ZP_02382092.1| DNA polymerase III subunit beta [Burkholderia ubonensis Bu] Length = 368 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 111/386 (28%), Positives = 202/386 (52%), Gaps = 24/386 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT V Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRADFGVG 63 Query: 62 -DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP+ Sbjct: 64 NDQVAT-TVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFPT 118 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDGH Sbjct: 119 VAQAKDFGASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + + I +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 177 RLAFSSMKIEGGAFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 237 KLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMS 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS I Sbjct: 297 TNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSALI 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D YV+MPMRI Sbjct: 352 TVPENDEFK---------YVVMPMRI 368 >gi|313669120|ref|YP_004049404.1| DNA polymerase III, beta subunit [Neisseria lactamica ST-640] gi|309379507|emb|CBX21873.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006582|emb|CBN88047.1| putative DNA polymerase III, beta subunit [Neisseria lactamica 020-06] Length = 367 Score = 181 bits (460), Expect = 1e-43, Method: Compositional matrix adjust. Identities = 118/389 (30%), Positives = 210/389 (53%), Gaps = 31/389 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I + P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPE--- 60 Query: 63 VCGS----ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 CG+ IT +A DI+R L GA +S + +N L + G S F LQ+ P + Sbjct: 61 -CGAADFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPADD 115 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E+ +FEL K ++ + ++MA ++IRYYLNG+ + L+L VAT Sbjct: 116 FPQINIGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA + I A + + +I+PRK V E+ ++L++ ++V L + ++ + Sbjct: 174 DGHRLAYSACAIDADLPRA-ELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++IDG+FP++ VIP NDK ++ L A++R +I+++ +I+ +L L L Sbjct: 233 IVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLS 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N + +A E + + Y ++ FN YL++++ NI +D++ ++ F D++ + Sbjct: 293 VVCSNNEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHTDDM---QLAFG-DANRPT 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +F D+ N K YV+MPMRI Sbjct: 349 LFTV---PDNPNFK-------YVVMPMRI 367 >gi|113866033|ref|YP_724522.1| DNA polymerase III subunit beta [Ralstonia eutropha H16] gi|113524809|emb|CAJ91154.1| DNA polymerase III beta subunit [Ralstonia eutropha H16] Length = 371 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 120/393 (30%), Positives = 204/393 (51%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59 Query: 63 VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG + TV+A L DI+R + DG + + + G S F LQ+ Sbjct: 60 -CGVGSDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E E+ S L K+L+ HFAMA ++IRYYLNG+ + E K+ AVA Sbjct: 115 EFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVV--EGKKVMAVA 172 Query: 176 TDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V++ + + +I+PRK + E+ R+L D V+V L+ +++ Sbjct: 173 TDGHRLAYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ S ++V L Sbjct: 293 HMLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I + D N YV+MPMRI Sbjct: 348 SNSSALITVPEDD---------NFKYVVMPMRI 371 >gi|121596426|ref|YP_988322.1| DNA polymerase III subunit beta [Acidovorax sp. JS42] gi|120608506|gb|ABM44246.1| DNA polymerase III, beta subunit [Acidovorax sp. JS42] Length = 368 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/378 (30%), Positives = 202/378 (53%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VLL+ +++ S EI+I D + T Sbjct: 11 VLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 V A L DI++ + +S + N+ +++ + G S F LQ+ P +FP +E + Sbjct: 71 VGARKLIDILKTMPSDQTVSL-ESNQ--SKLILKGGKSRFTLQTLPAEDFPLVQEAASFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + VLK+L+ + FAMA ++IRYYLNGI F E L VATDGHRLA A Sbjct: 128 PAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHRLAFASAQ 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+LS D ++++ + ++ + + +L++G+FP Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +IM+S + + V+L++ L + +N + +A Sbjct: 245 DYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASNNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 ++ +++ Y ++I FN YL++ + N+ D V D L NSS + D Sbjct: 305 VDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMTIPD---- 355 Query: 368 NNKDNKVNAFYVLMPMRI 385 N+ K YV+MPMRI Sbjct: 356 -NEHFK----YVVMPMRI 368 >gi|308095428|ref|ZP_07663276.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308087823|gb|EFO37518.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466] Length = 287 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 92/284 (32%), Positives = 169/284 (59%), Gaps = 7/284 (2%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV-CGSITVSAHLLYDIVRKLQ 82 + T+P+ ++L++ + +L + A+ E+E+ + D GSITV + DI R L Sbjct: 4 RPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEAGSITVPSRKFLDICRGLP 63 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 D A I+F E G V + G S F L + P ++FP+ ++ + L+ + L+ L++ Sbjct: 64 DDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLID 120 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 +T F+MA +++RYYLNG+ F I+ L+ +VATDGHR+AV++ + A A+ IIVPR Sbjct: 121 KTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGHRMAVSQTQLGADFAQK-QIIVPR 177 Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262 K V E+++++ + + V + + S + + + + +L+DG FP+Y+ V+P +K L Sbjct: 178 KGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLI 237 Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 +C LRQA R +I+S+ + + V+++L+ ++ +T +NP+ K Sbjct: 238 ASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQKK 281 >gi|118578451|ref|YP_899701.1| DNA polymerase III subunit beta [Pelobacter propionicus DSM 2379] gi|118501161|gb|ABK97643.1| DNA polymerase III, beta subunit [Pelobacter propionicus DSM 2379] Length = 373 Score = 181 bits (459), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 118/391 (30%), Positives = 213/391 (54%), Gaps = 24/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++ L+ L I+E++ ++P+ +VLL+A + L + A+ E+ + PA Sbjct: 1 MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGMKCIYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A +Y+IV++L + QISF K+N+ V I G +F + EFP Sbjct: 61 ILSPGRITVGAKKIYEIVKELPN-QQISFSAKDNDW---VEIRCGKVHFNIVGLSAEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF--FHINEEDLKLCA-VAT 176 E FE+ S++LK ++E+T +A+ ++ +Y LNG+F IN++D++L VAT Sbjct: 117 YFPEVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVAT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DGHRL++A + S +I+P+K V E+ +I ++ ++ + Sbjct: 177 DGHRLSIASCPFKGNAGQELSKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRGD 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 M +RL+DGEFP+Y VIP SND+ + +NC + +V R++I+SS + + + L +S Sbjct: 237 SYMVMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISESS 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ NP++G A+E ++V Y P + FN +YLL+++ ++ V E+ F+ + + Sbjct: 297 IRISSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTETESV---EMKFKDELAP 353 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + D + V+MPMR+ Sbjct: 354 SIIL-----------PDKSDSFLAVIMPMRL 373 >gi|222109227|ref|YP_002551491.1| DNA polymerase iii subunit beta [Acidovorax ebreus TPSY] gi|221728671|gb|ACM31491.1| DNA polymerase III, beta subunit [Acidovorax ebreus TPSY] Length = 368 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 115/378 (30%), Positives = 202/378 (53%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VLL+ +++ S EI+I D + T Sbjct: 11 VLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 V A L DI++ + +S + N+ +++ + G S F LQ+ P +FP +E + Sbjct: 71 VGARKLIDILKTMPADQTVSL-ESNQ--SKLILKGGKSRFTLQTLPAEDFPLVQEAASFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + VLK+L+ + FAMA ++IRYYLNGI F E L VATDGHRLA A Sbjct: 128 PAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHRLAFASAQ 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+LS D ++++ + ++ + + +L++G+FP Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +IM+S + + V+L++ L + +N + +A Sbjct: 245 DYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASNNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 ++ +++ Y ++I FN YL++ + N+ D V D L NSS + D Sbjct: 305 VDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMTIPD---- 355 Query: 368 NNKDNKVNAFYVLMPMRI 385 N+ K YV+MPMRI Sbjct: 356 -NEHFK----YVVMPMRI 368 >gi|161523182|ref|YP_001578194.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC 17616] gi|189348957|ref|YP_001944585.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC 17616] gi|221201813|ref|ZP_03574850.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M] gi|221207681|ref|ZP_03580689.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2] gi|221214573|ref|ZP_03587543.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1] gi|56798247|dbj|BAD82890.1| DnaN [Burkholderia multivorans] gi|160340611|gb|ABX13697.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC 17616] gi|189332979|dbj|BAG42049.1| DNA polymerase III, beta chain [Burkholderia multivorans ATCC 17616] gi|221165463|gb|EED97939.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1] gi|221172527|gb|EEE04966.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2] gi|221178233|gb|EEE10643.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M] Length = 368 Score = 181 bits (458), Expect = 2e-43, Method: Compositional matrix adjust. Identities = 112/388 (28%), Positives = 203/388 (52%), Gaps = 28/388 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT V Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADFGV- 62 Query: 63 VCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 GS TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EF Sbjct: 63 --GSDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKIDGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ ++ L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDEFK---------YVVMPMRI 368 >gi|94308947|ref|YP_582157.1| DNA polymerase III subunit beta [Cupriavidus metallidurans CH34] gi|93352799|gb|ABF06888.1| DNA polymerase III, beta subunit [Cupriavidus metallidurans CH34] Length = 371 Score = 181 bits (458), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 119/393 (30%), Positives = 204/393 (51%), Gaps = 35/393 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 4 VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59 Query: 63 VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 CG + TV+A L DI+R + DG + + + G S F LQ+ Sbjct: 60 -CGVGSDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114 Query: 117 EFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ E E+ S L K+L+ HFAMA ++IRYYLNG+ ++ + K+ AVA Sbjct: 115 EFPTVAEAAEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVA 172 Query: 176 TDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 TDGHRLA V++ + +I+PRK + E+ R+L D V+V L+ +++ Sbjct: 173 TDGHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDTDDPVQVQLAANQVKFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDT 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ S ++V L Sbjct: 293 HVLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGD 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS I + D N YV+MPMRI Sbjct: 348 SNSSALITVPEDD---------NFKYVVMPMRI 371 >gi|88658616|ref|YP_507795.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str. Arkansas] gi|88600073|gb|ABD45542.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 369 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 123/387 (31%), Positives = 210/387 (54%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V + +L+ L + I+E++++I V V ++A D +++ ++ +I I +I A Sbjct: 1 MNFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+V G + VSA LLYDIV+KL + +I FF + + I G + F+L +FP Sbjct: 61 VNVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHR Sbjct: 119 IENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMS 238 L++ ++ + IIVP+K V EIL+I+S S + + +SLS+ +I + + Sbjct: 177 LSLTKLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILI 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y ++IP S+DK + + L A+DRVS++ +++ +KL S+KL ++ Sbjct: 237 SKVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G A E + V Y+ M I N +YL+E + + + + + +SV Sbjct: 297 AASSDQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCIKGKCLLSFYDAGTSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++N + Y++MPMRI Sbjct: 351 IQ--------EEENIDDFTYIIMPMRI 369 >gi|186474775|ref|YP_001856245.1| DNA polymerase III subunit beta [Burkholderia phymatum STM815] gi|184191234|gb|ACC69199.1| DNA polymerase III, beta subunit [Burkholderia phymatum STM815] Length = 367 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 207/387 (53%), Gaps = 27/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT A Sbjct: 4 VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTR--ADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGESVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQAKDFGANLAVPQKTFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I A+ +I+PRK + E+ R+L D +K+ ++ +++ + + Sbjct: 176 HRLAYSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDVLKIDIAPTQVKFTFGGVELV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP S+ + L++++ R +I++S + + V+ + +L + Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNTFVIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ D + E+ L ++SS Sbjct: 295 STNADQEEAQEELEIPYQGDSIDIGFNVTYLLDVLANLKVDML---EI--SLGDASSSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367 >gi|257455165|ref|ZP_05620403.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60] gi|257447498|gb|EEV22503.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60] Length = 391 Score = 180 bits (457), Expect = 3e-43, Method: Compositional matrix adjust. Identities = 121/410 (29%), Positives = 211/410 (51%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R +L+ + + ++++ + + ++ L D L + AS E+E+ + Sbjct: 1 MQLVISRDLLLQAINLISKAADKRHNMVILGNMKLALTDSQLVMVASDLELELQATLNLP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 C G ITV A+ DIV+ L DG +S N+ + I G S F L + P + Sbjct: 61 ASACKQPGEITVPANKFKDIVKLLPDGLPVSISVGND--NQCLIVCGSSRFKLSTLPAQD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E E V +L L +L+++THFAMA +++RYYL G+ F + E +L V+TD Sbjct: 119 FPLLGEPEQVTPIQLGREDLVDLLDKTHFAMAVQDVRYYLTGMLFEVKER--QLATVSTD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSESRIHL 230 GHRLA+A I + + I+PRKAV E+ R+L ++D+ + +++ + + Sbjct: 177 GHRLALARTVIACDDSVALAAILPRKAVLELQRLLAELKRMLPNQDNKITLNVGREFLQV 236 Query: 231 --------------NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 N ++ + RLIDG+FP+Y+ V+P +K R++ L + RV+ Sbjct: 237 LLPFGEVDSTGQLKNAIMVAFTARLIDGKFPDYRRVMPSLTNKIARISQEQLANVLRRVA 296 Query: 277 IMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 I+S+ + + V S D L + N + +A E + V Y P++I FN YLL++++ Sbjct: 297 ILSNEKSRGVIFDFSGDNNLMVRASNAEQDEASEQLEVKYQGEPLEISFNVAYLLDVLN- 355 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V+ E+ F + +N+SV ++ + DSK+ +V+MPMRI Sbjct: 356 -----VLQGEIDFHMSQANASVLVQ-QVNDSKHE--------FVVMPMRI 391 >gi|153839072|ref|ZP_01991739.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810] gi|149747455|gb|EDM58409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810] Length = 268 Score = 180 bits (456), Expect = 4e-43, Method: Compositional matrix adjust. Identities = 89/285 (31%), Positives = 170/285 (59%), Gaps = 17/285 (5%) Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160 + G S F L + P ++FP+ ++ + L+ + L+ L+++T F+MA +++RYYLNG+ Sbjct: 1 VRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGM 60 Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 F I+ L+ +VATDGHR+AV++ + A A+ IIVPRK V E+++++ + + V Sbjct: 61 LFEIDGTTLR--SVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVV 117 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + S + + + + +L+DG FP+Y+ V+P +K L +C LRQA R +I+S+ Sbjct: 118 LQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSN 177 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + V+++L+ ++ +T +NP+ +A E ++V + P++I FN Y+L++++ + Sbjct: 178 EKFRGVRVNLAGSEMRITANNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRC-- 235 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++V + +N+S I D DS A YV+MP+R+ Sbjct: 236 ---EKVQVSMSDANASALIENADDDS---------AMYVVMPIRL 268 >gi|303256369|ref|ZP_07342383.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47] gi|331001505|ref|ZP_08325123.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis YIT 11859] gi|302859860|gb|EFL82937.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47] gi|329568234|gb|EGG50051.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 391 Score = 179 bits (455), Expect = 5e-43, Method: Compositional matrix adjust. Identities = 116/384 (30%), Positives = 202/384 (52%), Gaps = 20/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASV 61 I ++ +I + + +++RK +PV ++L + + A+ +++I T A Sbjct: 27 INSKKENIFKPIQAVSGVVQRKQPLPVLSNILFVQKGKQVTLVANDLDLQILTVAEIGEE 86 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + S T+SA L DI+ L D +SF K+ G V +S G S F LQ+ EFP Sbjct: 87 NSEMSTTISARKLTDILATLPDTNPLSFSKK---GDHVVLSSGKSKFELQTISAEEFPVI 143 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + ++F ++ K L+ FA A +RY+LNG++ I E+ K+ VATDGHRL Sbjct: 144 TEVDLEHAFTMSCLRFKYLLNMVSFACAVNNVRYFLNGVY--ICAENNKVRGVATDGHRL 201 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A+ +V+ K I+PRK V E++R++ ++V +SE +I + + +L Sbjct: 202 ALCDVEAEKTADKKLDAILPRKTVKELVRLIPDSQDPIEVYISERQIKFKFVGIEILSKL 261 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 ++G +P+YQ VIP N+KE RV L ++ RV+ +++ ++ V+ +L+ L + +N Sbjct: 262 VEGRYPDYQRVIPEHNEKEFRVGRQELLSSLQRVATLTADKLMGVRWNLTPGHLNVAANN 321 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 DM +A + ++V Y+ P++I FN YL+E+++ + +D V L + IR Sbjct: 322 ADMEEAEDEISVEYSGSPIEIGFNVAYLIEVLNVLK-----NDSVRISLGEQKNPALIRM 376 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D D N +V+MPM+I Sbjct: 377 PDND---------NFKFVVMPMKI 391 >gi|68171925|ref|ZP_00545242.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] gi|67998647|gb|EAM85383.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] Length = 375 Score = 179 bits (455), Expect = 6e-43, Method: Compositional matrix adjust. Identities = 123/383 (32%), Positives = 209/383 (54%), Gaps = 20/383 (5%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + +L+ L + I+E++++I V V ++A D +++ ++ +I I +I A V+V Sbjct: 11 VSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHVNVN 70 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G + VSA LLYDIV+KL + +I FF + + I G + F+L +FP + Sbjct: 71 GVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENN 128 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHRL++ Sbjct: 129 ELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLT 186 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLI 242 ++ I IIVP+K V EIL+I+S S + + +SLS+ +I + + ++I Sbjct: 187 KLSQSQNILSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVI 246 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y ++IP S+DK + + L A+DRVS++ +++ +KL S+KL ++ + Sbjct: 247 DGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSAASS 306 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 D G A E + V Y+ M I N +YL+E + + + + + +SV I+ Sbjct: 307 DQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCIKGKCLLSFYDAGTSVLIQ-- 358 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 ++N + Y++MPMRI Sbjct: 359 ------EEENIDDFTYIIMPMRI 375 >gi|319760740|ref|YP_004124677.1| DNA polymerase iii, beta subunit [Alicycliphilus denitrificans BC] gi|330822655|ref|YP_004385958.1| DNA polymerase III subunit beta [Alicycliphilus denitrificans K601] gi|317115301|gb|ADU97789.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans BC] gi|329308027|gb|AEB82442.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans K601] Length = 368 Score = 179 bits (454), Expect = 7e-43, Method: Compositional matrix adjust. Identities = 116/378 (30%), Positives = 197/378 (52%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L+ S EI+I D + T Sbjct: 11 VLAVLQSVSGIVERRHTLPILANVLIRKTGNALQFTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 V A L DI++ + +S EN T++ + G S F LQ+ P +FP +E + Sbjct: 71 VGARKLIDILKTMPADQTVSL--ENS-QTKLILKGGKSRFTLQTLPAEDFPLVQEAASFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + LK L+ + FAMA ++IRYYLNGI F + L L VATDGHRLA A + Sbjct: 128 PAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGILFVAEGKTLSL--VATDGHRLAFASSE 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+LS D ++++ + ++ + +L++G+FP Sbjct: 186 LDMEVPKQ-EVILPRKTVLELQRLLSDADGAIEMRFANNQAKFGFGGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +IM+S + + V+L++ L + N + +A Sbjct: 245 DYNRVIPRNHHNVITLGRAPLLASLQRTAIMTSEKFKGVRLNIEPGSLRVASSNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 ++ +++ Y ++I FN YL++++ N+ D V L NSSV D Sbjct: 305 VDELDIDYGGDSIEIGFNVTYLIDVLANMGQ-----DMVRMELADGNSSVVFGIPD---- 355 Query: 368 NNKDNKVNAFYVLMPMRI 385 N K YV+MPMRI Sbjct: 356 -NTHFK----YVVMPMRI 368 >gi|301165373|emb|CBW24944.1| putative DNA polymerase III, beta chain [Bacteriovorax marinus SJ] Length = 371 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 195/345 (56%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + D+ L +++++N+ P+ + L++ + L I A+ E+ I A Sbjct: 1 MKIRLHTEDLKSALNKVLSVVDKRNSRPILTYTLIETANDQLNISATDLEVSSKVVIKAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G V+A ++DI+++L G +I +++ T + ++ GD ++ L + +FP Sbjct: 61 VDNPGKFCVNAKNIFDILKELP-GTEIELSLDDQSNT-LKLNCGDIHYSLLIYKADDFPH 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V F+L+S L N++ +T +A+ +E R YLNGI+ E D KL AVATDGHR Sbjct: 119 LVFNQDVNKFKLSSEQLANIINKTSYAVLNDETRLYLNGIYLQ--EIDSKLRAVATDGHR 176 Query: 181 LAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES-LS 236 L++ E D+ + + II+PRK + EI +I + DS +++S+ ++ +++N ++ Sbjct: 177 LSLLETDLSENNNETLINGIIIPRKGIFEIKKISETYPDSEIELSVDDTFLYVNAKNEYF 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +SVRLI E+P YQ VIP + + + A+ R+ IMS+ + V+L LS + Sbjct: 237 LSVRLIAREYPKYQAVIPNKTTYTMTTDRNSFFDAIRRIKIMSNEKSNGVRLKLSDQTMT 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +T ++P +G A+E+M V YN M+I FN KYL++ + + E+ Sbjct: 297 LTANHPSLGDAMETMPVDYNGKEMEIGFNAKYLIDTLHSFDEGEI 341 >gi|119896294|ref|YP_931507.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119668707|emb|CAL92620.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 369 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 114/387 (29%), Positives = 202/387 (52%), Gaps = 25/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L L I+E+++T+P+ +VL++ L + A+ EI+I + Sbjct: 4 LNTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKRGDQLTLLATDIEIQIRTTTAGHIG 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 SITV A L DI+R L D I E++ + + G S F LQ+ P +++P Sbjct: 64 GEDSSITVGARKLQDILRALSDSVDIVLTLEDK---RLTVKAGKSRFQLQTLPAADYPRM 120 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + K + + ++MA ++IRYYLNG+ + +L++ VATDGHR Sbjct: 121 NLPDGDAVRFSVPQRAFKRQLAQVSYSMAQQDIRYYLNGLLLIADGSELRM--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D+ + I+PRK V E+ R L+ D +++ L+ ++ S+ + + Sbjct: 179 LAYAAGDLAVPVQARTEAILPRKTVLELARQLADTDDPLEIILAGNQAVFRFGSIELVTK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ VIP ++ + + + L ++ R +I+++ + + V++ L L + Sbjct: 239 LIDGKFPDYERVIPQNHPRMVTFDRQPLLASLQRAAILTNEKFRGVRMVLGEGALKIISS 298 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y++ P+DI FN YLL++++N+SS ++V +R + NSS + Sbjct: 299 NTEQEEAQEELEIDYHDTPLDIGFNVTYLLDVLNNLSS-----EQVEWRFNDGNSSALVT 353 Query: 361 --GKDKDSKNNKDNKVNAFYVLMPMRI 385 G DK YV+MPMRI Sbjct: 354 LPGNDKFK-----------YVVMPMRI 369 >gi|67772421|gb|AAY79411.1| DNA polymerase beta subunit [Ehrlichia chaffeensis] Length = 375 Score = 179 bits (453), Expect = 8e-43, Method: Compositional matrix adjust. Identities = 122/383 (31%), Positives = 209/383 (54%), Gaps = 20/383 (5%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + +L+ L + I+E++++I V V ++A D +++ ++ +I I +I A V+V Sbjct: 11 VSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHVNVN 70 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G + VSA LLYDIV+KL + +I FF + + I G + F+L +FP + Sbjct: 71 GVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENN 128 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHRL++ Sbjct: 129 ELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLT 186 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLI 242 ++ + IIVP+K V EIL+I+S S + + +SLS+ +I + + ++I Sbjct: 187 KLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVI 246 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y ++IP S+DK + + L A+DRVS++ +++ +KL S+KL ++ + Sbjct: 247 DGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSAASS 306 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 D G A E + V Y+ M I N +YL+E + + + + + +SV I+ Sbjct: 307 DQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCIKGKCLLSFYDAGTSVLIQ-- 358 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 ++N + Y++MPMRI Sbjct: 359 ------EEENIDDFTYIIMPMRI 375 >gi|254455931|ref|ZP_05069360.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082933|gb|EDZ60359.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 370 Score = 178 bits (452), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 118/388 (30%), Positives = 216/388 (55%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + D+ + L + +IE+++T+P+ ++LL ++ L I A+ ++ + + Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNILLDVSNSKLTITATDLDLIFVHQL-NN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++V G T ++ ++YDIVRK G +I+ + +++ + S F L +EF Sbjct: 60 IEVLEEGKTTTTSSIMYDIVRKFSSGKKINLSLTD--ISKLQVESEKSIFNLNCISATEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176 P T E F + S L L+ + F+++ +E R+YL+GI+FH E + K L AVAT Sbjct: 118 PLTDENFNENEFVIKSKQLLKLLNKCKFSVSNDETRHYLSGIYFHQTEVEDKNYLTAVAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HR++++++ + +I P II+P+K + ++ +L S D VKVS +S+I + + Sbjct: 178 DSHRMSISKIRLGQKIDFEP-IILPKKTIFQLCSLLDSYDGDVKVSNLKSKIKFELNNSI 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LIDG+FPNY VIP +N K+L ++ +VDRV+ +S + VK +LS D L Sbjct: 237 LISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLNSVDRVASVSLDKKDGVKFNLSKDILD 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++V+N + G E++NV ++ ++I FN +YL+++ + + V E+ F D+ + + Sbjct: 297 LSVNNTNSGDGKETLNVKFDH-DLEISFNSRYLIDVASQLDGERV---EIFFN-DTGSPA 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D DS +V+MPM+ Sbjct: 352 LIKDPGDFDS----------IFVVMPMK 369 >gi|54295985|ref|YP_122354.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris] gi|53749770|emb|CAH11150.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris] Length = 367 Score = 178 bits (451), Expect = 1e-42, Method: Compositional matrix adjust. Identities = 121/390 (31%), Positives = 205/390 (52%), Gaps = 31/390 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + S Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A DI+R L + A S + L V I S F L + P +PS Sbjct: 63 NNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177 Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237 +A++ +AQ AK+ ++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSCNNIAQ-AKL---LIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LI+ FP Y IP DK + ++CT L++A+ R+ I++ + +AV L L +L + Sbjct: 234 LSKLIEARFPPYTKAIPREQDKYIVIDCTTLKRALSRIVILAHEKSKAVLLHLQLGQLTL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN--S 355 +N + +AIE+++ + I N YLL+++ + S ++ RL SN S Sbjct: 294 IANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLSHFSEGQI-------RLSMSNTES 346 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ I D N Y++MPM+I Sbjct: 347 SILIESLVND---------NYQYIIMPMKI 367 >gi|213052697|ref|ZP_03345575.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 274 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 97/280 (34%), Positives = 158/280 (56%), Gaps = 7/280 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 274 >gi|33598883|ref|NP_886526.1| DNA polymerase III subunit beta [Bordetella parapertussis 12822] gi|33575013|emb|CAE39679.1| DNA polymerase iii, beta chain [Bordetella parapertussis] Length = 371 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 210/391 (53%), Gaps = 33/391 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT G Sbjct: 6 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 P + S TV+A L DI++ L D ++ K ++++ S F LQ+ SE Sbjct: 66 PEN----ESTTVAARKLLDILKALPDTGEV---KLGLASNKLSVQSAKSRFALQTLAASE 118 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ + E++ S + +L++L HFAMA ++IRYYLNG+ E ++ AVAT Sbjct: 119 FPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVAT 176 Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DGHRLA E D IA+ +IVPRK V E+ R+L D V + ++ +I Sbjct: 177 DGHRLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ + Sbjct: 234 VELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQ 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ N + +A E +++ Y+ P+D+ FN YLL+++ NI ++ V + D++ Sbjct: 294 MKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENV---QWSVMPDANA 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S++ D+ K YV+MPMRI Sbjct: 351 SALITLSDDEQFK----------YVVMPMRI 371 >gi|71891808|ref|YP_277537.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795914|gb|AAZ40665.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 367 Score = 177 bits (450), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 207/387 (53%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-GAIPA 59 M ++R + + L I+ + +P+ HVLL+ ND L I A+ EIEIT I Sbjct: 1 MNFVIDRKLLYQSLQKVVGILSGRPRMPILTHVLLEVNDNCLCITATDLEIEITVRVILQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS+ V ++I R L + ++IS +++ ++ I G S FYL +F +FP Sbjct: 61 DKYPIGSVIVPGRKFFEICRSLSESSKISIVSKDK---KMIICSGCSKFYLSTFSSLDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++ ++ ++LK ++E T F+M +++RY LNGI F E L++ VATDGH Sbjct: 118 KLEKWGNNLKLVISQAILKKMIELTQFSMGHQDVRYCLNGILFETKEHILRI--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA E+ + + SII PRK V EILR+L+ K+ V + + + + + E+ + + Sbjct: 176 RLASCEITMDLLLPNQSSII-PRKGVIEILRLLNVKEKLVNIQTNSNNLRMETENYTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LID FPN +V + L V C L+QA+ R +I+++ +++ V+ +L +++L +T Sbjct: 235 KLIDAVFPNCHDVFIKRSKNVLEVECGILKQALKRAAILANEKLRIVRFTLITNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSVF 358 N + + E ++V Y+ + I FN YL++++ +V+D + + F L SSV Sbjct: 295 HNFEHEASEEILDVLYSGKSIKISFNVDYLIDVL------QVMDTQFLRFYLTDEISSVQ 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +K A Y++MP+RI Sbjct: 349 IESTEKCH--------GATYIVMPIRI 367 >gi|33591699|ref|NP_879343.1| DNA polymerase III subunit beta [Bordetella pertussis Tohama I] gi|33571342|emb|CAE44819.1| DNA polymerase iii, beta chain [Bordetella pertussis Tohama I] gi|332381118|gb|AEE65965.1| DNA polymerase III subunit beta [Bordetella pertussis CS] Length = 369 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 210/391 (53%), Gaps = 33/391 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT G Sbjct: 4 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 63 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 P + S TV+A L DI++ L D ++ K ++++ S F LQ+ SE Sbjct: 64 PEN----ESTTVAARKLLDILKALPDTGEV---KLGLASNKLSVQSAKSRFALQTLAASE 116 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ + E++ S + +L++L HFAMA ++IRYYLNG+ E ++ AVAT Sbjct: 117 FPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVAT 174 Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DGHRLA E D IA+ +IVPRK V E+ R+L D V + ++ +I Sbjct: 175 DGHRLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGD 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ + Sbjct: 232 VELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ N + +A E +++ Y+ P+D+ FN YLL+++ NI ++ V + D++ Sbjct: 292 MKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENV---QWSVMPDANA 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S++ D+ K YV+MPMRI Sbjct: 349 SALITLPDDEQFK----------YVVMPMRI 369 >gi|160895452|ref|YP_001561034.1| DNA polymerase III subunit beta [Delftia acidovorans SPH-1] gi|160361036|gb|ABX32649.1| DNA polymerase III, beta subunit [Delftia acidovorans SPH-1] Length = 372 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 113/382 (29%), Positives = 197/382 (51%), Gaps = 26/382 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 11 VLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127 V A L DI++ + +S + ++ + G S F LQ+ P +FP +E + Sbjct: 71 VGARKLIDILKTMPGDQTVSLETQQ---AKMVLKGGKSRFTLQTLPAEDFPLVQEAAAFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 SF + VLK+L+ + FAMA ++IRYYLNGI F E +L VATDGHRLA A Sbjct: 128 PSFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFV--AEGKQLSLVATDGHRLAFASSQ 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243 + ++ K +I+PRK V E+ R+LS +++ + ++ + +L++ Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGMEFVTKLVE 244 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L + +N + Sbjct: 245 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLTVEPGTLRVASNNAE 304 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++ + N+S D + D L NSS + + Sbjct: 305 QEEAMDELDIDYGGDTIEIGFNVTYLIDALSNMSQDMIRID-----LQDGNSSALLTIPE 359 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 DS YV+MPMRI Sbjct: 360 NDSFK---------YVVMPMRI 372 >gi|121607000|ref|YP_984329.1| DNA polymerase III subunit beta [Polaromonas naphthalenivorans CJ2] gi|120595969|gb|ABM39408.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans CJ2] Length = 368 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/379 (30%), Positives = 201/379 (53%), Gaps = 26/379 (6%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SITV 69 L +L I+ER++T+P+ +VL++ L++ S EI+I D + TV Sbjct: 12 LGVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTTAELDGDEGDFTTTV 71 Query: 70 SAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 A L D++R + +S +N+L + G S F LQ+ P +FP +E + Sbjct: 72 GARKLIDVLRSMPSDQTVSLESAQNKL----ILKGGKSRFTLQTLPAEDFPLVQEAASFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + VLK L+ + FAMA +IRYYLNGI F E +L VATDGHRLA + Sbjct: 128 PVFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFSSAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+LS K+ ++++ + ++ + E + +L++G+FP Sbjct: 186 LDVEVPKQ-EVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +I++S + + V+L++ L + +N + +A Sbjct: 245 DYNRVIPKNHKNIITLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASNNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 ++ +++ Y+ ++I FN YL++ ++N++ D V L SNSS + D Sbjct: 305 VDELDIDYDGDAIEIGFNVTYLIDALNNMNQ-----DMVKIELADSNSSALLTIPDN--- 356 Query: 368 NNKDNKVNAF-YVLMPMRI 385 AF YV+MPMRI Sbjct: 357 -------AAFKYVVMPMRI 368 >gi|33603962|ref|NP_891522.1| DNA polymerase III subunit beta [Bordetella bronchiseptica RB50] gi|33568938|emb|CAE35352.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica RB50] Length = 371 Score = 177 bits (449), Expect = 2e-42, Method: Compositional matrix adjust. Identities = 115/391 (29%), Positives = 210/391 (53%), Gaps = 33/391 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT G Sbjct: 6 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 P + S TV+A L DI++ L D ++ K ++++ S F LQ+ SE Sbjct: 66 PEN----ESTTVAARKLLDILKALPDTGEV---KLGLASNKLSVQSAKSRFALQTLAASE 118 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ + E++ S + +L++L HFAMA ++IRYYLNG+ E ++ AVAT Sbjct: 119 FPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVAT 176 Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DGHRLA E D IA+ +IVPRK V E+ R+L D V + ++ +I Sbjct: 177 DGHRLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ + Sbjct: 234 VELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQ 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ N + +A E +++ Y+ P+D+ FN YLL+++ NI ++ V + D++ Sbjct: 294 MKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENV---QWSVMPDANA 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S++ D+ K YV+MPMRI Sbjct: 351 SALITLPDDEQFK----------YVVMPMRI 371 >gi|171913560|ref|ZP_02929030.1| DNA polymerase III subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 365 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 115/389 (29%), Positives = 198/389 (50%), Gaps = 30/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + L L ++ + T+P+ +VL++A +G L+ + ++ I+G + A Sbjct: 1 MKFSISKEAFLTALQQVQHVVSTRTTLPILSNVLIKAGNGQLQFVTTDLDVGISGTVAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116 V+ G+ T+ A L I+R+L D +++ E N++H G S F + Sbjct: 61 VEEAGATTLPARKLVSIIRELPSDEVEVTV-------DERNVAHIRSGPSFFKVMGLAAD 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP F+L VLK+ + +T +A++T+E RY LNGI E L + VAT Sbjct: 114 EFPPLPTFSDAREFKLEQRVLKDCLRKTSYAISTDETRYVLNGILCSFKENMLTM--VAT 171 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG RLA+ E ++ + II+P KAV EI R+L + V + + +I ++ Sbjct: 172 DGRRLAMVEQELEFPQSNEVDIIIPTKAVNEIQRLLED-EGEVTLKVGSGQIAFDLGDFF 230 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +LI+G +PNY+ VIP + + ++ L + + R S++ S + +VKL L+ D L Sbjct: 231 LASKLIEGNYPNYRQVIPGEARERIALDREPLLRTLGRTSLLLSDKSNSVKLHLTKDNLE 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + PD+G+A ES+ + Y M I FN ++ + + N+ SDE Sbjct: 291 VVANAPDVGEARESVAINYKGAEMTIAFNPEFFMAPLRNLVSDE---------------- 334 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V++ D+ S + N YVLMPMR+ Sbjct: 335 VYLHLIDEISPGVLRSGTNFLYVLMPMRV 363 >gi|264676138|ref|YP_003276044.1| DNA polymerase III subunit beta [Comamonas testosteroni CNB-2] gi|299530929|ref|ZP_07044343.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44] gi|262206650|gb|ACY30748.1| DNA polymerase III, beta subunit [Comamonas testosteroni CNB-2] gi|298721150|gb|EFI62093.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44] Length = 373 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/382 (29%), Positives = 197/382 (51%), Gaps = 25/382 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 11 VLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDAGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127 + A L DI++ + +S + +++ + G S F LQ+ P +FP +E + Sbjct: 71 IGARKLIDILKTMPGDQTVSLETQQ---SKMILKGGKSRFTLQTLPAEDFPLVQESAAFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHRLA A Sbjct: 128 PAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAWASAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243 + ++ +I+PRK V E+ R+LS +++ + ++ + +L++ Sbjct: 186 LDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGMEFVTKLVE 245 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +IM+S + + V+LS+ L + +N + Sbjct: 246 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLRVASNNAE 305 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++++ N+S D V D L NSS + + Sbjct: 306 QEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMSQDMVKID-----LQDGNSSALVTIPE 360 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 +S YV+MPMRI Sbjct: 361 NESFK---------YVVMPMRI 373 >gi|261854632|ref|YP_003261915.1| DNA polymerase III subunit beta [Halothiobacillus neapolitanus c2] gi|261835101|gb|ACX94868.1| DNA polymerase III, beta subunit [Halothiobacillus neapolitanus c2] Length = 370 Score = 177 bits (449), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 126/391 (32%), Positives = 204/391 (52%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V+R + +E++ T+ + ++LL+ DG L + A+ EI++ ++ Sbjct: 1 MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVDVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV+A L DIV+ A+I+ + + E++I G F L S FP Sbjct: 61 MQAPGATTVNARKLADIVKSASQDAKIAL-TQTDGWLEIDIGTG--VFRLASIEAGSFPQ 117 Query: 121 -TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 T + + + L L+++T F+MA +++RY+LNG+ + ++ AVATDGH Sbjct: 118 MTIDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPG--QMTAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSM 237 RLA A + +IVPRK V E+L+ L +DS +VSL+ +++I L I + Sbjct: 176 RLAYAHLSDERLTENNRQVIVPRKMVSEMLKALD-RDSDDEVSLAFRDNQIELLIGENYL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG++P+Y V+P SN K L V+ T L+Q + R SI+S+ R LS +L + Sbjct: 235 ISKLIDGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N + + E+M+V Y+ + I FN YLL I+ I S +EV L++ SSV Sbjct: 295 ESSNAEHESSKETMSVGYDASDLKISFNISYLLNILAVIES-----EEVCMELEAPESSV 349 Query: 358 FIR---GKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D DSK YVLMPM++ Sbjct: 350 LIKPVMPGDIDSK----------YVLMPMKL 370 >gi|221069746|ref|ZP_03545851.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1] gi|220714769|gb|EED70137.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1] Length = 373 Score = 177 bits (448), Expect = 3e-42, Method: Compositional matrix adjust. Identities = 111/382 (29%), Positives = 196/382 (51%), Gaps = 25/382 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 11 VLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDAGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127 + A L DI++ + +S + ++ + G S F LQ+ P +FP +E + Sbjct: 71 IGARKLIDILKTMPGDQTVSLETQQ---AKMILKGGKSRFTLQTLPAEDFPLVQESAAFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHRLA A Sbjct: 128 PAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAWASAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243 + ++ +I+PRK V E+ R+LS +++ + ++ + +L++ Sbjct: 186 LDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGMEFVTKLVE 245 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +IM+S + + V+LS+ L + +N + Sbjct: 246 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLRVASNNAE 305 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++++ N+S D V D L NSS + + Sbjct: 306 QEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMSQDMVKID-----LQDGNSSALVTIPE 360 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 +S YV+MPMRI Sbjct: 361 NESFK---------YVVMPMRI 373 >gi|81251085|gb|ABB69885.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS18] Length = 369 Score = 177 bits (448), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 127/387 (32%), Positives = 210/387 (54%), Gaps = 25/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + SVD Sbjct: 4 IETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQDSVD 63 Query: 63 --VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 S+TV+A L DI+R L D AQ+ EN L + G S F LQ+ P +FP Sbjct: 64 NDEEHSVTVAAKKLQDILRALPDKAQVVLEMGENRLLAKA----GKSRFNLQTLPAEDFP 119 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E +E + LK+L+ +AMA ++IRYYLNG+ + ED L VATDG Sbjct: 120 KFPESKEAQGKVTVQQKELKHLLSMVQYAMAQQDIRYYLNGL--LLLLEDSYLKVVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A + + A K +I+PRK V E+ ++L+ D + + + ++++ ++ + Sbjct: 178 HRLAFALMTLEAPQEK-KEVILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVVLV 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP K+ +N L Q + R SI+S+ + + V+L L++D L + Sbjct: 237 SKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLRIV 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y+ +DI FN YLL++++N +S+ + F +S++ + Sbjct: 297 CSNSEQEEAQEELELQYDGEALDIGFNITYLLDVLNNTTSEAI---RCAFGDANSSALIT 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G D N YV+MPMRI Sbjct: 354 IPGND-----------NFKYVVMPMRI 369 >gi|322417547|ref|YP_004196770.1| DNA polymerase III subunit beta [Geobacter sp. M18] gi|320123934|gb|ADW11494.1| DNA polymerase III, beta subunit [Geobacter sp. M18] Length = 372 Score = 176 bits (447), Expect = 4e-42, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 213/394 (54%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ L I+E++NT+P+ + LL+ + L I A+ E+ + + P Sbjct: 1 MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLYITATDLEVGMKSSYPTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 V G ITVSA LY+IV+++ D + K+N+ V I+ G + F + EFP Sbjct: 61 VIREGKITVSAKKLYEIVKEMPDEEILFSTKDNDW---VEITCGKARFNIVGLSSEEFPY 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVA 175 KEE ++ + +L +++E+T +A+ +E +Y LNG+F +E+ L VA Sbjct: 118 FPKVKEENFLV---FKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGGNVLKMVA 174 Query: 176 TDGHRLAVAEV----DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 TDGHRL+VA+ +I A+++K II P+K + E+ +++ +D + + ++ + Sbjct: 175 TDGHRLSVAQKAITGNITAELSK--GIIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIK 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +RLIDGEFP+Y VIP +ND+ +++N ++ R+SI+SS + + VK+ ++ Sbjct: 233 KGNTVVVMRLIDGEFPDYTKVIPVANDRIVQINRDKFLHSLKRMSILSSEKFKGVKIDVN 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + ++ NP++G+A E + + Y+ + FN KYL++++ + EV +L Sbjct: 293 PELVIISSSNPELGEAREEIEIDYDGNGISARFNAKYLIDVLSVMEQ-----REVELKLK 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V ++ D + V+MPMR+ Sbjct: 348 DELSPVIMKAADSEE---------FLAVIMPMRL 372 >gi|52840258|ref|YP_094057.1| DNA polymerase III beta chain [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627369|gb|AAU26110.1| DNA polymerase III beta chain [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|307608752|emb|CBW98134.1| DNA polymerase III, beta chain [Legionella pneumophila 130b] Length = 367 Score = 176 bits (447), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 118/390 (30%), Positives = 203/390 (52%), Gaps = 31/390 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + S Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A DI+R L + A S + L V I S F L + P +PS Sbjct: 63 KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177 Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237 +A++ +AQ +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSCNNIAQ----TKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LI+ FP Y IP DK + ++C +L++A+ R+ I++ + +AV L L +L + Sbjct: 234 LSKLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN--S 355 +N + +AIE+++ + I N YLL+++ + S ++ RL SN S Sbjct: 294 IANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFSEGQI-------RLSMSNTES 346 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ I D N Y++MPM+I Sbjct: 347 SILIESLVND---------NYQYIIMPMKI 367 >gi|332524902|ref|ZP_08401088.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2] gi|332108197|gb|EGJ09421.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2] Length = 369 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 115/382 (30%), Positives = 203/382 (53%), Gaps = 29/382 (7%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---- 65 +LE L I+ER++T+P+ +VLL+ N ++E+ S EI++ S ++ G Sbjct: 11 LLEALQSVAGIVERRHTLPILANVLLRKNGPVVELTTSDLEIQVR----TSAELGGDEGH 66 Query: 66 -SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 + TV A L DI+R L ++ + ++ ++ G S F LQS P +FP E Sbjct: 67 FATTVGARKLIDILRALPAEQTVTL---SSAQNKLTLAGGKSRFTLQSLPADDFPLVNEA 123 Query: 125 -EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 ++ +F + L+ L+ + HF+MA +IRYYLNGI F + L L VATDGHRLA+ Sbjct: 124 VDFGPTFSVPQKTLRQLINQVHFSMAVHDIRYYLNGILFIAEGKTLTL--VATDGHRLAL 181 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 A+ + + +I+PRK V E+ R+L +++ +++ + ++ L +L++ Sbjct: 182 AQGTLETDVPNRQEVILPRKTVLELQRLLKDEETPIEMRFAGNQAKFAFSGLEFVTKLVE 241 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ L V L ++ R +I++S + + V+L+L L + N + Sbjct: 242 GKFPDYNRVIPRNHKNALVVGRAALLGSLQRAAILTSEKFKGVRLNLEPGVLRIASSNAE 301 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A E + + Y ++I FN YL++++ N+ E+V E+ D++ S++F + Sbjct: 302 QEEAKEELEIDYAGDTIEIGFNVTYLIDVLANM-QQEMVKIELQ---DTNASALFTVPEQ 357 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 K YV+MPMRI Sbjct: 358 TGFK----------YVVMPMRI 369 >gi|212659801|gb|ACJ36980.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 270 Score = 176 bits (446), Expect = 5e-42, Method: Compositional matrix adjust. Identities = 92/267 (34%), Positives = 154/267 (57%), Gaps = 5/267 (1%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ Sbjct: 8 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIP 67 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 68 ARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERI 124 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 125 IIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQ 182 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ Sbjct: 183 AKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYE 242 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSI 277 VIP D+E++V LR A+ R +I Sbjct: 243 GVIPIGADREVKVAREVLRDALQRAAI 269 >gi|326314825|ref|YP_004232497.1| DNA polymerase III subunit beta [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371661|gb|ADX43930.1| DNA polymerase III, beta subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 372 Score = 176 bits (446), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 114/382 (29%), Positives = 195/382 (51%), Gaps = 26/382 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 11 VLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127 V A L DI++ + +S + +++ + G S F LQS P +FP +E + Sbjct: 71 VGARKLIDILKTMPADQTVSLESQQ---SKLVLKGGKSRFTLQSLPAEDFPLVQESAAFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHRLA A Sbjct: 128 PVFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAFASAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243 + ++ K +I+PRK V E+ R+LS +++ + ++ + +L++ Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGMEFVTKLVE 244 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L + +N + Sbjct: 245 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLRVASNNAE 304 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++ + N+ D V D L NSS + D Sbjct: 305 QEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVKVD-----LSDGNSSALMTIPD 359 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 D N YV+MPMRI Sbjct: 360 ND---------NFKYVVMPMRI 372 >gi|319760165|ref|YP_004124103.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str. BVAF] gi|318038879|gb|ADV33429.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str. BVAF] Length = 369 Score = 176 bits (445), Expect = 6e-42, Method: Compositional matrix adjust. Identities = 129/387 (33%), Positives = 208/387 (53%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M VER + +L ++ + +P+ H+LL+ N+ L + + E+EI + Sbjct: 1 MTFCVERQSLYPILQKIISVVSNRPRLPILKHILLEINNNCLILIVTNLEVEIIAHVFLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V S+TVS LY+I R L A+I EN ++ ++ G S+F L + P S+FP Sbjct: 61 KRYVFRSVTVSGIKLYEIFRNLSACAKIFIKLEN---NKLLVNSGCSSFVLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVL--KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + + + F + S L K ++E T FAM + R+YLNGIFF I ED + VATD Sbjct: 118 NVETLKVDCEFNVIISQLMFKKIIELTQFAMGYRDARHYLNGIFFEI--EDKVVRVVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA+ E+ ++ SII+PR+ + EILR+L+ + VK+ + ++RI + I++ + Sbjct: 176 GHRLAMCEIT-ADTLSSSHSIIIPRQGIVEILRLLNYTKNLVKIKIYDNRICVKIDNYIV 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LID FPNY+ V+ + V+ L+QA+ RVSI+S+ +++ V +L D+L + Sbjct: 235 HSKLIDSVFPNYKRVLTNNLKLFFEVDRIILKQALKRVSILSNEKLRVVHFNLMHDQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +N + E + + Y+ + I FN Y+L+II+ I S + F L SSV Sbjct: 295 TANNFKQETSEEILEILYDNENIGISFNVDYILDIINVIDS-----KTLKFFLTDPVSSV 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I G K + A YV+MP+R Sbjct: 350 KIEGIPKFYE--------ATYVVMPVR 368 >gi|120608716|ref|YP_968394.1| DNA polymerase III subunit beta [Acidovorax citrulli AAC00-1] gi|120587180|gb|ABM30620.1| DNA polymerase III, beta subunit [Acidovorax citrulli AAC00-1] Length = 372 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 113/382 (29%), Positives = 196/382 (51%), Gaps = 26/382 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 11 VLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127 V A L DI++ + +S + +++ + G S F LQS P +FP +E + Sbjct: 71 VGARKLIDILKTMPADQTVSLESQQ---SKLVLKGGKSRFTLQSLPAEDFPLVQESAAFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHRLA A Sbjct: 128 PAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAFASAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243 + ++ K +I+PRK V E+ R+LS +++ + ++ + +L++ Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGMEFVTKLVE 244 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L + +N + Sbjct: 245 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLRVASNNAE 304 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++ + N+ D V D L NSS + + Sbjct: 305 QEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVRVD-----LSDGNSSALMTIPE 359 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 D N YV+MPMRI Sbjct: 360 ND---------NFKYVVMPMRI 372 >gi|254468927|ref|ZP_05082333.1| DNA polymerase III, beta subunit [beta proteobacterium KB13] gi|207087737|gb|EDZ65020.1| DNA polymerase III, beta subunit [beta proteobacterium KB13] Length = 316 Score = 176 bits (445), Expect = 8e-42, Method: Compositional matrix adjust. Identities = 107/330 (32%), Positives = 181/330 (54%), Gaps = 21/330 (6%) Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 I ++ IT+SA L+DI R L + +++ F + NE + VN+ G S F LQ+ P Sbjct: 7 IDTKIETDFEITISARKLFDITRALPENSELDF-QINE--SRVNVKAGKSKFNLQTLPSK 63 Query: 117 EFPSTKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P K+ + S +L+ + LK L+++ FAMA ++IRYYLNG+ F I + KL V Sbjct: 64 DYPLLKKNDSESVSVKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQ--KLNIVG 121 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRL+ + K +I+PRK + E++++L D V++ + ++ + Sbjct: 122 TDGHRLSFTSTKLDDSYEK-KEVIIPRKTIMELIKLLDDSDEIVELEILNQQVTFKFGDI 180 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++IDG+FP+Y VIP + ++ L A+ R SI+S+ + + ++L LS + + Sbjct: 181 FIITKVIDGKFPDYNRVIPVGYENGFLIDRQMLLNAMQRASILSNEKYRGIRLVLSENNM 240 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N + +A E + + YN+ +DI FN YL+++++NI D++ F SNS Sbjct: 241 QLITTNSEQEEAQEDIEILYNKEAIDIGFNVTYLIDVLNNIQF-----DQLSFTFKDSNS 295 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + NN D K YV+MPMRI Sbjct: 296 SCLVT-----IPNNDDYK----YVVMPMRI 316 >gi|54292966|ref|YP_125381.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens] gi|53752798|emb|CAH14232.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens] Length = 367 Score = 175 bits (444), Expect = 9e-42, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 201/388 (51%), Gaps = 27/388 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + S Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A DI+R L + A S + L V I S F L + P +PS Sbjct: 63 KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A++ K +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSCNNITQK--KLLIPKKGVQELLRLLNCINDEQVLLTAGKSHIKLITNQFVFLS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP DK + ++C +L++A+ R+ I++ + +AV L L +L + Sbjct: 236 KLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN--SSV 357 +N + +AIE+++ + I N YLL+++ + S ++ RL SN SS+ Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFSEGQI-------RLSMSNTESSI 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D N Y++MPM+I Sbjct: 349 LIESLIND---------NYQYIIMPMKI 367 >gi|212659819|gb|ACJ36984.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 264 Score = 175 bits (444), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/269 (33%), Positives = 154/269 (57%), Gaps = 5/269 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 + L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT Sbjct: 1 NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 + A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 61 IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+ Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 Y+ VIP D+E++V LR A+ R + Sbjct: 236 YEGVIPIGADREVKVAREVLRDALQRAQV 264 >gi|171056694|ref|YP_001789043.1| DNA polymerase III subunit beta [Leptothrix cholodnii SP-6] gi|170774139|gb|ACB32278.1| DNA polymerase III, beta subunit [Leptothrix cholodnii SP-6] Length = 381 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 117/394 (29%), Positives = 203/394 (51%), Gaps = 35/394 (8%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG- 65 + +L L I+ER++T+P+ +VL++ + G E+ S EI++ A D Sbjct: 8 QEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGDESAF 67 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124 S TV A L DI+R L ++ ++ + G S F LQ+ P +FP +E Sbjct: 68 STTVGARKLIDILRMLPSDQIVTLTAAQ---NKLTLQGGKSRFTLQTLPADDFPLVQEAA 124 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 ++ +F + LK+L+++ HFAMA +IRYYLNGI F + L L VATDGHRLA+A Sbjct: 125 DFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTL--VATDGHRLALA 182 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE------- 233 + + A+I K +I+PRK V E+ R+L +SK+++ + E RI + Sbjct: 183 QATLEAEIPKQ-EVILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQAKFS 241 Query: 234 --SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + +L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+++ Sbjct: 242 FGGMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRVNFE 301 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + N + +A E + + Y ++I FN YL++++ N++ +D V L Sbjct: 302 PGTLRIASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANVN-----EDMVTLSLQ 356 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++SS I ++ YV+MPMRI Sbjct: 357 DASSSALITVPERSGFK---------YVVMPMRI 381 >gi|89898824|ref|YP_521295.1| DNA polymerase III subunit beta [Rhodoferax ferrireducens T118] gi|89343561|gb|ABD67764.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118] Length = 367 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 109/377 (28%), Positives = 191/377 (50%), Gaps = 21/377 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69 +L +L I+ER++T+P+ +VL++ L++ S EI+I D TV Sbjct: 11 VLSVLQSVAGIVERRHTLPILANVLIRKTGTSLQLTTSDLEIQIRTTAELDGDTGDFTTV 70 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYVY 128 A L DI+R + +S ++ + G S F LQ+ +FP +E + Sbjct: 71 GARKLIDILRTMPADQTVSL---ESSAAKLILKGGKSRFTLQTMAAEDFPLVQEAASFGP 127 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 F + LK+L+ + FAMA +IRYYLNGI F E +L VATDGHRLA A + Sbjct: 128 VFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGSQLSLVATDGHRLAFASATL 185 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 ++ K +I+PRK V E+ R+LS ++++ + ++ + + + +L++G+FP+ Sbjct: 186 DVEVPKQ-EVILPRKTVIELQRLLSDTQGAIEMQFANNQAKFSFDGMEFVTKLVEGKFPD 244 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI 308 Y VIP ++ + + + L + R +I++S + + V+L++ L + +N + +A+ Sbjct: 245 YNRVIPKNHQNSITLGRSALLATLQRTAILTSEKFKGVRLNIDPGTLRVASNNAEQEEAV 304 Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368 + +++ Y ++I FN YL++ + N+S D V L NSS D + Sbjct: 305 DELDIDYGGDSIEIGFNVTYLIDALANMSQ-----DMVRLELSDGNSSALFTIPDNATFK 359 Query: 369 NKDNKVNAFYVLMPMRI 385 YV+MPMRI Sbjct: 360 ---------YVVMPMRI 367 >gi|301631933|ref|XP_002945046.1| PREDICTED: DNA polymerase III subunit beta-like [Xenopus (Silurana) tropicalis] Length = 554 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 197/378 (52%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ ++L++ L+ S EI+I DV + T Sbjct: 197 VLAVLQSVSGIVERRHTLPILANMLIRKTGNALQFTTSDQEIQIRTTAELGGDVGDFATT 256 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 V L DI++ + +S +++ + G S F LQ+ +FP +E + Sbjct: 257 VGVRKLIDILKTMPAEQMVSLESSQ---SKLILKGGKSRFTLQTLAAEDFPLVQESPAFG 313 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + VLK L+ + FAMA ++IRY+LNGI F + L L VATDGHRLA A + Sbjct: 314 PVFSVPQKVLKGLLNQVSFAMAVQDIRYFLNGILFVAEGKTLSL--VATDGHRLAFASSE 371 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+LS D ++++ + ++ + +L++G+FP Sbjct: 372 LDVEVPKQ-GVILPRKTVLELQRLLSDADGAIEMQFANNQAKFCFGGMEFVTKLVEGKFP 430 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +IM+S + +AV+L++ L + N + +A Sbjct: 431 DYHRVIPNNHHNSITLGRAPLLTSLQRTAIMTSEKFKAVRLNIEPGTLRVASTNAEQEEA 490 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 ++ +++ Y +++ FN YLL+++ N+ + V D L +NSS + + DS Sbjct: 491 VDELDIDYGGNSIEVVFNVTYLLDVLANMGQEMVKID-----LADNNSSALVTIPENDSF 545 Query: 368 NNKDNKVNAFYVLMPMRI 385 YV+MPMRI Sbjct: 546 K---------YVVMPMRI 554 >gi|212659788|gb|ACJ36978.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 263 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 153/261 (58%), Gaps = 5/261 (1%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 3 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 62 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 63 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 119 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ II Sbjct: 120 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 177 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP D+ Sbjct: 178 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 237 Query: 260 ELRVNCTNLRQAVDRVSIMSS 280 E++V LR A+ R +I+S+ Sbjct: 238 EVKVAREVLRDALQRAAILSN 258 >gi|212659784|gb|ACJ36976.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 265 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 153/261 (58%), Gaps = 5/261 (1%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 64 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ II Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 178 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP D+ Sbjct: 179 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 238 Query: 260 ELRVNCTNLRQAVDRVSIMSS 280 E++V LR A+ R +I+S+ Sbjct: 239 EVKVAREVLRDALQRAAILSN 259 >gi|212659810|gb|ACJ36982.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 264 Score = 175 bits (443), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 153/267 (57%), Gaps = 5/267 (1%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ Sbjct: 2 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIP 61 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 62 ARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERI 118 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 119 IIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQ 176 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ Sbjct: 177 AKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYE 236 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSI 277 VIP D+E++V LR A+ R + Sbjct: 237 GVIPIGADREVKVAREVLRDALQRAQL 263 >gi|124265195|ref|YP_001019199.1| DNA polymerase III subunit beta [Methylibium petroleiphilum PM1] gi|124257970|gb|ABM92964.1| DNA polymerase III, beta subunit [Methylibium petroleiphilum PM1] Length = 368 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 111/378 (29%), Positives = 194/378 (51%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 L L I+ER++T+PV +VL++ +E S EI++ D S T Sbjct: 11 FLGALQAVAGIVERRHTLPVLANVLMRKTGNAIEFTTSDLEIQVRTQAEFDGDAGNFSTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 V A L DI+R L ++ + ++ ++ G S F LQ+ P +FP +E ++ Sbjct: 71 VGARKLIDILRTLPADQNVTL---SSAQNKLTLTGGKSRFTLQTLPAEDFPLVQEAADFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +F + LK L+ + HFAMA +IRYYLNGI F + L L VATDGHRLA+A+ Sbjct: 128 PAFSVPQKSLKALIAQVHFAMAVHDIRYYLNGILFVAEGKSLTL--VATDGHRLALAQAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+L +D+++++ + ++ + +L++G+FP Sbjct: 186 LDVEMPKQ-EVILPRKTVLELQRLLKDEDTAIEMRFAGNQAKFAFSGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +I++S + + V+L+ L + N + +A Sbjct: 245 DYNRVIPKNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRLNFDPGTLRIASSNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 E + + Y ++I FN YL++++ N+ + V L SNSS + ++ Sbjct: 305 KEELEIDYGGDAIEIGFNVTYLMDVLANMG-----QEMVTLSLQDSNSSALVTVPEQGGF 359 Query: 368 NNKDNKVNAFYVLMPMRI 385 YV+MPMRI Sbjct: 360 K---------YVVMPMRI 368 >gi|6606554|gb|AAF19206.1|AF213931_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 174 bits (442), Expect = 1e-41, Method: Compositional matrix adjust. Identities = 112/385 (29%), Positives = 217/385 (56%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R+I + +T+P+ ++L+ N+G++ + A EIE+ I S Sbjct: 1 MKFNIINKIFTQHLKKVNRLISKNSTLPILENILITVNNGIISLTAKNLEIELISNIEIS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I Q+ ++ S K N +++I +SN+ L + P FP Sbjct: 61 KTHTPGSITVSGQKLLNIC---QNSSESSEIKINLNKDKMHIISDNSNYILTTLPSDNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F ++S +LK ++E+T F+M +++RYYLNGI N+ L AVATDG+ Sbjct: 118 NHNNFHHISEFFISSEILKKMIEKTQFSMGKQDVRYYLNGILLEKNKT--ALYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +A+ + + + S I+PR+ + E+ ++L+ K + V + ++ I +NIE L +V Sbjct: 176 RLGIAKTFLNENVC-IFSAIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRINIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++V+ + + +N L+Q++ RV+++S V++ ++++K ++ Sbjct: 235 QLIEGEYPDYKSVLLRKKNHPIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVSS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N KA +S + Y ++I N Y++E+++ I+S+ + +F L+ SN+S+ I Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSNNI----FIF-LNESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +S + YV+M +R Sbjct: 350 ESEEDNS---------SLYVIMLLR 365 >gi|212659799|gb|ACJ36979.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 263 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 91/267 (34%), Positives = 153/267 (57%), Gaps = 5/267 (1%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ Sbjct: 2 LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIP 61 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 62 ARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERI 118 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 119 IIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQ 176 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ Sbjct: 177 AKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYE 236 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSI 277 VIP D+E++V LR A+ R + Sbjct: 237 GVIPIGADREVKVAREVLRDALQRAQL 263 >gi|313199779|ref|YP_004038437.1| DNA polymerase III subunit beta [Methylovorus sp. MP688] gi|312439095|gb|ADQ83201.1| DNA polymerase III, beta subunit [Methylovorus sp. MP688] Length = 341 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/361 (29%), Positives = 194/361 (53%), Gaps = 22/361 (6%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 +P+ ++LL+A D + + A+ E++I+ A+ V S T+SA L DI R L + A+ Sbjct: 1 MPILSNLLLEAKDEKIVLTATDLEMQISLALQTPVGGELSTTISAKKLLDICRSLPENAE 60 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPESEFP-STKEEEYVYSF-ELASSVLKNLVERT 144 I+ + + + G S F LQ+ P +++P TK Y+ + LK L ++ Sbjct: 61 ITMATAE---SRIQVKTGKSRFNLQTLPAADYPVMTKATGTTYTVVTIDQKSLKRLFKQV 117 Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FAMA ++IRYYLNG+ F +N +L V TDGHRL+ ++ AQ + +I+PRK Sbjct: 118 EFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDGHRLSFTSTEL-AQSYEKQELILPRKT 174 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 V E++++L + V + ++ +++ + + + ++IDG+FP+Y VIP + V+ Sbjct: 175 VIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLISKVIDGKFPDYTRVIPVGHKNSFNVD 234 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 + A+ R SI+S+ + + +++ L SD L + N + +A E + + Y +DI F Sbjct: 235 RMTILLAMQRASILSNEKYRGIRMVLGSDSLRLISTNSEQEEAEEELEIAYAGDSLDIGF 294 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N Y++++++N++ D V F +NSS + D ++ YV+MPMR Sbjct: 295 NVTYMIDVLNNVNC-----DSVTFSFADANSSCLVTVADDETYK---------YVVMPMR 340 Query: 385 I 385 I Sbjct: 341 I 341 >gi|163854306|ref|YP_001628604.1| DNA polymerase III subunit beta [Bordetella petrii DSM 12804] gi|163258034|emb|CAP40333.1| DNA polymerase III, beta chain [Bordetella petrii] Length = 369 Score = 174 bits (442), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 110/385 (28%), Positives = 202/385 (52%), Gaps = 21/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT V Sbjct: 4 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 63 Query: 63 VCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 S TV+A L DI++ L D ++ N ++++ S F LQ+ SEFP+ Sbjct: 64 QDNESTTVAARKLLDILKALPDTGEVKLGLANN---KLSVQSAKSRFALQTLAASEFPTV 120 Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E++ S L L++L+ HFAMA ++IRYYLNG+ ++ AVATDGHR Sbjct: 121 AQPEKWDVSLSLPQRTLRHLLNMVHFAMAQQDIRYYLNGMLLVFEAGCVR--AVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA I + +IVPRK V E+ R+L D V V ++ +I + + + Sbjct: 179 LAHCAT-AADGITERHEVIVPRKTVLEMQRLLEDSDEPVAVDVAPGQIRFRFGDVELVSK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ +++ ++ Sbjct: 238 LVEGKFPDFTRVIPTNYTRQFVVSREALQGSLQRAAILTTDKFKGVRLQLAQNQMKISSS 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E +++ Y P+D+ FN YLL+++ N+ ++ + + +N+S + Sbjct: 298 NAEQEEAQEELDIDYGHEPLDVGFNVSYLLDVLANVKTENIQWSV----MPDANASALLT 353 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D D YV+MPMRI Sbjct: 354 LPDDDQFK---------YVVMPMRI 369 >gi|212659807|gb|ACJ36981.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 262 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 90/264 (34%), Positives = 151/264 (57%), Gaps = 5/264 (1%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A Sbjct: 4 LAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPARK 63 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A Sbjct: 64 IYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERIIIA 120 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 121 EVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKD 178 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VI Sbjct: 179 LKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVI 238 Query: 254 PCSNDKELRVNCTNLRQAVDRVSI 277 P D+E++V LR A+ R + Sbjct: 239 PIGADREVKVAREVLRDALQRAQL 262 >gi|332531210|ref|ZP_08407123.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624] gi|332039317|gb|EGI75730.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624] Length = 368 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 112/379 (29%), Positives = 198/379 (52%), Gaps = 24/379 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +V+L+ + +++ S EI+I D + T Sbjct: 11 VLSVLQSVAGIVERRHTLPILANVMLRRSGNAVQLTTSDLEIQIRTVAEFEGDSGNFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EY 126 V A L DI+R L ++ +N+L + G S F LQS P +FP +E + Sbjct: 71 VGARKLIDILRTLPSDQTVTLESSQNKL----VLKGGKSKFTLQSLPAEDFPLVQEAANF 126 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 F + LK L+ + F+MA +IRYYLNGI F + L L VATDGHRLA A Sbjct: 127 GPKFSVPQKTLKELLGQVSFSMAVHDIRYYLNGILFVAEGQQLSL--VATDGHRLAFASA 184 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 + ++ K +I+PRK V E+ R+LS + ++++ + ++ + + +L++G+F Sbjct: 185 TLDVEVPKQ-EVILPRKTVLELQRLLSDNEGAIEMQFAGNQAKFSFGGMEFVTKLVEGKF 243 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P+Y VIP ++ + + L ++ R +I++S + + V+L++ L + N + + Sbjct: 244 PDYNRVIPKNHKNIIVLGRQPLLASLQRAAILTSDKFKGVRLNIEPGTLRIASTNAEQEE 303 Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 A++ +++ Y+ ++I FN YL+E++ N++ + V L SNSS + D Sbjct: 304 AVDELDIDYSGDSIEIGFNVTYLIEVLGNMT-----QEMVRVELSDSNSSALVTIPD--- 355 Query: 367 KNNKDNKVNAFYVLMPMRI 385 N YV+MPMRI Sbjct: 356 ------NANFKYVVMPMRI 368 >gi|81251081|gb|ABB69882.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS16] Length = 369 Score = 174 bits (441), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 126/387 (32%), Positives = 209/387 (54%), Gaps = 25/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + SVD Sbjct: 4 IETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQDSVD 63 Query: 63 --VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 S+TV+A L DI+R L D AQ+ EN L + G S F LQ+ P +FP Sbjct: 64 NDEEHSVTVAAKKLQDILRALPDKAQVVLEMGENRLLAKA----GKSRFNLQTLPAEDFP 119 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E +E + LK+L+ +A A ++IRYYLNG+ + ED L VATDG Sbjct: 120 KFPESKEAQGKVTVQQKELKHLLSMVQYATAQQDIRYYLNGL--LLLLEDSYLKVVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A + + A K +I+PRK V E+ ++L+ D + + + ++++ ++ + Sbjct: 178 HRLAFALMTLEAPQEK-KEVILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVVLV 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP K+ +N L Q + R SI+S+ + + V+L L++D L + Sbjct: 237 SKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLRIV 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y+ +DI FN YLL++++N +S+ + F +S++ + Sbjct: 297 CSNSEREEAQEELELQYDGEALDIGFNITYLLDVLNNTTSEAI---RCAFGDANSSALIT 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G D N YV+MPMRI Sbjct: 354 IPGND-----------NFKYVVMPMRI 369 >gi|6606560|gb|AAF19209.1|AF213934_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 108/385 (28%), Positives = 218/385 (56%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + L R+I + NT+P+ ++L+ N+ ++ + A+ E E+ +I S Sbjct: 1 MKFNIKNKIFTQHLKKINRLISKNNTLPILENILITVNNDIVSLTATNLETELISSIKTS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I Q+ +++S K + +++I DSN+ L + P FP Sbjct: 61 NTHTPGSITVSGQKLLNIX---QNSSELSEIKISLNEDKMHIVSDDSNYILTTLPSDNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F ++S VLK ++E+T F+M +++RYYLNGI N++ L AVATDG+ Sbjct: 118 NHNNFHHISEFFISSDVLKKMIEKTQFSMGKQDVRYYLNGILLEKNKKSL--YAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + + + S+I+PR+ + E+ ++L+ K + V + ++ I ++IE L +V Sbjct: 176 RLGISKTALKENVC-IFSVIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRIHIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++++ + +N L+Q++ RVS++S +++ ++++K + Sbjct: 235 QLIEGEYPDYKSILLRKKKHPIVLNNKILKQSLLRVSVLSXKNFCGIEIHITNNKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N KA +S + Y ++I N Y++E+++ I+S + +F ++ SN+S+ I Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSKNI----FIF-VNESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +S + YV+M +R Sbjct: 350 ESEEDNS---------SLYVIMLLR 365 >gi|148358141|ref|YP_001249348.1| DNA polymerase III subunit beta [Legionella pneumophila str. Corby] gi|296105499|ref|YP_003617199.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99 Alcoy] gi|148279914|gb|ABQ54002.1| DNA polymerase III beta chain [Legionella pneumophila str. Corby] gi|295647400|gb|ADG23247.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99 Alcoy] Length = 367 Score = 174 bits (440), Expect = 2e-41, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 200/388 (51%), Gaps = 27/388 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + S Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A DI+R L + S + L V I S F L + P +PS Sbjct: 63 NNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177 Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237 +A++ + Q +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSCNNITQT----KLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LI+ FP Y IP DK + ++C L++A+ R+ I++ + +AV L L +L + Sbjct: 234 LSKLIEARFPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + +AIE+++ + I N YLL+++ + S D ++ + ++ SS+ Sbjct: 294 IANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLAHFS-----DGQIRLSMSNTESSI 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D N Y++MPM+I Sbjct: 349 LIESLVND---------NYQYIIMPMKI 367 >gi|302035396|ref|YP_003795718.1| DNA polymerase III subunit beta [Candidatus Nitrospira defluvii] gi|300603460|emb|CBK39790.1| DNA polymerase III, beta subunit [Candidatus Nitrospira defluvii] Length = 376 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 18/369 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R ++L L ++E++NT+P+ ++LL+A EI A+ EI + G A+ Sbjct: 1 MKVRIGREELLTGLQRVQGVVEKRNTMPILSNILLEAKHDGAEIVATDLEIGMRGLYKAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G +T+SA LY+I+++L G +N T I G S F + P ++P+ Sbjct: 61 VLEAGGVTISARKLYEIIKELPSGEIELTSGDNNWTT---IQSGKSQFKVVGLPSGDYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA---VATD 177 E LA + L L+ +T FA + RY LNG+ + + K V TD Sbjct: 118 LPSIEREGLTPLAGAGLLELIRKTLFAAGDNDARYILNGLLVSLTTTEKKTTLLRLVGTD 177 Query: 178 GHRLAVAEVDIVAQIAKMPS----IIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNI 232 GHRLAVAE ++ AK P+ I+P+KA E+ R+L D + +++ + Sbjct: 178 GHRLAVAEREVGTPNAKQPAQDIKAIIPKKAAQEMRRLLEEGGDEEPLIGFTKNLMIFRK 237 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 L ++ RL++G +PNYQ V+P + K + VN L A+ RVS++S + AVK+S + Sbjct: 238 SGLLLTSRLMEGNYPNYQQVVPKESGKRIAVNRGLLESALRRVSVLSKDKANAVKVSFAP 297 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLD 351 + + NPD G+A E + Y + FN +YLL+ + V+D E V ++D Sbjct: 298 GGMTLFSSNPDYGEATEELVARYEGEALHTGFNARYLLDALS------VMDGESVSLQMD 351 Query: 352 SSNSSVFIR 360 ++ S I+ Sbjct: 352 TALSPCLIQ 360 >gi|212659814|gb|ACJ36983.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 265 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 90/261 (34%), Positives = 153/261 (58%), Gaps = 5/261 (1%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 5 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPARKIYEIVR 64 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 65 ALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 121 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ II Sbjct: 122 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 179 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP D+ Sbjct: 180 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 239 Query: 260 ELRVNCTNLRQAVDRVSIMSS 280 E++V LR A+ R +I+S+ Sbjct: 240 EVKVAREVLRDALQRAAILSN 260 >gi|239813021|ref|YP_002941931.1| DNA polymerase III, subunit beta [Variovorax paradoxus S110] gi|239799598|gb|ACS16665.1| DNA polymerase III, beta subunit [Variovorax paradoxus S110] Length = 368 Score = 174 bits (440), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 195/378 (51%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L L I+ER++T+P+ +VL++ G L++ S EI+I D + T Sbjct: 11 VLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGDEGNFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 + A L DI+R + +S +++ + G S F LQS P +FP +E + Sbjct: 71 IGARKLIDILRTMPADQTVSL---ESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAANFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + LK+L+ + FAMA +IRYYLNGI F E +L VATDGHRLA + Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFSSAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ + +I+PRK V E+ R+LS + ++++ + ++ + + +L++G+FP Sbjct: 186 LDVEVPRQ-EVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +I++S + + V+L++ L + +N + +A Sbjct: 245 DYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 + +++ Y ++I FN YL++ + N+ D V D L SNSS + + S Sbjct: 305 QDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLD-----LADSNSSALLTIPENASF 359 Query: 368 NNKDNKVNAFYVLMPMRI 385 YV+MPMRI Sbjct: 360 K---------YVVMPMRI 368 >gi|238025686|ref|YP_002909917.1| DNA polymerase III subunit beta [Burkholderia glumae BGR1] gi|237874880|gb|ACR27213.1| DNA polymerase III, beta subunit [Burkholderia glumae BGR1] Length = 368 Score = 173 bits (439), Expect = 3e-41, Method: Compositional matrix adjust. Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L L I+ER++T+P+ ++L+ + ++ E++IT A Sbjct: 4 VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQIT--TRADFG 61 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + TV+A L DI+R + DG Q++ ++ + + G S F LQ+ EFP Sbjct: 62 VGGEQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATDG Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I +IVPRK + E+ R+L D V + +++++ + + Sbjct: 176 HRLAYSSMKIDGGTFPRQEVIVPRKTILELQRLLEDIDDVVNIDIAQTQAKFTFGQVELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIM 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A E + + Y +DI FN YLL+++ N+ + + L ++SS Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----ENIQVSLGDASSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 ITIPEIDEFK---------YVVMPMRI 368 >gi|317401671|gb|EFV82296.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54] Length = 371 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 27/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT V Sbjct: 6 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65 Query: 63 VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S TV+A L DI++ L D + N+L ++ S F LQ+ SEFP+ Sbjct: 66 HDNESTTVAARKLLDILKALPDTGDVRLALASNKL----SVQSAKSRFALQTLAASEFPT 121 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E++ S + L++L HFAMA ++IRYYLNG+ E ++ AVATDGH Sbjct: 122 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 179 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA E D I++ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 180 RLAHCSTEAD---GISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + V L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y P+D+ FN YLL+++ N+ D + + D++ S++ Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEPLDVGFNVGYLLDVLSNVKVDNI---QWSVMPDANASAL 353 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D K YV+MPMRI Sbjct: 354 ITLPEDDQFK----------YVVMPMRI 371 >gi|56477035|ref|YP_158624.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1] gi|56313078|emb|CAI07723.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1] Length = 367 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 115/385 (29%), Positives = 202/385 (52%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +T R +L L I+E+++T+P+ +VL++ + L + A+ EI+I + Sbjct: 4 LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHGDQLTLLATDIEIQIRTTTAGHIG 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 SITV+A L DI+R + +G + L + G S F LQ+ P +++P Sbjct: 64 GEDASITVAARKLQDILRAVPEGDVTVMLDDKRL----TVKAGRSRFALQTLPAADYPRM 119 Query: 122 KEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F ++ K + + +AMA ++IRYYLNG+ + +L++ VATDGHR Sbjct: 120 NPPDGDATHFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRM--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A + + +I+PRK V E+ R L+ + ++V L+ +++ + + + Sbjct: 178 LAFASNPLAGDVPHT-EVILPRKTVMELARQLADSEDPLEVILAGNQVVFRFGPIELVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ VIP ++ K L L + RV+I+++ + + V+L L L + Sbjct: 237 LIDGKFPDYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKIVST 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A+E + V Y++ P+DI FN YLL++++N++S D + +R + NSS + Sbjct: 297 NAEQEEALEELEVDYHDDPLDIGFNVTYLLDVLNNVTS-----DTIEWRFNDGNSSALV- 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N K YV+MPMRI Sbjct: 351 ----TLPGNATFK----YVVMPMRI 367 >gi|93004835|ref|YP_579272.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5] gi|92392513|gb|ABE73788.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5] Length = 391 Score = 173 bits (439), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 116/413 (28%), Positives = 214/413 (51%), Gaps = 50/413 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ R +L+ + + ++++ + + ++ LQ + L + AS E+E+T + Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLFESELVLTASDLEVELTSTLKLP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPES 116 C G+ T+ A L DI + L AQ+S +EN+ ++ G S F L + P Sbjct: 61 AGACVEAGTTTLPATKLRDICKSLPAQAQVSLITQENQ---RCLLTSGKSRFTLGTLPSE 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++PS E + ++ S L +L+ +T FAMA +++RYYL G+ F ++++ +L VAT Sbjct: 118 DYPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVAT 175 Query: 177 DGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRI-------LSSKDSSVKVSLSESR 227 DGHRLA+A +++ A ++ I+PRKAV E+ R+ L KD++V +S Sbjct: 176 DGHRLALARSVIEVSADLSM--QAILPRKAVIELERLATELGKMLGDKDNAVTLSFGREF 233 Query: 228 IHLNIE--------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + +++ ++ + RLIDG+FP+Y+ V+P + DK N + + Sbjct: 234 LQVSLPFGDVDSAGQVSQDLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLR 293 Query: 274 RVSIMSSVRIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 RV+I+S+ + + V + +SD + + +N + +A+E + Y PM++ FN YL ++ Sbjct: 294 RVAILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDV 353 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I D + + SN+SV + N+ N YV+MPMRI Sbjct: 354 LGVIQGD------LQMHMSQSNASVLV---------NQLNDEFHQYVIMPMRI 391 >gi|197116404|ref|YP_002136831.1| DNA polymerase III subunit beta [Geobacter bemidjiensis Bem] gi|197085764|gb|ACH37035.1| DNA polymerase III, beta subunit [Geobacter bemidjiensis Bem] Length = 372 Score = 173 bits (438), Expect = 4e-41, Method: Compositional matrix adjust. Identities = 115/394 (29%), Positives = 213/394 (54%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ L I+E++NT+P+ + LL+ + L I A+ E+ + + P + Sbjct: 1 MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119 V G ITVSA LY+IV+++ D +I F K+N+ V I+ G + F + EFP Sbjct: 61 VIREGKITVSAKKLYEIVKEMPD-EEIHFTTKDNDW---VEITCGKARFNIVGLSSEEFP 116 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF---FHINEEDLKLCA 173 KEE ++ + +L +++E+T +A+ +E +Y LNG+F F N E++ L Sbjct: 117 YFPKVKEESFLV---FKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENV-LKM 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATDGHRL+V++ I I S +I P+K + E+ +++ +D + + ++ + Sbjct: 173 VATDGHRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIK 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +RLIDGEFP+Y VIP SND+ +++N ++ R++I+SS + + VK+ ++ Sbjct: 233 KGNTVVVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVN 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + ++ NP++G+A E + V Y + FN KYL++++ + EV +L Sbjct: 293 PELVIISSSNPELGEAREEIEVQYEGNNISARFNAKYLIDVLSVMEQ-----REVELKLK 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V ++ ++ V+MPMR+ Sbjct: 348 DELSPVIMKAAAEEE---------FLAVIMPMRL 372 >gi|224827187|ref|ZP_03700282.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002] gi|224600580|gb|EEG06768.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002] Length = 368 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/392 (28%), Positives = 201/392 (51%), Gaps = 36/392 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA----IP 58 + ER +L+ L I+ER++T+P+ +VL++ DG + A+ EI+IT A +P Sbjct: 4 LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKDGAVGFLATDLEIQITTASAETLP 63 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +T SA L DI+R + + +S +++ + + G S F LQ+ P +F Sbjct: 64 GE---SFRLTTSAKKLQDILRAIPGNSTVSLEQQDN---RLTLKAGKSRFNLQTLPAEDF 117 Query: 119 P-----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P T E +F L LK L+ + ++MA ++IRYYLNG+ ++ ++L Sbjct: 118 PLLSVNGTPEA----TFSLPQKELKRLISQVQYSMAVQDIRYYLNGLLMQTDDNQVRL-- 171 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATDGHRLA A +I + K +I+PRK + E+ ++L D + + + +++ Sbjct: 172 VATDGHRLAFAAAEIDTSLPKA-EVILPRKTIIELYKLLQDSDEPITIEVLANQVRFTFG 230 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S + +++DG+FP+Y VIP NDK ++ A+ R +I+++ + + V+L L Sbjct: 231 STVIISKVVDGKFPDYNRVIPLDNDKLFLIDRLTFLHALQRAAILANEKFRGVRLVLKPG 290 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + N + +A E + + Y ++I FN YLL+++ N+ ++ + ++ F + Sbjct: 291 SLSILCTNSEQEEAEEELEIDYGGGELEIGFNINYLLDVLTNLPAETL---QLAF--GDA 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N S + D Y++MPMRI Sbjct: 346 NRSTLVTIPDYSQFK---------YIVMPMRI 368 >gi|6606558|gb|AAF19208.1|AF213933_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 114/388 (29%), Positives = 215/388 (55%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + L R+I + +T+P+ ++L+ N+G++ + A+ E E+ I S Sbjct: 1 MKFNIKNKIFTQHLKKINRLITKNSTLPILENILITVNNGIISLTATNLETELISNIEIS 60 Query: 61 VDVC-GSITVSAHLLYDIVR---KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 GSITVS L +I R +L D +IS KE +++IS +SN+ L + P Sbjct: 61 KTYTPGSITVSGQKLLNICRNSSELSD-IKISLNKE-----KIHISLENSNYILNTLPAE 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ ++V F ++S +LK ++E+THF+M +++RYYLNG+ N+ L VAT Sbjct: 115 NFPNHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLEKNKTSL--YTVAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG+RL +A+ + + + S I+PRK + E+ ++L+ + + V + ++ I + IE L Sbjct: 173 DGYRLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLI 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +V+LI+GE+P+Y++++ + +N L+Q++ RVS++S V++ ++++K Sbjct: 232 FTVQLIEGEYPDYKSILSRKKQHPIILNNKILKQSLLRVSVLSDKNFCGVEIYITNNKFQ 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N KA +S + Y ++I N Y++E+++ ISS + +F + SN+S Sbjct: 292 VLSNNQHEEKAEDSFKINYYGENIEISINVYYIIEVLNVISSKNI----FIF-FNESNNS 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I ++ S YV+M +R Sbjct: 347 IHIESEEDHS---------LLYVIMLLR 365 >gi|319940694|ref|ZP_08015036.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis 3_1_45B] gi|319805845|gb|EFW02612.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis 3_1_45B] Length = 372 Score = 173 bits (438), Expect = 5e-41, Method: Compositional matrix adjust. Identities = 112/371 (30%), Positives = 198/371 (53%), Gaps = 24/371 (6%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYDIV 78 I+ER ++PV ++L++ + + +I+I + V+ C GSIT++A +I+ Sbjct: 21 IVERNQSLPVVSNILIEQKGVDVTFSTTDLDIQIRTSASVGVEGCEGSITLNAQKFSEIL 80 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 L+ + ++ G +++ +F +Q+ P +FP K + +F L + L+ Sbjct: 81 GALRPLDTLDVDIDD--GGLADLTTSGGHFSMQTLPAQDFPVLKIMPWTTTFTLPAKTLR 138 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV--AEVDIVAQIAKMP 196 L+ T FAMA ++IRY+L G+ F + E KL AVATD HRLA AE+D + Q K+ Sbjct: 139 YLLTMTAFAMAPKDIRYFLMGVLFVV--EGAKLIAVATDTHRLAYCEAEIDGLNQETKIE 196 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC- 255 +I VPRK V E+LRIL D+ V V++ +++I N + +LI+G+FP+YQ V+P Sbjct: 197 AI-VPRKTVRELLRILPEDDTPVTVNVGDTQIGFNFAGIEFVSKLIEGKFPDYQRVMPTL 255 Query: 256 -SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314 +N + + +N L A+ RV I+++ R ++ + L + N + +A + + V Sbjct: 256 DTNPQCVSINREELLLALRRVQILTNERFHGIRWLFTKGSLTVQGSNAEQEEASQKLAVN 315 Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 + +DI FN Y++E+++N+ + EV F ++ SV + + S Sbjct: 316 WEWDDLDIGFNLLYMIELLNNLK-----NSEVNFHFAATPKSVLVTMPESSSFR------ 364 Query: 375 NAFYVLMPMRI 385 Y++MPMRI Sbjct: 365 ---YLIMPMRI 372 >gi|71064583|ref|YP_263310.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4] gi|71037568|gb|AAZ17876.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4] Length = 391 Score = 172 bits (437), Expect = 6e-41, Method: Compositional matrix adjust. Identities = 117/413 (28%), Positives = 216/413 (52%), Gaps = 50/413 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ R +L+ + + ++++ + + ++ LQ ++ L + AS E+E+T + Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPES 116 C G+ T+ A L DI + L AQ++ +ENE ++ G S F L + P Sbjct: 61 AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTTQENE---RCLLTSGKSRFTLGTLPSE 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++PS E + ++ S L +L+ +T FAMA +++RYYL G+ F ++++ +L VAT Sbjct: 118 DYPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVAT 175 Query: 177 DGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRI-------LSSKDSSVKVSLSESR 227 DGHRLA+A +D+ A + M +I+ PRKAV E+ R+ L +D++V +S Sbjct: 176 DGHRLALARSVIDVNADL-NMQAIL-PRKAVIELERLASELGKMLGDQDNAVTLSFGREF 233 Query: 228 IHLNIE--------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + +++ ++ + RLIDG+FP+Y+ V+P + DK N + + Sbjct: 234 LQVSLPFGDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLR 293 Query: 274 RVSIMSSVRIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 RV+I+S+ + + V + +SD + + +N + +A+E + Y PM++ FN YL ++ Sbjct: 294 RVAILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDV 353 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I D + + SN+SV + N+ N YV+MPMRI Sbjct: 354 LGVIQGD------LQMHMSQSNASVLV---------NQLNDEFHQYVIMPMRI 391 >gi|212659823|gb|ACJ36985.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 265 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 90/265 (33%), Positives = 153/265 (57%), Gaps = 5/265 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 + L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT Sbjct: 1 NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 + A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 61 IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+ Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVD 273 Y+ VIP D+E++V LR A++ Sbjct: 236 YEGVIPIGADREVKVAREVLRDALN 260 >gi|241765811|ref|ZP_04763751.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN] gi|241364293|gb|EER59448.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN] Length = 372 Score = 172 bits (437), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 112/382 (29%), Positives = 192/382 (50%), Gaps = 26/382 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 11 VLAVLQSVSGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127 V A L DI+R + +S +++ + G S F LQ+ P +FP +E + Sbjct: 71 VGARKLIDILRTMPGDQTVSLESAQ---SKLILKGGKSRFTLQTLPAEDFPLVQESAAFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + LK+L+ + FAMA ++IRYYLNGI F E +L VATDGHRLA A Sbjct: 128 PVFSVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFV--AEGKQLSLVATDGHRLAFASAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243 + ++ K +I+PRK V E+ R+LS +++ + ++ + +L++ Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGDNQPHIEMQFANNQAKFTFGGMEFVTKLVE 244 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L+L L + +N + Sbjct: 245 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLRVASNNAE 304 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +A++ +++ Y ++I FN YL++ + N+ D V L NSS + D Sbjct: 305 QEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQ-----DMVKVELSDGNSSALVTIPD 359 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 N YV+MPMRI Sbjct: 360 NS---------NFKYVVMPMRI 372 >gi|39995112|ref|NP_951063.1| DNA polymerase III subunit beta [Geobacter sulfurreducens PCA] gi|39981874|gb|AAR33336.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens PCA] gi|298504142|gb|ADI82865.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens KN400] Length = 372 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 115/396 (29%), Positives = 211/396 (53%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L I+E++NT+P+ +VL++A + +E+ A+ E+ + + P + Sbjct: 1 MEFTIDRDTFSRALQKIQGIVEKRNTMPILSNVLIEALEDRIELTATDLEVGMKSSYPTT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119 V G ITVSA LY+IV++L D ISF K N+ V I G + F + EFP Sbjct: 61 VASQGKITVSAKKLYEIVKELPD-ETISFLTKANDY---VEIRCGKAKFTIVGLSSEEFP 116 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAV 174 EE ++ + S +L +++E+T +A+ +E +Y LNG F +EED + L V Sbjct: 117 YFPKVNEESFI---RIESGLLADMIEKTSYAICFDETKYNLNGTFVKASEEDGRSILRMV 173 Query: 175 ATDGHRLAVAEVD----IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATDGHRL++ + + + ++AK +I P+K + E+ ++ + + + + ++ + Sbjct: 174 ATDGHRLSITQREFNGAVSPEMAK--GVIFPKKGIFELKKMCEEESTQLSLGFLDNSAVI 231 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + +RL+DGEFP+Y V+P +ND+ + V ++ R+SI+SS + + +K+ + Sbjct: 232 VKGNTVVVMRLVDGEFPDYTRVVPVANDRIVTVARDPFFHSLRRMSILSSEKFKGIKMDI 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVVFR 349 + ++ NP++G+A E ++ + + I FN KYL++++ V+D+ V Sbjct: 292 QESGMVISSSNPELGEASEELDAVFAGDAISIRFNAKYLIDVL------AVLDESSVALH 345 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L S +R D D V+MPMR+ Sbjct: 346 LKDELSPAIVRPADGDGFTA---------VIMPMRL 372 >gi|187735318|ref|YP_001877430.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425370|gb|ACD04649.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC BAA-835] Length = 366 Score = 172 bits (436), Expect = 7e-41, Method: Compositional matrix adjust. Identities = 111/385 (28%), Positives = 196/385 (50%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ + L+ L ++ K T+P+ +V ++A +G + A+ ++ ITG +PA+ Sbjct: 1 MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++T+ A L I+ +L + Q+ + N+ E G S F L P EFP Sbjct: 61 VLREGTVTLPAKKLVSIISELPEAEVQVDVNQRNQAAVEC----GRSQFKLNGLPADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +++ ++L++ + RT +A++T+ RY LNGI ++ + K+ VATDG Sbjct: 117 ELPSFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGI--SLSFRNGKMTLVATDGR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+AE + + I+P KAVGE+ R+L + +V + + ++ I + Sbjct: 175 RLALAETALEFPEEQQLDAILPTKAVGELRRLLD-EVGTVTIRFTRNQAAFEINDTLLIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG +PNY+ VIP + + + C L + V RVS++S + +KL+ ++L + Sbjct: 234 KLIDGNYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVAS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +G+A ESM + Y+ P+ I FN + + + ++ D V+ ++ D + V Sbjct: 294 SAEGVGEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTVITLNLI---DEMSPGVLK 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 G + YVLMPMR Sbjct: 351 IGDE------------FLYVLMPMR 363 >gi|11320913|gb|AAG33952.1|AF197892_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 172 bits (436), Expect = 8e-41, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 216/387 (55%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFNINNKIFIQYLKKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELIANIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEF 118 D + GS TVS+ + DI R D + I EL + ++I+ +S++ L++ P F Sbjct: 61 EDCISGSTTVSSQKILDICRYSSDLSDIKI----ELSQDKMHITSDNSHYILKTLPIDNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +V F + S+ L++++E+THF+M +++RYYLNG+ I + L + VATDG Sbjct: 117 PNHNSFHHVVEFFIHSNSLRDMIEKTHFSMGKKDVRYYLNGMLLEIIDNSLHM--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RLA+A+ ++ QI K +I++ R+ + E+ ++L+ S+K+ + ++ I + I++L Sbjct: 175 YRLALAKT-LLNQIKKQSFAIVIARQGIIELYKLLNVSKQSIKILIGKNNIRIFIKNLIF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G FPNY +V + + +NC L++++ R +I+S + V++ +++++ + Sbjct: 234 TAQLIEGTFPNYTSVFLKKKNNGIILNCKLLKRSLLRTAILSHEKFCGVEIHINNNEFKV 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A + + YN ++I N Y+L+I++ ISS + ++ ++ SN+S+ Sbjct: 294 LSDNQEEETAEDKFQIDYNNPSIEISINVYYILDILNTISS-----ENILLFVNHSNNSI 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +N + Y++M ++ Sbjct: 349 QIEA---------ENDASTIYIVMLLK 366 >gi|319790696|ref|YP_004152336.1| DNA polymerase iii, beta subunit [Variovorax paradoxus EPS] gi|315593159|gb|ADU34225.1| DNA polymerase III, beta subunit [Variovorax paradoxus EPS] Length = 368 Score = 172 bits (436), Expect = 9e-41, Method: Compositional matrix adjust. Identities = 110/378 (29%), Positives = 195/378 (51%), Gaps = 22/378 (5%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L L I+ER++T+P+ +VL++ G L++ S EI+I D + T Sbjct: 11 VLAALQSVSGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGDEGNFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 + A L DI+R + +S +++ + G S F LQS P +FP +E + Sbjct: 71 IGARKLIDILRTMPADQTVSL---ESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAANFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + LK+L+ + FAMA +IRYYLNGI F E +L VATDGHRLA + Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFSSAM 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ + +I+PRK V E+ R+LS + ++++ + ++ + + +L++G+FP Sbjct: 186 LDVEVPRQ-EVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L ++ R +I++S + + V+L++ L + +N + +A Sbjct: 245 DYNRVIPKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 + +++ Y ++I FN YL++ + N+ D V D L SNSS + + S Sbjct: 305 QDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLD-----LADSNSSALLTIPENASF 359 Query: 368 NNKDNKVNAFYVLMPMRI 385 YV+MPMRI Sbjct: 360 K---------YVVMPMRI 368 >gi|262193328|ref|YP_003264537.1| DNA polymerase III subunit beta [Haliangium ochraceum DSM 14365] gi|262076675|gb|ACY12644.1| DNA polymerase III, beta subunit [Haliangium ochraceum DSM 14365] Length = 365 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 109/386 (28%), Positives = 204/386 (52%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 M+ +++S+ L+ L A I +RK+T+P+ +VLL+ + L + A+ + I+ + + Sbjct: 1 MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +TV A L+DIV + + + +N IS G + L P+ +FP Sbjct: 61 KNSAEGGLTVGAKALFDIVANMPEDDVVLRRTDNNWA---EISCGKVKYRLVGMPDRDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E ++ + +++ +++RT F++ +E R++LNG+ F + ++ V+TDGH Sbjct: 118 KVPEHSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARM--VSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ E + A II+P+K +GEI ++L S + V++ I ++ +S+ ++V Sbjct: 176 RLSKVERTLEGAPALTAGIIIPKKGIGEIKKLLESGGKAA-VAVKTPYIFVHADSMILAV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP Y+ VIP + +E+ ++ L A+ R +MSS + VK ++S D L +T Sbjct: 235 KLIESQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSS-ETRGVKFNVSPDSLVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DNPD+G+ E + Y+ + I FN KY+++++ +++ D+V L+ + Sbjct: 294 DNPDIGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMAT-----DQVTLELNGELDPGLL 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D N V+MPMRI Sbjct: 349 RPFSDD---------NYLGVVMPMRI 365 >gi|34580501|ref|ZP_00141981.1| DNA polymerase III beta chain [Rickettsia sibirica 246] gi|28261886|gb|EAA25390.1| DNA polymerase III beta chain [Rickettsia sibirica 246] Length = 379 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 124/399 (31%), Positives = 215/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + ++V LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEVLLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 SM +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 SMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDVV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|311103226|ref|YP_003976079.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans A8] gi|310757915|gb|ADP13364.1| DNA polymerase III, beta subunit [Achromobacter xylosoxidans A8] Length = 369 Score = 172 bits (435), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 27/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT V Sbjct: 4 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 63 Query: 63 VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S TV+A L DI++ L D + N+L ++ S F LQ+ SEFP+ Sbjct: 64 QDNESTTVAARKLLDILKALPDTGDVRLALASNKL----SVQSAKSRFALQTLAASEFPT 119 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E++ S + L++L HFAMA ++IRYYLNG+ E ++ AVATDGH Sbjct: 120 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 177 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA E D I++ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 178 RLAHCSTEAD---GISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + VN L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRHFLVNREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y +D+ FN YLL+++ N+ D + + D++ S++ Sbjct: 295 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDNI---QWSVMPDANASAL 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D K YV+MPMRI Sbjct: 352 ITLPEDDQFK----------YVVMPMRI 369 >gi|254230348|ref|ZP_04923734.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25] gi|151937140|gb|EDN56012.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25] Length = 256 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 85/273 (31%), Positives = 164/273 (60%), Gaps = 17/273 (6%) Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P ++FP+ ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I+ L+ Sbjct: 1 LPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR-- 58 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +VATDGHR+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + Sbjct: 59 SVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEV 117 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + + +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ Sbjct: 118 NNFTFTSKLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAD 177 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ +T +NP+ +A E ++V + ++I FN Y+L++++ + + V + Sbjct: 178 TEMRITANNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSD 232 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N+S I D DS A YV+MP+R+ Sbjct: 233 ANASALIENADDDS---------AMYVVMPIRL 256 >gi|299135925|ref|ZP_07029109.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8] gi|298602049|gb|EFI58203.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8] Length = 389 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 201/388 (51%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ITV R+++L L A ++ERK TIP+ + L +A+D L I A+ + + + A Sbjct: 17 LEITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASDEKLTITATDLDQSLKTSCVAK 76 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T+ A L+D ++ L +G +N V I G SN + + FP Sbjct: 77 VKKAGACTIPARKLFDYIKLLPEGDISIKLMDNHW---VQIRAGRSNTKMVGMARANFPQ 133 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F++ ++ LKN++ +T FA++ EE RY LNG + E + + VATDGHR Sbjct: 134 VPEFPEVGVFKINAASLKNMIAKTIFAISNEESRYTLNGALLVLKAESMAM--VATDGHR 191 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM 237 LA E + + I+ ++PRKA+ E+ +L + ++ V+ + E + I + Sbjct: 192 LAHIEKLGEALEGISGEKKTLIPRKALAELSGLLGASETDFVEFADDEQSLFFRIGGRVL 251 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + R + G+FPNY+ V+P N K + V +L ++ RV+ + R A+K+ L ++L + Sbjct: 252 TSRKLTGQFPNYEAVLPRDNTKFVIVRSEDLMSSIQRVAQFADERSGAIKIRLEQNELKL 311 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D G++ + + YN P+ + FN YL++ + V EV + S+ Sbjct: 312 SAQSTDAGESEDIIETPYNYDPLVVGFNSSYLVDFLRATG----VTGEVRLEFKDAQSAG 367 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +D N+D K Y+LMPMRI Sbjct: 368 QMRPED----GNEDVKYR--YILMPMRI 389 >gi|15892506|ref|NP_360220.1| DNA polymerase III subunit beta [Rickettsia conorii str. Malish 7] gi|20137866|sp|Q92I37|DPO3B_RICCN RecName: Full=DNA polymerase III subunit beta gi|15619665|gb|AAL03121.1| DNA polymerase III beta chain [Rickettsia conorii str. Malish 7] Length = 379 Score = 171 bits (434), Expect = 1e-40, Method: Compositional matrix adjust. Identities = 123/399 (30%), Positives = 215/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + +++ LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 SM +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 SMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDVV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|325980883|ref|YP_004293285.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212] gi|325530402|gb|ADZ25123.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212] Length = 371 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 118/388 (30%), Positives = 209/388 (53%), Gaps = 25/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I R +L+ L I+ER+ T+P+ +VL++ N + EI+I + S+ Sbjct: 4 IKTNRDTLLKPLQTVTGIVERRQTLPILSNVLIRQNQEKTSFLTTDLEIQIKTEVAESLS 63 Query: 63 VCG--SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + TVSA L DI+R L +++ ++++ + + S F LQ P +FP Sbjct: 64 SQKDFAFTVSAKKLQDILRSLSADIEVTLTRKDD---HLLVKSHKSAFNLQILPAEDFPE 120 Query: 121 -TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 T+E E + L K+L+ FA+A ++IRYYLNG+ I+ + +L +V TDGH Sbjct: 121 VTEEPESDNAVTLTQKEFKDLLHLVQFAVAQQDIRYYLNGLLLLIDGK--QLISVGTDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + + K +I+PRKAV E+ ++L + +K+ ++++ + +++ Sbjct: 179 RLAFVSTGL-DKAQKKQEVILPRKAVFELSKLLHDNEDPIKIEYFQNKVRFSFSDITLIS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKLCM 297 ++IDG+FP+Y VIP N+K +N QA+ RVSI+S S + + V+L ++ D L + Sbjct: 238 KIIDGKFPDYNRVIPTRNNKLFEINRLVFLQALQRVSILSNQSDKFRGVRLIVNKDNLRI 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N + +A E + + Y + P+DI N YL+++++N++S+ V + F +++NSSV Sbjct: 298 ICKNNEQEEAEEELEINYQDDPVDISLNITYLMDLLNNVTSERV---QCAF--ENANSSV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N+ K Y++MPMRI Sbjct: 353 LM-----TVPGNEIFK----YIVMPMRI 371 >gi|293602696|ref|ZP_06685137.1| DNA-directed DNA polymerase III beta subunit [Achromobacter piechaudii ATCC 43553] gi|292818887|gb|EFF77927.1| DNA-directed DNA polymerase III beta subunit [Achromobacter piechaudii ATCC 43553] Length = 371 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 202/388 (52%), Gaps = 27/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT V Sbjct: 6 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65 Query: 63 VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S TV+A L DI++ L D + N+L ++ S F LQ+ SEFP+ Sbjct: 66 QDNESTTVAARKLLDILKALPDTGDVRLALASNKL----SVQSAKSRFALQTLAASEFPT 121 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E++ S + L++L HFAMA ++IRYYLNG+ E ++ AVATDGH Sbjct: 122 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 179 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA E D IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 180 RLAHCSTEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEVVSIDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + V L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFMVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y +D+ FN YLL+++ N+ D + + D++ S++ Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDSI---QWSVMPDANASAL 353 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D K YV+MPMRI Sbjct: 354 ITLPEDDQFK----------YVVMPMRI 371 >gi|134297883|ref|YP_001111379.1| DNA polymerase III subunit beta [Desulfotomaculum reducens MI-1] gi|134050583|gb|ABO48554.1| DNA polymerase III, beta subunit [Desulfotomaculum reducens MI-1] Length = 365 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 108/345 (31%), Positives = 184/345 (53%), Gaps = 9/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI R ++++ + A R + KN +P+ +LL A D L+++A+ E+ I +P + Sbjct: 1 MKIICTRQNLIQGVTTAQRAVSAKNPLPILSGILLTAKDNKLKLQATDLEMGIQCVVPCT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSI + A L +IVR+L D QI E+ GT V I +G S + F EFP Sbjct: 61 TQEEGSIVLPAKYLSEIVRRLPDSPIQI----ESNQGTNVIIRYGQSEITINGFDAEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + S + LK + + FA ++E R G+ I L+L V TD H Sbjct: 117 TFPKPQSKNSLTIPEEELKEYLRQILFATLSDENRPVFTGVLMEILNGTLRL--VTTDTH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ E+ + + +II+P K + E+ R++ + D V +SL E++I +E + Sbjct: 175 RLAMREIK-DSSVDNDINIIIPGKTLNELTRVIGAADQQVTISLGENQIIFGMEDTLLIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ VIP + +R+ +L +A +R S+++ V Q ++L++ +K+ +T Sbjct: 234 RLIEGQFPNYRQVIPQGHKTRIRLKTKDLLEASERASLLARVGTQIIRLNIEEEKIILTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 N ++G+ E + VY + I FN YL++ + I SD + D Sbjct: 294 -NTEVGRIHEEVPVYLQGESLQISFNAMYLIDALRAIGSDNIYFD 337 >gi|148262087|ref|YP_001228793.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4] gi|146395587|gb|ABQ24220.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4] Length = 372 Score = 171 bits (434), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 191/345 (55%), Gaps = 7/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + + L I+E++NT+P+ + L++A++ L I A+ E+ + + P + Sbjct: 1 MEFRVAKDTFTKALQKIQGIVEKRNTMPILSNTLIEAHNDTLYITATDLEVGMKSSYPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA +Y+I+++L D + KEN+ V I G ++F + EFP Sbjct: 61 VIKEGKITVSAKKIYEIIKELSDEEIVFSTKENDW---VEIHCGKAHFNIVGLSPDEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + L + +L ++E+T +A+ +E ++ LNGIF E+ + L VATDG Sbjct: 118 FPKINDNSFITLNNQILSEMIEKTSYAICNDETKFNLNGIFIKATTENERNVLRMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL+V E ++ I+ +I P+K + E+ ++ + + + ++ + + Sbjct: 178 HRLSVTEKELSGNISNELNKGVIFPKKGIFELKKMTEEEIGDIMLGFMDNSAVIKKGNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDGEFP+Y VIP +NDK +++ +L ++ R++I+SS + + +KL + + + Sbjct: 238 IVMRLIDGEFPDYTKVIPTNNDKIIKILRESLLHSLRRMAILSSEKFKGIKLDVRNGSVE 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ NP++G A E + V Y P+ + FN +YL++++ + DEV Sbjct: 298 ISSSNPELGDAREELEVDYQGEPLSVRFNARYLIDVLTILKEDEV 342 >gi|312794751|ref|YP_004027673.1| DNA polymerase III, beta chain [Burkholderia rhizoxinica HKI 454] gi|312166526|emb|CBW73529.1| DNA polymerase III, beta chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 401 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 200/385 (51%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 + ER +L L I+ER++T+P+ ++L+ N + ++ E++IT + Sbjct: 37 VKTERDTLLRPLQTVSGIVERRHTLPILANLLISKNGPDVSFLSTDLELQITTRADFGIG 96 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS- 120 + + TV+A L DI+R + G + L + G S F LQ+ EFP+ Sbjct: 97 NEQVATTVAARKLVDILRAMPIGDVTLTLSDKRL----TVQSGKSRFALQTLAADEFPTL 152 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +++ + + K L+ HFAMA ++IRYYLNG+ ++ + +L AVATDGHR Sbjct: 153 AQAKDFGANLSVPQKTFKQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGHR 210 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + A+ +I+PRK + E+ R+L D + + ++ +++ + + + Sbjct: 211 LAFSSMKTDGAFARQ-EVIIPRKTILELQRLLEDIDDPLTIDIASTQVKFTFGQVELVSK 269 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP++Q VIP + + L+ ++ R +I++S + + V+ ++ +L + Sbjct: 270 LVEGKFPDFQRVIPKGHKNTFMIGRDELQHSLQRAAILTSDKFKGVRCIVAPGQLKIMST 329 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N D +A E + + Y +D+ FN YLL+++ N+ D + +V D+++S++ Sbjct: 330 NADQEEAQEELEIAYQGDTLDVGFNVTYLLDVLANLKVDMI---QVALGSDATSSALITI 386 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ K YV+MPMRI Sbjct: 387 PENEQFK----------YVVMPMRI 401 >gi|187479880|ref|YP_787905.1| DNA polymerase III subunit beta [Bordetella avium 197N] gi|115424467|emb|CAJ51021.1| DNA polymerase III, beta chain [Bordetella avium 197N] Length = 371 Score = 171 bits (433), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 117/388 (30%), Positives = 202/388 (52%), Gaps = 27/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L+ L I+ER++T+P+ ++L++ + A+ E++IT V Sbjct: 6 VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65 Query: 63 VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S TV+A L DI++ L D + N+L ++ S F LQ+ SEFP+ Sbjct: 66 ADNESTTVAARKLLDILKALPDTGDVKLALASNKL----SVQSAKSRFALQTLAASEFPT 121 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E++ S L L++L HFAMA ++IRYYLNG+ E ++ AVATDGH Sbjct: 122 VAQPEQWDVSLTLPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 179 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA E D IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 180 RLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVSLDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + V+ L+ ++ R +I+++ + + V+L L + + + Sbjct: 237 VSKLVEGKFPDFSRVIPTNYTRHFLVSREALQGSLQRAAILTTDKFKGVRLQLGHNVMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y+ +D+ FN YLL+++ N+ E V+ V + +N+S Sbjct: 297 SSSNAEQEEAQEEIDIDYSHEALDVGFNVGYLLDVLANVKV-ENVEWSV---MPDANASA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D D YV+MPMRI Sbjct: 353 LITLPDDDQFK---------YVVMPMRI 371 >gi|171462834|ref|YP_001796947.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192372|gb|ACB43333.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 371 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 210/390 (53%), Gaps = 29/390 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 + R ++L+ L I+ER++T+P+ ++L + + + ++ EI+IT V Sbjct: 4 VNTSRDNLLKPLQVVSGIVERRHTLPILANLLFKKIEEKVSFVSTDIEIQITTNANFGVG 63 Query: 62 --DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV + TV+A L DI+R L +G K++++ + G S F LQ+ +EFP Sbjct: 64 SEDV--TTTVAARKLLDILRALPEGPVFLNLKDSKM----VVQSGKSRFSLQTLSATEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E +++++ + L+ + HF+MA ++IRYYLNG+ + E ++ AVATDG Sbjct: 118 VMQSVGEVTAAWKMSQKSFRQLISQVHFSMAQQDIRYYLNGMLLVV--EGKEVVAVATDG 175 Query: 179 HRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 HRLA ++V++V + + +I+PRK + E +L D +++SL+ +++ + + Sbjct: 176 HRLAYSQVELVEAPSGSGQKQEVIIPRKTILECQHLLEGSDEPLEISLTANQVKFSFGDI 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +L++G+FP++Q VIP L V L+ A+ R +I+++ + + V+ SLS +++ Sbjct: 236 ELISKLVEGKFPDFQRVIPKGQKNSLVVGRDALQSALQRAAILTTDKFKGVRFSLSPNRI 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N + +A E + Y ++I FN YLL+++ N+ ++++ L +NS Sbjct: 296 TIQSTNAEQEEAQEEIETEYAGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDANS 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I +S YV+MPMRI Sbjct: 351 SAVITLPGSESFK---------YVVMPMRI 371 >gi|229586697|ref|YP_002845198.1| DNA polymerase III subunit beta [Rickettsia africae ESF-5] gi|228021747|gb|ACP53455.1| DNA polymerase III beta chain [Rickettsia africae ESF-5] Length = 379 Score = 171 bits (432), Expect = 2e-40, Method: Compositional matrix adjust. Identities = 123/399 (30%), Positives = 215/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLLAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + +++ LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 SM +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 SMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDVV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|11320911|gb|AAG33951.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 171 bits (432), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 193/344 (56%), Gaps = 7/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ L + R I + + P+ +VL+ + +L + A+ EIE+ I S Sbjct: 1 MKFNIKNNIFVQHLQNVNRFITKNTSFPILENVLISIKNRILSLTATNLEIELISNIELS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSITVS+ L I R + + I N ++++ S++ L + P +FP Sbjct: 61 KHYVPGSITVSSRKLLQICRNSLNSSNIQVELHN---NKMHVISEKSHYILNTLPSDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y+ F + S +LK ++E+THF+M +++RYYLNG+ F I + L + VATDG+ Sbjct: 118 NHNNXCYISEFTIQSKILKEMIEKTHFSMGKQDVRYYLNGMLFKIXDNSLHI--VATDGY 175 Query: 180 RLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL ++ + + I K SII+ RK + E+ ++L+S VKV + S I + IE L + Sbjct: 176 RLGTSKTLLTKEEIIKNFSIIIARKGITELYKLLNSSTQLVKVFIGRSNIRIYIEQLIFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY+++ + + +NC L+Q++ R +I++ + +++ ++ D+ + Sbjct: 236 AQLIEGKFPNYESIFLKKKNNGIILNCQLLKQSLLRAAILAHEKFCGIEIHVNKDQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 DN + A ++ ++ Y ++I N Y+L+I++ I+S ++ Sbjct: 296 SDNQEEETAEDTFDINYIGPSIEISINVYYILDILNVINSKNIL 339 >gi|126640117|ref|YP_001083101.1| DNA polymerase III [Acinetobacter baumannii ATCC 17978] Length = 305 Score = 170 bits (431), Expect = 3e-40, Method: Compositional matrix adjust. Identities = 93/297 (31%), Positives = 163/297 (54%), Gaps = 28/297 (9%) Query: 101 ISHGDSNFYLQSFPESEFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 + G+S F L + P ++P T E ++ LK L E+T FAMA +++R+YL G Sbjct: 25 LKSGNSRFVLGTLPAEDYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTG 84 Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219 I+E L+ AV TDGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + Sbjct: 85 TLLEIDENQLR--AVTTDGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQL 142 Query: 220 KVSLSESRIHLNIESLS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268 + + +++ I + S + +LIDG+FP+Y+ VIP DK + + Sbjct: 143 TLLIGRELLNVTINTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVF 202 Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 +Q++ RV+I+S+ +++ V L+ + D L + +NP+ +AIE + + Y P+++ FN +Y Sbjct: 203 KQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQY 262 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 LL+++ + D+V + +N SV ++ + YV+MPMR+ Sbjct: 263 LLDVLGVLDG-----DDVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 305 >gi|78221230|ref|YP_382977.1| DNA polymerase III subunit beta [Geobacter metallireducens GS-15] gi|78192485|gb|ABB30252.1| DNA polymerase III, beta subunit [Geobacter metallireducens GS-15] Length = 373 Score = 170 bits (430), Expect = 4e-40, Method: Compositional matrix adjust. Identities = 119/397 (29%), Positives = 218/397 (54%), Gaps = 36/397 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++ L I+E++NT+P+ +VL++A+ +E+ A+ E+ + + + Sbjct: 1 MEFKIDKETFSRALQKIQGIVEKRNTMPILSNVLIEAHADRIELTATDLEVGMKSSYETT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G ITVSA LY+IV++L + A ISF KEN+ V I G ++F + EFP Sbjct: 61 VTREGRITVSAKKLYEIVKELPEEA-ISFATKENDW---VEIRCGKAHFSIVGLSPEEFP 116 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAV 174 EE + + ++L +++E+T +A+ +E +Y LNG F ED K L V Sbjct: 117 YFPKVNEESLI---RIEGALLADMIEKTAYAICFDETKYNLNGTFVKATVEDDKPILRMV 173 Query: 175 ATDGHRLAVAEVD----IVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIH 229 ATDGHRL++AE + + ++AK +I P+K + E+ +I + + + ++ Sbjct: 174 ATDGHRLSIAEKEFHGAVGPEMAK--GVIFPKKGIFELKKICEEATTEELALGFMDNSAV 231 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + + +RL+DGEFP+Y V+P +NDK + V ++ R+SI+SS + + +++ Sbjct: 232 IKKGNTVVVMRLVDGEFPDYTRVVPVANDKIVTVARDPFLHSLRRMSILSSEKFKGIRME 291 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ +++ ++ NP++G+A E ++ Y+ P+ I FN KYLL+++ ++ EV +V R Sbjct: 292 INGEQMIISSSNPELGEASEELDAAYSGPPLSIRFNAKYLLDVLAVLNESEVA---LVLR 348 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFY-VLMPMRI 385 + S + V K V+ F V+MPMR+ Sbjct: 349 DELSPAIV------------KPAAVDGFTAVIMPMRL 373 >gi|260221775|emb|CBA30676.1| DNA polymerase III subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 362 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 97/334 (29%), Positives = 179/334 (53%), Gaps = 8/334 (2%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VLL+ L++ S EI+I D + T Sbjct: 11 VLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGDTGSFTTT 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127 + A L DI+R + +S +++ + G S F LQ+ +FP +E + Sbjct: 71 IGARKLIDILRTMPGDQTVSLESSQ---SKIILKGGKSKFTLQTMQAEDFPLVQESASFG 127 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 F + LK+L+ + FAMA +IRYYLNGI F E +L VATDGHRLA A Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFASAT 185 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + ++ K +I+PRK V E+ R+LS + ++++ + ++ + + +L++G+FP Sbjct: 186 LDVEVPKQ-EVILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTKLVEGKFP 244 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 +Y VIP ++ + + L + + R +I++S + + V+L++ L + +N + +A Sbjct: 245 DYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASNNAEQEEA 304 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ +++ Y ++I FN YL++ + N+S D V Sbjct: 305 VDELDIDYGGDSIEIGFNVTYLIDALSNMSQDMV 338 >gi|254496739|ref|ZP_05109598.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12] gi|254354034|gb|EET12710.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12] Length = 367 Score = 169 bits (429), Expect = 5e-40, Method: Compositional matrix adjust. Identities = 114/388 (29%), Positives = 205/388 (52%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 + T+++ D+L L +++K ++ + + L + D LL I A+ EIEI+ + Sbjct: 2 FEFTIKKEDLLTPLLTVAGAVDKKQSLAILSNFLFKIADNLLFITATDLEIEISAQVACE 61 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S + G+ITV A DI+R L D A + +N + T I G S+F L + P +P Sbjct: 62 SRNTTGAITVPAKKFIDIIRSLDDQASPNLVFDNGILT---IKQGRSSFKLTTLPAEGYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +++E + VL L++ THFAM+ +++R +LNG+F ++ E + AVATDGH Sbjct: 119 LSEDECNDVELSIPRLVLLQLLQATHFAMSQQDVRVFLNGLF--LDFEPNIISAVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A++ + I+ +++P+K V E+LR+L+ D VSL+ + H + S Sbjct: 177 RMAISRYQ-CSHISD-KKLLLPKKGVQELLRLLNCIDDE-NVSLAAGKSHFKLVSSQFVF 233 Query: 240 --RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LI+ FP Y IP + DK++ ++C+ L++A+ R+ I++ + +AV L L L + Sbjct: 234 LSKLIEARFPPYAKAIPRNQDKQIIIDCSVLKRALSRIVILAHEKSKAVMLHLQPGLLTL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + +A+ES+ + I N YLL+++ + D ++ L ++SS+ Sbjct: 294 IANNNEQEEAVESLVAETQGDELKIGLNATYLLDVLSHFG-----DGQIRLSLSQTDSSI 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D N Y++MPM+I Sbjct: 349 LIESLEND---------NYQYIIMPMKI 367 >gi|11320907|gb|AAG33949.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 105/386 (27%), Positives = 207/386 (53%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ S ++ L R + + + P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFKIKNSIFIKNLQKINRFVVKNISFPILENILISITNGILSLTATNLEIELIANIKLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 + GS TVS+ L DI R + + I EN++ +I S++ L + P F Sbjct: 61 KHYIAGSTTVSSRKLLDICRHSLNSSDIQIELCENKM----HIISDKSHYILTTLPSDNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIDSNILKTMIEKTHFSMGKQDVRYYLNGMLLEITNHALYM--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL + + + QI + SII+ RK + E+ ++L+ +++ + + I + IE L+ + Sbjct: 175 YRLGITKTXLKKQIIEFFSIIIARKGIIELYKLLNVSKQLIRILIGTNNIRIYIEQLTFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L++G+FPNY ++ + + +N L+Q++ R +I++ + V++ + ++ + Sbjct: 235 AQLLEGKFPNYDSLFVTKKNNSIILNNILLKQSLLRAAILTHEKFCGVEIYIKKNQFEVL 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I++ ISS + V+ L++SN+S+ Sbjct: 295 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNAISS-----ENVILFLNNSNNSIQ 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +N + YV+M ++ Sbjct: 350 IEA---------ENDTSTIYVVMLLK 366 >gi|253698658|ref|YP_003019847.1| DNA polymerase III subunit beta [Geobacter sp. M21] gi|251773508|gb|ACT16089.1| DNA polymerase III, beta subunit [Geobacter sp. M21] Length = 372 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 113/394 (28%), Positives = 211/394 (53%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ L I+E++NT+P+ + LL+ + L I A+ E+ + + P + Sbjct: 1 MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITVSA LY+IV+++ D +I F K+N+ V I+ G + F + EFP Sbjct: 61 AIREGKITVSAKKLYEIVKEMPD-EEIHFTTKDNDW---VEITCGKARFNIVGLSSEEFP 116 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF---FHINEEDLKLCA 173 KEE ++ + +L +++E+T +A+ +E +Y LNG+F F N E++ L Sbjct: 117 YFPKVKEESFLV---FKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENV-LKM 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATDGHRL+V++ I I S +I P+K + E+ +++ + + + ++ + Sbjct: 173 VATDGHRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEESGEIMLGFMDNSAVIK 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +RLIDGEFP+Y VIP SND+ +++N ++ R++I+SS + + VK+ ++ Sbjct: 233 KGNTVVVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVN 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + ++ NP++G+A E + V Y + FN KYL++++ + EV +L Sbjct: 293 PELVIISSSNPELGEAREEIEVQYEGNSISARFNAKYLIDVLSVMEQ-----REVELKLK 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V ++ ++ V+MPMR+ Sbjct: 348 DELSPVIMKAAAEEE---------FLAVIMPMRL 372 >gi|254246826|ref|ZP_04940147.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184] gi|124871602|gb|EAY63318.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184] Length = 395 Score = 169 bits (428), Expect = 7e-40, Method: Compositional matrix adjust. Identities = 103/366 (28%), Positives = 193/366 (52%), Gaps = 26/366 (7%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---SITVSAHLLYDIVRK 80 ++T+P+ ++L+ N + ++ E++IT A V G + TV+A L DI+R Sbjct: 52 RHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFGVGGDQIATTVAARKLLDILRA 109 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKN 139 + DG Q++ ++ + + G S F LQ+ EFP+ + +++ + + + Sbjct: 110 MPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFPTVAQAKDFGATLTVPQKSFRQ 165 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ HFAMA ++IRYYLNG+ ++ + +L AVATDGHRLA + + + +I Sbjct: 166 LLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGHRLAFSSMKLEGGTFGRQEVI 223 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 VPRK + E+ R+L D +V + +++++ + + +L++G+FP++Q VIP ++ Sbjct: 224 VPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKFPDFQRVIPKAHKN 283 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 + L++++ R +I++S + + V+ ++ +L + N D +A E + + Y Sbjct: 284 TFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTNADQEEAQEELEIAYQGDT 343 Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 +DI FN YLL+++ N+ D V L ++SS I + D YV Sbjct: 344 VDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSALITVPENDEFK---------YV 389 Query: 380 LMPMRI 385 +MPMRI Sbjct: 390 VMPMRI 395 >gi|81251097|gb|ABB69894.1| DNA polymerase III beta chain [Nitrosomonas sp. CNS332] Length = 373 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 32/394 (8%) Query: 1 MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57 MK+T+ D+L + L I+ER++T+P+ +VL+ DG L + + EIE+ T I Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 58 PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114 P ++ GS+ TVS L DI+R L G+ + + EN L I G S F LQ P Sbjct: 61 P-ELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRL----QIVSGKSRFSLQLLP 115 Query: 115 ESEFP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +FP + E SF L +LK ++R AMA +++RYYLNG I ED KL Sbjct: 116 AEDFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLM 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+ D+ Q K +II PRK V E++R L D V V + +I + Sbjct: 174 LVATDTHRLAITSFDLDGQFEKSETII-PRKTVLELIRQLEDSDKPVIVEIYSKKICFHF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290 + ++I G+F +++ IP ++ + +N + A+ R +I+SS ++V L++ Sbjct: 233 SDAVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRSVHLNI 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ KL ++ N + +A E + + Y+ +D FN YL+E+++N+ S + + Sbjct: 293 TNGKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S S++ I D D N +VLMPMR Sbjct: 348 ESMQSAILITLPDDDQFN---------HVLMPMR 372 >gi|157825704|ref|YP_001493424.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford] gi|157799662|gb|ABV74916.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford] Length = 379 Score = 168 bits (426), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 215/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G +TVS L DIVRKL D I +LGT + I + F L + P S FP Sbjct: 62 VVSEGELTVSTKTLNDIVRKLPDSELIL----TDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 TMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + +++ LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEMLLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLVIGFNPQYLEDVLKAVKSDLV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|157964502|ref|YP_001499326.1| DNA polymerase III subunit beta [Rickettsia massiliae MTU5] gi|157844278|gb|ABV84779.1| DNA polymerase III beta chain [Rickettsia massiliae MTU5] Length = 379 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 120/398 (30%), Positives = 214/398 (53%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G TVS L DIVRKL D ++++ G E I + F L + P S FP+ Sbjct: 62 VVSEGEFTVSTKTLNDIVRKLPD-SELTLTDRGTTGLE--IKGKNCKFNLFTLPVSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGHR Sbjct: 119 MDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLS 236 L+++ V + QI +I+P+K+ EIL+I+ + +++ LS ++I E+ Sbjct: 177 LSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTI 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 236 MLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLE 295 Query: 297 MTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 296 ISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---ELY 352 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 353 F--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|323703941|ref|ZP_08115571.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM 574] gi|323531099|gb|EGB21008.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM 574] Length = 365 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 110/345 (31%), Positives = 186/345 (53%), Gaps = 9/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI R ++++ + A R + KN +P+ +L A + LE+ A+ E+ I IPA+ Sbjct: 1 MKIICTRQNLVQGVTTAQRGVSAKNPLPILSGILFIAKNNSLELHATDLEMGIQCTIPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSI + A L +IVR+L D QI ++N I +G S + + EFP Sbjct: 61 VQEEGSIVLPARYLGEIVRRLPDAPIQIDATQDNN----AIIRYGQSEITINGYDAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S + LK ++ + FA +T+E R G+ N L+L VATD H Sbjct: 117 VLPTPQGKGSLSIPEEDLKEILRQVLFATSTDENRPVFTGVLMENNNGCLRL--VATDTH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ E +I I + S+I+P KA+ E+ R++ + D +V +SL ++++ ++E + Sbjct: 175 RLALREENIGNDIEDI-SVIIPGKALNELARVIGAPDRNVTISLGDNQVIFSMEDTRLVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ VIP LR+ L ++V+R S+++ V Q V+L++ +K+ +T Sbjct: 234 RLIEGQFPNYRQVIPRGYKTRLRMRTKELLESVERASLLARVGSQIVRLAIEEEKVIITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 N ++G+ E + V+ + I FN YL++ + I SD + D Sbjct: 294 -NTEVGRIHEEVPVFLDGETTAISFNAVYLIDALRAIGSDNIYLD 337 >gi|67459041|ref|YP_246665.1| DNA polymerase III subunit beta [Rickettsia felis URRWXCal2] gi|75536523|sp|Q4ULS3|DPO3B_RICFE RecName: Full=DNA polymerase III subunit beta gi|67004574|gb|AAY61500.1| DNA polymerase III beta chain [Rickettsia felis URRWXCal2] Length = 379 Score = 168 bits (425), Expect = 1e-39, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 214/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G +TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGELTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 PMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + +++ LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|258544742|ref|ZP_05704976.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC 15826] gi|258520013|gb|EEV88872.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC 15826] Length = 371 Score = 168 bits (425), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/390 (28%), Positives = 193/390 (49%), Gaps = 24/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAI-- 57 MK ++ + LE L I+ RK T P+ H LLQA D L +K G + E+T I Sbjct: 1 MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLK--GTDTEVTLQILL 58 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +V G+ITV A L D+VR L A I E E ++ + S F + + P Sbjct: 59 HELNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKE---QLLVKAAGSLFRIATLPAE 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ E + E S L +++++ F+MA+E++RYYLNG++ +I E+ + AV+T Sbjct: 116 DFPALAEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVST 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRL+ A + ++IVP+K V E++++L V ++L E ++ L + Sbjct: 176 DGHRLSCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYR 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +LIDG FPNY+ V+P + + ++ +++ R ++ R ++L+ L Sbjct: 236 LTSQLIDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQ 295 Query: 297 MTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N + A E++ + + +++ N YL++ I IS D V + +S Sbjct: 296 LAARNLENETADETLEIINPQNLQLEVALNINYLIDAIATISG-----DNVQLHIADGSS 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 351 PCLITSSDDEGVR---------YVIMPMRL 371 >gi|302336551|ref|YP_003801757.1| DNA polymerase III subunit beta [Spirochaeta smaragdinae DSM 11293] gi|301633736|gb|ADK79163.1| DNA polymerase III, beta subunit [Spirochaeta smaragdinae DSM 11293] Length = 367 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/385 (29%), Positives = 205/385 (53%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E++ +L+ + A II +N + + +VLL+A+DG L IKA+ ++ IP Sbjct: 1 MKFTCEKNALLKEISIAQEIISTRNALSILSNVLLEADDGSLTIKATDLKVSFETRIPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV I+R L +G +N + + NF L+S +FP Sbjct: 61 IAAPGSTTVFCDKFLGILRSLPEGDIEVELVDNRVM--IRPLFQKINFQLKSIAGDKFPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E FE+ L ++ +T FA++ +E RYY+NG++ + E + + VATDG R Sbjct: 119 LQEVSEDLYFEIPQKDLIEMIGQTIFAVSDDETRYYMNGVYVEQDGESISM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ + I +++ + ++I+P K + +++R LSS + ++K+++S+ I + + ++ Sbjct: 177 LSLIKRRIESELKEFDAVIIPPKVL-QLIRKLSSGEGNLKIAISDRNIFVQFDDQRITSN 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP S D +L VN L +A+ RVS++ + + V LS+ + + +T + Sbjct: 236 LIEGQFPNYRRVIPDSQDYQLVVNRDQLEEALKRVSLLVEQKSRRVYLSVENAMMRLTSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E ++ Y I NY YL E + + +EVV R +N ++ + Sbjct: 296 ESDIGVAKEELSCSYEGPETTIALNYLYLAEPLKVMRC-----EEVVLRFTEANKAITLE 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + F+++MPM++ Sbjct: 351 PVPEG---------DYFHIIMPMQL 366 >gi|239947309|ref|ZP_04699062.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921585|gb|EER21609.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 379 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 195/355 (54%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G +TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGELTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + +++ LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGIFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ G A E +N Y ++ + I FN +YL +++ + SD V Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV 349 >gi|302341688|ref|YP_003806217.1| DNA polymerase III, subunit beta [Desulfarculus baarsii DSM 2075] gi|301638301|gb|ADK83623.1| DNA polymerase III, beta subunit [Desulfarculus baarsii DSM 2075] Length = 370 Score = 167 bits (424), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 208/389 (53%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T + D+ L + ++E++ ++P+ +VLL+A DG L + A+ EI G++ A Sbjct: 1 MELTARKEDLARNLQKSQSVVEKRTSMPILSNVLLEAADGGLTVTATDLEISFQGSLEAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G +TV A Y+I+++L + + KE E ++++ G +++ L +++P+ Sbjct: 61 VNKPGRVTVPARKFYEIIKELP--SDDVYLKEKE-NQHIHLTGGRASYDLVGLSAADYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + E+ VL ++E+T F+++ E+ R+ L G+F D + L V+TDG Sbjct: 118 LPDIADLSCLEVDGDVLGEMIEKTIFSISQEDTRFNLAGLFVQKRRRDDREILRMVSTDG 177 Query: 179 HRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++ + +I +A + +I+PRK V E+ R+ ++D + + L+ S + + + Sbjct: 178 HRLSLIDREIPGLAALDIAGGVIIPRKGVAEMRRL--AEDGGLSLGLNASFAVVKKDGAT 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +R+ +G FP+Y+ V+P + + VN + + RVSI+++ R Q V+LS L Sbjct: 236 LILRMQEGSFPDYEVVVPKNAGRVALVNRQAFGEVIRRVSILATDRFQGVQLSFKEGLLE 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + NPD+G+A E++ V Y + FN +Y L++ + S EV+ V N+ Sbjct: 296 LISQNPDLGEARETIEVDYEGESFTVGFNARYFLDLCGAMRS-EVISLAFV----DENNP 350 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+G+ + V+MPMR+ Sbjct: 351 CLIKGEGDE---------GFLSVIMPMRL 370 >gi|157827170|ref|YP_001496234.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389] gi|157802474|gb|ABV79197.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389] Length = 379 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 116/379 (30%), Positives = 204/379 (53%), Gaps = 27/379 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N I ++ L A DGLLE+ ++ ++ ++ I Sbjct: 2 LKVIVETKTLVQALGFASSVVEKRNVISELANIKLSAKDGLLELSSTNMDLYLSQKIGVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G +TVS L DIV+KL D S +LGT + I+ + F L + P FP Sbjct: 62 VVSEGELTVSTKTLNDIVKKLPD----SELTLTDLGTTGLEITGKNCRFNLFTLPVESFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+++ + ++E T F+++ +E RY LNGI+ H+ +D + A +TDGH Sbjct: 118 VMDNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHV--KDSEFYAASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL---SSKDSSVKVSLSESRIHLNI-ESL 235 RL+V+ V + +I +I+P+K+ EIL+I+ + ++ +++ LS ++I E++ Sbjct: 176 RLSVSSVVLAEKIEDF-GVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y + IP ++ +L +N ++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEAL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV----- 341 ++ G A E +N Y E +DI FN +YL +++ I SD V Sbjct: 295 EISAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFS 354 Query: 342 -VDDEVVFRLDSSNSSVFI 359 V V+ + S +F+ Sbjct: 355 SVSAPVLIKFPESPKDIFV 373 >gi|148651820|ref|YP_001278913.1| DNA polymerase III subunit beta [Psychrobacter sp. PRwf-1] gi|148570904|gb|ABQ92963.1| DNA polymerase III, beta subunit [Psychrobacter sp. PRwf-1] Length = 391 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 117/411 (28%), Positives = 211/411 (51%), Gaps = 46/411 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ R +L+ + + ++++ + V ++ L+ + LL + AS E+E++ + Sbjct: 1 MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAQVKLG 60 Query: 61 VDVCGSI---TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 GSI T+ A L++I + L I+ E+ I+ G S F L + P ++ Sbjct: 61 NGATGSIGATTLPASKLHEICKLLPKDTMINLAAESN--ERCVINSGKSRFVLGTLPAAD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + L+ +VL +L+ +T FAMA +++RYYL G+ F +++ +L VATD Sbjct: 119 FPILGNPANITPLTLSRNVLMDLMAKTQFAMAIQDVRYYLTGMLFEVSQR--QLTTVATD 176 Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSESRIH 229 GHRLA+A I VA M +I+ PRKAV E+ +++ D ++ +S + Sbjct: 177 GHRLALARSVIEVADDFSMQAIL-PRKAVIELERLANELGKLVGGNDGNLTLSFGREFLQ 235 Query: 230 L-----NIES---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 + N++S ++ + RLIDG+FP+Y+ V+P + DK N + + RV Sbjct: 236 VSLPFGNVDSTGQIDDSVRVTFTARLIDGKFPDYRRVMPNNTDKIALANKEQMTDVLRRV 295 Query: 276 SIMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 SI+S+ + + V S D + + +N + +A+E++ V Y P+++ FN YL +++D Sbjct: 296 SILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVKYQGAPIELSFNAAYLQDVLD 355 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D V + +NSSV + N+ N YV+MPMRI Sbjct: 356 VLGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391 >gi|25452934|sp|Q9EVE4|DPO3B_BUCRP RecName: Full=DNA polymerase III subunit beta gi|11320921|gb|AAG33956.1|AF197896_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 167 bits (423), Expect = 2e-39, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 215/386 (55%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++ ++E L R++ + + P+ ++L+Q +G+L + + EIE+ I Sbjct: 1 MKFTIQNDILVENLKKITRLLIKNVSFPILENILIQIENGILSLTTTNLEIELVSKIKII 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 G IT+S + +I R L + +++ KE ++ +S +SN+ L + +F Sbjct: 61 TKYTPGKITISGRKILNICRNLSEKSEVKMPLKEKKMY----VSCENSNYILSTLSADDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + ++ +F ++S++LK ++E+T F+M +++RYYLNG+ ++D L +VATDG Sbjct: 117 PNHQNFNHISNFHISSNILKEMIEKTEFSMGKQDVRYYLNGMLLE--KKDNFLRSVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA++ + I SII+P KAV E+ R+L+++ + + + + I + I+ L + Sbjct: 175 YRLAISYSKLEKDI-NFFSIIIPSKAVMELSRLLNTQVQLLNILIGTNSIRIYIKDLIFT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+GE+P+Y++V+ + NCT L++++ R +I++ + +++ + +K + Sbjct: 234 TQLIEGEYPDYESVLFKEKKNPIIANCTLLKKSLLRAAILAHEKFCGIEIKIEKNKFKVL 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A + ++ Y ++I N YLL++I+NI S + ++ L+ S SS+ Sbjct: 294 SDNQEEETAEDLFDINYLGDTIEISINVYYLLDVINNIKS-----ENIILFLNKSKSSIQ 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I ++N +NA+ +++ R Sbjct: 349 IEA--------ENNSLNAYIIMLLKR 366 >gi|332968622|gb|EGK07676.1| DNA-directed DNA polymerase III beta subunit [Kingella kingae ATCC 23330] Length = 367 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 109/384 (28%), Positives = 206/384 (53%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R ++L+ + I+ERK+T+P+ +VLL+++ G + + A+ EI+I S Sbjct: 4 LETQRDNLLKPIQAVTGIVERKHTLPILANVLLESHAGKIRVLATDLEIQIHTQGAESEH 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 +T +A L DI++ L D A + + + + G S F LQ+ P +FP+ Sbjct: 64 GDFRLTTNAKKLQDILKALPDSANVQLDWADH---RLTLKSGKSRFNLQTLPAEDFPTMN 120 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + +F L LK+++ + ++MA ++IR+YLNG+ + L+L VATDGHRL Sbjct: 121 VGDTTTAAFALPQETLKHMISQVQYSMAVQDIRFYLNGLLLQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I + K +I+PRK V E ++L+ + + L + ++ L + ++ Sbjct: 179 AFASTTIDTDLPKQ-DVILPRKTVLEWNKLLNQPKENAVIELLDKQVRLRCNDTVVVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP+Y VIP N++ + +N L A++R SI+++ + + V+L LS+ L ++ N Sbjct: 238 IDGKFPDYNRVIPMDNNRIVVLNRLALLGALERSSILANEKFRGVRLQLSAGSLRVSCTN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A+E + + Y ++ FN +LL+++ +S ++V ++ F ++ S++F Sbjct: 298 NEQEEAVEELELAYQGESLETSFNISFLLDMLRALSDEDV---QIAFG-TATQSTLFTLP 353 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 + + K YV MPMR+ Sbjct: 354 EQPNFK----------YVAMPMRL 367 >gi|238650892|ref|YP_002916748.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic] gi|238624990|gb|ACR47696.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic] Length = 379 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 122/399 (30%), Positives = 214/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI II+P+K+ EIL+I+ + +++ L+ ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GIILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGTFPDYSTFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|157828455|ref|YP_001494697.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933170|ref|YP_001649959.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. Iowa] gi|157800936|gb|ABV76189.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908257|gb|ABY72553.1| DNA polymerase III, beta chain [Rickettsia rickettsii str. Iowa] Length = 379 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 121/399 (30%), Positives = 214/399 (53%), Gaps = 35/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G TVS L DIVRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + C+ +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + +++ L+ ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E +N Y ++ + I FN +YL +++ + SD V E+ Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ V I+ + N KD +V+MP+++ Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379 >gi|6606556|gb|AAF19207.1|AF213932_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 167 bits (423), Expect = 3e-39, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 215/385 (55%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ ++ L R+I + +T+P+ ++L+ N+G++ + + E E+ I S Sbjct: 1 MKFNIKNKIFIQHLKKVNRLISKNSTLPILENILITVNNGIISLTTTNLETELISNIETS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I R + ++I + +++I+ +SN+ L + P FP Sbjct: 61 KTHTPGSITVSGQKLLNICRNSSESSEIKISLNED---KMHIASDNSNYILTTLPSENFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++ F ++S +LK ++E+T F+M +++RYYLNG+ N+ L AVATDG+ Sbjct: 118 NHNKFHHISEFFISSDILKKMIEQTQFSMGKQDVRYYLNGMLLEKNKTSL--YAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + + + S+I+PRK + E+ ++L+ + + V + ++ I ++IE L +V Sbjct: 176 RLGITKTFLKEDVF-IFSVIIPRKGIIELHKLLNIEPQLIHVLIGKNNIRIHIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++++ + + +N L+Q++ RV+++S V++ ++++K + Sbjct: 235 QLIEGEYPDYKSILLRKKNHSIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N D KA +S + Y ++I N Y++E++ I+S + ++ SN+S+ I Sbjct: 295 NNQDEEKAEDSFKINYCGDDIEISINVYYIIEVLSVITS-----KNIFMFINESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +S + YV+M +R Sbjct: 350 ESEEDNS---------SLYVIMLLR 365 >gi|224458008|ref|ZP_03666481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254875663|ref|ZP_05248373.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|254841662|gb|EET20098.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] Length = 329 Score = 167 bits (422), Expect = 4e-39, Method: Compositional matrix adjust. Identities = 101/326 (30%), Positives = 187/326 (57%), Gaps = 11/326 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + + ++A +Y+IVR L + + I F + NE +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPL 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 S E+ SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TD Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDI 322 ++ +NPD KA + + V YN+ PM+I Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEI 319 >gi|320109372|ref|YP_004184962.1| DNA polymerase III subunit beta [Terriglobus saanensis SP1PR4] gi|319927893|gb|ADV84968.1| DNA polymerase III, beta subunit [Terriglobus saanensis SP1PR4] Length = 397 Score = 166 bits (420), Expect = 5e-39, Method: Compositional matrix adjust. Identities = 118/393 (30%), Positives = 209/393 (53%), Gaps = 23/393 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ITV RS++L L A ++ERK TIP+ + L +A++ L I A+ + + + A Sbjct: 20 LEITVSRSELLRELTAAQSVVERKTTIPILSNFLFEADEDRLTITATDLDQSLRTSCAAK 79 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T+ A LYD ++ L DG +N V I G SN + + FP Sbjct: 80 VKKPGACTIPARKLYDYIKLLPDGEISIKLMDNHW---VQIRAGRSNTKMVGMARANFPQ 136 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S ++A L++++ +T F++++EE RY LNG + E + + VATDGHR Sbjct: 137 VAEFPTTGSIKIAVPALRSMIAKTIFSISSEESRYTLNGALLVLKAESMAM--VATDGHR 194 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNI 232 LA E + +A ++ ++PRKA+GE+ +L++ +++ V+ + ++ + I Sbjct: 195 LAHIERLGENLAGVSGEKKTLIPRKALGELSSLLANSNAATEEEDYVEFADDDTTLFFRI 254 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ R + G+FPNY+ V+P N+K + V +L A+ RV+ + R AVK+ L Sbjct: 255 GGRVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMGALQRVAQFADERSGAVKIRLEQ 314 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++L ++ + D G++ + + YN P+ + FN +YL++ + I + EV Sbjct: 315 NELRISSSSTDSGESEDIIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKD 370 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+ +R +D +N+D K Y+LMPMRI Sbjct: 371 AQSAGQMRPED----SNEDQKYR--YILMPMRI 397 >gi|332976003|gb|EGK12874.1| DNA-directed DNA polymerase III beta subunit [Psychrobacter sp. 1501(2011)] Length = 391 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 117/412 (28%), Positives = 211/412 (51%), Gaps = 48/412 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M++++ R +L+ + + ++++ + V ++ L+ + LL + AS E+E++ + Sbjct: 1 MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAEVKLG 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPES 116 + V G+ T+ A L++I + L ++F E NE I+ G S F L + P + Sbjct: 61 NGATGVVGATTLPASKLHEICKLLPKDTMVNFSAEANE---RCVITSGKSRFVLGTLPAA 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP + L+ +VL +L+ +T FAMA +++RYYL G+ F + + +L VAT Sbjct: 118 DFPVLGTPANITPLTLSRAVLMDLMAKTQFAMAIQDVRYYLTGMLFEVAQR--QLTTVAT 175 Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSESRI 228 DGHRLA+A I VA M +I+ PRKAV E+ +++ D ++ + + Sbjct: 176 DGHRLALARSVIDVADDFTMQAIL-PRKAVIELERLGNELGKLVGDNDGNLTLVFGREFL 234 Query: 229 HL-----NIES---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 + N+ S ++ + RLIDG+FP+Y+ V+P S +K N + + R Sbjct: 235 QVTLPFGNVNSTGQIDDAIKVTFTARLIDGKFPDYRRVMPASTNKVALANKDQMTDVLRR 294 Query: 275 VSIMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 VSI+S+ + + V S D + + +N + +A+E++ V Y P+++ FN YL +++ Sbjct: 295 VSILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVNYQGEPIELSFNAAYLQDVL 354 Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + D V + +NSSV + N+ N YV+MPMRI Sbjct: 355 DVLGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391 >gi|11320917|gb|AAG33954.1|AF197894_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 207/364 (56%), Gaps = 11/364 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ L R + + NT P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFNIKNNILIHNLQKINRFVTKNNTFPILENILISIKNGILSLTATNLEIELISNITLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS T+S+ L DI R + +S + G +++I S + L + + FP Sbjct: 61 THYIPGSTTISSRKLLDICR---NSLNLSDIQIQLNGNKIHIISDKSKYILTTLSSNNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + K ++ F + S++++ ++E+THF+M +++RYYLNG+ + D L +ATDG+ Sbjct: 118 NHKNFHHIAEFFINSNIIREMIEKTHFSMGKQDVRYYLNGMLLE--KIDDSLNMIATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + + SII+ RK + E+ ++L+ + +K+ +++S I + IE + Sbjct: 176 RLGISKTILQEKKISSFSIIITRKGITELYKLLNIPNQKIKILIAKSHIRIYIEQFIFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FPNY++V+ + + +N L+Q++ RVSI+S + V++ + + + Sbjct: 236 QLIEGQFPNYESVLFQQKNNGIILNSKLLKQSLMRVSILSHEKFCGVEIYIRDNTFKVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + ++ Y ++I N Y+L+I+++I+S+ + ++F L++SN+S+ I Sbjct: 296 DNQEEEIAEDMFDINYIGPVIEISINVYYILDILNSINSENI----LIF-LNNSNNSIQI 350 Query: 360 RGKD 363 + ++ Sbjct: 351 KAEN 354 >gi|81251101|gb|ABB69897.1| DNA polymerase III beta chain [Nitrosomonas sp. IWT310] Length = 373 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 129/394 (32%), Positives = 204/394 (51%), Gaps = 32/394 (8%) Query: 1 MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57 MK+T+ D+L + L I+ER++T+P+ +VL+ DG L + + EIE+ T I Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 58 PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114 P ++ GS+ TVS L DI+R L G+ + + EN L I G S F LQ P Sbjct: 61 P-ELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRL----QIVSGKSRFSLQLLP 115 Query: 115 ESEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +FP E SF L +LK ++R AMA +++RYYLNG I ED KL Sbjct: 116 AEDFPRMVRDNERCDTSFTLTQQMLKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLM 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+ D+ Q K +II PRK V E++R L D V V + +I + Sbjct: 174 LVATDTHRLAITSFDLDGQFEKSETII-PRKTVLELIRQLEDSDKPVIVEIYSKKICFHF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290 + ++I G+F +++ IP ++ + +N + A+ R +I+SS + V L++ Sbjct: 233 SDAVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNI 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ KL ++ N + +A E + + Y+ +D FN YL+E+++N+ S + + Sbjct: 293 TNGKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S S++ I D D N +VLMPMR Sbjct: 348 ESMQSAILITLPDDDQFN---------HVLMPMR 372 >gi|114330038|ref|YP_746260.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91] gi|114307052|gb|ABI58295.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91] Length = 373 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 128/394 (32%), Positives = 205/394 (52%), Gaps = 32/394 (8%) Query: 1 MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57 MK+T+ D+L + L I+ER++T+P+ +VL+ DG L + + EIE+ T I Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 58 PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114 P ++ GS+ TVS L DI+R L G+ + + EN L I G S F LQ P Sbjct: 61 P-ELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRL----QIVSGKSRFSLQLLP 115 Query: 115 ESEFP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +FP + E SF L +LK ++R AMA +++RYYLNG I ED KL Sbjct: 116 AEDFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLM 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+ D+ Q K +II PRK V E++R L D V V + +I + Sbjct: 174 LVATDTHRLAITSFDLDGQFEKSETII-PRKTVLELIRQLEDSDKPVIVEIYSKKICFHF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290 + ++I G+F +++ IP ++ + +N + A+ R +I+SS + V L++ Sbjct: 233 SDAVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNI 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ KL ++ N + +A E + + Y+ +D FN YL+E+++N+ S + + Sbjct: 293 TNGKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ S++ I D D N +VLMPMR Sbjct: 348 ENMQSAILITLPDDDQFN---------HVLMPMR 372 >gi|91205471|ref|YP_537826.1| DNA polymerase III subunit beta [Rickettsia bellii RML369-C] gi|122990918|sp|Q1RIS7|DPO3B_RICBR RecName: Full=DNA polymerase III subunit beta gi|91069015|gb|ABE04737.1| DNA polymerase III beta chain [Rickettsia bellii RML369-C] Length = 379 Score = 166 bits (420), Expect = 6e-39, Method: Compositional matrix adjust. Identities = 116/379 (30%), Positives = 204/379 (53%), Gaps = 27/379 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N I ++ L A DGLLE+ ++ ++ ++ I Sbjct: 2 LKVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKIGVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G +TVS L DIV+KL D S +LGT + I+ + F L + P FP Sbjct: 62 VVSEGELTVSTKTLNDIVKKLPD----SELTLTDLGTTGLEITGKNCRFNLFTLPVESFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+++ + ++E T F+++ +E RY LNGI+ H+ +D + A +TDGH Sbjct: 118 VMDNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHV--KDSEFYAASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL---SSKDSSVKVSLSESRIHLNI-ESL 235 RL+V+ V + +I +I+P+K+ EIL+I+ + ++ +++ LS ++I E++ Sbjct: 176 RLSVSSVVLAEKIEDF-GVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y + IP ++ +L +N ++R++I++ + +AVKLSLS + L Sbjct: 235 IMLSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEAL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV----- 341 ++ G A E +N Y E +DI FN +YL +++ I SD V Sbjct: 295 EISAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFS 354 Query: 342 -VDDEVVFRLDSSNSSVFI 359 V V+ + S +F+ Sbjct: 355 SVSAPVLIKFPESPKDIFV 373 >gi|15616641|ref|NP_239853.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132241|sp|P57127|DPO3B_BUCAI RecName: Full=DNA polymerase III subunit beta gi|25288588|pir||C84931 DNA-directed DNA polymerase (EC 2.7.7.7) beta chain [imported] - Buchnera sp. (strain APS) gi|10038704|dbj|BAB12739.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 366 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 101/368 (27%), Positives = 203/368 (55%), Gaps = 21/368 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76 R++ + ++P+ +VL+ +G+L + + EIE+ I S + + G+ T+S L D Sbjct: 18 SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRKLLD 77 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I R + + I N +++I G+S + L + P FP + ++ F + S + Sbjct: 78 ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK ++E+ F+MA +++RYYLNGI + + D L AVATDG+RL +++ + I Sbjct: 135 LKKMIEKIQFSMAKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 SI++PRK V E+ R+L+ +KV + ++ I ++IE L + +LI+G++P+Y++V+ + Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + + +N L+Q++ R +I+S + V++ + + + + DN + A + N+ Y Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I N Y++EI+++I+S + + L+++N+S+ I +N + Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357 Query: 377 FYVLMPMR 384 YV+M ++ Sbjct: 358 LYVVMLLK 365 >gi|223935962|ref|ZP_03627876.1| DNA polymerase III, beta subunit [bacterium Ellin514] gi|223895184|gb|EEF61631.1| DNA polymerase III, beta subunit [bacterium Ellin514] Length = 369 Score = 166 bits (419), Expect = 7e-39, Method: Compositional matrix adjust. Identities = 114/393 (29%), Positives = 204/393 (51%), Gaps = 33/393 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T+ + ++ L ++ + T+P+ +VL++A LE A+ ++ I+ + A+ Sbjct: 1 MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TV L+ IVR+L + +I ++N +I G S + + EFP Sbjct: 61 VKEGGATTVPVKKLFGIVRELNNPEIEIEVDEKNT----CSIRSGSSFYKINGLSADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + L +K ++++T FA++T+E RY LNGIF + E KL VATDG Sbjct: 117 PLPKFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEH--KLTMVATDGR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-----S 234 RLA+ + ++ IVP KAV E+ R+L+ K V++ SE++ ++ S Sbjct: 175 RLALVDEEVDVTEKSQGEFIVPAKAVNELNRLLTDK-GEVEIRYSENQAAFTLKDEKGFS 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +LI+G +PNY+ VIP + + + A+ R IM+S + +VKL+ S + Sbjct: 234 ILIISKLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNN 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T ++P++G+A ES+ + Y M I FN KY+++ ++ +S+DE+ + +D + Sbjct: 294 LAITANSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALSNDEIFLE----LIDELS 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNA--FYVLMPMRI 385 V K+N YV+MPMR+ Sbjct: 350 PGVV--------------KINGPFLYVVMPMRL 368 >gi|30248033|ref|NP_840103.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718] gi|30179918|emb|CAD83913.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718] Length = 373 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 124/394 (31%), Positives = 204/394 (51%), Gaps = 32/394 (8%) Query: 1 MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57 MK+T+ D+L + L I+ER++T+P+ + L++ +G L + + EIE T I Sbjct: 1 MKLTITDRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGQLTLVTTDLEIEAEATSNI 60 Query: 58 PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114 P ++ G++ TVS L DI+R L GA I + EN L I G S F LQ P Sbjct: 61 P-ELENQGALQTTVSVRKLQDILRALPSGAAIELTRSENRL----QIVSGKSRFSLQLLP 115 Query: 115 ESEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +FP E ++ LA VLK ++R AMA +++RYYLNG+ I ED KL Sbjct: 116 AEDFPRMIRDSEPCSATYTLAQRVLKKHLQRVAHAMAQQDLRYYLNGMLLLI--EDNKLT 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRL + +D+ K +I VPRK V E++R L D V V + ++ Sbjct: 174 LVATDTHRLGITSIDLDGNFEKSETI-VPRKTVLELIRQLEDSDKPVIVEIYPKKVCFRF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290 + ++I G+F +++ IP ++ + VN + A+ R +I+SS + V L++ Sbjct: 233 SDAVLVSKVISGKFLDFRRAIPQTSVFQFDVNRLDFLHALQRTAIISSSNDLFRNVHLNI 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ KL ++ N + +A E +++ Y+ +D FN YL+E+++N+ S +++ Sbjct: 293 TNGKLNISAKNKEQEEAQEEIDIVYSNETIDTSFNIVYLMEVLNNLDS-----EQIRCSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S S++ I D + +VLMPMR Sbjct: 348 ESMQSAILITLPDDEQFK---------HVLMPMR 372 >gi|21672305|ref|NP_660372.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|232008|sp|P29439|DPO3B_BUCAP RecName: Full=DNA polymerase III subunit beta gi|144150|gb|AAA73150.1| dnaN [Buchnera aphidicola] gi|2827015|gb|AAC38107.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|21622904|gb|AAM67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 366 Score = 165 bits (418), Expect = 9e-39, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 211/385 (54%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++ + + L R++ + + P+ ++L+Q DG L + + EIE+ I Sbjct: 1 MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+S + +I R L + ++I +N+ ++ IS +SN+ L + FP Sbjct: 61 TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNK---KMYISSENSNYILSTLSADTFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + +Y+ F+++S++LK ++E+T F+M +++RYYLNG+ ++D L +VATDG+ Sbjct: 118 NHQNFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLE--KKDKFLRSVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + I SII+P KAV E+L++L+++ + + + + I + ++L + Sbjct: 176 RLAISYTQLKKDI-NFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++V+ + N L++++ RV+I++ + +++ + + K + Sbjct: 235 QLIEGEYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + + Y ++I N YLL++I+NI S + + L+ S SS+ I Sbjct: 295 DNQEEETAEDLFEIDYFGEKIEISINVYYLLDVINNIKS-----ENIALFLNKSKSSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ S NA+ V++ R Sbjct: 350 EAENNSS--------NAYVVMLLKR 366 >gi|219681400|ref|YP_002467785.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471073|ref|ZP_05635072.1| DNA polymerase III beta chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624243|gb|ACL30398.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 366 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 202/368 (54%), Gaps = 21/368 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76 R++ + ++P+ +VL+ +G+L + + EIE+ I S + + G+ T+S L D Sbjct: 18 SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVATIQLSTEHISGTATISGRKLLD 77 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I R + + I N +++I G+S + L + P FP + ++ F + S + Sbjct: 78 ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK ++E+ F+M +++RYYLNGI + + D L AVATDG+RL +++ + I Sbjct: 135 LKKMIEKIQFSMGKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 SI++PRK V E+ R+L+ +KV + ++ I ++IE L + +LI+G++P+Y++V+ + Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + + +N L+Q++ R +I+S + V++ + + + + DN + A + N+ Y Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I N Y++EI+++I+S + + L+++N+S+ I +N + Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357 Query: 377 FYVLMPMR 384 YV+M ++ Sbjct: 358 LYVVMLLK 365 >gi|162456447|ref|YP_001618814.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56'] gi|161167029|emb|CAN98334.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56'] Length = 376 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 106/391 (27%), Positives = 190/391 (48%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + D+L L+ + ++K+ +P +VLL A + + A+ + +TG A Sbjct: 1 MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTGQTHAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V A L + V+ + DG I T + + L P SEFP Sbjct: 61 IKTGGTVAVPARDLLERVKAMPDG-PIQITTTEGAHTSLKAVGSPRRYTLPGLPGSEFPQ 119 Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S EL L L+ RTHF+++T+E R ++N F + +++ V TDGH Sbjct: 120 LPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGDRVRM--VTTDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSS-VKVSLSESRIHLNIES 234 RL+ E + A ++++P KA+ E+ R+ + K++ V ++ S NI Sbjct: 178 RLSKMEATVSGSSATA-TMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIAG 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + SV+L+D +FP YQ VIP ++ +R +A+ +++ ++ R VKLS++ Sbjct: 237 MQFSVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPGT 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T ++PD G + + V Y+ + I FN KY L+++ +I D+EV+ + Sbjct: 297 LRITSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASID-----DEEVILGISGEL 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR ++ N+ + V+MPMRI Sbjct: 352 DPAVIR------PGSESNQQSYVAVIMPMRI 376 >gi|311087504|gb|ADP67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 366 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 202/368 (54%), Gaps = 21/368 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76 R++ + ++P+ +VL+ +G+L + + EIE+ I S + + G+ T+S L D Sbjct: 18 SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTTTISGRKLLD 77 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I R + + I N +++I G+S + L + P FP + ++ F + S + Sbjct: 78 ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK ++E+ F+M +++RYYLNGI + + D L AVATDG+RL +++ + I Sbjct: 135 LKKMIEKIQFSMGKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 SI++PRK V E+ R+L+ +KV + ++ I ++IE L + +LI+G++P+Y++V+ + Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + + +N L+Q++ R +I+S + V++ + + + + DN + A + N+ Y Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I N Y++EI+++I+S + + L+++N+S+ I +N + Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357 Query: 377 FYVLMPMR 384 YV+M ++ Sbjct: 358 LYVVMLLK 365 >gi|11320901|gb|AAG33946.1|AF197886_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 201/368 (54%), Gaps = 13/368 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R+I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRLITKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 + G+ TVS+ L DI R + + ++ EL +++I S + L++ P F Sbjct: 61 KHYISGNTTVSSRKLLDICRHSLNTSNMNI----ELNANKIHIISNTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S+VLK ++E+THF+M +++RYYLNG+ + L + VATDG Sbjct: 117 PNHNHFHHISEFYIDSNVLKEMIEKTHFSMGKQDVRYYLNGMLLKMINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL++ + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 175 YRLSITHTILKKQQIESFSIIMTRKGIIELYKLLNISKQLIKILIGKNSIRIYIEQLVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FPNY ++ + + +NCT L+Q++ R +I++ + V++ + +++ + Sbjct: 235 AQLIEGIFPNYDSLFLNKTNNGIILNCTLLKQSLLRTAILTHEKFCGVEIHIKNNQFTVL 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+++++ISS ++ L++SN+S+ Sbjct: 295 SDNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISS-----QNIILFLNNSNNSIQ 349 Query: 359 IRGKDKDS 366 I ++ S Sbjct: 350 IEAENDTS 357 >gi|121607006|ref|YP_994813.1| DNA polymerase III subunit beta [Verminephrobacter eiseniae EF01-2] gi|121551646|gb|ABM55795.1| DNA polymerase III, beta subunit [Verminephrobacter eiseniae EF01-2] Length = 372 Score = 165 bits (417), Expect = 1e-38, Method: Compositional matrix adjust. Identities = 112/383 (29%), Positives = 195/383 (50%), Gaps = 28/383 (7%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPASVDVCGSI 67 +L L I+ER++T+P+ +VL++ L++ S EI+I T + C + Sbjct: 11 VLAALQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGECMT- 69 Query: 68 TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-Y 126 T+S L DI+R + +S + + + + G S F L S P +FP +E + Sbjct: 70 TMSVRKLIDILRTMPGEQTVSLESDQ---SRLILKAGKSRFTLHSLPGQDFPLVQESAAF 126 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 F + LK+L+ + F MA ++IRYYLNGI F + L L +ATDGHRLA A Sbjct: 127 GPVFSVPQKTLKSLLGQVSFTMAVQDIRYYLNGILFVAEGQTLSL--IATDGHRLAFACA 184 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLI 242 + Q+ K +I+PRK V E+ R+LS D +++ + ++ + +L+ Sbjct: 185 TLDVQVPKQ-EVILPRKTVLELQRLLSDADGDNRPHIEMQFASNQAKFTFGGMEFVTKLV 243 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 +G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L+L L + N Sbjct: 244 EGKFPDYNRVIPKNHHNCVTLGRAALLTSLQRTAIMTSDKFKGVRLNLEPGALRVASSNA 303 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + +A++ ++V Y ++I FN YL++ + N+ D V ++ F +S++ + I Sbjct: 304 EQEEAVDELDVDYAGDNIEIGFNVTYLIDALANMEQDMV---QLAFADGNSSALLTIPAN 360 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 D N YV+MPMRI Sbjct: 361 D-----------NFKYVVMPMRI 372 >gi|219681956|ref|YP_002468340.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621689|gb|ACL29845.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085761|gb|ADP65843.1| DNA polymerase III beta chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086338|gb|ADP66419.1| DNA polymerase III beta chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086913|gb|ADP66993.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 366 Score = 164 bits (416), Expect = 2e-38, Method: Compositional matrix adjust. Identities = 100/368 (27%), Positives = 202/368 (54%), Gaps = 21/368 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76 R++ + ++P+ +VL+ +G+L + + EIE+ I S + + G+ T+S L D Sbjct: 18 SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRKLLD 77 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I R + + I N +++I G+S + L + P FP + ++ F + S + Sbjct: 78 ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK ++E+ F+M +++RYYLNGI + + D L AVATDG+RL +++ + I Sbjct: 135 LKKMIEKIQFSMGKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 SI++PRK V E+ R+L+ +KV + ++ I ++IE L + +LI+G++P+Y++V+ + Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + + +N L+Q++ R +I+S + V++ + + + + DN + A + N+ Y Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I N Y++EI+++I+S + + L+++N+S+ I +N + Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357 Query: 377 FYVLMPMR 384 YV+M ++ Sbjct: 358 LYVVMLLK 365 >gi|148244171|ref|YP_001218865.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius okutanii HA] gi|146325998|dbj|BAF61141.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 367 Score = 163 bits (413), Expect = 3e-38, Method: Compositional matrix adjust. Identities = 107/386 (27%), Positives = 198/386 (51%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++LE L +IE+K T+P+ HVL+Q + LL + + EIEI + Sbjct: 1 MNIQLRVKELLEPLQTVISVIEKKQTLPILAHVLIQLENNLLTLTTTDMEIEIKTSQIIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S TV A L +I++KL + I F N +++ I ++F L +F +FPS Sbjct: 61 NKEEISFTVYAKDLINIIKKLPENTIIKFIINN---SKIYIKVNKNSFELNTFRHQDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + +LKNL+E+T F+M ++IR YLNG++F IN+ + + V TDGHR Sbjct: 118 LPKIKNKKNITIKRKILKNLIEKTSFSMGNQDIRAYLNGLYFEINKNN--IVVVTTDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 L++ ++ ++I+PRK++ E ++L+ + V + S + +L+ + ++ Sbjct: 176 LSIGKIKQANNSLNKKTVILPRKSIIEFTKLLNKNEHEEVNIYTSNNYFYLSTNNTTIIS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FPNY VIP + + +N + ++ + SI + VKL + +L + Sbjct: 236 KLINSKFPNYLPVIPTDFNNTIIINRLDFLNSLQQASIFVEEHTKGVKLIFKNSQLYI-F 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G+A + ++I FN YL+ I++ ++++E+ + + Sbjct: 295 SNSERGQAKTQIKTKNFNKKIEIAFNINYLISILEKLNTNEI-------------NMIIP 341 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 GK+K N N Y++MPMR+ Sbjct: 342 NGKNKSCLLNSINDDIYQYIVMPMRL 367 >gi|206891136|ref|YP_002247870.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743074|gb|ACI22131.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 368 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 103/342 (30%), Positives = 180/342 (52%), Gaps = 9/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ I E L I+E+K+ +PV H L+ + + I A+ E + + A Sbjct: 1 MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLETAVKQPLEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + A Y+IV++L + +I ++ + I G SNF L S SEFP Sbjct: 61 VLEIGKACIPARKFYEIVKELDEDIEIMLLEQ-----WIKIQSGRSNFRLASLDPSEFPV 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L+ L +E+T +A + RY LNG+ F I +E + V TDGHR Sbjct: 116 WPQIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQI-KEPAEFNVVGTDGHR 174 Query: 181 LA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA A V+ ++ I +I+ +K++ E+ + LS ++ V + + ++ + I+ ++ Sbjct: 175 LAHFKATVEDISSIEGEKKVILSKKSLNELRKFLSDTET-VSIHIGKTHVMCEIDGINFL 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I+G +P+Y+ VIP NDK V+ +L ++ RVS++S R AVK D L ++ Sbjct: 234 TRMIEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLIIS 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 +P++G+A + + V Y P I FN +YL+E ++ I+SD+ Sbjct: 294 SSDPEIGEARDELTVDYQGEPFIIGFNARYLIEALERITSDK 335 >gi|157803823|ref|YP_001492372.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel] gi|157785086|gb|ABV73587.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel] Length = 379 Score = 163 bits (413), Expect = 4e-38, Method: Compositional matrix adjust. Identities = 112/355 (31%), Positives = 193/355 (54%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A +IE++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKMLVQSLGFASSVIEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 V G +TVS L D+VRKL D S +LGT + I + F L + P S FP Sbjct: 62 VVSEGELTVSTKTLNDVVRKLSD----SELTLTDLGTTGLEIKGKNCTFNLFTLPVSSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+++ + ++E T F+++ +E RY LNG++ HI +D + + +TDGH Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFYSASTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235 RL+++ V + QI +I+P+K+ EIL+I+ + ++V LS ++I E+ Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINQDIEVLLSSNKIKFICNENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +LIDG FP+Y IP S+ +L +N ++DR++I++ + +AVKL LS + L Sbjct: 235 IMLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIDRIAIITVEKFRAVKLLLSRETL 294 Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ G A E +N Y ++ + I FN +YL +++ + SD V Sbjct: 295 EISAVGEARGNAQEVINSSQAKESFYEYNSDESLAIGFNPQYLDDVLKAVKSDLV 349 >gi|11320899|gb|AAG33945.1|AF197885_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 97/368 (26%), Positives = 199/368 (54%), Gaps = 13/368 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGILSLTATNLEIELIANIQLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 + G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 THYISGNTTVSSRKLLDICRHSLNTSNINI----ELNANKIHIISNTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S +LK+++E+THF+M +++RYYLNG+ + L + VATDG Sbjct: 117 PNHNHFHHISEFCIDSHILKDMIEKTHFSMGKQDVRYYLNGMLLEMINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL + + Q + SI++ RK + E+ ++L+ +++ + ++ I + IE L + Sbjct: 175 YRLGITHTLLKQQQIESFSIVMTRKGIIELYKLLNISRQLIRILIGKNSIRIYIEQLVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY ++ + + +NC L+Q++ R +I++ + V++ + ++ + Sbjct: 235 AQLIEGKFPNYNSIFLKKKNNAIILNCALLKQSLLRAAILTHEKFCGVEIHIKKNQFTVL 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+++++ISS + ++ L++SN+S+ Sbjct: 295 SDNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISS-----ENILLFLNNSNNSIQ 349 Query: 359 IRGKDKDS 366 I ++ S Sbjct: 350 IEAENDTS 357 >gi|11320903|gb|AAG33947.1|AF197887_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 99/368 (26%), Positives = 199/368 (54%), Gaps = 13/368 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGVLSLTATNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 + G+ TVS+ L DI R + + ++ EL +++I S + L++ P F Sbjct: 61 THYISGNTTVSSQKLLDICRHSLNSSNMNI----ELDANKIHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S+++K ++E+THF+M +++RYYLNG+ + L + VATDG Sbjct: 117 PNHNHFHHISEFYIDSNIIKEMIEKTHFSMGKQDVRYYLNGMLLEMINNSLHM--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 175 YRLGITHTLLKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY +V + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 235 AQLIEGKFPNYDSVFLTKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + + L++SN+S+ Sbjct: 295 SDNQEEETAEDTFNINYIGPSIKISINVYYMLDILNSISS-----ENIFLFLNNSNNSIQ 349 Query: 359 IRGKDKDS 366 I ++ S Sbjct: 350 IEAENDTS 357 >gi|23007031|ref|ZP_00049078.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 233 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%) Query: 146 FAMATEEIRYYLNGIFFHIN---EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 FA++TEE RYYLNG++ H E L VATDGHRLA A + MP II+PR Sbjct: 6 FAISTEETRYYLNGVYLHAPDGAERAEGLVGVATDGHRLARARLPRPEGAEGMPGIILPR 65 Query: 203 KAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261 K V EI ++ + +V+LS S+I + + +++ +LIDG FP+Y+ VIP N L Sbjct: 66 KLVTEIGKLADGDGGPAFEVALSPSKIRIGRDDTTLTSKLIDGTFPDYERVIPRDNPHTL 125 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321 ++ L A+DRV+ ++S R +AVKL+L +D++ +T +NPD G+A E + ++ PM Sbjct: 126 ALDGKALAPALDRVTTIASERGRAVKLALDADRIVLTQNNPDAGEATEEADAKFDGAPMQ 185 Query: 322 ICFNYKYLLEIIDNISSDEV 341 I FN KYL EI+ + S+ V Sbjct: 186 IGFNGKYLAEILALLDSEHV 205 >gi|145588191|ref|YP_001154788.1| DNA polymerase III subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046597|gb|ABP33224.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 371 Score = 163 bits (412), Expect = 5e-38, Method: Compositional matrix adjust. Identities = 115/390 (29%), Positives = 209/390 (53%), Gaps = 29/390 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 + R +L+ L I+ER++T+P+ ++L + N + ++ EI+IT V Sbjct: 4 VNTSRDSLLKPLQVVSGIVERRHTLPILANLLFKKNGEKVSFISTDIEIQITTNANFGVG 63 Query: 62 --DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV + TV+A L DI+R L +G K+N + + G S F LQ+ +EFP Sbjct: 64 SEDV--TTTVAARKLLDILRALPEGEVSLNLKDNRM----VVQSGKSRFSLQTLSATEFP 117 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E ++ + + L+ + HF+MA ++IRYYLNG+ + E ++ AVATDG Sbjct: 118 VMQSVGEVTAAWSMTQKSFRQLISQVHFSMAQQDIRYYLNGMLLVV--EGKEVVAVATDG 175 Query: 179 HRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 HRLA + V++ + + II+PRK + E +L D S+++SL+ +++ + + Sbjct: 176 HRLAFSRVELTEAPSGSGQRQEIIIPRKTILECQHLLEDSDESLEISLTANQVKFSFGDI 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +L++G+FP++Q VIP + L V L+ A+ R +I+++ + + V+ SLS +++ Sbjct: 236 ELISKLVEGKFPDFQRVIPKGHKNTLVVGRDALQAALQRAAILTTDKFKGVRFSLSPNRI 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N + +A E + Y+ ++I FN YLL+++ N+ ++++ L +NS Sbjct: 296 TIQSTNAEQEEAQEEIETEYSGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDANS 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + S+N K YV+MPMRI Sbjct: 351 SAVV--TLPGSENFK-------YVVMPMRI 371 >gi|94967033|ref|YP_589081.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis Ellin345] gi|94549083|gb|ABF39007.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis Ellin345] Length = 371 Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 120/387 (31%), Positives = 196/387 (50%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV + D+L+ L ++ERK TIP+ + L +A L I A+ ++ + A Sbjct: 1 MEITVSKFDLLKELTATQGVVERKTTIPILSNFLFEAVGDKLNITATDLDLSLRTACVTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T+ A LYD V+ L DG EN VNI G SN + S FPS Sbjct: 61 VKKEGSCTIPARKLYDYVKLLPDGDITIKLLENHW---VNIRSGRSNTKMVGMARSNFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ ++ L+ ++ +T FA++ EE RY LNG + E L V+TDGHR Sbjct: 118 LPVFPTTGMVKIPAAALRTMIGKTIFAISNEESRYTLNGALMVLKPESL--IMVSTDGHR 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 LA + +I+ +VP+KA+ E+ +L S ++ ++ + ES + I ++ Sbjct: 176 LAHIERQGGKFEISGEMKTLVPKKAMSELYSLLQSTETEDIEFAKDESTLFFRIGGRLLT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R + G+FPNY+ V+P NDK + + A+ RV+ + R QA+K+ L D+L ++ Sbjct: 236 SRQLTGQFPNYEAVLPKDNDKSVTIRTDEFMAAILRVAQFADERSQAIKVRLEKDELRIS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G++ +S+ Y + I FN +YL+E + +DEV RL+ N+ Sbjct: 296 SSSTETGESEDSIVTAYTGEVVTIGFNSQYLIEFLKAAGADEV-------RLEFKNAQS- 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 G+ + + + K YV+MPMRI Sbjct: 348 -AGQLRPEATSDEFKYR--YVVMPMRI 371 >gi|323939115|gb|EGB35329.1| DNA polymerase III beta subunit protein [Escherichia coli E482] Length = 232 Score = 162 bits (410), Expect = 9e-38, Method: Compositional matrix adjust. Identities = 92/249 (36%), Positives = 150/249 (60%), Gaps = 17/249 (6%) Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV + I Q Sbjct: 1 MKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVCSMPI-GQSLPSH 57 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 S+IVPRK V E++R+L D+ ++V + + I ++ + +L+DG FP+Y+ V+P + Sbjct: 58 SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKN 117 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 DK L C L+QA R +I+S+ + + V+L +S ++L +T +NP+ +A E ++V Y+ Sbjct: 118 PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYS 177 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 M+I FN Y+L++++ + + V L S SSV I +D S+ +A Sbjct: 178 GAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI--EDAASQ-------SA 223 Query: 377 FYVLMPMRI 385 YV+MPMR+ Sbjct: 224 AYVVMPMRL 232 >gi|270158401|ref|ZP_06187058.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968] gi|289163355|ref|YP_003453493.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150] gi|269990426|gb|EEZ96680.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968] gi|288856528|emb|CBJ10323.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150] Length = 367 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/387 (29%), Positives = 204/387 (52%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 + T+++ D+L L +++K ++ + + L+ +DGLL I A+ EIEI+ + Sbjct: 2 FEFTIKKEDLLPPLLAVAGAVDKKQSLAILSNFFLKLSDGLLNITATDLEIEISAQVACV 61 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S GSITV A DI+R L D N L T + G S+F L + P +P Sbjct: 62 SKHSSGSITVPAKKFIDIIRSLDDETSPDVLVNNSLLT---LKQGRSSFKLTTLPAEGYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +++E L VL L++ THFAMA +++R +LNG+F E +L + AVATDGH Sbjct: 119 LSEDECNEVELTLPRLVLLKLLQSTHFAMAQQDVRVFLNGLFLDF-EPNL-ISAVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 R+A+ + I+ +++P+K V E+LRIL+ D + ++ +S L Sbjct: 177 RMAICRYQ-CSNISD-KKLLLPKKGVQELLRILNYIDDEEILLTAGKSHFKLITRQFVFI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+ FP Y IP + DK + ++C+ L++++ R+ I++ + +AV L L L + Sbjct: 235 SKLIEARFPPYTKAIPRNQDKHILIDCSVLKRSLSRIVILAHEKSKAVMLHLQPGMLTLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +N + +A+ES+ + I N YLL+++ + + ++ L +++SS+ Sbjct: 295 ANNNEQEEAVESLIAETQGDELKIGLNATYLLDVLSHFG-----EGQIRLSLSNTDSSIL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +S N++D + Y++MPM+I Sbjct: 350 I-----ESLNDEDYQ----YIIMPMKI 367 >gi|225873788|ref|YP_002755247.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791219|gb|ACO31309.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 373 Score = 162 bits (409), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 115/388 (29%), Positives = 197/388 (50%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I+V R D+L L + ++ERK TIP+ + L++A++ L I A+ + + + A Sbjct: 1 MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T+ A LYD V+ L +G +N V I G SN + + FP Sbjct: 61 VKKPGSCTIPARKLYDYVKLLPEGDVSIKLMDNHW---VQIRSGRSNTKMVGMARANFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + L+NL+ +T FA++ EE RY LNG + E + + VATDGHR Sbjct: 118 VPEFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAESIAM--VATDGHR 175 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSM 237 LA E + + ++PRKA+ E+ +L + D+ SV+ + +S + I + Sbjct: 176 LAHIEKSGENFPSMGAEKKTLIPRKALSELQSLLGNTDAESVEFADDDSTLFFRIGHRVL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + R + G+FPNY+ V+P N+K V +L +++ S + R A+K+ L ++L + Sbjct: 236 TSRKLTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D G++ + + Y+ P+ + FN YLL+ + I + EV + S+ Sbjct: 296 SASSTDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGN----TGEVRLEFKDAQSAG 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +D +D K Y++MPMRI Sbjct: 352 QMRPED----GQEDYKYR--YIIMPMRI 373 >gi|15604284|ref|NP_220800.1| DNA polymerase III subunit beta [Rickettsia prowazekii str. Madrid E] gi|6225282|sp|Q9ZDB3|DPO3B_RICPR RecName: Full=DNA polymerase III subunit beta gi|3860976|emb|CAA14876.1| DNA POLYMERASE III, BETA CHAIN (dnaN) [Rickettsia prowazekii] gi|292572033|gb|ADE29948.1| DNA polymerase III beta chain [Rickettsia prowazekii Rp22] Length = 381 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 123/399 (30%), Positives = 216/399 (54%), Gaps = 33/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A IIE++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLMQSLGFARSIIEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITV+ L DIVRK D E E+ T++ I + F L + P S FP+ Sbjct: 62 VLNEGEITVATQTLSDIVRKFPDSELT--LTEIEI-TQLEIKGQNCKFNLFTLPVSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+++ + ++E T F+++ +E RY LNGI+ HI +D + A +TDG+R Sbjct: 119 MDSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHI--KDKEFFAASTDGYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS---SVKVSLSESRIHL--NIESL 235 L+++ + + +I +I+P+K+ EIL+I+ + +++ LS ++I N ++ Sbjct: 177 LSISWITLEEKIKNF-GVILPQKSAEEILKIVKDPKNIHEDIEILLSSNKIKFICNENTI 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +S +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS L Sbjct: 236 LLS-KLIDGTFPDYSAFIPKSSVSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRKIL 294 Query: 296 CMTVDNPDMGKA---------IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A ES Y ++ + I FN +YL +++ I SD V E+ Sbjct: 295 EISAVGEARGTAKEIITASQDKESFYEYNHDESLVIGFNPQYLEDVLKAIKSDIV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F S+++ V I K +N KD +V+MP+++ Sbjct: 352 YFSDISASAPVLI----KFPRNPKD-----IFVIMPVKV 381 >gi|33519499|ref|NP_878331.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus] gi|33517162|emb|CAD83544.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus] Length = 367 Score = 161 bits (408), Expect = 1e-37, Method: Compositional matrix adjust. Identities = 118/388 (30%), Positives = 201/388 (51%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M VER+DI L II+ ++ +P+ H+LL D L I A+ EIEI I Sbjct: 1 MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQIS-FFKENELGTEVNISHGDSNFYLQSFPESEF 118 + S+TV + ++I + L + ++I +EN IS G SNF L P +F Sbjct: 61 KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQENRFL----ISSGCSNFVLSILPVLDF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P K+ E + VLK +++ T F+M ++ RYYLNGI + E + V+TDG Sbjct: 117 PKVKKYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGI--CLKTEKNTISMVSTDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL++ EV + S+I+PRK V EI +L + VK+ + + I++ + + + Sbjct: 175 YRLSMCEVT-SKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIR 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LID EFP+Y+ + ++ L+ A+ R SI+S+ +++ V L+S++L +T Sbjct: 234 SKLIDSEFPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357 DN + E + + ++ + I FN YLL++I+ VVD +++ F L ++ SSV Sbjct: 294 TDNFKEETSEEILKILFSYENISISFNVDYLLDVIN------VVDSQMLKFSLINTVSSV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G K + Y++MP+++ Sbjct: 348 QIEGVPK--------YYGSIYIIMPVKV 367 >gi|182412775|ref|YP_001817841.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1] gi|177839989|gb|ACB74241.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1] Length = 374 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R L ++ K T+P+ +VL++A + + + ++ I I A Sbjct: 1 MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T+ L IVR+L + + + +V ++ G SNF + + EFP Sbjct: 61 VKETGAVTLPVKRLATIVRELPN---VDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF L S L ++++ +A +T+E RY LNG++F N +D KL VATDG R Sbjct: 118 LPEFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYF--NFKDGKLSLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232 LA+ ++ +II+P K V E++R+L K +K++ ++ R I Sbjct: 176 LALVSKELEVPADSAGAIILPAKTVSELMRLLD-KGEKLKINFNDRRAAFQIATDKDSSG 234 Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ES+ + ++++G +PNYQ V+P + +++ Q V R +++ S + +VK+ L Sbjct: 235 LVESVYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIKL 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 SS+ L +T +PD G+A ESM + Y+ + + FN ++++ + ++ DE+ Sbjct: 295 SSNLLEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRALTKDEI 345 >gi|225163912|ref|ZP_03726204.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801489|gb|EEG19793.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 374 Score = 161 bits (407), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 103/359 (28%), Positives = 185/359 (51%), Gaps = 19/359 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R L ++ K T+P+ +VL++A + + + ++ I I A Sbjct: 1 MKFKINRDHFSNGLAQVLNVVGSKATMPILSNVLIEAEKDYISLTTTNLDLGIRCKIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ L IVR+L ++F + +V ++ G S F + + EFP Sbjct: 61 VKEPGSVTLPVKRLATIVRELPS-VDVAF--DGAANHQVKLTSGGSTFKIMGIGKDEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF L+ L +++ +A +T+E RY LNG++F N D KL VATDG R Sbjct: 118 LPEFGDDRSFNLSQEELTTMLKSVSYAQSTDETRYILNGVYF--NFRDAKLTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232 LA+ ++ +II+P K VGE+LR+L K + +K++ ++ R I Sbjct: 176 LALTSKEMEIPEESAGAIILPAKTVGELLRMLG-KGAKIKIAFNDRRASFEISTEGEDTG 234 Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 +S+ + ++++G +PNYQ VIP + +++ + V R +++ S + V++ L Sbjct: 235 LVDSIYLYSKVVEGNYPNYQQVIPKETHQRIKLERELFAECVHRAALVCSDKSNQVRIKL 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV---VDDEV 346 S++ L +T +PD G+A ESM + Y+ + + FN ++++ + ++ DEV + DEV Sbjct: 295 STNLLEITAQSPDFGEAHESMAIAYSGPDLQVAFNPAFVMDPLKALTKDEVFFELKDEV 353 >gi|11320905|gb|AAG33948.1|AF197888_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 160 bits (406), Expect = 2e-37, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 202/386 (52%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R + + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIHNLQKINRFVTKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 + G ITVS+ + DI R + + I EL +++I S + L + P F Sbjct: 61 KNYTSGHITVSSRKILDICRNSLNSSNIKI----ELCDNKIHIISDKSQYILTTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S+ LK ++E+THF+M +++RYYLNG+ + L C VATDG Sbjct: 117 PNYHHFHHIAEFCIDSNTLKEMIEKTHFSMGKQDVRYYLNGMLLEMINNSL--CMVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL + + + Q + SI++ R+ + E+ ++L+ S+K+ + ++ I + IE + Sbjct: 175 YRLGITQTLLTTQKIESFSIVMTRRGIIELYKLLNVSRQSIKILIGKNSIRIYIEQFIFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY ++ + + +NC L++++ R +I++ + V++ + +++ Sbjct: 235 AQLIEGKFPNYDSLFLTKKNNGIILNCMLLKKSLLRAAILTHEKFCGVEIHIQNNQFKAL 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 SDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +N + Y++M ++ Sbjct: 350 IEA---------ENDASTIYIVMLLK 366 >gi|319778797|ref|YP_004129710.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9] gi|317108821|gb|ADU91567.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9] Length = 380 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 111/378 (29%), Positives = 197/378 (52%), Gaps = 30/378 (7%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS----------ITV 69 I+E+K ++P+ HVL++ L++ S I+IT + D S + V Sbjct: 21 IVEKKASLPILSHVLIKKGPQSLDLVTSDLSIQITTKLRFGEDDSSSAPVDDAEIIKVAV 80 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVY 128 A L +I+R + GA I + N +++ +S DS F LQ+ P +++P + E+ Sbjct: 81 PALKLQNIIRVMPTGAMI---EANLNESKITLSADDSRFTLQTLPGADYPDANFDTEWKV 137 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 F + LK ++ AMA +IRYYLNG+ I E L VATDGHRL+ A + Sbjct: 138 RFSIDVQALKKILNLVSCAMAQSDIRYYLNGMLLVI--EPGMLHGVATDGHRLSHA-AET 194 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 + + +I+PRK V ++LR+L + V+VS+S I + + + ++G+FP+ Sbjct: 195 IEGVTDQTKVIIPRKTVEQLLRLLDESHNEVQVSVSGRSIQFKFGDIEVLSKQVEGKFPD 254 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 ++ VIP + E+ +N + + R +I+ + ++ ++KL ++++L ++ N D ++ Sbjct: 255 FEKVIPKGYNTEIIINRSEFSDNLQRANILVNEDKLHSIKLHFANNRLTISSSNLDQEES 314 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 +++ YN P+D+ FN YLLE++ ++S E V + SNSS+ I K+ D Sbjct: 315 KMELDIEYNNNPIDMGFNALYLLEVLSVLNSYENV---TLSMSGESNSSLLISIKEDDQF 371 Query: 368 NNKDNKVNAFYVLMPMRI 385 YV+MP+RI Sbjct: 372 K---------YVVMPLRI 380 >gi|81251073|gb|ABB69876.1| DNA polymerase III beta chain [Nitrosospira sp. NRS527] Length = 369 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 27/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT ++ V+ Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSV-EDVN 62 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 G S+TV A L DI+R L D Q++ EN L + G S F LQ+ P +F Sbjct: 63 PAGEERSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKA----GKSRFNLQTLPVEDF 118 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P E E + LK+++ +AMA ++IRYYLNG+ + ED L VATD Sbjct: 119 PKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLM--EDNYLKVVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA A + + A K +I+PRK V E+ R+L+ D V V ++++ ++ + Sbjct: 177 GHRLAFALMLLAAPQEKK-EVILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNVML 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG+FP+Y VIP +K+ +N L Q + R SI+S+ + + V+L L+S L + Sbjct: 236 VSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + +A E + + Y +DI FN YLL+++++++ + V F +S++ + Sbjct: 296 VCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNCETV---RCAFGDANSSALI 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G N D K YV+MPMRI Sbjct: 353 SIPG-------NNDFK----YVVMPMRI 369 >gi|81251069|gb|ABB69873.1| DNA polymerase III beta chain [Nitrosospira sp. GS832] Length = 369 Score = 160 bits (405), Expect = 3e-37, Method: Compositional matrix adjust. Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 27/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT ++ V+ Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSV-EDVN 62 Query: 63 VCG---SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 G S+TV A L DI+R L D Q++ EN L + G S F LQ+ P +F Sbjct: 63 PAGEEHSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKA----GKSRFNLQTLPVEDF 118 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P E E + LK+++ +AMA ++IRYYLNG+ + ED L VATD Sbjct: 119 PKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLM--EDNYLKVVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA A + + A K +I+PRK V E+ R+L+ D V V ++++ ++ + Sbjct: 177 GHRLAFALMLLAAPQEKK-EVILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNVIL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG+FP+Y VIP +K+ +N L Q + R SI+S+ + + V+L L+S L + Sbjct: 236 VSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + +A E + + Y +DI FN YLL+++++++ + V F +S++ + Sbjct: 296 VCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNCETV---RCAFGDANSSALI 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G D D K YV+MPMRI Sbjct: 353 SIPGND-DFK----------YVVMPMRI 369 >gi|189485007|ref|YP_001955948.1| DNA polymerase III beta subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286966|dbj|BAG13487.1| DNA polymerase III beta subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 373 Score = 160 bits (404), Expect = 4e-37, Method: Compositional matrix adjust. Identities = 115/393 (29%), Positives = 202/393 (51%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ E+ +++ + + KNT+P ++L +A +++ ++ EI + I Sbjct: 1 MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIKGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G IT+ + +I+++L +I K +E ++NI G S F L ++E+P Sbjct: 61 ITEDGGITIPSKRFANIIKELSTDDEIEI-KADETN-QINIKSGKSKFNLMGISKTEYPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +F + + +++++ FA + + RY LNGI+F + D KL VATDG R Sbjct: 119 IPEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFILG--DSKLTMVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNIESLSMS 238 LA A+ +I K +I VP KAV +ILR+L S +S +++ +S++RI I+ +++ Sbjct: 177 LAYAKTNITQAEVKGKAI-VPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLL 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-----MSSVRIQAVKLSLSSD 293 LI+G FPNY+ VIP +D ++++N N AV ++++ +SS R AVK S D Sbjct: 236 STLIEGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ + +G + + Y P +I FN ++ EI +I DE +F +S Sbjct: 296 LLKISASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSI--DEY---SAIFEFTNS 350 Query: 354 -NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N +V D+ N V+MPMR+ Sbjct: 351 LNPAVIYPETDE----------NYLCVVMPMRV 373 >gi|51473607|ref|YP_067364.1| DNA polymerase III subunit beta [Rickettsia typhi str. Wilmington] gi|81610796|sp|Q68WW0|DPO3B_RICTY RecName: Full=DNA polymerase III subunit beta gi|51459919|gb|AAU03882.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 381 Score = 159 bits (402), Expect = 7e-37, Method: Compositional matrix adjust. Identities = 120/399 (30%), Positives = 218/399 (54%), Gaps = 33/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I Sbjct: 2 LKLIVETKTLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVS L DIVRKL D ++++ + + + E I + F L + P S FP+ Sbjct: 62 VLSEGEITVSTQTLSDIVRKLPD-SELTLTELDIMKLE--IKGQNCQFNLFTLPVSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+++ + ++E T F+++ +E RY LNGI+ HI +D + A +TDGHR Sbjct: 119 MDSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHI--KDKEFFAASTDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRI---LSSKDSSVKVSLSESRIHL--NIESL 235 L+++ + + +I +I+P+K+ EIL+I L + +++ LS ++I N ++ Sbjct: 177 LSISWITLEEKIKNF-GVILPQKSAEEILKIVKDLKNIHEDIEILLSSNKIKFICNENTI 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +S +LIDG FP+Y IP S+ +L +N +++R++I++ + +A+KLSLS L Sbjct: 236 LLS-KLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTL 294 Query: 296 CMTVDNPDMGKAIESMNV-------YYNEC--PMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ G A E + Y C + I FN +YL +++ + S+ V E+ Sbjct: 295 EISAVGEARGNAKEIITASQDKESFYEYNCDESLVIGFNPQYLEDVLKAVKSNLV---EL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F S+++ V I K +N KD +V+MP+++ Sbjct: 352 YFSDISASAPVLI----KFPQNPKD-----IFVIMPVKV 381 >gi|328952218|ref|YP_004369552.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM 11109] gi|328452542|gb|AEB08371.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM 11109] Length = 388 Score = 159 bits (401), Expect = 9e-37, Method: Compositional matrix adjust. Identities = 102/362 (28%), Positives = 190/362 (52%), Gaps = 25/362 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +E+ +L+ G +I+R+ P+ H LL+A + L+I A+ E+ +G PA Sbjct: 1 MKLHIEKDALLQGAGRTQGVIDRRGHTPILSHCLLEAGNNQLKISATDYEVSFSGYYPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G +TV A Y+I+R+L G IS E+ + + I GD+ + P FP Sbjct: 61 VEEEGGLTVPAVSFYNILRELPAGT-ISL--ESTENSNLVIQVGDARYQFLGLPVENFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA--VATDG 178 + E EL++SVL ++E+T F++A ++I+ +L G+ ED ++ V++DG Sbjct: 118 LPKLENQPMIELSNSVLSEMLEKTIFSIAADDIQPHLTGVLLEKITEDGRIIVRLVSSDG 177 Query: 179 HRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++ E+ + QI +II+PRK V E+LR++S ++ + + + I L Sbjct: 178 HRLSLIDREIPAIEQINLEKAIIIPRKGVAEMLRLISEEERCA-LGIEKKSIILRQGDKY 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RL+D ++P+Y+ +IP S + + V + R+S++S+ + + V + +S L Sbjct: 237 LYIRLLDKKYPDYRRIIPASPEVRITVGRRAFLDVLKRISLLSAEKFKGVIMMVSEGWLD 296 Query: 297 MTVDNPDMGKAIESMNVYYNE-----------------CPMDICFNYKYLLEIIDNISSD 339 + NP++G E + + N P+ + +N +YL+E + + SD Sbjct: 297 IRYHNPEIGGGDERLPITVNFLNSEVVAEQERDEETLCLPIRLSYNARYLIEPLSVMQSD 356 Query: 340 EV 341 E+ Sbjct: 357 EI 358 >gi|260887487|ref|ZP_05898750.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] gi|330837869|ref|YP_004412449.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] gi|260862774|gb|EEX77274.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] gi|329745633|gb|AEB98989.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] Length = 370 Score = 159 bits (401), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 208/387 (53%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++++ + + + I K P+ + ++A + +E+ A+ E+ I IP+ Sbjct: 1 MKFTCHKNELAQAIQLVSKAIANKPQTPILSGIYMEATNNQVELHATDNEMGIISIIPSE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + +S + +++R+L G ++ +E + I SNF L S P ++FP+ Sbjct: 61 VEQEGKLVLSGRYMQEVIRRLP-GETVTISQEIDENIS-KIQSAASNFTLLSMPANDFPT 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K E F++ +VL++++++T FA +T+E R G IN E LK+ AT+ HR Sbjct: 119 VKRLEDGIRFKIQDNVLRDIIKKTVFACSTDEARPVFTGCQMEINGETLKMA--ATNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSMS 238 L+V + +++A ++ II+P K + E+LR L+S D V+V + S ++ E++ + Sbjct: 177 LSVKK-EVIANLSGDLHIIIPAKILNELLRALNS-DMPVEVDVCCSSNQASFQFENVVLM 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCM 297 RLI+G+FPNY +VIP + + ++ + AVDRVS++S S ++L +++ + Sbjct: 235 SRLIEGQFPNYDSVIPKNFATTVTLDTEDFLAAVDRVSLISRSADYNIIRLEFGGNQVHI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + ++PD+GKA E + + ++I FN KY+ +++ NI S F L+ S + Sbjct: 295 SSNSPDIGKADEIVAASIDGPAVNIAFNAKYVTDVLKNIDS-----KNFRFLLNQSLQAA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +R +D + Y++ P+R Sbjct: 350 AVREEDNPT---------FVYIVTPVR 367 >gi|296131552|ref|YP_003638799.1| DNA polymerase III, beta subunit [Thermincola sp. JR] gi|296030130|gb|ADG80898.1| DNA polymerase III, beta subunit [Thermincola potens JR] Length = 370 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 104/388 (26%), Positives = 200/388 (51%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +++++ + A R + KN +P+ +L++ + L + A+ E+ I +P + Sbjct: 1 MKFTSNKNNMVYGVQVAQRAVSPKNPLPILSGILMKLKNNNLCLTATDLELGIECTVPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS+ + A L +IVRKL D + S KEN + T + + S + + EFP Sbjct: 61 GSSEGSVVLPAKYLSEIVRKLPDVLIEFSVEKENNVAT---LKYAQSKTTIHGYSADEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + + KN++++ FA A +E R G+ F + ++L+L VATD H Sbjct: 118 LLPSLDGETTYVIKQELFKNMIKQVTFATAADENRPIFTGVLFEVEGDELRL--VATDTH 175 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA + + + ++P KA+ EI+RI+ ++ VK++ S +++ + ++++ + Sbjct: 176 RLALRIGAIGSHGYSGEKTGALIPAKALNEIVRIMPPENEEVKITFSNNQVVMELDNIRL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+G+FPNY+ VIP ++R+N AV+R S+++ ++L++ + L + Sbjct: 236 ISRLIEGQFPNYKQVIPQGCKSKIRLNTREFLDAVERASLLAKDGSNVIRLAVQNHTLII 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF-RLDSSNSS 356 ++PD+G E + + I FN KYL++++ V+D E VF L S S Sbjct: 296 NSNSPDIGTIHEELPIVLEGEETQIAFNSKYLIDVL------RVIDAEEVFLELTGSLSP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + D N Y+++P+R Sbjct: 350 GIVKPVEGD---------NYLYLILPVR 368 >gi|212659782|gb|ACJ36975.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 266 Score = 158 bits (400), Expect = 1e-36, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 150/263 (57%), Gaps = 7/263 (2%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 64 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK--MPS 197 L+ERT FAMA +++RYYLNG+ ++ KL A+DGH L + ++ AK Sbjct: 121 LIERTAFAMAQQDVRYYLNGLL--VDFPKTKLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238 Query: 258 DKELRVNCTNLRQAVDRVSIMSS 280 D+E++V LR A+ R +I+S+ Sbjct: 239 DREVKVAREVLRDALQRAAILSN 261 >gi|212659786|gb|ACJ36977.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 264 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 85/263 (32%), Positives = 150/263 (57%), Gaps = 7/263 (2%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 64 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK--MPS 197 L+ERT FAMA +++RYYLNG+ ++ KL A+DGH L + ++ AK Sbjct: 121 LIERTAFAMAQQDVRYYLNGLL--VDFPKTKLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238 Query: 258 DKELRVNCTNLRQAVDRVSIMSS 280 D+E++V LR A+ R +I+S+ Sbjct: 239 DREVKVAREVLRDALQRAAILSN 261 >gi|226942153|ref|YP_002797227.1| DNA polymerase III subunit beta [Laribacter hongkongensis HLHK9] gi|226717080|gb|ACO76218.1| DnaN [Laribacter hongkongensis HLHK9] Length = 377 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 100/343 (29%), Positives = 186/343 (54%), Gaps = 12/343 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VL++ + L A+ EI+IT A P + Sbjct: 4 LQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPEPI- 62 Query: 63 VCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +T SA DI+R + D ++ E+ + + G S F LQS P +FP Sbjct: 63 -AGPDFRLTTSAKKFSDILRAIPDRTTVTLDHED---GRLTVKAGKSRFNLQSLPADDFP 118 Query: 120 S-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + F L K L+ + +AMA ++IRYYLNG+ + +KL VATDG Sbjct: 119 LLTQSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKL--VATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A++ + + +I+PRK + E+ ++L+ D ++ ++L +++ + Sbjct: 177 HRLAFAQMTLDTPLPAA-EVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVIV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP NDK + L+QA+ R +I+++ + + V+L++ + +L + Sbjct: 236 SKVVDGKFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRIQ 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +N + +A E + + Y ++I FN YL +++ + D + Sbjct: 296 CNNSEQEEAEEELEIAYGGSGLEIGFNITYLQDVLAALHVDTL 338 >gi|89892748|ref|YP_516235.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51] gi|89332196|dbj|BAE81791.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51] Length = 385 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/389 (30%), Positives = 200/389 (51%), Gaps = 29/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + + + KNT+PV ++++A L +A+ EI I +PA Sbjct: 19 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 78 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESEFP 119 V+ G + + + L D+VRKL D E EL +V NI + +S+ L+ + EFP Sbjct: 79 VEKEGVVVLPSRLFSDLVRKLPD-----VLIELELQNDVINIHYNESDLSLRGYDPEEFP 133 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +F L S+ K ++++T FA + EE R G I + L+L +ATD H Sbjct: 134 LLPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTH 191 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA +AE+ QI K II P K +GEI R+L +D ++ + ++++I ++ + Sbjct: 192 RLAYRIAEISNPEQI-KFQGII-PAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHL 249 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKL 295 RLI+G+FPNY+ VIP S ++ ++ + +V+R S+++ +KLS+ +++L Sbjct: 250 LSRLIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERL 309 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + ++GK E M V + I FN K+LL+++ I S +E+VF L S S Sbjct: 310 SID-QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYS 363 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR D N Y+ +P+R Sbjct: 364 PGIIRPVDDP---------NYLYLALPVR 383 >gi|219666073|ref|YP_002456508.1| DNA polymerase III subunit beta [Desulfitobacterium hafniense DCB-2] gi|219536333|gb|ACL18072.1| DNA polymerase III, beta subunit [Desulfitobacterium hafniense DCB-2] Length = 367 Score = 158 bits (399), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 118/389 (30%), Positives = 200/389 (51%), Gaps = 29/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + + + KNT+PV ++++A L +A+ EI I +PA Sbjct: 1 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESEFP 119 V+ G + + + L D+VRKL D E EL +V NI + +S+ L+ + EFP Sbjct: 61 VEKEGVVVLPSRLFSDLVRKLPD-----VLIELELQNDVINIHYNESDLSLRGYDPEEFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +F L S+ K ++++T FA + EE R G I + L+L +ATD H Sbjct: 116 LLPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTH 173 Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA +AE+ QI K II P K +GEI R+L +D ++ + ++++I ++ + Sbjct: 174 RLAYRIAEISNPEQI-KFQGII-PAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHL 231 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKL 295 RLI+G+FPNY+ VIP S ++ ++ + +V+R S+++ +KLS+ +++L Sbjct: 232 LSRLIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERL 291 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + ++GK E M V + I FN K+LL+++ I S +E+VF L S S Sbjct: 292 SID-QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYS 345 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR D N Y+ +P+R Sbjct: 346 PGIIRPVDDP---------NYLYLALPVR 365 >gi|322433662|ref|YP_004215874.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9] gi|321161389|gb|ADW67094.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9] Length = 397 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 119/392 (30%), Positives = 207/392 (52%), Gaps = 22/392 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGA 56 ++ITV R+++L L A ++ERK TIP+ + L +A++ G L I A+ + + + Sbjct: 21 LEITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASNEGETGRLTITATDLDQSLRTS 80 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 A V G+ T+ A LYD +R L +G +N V I G SN + + Sbjct: 81 CAAKVKKAGACTIPARKLYDYIRLLPEGEISIKLMDNHW---VQIRAGRSNTKMVGMARA 137 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E ++ L+ + LK +V +T FA++ EE RY LNG + E + + VAT Sbjct: 138 NFPQVAEFPASGAYTLSVASLKTMVSKTIFAISNEESRYTLNGALLVLKAESMAM--VAT 195 Query: 177 DGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIE 233 DGHRLA E + + I+ ++PRKA+ E+ +L+S D+ +++ + +S + + Sbjct: 196 DGHRLAHVEKLGETLEGISGEKKTLIPRKALSELSSLLNSTDAETMQFADDDSTLFFKMG 255 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ R + G+FPNY+ V+P N+K + V +L A+ RV+ + R A+K+ L + Sbjct: 256 GRVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMSAIQRVAQFADERSGAIKIRLEQN 315 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L ++ + D G++ +++ YN P+ + FN +YL++ + I + EV + Sbjct: 316 ELRLSSSSTDSGESEDTIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKDA 371 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ +R +D N+D K Y+LMPMRI Sbjct: 372 QSAGQMRPED----GNEDVKYR--YILMPMRI 397 >gi|11320919|gb|AAG33955.1|AF197895_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 157 bits (398), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 98/368 (26%), Positives = 200/368 (54%), Gaps = 21/368 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76 R++ + ++P+ +VL+ +G+L + + EIE+ I S + + G+ T+S L D Sbjct: 18 SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRKLLD 77 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I R + + I N +++I G+S + L + P FP + ++ F + S + Sbjct: 78 ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK ++E+ F+M +++ YLNGI + + D L AVATDG+RL +++ + I Sbjct: 135 LKKMIEKIQFSMGKQDVPIYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 SI++PRK V E+ R+L+ +KV + ++ I ++IE L + +LI+G++P+Y++V+ + Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + + +N L+Q++ R +I+S + V++ + + + + DN + A + N+ Y Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I N Y++EI+++I+S + + L+++N+S+ I +N + Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357 Query: 377 FYVLMPMR 384 YV+M ++ Sbjct: 358 LYVVMLLK 365 >gi|326563091|gb|EGE13364.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 12P80B1] gi|326571724|gb|EGE21737.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC8] gi|326574362|gb|EGE24305.1| DNA polymerase III, beta subunit [Moraxella catarrhalis CO72] Length = 385 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 197/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R+ +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRNLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + ++ E T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ + C + V N ++G+A E + V Y+ +++ FN YL +++ Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V++ EV L+ +S I D YV+MPMR Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384 >gi|325288203|ref|YP_004264384.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM 8271] gi|324963604|gb|ADY54383.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM 8271] Length = 365 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/345 (30%), Positives = 181/345 (52%), Gaps = 12/345 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V ++D+L + R + KNT+P+ + L+A + L +A+ E+ I + A Sbjct: 1 MKIKVTKTDLLTGVNTVQRAVSAKNTLPILQGIKLRAENNTLCFEATDLELGIRSSFDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + + L +IVRKL D + + + + NI++ S+F + + EFP Sbjct: 61 IIEEGTIVLPSRLFSEIVRKLPD-SDVVLESTDHI---TNINYSGSSFTINGYDPEEFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +L + + KN++ +T FA A EE R G+ H+ E++L L V TD HR Sbjct: 117 IGDVPVEDEIKLPADLFKNMIRQTVFACAAEETRPVFTGLLLHLEEDNLAL--VGTDTHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA I K I VP K++ EI R+L D + + S+SR+ N S+ + R Sbjct: 175 LAYRTAKIPGNKQKFKGI-VPAKSMQEIYRLLQD-DHDLTIYCSKSRVFFNFGSIQLQAR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSDKLCM 297 LIDG+FPNY+ VIP + +L +N N V+R S++S ++ +V++++ + L + Sbjct: 233 LIDGQFPNYKQVIPQKCNTKLLINTKNFTDMVERASLLSKDNLIKTGSVRINVENSVLKI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + GK E M + + + I FN KY+L+++ I S+ ++ Sbjct: 293 N-QFSEAGKINEEMKINQDGEDVSISFNSKYVLDLLKIIDSENIL 336 >gi|332879970|ref|ZP_08447654.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681966|gb|EGJ54879.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 373 Score = 157 bits (397), Expect = 2e-36, Method: Compositional matrix adjust. Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINSSNTMPILDNFLFELSPNSLTISASDLETTVRGTLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI +SA LL DI++ + KEN + + IS N+ L +EFP Sbjct: 61 SDSVGSIAISAKLLTDILKTFSEQPLTFLVKENNI---IEISSTTGNYTLAYLDGAEFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L VL +++T FA+ +++R ++G+ F NE+ L V TD H+ Sbjct: 118 PVALPEANKVTLLGDVLATAIQKTIFAVGNDDLRPTMSGVLFQFNEQGLTF--VGTDAHK 175 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L E DI A A I+P+K + + IL+ ++ V V +ES + + + Sbjct: 176 LVKYERADIKATEAT--DFIMPKKPLNILKGILAGSETQVTVEYNESNAEFSFDDMEFIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY VIP N +L +N + +V+R+S+ S+ V+L ++ L ++ Sbjct: 234 RLIDGKYPNYDAVIPKENPNKLTLNRSQFYNSVNRLSLFSNKTTHQVRLKVAGSSLIISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D K E + Y M+I FN K+L E+I+N+ SDE++ Sbjct: 294 EDVDYSNKGEERLTCNYQGDDMEIGFNSKFLKEMINNLDSDEIL 337 >gi|330861745|emb|CBX71919.1| DNA polymerase III subunit beta [Yersinia enterocolitica W22703] Length = 253 Score = 157 bits (396), Expect = 4e-36, Method: Compositional matrix adjust. Identities = 86/255 (33%), Positives = 143/255 (56%), Gaps = 7/255 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIP 254 +L+DG FP+Y+ V+P Sbjct: 235 KLVDGRFPDYRRVLP 249 >gi|258513368|ref|YP_003189590.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777073|gb|ACV60967.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM 771] Length = 367 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 200/385 (51%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++L + + + K+ +P+ +L +A D L ++A+ E+ I +P Sbjct: 1 MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLPVK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + + + DI+R+L D + F+ N+ + I + +S + F EFP Sbjct: 61 VIETGEIVLPSKYIIDIIRRLPD--TVIEFESNDYLNSITIKYKNSQANIHGFAADEFPM 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++F +++S+ K ++ +T FA T+E R GI F I E++ K+ VATD HR Sbjct: 119 LPPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + ++P IIVP K + E+L+IL S++D +K++++E++I + +++ Sbjct: 177 LAMITEHLPLIKQELPGIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI G++PNY +VIP ++++ ++ Q+V+R S++SS Q +++ + + Sbjct: 237 RLIKGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIVIS 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G E + V++ + I FN KYL++ + + S +E+ L + + Sbjct: 297 SNNEAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDS-----EEIYLELSGPINPCLL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 R +D+ N +L+P+R Sbjct: 352 RTEDR----------NYLSILLPVR 366 >gi|81251065|gb|ABB69870.1| DNA polymerase III beta chain [Nitrosospira sp. PJA1] Length = 369 Score = 156 bits (394), Expect = 5e-36, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 203/387 (52%), Gaps = 25/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A EI+IT Sbjct: 4 IEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIAPDLEIQITTYTTDGGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 D S+TV+A L DI+R L + Q++ +N L + G S F LQ+ P +FP Sbjct: 64 ADEEYSVTVAAKKLQDILRALPEKVQVTLETSDNRLQAKA----GKSRFNLQTLPAEDFP 119 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E E + ++ LK+L+ +AMA ++IRYYLNG+ + LK+ VATDG Sbjct: 120 KFPESNEPQGTVKIQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 178 HRLAFALIMLETPLEKK-EVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLV 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L + Sbjct: 237 SKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIV 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +N + + E + + YN +DI FN YLL++++N S + V +NSS Sbjct: 297 CNNSEQEETQEELELQYNGEGLDIGFNITYLLDVLNNAES-----ETVTCAFGDANSSAL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 352 ITIPGNDSFK---------YVVMPMRI 369 >gi|326562315|gb|EGE12641.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 103P14B1] gi|326575519|gb|EGE25444.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 101P30B1] Length = 385 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + + E T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPE--ETVVIDAPEDTTRCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ + C + V N ++G+A E + V Y+ +++ FN YL +++ Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V++ EV L+ +S I D YV+MPMR Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384 >gi|13398088|gb|AAK21713.1| DnaN [Buchnera aphidicola] Length = 368 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 103/369 (27%), Positives = 196/369 (53%), Gaps = 14/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++L + Sbjct: 235 TAQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQLKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDS 366 I + S Sbjct: 350 QIEAEHDAS 358 >gi|326571821|gb|EGE21827.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC7] Length = 385 Score = 155 bits (393), Expect = 7e-36, Method: Compositional matrix adjust. Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C G T+ A + + + + L + ++ E T I+ G + L P + Sbjct: 61 KDGCIQAGGTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSAIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNGITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ + C + V N ++G+A E + V Y+ +++ FN YL +++ Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V++ EV L+ +S I D YV+MPMR Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384 >gi|326560702|gb|EGE11070.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 46P47B1] gi|326561744|gb|EGE12079.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 7169] gi|326569035|gb|EGE19104.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC1] Length = 385 Score = 155 bits (393), Expect = 8e-36, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + ++ E T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ + C + V N ++G+A E + V Y+ +++ FN YL +++ Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V++ EV L+ +S I D YV+MPMR Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384 >gi|326578062|gb|EGE27922.1| DNA polymerase III, beta subunit [Moraxella catarrhalis O35E] Length = 385 Score = 155 bits (392), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 112/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPEETVVIDAPEDT--TRCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTAVPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ + C + V N ++G+A E + V Y+ +++ FN YL +++ Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V++ EV L+ +S I D YV+MPMR Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384 >gi|13398084|gb|AAK21711.1| DnaN [Buchnera aphidicola] Length = 368 Score = 155 bits (391), Expect = 1e-35, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIDSNILKKMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++ + Sbjct: 235 TAQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDS 366 I + S Sbjct: 350 QIEAEHDAS 358 >gi|13398101|gb|AAK21719.1| DnaN [Buchnera aphidicola] Length = 368 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 103/370 (27%), Positives = 197/370 (53%), Gaps = 16/370 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +RL + I+ + K+ S II+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHT-ILTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLV 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++ Sbjct: 234 FTAQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFK 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S Sbjct: 294 VLSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNS 348 Query: 357 VFIRGKDKDS 366 + I + S Sbjct: 349 IQIEAEHDAS 358 >gi|71062229|gb|AAZ21232.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 296 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 99/313 (31%), Positives = 174/313 (55%), Gaps = 20/313 (6%) Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 +YDI+RK G +I+ + +++ + S F L SEFP T E F + Sbjct: 1 MYDIIRKFSSGKKINLSLTDV--SKLQVESEKSVFNLNCISASEFPLTDENFNQNEFSIK 58 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDGHRLAVAEVDIVAQ 191 S L L+ + F+++ +E R+YL+GIFFH + + K L A ATD HR++++++ + Q Sbjct: 59 SKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSHRMSISKIRLDQQ 118 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 + P II+P+K + ++ +L S D VK+S +S+I + + + +LIDG+FPNY Sbjct: 119 VDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISKLIDGKFPNYIQ 177 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311 VIP +N K+L ++ +VDRV+ +S + VK +LS D L ++V+N + G ES+ Sbjct: 178 VIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVNNTNSGDGKESL 237 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 V ++ ++I FN +YL+++ + D++ E+ F D+ + ++ D DS Sbjct: 238 TVKFDH-DLEISFNSRYLIDVASQLDGDKI---EIFFN-DTGSPALIKDPGDFDS----- 287 Query: 372 NKVNAFYVLMPMR 384 +V+MPM+ Sbjct: 288 -----IFVVMPMK 295 >gi|11320897|gb|AAG33944.1|AF197884_1 DNA polymerase III beta subunit [Buchnera aphidicola] gi|13398063|gb|AAK21701.1| DnaN [Buchnera aphidicola] gi|13398065|gb|AAK21702.1| DnaN [Buchnera aphidicola] gi|13398067|gb|AAK21703.1| DnaN [Buchnera aphidicola] gi|13398069|gb|AAK21704.1| DnaN [Buchnera aphidicola] gi|13398072|gb|AAK21705.1| DnaN [Buchnera aphidicola] gi|13398074|gb|AAK21706.1| DnaN [Buchnera aphidicola] gi|13398076|gb|AAK21707.1| DnaN [Buchnera aphidicola] gi|13398080|gb|AAK21709.1| DnaN [Buchnera aphidicola] gi|13398082|gb|AAK21710.1| DnaN [Buchnera aphidicola] gi|13398086|gb|AAK21712.1| DnaN [Buchnera aphidicola] gi|13398090|gb|AAK21714.1| DnaN [Buchnera aphidicola] gi|13398093|gb|AAK21715.1| DnaN [Buchnera aphidicola] gi|13398097|gb|AAK21717.1| DnaN [Buchnera aphidicola] gi|13398099|gb|AAK21718.1| DnaN [Buchnera aphidicola] gi|13398103|gb|AAK21720.1| DnaN [Buchnera aphidicola] gi|13398105|gb|AAK21721.1| DnaN [Buchnera aphidicola] Length = 368 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 102/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++ + Sbjct: 235 TAQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDS 366 I + S Sbjct: 350 QIEAEHDAS 358 >gi|296112232|ref|YP_003626170.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4] gi|295919926|gb|ADG60277.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4] Length = 385 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C G T+ A + + + + L + ++ E T I+ G + L P + Sbjct: 61 KDGCIQAGGTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ + C + V N ++G+A E + V Y+ +++ FN YL +++ Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V++ EV L+ +S I D YV+MPMR Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384 >gi|81251054|gb|ABB69862.1| DNA polymerase III beta chain [Nitrosospira sp. KAN8] Length = 369 Score = 154 bits (390), Expect = 2e-35, Method: Compositional matrix adjust. Identities = 121/387 (31%), Positives = 205/387 (52%), Gaps = 25/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTYTTDDGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 D S+TV+A L DI+R L + Q++ +N L + G S F LQ+ P +FP Sbjct: 64 ADEEYSVTVAAKKLQDILRALPEKMQVTLETSDNRLQAKA----GKSRFNLQTLPAEDFP 119 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E E + ++ LK+L+ +AMA ++IRYYLNG+ + LK+ VATDG Sbjct: 120 KFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 178 HRLAFALMMLETPLEK-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLV 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L + Sbjct: 237 SKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIV 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +N + +A E + + Y+ +DI FN YLL++++N S + V +NSS Sbjct: 297 CNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDS-----ETVTCAFGDANSSAL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 352 ITIPGNDSFK---------YVVMPMRI 369 >gi|320535592|ref|ZP_08035689.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421] gi|320147555|gb|EFW39074.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421] Length = 367 Score = 154 bits (388), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 107/385 (27%), Positives = 196/385 (50%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ L+ L A II K I + +VLL A +G L +KA+ ++ IP Sbjct: 1 MKFTFDKDVFLKELAIAQEIISNKTAISILSNVLLTAKEGSLILKATDIKVNFETKIPVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV ++ L G +I ++++ +++ + F L++ +++FP Sbjct: 61 IQEEGSTTVFCDKFVSVISSLPQG-EIEITEKDQKLIITSVAK-KAKFQLRTISDNDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + FE+ + K ++E+T F+++ +E RY++NG++ E+L VATDG R Sbjct: 119 FSEPDNIQFFEINTKDFKEMIEQTVFSVSDDETRYFMNGVYMEKKNENL--IFVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E + I II+P K + I R + + S+ + + E I N S S Sbjct: 177 LAYIEKNFGITIPDFKGIIIPPKILSIINR-RTQNEGSIAIGVGEKNIFFNFGSYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY VIP + DK + + L A+ RV+++ + + + +L+S L ++ + Sbjct: 236 LIDGQFPNYDKVIPENQDKSFEIEKSELTDALKRVALLVEQKTRRIFFNLNSGSLIISSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G+A E + Y + + NY Y+ E + I+SD + +++ ++ +R Sbjct: 296 ENELGQAKEEIPCQYEGDEIVMALNYLYVEEPLKVINSDRI-------KIEFTDP---MR 345 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ NKD F+++MPM+I Sbjct: 346 AITLRAEPNKD----FFHIIMPMQI 366 >gi|81251050|gb|ABB69859.1| DNA polymerase III beta chain [Nitrosospira sp. HBN8222A] Length = 369 Score = 153 bits (387), Expect = 3e-35, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D S+TV+A L DI+R L + Q++ + + + G S F LQ+ P +FP Sbjct: 64 ADEEYSVTVAAKKLQDILRALPEKVQVTLETSD---SRLQAKAGKSRFNLQTLPAEDFPK 120 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + ++ LK+L+ +AMA ++IRYYLNG+ + LK+ VATDGH Sbjct: 121 FPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 179 RLAFALMMLETPLEKK-EVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L + Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIVC 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A E + + Y+ +DI FN YLL++++N + V +NSS I Sbjct: 298 NNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSSALI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS YV+MPMRI Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369 >gi|153830817|ref|ZP_01983484.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39] gi|148873701|gb|EDL71836.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39] Length = 250 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 85/258 (32%), Positives = 144/258 (55%), Gaps = 9/258 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGCITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSN 257 +L+DG FP+Y+ V C N Sbjct: 235 KLVDGRFPDYRRV--CRN 250 >gi|13398078|gb|AAK21708.1| DnaN [Buchnera aphidicola] Length = 368 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIHSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHALLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY + + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 235 TAQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDS 366 I + S Sbjct: 350 QIEAEHDAS 358 >gi|82701137|ref|YP_410703.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC 25196] gi|81251042|gb|ABB69853.1| DNA polymerase III beta chain [Nitrosospira multiformis] gi|82409202|gb|ABB73311.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC 25196] Length = 369 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 118/386 (30%), Positives = 205/386 (53%), Gaps = 23/386 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 4 IEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTDGGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V S+TV+A L DI+R L + +++ + + + G S F LQ+ P +FP Sbjct: 64 VREEYSVTVAAKKLQDILRALPEKMRVTLETND---SRLQAKAGKSRFNLQTLPAEDFPK 120 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + ++ LK+L+ +AMA ++IRYYLNG+ + LK+ VATDGH Sbjct: 121 FPESNETQGTVKVQQKELKHLLAMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A + + + + +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 179 RLAFALMMLETSLER-KEVILPRKVVLELSRLLNETEDPVTIEVLQNQVRFTFSNVVLVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L + Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTADNLRIVC 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A E + + YN +DI FN YLL++++N S + V +NSS I Sbjct: 298 NNSEQEEAQEELELQYNGDGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSSALI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS YV+MPMRI Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369 >gi|81251077|gb|ABB69879.1| DNA polymerase III beta chain [Nitrosospira sp. TYM9] Length = 369 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 125/389 (32%), Positives = 208/389 (53%), Gaps = 29/389 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI----P 58 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT ++ P Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKREKISFIATDLEIQITTSVEDANP 63 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117 A + S+TV A L DI+R L D Q++ EN L + G S F LQ+ P + Sbjct: 64 AGEE--RSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKA----GKSRFNLQTLPVED 117 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + LK+++ +AMA ++IR YLNG+ + ED L VAT Sbjct: 118 FPKFPESTEPQAKITVQQKELKHILSMVQYAMAQQDIRCYLNGLLLLM--EDSYLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + A K +I+PRK V E+ R+L+ D V + ++++ ++ Sbjct: 176 DGHRLAFALMLLAAPQEKK-EVILPRKVVLELSRLLNDVDEPVTMEFLQNQVRFTFSNVI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP +K+ +N L Q + R SI+S+ + + V+L L+S L Sbjct: 235 LVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + Y +DI FN YLL+++++++ + V F +S++ Sbjct: 295 IVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNCETV---RCAFGDANSSAL 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G N D K YV+MPMRI Sbjct: 352 ISIPG-------NNDFK----YVVMPMRI 369 >gi|13398095|gb|AAK21716.1| DnaN [Buchnera aphidicola] Length = 368 Score = 153 bits (387), Expect = 4e-35, Method: Compositional matrix adjust. Identities = 101/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + I+ EL +++I S + L++ P F Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ I L + VATDG Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY + + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 235 TAQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDS 366 I + S Sbjct: 350 QIEAEHDAS 358 >gi|147676337|ref|YP_001210552.1| DNA polymerase sliding clamp subunit [Pelotomaculum thermopropionicum SI] gi|146272434|dbj|BAF58183.1| DNA polymerase sliding clamp subunit [Pelotomaculum thermopropionicum SI] Length = 369 Score = 152 bits (385), Expect = 7e-35, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 175/342 (51%), Gaps = 6/342 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +R ++ L R + KN +P+ + +A D L + A+ E+ I +I A Sbjct: 1 MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSITAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ + A + +++RKL D Q + ++ V I + S + F E+P Sbjct: 61 VLQPGAAVLPARYITELIRKLPD--QPFLIESDQDTGHVTIRYASSEASMNCFQADEYPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F + + ++ ++ + FA+ ++E R G+ F + E +++ VATD HR Sbjct: 119 FPVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREGQVQV--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA + D+ +I+ ++I+P +++ E+ RI +D VKV+ +ES++ + S+ Sbjct: 177 LAWRKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLIT 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI G FPNY+ VIP +R +L +A +R S++S AV+L + + +T Sbjct: 237 RLIGGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTA 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N ++G+ E + V P+ I FN +YL +++ + S+E+ Sbjct: 297 -NSEVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGSEEI 337 >gi|81251046|gb|ABB69856.1| DNA polymerase III beta chain [Nitrosospira sp. 9SS1] Length = 369 Score = 152 bits (384), Expect = 8e-35, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 4 IEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTDGGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D S+TV+A L DI+R L + +++ + + + G S F LQ+ P +FP Sbjct: 64 ADEEYSVTVAAKKLQDILRALPEKMRVTLETSD---SRLQAKAGKSRFNLQTLPAEDFPK 120 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + + LK+L+ +AMA ++IRYYLNG+ + LK+ VATDGH Sbjct: 121 FPESNEKQGTVTVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A + + + + +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 179 RLAFALMMLETSLER-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L+++ L + Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTANNLRIVC 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A E + + YN +DI FN YLL++++N S + V +NSS I Sbjct: 298 NNSEQEEAQEELELQYNGEGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSSALI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS YV+MPMRI Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369 >gi|81251062|gb|ABB69868.1| DNA polymerase III beta chain [Nitrosospira sp. TCH716] Length = 369 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D S+TV+A L DI+R L + Q++ + + + + G S F LQ+ P +FP Sbjct: 64 ADEEYSVTVAAKKLQDILRALPERVQVTLETSD---SRLQVKAGKSRFNLQTLPAEDFPK 120 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + ++ LK+L+ +AMA ++IRYYLNG+ + LK+ VATDGH Sbjct: 121 FPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 179 RLAFALMMLETPLEKK-EVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++ L + Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLRIVC 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A E + + Y+ +DI FN YLL++++N + V +NSS I Sbjct: 298 NNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSSALI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS YV+MPMRI Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369 >gi|11320893|gb|AAG33942.1|AF197882_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/369 (26%), Positives = 197/369 (53%), Gaps = 14/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ + +L + + EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ITVS+ L DI R + + ++ EL +++I S + L++ P F Sbjct: 61 KHYVSGNITVSSRKLLDICRHSLNSSNMNI----ELHANKIHIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + S++LK ++E+THF+M +++RYYLNG+ + L + VATDG Sbjct: 117 PNHNNFHHIAEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEMIHNSLYM--VATDG 174 Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + + I + IE L Sbjct: 175 YRLGMTHTRLTKTQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGTNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY ++ + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 235 TAQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQCKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDS 366 I + S Sbjct: 350 QIEAEHDAS 358 >gi|116750114|ref|YP_846801.1| DNA polymerase III subunit beta [Syntrophobacter fumaroxidans MPOB] gi|116699178|gb|ABK18366.1| DNA polymerase III, beta subunit [Syntrophobacter fumaroxidans MPOB] Length = 369 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 108/370 (29%), Positives = 193/370 (52%), Gaps = 20/370 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 MK+ +E+ +++++L I ++K+++PV +VL+ +++ +E A+ E+ + Sbjct: 1 MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQTGG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ GS TVSA L++IVR+L Q E ++ I G + F L + P +FP Sbjct: 61 QVETPGSSTVSARKLFEIVREL---PQPEVLLEGLPNNKMQILSGRARFELSTIPGEDFP 117 Query: 120 ST---KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVA 175 +E E V ++ ++ LK + +T ++ +E + + G F H +NE+ + V+ Sbjct: 118 QLNFYRETELV---KVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNEDSYRF--VS 172 Query: 176 TDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 +DGHRL+ EV + + +I+PRK V EILR+L K+ V + + E + L Sbjct: 173 SDGHRLSYCEVPKEAFGTLDIREGLIIPRKGVQEILRMLE-KEEEVVLGVHEKYVVLRTP 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S +SV+L+D EFP Y+ +IP + ++ A+ R SI+S+ + V+ L+ Sbjct: 232 STFLSVQLLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NP++G A E+++V Y + FN +YLLE I + S V + V D Sbjct: 292 VLELEAGNPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWV----DQF 347 Query: 354 NSSVFIRGKD 363 + VF+ +D Sbjct: 348 HGGVFVGSED 357 >gi|81251058|gb|ABB69865.1| DNA polymerase III beta chain [Nitrosospira sp. TCH711] Length = 369 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 4 IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGGK 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D S+TV+A L DI+R L + Q++ + + + + G S F LQ+ P +FP Sbjct: 64 ADEEYSVTVAAKKLQDILRALPERMQVTLETSD---SRLQVKAGKSRFNLQTLPAEDFPK 120 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + ++ LK+L+ +AMA ++IRYYLNG+ + LK+ VATDGH Sbjct: 121 FPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ + Sbjct: 179 RLAFALMMLETPLEK-KEVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++ L + Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLRIVC 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A E + + Y+ +DI FN YLL++++N + V +NSS I Sbjct: 298 NNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSSALI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS YV+MPMRI Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369 >gi|11320909|gb|AAG33950.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 206/387 (53%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFNIKNNIFVQHLQKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEF 118 + GSITVS+ L I R + + I EL ++++ S++ L + P F Sbjct: 61 QHYISGSITVSSRKLLQICRNSSNLSNIQI----ELHDNKIHVISDKSHYTLNTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + Y+ + S +L+ ++E+ +F+M +++RYYLNG+ I + L + VATDG Sbjct: 117 PNHQNFCYISEITIQSRILREIIEKIYFSMGKQDVRYYLNGMLCKIIDNSLHM--VATDG 174 Query: 179 HRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL +++ ++ + I K SII+ RK + E+ +L+ VKV + S I + I L Sbjct: 175 YRLGISKTLLLKEEIIKNFSIIIARKGITELYXLLNFSXQLVKVFIGRSNIRIYIXXLIF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FP+Y+++ + + ++C L+Q++ R +I++ + +++ ++ ++ + Sbjct: 235 TAQLIEGKFPDYESIFLKKKNNGILIDCQLLKQSLSRAAILAHEKFCGIEIHINKNQFKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A + ++ Y ++I N Y+L+I++ I+S ++ L+ SN+S+ Sbjct: 295 LSDNQEEETAEDIFDINYIGPSIEISINVYYILDILNVINS-----QNILLFLNHSNNSI 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +N + Y++M ++ Sbjct: 350 QIEA---------ENDASTIYIVMLLK 367 >gi|149919820|ref|ZP_01908297.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1] gi|149819427|gb|EDM78858.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1] Length = 372 Score = 152 bits (383), Expect = 1e-34, Method: Compositional matrix adjust. Identities = 110/386 (28%), Positives = 190/386 (49%), Gaps = 15/386 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M+ ++++ L L A + +R++T+PV +VLL+A D L A+ I +T +P Sbjct: 1 MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVPC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GS+T+ L +VR L GA +N + I S F L PE +FP Sbjct: 61 KVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDN---SWAQILAKRSEFKLMGMPEGDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L NL+E+T F+++T+E R LNG + + + V+TDGH Sbjct: 118 ELPDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLESDGQTATM--VSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ +A IIVPRK + EI ++L+ + V +++S+ + + E L++SV Sbjct: 176 RLTKFSLELEG-LALPREIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L + FP ++ V+P + V T L A+ + ++++ + VK+ L L + Sbjct: 235 KLNNVTFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DNP++G + V Y+ P+ FN YL+E + +S+D + D + Sbjct: 295 DNPELGAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLD-----FQGELDPCVL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D N + V+ V+MPMRI Sbjct: 350 RPAPDDEGN---DPVDFLAVVMPMRI 372 >gi|198282150|ref|YP_002218471.1| DNA polymerase III subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667577|ref|YP_002424516.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246671|gb|ACH82264.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519790|gb|ACK80376.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 365 Score = 151 bits (382), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 106/388 (27%), Positives = 185/388 (47%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT++R D+L +L + I +R+ P+ HVL++A A+ E++++ + Sbjct: 1 MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSADLDHP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ V A LYDI R L + I F K+ G ++ + S F L P +FP Sbjct: 61 VDAPGTCAVPARKLYDICRALPEHTPIEFHKD---GEKLLLKAAKSRFTLHILPADQFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + MA + R +LNG+ + ++L+L VATDGHR Sbjct: 118 LSTHSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRL--VATDGHR 175 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + + + I+PRKAV E+LRIL D + + +S++ LN + + Sbjct: 176 LAMMTLPFASSLESGSYQAILPRKAVLELLRILD--DGDIVLEMSDASFLLNDGTQQFAC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LID ++P+Y+ VIP + + ++ + A+ + ++ S R L L +D++ + Sbjct: 234 KLIDAKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + + + V Y +DI FN +YL D +F S+ + Sbjct: 294 RNEEQEEGEIQIPVEYQGDTLDIAFNSRYL------------TDTTQIF----PQESLRM 337 Query: 360 RGKDKDSKN--NKDNKVNAFYVLMPMRI 385 R KD DS + N Y++MP+R+ Sbjct: 338 RVKDSDSSAVFTPVDSNNPLYIIMPVRL 365 >gi|255659820|ref|ZP_05405229.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544] gi|260847895|gb|EEX67902.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544] Length = 370 Score = 151 bits (381), Expect = 2e-34, Method: Compositional matrix adjust. Identities = 96/341 (28%), Positives = 183/341 (53%), Gaps = 9/341 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT ++++ L R + K P+ + L+A LE++A+ EI + I A Sbjct: 1 MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G +TV ++VRKL + +++ + ++ V+I + F L S +EFP Sbjct: 61 IEEPGELTVGGRYFQEVVRKLPGENVKLACTADEKI---VHIESAMAKFTLLSMNAAEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F + ++L++L+++T FA +T+E R G + E K+ AT+ H Sbjct: 118 TIQPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTEN--KVTMAATNTH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RL+V I + +I+P + + E+L +SS + VK+S S ++I + ++L M+ Sbjct: 176 RLSVKSETFDQSIGNI-KVIIPSRILQELLHNMSSDIPTDVKISCSYNQISFSFDNLYMT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCM 297 RLI+G+FPNY+ VIP ++ + AVDR+S+++ + +KL + +++ + Sbjct: 235 SRLIEGQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 T +NP++G A E + + + I FN +Y+++++ NI S Sbjct: 295 TSNNPEIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDS 335 >gi|254445280|ref|ZP_05058756.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198259588|gb|EDY83896.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 380 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 92/363 (25%), Positives = 188/363 (51%), Gaps = 21/363 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R L ++ K T+P+ +VL++A + + + ++ I I A+ Sbjct: 1 MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIKAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++T+ L IV++L + E +V I+ G SNF + EFP+ Sbjct: 61 IEEEGAVTLPVKRLATIVKELPNS---DVKVEASPSNQVKIASGGSNFKIMGISREEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED----LKLCAVAT 176 E SF + L +++ +A +++E RY LNG+FF+ E + +L VAT Sbjct: 118 LPEFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DG RLA + ++ S+I+P K V E++R+L K ++K++ ++ R+ I + Sbjct: 178 DGRRLAKTDHEMEVGEGMSGSLILPAKTVSELVRLLD-KGENLKIAFNDRRVAFQIHTKD 236 Query: 235 --------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + + ++++G +PNYQ VIP + ++V Q++ R +++++ + V Sbjct: 237 DSDGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSNQV 296 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV---VD 343 K+ +S++ + ++ +PD G++ ES+ + Y+ + + FN ++L++ + ++ DE+ + Sbjct: 297 KIQISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKALTKDELFFELK 356 Query: 344 DEV 346 DEV Sbjct: 357 DEV 359 >gi|51891140|ref|YP_073831.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51854829|dbj|BAD38987.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 368 Score = 150 bits (380), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 106/386 (27%), Positives = 194/386 (50%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + + L R + KNTIPV V L A G L I+A+ E+ I P Sbjct: 1 MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEAVTPCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + A D++R++ G ++S N + T + G S + + F +FP Sbjct: 61 VISEGETVLPARYFADLIRRIPYGNIELSVDYHNHVAT---LRWGRSQYVIHGFAADQFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +F + S+L++L+ +T FA +E + +L G+ F + +DL L ATDG Sbjct: 118 TLPDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKL-RDDL-LTGTATDGI 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 R+A AE S+I+P +++ E+ R+L+ +DS V V+++ +++ ++ + + Sbjct: 176 RIAYAEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL++G++P+ ++P E + +A++R ++++ + AVK+S +DK+ +T Sbjct: 236 SRLLEGQYPDVMRLVPQHYPTEAVLPGAEFMEALERATLIT--KDGAVKISFQTDKVTIT 293 Query: 299 VDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + P++G+ E + V P+DI FN +YLL+ + V +E FR S S Sbjct: 294 SNTPEVGQVYEELAVTSMAGDPLDIGFNARYLLDFLK-------VLEEKQFRFQCSGSRN 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 R DS YV++P+ Sbjct: 347 PARLMPADSS-------QFLYVVLPL 365 >gi|9966390|gb|AAG10236.1|AF201699_1 DNA polymerase III beta subunit [Sinorhizobium meliloti] Length = 164 Score = 150 bits (379), Expect = 3e-34, Method: Compositional matrix adjust. Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 14/176 (7%) Query: 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 ++L S D V V +S+++I L I S+ M+ +LIDG FP+YQ VIP SNDKELRV+C + Sbjct: 3 KLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLIDGTFPDYQRVIPASNDKELRVDCQSFS 62 Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 QAVDRVS +SS R +AVKL+L+ ++ +TV+NPD G A E + V Y P++I FN KYL Sbjct: 63 QAVDRVSTISSERGRAVKLALADGQMTLTVNNPDSGSATEELPVGYESDPLEIGFNAKYL 122 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+I ++ E VF L S +R + +A YVLMPMR+ Sbjct: 123 LDITGQLTG-----GEAVFLLADPGSPTLVRDLAAE---------DALYVLMPMRV 164 >gi|118602062|ref|YP_903277.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567001|gb|ABL01806.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 367 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 114/394 (28%), Positives = 200/394 (50%), Gaps = 36/394 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++L L ++E+K +P+ HVL+Q D LL + + EIEI + Sbjct: 1 MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRASQIIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQIS--------FFKENELGTEVNISHGDSNFYLQS 112 S T+ A L DI++KL + I + K N+ E+N S+ Q Sbjct: 61 NQEEISFTIYAKDLIDIIKKLSEDIIIEFIIESSKIYIKVNKNSFELNTSNH------QD 114 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP P K + + ++ VLK+L+E T F+M +++IR YLNG++ I++ + Sbjct: 115 FPS--LPKIKNSDII---KIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNS--IV 167 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLN 231 VATDGHRL++ +V ++ S+I+PRKAV E+ ++L+ + + LS++ +L Sbjct: 168 VVATDGHRLSIGKVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLI 227 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + ++ RLIDG FPNY V+P + + + +N ++ + SI R + VKL Sbjct: 228 SNNTTIISRLIDGNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFK 287 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + KL + + + G+A +N+ + ++I FN YL+ I++ + ++E+ + +V D Sbjct: 288 NSKLHI-FSHSERGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEI--NMIV--PD 342 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S + + D YV+MPMRI Sbjct: 343 GKSQSCLLSSMNDDIYQ---------YVVMPMRI 367 >gi|332829626|gb|EGK02272.1| DNA polymerase III, beta subunit [Dysgonomonas gadei ATCC BAA-286] Length = 374 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 102/344 (29%), Positives = 176/344 (51%), Gaps = 8/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L L ++I KNT+P+ LL+ L + A+ E + ++ + Sbjct: 1 MKFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLTLTAADAETRLVTSLEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D +++L + + L T + +G NF QS ++P Sbjct: 61 EADGNGKFAVNAKNLLDPLKELPEQPLTFEINNDNLETFIFFHNGKYNFIGQS--GDDYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 KE +E S + VL + RT FA A +E+R +NG+FF I EDL VA+DG Sbjct: 119 QPKELKETAVSLTIEPQVLFAGINRTLFASADDELRPVMNGVFFDITPEDLTF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ A+ S I+P+K + IL + +V++ E+ ++ + S +M+ Sbjct: 177 HKLVRCKT-LSAKGAERASFILPKKPANLLKAILPKEAETVEIKFDENNAYIKMSSYTMT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R I+G +PNY +VIP +N ++ ++ A+ RVS+ S+ +KL L+ + +T Sbjct: 236 CRFIEGRYPNYNSVIPQNNTNKVILDRQTFLNALKRVSVFSNQASNLIKLQLTDRNIVVT 295 Query: 299 VDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D A E++ Y PM+I F +L+EI++NI S ++ Sbjct: 296 AQDIDFSTAAEETIACEYTGSPMNIGFKSSFLIEILNNIPSTDI 339 >gi|88802627|ref|ZP_01118154.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P] gi|88781485|gb|EAR12663.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P] Length = 372 Score = 150 bits (378), Expect = 4e-34, Method: Compositional matrix adjust. Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L+I AS E ++ + Sbjct: 1 MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENNLKISASDLETTMSSVVTVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL D ++ D Q FK E + IS + + F EFP Sbjct: 61 SDSTGSIAVSARLLLDTLKTFPD--QPLTFK-TEGANTIEISSDQGKYDMAYFGGDEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +++L + +T FA +++R ++G+FF + + L VATD H+ Sbjct: 118 ALSLPSPSKTVIPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + D+ A + I+P+K + + IL DS V + +++ +++ + Sbjct: 176 LVKYSRTDVTAD--QTAEFIMPKKPLNLLKGILGGSDSDVTIEYNDANAKFTFDNIVLVC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L V+ + +V RVSI SS ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D KA E ++ Y M I FN ++L E++ N+SS EV+ Sbjct: 294 EDLDFANKADERLSCDYQGDDMQIGFNSRFLSEMLSNLSSTEVL 337 >gi|291532566|emb|CBL05679.1| DNA polymerase III, beta subunit [Megamonas hypermegale ART12/1] Length = 346 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 95/344 (27%), Positives = 184/344 (53%), Gaps = 6/344 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT E+ ++++ + + + + +P+ + ++A+ +E++ + EI I I A Sbjct: 1 MKITCEKKELVQAIQTVLKAVPSRPQMPILSGIYIKAHQNYIELQGTDYEISIICKIKAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+I + LY++VR L G + K N+ VNI + F L + E+EFP Sbjct: 61 IETEGTIVLPGKYLYEVVRTLP-GEYVEI-KNNDSDNSVNIRSNSAQFNLLNMQENEFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + + N +++T FA AT+E R G I +E++ + AT+ HR Sbjct: 119 IEPLKGQIDFNLKNDIFLNFIKKTSFACATDESRPVFTGCLMDITDENIVMA--ATNMHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ + +I II+P K + E I +S+ + +++S + ++I + E++ + Sbjct: 177 LALIKENINYISDNNIKIIIPAKILNEFTHIFNSEIPTDIQISCTHNKISFSYENIYVIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 RLI+G+FP+Y VIP + +N + A+DRVS++S S + + + ++ Sbjct: 237 RLIEGQFPDYNRVIPKEFKTHVNINKNEFQSALDRVSLISRSGDYNIIHFEFVDNIVRIS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 DNP++GKA E++NV ++I FN KY+++++ I ++ + Sbjct: 297 SDNPNIGKAEETINVDIEGPGINISFNAKYIIDVLKAIDAENFI 340 >gi|239834278|ref|ZP_04682606.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] gi|239822341|gb|EEQ93910.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] Length = 351 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 36/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++++RS + L R IE +N+IP+ +VLL DG L + + ++EIT ++P Sbjct: 2 MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV +L DI +++ + + G + ++ G S + L P +FPS Sbjct: 62 DCHSGSATVPGKMLADIAKRVTGDITLELDAASS-GGRLTVASGRSRYKLDVLPAEDFPS 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + EL L LV A++T++ R +L+G+FFH +E +L AVATDGHR Sbjct: 121 FSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEG--RLVAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L D + +I+P K V + + +K+SLS++++ + ++ + Sbjct: 176 LVRNYGD---EGDTEYGVILPSKLVAMLPK------GVIKLSLSQTKVRIEAGGTVITSK 226 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G FP++ +IP N L V+ L A+ RVS +++ +AVKL + +D LC+++ Sbjct: 227 LIEGTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEV-ADVLCLSIA 285 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + KA + + + P+ I FN KYL +++ + + +V F S + Sbjct: 286 D----KAQDEIEGELDGEPLTIGFNPKYLQDMLGAVD-----EKDVCFAFSDGMSPAVLT 336 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G+ N V+MP+R+ Sbjct: 337 GQG-----------NWTGVVMPLRV 350 >gi|150014894|ref|YP_001307148.1| DNA polymerase III subunit beta [Clostridium beijerinckii NCIMB 8052] gi|149901359|gb|ABR32192.1| DNA polymerase III, beta subunit [Clostridium beijerinckii NCIMB 8052] Length = 366 Score = 149 bits (377), Expect = 5e-34, Method: Compositional matrix adjust. Identities = 110/392 (28%), Positives = 200/392 (51%), Gaps = 35/392 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T E+ ILE + + I K+T+P+ + + AN+ + + S ++ I + A+ Sbjct: 1 MIFTCEKQKILEGISIVQKAITGKSTMPILEGIYINANNSTITLIGSDMDVSIQTLVDAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A + +I+RKL + EN+L + I+ S F + +EFP Sbjct: 61 IMEEGSIVIDAKIFGEIIRKLPNSTIRIETMENQL---IKITCEKSIFDVVYMNTNEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++LKN+++ T FA+A +E R L GI F + ++L L VA DG+R Sbjct: 118 LPEINENLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVRNKNLNL--VALDGYR 175 Query: 181 LAV------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 LA+ ++DI +++P K + E+ +IL D V ++ + + I N++ Sbjct: 176 LAIKSEFLDTDIDI--------EVVIPGKTLNEVSKILEDIDEIVDITFTNNHILFNLKR 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 + RL++G+F NY++++P + + VN L+ A++R S+M+ +KL L D Sbjct: 228 TKIISRLLEGKFINYKSLLPQEHKLFVNVNRQELQNAIERASLMAKDGNTNLIKLDLHQD 287 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L +T N +GK + +++ ++I FN KYLL+++ N+ D+EVV ++ S Sbjct: 288 NLVIT-SNSQLGKVRDEISIKLQGDEIEIAFNSKYLLDVLKNME-----DNEVVMKMTSG 341 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I + N NA Y+++P+R+ Sbjct: 342 ISPCVIE---------EHNNENAKYLVLPVRL 364 >gi|325475138|gb|EGC78323.1| DNA polymerase III [Treponema denticola F0402] Length = 367 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 100/341 (29%), Positives = 178/341 (52%), Gaps = 5/341 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ +R +L+ + A II K + + +VLL DG L IKA+ ++ IP + Sbjct: 1 MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV I+ L G K+ +L + + + F L++ PE++FP+ Sbjct: 61 IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVKK--AKFQLKTIPENDFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F + + K ++ +T F+++ +E RY++NG++ N+ED L VATDG R Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIE-NKED-TLYFVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + I + +IVP K + I+ +S + +++V + E I N S S Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILN-IINKRASDEGNIEVGIGEKNIFFNFNSYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ VIP + + V+ T +A+ RVS++ ++ + + L++ L ++ Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++G A E + Y+ + + NY Y+ + + I+SD + Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITSDRI 336 >gi|256820579|ref|YP_003141858.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271] gi|256582162|gb|ACU93297.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271] Length = 374 Score = 149 bits (376), Expect = 7e-34, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 168/344 (48%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL DI++ + KEN + + IS N+ L EFP Sbjct: 61 SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + VL V++T FA +++R ++GI F +E L V TD H+ Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L E +DI A A I+P+K + + IL+ ++ V V +ES + + + Sbjct: 176 LVKYERLDIKANEAA--DFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY VIP N +L +N + +++R+S+ S+ V+L ++ L ++ Sbjct: 234 RLIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D K E Y ++I FN K+L E+I+N+ SDE++ Sbjct: 294 EDVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEIL 337 >gi|213964020|ref|ZP_03392264.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno] gi|213953352|gb|EEB64690.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno] Length = 384 Score = 149 bits (376), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 104/344 (30%), Positives = 168/344 (48%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 11 MKFIVSSSYLLKKLQVFGGVINSNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 70 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL DI++ + KEN + + IS N+ L EFP Sbjct: 71 SDSQGSIAVSAKLLIDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 127 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + VL V++T FA +++R ++GI F +E L V TD H+ Sbjct: 128 PVALPEASKVTMLGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 185 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L E +DI A A I+P+K + + IL+ ++ V V +ES + + + Sbjct: 186 LVKYERLDIKANDAA--DFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFIC 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY VIP N +L +N + +++R+S+ S+ V+L ++ L ++ Sbjct: 244 RLIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKVAGSSLVISA 303 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D K E Y ++I FN K+L E+I+N+ SDE++ Sbjct: 304 EDIDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEIL 347 >gi|11320895|gb|AAG33943.1|AF197883_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 149 bits (375), Expect = 8e-34, Method: Compositional matrix adjust. Identities = 99/387 (25%), Positives = 203/387 (52%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK + ++ L R I + + P+ ++L+ + +L + + EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G+ TVS+ L DI R + + ++ EL ++ I S + L++ P F Sbjct: 61 QHYVSGNTTVSSRKLLDICRHSLNSSNMNI----ELHANKIYIISDTSQYILRTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ Y+ F + S++LK+++E+THF+M +++RYYLNG+ + L + VAT G Sbjct: 117 PNHNNFHYISEFYIDSNILKSMIEKTHFSMGKQDVRYYLNGMLLEMINNSLYM--VATAG 174 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI+G+FPNY ++ + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 235 TAQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKV 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 DN + A ++ N+ Y + I N Y+L+I+++I+S + ++ L++SN+S+ Sbjct: 295 LSDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSINS-----ENILLFLNNSNNSI 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +N + Y++M ++ Sbjct: 350 QIEA---------ENDASTIYIVMLLK 367 >gi|315223688|ref|ZP_07865538.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga ochracea F0287] gi|314946263|gb|EFS98262.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga ochracea F0287] Length = 374 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 103/344 (29%), Positives = 168/344 (48%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL DI++ + KEN + + IS N+ L EFP Sbjct: 61 SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + VL V++T FA +++R ++GI F +E L V TD H+ Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L E +DI A A I+P+K + + IL+ ++ V + +ES + + + Sbjct: 176 LVKYERLDIKANEAA--DFIMPKKPLNILKGILAGSETEVTIEYNESNAKFSFDDMEFIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY VIP N +L +N + +++R+S+ S+ V+L ++ L ++ Sbjct: 234 RLIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D K E Y ++I FN K+L E+I+N+ SDE++ Sbjct: 294 EDVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEIL 337 >gi|310825636|ref|YP_003957993.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612] gi|308737370|gb|ADO35030.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612] Length = 371 Score = 149 bits (375), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 188/342 (54%), Gaps = 7/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R ++ L A + + K T+PV +L Q + L + ++ EI + +IPA+ Sbjct: 1 MKFSCSRDALINALSIAQKGVSNKTTLPVLEGILFQVYNNQLVLTSTDLEIGVQTSIPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD+ G I +S++L+ +++RKL G ++ F K++ +V I SNF ++ FP EFP Sbjct: 61 VDMDGEIILSSNLITEVIRKLS-GEEVFFQKDD--SNQVKIECLLSNFTIKGFPTDEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +SF + + VLK ++ T F++A E L G+ I + + L +A DG+R Sbjct: 118 FPEVIEEHSFVIEAGVLKEMIRGTIFSVAVSENIPVLTGLKMEIENDAISL--IALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ + I S+I+P K++ E+ ++LS + +V V S+++I + + + R Sbjct: 176 LSLKRGKLKEAIDGSISVIIPGKSMNELNKLLSGYNENVIVKFSKTQIFFEMGNTQFTSR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L++GEF NY+++IP +++V+ L ++ +R ++++ + +K+ + D+L +T Sbjct: 236 LLEGEFINYKHIIPTEKATQVKVSRKLLLESSERAALLAREGKNNLIKMDFNIDQLILT- 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N ++G E + + P+ I FN K+ ++ + I DE+ Sbjct: 295 SNAEIGDVFEVIPIENQGDPIKIAFNSKFFIDALKVIDRDEM 336 >gi|42525749|ref|NP_970847.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405] gi|41815760|gb|AAS10728.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405] Length = 367 Score = 148 bits (374), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 99/341 (29%), Positives = 178/341 (52%), Gaps = 5/341 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ +R +L+ + A II K + + +VLL DG L IKA+ ++ IP + Sbjct: 1 MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV I+ L G K+ +L + + + F L++ PE++FP+ Sbjct: 61 IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVKK--AKFQLKTIPENDFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F + + K ++ +T F+++ +E RY++NG++ N+ED L +ATDG R Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIE-NKED-TLYFIATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + I + +IVP K + I+ +S + +++V + E I N S S Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILN-IINKRASDEGNIEVGIGEKNIFFNFNSYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ VIP + + V+ T +A+ RVS++ ++ + + L++ L ++ Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++G A E + Y+ + + NY Y+ + + I+SD + Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITSDRI 336 >gi|163755511|ref|ZP_02162630.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1] gi|161324424|gb|EDP95754.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1] Length = 372 Score = 148 bits (373), Expect = 1e-33, Method: Compositional matrix adjust. Identities = 97/343 (28%), Positives = 179/343 (52%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L Q N+ L++ AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFQLNENELKVSASDLETTMSSVLTVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I V A LL D ++ + ++F E+ E++ +HG + L +EFP+ Sbjct: 61 SDSTGNIAVPAKLLLDTLKTFPE-QPLTFVVEDNNTVEISSNHG--KYALAYADGNEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + + +A VL + +T FA +++R ++G+FF + E+L VATD H+ Sbjct: 118 SVELKEPSATTIAGHVLSTAISKTIFASGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + D+ Q +++ I+P+K + + IL + V + ++S ++ + Sbjct: 176 LVKYQRTDL--QASQVAEFIMPKKPLNLLKGILGGSEDDVVIEYNDSNAKFTFDNTVLVC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L +N +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLEINRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L E+++N+ +D+V Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLGADDV 336 >gi|239787351|emb|CAX83828.1| DNA polymerase III subunit beta [uncultured bacterium] Length = 372 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 176/346 (50%), Gaps = 9/346 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV R ++ L +IE+K +PV H LL+A + I + +I I+ A Sbjct: 1 MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDIVISEECRAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ V LL+DIV++L+ +SF E++L + G S F L P +FP Sbjct: 61 TQIEGSLCVPGVLLHDIVKRLEGYDTLSFSHEDQLF----LRCGRSEFRLSVLPAEQFPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + +VLK +++ M ++ LN +F H E L V+TD H+ Sbjct: 117 VSQLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQ 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES----L 235 LA++++ + ++ ++V RKA+ EI R+L ++ V + S +RI ++ + + Sbjct: 177 LALSKISLEKKLDLQTGLVVGRKAITEIRRLLLDDNAKQVTLGASHARIQCDVVTDDLVI 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL+DG +P Y V+ ++ + N + L+ A++R+ ++ + + + L+ S++ + Sbjct: 237 MFTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNLM 296 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 MT + D G E + + ++ P I N YLL ++ I +++V Sbjct: 297 TMTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDTEQV 342 >gi|15606912|ref|NP_214293.1| DNA polymerase III beta chain [Aquifex aeolicus VF5] gi|3913514|sp|O67725|DPO3B_AQUAE RecName: Full=DNA polymerase III subunit beta gi|2984154|gb|AAC07688.1| DNA polymerase III beta chain [Aquifex aeolicus VF5] Length = 363 Score = 148 bits (373), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 205/387 (52%), Gaps = 26/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V+R ++ E+L A E+K +P+ + LL A + L ++A+ E + ++ Sbjct: 1 MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + V + LYDIV+ L + A + E G ++ I+ G S + L + P +FP Sbjct: 61 VEEEGEVCVHSQKLYDIVKNL-NSAYVYLHTE---GEKLVITGGKSTYKLPTAPAEDFPE 116 Query: 121 TKEEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E V E L+ ++L N +E+ +A+A EE L G++ E+ ++ V +DGH Sbjct: 117 FPE--IVEGGETLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYED--RIHFVGSDGH 172 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 RLA+ E + + +K +++PRK++ + ++++ +D +++ S ES + + ++ Sbjct: 173 RLALYEP--LGEFSK--ELLIPRKSLKVLKKLITGIEDVNIEKSEDESFAYFSTPEWKLA 228 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 VRL++GEFP+Y +VIP E+ + + + R+ +S ++ VK++LS + Sbjct: 229 VRLLEGEFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFE 288 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +P+ G+A E + V Y P +I FN KYL+E +D S + V F+ + +++ Sbjct: 289 FADPEFGEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDS-----ERVWFKFTTPDTATL 343 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D + + K ++MPMR+ Sbjct: 344 LEAEDYEKEPYK-------CIIMPMRV 363 >gi|288817885|ref|YP_003432232.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6] gi|288787284|dbj|BAI69031.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6] gi|308751484|gb|ADO44967.1| DNA polymerase III, beta subunit [Hydrogenobacter thermophilus TK-6] Length = 361 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 199/385 (51%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V+R + L+ L A E+K+ +PV + LLQA L +KA+ E +T ++ A Sbjct: 1 MRFSVDREEFLDALTKAKSATEKKSALPVLNNFLLQAQKDRLIVKATDLENFLTFSVRAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V+A L +++ + + E++L +I+ G S F L + +FP Sbjct: 61 VYEEGVVAVNADKLTSVIKAIPSATLQAQLLEDKL----SITGGRSKFNLTALEAEDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S ++ + +++T +A++ E+ RY L G++ H E K V +DGHR Sbjct: 117 FPEVKV--SSQIPAVDFLKAIDKTEYAISKEDTRYALQGMYIH--EHKGKTHFVGSDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + +++PRK++ I +L + + S HL E +S+R Sbjct: 173 LALYFTPSPFSL----ELLIPRKSLKVIEGLLKDYIGEISIGKDGSFAHLQGEDFQLSIR 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GE+P+Y +VIP S + E+ +N + A+ R+S ++ VK+SL + + Sbjct: 229 LLEGEYPDYLSVIPESFNIEVLINKSEFLSALKRLSAIAESSAFPVKISLQDNLAVFEIT 288 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 P+ G+ + +++ Y++ PM++ FN KYL+E +++ + ++V ++ +S++ + Sbjct: 289 EPEYGEGRDEVDIEYSQEPMELGFNGKYLIEALESFDT-----EKVWLKIVDPDSAIVLD 343 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +DK+S ++MPMRI Sbjct: 344 SEDKESDPY-------MCLVMPMRI 361 >gi|81251105|gb|ABB69900.1| DNA polymerase III beta chain [Nitrosomonas sp. OZK11] Length = 373 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 118/394 (29%), Positives = 198/394 (50%), Gaps = 32/394 (8%) Query: 1 MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AI 57 MK+T+ D+L + L I+ER++T+P+ + L++ +G L + + EIE +I Sbjct: 1 MKLTITNRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGKLTLVTTDLEIEAEAISSI 60 Query: 58 PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114 P ++ G++ TVS L DI+R L I + EN L I G S F LQ P Sbjct: 61 P-ELENQGTLQTTVSVKKLQDILRALPANTAIELTRSENRL----QIVSGKSRFSLQLLP 115 Query: 115 ESEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +FP E S+ L V K ++R AMA +++RYYLNG+ I ED K+ Sbjct: 116 AEDFPRMIRDNEPCSMSYTLPQRVFKKQLQRVSHAMAQQDLRYYLNGLLLLI--EDNKMT 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRL + + + K +II PRK V E++R L D V++ + ++ Sbjct: 174 LAATDTHRLGITSIALKGNFEKSETII-PRKTVLELIRQLEDSDRPVEIEIYPKKVCFRF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290 + ++I G+F +++ IP ++ VN + A+ R +I+SS + V L++ Sbjct: 233 PDAVLISKVISGKFLDFRRAIPQTSVFRFDVNRLDFFHALQRTAIISSSNDLFRNVHLNI 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +S KL ++ N + +A E + + Y++ +D FN YL+E+++N+ S ++V Sbjct: 293 TSGKLNISAKNKEQEEAQEEIEIVYSDETIDTSFNIVYLMEVLNNLDS-----EQVTCSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S S++ I D + +VLMPMR Sbjct: 348 ESMQSAILITLPDDEQFK---------HVLMPMR 372 >gi|85857847|ref|YP_460049.1| DNA polymerase III subunit beta [Syntrophus aciditrophicus SB] gi|85720938|gb|ABC75881.1| DNA polymerase III, beta chain [Syntrophus aciditrophicus SB] Length = 372 Score = 147 bits (372), Expect = 2e-33, Method: Compositional matrix adjust. Identities = 97/350 (27%), Positives = 183/350 (52%), Gaps = 11/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ + I+ERK+T+P+ ++LL+ D ++I A+ E+ + A Sbjct: 1 MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+IT+SA L++++R++Q G I F ++ ++ +S + + + EFP+ Sbjct: 61 IISSGAITLSAKKLFEMIREIQ-GDSIHFSCDDH--DQITLSSQKAVYRIPGISADEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 +E + + + +S+LK L+ + FA++ +E R L G E+ L VATDG Sbjct: 118 VAYDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDG 177 Query: 179 HRLA----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 HRLA V E + + K II+PRK + EI +++ ++ + + L + Sbjct: 178 HRLARSYEVIEGNSPFTLEK--GIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTAN 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + V LID +P+Y VIP + N L + R+ ++S+ + V L+L++++ Sbjct: 236 TLLKVSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNR 295 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + M NPD+G+A + + V Y + + FN YL++ I+ I +EV+ D Sbjct: 296 MIMNSTNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIREEEVLFD 345 >gi|332296671|ref|YP_004438593.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM 12168] gi|332179774|gb|AEE15462.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM 12168] Length = 367 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 97/341 (28%), Positives = 175/341 (51%), Gaps = 5/341 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T +R +++ + A II KN + + +VL A + L IKA+ ++ IP Sbjct: 1 MRFTFDRDAMVKEIAIAQEIISTKNALSILSNVLFIAENNTLAIKATDIKVNFETKIPVV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ T+ I+ L G +I F +E+ T IS F L+S +FP Sbjct: 61 IEEEGTTTIFCDKFMSILASLPPG-EIEFIQEDIKVTIKPISKK-VKFQLKSMASDKFPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F++ + K ++ +T FA++ +E RY++NG+FF +++L L V+TDG R Sbjct: 119 FSSAENVPYFDVPADQFKEMITQTIFAVSDDETRYFMNGVFFEKKDDNLNL--VSTDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + I PS+IVP K + +L+ SS + + +++ + I++ + S Sbjct: 177 LAFSSKALCQGITDFPSVIVPPKVLTAVLKRASS-EGMISLAIVDKMIYIKFGNYHFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FPNYQ VIP + + ++L A+ RV+++ + + V L+ L +T Sbjct: 236 LLEGQFPNYQRVIPETQAHSFELQKSDLADALKRVALLVDQKARRVYFELNPGTLTITSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 D+G A E + Y+ + I NY Y+ E + ++ D + Sbjct: 296 ESDIGVAKEEIPCQYDGETVTIAMNYLYIDEPMKVMNCDRI 336 >gi|308273671|emb|CBX30273.1| hypothetical protein N47_D30820 [uncultured Desulfobacterium sp.] Length = 364 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 102/379 (26%), Positives = 200/379 (52%), Gaps = 22/379 (5%) Query: 12 ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71 ++L I RK + ++ VL++A D + I ++ E TG A V+ G+I ++A Sbjct: 3 DVLSKLQTIAGRKTNLAITTAVLIRATDSGINISSTDMETGFTGFYSAEVEREGAIAINA 62 Query: 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131 +L++I++ + +I + + L E+ ++ + + + +FP + E + F+ Sbjct: 63 KMLFEIIKDFPN-EEIYINEIDNLWIEI-LNQNNVEYKMAGMNPDDFPGIPDVENITYFD 120 Query: 132 LASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDL--KLCAVATDGHRLAVA--EV 186 + +SV K+++E+T F TEE R ++NG++ ED KL V+TDG RLA E Sbjct: 121 IKASVFKDMIEKTIFITGITEEKRPHINGVYLEKILEDGINKLRLVSTDGSRLAKVDCEY 180 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 + ++++ P II+ +K + ++ + L + + ++K+ + S L E+ ++ +RL++G F Sbjct: 181 ENALELSEEPGIIISKKGLSDLNKFLDT-NKNIKIGYNNSNFVLKKENETVIIRLLEGNF 239 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P Y+ +I + + L + R+SI +S + V + +KL ++ NPD+G+ Sbjct: 240 PEYKYIIDKKEAFSITIERQKLLMMLKRMSIFTSDNFKGVIFNFDKEKLLVSSTNPDLGE 299 Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 + E M + Y+ P++I FN +Y ++ ++ I DD V+ L + S + ++ Sbjct: 300 SKEEMIINYDFDPLEIAFNVRYFIDTLNVIK-----DDNVIIMLINEKSPCLV-----EA 349 Query: 367 KNNKDNKVNAFYVLMPMRI 385 +NNK N V+MPMRI Sbjct: 350 ENNK----NFLSVIMPMRI 364 >gi|313122777|ref|YP_004033036.1| DNA polymerase iii, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279340|gb|ADQ60059.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 375 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 182/350 (52%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +D+ GSI V+AHL +IVRKL G + +F E + G ++ I+ +++ + S Sbjct: 61 IDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294 RL++G +P+ ++P + ++ ++L Q + R S+++ R AV+++L+ +D+ Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + N P++GK E + + I FN Y+ + +D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344 >gi|302390799|ref|YP_003826619.1| DNA polymerase III subunit beta [Acetohalobium arabaticum DSM 5501] gi|302202876|gb|ADL11554.1| DNA polymerase III, beta subunit [Acetohalobium arabaticum DSM 5501] Length = 365 Score = 147 bits (371), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 101/386 (26%), Positives = 205/386 (53%), Gaps = 25/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R + + + + I K+T+P+ +L++ + L++ + E+ I + A+ Sbjct: 1 MQIKIDRKNFYDGIQTVRKAISSKSTLPILSGILIETQEKKLKLVGTDLELGIECRVDAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A+ L +IVR+L + ++ K+N+ + IS G S F + P E+P Sbjct: 61 IIKDGAIVLPANHLANIVRELPNKELELELKKDNK----IEISCGLSQFKIHGSPADEYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + L+ + ++ R FA + +E R +L G I+ E+LK+ VATD + Sbjct: 117 LLPEVGSGIEYTLSQEKFQAMINRIKFATSDDESRPFLTGGLLSIDNENLKM--VATDSY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++++ + K II+P K + E+ ++L+S+D ++ +++++I +++ Sbjct: 175 RLAYTQLELDKDL-KNEKIIIPSKTLNELSKLLNSEDE-IRFLITDNQILFEFSEITIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ VIP ++ E+++ L A R ++++ +K +DKL + Sbjct: 233 RLIEGQFPNYKQVIPDNHKTEIKLKKKELLNATKRSALVARNNSNIIKTKFQNDKLMIES 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSSVF 358 + P++G+A E ++ + +I FN YL++++ +V+D +E++ L S Sbjct: 293 NAPEVGQAYEELSTSQHGDDTEIAFNANYLIDVL------KVIDNEEILIELSGELSPGV 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ D D N +V+MP+R Sbjct: 347 IKEVDND---------NYIHVIMPVR 363 >gi|116513230|ref|YP_812136.1| DNA polymerase sliding clamp subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092545|gb|ABJ57698.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 375 Score = 147 bits (370), Expect = 3e-33, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 182/350 (52%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L+ + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL G + +F E + G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294 RL++G +P+ ++P + ++ ++L Q + R S+++ R AV+++L+ +D+ Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + N P++GK E + + I FN Y+ + +D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344 >gi|160932423|ref|ZP_02079813.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753] gi|156868382|gb|EDO61754.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753] Length = 440 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 107/349 (30%), Positives = 188/349 (53%), Gaps = 17/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MKI ++S ++E + + R + K+T+ +LL+ +G L++ E+ IT I A Sbjct: 68 MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELGITTVIEA 127 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G + +SA L DIVR+L D ++ + ++ T+ I+ G S F + P SE+P Sbjct: 128 QVDEPGEVVLSARLFGDIVRRLPD-ETVTILVDEKMITQ--ITCGPSEFSIVGIPSSEYP 184 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S +L S +LK+++ +T FA+A + + G F+I ++L +V DG+ Sbjct: 185 ELPSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRLVSV--DGY 242 Query: 180 RLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ I + + I +VP K + E++++L +D +V++ + I IE S+ Sbjct: 243 RLAMRTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSV 302 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK-- 294 RL++GEF +Y+ IP E+ VN NL +V+RVS++ + R+++ V+ S D Sbjct: 303 ISRLLEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEI 362 Query: 295 --LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 C+T +GKA + ++ ++I FN +YLL+ + N +DEV Sbjct: 363 KISCVT----SIGKANDELSAQITGPEVEIGFNNRYLLDALRNADTDEV 407 >gi|11320915|gb|AAG33953.1|AF197893_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 104/388 (26%), Positives = 203/388 (52%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNIKNKIFIQNLQKINRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLL 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118 + + GS TVS L DI R + I K+N++ +I S++ L + P F Sbjct: 61 QEHISGSTTVSGRKLLDICRHSLHSSDIQIELKKNKM----HIISDKSHYVLTTLPADNF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + S +LK ++E+T F+M +++RYYLNG+ + + D L VATDG Sbjct: 117 PNNDNFNRISKIFIHSHILKEMIEKTQFSMGKQDVRYYLNGML--LEKIDHSLNMVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +RLA+A+ I+ +I + I++ R+ + E+ ++L+ +K+ + ++ I + IE Sbjct: 175 YRLAIAKT-IMQEIKIIQDFKIVITRQGIIELYKLLNISTKLIKILIGKNHIRIYIEQFI 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LI+G+FPNY+++ + NC L+Q++ R SI+S + V++ + + + Sbjct: 234 FTAQLIEGKFPNYESIFLIKKRNGIMFNCQLLKQSLLRASILSHEKFCGVEIHIKNGQFK 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + DN + A + N+ Y ++I N Y+L+I++ ISS + ++F L+ S++S Sbjct: 294 VLSDNQEEEIAEDMFNINYIGPEIEISINVYYILDILNAISS-----ENILFFLNHSHNS 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I +N + YV+M ++ Sbjct: 349 IQIEA---------ENDASTIYVVMLLK 367 >gi|315273165|ref|ZP_07869212.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120] gi|313616216|gb|EFR89294.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120] Length = 381 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/355 (28%), Positives = 186/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLV 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I +D KL Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWII--KDNKL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETNIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|217965933|ref|YP_002351611.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23] gi|255022506|ref|ZP_05294492.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-208] gi|290892038|ref|ZP_06555035.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071] gi|217335203|gb|ACK40997.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23] gi|290558632|gb|EFD92149.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071] gi|307569525|emb|CAR82704.1| DNA polymerase III, beta subunit [Listeria monocytogenes L99] Length = 381 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 101/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|315286762|ref|ZP_07872176.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596] gi|313630891|gb|EFR98583.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596] Length = 381 Score = 147 bits (370), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LDNGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|313625801|gb|EFR95417.1| DNA polymerase III, beta subunit [Listeria innocua FSL J1-023] Length = 381 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 186/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I +D KL Sbjct: 117 GLDSMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWII--KDNKL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|255520068|ref|ZP_05387305.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-175] Length = 381 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTXFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|116871424|ref|YP_848205.1| DNA polymerase III subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740302|emb|CAK19420.1| DNA polymerase III, beta subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 381 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|218781945|ref|YP_002433263.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] gi|218763329|gb|ACL05795.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 376 Score = 146 bits (369), Expect = 4e-33, Method: Compositional matrix adjust. Identities = 108/396 (27%), Positives = 195/396 (49%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + L+ + I RK T P++ +VL+ A + + A+ EI G PA+ Sbjct: 1 MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+IT+ L++IVR+ GA EN V I + + ++FP Sbjct: 61 VEEEGTITIPGKKLFEIVREFPHGAIDVRDLENGW---VQIFKDKVQYKIVGMDPNDFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHF--AMATEEIRYYLNGIFFH--INEEDLKLCAVAT 176 E E + FEL S V +++E+T+ M++EE R +L G++ + EE L V+T Sbjct: 118 LPEVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVST 177 Query: 177 DGHRLAVAEVDIVAQIAKMP-------SIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 DG+RLA VD + P +I+P+K + EILR+ S + + + ++ Sbjct: 178 DGNRLA--RVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRV-SEGGGKISLGVQKNYFV 234 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + E+ ++ RL++GE+P+Y VIP + + + R+SI+ S R +AV+ Sbjct: 235 IQKEAETIIGRLVEGEYPDYNLVIPNDLETFFEIEKQPFVSILKRMSILCSERYRAVRFK 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + +L ++V+NP++G + E M + +N + FN ++ ++ ++ + SD + V Sbjct: 295 VDPQRLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKSDMI----KVNI 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 LDSS + +D V+MPMR+ Sbjct: 351 LDSSKPCILEGSEDP----------RYLSVIMPMRM 376 >gi|289433375|ref|YP_003463247.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169619|emb|CBH26153.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313640126|gb|EFS04744.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL S4-171] Length = 381 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLIT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LDNGQVEVSSNSPEVGNVSE--NVFSQSFTGEEVKISFNGKYMMDALRAFEGDDI 347 >gi|16799081|ref|NP_469349.1| DNA polymerase III subunit beta [Listeria innocua Clip11262] gi|16412423|emb|CAC95235.1| DNA polymerase III, beta chain [Listeria innocua Clip11262] Length = 381 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 186/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I +D KL Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWII--KDNKL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|325123495|gb|ADY83018.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2] Length = 233 Score = 146 bits (369), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 78/249 (31%), Positives = 141/249 (56%), Gaps = 27/249 (10%) Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 MA +++R+YL G I+E L+ AV TDGHRLA+ E+ + +++ IVPRKAVGE Sbjct: 1 MAVQDVRFYLTGTLLEIDENQLR--AVTTDGHRLALCEITASSTSSQLVQAIVPRKAVGE 58 Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLS-----------MSVRLIDGEFPNYQNVIPCS 256 + R+LS +D + + + +++ I + S + +LIDG+FP+Y+ VIP Sbjct: 59 LQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRG 118 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 DK + ++ +Q++ RV+I+S+ +++ V L+ + D L + +NP+ +AIE + + Y Sbjct: 119 GDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQ 178 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 P+++ FN +YLL+++ + D+V + +N SV ++ + Sbjct: 179 NIPLEMSFNAQYLLDVLGVLDG-----DDVNMSMTEANQSVLVQDPAHPDQT-------- 225 Query: 377 FYVLMPMRI 385 YV+MPMR+ Sbjct: 226 -YVVMPMRV 233 >gi|218678820|ref|ZP_03526717.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 894] Length = 148 Score = 146 bits (368), Expect = 5e-33, Method: Compositional matrix adjust. Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 14/162 (8%) Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 S+++I + I S+ M+ +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R Sbjct: 1 SDAKIRMTIGSIVMTSKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERG 60 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 +AVKL+LS +L +TV+NPD G A E + V Y+ M+I FN KYLL+I +S Sbjct: 61 RAVKLALSEGQLMLTVNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG----- 115 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +E +F L + S IR D +A YVLMPMR+ Sbjct: 116 EEAIFLLADAGSPTLIRDTAGD---------DALYVLMPMRV 148 >gi|325124857|gb|ADY84187.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 375 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 106/350 (30%), Positives = 181/350 (51%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPIS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL G + +F E + G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEGLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294 RL++G +P+ ++P + ++ ++L Q + R S+++ R AV+++L+ +D+ Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + N P++GK E + M I FN Y+ + +D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDMTISFNPDYMAAALRASVTDSVI 344 >gi|83814447|ref|YP_444160.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855] gi|83755841|gb|ABC43954.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855] Length = 377 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 105/363 (28%), Positives = 184/363 (50%), Gaps = 20/363 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +D+LE L + K+T+P+ +L + + L + A+ EI I +P Sbjct: 1 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 60 Query: 61 VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G+ I V A L D +R L D I F +++ ++ G ++ + Sbjct: 61 FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S++P E E + + +L +++T FA++ + +R + G++F ++EE+ + VA Sbjct: 118 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSV--VA 175 Query: 176 TDGHRLAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TDGHRL + ++ A + IVP KA RI+ D V + +S + Sbjct: 176 TDGHRLVKLTLPELRADTSA--DFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGE 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLID +PNYQ+VIP ND+ L VN ++ AV RV + SS ++L +++D Sbjct: 233 SRVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADT 292 Query: 295 LCMTVDNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ ++ + +A E+++ Y+ PM+I FN +YL E++ N+ DEVVF L S Sbjct: 293 VTISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSP 347 Query: 354 NSS 356 N + Sbjct: 348 NRA 350 >gi|268315580|ref|YP_003289299.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252] gi|262333114|gb|ACY46911.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252] Length = 379 Score = 146 bits (368), Expect = 6e-33, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 177/349 (50%), Gaps = 13/349 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV +D+L+ L ++ K T+P+ +L +A DG L + A+ EI I +P Sbjct: 1 MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60 Query: 61 VDV------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +++ + V A L + +R L D + F + + G ++ + F Sbjct: 61 LELQNGKEGARRVAVPARRLLETLRALPD-LPVQFSADESFNVTLTTDQG--HYKMVGFD 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +++P+ E + +S + +++L+ +++T FA++ + +R + GIFF + E+ ++ V Sbjct: 118 GADYPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRV--V 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRL + + + IVP KA + ++ + D + + + E + + Sbjct: 176 ATDGHRLVRLRLRELVSETPL-EFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGP 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + RLID +PNY+ VIP ND+ L V+ AV RV + +S V+L+L D Sbjct: 235 VRIISRLIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDH 294 Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + ++ + +A E + Y+ PM I FN YL E++ N+ SDEVV Sbjct: 295 VEIAAEDIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDSDEVV 343 >gi|294505818|ref|YP_003569876.1| DNA polymerase III, beta chain [Salinibacter ruber M8] gi|294342146|emb|CBH22924.1| DNA polymerase III, beta chain [Salinibacter ruber M8] Length = 422 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 105/361 (29%), Positives = 183/361 (50%), Gaps = 20/361 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +D+LE L + K+T+P+ +L + + L + A+ EI I +P Sbjct: 46 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 105 Query: 61 VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G+ I V A L D +R L D I F +++ ++ G ++ + Sbjct: 106 FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 162 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S++P E E + + +L +++T FA++ + +R + G++F ++EE+ + VA Sbjct: 163 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSV--VA 220 Query: 176 TDGHRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TDGHRL + ++ A + IVP KA RI+ D V + +S + Sbjct: 221 TDGHRLVKLTLPELRADTSA--DFIVPEKATKLAGRIVE-DDEICTVRVDDSHVSFEFGE 277 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLID +PNYQ+VIP ND+ L VN ++ AV RV + SS ++L +++D Sbjct: 278 SRVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADT 337 Query: 295 LCMTVDNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ ++ + +A E+++ Y+ PM+I FN +YL E++ N+ DEVVF L S Sbjct: 338 VTISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSP 392 Query: 354 N 354 N Sbjct: 393 N 393 >gi|167762355|ref|ZP_02434482.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC 43183] gi|167699998|gb|EDS16577.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC 43183] Length = 374 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 102/345 (29%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 DSDADGRFAVTAKTLLDALKEIPE--QPLTFDINTSSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S E E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGENAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E + +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPANLMKNLLPKEQGTVTIEFDERNAVVTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E+ Y PM I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISADEVV 340 >gi|284041473|ref|YP_003391813.1| DNA polymerase III subunit beta [Conexibacter woesei DSM 14684] gi|283945694|gb|ADB48438.1| DNA polymerase III, beta subunit [Conexibacter woesei DSM 14684] Length = 369 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 178/343 (51%), Gaps = 6/343 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ R ++L L R+ + I V L A G +E++A+ E+ + +PA Sbjct: 1 MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGLRVPLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS+ + A L+ D+VR L + E +V + G++ F++++ +FP Sbjct: 61 IEREGSVVLPARLIVDVVRSLSGPTATLELRPAE--QDVELVAGNAQFHIRTLRAEDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + V R + + +E R L GI +E +L++ VATD +R Sbjct: 119 FPEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRM--VATDSYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSV 239 L+V E + + VP +A+ E+ R++ D + V + ++++ I + +S Sbjct: 177 LSVKETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ ++P S + EL + + + V R+S+++ + ++LS + +L ++ Sbjct: 237 RLIEGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLAQ-KNAPLRLSFAPGELTVSA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 PD+G+A ES+ V + P +I FN +L + ++++ S +V+ Sbjct: 296 QTPDIGEARESLPVAFQGEPFEIGFNPDFLRDGLESVGSGDVM 338 >gi|47097284|ref|ZP_00234842.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|47014329|gb|EAL05304.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a F6854] Length = 378 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|300866651|ref|ZP_07111338.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506] gi|300335360|emb|CBN56498.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506] Length = 387 Score = 146 bits (368), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 111/404 (27%), Positives = 205/404 (50%), Gaps = 38/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +SD+ L R + + T PV +VLL A++ + +G ++ I + Sbjct: 1 MKLICTQSDLNSNLSLVSRAVPSRPTHPVLANVLLVADEKTQRVSLTGFDLSLGIRTSFA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESE 117 A VD GS T+ A LL DI+ +L DG +IS +++ G + ++ + ++ E Sbjct: 61 AQVDEGGSFTLPAKLLNDIISRLPDG-EISL--DDDAGEAIATVTSSSGKYTVRGMGPEE 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E E L L ++ T FA + +E + L G+ + ++ L+ A TD Sbjct: 118 FPELPEIEGGELINLPPEALIAGLKGTLFATSPDETKQVLTGVHLKVQQDSLEFAA--TD 175 Query: 178 GHRLAVAEVDIVAQI----AKMPS--------IIVPRKAVGEILRILSSKDSS--VKVSL 223 GHRLAV E V+ A +P+ I VP KA+ EI +++++ SS V + L Sbjct: 176 GHRLAVVETAKVSDREYDEASLPTQESSAIFEITVPAKALREIEKMVAAGQSSEPVALHL 235 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 + +I ++ R ++G++PNY+ ++P S ++ + + +L AV+R+++++ + Sbjct: 236 DQGQIVFEWADQRLTTRTLEGQYPNYRQLLPRSFERLITLERRSLLAAVERIAVLADQKN 295 Query: 284 QAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +K S+ ++ K+ ++VD D+G ESM+ + +DI FN KYL++I+ S Sbjct: 296 NILKCSIDAENQKVTLSVDAKDVGSGTESMSAQISGESIDIAFNVKYLIDILKTAPS--- 352 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ + + V IR VNA +++MP+++ Sbjct: 353 --PEIQMQLNEATAPVIIR---------PLGGVNATFLVMPVQL 385 >gi|332885445|gb|EGK05694.1| DNA polymerase III, beta subunit [Dysgonomonas mossii DSM 22836] Length = 374 Score = 145 bits (367), Expect = 7e-33, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 8/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + +L L ++I KNT+P+ LL+ L + A+ E + ++ + Sbjct: 1 MRFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLSLTAADSETRLVTSLEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D +++L D + L T + +G NF Q+ ++P Sbjct: 61 EADGNGKFAVNAKNLLDPLKELPDQPLTFEINSDNLETFIFFHNGKYNFIGQN--GEDYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 K+ +E S + VL + + RT FA A +E+R +NG++F I+ EDL VA+DG Sbjct: 119 QPKQLKETAVSLTIEPQVLFSGINRTLFASADDELRPVMNGVYFDISTEDLTF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ A+ S I+P+K + IL + +V++ E+ ++ + S +M+ Sbjct: 177 HKLVRCKT-LSAKGAERASFILPKKPANLLRAILPKESETVEIKFDENNAYIKMSSYTMT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R I+G +PNY +VIP +N ++ ++ + A+ RVS+ S+ V+L LS + ++ Sbjct: 236 CRFIEGRYPNYNSVIPQNNPNKVILDRLSFLNALKRVSVFSNQASNLVRLQLSDKNIIVS 295 Query: 299 VDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D A E+++ Y PM I F +L++I++NI S ++ Sbjct: 296 AQDIDFSTAAEETISCDYTGTPMSIGFKSSFLIDILNNIPSSDI 339 >gi|16802050|ref|NP_463535.1| DNA polymerase III subunit beta [Listeria monocytogenes EGD-e] gi|46906226|ref|YP_012615.1| DNA polymerase III subunit beta [Listeria monocytogenes serotype 4b str. F2365] gi|47093012|ref|ZP_00230791.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b H7858] gi|224498305|ref|ZP_03666654.1| DNA polymerase III subunit beta [Listeria monocytogenes Finland 1988] gi|224503075|ref|ZP_03671382.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL R2-561] gi|226222641|ref|YP_002756748.1| DNA polymerase III, beta chain [Listeria monocytogenes Clip81459] gi|254824778|ref|ZP_05229779.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|254827426|ref|ZP_05232113.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165] gi|254830706|ref|ZP_05235361.1| DNA polymerase III subunit beta [Listeria monocytogenes 10403S] gi|254899684|ref|ZP_05259608.1| DNA polymerase III subunit beta [Listeria monocytogenes J0161] gi|254913113|ref|ZP_05263125.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254930867|ref|ZP_05264226.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|254937494|ref|ZP_05269191.1| DNA polymerase subunit III [Listeria monocytogenes F6900] gi|254991924|ref|ZP_05274114.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-064] gi|255026749|ref|ZP_05298735.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-003] gi|284803264|ref|YP_003415129.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578] gi|284996405|ref|YP_003418173.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923] gi|300763384|ref|ZP_07073382.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL N1-017] gi|16409361|emb|CAC98217.1| DNA polymerase III, beta chain [Listeria monocytogenes EGD-e] gi|46879490|gb|AAT02792.1| DNA polymerase III, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47018580|gb|EAL09334.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b H7858] gi|225875103|emb|CAS03791.1| DNA polymerase III, beta chain [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599804|gb|EEW13129.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165] gi|258610096|gb|EEW22704.1| DNA polymerase subunit III [Listeria monocytogenes F6900] gi|284058826|gb|ADB69767.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578] gi|284061872|gb|ADB72811.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923] gi|293582412|gb|EFF94444.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|293591115|gb|EFF99449.1| DNA polymerase III [Listeria monocytogenes J2818] gi|293594017|gb|EFG01778.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300515661|gb|EFK42710.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL N1-017] gi|328468323|gb|EGF39329.1| DNA polymerase III subunit beta [Listeria monocytogenes 1816] gi|328476146|gb|EGF46852.1| DNA polymerase III subunit beta [Listeria monocytogenes 220] gi|332310335|gb|EGJ23430.1| DNA polymerase III subunit beta [Listeria monocytogenes str. Scott A] Length = 381 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|104773259|ref|YP_618239.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422340|emb|CAI96848.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 375 Score = 145 bits (367), Expect = 8e-33, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 181/350 (51%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L+ + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL G + +F E + G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294 RL++G +P+ ++P + ++ ++ Q + R S+++ R AV+++L+ +D+ Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + N P++GK E + + I FN Y+ + +D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344 >gi|89885797|ref|YP_515995.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118] gi|89347795|gb|ABD71997.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118] Length = 378 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 114/401 (28%), Positives = 196/401 (48%), Gaps = 43/401 (10%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEI------- 53 K+T ++ + LL I+ R +++ + +VLL +DG I A G ++E+ Sbjct: 4 KLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDG--RITAVGTDLEVEVNATQH 61 Query: 54 ----TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109 TGA+ S TV + L DI++ + + ++ EN + ++ + F Sbjct: 62 VGSFTGAL--------STTVESRKLMDILQTMANDEPVTLASENP--DHLVLTGANGTFK 111 Query: 110 LQSFPESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L P +FP + Y +F + VLK L+E+T FAMA +IRYYL G+ F + Sbjct: 112 LSCLPADDFPRMEIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVVEGGR 171 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L +C +DG R+A EV + + I +I+PRK+V E+ R+ D V+V LS ++ Sbjct: 172 LTVCT--SDGFRVATDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQA 229 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + +L +L++G+FP+ + V+P ND + ++ + L A+ R +++ S ++ V+ Sbjct: 230 RIRFGALEFVTKLVEGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRF 289 Query: 289 SLSSD----KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 L D L + N SM V Y+ +DI FN KYLL+ + + D++V Sbjct: 290 ILDHDLISGHLKVESSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLV-- 347 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + F S + G + + D + Y+LMPMRI Sbjct: 348 -LAF------SHTLVPGAALMTLPSDD---HFKYILMPMRI 378 >gi|294055612|ref|YP_003549270.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM 45221] gi|293614945|gb|ADE55100.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM 45221] Length = 375 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 105/396 (26%), Positives = 194/396 (48%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L ++ ++T+P+ +VL++A DG + + + ++ I I A Sbjct: 1 MKFKINQDHFSNGLQQVLNVVATRSTMPILSNVLIEAADGHISLTTTNLDLGIRCRIKAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G IT+ L IVR+L Q F E + I+ G S F + EFP Sbjct: 61 IETPGGITLPVRKLATIVREL---PQSEVFVEAGDNNQAKITSGGSLFKIMGISTEEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + FEL S + N+++ + +T+E RY LNG++F N D KL VATDG R Sbjct: 118 LPTFENRHVFELGQSEVVNMLKSVSYGQSTDENRYILNGVYF--NFADDKLTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232 LA+ ++ S+I+P K V E+ R+L D +K++ ++ ++ I Sbjct: 176 LALTALETEITEDNAGSLILPAKTVAELERLLGKGDK-LKIAFNDRQVAFEISIGEDSDS 234 Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + L + ++++G +PNY+ VIP + +++ + + V R ++++S + +VKL Sbjct: 235 GLADQLYLVSKIVEGNYPNYRQVIPKETEHRVKIERELMLECVHRAALVTSDKSNSVKLK 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +S + L ++ + + G++ ESM + Y+ + + FN ++L+E + ++ DE Sbjct: 295 VSKNLLEISGSSSEYGESHESMAIAYDGPEVQVAFNPQFLMEPLKALTKDE--------- 345 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VF KD+ S N V+MP+R+ Sbjct: 346 -------VFFEFKDELSPGLFKTLDNFICVIMPLRL 374 >gi|126662353|ref|ZP_01733352.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38] gi|126625732|gb|EAZ96421.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38] Length = 373 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 177/343 (51%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L++ AS E +T + Sbjct: 2 MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELDNNQLKVSASDLETTMTSTLEID 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ + A LL DI++ + ++F E+ + V IS + + P EFP Sbjct: 62 STSQGSVAIPAKLLLDILKTFPE-QPLTFTVED--NSTVEISSNSGKYAIAYAPGEEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VL V +T FA +++R ++G+FF + E L VATD H+ Sbjct: 119 AVVLDDPSKTLVPAEVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPE--GLIFVATDAHK 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L A D+ A +++ I+P+K + + IL + D+ V + ++S + E+ ++ Sbjct: 177 LVKYARTDVKA--SQVADFIMPKKPLNILKGILGASDAEVSIEYNDSNATFSFENYVLTC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L +N +V RV+I ++ ++L ++ +L ++ Sbjct: 235 RLIDGKYPNYEAVIPKENPNKLLINRVQFLNSVRRVAIFANKTTHQIRLKIAGTELNISA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L E+++N+SSDE+ Sbjct: 295 EDIDYSNKADERLTCDYQGDDMQIGFNSRFLTEMLNNLSSDEI 337 >gi|254851840|ref|ZP_05241188.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503] gi|258605132|gb|EEW17740.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503] Length = 381 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIIEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 ++ L RL++G +P+ +IP EL +N QA+DR S+++ R +KL + Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 L + ++ ++ ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347 >gi|187250426|ref|YP_001874908.1| DNA polymerase III subunit beta [Elusimicrobium minutum Pei191] gi|186970586|gb|ACC97571.1| DNA polymerase III, beta subunit [Elusimicrobium minutum Pei191] Length = 369 Score = 145 bits (366), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 113/388 (29%), Positives = 200/388 (51%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + LE L + + T+P+ + L++ +G +++ + E+ I A Sbjct: 1 MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+T+ + DI++ L + +I+ + +V+I G S F++ P+SE+P Sbjct: 61 ILEEGSVTIPLKEVSDILKNLPNDKEINLTVGED--NKVHIKSGKSKFWVIGTPKSEYPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L ++ +VE+T F+ +T+E RY LNG+ + + K VATDG R Sbjct: 119 IPEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWV--KTGNKFEVVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRIHLNIESLS 236 LA+A VD + K II+P K + E+LR S S+D ++ +S++ +++ NI+ + Sbjct: 177 LALA-VDTIESDTKDFKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETT 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 RLI+G FPNY+ VIP + + + R S+ ++ VK SL+++ L Sbjct: 236 YISRLIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLK 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T ++ M + E M V Y P +I FN +Y+L+++ NIS+ ++V F ++ Sbjct: 296 ITSNSQKMDFSDE-MKVEYTAEPFEISFNPQYVLDVLKNIST-----EKVEFSFINAAQP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I + NN K YV+MP+R Sbjct: 350 VLI-----EEINNTKFK----YVIMPVR 368 >gi|196230262|ref|ZP_03129125.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428] gi|196225859|gb|EDY20366.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428] Length = 280 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 85/254 (33%), Positives = 146/254 (57%), Gaps = 6/254 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V + +L L ++ + T+P+ +VLLQA L + + ++ ++GAI A Sbjct: 1 MKFSVSKEKLLAGLQTVQNVVSTRTTLPILSNVLLQAEGDQLRLTTTDLDVGVSGAITAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ T+ A L++IVR+L A+I E + +I G S F + PE EFP Sbjct: 61 VEKPGATTLPARRLFNIVREL-PAAEI--IVEVDSKNVASIRCGQSFFKILGLPEEEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ +F + VL++ +++T +A++T+E RY LNGI F E K+ VATDG R Sbjct: 118 LPKQTDARTFTIGQQVLRDALKKTSYAISTDETRYVLNGILFSFKEN--KVTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++++ ++ IIVP KAV E+ R+L + V++S+ E+++ I ++ + Sbjct: 176 LALVDLEVEFPRSQEVDIIVPTKAVTELGRLLGD-EGDVRLSVEENQVAFQIGDTLLASK 234 Query: 241 LIDGEFPNYQNVIP 254 LI+G +PNY+ VIP Sbjct: 235 LIEGNYPNYRQVIP 248 >gi|86133972|ref|ZP_01052554.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152] gi|85820835|gb|EAQ41982.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152] Length = 372 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 95/344 (27%), Positives = 176/344 (51%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L++ AS E ++ + Sbjct: 1 MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENQLKVSASDLETTMSSVVDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL D ++ D ++F E + E++ G + + F EFP Sbjct: 61 SDSSGSIAVSARLLLDTLKTFPD-QPLTFKTEGDNTIEISSDQG--KYDMAYFGGDEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +++L + +T FA +++R ++G+FF + + L VATD H+ Sbjct: 118 AVSLPSPSKTVVPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + D+ A + I+P+K + + IL +S V + +++ +++ + Sbjct: 176 LVKYSRTDVTAD--QTAEFIMPKKPLNLLKGILGGSESDVTIEYNDANAKFTFDNIVLVC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L V+ + +V RVSI SS ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D KA E ++ Y M I FN ++L E+++N++S +V+ Sbjct: 294 EDLDFSNKADERLSCDYQGDDMQIGFNSRFLSEMLNNLNSSDVL 337 >gi|87198663|ref|YP_495920.1| DNA polymerase III beta subunit family protein [Novosphingobium aromaticivorans DSM 12444] gi|87134344|gb|ABD25086.1| DNA polymerase III beta subunit family protein [Novosphingobium aromaticivorans DSM 12444] Length = 415 Score = 145 bits (365), Expect = 1e-32, Method: Compositional matrix adjust. Identities = 100/357 (28%), Positives = 176/357 (49%), Gaps = 43/357 (12%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS------VDVCGSI-----TVSAH 72 K+TIP+ V ++A+DG+L + + I ++P S + SI V A Sbjct: 34 KDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATCVPAR 93 Query: 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132 L IV+++ A ++ + + V I+ G S F + P +FP ++ +SF + Sbjct: 94 ALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEHSFSI 153 Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192 A+ L+++ R A++TEE RYYLNG++ H + D + ATDGHRLA D Sbjct: 154 AAGALRDVFARVEHAISTEETRYYLNGVYMHPQDLDQRF--AATDGHRLARLVQDGPDGA 211 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--------SRIHLNIES---------- 234 A P++I+ R+ V + ++L D++ KV S SR + ++S Sbjct: 212 ASFPAVIIGRRTVAVLDKLL---DAAGKVDTSTSDDADKACSRPMVEVDSDSNGRVIYWA 268 Query: 235 --------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +++ + +DG FP+Y VIP + L V+ L A+ RV+ + S + +AV Sbjct: 269 MPAPDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTRAV 328 Query: 287 KLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 KL L ++K ++ +P++G A+E + Y P+ I FN Y + +++D+V+ Sbjct: 329 KLELDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSAVATDKVL 385 >gi|157273494|gb|ABV27393.1| DNA polymerase III beta subunit [Candidatus Chloracidobacterium thermophilum] Length = 391 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 40/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG------LLEIKASGPEIEIT 54 M+ +V ++D+L+ L ++E+K TIP+ ++LL G LL + + + + Sbjct: 1 MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + PA++ G+ + A L DIVR L D A I F +++ +NI+ S F L S Sbjct: 61 TSCPATIRHSGTALLPARRLLDIVRNLPD-ADIHF--KSDGSGNMNITCERSRFRLFSPA 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN----EEDLK 170 +PS E + + + +++ ++ R FA + EE RY LNG+ + ++D Sbjct: 118 PEGYPSLPETPAL-PLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDAS 176 Query: 171 --LCAVATDGHRLAVAE-VDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSV 219 L VATDGHRLA+ E + V +P S ++P+K + EI R L++ ++ Sbjct: 177 GLLRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIAR-LAADTTAT 235 Query: 220 KVSLSESRIH--LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 +++ + H I S + RL+ G+FPNY+ V+P +N+ + L A RV + Sbjct: 236 EIAFGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGV 295 Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 ++ AVKL + ++ + +P+ G+A+E+++V Y + I FN YL++ + Sbjct: 296 VADETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAH 355 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + F + + +R D D + + YV+MPMR Sbjct: 356 S-----TQTRFEFKDEITQIQMRPVDGDGYDYR-------YVVMPMR 390 >gi|325685105|gb|EGD27236.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 375 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 105/350 (30%), Positives = 181/350 (51%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL G + +F E + G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294 RL++G +P+ ++P + ++ ++L Q + R S+++ R AV+++L+ +D+ Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + N P++GK E + + I FN Y+ + +D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344 >gi|163788818|ref|ZP_02183263.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1] gi|159876055|gb|EDP70114.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1] Length = 372 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 172/342 (50%), Gaps = 7/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + + L I AS E ++ I Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELSQSKLTISASDLETTMSSTIDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI + A LL D ++ + ++F E E++ +HG + L +EFP+ Sbjct: 61 SDSEGSIALPARLLLDTLKTFPE-QPLTFVVEENNTVEISSNHG--KYALAYADGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + +L + +T FA +++R ++G+FF ++++L VATD H+ Sbjct: 118 AVSIEDASKTTITGDILATAISKTIFAAGNDDLRPVMSGVFFQFSQDNLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L D V+ + I+P+K + + IL+ D V V +ES E+ + R Sbjct: 176 LVKYTRDDVSA-TETAEFIMPKKPLNLLKGILAGSDDGVLVEYNESNAKFTFENSVLICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ T +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLVIDRTQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D KA E + Y M I FN ++L E+I+N++SD V Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMINNLNSDNV 336 >gi|289548994|ref|YP_003473982.1| DNA polymerase III subunit beta [Thermocrinis albus DSM 14484] gi|289182611|gb|ADC89855.1| DNA polymerase III, beta subunit [Thermocrinis albus DSM 14484] Length = 362 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 108/385 (28%), Positives = 197/385 (51%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V+R ++ E+L A E+K+ +PV + ++A DG L + A+ E + +PA Sbjct: 1 MRLYVDREELAEVLKKAQAATEKKSALPVLNNFKIKAEDGHLAVYATDLENFLFLHLPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ V+A +++R L +E++L +S G S F L EFP Sbjct: 61 VEEEGTLAVNAKKFTEVIRSLTSAEVYLHLREDKL----VVSGGRSTFKLAVADPEEFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + AS++LK +++T +A++ E+ RY L G++ H E+ K+ V +DGHR Sbjct: 117 FPEISGSAAQINASTLLKA-IDKTEYAISKEDSRYALQGLYLHRVED--KIHFVGSDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ A + S+I+PRK++ + L V + E+ H+ E+ ++SVR Sbjct: 174 LALFWTYSDADV----SVILPRKSLKVLEGFLKETVGGVSIFKDENFAHVKGENWTLSVR 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GE+P+Y +VIP ++ V+ +L ++ R+S ++ VK+S + + + Sbjct: 230 LLEGEYPDYLSVIPQDFQTQVVVDRDSLIASIKRLSAIAESSAFPVKISFMENLAVLEIT 289 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 P+ G+ + + V P++I FN KYLLE +D+ V+ V +S V + Sbjct: 290 EPEFGEGRDEVEVELEGEPVEIGFNGKYLLEALDSFDVRRVILKAV-----DPDSPVLME 344 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +D + K ++MPMR+ Sbjct: 345 SEDPE-------KDPYLCLVMPMRL 362 >gi|224535481|ref|ZP_03676020.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus DSM 14838] gi|224522895|gb|EEF92000.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus DSM 14838] Length = 374 Score = 144 bits (364), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L I S E + ++ + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELKDGTLSITVSDSETTMVTSVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A + D ++++ + Q F+ N E+ + + + + L EFP Sbjct: 61 ESDADGRFAVAAKTILDALKEIPE--QPLSFEVNTNSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ +SVL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDASVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K I +L + V + E +E M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRMQLVGALRRVSIFSSQASSLIKLRMQPNQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y+ PM I F +L++I++NI++DEV+ Sbjct: 296 AQDIDFSTSAEETLACQYDGNPMSIGFKSTFLIDILNNIAADEVI 340 >gi|329955850|ref|ZP_08296653.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056] gi|328525230|gb|EGF52280.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056] Length = 374 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 ESDTDGRFAVTAKTLLDALKEIPE--QPLTFDINTNSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + V + E + +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENRIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E+ Y PM I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQTCQYTGNPMSIGFKSTFLIDILNNISADEVV 340 >gi|116619147|ref|YP_821303.1| DNA polymerase III subunit beta [Candidatus Solibacter usitatus Ellin6076] gi|116222309|gb|ABJ81018.1| DNA polymerase III, beta subunit [Candidatus Solibacter usitatus Ellin6076] Length = 372 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV +SD++ L + ++E+K TIP+ +VLL+A D + + A+ E+ I + PA Sbjct: 1 MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS TV A L D +R L +G F +N + I+ G S + FP Sbjct: 61 VKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWAS---ITSGRSRTRIAGMSRESFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ L +++ RT FA++ EE R+ LNG + E L + VATDGHR Sbjct: 118 LPQMPEPIA-QVPVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTM--VATDGHR 174 Query: 181 LAVAEVDIV-AQIAKMP-SIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLS 236 LA + + + A P +VP+KA+ E+ ++ + + + V+ ++ + I Sbjct: 175 LAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRL 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + R + G FP+Y+ V+P + ++ +R A++RV+ + R +A+++ +S ++ Sbjct: 235 LITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQFADERSRAIRVQFNSGEVR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + + G++ ES+ Y ++I FN +YLL+ + IS D V F L S+ Sbjct: 295 VFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAISQ-----DHVAFELKDQKSA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 +R D + + YV+MPMRI Sbjct: 350 GELR-------PAGDAIADQYRYVVMPMRI 372 >gi|298209075|ref|YP_003717254.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559] gi|83849002|gb|EAP86871.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559] Length = 362 Score = 144 bits (363), Expect = 2e-32, Method: Compositional matrix adjust. Identities = 100/334 (29%), Positives = 174/334 (52%), Gaps = 14/334 (4%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L++LG +I NT+P+ + L + ++ L+I AS E + I D GSI V Sbjct: 4 LQVLGG---VINTSNTLPILDNFLFELDNNSLKISASDLETTMVSTIDVESDSQGSIAVP 60 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPSTKEEEYVYS 129 A LL D ++ + ++F KE+ E++ +HG Y ++ + E FP+ E Sbjct: 61 ARLLLDTLKTFPE-QPLTFVKEDNNTIEISSNHGK---YAVAYADGEEFPNAVALEDPSQ 116 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA-VAEVDI 188 L VL + +T FA +++R ++G+FF ++ L VATD H+L + D+ Sbjct: 117 TVLNGDVLATAISKTIFASGNDDLRPVMSGVFFQFAKDGLTF--VATDAHKLVKYSRTDV 174 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 A I+P+K + + IL+ DS V V +ES +++ + RLIDG++PN Sbjct: 175 SA--TNEAEFIMPKKPLTLLKGILAGSDSDVTVEYNESNARFTFDNVELICRLIDGKYPN 232 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KA 307 Y+ VIP N +L ++ + +V RVSI S+ V+L ++ +L ++ ++ D KA Sbjct: 233 YEAVIPKENPNKLTIDRSQFLNSVKRVSIFSNKTTHQVRLKIAGSELNISAEDIDYSNKA 292 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 E + Y M I FN ++L E+++N++++EV Sbjct: 293 EERLTCAYQGDDMQIGFNSRFLSEMLNNLNANEV 326 >gi|330752164|emb|CBL87124.1| DNA polymerase III, beta chain [uncultured Flavobacteria bacterium] Length = 373 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/346 (29%), Positives = 170/346 (49%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L L +I+ NT+P+ H L+ G L I AS E +T A+ + Sbjct: 1 MKFIVSSSKLLRSLQTVSGVIQSNNTLPILDHFLVHLTPGKLTITASDIETTMTTAL--A 58 Query: 61 VDVCGSIT--VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 VD IT + A +L D V+ + Q F N + +S + L SE+ Sbjct: 59 VDSSEEITAAIPAKILLDTVKSFPE--QPLTFTLNSSTHSLEVSSDFGKYALAYVDPSEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + S ++ L + +T FA +++R ++G+FF E L VATD Sbjct: 117 PKSASLNEADSINISEKTLGTAINKTLFAAGNDDLRPVMSGVFFQFTNEGLTF--VATDA 174 Query: 179 HRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 H+L + DI+A +I+P+K + + L S ++V +S ++ +++ Sbjct: 175 HKLVRYSRKDILA--PSTAELILPKKPLTLLKTTLGSGGNNVSISYTDQNAQFTYGEVTL 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLIDG++PN+Q VIP N L + L +V R+SI S+ VKL ++ ++L + Sbjct: 233 LCRLIDGKYPNFQAVIPKDNPNHLVADRMALLSSVKRISIFSNKTTHQVKLKVAGNELNI 292 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ D KA E + Y M+I FN ++L+E++ N+ SDE++ Sbjct: 293 SAEDLDFSNKANERLTCNYQGTDMEIGFNSRFLIEMLSNLESDEII 338 >gi|225851072|ref|YP_002731306.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1] gi|225645102|gb|ACO03288.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1] Length = 364 Score = 144 bits (363), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 198/386 (51%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ ++++D+ LL A E+K+ +P+ + LL+A D L ++ + E+ ++ ++ A Sbjct: 1 MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSVFAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ V+A L DI R L +++ L I G + + L P +FP Sbjct: 61 IENEGTACVNAKKLTDISRLLPSNEVYIKLEDSTL----KIKSGKTKYNLPVAPSEDFPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +F ++ L+ + +T +A + EE RY L G+ F ++ + VATDGHR Sbjct: 117 MYPFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGNIDV--VATDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ + +IIVP+KA+ E+ ++L+ + V+V+ ++ + + R Sbjct: 175 LALYTIERTGK--GDINIIVPQKALNELKKLLTGLED-VEVAATDQYAFFRTKEWILMTR 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FP+Y VIP +E++++ +++ RVS + + +KL+L + L + Sbjct: 232 LLEGVFPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSV 291 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSSVFI 359 + + G+A++ ++V Y I FN KYL+E + EV+D DEVV + + N+ I Sbjct: 292 SVEYGEAVDELSVDYEGEEYSIGFNAKYLIEAV------EVIDGDEVVIKFTNPNAQTLI 345 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D++ + ++MPM I Sbjct: 346 IPADQEDRYKA--------IVMPMEI 363 >gi|160882257|ref|ZP_02063260.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483] gi|237718359|ref|ZP_04548840.1| DNA polymerase III [Bacteroides sp. 2_2_4] gi|293372862|ref|ZP_06619236.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f] gi|299146574|ref|ZP_07039642.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23] gi|156112346|gb|EDO14091.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483] gi|229452292|gb|EEO58083.1| DNA polymerase III [Bacteroides sp. 2_2_4] gi|292632151|gb|EFF50755.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f] gi|298517065|gb|EFI40946.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23] Length = 374 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + Q F+ N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPE--QPLTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ +SVL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340 >gi|300812000|ref|ZP_07092456.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497026|gb|EFK32092.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 375 Score = 144 bits (362), Expect = 3e-32, Method: Compositional matrix adjust. Identities = 104/350 (29%), Positives = 180/350 (51%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL G + +F E + G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEIAGT-SFSLPPKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294 RL++G +P+ ++P + ++ ++L Q + R S+++ R AV+++L+ +D+ Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + N P++GK E + + I FN Y+ + +D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344 >gi|32490764|ref|NP_871018.1| hypothetical protein WGLp015 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165970|dbj|BAC24161.1| dnaN [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 369 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 103/345 (29%), Positives = 182/345 (52%), Gaps = 10/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK ++ R IL L + + +IP+ ++L+ + + I + E EIT I Sbjct: 1 MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60 Query: 60 SVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G+ TVS + DIV+ + I+FF +NE ++ I S F L + P F Sbjct: 61 ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNE---KLFILCKKSKFVLCTLPYKNF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E ++ + LK L+E T+F++A ++IR YLNG+ I + +++ +V+T+G Sbjct: 118 PNLNNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIR--SVSTNG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ +++ I I+ I+PR V +LRIL+ + V++ + E I +NIE ++ Sbjct: 176 HRLSKSKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILT 235 Query: 239 VRLIDGEFPNYQNVIPCS--NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++GEFP Y+ + + N L V+C L+ + RVS++S + + + L+L + L Sbjct: 236 TKLLEGEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVISD-KSKCINLNLKKNLLI 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + N + A E + Y M+I N Y+L+ ++ I S V Sbjct: 295 INIKNFNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESKRV 339 >gi|323141436|ref|ZP_08076326.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT 12067] gi|322414092|gb|EFY04921.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT 12067] Length = 369 Score = 143 bits (361), Expect = 4e-32, Method: Compositional matrix adjust. Identities = 106/369 (28%), Positives = 193/369 (52%), Gaps = 22/369 (5%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIV 78 R I K + P+ + + A D LEI+A + I+ I A + G I VSA D++ Sbjct: 19 RAIISKPSTPIFSGIHVIAADNKLEIQAMDLNMAISCTIDAEISESGEIVVSAKHFADLI 78 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 RKL A+ +NE + +S G S + L E ++P + + L ++K Sbjct: 79 RKLP--AESLTISKNEEKHSIKVSSGKSEYQLFLMNEDDYPKFPTFDADRTIALDDGMIK 136 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 L+++T F+ +T+E R GI + +D K+ V T+ HRLA+ + + S+ Sbjct: 137 ELIKKTIFSCSTDEARPLFTGIL--VEAKDGKITFVGTNTHRLAIKSLPYEGN--EELSM 192 Query: 199 IVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 I+P K +GEI R L+ + V +SL ++I + I+++ + RLI+G+FP+Y+ VIP Sbjct: 193 IIPSKVLGEISRNLTGEVPQQVLISLLNNQIMVVIDNIVIVSRLIEGQFPDYRRVIPPKF 252 Query: 258 DKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 +VN L AV+RV++ S+ +K+S+++D++ +T +PD+G +E ++ Sbjct: 253 ALTSKVNIKELAGAVERVALFSTDGDYSIIKMSVAADEITITSSSPDVGTGLEVVSCQTI 312 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 P+++ FN KY+L+I+ N+ + +E V +++S S V + D+ Sbjct: 313 GDPLNVAFNAKYILDILKNLEA-----EEAVLSMNTSLSPVCVTCADEPDYT-------- 359 Query: 377 FYVLMPMRI 385 Y++ P+R+ Sbjct: 360 -YIVTPVRV 367 >gi|237715176|ref|ZP_04545657.1| DNA polymerase subunit III [Bacteroides sp. D1] gi|262408871|ref|ZP_06085416.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22] gi|294647647|ref|ZP_06725214.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a] gi|294810714|ref|ZP_06769362.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC 1b] gi|298481745|ref|ZP_06999935.1| DNA polymerase III, beta subunit [Bacteroides sp. D22] gi|229445009|gb|EEO50800.1| DNA polymerase subunit III [Bacteroides sp. D1] gi|262353082|gb|EEZ02177.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22] gi|292637013|gb|EFF55464.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a] gi|294442047|gb|EFG10866.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC 1b] gi|295087705|emb|CBK69228.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens XB1A] gi|298271967|gb|EFI13538.1| DNA polymerase III, beta subunit [Bacteroides sp. D22] Length = 374 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPE--QPLTFDINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ +SVL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGAVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340 >gi|328946932|ref|YP_004364269.1| DNA polymerase III subunit beta [Treponema succinifaciens DSM 2489] gi|328447256|gb|AEB12972.1| DNA polymerase III, beta subunit [Treponema succinifaciens DSM 2489] Length = 374 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 192/390 (49%), Gaps = 24/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T ++ +++ + A II KN + ++L+ A + L IKA+ ++ +P Sbjct: 1 MRFTFDKDTMIKEISIAQEIISTKNMGSILSNILIIAQENKLTIKATDIKVNFETQVPVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS------HGDSNFYLQSFP 114 + G+ TV I+ L G +I F +E + E +I+ F ++S Sbjct: 61 ITEEGTTTVYCDKFMGILNSLPSG-EIEFNQEKKENEEQSINVIIKPVDKKIKFQMKSMS 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + +FP E V FE++S +K ++ +T FA++ +E RY++NG+FF ++L + V Sbjct: 120 QEKFPEFYSAENVPYFEVSSKDIKEMIAQTSFAVSEDETRYFMNGVFFEKKGDNLNM--V 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG RL+ I+A I++ PS IV K + IL+ + ++ ++ V++ + I + Sbjct: 178 ATDGRRLSFVSKSILAGISEFPSAIVHPKILNIILK-HAPEEGNIFVAVVDKMIFFKFGN 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 L++G+FPNY+ VIP +V +L A+ RV++M + + ++S Sbjct: 237 YKFGAALLEGQFPNYERVIPEHQAFNFQVYKADLVDALKRVALMVDKKAGRIFFNISDGV 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T DMG A E + Y I N++Y+ E + I+S +++ F Sbjct: 297 LKITSSQSDMGSADEEIPCQYQGDSYTIALNFRYIEEPLRGINS-----EKIAFEFTEEM 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +V +R + + + F+++MPM+ Sbjct: 352 KAVTMRPEPAE---------DYFHIIMPMQ 372 >gi|260173819|ref|ZP_05760231.1| DNA polymerase III, beta chain [Bacteroides sp. D2] gi|315922082|ref|ZP_07918322.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695957|gb|EFS32792.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 374 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + Q F+ N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPE--QPLTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ +SVL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS+DEV+ Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVI 340 >gi|29346774|ref|NP_810277.1| DNA polymerase III subnit beta [Bacteroides thetaiotaomicron VPI-5482] gi|253572230|ref|ZP_04849633.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6] gi|298386579|ref|ZP_06996135.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14] gi|29338671|gb|AAO76471.1| DNA polymerase III, beta chain [Bacteroides thetaiotaomicron VPI-5482] gi|251838005|gb|EES66093.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6] gi|298260956|gb|EFI03824.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14] Length = 374 Score = 143 bits (360), Expect = 5e-32, Method: Compositional matrix adjust. Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPE--QPLTFYVNTDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S E E+ + VL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAVLGENAVRVEMEAGVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y+ M I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQVCQYSGAAMSIGFKSTFLIDILNNISADEVV 340 >gi|182416732|ref|ZP_02948131.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521] gi|237669656|ref|ZP_04529634.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379389|gb|EDT76884.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521] gi|237654890|gb|EEP52452.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 368 Score = 142 bits (359), Expect = 6e-32, Method: Compositional matrix adjust. Identities = 107/388 (27%), Positives = 199/388 (51%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 M T E+ +ILE + + I K+T+P+ V ++ N D L + S ++ I + Sbjct: 1 MIFTCEKQEILEGISIVQKAITGKSTMPILEGVYIKTNELDSSLTLIGSDMDVSIQTTVN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A++ GSI + A + +I+RKL + EN++ + I+ S F + +EF Sbjct: 61 ANIIEPGSIVIDAKIFGEIIRKLPNSTIKIETIENQV---IRITCEKSVFDVVYMNTNEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + ++LKN+++ T FA+A +E R L GI F + ++L L VA DG Sbjct: 118 PELPEINEDLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA+ + + I +++P K + E+ +IL + V ++ + + I N+E + Sbjct: 176 YRLAIKSEFLDSDIE--IEVVIPGKTLNEVSKILEDVEDIVDITFTNNHILFNLEKTKII 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 RL++G+F NY +++P + + VN L+ +++R S+M+ +KL + D L + Sbjct: 234 SRLLEGKFINYNSLLPQEHKLSVHVNRQELQNSIERASLMAKDGNTNLIKLDIQQDNLII 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N +GK E +++ + I FN +YLL+++ N+ +DEVV ++ S S Sbjct: 294 S-SNSQLGKVREEISMKLQGDEIQIAFNSRYLLDVLKNME-----EDEVVLKMTSGISPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++N NA Y+++P+R+ Sbjct: 348 VIE---------ENNNENAKYLVLPVRL 366 >gi|168187276|ref|ZP_02621911.1| DNA polymerase III, beta subunit [Clostridium botulinum C str. Eklund] gi|169294798|gb|EDS76931.1| DNA polymerase III, beta subunit [Clostridium botulinum C str. Eklund] Length = 367 Score = 142 bits (359), Expect = 7e-32, Method: Compositional matrix adjust. Identities = 108/386 (27%), Positives = 188/386 (48%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + L A + + + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNEITLIGSDIDLSIETKIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+I V + + +I+RKL + + EN + I S F L EFPS Sbjct: 61 VEEEGTIVVDSKIFGEIIRKLPNSSVRINTTEN---NSIEIFCEKSKFDLIHMDADEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + VLKN+++ T FA+A +E R L GI F + +E L L VA DG+R Sbjct: 118 LPKINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDEKLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + S ++P K E+ +ILS + SV ++ + + I N+ + R Sbjct: 176 LALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKSVNITFTPNHILFNLGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP ++ + L ++R S+M VK + D L +T Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLVIT- 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E +N+ + I FN KYL++++ + D+E++ DSS S I Sbjct: 293 SNSQLGKVREELNIILQGGELQIAFNSKYLIDVLKILE-----DEEIIMEFDSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD+ + Y+++P+R+ Sbjct: 348 KSKDEKTYT---------YLVLPVRL 364 >gi|114565578|ref|YP_752732.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336513|gb|ABI67361.1| DNA polymerase III, beta subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 409 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 193/394 (48%), Gaps = 27/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK +E+ D+L + R KN IPV +LL+++ D L + A+ EI I + A Sbjct: 30 MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRAST-A 88 Query: 60 SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPES 116 ++V GS+ V+AH +D ++ L ++ F E N+ +++I +G S+ ++ ++ + Sbjct: 89 KIEVIEKGSVLVNAHYFFDFIKLL---PEVPIFIELNQETAQLDIKYGRSSGFINTYRDY 145 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P+ ++ F + VLK +++T FA AT R G+ F + E L VA+ Sbjct: 146 EYPALPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDLGEGG-NLNVVAS 204 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRLA I + S I+P + EILR+L + + LS + + + Sbjct: 205 DTHRLARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFL 264 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSD 293 + RLI+G++PNY+ VIP S +++++ L ++R ++ S ++IQ + + Sbjct: 265 LLSRLIEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEEN 324 Query: 294 KLCMTVDNPDMGKAIESMNV---YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + + MG+ E + + E ++I FN Y L+++ + + E++ L Sbjct: 325 EVEVNSYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGEA---KELLINL 381 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S V I KD N YVL+P+R Sbjct: 382 SSILGPVMIVNPQKD---------NYLYVLVPLR 406 >gi|323143413|ref|ZP_08078098.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066] gi|322416818|gb|EFY07467.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066] Length = 376 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 89/315 (28%), Positives = 173/315 (54%), Gaps = 5/315 (1%) Query: 29 VSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC--GSITVSAHLLYDIVRKLQDGAQ 86 ++ +VL+ + L K + IE++ IP DV G+ TV+A L D + L A Sbjct: 30 ITQNVLISIKNNELTFKCTVYSIEMSVVIPGVADVESEGATTVNAAKLRDSCKNLDQSAL 89 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF 146 ++F +E + +S G + F +++ EFP+ + E+ L + LK +++++ F Sbjct: 90 VTF-DYDESNEVLLVSSGTAQFQIRTRNVLEFPTFEHEDVEQRIVLKQNQLKAIIDKSIF 148 Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206 ++ E+ R YL G+ F ++ E++ + +DGHR+AV E + +A+ + R+ Sbjct: 149 CISNEDFREYLKGMRFEVDGENVSV--FTSDGHRMAVIETTLDVPLAQPLGSNLTRRCAA 206 Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 E+ +IL D V+++ +++ I + +++ +L+ +PN + VIP S D + V Sbjct: 207 ELTKILKDSDEPVELAFTKNSISTSCNGYTLTSKLLICGYPNVRAVIPKSIDVSVEVPRA 266 Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY 326 L+ A+ RV+++SS R+ AV L + D+L + +N + A ES+N+ YN P+D+ N Sbjct: 267 ELKNAISRVNVLSSKRVNAVNLVFADDRLNLKTENSEHEVATESLNISYNLHPIDMSLNA 326 Query: 327 KYLLEIIDNISSDEV 341 Y++E+++ IS++ V Sbjct: 327 GYVMEVLNAISTENV 341 >gi|320531086|ref|ZP_08032115.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399] gi|320136668|gb|EFW28621.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399] Length = 380 Score = 142 bits (358), Expect = 8e-32, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 18/349 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +SD+L L + + K P+ + L A DG LE++++ EI IPA Sbjct: 1 MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ + L + RKL D I E+ LG I+ G++ F L+ +FP Sbjct: 61 VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLGV---ITSGNARFTLRQMEVDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIR---YYLNGIFFHINEEDLKLCAVAT 176 + + F + VL +LV+++ FA EE R G + ++ L A T Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITLAA--T 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235 + HRLAV I + ++ +++P K + E+ R ++S+ + +++ S ++I ++ E + Sbjct: 176 NVHRLAVKSEHIESDAGQI-RVVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELR----VNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 M+ RLI+G FP+Y VIP D+ +R +N + AV+R S++S + VKL Sbjct: 235 YMTSRLIEGSFPDYHRVIP--RDENIRTKVTMNAADFAAAVERASLISRTDQYNIVKLEF 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + L +T ++PD+G+A E++ P I FN YLL+ + ++ SD Sbjct: 293 EDNLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSD 341 >gi|53714271|ref|YP_100263.1| DNA polymerase III subunit beta [Bacteroides fragilis YCH46] gi|60682327|ref|YP_212471.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC 9343] gi|253564787|ref|ZP_04842243.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5] gi|265766237|ref|ZP_06094278.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16] gi|52217136|dbj|BAD49729.1| DNA polymerase III beta chain [Bacteroides fragilis YCH46] gi|60493761|emb|CAH08551.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC 9343] gi|251946252|gb|EES86629.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5] gi|263253905|gb|EEZ25370.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16] gi|301163801|emb|CBW23356.1| putative DNA polymerase III beta chain [Bacteroides fragilis 638R] Length = 374 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 169/345 (48%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L Q DG L + S E + ++ + Sbjct: 1 MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + Q F E+ + + + + L EFP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPE--QPLTFDIKPDTYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + +L + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKLVRCKT-LAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340 >gi|255690065|ref|ZP_05413740.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565] gi|260624342|gb|EEX47213.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565] Length = 374 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 168/345 (48%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPE--QPLTFDVNPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + VL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGMVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N +L V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKLTVDRQQLMGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS+DEV+ Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVI 340 >gi|218130098|ref|ZP_03458902.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697] gi|317476591|ref|ZP_07935836.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|217987602|gb|EEC53930.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697] gi|316907187|gb|EFV28896.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 374 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 ESDTDGRFAVTAKTLLDALKEIPE--QPLTFDINTDSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + V + E + +E+ M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLENYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E+ Y PM I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISADEVV 340 >gi|313894749|ref|ZP_07828310.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976658|gb|EFR42112.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 380 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 18/349 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +SD+L L + + K P+ + L A DG LE++++ EI IPA Sbjct: 1 MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ + L + RKL D I E+ LG I+ G++ F L+ +FP Sbjct: 61 VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLGV---ITSGNARFTLRQMEVDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIR---YYLNGIFFHINEEDLKLCAVAT 176 + + F + VL +LV+++ FA EE R G + ++ L A T Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITLAA--T 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235 + HRLAV I + ++ +++P K + E+ R ++S+ + +++ S ++I ++ E + Sbjct: 176 NVHRLAVKSEHIESDAGQI-RVVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELR----VNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 M+ RLI+G FP+Y VIP D+ +R +N + AV+R S++S + VKL Sbjct: 235 YMTSRLIEGSFPDYHRVIP--RDENIRTKVTMNAGDFAAAVERASLISRTDQYNIVKLEF 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + L +T ++PD+G+A E++ P I FN YLL+ + ++ SD Sbjct: 293 EDNLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSD 341 >gi|120436260|ref|YP_861946.1| DNA polymerase III subunit beta [Gramella forsetii KT0803] gi|117578410|emb|CAL66879.1| DNA polymerase III subunit beta [Gramella forsetii KT0803] Length = 372 Score = 142 bits (357), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 100/344 (29%), Positives = 175/344 (50%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L N+ L + AS E ++ + Sbjct: 1 MKFIVSSNYLLKQLQILGGVINNSNTLPILDNFLFDLNNDELTVSASDLETTMSAKLKVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V A LL D ++ + ++F E+ E++ +HG + L EFP+ Sbjct: 61 SDSEGKIAVPAKLLLDTLKTFPE-QPLTFVVEDNNTIELSSNHG--KYALAYADGEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S + + +L + + +T FA +++R ++G+FF E+ L VATD H+ Sbjct: 118 PVELEDPSSTVVEADILASAISKTIFASGNDDLRPVMSGVFFQFTEDGLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + DI A A I+P+K + + IL+ +S V + ++S + + Sbjct: 176 LVKYSREDIKANQAA--EFIMPKKPLNLLKGILAGSESEVLIEYNDSNAKFTFDETQLIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L + +V RVSI S+ V+L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D KA E + Y M I FN ++L+E+++N+++DEV+ Sbjct: 294 EDVDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLNNLTADEVM 337 >gi|257456818|ref|ZP_05622002.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580] gi|257445824|gb|EEV20883.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580] Length = 367 Score = 141 bits (356), Expect = 1e-31, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 187/385 (48%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T + +L+ + A II K I + +VLL A +G L I+A+ ++ IP Sbjct: 1 MKFTFTKEVLLKEMAIAQEIISNKTAISILSNVLLIAKEGSLTIRATDIKVAFETKIPVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV I+ + G + K+ +L +IS + F L++ +++FP Sbjct: 61 VAEEGATTVFCDKFTSIIASMPSGEIEAEQKDQKLIIR-SISK-KAKFSLKTISDNDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V FE+ + K ++ +T FA++ +E RY++NG++ E +L A TDG R Sbjct: 119 FTDSSNVQFFEVPAKDFKEMITQTIFAVSDDETRYFMNGVYMEKKENNLIFAA--TDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + D + I+P K + I++ SS++ + + +SE I + + S Sbjct: 177 LAFIQHDFGIALPDFKGSIIPPKILS-IVQRRSSEEGMISIGISEKNIFFRFNAYNFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ VIP S C + QA+ RV+++ + + + L +S L +T + Sbjct: 236 LIDGQFPNYERVIPESQAHHFEAQCDDFLQALKRVALLVEQKSKRIFLKISDGTLSITSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G A E + Y + I NY YL E + + S+ + R++ ++ I Sbjct: 296 ENELGTANEEIPCKYEGEEITIALNYMYLEEPLKVLGSENI-------RIEFTDPMRAIT 348 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + F+++MPM++ Sbjct: 349 LR-------PETDTHFFHIIMPMQM 366 >gi|329961133|ref|ZP_08299388.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057] gi|328532071|gb|EGF58881.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057] Length = 374 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/345 (28%), Positives = 172/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G V+A L D ++++ + Q F+ N E+ + + + + L EFP Sbjct: 61 ESDMDGRFAVAAKTLLDALKEIPE--QPLTFEINTSSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + +L + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQILLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLMKNLLPKEQGNVTIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQLLTGALRRVSIFSSQASSLIKLRMQENLIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+DEV+ Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISADEVI 340 >gi|15834966|ref|NP_296725.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg] gi|270285140|ref|ZP_06194534.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg] gi|270289162|ref|ZP_06195464.1| DNA polymerase III subunit beta [Chlamydia muridarum Weiss] gi|301336535|ref|ZP_07224737.1| DNA polymerase III subunit beta [Chlamydia muridarum MopnTet14] gi|14194691|sp|Q9PKW4|DPO3B_CHLMU RecName: Full=DNA polymerase III subunit beta gi|7190388|gb|AAF39208.1| DNA polymerase III, beta subunit [Chlamydia muridarum Nigg] Length = 366 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 103/385 (26%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 1 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + E+ T I+ G S F L S + +FP Sbjct: 61 VYESGSVTIPSRRFFQLIRELTEANIEVAANSGEMAT---ITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I+ + + V TDG R Sbjct: 118 LPDMQNALRFTLDSEQLKDMFQRTSFAVSREESRYVLTGVLLSIS--NGTMTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R ++S+D + L +++I + + + + Sbjct: 176 LAKIDTNISLDPSFSGDYIIPIKAVEEIIR-MASEDVQSTIFLDQTKIAVECGNTLLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 235 LLSGEFPDFSPVISTQSSVQLNLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|295133681|ref|YP_003584357.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87] gi|294981696|gb|ADF52161.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87] Length = 372 Score = 141 bits (356), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 99/343 (28%), Positives = 173/343 (50%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L N+ L + AS E ++ + Sbjct: 1 MKFIVSSSYLLKQLQILGGVINNNNTLPILDNFLFDLNNDELTVSASDLETTMSAKLNVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V A LL D ++ + ++F E+ E++ +HG + L EFP+ Sbjct: 61 SDSEGKIAVPAKLLLDTLKTFPE-QPLTFVAEDNHTIELSSNHG--KYALAYADGEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +L + + +T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 PVSLEDPSNTVIEGDILSSAISKTIFASGNDDLRPVMSGVFFQFSTEGLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + D+ A ++ I+P+K + + IL+ +S V + +ES + ++ Sbjct: 176 LVKYSREDVTA--SQTAEFIMPKKPLNLLKGILAGSESEVLIEYNESNAKFTFDDTTLIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L + +V RVSI S+ V+L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L E+++N++SDEV Sbjct: 294 EDVDYSNKAEERLTCGYQGDDMQIGFNSRFLTEMLNNLNSDEV 336 >gi|213028016|ref|ZP_03342463.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 201 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 72/207 (34%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 R L +GA+I+ E G + + G S F L + P ++FP+ + + F L + +K Sbjct: 1 RGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMK 57 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV + + A + S+ Sbjct: 58 RLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLPSH-SV 114 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 IVPRK V E++R+L ++ ++V + + I ++ + +L+DG FP+Y+ V+P + D Sbjct: 115 IVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 174 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQA 285 K L C L+QA R +I+S+ + + Sbjct: 175 KHLEAGCDILKQAFARAAILSNEKFRG 201 >gi|319954740|ref|YP_004166007.1| DNA polymerase iii, beta subunit [Cellulophaga algicola DSM 14237] gi|319423400|gb|ADV50509.1| DNA polymerase III, beta subunit [Cellulophaga algicola DSM 14237] Length = 372 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 101/343 (29%), Positives = 172/343 (50%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNQLIVSASDLETTMSSVLNVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V A LL DI++ + ++F E+ E++ +HG + L +EFP Sbjct: 61 SDNEGLIAVPAKLLLDILKTFPE-QPLTFVVEDNNTVEISSNHG--KYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S + +L + +T FA +++R ++GIFF + E L VATD H+ Sbjct: 118 AVELANPSSTTIIGDILATAINKTIFAAGNDDLRPVMSGIFFQFSPESLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L DI A +++ I+P+K + + IL +S V + +ES + E+ + Sbjct: 176 LVKYQRTDISA--SQVAEFIMPKKPLNLLKGILGGSESDVTIEYNESNAKFSFENTELIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N L ++ L +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNVLSISRNQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L+E++ N++SD+V Sbjct: 294 EDIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLANLTSDDV 336 >gi|189460118|ref|ZP_03008903.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136] gi|189433160|gb|EDV02145.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136] Length = 374 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 174/345 (50%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN++P+ LL+ DG L + AS E ++ +I + Sbjct: 1 MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLLELQDGTLSMTASDNETTLSTSIEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G + VS+ L + ++++ + Q F+ N E+ + + + + L E+P Sbjct: 61 EFDGDGHLAVSSKTLLEALKEIPE--QPLSFQINPSNLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+E + + VL V R+ FA A +E+R +NGI+F I ED+ L VA+DG Sbjct: 119 QTQELGSNAVQVNIPADVLMGGVNRSIFATADDELRPVMNGIYFDITPEDITL--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + A + + I+P+K + +L + V++ + +E+ M Sbjct: 177 HKLVRCKT-FAAHSDEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNASFTLENYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + ++ A+ RVS+ SS +KLSLS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKATIDRAAFISALRRVSVFSSQASSLIKLSLSENQMKIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y M I F +L++I++N+S+ VV Sbjct: 296 AQDIDFSTSAEETIICQYEGNAMSIGFKSSFLIDILNNLSAQNVV 340 >gi|150025164|ref|YP_001295990.1| DNA polymerase III, beta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771705|emb|CAL43179.1| Probable DNA polymerase III, beta subunit [Flavobacterium psychrophilum JIP02/86] Length = 372 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 172/344 (50%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + L + AS E ++ ++ Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELKKNELLVSASDLETTMSASLTID 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS+ V A LL +I++ + +EN + IS + L P EFP Sbjct: 61 SDSQGSVAVPAKLLLEILKTFPEQPLTFTVEEN---NTIEISSQSGKYALAYAPGDEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + VL V +T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AVNLEEPSKTIVPAEVLSTAVSKTIFAAGNDDLRPVMSGVFFQFSPEGL--IFVATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L A D+ A +++ I+PRK + + IL++ + V + ++S + ++ ++ Sbjct: 176 LVKYARTDVKA--SQVADFIMPRKPLNILKGILATSNEEVTIEYNDSNATFSFDNYILTC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L + T +V RV+I S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLMIERTQFLSSVRRVAIFSNKTTHQIRLKIAGTELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D KA E + Y M I FN ++LLE++ N+ SD ++ Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLLEMLGNLQSDMIM 337 >gi|163781756|ref|ZP_02176756.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159882976|gb|EDP76480.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 363 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 108/391 (27%), Positives = 201/391 (51%), Gaps = 34/391 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R + E L A E+K+ +P+ + LL A L ++A+ E + ++ A Sbjct: 1 MKLQIDREEFEEALKKAREATEKKSALPILTNFLLTAEGDRLVVRATDLENYLVLSVKAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115 ++ GS+ VS+ L DIVR L + E E G ++ I+ G S F L + FPE Sbjct: 61 IEEGGSVCVSSRSLSDIVRNLNSAL---LYIETE-GEKLVITGGRSKFKLPTVSPEDFPE 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 FP E E S L +LK + +T +A+A EE R L G++ +E ++ V Sbjct: 117 --FPEVVEGEEAISGNL---ILKGIA-KTEYAIAKEEARISLQGMYMKGHEG--RVHFVG 168 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234 +DGHRL++ E + + +++PRK++ I R+L+ +D V S S + E Sbjct: 169 SDGHRLSLFE----PEGSFSYELLIPRKSLKVIQRLLTGIEDVRVAKSEDGSFAYFTSEE 224 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + VRL++GE+P+Y VIP E+ ++ ++A+ R+S ++ ++ VK++L+ + Sbjct: 225 WKLIVRLLEGEYPDYLAVIPHEFSAEVLLDVEETKRALKRLSGLAEGKVFPVKITLNDNL 284 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + +P+ G+ E ++V Y +I FN +Y+LE ++ + S ++ F+ + + Sbjct: 285 AVLEFMDPEFGEGREELDVDYVGETFEIGFNGRYILEALEALDS-----EKAWFKFTTPD 339 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + D +S + ++MPMR+ Sbjct: 340 TAALLESDDYESDPYR-------CIIMPMRV 363 >gi|15604794|ref|NP_219578.1| DNA polymerase III subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|166154296|ref|YP_001654414.1| DNA polymerase III subunit beta [Chlamydia trachomatis 434/Bu] gi|166155171|ref|YP_001653426.1| DNA polymerase III subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|14194661|sp|O84078|DPO3B_CHLTR RecName: Full=DNA polymerase III subunit beta gi|3328470|gb|AAC67666.1| DNA Pol III (beta chain) [Chlamydia trachomatis D/UW-3/CX] gi|165930284|emb|CAP03770.1| DNA polymerase III, beta chain [Chlamydia trachomatis 434/Bu] gi|165931159|emb|CAP06724.1| DNA polymerase III, beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 416 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + A I + G I+ G S F L S + +FP Sbjct: 111 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 167 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 225 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 399 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 400 -----------DSTRSLFVIMPMRL 413 >gi|255310878|ref|ZP_05353448.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276] gi|255317178|ref|ZP_05358424.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276s] gi|255348439|ref|ZP_05380446.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70] gi|255502981|ref|ZP_05381371.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70s] gi|255506651|ref|ZP_05382290.1| DNA polymerase III subunit beta [Chlamydia trachomatis D(s)2923] gi|301335548|ref|ZP_07223792.1| DNA polymerase III subunit beta [Chlamydia trachomatis L2tet1] gi|296434664|gb|ADH16842.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/150] gi|296436517|gb|ADH18687.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11222] gi|296438381|gb|ADH20534.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/11023] Length = 366 Score = 141 bits (355), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 1 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + A I + G I+ G S F L S + +FP Sbjct: 61 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|297748204|gb|ADI50750.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-EC] gi|297749084|gb|ADI51762.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-LC] Length = 428 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 63 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 122 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + A I + G I+ G S F L S + +FP Sbjct: 123 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 179 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 180 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 237 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 238 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 296 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 297 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 356 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 357 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGII-- 410 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 411 ----------TDSTRSLFVIMPMRL 425 >gi|76788788|ref|YP_327874.1| DNA polymerase III subunit beta [Chlamydia trachomatis A/HAR-13] gi|237804424|ref|YP_002888578.1| DNA polymerase III subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|76167318|gb|AAX50326.1| DNA polymerase III, beta chain [Chlamydia trachomatis A/HAR-13] gi|231272724|emb|CAX09628.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|289525120|emb|CBJ14591.1| DNA polymerase III, beta chain [Chlamydia trachomatis Sweden2] Length = 416 Score = 140 bits (354), Expect = 2e-31, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 189/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + E+ T I+ G S F L S + +FP Sbjct: 111 VYESGSVTIPSRRFFQLIRELTEANIEVAAHSGEMAT---ITSGSSCFRLLSMGKEDFPM 167 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 225 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 399 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 400 -----------DSTRSLFVIMPMRL 413 >gi|254796561|ref|YP_003081397.1| DNA polymerase III, beta subunit [Neorickettsia risticii str. Illinois] gi|254589798|gb|ACT69160.1| DNA polymerase III, beta subunit [Neorickettsia risticii str. Illinois] Length = 372 Score = 140 bits (354), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 110/388 (28%), Positives = 192/388 (49%), Gaps = 33/388 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 ITV++ + +LG+ + RK+TI HV ++ +E+ + E+ +T ++ Sbjct: 9 ITVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68 Query: 63 VC-GSITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V +I+V A LY+IV++L G +S K+N + I F L FP Sbjct: 69 VIDAAISVDAFRLYEIVKRLPTDVGVVLSIEKDNLVVRSKRI-----EFSLPYLDAKHFP 123 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 EEE + A +++L + FA + E R +LNG++F + E K+ ATD H Sbjct: 124 LISEEEKIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGE--KITVAATDVH 181 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237 RLAVA + + S I+P+K V E++++ SSK+ + + E SRI + S+ + Sbjct: 182 RLAVA--TLTKKTGLKFSCIIPKKTVSEMIKLSSSKEVELFLHGREYISRIKMVFGSVRL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI G FPN+ VIP S L + L +++RV ++S + +A+ + + +L + Sbjct: 240 NSKLIAGTFPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299 Query: 298 TVDNPD--MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 N D G+ + +N E + I FN+ YLL+I+ + + EV + +++ S Sbjct: 300 DASNSDASFGRELLELNEDTGE-EISIYFNHVYLLDILSALD-----NKEVTMKFNNATS 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V +G + +A YV+MPM Sbjct: 354 QVLFQGDE-----------SALYVVMPM 370 >gi|118445177|ref|YP_879297.1| DNA polymerase III subunit beta [Clostridium novyi NT] gi|118135633|gb|ABK62677.1| DNA polymerase III, beta subunit [Clostridium novyi NT] Length = 367 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 108/387 (27%), Positives = 188/387 (48%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + L A D L + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKDNELTLIGSDIDLSIETKIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+I V + + +I+RKL + + +I+ N + I S F L EFP Sbjct: 61 VEEEGTIVVDSKIFGEIIRKLPNSSVKINTTDNNS----IEIFCEKSKFDLIHMDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 F + VLKN+++ T FA+A +E R L GI F + +E L L VA DG+ Sbjct: 117 GLPRINENMIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDEKLNL--VALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ +I + S ++P K E+ +ILS + +V ++ + + I N+ + Sbjct: 175 RLALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKNVNITFTPNHILFNLGETKVIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF Y ++IP ++ + L ++R S+M VK + D L +T Sbjct: 233 RLLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLIIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +GK E +N+ + I FN KYL++++ + DDE++ DSS S Sbjct: 293 -SNSQLGKVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPCV 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K++ + Y+++P+R+ Sbjct: 347 IKSKEEKAYT---------YLVLPVRL 364 >gi|296435593|gb|ADH17767.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9768] gi|296437453|gb|ADH19614.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11074] gi|297139952|gb|ADH96710.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9301] Length = 366 Score = 140 bits (353), Expect = 3e-31, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 1 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFMATDLTVSTRCVVKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + A I + G I+ G S F L S + +FP Sbjct: 61 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|160891922|ref|ZP_02072925.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492] gi|270296412|ref|ZP_06202612.1| DNA polymerase III, beta subunit [Bacteroides sp. D20] gi|317480392|ref|ZP_07939492.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|156858400|gb|EDO51831.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492] gi|270273816|gb|EFA19678.1| DNA polymerase III, beta subunit [Bacteroides sp. D20] gi|316903470|gb|EFV25324.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 374 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSATVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G V+A L D ++++ + Q F+ N E+ + + + + L EFP Sbjct: 61 ESDMDGRFAVTAKTLLDALKEIPE--QPLTFEINTDSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLMKNLLPKEQGMVTIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLLGALRRVSIFSSQASSLIKLRMQENLIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+DE+V Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISADEIV 340 >gi|86143001|ref|ZP_01061423.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217] gi|85830446|gb|EAQ48905.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217] Length = 372 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + +L++ AS E + + Sbjct: 1 MKFIVSSSYLLKQLQVLGGVISNSNTLPILDNFLFELEENVLKVSASDLETTMIATLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I V A LL D ++ + ++F + E++ +HG + L EFP+ Sbjct: 61 SEDSGNIAVPARLLLDTLKTFPE-QPLTFVAGDNNTIEISSNHG--KYALAYASGEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + VL V T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AVELDDPSKVTIPAGVLATAVSNTIFATGNDDLRPVMSGVFFQFDTEGLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+ Q + I+P+K + + IL+S D + V ++S + +++ + Sbjct: 176 LVKYGRTDV--QANQTAEFIMPKKPLNLLKGILASSDDDINVEYNDSNAKFSFDNVQLLC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L ++ +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLIIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L+E+++N+++++V Sbjct: 294 EDVDYSNKAEERLTCDYQGDDMQIGFNSRFLVEMLNNLNANDV 336 >gi|110637953|ref|YP_678160.1| DNA polymerase III subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|110280634|gb|ABG58820.1| DNA polymerase III, beta subunit [Cytophaga hutchinsonii ATCC 33406] Length = 374 Score = 140 bits (353), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 97/367 (26%), Positives = 183/367 (49%), Gaps = 13/367 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I +P+ + L + DG+L + AS + + I Sbjct: 1 MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSI V A +L D ++ L + Q F + + IS + + L ++FP Sbjct: 61 AKAKGSIAVPAKILLDTLKNLPE--QPVTFTIDPETYSIEISSDNGRYKLSGENATDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + YS ++++ +L + T FA + +E++ + G++ + E + VATDGHR Sbjct: 119 VPGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATF--VATDGHR 176 Query: 181 L-AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L DIV+++A ++I+P+KA+ + L S++++VK+ + S + ++ M Sbjct: 177 LIRYRRTDIVSEMAN--TLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID FP+Y+N IP N L + T++ ++ R+SI ++ V+L L+ +L ++ Sbjct: 235 RLIDERFPDYENAIPVDNPNVLTITRTDMMNSLKRISIYANKTTHQVRLKLAGSELQISA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ D +A E + + M+I FN K+L+E++ N+ S ++ + N + Sbjct: 295 EDLDFSNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDS-----PQISMHFSAPNRAGI 349 Query: 359 IRGKDKD 365 I DKD Sbjct: 350 ITPADKD 356 >gi|153808234|ref|ZP_01960902.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185] gi|149129137|gb|EDM20353.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185] Length = 374 Score = 140 bits (352), Expect = 4e-31, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 169/345 (48%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + Q F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPE--QPLTFLINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + VL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + SV + E ++S M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGSVTIEFDERNAVFMLDSYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS+DEVV Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340 >gi|224023849|ref|ZP_03642215.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM 18228] gi|224017071|gb|EEF75083.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM 18228] Length = 374 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 173/345 (50%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN++P+ L++ DG L + AS E ++ +I S Sbjct: 1 MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLIELQDGTLSMTASDNETTLSTSIEVS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G VS+ L + ++++ + Q F+ N E+ + + + + L E+P Sbjct: 61 DYEEDGRFAVSSKTLLEALKEIPE--QPLSFQINSSNLEITVQYQNGKYSLMGQSADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E E + + +L + R+ FA A +E+R +NGI+F I ED+ L VA+DG Sbjct: 119 QASELNEGAVQVVMGADILTTGINRSLFATADDELRPVMNGIYFDITTEDITL--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V A + + I+P+K + +L + V++ + +E+ M Sbjct: 177 HKL-VRNKTYAAHGEEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNATFTLENYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + ++ + A+ RVS+ SS +KLSLS + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAIIDRASFISALRRVSVFSSQASSLIKLSLSENMMKIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A ES+ Y+ M I F +L++I++NI+S V+ Sbjct: 296 AQDIDFSTSAEESLICQYDGNAMSIGFKSSFLIDILNNIASQNVI 340 >gi|318042961|ref|ZP_07974917.1| DNA polymerase III subunit beta [Synechococcus sp. CB0101] Length = 376 Score = 140 bits (352), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 104/392 (26%), Positives = 199/392 (50%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKLVCSQAELNASLQLVSRAVAGRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV G+IT+ A L +IV ++ + IS E E G +V ++ ++ ++ P +F Sbjct: 61 ASVHTSGAITLPARLFGEIVARMPSDSPISLSCE-EGGEQVELTSASGSYQMRGMPAEDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + +L VL + T FA +++E + L G+ +N E L+ CA ATDG Sbjct: 120 PELPLAQAATPIKLDPDVLAKGLRATLFASSSDEAKQLLTGVHLGLNAEGLE-CA-ATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236 HRLAV ++ A+ + VP +++ E+ R+LSS+ VSL ++ Sbjct: 178 HRLAVLRLENNAEGEAELDVTVPARSLRELERLLSSRSGGDPVSLFCDRGQVVFQFADQV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDK 294 ++ R +DG +PNY+ +IP S + L+++ L A++RV++++ VK++ + + Sbjct: 238 LTSRSLDGTYPNYRQLIPESFARSLKLDRKGLLGALERVAVLADQHNNVVKITSDPVAGQ 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D D+G E++ + + I FN +Y+LE + +++ + V R ++ Sbjct: 298 LAISADAQDVGSGSEAIAADVSGDAIQIAFNVRYVLEGLKAMAA-----ERVELRCNAPT 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 + V + +D +AF Y++MP++I Sbjct: 353 TPVVLAPQDD----------SAFTYLVMPVQI 374 >gi|86130089|ref|ZP_01048689.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134] gi|85818764|gb|EAQ39923.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134] Length = 372 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 99/344 (28%), Positives = 173/344 (50%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L + AS E +T + Sbjct: 1 MKFIVSSSYLLKQLQVLGGVINNSNTLPILDNFLFELDGNALTVSASDLETTMTSKLDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT-EVNISHGDSNFYLQSFPESEFP 119 G+I + A LL D ++ + Q F ++E T E++ +HG + L +EFP Sbjct: 61 SSDNGAIALPARLLLDTLKTFPE--QPLTFTQHENNTIEISSNHG--KYALAYADGAEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E ++ SVL + T FA +++R ++G+FF + L VATD H Sbjct: 117 NAVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFATDGLTF--VATDAH 174 Query: 180 RLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +L D+VA A I+P+K + + ILS+ D + V +ES +++ + Sbjct: 175 KLVKYGRTDVVASQAA--EFIMPKKPLNLLKGILSTSDDEISVEYNESNAKFTFDNVELV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY+ VIP N L ++ +V RVSI S+ ++L ++ +L ++ Sbjct: 233 CRLIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNIS 292 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L E+++N+++++V Sbjct: 293 AEDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNANDV 336 >gi|332293550|ref|YP_004432159.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171636|gb|AEE20891.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 372 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 172/343 (50%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + + L + AS E +T + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELDGNTLTVSASDLETTMTSKLDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I + A LL D ++ + ++F + E++ +HG + L +EFP+ Sbjct: 61 SSDNGAIALPARLLLDTLKTFPE-QPLTFTQHENNTVEISSNHG--KYALAYADGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ SVL + T FA +++R ++G+FF + L VATD H+ Sbjct: 118 AVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFGTDGLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+VA A I+P+K + + ILS+ D + V +ES + +++ + Sbjct: 176 LVKYGRTDVVASQAA--EFIMPKKPLNLLKGILSTSDDEIAVEYNESNAKFSFDNVELVC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N L ++ +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L E+++N+++++V Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNANDV 336 >gi|332521540|ref|ZP_08397994.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4] gi|332042939|gb|EGI79138.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4] Length = 372 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L ++ L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDIDNNALTVSASDLETTMSSTLDIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS+ + A LL D ++ + ++F E E++ +HG + L +EFP Sbjct: 61 SDSKGSVAIPARLLLDTLKTFPE-QPLTFTVEENNTVEISSNHG--KYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ +L + +T FA +++R ++G+FF + ++L VATD H+ Sbjct: 118 AVSLEDPSATTISGDILATAISKTIFAAGNDDLRPVMSGVFFQFSTDNLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+ A +++ I+P+K + + ILSS D V + ++S E+ + Sbjct: 176 LVKYTREDVSA--SQVAEFIMPKKPLTLLKGILSSSDQDVTIEYNDSNAKFTFENTILIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L ++ T +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLSIDRTQFLNSVKRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L E+++N+++ +V Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLNATDV 336 >gi|299820841|ref|ZP_07052730.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM 20601] gi|299817862|gb|EFI85097.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM 20601] Length = 381 Score = 139 bits (351), Expect = 5e-31, Method: Compositional matrix adjust. Identities = 100/358 (27%), Positives = 182/358 (50%), Gaps = 26/358 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFIIKRDRLVQAVNEVSRAISSRTTIPILTGIKITVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN-EL----GTEVNISHGDSN 107 V+ G I + A DIVR+L D EN EL + NI G ++ Sbjct: 61 DNDEVIVEVESFGGIVLQARYFGDIVRRLPD--------ENVELEVVSSYQTNIRSGQAS 112 Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F L E+P E L +VLKN++ +T FA++ E+R L G+ + I E Sbjct: 113 FTLNGLDPLEYPKLPEVTDGKKIILPINVLKNIIRQTVFAVSAIEVRPVLTGVNWLIKEN 172 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 L AVATD HRLA+ E+ + + + ++++P K++ E+ +IL S+++ ++ ++ Sbjct: 173 --LLTAVATDSHRLALREIPLETSLEEDYNVVIPGKSLSELNKILDDASESIEMVIANNQ 230 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAV 286 I ++ L RL++G +P+ +IP EL +N + QA+DR S+++ R + Sbjct: 231 ILFKLKDLLFYSRLLEGSYPDTSRLIPTDIKSELVINSKSFLQAIDRASLLARENRNNVI 290 Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 KLS L S ++ ++ ++P++G E + + ++ + I FN KY+++ + D++V Sbjct: 291 KLSTLESGQVEVSSNSPEIGNVSERVFSQQFSGEELKISFNGKYMMDALRAFEGDDIV 348 >gi|237802508|ref|YP_002887702.1| DNA polymerase III subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|231273742|emb|CAX10522.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/Jali20/OT] Length = 416 Score = 139 bits (351), Expect = 6e-31, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + A I + G I+ G S F L S + +FP Sbjct: 111 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMAIITSGSSCFRLLSMGKEDFPM 167 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 225 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + S DE+V + DS N + Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 399 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 400 -----------DSTRSLFVIMPMRL 413 >gi|148378013|ref|YP_001252554.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC 3502] gi|153931816|ref|YP_001382412.1| DNA polymerase III subunit beta [Clostridium botulinum A str. ATCC 19397] gi|153937046|ref|YP_001385964.1| DNA polymerase III subunit beta [Clostridium botulinum A str. Hall] gi|148287497|emb|CAL81556.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC 3502] gi|152927860|gb|ABS33360.1| DNA polymerase III, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|152932960|gb|ABS38459.1| DNA polymerase III, beta subunit [Clostridium botulinum A str. Hall] Length = 367 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A L +I+RKL D +I+ ++N + I +S F L EFP Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPGEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + F + S LKN+++ T FA A +E R L G+ F I ++ L L VA DG+ Sbjct: 117 NPPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++V + ++I P K + E+ +IL + +V ++ + + I +I + Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF +Y+++IP + ++ + L +++R S+M+ VK S DK+ +T Sbjct: 233 RLLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E + V + I FN KYLL+++ + D+EVV SS S Sbjct: 293 -SNSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + + N Y+++P+R+ Sbjct: 347 IKNTEIN---------NCTYLVLPVRL 364 >gi|325288100|ref|YP_004263890.1| DNA polymerase III subunit beta [Cellulophaga lytica DSM 7489] gi|324323554|gb|ADY31019.1| DNA polymerase III, beta subunit [Cellulophaga lytica DSM 7489] Length = 373 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 174/343 (50%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELKQNSLTVSASDLETTMSSVLEVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I + A LL + ++ + ++F E E++ +HG + L +EFP+ Sbjct: 61 SDNEGTIALPAKLLLETLKTFPE-QPLTFVVEENNTVEISSNHG--KYALAYVDGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +L + +T FA +++R ++G+FF + E+L VATD H+ Sbjct: 118 AVELSNPSTTTILGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+ A +++ I+P+K + + IL ++ V + +ES ++ + Sbjct: 176 LVKYQRTDVTA--SQVAEFIMPKKPLTLLKGILGGSENDVTIEYNESNAKFTFDNTELIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N L ++ T L +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNVLSISRTQLLSSVRRVSIFSNKTTHQIRLKVAGAELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y M I FN ++L+E++ N+SSD+V Sbjct: 294 EDIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLGNLSSDDV 336 >gi|260062622|ref|YP_003195702.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501] gi|88784189|gb|EAR15359.1| DNA polymerase III, beta chain [Robiginitalea biformata HTCC2501] Length = 372 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 96/343 (27%), Positives = 172/343 (50%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L N L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVISNSNTLPILDNFLFDLNGTKLTVSASDLETTMSSELEVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I V A LL D ++ + ++F E+ E++ SHG + L +EFP Sbjct: 61 SGDKGTIAVPARLLLDTLKTFPE-QPLTFVVEDNNTVEISSSHG--KYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E+ +L +++T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AVELPDPSKTEIMGDILATAIDKTLFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+ Q +++ I+P+K + + IL+ + V V+ ++S + + Sbjct: 176 LVKYRRTDV--QASEVAEFIMPKKPLNLLKGILAGSEDPVTVAYNDSNAKFLFANTVLVC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L + + L +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLVIQRSQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D KA E + Y + I FN ++L+E++ N+ SDE+ Sbjct: 294 EDVDYSNKAEERLTCSYQGDDLQIGFNSRFLVEMLGNLGSDEI 336 >gi|167036433|ref|YP_001664011.1| DNA polymerase III subunit beta [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038677|ref|YP_001661662.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X514] gi|256751454|ref|ZP_05492332.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300913763|ref|ZP_07131080.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561] gi|307723220|ref|YP_003902971.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X513] gi|320114859|ref|YP_004185018.1| DNA polymerase III subunit beta [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852917|gb|ABY91326.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X514] gi|166855267|gb|ABY93675.1| DNA polymerase III, beta subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749673|gb|EEU62699.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300890448|gb|EFK85593.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561] gi|307580281|gb|ADN53680.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X513] gi|319927950|gb|ADV78635.1| DNA polymerase III, beta subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 370 Score = 139 bits (350), Expect = 7e-31, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 178/346 (51%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A G ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G I V A + ++VRKL +G +I E++ VN+ NF + EFP Sbjct: 61 IEEEGEIVVPAKIFSELVRKLPEGDVKI----ESDSQNTVNVVCDSINFTIAGSDAVEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L ++LK+L+ +T F +A E+ R L G+ F + + ++K AVA DG Sbjct: 117 EIPLVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVK--AVALDGF 174 Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 R+A+ +E + + SI++P K + EI RIL +++ +++ + +++ IE+ Sbjct: 175 RMAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G F NY V+P E+ V L ++++R S+++ + +K + DK Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + GK IE + V ++I FN +YLL+ + I +E+ Sbjct: 294 ITVSSNSEKGKMIEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEI 339 >gi|153939951|ref|YP_001389371.1| DNA polymerase III subunit beta [Clostridium botulinum F str. Langeland] gi|168181117|ref|ZP_02615781.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916] gi|170757193|ref|YP_001779628.1| DNA polymerase III subunit beta [Clostridium botulinum B1 str. Okra] gi|226947224|ref|YP_002802315.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str. Kyoto] gi|152935847|gb|ABS41345.1| DNA polymerase III, beta subunit [Clostridium botulinum F str. Langeland] gi|169122405|gb|ACA46241.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str. Okra] gi|182668123|gb|EDT80102.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916] gi|226843050|gb|ACO85716.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str. Kyoto] gi|295317478|gb|ADF97855.1| DNA polymerase III, beta subunit [Clostridium botulinum F str. 230613] gi|322804280|emb|CBZ01830.1| DNA polymerase III beta subunit [Clostridium botulinum H04402 065] Length = 367 Score = 139 bits (350), Expect = 8e-31, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A L +I+RKL D +I+ ++N + I +S F L EFP Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + F + S LKN+++ T FA A +E R L G+ F I ++ L L VA DG+ Sbjct: 117 NPPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++V + ++I P K + E+ +IL + +V ++ + + I +I + Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF +Y+++IP + ++ + L +++R S+M+ VK S DK+ +T Sbjct: 233 RLLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E + V + I FN KYLL+++ + D+EVV SS S Sbjct: 293 -SNSQLGMVREELKVVLQGDDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + + N Y+++P+R+ Sbjct: 347 IKNTEIN---------NCTYLVLPVRL 364 >gi|187777366|ref|ZP_02993839.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC 15579] gi|187774294|gb|EDU38096.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC 15579] Length = 367 Score = 139 bits (349), Expect = 9e-31, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A L +I+RKL D +I+ ++N + I +S F L EFP Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + F + S LKN+++ T FA A +E R L G+ F I ++ L L VA DG+ Sbjct: 117 NPPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++V + ++I P K + E+ +IL + +V ++ + + I +I + Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF +Y+++IP + ++ + L +++R S+M+ VK S DK+ +T Sbjct: 233 RLLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E + V + I FN KYLL+++ + D+EVV SS S Sbjct: 293 -SNSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + + N Y+++P+R+ Sbjct: 347 IKNTEIN---------NCTYLVLPVRL 364 >gi|330835985|ref|YP_004410626.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374] gi|329747888|gb|AEC01244.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374] Length = 371 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 172/331 (51%), Gaps = 7/331 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ I + + A ++N++ + +VLL+ + LL IKA+ ++ IP Sbjct: 1 MKFVCQKATIFKEISLALDFTSQRNSLSIVSNVLLETKENLLVIKATDQKVGFHSQIPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE-LGTEVNISHGDSNFYLQSFPESEFP 119 GS TV I+R L + I F ++NE L E D F L++ +FP Sbjct: 61 TLEEGSTTVFCDKFLGILRSLPE-TDILFEEKNEKLYIEPVAQKMD--FQLRTIGSDKFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +E V F ++ ++V +T FA++ +E RYY++G++ N L + VATDG Sbjct: 118 DLEEHSNVPFFTISQKDFLDMVNQTIFAISEDETRYYMSGVYLEYNTSSLIM--VATDGR 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ E I I + PS+I+P K + ++R +++ + + ++ ++E+ I + + Sbjct: 176 RLSYIERKIEETIPRFPSVIIPAKFL-TLIRKMATGEGTFRLGVTENTIFASFGGQFIYS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G+FPNY+ VIP S + + ++ +AV RVS+ + + + L + + + ++ Sbjct: 235 ALINGKFPNYRRVIPESQSTSVITSVADILEAVKRVSLFVETKAKKIFLDIDQNGITVSS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLL 330 + D+G A E++ Y+ P I NY Y++ Sbjct: 295 EENDLGIARETITADYSGEPCRISLNYGYIM 325 >gi|307320162|ref|ZP_07599582.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] gi|306894208|gb|EFN24974.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] Length = 372 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 103/373 (27%), Positives = 183/373 (49%), Gaps = 28/373 (7%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV--DVCGSITVSAHLLYDIV 78 + KNTIP ++ ++ + + ++A+ +IEI A + D G T A + IV Sbjct: 20 VNSKNTIPHLANIAVERHAEGIRLRATNLDIEIAAPFQAEIGADFSG-FTFPAKTVTSIV 78 Query: 79 RKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135 + DG ISF + LG + V I G S + P ++FP + E ++ L SS Sbjct: 79 GAVDDGKDISF-EAVMLGNKLEAVTIRSGRSRIKVPILPLADFPILDQGELPFAVSLGSS 137 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA---VAEVDIVAQI 192 + +A +TEE R+YLNG+F +E L VATDGHR+A + D+ I Sbjct: 138 SFIRCLSAVDYACSTEETRHYLNGVFLDASEAGLMF--VATDGHRMARRLLPSSDVDDPI 195 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 MP +I+PR+ +++ L KD ++ +SLSE RI ++ + +L++G +P+Y+ + Sbjct: 196 ESMPKVILPRETAPLLVKHLP-KDETLSISLSEFRIRFAAGNIVIISKLVEGTYPDYRRL 254 Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312 P S+ R++ L+ A+ RV +++ + AV+ + +T D G+A E + Sbjct: 255 SPGSHKIRARISGAELKAAIARVLTVNTEKGNAVRFTFDKTSATLTSRPGDAGEA-EDVV 313 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 ++ + N YL E ID++ ++E+ D + S + +R K Sbjct: 314 TAASDGEFVVGMNGAYLRETIDHLDTEEIELD-----FNDPASPILLR---------KPG 359 Query: 373 KVNAFYVLMPMRI 385 + + ++MPMR+ Sbjct: 360 ETDTHTIIMPMRV 372 >gi|18308984|ref|NP_560918.1| DNA polymerase III subunit beta [Clostridium perfringens str. 13] gi|110798947|ref|YP_694477.1| DNA polymerase III subunit beta [Clostridium perfringens ATCC 13124] gi|110803106|ref|YP_697353.1| DNA polymerase III subunit beta [Clostridium perfringens SM101] gi|168207735|ref|ZP_02633740.1| DNA polymerase III, beta subunit [Clostridium perfringens E str. JGS1987] gi|168212005|ref|ZP_02637630.1| DNA polymerase III, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|168215268|ref|ZP_02640893.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str. F4969] gi|168218305|ref|ZP_02643930.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC 8239] gi|169343474|ref|ZP_02864474.1| DNA polymerase III, beta subunit [Clostridium perfringens C str. JGS1495] gi|182627053|ref|ZP_02954778.1| DNA polymerase III, beta subunit [Clostridium perfringens D str. JGS1721] gi|18143659|dbj|BAB79708.1| DNA-directed DNA polymerase III beta chain [Clostridium perfringens str. 13] gi|110673594|gb|ABG82581.1| DNA polymerase III, beta subunit [Clostridium perfringens ATCC 13124] gi|110683607|gb|ABG86977.1| DNA polymerase III, beta subunit [Clostridium perfringens SM101] gi|169298426|gb|EDS80515.1| DNA polymerase III, beta subunit [Clostridium perfringens C str. JGS1495] gi|170660920|gb|EDT13603.1| DNA polymerase III, beta subunit [Clostridium perfringens E str. JGS1987] gi|170710065|gb|EDT22247.1| DNA polymerase III, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|170713330|gb|EDT25512.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str. F4969] gi|177907579|gb|EDT70218.1| DNA polymerase III, beta subunit [Clostridium perfringens D str. JGS1721] gi|182379690|gb|EDT77169.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC 8239] Length = 366 Score = 139 bits (349), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 105/387 (27%), Positives = 191/387 (49%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T +++ + E + A + I K+T+P+ + ++A++ ++ I S ++ I A Sbjct: 1 MIFTCDKNKLQESIAIAQKAITGKSTMPILEGLYIEASENIVTIIGSDKDVSIETKFEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + V A + +I+RKL D +I E + I+ S F L +FP Sbjct: 61 VTEPGKLVVDAKIFGEIIRKLPNDKIKIETVSEEA----IRITCQKSVFDLLHMNAEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + F + +LKN+++ T FA+A +E R L GI F I +D KL VA DG+ Sbjct: 117 SLPKINENMIFSINQGILKNMIKGTSFAIAQDETRPILQGILFEI--KDSKLNLVALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ +I + ++P K + E+ +IL + V ++ + + I N+ + Sbjct: 175 RLAIRTENI--DTNNTINAVIPGKTLNEVAKILEDSEEIVNITFTPNHILFNMGDTKVIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF Y ++P + ++ V+ L+ ++R S+M+ VK ++ + + +T Sbjct: 233 RLLEGEFIKYDALLPKEHKLQIEVDKQTLQNGIERASLMAKEGNSNLVKFDITDENIVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +GK E + + + I FN KYLL+++ N+ +D++ R+ SS S Sbjct: 293 -SNSQLGKVREEVTIKLQGDEIQIAFNSKYLLDVLKNME-----EDKIELRMTSSISPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR K+ D Y+++P+RI Sbjct: 347 IRNKNNDL---------CEYLVLPVRI 364 >gi|225848547|ref|YP_002728710.1| DNA polymerase III subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225643105|gb|ACN98155.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 362 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 109/366 (29%), Positives = 185/366 (50%), Gaps = 21/366 (5%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 I E+K +PV + LL+A +G L I+ + E+ T I A V GS+ V+A L DI + Sbjct: 18 IAEKKAALPVLTNFLLKAENGKLIIQGTDLEVFTTYWINADVKEEGSVCVNAKKLTDISK 77 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L + +N L I G + + L + +FP +E + ++ L Sbjct: 78 VLPAASVSLTLDKNNL----KIVSGKTKYSLPTTDPEDFPVFEEFPADLAVRVSGDTLLK 133 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 + +T +A + +E R+ LNG+ F E+ L VATDGHRLA+ + ++ + I Sbjct: 134 GITKTVYAASKDESRFALNGVCFSFVEKYLDF--VATDGHRLALYKGEVSGGSIEG-KYI 190 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 VP+KA+ EI +++S D V+V++S S I +S RL++G FP+Y VIP S + Sbjct: 191 VPQKALSEIKKLVSEYDD-VEVAISGSSIFFKGSDWMLSARLLEGVFPDYTQVIPKSFNI 249 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 E+ V ++ +V RV + + +KL+L +KL ++ + A + +++ YN+ Sbjct: 250 EVEVLKGDILDSVKRVVVAEESDAKPIKLTLKENKLIISTPTVEDAYAEDEIDIEYNQEE 309 Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 +I FN KY+++ I DE+ D ++V + + +S I KD+ V Sbjct: 310 FEIGFNGKYIIDAI-----DEIEDSKIVLKFINKDSQTVIVPKDESEP--------YLAV 356 Query: 380 LMPMRI 385 +MPM I Sbjct: 357 VMPMNI 362 >gi|189467073|ref|ZP_03015858.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM 17393] gi|189435337|gb|EDV04322.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM 17393] Length = 355 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/326 (28%), Positives = 166/326 (50%), Gaps = 8/326 (2%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIV 78 +I KN +P+ L + DG L + S E + ++ + D G V+A + D + Sbjct: 1 MINSKNALPILDCFLFELKDGTLSVTVSDSETTMVTSVEVNESDADGRFAVAAKTILDAL 60 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP-STKEEEYVYSFELASSVL 137 +++ + Q F+ N E+ + + + + L EFP S + E+ +SVL Sbjct: 61 KEIPE--QPLSFEVNTDSLEITVQYQNGKYSLMGQNADEFPQSAMLGDNAVRVEMEASVL 118 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 + R FA A +E+R +NGI+F I ED+ + VA+DGH+L + + A+ + + Sbjct: 119 LGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDGHKLVRCKT-LAAKGNERAA 175 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 I+P+K I +L + V + E +E M RLI+G +PNY +VIP +N Sbjct: 176 FILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMVCRLIEGRYPNYNSVIPQNN 235 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYN 316 ++ V+ L A+ RVSI SS +KL + +++ ++ + D A E++ Y+ Sbjct: 236 PYKVTVDRIQLVGALRRVSIFSSQASSLIKLRMQPNQIVISAQDIDFSTSAEETLACQYD 295 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVV 342 PM I F +L++I++NI++DEV+ Sbjct: 296 GNPMSIGFKSTFLIDILNNIAADEVI 321 >gi|305666627|ref|YP_003862914.1| DNA polymerase III subunit beta [Maribacter sp. HTCC2170] gi|88708898|gb|EAR01133.1| DNA polymerase III, beta chain [Maribacter sp. HTCC2170] Length = 372 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 95/344 (27%), Positives = 173/344 (50%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNKLTVSASDLETTMSSVLDVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I V A LL + ++ + ++F E+ E++ +HG + L +EFP Sbjct: 61 SDNEGTIAVPAKLLLETLKTFPE-QPLTFVVEDNNTVEISSNHG--KYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S + +L + +T FA +++R ++G+FF + E+L VATD H+ Sbjct: 118 AVELANPSSTNIMGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + D+ A +++ I+P+K + + IL+ +S V + ++S ++ + Sbjct: 176 LVKYQRSDVTA--SQVAEFIMPKKPLNLLKGILAGSESEVAIEYNDSNAKFTFDNAELIC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L + +V RVSI S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLSIARNQFLSSVRRVSIFSNKTTHQIRLKIAGAELNISA 293 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D KA E + Y M I FN ++L E+++N++SDEV Sbjct: 294 EDIDYSNKAEERLTCSYQGDDMQIGFNSRFLTEMLNNLNSDEVA 337 >gi|254520695|ref|ZP_05132751.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA] gi|226914444|gb|EEH99645.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA] Length = 366 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 105/383 (27%), Positives = 194/383 (50%), Gaps = 27/383 (7%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E+ + E + A + I K T+P+ + + A + L + S ++ I + A + G Sbjct: 6 EKQKLQEGISIANKAITGKTTMPILEGIYINAKNEGLTLIGSDMDVSIETKVDADILEEG 65 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125 I + A + +I+RKL + EN++ + I+ S F L ++P+ Sbjct: 66 MIVIDARIFGEIIRKLPNSDIKIETLENDI---IQITCEKSVFNLVYMNGEDYPALPSIN 122 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 S E++ ++LKN+++ T FA+A +E R L GI F + ++L L VA DG+RLAV Sbjct: 123 ENLSVEVSQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDGYRLAVRS 180 Query: 186 --VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 +D +I +++P K + E+ +IL VK++ + + I N+ + + RL+D Sbjct: 181 EFLDNDNEI----EVVIPGKTLNEVSKILEDVSDIVKITFTNNHILFNLNNTKVISRLLD 236 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNP 302 G+F NY +++P + + VN L+ ++R S+M+ +KL + + + +T N Sbjct: 237 GKFVNYSSLLPQEHKILVDVNKQQLQSCIERASLMAKDSNSNLIKLEVQEENMIIT-SNS 295 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 +GK E + + P+ I FN +YLL+++ N+ DDEV + SS S I+ K Sbjct: 296 QLGKVREELTINLQGEPIQIAFNSRYLLDVLKNVD-----DDEVKLEMTSSVSPCVIKCK 350 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 + D N+ Y+++P+R+ Sbjct: 351 NTD---------NSKYLVLPVRL 364 >gi|170761565|ref|YP_001785337.1| DNA polymerase III subunit beta [Clostridium botulinum A3 str. Loch Maree] gi|169408554|gb|ACA56965.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 367 Score = 138 bits (348), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A L +I+RKL D +I+ ++N + I +S F L EFP Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + F + + LKN+++ T FA A +E R L G+ F I ++ L L VA DG+ Sbjct: 117 NPPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++V + ++I P K + E+ +IL + +V ++ + + I +I + Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF +Y+++IP + ++ L +++R S+M+ VK S+DK+ +T Sbjct: 233 RLLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E + V + I FN KYLL+++ + DDEVV SS S Sbjct: 293 -SNSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + + N Y+++P+R+ Sbjct: 347 IKNTELN---------NCTYLVLPVRL 364 >gi|237727133|ref|ZP_04557614.1| DNA polymerase subunit III [Bacteroides sp. D4] gi|265750417|ref|ZP_06086480.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA] gi|229433989|gb|EEO44066.1| DNA polymerase subunit III [Bacteroides dorei 5_1_36/D4] gi|263237313|gb|EEZ22763.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 374 Score = 138 bits (347), Expect = 1e-30, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN++P+ L++ DG L + AS E ++ ++ + Sbjct: 1 MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ + + ++++ + Q F N E+ + + + + L E+P Sbjct: 61 ESDGDGRFAVSSKTILEALKEIPE--QPLTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + V+ + R+ FA A +E+R +NGI+F I ED+ VA+DG Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V VA + + I+P+K + +L + V++ + +E+ SM Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RVS+ SS +KL LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+ E++ Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQEIL 340 >gi|319901724|ref|YP_004161452.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108] gi|319416755|gb|ADV43866.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108] Length = 374 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 100/345 (28%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLTVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G V A L D ++++ + Q F+ N E+ + + + + L EFP Sbjct: 61 ESDMDGRFAVIAKTLLDALKEIPE--QPLTFEINTDSLEITVQYQNGKYSLVGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLMKNLLPKEQGNVVIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENLIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+DEV+ Sbjct: 296 AQDIDFSTSAEENLVCQYAGNPMSIGFKSTFLIDILNNISADEVI 340 >gi|188584644|ref|YP_001916189.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349331|gb|ACB83601.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 370 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 106/387 (27%), Positives = 189/387 (48%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MKI ++ ++ E L R I KNTIP +Q + D L I E+ I + Sbjct: 1 MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLST 60 Query: 60 SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + GS+ V +DI++KL +D S +EN L + I G + ++ E+ Sbjct: 61 EILEQGSVVVPTKF-FDIIKKLPEDQITFSVDQENYL---ITIESGQVYYEIKGLDPEEY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E E SF + +LK ++ +T FA++ EE + G+ + D KL VATD Sbjct: 117 PKLPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKFDS-DNKLDMVATDS 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA + I I+P+KA+G++ RI+S +D + + L+ E + + Sbjct: 176 YRLAWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLF 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCM 297 +LID EFPN VIP + ++ ++ L+ +++R S+++S VKL++S + + + Sbjct: 236 SKLIDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T ++P GK E + +Y + I N ++++E++ I +D+V S S + Sbjct: 296 TSNSPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIE-----EDQVELEFTGSYSPM 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR ++ D F++++P+R Sbjct: 351 IIRPREND---------QYFHLILPVR 368 >gi|255527585|ref|ZP_05394449.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] gi|296186783|ref|ZP_06855184.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] gi|255508718|gb|EET85094.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] gi|296048497|gb|EFG87930.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] Length = 367 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 107/387 (27%), Positives = 186/387 (48%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E+S + E + + I K+T+P+ + ++ ++ L + S ++ I I + Sbjct: 1 MKFTCEKSILQEGISTVQKAITGKSTLPILNGIHIKTHENELILTGSDIDLSIESKIKSD 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSI + A + +I+RKL D IS N + I S F L +FP Sbjct: 61 IIEEGSIVIDAKIFGEIIRKLDNDTIHISTIDNNS----IEIVCKKSRFTLIHMNSEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 F + S+LKN++ T FA A +E R L GI F I +D KL VA DG+ Sbjct: 117 ELPNINENMIFSIPQSILKNMIRGTIFATAQDETRPILTGILFEI--KDKKLNLVALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S ++P K + E+ +IL D SV ++ + + I ++ + Sbjct: 175 RLALKSETL--DTDNIISAVIPGKTLSEVSKILEENDESVNITFTPNHILFSVGETKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF Y ++IP + ++ L +++R S+M +K + + + +T Sbjct: 233 RLLEGEFIKYNSIIPEEYNLKIIAKRIVLLNSIERASLMGKDGNTNLIKFDIEDENMVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E +N+ P+ I FN KYL++++ + +DEVV L SS S Sbjct: 293 -SNSQLGMVREELNIILQGEPLQIAFNSKYLIDVLKIME-----EDEVVIELSSSVSPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K+ + N Y+++P+R+ Sbjct: 347 IKNKNTN---------NCTYLVLPVRL 364 >gi|20806544|ref|NP_621715.1| DNA polymerase III subunit beta [Thermoanaerobacter tengcongensis MB4] gi|20514981|gb|AAM23319.1| DNA polymerase III beta subunit [Thermoanaerobacter tengcongensis MB4] Length = 370 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 179/346 (51%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ +LE + A R + + T+P+ + + A ++++ + EI I IPA Sbjct: 1 MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G V A + D+V+KL +G ++ +N VN+ GD NF + EFP Sbjct: 61 IEEEGETVVPARIFSDLVKKLPEGEVEVKSDSQNT----VNVVSGDINFSIAGSNPEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E SF+L S+LK+L+++T F ++ E+ R L G+ F + +LK AVA DG Sbjct: 117 EIPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGF 174 Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 R+A+ +E + A+ S+++P + EI RIL +++ V + + +++ I++ Sbjct: 175 RMAIYSYKSEKSFFDEEAEKYSLVIPGDTIDEISRILEDEETEVIIYHTSNQVLFQIDNT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G F NY V+P E+ +N ++++R S+++ + VK + D Sbjct: 235 KVISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEI-GDSF 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + + G E + V ++I FN +YLL+ + I+ +EV Sbjct: 294 IVISSSSEKGSMSEKLEVEVKGMLLEIAFNSRYLLDALKAINEEEV 339 >gi|255010438|ref|ZP_05282564.1| putative DNA polymerase III beta chain [Bacteroides fragilis 3_1_12] gi|313148242|ref|ZP_07810435.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12] gi|313137009|gb|EFR54369.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12] Length = 374 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L Q DG L + S E + ++ + Sbjct: 1 MKFIVSSTALSSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + Q F+ E+ + + + + L EFP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPE--QPLTFEIKPDTYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S + E+ + +L + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKLVRCKT-LAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLIGALRRVSIFSSQASSLIKLRMQENQIVVS 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E V Y M I F +L++I++NIS++EV+ Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISAEEVI 340 >gi|307243425|ref|ZP_07525582.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM 17678] gi|306493235|gb|EFM65231.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM 17678] Length = 367 Score = 138 bits (347), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 99/342 (28%), Positives = 179/342 (52%), Gaps = 8/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + + +A R I K T+ + +L+ A D L+++ EI I I A Sbjct: 1 MKILCNQKKLAHAITNAQRAINTKTTVEILRGILISAEDNKLKVRGYDNEISIETEIEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ GSI +++ L+ +IVRKL D + IS E + V IS S F ++ +FP+ Sbjct: 61 VELAGSIVINSKLIGEIVRKLPD-SYISI--ETDDNFNVFISCMSSRFKIKGISAEDFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +++ + +KN++ T FA AT+ NG I+ E + + A+ DG+R Sbjct: 118 IDSIEVGDMLKISQADMKNMIRNTVFAAATDNSNQTFNGELIEIDSEKINMAAL--DGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + K S IVPR + + +LS D + +++S + ++ + R Sbjct: 176 LATMTNPFKSGVDKNLSAIVPRNTLNHLNSLLSD-DGDLYIAISPRDVVFKFDNTRLVGR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 LIDGE+ +Y++++P ++ V L++AV+R S++ +S + +K+++ +DKL + Sbjct: 235 LIDGEYADYKSLLPKEYVTKISVETKKLQEAVERASLLFTSDKNNTIKMTV-TDKLLVIT 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + G A E + V + +DI FN +Y L+ I ++S+ V Sbjct: 294 SNNENGNAYEEIGVEFEGDMLDIAFNSRYFLDGIKYLNSEYV 335 >gi|237793322|ref|YP_002860874.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] gi|229263029|gb|ACQ54062.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 367 Score = 137 bits (346), Expect = 2e-30, Method: Compositional matrix adjust. Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A L +I+RKL D +I+ ++N + I +S F L EFP Sbjct: 61 ILQEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + F + + LKN+++ T FA A +E R L G+ F I ++ L L VA DG+ Sbjct: 117 NPPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++V + ++I P K + E+ +IL + +V ++ + + I +I + Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF +Y+++IP + ++ L +++R S+M+ VK S+DK+ +T Sbjct: 233 RLLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E + V + I FN KYLL+++ + DDEVV SS S Sbjct: 293 -SNSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + + N Y+++P+R+ Sbjct: 347 IKNTELN---------NCTYLVLPVRL 364 >gi|332971205|gb|EGK10168.1| DNA-directed DNA polymerase III beta subunit [Desmospora sp. 8437] Length = 378 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/397 (25%), Positives = 200/397 (50%), Gaps = 34/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK + R+ + E + + + K T+P+ + ++ L + S ++ I IP Sbjct: 1 MKFRICRTALTEAVSQVSKAVSTKTTVPILTGIHATVDEEGLWLTGSNSDLTIQVCIPLR 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-SNFYLQ 111 +VD GS+ + + DIVRKL G Q+ + + T + H D ++F L+ Sbjct: 61 RDDKELVNVDTMGSVVLPGRIFSDIVRKLP-GDQVEWDVDERWKTTL---HSDQAHFELK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + F L + +LK+++ +T FA++T E R L G+ + + E +L Sbjct: 117 GLDPEEYPRVPRFDEEQMFSLPAELLKSMIRQTGFAVSTSEARGVLTGVLWRL--ESGRL 174 Query: 172 CAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD RL+ E D+ V + + ++++P K++ E+ +IL+ + V V L++++I + Sbjct: 175 TFVATDSIRLSRKEADVEVPEELTLENVVIPGKSLSELGKILADQTGWVDVILADNQIMV 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL+DG +P+ VIP S E+RV+ + Q+VDR +++S R +K + Sbjct: 235 RSDHLLFFSRLLDGTYPDTNRVIPKSGKTEIRVSTKEILQSVDRAALISRDGRDNVIKWT 294 Query: 290 LSSDKLCMTVDNP--DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + +K + V + D+G +E ++ + + + FN +Y+++ + + S DE+ Sbjct: 295 V-KEKGVVQVQSAAQDVGSVLEEVDAQVDGEEVSLSFNAQYMMDALRAVDS-----DEIR 348 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L + + I+ D++ +A ++++P+R Sbjct: 349 ILLTGTMTPFLIQPADRE---------DALHLIVPIR 376 >gi|150005411|ref|YP_001300155.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482] gi|254884284|ref|ZP_05256994.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA] gi|294777189|ref|ZP_06742646.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510] gi|319640630|ref|ZP_07995347.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A] gi|149933835|gb|ABR40533.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482] gi|254837077|gb|EET17386.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA] gi|294449058|gb|EFG17601.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510] gi|317387751|gb|EFV68613.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A] Length = 374 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN++P+ L++ DG L + AS E ++ ++ + Sbjct: 1 MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ + + ++++ + Q F N E+ + + + + L E+P Sbjct: 61 ESDGDGRFAVSSKTILEALKEIPE--QPLTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + V+ + R+ FA A +E+R +NGI+F I ED+ VA+DG Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V VA + + I+P+K + +L + V++ + +E+ SM Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RVS+ SS +KL LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMMLISALRRVSVFSSQASSLIKLRLSENQIQIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+ E++ Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQEIL 340 >gi|269797071|ref|YP_003310971.1| DNA polymerase III subunit beta [Veillonella parvula DSM 2008] gi|269093700|gb|ACZ23691.1| DNA polymerase III, beta subunit [Veillonella parvula DSM 2008] Length = 370 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 97/386 (25%), Positives = 185/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL G I +K E G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G INE ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ + ++ S + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|254478910|ref|ZP_05092272.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM 12653] gi|214035132|gb|EEB75844.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM 12653] Length = 385 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 178/346 (51%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ +LE + A R + + T+P+ + + A ++++ + EI I IPA Sbjct: 16 MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 75 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G V A + D+V+KL +G ++ +N VN+ GD NF + EFP Sbjct: 76 IEEEGETVVPARIFSDLVKKLPEGEVEVKSDSQNT----VNVVSGDINFSIAGSNPEEFP 131 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E SF+L S+LK+L+++T F ++ E+ R L G+ F + +LK AVA DG Sbjct: 132 EIPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGF 189 Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 R+A+ +E + A+ S+++P + EI RIL +++ V + + +++ I++ Sbjct: 190 RMAIYSYKSEKSFFDEEAEKYSLVIPGDTLDEISRILEDEETEVIIYHTSNQVLFQIDNT 249 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G F NY V+P E+ +N ++++R S+++ + VK + D Sbjct: 250 KVISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEI-GDSF 308 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + + G E + V ++I FN +YLL+ + I +EV Sbjct: 309 IVISSSSEKGSMSEKLEVEVKGMLLEIAFNSRYLLDALKAIDEEEV 354 >gi|301060276|ref|ZP_07201142.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2] gi|300445619|gb|EFK09518.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2] Length = 371 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 204/391 (52%), Gaps = 26/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R ++L+ + IIE+K+ +PV +L A++ + I A+ E+ I A Sbjct: 1 MEIKIDRDELLKSVSKVQSIIEKKSNMPVLSTILFTADNATVRISATDLELGFQETINAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSIT+S +++I+++ + KEN + IS G + F L S P EFP+ Sbjct: 61 ILEEGSITLSGRKIFEILKETRSSELHIKEKENNW---IFISDGVARFNLASIPPDEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF---FHINEEDLKLCAVATD 177 E E V + L +++ +T +A+ EE + L+G+ I+ ++L L VATD Sbjct: 118 FMEPEGVSMVSIEGETLVDMINKTIYAVTAEEAGFKLSGVLTEKLSIDGKNL-LRMVATD 176 Query: 178 GHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 GHRL++ + ++ + + +++P+K + E L +++ +V++ + + Sbjct: 177 GHRLSLIDKPLENLETLELSAGVMIPKKGMSE-LNKMAADGGTVEIGFKDKNCVAKKGNA 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +RL++ FP+Y+ VI + + + L A+ ++ I+S+ R +AVK++L +D + Sbjct: 236 FLVMRLLETNFPDYKAVIVKNEKDPVDIGKAVLMDAMRKMLILSNERYRAVKITLENDVM 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + NPD+G+A E++ + Y+ ++ FN K+ ++ + ++ S+ + LD ++S Sbjct: 296 DLVSTNPDLGEAQENLEIKYSGERVEAGFNPKFFIDTLQSMQSETI-------HLDFTDS 348 Query: 356 S-VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S F+ D D ++MPMR+ Sbjct: 349 SKPFVLTGDMDE--------GFIGLIMPMRV 371 >gi|313902783|ref|ZP_07836180.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM 13965] gi|313466903|gb|EFR62420.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM 13965] Length = 370 Score = 137 bits (345), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 194/389 (49%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+++SD+ L A R + + T+ +LL A L + A+ E+ + PA Sbjct: 1 MRLTIDQSDLHAALQVASRAVATRTTLAALSGILLVAEPEQLRLVATDLEMTVEALAPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + L ++VR+L G ++ E + G + S F L + FP+ Sbjct: 61 VQEEGSVILPGRHLAELVRRLPPG-EVQL--EVDPGHRARLLQHRSRFTLHGMDPAAFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++V+++++ RT A++T+E R L G+ F + E +L A+ATDG R Sbjct: 118 LPRVGAGSTVLFDNAVMRHVLRRTTMAVSTDESRPILTGVSFRV--EGDRLEALATDGFR 175 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A + V + + P ++P +++ E+ R+L + ++ L +++ + + + Sbjct: 176 IAASRVTLERPVEGQPVDAVIPGRSLAEVARLLPDEGIG-RLILDDTQAGFQLGEVRLIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296 RL++G +P +++P ++V ++A +R +++S R A ++L++ +L Sbjct: 235 RLLEGTYPRVLDLVPSQYPTRVQVPTRAFQEACERAALLSDTRQAARWLIRLTVEPGRLV 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T +P++G+A E + + M I FN +YL++ + I S DEV+F L + Sbjct: 295 VTASDPELGEAREEVPAQVDGEGMTIGFNARYLVDGLKAIDS-----DEVLFELTDPLKA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +RG D + FY+++P++I Sbjct: 350 SRLRGVASD---------DFFYIVLPVKI 369 >gi|237710743|ref|ZP_04541224.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA] gi|229455465|gb|EEO61186.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA] Length = 374 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN++P+ L++ DG L + AS E ++ ++ + Sbjct: 1 MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLFLTASDSETTLSTSLEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ + + ++++ + Q F N E+ + + + + L E+P Sbjct: 61 ESDGDGRFAVSSKTILEALKEIPE--QPLTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + V+ + R+ FA A +E+R +NGI+F I ED+ VA+DG Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V VA + + I+P+K + +L + V++ + +E+ SM Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RVS+ SS +KL LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+ E++ Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQEIL 340 >gi|27904524|ref|NP_777650.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340042|sp|Q89B36|DPO3B_BUCBP RecName: Full=DNA polymerase III subunit beta gi|27903921|gb|AAO26755.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 371 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 187/346 (54%), Gaps = 13/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + +++ L +I R + P+ ++LL A D + + ++ ++EI I Sbjct: 1 MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIII--- 57 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +DV GSITVS + +I + L + K + ++ I ++ + L + P Sbjct: 58 LDVTLLEPGSITVSGKKILNICQNLPKDHNL---KIQYINNKLKIVSHNNQYLLATLPIK 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ K E +F ++ + LK+++ T+F+MA +++R +LNG+FF + + L AVAT Sbjct: 115 NFPNLKISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHL--YAVAT 172 Query: 177 DGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 DG+R+A+ + + K SII+PRK V E++++L+ + + +++S + + ++L Sbjct: 173 DGYRIAICKKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNL 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++I +FP+Y ++I K++ +N T ++A+ RV+I+S+ + V + +KL Sbjct: 233 IFTSKIITEKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +T N +A E +++ Y + + N Y+++I++ I E+ Sbjct: 293 LITTSNQHDEEASEIIDIIYTNIKIKMSINASYMIDILNAIQDQEI 338 >gi|261415732|ref|YP_003249415.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372188|gb|ACX74933.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326015|gb|ADL25216.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 373 Score = 137 bits (344), Expect = 3e-30, Method: Compositional matrix adjust. Identities = 100/348 (28%), Positives = 186/348 (53%), Gaps = 14/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++++ + + L A + K+TI + + L+ LE+ A+ ++ I + Sbjct: 1 MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVEVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA--QISFFKENELGTEVNISHGD-SNFYLQSFPESE 117 + G++ ++A L+D V+ L D + I+F ++ L V I + + F ++ Sbjct: 61 GERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYL---VKIQWSERGKASIIGFDAND 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E E + +A+S L L E+T FA +T+ R LNG+F + +D K+ VATD Sbjct: 118 FPPFPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVF--LEAKDGKISMVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 GHRL A +D + A++ +I+P KA+ IL ++ DS+V+V S + I N S+ Sbjct: 176 GHRLGRAAID--QEGAELSNGVIIPHKALQHILH-MAKGDSTVEVRTSATHILFNTGSIQ 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L +G +P+Y++VIP ++ + N T + + V M++ R + ++L + L Sbjct: 233 VISKLYEGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILE 292 Query: 297 MTVDNPDMGK-AIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVV 342 ++ +PD+G + E++ + +N E I FN ++L EI+ S+EV+ Sbjct: 293 LSATDPDVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKSEEVI 340 >gi|254977344|ref|ZP_05273816.1| DNA polymerase III subunit beta [Clostridium difficile QCD-66c26] gi|255094674|ref|ZP_05324152.1| DNA polymerase III subunit beta [Clostridium difficile CIP 107932] gi|255102901|ref|ZP_05331878.1| DNA polymerase III subunit beta [Clostridium difficile QCD-63q42] gi|255308721|ref|ZP_05352892.1| DNA polymerase III subunit beta [Clostridium difficile ATCC 43255] gi|255316428|ref|ZP_05358011.1| DNA polymerase III subunit beta [Clostridium difficile QCD-76w55] gi|255519088|ref|ZP_05386764.1| DNA polymerase III subunit beta [Clostridium difficile QCD-97b34] gi|255652271|ref|ZP_05399173.1| DNA polymerase III subunit beta [Clostridium difficile QCD-37x79] gi|255657640|ref|ZP_05403049.1| DNA polymerase III subunit beta [Clostridium difficile QCD-23m63] gi|296452679|ref|ZP_06894370.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP08] gi|296880068|ref|ZP_06904037.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP07] gi|296258461|gb|EFH05365.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP08] gi|296428935|gb|EFH14813.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP07] gi|328887503|emb|CAJ66816.2| DNA polymerase III subunit beta [Clostridium difficile] Length = 368 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 111/390 (28%), Positives = 196/390 (50%), Gaps = 31/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + +G A + I K TI + +L+ +G L++ EI I + A Sbjct: 1 MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--DSNFYLQSFPESEF 118 + G + V A L DI+RKL D F E E +E NI +S F ++ + EF Sbjct: 61 IIEKGDVVVDARLFGDIIRKLPDS-----FVEIETDSENNIYINCVNSRFKIKGYAAKEF 115 Query: 119 PSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P E EE +YS + +LKN++++T FA++ ++ + L G I + +L L VA Sbjct: 116 PKLPELNEEDLYS--IPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAI 171 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG+RLAV V + + +I+P K + ++ +LS +D +VKV +E I Sbjct: 172 DGYRLAVKSCS-VDSLTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTK 229 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 + RL++G+F +Y+ ++P ++ +++N L +++R S++S S + +KLS+ DK+ Sbjct: 230 IITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSI-RDKV 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 N + G E + + + +DI FN +Y +E + NI ++E+ ++ + Sbjct: 289 MAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVN 343 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D VN Y+L+P+RI Sbjct: 344 PCIIKPTD---------DVNYIYLLLPVRI 364 >gi|88697472|gb|ABD48430.1| DnaN [Morganella morganii] gi|88697488|gb|ABD48438.1| DnaN [Morganella morganii] gi|88697490|gb|ABD48439.1| DnaN [Morganella morganii subsp. sibonii] Length = 193 Score = 137 bits (344), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 9/200 (4%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ A+P G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141 DGAQIS EL G + + G S F L + P S+FP+ + + +F L+ + LK L+ Sbjct: 61 DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLSQATLKRLI 116 Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201 E T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI ++ S+IVP Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPDH-SVIVP 173 Query: 202 RKAVGEILRILSSKDSSVKV 221 RK V E++R+L D+ +K+ Sbjct: 174 RKGVIELMRLLDGGDALLKL 193 >gi|331270705|ref|YP_004397197.1| DNA polymerase III subunit beta [Clostridium botulinum BKT015925] gi|329127255|gb|AEB77200.1| DNA polymerase III, beta subunit [Clostridium botulinum BKT015925] Length = 367 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 110/388 (28%), Positives = 189/388 (48%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + L A + L + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNELTLIGSDIDLSIETKIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI V + + +I+RKL + + EN + I S F L EFP+ Sbjct: 61 VQEEGSIVVDSKIFGEIIRKLPNSSIHINTTEN---NSIEIVCEKSKFDLIHMDAEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + VLKN+++ T FA+A +E R L GI F + ++ L L VA DG+R Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDKRLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ I + S ++P K E+ +ILS + +V ++ + + I N+ + R Sbjct: 176 LALRSNLIDNE--NTISAVIPGKTFNEVSKILSEDEKNVNITFTPNHILFNLGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNC--TNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 L++GEF Y ++IP + +L+VN L ++R S+M VK + +D L + Sbjct: 234 LLEGEFIKYNSIIP--EEYKLKVNAKRAELLNCIERASLMGKDGNTNLVKFDIKNDNLVI 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T N +G+ E +N+ + I FN KYL++++ + DDE+V DSS S Sbjct: 292 T-SNSQLGRVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIVMEFDSSVSPC 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K+ ++ Y+++P+R+ Sbjct: 346 VIKSKENNTYT---------YLVLPVRL 364 >gi|149370683|ref|ZP_01890372.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49] gi|149356234|gb|EDM44791.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49] Length = 372 Score = 136 bits (343), Expect = 4e-30, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 173/342 (50%), Gaps = 7/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L II NT+P+ + L + + L++ AS E +T + Sbjct: 1 MKFIVSSSYLLKKLQVLGGIINNNNTLPILDNFLFELHGNSLKVSASDLESTVTSMLDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ + A LL D ++ + ++F E E++ +HG + L +EFPS Sbjct: 61 SNEVGNVCIPARLLLDTLKTFPE-QPLTFTLEENNTVEISSNHG--KYALAYADGAEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + +L + +T FA +++R ++G+FF N + L VATD H+ Sbjct: 118 AVELKDPSSTIIQGDILATAISKTIFASGNDDLRPVMSGVFFQFNTDGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + V + A+ I+P+K + + IL+ + V V ++S + + + R Sbjct: 176 LVKYTREDV-KAAETAEFIMPKKPLNLLKSILAGSEDEVVVEYNDSNAKFSFDGTELICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSISRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D KA E + Y M I FN ++L E+++N++ D+V Sbjct: 295 DVDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLTCDDV 336 >gi|269926108|ref|YP_003322731.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789768|gb|ACZ41909.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC BAA-798] Length = 376 Score = 136 bits (343), Expect = 5e-30, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 190/393 (48%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++ L R + + T+P+ ++LL G L+++A+ E+ IT + A Sbjct: 1 MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWVGAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G TV A L + + L + + + NE G +++++ G S + +FP+ Sbjct: 61 IEREGVTTVPARLFTEFISSLPN--EKVLLELNE-GHKLHVAAGHSAADIHGMDPEDFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VLK ++E+ FA AT++ R L G+ F I+ + L L A DG R Sbjct: 118 VPSASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGDKLTLAAA--DGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMS 238 L+V E I + A+ ++IVP KA+ + R++ + V+++++ +S+I E++++ Sbjct: 176 LSVKEQSINSS-AESVNVIVPAKALDALSRLIGDHEEQVEITINPNKSQIVFQAENINVI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------S 292 RLIDG FPNY +IP V+ R+A+ R I AVKL++S + Sbjct: 235 SRLIDGNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDT 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 K+ ++ ++G +S+ I FN +YL +++ I S D+V S Sbjct: 295 GKIVVSATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIES-----DQVALETQS 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NS IR S +V+MPM + Sbjct: 350 PNSPGVIRPVGNGSYT---------HVIMPMHL 373 >gi|163784003|ref|ZP_02178965.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159880725|gb|EDP74267.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 365 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 101/391 (25%), Positives = 198/391 (50%), Gaps = 33/391 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T++++ + ++L A E+K+ +P+ + LL+A DG L ++ + E+ + ++ A Sbjct: 1 MELTIDKTTLQDVLRKAISATEKKSALPILSNFLLEAKDGKLIVEGTDLEVHVKISVFAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V+A L DI R L ++ K ++ + + I G + + L + ++P Sbjct: 61 VEEEGKACVNAKKLTDIARLLP--SETVHIKTDD--SSLKIKSGKTKYSLPTVAPEDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF-----HINEEDLKLCAVA 175 +F ++ + L+N + +T +A + EE RY L G F HI+ VA Sbjct: 117 MYPFPEDTAFLISGADLQNAINKTLYAASKEESRYALQGDLFKSRNNHID-------VVA 169 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA+ ++ Q+ +++P+K++ E+ ++L+ + V+++ +E + Sbjct: 170 TDGHRLALYIIEREGQLDTNVEVVIPQKSLNELRKLLTGAED-VEMAATEQYAFFKTKEW 228 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G FP+Y VIP E+ ++ +AV RVS + + +K +L + L Sbjct: 229 ILMTRLLEGAFPDYTQVIPDEFSIEIILDKKETLEAVKRVSAVVEGDTKPIKFTLKPNVL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF-RLDSSN 354 + + + G+A++ + V Y I FN KY++E I EVVDD+ + + + N Sbjct: 289 ELRSFSQEYGEAVDEIEVQYEGEEFTIGFNAKYIIEAI------EVVDDDKFYMKFTNPN 342 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + + +N+ A ++MPM I Sbjct: 343 SQTMVEPIE-------NNRYKA--IIMPMDI 364 >gi|88697474|gb|ABD48431.1| DnaN [Morganella morganii] gi|88697480|gb|ABD48434.1| DnaN [Morganella morganii] gi|88697482|gb|ABD48435.1| DnaN [Morganella morganii] gi|88697484|gb|ABD48436.1| DnaN [Morganella morganii] gi|88697486|gb|ABD48437.1| DnaN [Morganella morganii subsp. morganii] gi|88697508|gb|ABD48448.1| DnaN [Morganella morganii] Length = 193 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 78/200 (39%), Positives = 118/200 (59%), Gaps = 9/200 (4%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ A+P G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141 DGAQIS EL G + + G S F L + P S+FP+ + + +F L + LK L+ Sbjct: 61 DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLI 116 Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201 E T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI ++ S+IVP Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPDH-SVIVP 173 Query: 202 RKAVGEILRILSSKDSSVKV 221 RK V E++R+L D+ +K+ Sbjct: 174 RKGVIELMRLLDGGDALLKL 193 >gi|325298420|ref|YP_004258337.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] gi|324317973|gb|ADY35864.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] Length = 374 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 95/345 (27%), Positives = 177/345 (51%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V +++ L R+I KN++P+ LL+ +DG L + +S E ++ +I + Sbjct: 1 MKFIVSSTNLFNHLQAISRVINSKNSLPILDCFLLELHDGTLSMTSSDNETTLSTSIEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ L + ++++ + Q F+ N E+ + + + + L +E+P Sbjct: 61 EFDGDGRFAVSSRTLLEALKEIPE--QPLAFQVNLDTLEITVQYQNGQYNLMGQNANEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++ + + +L + V R FA A +E+R +NGI+F I ED+ L VA+DG Sbjct: 119 QPQDLGANAVRLTMPAEILMSGVNRCIFATADDELRPVMNGIYFDITPEDITL--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V A + + I+P+K + +L + V++ + +E+ M Sbjct: 177 HKL-VRNKTYAAHGTEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + ++ +L A+ RVS+ SS +KL+LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAILDRASLISALRRVSVFSSQASSLIKLNLSDNQIKIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y+ PM I F +L++I++NI + V Sbjct: 296 AQDIDFSTSAEETVICQYDGNPMSIGFKSSFLIDILNNIPAANVT 340 >gi|297184135|gb|ADI20254.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 373 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 166/343 (48%), Gaps = 8/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L II+ NT+P+ + L + G L + AS E ++ + Sbjct: 1 MKFIVSSSKLLKQLQLIGGIIQSNNTLPILDNFLFELKQGELTVSASDLETMMSVNLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L D ++ + F E E+ +G + L EFP Sbjct: 61 SEDHGAAAVPAKTLLDTLKTFPEQPLTFTFDEGAHSIELASDYG--KYSLAYIDGEEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + L + L + +T FA +E+R ++G+FF E L VATD H+ Sbjct: 119 FPELEDASTANLPAEALVTGITKTLFATGNDELRPVMSGVFFQF--ESNSLTFVATDAHK 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+ A A I+P+K + + LS S V+V + + +++ + Sbjct: 177 LVRYRRTDLGA--ADTAEFIMPKKPLNMLRGSLSYDSSEVEVVYNNTNARFTFDNVVLVC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP SN + ++ + +V RV+I S+ ++L L+ ++ ++ Sbjct: 235 RLIDGKYPNYEAVIPQSNPNVMLIDRSAFSSSVKRVAIFSNKTTHQIRLKLAGAEISVSA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++PD KA E ++ Y M+I FN ++LLE++ N+ SD V Sbjct: 295 EDPDFSNKAHERISCDYQGDDMEIGFNSRFLLEMLSNLGSDNV 337 >gi|168183728|ref|ZP_02618392.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] gi|182673196|gb|EDT85157.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] Length = 367 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 110/389 (28%), Positives = 200/389 (51%), Gaps = 29/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKAKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+I + A L +I+RKL D +I+ ++N + I +S F L EFP Sbjct: 61 ILQEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116 Query: 120 STK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + E ++S + + LKN+++ T FA A +E R L G+ F I ++ L L VA D Sbjct: 117 NPPIINENMIFSID--ENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G+RLA+ ++V + ++I P K + E+ +IL + +V ++ + + I +I + Sbjct: 173 GYRLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKI 230 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLC 296 RL++GEF +Y+++IP + ++ L +++R S+M+ VK S+DK+ Sbjct: 231 ISRLLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIV 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T N +G E + V + I FN KYLL+++ + DDEVV SS S Sbjct: 291 IT-SNSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSP 344 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + + N Y+++P+R+ Sbjct: 345 CIIKNTELN---------NCTYLVLPVRL 364 >gi|242243254|ref|ZP_04797699.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144] gi|242233203|gb|EES35515.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144] gi|319399913|gb|EFV88159.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis FRI909] gi|329735734|gb|EGG72015.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU028] Length = 377 Score = 136 bits (342), Expect = 6e-30, Method: Compositional matrix adjust. Identities = 99/376 (26%), Positives = 190/376 (50%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T I+ G S F L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E +N E + I FN KY+++ + I +DEV EV F Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 352 -GTMKPFILKPKDDDS 366 >gi|284109083|ref|ZP_06386475.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829830|gb|EFC34123.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp. WGA-A3] Length = 281 Score = 136 bits (342), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 15/273 (5%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 V I G F + P +FP E L L L+ +T FA+ + RY LN Sbjct: 3 VTIKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLN 62 Query: 159 GIFFHINEED----LKLCAVATDGHRLAVAE----VDIVAQIAKMPSIIVPRKAVGEILR 210 G+ + E ++L V TDGHRLA+AE D A + + +IVP+KA EI R Sbjct: 63 GLLIVVTTEGESPMIRL--VGTDGHRLAMAEQKLETDAKAPVEQEQKVIVPKKAAAEIRR 120 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 +L + +++ + L ++ RL++G +PNYQ V+P +++K++ N +L Sbjct: 121 LLEEGGDEPMIGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEG 180 Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330 A+ RVS++S + AVKL+ S + + +PDMG+A + + + FN +YLL Sbjct: 181 ALRRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLL 240 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +++ + S + VV +++S S IR +D Sbjct: 241 DVLGVMES-----ETVVLNMEASLSPCLIREED 268 >gi|237756531|ref|ZP_04585058.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691305|gb|EEP60386.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 362 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 108/385 (28%), Positives = 192/385 (49%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + D+ E I E+K +P+ + LL+A DG L + + E+ + IPA Sbjct: 1 MKLKAYKKDLQEAFKKV--ISEKKAALPILTNFLLKAEDGKLTVYGTDLEVYTSYTIPAD 58 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ V++ + DI + L + + G + I+ G + + L +F +FP Sbjct: 59 VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ L + +T +A++ +E R+ LNG+ F + KL VATDGHR Sbjct: 115 PESYPSDLAILISGQELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + IVP+KA+ EI +++S + V+V++S S I + +S R Sbjct: 173 LALYSTEITGK-GLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYILSAR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FPNY VIP S + E+ ++ + L ++ RV I + +KL L +KL ++ Sbjct: 231 LLEGVFPNYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENDNKPIKLKLFDNKLIISTP 290 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 A + + V Y+ +I FN KY+L+ + DE+ D +V + + +S I Sbjct: 291 PTSDAYAEDEIEVNYDGEEFEIGFNGKYILDAV-----DEIEDKNIVVKFINKDSQTVII 345 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + V+MPM I Sbjct: 346 PENPEER--------YLAVVMPMTI 362 >gi|71899734|ref|ZP_00681886.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730529|gb|EAO32608.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 218 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 75/209 (35%), Positives = 123/209 (58%), Gaps = 2/209 (0%) Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192 A +LK L+ERT FAMA +++RYYLNG+ + D KL VATDGHRLA+ E ++ Sbjct: 1 AEVLLKELIERTAFAMAQQDVRYYLNGLLLDLR--DTKLRCVATDGHRLALCETELEQAK 58 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ V Sbjct: 59 DLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGV 118 Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312 IP D+E++V LR A+ R +I+S+ + + V++ +S +L + NP+ +A E + Sbjct: 119 IPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAHNPEQEEAQEEIE 178 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + I FN YLL+ + ++ D V Sbjct: 179 AQTIVDGLAIGFNVNYLLDALSSLRGDFV 207 >gi|158319061|ref|YP_001511568.1| DNA polymerase III subunit beta [Alkaliphilus oremlandii OhILAs] gi|158139260|gb|ABW17572.1| DNA polymerase III, beta subunit [Alkaliphilus oremlandii OhILAs] Length = 368 Score = 135 bits (341), Expect = 7e-30, Method: Compositional matrix adjust. Identities = 107/379 (28%), Positives = 196/379 (51%), Gaps = 30/379 (7%) Query: 14 LGHACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69 L H+ I+++ K+T+P+ + L+A + L + + EI I + A++ GSI V Sbjct: 10 LMHSISIVQKAVSSKSTLPIIKGIYLEAYEDHLRLVGTDMEIGIDHVMEANIIEEGSIVV 69 Query: 70 SAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 A L +I+R+L D ++S + N+L I + F + S+ SEFP E E Sbjct: 70 DARLFSEIIRRLPDYEVEVSLQENNQLL----IKCAATEFNILSYNASEFPELPEIEEDQ 125 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 E++ + KN++ +T FA A +E R L G+ I ED L VA DG+R+A+ + + Sbjct: 126 IHEISQDLFKNMIRQTVFATAQDETRPILTGVLMEI--EDDILSMVALDGYRVALRKGKL 183 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 A + +++P K + E+ RI++ + D ++K+SL+ + + + + RL++GEF Sbjct: 184 NAHLNN--RVVIPGKTLNEVNRIMTGEEDENIKISLTNNHALFTVGNTKLISRLLEGEFM 241 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMGK 306 NY +IP ++VN +L +++R S++ R VK S++ K+ + N ++G Sbjct: 242 NYNQIIPKEFKSRVKVNTRSLLDSIERASLLGKEGRNNLVKFSITDYKMVIN-SNSELGN 300 Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 E + + + I FN KY ++ + +V+DDE V+ ++N S G K Sbjct: 301 VHEEILIELEGDDLQIAFNSKYFIDAL------KVIDDESVYLEFTTNLS---PGIIKPI 351 Query: 367 KNNKDNKVNAFYVLMPMRI 385 N+ N Y+++P+R+ Sbjct: 352 TND-----NTIYLVLPVRL 365 >gi|188996889|ref|YP_001931140.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931956|gb|ACD66586.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 362 Score = 135 bits (341), Expect = 8e-30, Method: Compositional matrix adjust. Identities = 100/342 (29%), Positives = 175/342 (51%), Gaps = 10/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + D+ E I E+K +P+ + LL+A DG L + + E+ + IPA Sbjct: 1 MKLKAYKKDLQEAFKKV--ISEKKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIPAD 58 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ V++ + DI + L + + G + I+ G + + L +F +FP Sbjct: 59 VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ L + +T +A++ +E R+ LNG+ F + KL VATDGHR Sbjct: 115 PEAFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + IVP+KA+ EI +++S + V+V++S S I + +S R Sbjct: 173 LALYSTEITGK-GLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYVLSAR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FP+Y VIP S + E+ ++ + L ++ RV I + +KL L +KL ++ Sbjct: 231 LLEGVFPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTP 290 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 A + + V Y+ +I FN KY+LE +D I +V Sbjct: 291 PTSDTYAEDEIEVNYDGEEFEIGFNGKYILEAVDEIEDKNIV 332 >gi|307717719|ref|YP_003873251.1| DNA polymerase III subunit beta [Spirochaeta thermophila DSM 6192] gi|306531444|gb|ADN00978.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6192] Length = 367 Score = 135 bits (341), Expect = 9e-30, Method: Compositional matrix adjust. Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ER ++++ + A II KN + + +VLL A D L I+A+ ++ + P Sbjct: 1 MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSRLTIRATDLKVGFETSSPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV L I+R L GA + F + + NF L++ ++P Sbjct: 61 VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 Y F + S L ++ T FA++ +E RY++NG+F E+ L + VATDG R Sbjct: 120 MPLHGDSY-FSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E + + +I+P K + + R L + V V++ E + L + +S Sbjct: 177 LAYIEKGVDGGVPDFNGVIIPPKIL-HLARKLLPGEGMVDVAIGEKHVFLRYGDVYLSSN 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G FP Y+ VIP + +A+ RVS++ + + V L++ L ++ + Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVSSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E + Y + + I NY YLLE + ++ ++V E+ F S +V Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVMTEEQV---EIAFTEPSRAITV--- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + F+++MPM++ Sbjct: 350 --------RPVPEREFFHIVMPMQL 366 >gi|94264232|ref|ZP_01288027.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|94266206|ref|ZP_01289915.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93453213|gb|EAT03671.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93455343|gb|EAT05547.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 376 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 107/389 (27%), Positives = 196/389 (50%), Gaps = 27/389 (6%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V R + L L I +K T+ V ++LL+A + L + + E+ + +PA V Sbjct: 7 VPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVPAEVTSP 66 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G IT+ A L+++VR+ Q QI +++ T V I+ G+S+ L EFP+ Sbjct: 67 GEITLPARKLFELVREAQ-ADQIEIAEQDN--TRVKINAGNSDCRLAGMAADEFPAFPPH 123 Query: 125 EYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFF--HINEEDLKLCAVATDGHRL 181 + + + V++ L+++T +A+A E E + L G+ I E+ L V++DGHRL Sbjct: 124 QDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDGHRL 183 Query: 182 AVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 A+ E + A + + I+VPRK + E+ R L + +++ E ++ + +M Sbjct: 184 AMMESKVEADLGPLAMDRVILVPRKGMQEV-RKLCESGGQIALAIEEKQLVVKAGEYTMV 242 Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL+ G+FP+Y+++I + + +N +L ++ RV+I + R AV + + ++ + Sbjct: 243 ARLMSGDFPDYKSIIQVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENSRMTL 302 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSS 356 + N D G A E + + Y M + FN KY E + +V+D E+V +++ +S Sbjct: 303 SSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEAL------QVMDSEMVKAYINAEDSP 356 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++G DKD V+MPM+I Sbjct: 357 CLLQG-DKDP--------GYLSVIMPMKI 376 >gi|300781939|ref|YP_003762230.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] gi|299791453|gb|ADJ41828.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] Length = 377 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/393 (26%), Positives = 184/393 (46%), Gaps = 26/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DG---LLEIKASGPEIEITGA 56 MKI VER + + + R + + +PV VLL A DG L + E+ T Sbjct: 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGSDGETDALTVSGFDYEVSATVG 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +PA++ G + VS LL DI + L AQ + G I+ G + F L + P Sbjct: 61 VPATIADGGRLLVSGRLLADITKALP--AQPVEISVD--GARATITCGTARFSLPTMPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + ++ ELA V + A ++ L G+ I+ L L VAT Sbjct: 117 DYPQLPSQP-AFAGELAGDAFGQAVTQVVVAAGKDDTLPMLTGMRLEISGSSLTL--VAT 173 Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIE 233 D RLA+ E A+ +++VP + + E + L + ++++++L+ E + L+ Sbjct: 174 DRFRLAMREFTWQPAEGLADAAVLVPARTLAEAAKTLGASGATIRLALASGEGLLGLSGS 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP Y+ ++P S+ ++ + L +++ RVS+++ Q V+L + Sbjct: 234 GRYTTTRLLDAEFPPYRQLLPASHSSRAVIDVSALTESIKRVSLVAERGTQ-VRLEFGDN 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D G A E + V Y P+ I FN YL++ + + SD E+ F + Sbjct: 293 TLRLSAGGDDEGSAEEELQVEYEGEPVTIAFNPGYLVDGLGALHSDRA---ELTF--TTP 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 N I+ D + N V + Y+LMP+R+ Sbjct: 348 NRPALIKPADAEG-----NVVPGYLYLLMPVRL 375 >gi|330444456|ref|YP_004377442.1| DNA polymerase III subunit beta [Chlamydophila pecorum E58] gi|328807566|gb|AEB41739.1| DNA polymerase III, beta subunit [Chlamydophila pecorum E58] Length = 367 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 192/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++++ L+ ++ + IPV HVL++ N+ L A+ + A Sbjct: 1 MKFAISKNELGSLIKKIQSVVPQNTPIPVLSHVLMETNNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++++ + + ++++L ++ +IS G I+ G S F L S + +FP Sbjct: 61 VYEKGAVSIPSKRFFQLIKELTENNIEISAIA----GEMAQITSGSSCFRLLSMGKQDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK++++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDMQNAVRFTLPTEQLKDMLQRTSFAVSREESRYVLTGVLLSITNGIATI--VGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + ++ + + I+P KAV EI+++ SS+D+ + L + +I + ++ + Sbjct: 175 RLAKIDAEVSLDKSFVGDYIIPIKAVEEIIKLCSSEDTETTIFLDQDKIAVESDNTLLIT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI + + ++ L + +V++ ++ +VK + + +L +T Sbjct: 235 KLLSGEFPDFTPVISTQSSVQFDLHREELIALLKQVALFTNENSHSVKFTFTPGELTLTA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V + DS N + Sbjct: 295 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 351 ------------DSTRSLFVIMPMRL 364 >gi|294792396|ref|ZP_06757543.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27] gi|294456295|gb|EFG24658.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27] Length = 370 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 186/386 (48%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL G I +K E G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + + +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDNFAMKELIDLTNYAAATDEDRPIFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ + ++ S + + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSENNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E ++V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVSVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|297205284|ref|ZP_06922680.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus jensenii JV-V16] gi|297149862|gb|EFH30159.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus jensenii JV-V16] Length = 386 Score = 135 bits (340), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 174/344 (50%), Gaps = 27/344 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ L+ L + R I + TIP+ + + ++ L + S +I I IP S Sbjct: 11 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 70 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF E + G + IS +S F + + Sbjct: 71 ADLTVESTGSIVLPARFFNEIIKKLP-GKDFSF--EVKEGLQTQISSENSEFTINGLDAN 127 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +FE++ + ++ T+FA++T+E R L G+ F N+ +K AVAT Sbjct: 128 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIK--AVAT 185 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ +D+ +I+P K++ E+ RI+ +D V V+ ++++ I ++S Sbjct: 186 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 245 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL++G +P+ ++P ++ + +L QA+DRVS+++ R VKL+L ++ Sbjct: 246 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 305 Query: 296 CMTV--DNPDMG--------KAIESMNVYYNECPMDICFNYKYL 329 + D+P++G K I N ++I FN YL Sbjct: 306 VAQLEGDSPEIGTVEEKPWAKQITGQN-------LEISFNPDYL 342 >gi|289577267|ref|YP_003475894.1| DNA polymerase III subunit beta [Thermoanaerobacter italicus Ab9] gi|289526980|gb|ADD01332.1| DNA polymerase III, beta subunit [Thermoanaerobacter italicus Ab9] Length = 370 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 94/346 (27%), Positives = 177/346 (51%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKDQVKFSGTDLDIGIECQIPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G I V A + ++VRKL +G +I E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEGDVKI----ESDSQNTVNVICDSINFTIAGSDAVEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+L ++LK+L+++T F +A E+ R L G+ F + ++K AVA DG Sbjct: 117 EIPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGF 174 Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 R+A+ +E + + SI++P K + EI +IL +++ + + + +++ IE+ Sbjct: 175 RMAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G F NY V+P E+ V L ++++R S+++ + +K + DK Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + GK +E + V ++I FN +YLL+ + I +E+ Sbjct: 294 ITVSSNSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAIDEEEI 339 >gi|295425826|ref|ZP_06818507.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus amylolyticus DSM 11664] gi|295064519|gb|EFG55446.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus amylolyticus DSM 11664] Length = 376 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 99/350 (28%), Positives = 176/350 (50%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L ++ L + S +I I IP S Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLSEDQLVLTGSDTDISIEIKIPVS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF E + + IS +S F + + Sbjct: 61 EDLSVESTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKISSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF +A +L+ ++ T FA+AT+E R L+G+ F + + +K AVAT Sbjct: 118 NYPRLPEIPEESSFTIAGKILREIINETQFAVATQESRLVLSGVHFTFSPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV ++++ I +++ Sbjct: 176 DSHRLSERTIALENGPQTKTDLIIPGKSLQELSRIIGEADPEVKVCPGDNQVLCRIGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD-- 293 RL+DG +P+ ++P + + + +L A+DR S+++ R V L+L ++ Sbjct: 236 FYSRLLDGNYPDTDRLLPTESTTSVEFDLADLSSALDRASLLTHAGRNNVVNLNLDTENG 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 K+ +T + ++G E +N + + I FN YL + + +D +V Sbjct: 296 KVKLTGTSAEIGNVEEDVNFKNLDGKNLTISFNPDYLRDALRASVTDAIV 345 >gi|242372601|ref|ZP_04818175.1| DNA polymerase III subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349656|gb|EES41257.1| DNA polymerase III subunit beta [Staphylococcus epidermidis M23864:W1] Length = 377 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 188/376 (50%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 IDGEDIVDISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQL-EDASENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGENNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E +N E + I FN KY+++ + I +DEV EV F Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 352 -GTMKPFILKPKDDDS 366 >gi|126697568|ref|YP_001086465.1| DNA polymerase III subunit beta [Clostridium difficile 630] gi|260681771|ref|YP_003213056.1| DNA polymerase III subunit beta [Clostridium difficile CD196] gi|260207934|emb|CBA60043.1| DNA polymerase III, beta chain [Clostridium difficile CD196] Length = 402 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 31/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +KI + + +G A + I K TI + +L+ +G L++ EI I + A Sbjct: 35 LKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAE 94 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--DSNFYLQSFPESEF 118 + G + V A L DI+RKL D F E E +E NI +S F ++ + EF Sbjct: 95 IIEKGDVVVDARLFGDIIRKLPDS-----FVEIETDSENNIYINCVNSRFKIKGYAAKEF 149 Query: 119 PSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P E EE +YS + +LKN++++T FA++ ++ + L G I + +L L VA Sbjct: 150 PKLPELNEEDLYS--IPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAI 205 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG+RLAV V + + +I+P K + ++ +LS +D +VKV +E I Sbjct: 206 DGYRLAVKSCS-VDSLTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTK 263 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 + RL++G+F +Y+ ++P ++ +++N L +++R S++S S + +KLS+ DK+ Sbjct: 264 IITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSI-RDKV 322 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 N + G E + + + +DI FN +Y +E + NI ++E+ ++ + Sbjct: 323 MAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVN 377 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D VN Y+L+P+RI Sbjct: 378 PCIIKPTD---------DVNYIYLLLPVRI 398 >gi|52078493|ref|YP_077284.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580] gi|52783857|ref|YP_089686.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580] gi|319648519|ref|ZP_08002735.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2] gi|52001704|gb|AAU21646.1| DNA polymerase III (beta subunit) [Bacillus licheniformis ATCC 14580] gi|52346359|gb|AAU38993.1| DnaN [Bacillus licheniformis ATCC 14580] gi|317389598|gb|EFV70409.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2] Length = 378 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 189/352 (53%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL + + +N+ T I G + F L Sbjct: 61 DGDLEIVTIEQPGSIVLQARFFSEIVKKLP-MSTVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 SE+P + E ++F++ + +LKNL+ +T FA++T E R L G+ +++ +L +C Sbjct: 118 LDASEYPLLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWNVTGGEL-IC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 177 T-ATDSHRLALRKAKLDINEDSSYNVVIPGKSLTELSKILDDHQELVDIVITETQVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL+DG +P+ +IP + L VN QA+DR S+++ R VKLS + Sbjct: 236 KNVLFFSRLLDGNYPDTNRLIPQESKTNLIVNTKEFLQAIDRASLLAREGRNNVVKLSAA 295 Query: 292 SDK-LCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 +++ + ++ ++P++GK +E++N E + I F+ KY+L+ + + +++ Sbjct: 296 ANESIEISSNSPEIGKVVETVNAEQIEGEDLKISFSPKYMLDALKVLEGEDI 347 >gi|256851675|ref|ZP_05557063.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260661608|ref|ZP_05862520.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|282934241|ref|ZP_06339518.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] gi|256615633|gb|EEU20822.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260547665|gb|EEX23643.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|281301715|gb|EFA93982.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] Length = 376 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 98/344 (28%), Positives = 174/344 (50%), Gaps = 27/344 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ L+ L + R I + TIP+ + + ++ L + S +I I IP S Sbjct: 1 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF E + G + IS +S F + + Sbjct: 61 ADLTVESTGSIVLPARFFNEIIKKLP-GKDFSF--EVKEGLQTQISSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +FE++ + ++ T+FA++T+E R L G+ F N+ +K AVAT Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ +D+ +I+P K++ E+ RI+ +D V V+ ++++ I ++S Sbjct: 176 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL++G +P+ ++P ++ + +L QA+DRVS+++ R VKL+L ++ Sbjct: 236 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 295 Query: 296 CMTV--DNPDMG--------KAIESMNVYYNECPMDICFNYKYL 329 + D+P++G K I N ++I FN YL Sbjct: 296 VAQLEGDSPEIGTVEEKPWAKQITGQN-------LEISFNPDYL 332 >gi|146329375|ref|YP_001208942.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A] gi|146232845|gb|ABQ13823.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A] Length = 414 Score = 135 bits (339), Expect = 1e-29, Method: Compositional matrix adjust. Identities = 106/431 (24%), Positives = 192/431 (44%), Gaps = 63/431 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + + + L I++RK T+ + H+ L+ + L + + EI + IP Sbjct: 1 MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+IT+ Y ++++ DG I+ N+ + +I G + L + P +FP Sbjct: 61 NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQ---QFHIHAGKTIVKLATLPAKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y++ L +S+ NL+ + +A+A ++ R YLNG+ +I ++ L AV+TDGH Sbjct: 118 IPLDNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----------------SKDSSVKVS- 222 RLA A++ IA IVP KAV E+++ LS S D + +++ Sbjct: 178 RLACAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNE 237 Query: 223 ---------------------------LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 SE + L I S S RLIDG++P Y+ VIP Sbjct: 238 QIDILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPL 297 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY- 314 + + + L A+ R ++ + R V+L L +T N + ES+ + Sbjct: 298 QQENPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIIN 357 Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 ++I N YL++++ ++ + V L++ + + KD+ Sbjct: 358 SGNLTLEIGLNVNYLIDVLMHLEG-----ETVQLHLENGEQACLLMSKDEP--------- 403 Query: 375 NAFYVLMPMRI 385 + +V+MPMRI Sbjct: 404 DVRHVIMPMRI 414 >gi|22299892|ref|NP_683139.1| DNA polymerase III subunit beta [Thermosynechococcus elongatus BP-1] gi|22296077|dbj|BAC09901.1| DNA polymerase III beta subunit [Thermosynechococcus elongatus BP-1] Length = 370 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 183/344 (53%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S + L R+ + P+ ++LLQA G L + + + + A+ Sbjct: 1 MKVVCSQSVLSSKLAPLSRVAPSNPSHPILANILLQAEGGRLGLSVFDLSLGMQIWLDAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G+ITVSA L ++V ++ + I E+ T V + +G F +Q EFP+ Sbjct: 61 VKVPGAITVSAKLFSEMVSRMPN-RDIEITAED---TRVILDYGSGFFEIQGMSAEEFPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V L + L+ ++ + FA +T+E + L+G+ H+ E +L ATDGHR Sbjct: 117 LPTLEDVTPITLTAEALRRGLQGSLFAASTDENKQILSGL--HVTFERDRLEFAATDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-LSMSV 239 LAV + + I +P K++ ++ R+++ +D V + +++ +I + ++ Sbjct: 175 LAVTVTEQPVPAEPLSPITIPAKSLKDLERLMAKQDGMVALRCDPTQVVFDIGNDARITS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLCM 297 RL++G++PNY+ +IP + +++ V + L A++RV+I+++ + VK+++ ++ +L + Sbjct: 235 RLLEGQYPNYRQLIPKTFARQVTVERSALADALERVAILAAQKNNVVKINIDTEAQELKL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + P +G E++ + M + FN KYLLE + ++S +V Sbjct: 295 SAEAPQLGSGEENLPAQISGESMVVAFNVKYLLEGLKVMNSADV 338 >gi|317120851|ref|YP_004100854.1| DNA polymerase III subunit beta [Thermaerobacter marianensis DSM 12885] gi|315590831|gb|ADU50127.1| DNA polymerase III, beta subunit [Thermaerobacter marianensis DSM 12885] Length = 369 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 192/389 (49%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +++SD+ L A R + ++T+PV +LL A L + A+ E+ + PA Sbjct: 1 MRLVIDQSDLHAALQVAIRGVATRSTLPVLSGILLVAEPEQLRLVATDMEMTVEVLAPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + L +IVR+L G ++ E G I S F + FP+ Sbjct: 61 VQEEGSVVLPGRHLVEIVRRLPPG-EVHLEVE---GFRARILQERSRFTIHGTDPGIFPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +L+N++ RT FA++T+E R L G+ F E +L AVATDG R Sbjct: 117 MPHISAGSTVLFDNGLLRNVLRRTTFAVSTDEGRPILTGVSF--RAEGDRLQAVATDGFR 174 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A V + + P + ++P +++ E+ R+L + ++ L E++ + + + Sbjct: 175 IAACSVTLERPVEGQPVAAVIPGRSLAEVARLLPDQGIG-RLLLDETQAGFQLGEVRLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296 RL+DG +P+ ++P +++ ++A +R ++++ R A ++L++ +L Sbjct: 234 RLVDGVYPDVLGLVPSEYPTRVQLPTRAFQEACERAALLADTRQPARWVIRLAVEPGRLV 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T +P++G+A E + + M I FN +YL++ + I + +EV+F L + Sbjct: 294 ITASDPELGEAREEIPAQVDGEGMVIGFNARYLVDGLKAIDT-----EEVLFELTEPLKA 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +RG D + Y+++P++I Sbjct: 349 SRLRGVGAD---------DFTYIVLPVKI 368 >gi|194016230|ref|ZP_03054844.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061] gi|194011703|gb|EDW21271.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061] Length = 378 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 182/352 (51%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+++ ++E + + + + TIP+ + + A+D + + S +I I I Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFISQR 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL ++N L NI G + F L Sbjct: 61 DGDLEVITIDRPGSIVLQARFFSEIVKKLPMTTVEIEVEQNHL---TNIRSGSAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++F++ + +LKNL+ +T FA++T E R L G+ + + + +L +C Sbjct: 118 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWRVEKGEL-IC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ RIL V + ++E+++ Sbjct: 177 T-ATDSHRLALRKAKLDIDEGSSYNVVIPGKSLTELSRILDDGQDLVSIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL+DG +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 236 QNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLSAD 295 Query: 292 SDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ L ++ ++P++GK +E++ + I F+ KY+L+ + + E+ Sbjct: 296 PEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGTEI 347 >gi|157690800|ref|YP_001485262.1| DNA polymerase III subunit beta [Bacillus pumilus SAFR-032] gi|157679558|gb|ABV60702.1| DNA-directed DNA polymerase III beta subunit [Bacillus pumilus SAFR-032] Length = 421 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 187/354 (52%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+++ ++E + + + + TIP+ + + A+D + + S +I I IP Sbjct: 44 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPQR 103 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL ++N L I G + F L Sbjct: 104 DGDLEVITIDRPGSIVLQARFFSEIVKKLPMATVEIEVEQNHLTI---IRSGSAEFNLNG 160 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++F++ + +LKNL+ +T FA++T E R L G+ + + + +L +C Sbjct: 161 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEKGEL-IC 219 Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ A++DI + + ++++P K++ E+ RIL V + ++E+++ Sbjct: 220 T-ATDSHRLALRKAKLDIDEESSY--NVVIPGKSLTELSRILDDGQDLVSIVITETQVLF 276 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 +++ RL+DG +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 277 KAQNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLS 336 Query: 290 LSSDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ L ++ ++P++GK +E++ + I F+ KY+L+ + + E+ Sbjct: 337 ADPEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGTEI 390 >gi|83588877|ref|YP_428886.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC 39073] gi|83571791|gb|ABC18343.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC 39073] Length = 374 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/392 (24%), Positives = 187/392 (47%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++ + R + T +LLQA++ L ++ + ++ I P Sbjct: 1 MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A + ++VR+L + + ++N V I++ S L S S+FP Sbjct: 61 VIEEGELLLPARIFTEMVRRLPPTSLSLQSLQDNT----VEIAYQQSKVQLNSIDASQFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +SF +A + LK+ + + A +++R NG+ + + + + VATD H Sbjct: 117 LLPPVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTH 176 Query: 180 RLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV + + + +VP +A+ E+ R+L +D VK+++ ES+I+ E L++ Sbjct: 177 RLAVYHGQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLY 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS----SVRIQAVKLSLSSDK 294 RL++G+FP+YQ VIP + + + +L V+R ++++ R + L + Sbjct: 237 TRLLNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKS 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSS 353 L +T + ++G E + P+++ N +YLLE + V+D E V+ L + Sbjct: 297 LKITSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETL------RVIDTENVILELLAP 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V +R ++ N F +++P+RI Sbjct: 351 LKPVVVRPAGQE---------NYFCLILPVRI 373 >gi|282848765|ref|ZP_06258160.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745] gi|282581551|gb|EFB86939.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745] Length = 370 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL G I +K E G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ + ++ S + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVVVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|294794202|ref|ZP_06759338.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44] gi|294454532|gb|EFG22905.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44] Length = 370 Score = 134 bits (338), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL G I +K E G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ + ++ S + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVILS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|307265437|ref|ZP_07546993.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919551|gb|EFN49769.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 370 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 96/345 (27%), Positives = 177/345 (51%), Gaps = 10/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A G ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V A + ++VRKL +G E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEG---EVKVESDSQNTVNVVCDSINFTIAGSDAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+L ++LK+L+ +T F +A E+ R L G+ F + + ++K AVA DG R Sbjct: 118 IPQVSRENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGFR 175 Query: 181 LAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ +E + + SI++P K + EI RIL K++ +++ + +++ IE+ Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILEDKETEIEIYHTANQVLFQIENTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ V L ++++R S+++ + +K + DK Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKFI 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + GK +E + V ++I FN +YLL+ + I +E+ Sbjct: 295 TVSSNSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEI 339 >gi|253681213|ref|ZP_04862011.1| DNA polymerase III, beta subunit [Clostridium botulinum D str. 1873] gi|253562451|gb|EES91902.1| DNA polymerase III, beta subunit [Clostridium botulinum D str. 1873] Length = 367 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 108/388 (27%), Positives = 188/388 (48%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + + A + L + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHISAKNNELTLIGSDIDLSIETKIDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI V + + +I+RKL + EN + I S F L EFP+ Sbjct: 61 VKEEGSIVVDSRIFGEIIRKLPNSLININTTEN---NSIEIICEKSKFDLIHMDSDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + VLKN+++ T FA+A +E R L GI F + D K+ VA DG+R Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEV--RDKKVNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ I + S ++P K E+ +ILS + +V ++ + + I N+ + R Sbjct: 176 LALKSNMIHNE--NTISAVIPGKTFSEVSKILSDDEKNVNITFTPNHILFNLGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNC--TNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 L++GEF Y ++IP + +L+VN L ++R S+M VK + +D L + Sbjct: 234 LLEGEFIKYNSIIP--EEYKLKVNAKRAELLNCIERASLMGKEGNTNLVKFDIKNDNLII 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T N +G+ E +N+ ++I FN KYL++++ + DDE++ DSS S Sbjct: 292 T-SNSQLGRVREELNIILQGDELEIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPC 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K+ ++ Y+++P+R+ Sbjct: 346 VIKSKENNTYT---------YLVLPVRL 364 >gi|313893531|ref|ZP_07827101.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441974|gb|EFR60396.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 370 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL G I +K E G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ + ++ + + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNSEIGMAKEDIAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|212637851|ref|YP_002314371.1| DNA polymerase III subunit beta [Anoxybacillus flavithermus WK1] gi|212559331|gb|ACJ32386.1| DNA polymerase sliding clamp subunit [Anoxybacillus flavithermus WK1] Length = 378 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R ++ + + + + TIP+ + + A++ + + S +I I IPA Sbjct: 1 MKVIIDREHLVRSVQDVMKAVSSRTTIPILTGIKIVASEQGVTLTGSDSDISIESFIPAE 60 Query: 61 ------VDVC--GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 VDV GS+ + A +IVRKL ++ QI K+ + T I G + F+L Sbjct: 61 EKDRIIVDVIKQGSVVLQARFFSEIVRKLPKETVQIEV-KDQFVTT---IRSGKAEFHLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + + F++ + +LK+++ +T FA++T E R L G+ + I E+ +L Sbjct: 117 GLDPEEYPRLPQIQEENMFKVPADLLKHVIRQTVFAVSTSETRPILTGVNWRI--ENNEL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + + + +I++P K++ E+ +IL + V + ++E++I Sbjct: 175 TCIATDSHRLAMRKAKVETESEAYFNIVIPGKSLNELNKILEESNELVHIVVTENQILFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + L RL+DG +P+ +IP + ++ V QA+DR S+++ R V+LS Sbjct: 235 TKHLLFFSRLLDGNYPDTSRLIPTDSQTDVIVKTKEFLQAIDRASLLAREGRNNVVRLST 294 Query: 291 SSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 +DK+ ++ ++P++GK +E + E + I F+ KY+++ + + E+ Sbjct: 295 LADKIVEISSNSPEIGKVVEEVQCEQVEGEELKISFSAKYMMDALKALEGTEI 347 >gi|257871390|ref|ZP_05651043.1| DNA polymerase subunit III [Enterococcus gallinarum EG2] gi|257805554|gb|EEV34376.1| DNA polymerase subunit III [Enterococcus gallinarum EG2] Length = 376 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 92/340 (27%), Positives = 174/340 (51%), Gaps = 19/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55 MK+T+ R++ ++ L R I K TIP+ V L D L + S +I I Sbjct: 1 MKVTLNRTEFMQELQTVQRAISSKTTIPILTGVKLVLTDKGLTLTGSNADISIETFLSVE 60 Query: 56 --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + ++ G+I + A +I+R+L D EN +V I+ G +NF + Sbjct: 61 KEKVQMKIEQTGAIVLQARFFSEIIRRLPDNTVTLEVIEN---NQVAITSGKANFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E E+ + +L +V T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADSYPHLPVVESQDRIEVPAHILNKIVNETVFAVSQHESRPILTGVHFVL--ENKKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + A +I++P K++ E+ R L+ ++ ++++S+ ++++ Sbjct: 176 VATDSHRLSQRVIPLESGEANF-NIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTN 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + L A++R S++S R V+LS++ Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLSAIERASLLSHEGRNNIVRLSINE 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC---PMDICFNYKYL 329 D + + ++P++GK E ++ Y + P++I FN Y+ Sbjct: 295 DSVILYGNSPEIGKVEEDLS--YEQVSGEPLEISFNPDYM 332 >gi|27466920|ref|NP_763557.1| DNA polymerase III subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57865930|ref|YP_190093.1| DNA polymerase III subunit beta [Staphylococcus epidermidis RP62A] gi|251811365|ref|ZP_04825838.1| DNA polymerase III subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282874722|ref|ZP_06283601.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135] gi|293367579|ref|ZP_06614232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|38604836|sp|Q8CQK6|DPO3B_STAES RecName: Full=DNA polymerase III subunit beta gi|81672839|sp|Q5HK00|DPO3B_STAEQ RecName: Full=DNA polymerase III subunit beta gi|27314462|gb|AAO03599.1|AE016744_2 DNA polymerase III beta subunit [Staphylococcus epidermidis ATCC 12228] gi|57636588|gb|AAW53376.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis RP62A] gi|251805114|gb|EES57771.1| DNA polymerase III subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281296438|gb|EFA88953.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135] gi|291318292|gb|EFE58685.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329724168|gb|EGG60686.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU144] gi|329736046|gb|EGG72319.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU045] Length = 377 Score = 134 bits (337), Expect = 2e-29, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 190/376 (50%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T I+ G S F L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E +N E + I FN KY+++ + I +DEV EV F Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 352 -GTMKPFILKPKDDDS 366 >gi|28209865|ref|NP_780809.1| DNA polymerase III subunit beta [Clostridium tetani E88] gi|28202300|gb|AAO34746.1| DNA polymerase III, beta chain [Clostridium tetani E88] Length = 367 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S + E + A + + K+T+P+ + ++A + L + S ++ I + A Sbjct: 1 MKIFCNKSILQESISIAQKAVTGKSTMPILQGIFIKAENNSLTLIGSDIDLSIETIMDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI + + + +I+RKL + K+N + + I S F L EFP Sbjct: 61 VIEEGSIVIDSKIFGEIIRKLPNDVIEITSKDNNI---IEIKCQKSKFNLVHMSADEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + ++LKN+V T FA + EE R L G+ F I ++ L L VA DG+R Sbjct: 118 LPKINENIIFSIPEALLKNMVRGTIFATSQEETRPILTGLLFEIKDKILNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV I ++ S ++P K + E+ +ILS D V ++ + + I +I + R Sbjct: 176 LAVKSEIIDSE--NSISAVIPGKTLNEVSKILSENDEKVNITFTPNHILFSIGKTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTV 299 L++G+F NY+++IP + ++ + ++R S+M +KL+++ D + +T Sbjct: 234 LLEGDFINYKSIIPKEYNLKVIAKRIKFLECIERASLMGKDGNTSLIKLNITDDSIVIT- 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E M + ++I FN KYL++++ + +DE++ L SS S I Sbjct: 293 SNSQLGMVREEMGIILQGEDLEIAFNSKYLIDVLKVME-----EDEIILELSSSISPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ + + Y+++P+R+ Sbjct: 348 KNKEAN---------DCTYLVLPVRL 364 >gi|238018222|ref|ZP_04598648.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748] gi|237864693|gb|EEP65983.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748] Length = 370 Score = 134 bits (337), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 95/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL G I +K E G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ + ++ + + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|146300470|ref|YP_001195061.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101] gi|14531036|gb|AAK63183.1| DNA polymerase III beta subunit DnaN [Flavobacterium johnsoniae UW101] gi|146154888|gb|ABQ05742.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101] Length = 372 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 175/344 (50%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L + AS E ++ + Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLSID 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A LL +I++ + ++F E+ V IS + L EFP Sbjct: 61 STSKGSVAVPAKLLLEILKTFPE-QPLTFTVED--NNTVEISSNSGKYALAYAAGEEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + + VL V +T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 SVNLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L A D+ A +++ I+P+K + + IL S D+ VK+ ++S + ++ + Sbjct: 176 LVKYARADVKA--SQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++PNY+ VIP N +L ++ + +V RV+I S+ ++L ++ +L ++ Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLLIDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSA 293 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D KA E + Y + I FN ++L+E++ N+ SD ++ Sbjct: 294 EDIDYSNKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIM 337 >gi|289551835|ref|YP_003472739.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis HKU09-01] gi|289181366|gb|ADC88611.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis HKU09-01] Length = 377 Score = 134 bits (336), Expect = 3e-29, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GNEVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S + + + +++++ + Sbjct: 177 CTATDSHRLAVRKLQLEDN-SENKNVIIPGKALAELNKIMSDSEEDIDIFFAQNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 ++ + RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 +D + ++ +P++G E +N E + I FN KY+++ + I +DEV Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAIDNDEV 346 >gi|315659994|ref|ZP_07912852.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus lugdunensis M23590] gi|315494895|gb|EFU83232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus lugdunensis M23590] Length = 377 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GNEVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S + + + +++++ + Sbjct: 177 CTATDSHRLAVRKLQLEDN-SENKNVIIPGKALSELNKIMSDSEEDIDIFFAQNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 ++ + RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 +D + ++ +P++G E +N E + I FN KY+++ + I +DEV Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAIDNDEV 346 >gi|315187336|gb|EFU21092.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6578] Length = 367 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ER ++++ + A II KN + + +VLL A D L I+A+ ++ + P Sbjct: 1 MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSKLTIRATDLKVGFETSSPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV L I+R L GA + F + + NF L++ ++P Sbjct: 61 VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 Y F + S L ++ T FA++ +E RY++NG+F E+ L + VATDG R Sbjct: 120 MPLHGDSY-FSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E ++ + +I+P K + + R L + V ++ E + L + +S Sbjct: 177 LAYIEKEVDGGVPDFNGVIIPPKIL-HLARKLLPGEGMVDFAIGEKHVFLRYGDVYLSSN 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G FP Y+ VIP + +A+ RVS++ + + V L++ L + + Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVRSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E + Y + + I NY YLLE + ++ ++V E+ F S +V Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVMTEEQV---EIAFTEPSRAITV--- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + F+++MPM++ Sbjct: 350 --------RPVPEREFFHIVMPMQL 366 >gi|89898369|ref|YP_515479.1| DNA polymerase III subunit beta [Chlamydophila felis Fe/C-56] gi|89331741|dbj|BAE81334.1| DNA polymerase III beta chain [Chlamydophila felis Fe/C-56] Length = 366 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 107/386 (27%), Positives = 192/386 (49%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I D + V TDG Sbjct: 117 MLPDIQNSIRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTI--ADGMVTVVGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + +I + IVP KAV E+++ L S+DS + L +++I + + + Sbjct: 175 RLAKTDTEISLDKSFAGDYIVPIKAVEEMIK-LCSEDSEATIFLDQAKIAVECGNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI + +L ++ L + +V++ ++ +VK + + +L +T Sbjct: 234 KLLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V RL S+S + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G DS + +V+MPMR+ Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363 >gi|108802858|ref|YP_642795.1| DNA polymerase III subunit beta [Rubrobacter xylanophilus DSM 9941] gi|108764101|gb|ABG02983.1| DNA polymerase III, beta subunit [Rubrobacter xylanophilus DSM 9941] Length = 375 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 105/374 (28%), Positives = 188/374 (50%), Gaps = 20/374 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 L R + ++ + V VLL+A +G LE+ A+ E+ I PA V+ G + + A + Sbjct: 14 LALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTRSPAEVEEAGRLVIPARI 73 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 DIVR L +G IS + E G V S ++ + ++++ +FP+ E SF ++ Sbjct: 74 FSDIVRSLPEG-MISIEHDVESGAAVLRSR-ENEYRIRAYAAEDFPALPEFSEEGSFRVS 131 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 L V++ + + +E R L GI I+ ED +L V TD +RL++ E ++ Sbjct: 132 GEALVETVQKVSSSYSRDETRPVLTGIL--ISFEDSRLRMVTTDSYRLSIKETELATTFE 189 Query: 194 KMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 I+P +A+ E+ RI S D ++V LSE++ + + + +LI G FP Y+ + Sbjct: 190 GKREAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGTKLIAGNFPEYRRL 249 Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIES 310 +P + ++E+ VN + ++ RV++ + + V +SL S + + V + ++G+A E Sbjct: 250 LPAAFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEVVVRSGEVGEAHER 309 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370 + +E I FN YLL D IS+ V ++VVF+ + I N Sbjct: 310 IPA-SSEDDFTISFNPGYLL---DGISA--VDTEKVVFKFNEPLKPGLI-------VPNG 356 Query: 371 DNKVNAFYVLMPMR 384 + + + Y++MPMR Sbjct: 357 EEEPDFRYLIMPMR 370 >gi|321313669|ref|YP_004205956.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5] gi|291482371|dbj|BAI83446.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. natto BEST195] gi|320019943|gb|ADV94929.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5] Length = 378 Score = 133 bits (335), Expect = 4e-29, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 186/352 (52%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL A + +N+ T I G + F L Sbjct: 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + + +L LC Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSEL-LC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 177 T-ATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++ + ++ ++P++GK +E++ E ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAIAADQIEGEELNISFSPKYMLDALKVLEGAEI 347 >gi|223043416|ref|ZP_03613462.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14] gi|222443205|gb|EEE49304.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14] Length = 377 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 98/376 (26%), Positives = 187/376 (49%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVEISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQL-EDTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + E + I FN KY+++ + I +DEV EV F Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 352 -GTMKPFILKPKDDDS 366 >gi|297543500|ref|YP_003675802.1| DNA polymerase III subunit beta [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841275|gb|ADH59791.1| DNA polymerase III, beta subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 370 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 93/346 (26%), Positives = 177/346 (51%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKITALKDQVKFSGTDLDIGIECQIPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G I V A + ++VRKL ++ +I E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEEDVKI----ESDSQNTVNVICDSINFTIAGSDAVEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+L ++LK+L+++T F +A E+ R L G+ F + ++K AVA DG Sbjct: 117 EIPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGF 174 Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 R+A+ +E + + SI++P K + EI +IL +++ + + + +++ IE+ Sbjct: 175 RMAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G F NY V+P E+ V L ++++R S+++ + +K + DK Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + GK +E + V ++I FN +YLL+ + I +E+ Sbjct: 294 ITVSSNSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAIDEEEI 339 >gi|315640355|ref|ZP_07895471.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus DSM 15952] gi|315483891|gb|EFU74371.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus DSM 15952] Length = 376 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/340 (27%), Positives = 174/340 (51%), Gaps = 19/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ R ++ L R I K TIP+ V +Q + L + S +I I + A+ Sbjct: 1 MKVTLHRGTFIQELQTVQRAISSKTTIPILTGVKIQLSHQGLTLTGSNADISIETFLSAT 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +IVR+L + +F E +V I+ G ++F + Sbjct: 61 NEKANMQIEQTGAIVLQARFFGEIVRRLPEE---TFTLEVIENNQVLITSGKASFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + VL L+ T FA++ E R L G+ H+ ++ +L A Sbjct: 118 DADNYPHLPVVETNQQLTIPVEVLNQLISETVFAVSQHESRPILTGV--HMTLKNNQLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + +Q ++ I++P K++ E+ R L+ D + +S+ E+++ E Sbjct: 176 VATDSHRLSQRTIPLESQSDQI-DIVIPGKSLTELSRSLAETDEQIDISIMENQVLFETE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + L A++R S++S R VKLS++ Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPTSFNTEIEFSVPALLAAIERASLLSHEGRNNIVKLSITD 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC---PMDICFNYKYL 329 + + ++P++GK ES++ Y++ P+DI FN Y+ Sbjct: 295 QDVILYGNSPEVGKVEESLS--YDKVSGDPLDISFNPDYM 332 >gi|167629173|ref|YP_001679672.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum Ice1] gi|167591913|gb|ABZ83661.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum Ice1] Length = 371 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 171/344 (49%), Gaps = 7/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R ++LE + R + K T PV + L+A D L + A+ E+ I IP Sbjct: 1 MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIPVR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS V+A + ++ R+L +G I+F + + + + S L + EFP Sbjct: 61 TKRTGSTVVNARIFNEMARRLPEGP-ITFCVNGD-NPALKVRYHGSELTLNTMNPQEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + K + FA +++E R + G+ + I E+++ VATD HR Sbjct: 119 LPAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRW--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ V P +I+ K + ++ R+L ++ ++++L+ S+ L + L + + Sbjct: 177 LALLSGQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVIL 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCM 297 R+I+G++P YQ VIP + L + L +AVDR S+ S + + +KLS + L + Sbjct: 237 RIIEGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++P++G E + V + P+ I FN++YL +++ + +++V Sbjct: 297 RSNSPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDTEQV 340 >gi|313675527|ref|YP_004053523.1| DNA polymerase iii, beta subunit [Marivirga tractuosa DSM 4126] gi|312942225|gb|ADR21415.1| DNA polymerase III, beta subunit [Marivirga tractuosa DSM 4126] Length = 374 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 94/343 (27%), Positives = 173/343 (50%), Gaps = 8/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ + +I +P+ + L + DGLL I AS + + I Sbjct: 1 MKFLVSSSALLKQISSINGVISTNPMVPILENFLFEIQDGLLTITASDLQTSMITEIDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSI V A +L D ++ L + Q F +E + IS + + L ++FP Sbjct: 61 SSENGSIAVPARILMDTLKNLPE--QPVTFSIDEETYSIEISSDNGRYKLAGENATDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E E + ++++ VL + T +A + +E+R + G++ +E + VATDG+R Sbjct: 119 VQEVENPDTVDISADVLATAINHTIYATSNDELRPAMGGVYVKFDETNTTF--VATDGNR 176 Query: 181 L-AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L VD+ + II+PRKA+ + L +++ +V V + S + ++ + Sbjct: 177 LIRYRRVDVASDSGT--GIIIPRKALSLLKNSLPAENVNVAVEFNMSNAYFKFNNIKLIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL+D FP+Y+NVIP N+ +L +N ++ R+SI ++ V+L ++ +L + Sbjct: 235 RLVDERFPDYENVIPAENNIKLTINRQEFMSSLKRISIYANKTTHQVRLKINGSELQIFA 294 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D +A E M + ++I FN K+L+E+++N+ S EV Sbjct: 295 EDLDFSNEANEIMACEHQGDDIEIGFNAKFLVEMLNNLDSKEV 337 >gi|315925612|ref|ZP_07921822.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315621153|gb|EFV01124.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 369 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 89/342 (26%), Positives = 182/342 (53%), Gaps = 7/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++D++ L R + K T+P+ +L + D L + ++ EI I +IPA Sbjct: 1 MKFDCSKTDLISALSLVSRGVSNKTTMPILEGILFEVYDHRLFLTSTNLEISIQTSIPAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + ++ ++++VRKL G + F E ++ ++ S F ++ EFP Sbjct: 61 VEQDGELILQSNFIFELVRKLS-GEDVFF--EQMAQHQLKMTCECSTFTIKGMASDEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + YSF + ++ LK ++ T FA+A +E L G+ I ++ +L +A DG+R Sbjct: 118 FPKVIDDYSFTVDAAALKAMIHGTIFAVAIKENIPVLTGLKLEIEQD--QLTMIALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I + SIIVP K++ E+ ++LS V+V+LS+++I + + R Sbjct: 176 LALRRGALSTPINEAVSIIVPGKSMMELDKLLSGVSGDVQVNLSKAQIFFTMGDTQFTSR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L++GEF NY+++IP + E+ ++ L + +R ++++ + +K++ D+L ++ Sbjct: 236 LLEGEFINYKHIIPKDKNTEVVIDKKLLLDSTERAALLAREGKNNLIKMAFGIDELTLS- 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N ++G E + + + I FN K++++ + I +++ Sbjct: 295 SNAEIGDVHEVIPIQKTGDDLKIAFNSKFIIDALRAIDQEQI 336 >gi|300853234|ref|YP_003778218.1| DNA polymerase III subunit beta [Clostridium ljungdahlii DSM 13528] gi|300433349|gb|ADK13116.1| DNA polymerase III, beta chain [Clostridium ljungdahlii DSM 13528] Length = 367 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 191/388 (49%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++++ E + A + I K+++P+ +L+ +++ S ++ I I A Sbjct: 1 MNFICTKTELQEAISIAQKAITGKSSMPILNGLLITTCKNQIKLTGSDIDLSIETKINAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS+ V + L +I+RKL D IS + N + I S F L +FP Sbjct: 61 IKEEGSVVVDSRLFGEIIRKLPNDNINISTTENNS----IEIICQKSKFNLIHMNAEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 F + +LK++++ T FA A +E R L GI F I +D KL VA DG+ Sbjct: 117 EIPNINENIIFLIPQKILKDMIKSTIFAAAQDETRPILTGILFEI--KDKKLNLVALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + + + ++P K + E+ +IL D +V ++ + + I N+++ + Sbjct: 175 RLALKSEYLNTE--NIINAVIPEKTLSEVSKILEDNDKNVNITFTPNHILFNLDNTKIIS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF Y ++IP + ++ L ++R S+M+ +KL + + + +T Sbjct: 233 RLLEGEFIKYNSIIPDEFNLQVTAKREELLSCIERASLMAKDSNTNLIKLEIEENNMIIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSSV 357 N +G E +N+ + I FN KYL++++ +++D +E++ + SS S Sbjct: 293 -SNSQLGMVREELNILLQGDTLKIAFNSKYLIDVL------KIMDEEEIIMKFSSSVSPC 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ KDKD N Y+++P+R+ Sbjct: 346 VIKNKDKD---------NCTYLVLPVRL 364 >gi|29840207|ref|NP_829313.1| DNA polymerase III subunit beta [Chlamydophila caviae GPIC] gi|29834555|gb|AAP05191.1| DNA polymerase III, beta chain [Chlamydophila caviae GPIC] Length = 366 Score = 133 bits (334), Expect = 5e-29, Method: Compositional matrix adjust. Identities = 106/386 (27%), Positives = 193/386 (50%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNEVGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + L+ +++RT FA++ EE RY L G+ I + + V TDG Sbjct: 117 MLPDIQNAIRFTLPAEQLREMLQRTSFAVSREESRYVLTGVLLTI--ANGIVTVVGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + +I + + IVP KAV EI++ L S+DS + L +++I + + + Sbjct: 175 RLAKTDTEISLDKSFIGDYIVPIKAVEEIIK-LCSEDSEATIFLDQAKIAVECGNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI + +L ++ L + +V++ ++ +VK + + +L +T Sbjct: 234 KLLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V RL S+S + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G DS + +V+MPMR+ Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363 >gi|138893681|ref|YP_001124134.1| DNA polymerase III subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196249895|ref|ZP_03148591.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16] gi|134265194|gb|ABO65389.1| DNA polymerase III, beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196210771|gb|EDY05534.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16] Length = 378 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 98/352 (27%), Positives = 177/352 (50%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I+++R + + + + + + TIP+ + L AN + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTANAHGMTLTGSDSDISIESFIPLE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VDV GSI + A +IV+KL Q + E E I G S F L Sbjct: 61 KEGRLLVDVKRPGSIVLQARFFAEIVKKL---PQQTIEIETEDNFLTVIRSGHSEFRLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK L+ +T FA++T E R L G+ + + E+ +L Sbjct: 118 LNAEEYPRLPQIEEENVFQIPADLLKTLIRQTVFAVSTSETRPILTGVNWKV--ENGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ +V I A+ A ++++P K++ E+ +IL ++ V + ++ +++ Sbjct: 176 CTATDSHRLAMRKVKIEAENAISYNVVIPGKSLNELSKILDDGNAPVSIVITANQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-SL 290 E L RL+DG +P +IP + + VN QA+DR S+++ R VKL +L Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTDSKTNMVVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 L ++ +P++GK E + E ++I F+ KY+++ + + +++ Sbjct: 296 PGGLLEISSISPEIGKVTEQLQTESIEGEELNISFSAKYMMDALRALDGNDI 347 >gi|16077070|ref|NP_387883.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221307811|ref|ZP_03589658.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221312133|ref|ZP_03593938.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317066|ref|ZP_03598360.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221321329|ref|ZP_03602623.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. SMY] gi|118797|sp|P05649|DPO3B_BACSU RecName: Full=DNA polymerase III subunit beta gi|40015|emb|CAA26218.1| unnamed protein product [Bacillus subtilis] gi|467392|dbj|BAA05238.1| beta subunit of DNA polymerase III [Bacillus subtilis] gi|2632269|emb|CAB11778.1| DNA polymerase III (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 378 Score = 133 bits (334), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 186/352 (52%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL A + +N+ T I G + F L Sbjct: 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + + +L LC Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSEL-LC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 177 T-ATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++ + ++ ++P++GK +E++ E ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEI 347 >gi|154492231|ref|ZP_02031857.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC 43184] gi|154087456|gb|EDN86501.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC 43184] Length = 374 Score = 132 bits (333), Expect = 6e-29, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 173/349 (49%), Gaps = 16/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + +L L ++I KN++P+ L L I AS E + S Sbjct: 1 MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLV----TS 56 Query: 61 VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 VDV G VSA +L D +++L + ++ L ++ +G NF Q Sbjct: 57 VDVMNAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK--G 114 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P K E S + + +L N + R+ FA A +E+R +NGI+F I+ +DL V Sbjct: 115 DTYPQQKPLNENAISIMMDAQMLLNGISRSLFATADDELRPVMNGIYFDIHTDDLTF--V 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+DGH+L V ++ + + S I+P+K + +LS + V + ++ ++N + Sbjct: 173 ASDGHKL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEGEMVSIKFDDNNAYINCAN 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 M RLI+G +PNY +VIP N ++ ++ + A+ RVS+ S+ VKL L ++ Sbjct: 232 FEMVCRLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLQLKENE 291 Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ + D + E V ++ + I F YL+EI+ NI+S+EV+ Sbjct: 292 MLVSAQDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINSEEVI 340 >gi|333030103|ref|ZP_08458164.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011] gi|332740700|gb|EGJ71182.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011] Length = 374 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 102/350 (29%), Positives = 171/350 (48%), Gaps = 18/350 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L Q +G+L + S E + S Sbjct: 1 MKFIVSSAALYSHLQAVSRVINSKNALPILDCFLFQLENGVLSVTVSDSET----TMETS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 +DV G I ++A L D ++++ + Q F + EV +++ + + L Sbjct: 57 IDVIECVTEGKIAIAAKTLLDALKEIPE--QPLTFSVDSSTLEVTVTYQNGQYSLMGQNA 114 Query: 116 SEFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P + E V F ++ L + RT +A A +E+R +NG++F I ED+ + Sbjct: 115 DEYPQSAALNNESV-KFTMSVDTLLAGINRTVYATADDELRPVMNGVYFDITTEDITM-- 171 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VA+DGH+L +V + A+ + I+P+K + IL + V++S E + Sbjct: 172 VASDGHKLVRCQV-LDAKGNDRAAFILPKKPANLLKNILPKEQGEVEISFDERNAIFALG 230 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + M RLI+G +PNY +VIP N ++ V+ + A+ RV+I SS VKL L Sbjct: 231 NYHMICRLIEGRYPNYNSVIPKDNPFKVTVDRVSFIGALRRVAIFSSQASSLVKLRLKDS 290 Query: 294 KLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ + D A E++ Y M I F +L++I+ NISSDEVV Sbjct: 291 SMNISAQDIDFSTSAEENLVCQYTGTDMSIGFKSTFLIDILSNISSDEVV 340 >gi|88697476|gb|ABD48432.1| DnaN [Morganella psychrotolerans] gi|88697478|gb|ABD48433.1| DnaN [Morganella psychrotolerans] gi|88697492|gb|ABD48440.1| DnaN [Morganella psychrotolerans] gi|88697494|gb|ABD48441.1| DnaN [Morganella psychrotolerans] gi|88697496|gb|ABD48442.1| DnaN [Morganella psychrotolerans] gi|88697498|gb|ABD48443.1| DnaN [Morganella psychrotolerans] gi|88697500|gb|ABD48444.1| DnaN [Morganella psychrotolerans] gi|88697502|gb|ABD48445.1| DnaN [Morganella psychrotolerans] gi|88697504|gb|ABD48446.1| DnaN [Morganella psychrotolerans] gi|88697506|gb|ABD48447.1| DnaN [Morganella psychrotolerans] gi|88697510|gb|ABD48449.1| DnaN [Morganella psychrotolerans] gi|88697512|gb|ABD48450.1| DnaN [Morganella psychrotolerans] Length = 193 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 9/200 (4%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ +P G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVPLVQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141 DGAQIS EL G + + G S F L + P S+FP+ + + +F L + LK L+ Sbjct: 61 DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLI 116 Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201 E T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI + S+IVP Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPDH-SVIVP 173 Query: 202 RKAVGEILRILSSKDSSVKV 221 RK V E++R+L ++ +K+ Sbjct: 174 RKGVIELMRLLDGGETLLKL 193 >gi|295698377|ref|YP_003603032.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola USDA] gi|291156994|gb|ADD79439.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola USDA] Length = 367 Score = 132 bits (333), Expect = 7e-29, Method: Compositional matrix adjust. Identities = 100/360 (27%), Positives = 182/360 (50%), Gaps = 25/360 (6%) Query: 30 SC-HVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQI 87 SC +LL D +L + EI I + D GSI VS ++I Q ++I Sbjct: 29 SCDKILLSVKDNILSLTYLDSEIGIIAKVKLMYSDQDGSIVVSIRKFFNICLNSQPKSKI 88 Query: 88 SFF--KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTH 145 FF K+N + I +G S F + F E +FP +F+++ K L+ T Sbjct: 89 YFFFNKKNLI-----IFYGRSKFSILVFSEFDFPKLVIWNANSNFKISQMEWKRLILSTK 143 Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 +M ++ RYYLN + E +K+ V+TDGHRL+ + V I S+++ R+++ Sbjct: 144 ISMGFQDARYYLNSMLLEKRENYIKM--VSTDGHRLSASYVKIQFGSQNDFSVLLSRRSI 201 Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 E L++L + D ++V + E ++I ++S +LI+G FPNY++V+ + K + VN Sbjct: 202 VECLKLLENNDDFLQVFIGEKDFRMDINNISFHAKLINGNFPNYESVLSRNKKKIVTVNR 261 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 ++ R I+ + + Q ++ + +T N D G+ ES++ Y + P+ I N Sbjct: 262 ILFKEMCSRALILLNDKNQNACFVFENNLIRITTKNFDQGEYEESIDSQYQDSPVKIYLN 321 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 KY+L++++ I + V +++ ++S +IR + ++ +FYV+MP+RI Sbjct: 322 IKYVLDVLNIIQCENV-------KIEITDSISYIRIQGISNR-------LSFYVIMPIRI 367 >gi|283767792|ref|ZP_06340707.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus H19] gi|283461671|gb|EFC08755.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus H19] Length = 377 Score = 132 bits (333), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 90/351 (25%), Positives = 180/351 (51%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 E+++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 ENVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|317968477|ref|ZP_07969867.1| DNA polymerase III subunit beta [Synechococcus sp. CB0205] Length = 376 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 196/391 (50%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKLVCSQAELNSSLQLVSRAVAARPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV G+IT+ A L +IV ++ + I+ E E +V ++ ++ ++ P +F Sbjct: 61 ASVATSGAITLPARLFGEIVSRMPADSPITLSCE-EGSEQVELTSLSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + +L VL + T FA + +E + L G+ +++ L+ CA ATDG Sbjct: 120 PELPLAQAGTPIKLDPEVLIKGLRATLFASSGDEAKQLLTGVHLGLDQNGLE-CA-ATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236 HRLAV + + + VP +++ E+ R+LSS+ S VSL ++ Sbjct: 178 HRLAVLRLQNASSSEAELDVTVPARSLRELERLLSSRGGSDAVSLFCDRGQVVFQWADQV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS--LSSDK 294 ++ R +DG +PNY+ +IP S ++L+V+ L +A++RV++++ VKL+ ++ + Sbjct: 238 LTSRSLDGTYPNYRQLIPESFGRQLQVDRKGLLRALERVAVLADQHNNVVKLTSDPAAGQ 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D D+G E++ + + I FN +Y+LE + + ++V + ++ Sbjct: 298 LSISADAQDVGSGSEAIGAQVSGDAIQIAFNVRYVLEGLKAMGC-----EQVQLQCNAPT 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V + +D S Y++MP++I Sbjct: 353 TPVVLAPQDDSSFT---------YLVMPVQI 374 >gi|228473010|ref|ZP_04057767.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275592|gb|EEK14369.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 384 Score = 132 bits (332), Expect = 8e-29, Method: Compositional matrix adjust. Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +I NT+P+ + L + ++ L + AS E I G I Sbjct: 12 MRFIVSSSYLLKKLQIIGGVINSNNTMPILENFLFELSENKLVVSASDLETTIKGVIEVE 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 SI V +L D ++ + A +N ++I + + L +EFPS Sbjct: 72 STDSISIAVPYKILIDTLKTFSEQALTFIINDN---NTIDIVSNNGKYTLAYLDSNEFPS 128 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L +L ++ T FA +++R +NG+FF+ EE L A TD H+ Sbjct: 129 VVEIENASQVTLMGDILATAIQSTFFATGNDDLRPIMNGVFFNFTEEGLIFAA--TDAHK 186 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L E DI + + + ++P+K + + IL+ ++ V + +ES + + L Sbjct: 187 LVKYERQDIKSD--QPAAFVIPKKPLNLLKGILAGSETQVTIEYNESNAKFSFDQLDYVC 244 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG +PNY+ VIP N +L VN + + R+S +S +++ + + L + Sbjct: 245 RLIDGTYPNYEAVIPKENPNKLIVNRNLILNSTKRISNFASKATHQMRIKIVGNSLQIFA 304 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + +A E++ Y M+I FN K+ +E++ N+SSDE++ Sbjct: 305 EDIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSSDEIL 348 >gi|326335580|ref|ZP_08201767.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692346|gb|EGD34298.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 373 Score = 132 bits (332), Expect = 9e-29, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +I NT+P+ + L + + L + AS E I G I Sbjct: 1 MRFIVSSSYLLKKLQIIGGVINTNNTMPILENFLFELSGNKLVVSASDLETTIKGVIEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 SI V +L + ++ + A +N V+I + + L +EFP+ Sbjct: 61 SSDTVSIAVPYKILIETLKTFTEQALTFIINDN---NTVDIVSNNGKYTLAYLDSAEFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L +L ++ T FA +++R +NG+FF++ E+ L ATD H+ Sbjct: 118 IVEIENANHVSLMGDILATAIQSTLFATGNDDLRPIMNGVFFNLTED--ALIFAATDAHK 175 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L E DI ++ S ++P+K + + IL+ +S V + +ES + + L Sbjct: 176 LVKYERQDIKSEYPA--SFVIPKKPLNLLKGILAGSESEVTIEYNESNAKFSFDQLDYVC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG +PNY+ VIP N +L VN L + R+S +S +++ + + L + Sbjct: 234 RLIDGNYPNYEAVIPKENPNKLIVNRNLLMNSTKRISNFASKSTHQMRVKIVGNSLQIFA 293 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + +A E++ Y M+I FN K+ +E++ N+SSDEV+ Sbjct: 294 EDIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSSDEVL 337 >gi|296330038|ref|ZP_06872522.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672700|ref|YP_003864371.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii str. W23] gi|296153077|gb|EFG93942.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410943|gb|ADM36061.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii str. W23] Length = 378 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 92/352 (26%), Positives = 186/352 (52%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL A + +N+ T I G + F L Sbjct: 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + + +L LC Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSEL-LC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 177 T-ATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++ + ++ ++P++GK +E++ E ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAILADQIEGEELNISFSPKYMLDALKVLEGAEI 347 >gi|238855507|ref|ZP_04645812.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3] gi|260665211|ref|ZP_05866060.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|282931533|ref|ZP_06337032.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] gi|313472765|ref|ZP_07813253.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153] gi|238831873|gb|EEQ24205.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3] gi|239529254|gb|EEQ68255.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153] gi|260560948|gb|EEX26923.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|281304340|gb|EFA96443.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] Length = 376 Score = 132 bits (332), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 172/337 (51%), Gaps = 13/337 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ L+ L + R I + TIP+ + + ++ L + S +I I IP S Sbjct: 1 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEDLILTGSDTDISIEIKIPVS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G +F E + G + IS +S F + + Sbjct: 61 EDLKVESTGSIVLPARFFNEIIKKLP-GKDFNF--EVKEGLQTQISSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +FE++ + ++ T+FA++T+E R L G+ F N+ +K AVAT Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ +D+ +I+P K++ E+ RI+ +D V V+ ++++ I ++S Sbjct: 176 DSHRLSQRVIDLENGPQVETDLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNIS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL++G +P+ ++P ++ + +L QA+DRVS+++ R VKL+L + Sbjct: 236 FYSRLLEGTYPDTDRLLPTNSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTQNG 295 Query: 296 CMTV--DNPDMGKAIES-MNVYYNECPMDICFNYKYL 329 + D+P++G E + ++I FN YL Sbjct: 296 VAQLEGDSPEIGTVEEKPLAKQLTGQNLEISFNPDYL 332 >gi|325954048|ref|YP_004237708.1| DNA polymerase III subunit beta [Weeksella virosa DSM 16922] gi|323436666|gb|ADX67130.1| DNA polymerase III, beta subunit [Weeksella virosa DSM 16922] Length = 372 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 7/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ + +I NT+P+ + L + L I S E I+ Sbjct: 1 MKFIVSSNTLLKNVNTIGGVINNNNTLPILDNFLFELKGNELTITGSDLETTISTTFEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I V + +L D ++ ++F +++ G + I N+ L SE+P Sbjct: 61 SEDEGKIAVPSKILTDTLKTFP-AQPLTFIQKD--GNTLEIVSEQGNYQLAYEDASEYPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T + E + +L +SV+ + +T FA +E+R + G+ F + VATD HR Sbjct: 118 TPDVEEAHLTKLPASVISEAILKTIFATGNDELRPIMTGVLFQAQPDVFNF--VATDAHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V Q + I+P+K + + IL + V + +++ +++ ++ R Sbjct: 176 L-VKYSRTGLQSVEAAEYIMPKKPLNLLKNILGGNNDEVTIEYNQTNTRFTFQNIVLTCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY VIP N L +N ++ RV+I S+ ++L L + L ++ + Sbjct: 235 LIDGKYPNYDAVIPKENPNVLTINRNLFLSSLKRVAIFSNKTTNQIRLKLIGNSLTISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D KA E + YN + I FN K+L+E+++N+ SD++ Sbjct: 295 DVDFANKAEERLPCEYNGTDLQIGFNSKFLIEMLNNLQSDDIT 337 >gi|320162114|ref|YP_004175339.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1] gi|319995968|dbj|BAJ64739.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1] Length = 378 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 179/348 (51%), Gaps = 11/348 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + + LG R + ++T+PV +VLL ++G L + A+ E+ I+ + A Sbjct: 6 MKVTVSQQHLAHGLGLVSRAVAPRSTLPVLGNVLLATDEGRLRLAATNLELGISCWLGAQ 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A L D++ L + ++ N +++ G S+ L+ +EFP Sbjct: 66 IQEEGSITVPARLFADLIGTLPN--EMIHLAVNPRSMALSVKCGSSSTELKGIDAAEFPP 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L + K ++++ FA +TEE R L G+ I+ +++ L A TDG R Sbjct: 124 VPAVDSDHGVLLPVADFKEMIQQVAFAASTEEARPVLQGVQMVISGDEISLAA--TDGFR 181 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 ++V ++ + +A+ S+I+P +A+ E+ RI + + V ++ +E+L ++ + Sbjct: 182 ISVRQMRLSEPVAQPISVIIPARALQELARIAQEGEVRLIVPPGRGQVVFQMENLQLTSQ 241 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----VRIQAVKLSLSSDKL 295 LIDG FP+Y+ ++P S V+ L +AV + I++ VR+ K ++ Sbjct: 242 LIDGNFPDYKVILPRSYKTHTIVSTEALLKAVKQAEIIARMGNGVVRLHLQKFDDRPGQI 301 Query: 296 CMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 ++ + + G A ES+ E P + I FN K+L E ++ I + +V Sbjct: 302 EISAQSEETG-ANESLVDANIEGPTLAIAFNVKFLREALEVIKTPNLV 348 >gi|255533120|ref|YP_003093492.1| DNA polymerase III subunit beta [Pedobacter heparinus DSM 2366] gi|255346104|gb|ACU05430.1| DNA polymerase III, beta subunit [Pedobacter heparinus DSM 2366] Length = 374 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 173/343 (50%), Gaps = 6/343 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + DG L I A+ + +T ++P Sbjct: 1 MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGNLTISATDLQTSMTTSLPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V A +L D ++ L D Q F ++ + IS GD + L +FP Sbjct: 61 SKEGGKVAVPARILLDTLKTLPD--QPISFNIDDSTFSIEISAGDGKYKLSGENGDDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L +SVL + +T FA++++E+R + G+F ++++ + VATD H+ Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSSDELRPAMTGVFCQLSDQHITF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + ++ K S I+P+KA+ + L S D +V V + + E++++ R Sbjct: 177 L-VRYRRMDSKADKSSSFILPKKALTLLKAALPSTDINVSVDYNATSAFFKFENINLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ + RV I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D +A E ++ Y ++I FN K+L+E++ N+S +EV Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNAKFLIEMLSNLSGEEVT 338 >gi|311032257|ref|ZP_07710347.1| DNA polymerase III subunit beta [Bacillus sp. m3-13] Length = 378 Score = 132 bits (331), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 91/355 (25%), Positives = 185/355 (52%), Gaps = 20/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R +++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MKFIIQRDKLVQSVQDVLKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPCE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GS+ + A +I++KL D +I +N+ T I G S F L Sbjct: 61 EDGSENVEVKTAGSVVLQARFFSEIIKKLPMDTVEIEV--QNQYVT--TIRSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E F + + +LKN++ +T FA++T E R L G+ + + E+ +L Sbjct: 117 GQDAAEYPHLPQVEEQNVFRVPTDLLKNIIRQTVFAVSTSETRPILTGVNWKL--ENHEL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + + A+ ++++P K++ E+ +IL + + + ++E+++ Sbjct: 175 ICIATDSHRLALRKAKVEAENDITCNVVIPGKSLNELNKILDDTNELLDIVVTENQVLFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 +++ RL+DG +P+ +IP + ++ V QA+DR S+++ R VKL + Sbjct: 235 AKNILFFSRLLDGNYPDTSRLIPAESKTDITVTTKEFLQAIDRASLLAREGRNNVVKLAT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 L SD L ++ ++P++GK +E + N E + I F+ KY+++ + + +E++ Sbjct: 295 LESDTLEVSSNSPEVGKVVEQVQSNSIDGE-ELKISFSAKYMMDALKALEGNEIL 348 >gi|116332683|ref|YP_794210.1| DNA polymerase sliding clamp subunit [Lactobacillus brevis ATCC 367] gi|116098030|gb|ABJ63179.1| DNA polymerase III, beta subunit [Lactobacillus brevis ATCC 367] Length = 379 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 95/340 (27%), Positives = 170/340 (50%), Gaps = 16/340 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ R+ ++ L + R I K TIP+ + + A+D L + S +I I I A Sbjct: 1 MKFTINRAAFIKELNNVSRAISSKTTIPILTGLKIVASDAGLLLTGSNADISIETLIRAD 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++D GSI ++A +IV++L + K+ G + I+ G + F + Sbjct: 61 NPDVGLTIDEPGSIVLTARFFSEIVKRLPEKEMTVEVKD---GFQTEITSGAAAFNINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + S L+ +V K L+ +T A++ +E R L GI F +N D + A Sbjct: 118 DANNYPHLPEIDAADSIVLSGAVFKELISQTVIAVSNQESRPILTGIHFVLN--DNQFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ ++++ +I+P K++ E+ R++ D+ VK+ SE+++ + Sbjct: 176 VATDSHRLSQRQIELSTPSEASFDVIIPGKSLTELSRMIGDDDADVKMQFSENQVLFLLG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 S RL++G +P+ +IP + + L AV+R S++S R VKL+L+ Sbjct: 236 DTSFYSRLLEGNYPDTSRLIPKESSTTVEFEAPELLAAVERASLLSHESRNNVVKLTLTP 295 Query: 293 DKLCMTV--DNPDMGKAIESMNVY-YNECPMDICFNYKYL 329 +T+ ++PD+G E + P++I FN Y+ Sbjct: 296 TDHQVTIFSNSPDVGNVEEELAPKEIGGEPLEISFNPDYM 335 >gi|304315539|ref|YP_003850684.1| DNA polymerase III subunit beta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777041|gb|ADL67600.1| DNA polymerase III, beta subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 370 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 96/344 (27%), Positives = 177/344 (51%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ +L + + + + T+P+ +LL A D L + ++ EI I + A Sbjct: 1 MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLTAKDNKLVMYSTDMEIGIECKVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI VS+ + D+VRKL + I F + + VNI G S F + EFP Sbjct: 61 IVEEGSIVVSSKVFSDLVRKLPENT-IYFTTDQDYI--VNIKCGLSEFTISGNSSEEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +F + +VLK +++ T F +A + R L GI I++ + + VA DG+R Sbjct: 118 IPEVLKEITFSINQNVLKEMIKMTSFCVAQDMTRPILTGILMEISKNTINM--VALDGYR 175 Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +A+ + D++ + S+++P E++RI+ D +V VS + ++I I + Sbjct: 176 MAIKKYISEDLLLKEFDDFSVVIPGTTANELVRIMEDNDDNVYVSFTGNQILFEINDTKV 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L+DG + NY+ VIP + + +L A+DR S+++S + +K + + +L + Sbjct: 236 ISKLLDGNYMNYKAVIPKDFKSIVIIEKDDLIGAIDRASLLASNKSNLIKFTFNERELII 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + N + GK E +N+ ++I FN +YLLE + I S+++ Sbjct: 296 S-SNSEKGKMSERVNIDIEGNLIEIAFNSRYLLEALRVIDSEKI 338 >gi|187933007|ref|YP_001884267.1| DNA polymerase III subunit beta [Clostridium botulinum B str. Eklund 17B] gi|187721160|gb|ACD22381.1| DNA polymerase III, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 366 Score = 131 bits (330), Expect = 1e-28, Method: Compositional matrix adjust. Identities = 103/381 (27%), Positives = 190/381 (49%), Gaps = 25/381 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E+ +L+ + + I K+T+ V + + A + L + S ++ I + A V G Sbjct: 6 EKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVNADVLDKG 65 Query: 66 SITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 I + A + +I+RKL + +I KE+ + I+ S F + EFPS Sbjct: 66 EIVIDAKIFGEIIRKLPNSDIKIETVKEDV----IQITCEKSVFNVVCMNAEEFPSLPNI 121 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E+ S+LKN+++ T F++A +E R L GI F + + +L L VA DG+RLA+ Sbjct: 122 NEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRNLNL--VALDGYRLAIR 179 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + I +++P K + E+ +IL D +V ++ + + I N+E+ + RL+DG Sbjct: 180 SEFLDNDIN--LEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISRLLDG 237 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPD 303 +F NY +++P + + V + ++R S+M+ + L L + L +T N Sbjct: 238 KFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIIT-SNSQ 296 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +GK E +++ ++I FN +YLL+++ N+ S DEV+ + S S I+ KD Sbjct: 297 LGKVREEVSINLQGDEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVIKEKD 351 Query: 364 KDSKNNKDNKVNAFYVLMPMR 384 + N+ Y+++P+R Sbjct: 352 GE---------NSQYLVLPVR 363 >gi|303228573|ref|ZP_07315400.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516752|gb|EFL58667.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 373 Score = 131 bits (330), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I ++++ + + ++ + K + + + + + +E++ + E+ I I A Sbjct: 1 MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 + G++ V++ +++RKL G I K E G + I+ G S F L + +F Sbjct: 61 ILEPGTLVVASRYFQELIRKLP-GETIQLSKP-EDGNTLKITSGSSEFNLVTLHPDDFSL 118 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVAT 176 +++YV + S +K L++ T++A A+++ R G I + D ++ VAT Sbjct: 119 VEQIHDQDYV---NIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESL 235 D HR+AV +V I +I+P KA+ E+ R+L + + S+ K+ + ++I ES+ Sbjct: 176 DTHRMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESI 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDK 294 + RLI+G +P Y+ VIP D V+ + AVDRVS+++ + ++ S ++ Sbjct: 236 YIISRLIEGTYPEYEKVIPAQFDSSAVVDRKDFAGAVDRVSLLAKDMSYNVIRYDWSEEQ 295 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ N ++G A E + V + P I FN +Y+ +I+ + + D + N Sbjct: 296 VTLSSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTGDN------IHMYLKQN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V IR +DN N YV+ P+R Sbjct: 350 GPVVIR---------QDNNPNYTYVVTPVR 370 >gi|227550641|ref|ZP_03980690.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257896288|ref|ZP_05675941.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|293379369|ref|ZP_06625513.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1] gi|227180242|gb|EEI61214.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257832853|gb|EEV59274.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|292641892|gb|EFF60058.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1] Length = 376 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 170/338 (50%), Gaps = 15/338 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T+ R+ ++ L R I K TIP+ V + L + S +I I + Sbjct: 1 MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + A +I+R+L + EN+ +V I+ G +NF + Sbjct: 61 NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +L VL L+ T FA++ E R L G+ F ++ D L A Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ V V Q A I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLS-QRVIPVEQTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + + A++R S++S R V+LS+ Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYL 329 D + + ++P++GK ES++ N P++I FN Y+ Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASNGDPLEISFNPDYM 332 >gi|69246707|ref|ZP_00604075.1| DNA polymerase III, beta chain [Enterococcus faecium DO] gi|257878647|ref|ZP_05658300.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933] gi|257881313|ref|ZP_05660966.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502] gi|257885588|ref|ZP_05665241.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501] gi|257890530|ref|ZP_05670183.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410] gi|257893105|ref|ZP_05672758.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408] gi|258615269|ref|ZP_05713039.1| DNA polymerase III, beta subunit [Enterococcus faecium DO] gi|260558228|ref|ZP_05830424.1| DNA polymerase subunit III [Enterococcus faecium C68] gi|261206918|ref|ZP_05921607.1| DNA polymerase subunit III [Enterococcus faecium TC 6] gi|289566505|ref|ZP_06446929.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF] gi|293553548|ref|ZP_06674175.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039] gi|293563252|ref|ZP_06677704.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162] gi|293569158|ref|ZP_06680464.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071] gi|294616658|ref|ZP_06696429.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636] gi|294619746|ref|ZP_06699151.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679] gi|294623760|ref|ZP_06702588.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317] gi|314940130|ref|ZP_07847310.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04] gi|314943039|ref|ZP_07849843.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C] gi|314948157|ref|ZP_07851553.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082] gi|314953429|ref|ZP_07856347.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A] gi|314993832|ref|ZP_07859168.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B] gi|314998143|ref|ZP_07863025.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01] gi|68195121|gb|EAN09580.1| DNA polymerase III, beta chain [Enterococcus faecium DO] gi|257812875|gb|EEV41633.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933] gi|257816971|gb|EEV44299.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502] gi|257821444|gb|EEV48574.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501] gi|257826890|gb|EEV53516.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410] gi|257829484|gb|EEV56091.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408] gi|260075402|gb|EEW63708.1| DNA polymerase subunit III [Enterococcus faecium C68] gi|260078546|gb|EEW66248.1| DNA polymerase subunit III [Enterococcus faecium TC 6] gi|289161714|gb|EFD09590.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF] gi|291588127|gb|EFF19969.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071] gi|291590478|gb|EFF22216.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636] gi|291594016|gb|EFF25485.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679] gi|291596714|gb|EFF27937.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317] gi|291602303|gb|EFF32528.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039] gi|291604791|gb|EFF34273.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162] gi|313587855|gb|EFR66700.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01] gi|313591723|gb|EFR70568.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B] gi|313594532|gb|EFR73377.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A] gi|313598239|gb|EFR77084.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C] gi|313640635|gb|EFS05215.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04] gi|313645411|gb|EFS09991.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082] Length = 376 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/338 (28%), Positives = 170/338 (50%), Gaps = 15/338 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T+ R+ ++ L R I K TIP+ V + L + S +I I + Sbjct: 1 MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + A +I+R+L + EN+ +V I+ G +NF + Sbjct: 61 NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +L VL L+ T FA++ E R L G+ F ++ D L A Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DNSLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ V V Q A I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLS-QRVIPVEQAADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + + A++R S++S R V+LS+ Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 D + + ++P++GK ES++ + P+DI FN Y+ Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLDISFNPDYM 332 >gi|89101118|ref|ZP_01173954.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] gi|89084173|gb|EAR63338.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] Length = 378 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 177/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R +++ + + + + TIP+ + + A++ + + S +I I IP Sbjct: 1 MKFQIQRDSLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI + A +IV+KL D +I +N L T I G S F L Sbjct: 61 SDGNEIVEISRTGSIVLQAKFFSEIVKKLPTDKVEIDV--QNHLQT--VIRSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + F + + +LK +V +T FA++T E R L G+ + + ED +L Sbjct: 117 GLDAEEYPHLPQLSEEKIFRIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--EDAEL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + + + + ++++P K++ E+ +IL + + + ++E+++ Sbjct: 175 TCIATDSHRLALRKAKVETEANESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E+L RL++G +P+ +IP + E+ + QA+DR S+++ R VK S Sbjct: 235 AENLLFFSRLLEGNYPDTTRLIPNESKTEIGMQTKEFLQAIDRASLLAREGRNNVVKFST 294 Query: 291 SSDKLC-MTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 D + ++ + P++GK +E + + E + I F+ KY+++ + + E+ Sbjct: 295 IEDGVVEISSNTPEIGKVVEEVQSQFIEGEDLKISFSAKYMMDALKALEGTEI 347 >gi|332665319|ref|YP_004448107.1| DNA polymerase III subunit beta [Haliscomenobacter hydrossis DSM 1100] gi|332334133|gb|AEE51234.1| DNA polymerase III, beta subunit [Haliscomenobacter hydrossis DSM 1100] Length = 372 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/344 (28%), Positives = 172/344 (50%), Gaps = 10/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V S++L+ L A I +P+ L D L I A+ + IT + Sbjct: 1 MKFSVSSSELLKQLQVAAGSIGSNPVLPILEDFLFSIADNKLTISATDLDTAITTQMDVM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I V A +L D ++ L EN E+ ++G + L +FP+ Sbjct: 61 ADTDGTIAVPAKILLDTLKALPQQPITFSIDENTFAIEITSAYG--KYRLSGENGQDFPA 118 Query: 121 TKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + + S+ L V +T FA + +E+R + G++F ++ K+ VATD H Sbjct: 119 IPEPEAEDDTITIPSNALIQGVNKTLFATSNDELRLAMMGVYFQVDFS--KITMVATDAH 176 Query: 180 RLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +L D+ ++++ S I+P+KA+ I +L + D VK+S +++ + + +S Sbjct: 177 KLVRYTFTDLSSEVST--SFILPKKALNLIKNVLPAGDE-VKMSFNKANAFFSFGNTQIS 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLID +P+Y VIP N L V+ + ++ R++I ++ V L++S L ++ Sbjct: 234 CRLIDSRYPDYHAVIPVDNPFLLTVSRADFASSLKRIAIYANKTTNQVILNISPGNLIVS 293 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D +A E ++ Y+ P+ I FN K+LLE+++ + SDEV Sbjct: 294 AQDLDFSNEATEKLSCTYDGDPLMIGFNAKFLLEMLNVLESDEV 337 >gi|257866277|ref|ZP_05645930.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30] gi|257873207|ref|ZP_05652860.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10] gi|257875894|ref|ZP_05655547.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20] gi|325567640|ref|ZP_08144307.1| DNA-directed DNA polymerase III beta subunit [Enterococcus casseliflavus ATCC 12755] gi|257800235|gb|EEV29263.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30] gi|257807371|gb|EEV36193.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10] gi|257810060|gb|EEV38880.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20] gi|325159073|gb|EGC71219.1| DNA-directed DNA polymerase III beta subunit [Enterococcus casseliflavus ATCC 12755] Length = 376 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 90/338 (26%), Positives = 175/338 (51%), Gaps = 15/338 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T+ R++ ++ L R I K TIP+ V L ++ L + S +I I + Sbjct: 1 MKLTLNRTEFMQELQTVQRAISTKTTIPILTGVKLSLSEKGLTMTGSNADISIETFLSVE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +IVR+L + +N +V I+ G +NF + Sbjct: 61 NEKAQMQIEKTGAIVLQARFFSEIVRRLPESTLTLEVLDN---NQVAITSGKANFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E S E+ + VL +V T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADSYPHLPVVESQDSIEIPAHVLNKVVSETVFAVSQHESRPILTGVHFVL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I++P K++ E+ R L+ ++ ++++S+ ++++ + Sbjct: 176 VATDSHRLSQRVIPLESGETAF-NIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTK 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + L QA++R S++S R V+L++S Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLQAIERASLLSHEGRNNIVRLAISE 294 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYL 329 + + + ++P++GK E ++ P++I FN Y+ Sbjct: 295 EAVVLYGNSPEIGKVEEDLSFEKVTGDPLEISFNPDYM 332 >gi|29374663|ref|NP_813815.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583] gi|227518107|ref|ZP_03948156.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104] gi|227555686|ref|ZP_03985733.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22] gi|229547128|ref|ZP_04435853.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322] gi|229550698|ref|ZP_04439423.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200] gi|255971550|ref|ZP_05422136.1| DNA polymerase subunit III [Enterococcus faecalis T1] gi|255974523|ref|ZP_05425109.1| DNA polymerase subunit III [Enterococcus faecalis T2] gi|256618526|ref|ZP_05475372.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200] gi|256761855|ref|ZP_05502435.1| DNA polymerase subunit III [Enterococcus faecalis T3] gi|256854982|ref|ZP_05560343.1| DNA polymerase III [Enterococcus faecalis T8] gi|256957014|ref|ZP_05561185.1| DNA polymerase subunit III [Enterococcus faecalis DS5] gi|256960823|ref|ZP_05564994.1| DNA polymerase subunit III [Enterococcus faecalis Merz96] gi|256963984|ref|ZP_05568155.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704] gi|257078691|ref|ZP_05573052.1| DNA polymerase subunit III [Enterococcus faecalis JH1] gi|257081348|ref|ZP_05575709.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol] gi|257084005|ref|ZP_05578366.1| DNA polymerase subunit III [Enterococcus faecalis Fly1] gi|257087835|ref|ZP_05582196.1| DNA polymerase subunit III [Enterococcus faecalis D6] gi|257088487|ref|ZP_05582848.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188] gi|257417427|ref|ZP_05594421.1| DNA polymerase subunit III [Enterococcus faecalis AR01/DG] gi|257418841|ref|ZP_05595835.1| DNA polymerase III [Enterococcus faecalis T11] gi|257421344|ref|ZP_05598334.1| DNA polymerase III subunit beta [Enterococcus faecalis X98] gi|293382661|ref|ZP_06628589.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712] gi|293387927|ref|ZP_06632463.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613] gi|294781249|ref|ZP_06746596.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1] gi|300862250|ref|ZP_07108330.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|307268917|ref|ZP_07550281.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248] gi|307274013|ref|ZP_07555223.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855] gi|307276498|ref|ZP_07557618.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134] gi|307284060|ref|ZP_07564230.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860] gi|307287181|ref|ZP_07567252.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109] gi|307296591|ref|ZP_07576411.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411] gi|312901295|ref|ZP_07760578.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470] gi|312903108|ref|ZP_07762289.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635] gi|312908813|ref|ZP_07767752.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512] gi|312951719|ref|ZP_07770613.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102] gi|312979545|ref|ZP_07791227.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516] gi|29342121|gb|AAO79887.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583] gi|227074441|gb|EEI12404.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104] gi|227175196|gb|EEI56168.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22] gi|229304131|gb|EEN70127.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200] gi|229307710|gb|EEN73697.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322] gi|255962568|gb|EET95044.1| DNA polymerase subunit III [Enterococcus faecalis T1] gi|255967395|gb|EET98017.1| DNA polymerase subunit III [Enterococcus faecalis T2] gi|256598053|gb|EEU17229.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200] gi|256683106|gb|EEU22801.1| DNA polymerase subunit III [Enterococcus faecalis T3] gi|256709495|gb|EEU24542.1| DNA polymerase III [Enterococcus faecalis T8] gi|256947510|gb|EEU64142.1| DNA polymerase subunit III [Enterococcus faecalis DS5] gi|256951319|gb|EEU67951.1| DNA polymerase subunit III [Enterococcus faecalis Merz96] gi|256954480|gb|EEU71112.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704] gi|256986721|gb|EEU74023.1| DNA polymerase subunit III [Enterococcus faecalis JH1] gi|256989378|gb|EEU76680.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol] gi|256992035|gb|EEU79337.1| DNA polymerase subunit III [Enterococcus faecalis Fly1] gi|256995865|gb|EEU83167.1| DNA polymerase subunit III [Enterococcus faecalis D6] gi|256997299|gb|EEU83819.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188] gi|257159255|gb|EEU89215.1| DNA polymerase subunit III [Enterococcus faecalis ARO1/DG] gi|257160669|gb|EEU90629.1| DNA polymerase III [Enterococcus faecalis T11] gi|257163168|gb|EEU93128.1| DNA polymerase III subunit beta [Enterococcus faecalis X98] gi|291079967|gb|EFE17331.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712] gi|291082664|gb|EFE19627.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613] gi|294451712|gb|EFG20167.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1] gi|295112342|emb|CBL30979.1| DNA polymerase III, beta subunit [Enterococcus sp. 7L76] gi|300848775|gb|EFK76532.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|306495927|gb|EFM65515.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411] gi|306501779|gb|EFM71070.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109] gi|306503431|gb|EFM72680.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860] gi|306506825|gb|EFM75975.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134] gi|306509321|gb|EFM78381.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855] gi|306514725|gb|EFM83276.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248] gi|310625251|gb|EFQ08534.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512] gi|310630292|gb|EFQ13575.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102] gi|310633499|gb|EFQ16782.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635] gi|311287727|gb|EFQ66283.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516] gi|311291672|gb|EFQ70228.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470] gi|315026676|gb|EFT38608.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2137] gi|315030121|gb|EFT42053.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4000] gi|315033556|gb|EFT45488.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0017] gi|315036379|gb|EFT48311.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0027] gi|315143594|gb|EFT87610.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2141] gi|315148268|gb|EFT92284.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4244] gi|315151292|gb|EFT95308.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0012] gi|315153718|gb|EFT97734.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0031] gi|315155122|gb|EFT99138.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0043] gi|315158748|gb|EFU02765.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0312] gi|315163332|gb|EFU07349.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0645] gi|315165727|gb|EFU09744.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1302] gi|315168221|gb|EFU12238.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1341] gi|315170512|gb|EFU14529.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1342] gi|315174181|gb|EFU18198.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1346] gi|315573990|gb|EFU86181.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309B] gi|315578840|gb|EFU91031.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0630] gi|315581941|gb|EFU94132.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309A] gi|323479241|gb|ADX78680.1| DNA polymerase III, beta subunit [Enterococcus faecalis 62] Length = 376 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 17/339 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+TV+RS L+ L R I K TIP+ V + ++ L + S +I I + Sbjct: 1 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ GSI + + +I+RKL + F E +V I+ G ++F + Sbjct: 61 DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDM---FTMEVLDNNQVAITSGKADFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + +L +L ++ T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ V Q + +I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLS-QRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S++ ++ L A++R S++S R V+LS+S Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYL 329 D + + ++P++GK E++N Y N +DI FN Y+ Sbjct: 295 DSVVLYGNSPEIGKVEEALN-YENVSGEALDISFNPDYM 332 >gi|154684520|ref|YP_001419681.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens FZB42] gi|154350371|gb|ABS72450.1| DnaN [Bacillus amyloliquefaciens FZB42] Length = 378 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 183/344 (53%), Gaps = 20/344 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL A + +N+ T I G + F L Sbjct: 61 DDDKEIVTIDQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++ E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ A++DI + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDNQELVDIVITETQVLF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLS 293 Query: 290 LS-SDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLE 331 +D L ++ ++P++GK +E+ + + ++I F+ KY+++ Sbjct: 294 AKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMD 337 >gi|295402122|ref|ZP_06812081.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109153|ref|YP_003987469.1| DNA polymerase III subunit beta [Geobacillus sp. Y4.1MC1] gi|294975805|gb|EFG51424.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214254|gb|ADP72858.1| DNA polymerase III, beta subunit [Geobacillus sp. Y4.1MC1] Length = 378 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 178/356 (50%), Gaps = 24/356 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKIT++R +++ + + + + TIP+ + + A + + S +I I IP Sbjct: 1 MKITIDREALVQSVQDVMKAVSPRTTIPILTGIKITATPQGVTLTGSDSDISIESFIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNF 108 + GSI + A +IV+KL + K E+ + N I G + F Sbjct: 61 DEDKVLVEIAETGSIVLQARFFSEIVKKLPE-------KTVEIEVQPNFLTVIRSGKAEF 113 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L E+P + E FE+ + +LK ++ +T FA++ E R L G+ + I +E+ Sbjct: 114 SLNGLDAEEYPRLPQIEEENVFEIPTDLLKTIIRQTVFAVSVSETRPILTGVNWRIEDEE 173 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L +C ATD HRLA+ + I + + ++++P K++ E+ +IL ++ VK+ ++ ++I Sbjct: 174 L-ICT-ATDSHRLALRKAKIETENHQSHNVVIPGKSLNELSKILDDSNAPVKIVITANQI 231 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL+DG +P +IP + ++ VN QA+DR S+++ R VK Sbjct: 232 LFKTKRLLFFSRLLDGNYPETSRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNVVK 291 Query: 288 LSLSSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 L+ SD + ++ +P++GK E + E + I F+ KY+++ + + ++ Sbjct: 292 LTTLSDGIIEISSVSPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTDI 347 >gi|88608357|ref|YP_506066.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str. Miyayama] gi|88600526|gb|ABD45994.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 372 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 108/389 (27%), Positives = 190/389 (48%), Gaps = 35/389 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +TV++ + +L + + RK+TI HV ++ +E+ + E+ +T ++ Sbjct: 9 VTVQQDALTRILANLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68 Query: 63 VCGS-ITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V + I+V A LY+IV++L G +S K N + I F L FP Sbjct: 69 VIDAVISVDAFRLYEIVKRLPTDVGVVLSIEKNNLVVRSRRI-----EFSLPYLDAKHFP 123 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 EEE + A +++L + FA +TE R +LNG++F + E K+ ATD H Sbjct: 124 LISEEEKIGQINFAVDEIRSLFNKVRFATSTESTRQHLNGVYFESDGE--KITVAATDVH 181 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237 RLAVA ++ + S I+P+K V E++++ S K+ + + E SRI + + + Sbjct: 182 RLAVA--TLMKKTGLKFSCIIPKKTVLEMIKLSSGKEVELFLHGREYVSRIKMVFGGVRL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI G FPN+ VIP S L + L +++RV ++S + +A+ + + +L + Sbjct: 240 NSKLIAGTFPNFAAVIPHSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299 Query: 298 TVDNPDMGKAIESMNVYYNEC---PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 N D ES+ + NE + I FN+ YLL+I+ + + EV + +++ Sbjct: 300 DASNSDASFGRESLEL--NEDIGEEISIYFNHIYLLDILLALD-----NKEVTMKFNNAT 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S V +G + +A YV+MPM Sbjct: 353 SQVLFQGDE-----------SALYVVMPM 370 >gi|218261816|ref|ZP_03476531.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii DSM 18315] gi|218223762|gb|EEC96412.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii DSM 18315] Length = 374 Score = 131 bits (329), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 97/349 (27%), Positives = 172/349 (49%), Gaps = 16/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + +L L ++I KN++P+ L L I AS E + S Sbjct: 1 MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLV----TS 56 Query: 61 VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 VDV G VSA +L D +++L + ++ L ++ +G NF Q Sbjct: 57 VDVMNAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK--G 114 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P K + S + + +L N + R FA A +E+R +NGI+F I+ +DL V Sbjct: 115 DTYPQQKPLNDNAISIMMDAQMLLNGISRALFATADDELRPVMNGIYFDIHTDDLTF--V 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+DGH+L V ++ + + S I+P+K + +LS ++ + + ++ ++N + Sbjct: 173 ASDGHKL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEEGMISIKFDDNNAYVNCAN 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 M RLI+G +PNY +VIP N ++ ++ + A+ RVS+ S+ VKL L + Sbjct: 232 FEMVCRLIEGRYPNYNSVIPQENPFKVTIDRVSFLNALKRVSVFSNPASSLVKLQLKESE 291 Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ + D + E V ++ + I F YL+EI+ NI+S+EV+ Sbjct: 292 MLVSAQDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINSEEVI 340 >gi|308171893|ref|YP_003918598.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens DSM 7] gi|307604757|emb|CBI41128.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens DSM 7] Length = 378 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 183/344 (53%), Gaps = 20/344 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL A + +N+ T I G + F L Sbjct: 61 EDDKEIVTIDQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRFGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++ E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ A++DI + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDSQELVDIVITETQVLF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLS 293 Query: 290 LS-SDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLE 331 +D L ++ ++P++GK +E+ + + ++I F+ KY+++ Sbjct: 294 AKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMD 337 >gi|328551702|gb|AEB22194.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens TA208] gi|328909961|gb|AEB61557.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens LL3] Length = 378 Score = 130 bits (328), Expect = 2e-28, Method: Compositional matrix adjust. Identities = 93/344 (27%), Positives = 183/344 (53%), Gaps = 20/344 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL A + +N+ T I G + F L Sbjct: 61 EDDKEIVTIDQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++ E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ A++DI + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDSQELVDIVITETQVLF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLS 293 Query: 290 LS-SDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLE 331 +D L ++ ++P++GK +E+ + + ++I F+ KY+++ Sbjct: 294 AKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMD 337 >gi|116071808|ref|ZP_01469076.1| DNA polymerase III subunit beta [Synechococcus sp. BL107] gi|116065431|gb|EAU71189.1| DNA polymerase III subunit beta [Synechococcus sp. BL107] Length = 385 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 180/357 (50%), Gaps = 19/357 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ E E G +V ++ ++ ++ P ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L ++ T FA + +E + L G+ N + L+ A ATDG Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227 HRLAV +VD Q A ++ +P +++ E+ R+++ S VSL R Sbjct: 178 HRLAVLQVDDALQDAASASDDASEGFAVTLPARSLREVERLMAGWRSEDPVSLFCDRGQV 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + L + + S R ++G +PNY +IP ++ L ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVK 296 Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D+ + ++ D D+G ES+ + I FN +YLL+ + + S+ VV Sbjct: 297 FTSQPDEGVVQISADAQDVGSGSESLAASLTGDAIQIAFNVRYLLDGLKAMGSERVV 353 >gi|330719908|gb|EGG98380.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047] Length = 198 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 71/189 (37%), Positives = 111/189 (58%), Gaps = 12/189 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M+ + R D+++ L ++ER+ T+PV ++L+ DG L + + E+E+ G + Sbjct: 1 MRFAISREDLIKPLTLVAGVVERRQTLPVLSNILIVVEDGQLSLTGTDLEVELVGRVTLT 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G +TV A L DI + L D AQI+ E++ ++ + G S F L + P + Sbjct: 61 EPAE---AGEVTVPARKLMDICKTLPDDAQITLQLEDD---KMILKSGRSRFSLTTLPAT 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FPS +E F + S LK L++RT AMA +++RYYLNG+ F I ++ KL AVAT Sbjct: 115 DFPSVEESPQNLDFVVQQSELKRLIDRTSIAMAQQDVRYYLNGMLFEI--QNAKLRAVAT 172 Query: 177 DGHRLAVAE 185 DGHRLA++E Sbjct: 173 DGHRLAMSE 181 >gi|327533855|gb|AEA92689.1| DNA-directed DNA polymerase III beta subunit [Enterococcus faecalis OG1RF] Length = 376 Score = 130 bits (328), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 17/339 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+TV+RS L+ L R I K TIP+ V + ++ L + S +I I + Sbjct: 1 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ GSI + + +I+RKL + F E +V I+ G ++F + Sbjct: 61 DEKAQMTIEHTGSIVLQSRFFGEIIRKLPEDM---FTMEVLDNNQVAITSGKADFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + +L +L ++ T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ V Q + +I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLS-QRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S++ ++ L A++R S++S R V+LS+S Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYL 329 D + + ++P++GK E++N Y N +DI FN Y+ Sbjct: 295 DSVVLYGNSPEIGKVEEALN-YENVSGEALDISFNPDYM 332 >gi|172056047|ref|YP_001812507.1| DNA polymerase III subunit beta [Exiguobacterium sibiricum 255-15] gi|171988568|gb|ACB59490.1| DNA polymerase III, beta subunit [Exiguobacterium sibiricum 255-15] Length = 377 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 97/361 (26%), Positives = 185/361 (51%), Gaps = 24/361 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M IT++R +++ + + + + TIP+ + L+A+ + + S EI I I A Sbjct: 1 MHITIQRDTLIQAIQDVAKAVSSRTTIPILTGIKLEAHGDGMTLTGSDTEISIERTIYAE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +V GS+ ++A DIV+KL I N + I G + F+L Sbjct: 61 ENGTSYVTVHRAGSVVLNARFFGDIVKKLPTDEVILEVSPNFM---TRIQSGTAEFHLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP + + F L + +L++++ +T FA+A +E R L G+ F ++D+ C Sbjct: 118 LDPDEFPRLPQVDGGQQFRLPADLLRSMIRQTSFAVAVQETRPVLTGVNFSA-DKDILTC 176 Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 V+TD HRLA+ A+ + +I+ ++IVP K++ E+ ++LS D V ++++ +I Sbjct: 177 -VSTDSHRLALRRAQFETDNEIS-FQNVIVPGKSLNELSKLLS--DGHVDITITNQQILF 232 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 ++ + RL+DG +P+ +IP +R+N L QA+DR S+++ R +K + Sbjct: 233 KMKHVLFFSRLLDGNYPDTSRLIPEEYRTAVRMNAKELLQAIDRASLLAREDRNNVIKFA 292 Query: 290 L-SSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + + ++ +P++GK E +++ E + I FN KY++ D + + + D E+ Sbjct: 293 AEGTTAVEISSHSPEVGKVSEQVSILSLEGEELKISFNSKYMM---DALKALDATDIEIQ 349 Query: 348 F 348 F Sbjct: 350 F 350 >gi|313204262|ref|YP_004042919.1| DNA polymerase iii, beta subunit [Paludibacter propionicigenes WB4] gi|312443578|gb|ADQ79934.1| DNA polymerase III, beta subunit [Paludibacter propionicigenes WB4] Length = 378 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 168/348 (48%), Gaps = 10/348 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 MK V +D+L L R+I KN++P+ + L L + AS E IT Sbjct: 1 MKFIVSSTDLLSHLQAISRVINNKNSLPILDNFLFHLEGKTLTMTASDIETTLITSMEVE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G + V++ LL D +R+ + ++ L + ++G NF Q+ E+P Sbjct: 61 SADGNGKVAVASRLLLDTLREFSEQPLTFSINDSNLAMVITSANGSYNFIGQN--GDEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + ++ S L S L + +T F A +E+R +NG+FF I + L L VATD Sbjct: 119 RLPQLQDDAQSLTLPVSTLSAGISKTLFCTADDELRPVMNGVFFDIVADSLTL--VATDA 176 Query: 179 HRLA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 H+L + + + + I+P+K + IL + V++ H + + Sbjct: 177 HKLVRYKTSHTSASVEGEETVNFILPKKPANMLKNILPRESGEVEIRFDNKNAHFKLANY 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +M R ++G +PNY VIP SN ++ ++ L A+ RVS+ ++ VKL+ +++ Sbjct: 237 TMICRQVEGRYPNYNGVIPKSNPFKIIIDRVTLLNALKRVSVFANQASNLVKLAFGQNQI 296 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + D A E++ ++ P+ I F +L+EI+ NI++ +++ Sbjct: 297 HISAQDIDFSISAEETITCQFDADPIKIGFKSSFLIEILGNINATDII 344 >gi|300362677|ref|ZP_07058853.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri JV-V03] gi|300353668|gb|EFJ69540.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri JV-V03] Length = 376 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 172/350 (49%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T+ I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTK--IVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D +KV+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGESDPEIKVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK+SL Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMSLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E + E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRASITDSII 345 >gi|224477955|ref|YP_002635561.1| DNA polymerase III subunit beta [Staphylococcus carnosus subsp. carnosus TM300] gi|222422562|emb|CAL29376.1| DNA polymerase III beta subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 378 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 177/351 (50%), Gaps = 15/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R + L + I + T+P+ + + A + + + S EI I +IP Sbjct: 2 MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKEDEVILTGSDSEISIEISIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNAQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPQVSQDDAIQLPIKVLKNVIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKLEDEDIDNKNVIIPGKALAELNKIVSDSEDDINIFFASNQVLFKV 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 ++ RL++G +P+ + P + + ++ ++ ++ A+DR S+++ +KLS Sbjct: 237 GHINFISRLLEGHYPDTSRLFPENYETKIEMSNSDFYHAIDRASLLAREGGNNVIKLSTG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 ++++ ++ +P++G E +N E + I FN KY+++ + I SDEV Sbjct: 297 NEEVELSSTSPEIGTVKEDVNANDVEGSNLKISFNSKYMMDALKAIDSDEV 347 >gi|206900545|ref|YP_002251261.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12] gi|206739648|gb|ACI18706.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12] Length = 367 Score = 130 bits (327), Expect = 3e-28, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 185/389 (47%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ D+ + L + K TIP+ +V ++A + L ++ + E+ + ++P Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEVGLALSMPVI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + A L D++ KL + + E I G S+ +Q EFP Sbjct: 61 VEEPGEVCLPASLFIDVIGKLPEVTLEVYVNERNRAI---IHAGYSDIEIQGESPEEFPK 117 Query: 121 TKEEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y L + +++T FA A +EI+ L G+ F +D KL VA DGH Sbjct: 118 VEVGNITEYHASLDRILFAKAIKQTIFAAAEDEIKQVLTGVLFE--GKDGKLNMVAVDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA+ ++I PSIIVP K++ E +I++ + V ++ ++++ N + Sbjct: 176 RLALKTLEIDKD---FPSIIVPAKSLKEWQKIITKALEDRVNIAALDNQVVFNCGEIYFI 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297 RL+ G+FP Y +IP + N + ++R+ + + + + VK+SLSS+++ + Sbjct: 233 SRLLQGQFPAYDKIIPTEFTASFKANRKDFLDILERMEVFAEIDQTNTVKISLSSEEVVI 292 Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + G A E + N + ++I FN +YL++ +DN DE+V + S Sbjct: 293 STLPSERGFAKEVLPAEVNIDGNLEIGFNVEYLMDPLDNADW-----DEIVMKFTSDLGP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + N Y+LMP+R+ Sbjct: 348 ALITSPEDE---------NYTYILMPVRL 367 >gi|319788989|ref|YP_004150622.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1] gi|317113491|gb|ADU95981.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1] Length = 364 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 113/401 (28%), Positives = 186/401 (46%), Gaps = 53/401 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V ++ I + + A +++ +P+ +VLL+A D LL + A+ EI I+ + S Sbjct: 1 MKIKVNKALIRDAVKVAASAADKRGNVPILSNVLLEAEDNLLRLVATNLEIGISTVVDCS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN---------FYLQ 111 V+ CG TV+A G F + G EV++S GDS F L Sbjct: 61 VEECGKTTVNA------------GKAAKLFS-SITGEEVSLSAGDSKLVVETANSRFSLA 107 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK 170 + P EFP E + L S + + + +A + +E RY L G+ F +N Sbjct: 108 TLPPEEFPEV-ELPQTFPVTLPSQEIDRAIRKVAYAASKDEARYILTGVLFRSVNG---A 163 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L AVATDGHRLA+ E+ AQ I+P+K++ E+ ++L + V + + ++++ Sbjct: 164 LHAVATDGHRLALYEISAAAQGVNS---IIPKKSLSELKKLLRESE-EVGIVETGNKLYF 219 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLS 289 N M LI+GE+P+Y VIP N K L + L A+ V+ I ++ + Sbjct: 220 NTGDTVMWTSLIEGEYPDYTAVIPEGNSKVLTADREELLSALKEVAVIFDKEEVRGAVFT 279 Query: 290 LSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 LS KL +T + G A E ++ V Y+ I FN +L+E + + D E Sbjct: 280 LSDGKLTITARKIE-GDAAEEAEVTIPVDYSGGEFQIGFNIVHLIESVGSF------DGE 332 Query: 346 VV-FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + V I ++ N V+MPM++ Sbjct: 333 TLKIAMEEPVTPVLITSPEEPQLTN---------VIMPMKV 364 >gi|329942797|ref|ZP_08291576.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10] gi|332287389|ref|YP_004422290.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC] gi|313847969|emb|CBY16966.1| DNA polymerase III, beta chain [Chlamydophila psittaci RD1] gi|325506563|gb|ADZ18201.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC] gi|328815057|gb|EGF85046.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10] gi|328914638|gb|AEB55471.1| DNA polymerase III, beta subunit [Chlamydophila psittaci 6BC] Length = 366 Score = 130 bits (327), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTI--ANGTATVVGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++++ + I+P KAV EI++ L S+DS + L +++I + + + Sbjct: 175 RLAKTDIEVSLDKSFTGDYIIPIKAVEEIIK-LCSEDSEASIFLDQAKIAVECGNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI + L ++ L + +V++ ++ +VK + + +L +T Sbjct: 234 KLLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V RL S+S + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G DS + +V+MPMR+ Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363 >gi|257888094|ref|ZP_05667747.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733] gi|257899272|ref|ZP_05678925.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|293572719|ref|ZP_06683683.1| DNA polymerase III, beta subunit [Enterococcus faecium E980] gi|257824148|gb|EEV51080.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733] gi|257837184|gb|EEV62258.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|291607211|gb|EFF36569.1| DNA polymerase III, beta subunit [Enterococcus faecium E980] Length = 376 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/338 (28%), Positives = 170/338 (50%), Gaps = 15/338 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T+ R+ ++ L R I K TIP+ V + L + S +I I + Sbjct: 1 MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + A +I+R+L + EN+ +V I+ G +NF + Sbjct: 61 NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +L VL L+ T FA++ E R L G+ F ++ D L A Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ V V Q A I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLS-QRVIPVEQTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + + A++R S++S R V+LS+ Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 D + + ++P++GK ES++ + P++I FN Y+ Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLEISFNPDYM 332 >gi|282907049|ref|ZP_06314897.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus subsp. aureus Btn1260] gi|282329948|gb|EFB59469.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus subsp. aureus Btn1260] Length = 377 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPGQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|205371911|ref|ZP_03224731.1| DNA polymerase III subunit beta [Bacillus coahuilensis m4-4] Length = 378 Score = 130 bits (326), Expect = 4e-28, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 184/355 (51%), Gaps = 22/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++R ++++ + + + + TIP+ + + AN+ + + S +I I IP Sbjct: 1 MKFTIQRDNLVQSIQDVMKAVSSRTTIPILTGIKMIANEEGVTLTGSDSDISIESYIPVE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQ 111 VDV G + + A +IV+KL D +I + + I G + F L Sbjct: 61 EEDQQIVDVQQSGGVVLQAKFFSEIVKKLPLDTVEIEVMGQ----YQTVIRSGKAEFNLN 116 Query: 112 SFPESEFP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 +E+P T EEE V F++ + +LK L+ +T FA++T E R L G+ + + ++L Sbjct: 117 GLDPAEYPHLPTIEEENV--FKVPTDLLKTLIRQTVFAVSTSETRPILTGVNWKVEHDEL 174 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 C +ATD HRLA+ + I ++++P K++ E+ +IL + V++ ++E+++ Sbjct: 175 N-C-IATDSHRLAMRKAKIELGSDASYNVVIPGKSLNELSKILDDNNELVEIVITENQVL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 + L RL++G +P+ +IP EL + + QA+DR S+++ R VKL Sbjct: 233 FKAKHLLFFSRLLEGNYPDTSRLIPTEKKTELELVTKDFLQAIDRASLLAREGRNNVVKL 292 Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 S L + + ++ ++P++GK +E + E + I F+ KY+++ + + E+ Sbjct: 293 STLEAGSIEVSSNSPEIGKVVEEIQSGKVEGEELKISFSAKYMMDALKVLEGPEI 347 >gi|329312725|gb|AEB87138.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus T0131] Length = 377 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTSIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|320355369|ref|YP_004196708.1| DNA polymerase III subunit beta [Desulfobulbus propionicus DSM 2032] gi|320123871|gb|ADW19417.1| DNA polymerase III, beta subunit [Desulfobulbus propionicus DSM 2032] Length = 376 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 88/345 (25%), Positives = 177/345 (51%), Gaps = 17/345 (4%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 + R D+L+ +G I +K T+ + +VLL+ + + + EI + +PA V Sbjct: 7 IGRDDLLKAIGAQQNITNKKGTLAILSNVLLEVQPDHIVLTGTDLEIGLKQRVPAEVLET 66 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS---T 121 G++T+ A L+++ R + G+ I KE + V IS G S + L EFPS Sbjct: 67 GTLTLPAKKLFEVAR--ESGSSILSLKELD-NNWVEISAGPSLYRLAGMVADEFPSFPAY 123 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATDG 178 EE V + S +L +LV++T F++A + E + L + ++ + L V +DG Sbjct: 124 NEEAMVI---MESVILADLVDKTVFSIAQDKENMFTLTAAMLQKVMQDDHVMLKMVTSDG 180 Query: 179 HRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 HRL + ++ + ++ P ++PR+ V EI + +K +S+ + E + L + Sbjct: 181 HRLTIMSKEVETSLEQLHLNPITLIPRRGVQEIRKFCENK-TSLSFGVEEKQAVLKSDDS 239 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +RL++G+FP++Q ++ S + +R++ +++ R+++ + A+K+ ++ + Sbjct: 240 LLIIRLMEGDFPDFQGLLSVLSKENSIRIDRIRFLESLKRINLFTEDLFHAIKMDIADNT 299 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + +T N D G A + NV Y+ P+ + FN +Y +E + + D Sbjct: 300 MVLTSQNADFGSAKDEFNVEYSGPPLTLGFNCRYFIETLQVMEGD 344 >gi|298693324|gb|ADI96546.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus ED133] Length = 377 Score = 130 bits (326), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVIELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|188587627|ref|YP_001919467.1| DNA polymerase III subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251779638|ref|ZP_04822558.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188497908|gb|ACD51044.1| DNA polymerase III, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083953|gb|EES49843.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 366 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 103/381 (27%), Positives = 188/381 (49%), Gaps = 25/381 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E+ +L+ + + I K+T+ V + + A + L + S ++ I + A V G Sbjct: 6 EKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVKADVLDKG 65 Query: 66 SITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 I + A + +I+RKL + +I KE+ + I+ S F + EFPS Sbjct: 66 EIVIDAKIFGEIIRKLPNSDIKIETVKEDV----IQITCEKSVFNVVCMNAEEFPSLPNI 121 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E+ S+LKN+++ T F++A +E R L GI F + + L L VA DG+RLA+ Sbjct: 122 NEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRTLNL--VALDGYRLAIR 179 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + I +++P K + E+ +IL D +V ++ + + I N+E+ + RL+DG Sbjct: 180 SEFLDNDIN--LEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISRLLDG 237 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPD 303 +F NY +++P + + V + ++R S+M+ + L L + L +T N Sbjct: 238 KFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIIT-SNSQ 296 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +GK E + + ++I FN +YLL+++ N+ S DEV+ + S S I+ KD Sbjct: 297 LGKVREEVLINLQGEEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVIKEKD 351 Query: 364 KDSKNNKDNKVNAFYVLMPMR 384 + N+ Y+++P+R Sbjct: 352 GE---------NSQYLVLPVR 363 >gi|297570054|ref|YP_003691398.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925969|gb|ADH86779.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus AHT2] Length = 376 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 108/393 (27%), Positives = 195/393 (49%), Gaps = 27/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + V R D L L I +K T+ V ++LL+++ L + A+ E+ I IPA Sbjct: 3 LAFNVSRLDFLTALAALQNITGKKGTLAVLANILLESDQEGLVMTATDLEVGIRCRIPAE 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+T+ A L+++V++ ++ E + + V IS S+ L EFPS Sbjct: 63 ILSPGSVTLPARKLFELVKESEEK---HLHLEEQENSWVKISAESSDCRLSGISADEFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATD 177 + ++++ +L+++T +++A E E + L GI I +E L V++D Sbjct: 120 FPPYREDNLVAIPTALMTDLIDKTIYSVAHEGENNFNLAGILLEKEILDEGHFLRMVSSD 179 Query: 178 GHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRL++ E + ++ + I++P+K + EI R L ++ +V + L E + L Sbjct: 180 GHRLSMMEGKVETDLSSLEMDRVILIPKKGIQEI-RKLCDEEETVLLGLEEKQAVLKAGG 238 Query: 235 LSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ VRL+ G+FP+Y+ +I N K + ++ + ++ RV+I + R AV + +D Sbjct: 239 YTLVVRLMSGDFPDYKGIIQVINKAKHIGIDRRKMMHSLKRVNIFTEDRYNAVNFIIEND 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDS 352 K+ ++ N D G A E + Y M+I FN KY E + +V+D E V ++S Sbjct: 299 KITLSSQNMDYGSAREEVPAGYQGESMEIGFNGKYFYEAL------QVMDSEKVKAYINS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G DKD V+MPM++ Sbjct: 353 EESPCLLQG-DKDP--------GYLSVIMPMKL 376 >gi|89891238|ref|ZP_01202745.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria bacterium BBFL7] gi|89516550|gb|EAS19210.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria bacterium BBFL7] Length = 371 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 93/342 (27%), Positives = 169/342 (49%), Gaps = 8/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S + + L +I NT+P+ + LL+ N L++ AS E + A+ Sbjct: 1 MKFIVSSSYLQKHLQMLGGVINSNNTLPILDNFLLELNGKELKVSASDMETTMLTALEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A LL D ++ + ++F +N + T +SH + + EFP Sbjct: 61 SEDDGSIAIPAKLLLDTLKTFPE-QPLTFSADNGIMT---VSHDKGSSEIACANGEEFPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S + L + +T FA +++R ++G+FF + + L VATD H+ Sbjct: 117 AVSLTDPSSTSILGDTLATAINKTIFAAGNDDLRPVMSGVFFQFSTDSLTF--VATDAHK 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +A ++ I+P+K + + +L ++ V + +ES +S S+ R Sbjct: 175 LVRYRREDLAA-SETAEFIMPKKPLNLLKSMLQGSETEVLIEYNESNAQFTFDSTSIICR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + +V RVSI S+ ++L ++ +L ++ + Sbjct: 234 LIDGKYPNYEAVIPKENPNKLVIARNQFLNSVRRVSIFSNKTTHQIRLKMAGAELNISAE 293 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D KA E + Y M I FN ++L+E+++N++ D+V Sbjct: 294 DIDYSNKADERLTCDYQGDDMQIGFNSRFLIEMLNNLNCDDV 335 >gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus Mu50] gi|15925707|ref|NP_373240.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus N315] gi|21281731|ref|NP_644817.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MW2] gi|49482255|ref|YP_039479.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MRSA252] gi|49484914|ref|YP_042135.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MSSA476] gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus COL] gi|87160973|ref|YP_492724.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193825|ref|YP_498610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266449|ref|YP_001245392.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus JH9] gi|150392482|ref|YP_001315157.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus JH1] gi|151220214|ref|YP_001331037.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus str. Newman] gi|156978333|ref|YP_001440592.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus Mu3] gi|161508268|ref|YP_001573927.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141517|ref|ZP_03566010.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253730401|ref|ZP_04864566.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733837|ref|ZP_04868002.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|254663936|ref|ZP_05143408.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424198|ref|ZP_05600627.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257426875|ref|ZP_05603277.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429511|ref|ZP_05605898.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257432158|ref|ZP_05608521.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus E1410] gi|257435119|ref|ZP_05611170.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257793540|ref|ZP_05642519.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781] gi|258411154|ref|ZP_05681433.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763] gi|258420942|ref|ZP_05683876.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719] gi|258438581|ref|ZP_05689804.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299] gi|258443963|ref|ZP_05692301.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115] gi|258446221|ref|ZP_05694381.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300] gi|258449120|ref|ZP_05697226.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus A6224] gi|258451365|ref|ZP_05699396.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948] gi|258454402|ref|ZP_05702370.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937] gi|262049434|ref|ZP_06022306.1| DNA polymerase III beta chain [Staphylococcus aureus D30] gi|262051883|ref|ZP_06024098.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3] gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|282894281|ref|ZP_06302511.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117] gi|282902633|ref|ZP_06310526.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282910028|ref|ZP_06317836.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912276|ref|ZP_06320072.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912916|ref|ZP_06320708.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282918070|ref|ZP_06325820.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|282920721|ref|ZP_06328440.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765] gi|282921292|ref|ZP_06329010.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282922544|ref|ZP_06330234.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282927752|ref|ZP_06335366.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102] gi|283959486|ref|ZP_06376927.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|284023039|ref|ZP_06377437.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus 132] gi|293497969|ref|ZP_06665823.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293511559|ref|ZP_06670253.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294849830|ref|ZP_06790570.1| DNA polymerase III [Staphylococcus aureus A9754] gi|295406866|ref|ZP_06816670.1| DNA polymerase III [Staphylococcus aureus A8819] gi|295429299|ref|ZP_06821921.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275685|ref|ZP_06858192.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MR1] gi|297209450|ref|ZP_06925848.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245901|ref|ZP_06929763.1| DNA polymerase III [Staphylococcus aureus A8796] gi|297589199|ref|ZP_06947840.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus MN8] gi|300911474|ref|ZP_07128923.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus TCH70] gi|304379950|ref|ZP_07362679.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60389826|sp|Q6GD88|DPO3B_STAAS RecName: Full=DNA polymerase III subunit beta gi|60389828|sp|Q6GKU3|DPO3B_STAAR RecName: Full=DNA polymerase III subunit beta gi|60392198|sp|P0A022|DPO3B_STAAM RecName: Full=DNA polymerase III subunit beta gi|60392199|sp|P0A023|DPO3B_STAAW RecName: Full=DNA polymerase III subunit beta gi|60392200|sp|P0A024|DPO3B_STAAU RecName: Full=DNA polymerase III subunit beta gi|60392205|sp|P99103|DPO3B_STAAN RecName: Full=DNA polymerase III subunit beta gi|81695636|sp|Q5HJZ4|DPO3B_STAAC RecName: Full=DNA polymerase III subunit beta gi|13699919|dbj|BAB41218.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus N315] gi|14245769|dbj|BAB56164.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus Mu50] gi|21203166|dbj|BAB93867.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus MW2] gi|49240384|emb|CAG39030.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49243357|emb|CAG41774.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285296|gb|AAW37390.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus COL] gi|87126947|gb|ABD21461.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201383|gb|ABD29193.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739518|gb|ABQ47816.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus JH9] gi|149944934|gb|ABR50870.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus JH1] gi|150373014|dbj|BAF66274.1| DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|156720468|dbj|BAF76885.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus Mu3] gi|160367077|gb|ABX28048.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725881|gb|EES94610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728140|gb|EES96869.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257273216|gb|EEV05318.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257276506|gb|EEV07957.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279992|gb|EEV10579.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257283037|gb|EEV13169.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus E1410] gi|257285715|gb|EEV15831.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257787512|gb|EEV25852.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781] gi|257840039|gb|EEV64504.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763] gi|257843132|gb|EEV67547.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719] gi|257848140|gb|EEV72132.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299] gi|257850847|gb|EEV74791.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115] gi|257855047|gb|EEV77990.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300] gi|257857553|gb|EEV80448.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus A6224] gi|257860895|gb|EEV83712.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948] gi|257863496|gb|EEV86256.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937] gi|259160210|gb|EEW45239.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3] gi|259162431|gb|EEW47001.1| DNA polymerase III beta chain [Staphylococcus aureus D30] gi|262073982|gb|ACY09955.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|269939528|emb|CBI47886.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus TW20] gi|282314765|gb|EFB45151.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282315707|gb|EFB46091.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282318355|gb|EFB48715.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|282323016|gb|EFB53335.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282323972|gb|EFB54288.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326094|gb|EFB56399.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282590512|gb|EFB95590.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102] gi|282594129|gb|EFB99117.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765] gi|282597092|gb|EFC02051.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282763326|gb|EFC03456.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117] gi|283469231|emb|CAQ48442.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus ST398] gi|283789078|gb|EFC27905.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|285815729|gb|ADC36216.1| DNA polymerase III beta subunit [Staphylococcus aureus 04-02981] gi|291096900|gb|EFE27158.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291465517|gb|EFF08049.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294823378|gb|EFG39807.1| DNA polymerase III [Staphylococcus aureus A9754] gi|294968331|gb|EFG44356.1| DNA polymerase III [Staphylococcus aureus A8819] gi|295127058|gb|EFG56702.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885911|gb|EFH24846.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177266|gb|EFH36519.1| DNA polymerase III [Staphylococcus aureus A8796] gi|297577710|gb|EFH96423.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus MN8] gi|300887653|gb|EFK82849.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus TCH70] gi|302749913|gb|ADL64090.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341530|gb|EFM07440.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436857|gb|ADQ75928.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus TCH60] gi|312828565|emb|CBX33407.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129545|gb|EFT85537.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus CGS03] gi|315195228|gb|EFU25616.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus CGS00] gi|315197920|gb|EFU28253.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus CGS01] gi|320141419|gb|EFW33262.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144402|gb|EFW36167.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323439697|gb|EGA97415.1| DNA polymerase III subunit beta [Staphylococcus aureus O11] gi|323443270|gb|EGB00887.1| DNA polymerase III subunit beta [Staphylococcus aureus O46] gi|329725853|gb|EGG62332.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 21172] gi|329731811|gb|EGG68171.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 21189] gi|329732483|gb|EGG68833.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 377 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|91214601|ref|ZP_01251574.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755] gi|91187028|gb|EAS73398.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755] Length = 364 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 94/334 (28%), Positives = 167/334 (50%), Gaps = 14/334 (4%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L+ LG +I NT+P+ + L + + L+I AS E + A+ G I V Sbjct: 5 LQTLGG---VINNNNTMPILDNFLFELDHNSLKISASDLETTMCSALDVESSDQGKIAVP 61 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPSTKEEEYVYS 129 A LL D ++ + ++F K + E++ G Y ++ +E FPS E Sbjct: 62 ARLLLDTLKSFPE-QPLTFHKLDNHTIEISSEQGK---YALAYANAEDFPSPVSIEDPSQ 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA-VAEVDI 188 L +L + +T FA +++R +NG+FF E L V TD H+L + DI Sbjct: 118 TILVGDILATAINKTIFATGNDDLRPVMNGVFFRFTPE--ALIFVGTDAHKLVKYSRTDI 175 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 A K I+P+K + + +L + V++ +ES + E+L ++ RL+DG++PN Sbjct: 176 KAD--KPAEFIMPKKPLNLLKGVLLGSEEDVQIEFNESNAKFSFENLELTCRLVDGKYPN 233 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KA 307 Y+ VIP N L ++ + +V RVSI S+ ++L ++ +L ++ ++ D KA Sbjct: 234 YEAVIPQENPNTLTIDRSLFLSSVRRVSIFSNKTTHQIRLKIAGAELNISAEDLDYSNKA 293 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 E + Y + I FN K+L E+++N++S+++ Sbjct: 294 EERLTCDYQGDDLTIGFNSKFLTEMLNNLNSEDI 327 >gi|303230644|ref|ZP_07317394.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514699|gb|EFL56691.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-049-V-Sch6] Length = 373 Score = 129 bits (325), Expect = 5e-28, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I ++++ + + ++ + K + + + + + +E++ + E+ I I A Sbjct: 1 MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V++ +++RKL G I K E G + I+ G S F L + +F Sbjct: 61 ILEPGTLVVASRYFQELIRKLP-GETIQLSKL-EDGNTLKITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVAT 176 ++ ++YV + S +K L++ T++A A+++ R G I + D ++ VAT Sbjct: 119 VEQIHDQDYV---NIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESL 235 D HR+AV +V I +I+P KA+ E+ R+L + + S+ K+ + ++I ES+ Sbjct: 176 DTHRMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESI 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDK 294 + RLI+G +P Y+ VIP D V+ AVDRVS+++ + ++ S ++ Sbjct: 236 YIISRLIEGTYPEYEKVIPAQFDSSAVVDRKEFAGAVDRVSLLAKDMSYNVIRYDWSEEQ 295 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ N ++G A E + V + P I FN +Y+ +I+ + + D + N Sbjct: 296 VTLSSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTGDN------IHMYLKQN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V IR +DN N YV+ P+R Sbjct: 350 GPVVIR---------QDNNPNYTYVVTPVR 370 >gi|239637287|ref|ZP_04678274.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603] gi|239597124|gb|EEQ79634.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603] gi|330685256|gb|EGG96917.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU121] Length = 377 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 186/376 (49%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I +IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEISIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 IDGEDIVDISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKL-EDTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 ++ RL++G +P+ + P + + +L +N A+DR S+++ +KLS Sbjct: 236 GHVNFISRLLEGHYPDTTRLFPENYEIKLGINNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + E + I FN KY+++ + I +DEV EV F Sbjct: 296 NEVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 352 -GTMKPFILKPKDDDS 366 >gi|302331774|gb|ADL21967.1| DNA-directed DNA polymerase beta subunit, DnaN [Staphylococcus aureus subsp. aureus JKD6159] Length = 377 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLKL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|326390363|ref|ZP_08211922.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993640|gb|EGD52073.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW 200] Length = 370 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 95/346 (27%), Positives = 178/346 (51%), Gaps = 12/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKSQVKFSGTDLDIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G I V A + ++VRKL +G +I E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEGDVKI----ESDSQNTVNVVCDSINFTIAGSDALEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + SF+L ++LK+L+ +T F +A E+ R L G+ F + + ++K AVA DG Sbjct: 117 EIPKVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGF 174 Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 R+A+ +E + + SI++P K + EI RIL +++ +++ + +++ IE+ Sbjct: 175 RMAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENT 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G F NY V+P E+ V L ++++R S+++ + +K + DK Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + GK +E + V ++I FN +YLL+ + I +E+ Sbjct: 294 ITVSSNSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEI 339 >gi|311748577|ref|ZP_07722362.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1] gi|126577099|gb|EAZ81347.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1] Length = 374 Score = 129 bits (325), Expect = 6e-28, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 175/344 (50%), Gaps = 8/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L ++ +P+ + L + + +L I AS + + I Sbjct: 1 MKFIVSSSALLKQLSAINGVVTTNPVVPILENFLFEIQESVLTITASDLQTSMITEIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I V A +L + ++ L + Q F + V IS + + L ++FP Sbjct: 61 AKEDGNIAVPARILIETLKNLPE--QPVTFSIDHDTYAVEISSDNGRYRLAGENATDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++++ VL + V T FA +++E+R + G++ +++ + VATDGHR Sbjct: 119 IPTVSNATTVDMSTEVLASAVSNTIFATSSDELRPAMTGVYINLSPTNTTF--VATDGHR 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L VD+ + A ++I+PRKA+ + L S++ V V ++S + S+ M Sbjct: 177 LVRYRRVDVASSDAA--NLIIPRKALNLLKSTLPSENVPVSVEFNQSNAYFKFNSIKMIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID FP+Y+NVIP N + ++ L ++ R++I ++ V+L L+ +L ++ Sbjct: 235 RLIDERFPDYENVIPAENPNLMTIDRQELLSSLKRIAIYANKTTHQVRLKLTGSELLISA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D +A E ++ ++ ++I FN K+L+E+++N+S EV Sbjct: 295 EDLDFSNEANERLSCEHDGEDIEIGFNAKFLVEMLNNLSCKEVT 338 >gi|56751505|ref|YP_172206.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 6301] gi|81298812|ref|YP_399020.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 7942] gi|56686464|dbj|BAD79686.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 6301] gi|81167693|gb|ABB56033.1| DNA polymerase III, beta subunit [Synechococcus elongatus PCC 7942] Length = 390 Score = 129 bits (325), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 96/392 (24%), Positives = 196/392 (50%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + PV +VLL A+ G L + A + I + Sbjct: 16 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 75 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V+ G+IT+ A LL DIV +L + + ++ + T +S G + ++ EF Sbjct: 76 AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 132 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + +L++S L + T FA + +E + L G+ + + L+ A TDG Sbjct: 133 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAA--TDG 190 Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESL 235 HRLAV + + A A ++ VP +A+ ++ R+++ + S ++L + + Sbjct: 191 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 250 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293 ++ R +DG++PNY +IP ++ + V+ L A++R+++++ + A++LSL ++ Sbjct: 251 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 310 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L + VD D+G E++ P++I FN +YL E + +++ ++ +L+S+ Sbjct: 311 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNT-----TDIQIQLNSN 365 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V + + V Y++MP+++ Sbjct: 366 TSPVVL---------SPLGPVKITYLVMPIQL 388 >gi|229816227|ref|ZP_04446537.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM 13280] gi|229808235|gb|EEP44027.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM 13280] Length = 367 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 104/389 (26%), Positives = 190/389 (48%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + + + + I +T+P+ VL++A DG+LE + S I I I A Sbjct: 1 MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119 VD G + + +L +IV+ L D A +SF EL +V I+ S F L + +FP Sbjct: 61 VDEEGQVVIPCKMLSNIVKTLPD-APVSF----ELAERQVTITCERSTFRLNTLDAGDFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S EL +++L +V R +T++ R LNG++ + ++L VATD + Sbjct: 116 EFPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSY 173 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV + + + + + VP A + L I + S+ + +++++ + + Sbjct: 174 RLAVCDTQVETSSLEGSFELNVPADAFNDALAITGGQ-GSILIGSTDTQVVFVAGNTTYV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLC 296 R I+G +PNY+ ++P S ++++ L A+ RVS ++ AVK +S+ + ++ Sbjct: 233 ARRIEGMYPNYKALLPASCATTVKIDVAALTSALKRVSTVAQAN-SAVKFDISVETGQMM 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + D A ++ V I FNY Y+ ++ +S ++ E+ L S N + Sbjct: 292 LSAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQA 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K+N Y++MP+RI Sbjct: 348 GVFKSYD---------KINYLYLVMPVRI 367 >gi|302336539|ref|YP_003801746.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084] gi|301320379|gb|ADK68866.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084] Length = 367 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 101/388 (26%), Positives = 190/388 (48%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V +S + + L + + +T+P+ +L+ A +G L + + I + I A Sbjct: 1 MKFSVSQSSLSQALAVVSKGMGSNSTLPILSGILITAAEGTLTFQTTDLTINVRHRIAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS VS +L +IV+ L D A +SF + V+IS S F L + S+FP Sbjct: 61 VEEAGSTVVSGKILMNIVKTLPDAA-VSFEGGERV---VSISCDKSTFRLNTLDPSDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + EL SS+L +V++ + + + R L+G+ + E ++L VATD +R Sbjct: 117 FPQFALGRTIELPSSLLSEMVDKVYKVTSRDTSRPILSGVLLSVEENTIRL--VATDSYR 174 Query: 181 LAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + A + IVP ++L L S V + ++S++ + + Sbjct: 175 LAVCDSNAETSSADEAFQTIVPGMTFHDVLT-LPSMTEKVLIGTTDSQVVFVFGNTTYIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM-- 297 R I+G FPNY+ ++P + ++VN + A+ RVS+++ +V++ + +D M Sbjct: 234 RKIEGNFPNYKQLLPADCNTSVKVNVSEFASALKRVSVIALAN-PSVRVDIDTDGGVMKL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +PD G++ E + V M I NY Y+ + ++ ++++ + E+ L + + Sbjct: 293 SASSPDQGESTELLPVDVEGQSMSIALNYHYVFDCVNAAANEKEITLEL---LSAMQPGI 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F K+N Y+LMP+R+ Sbjct: 350 F----------KSYAKINYLYLLMPVRM 367 >gi|255037469|ref|YP_003088090.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] gi|254950225|gb|ACT94925.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] Length = 374 Score = 129 bits (324), Expect = 7e-28, Method: Compositional matrix adjust. Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 13/367 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L ++ +P+ + LL + L + AS + + I Sbjct: 1 MKFVVSSSVLLKQLSAINGVVSTNPIVPILENFLLTLDGNSLTVTASDLQTVMITEIEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I + A LL D +R L + GTE+ +G + L +FP Sbjct: 61 SSEKGAIAIPAKLLLDTLRGLPEQPITLQVNAETFGTEIISDNG--RYKLSGENPIDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T S + +S L + + T FA +T+++R + G+F + E VATDGHR Sbjct: 119 TPVVNRGQSVDFSSVALGSAISNTLFATSTDDLRPAMTGVFVQMGAESATF--VATDGHR 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L DI + I S+I+ RKA+ + L S+D VK + S + ++ M Sbjct: 177 LVRYRRTDIKSDIDT--SMIIQRKALNLLKSCLPSEDVPVKAEFTSSNAFFSFGNIRMIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID FP+Y+N IP +N L +N + ++ R+SI S+ V++ ++ + L ++ Sbjct: 235 RLIDERFPDYENAIPTNNPNTLTINRLEILSSLRRISIYSNRTTHQVRMKMALNDLVISA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ D +A E + YN M+I FN K+L+E++ N+SS + F L + N + Sbjct: 295 EDLDYSNEANERLMCEYNGDDMEIGFNAKFLIEVLGNLSS-----KTITFELSAPNRAGL 349 Query: 359 IRGKDKD 365 I D++ Sbjct: 350 IIPVDQE 356 >gi|317131010|ref|YP_004090324.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3] gi|315468989|gb|ADU25593.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3] Length = 369 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 10/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + E L A R + K ++P +L++ D + ++A E+ I+ I A Sbjct: 1 MQFRCNTKKLAEALAVAGRAVSSKTSMPALEGILIRTGDHQIILQAYDLELGISTTIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G I ++A + D+VRKL G + +++L T V + G + F + P EFP Sbjct: 61 CRSDGEIVLNAKIFADMVRKLP-GDTVEVKSDDKLLTIV--TSGAAEFTILGTPAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S EL ++L +++ +T FA++T+E GI F + E+ L+L VA DG R Sbjct: 118 LPSLSDGASIELPENLLSSMIRQTIFAISTDESNPIHTGILFELQEKTLRL--VAVDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ + V Q + +VP K + EI ++L S+ D + V++ E I +I ++ Sbjct: 176 LAI-RTEPVTQDGSF-AFVVPGKTLAEISKLLHSESDEKITVTVGEKHILFDIAGYTVIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMT 298 RL++G+F +Y++V+ + RVN L ++DR S++ + R+++ V+ SD++ + Sbjct: 234 RLLEGQFLDYKSVLGGNTTAHARVNARALTDSIDRASLLITDRLKSPVRCIFESDRIRIK 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +GK + ++ + P ++ FN +YL++ + DEV Sbjct: 294 CSS-SIGKVYDEVSAAFEGEPCEMGFNNRYLMDALKAADCDEV 335 >gi|1706497|sp|P52023|DPO3B_SYNE7 RecName: Full=DNA polymerase III subunit beta gi|974615|gb|AAA75109.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 7942] Length = 375 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 96/392 (24%), Positives = 196/392 (50%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + PV +VLL A+ G L + A + I + Sbjct: 1 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V+ G+IT+ A LL DIV +L + + ++ + T +S G + ++ EF Sbjct: 61 AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + +L++S L + T FA + +E + L G+ + + L+ A TDG Sbjct: 118 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAA--TDG 175 Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESL 235 HRLAV + + A A ++ VP +A+ ++ R+++ + S ++L + + Sbjct: 176 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293 ++ R +DG++PNY +IP ++ + V+ L A++R+++++ + A++LSL ++ Sbjct: 236 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L + VD D+G E++ P++I FN +YL E + +++ ++ +L+S+ Sbjct: 296 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNT-----TDIQIQLNSN 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V + + V Y++MP+++ Sbjct: 351 TSPVVL---------SPLGPVKITYLVMPIQL 373 >gi|311070649|ref|YP_003975572.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942] gi|310871166|gb|ADP34641.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942] Length = 378 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 189/354 (53%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL + + +N+ T I G + F L Sbjct: 61 EGDKEIITIEQPGSIVLQARFFSEIVKKLP-MSTVEIEVQNQYLT--IIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ A++DI + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CIATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDNQELVDIVITETQVLF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLS 293 Query: 290 LS-SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++ + ++ ++P++GK +E++ E ++I F+ KY+L+ + + E+ Sbjct: 294 AKPAESIEISSNSPEIGKVVEAVLADQIEGEELNISFSPKYMLDALKVLEGAEI 347 >gi|159902541|ref|YP_001549885.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9211] gi|159887717|gb|ABX07931.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9211] Length = 397 Score = 129 bits (324), Expect = 8e-28, Method: Compositional matrix adjust. Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 17/355 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV ++LL A+ G + +G ++ I ++ Sbjct: 13 MKLVCSQSELNSALQLVSRAVASRPTHPVLANILLTADAGTGRLSLTGFDLNLGIQTSLT 72 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+V G+ T+ A L +IV KL + I+ + ELG +VN++ + ++ +F Sbjct: 73 ASVEVSGATTLPAKLFGEIVSKLSSDSPINLVSD-ELGEKVNLTSKSGTYQMRGLNADDF 131 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + S ++ + N ++ T FA +++E + L G+ H+ + L A ATDG Sbjct: 132 PELPLVQTGASLQINPLIFANALKSTLFASSSDESKQILTGV--HLIFDGNILQAAATDG 189 Query: 179 HRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 HRLAV ++ + + + +P K++ EI R + + + K+SL + Sbjct: 190 HRLAVLNLEDAINLNSSTNLNTNDKIEVTLPAKSLREIERFIGNYKNEEKISLFYDSGQV 249 Query: 231 NIESLS--MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 +L+ ++ R+++G++PNY +IP S L + A++R+++++ +K+ Sbjct: 250 VFTALNQVVTTRILEGDYPNYNQLIPESFSNILEFDRKPFISALERIAVLADQHNNVIKI 309 Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 S SSD + +T D D+G +ES+ V +N I FN +YLLE + D++ Sbjct: 310 SKEPSSDLVKITADAQDVGSGVESIPVKFNGDNFQIAFNVRYLLEGLRVFEEDKI 364 >gi|62185060|ref|YP_219845.1| DNA polymerase III subunit beta [Chlamydophila abortus S26/3] gi|62148127|emb|CAH63884.1| DNA polymerase III, beta chain [Chlamydophila abortus S26/3] Length = 366 Score = 129 bits (324), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 104/386 (26%), Positives = 191/386 (49%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV H+L++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHMLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTI--ANGTATVVGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++++ + I+P KAV EI++ L S+DS + L +++I + + + Sbjct: 175 RLAKTDIEVSLDKSFTGDYIIPIKAVEEIIK-LCSEDSEASIFLDQAKIAVECGNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI + L ++ L + +V++ ++ +VK + + +L +T Sbjct: 234 KLLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V RL S+S + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G DS + +V+MPMR+ Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363 >gi|258423236|ref|ZP_05686128.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635] gi|257846565|gb|EEV70587.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635] Length = 377 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 IDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|289610240|emb|CBI60295.1| unnamed protein product [Sordaria macrospora] Length = 162 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 62/146 (42%), Positives = 95/146 (65%) Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 KMP +IVPRK V E+ ++L D SV VSLS S+I ++ ++ +LIDG FP+Y VI Sbjct: 11 KMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGSKIRFDLGQAILTSKLIDGTFPDYSRVI 70 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313 P +NDK L+++ + VDRVS +++ + +AVK++L DK+ ++V +P+ G A E + Sbjct: 71 PTANDKLLKLDPKSFMAGVDRVSTIATEKTRAVKMALDRDKITLSVTSPENGAAAEEVPG 130 Query: 314 YYNECPMDICFNYKYLLEIIDNISSD 339 Y P +I FN +YLL+I+ I SD Sbjct: 131 EYAALPFEIGFNSRYLLDILGQIDSD 156 >gi|291541863|emb|CBL14973.1| DNA polymerase III, beta subunit [Ruminococcus bromii L2-63] Length = 368 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 93/342 (27%), Positives = 179/342 (52%), Gaps = 9/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ RSD+ + + R + K +IP VL++A L I EI IT I A+ Sbjct: 1 MKISCLRSDLATAISNVSRAVSTKASIPALEGVLIKAYGNTLNISGYNLEIGITTDIEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I VSA L DIVR+L + +I F + +E I+ G N+ + E+P Sbjct: 61 IKEEGEIVVSAKLFLDIVRRLPE--EIVFIETDERMV-TYIACGKVNYQIVGMSSVEYPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L + +L++++ +T +A++ + G + I + K+ A+ DG+R Sbjct: 118 LPSFEQTDRITLNAKILRDMIRQTVYAVSENTAKPIYTGSLYEIEDGVFKIIAI--DGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ ++ ++ +VP K E+L++L+ + + ++ + + I I++ + R Sbjct: 176 MAIRSENVDSE--SKNRFVVPGKTQHEVLKLLTDDEENTEIIIGQRHITFKIKNYRIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTV 299 LI+G F Y++ IP E+ +N + AV+R+S++++ RIQ+ V+ S D++ ++ Sbjct: 234 LIEGTFIEYKSAIPKETKTEVVINTRTIIDAVERMSLLNNDRIQSPVRCIFSDDEIKLSC 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +G+A + ++V ++I FN +YLL+ + N +DE+ Sbjct: 294 TSA-VGRANDVISVPIIGESVEIGFNNRYLLDALKNADTDEI 334 >gi|28376976|ref|NP_783868.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum WCFS1] gi|254555171|ref|YP_003061588.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum JDM1] gi|300769107|ref|ZP_07078996.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179193|ref|YP_003923321.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269807|emb|CAD62704.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum WCFS1] gi|254044098|gb|ACT60891.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum JDM1] gi|300493347|gb|EFK28526.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044684|gb|ADN97227.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum subsp. plantarum ST-III] Length = 379 Score = 129 bits (323), Expect = 9e-28, Method: Compositional matrix adjust. Identities = 92/345 (26%), Positives = 172/345 (49%), Gaps = 18/345 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + R I K TIP+ + L N + + S +I I IPAS Sbjct: 1 MKFTINRSAFIKELNNVQRAISSKTTIPILTGLKLDVNTDAITLTGSDADISIETTIPAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GSI + A +IV+KL +D ++ G + I+ G ++F + Sbjct: 61 DDNNTLVVEDAGSIVLPARFFSEIVKKLPEDTMTVNVVD----GFQTQITSGAASFTING 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P E + + LA VLK L+ +T A++ +E R L G+ F + + + Sbjct: 117 LDPENYPHLPEIDTTNTITLAGDVLKELIGQTVIAVSNQESRPILTGVHFIL--ANGEFL 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRL+ + + +I+P K++ E+ R++ + V++ LSE+++ + Sbjct: 175 AVATDSHRLSQRRIKLPEANNANYDVIIPGKSLTELSRMIGDNNPDVQMRLSENQVLFVL 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + S RL++G +P+ +IP ++ + ++ L A++R S++S R V+ S++ Sbjct: 235 GNTSFYSRLLEGNYPDTSRLIPKESNTTVEISAPALSAAIERASLLSHESRNNVVRFSVN 294 Query: 292 SDKLCMTV--DNPDMGKAIESMN-VYYNECPMDICFNYKYLLEII 333 +T+ ++PD+G+ E + + ++I FN Y+ E + Sbjct: 295 PTDKTITIFGNSPDVGEVTEQLQPTDLSGDELEISFNPDYMKEAL 339 >gi|317126743|ref|YP_004093025.1| DNA polymerase III subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315471691|gb|ADU28294.1| DNA polymerase III, beta subunit [Bacillus cellulosilyticus DSM 2522] Length = 380 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 100/358 (27%), Positives = 182/358 (50%), Gaps = 20/358 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++ R ++ + H + I + TIPV + ++A+ + + S +I I IP Sbjct: 1 MKFSINRDQFVQSVQHVSKAISPRTTIPVLTGIKIEASFDGVTLTGSDSDISIESFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL +D ++S E + T + G S F L Sbjct: 61 DEEIQNVELEQPGSIVLPARFFAEIVKKLPEDTIELSV-SEQFVTT---LKSGSSVFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P E E F+L + +LKN++ +T FA++T E R L G+ + I E+ L Sbjct: 117 GLDPNEYPRLPEIEEDNVFKLKTDLLKNIIRQTVFAVSTVETRPILTGVHWAI--EEGTL 174 Query: 172 CAVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 ATD HRLA+ A+ + ++++P K++ E+ +IL + V + ++E++I Sbjct: 175 ACTATDSHRLAMRNAKAETNTNDLSFSNVVIPGKSLNELSKILDDNEEWVDIIVTENQIL 234 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 ++L RL+DG +P N+IP ++ +++ QA++R ++S + V L Sbjct: 235 FKAKNLLFFSRLLDGNYPATNNMIPTNSKTNVKLETKKFMQAIERALLLSRDGKNNVVNL 294 Query: 289 -SLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 +LS+ L +T P++GK E + + +N + I FN K +++ + I S EV D Sbjct: 295 KTLSNTHLEITSVTPEVGKVTEDVATLDFNGEELRISFNGKNIIDALRVIDSTEVTID 352 >gi|225862059|ref|YP_002747437.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|300118808|ref|ZP_07056528.1| DNA polymerase III subunit beta [Bacillus cereus SJ1] gi|225787164|gb|ACO27381.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|298723776|gb|EFI64498.1| DNA polymerase III subunit beta [Bacillus cereus SJ1] Length = 379 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ + I + + + +++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|33864540|ref|NP_896099.1| DNA polymerase III subunit beta [Synechococcus sp. WH 8102] gi|33632063|emb|CAE06516.1| DNA polymerase III beta subunit [Synechococcus sp. WH 8102] Length = 385 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 182/357 (50%), Gaps = 19/357 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + ++ E E G +V ++ ++ ++ P ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLASDSPLTLTTE-ESGEQVQLNSLSGSYQMRGMPADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L +S L ++ T FA + +E + L G+ H++ D L A ATDG Sbjct: 120 PDLPMVESGLTLKLQASGLVQALKGTLFASSGDEAKQLLTGV--HLSFTDTNLEAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227 HRLAV +V+ Q A + + +P +++ E+ R+++ S +SL R Sbjct: 178 HRLAVLQVNDALQAAAEGTEGEGAAFAVTLPARSLREVERLVAGWRSEDPISLFCDRGQV 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + L + + S R ++G +PNY+ +IP + L ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYRQLIPDGFSRTLTMDRRALVGALERIAVLADQHNNVVK 296 Query: 288 LSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 S S + ++ D D+G ES+ + + I FN +Y+L+ + ++ D VV Sbjct: 297 FSSQPESGVVLISADAQDVGSGSESLAAELSGDAIQIAFNVRYMLDGLKAMAGDRVV 353 >gi|78183585|ref|YP_376019.1| DNA polymerase III subunit beta [Synechococcus sp. CC9902] gi|78167879|gb|ABB24976.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9902] Length = 385 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/357 (26%), Positives = 180/357 (50%), Gaps = 19/357 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ E E G +V ++ ++ ++ P ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L ++ T FA + +E + L G+ N + L+ A ATDG Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227 HRLAV +V+ + A ++ +P +++ E+ R+++ S VSL R Sbjct: 178 HRLAVLQVEDALEDAAANSDDAAEGFAVTLPARSLREVERLMAGWRSDDPVSLFCDRGQV 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + L + + S R ++G +PNY +IP ++ L ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVK 296 Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D+ + ++ D D+G ES+ + I FN +YLL+ + + SD VV Sbjct: 297 FTSQPDEGVVQISADAQDVGSGSESLAANLTGDAIQIAFNVRYLLDGLKAMGSDRVV 353 >gi|229917454|ref|YP_002886100.1| DNA polymerase III subunit beta [Exiguobacterium sp. AT1b] gi|229468883|gb|ACQ70655.1| DNA polymerase III, beta subunit [Exiguobacterium sp. AT1b] Length = 379 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 180/364 (49%), Gaps = 39/364 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M +T++R ++ + + + + TIP+ + L+A+ L + S EI I IP Sbjct: 1 MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106 + GS+ ++A L +IV+KL NE+ EV+ I G + Sbjct: 61 EGGMELIQIQRAGSVVLNARFLGEIVKKL---------PTNEVTLEVSPNFMTRIESGQA 111 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 F+L E+P E F L + +LK ++ +T FA++++E R L G+ F + Sbjct: 112 EFHLNGLDPDEYPRLPELASDRRFYLPADLLKTIIRQTSFAVSSQETRPVLTGVNF--SA 169 Query: 167 EDLKLCAVATDGHRLAVAEV------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 E L VATD HRLA+ D+ Q +++VP +++ E+ ++L ++ ++ Sbjct: 170 EKGFLTCVATDSHRLALRRARFETDNDLTFQ-----NVVVPGRSLNELAKLLDREELPIE 224 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + L++ +I ++++S RL+DG +P+ +IP +R+N QA+DR S+++ Sbjct: 225 IVLTDQQILFRMKNISFFSRLLDGAYPDTSRLIPEEYRTAVRMNAKEFLQAIDRASLLAR 284 Query: 281 VRIQAVKLSLSSDKLCMTVD--NPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNIS 337 V ++ DK + V +P++GK E +++ E + I FN K++++ + + Sbjct: 285 ADRNNVIKFVAEDKTAVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALD 344 Query: 338 SDEV 341 + E+ Sbjct: 345 ASEI 348 >gi|150007344|ref|YP_001302087.1| DNA polymerase III subunit beta [Parabacteroides distasonis ATCC 8503] gi|255014025|ref|ZP_05286151.1| DNA polymerase III beta chain [Bacteroides sp. 2_1_7] gi|256839635|ref|ZP_05545144.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13] gi|262382081|ref|ZP_06075219.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B] gi|298375332|ref|ZP_06985289.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] gi|301310654|ref|ZP_07216593.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3] gi|149935768|gb|ABR42465.1| DNA polymerase III beta chain [Parabacteroides distasonis ATCC 8503] gi|256738565|gb|EEU51890.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13] gi|262297258|gb|EEY85188.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B] gi|298267832|gb|EFI09488.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] gi|300832228|gb|EFK62859.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3] Length = 374 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/349 (27%), Positives = 169/349 (48%), Gaps = 16/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + +L L ++I KN++P+ L L + AS E + S Sbjct: 1 MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNTLTVTASDAETRLV----TS 56 Query: 61 VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 VDV G VSA +L D +++L + + L ++ +G NF Q Sbjct: 57 VDVMNAQGAGLFAVSAKILLDPLKELPEQPLTFDINDENLEIFIHFQNGKYNFIGQK--G 114 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P K + S + + +L N + R+ FA A +E+R +NG++F I+ +DL V Sbjct: 115 DTYPQQKPLNDNAISISMDAQMLLNGISRSLFATADDELRPVMNGVYFDIHTDDLTF--V 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+DGH+L V ++ + + S I+P+K + +L+ + V + ++ ++ + Sbjct: 173 ASDGHKL-VRLRNLAVKSPERASFILPKKPANLLKNLLAKESEQVLIKFDDNNAYITCTN 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 M RLI+G +PNY +VIP N ++ ++ + A+ RVS+ S+ VKL L Sbjct: 232 FEMVCRLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLHLKDSL 291 Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ + D + E V ++ + I F YL+EI+ NISS+EVV Sbjct: 292 ITVSAQDIDFSTSAEERIVCQFDGTELSIGFKATYLIEILGNISSEEVV 340 >gi|206975877|ref|ZP_03236788.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217957583|ref|YP_002336125.1| DNA polymerase III subunit beta [Bacillus cereus AH187] gi|222093776|ref|YP_002527823.1| DNA polymerase iii subunit beta [Bacillus cereus Q1] gi|229142239|ref|ZP_04270763.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26] gi|229199686|ref|ZP_04326329.1| DNA polymerase III subunit beta [Bacillus cereus m1293] gi|206745971|gb|EDZ57367.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217065811|gb|ACJ80061.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|221237821|gb|ACM10531.1| DNA polymerase III, beta subunit [Bacillus cereus Q1] gi|228583781|gb|EEK41956.1| DNA polymerase III subunit beta [Bacillus cereus m1293] gi|228641257|gb|EEK97564.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26] gi|324323996|gb|ADY19256.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 379 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 185/355 (52%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVNQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TGIATDSHRLALRKAKIEG-IADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293 Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 S L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 294 STLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|15893300|ref|NP_346649.1| DNA polymerase III subunit beta [Clostridium acetobutylicum ATCC 824] gi|15022819|gb|AAK77989.1|AE007513_2 DNA polymerase III beta subunit [Clostridium acetobutylicum ATCC 824] gi|325507409|gb|ADZ19045.1| DNA polymerase III subunit beta [Clostridium acetobutylicum EA 2018] Length = 366 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 104/387 (26%), Positives = 191/387 (49%), Gaps = 26/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK E++ + E + A + + K+T+PV +L+ + L + S ++ I I Sbjct: 1 MKFICEKNILQEAIITAQKAVTGKSTMPVLQGILMSVQNNELTLIGSDIDLSIETKINVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A LL +I+RKL + +I + N V I+ S L ++FP Sbjct: 61 VLEEGKVVLDARLLSEIIRKLPNSKVEIQTIENNC----VEITCNKSKLTLVYLNPNDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E + F++ LK +++ T FA+A +E R L G+ F I +D KL VA DG+ Sbjct: 117 SLPEIDENSIFKINQKTLKTMIKGTIFAIAQDETRPILTGVLFEI--KDSKLNLVAIDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ I + + + ++P K + E+++IL D V ++ + + I N+ + + Sbjct: 175 RLALRSQYIDNETS--INAVIPGKTLNEVIKILED-DGDVNITFTSNHILFNLGNTKIIS 231 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 RL++GEF Y ++IP + + L ++R S+M+ +KL + D + +T Sbjct: 232 RLLEGEFIKYNSIIPEEYNLNIVARKEELLDCIERASLMAKDGNNNLIKLDIEDDVMIIT 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +G E +N+ P+ I FN KYL++++ ++ +E+V SS S Sbjct: 292 -SNSQLGNVREEINIILQGQPLKIAFNSKYLIDVLKIMNQ-----EEIVMNFSSSISPCI 345 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K+ D ++ Y+++P+R+ Sbjct: 346 IKNKEND---------DSTYLILPVRL 363 >gi|229099917|ref|ZP_04230840.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29] gi|229100790|ref|ZP_04231610.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28] gi|229118980|ref|ZP_04248325.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3] gi|228664505|gb|EEL20001.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3] gi|228682629|gb|EEL36686.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28] gi|228683532|gb|EEL37487.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29] Length = 381 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/359 (27%), Positives = 186/359 (51%), Gaps = 27/359 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDANISIESFIPVE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 EDGKEIVEIGQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L + Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-I 175 Query: 172 CAVATDGHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 C +ATD HRLA+ + I +A A ++++P K++ E+ +IL + V + ++E + Sbjct: 176 C-IATDSHRLALRKAKIEGYNIAD-AFQANVVIPGKSLNELSKILDESEEMVDIVITEYQ 233 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + + L RL++G +P+ +IP + ++ VN QA+DR S+++ R V Sbjct: 234 VLFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVV 293 Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 KLS L L ++ ++P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 294 KLSTLEQKMLEISSNSPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|310639473|ref|YP_003944231.1| DNA polymerase iii, beta subunit [Paenibacillus polymyxa SC2] gi|309244423|gb|ADO53990.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa SC2] Length = 380 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 196/396 (49%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKI++ ++ + E + H + I + TIP+ + L N + + AS +I I IP Sbjct: 1 MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + A +I++KL +I +++ T IS G + + Sbjct: 61 DGDQTVVQIEQPGSVVLPAKFFVEIIKKLP-SQEIRMEVKDQFQT--FISSGATEIQIVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + +LKN++++T F+++T E L G+ +++ E +LK Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + ++ + ++++ K + E+ RI+ ++ V + ++++++ Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 ++ + R++DG +P+ +IP S EL V+ +L +++DR ++S + VK+ S Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ + ++GK E +NV E P+ I FN KY+L+++ I S +++ Sbjct: 296 LENGDLEISSSSSELGKVREEVNVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D NA Y+++P R Sbjct: 351 AFTGIMSPIILKPADSS---------NALYIILPYR 377 >gi|229083316|ref|ZP_04215678.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44] gi|228699991|gb|EEL52614.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44] Length = 381 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 181/356 (50%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIILQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFQIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIESHTISNEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ ++P++GK +E + E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEEQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDSTEI 350 >gi|218297058|ref|ZP_03497735.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] gi|218242613|gb|EED09150.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] Length = 371 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 87/349 (24%), Positives = 177/349 (50%), Gaps = 21/349 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ ++ + E + R+I +++ P+ ++ L A L + S E+++ +PA Sbjct: 1 MRVTLPKNLLAERIALLERVIPSRSSNPLLTYLGLAAEKDALVLFGSNGEVDLEVRLPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115 ++ G + + + +VR L G + E LG+E+ ++ G L + +PE Sbjct: 61 LEGEGRYLIPSQPFFQLVRSL-PGETV----ELSLGSELALASGRFTTRLALAPMEGYPE 115 Query: 116 SEFPSTKEEEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP + E ++ + + L+ + + +A + EE R G+ ++ + A Sbjct: 116 LLFPDLEGGEGAFTQRAQFLAEELQRALSQVRYAASNEEYRAIFRGVQLEFSDRGFR--A 173 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VA+DG+RLA+ +++ + +VP ++V E++R+L S + V ++L + L + Sbjct: 174 VASDGYRLALFDLERPQPFTR--KAVVPARSVDELVRVLRSAEGEVVLALGPGTLGLAVR 231 Query: 234 ----SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 +L M+VRL++GEFP+Y+ VIP + ++ R+A+ RVS+++ + V L Sbjct: 232 QEEGALRMAVRLMEGEFPDYERVIPKEFPLKAALDVEPFREALKRVSVLADKQNHRVDLF 291 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 L ++ ++ + D GK E + V PM + +N +YLLE + +S Sbjct: 292 LEEGRVLLSAEG-DYGKGQEEIFVSLEGAPMSLAYNARYLLEALAPLSG 339 >gi|282852315|ref|ZP_06261657.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1] gi|282556057|gb|EFB61677.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1] Length = 376 Score = 129 bits (323), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF T+ I ++ F + + Sbjct: 61 ADLVVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVRESFQTK--IVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK++L Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E ++ E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRASITDSII 345 >gi|88697514|gb|ABD48451.1| DnaN [Morganella psychrotolerans] Length = 193 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 75/200 (37%), Positives = 115/200 (57%), Gaps = 9/200 (4%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ + G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVSLVQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141 DGAQIS EL G + + G S F L + P S+FP+ + + +F L + LK L+ Sbjct: 61 DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLI 116 Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201 E T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI + S+IVP Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPDH-SVIVP 173 Query: 202 RKAVGEILRILSSKDSSVKV 221 RK V E++R+L ++ +K+ Sbjct: 174 RKGVIELMRLLDGGEALLKL 193 >gi|42518086|ref|NP_964016.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533] gi|41582370|gb|AAS07982.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533] Length = 376 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK++L Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E + E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRASITDSII 345 >gi|329666393|gb|AEB92341.1| DNA polymerase III, beta chain [Lactobacillus johnsonii DPC 6026] Length = 376 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK++L Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E + E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRASITDSII 345 >gi|46447339|ref|YP_008704.1| DNA polymerase III subunit beta [Candidatus Protochlamydia amoebophila UWE25] gi|46400980|emb|CAF24429.1| putative DNA polymerase III, beta chain [Candidatus Protochlamydia amoebophila UWE25] Length = 403 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 102/386 (26%), Positives = 194/386 (50%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L+ ++ +K TIP+ + L++A + L + A+ + I A Sbjct: 30 MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTEAK 89 Query: 61 VDVCGSITVSAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS T+ A L +VR+L +IS NE+ T I G S F L ++++P Sbjct: 90 ILEEGSTTLPAKRLSQLVRELTAVNVEIST-NTNEITT---IIAGSSRFKLNGMSKTDYP 145 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + ++FE+ S LK+L+ RT FA++ E+ RY L G+F I + + TDG Sbjct: 146 SLPDLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITF--IGTDGK 203 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A+ I + I+P KAV EIL+ L+ + VK+SL ++ + + + Sbjct: 204 RLARAKGVIDNDPSFSGQAIIPIKAVDEILKNLTD-EGEVKISLMADKVAIEANQMRILT 262 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ G++P+ VIP ++ + ++ L + ++S+ ++ +V+ + +L +T Sbjct: 263 KLLSGDYPDVNRVIPEKSEIIVTLHREELSSLLRQISLFTADHNHSVRFTFIPGELKLTA 322 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D+G+ SM V Y+ ++I FN + ++I+ + + V ++ D+ N + Sbjct: 323 NTMDIGEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKGETV----IMGLTDAYNPGIIT 378 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N+ D + +V+MPMR+ Sbjct: 379 --DSAELANSLD--ASPLFVIMPMRL 400 >gi|268318564|ref|YP_003292220.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785] gi|262396939|emb|CAX65953.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785] Length = 376 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK++L Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E + E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRASITDSII 345 >gi|149275921|ref|ZP_01882066.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39] gi|149233349|gb|EDM38723.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39] Length = 374 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 172/343 (50%), Gaps = 6/343 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + DG L I A+ + +T ++ Sbjct: 1 MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGSLTISATDLQTSMTTSLAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V A +L D ++ L D Q F ++ + IS GD + L +FP Sbjct: 61 SKEGGKVAVPAKILLDTLKTLPD--QPVSFNIDDSSFSIEISAGDGKYKLSGENGDDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L +SVL + +T FA++ +E+R + G+F ++E+++ VATD H+ Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSNDELRPAMTGVFCQLSEQNITF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + ++ K S I+P+KA+ + L S D +V V + + +++++ R Sbjct: 177 L-VRYRRMDSKGDKSSSFILPKKALTLLKAALPSTDVNVSVDYNATSAFFKFDNINLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ + RV I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D +A E ++ Y ++I FN ++L+E++ N+S +EV Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNARFLIEMLSNLSGEEVT 338 >gi|314934959|ref|ZP_07842318.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87] gi|313652889|gb|EFS16652.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87] Length = 377 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 96/376 (25%), Positives = 186/376 (49%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVEISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ V+KN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVIKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQL-EDTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L + + A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGIINGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + E + I FN KY+++ + I +DEV EV F Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 352 -GTMKPFILKPKDDDS 366 >gi|327404393|ref|YP_004345231.1| DNA polymerase III subunit beta [Fluviicola taffensis DSM 16823] gi|327319901|gb|AEA44393.1| DNA polymerase III, beta subunit [Fluviicola taffensis DSM 16823] Length = 372 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 167/342 (48%), Gaps = 7/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V +++L L ++ NT+P+ + L D L I AS E + + Sbjct: 1 MNFIVSSTNLLRHLQSISGVLSTSNTLPILDNFLFTITDSQLIISASDLETTMQTTMEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + A +L D+++ L D Q FK ++ EV I++ + + F EFP Sbjct: 61 ATDSGKVAIPAKMLLDVLKNLPD--QPCTFKIDDSKYEVEIAYDNGKSKMVGFNGEEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T E S ++ ++ + + +T FA +++R ++G++ + D+ VATD H+ Sbjct: 119 TPTIENSTSIRISGEIISSAINKTLFAAGNDDLRPVMSGMYCQFSPSDITF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V Q + I+P+K + +L+ D V++ ++S + + R Sbjct: 177 L-VRYRRSDGQATNGAAFILPKKPLN-LLKSNLRGDEEVQLEYTDSNAIFTFNDIVLMCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N L V+ A+ RVSI ++ VKL ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNILIVDRMQFLGAIKRVSIFANKTTHQVKLKIAGSELNVSAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D +A E + Y+ ++I FN ++L+E+++NI + EV Sbjct: 295 DLDFSNEANERLTCNYDGTDIEIAFNSRFLMEMLNNIDAAEV 336 >gi|149182289|ref|ZP_01860768.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] gi|148849981|gb|EDL64152.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] Length = 378 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 178/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R D+++ +G + + + TIP+ + + AN+ + + S +I I IP Sbjct: 1 MKFVIQRDDLVQSVGDVMKAVTSRTTIPILTGIKIIANEEGVTLTGSDSDISIESFIPKE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+V G I + A +IV+KL D +I +N L T I G + F L Sbjct: 61 EEGNEIVEVLETGGIVLQAKFFSEIVKKLPMDTVEIEV--QNHLQT--VIRSGKAEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + E + ++ + +LK ++ +T FA++T E R L G+ + + E+ +L Sbjct: 117 GLDPEEYPHLPQIEEGNALKVPTDLLKTMIRQTVFAVSTSETRPILTGVNWKV--ENGEL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + + K +I++P K++ E+ +IL V++ ++++++ Sbjct: 175 NCIATDSHRLAMRKAPLENDNGKEYNIVIPGKSLTELSKILDDNSELVEIVITDNQVLFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + L RL++G +P+ +IP + EL + QA+DR S+++ R VKLS Sbjct: 235 AKHLMFFSRLLEGNYPDTSRLIPNESKTELTLTTKEFLQAIDRASLLAREGRNNVVKLST 294 Query: 291 SSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++ + P++GK IE + E + I F+ KY+++ + + E+ Sbjct: 295 IEQGFVEISSNTPEIGKVIEEVQSQSIEGEELKISFSAKYMMDALKALEGTEI 347 >gi|153952672|ref|YP_001393437.1| DNA polymerase III subunit beta [Clostridium kluyveri DSM 555] gi|219853345|ref|YP_002470467.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016] gi|146345553|gb|EDK32089.1| DnaN [Clostridium kluyveri DSM 555] gi|219567069|dbj|BAH05053.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016] Length = 367 Score = 128 bits (322), Expect = 1e-27, Method: Compositional matrix adjust. Identities = 106/392 (27%), Positives = 193/392 (49%), Gaps = 35/392 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + E + + I K+++PV +LL+A + + + S ++ I I A Sbjct: 1 MKFLCTKNKLQESIFTVQKAITGKSSMPVLNGILLEAYNDTIRLTGSDIDLSIITTIQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENEL-----GTEVNISHGDSNFYLQSFP 114 V GSI + + + DI+RKL D IS + N + ++ NI H ++ + FP Sbjct: 61 VQEEGSIVIDSRIFGDIIRKLPNDNIYISTTENNSVEILCQKSKFNIIHMNA----EDFP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E P+ E + F + + LKN+++ T FA A +E R L GI F I + L L V Sbjct: 117 E--IPNINENIF---FSIPQNTLKNMIKSTIFATAQDEARPILTGILFEIKNKKLNL--V 169 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A DG+RLA+ + + + + ++P K + E+ +IL + +V ++ + + I N+ + Sbjct: 170 ALDGYRLALKSEFLDNE--NVINAVIPGKTLNEVSKILDDDNENVNITFTPNHILFNLIN 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 + RL+ GEF Y ++IP + + + L ++R S+M+ +KL + + Sbjct: 228 TKIISRLLQGEFIKYNSIIPEEYNLRVTAKKSELLDCIERASLMAKDSNTNLIKLKIEQN 287 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + +T N +G E +N+ + I FN KYL++++ + D+E+V S Sbjct: 288 NMIIT-SNSQIGMVREELNILLEGDTLQIAFNSKYLIDVLRIME-----DEEIVMEFSGS 341 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I K+SK N N Y+++P+R+ Sbjct: 342 VSPCII----KNSKKN-----NCIYLVLPVRL 364 >gi|170288484|ref|YP_001738722.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2] gi|170175987|gb|ACB09039.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2] Length = 366 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 184/345 (53%), Gaps = 14/345 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A+ Sbjct: 1 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ G V ++ +V+ L D ++S G + IS G + F + + P E Sbjct: 61 -EISGEARFVVPGDVIQKMVKVLPDEITELSL-----EGDALVISSGSTVFRITTMPADE 114 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+D Sbjct: 115 FPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236 G RLA+AE + + S ++ K++ E+ +L ++ + ++ V R+ L+ + Sbjct: 173 GFRLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVE 230 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + Sbjct: 231 TVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMR 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +PD G+ ++ + V + I FN K++ +++ +I ++E+ Sbjct: 291 LVSKSPDYGEVVDEIEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 335 >gi|56966599|pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit (Tm0262) From Thermotoga Maritima At 2.00 A Resolution Length = 378 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 184/345 (53%), Gaps = 14/345 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A+ Sbjct: 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ G V ++ +V+ L D ++S G + IS G + F + + P E Sbjct: 73 -EISGEARFVVPGDVIQKMVKVLPDEITELSL-----EGDALVISSGSTVFRITTMPADE 126 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+D Sbjct: 127 FPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASD 184 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236 G RLA+AE + + S ++ K++ E+ +L ++ + ++ V R+ L+ + Sbjct: 185 GFRLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVE 242 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + Sbjct: 243 TVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMR 302 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +PD G+ ++ + V + I FN K++ +++ +I ++E+ Sbjct: 303 LVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 347 >gi|229164441|ref|ZP_04292369.1| DNA polymerase III subunit beta [Bacillus cereus R309803] gi|228619046|gb|EEK75944.1| DNA polymerase III subunit beta [Bacillus cereus R309803] Length = 379 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 184/355 (51%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN T+ I+ G S F L Sbjct: 61 ENGKEIVEVAQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHFMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I IA S+++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEG-IADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293 Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 S L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 294 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|319651100|ref|ZP_08005234.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2] gi|317397270|gb|EFV77974.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2] Length = 378 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ ++R +++ + + + + TIP+ + + A++ + + S +I I IP Sbjct: 1 MRFIIQRDRLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + G+I + A +IV+KL D +IS EN L T I G S F L Sbjct: 61 EAGDEIVEIKQAGAIVLQAKFFSEIVKKLPTDTVEISV--ENHLQT--VIRSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + E F++ + +LK +V +T FA++T E R L G+ + + E+ L Sbjct: 117 GLDAEEYPHLPQIEEENVFKIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--ENGTL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I ++ ++++P K++ E+ +IL + + + ++E+++ Sbjct: 175 TCIATDSHRLALRKAQIETNASESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLS- 289 E L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 AEHLLFFSRLLEGNYPDTSRLIPSDSKTDVIVNTKEFLQAIDRASLLAKEGRNNVVKLST 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 + + ++ + P++GK +E + E + I F+ K++++ + + E+ Sbjct: 295 IDGGVIEISSNTPEIGKVVEEVQSKSIEGEELKISFSAKFMMDALKALEGSEI 347 >gi|206970404|ref|ZP_03231357.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] gi|218234602|ref|YP_002364857.1| DNA polymerase III subunit beta [Bacillus cereus B4264] gi|218895143|ref|YP_002443554.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228905434|ref|ZP_04069389.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222] gi|228911330|ref|ZP_04075134.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200] gi|228924235|ref|ZP_04087506.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955740|ref|ZP_04117735.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961754|ref|ZP_04123357.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228968643|ref|ZP_04129626.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar sotto str. T04001] gi|229051159|ref|ZP_04194703.1| DNA polymerase III subunit beta [Bacillus cereus AH676] gi|229077276|ref|ZP_04209963.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2] gi|229112903|ref|ZP_04242434.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15] gi|229148040|ref|ZP_04276379.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24] gi|229153649|ref|ZP_04281825.1| DNA polymerase III subunit beta [Bacillus cereus m1550] gi|229181736|ref|ZP_04309059.1| DNA polymerase III subunit beta [Bacillus cereus 172560W] gi|229193741|ref|ZP_04320682.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876] gi|296500840|ref|YP_003662540.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] gi|206734981|gb|EDZ52150.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] gi|218162559|gb|ACK62551.1| DNA polymerase III, beta subunit [Bacillus cereus B4264] gi|218540727|gb|ACK93121.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228589766|gb|EEK47644.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876] gi|228601769|gb|EEK59267.1| DNA polymerase III subunit beta [Bacillus cereus 172560W] gi|228629835|gb|EEK86488.1| DNA polymerase III subunit beta [Bacillus cereus m1550] gi|228635465|gb|EEK91956.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24] gi|228670582|gb|EEL25895.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15] gi|228706031|gb|EEL58332.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2] gi|228722222|gb|EEL73623.1| DNA polymerase III subunit beta [Bacillus cereus AH676] gi|228791072|gb|EEM38690.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar sotto str. T04001] gi|228797948|gb|EEM44958.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803968|gb|EEM50592.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835453|gb|EEM80823.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848348|gb|EEM93198.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200] gi|228854254|gb|EEM98957.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222] gi|296321892|gb|ADH04820.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] Length = 381 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 183/356 (51%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 350 >gi|42779083|ref|NP_976330.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987] gi|42734998|gb|AAS38938.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] Length = 379 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 184/355 (51%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TGIATDSHRLALRKAKIEG-IADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293 Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 S L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 294 STLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|16752700|ref|NP_444967.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae AR39] gi|7189343|gb|AAF38262.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae AR39] Length = 366 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS+ G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKELTEANLEISY----SAGEMAQITSGSSCFRLLSMEKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + ++ + I+P KAV EI++ + S + + L + +I + ++ + Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEATIFLDQDKIAVECDNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V + DS N + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 ------------DSASGLFVIMPMRL 363 >gi|15643032|ref|NP_228075.1| DNA polymerase III, beta subunit [Thermotoga maritima MSB8] gi|4980758|gb|AAD35350.1|AE001708_18 DNA polymerase III, beta subunit [Thermotoga maritima MSB8] Length = 366 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/345 (25%), Positives = 184/345 (53%), Gaps = 14/345 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A+ Sbjct: 1 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ G V ++ +V+ L D ++S G + IS G + F + + P E Sbjct: 61 -EISGEARFVVPGDVIQKMVKVLPDEITELSL-----EGDALVISSGSTVFRITTMPADE 114 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+D Sbjct: 115 FPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236 G RLA+AE + + S ++ K++ E+ +L ++ + ++ V R+ L+ + Sbjct: 173 GFRLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVE 230 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + Sbjct: 231 TVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMR 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +PD G+ ++ + V + I FN K++ +++ +I ++E+ Sbjct: 291 LVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 335 >gi|304437931|ref|ZP_07397877.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369071|gb|EFM22750.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 380 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 107/398 (26%), Positives = 191/398 (47%), Gaps = 34/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +SD++ L + + K P+ V + A +G LE++ + E+ IPA Sbjct: 1 MNITLPKSDLIAALQIVSKGLSTKPQTPILSGVYMNAREGQLELQTTNYELGFIVTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + L + RKL ++S E+ G I G F L++ ++FP Sbjct: 61 IHGTGTAVLPGKYLTEFARKL-PAEEVSINTESSDGL-AEIRSGTVRFTLRTMEVTDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF--HINEEDLKLCAVATDG 178 + + F + VL LV+++ FA EE R IF + E ++ AT+ Sbjct: 119 LQRMDGTLQFTIKDRVLARLVKKSAFACLKEEQRDR-RPIFTGCQLEVEGREVTFAATNV 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237 HRLAV + + ++ +I+P + + E+ R ++S S V VS S ++I ++ +++ M Sbjct: 178 HRLAVKSEQLEEEAGQI-RVIIPARFLEEVTRTMNSDVPSDVHVSCSYNQISVSFDNIYM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCT----NLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RLI+G FP+Y+ VIP D +R T AVDR S+++ + VKL + Sbjct: 237 TSRLIEGAFPDYRRVIP--QDANIRTKVTLDVAAFSAAVDRASLIARTDQYNIVKLRFAD 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +C++ ++P++G+A E++ + I FN YL++ + ++ S D + L Sbjct: 295 GMMCISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDS-----DTCILSLQG 349 Query: 353 SN------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 SN S + IR ++ N YV+ P+R Sbjct: 350 SNEQGVNLSPITIR---------EEADPNYIYVVTPVR 378 >gi|284039727|ref|YP_003389657.1| DNA polymerase III subunit beta [Spirosoma linguale DSM 74] gi|283819020|gb|ADB40858.1| DNA polymerase III, beta subunit [Spirosoma linguale DSM 74] Length = 379 Score = 128 bits (321), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 96/346 (27%), Positives = 167/346 (48%), Gaps = 15/346 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGL----LEIKASGPEIEIT 54 MK V S +L+ L H ++ +P+ + L + DGL L + AS + +T Sbjct: 1 MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 IP + GSI + A LL D +R L + GTE+ +G + L Sbjct: 61 TQIPVEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTEILTDNG--RYKLSGEN 118 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP S ++ S VL + + T FA +T+++R + G+ +N++ V Sbjct: 119 PIDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATF--V 176 Query: 175 ATDGHRL-AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 ATDGHRL D+ A + SII+PRKA+ ++L+ ++ V S++ Sbjct: 177 ATDGHRLIRYRRTDLNASAST--SIIIPRKAL-QLLKASLPENVPVTAEFSQANASFTFG 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RLID FP+Y+N IP +N + + T+L ++ R+ I ++ ++LSL ++ Sbjct: 234 PTQLICRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKAN 293 Query: 294 KLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 L ++ ++ D +A E + Y M+I FN K + E++ N+S+ Sbjct: 294 SLTISAEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSA 339 >gi|229072955|ref|ZP_04206151.1| DNA polymerase III subunit beta [Bacillus cereus F65185] gi|228710201|gb|EEL62179.1| DNA polymerase III subunit beta [Bacillus cereus F65185] Length = 381 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 183/356 (51%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSAEI 350 >gi|70725003|ref|YP_251917.1| DNA polymerase III subunit beta [Staphylococcus haemolyticus JCSC1435] gi|68445727|dbj|BAE03311.1| DNA polymerase III beta chain, sliding clamp subunit [Staphylococcus haemolyticus JCSC1435] Length = 377 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/351 (25%), Positives = 175/351 (49%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKL-EDDSENKNVIIPGKALSELNKIMSDSDEEIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 +D + ++ +P++G E + E + I FN +Y+++ + I +DEV Sbjct: 296 NDVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSRYMMDALKAIDNDEV 346 >gi|82749779|ref|YP_415520.1| DNA polymerase III subunit beta [Staphylococcus aureus RF122] gi|82655310|emb|CAI79690.1| DNA polymerase III beta chain [Staphylococcus aureus RF122] Length = 377 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A + + + S EI I IP + Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + DI++KL G + + T I+ G S F L Sbjct: 62 VNGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 D + ++ +P++G E ++ E + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346 >gi|323705849|ref|ZP_08117421.1| DNA polymerase III, beta subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534845|gb|EGB24624.1| DNA polymerase III, beta subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 370 Score = 127 bits (320), Expect = 2e-27, Method: Compositional matrix adjust. Identities = 89/344 (25%), Positives = 176/344 (51%), Gaps = 9/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ +L + + + + T+P+ +LL++ + + + + EI I +I A Sbjct: 1 MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLKSENNKIVMYTTDMEIGIQCSIEAF 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI VS+ + D+VRKL D FF+ +E V I G + F + EFP Sbjct: 61 IIEDGSIVVSSKVFSDLVRKLPDDT--VFFESDE-SNMVYIKCGLTEFSISGNSSDEFPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F L +LK +++ T F++A + R L GI +++ + + VA DG+R Sbjct: 118 IPDVIKDVTFSLNQKILKEMIKMTSFSVAQDMARPILTGILMEVSKNTINM--VALDGYR 175 Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +++ + D +++ S+++P E+LR++ D V +S + ++I + Sbjct: 176 MSIKKYVSEDPLSKNLDDFSVVIPGTTANELLRVMEDSDDEVSISFTGNQILFEFNDTKV 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L+DG + NY+ VIP + ++ +L A+DR S+++S + +K + + +L + Sbjct: 236 ISKLLDGNYMNYKTVIPKDFKSVVIIDKDDLIGAIDRASLLASNKSNLIKFTFNERELVI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + N + GK E +N+ ++I FN +YLLE + I S ++ Sbjct: 296 S-SNSEKGKMSERLNIEIEGNLIEIAFNSRYLLEALRVIDSKKI 338 >gi|116628685|ref|YP_813857.1| DNA polymerase sliding clamp subunit [Lactobacillus gasseri ATCC 33323] gi|311111575|ref|ZP_07712972.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22] gi|116094267|gb|ABJ59419.1| DNA polymerase III, beta subunit [Lactobacillus gasseri ATCC 33323] gi|311066729|gb|EFQ47069.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22] Length = 376 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF T+ I ++ F + + Sbjct: 61 DDLVVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVRESFQTK--IVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK++L Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E ++ E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRASITDSII 345 >gi|238853340|ref|ZP_04643720.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4] gi|238834028|gb|EEQ26285.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4] Length = 376 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF T+ I ++ F + + Sbjct: 61 DDLVVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVRESFQTK--IVSENTEFMINGLDTN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295 RL+DG++P+ +IP + + L ++++R S+++ R VK++L Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E ++ E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRASITDSII 345 >gi|317503310|ref|ZP_07961360.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae DSM 15606] gi|315665569|gb|EFV05186.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae DSM 15606] Length = 373 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 112/387 (28%), Positives = 186/387 (48%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ S + L ++I KN++P+ L + ++ L+I AS E +T +P S Sbjct: 1 MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDNENVMTSLVPLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS V + D V++L + L ++ +G NF Q+ E+P Sbjct: 61 ECDGEGSFAVPNRTILDAVKELPEQPLQFEVDIEALTIKILYQNGMYNFTAQN--ADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + + +AS+ L N + R+ FA AT+E+R +NGI+F + + L + VATDG Sbjct: 119 HTQAVPDGAHVITMASNSLINNITRSLFATATDELRPVMNGIYFDLTPDYLAI--VATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V D + S I+P+K + +LS DS V + + + + Sbjct: 177 HKL-VRNQDYTVKSDTPASFILPKKPATLLKNVLSKDDSDVVIKFDDRTTEIRFAEGQLC 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ + S KL ++ Sbjct: 236 CRLIEGNYPNYNSVIP-ENPHNMSIDRKSLIGALRRVLPFASESSQLVRFRIESGKLEVS 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356 ++ D A E + YN M I F L EI++N+ DEV F+L D S + Sbjct: 295 SEDIDFATSAKEQIVCDYNGPQMSIGFKGSSLQEILNNLDC-----DEVNFQLADPSRAG 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V + + ++ VN ++MPM Sbjct: 350 VIVPTEQPEN-------VNVLMLIMPM 369 >gi|227511153|ref|ZP_03941202.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227523340|ref|ZP_03953389.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227085635|gb|EEI20947.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227089531|gb|EEI24843.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 379 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 95/342 (27%), Positives = 169/342 (49%), Gaps = 20/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ R++ + L R I K TIP+ + LQA L + S +I I I Sbjct: 1 MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +V+ G+I + A DIV+KL + EN + I+ G S+F + Sbjct: 61 NPDNLLAVESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E S LA +LK ++ +T A++ +E R L G+ F ++ D A Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + I ++P K++ E+ R++ + +S++E+++ I Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLIELSRMIDDNKEDIILSVTENQVLFTIG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 RL++G +P+ +IP S+D + + L +++R S++S + R VK+++ Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295 Query: 293 DKLCMTV--DNPDMGKAIESM---NVYYNECPMDICFNYKYL 329 + +T+ ++PD+G E M +V NE ++I FN Y+ Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPKSVEGNE--LEISFNPDYM 335 >gi|332685536|ref|YP_004455310.1| DNA polymerase III subunit beta [Melissococcus plutonius ATCC 35311] gi|332369545|dbj|BAK20501.1| DNA polymerase III beta subunit [Melissococcus plutonius ATCC 35311] Length = 376 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/339 (27%), Positives = 175/339 (51%), Gaps = 17/339 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T++R+ +L+ L R I K TIP+ V + D L + S +I I + Sbjct: 1 MKLTIKRTSLLQELQTVQRAISSKTTIPILTGVKIVLADEGLYLTGSNADISIESFLTKE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A L +I+RKL +D + + N+ ++I G ++F + Sbjct: 61 DEKAKMTIFKTGSIVLQARFLGEILRKLPEDIVTMEVLENNQ----ISIVSGKADFIVNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P + E+ +L ++ T FA++ E R L G+ F ++E+ KL Sbjct: 117 QDAENYPHLPVIDTKNQMEIPVHLLTKIINETGFAVSMHESRPILTGVHFILSEQ--KLL 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRL+ + + Q+ + I++P K++ E+ R +++ V++S+ E+++ Sbjct: 175 AVATDSHRLS-QRIIPIEQMVENFDIVIPGKSLQELSRSFVNEEEQVEISIMENQVLFKT 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ +IP + + E+ L A++R S++S R V+LS+S Sbjct: 234 KNMYFYSRLLEGNYPDTNRLIPATFNTEVEFYGPKLLSAIERASLLSHEGRNNIVRLSIS 293 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYL 329 D + + ++P++GK ES+N + +DI FN Y+ Sbjct: 294 PDSVILYGNSPEIGKVEESLNYEHITGDTLDISFNPDYM 332 >gi|49476685|ref|YP_034362.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118475780|ref|YP_892931.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al Hakam] gi|196036084|ref|ZP_03103484.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|196041972|ref|ZP_03109259.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] gi|196045398|ref|ZP_03112629.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|218901208|ref|YP_002449042.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228918102|ref|ZP_04081630.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930496|ref|ZP_04093496.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931508|ref|ZP_04094418.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949212|ref|ZP_04111480.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094601|ref|ZP_04225668.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42] gi|229124993|ref|ZP_04254167.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201] gi|229187719|ref|ZP_04314855.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1] gi|254724148|ref|ZP_05185933.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055] gi|301051743|ref|YP_003789954.1| DNA polymerase III subunit beta [Bacillus anthracis CI] gi|49328241|gb|AAT58887.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415005|gb|ABK83424.1| DNA polymerase III, beta subunit [Bacillus thuringiensis str. Al Hakam] gi|195991251|gb|EDX55219.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|196023605|gb|EDX62281.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|196027227|gb|EDX65847.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] gi|218537161|gb|ACK89559.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228595787|gb|EEK53471.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1] gi|228658494|gb|EEL14160.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201] gi|228688848|gb|EEL42679.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42] gi|228810495|gb|EEM56848.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828151|gb|EEM73875.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829215|gb|EEM74852.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841582|gb|EEM86698.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300373912|gb|ADK02816.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis str. CI] Length = 379 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ + I + + + +++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|302872924|ref|YP_003841557.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B] gi|307687877|ref|ZP_07630323.1| DNA polymerase III subunit beta [Clostridium cellulovorans 743B] gi|302575781|gb|ADL49793.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B] Length = 367 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 111/393 (28%), Positives = 199/393 (50%), Gaps = 37/393 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T +++++ E + A + + K+T+P+ +LL A L I +S ++ I A+ Sbjct: 1 MNFTCDKTNLQEAISIAQKAVTGKSTMPILQGLLLNARGNKLTINSSDIDLGIETKCNAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSI V + L DI+RKL + QI E GT + I+ S F L EFP Sbjct: 61 IKEEGSIVVDSKLFGDIIRKLPNSEIQIKSISE---GT-IEITCQRSRFTLVHMKADEFP 116 Query: 120 STK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +E+ + S + ++KN++ T FA+A +E R L GI F I L L VA D Sbjct: 117 QLPYIDEDEIIS--IPQKLIKNMIRSTIFAIAIDETRPILTGILFEIKNRTLNL--VALD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G RLA+ + I + + S ++P K + E+++IL + V ++ + + I N+ + Sbjct: 173 GFRLALKKETIDTE--QEFSAVIPGKTLHEVVKILED-EGDVDITFTTNHILFNLGETKV 229 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLC 296 RL++GEF YQ +IP ++ + VN +L +++R S++S +K ++S D + Sbjct: 230 VSRLLEGEFIKYQAIIPEEHELSISVNRASLLNSIERASLVSKDASSNLIKFNISEDNIV 289 Query: 297 MTVDNPDMGKAIESMNVYY---NECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDS 352 +T N +G E +++ NE + I FN KYL++ + +++++E + + S Sbjct: 290 IT-SNSQLGDVREEVSIKLLKGNE--LQIAFNSKYLIDAL------KIMEEETITLQFTS 340 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S I+ + D N Y+++P+RI Sbjct: 341 AVSPCIIKNIEND---------NVIYLVLPVRI 364 >gi|30018280|ref|NP_829911.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579] gi|228942639|ref|ZP_04105171.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975569|ref|ZP_04136121.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982205|ref|ZP_04142494.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407] gi|229130736|ref|ZP_04259689.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4] gi|29893820|gb|AAP07112.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579] gi|228652753|gb|EEL08638.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4] gi|228777557|gb|EEM25835.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407] gi|228784179|gb|EEM32206.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817065|gb|EEM63158.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937799|gb|AEA13695.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar chinensis CT-43] Length = 381 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 183/356 (51%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 350 >gi|310657318|ref|YP_003935039.1| DNA polymerase III subunit beta [Clostridium sticklandii DSM 519] gi|308824096|emb|CBH20134.1| DNA polymerase III subunit beta [Clostridium sticklandii] Length = 363 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITV ++++ + + + KNTI + +L + +G L + ++ EI + I A Sbjct: 1 MKITVNQNELQSAINMTLKGVSNKNTIEILKGILFETYEGKLMLTSNNLEIGVQTVIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + + A ++ DIVRKL E + V IS F ++ F +FP Sbjct: 61 IQREGKVVIDAKIISDIVRKLPSSDVCLDVDETHI---VKISSTSLEFNIKGFSGEDFPI 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E Y E++S + K +V +T FA++ +E + L G + + VA DG R Sbjct: 118 PVSIEENYYKEISSDIFKEMVRKTSFAVSLDETKPLLMGELIEFKNNSINM--VAIDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + IIVP K + +I R++ +K+ E I ++ R Sbjct: 176 LAIKYIK-DDNFVTDSKIIVPGKTLVDISRMIPPSVDKIKLGFDEKHASFIIGETILTTR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GEF NY +IP +L+++ + A+DR +++ + +K+ +S D L ++ Sbjct: 235 LLEGEFINYSQIIPKEFSTKLKIHTKDFLYALDRACLVA--KNNLIKIDISDDNLKISSK 292 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSVFI 359 N ++G E++ + ++I FN KY ++ + + +D+E + L+++ S + Sbjct: 293 NDEIGNLEENIFIELEGSNLEIAFNAKYFMDAL------KTIDEEYISLELNTNVSPCIL 346 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D DS Y+L+P+RI Sbjct: 347 KPYDDDSYT---------YLLLPVRI 363 >gi|52145207|ref|YP_081621.1| DNA polymerase III subunit beta [Bacillus cereus E33L] gi|228988719|ref|ZP_04148804.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159051|ref|ZP_04287107.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342] gi|51978676|gb|AAU20226.1| DNA polymerase III, beta subunit [Bacillus cereus E33L] gi|228624470|gb|EEK81241.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342] gi|228771031|gb|EEM19512.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 379 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 183/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ + I + + +++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|256419662|ref|YP_003120315.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588] gi|256034570|gb|ACU58114.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588] Length = 372 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 6/343 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I +P+ L + L + A+ E + + Sbjct: 1 MKFIVSSSTLLKQLQQISGVINSNTVLPILEDFLFLIDKNELTVVATDLETVMKVKLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G I + A +L D ++ L D N E+ +G ++ PE+ FP Sbjct: 61 AKESGRICIPAKILMDSLKNLPDQPLTFHIDLNSYAVEITSDNGKYKVMGEN-PEN-FPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF ++++ L + +T FA++ +++R + G+FF + L VATD HR Sbjct: 119 EPAADDTTSFTVSATALVTAINKTLFAVSNDDLRPAMTGVFFELTPTSLTF--VATDAHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V V + K + IVP+K + + L DS +K++ S++ + + M R Sbjct: 177 L-VKYVRTGVECPKAETFIVPKKPLNLLKSALPDNDSEIKIAYSQNHFFVMHDGAQMICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID FP+Y+ VIP N L V ++ + A+ RVS+ ++ V LS++ +L ++ Sbjct: 236 LIDARFPDYKVVIPKDNPYRLTVAKSDFQNALKRVSVFANKSTNQVALSITGSELQLSAQ 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + E M+ Y M I FN K+L+E+++ DE+ Sbjct: 296 DVDFSFEGNERMSCQYTGDDMQIAFNAKFLIEMLNAAEGDEIT 338 >gi|217967933|ref|YP_002353439.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724] gi|217337032|gb|ACK42825.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724] Length = 367 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 107/397 (26%), Positives = 186/397 (46%), Gaps = 42/397 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ D+ + L + K TIP+ +V ++A + L ++ + EI + ++P Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSFP 114 V+ G + + A L D++ KL E L VN I G S+ +Q Sbjct: 61 VEEPGEVCLPASLFIDVIGKL---------PEVTLEIHVNERNRAVIHAGYSDIEIQGES 111 Query: 115 ESEFPSTKEE---EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 EFP + EY SF+ + +++T FA A +EI+ L G+ F E KL Sbjct: 112 TEEFPKVEIGNIGEYHASFD--RILFAKAIKQTIFAAAEDEIKQVLTGVLFEGKEG--KL 167 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHL 230 VA DGHRLA+ ++I A IIVP K++ E +I++ + D V ++ ++++ Sbjct: 168 NMVAVDGHRLALKTLEIEKDFA---PIIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVF 224 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 N + RL+ G+FP Y +IP + N + + R+ + + + + VK+S Sbjct: 225 NCGEIYFISRLLQGQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKIS 284 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 LSS+++ ++ + G A E + + ++I FN +YL++ +DN DEVV Sbjct: 285 LSSEEVVISTLPSERGFAKEVLPAEVEIDGNLEIGFNVEYLMDPLDNADW-----DEVVM 339 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R S I + + N Y+LMP+R+ Sbjct: 340 RFTSDLGPALITSPEDE---------NYTYILMPVRL 367 >gi|253573853|ref|ZP_04851195.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846330|gb|EES74336.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 127 bits (319), Expect = 3e-27, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 185/358 (51%), Gaps = 27/358 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI + + D+ E + H + I + TIP+ + L N + + AS +I I IPA Sbjct: 1 MKIRILKHDLNESIQHVSKAISSRTTIPILTGIKLDVNFQGMTLTASDTDISIQAFIPAE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL ++I E + G + I G ++ + Sbjct: 61 DQEKQIVQVERPGSVVLPAKFFVEIIKKLP-SSEIEM--EVQDGFQTFIRSGSTDIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + +LKN++ +T F+++T E L G+ +++ + K Sbjct: 118 LDPEEFPVLPSIEENQVISIPGDLLKNMIRQTVFSISTNETSPILTGVLWNLADNQFKF- 176 Query: 173 AVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRLA +A +D A+ + +I++ K + E+ +I+ +++ V++ ++++++ Sbjct: 177 -VATDRHRLASRIAGLD-DAEGVRFSNIVIAGKTLNELSKIIPDQNTRVEIVVADNQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS------VRIQ 284 I+ + R++DG +P+ +IP + EL ++ L ++DR ++S VR+Q Sbjct: 235 KIDRVLFYTRILDGTYPDTSKIIPTTYKTELILDTKKLSDSIDRAYLLSREEKTNIVRLQ 294 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + ++ + ++GK E ++V +++ P+ I FN KY+L+++ + S+++ Sbjct: 295 ----TMEDGTIEISSSSSELGKVTEQLDVAHFSGDPLRISFNSKYMLDVLKVVESEQL 348 >gi|288803394|ref|ZP_06408827.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18] gi|288334214|gb|EFC72656.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18] Length = 374 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 184/370 (49%), Gaps = 23/370 (6%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75 R+I KN++P+ L + +DG L I AS E + G + +++ C G+ V+ H + Sbjct: 19 RVINSKNSLPILDCFLFEVHDGQLTITASDSENVMRGTL--NLESCEGEGNFAVNNHTIL 76 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134 D V++L + +E+ V +G NF + E+P + + + L + Sbjct: 77 DAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPI--LGADEYPKAQSVSDNATTITLQA 134 Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 L + + R+ FA A +E+R +NG++F + E+ L + VA+DGH+L ++ + + Sbjct: 135 EKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDGLAI--VASDGHKLVRNKIFSIKSDSP 192 Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 S ++P+K + +LS V + E ++ +++ RLI+G++PNY +VIP Sbjct: 193 A-SFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLACRLIEGKYPNYNSVIP 251 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313 N ++ ++ +L A+ RV +S Q ++ +S+ L + ++ D A ES+ Sbjct: 252 QDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSAGLLELNAEDIDFATSAKESVTC 311 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 Y PM I F +L+I++N+ SD+V V+ D S + V + G +++ Sbjct: 312 EYGGNPMSIGFKGSSMLDILNNLESDDV----VIQLADPSRAGVIVPGTQPENE------ 361 Query: 374 VNAFYVLMPM 383 + ++MPM Sbjct: 362 -DILMLIMPM 370 >gi|229035148|ref|ZP_04189094.1| DNA polymerase III subunit beta [Bacillus cereus AH1271] gi|228728214|gb|EEL79244.1| DNA polymerase III subunit beta [Bacillus cereus AH1271] Length = 379 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 183/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN T+ I+ G S F L Sbjct: 61 DDGKEIVEVAQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ + I + + +++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 TLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|15618258|ref|NP_224543.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae CWL029] gi|4376617|gb|AAD18487.1| DNA Polymerase III (beta chain) [Chlamydophila pneumoniae CWL029] Length = 366 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS + G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKELTEANLEIS----SSAGEMAQITSGSSCFRLLSMEKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + ++ + I+P KAV EI++ + S + + L + +I + ++ + Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEAAIFLDQDKIAVECDNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V + DS N + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 ------------DSASGLFVIMPMRL 363 >gi|15835873|ref|NP_300397.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae J138] gi|33241682|ref|NP_876623.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae TW-183] gi|14194707|sp|Q9Z8K0|DPO3B_CHLPN RecName: Full=DNA polymerase III subunit beta gi|8978712|dbj|BAA98548.1| DNA polymerase III (beta chain) [Chlamydophila pneumoniae J138] gi|33236191|gb|AAP98280.1| DNA-directed DNA polymerase III beta chain [Chlamydophila pneumoniae TW-183] Length = 366 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS + G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKELTEANLEIS----SSAGEMAQITSGSSCFRLLSMEKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + ++ + I+P KAV EI++ + S + + L + +I + ++ + Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEATIFLDQDKIAVECDNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V + DS N + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 ------------DSASGLFVIMPMRL 363 >gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames] gi|47525256|ref|YP_016605.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49183041|ref|YP_026293.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] gi|65317470|ref|ZP_00390429.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bacillus anthracis str. A2012] gi|167635102|ref|ZP_02393419.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|167641746|ref|ZP_02399989.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|170689459|ref|ZP_02880649.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|170707580|ref|ZP_02898033.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|177655289|ref|ZP_02936843.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190569279|ref|ZP_03022173.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227812680|ref|YP_002812689.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229601421|ref|YP_002864659.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] gi|254687069|ref|ZP_05150927.1| DNA polymerase III subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254735165|ref|ZP_05192875.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254742126|ref|ZP_05199813.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B] gi|254761356|ref|ZP_05213378.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia 94] gi|30253518|gb|AAP24060.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames] gi|47500404|gb|AAT29080.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176968|gb|AAT52344.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne] gi|167510300|gb|EDR85703.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|167529576|gb|EDR92326.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|170127576|gb|EDS96450.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|170666561|gb|EDT17334.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|172080216|gb|EDT65308.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190559586|gb|EDV13577.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227005199|gb|ACP14942.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229265829|gb|ACQ47466.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] Length = 379 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ + I + + + +++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|87301552|ref|ZP_01084392.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701] gi|87283769|gb|EAQ75723.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701] Length = 380 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 97/352 (27%), Positives = 182/352 (51%), Gaps = 15/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++P Sbjct: 1 MKLVCSQAELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ + L +IV +L + IS E E +V I+ ++ ++ +F Sbjct: 61 ASVESSGTITLPSRLFGEIVARLSSDSPISLSCE-EGQEQVEITSRSGSYQMRGLSAEDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + L L + T FA + +E + L G+ + ++DL+ CA ATDG Sbjct: 120 PDLPLVQTGTPLRLQPDALVKGLRATLFASSGDEAKQLLTGVHLGLADQDLE-CA-ATDG 177 Query: 179 HRLAVAEVDIV---AQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLN 231 HRL+V ++ A+ P ++ VP +++ E+ R+LS+ S VSL R + L Sbjct: 178 HRLSVLRLEKAFSGAEDGSEPFAVTVPARSLRELERLLSACSSDDPVSLYCDRGQVVFLW 237 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS-- 289 + + ++ R +DG +PNY+ +IP + L ++ QA++RV++++ VKLS Sbjct: 238 ADQV-LTSRSLDGTYPNYRQLIPDRFSRTLELDRRGFVQALERVAVLADQHNNVVKLSSD 296 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +S +L ++ D D+G E + + P++I FN +Y+L+ + ++ + V Sbjct: 297 PASGQLHISADAQDVGSGSEDLPAVISGDPIEIAFNVRYMLDGLKAMTPERV 348 >gi|332186935|ref|ZP_08388676.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] gi|332012945|gb|EGI55009.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] Length = 374 Score = 127 bits (318), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 18/260 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ VER ++ + ++E + TIPV ++L++ G L + + +++++ +PA Sbjct: 1 MKVEVERDALMGAVRAVIDVVEARTTIPVLSNMLVEVEGGSLTLTGTDLDLQVSATVPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN------ELGTEVNISHGDSNFYLQSFP 114 ++ TV A RKLQ A S FK + V + G L + Sbjct: 61 GEM--KTTVDA-------RKLQ-AAVDSLFKGKVTIAPIDGRAAVTLKAGRGQRILPTLS 110 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++FP E SF + S+ L +++ AM++EE RYYL GI+ H E L+ Sbjct: 111 ANDFPKRGPIEDARSFTMPSADLSRILDTASVAMSSEETRYYLCGIYIHPYEGRLR--GA 168 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRL EVD+ A + +I+PRKAVG + ++L+ D V+V ++ + + I Sbjct: 169 ATDGHRLVRVEVDLPAGAEMIKGVILPRKAVGHLRKLLAKHDGPVEVEVTTAAMAFQIGG 228 Query: 235 LSMSVRLIDGEFPNYQNVIP 254 + + +LID FP+Y VIP Sbjct: 229 VRVLTKLIDDTFPDYNRVIP 248 >gi|325106471|ref|YP_004276125.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145] gi|324975319|gb|ADY54303.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145] Length = 374 Score = 126 bits (317), Expect = 4e-27, Method: Compositional matrix adjust. Identities = 95/350 (27%), Positives = 172/350 (49%), Gaps = 20/350 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + +L+ L + +P+ + L + +G L I A+ + + ++ Sbjct: 1 MRFIVSTTTLLKHLQSVSGALSSSAVLPILENFLFEIKEGNLIISATDLQTSMITSLAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G I V + +L D ++ L + Q F +E + IS GD + L +FP Sbjct: 61 AKEGGKIAVPSKILLDTLKTLPE--QPIAFSVDEQTYAIEISAGDGKYKLSGENGEDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L +S L + +T FA++ +E+R + G+F ++ +D+ VATD H+ Sbjct: 119 IPTVDEASTVNLPASALSEAINKTIFAVSNDELRPAMTGVFCQLSPQDITF--VATDAHK 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D ++ + S I+P+KA+ + L S+D +V V + + ++S+ Sbjct: 177 LVRYRRKDTKSESST--SFILPKKALNLLKSALPSEDVNVAVEYNSTSAFFKFANISLIC 234 Query: 240 RLIDGEFPNYQNVIPCSN------DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 RLID +P+Y+ VIP +N DK L +NC + RV I ++ V+L +S Sbjct: 235 RLIDERYPDYEAVIPQNNPNKLILDKSLFLNC------LKRVVIFANKTTHQVRLKISGS 288 Query: 294 KLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +L ++ ++ D +A E + YN M+I FN K+L+E+++NIS DEV Sbjct: 289 ELHISSEDLDFANEAHERIGCQYNGEDMEIGFNAKFLIEMLNNISGDEVT 338 >gi|165873018|ref|ZP_02217639.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] gi|254755964|ref|ZP_05207996.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum] gi|164711230|gb|EDR16786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] Length = 379 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQGVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATD HRLA+ + I + + + +++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|227889155|ref|ZP_04006960.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227850384|gb|EEJ60470.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 376 Score = 126 bits (317), Expect = 5e-27, Method: Compositional matrix adjust. Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEKLTLTGSDTDISIEIQIPVN 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF E + + I ++ F + + Sbjct: 61 DDLIVQSKGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 + + D+P++G E + E + I FN YL E + +D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRASITDSII 345 >gi|308066840|ref|YP_003868445.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681] gi|305856119|gb|ADM67907.1| DNA polymerase III, beta chain [Paenibacillus polymyxa E681] Length = 380 Score = 126 bits (317), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 195/396 (49%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKI++ ++ + E + H + I + TIP+ + L N + + AS +I I IP Sbjct: 1 MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + A +I++KL +I +++ T IS G + + Sbjct: 61 DGDQTVVQIEQPGSVVLPAKFFVEIIKKL-PSQEIHMEVKDQFQT--FISSGATEIQIVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + +LKN++++T F+++T E L G+ +++ E +LK Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + ++ + ++++ K + E+ RI+ ++ V + ++++++ Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 ++ + R++DG +P+ +IP S EL V+ +L +++DR ++S + VK+ S Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ + ++GK E + V E P+ I FN KY+L+++ I S +++ Sbjct: 296 LENGGLEISSSSSELGKVREEVTVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D NA Y+++P R Sbjct: 351 AFTGIMSPIILKPADSS---------NALYIILPYR 377 >gi|229176166|ref|ZP_04303658.1| DNA polymerase III subunit beta [Bacillus cereus MM3] gi|228607325|gb|EEK64655.1| DNA polymerase III subunit beta [Bacillus cereus MM3] Length = 379 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 94/355 (26%), Positives = 183/355 (51%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DNGKEIVEVAQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IISGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I IA S+++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEG-IADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293 Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 S L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 294 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348 >gi|228474178|ref|ZP_04058915.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119] gi|314935202|ref|ZP_07842555.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|228271873|gb|EEK13210.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119] gi|313656537|gb|EFS20276.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 376 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 177/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 1 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNNVILTGSDSEISIEITIPKQ 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G + + T I+ G S F L Sbjct: 61 VDGEDIVDITETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I +D +L Sbjct: 118 LDPEQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 176 CTATDSHRLAVRKLKLEDE-SENKNVIIPGKALSELNKIMSDNDEDIDIFFASNQVLFKV 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 235 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 294 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 ++ + ++ +P++G E + E + I FN KY+++ + I ++EV Sbjct: 295 NEVIELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAIDNEEV 345 >gi|33862274|ref|NP_893834.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9313] gi|33640387|emb|CAE20176.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9313] Length = 388 Score = 126 bits (316), Expect = 6e-27, Method: Compositional matrix adjust. Identities = 98/402 (24%), Positives = 198/402 (49%), Gaps = 33/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I A+ Sbjct: 1 MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ +E G +V + ++ ++ +F Sbjct: 61 ASVESSGAITLPARLLGEIVARLSSDSPITL-ATDEAGEQVELKSSSGSYQMRGMSADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + ++ + L + T FA +++E + L G+ H + + ++ A ATDG Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKAME--AAATDG 177 Query: 179 HRLAV--------AEVDIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SE 225 HRLAV E + +++ + S+ +P +++ E+ R+++ +VSL + Sbjct: 178 HRLAVLSLADALAVETTVSSEMDDEGENFSVTLPSRSLREVERLIAGWRGDDQVSLFCDK 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ R +DG +PNY+ +IP + V+ A++R+++++ Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFIAALERIAVLADQHNNV 297 Query: 286 VKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 VK+S +S+ L ++ D D+G ES++ + + I FN +Y+L+ + + S Sbjct: 298 VKVSGDNTSELLQISADAQDVGSGSESLSAEFTGDAVQIAFNVRYVLDGLKVMDS----- 352 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V R ++ + I KD D + Y++MP++I Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386 >gi|282889708|ref|ZP_06298247.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500282|gb|EFB42562.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 376 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 101/385 (26%), Positives = 186/385 (48%), Gaps = 13/385 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L+ I+ +K TIP+ + L++A +G L + A+ + I A Sbjct: 1 MKFVISTQELNFLINKCLNIVSQKATIPILSNFLMEAKNGELILTATDLTVGIRCHTEAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + A ++R+L + + T+V S S F L +SEFPS Sbjct: 61 ILEEGATALPAKRFAQLIRELT-AVNVEIATNDNETTQV--SADSSRFKLHGMNKSEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F++ LK+++ RT FA++ ++ R+ L G+F I E K TDG R Sbjct: 118 LPQMDGAVQFKIPEGDLKDMLFRTAFAVSRDDNRFALTGVFMQIMEG--KAIFAGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + + +A + I+P KAV EIL+ LS + V L +I + + + + Sbjct: 176 LSRTHLSLGLDVAFNGNYIIPIKAVEEILKNLSD-NGEATVYLMHDKIAIEASNTMLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ G++P+ VIP + L ++ L + +VS+ ++ +V+ + + +L + + Sbjct: 235 LLSGDYPDVSRVIPNQLETVLSLHREELITLLRQVSLFTADTSHSVRFTFNEGELRLAAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G+ SM V Y ++I FN Y L+I+ + S E V + D N V Sbjct: 295 TMEIGEGKVSMPVNYTGPRLEIAFNPIYFLDILRH-SKGETVTMGLT---DPFNPGVI-- 348 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 DK+ + ++ V+ +VLMPMR+ Sbjct: 349 -TDKEGVSQINSSVSPLFVLMPMRL 372 >gi|300727972|ref|ZP_07061350.1| DNA polymerase III, beta subunit [Prevotella bryantii B14] gi|299774814|gb|EFI71428.1| DNA polymerase III, beta subunit [Prevotella bryantii B14] Length = 374 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 99/346 (28%), Positives = 166/346 (47%), Gaps = 10/346 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 MK TV + + L ++I KN++ + L D L I AS E ++ T AI Sbjct: 1 MKFTVSSTALSSRLNTLSKVINSKNSLAILDSFLFHITDNQLTITASDRENVMQTTIAI- 59 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V+ G + H++ D VR+L + ++ +G NF Q+ EF Sbjct: 60 ENVEGTGDFCIPNHVILDAVRELPEQPLNFDIDLESFAIKILYQNGLYNFTAQN--AEEF 117 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + E+ +S+L + + R+ FA A +E+R +NGI+F + + L + VA+D Sbjct: 118 PPVQHIEDGATEITAEASILVDNINRSLFATANDELRPVMNGIYFDLTPDSLSI--VASD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GH+L V + + S ++P+K + +LS D V + ++ + ++ Sbjct: 176 GHKL-VRNQNFTIKNDIPASFVLPKKPATLLKNVLSKDDGDVTIKFNDRNAEIIFTDGTL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ L KL + Sbjct: 235 NCRLIEGRYPNYNSVIPKDNPNHVTIDRKSLLSAIRRVLPFASESSQLVRFHLEMGKLEV 294 Query: 298 TVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + D A E + Y PM I F LLEI++NI S+EVV Sbjct: 295 SSQDLDFATAAKEHLTCEYTNKPMSIGFKGSSLLEILNNIDSEEVV 340 >gi|304382374|ref|ZP_07364876.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii DSM 16973] gi|304336491|gb|EFM02725.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii DSM 16973] Length = 361 Score = 126 bits (316), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 27/372 (7%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75 R+I KN++P+ L + ++G L I AS E + I +D C G+ V ++ Sbjct: 6 RVINSKNSLPILDCFLFEVSNGQLSITASDSENVMKTTI--QLDECDGNGNFAVPNRIIL 63 Query: 76 DIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELA 133 D VR+L + I F EN + I + + ++ + E+P T E + Sbjct: 64 DAVRELAEQPLSIEFTPEN---YTIKIVYQNGVYHFNAQSAEEYPKTTPITEGATVITID 120 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 SSVL + + R FA A +E+R +NGI+F + E L + VA+DGH+L ++ + Sbjct: 121 SSVLGDNLSRCLFATAQDELRPVMNGIYFDLTPESLAI--VASDGHKLVRNKLLNIHN-- 176 Query: 194 KMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 +MP + I+P+K G + ILS V + ++ +S RLI+G +PNY +V Sbjct: 177 EMPATFILPKKPAGILKNILSKDGGDVIIKFDGRNAEISFADGFLSCRLIEGRYPNYNSV 236 Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESM 311 IP +N + ++ +L A+ RV +S Q ++ + KL ++ ++ D A ES+ Sbjct: 237 IPQNNPNRVTIDRKSLLGALRRVLPFASDSSQLIRFHIEGGKLELSSEDIDFATSAKESV 296 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 Y PM I F L EI+ N+ S+EV +V D S + + + G ++ Sbjct: 297 TCEYIGTPMSIGFKGSSLSEILSNLESEEV----IVELADPSRAGIIVPG-------TQE 345 Query: 372 NKVNAFYVLMPM 383 + ++MPM Sbjct: 346 ENTDVLMLIMPM 357 >gi|229015407|ref|ZP_04172413.1| DNA polymerase III subunit beta [Bacillus cereus AH1273] gi|229026931|ref|ZP_04183254.1| DNA polymerase III subunit beta [Bacillus cereus AH1272] gi|228734389|gb|EEL85060.1| DNA polymerase III subunit beta [Bacillus cereus AH1272] gi|228745886|gb|EEL95882.1| DNA polymerase III subunit beta [Bacillus cereus AH1273] Length = 381 Score = 125 bits (315), Expect = 7e-27, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 185/358 (51%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEVVEIEQSGSIVLQAKYFSEIVKKLPKEIVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ ++P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLEISSNSPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|327475229|gb|AEA77209.1| DNA polymerase III beta subunit [Exiguobacterium sp. EPVM] Length = 379 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/364 (25%), Positives = 182/364 (50%), Gaps = 39/364 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M +T++R ++ + + + + TIP+ + L+A+ L + S EI I IP Sbjct: 1 MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106 + GS+ ++A L +IV+KL NE+ EV+ I G + Sbjct: 61 EGGIELIQIQRAGSVVLNARFLGEIVKKL---------PTNEVTLEVSPNFMTRIESGQA 111 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 F+L E+P E F L + +LK ++ +T FA++ +E R L G+ F + Sbjct: 112 EFHLNGLDPDEYPRLPELSSERRFYLPADLLKTIIRQTSFAVSAQETRPVLTGVNF--SA 169 Query: 167 EDLKLCAVATDGHRLAVAEV------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 E L VATD HRLA+ D+ Q +++VP +++ E+ ++L ++ V+ Sbjct: 170 EKGFLTCVATDSHRLALRRARFETDNDLTFQ-----NVVVPGRSLNELAKLLDREELPVE 224 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + L++ +I ++++S RL+DG +P+ +IP +R+N + QA+DR S+++ Sbjct: 225 IVLTDQQILFRMKNISFFSRLLDGAYPDTSRLIPEEYRTAVRLNAKDFLQAIDRASLLAR 284 Query: 281 V-RIQAVK-LSLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNIS 337 R +K ++ + + ++ +P++GK E +++ E + I FN K++++ + + Sbjct: 285 ADRNNVIKFVAEEATTVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALD 344 Query: 338 SDEV 341 + E+ Sbjct: 345 ASEI 348 >gi|297564486|ref|YP_003683458.1| DNA polymerase III subunit beta [Meiothermus silvanus DSM 9946] gi|296848935|gb|ADH61950.1| DNA polymerase III, beta subunit [Meiothermus silvanus DSM 9946] Length = 366 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 167/344 (48%), Gaps = 20/344 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + + E LG R+I +++ P+ ++ ++ + L IK + EI++ +PA Sbjct: 1 MEVRIPKRTLAEGLGILERVIPSRSSNPILTYLPIELGNKGLVIKGTNGEIDLEVHLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-------SF 113 G + V A + IVR L G + +N + +NF Q + Sbjct: 61 TQGEGHVLVPAQPFFQIVRSL-PGELVEMVIKNVSSAGGGMELSSANFRTQLSTASPEGY 119 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 PE F S EE L ++ L + + +A +TEE R G+ ++ + L+ A Sbjct: 120 PELSFLSQSEER------LPAAKLAQAITQVRYAASTEEYRAIFRGVQLELSPKGLR--A 171 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VA+DG RL+ D+ + ++P K+ EI+R+ + V + + E + L E Sbjct: 172 VASDGFRLS--RYDLPMHLVSSRKFVIPAKSADEIVRVFKDTEGEVSLGVGEGSLTLIGE 229 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ MSV+L++GEFP+Y VIP S E ++ LR+++ RV+++S V L + D Sbjct: 230 AVRMSVKLMEGEFPDYGRVIPQSFILEATLSAERLRESLKRVAVLSDRNNHRVDLLFAQD 289 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNI 336 +L M V D G+ E + + E + + FN +YL++ + I Sbjct: 290 RLEM-VSEGDYGQGREEIALEAVGEPQLMVAFNAQYLIDALSPI 332 >gi|227508129|ref|ZP_03938178.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192358|gb|EEI72425.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 379 Score = 125 bits (315), Expect = 8e-27, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 173/354 (48%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ R++ + L R I K TIP+ + LQA L + S +I I I Sbjct: 1 MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ G+I + A DIV+KL + EN + I+ G S+F + Sbjct: 61 NPDNLLAIESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E S LA +LK ++ +T A++ +E R L G+ F ++ D A Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + I ++P K++ E+ R++ + +S++E++ I Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLVELSRMIDDNKEDIILSVTENQALFTIG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 RL++G +P+ +IP S+D + + L +++R S++S + R VK+++ Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295 Query: 293 DKLCMTV--DNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +T+ ++PD+G E M +V NE ++I FN Y+ + + + S + Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPRSVEGNE--LEISFNPDYMKDALRSFSQSTI 347 >gi|269303215|gb|ACZ33315.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 366 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I++ + + +V++L + +IS + G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKELTEANLEIS----SSAGEMAQITSGSSCFRLLSMEKEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + ++ + I+P KAV EI++ + S + + L + +I + ++ + Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEATIFLDQDKIAVECDNTLLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+ SM V Y+ ++I FN + L+I+ + S DE+V + DS N + Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVCLGIS---DSYNPGIIT 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 ------------DSASGLFVIMPMRL 363 >gi|210634751|ref|ZP_03298279.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279] gi|210158691|gb|EEA89662.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279] Length = 367 Score = 125 bits (315), Expect = 9e-27, Method: Compositional matrix adjust. Identities = 103/389 (26%), Positives = 187/389 (48%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + + + + I +T+P+ VL++A DG+LE + S I I I A Sbjct: 1 MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119 VD G + + +L +IV+ L D A + F EL +V I+ S F L + +FP Sbjct: 61 VDEEGQVVIPCKMLSNIVKTLPD-APVEF----ELSERQVTITCERSAFRLNTLDAGDFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S EL +++L +V R +T++ R LNG++ + ++L VATD + Sbjct: 116 EFPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSY 173 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV + + + + + VP A + L I + S+ + +++++ + + Sbjct: 174 RLAVCDTQVETSTLEGSFELNVPADAFNDALAITGGQ-GSILIGSTDTQVVFVAGNTTYV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R I+G +PNY+ ++P + ++++ L A+ RVS ++ AVK +S++ M Sbjct: 233 ARRIEGVYPNYKALLPAACATTVKIDVAALTSALKRVSTVAQAN-SAVKFDISTETGSMV 291 Query: 299 VD--NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + D A ++ V I FNY Y+ ++ +S ++ E+ L S N + Sbjct: 292 LSAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQA 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K+N Y++MP+RI Sbjct: 348 GVFKSYD---------KINYLYLVMPVRI 367 >gi|125974857|ref|YP_001038767.1| DNA polymerase III subunit beta [Clostridium thermocellum ATCC 27405] gi|125715082|gb|ABN53574.1| DNA polymerase III, beta subunit [Clostridium thermocellum ATCC 27405] Length = 366 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 106/389 (27%), Positives = 196/389 (50%), Gaps = 29/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MKI + ++E + + + K T+ + +LL+A D K +G ++E I I Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDNF---KMTGNDLELGIECLID 57 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + GSI +++ + DIVR+L D + KEN V I +S+F L+ P F Sbjct: 58 ADILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSF 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E +++ +++++ +T FA++TE R L G ++ V+ DG Sbjct: 115 PSLPSIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITF--VSIDG 172 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+A+ + + + S++VP K + EI +IL D + + S+++I I + + Sbjct: 173 FRMALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVV 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 RL++GE+ NY+++IP + +R+ +L +++R S+++S + VK ++ DK+ + Sbjct: 232 SRLLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIII 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSS 356 T N ++G E + V N M++ FN +Y +E + V+DDE+V +SS Sbjct: 292 T-SNTEIGAVREEIRVEVNGSNMEVGFNPRYFIEAL------RVIDDELVDIYFNSSVGP 344 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + DS Y+++P+RI Sbjct: 345 CTIRPLEGDS---------FAYMILPVRI 364 >gi|23097457|ref|NP_690923.1| DNA polymerase III subunit beta [Oceanobacillus iheyensis HTE831] gi|22775680|dbj|BAC11958.1| DNA-directed DNA polymerase III beta chain [Oceanobacillus iheyensis HTE831] Length = 378 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 178/352 (50%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R ++ + + + I + IP+ + ++ + + + S +I I IP Sbjct: 1 MRFTIQRDKLINGVSNVMKAISARTVIPILTGMKIEVKNHGVTLTGSDSDISIEYYIPIE 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 D G+I + A DIVRKL + + + +++L V I+ G + F L Sbjct: 61 EDGIVHVENIEEGTIILQAKYFPDIVRKLPE-STVDIVVDDQLN--VRITSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + + SFEL +LK+++++T FA++T E R L G+ + + L Sbjct: 118 QSAEEYPQLPKVQTENSFELPIDLLKSMIKQTVFAVSTMETRPILTGVNLKLVDNSLSFT 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A TD HRLA E+ + ++ I+VP K++ E+ +IL + +V++S++ ++I Sbjct: 178 A--TDSHRLARREIPVSNAPIEISQIVVPGKSLNELNKILGDSEETVEISVTNNQILFRT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 + L+ RL+DG +P +IP + ++++ L +DR S+++ R VK + Sbjct: 236 KHLNFLSRLLDGNYPETSRLIPEQSKTKIQLKTKELLGTIDRASLLAKEERNNVVKFNAP 295 Query: 292 SDKLC-MTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 + + ++ ++P++G +E + E + I F+ KY+++ + I DEV Sbjct: 296 GNSMIEISSNSPEVGNVVEEITADQMEGEDVKISFSSKYMIDALKAIEYDEV 347 >gi|160944265|ref|ZP_02091494.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii M21/2] gi|158444447|gb|EDP21451.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii M21/2] Length = 368 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 16/346 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I +++ + + + + +++IPV +LL+A L + E+ I I A+ Sbjct: 1 MNIVCDKTLLSAAIDGVSKAVTMRSSIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I ++A LL ++ ++ G QIS + T I G + F +QS P ++FP Sbjct: 61 IKEPGEIVLNAKLLSSMISRMPAG-QISIVAADNGKT--TIQSGVAQFEIQSMPATDFPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VL+++++RT +A++ +E + G F I + KL VA DG+R Sbjct: 118 LPNTGAEQTLTIKTGVLRDMIDRTLYAVSQDEKKPAHTGELFEIELD--KLTIVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 LA+ E I A K IIVP K + E+ +L++ D V +S + + ++ Sbjct: 176 LAIVERPITA--VKDIRIIVPSKTMTEVSHLLANDDEEDVHISANRRYVVFTTAGYTIMS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKL--- 295 RLI+GEF NY+NVIP + + ++ + ++R S++ + R++ +++S + K+ Sbjct: 234 RLIEGEFLNYRNVIPAGSRTRVTIDTKDFISTIERASLIITERLKNPLRISFTEGKVVVR 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 C T ++G+ ++ + ++I FN +YLL+ + N +++V Sbjct: 294 CQT----NLGRVVDEFSAACEGDEVEIGFNNRYLLDALRNARTEQV 335 >gi|327438161|dbj|BAK14526.1| DNA polymerase sliding clamp subunit [Solibacillus silvestris StLB046] Length = 378 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/359 (26%), Positives = 175/359 (48%), Gaps = 28/359 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +L L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFNILRDRLLAGLNDVMKAVSSKTTIPILTGIKIDVTNEGMTLTGSDADITIQTFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106 + GSI + A + +I+RKL NE+ E+ I G S Sbjct: 61 ENGEQIMDITQTGSIVLQARMYNEIIRKL---------PTNEVEIEITNGYATIIRSGKS 111 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 F+L +E+P E F + + +LK+++ T FA+AT E R L G+ + + E Sbjct: 112 EFHLIGLDATEYPQLPEIAADRQFTIPTDLLKSVIRETVFAVATSESRPVLTGVNWKV-E 170 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 D +C VATD HRLA +V++ + S+++P K++ E+ +IL ++ V++ L+ Sbjct: 171 GDALIC-VATDSHRLARRKVNLENLPNDITSVVIPGKSLNELNKILEDTNNPVQIVLTNQ 229 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQA 285 + + + RL++G +P+ +IP + +N +L QA+DR S+++ R Sbjct: 230 HVLFKTDDVLFFSRLLEGNYPDTSRLIPEEFKTMITINGKSLLQAIDRASLLAREDRNNV 289 Query: 286 VKL-SLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 V+ +L + + ++ ++P++GK E + V E + I F+ KY++E + I +VV Sbjct: 290 VRFETLENQTVEISSNSPEIGKVEEQIQVESLEGENLKISFSAKYMMEALKAIDGQDVV 348 >gi|328949542|ref|YP_004366877.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM 14884] gi|328449866|gb|AEB10767.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM 14884] Length = 361 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 96/365 (26%), Positives = 172/365 (47%), Gaps = 27/365 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + + E +G RII +++ PV + LQ + L ++ + E+++ + A Sbjct: 1 MRVRIPKRTLAEAIGILERIIPNRSSNPVITQLFLQGHSSGLTLRGTNGEVDLELTVTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115 + + V AHL IVR L G + +N+ E+ + G L + +PE Sbjct: 61 TEGADAFLVPAHLFGQIVRGL-PGELVELSADNQ---ELEVESGSFRTRLATATPEGYPE 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 F + E LA+ L + +A +TEE R G+ + L+ AVA Sbjct: 117 LTFDAPMEAR------LAAPELARALAHVRYAASTEEYRAIFRGVQLEFHPGALR--AVA 168 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 +DG RLA D+ + + ++VP ++ EI+R+L + V V ++E ++ L E+ Sbjct: 169 SDGFRLA--RYDLATRTEFVKKLVVPARSADEIIRVLKDTEGEVAVGVTEGKLVLASEAF 226 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 MSV L++GEFP+Y+ VIP E ++ LR+++ RV +++ + L D L Sbjct: 227 RMSVALMEGEFPDYERVIPQQFVGEAVLSAEALRESIKRVKVLADKNNHRIDLFFQGDAL 286 Query: 296 CMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D G+ E ++V P + + +N +YL D +S V+ +V RL Sbjct: 287 EVVAEG-DYGRGSERLSVQREGEPQLVLAYNAEYL---GDALSP---VEGQVRIRLSGPT 339 Query: 355 SSVFI 359 S I Sbjct: 340 SPTVI 344 >gi|220930852|ref|YP_002507760.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168] gi|219992162|gb|ACL68765.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168] Length = 367 Score = 125 bits (314), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/385 (24%), Positives = 191/385 (49%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 M+ T+ + D + R + KNT+P+ + L+A D L +KA+ E+ I + A Sbjct: 1 MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVKA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G I + A L I+R+L D I+F K + E ++ S F ++ F EFP Sbjct: 61 DIITEGKIVLPASHLSGIIRELPDD-NINF-KADLDKYEAELTCLSSRFKIKGFDADEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + L L L++ F+ +T++ + L G I+ +++ VAT+ + Sbjct: 119 QLPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVIDSGKIRM--VATNTY 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+++ +D+ +I+P + E+ +L D V++ + ++ + N + + Sbjct: 177 RLSLSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 R+I+G+FPNYQ V+P + ++RV+ NL ++V RVS+++ + + +S+ +K+ +T Sbjct: 236 RVIEGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + G A E + + +I + YLL+++ ++ DD V+ L + + + Sbjct: 296 QDSEEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLN-----DDVVILELIGPLNPLTL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + K+N + Y++MP+R Sbjct: 351 K---------KENSDDFIYLVMPVR 366 >gi|168335259|ref|ZP_02693360.1| DNA polymerase III subunit beta [Epulopiscium sp. 'N.t. morphotype B'] Length = 390 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 95/337 (28%), Positives = 176/337 (52%), Gaps = 17/337 (5%) Query: 13 LLGHACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 +L A I+ + ++T P+ +L+ A + L + + E+ I I + G I Sbjct: 31 ILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMGIEKTIEGEILENGKIA 90 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 + A L +I++K+ G I NE T++ I+ G S F LQ+ S FP+ + Sbjct: 91 IDAKLFSEIIKKMPQG-DIKMATINE--TQITITSGKSRFTLQTLDTSHFPTLPDVSLKQ 147 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 S ++ LKNL+++T F++A EE R L G F + E+ +L VA DG +A + + Sbjct: 148 SLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEV--ENGQLSLVAIDGFXIAFRTISL 205 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + + +I P K + EI +ILS++++ V + E+ I N+ ++ L++GEF Sbjct: 206 NNKNLSIEKVI-PAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVSXLLEGEFL 264 Query: 248 NYQNVIPCSNDKELR--VNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTVDNPDM 304 Y+++ SND E + VN +++R ++MS + ++ +++ D L +T N D+ Sbjct: 265 RYKDIF--SNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIIT-SNTDI 321 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 G ++E +++ P+ I FN +YL++ + NI DE+ Sbjct: 322 GNSLEEIDIILTGMPLKIAFNPRYLIDALKNIEDDEI 358 >gi|299541764|ref|ZP_07052087.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1] gi|298725502|gb|EFI66143.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1] Length = 378 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 99/358 (27%), Positives = 175/358 (48%), Gaps = 26/358 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +LE L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI V A + +IVRKL + +I G + +I G S F+L Sbjct: 61 EDGQQIIHITETGSIVVQARMFNEIVRKLPTNDVEIQVTP----GFQTHIRSGKSEFHLI 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P E F + + +LK ++ T FA+AT E R L G+ + I E L + Sbjct: 117 GSDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNETL-I 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 C VATD HRLA +V Q+ +P S+++P K++ E+ ++L + V++ ++ + Sbjct: 176 C-VATDSHRLARRKV----QLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQ 230 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + + RL++G +P+ +IP + +N +L QA+DR S+++ R V Sbjct: 231 VLFKTGDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVV 290 Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + L + + ++ ++P++GK E + V E + I F+ KY++E + I +VV Sbjct: 291 RFEILDNQAVEVSSNSPEIGKVQEEIPVEALEGEGLKISFSAKYMMEALKAIDGQDVV 348 >gi|228994209|ref|ZP_04154109.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442] gi|228995398|ref|ZP_04155070.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17] gi|229003012|ref|ZP_04160871.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4] gi|228758240|gb|EEM07426.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4] gi|228764351|gb|EEM13226.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17] gi|228765661|gb|EEM14315.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442] Length = 381 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 90/356 (25%), Positives = 179/356 (50%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVVTEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGHTISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ ++P++GK +E + E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDSTEI 350 >gi|226309589|ref|YP_002769483.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599] gi|226092537|dbj|BAH40979.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599] Length = 379 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 181/354 (51%), Gaps = 19/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M ITV+R + + H + + + TIP+ + ++ +D L + AS ++ I IP Sbjct: 1 MHITVQREKLSNAVSHVSKAVSSRTTIPILTGIKIKTDDEGLTLTASDSDVSIEVQIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +V GSI ++A + +IVRKL +I ++ L T+ I G + F + Sbjct: 61 EAGEWGVTVHQPGSIVLTARIFSEIVRKLPSN-EIDIQVDDRLATK--IRSGQAEFTING 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F + +LK ++ +T F ++T E+R L G+ + +++ L+ Sbjct: 118 MDANEYPQLPHLEEDKVFSVPCDLLKAMIRQTVFGVSTSEMRPILTGLMWSLDQGKLRF- 176 Query: 173 AVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRLA A V+ ++ +++VP K+ E+++IL + + +++++I + Sbjct: 177 -VATDSHRLASRTAMVECPEDLS-FHNVVVPGKSCNELVKILDDDQNLADIVVADNQILV 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL- 288 + + RL++G +P+ +IP + E+ V+ Q+++R S++S + VKL Sbjct: 235 KSKHILFYSRLLEGTYPDTTRIIPQGSKTEITVSTKEFLQSIERASLLSREGKSNVVKLV 294 Query: 289 SLSSDKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + +T + P++GK + M N + I FN KY+++ + I S E+ Sbjct: 295 TMPDGTVEITSNAPEIGKVTDILMPKAMNGEELKISFNAKYMIDALRAIDSAEI 348 >gi|313621670|gb|EFR92456.1| DNA polymerase III, beta subunit [Listeria innocua FSL S4-378] Length = 311 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 83/283 (29%), Positives = 156/283 (55%), Gaps = 14/283 (4%) Query: 65 GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G I + + DIVR+L ++ +I E + NIS G ++F L E+P E Sbjct: 3 GGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLNGLDPMEYPKLPE 58 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + ++ +VLKN++ +T FA++ E+R L G+ + I +D KL AVATD HRLA+ Sbjct: 59 VTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWII--KDNKLSAVATDSHRLAL 116 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 E+ + I + +I++P K++ E+ +IL S++++L+ ++I ++ L RL++ Sbjct: 117 REIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLE 176 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDN 301 G +P+ +IP EL +N QA+DR S+++ R +KL +L + ++ ++ ++ Sbjct: 177 GSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNS 236 Query: 302 PDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 P++G E NV+ + + I FN KY+++ + D++ Sbjct: 237 PEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 277 >gi|124024713|ref|YP_001013829.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. NATL1A] gi|123959781|gb|ABM74564.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. NATL1A] Length = 386 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 104/405 (25%), Positives = 204/405 (50%), Gaps = 41/405 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A++ G L + + I +I Sbjct: 1 MKLNCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS++ G+IT+ A L +IV KL + + + +E +V ++ + ++ +F Sbjct: 61 ASIESSGAITLPAKLFGEIVSKLSNDSPL-VLTSDETSQQVELTSKSGTYQVRGMVSDDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E SF+L +L N ++ T FA +T+E + L G+ ++ + + + ATDG Sbjct: 120 PDLPLVESGNSFKLNPLLLSNAIKSTLFASSTDEAKQLLTGV--NLTFDGYGIESAATDG 177 Query: 179 HRLAV----------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR- 227 HRLAV E+D + K SI +P K++ E+ + LS+ D S ++ + Sbjct: 178 HRLAVLNLNNILSDSKEIDSSTKFEKF-SITLPSKSLREVEKFLSTCDISQPINFFVDKG 236 Query: 228 --IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + +++E + +++R ++G +PNY ++P + + EL + +++R+++++ Sbjct: 237 QVVFISVEDI-ITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNV 295 Query: 286 VKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 +K++ S++ + ++ D D+G ES+ V Y I FN +YLL+ + +V+D Sbjct: 296 IKVTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGL------KVID 349 Query: 344 DEVVFRL---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +L + +VF S N D VN Y++MP++I Sbjct: 350 SNLI-KLSCNSPTTPAVF-------SPINSD--VNFTYLVMPIQI 384 >gi|320120270|gb|EFE27943.2| DNA polymerase III, beta subunit [Filifactor alocis ATCC 35896] Length = 363 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 102/395 (25%), Positives = 196/395 (49%), Gaps = 43/395 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV + + + L A + I K + + L+A + L I + EI I +I A+ Sbjct: 2 MKFTVNQREFSDALAIASKAIISKTPLDILKGFYLEAYENELTITGNNLEIGIRTSIDAA 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN---------FYLQ 111 V+ G + A +L DI+RKL + EV +S D N F ++ Sbjct: 62 VETEGKSVIDAKILSDIIRKLPN-------------EEVTVSIKDGNVLLQCQKLKFTIK 108 Query: 112 SFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 ++ FP+ E EE VY + ++L+ ++++THFA+ T+E + G + ED + Sbjct: 109 EMLDNGFPTVDELEEAVYQ-NIHPAILEEMIKKTHFAVTTDETKPVFMGELVEL--EDNQ 165 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 + +A DG RLA + ++ + + S+I+P K + EI+R+ + + VK+ + + Sbjct: 166 MNVIALDGFRLAYKKCELKSSVGSR-SMIIPGKTMVEIMRLCQTMEEDVKIGIEDRHASF 224 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ +LI GEF Y+ +IP +++VN A+DR +++S + VKL + Sbjct: 225 LFGRTLVNTQLIQGEFSKYEEIIPKEFSTKIKVNRQKFIDALDRATLVSKNYL--VKLRI 282 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +D+L +T + ++G E ++V ++I FN ++ L+ S +V++DE ++ Sbjct: 283 QNDELLITAHDNEVGNLEEILDVELEGKNLEIAFNIRFFLD------SLKVMEDEYIYMN 336 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++N S I + ++ + Y+++P+RI Sbjct: 337 FNTNVSPCIIKPEFET--------DYTYLVLPVRI 363 >gi|124021715|ref|YP_001016022.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9303] gi|123962001|gb|ABM76757.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9303] Length = 388 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 98/402 (24%), Positives = 198/402 (49%), Gaps = 33/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I A+ Sbjct: 1 MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ +E G +V + ++ ++ +F Sbjct: 61 ASVESSGAITLPARLLGEIVSRLSSDSPITL-ATDEAGEQVELKSLSGSYQMRGMSADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + ++ + L + T FA +++E + L G+ H + + ++ A ATDG Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKAME--AAATDG 177 Query: 179 HRLAVAEV----DIVAQIAKMP-------SIIVPRKAVGEILRILSSKDSSVKVSL--SE 225 HRLAV + D+ ++ ++ +P +++ E+ R+++ S +VSL + Sbjct: 178 HRLAVLSLADALDVETTLSSDTDDEGENFAVTLPSRSLREVERLIAGWRSDDQVSLFCDK 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ R +DG +PNY+ +IP + V+ A++R+++++ Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFISALERIAVLADQHNNV 297 Query: 286 VKLS--LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 VK+S +S+ L ++ D D+G ES++ + + I FN +Y+L+ + + S Sbjct: 298 VKVSGDSTSELLQISADAQDVGSGSESLSAEFTGDSVQIAFNVRYVLDGLKVMDS----- 352 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V R ++ + I KD D + Y++MP++I Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386 >gi|73661311|ref|YP_300092.1| DNA polymerase III subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493826|dbj|BAE17147.1| DNA polymerase III beta subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 376 Score = 125 bits (313), Expect = 1e-26, Method: Compositional matrix adjust. Identities = 94/376 (25%), Positives = 187/376 (49%), Gaps = 21/376 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R + L + I + T+P+ + ++ + + + S EI I IP Sbjct: 1 MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIEVKNNEVILTGSDSEISIEITIPKQ 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T I+ G S F L Sbjct: 61 VDGEDIIDIVETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTL--ITSGHSEFNLSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E +L +C Sbjct: 118 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV +V + ++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 T-ATDSHRLAVRKV-ALEDDSENKNVIIPGKALSELNKIMSDSEEDIDIFFASNQVLFKV 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 294 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + + + I FN KY+++ + I +DEV EV F Sbjct: 295 NELVELSSTSPEIGTVKEDVKASNVDGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 350 Query: 351 DSSNSSVFIRGKDKDS 366 + ++ KD DS Sbjct: 351 -GTMKPFILKPKDDDS 365 >gi|239825586|ref|YP_002948210.1| DNA polymerase III subunit beta [Geobacillus sp. WCH70] gi|239805879|gb|ACS22944.1| DNA polymerase III, beta subunit [Geobacillus sp. WCH70] Length = 378 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 92/358 (25%), Positives = 175/358 (48%), Gaps = 28/358 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++R +++ + + + + TIP+ + + A + + S +I I IP Sbjct: 1 MKIKIDREALVQSVQDVMKAVSPRTTIPILTGIKIAATSQGVTLTGSDSDISIESFIPTE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106 V+V GSI + A +IV+KL EN + EV I G + Sbjct: 61 EEDKVLVEVVETGSIVLQARFFSEIVKKL---------PENTIEIEVQPNFLTVIRSGKA 111 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 F L E+P + E F++ + +LK ++ +T FA++T E R L G+ + + Sbjct: 112 EFSLNGLDAEEYPRLPQIEEENVFKIPTDLLKTIIRQTVFAVSTSETRPILTGVNWRV-- 169 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 ED +L ATD HRLA+ + I + + ++++P K++ E+ +IL + V + ++ + Sbjct: 170 EDGELICTATDSHRLALRKAKIETENQQSYNVVIPGKSLNELSKILDDSNDPVDIVITAN 229 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQA 285 +I + L RL+DG +P +IP + ++ VN QA+DR S+++ R Sbjct: 230 QILFKTKHLLFFSRLLDGNYPETTRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNV 289 Query: 286 VKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 VKL+ +D + ++ +P++GK E + E + I F+ KY+++ + + ++ Sbjct: 290 VKLTTLNDGIIEISSISPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTDI 347 >gi|288800440|ref|ZP_06405898.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332653|gb|EFC71133.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 374 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 12/347 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK + + + L ++I KNT+P+ L + ND +L I S E + +P Sbjct: 1 MKFKLSSTSLNNSLQTLAKVIASKNTLPILESFLFEVNDNVLTITGSDNENVMRTTLPLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ---SFPES 116 D G I + + D+V++L + N EV +G NF Q ++P+ Sbjct: 61 ESDGDGVIAIPSRTTLDVVKELPEQPLAFDIDTNNFNVEVTYQNGKYNFTAQDGTAYPKP 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E S E + +++L + R+ FA+ ++++R +NG++F + L + VA+ Sbjct: 121 EGVS----EGTSVITIPANILNANITRSMFAVGSDDMRPVMNGLYFDLQTTGLSI--VAS 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGH+L + + A + I+P+K + +L +S V + + +N S + Sbjct: 175 DGHKLVRNVISTITG-ATPAAFILPKKPATLLKNVLPKDNSDVVIKFGTNCAEINFASGT 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ RLI+G +PNY +VIP SN ++ ++ +L A+ RV +S Q ++ L + KL Sbjct: 234 LTCRLIEGRYPNYSSVIPESNPNQVTIDRLSLLGALRRVLPFASESTQLIRFKLEAGKLE 293 Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ ++ D A E++N Y M I F + +I++++ SDEV Sbjct: 294 ISSEDIDFSTSAKEAVNCDYTGNNMSIGFKGGSMTDILNSLESDEVT 340 >gi|72383165|ref|YP_292520.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. NATL2A] gi|72003015|gb|AAZ58817.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. NATL2A] Length = 386 Score = 125 bits (313), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 100/403 (24%), Positives = 201/403 (49%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK++ +S++ L R + + T PV +VLL A++ G L + + I +I Sbjct: 1 MKLSCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS+D G+IT+ A L +IV KL + + + +E +V ++ + ++ +F Sbjct: 61 ASIDSSGAITLPAKLFGEIVSKLSNDSPL-VLTSDETSQQVELTSKSGTYQVRGMLSDDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E SF+L +L N ++ T FA +T++ + L G+ ++ + + + ATDG Sbjct: 120 PELPLVENGTSFKLNPLLLSNAIKSTLFASSTDDAKQLLTGV--NLTFDGYGIESAATDG 177 Query: 179 HRLAV----------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR- 227 HRLAV E+D + K SI +P K++ E+ + LS+ D S ++ + Sbjct: 178 HRLAVLNLNNILSDSKEIDSSIKFEKF-SITLPSKSLREVEKFLSTCDISHPINFFIDKG 236 Query: 228 --IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + +++E + +++R ++G +PNY ++P + + EL + +++R+++++ Sbjct: 237 QVVFISVEDI-ITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNV 295 Query: 286 VKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 +K++ S++ + ++ D D+G ES+ V Y I FN +YLL+ + +V+D Sbjct: 296 IKVTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGL------KVID 349 Query: 344 DEVV-FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +S + + D VN Y++MP++I Sbjct: 350 SNLIKLSCNSPTTPAIFSPINSD--------VNFTYLVMPIQI 384 >gi|23193192|gb|AAN14421.1|AF319579_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 381 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 184/358 (51%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQTGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ + P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|229065150|ref|ZP_04200443.1| DNA polymerase III subunit beta [Bacillus cereus AH603] gi|228716179|gb|EEL67898.1| DNA polymerase III subunit beta [Bacillus cereus AH603] Length = 381 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 184/358 (51%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ + P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|323463202|gb|ADX75355.1| DNA polymerase III, beta subunit [Staphylococcus pseudintermedius ED99] Length = 377 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 61 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T + +H S F L Sbjct: 62 VDGQEIINVVEPGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTLITSAH--SEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L VLKN++ +T+FA++T E R L G+ + I + +L LC Sbjct: 119 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNEL-LC 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +I ++I+P KA+ E+ +I++ + + + + +++ + Sbjct: 178 T-ATDSHRLAVRKLKLEEEIEDK-NVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 ++ ++ +P++G E + E + I FN KY+++ + I ++EV Sbjct: 296 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNEEV 346 >gi|154496127|ref|ZP_02034823.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC 29799] gi|150274682|gb|EDN01746.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC 29799] Length = 370 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 106/389 (27%), Positives = 184/389 (47%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK T E++ + + + R + K++IP +LL+A E++ +G +E I +P Sbjct: 1 MKFTCEKALLQSAISTSSRAVSPKSSIPALEGILLEAGS---ELRLTGYNLETGIRTVVP 57 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + GS+ +SA L +I+RKL D I F EN + VNI G S F + EF Sbjct: 58 ADIQAKGSLVLSARLFGEIIRKLPDDTVI-FTAENYM---VNIKCGMSEFNILGTDPEEF 113 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P EY SF + LK ++ +T FA++ E R G F ++E L + V+ DG Sbjct: 114 PELPTVEYQNSFVITQERLKAMIGQTLFAVSDNESRPIHTGSLFEVDENGLTV--VSVDG 171 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RLA+ I + + S +VP A+ E+ +I S D V+ + + + Sbjct: 172 YRLALRHEPIDKKEGEASFSFVVPGAALSEVEKICSQVDEPASVTQGARHVMFKVGDTML 231 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 R ++GEF Y+ +P +N + + L ++DRVS++ S ++++ + + L Sbjct: 232 VARRLEGEFLAYRQAVPRNNPIHIEGDTRALLSSIDRVSLIISDKLKSPLRCIFEENLLK 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD-SSNSS 356 +G A + V + ++I FN KYL++ + +D V RL+ S+ S Sbjct: 292 ISTKTAIGDARDECPVSGDGKGLEIGFNNKYLMDALKAAPADRV-------RLELSTGVS 344 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D N Y+++P+R+ Sbjct: 345 PCVILPD-------DGGDNFLYMVLPVRL 366 >gi|302345412|ref|YP_003813765.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC 25845] gi|302150115|gb|ADK96377.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 374 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 96/370 (25%), Positives = 183/370 (49%), Gaps = 23/370 (6%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75 R+I KN++P+ L + +DG L I AS E + G + +++ C G+ V+ H + Sbjct: 19 RVINSKNSLPILDCFLFEVHDGQLIITASDSENVMRGTL--NLESCEGEGNFAVNNHTIL 76 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134 D V++L + +E+ V +G NF + E+P + + + L + Sbjct: 77 DAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPI--LGADEYPKAQSVSDNATTITLQA 134 Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 L + + R+ FA A +E+R +NG++F + E+ L + VA+DGH+L ++ + + Sbjct: 135 EKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDGLAI--VASDGHKLVRNKIFSIKSDSP 192 Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 S ++P+K + +LS V + E ++ +++ RLI+G++PNY +VIP Sbjct: 193 A-SFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLACRLIEGKYPNYNSVIP 251 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313 N ++ ++ +L A+ RV +S Q ++ +S L + ++ D A ES+ Sbjct: 252 QDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSVGLLELNAEDIDFATSAKESVTC 311 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 Y PM I F +L+I++N+ SD+V V+ D S + V + G +++ Sbjct: 312 EYGGNPMSIGFKGSSMLDILNNLESDDV----VIQLADPSRAGVIVPGTQPENE------ 361 Query: 374 VNAFYVLMPM 383 + ++MPM Sbjct: 362 -DILMLIMPM 370 >gi|319893739|ref|YP_004150614.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317163435|gb|ADV06978.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius HKU10-03] Length = 376 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 1 MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL G ++ + T + +H S F L Sbjct: 61 VDGQEIINLVEPGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTLITSAH--SEFNLSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L VLKN++ +T+FA++T E R L G+ + I + +L LC Sbjct: 118 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNEL-LC 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +I ++I+P KA+ E+ +I++ + + + + +++ + Sbjct: 177 T-ATDSHRLAVRKLKLEEEIEDK-NVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N ++ A+DR S+++ +KLS Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 294 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 ++ ++ +P++G E + E + I FN KY+++ + I ++EV Sbjct: 295 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNEEV 345 >gi|163938015|ref|YP_001642899.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4] gi|229136316|ref|ZP_04265063.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196] gi|163860212|gb|ABY41271.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis KBAB4] gi|228647188|gb|EEL03276.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196] Length = 381 Score = 124 bits (312), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 184/358 (51%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ + P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|189501610|ref|YP_001957327.1| DNA polymerase III subunit beta [Candidatus Amoebophilus asiaticus 5a2] gi|189497051|gb|ACE05598.1| DNA polymerase III, beta subunit [Candidatus Amoebophilus asiaticus 5a2] Length = 372 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 95/367 (25%), Positives = 180/367 (49%), Gaps = 12/367 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ S + + L + IP+ + L + +G L+I AS + I + Sbjct: 1 MKFSISSSTLYKHLVALYGAVVSNPLIPILENFLFEITNGKLKITASDLQTSIITELELD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V S+ V A +L D ++ L + ISF+ + + + ++I + L ++FP Sbjct: 61 VKGETSVAVPARILLDTLKNLPEQP-ISFYIDESVYS-ISIKSDTGQYNLAGENATDFPQ 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S +L + +LK +++T A + +E++ +NG++ + E+ VATD HR Sbjct: 119 IPEVAAKTSIQLPADILKRAIQQTIIATSHDELKPAINGMYMNFKEDAFTF--VATDIHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + + P I+PRK + + +L + V++S + +H I ++ M R Sbjct: 177 LIRYTRNNITAAEQAP-FILPRKTLMLLNGLLPTDKQEVEISFGSNNVHFKIANVRMVSR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+NVIP +N +LR+N L ++ R+ I ++ VK +L L + + Sbjct: 236 LIDERYPDYENVIPKNNPHKLRINRMALLTSLKRIIIYTNKITHQVKFTLGEQNLEILAE 295 Query: 301 NPDM-GKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + KA E ++ Y + ++I FN K L+E+++N+ + DEV F N + Sbjct: 296 DFNFDNKAKEQLSCEYVGDASLEIGFNAKSLIEMLNNLQA-----DEVNFHFSQPNKAAV 350 Query: 359 IRGKDKD 365 I D++ Sbjct: 351 IIPNDQE 357 >gi|261368843|ref|ZP_05981726.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM 15176] gi|282569113|gb|EFB74648.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM 15176] Length = 369 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 12/334 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK E+S + + R I ++ IPV + L+A L + E+ IT I + Sbjct: 1 MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIECN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V V G + A LL +V ++ G +I E + IS G + F + + S++P Sbjct: 61 VLVPGETVLEAKLLLSMVSRMPAGDVRIELTDEGQ----AIISGGVAEFEIPALNASDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + + +S+++ L+E+T +A++ ++ + G F I E L VA DG+ Sbjct: 117 SLPVTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVI--EPGSLTIVALDGY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + D+ + + II+P K + E+L+I+ D VK+ + + ++ Sbjct: 175 RLAIIQRDV--ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMS 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 RLI+G+F NY++VIP N + V+C ++R S++ + R++ +++S + DK+ + Sbjct: 233 RLIEGDFLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVR 292 Query: 299 VDNPDMGKAIESM-NVYYNECPMDICFNYKYLLE 331 P +GK ++ V P++I FN +YLL+ Sbjct: 293 CQTP-LGKVVDEFPPVAMTGDPVEIGFNNRYLLD 325 >gi|210624035|ref|ZP_03294152.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275] gi|210153242|gb|EEA84248.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275] Length = 368 Score = 124 bits (311), Expect = 2e-26, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 166/325 (51%), Gaps = 11/325 (3%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIV 78 + I + TI + +LL +G L++ S EI I + + ++ G I + A L DIV Sbjct: 19 KAINSRTTIELLKGILLSTENGALKLTGSDAEIRIETFVQSEIEEDGKIVLDAKLFGDIV 78 Query: 79 RKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137 RKL D SF + E + V+I +S F ++ E+P+ + E + + +L Sbjct: 79 RKLPD----SFVQIETDANNNVHIYCENSRFTIKGHSAEEYPAFSDVEESEMYSIPQELL 134 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 K+++++T FA++ ++ + L G E+ K VA DG+RLAV I K Sbjct: 135 KDMIKQTSFAISQDQTKPVLMGELLE--AENGKASLVAIDGYRLAVRSCSI-DSFTKDIK 191 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +I+P K + +I +++ + S+ V +E + + RL++G+F +Y ++P Sbjct: 192 VIIPGKTLVDINSLMTG-EGSINVGFTEKNAVFMLGDTKVVTRLLEGDFIDYSRLLPKEY 250 Query: 258 DKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + +++ L +++R S++S S R +KLS+ D + +T N D G E +++ Sbjct: 251 NSRIKLKSKALLNSIERASLLSQSERNNLIKLSIRDDAMVIT-SNTDRGNVYEEVSLELE 309 Query: 317 ECPMDICFNYKYLLEIIDNISSDEV 341 +DI FN +YL+E + NI S+E+ Sbjct: 310 GEYLDIAFNSRYLMEGLKNIDSEEI 334 >gi|319936679|ref|ZP_08011092.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1] gi|319808236|gb|EFW04801.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1] Length = 367 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 182/344 (52%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R +L L R + K+ +PV + D L + S +I I +I + Sbjct: 1 MNFKIKRLALLNALAKVSRAVSMKSPLPVLTGIKFDLKDNELILTGSDSDITIQTSIKEN 60 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +++ GS+ +S+ + +I++K+ D + + + GT I +S F L ++ Sbjct: 61 IEIIQTGSVVLSSRYILEIIKKI-DSEFVHIYIVD--GTLTRIEGANSKFDLNGTSYIDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + ++ S+ LK +E+T FA + +E R L G+ F +D L +ATD Sbjct: 118 PRIDLNKSGVHLQMKSTDLKQAIEQTSFATSEKETRPVLTGVNF--KAKDHVLECIATDS 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA + I + ++ +II+P+K++ EI RI+ KD + + +S+ ++ +S+ + Sbjct: 176 YRLAKRILTIDSDVS--FNIIIPKKSLIEISRIIE-KDEFIDLYVSDRKVLFIFDSVLIQ 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG +P+ +IP ++ + V+ +L ++DR S++S+ + +KLS+S D + ++ Sbjct: 233 TRLIDGSYPDTSRLIPHEHNYSMSVDSVSLLNSIDRASLLSNEQTNIIKLSMSEDHVMLS 292 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++G E+++ +Y + I F+ KYL + I +I+ ++V Sbjct: 293 SYSQEIGSVEENLSKAFYKGDELSISFSAKYLNDAIKSINGEKV 336 >gi|169825623|ref|YP_001695781.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41] gi|168990111|gb|ACA37651.1| DnaN [Lysinibacillus sphaericus C3-41] Length = 378 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 174/358 (48%), Gaps = 26/358 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +LE L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI V A + +I+RKL + +I G + +I G S F+L Sbjct: 61 EDGQQIIHIAETGSIVVQARMFNEIIRKLPTNDVEIQVTP----GFQTHIRSGKSEFHLI 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P E F + + +LK ++ T FA+AT E R L G+ + I E L + Sbjct: 117 GSDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNETL-I 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 C VATD HRLA +V Q+ +P S+++P K++ E+ ++L + V++ ++ + Sbjct: 176 C-VATDSHRLARRKV----QLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQ 230 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + + RL++G +P+ +IP + +N +L QA+DR S+++ R V Sbjct: 231 VLFKTGDVLFFSRLLEGNYPDTSRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVV 290 Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + L + ++ ++P++GK E + V E + I F+ KY++E + I +VV Sbjct: 291 RFEILGHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQDVV 348 >gi|239618231|ref|YP_002941553.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1] gi|239507062|gb|ACR80549.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1] Length = 367 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 97/388 (25%), Positives = 185/388 (47%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEI-TGAIP 58 M+ ++ R++ L L + K P+ +L + A D LE+ A+ E I T P Sbjct: 1 MRFSIPRNEFLTRLESVSTAVASKTVKPILSGILFRTAEDSKLELIATDLETSIKTYVQP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + G V A +L +I+R L DG F++ T + I S F L + EF Sbjct: 61 SEISGTGQFVVDAKVLLEIMRNLPDGKVFFEFQD----TNLVIRMEKSRFVLPTMSGEEF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + + E + + L+ +++R F A +E LNG+++ + L+L VA DG Sbjct: 117 PEVEPAQGGWELETSVTALEIMIDRVLFCAAKDEFMRNLNGVYWELEGGYLRL--VAADG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM 237 RLA+AE + ++ K++ ++ + + S +K+ +R+ + M Sbjct: 175 FRLALAEEKTNQNLED--HFLLTLKSMKDLQSSIKTAGSDDMKIVYDGTRVGFYFDGTEM 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 R+++ +FP+Y+ V+P + + N ++L A+ R SI + + ++K+ + D + + Sbjct: 233 VARVVEADFPDYKKVLPKAFKTRVVANTSSLSDAIRRASIAARLGSDSIKIEIKEDNMKL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +PD G++ E + + + + I FN K+LLE I ++EV E+ F SNS + Sbjct: 293 IAKSPDHGESSEELEIKKDGEDLIIAFNPKFLLEATKKIDTEEV---ELNFV--DSNSPL 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + Y++MP+R+ Sbjct: 348 QMNPVDVE---------GYLYIIMPIRL 366 >gi|227432905|ref|ZP_03914849.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351338|gb|EEJ41620.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 378 Score = 124 bits (311), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 18/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ RS ++ L R I + TIP+ ++ L ND L + S EI I +P S Sbjct: 1 MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNAEISIETTVPQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV++L + A N G I+ G S+F + Sbjct: 61 DTSAQLIITTPGGITLPATFFINIVKRLPNDA----MTLNVEGLRATITSGASSFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI + +K A Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGNRVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V TD HRL+ V + A ++I+P K+ E+ +L +D V++ S ++ + Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + + RL++G +P +IP + ++ + ++L A+DR S++S R V+LSL Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 + + +T + ++G+ E +N E ++I FN Y+ Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYV 333 >gi|189218019|ref|YP_001938661.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum V4] gi|189184877|gb|ACD82062.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum V4] Length = 371 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 112/394 (28%), Positives = 194/394 (49%), Gaps = 35/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLL--QANDGLLEIKA---SGPEIEITG 55 MK +VE+ ++ L II ++T+P+ HVLL +A D LL + +IE+T Sbjct: 1 MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELT- 59 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 A+V+ G+ T+ A L IVR+L D Q+S+ K N + +S S F L P+ Sbjct: 60 ---ANVEEEGTTTLPARRLLTIVREL-DSDQLSW-KTNS-NHQTTLSSDRSFFQLNGLPD 113 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E ++ ++ ++ +AMA +E R LNG +F I ++ Sbjct: 114 DDYPKFFPERREEGLSISQGKIRKMLRMVEYAMA-DESRPALNGAWFSIKSGRFEVAV-- 170 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDG RLA ++ + + I VP KAV EI RI+ D ++K+ L ++I L ++++ Sbjct: 171 TDGKRLAYTFEEVENESFEAEGI-VPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNI 229 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS---IMSSVRIQAVKLSLSS 292 +L +G++PN++ VIP + ++ ++ + A+ RVS I S + V L + Sbjct: 230 LFFSKLTEGKYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGT 289 Query: 293 DKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++L ++ P++G+A E S+ + E I FN YL+E + + ++V+ E V Sbjct: 290 NELVLSCQAPEIGQARETISLKAFQGEA-FSIPFNPLYLIEPLREMEKEDVI-LEFVNPS 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N + G N YVLMP++ Sbjct: 348 TKGNPCLITEG------------TNFVYVLMPIK 369 >gi|222099398|ref|YP_002533966.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359] gi|221571788|gb|ACM22600.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359] Length = 366 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 95/347 (27%), Positives = 187/347 (53%), Gaps = 18/347 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ + + A + + +K+ PV L + +G I A+ E TG + AS Sbjct: 1 MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLE---TG-VKAS 56 Query: 61 VDVCGSITVSAHLLY--DIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115 V+ C I+ A + D+++KL ++ + EL G + I+ G + F + + P Sbjct: 57 VN-CAEISGDARFVVPGDVLQKL---VKVLPDETTELSLEGDNLVITSGSTVFRITTMPA 112 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E SFE+ +S+L+ +VE+ FA AT+E LNG+F+ +++ L+L VA Sbjct: 113 DEFPDIAPAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRL--VA 170 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIES 234 +DG RLA+AE + + + ++ K++ E+ +L+ + + +V V R+ L Sbjct: 171 SDGFRLALAEE--QIENEEETNFLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTND 228 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +R++D EFP+Y+ VIP + ++ V+ +L++++ RV +++S ++VK + + Sbjct: 229 VETVMRVVDAEFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENT 288 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + +PD G+ I+ + V + I FN K++++ + I ++E+ Sbjct: 289 MRLVSRSPDYGEVIDELEVQKEGEDLIIAFNPKFIVDALRRIETEEL 335 >gi|330995700|ref|ZP_08319598.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT 11841] gi|329574759|gb|EGG56320.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT 11841] Length = 374 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/348 (27%), Positives = 171/348 (49%), Gaps = 14/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V S + L R+I KNT+P+ L + D +L I AS E + ++ Sbjct: 1 MKFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITSLELV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS---FPE 115 D ++A + D ++++ + +SF + + N +G N QS +PE Sbjct: 61 ESDANTRFCINAKTIQDSMKEIAE-QPLSFDINPDNMEITANYQNGRFNIVGQSADEYPE 119 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 P +E + + + + N + R FA A +E+R +NG++F I ++L V+ Sbjct: 120 MNLP----QEDMKGLVIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VS 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGH+L V + + + + I+P+K + +L + V + +E ++ +ES Sbjct: 174 TDGHKL-VRNRNYTIKGDQPAAFILPKKPATILKNLLPKESDDVTLRFNERNAYITMESS 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RLI+G +PNY +VIP +N + V+ L A+ RV I S+ +KL L S++L Sbjct: 233 RIICRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQL 292 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + D A E + Y + PM+I F +L++I++N+ + V+ Sbjct: 293 VVSGQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGGENVI 340 >gi|169627110|ref|YP_001700759.1| DNA polymerase III subunit beta [Mycobacterium abscessus ATCC 19977] gi|169239077|emb|CAM60105.1| DNA polymerase III, beta subunit (DnaN) [Mycobacterium abscessus] Length = 399 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 105/402 (26%), Positives = 185/402 (46%), Gaps = 34/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R D + + R + + T+PV VLL A+D L + E+ +PA Sbjct: 13 LKFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGFDYEVSAQVKVPAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 V G+ VS LL DI R L + + E GT + IS G + F L S P ++ Sbjct: 73 VAAAGNALVSGRLLSDITRSLPN-KPVDVALE---GTRLLISCGSAKFSLPSMPVEDYPA 128 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 PS EE + L + V + + A ++ L GI IN + + L ATD Sbjct: 129 LPSLPEE----TGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEINGDTVVLA--ATD 182 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSL-------SESRIH 229 RLAV E++ + + +++VP K + E + SS S V+++L SE + Sbjct: 183 RFRLAVRELNWTSGSGETSAAVLVPAKTLSEAAKSASSG-SDVQLALGAGSAIGSEGLLG 241 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + + RL+D EFP ++ ++P + + + L +A+ RV++++ R ++L Sbjct: 242 IVSDGKRSTTRLLDAEFPKFRQLLPTEHTALATIAISELVEAIKRVALVAD-RGAQIRLE 300 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F Sbjct: 301 FEPGLLRLSAGADDVGRAEEELEVEFVGEPLTIAFNPTYLTDGLGSLHS-----NRVTFG 355 Query: 350 LDSSNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + +R D D + + + + + Y+LMP+R+ Sbjct: 356 FTTPSRPAVLRPADDDQSSPEGSGPFTAAQTDYVYLLMPVRL 397 >gi|229170194|ref|ZP_04297880.1| DNA polymerase III subunit beta [Bacillus cereus AH621] gi|228613295|gb|EEK70434.1| DNA polymerase III subunit beta [Bacillus cereus AH621] Length = 381 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 183/358 (51%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIKQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ + P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|229014657|ref|ZP_04171771.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048] gi|228746668|gb|EEL96557.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048] Length = 381 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 94/358 (26%), Positives = 183/358 (51%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIKQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ + I IA ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 LS L L ++ + P++GK +E + NV E + I F+ KY+++ + + S E+ Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350 >gi|327475233|gb|AEA77211.1| DNA polymerase III beta subunit [Bacillus sp. 15.4] Length = 361 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 169/336 (50%), Gaps = 18/336 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC--------GSITV 69 + + + TIP+ + + A D + + S +I I IP D G I + Sbjct: 1 MKAVTSRTTIPILTGIKIIATDEGVTLTGSDSDISIESFIPTEEDGNEIVEVIEKGGIVL 60 Query: 70 SAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 A +IV+KL D +I +N L T I G + F L E+P + E Sbjct: 61 QAKFFSEIVKKLPMDTVEIEV--QNHLQT--VIRSGKAEFNLNGLDPEEYPHLPQIEEGN 116 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 +F++ + +LK +V +T FA++T E R L G+ + + E+ +L +ATD HRLA+ + + Sbjct: 117 AFKVPTDLLKTMVRQTVFAVSTSETRPILTGVNWRV--ENGELSCIATDSHRLAMRKAPL 174 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 + +I++P K++ E+ +IL V++ ++++++ + L RL++G +P+ Sbjct: 175 ESDTGNEYNIVIPGKSLTELSKILDDNSEPVEIVITDNQVLFKAKHLLFFSRLLEGNYPD 234 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS-LSSDKLCMTVDNPDMGK 306 +IP + EL + QA+DR S+++ R VKLS + S + ++ + P++GK Sbjct: 235 TSRLIPNESKTELVLATKEFLQAIDRASLLAREGRNNVVKLSTVESGVIEISSNTPEIGK 294 Query: 307 AIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 IE + NE + I F+ KY+++ + + E+ Sbjct: 295 VIEQVQSQSNEGEELKISFSAKYMMDALKALEGTEI 330 >gi|254432559|ref|ZP_05046262.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001] gi|197627012|gb|EDY39571.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001] Length = 466 Score = 124 bits (310), Expect = 3e-26, Method: Compositional matrix adjust. Identities = 103/403 (25%), Positives = 193/403 (47%), Gaps = 35/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++P Sbjct: 79 MKLVCSQTELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 138 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A L +IV +L I+ + + G +V++ N+ ++ P +F Sbjct: 139 ASVEASGAITLPARLFGEIVSRLSAEGPITI-QSPDGGEQVDLISLSGNYQMRGMPAEDF 197 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + L + L + T FA + +E + L G+ ++ L+ CA ATDG Sbjct: 198 PDLPLVQSGQPIRLDADALVKGLRATLFASSGDEAKQLLTGVHLRLDAGALE-CA-ATDG 255 Query: 179 HRLAV---AEVDIVAQIAKMP---------SIIVPRKAVGEILRILSSKDSSVKVSL--S 224 HRLAV A + A+ + ++ VP +++ E+ R+LSS+ S +SL Sbjct: 256 HRLAVLKLAHGEAPAETSDDAADQADGDPFAVTVPARSLRELERLLSSRQSEEPLSLFCE 315 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 ++ ++ R +DG +PNY +IP S + + + L A++RV++++ Sbjct: 316 RGQVVFLWSDQVLTSRSLDGTYPNYPQLIPDSFVRSISSDRRALIAALERVAVLADQHNN 375 Query: 285 AVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 VKL+ +S L + D D+G+ ES+ + I FN +YLL+ + ++S Sbjct: 376 VVKLTADPASGTLQVQADAQDVGRGSESVPAVIEGESLQIAFNVRYLLDGLKAMAS---- 431 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++VV ++ + +R D Y++MP++I Sbjct: 432 -EQVVLHCNAPTTPAVLRPGDASGFT---------YLVMPVQI 464 >gi|148269798|ref|YP_001244258.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1] gi|281412318|ref|YP_003346397.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10] gi|147735342|gb|ABQ46682.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1] gi|281373421|gb|ADA66983.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10] Length = 366 Score = 124 bits (310), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 180/347 (51%), Gaps = 18/347 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITV ++ + + A + + +K+ P+ L + DG I + E + + A+ Sbjct: 1 MKITVTTLELRDKITIASKALAKKSVKPILAGFLFEVKDGNFYICTTDLETGVKATVNAA 60 Query: 61 VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPE 115 ++ G V ++ +V+ L D EL E + IS G + F + + P Sbjct: 61 -EISGEARFVVPGDIIQKLVKVLPDEI-------TELSLEGDVLVISSGSTVFRITTMPA 112 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E +FE+ S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA Sbjct: 113 DEFPEITPAESGITFEVDISLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VA 170 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIES 234 +DG RLA+AE + + S ++ K++ E+ +L ++ + ++ V R+ L Sbjct: 171 SDGFRLALAEE--QIENEEETSFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLTTND 228 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +R++D EFP+Y+ VIP + ++ V+ +L +++ RV +++S ++VK + + Sbjct: 229 VETVMRVVDAEFPDYKRVIPETFKTKVVVSRKDLMESLKRVMVIASKGSESVKFEIEENV 288 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + +PD G+ I+ + V + I FN K++ +++ +I ++E+ Sbjct: 289 MRLVSKSPDYGEVIDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 335 >gi|327475231|gb|AEA77210.1| DNA polymerase III beta subunit [Bacillus aquimaris] Length = 378 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R +++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MKFVIQREALVQSVQDVMKAVTSRTTIPILTGIKIIATEEGVTLTGSDSDISIESFIPKE 60 Query: 61 ------VDVC--GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V++ G I + A +IV+KL +D +I +N T I G + F L Sbjct: 61 EEGSEIVEIMDNGGIVLQAKFFSEIVKKLPKDTVEIEV--QNHFQT--VIRSGKAEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + E ++++ +LK ++ +T FA++T E R L G+ I D +L Sbjct: 117 GLDPEEYPHLPQIEEGNGIKVSTDLLKTMIRQTVFAVSTSETRPILTGVNCQI--ADGEL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I +I++P K++ E+ +IL D V++ ++E+++ Sbjct: 175 SCIATDSHRLAMRKAPIETIHDASYNIVIPGKSLNELNKILDDTDEPVEIVITENQVLFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS- 289 + L RL++G +P+ +IP EL +N QA+DR S+++ R VKLS Sbjct: 235 AKHLLFFSRLLEGNYPDTSRLIPSDTKTELTLNTKEFLQAIDRASLLAREGRNNVVKLST 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341 L + ++ + P++GK IE + E + I F+ KY+++ + I E+ Sbjct: 295 LEGGIIEISSNTPEIGKVIEEVQSESVEGEDLKISFSAKYMMDALKAIEGTEI 347 >gi|281356711|ref|ZP_06243202.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC BAA-548] gi|281316838|gb|EFB00861.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC BAA-548] Length = 364 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 95/384 (24%), Positives = 180/384 (46%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + + L II ++ +PV +V++QA +G+L + + EI I+ + A Sbjct: 1 MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G T A L +V G + F +++ + I G S+F L P ++FP+ Sbjct: 61 VEEAGVTTAPARKLASLVGCFV-GTDVVFEVDDK--DHIKIKCGTSHFTLLGLPAADFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E ++ S K ++ +A++ ++ R L G+ E + L VATDG R Sbjct: 118 AVEFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTL--VATDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E A I+P KA E R+L D+ + + L + + ++ + Sbjct: 176 LAMQEKTPEAIEGGDGDAIIPLKAASEARRLLEG-DAVMTIRLGDKQCTFVAGGFELTTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G +PNY+ V+P S + + V + ++ VS++ S + L +++L + Sbjct: 235 LIEGTYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQAS 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + ++G+ + + + + P ++ FN YL + + N + D++ +++ + V I Sbjct: 295 SAEVGEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADA-----DKIRMKINDPLNPVAIE 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 G + YV+MP+R Sbjct: 350 GSE-----------GFLYVIMPIR 362 >gi|259502129|ref|ZP_05745031.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri DSM 16041] gi|259169942|gb|EEW54437.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri DSM 16041] Length = 380 Score = 123 bits (309), Expect = 4e-26, Method: Compositional matrix adjust. Identities = 98/343 (28%), Positives = 170/343 (49%), Gaps = 21/343 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M T+ R+ + L + R I K TIP+ + + + + + S +I I I A Sbjct: 1 MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAN 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +V G+I + A +IV+KL D Q++ N G + I+ G + F + Sbjct: 61 NEDYGLTVKEAGAIVLPARFFSEIVKKLPD-KQVTIEVTN--GFQAEITSGTAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 S FP E E + LA+ VLK ++ +T A++ +E R L G+ F + +D L A Sbjct: 118 DASNFPHLPEIESDNTITLATDVLKEVIRQTVIAVSKQESRPILAGVHFTL--KDGLLTA 175 Query: 174 VATDGHRLA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRLA VA ++ I+ II+P K++ E+ ++S VKV +SE+++ Sbjct: 176 VATDSHRLAQRKVALENVDNSISF--DIIIPGKSLDELSGMMSDDSEDVKVQVSENQVLF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 + RL++G +P +IP ++D + V ++DR S++S R VKL+ Sbjct: 234 IFGNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLT 293 Query: 290 L--SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 + ++ ++ ++ D+PD+G E + E ++I FN Y+ Sbjct: 294 IQPANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYM 336 >gi|256003887|ref|ZP_05428874.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM 2360] gi|281418688|ref|ZP_06249707.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20] gi|255992225|gb|EEU02320.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM 2360] gi|281407772|gb|EFB38031.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20] gi|316939068|gb|ADU73102.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM 1313] Length = 366 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 195/389 (50%), Gaps = 29/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MKI + ++E + + + K T+ + +LL+A D K +G ++E I I Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDNF---KMTGNDLELGIECLID 57 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + GSI +++ + DIVR+L D + KEN V I +S+F L+ P F Sbjct: 58 ADILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSF 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E +++ +++++ +T FA++ E R L G ++ V+ DG Sbjct: 115 PSLPSIEKENMIKVSQKAIRDMIRQTLFAVSMEGTRPILTGSLIECAGNEITF--VSIDG 172 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+A+ + + + S++VP K + EI +IL D + + S+++I I + + Sbjct: 173 FRMALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVV 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 RL++GE+ NY+++IP + +R+ +L +++R S+++S + VK ++ DK+ + Sbjct: 232 SRLLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIII 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSS 356 T N ++G E + V N M++ FN +Y +E + V+DDE+V +SS Sbjct: 292 T-SNTEIGAVREEIRVEVNGSNMEVGFNPRYFIEAL------RVIDDELVDIYFNSSVGP 344 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + DS Y+++P+RI Sbjct: 345 CTIRPLEGDS---------FAYMILPVRI 364 >gi|56418537|ref|YP_145855.1| DNA polymerase III subunit beta [Geobacillus kaustophilus HTA426] gi|56378379|dbj|BAD74287.1| DNA-directed DNA polymerase III beta subunit [Geobacillus kaustophilus HTA426] Length = 378 Score = 123 bits (309), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 24/356 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I+++R + + + + + + TIP+ + L A + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNF 108 VDV GSI + A +IV+KL + E+ TE N I G S F Sbjct: 61 KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQ-------QTVEIETEDNFLTIIRSGHSEF 113 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L E+P + E F++ + +LK ++ +T FA++T E R L G+ + + E Sbjct: 114 RLNGLNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EH 171 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +L ATD HRLA+ +V I ++ ++++P K++ E+ +IL + V + ++ +++ Sbjct: 172 GELVCTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQV 231 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 E L RL+DG +P +IP + + VN QA+DR S+++ R VK Sbjct: 232 LFKAEHLLFFSRLLDGNYPETARLIPTESKTTMIVNTKEFLQAIDRASLLAREGRNNVVK 291 Query: 288 L-SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 L +L L ++ +P++GK E + E ++I F+ KY+++ + + ++ Sbjct: 292 LTTLPGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTDI 347 >gi|55979970|ref|YP_143267.1| DNA polymerase III subunit beta [Thermus thermophilus HB8] gi|55771383|dbj|BAD69824.1| DNA polymerase III, beta subunit [Thermus thermophilus HB8] Length = 375 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 167/351 (47%), Gaps = 22/351 (6%) Query: 1 MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57 M ITV + SD L LL RI+ ++ P+ ++ L A +G L + + E+++ + Sbjct: 1 MNITVPKKLLSDQLSLL---ERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRL 57 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA + V A + +VR L D + E G ++ +S G L P Sbjct: 58 PAEAQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAE 117 Query: 117 EFPS--TKEEEYVYSFEL----ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 +P E E +F L S L + +A + EE R G+ + + + Sbjct: 118 GYPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR 177 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIH 229 AVA+DG+RLA+ ++ + +VP ++V E++R+L D + ++L E + Sbjct: 178 --AVASDGYRLALYDLPLPQGFQA--KAVVPARSVDEMVRVLKGADGAEADLALGEGVLA 233 Query: 230 LNIESLS---MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 L +E S M++RL++GEFP+YQ VIP +++V LR+AV RVS++S + V Sbjct: 234 LALEGGSGVRMALRLMEGEFPDYQRVIPQEFALKVQVEGEALREAVRRVSVLSDRQNHRV 293 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 L L ++ ++ + D GK E + M + +N +YLLE + + Sbjct: 294 DLLLEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPVG 343 >gi|258648469|ref|ZP_05735938.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259] gi|260851226|gb|EEX71095.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259] Length = 374 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 105/389 (26%), Positives = 185/389 (47%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK + S + L R+I K T+P+ + LE+ A+ EI + I Sbjct: 1 MKFVISSSVLSARLQSIGRVIAAKTTMPILNCFVFDIKSKRLELTAADNEITLRTYIDLV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D V+A + D ++++ + F E+ + V +G NF +S E P Sbjct: 61 ESDADIRFAVNAKTIQDAIKEIPEQPLEIFVNESNMEITVEYQNGKYNFMAESADEYPIP 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 EE ++ + S L N + R+ FA A + +R +NGI+F + L + VA+DG Sbjct: 121 PALNEETMH-VNITSGHLLNAINRSLFAAANDPLRPVMNGIYFDLKTSGLTM--VASDGQ 177 Query: 180 RLAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 ++A VDI ++ K S I+P+K + IL ++ ++ ++ R + M+ Sbjct: 178 KMACNTLVDI--KVEKPGSFILPQKPATLLKNILGKEEDTIDMAFDGRRAVFKGTNFEMN 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL +G FPNY VIP N + VN L A+ RV I S+ VKL++ + K+ ++ Sbjct: 236 CRLTEGRFPNYAGVIPQDNPNIISVNREALIAALRRVLIFSNAVSSLVKLNIDNGKMRIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356 + D A E++ Y+ P+ I + +LLE+++N+ +EVVF+L D+S + Sbjct: 296 SQDTDYSMSAEENLLCDYSGTPIKIGYRGPFLLELLNNLPG-----EEVVFKLGDASRAG 350 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + ++ + + +LMPM I Sbjct: 351 LILPTEQEEGE-------DILMLLMPMMI 372 >gi|218245876|ref|YP_002371247.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8801] gi|257058924|ref|YP_003136812.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8802] gi|218166354|gb|ACK65091.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8801] gi|256589090|gb|ACU99976.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8802] Length = 393 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 105/407 (25%), Positives = 193/407 (47%), Gaps = 38/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK +S++ L R + + T PV +VLL A++ G + + A + I + Sbjct: 1 MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLLVADESKGRVSLTAFDLSLGIQTSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDG--AQISFFKENELGTEV-NISHGDSNFYLQSFPE 115 A V G++ + A LL DIV +L +G I+ E+E +++ + F L++ Sbjct: 61 AEVSQGGTVALPAKLLNDIVSRLPEGEITLIADADESEDDSQIITLKSASGQFQLRAMSA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFPS E V + +L S+L ++ + FA +++E + L G+ + L+ A Sbjct: 121 EEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGVHLAGTVDSLEFAA-- 178 Query: 176 TDGHRLAVAEVDIVAQIAKMP-------------SIIVPRKAVGEILRILSSKDSSVKVS 222 TDGHRLAV + + + S+ +P +A+ E+ R+LSS+ S V+ Sbjct: 179 TDGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTVA 238 Query: 223 L--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 L E++I + ++ R +DG +P Y +IP + + V +++RV++++ Sbjct: 239 LYVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLAD 298 Query: 281 VRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + VK +L D+ + ++V+ D+GKA ESM D+ FN KYL++ + + S Sbjct: 299 QKNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALPS 358 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ N V + + Y++MP++I Sbjct: 359 -----QEIQIQLNEGNQPVIL---------TPLGGLKMTYLVMPVQI 391 >gi|332876761|ref|ZP_08444519.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685320|gb|EGJ58159.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 374 Score = 123 bits (308), Expect = 5e-26, Method: Compositional matrix adjust. Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 14/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 M+ V S + L R+I KNT+P+ L + D +L I AS E IT Sbjct: 1 MRFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITNLELV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS---FPE 115 D ++A + D ++++ + +SF + + N +G N QS +PE Sbjct: 61 ESDANARFCINAKTIQDSMKEIAE-QPLSFDINPDNMEITANYQNGRFNIVGQSADEYPE 119 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 P +E + + + + + N + R FA A +E+R +NG++F I ++L V+ Sbjct: 120 MNLP----QEDMNALIIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VS 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGH+L V + + + + I+P+K + +L + V + +E ++ +ES Sbjct: 174 TDGHKL-VRNRNYGIKDHQPAAFILPKKPATILKNLLPKESDDVTLKFNERNAYITMESS 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RLI+G +PNY +VIP +N + V+ L A+ RV I S+ +KL L S++L Sbjct: 233 RLICRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQL 292 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + D A E + Y + PM+I F +L++I++N+ + V+ Sbjct: 293 VVSGQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGGENVI 340 >gi|116617176|ref|YP_817547.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096023|gb|ABJ61174.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 378 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 18/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ RS ++ L R I + TIP+ ++ L ND L + S +I I +P S Sbjct: 1 MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNADISIETTVPQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV++L + A N G I+ G S+F + Sbjct: 61 DTSAQLIITTPGGITLPATFFINIVKRLPNDA----MTLNIEGLRATITSGASSFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI + +K A Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGNSVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V TD HRL+ V + A ++I+P K+ E+ +L +D V++ S ++ + Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + + RL++G +P +IP + ++ + ++L A+DR S++S R V+LSL Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 + + +T + ++G+ E +N E ++I FN Y+ Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYV 333 >gi|261417502|ref|YP_003251184.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC61] gi|319765159|ref|YP_004130660.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC52] gi|261373959|gb|ACX76702.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC61] gi|317110025|gb|ADU92517.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC52] Length = 378 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I+++R + + + + + + TIP+ + L A + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 VDV GSI + A +IV+KL Q +I E E I G S F L Sbjct: 61 KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTVEI----EREDNFLTIIRSGHSEFRLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + E F++ + +LK ++ +T FA++T E R L G+ + + E +L Sbjct: 117 GLNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGEL 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 ATD HRLA+ +V I ++ ++++P K++ E+ +IL + V + ++ +++ Sbjct: 175 VCTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFK 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 E L RL+DG +P +IP + + VN QA+DR S+++ R VKL + Sbjct: 235 AEHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVKLTT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 L L ++ +P++GK E + E ++I F+ KY+++ + + ++ Sbjct: 295 LPGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTDI 347 >gi|139439856|ref|ZP_01773221.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC 25986] gi|133774784|gb|EBA38604.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC 25986] Length = 367 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/389 (25%), Positives = 193/389 (49%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + + +G + + +T+P+ VL++A DG+LE + S I I I A Sbjct: 1 MKFTVSQSSLTQAIGVVMKGVASASTLPILSGVLVKAQDGILEFQTSNYTISIRHRIAAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119 V+ G + + +L +I + L D A ++F EL +V IS S+F L + ++FP Sbjct: 61 VEEEGEMVIPCKMLSNITKTLPD-APVTF----ELSERQVLISCEKSSFRLNTLDANDFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + EL + +L +V R +T++ R L G+ + ++L VATD Sbjct: 116 EFPAYAIESAVELPTDILSEMVGRVWRVTSTDKARPILGGVHMKVENNTVRL--VATDSF 173 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV + + + + + VP A + L I++S+ +++ + +++++ + + Sbjct: 174 RLAVCDTQVETSTLEGSFELNVPADAFNDALNIMASQ-ATIMIGATDTQVVFEAGNTTYV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLC 296 R I+G +PNY+ +IP S ++++ A+ RV++++S AVK + + ++ Sbjct: 233 SRRIEGVYPNYKQLIPDSCVTSVKIDVAAFNAALKRVAVIASAN-PAVKFEIDVENGQMG 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + D A E+++V I FNY Y+ ++ +S ++ E+ L S + + Sbjct: 292 LSSISNDQDLAQETIDVEAEGESGTIAFNYHYIFGCLNALSKEK----EITLELKSYSQA 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K+N Y++MP+RI Sbjct: 348 GIFKSYD---------KINYLYLVMPVRI 367 >gi|229542314|ref|ZP_04431374.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1] gi|229326734|gb|EEN92409.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1] Length = 381 Score = 123 bits (308), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 95/358 (26%), Positives = 178/358 (49%), Gaps = 25/358 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++ R+ ++E + + I + TIP+ + + A++ + S +I I +P Sbjct: 1 MKFSILRNRLIESVQDVSKAITSRTTIPILTGIKITASEEGITFTGSDSDISIESFVPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 A + G I + A + ++V+KL D +I N+ T I G SNF L Sbjct: 61 EDGDEIAVIQQTGGIVLQAKIFGELVKKLPMDIVEIEV--ANQFQT--IIRSGKSNFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E+P + + + +LKNL+ +T FA++T E R L G+ + I +L Sbjct: 117 GLDAEEYPHLPQITEDKVIRIPADILKNLIRQTVFAVSTAETRPILTGVNWSIKGS--RL 174 Query: 172 CAVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA AE+++ A +I++P K++ E+ +IL + V + ++++++ Sbjct: 175 NCIATDSHRLAQRTAEIEMAADAEY--NIVIPGKSLNELNKILPDSNEPVGIVITDNQVL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VK 287 + L RL++G +P+ +IP E+ VN QA+DR S+++ A VK Sbjct: 233 FKAKHLLFFSRLLEGNYPDTSRLIPTDGKTEIVVNTKEFLQAIDRASLLAKEGQNANVVK 292 Query: 288 LSLSSD---KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 LS +D + +T ++P++GK + +N E + I F+ KY+++ + + E+ Sbjct: 293 LSSVTDIPGTIEITSNSPEIGKVTDRVNCKSIEGEELKISFSSKYMMDALRALEGTEI 350 >gi|325282257|ref|YP_004254798.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP] gi|324314066|gb|ADY25181.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP] Length = 360 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 93/367 (25%), Positives = 194/367 (52%), Gaps = 33/367 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV + + E LG R++ +++ P+ + ++A + L + + E+++ PA Sbjct: 1 MKATVTKKVLSEGLGLLERVVPSRSSNPLLTSLKIEATEQGLHLSGTNLEVDLASFAPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQS-----FP 114 V + V AHLL IVR L G ++ E EL G E+++ G S+F +Q+ FP Sbjct: 61 VQNPQAFVVPAHLLSQIVRTL--GGELV---ELELSGDELSVRSGGSDFKIQTGDVAAFP 115 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E FPS + + +S L + +A + E + G+ + + D V Sbjct: 116 ELNFPSQVDAT------VEASDLARALNSVRYAASNEAFQAVFRGV--KLEKRDNGARVV 167 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+DG+R+A+ + + ++ ++ I+P ++V E++R+L +D K+S E ++ + + Sbjct: 168 ASDGYRVALHDFALEGEVREL---IMPARSVDELVRML--RDGEAKLSYGEGQLSVTTDR 222 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293 + M+++L+DGEFP+Y+ VIP ++++ +L+++V RV++++ V+ ++ Sbjct: 223 VRMNLKLLDGEFPDYERVIPTDTKLQVKLPSGSLKESVGRVAVLADKNANNRVEFLVTEG 282 Query: 294 KLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L + + D G+A ++++V + E + + FN KY+ + + I + E++F + Sbjct: 283 QLQLNAEG-DYGRAHDTLSVEQSGTEPAISLAFNAKYVQDALGPIEGEA----EMLF-AE 336 Query: 352 SSNSSVF 358 S+ ++F Sbjct: 337 STKPAIF 343 >gi|46199911|ref|YP_005578.1| DNA polymerase III, beta chain [Thermus thermophilus HB27] gi|46197538|gb|AAS81951.1| DNA polymerase III, beta chain [Thermus thermophilus HB27] Length = 375 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 166/351 (47%), Gaps = 22/351 (6%) Query: 1 MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57 M ITV + SD L LL RI+ ++ P+ ++ L A +G L + + E+++ + Sbjct: 1 MNITVPKKLLSDQLSLL---ERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRL 57 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA + V A + +VR L D + E G ++ +S G L P Sbjct: 58 PAEAQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAE 117 Query: 117 EFPS--TKEEEYVYSFEL----ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 +P E E +F L S L + +A + EE R G+ + + + Sbjct: 118 GYPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR 177 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIH 229 AVA+DG+RLA+ ++ + +VP ++V E++R+L D + ++L E + Sbjct: 178 --AVASDGYRLALYDLPLPQGFQA--KAVVPARSVDEMVRVLKGADGAEADLALGEGVLA 233 Query: 230 LNIESLS---MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 L +E S M++RL++GEFP+YQ VIP ++V LR+AV RVS++S + V Sbjct: 234 LALEGGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRV 293 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 L L ++ ++ + D GK E + M + +N +YLLE + + Sbjct: 294 DLLLEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPVG 343 >gi|282879819|ref|ZP_06288548.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281306329|gb|EFA98360.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 374 Score = 122 bits (307), Expect = 6e-26, Method: Compositional matrix adjust. Identities = 99/348 (28%), Positives = 166/348 (47%), Gaps = 14/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ T+ S + L ++I KN++P+ C + AN+ E+K + + E Sbjct: 1 MRFTLSSSALNNRLQTLSKVINLKNSLPILDCFLFDVANN---ELKITASDSENVMQTSV 57 Query: 60 SVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 S+D C G V + D V++L + L ++ +G NF Q+ + Sbjct: 58 SLDECDGNGKFAVPNRTILDAVKELPEQPLTFDVDTEHLTIKILYQNGVYNFTAQN--AA 115 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P T E + + + VL N + R+ FA A +E+R +NGI+F + E L + VA Sbjct: 116 EYPQTSEIPDGATVVTIGADVLNNNINRSLFATAQDELRPVMNGIYFDLTPEGLAI--VA 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 +DGH+L V + + S I+P+K + +L+ + V + + E Sbjct: 174 SDGHKL-VRNKNFEIKSDTPASFILPKKPATLLRTVLTKGEGDVVIKFDNRNAEIRYEGG 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 S+S RLI+G++PNY +VIP N +L V+ L A+ RV +S Q ++L L + KL Sbjct: 233 SLSCRLIEGKYPNYNSVIPQDNPNQLNVDRKGLLGALRRVLPFASESSQLIRLHLETGKL 292 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ ++ D A E + Y M I F L +I+ N+ SDEV Sbjct: 293 ELSSEDVDFATSAKEQIVCDYTGQTMSIGFKGSSLTDILTNLDSDEVT 340 >gi|222107075|ref|YP_002547866.1| DNA polymerase III beta subunit [Agrobacterium vitis S4] gi|221738254|gb|ACM39150.1| DNA polymerase III beta subunit [Agrobacterium vitis S4] Length = 378 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 4/339 (1%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V RS IL L ++ ++ IP+ +VLL N L + + +E+ + Sbjct: 9 VHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLESAS 68 Query: 65 GS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+ +T+S L DIV+ + A+I F ++L +V + G S F L + +FP+ Sbjct: 69 GNPLTLSGKALLDIVKSFSEVAEIEF-SFDDLRGQVRVKSGRSRFLLATLHADQFPTIAS 127 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 S + L + + R +A+ + R YL+GIF H E + K+ VA DGH LAV Sbjct: 128 LASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNLAV 187 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 A P I+P KA+ I R+ +S +V +S+ I + + ++ +LID Sbjct: 188 VRFPCEAG-TTFPGAIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKLID 246 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNP 302 +P+Y IP N + V+ +L AV RV ++ + +KL S+ L +++ Sbjct: 247 AVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMAAT 306 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 D +A+E + YN + I FN YL + + +I + +V Sbjct: 307 DGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTDV 345 >gi|325854307|ref|ZP_08171506.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A] gi|327313529|ref|YP_004328966.1| DNA polymerase III subunit beta [Prevotella denticola F0289] gi|325484101|gb|EGC87035.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A] gi|326944906|gb|AEA20791.1| DNA polymerase III, beta subunit [Prevotella denticola F0289] Length = 374 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 90/329 (27%), Positives = 165/329 (50%), Gaps = 12/329 (3%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75 R+I KN++P+ L + +DG L I AS E + G + +++ C G V+ H + Sbjct: 19 RVINSKNSLPILDCFLFEVHDGQLTITASDSENIMRGTL--NLENCEGEGDFAVNNHTIL 76 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134 D V++L + E+ V +G NF + E+P + E + + + Sbjct: 77 DAVKELPEQPLALNVNMEEMKIYVTYQNGSYNFPI--LGADEYPKVQPMSETATTVTIGA 134 Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 L + + R+ FA A +E+R +NGI+F + E+ L + VA+DGH+L V + + Sbjct: 135 EKLSDSLTRSLFATAQDELRPVMNGIYFDLKEDGLAI--VASDGHKL-VRNRNFSVKSET 191 Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 + ++P+K + +LS V + + ++ +++ RLI+G++PNY +VIP Sbjct: 192 PAAFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLACRLIEGKYPNYNSVIP 251 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313 N ++ ++ +L A+ RV +S Q ++ +SS L + ++ D A ES+ Sbjct: 252 LDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSSGLLELNAEDIDFSTSAKESIVC 311 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVV 342 Y PM I F +L+I++N+ SD+VV Sbjct: 312 EYGGNPMSIGFKGSSMLDILNNLESDDVV 340 >gi|312869207|ref|ZP_07729379.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3] gi|311095228|gb|EFQ53500.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3] Length = 380 Score = 122 bits (307), Expect = 7e-26, Method: Compositional matrix adjust. Identities = 95/341 (27%), Positives = 169/341 (49%), Gaps = 17/341 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T+ R+ + L + R I K TIP+ + + + + + S +I I I AS Sbjct: 1 MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V G+I + A +IV+KL D Q++ N G + +I+ G + F + Sbjct: 61 DEDYGLTVKEAGAIVLPARFFSEIVKKLPD-KQVTIEVTN--GFQADITSGTAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 S FP E E + L + VLK ++ +T A++ +E R L G+ F + +D L A Sbjct: 118 DASNFPHLPEIESDNTITLPTDVLKEVIRQTVIAVSKQESRPILAGVHFTL--KDGLLTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + + + II+P K++ E+ ++ + VKV +SE+++ Sbjct: 176 VATDSHRLAQRKVALENVDSSINFDIIIPGKSLDELSGMMGDGNEDVKVQVSENQVLFIF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL- 290 + RL++G +P +IP ++D + V ++DR S++S R VKL++ Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLTIQ 295 Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 ++ ++ ++ D+PD+G E + E ++I FN Y+ Sbjct: 296 PANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYM 336 >gi|163790920|ref|ZP_02185343.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7] gi|159873762|gb|EDP67843.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7] Length = 380 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 172/342 (50%), Gaps = 19/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++RS L+ L R I + TIP+ + + AND L + S +I I IP S Sbjct: 1 MKFTIKRSAFLKSLADVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G I + A +IV+KL ++ I + I+ ++F + Sbjct: 61 EEENLLTIEKTGGIVLQARFFSEIVKKLPEETMTIEILDH----FQALITSATASFRING 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +P + +F L ++ K ++ +T A++T E R L G+ I E K Sbjct: 117 LDPNNYPHLPIIDTSETFTLPVNLFKQVIGQTVIAISTHESRPILTGVNIVIENE--KFL 174 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 AVATD HRL+ + I Q K +II+P K++ E+ R L ++++ ++E+++ Sbjct: 175 AVATDSHRLSQRVIPIEMNDEQATKKYNIIIPGKSLIELSRTLDETSDTIEMMITENQVL 234 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E+L RL++G +P+ + +IP ++ E+ N + L +++R S++S + VK+ Sbjct: 235 FKAENLYFYSRLLEGYYPDTKRLIPDNSSTEISFNASALLGSIERASLLSHEGKNNVVKI 294 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 +++ D + ++ ++PD+G E + E P+++ FN Y+ Sbjct: 295 TITPDLIEISGNSPDVGNVKEELEYLSVEGEPIELSFNPDYM 336 >gi|124004099|ref|ZP_01688946.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134] gi|123990678|gb|EAY30158.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134] Length = 376 Score = 122 bits (307), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 6/343 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V + + L +I +P+ + L DG L AS + IT I Sbjct: 1 MKFSVSSALLQRQLSAISGVIMSSPVVPILENFLFVLEDGKLIASASDLQTSITTEIEVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A +L D ++ L + Q F +E V I+ ++ L EFP Sbjct: 61 TQDTGSVAVPAKILLDTLKSLPE--QPVTFSIDEEHKSVEITSNTGHYKLAGENADEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + L+S +L + T FA + +E+R + GI+ E+ VATDGHR Sbjct: 119 IAQADSKLNIALSSDILGKAIGNTIFATSNDELRPAMTGIYIQFKED--HTLFVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + V ++I+P+K++G + L + V S+S + + + M R Sbjct: 177 LIRYKREDVVGGGDPMTMIIPKKSLGLLRSTLPNDPVEVHAEFSDSNAFFSFDDIKMVCR 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMTV 299 LID FP+Y+N IP N L ++ +L ++ R++I ++ ++L ++ + L + Sbjct: 237 LIDERFPDYENAIPTDNPNVLTIDRVSLLNSLKRLAIYANKSTNQIRLKMTAAGTLQIFA 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D +A E++ Y ++I FN K+++E++ NI++ E+ Sbjct: 297 EDLDFSNEANEALACEYQGDDLEIGFNAKFVIEMLSNITAKEI 339 >gi|75812736|ref|YP_320353.1| DNA polymerase III beta subunit family protein [Anabaena variabilis ATCC 29413] gi|75705492|gb|ABA25164.1| DNA polymerase III, beta chain [Anabaena variabilis ATCC 29413] Length = 444 Score = 122 bits (306), Expect = 8e-26, Method: Compositional matrix adjust. Identities = 106/394 (26%), Positives = 191/394 (48%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK+ +E+S + E+L A I K T P+ ++LL AN DG++ + + I A Sbjct: 1 MKLNIEQSKLAEILETAYLAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V+ G + + A LL D + ++ +IS EN+ I+H L EFP Sbjct: 61 NVETSGQVALPAKLLTDTINNVR--GEISLEVENQACI---ITHNSGKCRLIGGKPDEFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L++ L+ +E T + +E + L G+ F I+ K A +T+GH Sbjct: 116 TLPKGENPIEVNLSAKKLQTALEGTLYCTNGDETKLVLTGVNFKIDTN--KWQAASTNGH 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSV-KVSLSESRIHLNIESLSM 237 +LA+ + ++ + VP K++GE+ +ILS S D+SV + LS I ++ + + Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLGELNKILSQSADTSVCNILLSNKTIEFSLPNTKV 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295 RL++GE+P ++IP + + E + A+ RVS ++ + + VK+ L + + Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293 Query: 296 CMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + D+G A++S+ ++E + I N YLLE + +IS+ DE+V R + Sbjct: 294 TLYTEATDIGDAVDSVLMKPTTSHSEN-ISIGLNIDYLLEGLKHIST-----DEIVVRCN 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I +N Y++MP+ I Sbjct: 348 KPTQPVIICP--------MGGLLNQLYLVMPVEI 373 >gi|123967537|ref|YP_001008395.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. AS9601] gi|123197647|gb|ABM69288.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. AS9601] Length = 385 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 93/356 (26%), Positives = 182/356 (51%), Gaps = 17/356 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 M+I ++++ + + + + T P+ ++LL A++G +I +G ++ I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISVTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL + +S + +E + I +F L+ P E+ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPNETPVSL-EVDENSDNILIKSDRGSFNLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIEPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + QI S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGKEEQIENKENLSSNVDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K + N L +++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKIINFNTKKLIDSLERIAVLADQQSSVVK 297 Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + L +D ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S+ V+ Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353 >gi|212694909|ref|ZP_03303037.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855] gi|212662469|gb|EEB23043.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855] Length = 340 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 84/311 (27%), Positives = 155/311 (49%), Gaps = 8/311 (2%) Query: 35 LQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN 93 ++ DG L + AS E ++ ++ + D G VS+ + + ++++ + Q F N Sbjct: 1 MELTDGTLSLTASDSETTLSTSLEVNESDGDGRFAVSSKTILEALKEIPE--QPLTFLVN 58 Query: 94 ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEE 152 E+ + + + + L E+P + + V+ + R+ FA A +E Sbjct: 59 TENLEITVQYQNGKYSLMGQNADEYPQAPALGANAVHVTMGAPVMLAGINRSLFATADDE 118 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 +R +NGI+F I ED+ VA+DGH+L V VA + + I+P+K + +L Sbjct: 119 LRPVMNGIYFDITTEDITF--VASDGHKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLL 175 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 + V++ + +E+ SM RLI+G +PNY +VIP N + ++ L A+ Sbjct: 176 PKEQGDVQIDFDDRNATFTLENYSMICRLIEGRYPNYNSVIPQDNPHKATIDRMTLISAL 235 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLE 331 RVS+ SS +KL LS +++ ++ + D A E++ Y PM I F +L++ Sbjct: 236 RRVSVFSSQASSLIKLRLSENQIQISAQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLID 295 Query: 332 IIDNISSDEVV 342 I++NIS+ E++ Sbjct: 296 ILNNISAQEIL 306 >gi|189499002|ref|YP_001958472.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1] gi|189494443|gb|ACE02991.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1] Length = 374 Score = 122 bits (306), Expect = 9e-26, Method: Compositional matrix adjust. Identities = 100/389 (25%), Positives = 194/389 (49%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E + A + I K P ++ L ++ +L + A+ EI IT Sbjct: 1 MKFTTSIKHFQEAVNKAIQAIPNKVLDPRFENLHLNIDNRILTLFATDGEISITATTDVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 G + + A + D +R + D +++F E + +E VNI+ + + ES+ Sbjct: 61 SSDKGDLGMRARTILDFLRSMYD-TEVNFEIERQQMSEQGIVNIATDKGRYTIPCSFESK 119 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +E+ + F+L + L N++++T FA + + +R + G+ F I E++L L A+ATD Sbjct: 120 -AEKQEKTFDIEFDLTAGDLLNIIQKTTFACSIDGMRPAMMGVLFEI-EQNL-LSAIATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRL +++ I++P + + + +++S + + + + I + ESL + Sbjct: 177 GHRLVRFRKTCEVSLSEKQRIVIPARVLSILQKLVSEGNIRISIDSANRSIRFSTESLVL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 LI ++PNY+ VIP NDK+L + + +V RV S+ I ++ S+S + + Sbjct: 237 DAALIVEQYPNYEAVIPLENDKKLSIERASFYDSVKRVGRFSN--IGDIRFSISPSTMKL 294 Query: 298 TVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 T +N + G+ A E + Y+ P++I FN K++ + +I DD ++ L + ++ Sbjct: 295 TAENINEGESAQEDLACSYDNEPIEIGFNSKFIEAALAHID-----DDSLIVELSTPTTA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ +K+ +N N ++MP+RI Sbjct: 350 VILK-PEKEKENE-----NMMILVMPVRI 372 >gi|312888869|ref|ZP_07748431.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM 18603] gi|311298610|gb|EFQ75717.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM 18603] Length = 374 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 168/342 (49%), Gaps = 6/342 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L + +P+ + L + D L I A+ + +T ++ Sbjct: 1 MRFIVSTSTLLKQLQAVSGALSSSTVLPILENFLFEIKDSNLTISATDLQTSMTTSLSVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + + +L D ++ L + Q F ++ + I+ GD + L +FP Sbjct: 61 AKENGRVAIPSRILLDTLKSLPE--QPIAFSVDDKTFAIEINAGDGKYKLSGENGDDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L +SVL + +T FA++ +E+R + G+F ++ L VATD H+ Sbjct: 119 IPVVENASSVNLPASVLAEAINKTIFAVSNDELRPAMTGVFCQLSTTSLTF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V A+ A S I+P+KA+ + L S ++SV V + + ++++ R Sbjct: 177 L-VRYRRKDAKAAGTTSFILPKKALNLLKSSLPSDETSVAVEYNNTSAFFKFGNINLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ ++ RV+I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPQTNPNKLLIDRQAFLGSLSRVAIYANKTTHQVRLKINGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D +A E + Y M+I FN ++L+E++ N+ S EV Sbjct: 296 DIDFANEAHERLTCQYEGDDMEIGFNARFLIEMLKNLGSAEV 337 >gi|297528378|ref|YP_003669653.1| DNA polymerase III subunit beta [Geobacillus sp. C56-T3] gi|297251630|gb|ADI25076.1| DNA polymerase III, beta subunit [Geobacillus sp. C56-T3] Length = 378 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 24/356 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I+++R + + + + + + TIP+ + L A + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATALGVTLTGSDSDISIESFIPLE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNF 108 VDV GSI + A +IV+KL + E+ TE N I G S F Sbjct: 61 KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQ-------QTVEIETEDNFLTIIRSGHSEF 113 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L E+P + E F++ + +LK ++ +T FA++T E R L G+ + + E Sbjct: 114 RLNGLNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EH 171 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +L ATD HRLA+ +V I ++ ++++P K++ E+ +IL + V + ++ +++ Sbjct: 172 GELVCTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQV 231 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 E L RL+DG +P +IP + + VN QA+DR S+++ R VK Sbjct: 232 LFKAEHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVK 291 Query: 288 L-SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 L +L L ++ +P++GK E + E ++I F+ KY+++ + + ++ Sbjct: 292 LTTLPGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTDI 347 >gi|126658042|ref|ZP_01729194.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] gi|126620680|gb|EAZ91397.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] Length = 393 Score = 122 bits (306), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/411 (24%), Positives = 194/411 (47%), Gaps = 46/411 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +SD+ L R + + T P+ +VL+ A+ + + ++ + S Sbjct: 1 MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLMVADSQKNRVSLTAFDLSLGIETSFS 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH------GDSNFYLQS 112 DV G IT+ A LL DIV +L +G +I+ E TE N SH F +++ Sbjct: 61 ADVSEDGQITLPAKLLNDIVSRLPEG-EITLMSEE---TENNDSHIVALKCASGQFQVRA 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E S +L +L ++ FA +++E + L G+ + L+ Sbjct: 117 MDAEEFPPLPTVEEGESLQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEFA 176 Query: 173 AVATDGHRLAVAEVDIVAQI---------AKMP-----SIIVPRKAVGEILRILSSKDSS 218 A TDGHRL+V E + Q ++MP ++ +P +A+ E+ R++ +++ S Sbjct: 177 A--TDGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRNES 234 Query: 219 VKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 ++L E+++ + ++VR +DG +PNYQ +IP + + + L +++RV+ Sbjct: 235 DAIALQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVA 294 Query: 277 IMSSVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 +++ + VK + + + ++ ++V+ D+G A ESM +I FN KYL++ + Sbjct: 295 VLADQKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLK 354 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + E+ +L+ N V N + Y++MP++I Sbjct: 355 ALPT-----KEIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391 >gi|78043484|ref|YP_361491.1| DNA polymerase III subunit beta [Carboxydothermus hydrogenoformans Z-2901] gi|77995599|gb|ABB14498.1| DNA polymerase III, beta subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 371 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 173/346 (50%), Gaps = 11/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK T S + E + A + + K+ PV +L +AN+ + + A+ ++ + + P Sbjct: 1 MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + GS+ +++ L DI++KL + + + NE + I +G S + ++ EF Sbjct: 61 AKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNE--GKCVIKYGASEVSVATYRPEEF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P +E SF ++ +++ FA T+E R G+ F I ++L+L VA+D Sbjct: 119 PKNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRL--VASDT 176 Query: 179 HRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRLA + I + K ++I+P + + E +RI + D + + +SE ++ + + + Sbjct: 177 HRLAFRKTFIKREDTGKNINVIIPSRTLHEAVRIFGTVDE-LLIKISEGQVEFSGNGIKL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKL 295 + RLI+G+FPNYQ VIP + + +N +++R +++ + K L + + Sbjct: 236 TSRLIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENM 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +T + + G E + + + FN +YL++++ + ++E+ Sbjct: 296 IITSQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLETEEI 340 >gi|291513941|emb|CBK63151.1| DNA polymerase III, beta subunit [Alistipes shahii WAL 8301] Length = 374 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 190/390 (48%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +V S +L LL ++I KNT+P+ + LL+ N L++ S E + G I Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLLELNGNTLQVTTSDLETTLVGQIEVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPESEF 118 SV+ G+I A L+ D L++ ++ E N+ E+ I+ + + + Sbjct: 61 SVESEGTIAAPAKLMLD---SLKEFPELPLTIEVNDKNWEIKINWKSGSLSIPGASAVSY 117 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + L L N + +T FA A +E+R +NGI+ ++ + L V TD Sbjct: 118 PAVPQLNAEKKELRLDVDTLVNGINKTIFATADDELRPVMNGIYINLAPDALTF--VGTD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 H+L E + ++ S I+P+K + +L +D +++++ ++S ++ Sbjct: 176 AHKLVKYEAETENEVTA--SFILPKKPANLLKSVLLKEDDAIEMAFDSKNALFKLKSHTL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+G +PNY VIP +N ++ V+ L + RV++ S+ +++ ++ +++ + Sbjct: 234 VCRLIEGNYPNYNAVIPSNNPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRITL 293 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 T + D A E+++ Y+ P+ I F +L+EI+ N+ + V VV DS+ + Sbjct: 294 TAQDIDFSVSANETISCSYDGQPISIGFKSTFLVEILSNMDTPTV----VVELADSTRAG 349 Query: 357 VFIRGKDKDSKNNKDNKVNA-FYVLMPMRI 385 VF D D + +A +LMPM I Sbjct: 350 VFKPVYD-------DKQPSATLMLLMPMMI 372 >gi|126695338|ref|YP_001090224.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9301] gi|126542381|gb|ABO16623.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9301] Length = 385 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 181/356 (50%), Gaps = 17/356 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 M+I ++++ + + + + T P+ ++LL A+ G +I +G ++ I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISVTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ G+IT+ + LL +IV KL + +S E E + I +F L+ P E+ Sbjct: 61 GTIKNSGAITIPSKLLSEIVNKLPNETPVSLEVE-ENSDNILIKSDRGSFNLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVA----EVDI-----VAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA E DI ++ S+ +P +++ EI +++S S + S+K+ + + Sbjct: 178 HRLAVALIGNEEDIENKENLSSNVDNLSVTIPNRSLREIEKLVSLRSSEKSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K L N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTKKLIDALERIAVLADQQSSVVK 297 Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + L +D ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S+ V+ Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353 >gi|288928330|ref|ZP_06422177.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331164|gb|EFC69748.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 375 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 92/334 (27%), Positives = 167/334 (50%), Gaps = 12/334 (3%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAH 72 L + + + K +IP+ + L + DG+L + S E + A+ D G TV + Sbjct: 14 LQNLAKTLSAKPSIPILNNFLFEVVDGVLTLTTSDSETTMKAALKLDESDSNGRFTVPSR 73 Query: 73 LLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYS 129 + D R+L D Q F N + ++ +G NF Q+ E+P KE S Sbjct: 74 TILDATRELPD--QPLHFDINLETMAVQITYQNGVYNFTAQT--AEEYPRNKELAADAAS 129 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 ++ S+VL N + R+ FA +E+R +NGI+F + E+ L + VATDGH+L + + + Sbjct: 130 IQMESAVLLNSIVRSIFATGQDELRPIMNGIYFDLKEDGLAI--VATDGHKLVKNKNNAI 187 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 K S ++ +K + IL+ + V++ + ++ + +S RL++G +PNY Sbjct: 188 RSDVKR-SFVLAKKPASLLRNILTKDATMVEIKFDDRNAEVHFPNGMLSCRLVEGNYPNY 246 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAI 308 ++VIP N ++ ++ L + RV +S Q ++L + + ++ ++ D A Sbjct: 247 ESVIPKDNPNQITLDRKGLVSVLRRVLPFASESSQLIRLHIEQGLIELSSEDIDFATSAK 306 Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ESM Y PM+I F L ++++N+ SD+VV Sbjct: 307 ESMVCDYVGIPMNIGFKGSVLGDVLNNLDSDDVV 340 >gi|281424379|ref|ZP_06255292.1| DNA polymerase III, beta subunit [Prevotella oris F0302] gi|281401648|gb|EFB32479.1| DNA polymerase III, beta subunit [Prevotella oris F0302] Length = 373 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 109/388 (28%), Positives = 189/388 (48%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ S + L ++I KN++P+ L + ++ L+I AS E +T + S Sbjct: 1 MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE-LGTEVNISHGDSNFYLQSFPESEF 118 D GS V + D V++L + +SF + E L ++ +G NF Q+ E+ Sbjct: 61 ECDGEGSFAVPNRTILDAVKELPE-QPLSFDVDIEALTIKILYQNGMYNFTAQN--ADEY 117 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P T+ + + S+ L + + R+ FA AT+E+R +NGI+F + + L VATD Sbjct: 118 PHTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GH+L V D + S I+P+K + +LS D+ V + + + + Sbjct: 176 GHKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ + + KL + Sbjct: 235 TCRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEV 293 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNS 355 + ++ D A E + YN M I F L +I++N+ S DEV+F+L D S + Sbjct: 294 SSEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDS-----DEVIFQLADPSRA 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V + + ++ N ++MPM Sbjct: 349 GVIVPAQQPEN-------ANILMLIMPM 369 >gi|152973856|ref|YP_001373373.1| DNA polymerase III subunit beta [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022608|gb|ABS20378.1| DNA polymerase III, beta subunit [Bacillus cytotoxicus NVH 391-98] Length = 381 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 89/356 (25%), Positives = 179/356 (50%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDSDISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 EDGKEIVEVSQSGSIVLQAKYFSEIVKKLPKDIVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174 Query: 172 CAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +ATD HRLA+ I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 175 TCIATDSHRLALRTAKIEGHNISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VK Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294 Query: 288 LSLSSDKLC-MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 LS K+ ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 295 LSTFEQKMLEISSNSPEIGKVVEEVQCEKIDGEELKISFSAKYMMDALKALDSTEI 350 >gi|238926598|ref|ZP_04658358.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531] gi|238885544|gb|EEQ49182.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531] Length = 380 Score = 122 bits (305), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 102/399 (25%), Positives = 192/399 (48%), Gaps = 36/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +++++ L + + K P+ V + A +G LE++++ E+ IPA Sbjct: 1 MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + L + RKL ++S E+ G I G + F L++ ++FP Sbjct: 61 IRSTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGL-AEICSGTARFTLRTMEVTDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIR---YYLNGIFFHINEEDLKLCAVATD 177 + F + +VL LV+++ FA EE R G ++ K+ AT+ Sbjct: 119 LHRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVDGH--KVTFAATN 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 HRLAV + + ++ II+P + + E+ R ++S S V +S + ++I ++ +++ Sbjct: 177 VHRLAVKSESLETEAGQI-CIIIPARFLEEVTRTMTSDVPSDVNISCTYNQISISFDNIY 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCT----NLRQAVDRVSIMSSV-RIQAVKLSLS 291 M+ RLI+G FP+Y+ VIP D +R T AV+R S+++ + VKLS + Sbjct: 236 MTSRLIEGTFPDYRRVIP--QDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFA 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + ++ ++P++G+A E++ + I FN YL++ + ++ S D + L Sbjct: 294 DGTMRISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDS-----DTCILSLQ 348 Query: 352 SSN------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 SN S + IR ++ N YV+ P+R Sbjct: 349 GSNEQGVNLSPITIR---------EEADPNYIYVVTPVR 378 >gi|224367125|ref|YP_002601288.1| DnaN [Desulfobacterium autotrophicum HRM2] gi|223689841|gb|ACN13124.1| DnaN [Desulfobacterium autotrophicum HRM2] Length = 371 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 90/371 (24%), Positives = 190/371 (51%), Gaps = 17/371 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + +R + E+L I +K + ++ VL++ + + I A+ E G A Sbjct: 1 MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119 ++ G I ++A LY+I+R+ D AQ+ NE+ V I + +++ S FP Sbjct: 61 IESDGIIAINAKKLYEIIREYPD-AQVPL---NEIENRWVEIGKDNIQYHIVSSDYENFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVE-RTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVAT 176 T E + E+ S+ K +VE A + +E R Y+ G F +E +L V+T Sbjct: 117 ETPLIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVST 176 Query: 177 DGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 D RL + ++ +P ++I+P+K + E+ R L ++ SV + + + + + ++ Sbjct: 177 DSRRLNSFDASYEGELV-LPDENVIIPKKGLSELGRFLD-REGSVNIGIKDDHLIVQKQN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ ++L++G++P+Y+ V+ ++ ++ + L + R+SI+SS ++V + + ++ Sbjct: 235 ETLMIKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENE 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T+ NP++G++ E + + Y + FN +Y ++ +++I+S D V+ + + Sbjct: 295 LVVTITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINS-----DTVILNVKGAK 349 Query: 355 SSVFIRGKDKD 365 I+G D D Sbjct: 350 HPCIIKGLDDD 360 >gi|212551001|ref|YP_002309318.1| DNA polymerase III beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549239|dbj|BAG83907.1| DNA polymerase III beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 374 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 97/345 (28%), Positives = 172/345 (49%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK + + +L L ++I KN IP+ L Q +D L I + E IT Sbjct: 1 MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G + + L D +R+L D Q F NE EV I + + + + E+P Sbjct: 61 NAEGEGKFAIPSKNLLDALRELPD--QPITFVINETNNEVLIYYENGKYSFIAQNGDEYP 118 Query: 120 STKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++K + V+ + + L N + T FA A +E+R +N IFF ++ E ++ VA+DG Sbjct: 119 TSKPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPE--RVIFVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + ++ K S I+PRK + IL ++ ++ + IH+ + ++ Sbjct: 177 HKLVRLKNSRLSG-NKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY VIP + + V+ N A+ RV++ S+ +KL + ++K+ +T Sbjct: 236 SRLIEGHYPNYNAVIPNESPYRIIVDRLNFLNALKRVTLFSNPGNSLIKLQILANKIFIT 295 Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E + + Y + I F YL+E+++NISS+E++ Sbjct: 296 AQDIDYSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSNEII 340 >gi|126651996|ref|ZP_01724188.1| DNA polymerase III subunit beta [Bacillus sp. B14905] gi|126591265|gb|EAZ85374.1| DNA polymerase III subunit beta [Bacillus sp. B14905] Length = 378 Score = 121 bits (304), Expect = 1e-25, Method: Compositional matrix adjust. Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 26/358 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +LE L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI V A + +IVRKL + +I G + +I G S F+L Sbjct: 61 EDGQQIIHIAETGSIVVQARMFNEIVRKLPTNDVEIHVTP----GFQTHIRSGKSEFHLI 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +E+P E F + + +LK ++ T A+AT E R L G+ + I E L + Sbjct: 117 GSDAAEYPLLPELTEDQKFTIPADLLKTIIRETVLAVATSESRPVLTGVNWQIKNETL-I 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 C VATD HRLA +V Q+ +P S+++P K++ E+ ++L + V++ ++ + Sbjct: 176 C-VATDSHRLARRKV----QLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQ 230 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + + RL++G +P+ +IP + +N +L QA+DR S+++ R V Sbjct: 231 VLFKTGDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVV 290 Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 + L + ++ ++P++GK E + V E + I F+ KY++E + I +VV Sbjct: 291 RFEILGHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQDVV 348 >gi|134096622|ref|YP_001102283.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005724|ref|ZP_06563697.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133909245|emb|CAL99357.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 374 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 MKI VER + + + R + + +PV VLL A+ G L I E+ I A Sbjct: 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDASSGEALTISGFDYEVSAQVTIDA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116 S+D G VS LL DI + L + + E+ G+ V I+ G S F L + P Sbjct: 61 SIDSTGRTLVSGRLLADITKALPN-------RPVEITVDGSRVTITCGSSRFSLPTMPVE 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNL----VERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + A SV +L V + A ++ L G+ IN + +L Sbjct: 114 DYP-----ELPAMPDHAGSVPGDLFSEAVSQVAVAAGKDDTLPMLTGVRMEINAD--RLT 166 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIH 229 VATD RLA+ E + S++VP K + + + L + + V++SL+ + + Sbjct: 167 MVATDRFRLAMREFTWEPGTTIEDTSVLVPAKTLSDSAKTLGTGGNKVEISLASGDGLLG 226 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 L+ S + RL+D EFP Y+ ++P + V+ L +A+ RVS+++ R V+L Sbjct: 227 LSGNSRRSTTRLLDAEFPKYRQLLPSESAVTAVVDVAPLVEAIKRVSLVAE-RGTQVRLE 285 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S L +T D G A E + V + I FN YLL+ + + SD +++F Sbjct: 286 FSDAGLRLTAGGDDEGSAEEELPVELVGEALTIAFNPAYLLDGLGALKSDRA---QMLF- 341 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +SN ++ +D + + Y+LMP+R+ Sbjct: 342 -TTSNRPAVLKPVGEDGEVAE----GYLYLLMPVRL 372 >gi|291288759|ref|YP_003505575.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885919|gb|ADD69619.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM 12809] Length = 368 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 7/340 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + +I + A KN V ++L+ A + ++A+ ++ +G IP S Sbjct: 1 MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIPVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVS L DI++++ DG+ I F + G+++NI G S+F L + FP+ Sbjct: 61 VEETGTATVSGKKLLDIIKEIPDGSVIDFSFD---GSKINIDSGKSSFKLSTISHEIFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E Y ++ SS+L NL+++T F ++T+ + G + + L++ A D R Sbjct: 118 MAEITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGDKLEISAA--DFQR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A + V + + I +PRK V E+L+IL +D V++ +I I + + + Sbjct: 176 IATSSVKFDEEYSNEFMINIPRKTVMELLKIL-DEDEYVEIETDRKQIIFTIGQVKIFSK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+ + + + ++N + RVS ++S V LS + Sbjct: 235 LIEKYIKSITKLFANDLPLQAKLNRAEFLDVIKRVSAITSEVTHGVVLSFKPGTFTVYSL 294 Query: 301 NPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSD 339 + G ES++ + YN P+DI FN K++ E+I NI +D Sbjct: 295 ETEYGTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTD 334 >gi|317050201|ref|YP_004111317.1| DNA polymerase III subunit beta [Desulfurispirillum indicum S5] gi|316945285|gb|ADU64761.1| DNA polymerase III, beta subunit [Desulfurispirillum indicum S5] Length = 368 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 96/386 (24%), Positives = 186/386 (48%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ +E+ D+ + L A I KN T + ++ ++A L+ I ++ I +T I A Sbjct: 1 MRFEIEKKDLEKTLFKAHGICNSKNITNNILTNIQIKAESDLIRINSTDRNISLTSTISA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS+ V+ Y+ +++L + I +N L I+ + F L + + FP Sbjct: 61 NIQETGSVLVNGKKFYEAIKELPNNIVIIERVDNTL----TIACQKTQFKLFTSDPTLFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L++++ +T F + ++ +NG + + K+ VATDGH Sbjct: 117 ELDLQLGESPVVIPALKLRDILIKTFFCSTETQTKFGVNGTLLKL--QGNKITTVATDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL ++ + Q + +++PR ++ EI+++L+ D +KV + E+ I + ++ Sbjct: 175 RLGLSAISTDQQYSDN-EVVIPRNSLNEIVKVLTDVDEDIKVHIDENAIVFATQQDTIKT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+ +FP Y VIP L+++ +++ + R+SI + ++ VK S+ L T+ Sbjct: 234 NLLKKKFPPYGKVIPDECPVSLQISTKKIKETLKRLSIFVNENVKIVKFSVEDKILVATI 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + G A E + + Y +I +N + EII++I S + L+ S S I Sbjct: 294 QSQEHGNAREVIEIEYEGNNFEIGYNVRLFNEIINHIES-----ETFTLALNESLSVSVI 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D N KD + YVLMP R+ Sbjct: 349 RPGD----NKKDEQ--TLYVLMPNRL 368 >gi|118468117|ref|YP_884424.1| DNA polymerase III subunit beta [Mycobacterium smegmatis str. MC2 155] gi|1706495|sp|P52851|DPO3B_MYCSM RecName: Full=DNA polymerase III subunit beta gi|1321894|emb|CAA63249.1| dnaN [Mycobacterium smegmatis] gi|118169404|gb|ABK70300.1| DNA polymerase III, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 397 Score = 121 bits (304), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 103/407 (25%), Positives = 185/407 (45%), Gaps = 44/407 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R D + + R + + TIPV VLL D L I SG + E++ + S Sbjct: 11 LKFRVVREDFADAVAWVARSLPTRPTIPVLAGVLLTGTDEGLTI--SGFDYEVSAEVKVS 68 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115 ++ GS+ VS LL DI + L K E+ GT V+++ G + F L + Sbjct: 69 AEIASAGSVLVSGRLLSDITKALP-------AKPVEVSVEGTRVSLTCGSARFSLPTLAV 121 Query: 116 SEF---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++ P+ EE V +AS + + + A ++ L GI I+ E + L Sbjct: 122 EDYPALPALPEETGV----IASDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGESVVLA 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS------- 224 ATD RLAV E+ V + +++VP K + E + + + V ++L Sbjct: 178 --ATDRFRLAVRELTWVTTAGDVEAAVLVPAKTLAEAAKA-GTDGNQVHLALGSGASVGK 234 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 + + + E + RL+D EFP ++ ++P + + L +A+ RV++++ R Sbjct: 235 DGLLGIRSEGKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVAD-RGA 293 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 +++ S D L ++ D+G+A E + V + P+ I FN YL + + ++ S + Sbjct: 294 QIRMEFSDDTLKLSAGADDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLGSLHS-----E 348 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 V F + + +R +D N + K + Y+LMP+R+ Sbjct: 349 RVTFGFTTPSRPAVLRPAGEDDGANGGSGPFPAAKTDYVYLLMPVRL 395 >gi|78211559|ref|YP_380338.1| DNA polymerase III subunit beta [Synechococcus sp. CC9605] gi|78196018|gb|ABB33783.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9605] Length = 385 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 100/401 (24%), Positives = 193/401 (48%), Gaps = 34/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKVVCSQSELNGALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV++ G+IT+ A LL +IV +L + ++ ++ G +V ++ ++ ++ ++ Sbjct: 61 ASVEISGAITLPARLLGEIVSRLSSDSPVTLAVDDS-GEQVQLTSLSGSYQMRGMSADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L L ++ T FA + +E + L G+ N+ L+ A ATDG Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227 HRLAV V+ Q + ++ +P +++ E+ R+++S S VSL R Sbjct: 178 HRLAVLNVEDALQDEAVTDAVDDDGFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + L + + S R ++G +PNY +IP + ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYGQLIPDGFARTFGMDRRALIAALERIAVLADQHNNVVK 296 Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 S + + ++ D D+G ES+ M I FN +YLL+ + + S D Sbjct: 297 FSSQPEDGVVQISADAQDVGSGSESLPANLEGDAMQIAFNVRYLLDGLKAMGS-----DR 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 +V ++ + +R D+ AF Y++MP++I Sbjct: 352 IVLHCNAPTTPAVLR---------SDDASEAFTYLVMPVQI 383 >gi|254526327|ref|ZP_05138379.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT 9202] gi|221537751|gb|EEE40204.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT 9202] Length = 385 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 180/356 (50%), Gaps = 17/356 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 M+I ++++ + + + + T P+ ++LL A++G +I +G ++ I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL +S + +E + I +F L+ P E+ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPTETPVSL-EVDEDSDNILIKSDRGSFTLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + I S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGNEEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K L N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297 Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + L +D ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S+ V+ Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353 >gi|299143461|ref|ZP_07036541.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517946|gb|EFI41685.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 364 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 105/388 (27%), Positives = 195/388 (50%), Gaps = 29/388 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +ER ++ + + I + T+ + +L+ A D LL + AS EI I +PA Sbjct: 1 MKIRIERKELSRHISIVQKAISSRTTMQILEGILIIAKDNLLTLIASDTEISIKTTLPAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I V++ L DI+RKLQ I F+ N+ T +NI S F +Q EFP Sbjct: 61 ISDEGKIVVNSRLFGDIIRKLQ--GDIIDFEINQ--TNMNIKCLKSEFNIQCQVPDEFPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +L SS K + +T FA++ +E R G+ I + K+ VA DG R Sbjct: 117 LPRVDENLTIKLKSSDFKEAIRKTSFAVSFDETRVAFTGVLMDIKNK--KINFVALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ +D + + S I+P +++ E+++I+ +++ V +++ + + +++ Sbjct: 175 MALKSLD--TECEENISAIIPARSLNELVKIIENEE-YVNLTIGRNSLKFDLDKTIFYTT 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCT--NLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297 L+ GEF Y+ +I ND+ + V +L+ +++R ++++ + VKL + ++ + Sbjct: 232 LLSGEFFKYEGLI--KNDQSIIVEVLKHDLQSSLERATLLAKEDKANLVKLDMKDSEIEI 289 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T N ++G ES++ + + I FN KYLLE + I S++V + DS N + Sbjct: 290 T-SNSEIGNVEESVDAKISGENLKIAFNSKYLLEGVRIIESEKV----TLNFTDSINPCI 344 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 DKD Y+++P+R+ Sbjct: 345 IREEDDKD----------YIYLVLPVRL 362 >gi|148283999|ref|YP_001248089.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str. Boryong] gi|146739438|emb|CAM79068.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Boryong] gi|267847155|gb|ACY80718.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Boryong] gi|267847157|gb|ACY80719.1| chromosomal replication initiation protein [Orientia tsutsugamushi] gi|267847169|gb|ACY80725.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 121 bits (303), Expect = 2e-25, Method: Compositional matrix adjust. Identities = 107/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58 I ++ + +L I+E+KN + +V L ND + LEI A+ +I I +P Sbjct: 20 IKLDTKNFSRVLNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79 Query: 59 ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 + SIT+ L +IV+K+ D I ++N++ V I G+ F L + P Sbjct: 80 IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKGGEYLEFNLATLPI 136 Query: 116 SEFPSTKEEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173 + FP +E V + + + L ++E T FA++TEE RY LNGI+ H +D K L A Sbjct: 137 NLFPVIEELTDVDFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225 VATDGHRLA A+ +I + + +I+PRK + E+ +I S +V + + Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++I + +++++ +LIDG FP Y+ IP +N K++ +N +L +++DRVS ++ + + Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIDRVSTIAVEKSKI 314 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324 V L L + + KA E + Y + + I F Sbjct: 315 VILDLDHHAITIRAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAF 374 Query: 325 NYKYLLEII 333 N KYLL+++ Sbjct: 375 NAKYLLDVL 383 >gi|78778386|ref|YP_396498.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9312] gi|78711885|gb|ABB49062.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT 9312] Length = 385 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 182/356 (51%), Gaps = 17/356 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 M+I ++++ + + + + T P+ ++LL A+ G +I +G ++ I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISLTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL + + +S + L + I +F L+ P ++ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPNESPVSLEVDENLD-NILIKSDRGSFNLKGIPSDDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F + L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKATIFATSNDDSKQLLTGVNFTFKQNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIA---KMPSI------IVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + I K PSI +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGNEEHIENKDKSPSIEDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP + K N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGAYPNYSQLIPDTFSKIFNFNTKKLIDALERIAVLADQQSSVVK 297 Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + L ++D ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S V+ Sbjct: 298 IKLDNTDLASISADAQDIGNANESIPVSYSGEDFDIAFNVRYLLEGLKVIASKNVL 353 >gi|225012856|ref|ZP_03703289.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A] gi|225002978|gb|EEG40955.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A] Length = 372 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 86/344 (25%), Positives = 168/344 (48%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + N L + AS E + I Sbjct: 1 MKFIVSSAALLKELQMLGGVINSTNTLPILDNFLFEINGNSLTLTASDLETTFSTRIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + + + A LL D ++ + ++F K + E++ ++G Y ++ E +EFP Sbjct: 61 SESNSMVALPARLLLDTLKTFPE-QPLTFIKTEKNTVEISANNGK---YAVAYVEGNEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + S +L + T FA +++R ++G+FF + E L VATD H Sbjct: 117 KAAQVNDAKTTLIQSDILYTAINSTLFASGNDDLRPVMSGVFFQFSTESLTF--VATDAH 174 Query: 180 RLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +L D+ A I+P+K + + IL S + + +++ +++ Sbjct: 175 KLVKYTRSDVTA--TDTSEFIMPKKPLQLLKGILQGSISEISIEYNDTNAQFRFGDSALT 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY+ VIP N +++V+ + +V RVSI S+ ++L ++ L ++ Sbjct: 233 CRLIDGKYPNYEAVIPKENPNQMQVSRVSFLNSVRRVSIFSNKTTHQIRLKIAGAALQIS 292 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D A E ++ Y + I FN ++L+E+++N+ D++ Sbjct: 293 AEDFDYSNSAEERLDCDYQGDDIQIGFNSRFLIEMLNNMECDQI 336 >gi|297621406|ref|YP_003709543.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044] gi|297376707|gb|ADI38537.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044] Length = 373 Score = 120 bits (302), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 17/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L+ ++ T+PV ++L++A +G L + A+ + + A Sbjct: 1 MKFVISTQEFNYLISKCQHVVPPNPTMPVLSNILIEAKNGELILTATDLTVGVRCFTEAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T+ L ++R+L EN + I S F L +P Sbjct: 61 VLEEGSTTLPVKKLASLIRELTSMNVEVTTSENHV---TEIISDTSKFKLNGMAGGNYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +L LK + RT FA++ ++ RY L G+F HI E+ + C V TDG R Sbjct: 118 LPSFADATPIKLTQQQLKEMFFRTSFAVSKDDTRYALTGVFLHI--ENGRACFVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +D+ + IVP KAV EIL+ L ++ + L +I + E+ + Sbjct: 176 LARTRLDLEIDPSFSGGYIVPIKAVDEILKNLK-EEGDATLYLLNDKIAVETENSLHVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ G++P+ VIP + + L ++ L + +VS+ ++ +V+ S + ++ ++ + Sbjct: 235 LLSGDYPDVNRVIPDRSGQSLTLHREELLTLLRQVSLFTAEGYHSVRFSFGNGEVKLSAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G+ SM V Y+ +DI F+ + ++I+ + + V + DS N V Sbjct: 295 TKDVGEGNVSMPVNYHADQIDIAFDPTFFMDILKHTRGERV----TLGVTDSFNPGVIT- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D++ ++ + +VLMPMR+ Sbjct: 350 ----DTEEGTED--SPLFVLMPMRL 368 >gi|227893837|ref|ZP_04011642.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047] gi|227864326|gb|EEJ71747.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047] Length = 378 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 21/356 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 3 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 62 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T+ I +S F + + Sbjct: 63 EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQ--IVSENSEFTINGLDAN 119 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + +K AVAT Sbjct: 120 NYPRLPEIPDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 178 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKVCPGDNQALFIIGNLS 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + L A++R S+++ R V L+L +K Sbjct: 238 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVEKQ 297 Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344 + GK+ E NV + N ++I FN Y+ + + +D V+ D Sbjct: 298 TAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVIMD 349 >gi|119509171|ref|ZP_01628322.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414] gi|119466337|gb|EAW47223.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414] Length = 387 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 182/362 (50%), Gaps = 28/362 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ ++ + ++ I + Sbjct: 1 MKLVCTQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAKTNQVSLTAFDLSLGIRTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--------DSNFYL 110 A V G+I + A LL DI +L +G +++ E+ L +E G ++ + Sbjct: 61 AEVLEGGAIALPAKLLVDITSRLPEG-EVTLDDESALESETATGEGLIVTLTPKSGHYQV 119 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 ++ EFP E +L ++ L + + FA + +E + L G+ + ++ L+ Sbjct: 120 RAMSAEEFPELPIIENAEPIQLTTAALIEGLRGSLFATSGDETKQVLTGVHLTVRQDTLE 179 Query: 171 LCAVATDGHRLAVAE------VDIVAQIAKMPSIIVPRKAVGEILRIL---SSKDSSVKV 221 A TDGHRLAV E +D Q+ + VP +A+ E+ R+L ++ D ++ + Sbjct: 180 FAA--TDGHRLAVLETTNERPLDNSEQL----EVTVPARALRELQRMLGHNAASDQAIAL 233 Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 L + ++ ++ ++ R +DG++P Y+ +IP +++L + L ++R+++++ Sbjct: 234 YLDQGQVVFAWQNQRLTSRTLDGQYPAYRQLIPRQFERQLTIERKQLISTLERIAVLADQ 293 Query: 282 RIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + VK+S+ +S ++ ++ + D+G ES+ + ++I FN KYL+E + + S Sbjct: 294 KNNIVKVSINSASQEITLSCEAQDVGSGRESIPAQISGEDIEIAFNIKYLMEGLKELPSS 353 Query: 340 EV 341 E+ Sbjct: 354 EI 355 >gi|51244500|ref|YP_064384.1| DNA polymerase III, beta chain [Desulfotalea psychrophila LSv54] gi|50875537|emb|CAG35377.1| probable DNA polymerase III, beta chain [Desulfotalea psychrophila LSv54] Length = 376 Score = 120 bits (301), Expect = 3e-25, Method: Compositional matrix adjust. Identities = 104/398 (26%), Positives = 195/398 (48%), Gaps = 37/398 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ TV + D+LE LG I + T+ + +VL++ ++G L + A+ EI + I A Sbjct: 3 LQCTVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIKAE 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+T+ + +++IVR + G++ +E E + V I G S + L E+P Sbjct: 63 IHGEGSLTLPSKKIFEIVR--ESGSEKISIEEKE-NSWVVIKAGQSTYNLAGMASDEYPE 119 Query: 121 TKE--EEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLK--LCAVA 175 E E+ FE S + + L+E+ F++A E E Y L I F +E K L ++ Sbjct: 120 FPEYDEDSFTVFE--SYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMIS 177 Query: 176 TDGHRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +DGHRL++ ++ + P ++P+K V E + +KD S++VS ++ L Sbjct: 178 SDGHRLSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKD-SIEVSFEHDKLILRN 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ-----AVDRVSIMSSVRIQAVK 287 M V L GEFP Y+ ++ D NC + + ++ R+++ + ++ Sbjct: 237 NQDVMVVSLKTGEFPQYKAIV----DAVQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQ 292 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L++ D + ++ N D+G A + + Y+ P+ + FN +Y ID + + E +++ Sbjct: 293 LAIDKDFMVLSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYF---IDTLQAMEC--EKIK 347 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++SSNS I N D+ ++MPM++ Sbjct: 348 AYINSSNSPCLI---------NSDDDPGFTSIIMPMQL 376 >gi|291294406|ref|YP_003505804.1| DNA polymerase III subunit beta [Meiothermus ruber DSM 1279] gi|290469365|gb|ADD26784.1| DNA polymerase III, beta subunit [Meiothermus ruber DSM 1279] Length = 361 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 88/342 (25%), Positives = 169/342 (49%), Gaps = 21/342 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + + E L RII +++ P+ ++ ++ +D L ++ + E++I +PA Sbjct: 1 MEVRIPKRTLAEGLSILERIIPSRSSNPILTYLPMELSDQGLILRGTNGEVDIEVKLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-----FPE 115 V G + V A IVR F E + + G N L + +PE Sbjct: 61 VQGTGQVLVPAQTFVQIVRSAPGELVELIFGGKE---RLELHSGAFNTQLATTGPDGYPE 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 F E+ +A+S L + R +A +TEE R G+ ++ L+ AVA Sbjct: 118 LSFGPPGPEK------IAASRLAQAITRVRYAASTEEFRAIFRGVQIEMSPTSLR--AVA 169 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 +DG+RLA ++ + Q K+ ++P ++ EI+R+ V ++++E + L E++ Sbjct: 170 SDGYRLACYDLPMQLQTRKL---VIPARSADEIVRVFKDAQGEVALAVAEGTLTLVGEAV 226 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 MSV+L++GEFP+Y VIP S E + LR+++ RV+++S V L + +KL Sbjct: 227 RMSVKLMEGEFPDYGRVIPQSFVLEATLQAEALRESLKRVAVLSDRNNHRVNLLFNHNKL 286 Query: 296 CMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNI 336 + + D G+ E + + + P + + +N ++L++ + I Sbjct: 287 DIDAEG-DYGRGREELGIEASGEPQLMVAYNAQFLIDALAPI 327 >gi|299140891|ref|ZP_07034029.1| DNA polymerase III, beta subunit [Prevotella oris C735] gi|298577857|gb|EFI49725.1| DNA polymerase III, beta subunit [Prevotella oris C735] Length = 373 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 108/388 (27%), Positives = 188/388 (48%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ S + L ++I KN++P+ L + ++ L+I AS E +T + S Sbjct: 1 MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE-LGTEVNISHGDSNFYLQSFPESEF 118 D GS V + D V++L + +SF + E L ++ +G NF Q+ E+ Sbjct: 61 ECDGEGSFAVPNRTILDAVKELPE-QPLSFDVDIEALTIKILYQNGMYNFTAQN--ADEY 117 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P T+ + + S+ L + + R+ FA AT+E+R +NGI+F + + L VATD Sbjct: 118 PHTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GH+L V D + S I+P+K + +LS D+ V + + + + Sbjct: 176 GHKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ + + KL + Sbjct: 235 TCRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEV 293 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNS 355 + ++ D A E + YN M I F L +I++N+ DEV+F+L D S + Sbjct: 294 SSEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDG-----DEVIFQLADPSRA 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V + + ++ N ++MPM Sbjct: 349 GVIVPAQQPEN-------ANILMLIMPM 369 >gi|307152245|ref|YP_003887629.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822] gi|306982473|gb|ADN14354.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822] Length = 393 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/364 (27%), Positives = 178/364 (48%), Gaps = 26/364 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK T +SD+ L + + T P+ +VL A+ GL+ + A + I + Sbjct: 1 MKFTCSQSDLNANLSLVRSAVPNRPTHPILGNVLFVADTEKGLISLTAFDLSLGIRTSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-----FKENELGTEVNISHGDSNFYLQSF 113 A+V+ GSIT++A LL DIV +L +G +I+ E ++V I F L+ Sbjct: 61 ANVEEDGSITLAAKLLNDIVSRLPEG-EITITLEEEDDGEEEQSKVTIESVSGRFQLRGM 119 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +FP E V L S L + + FA +T+E + L G+ ++ L+ A Sbjct: 120 KADDFPELPTIENVEPVRLPVSALTEGLRGSLFAASTDETKQVLTGVHLSGLQDSLEFAA 179 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS------------IIVPRKAVGEILRILSSKDSSVKV 221 TDGHRLAV + + S I +P KA+ E+ RI++ + V Sbjct: 180 --TDGHRLAVVQTPTQQTTEEEDSTPQPESNLEGFAITIPAKALRELERIMTMHKETEAV 237 Query: 222 SL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +L E+++ + S ++ R ++G +PNY+ +IP + + L +++RV++++ Sbjct: 238 ALYVDEAQVIFELGSQRLTSRKLEGAYPNYEQLIPHQFSRSATLERKRLLSSLERVALLA 297 Query: 280 SVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + VK +L+ +K L ++V++ D+G A ESM+ + +I FN KYL++ + + Sbjct: 298 DQKNNLVKFTLAEEKGQLILSVESQDLGSARESMDAQISGESGEIAFNVKYLMDGLKALG 357 Query: 338 SDEV 341 + E+ Sbjct: 358 AAEI 361 >gi|15638997|ref|NP_218443.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025238|ref|YP_001933010.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp. pallidum SS14] gi|4033379|sp|O83048|DPO3B_TREPA RecName: Full=DNA polymerase III subunit beta gi|3322257|gb|AAC65000.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017813|gb|ACD70431.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp. pallidum SS14] gi|291059422|gb|ADD72157.1| DNA polymerase III, beta subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 371 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 17/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI E+ L+ + A +I K + +VLL A LL I+A+ ++ +IP + Sbjct: 1 MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TV L ++V L +++ +E + T N +F L++ FP Sbjct: 61 VLAEGTTTVFCDKLVNVVSALPTKEIELTLCEEQLVITPPN---KKISFQLRTLSHESFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S + +S L+N++ T FA++ + R+++NG+ H++ + + V+TDG Sbjct: 118 CFPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGV--HVDFQYGNIICVSTDGK 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA E + +IVP K +G + R L+ + SV + ++ ++ S Sbjct: 176 RLAYIEKKGESSPQSFSGVIVPTKILGIVNRKLTP-EGSVTLCITSQHVYFFFGGYKFSS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-------VRIQAVKLSLSS 292 LI+G+FPNY+ VIP ++ V L +A+ RVS++ + IQ L+LSS Sbjct: 235 VLIEGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSS 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 T +N ++G A E + Y I NY YL E + +S EV Sbjct: 295 K--AHTQEN-EIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSKEV 340 >gi|183219429|ref|YP_001837425.1| DNA polymerase IIIsubunit beta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909575|ref|YP_001961130.1| DNA-directed DNA polymerase subunit beta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774251|gb|ABZ92552.1| DNA-directed DNA polymerase, beta subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777851|gb|ABZ96149.1| DNA polymerase III, beta chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 372 Score = 120 bits (301), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 89/389 (22%), Positives = 179/389 (46%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV ++ L+ + +I + ++ +Q + + + A+ EI I ++P++ Sbjct: 1 MKFTVNTTEFLKAINSVDGVISVREIKSALSNLKIQTGENEVYLSATDLEIAIKTSVPST 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG----DSNFYLQSFPES 116 + G+ ++ A L I + L + EN +E I+ D+ F + Sbjct: 61 IGEKGTASLPAKQLSSIFKNLNFDTSLLTTTENSENSETTITDASGKMDTKFKVNGIDSE 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + + + + E ++ + +T +AMA EE R+ NG+F + DL V T Sbjct: 121 DIKTIPKVDEASVVEFPCQTIREMFRKTSYAMAIEETRFVFNGLFLKPDNTDL--IVVGT 178 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG RL+ Q +I+P KAV E+L+++ K+++ K+ E +I+++ ++ Sbjct: 179 DGRRLSKIVRKFPKQFPFKNGVIIPHKAVREMLKMMEGKETA-KIGFVEEQIYVSSGNVE 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LIDG FP+Y+ VIP + +RV + + + I + + ++L+ S + Sbjct: 238 LLFKLIDGNFPDYEQVIPKQTTESVRVVKADFLTFLKQALISAEEPSKQIRLAFSKGNVN 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP +M + YN + I F YL +++ + D EV+ +S++ Sbjct: 298 ISSSNPGTMMFDHNMPIEYNGETITIAFKGDYLSDVVKAVD-----DPEVILEFTTSSAP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V KD ++ + V+MPM++ Sbjct: 353 VLF----KDPSDS-----DFVSVIMPMKL 372 >gi|157412339|ref|YP_001483205.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9215] gi|157386914|gb|ABV49619.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9215] Length = 385 Score = 120 bits (300), Expect = 4e-25, Method: Compositional matrix adjust. Identities = 94/356 (26%), Positives = 177/356 (49%), Gaps = 17/356 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 M+I +++ + + + + T P+ ++LL A++G +I +G ++ I + Sbjct: 1 MEIICNQNEFNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL +S +E + I +F L+ P E+ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPTETPVSL-AVDEDSDNILIKSDRGSFTLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + I S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGNKEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K L N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297 Query: 288 LSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + L L ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S+ V+ Sbjct: 298 IKLDDKDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353 >gi|148238337|ref|YP_001223724.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7803] gi|147846876|emb|CAK22427.1| DNA polymerase III beta subunit [Synechococcus sp. WH 7803] Length = 389 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 88/360 (24%), Positives = 180/360 (50%), Gaps = 21/360 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++P Sbjct: 1 MKLVCSQTELNSALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASVD G++T+ A L +IV +L + I+ ++ G +V ++ ++ ++ P +F Sbjct: 61 ASVDTSGAVTLPARLFGEIVSRLSSDSPITLTTDDS-GEQVELTSLSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L + T FA +++E + L G+ H+ + +L A +TDG Sbjct: 120 PDLPLVENGTAVKLDPAALVRALRSTLFASSSDEAKQLLTGV--HLRFDQTRLEAASTDG 177 Query: 179 HRLAVAEVDIVAQIA----KMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSES 226 HRLAV VD Q A + P ++ +P +++ E+ R+++ S VSL Sbjct: 178 HRLAVLSVDDALQDAIANEEAPDAEGSAGLAVTLPARSLREVERLMAGWKGSDPVSLFFE 237 Query: 227 RIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 R + + + V R ++G +PNY+ +IP S + + ++ +++R+++++ Sbjct: 238 RGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTMALDRRAFVASLERIAVLADQHNN 297 Query: 285 AVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 V++ K + ++ D D+G ES+ + I FN +Y+L+ + + ++ +V Sbjct: 298 VVRIISDPSKGLIQISADAQDVGSGSESLPAQIEGEEVQIAFNVRYVLDGLKAMDAERIV 357 >gi|328956384|ref|YP_004373770.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4] gi|328672708|gb|AEB28754.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4] Length = 380 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 89/342 (26%), Positives = 177/342 (51%), Gaps = 19/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++RS L+ L R I + TIP+ + + AND L + S +I I IP S Sbjct: 1 MKFTIKRSAFLKSLSDVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G I + A +IV+KL ++ I + I+ ++F + Sbjct: 61 EDDNLLVIEKTGGIVLQARFFSEIVKKLPEETMTIEILDH----FQALITSATASFTING 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +P + SF L ++ K ++ +T A++T E R L G+ +I E+ K Sbjct: 117 LDPNNYPHLPIIDTKESFTLPVNLFKQVIGQTVIAISTHESRPILTGV--NIVIENGKFL 174 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 AVATD HRL+ + + Q +K +II+P K++ E+ R L ++++ ++E+++ Sbjct: 175 AVATDSHRLSQRVIPLEMNDEQASKKYNIIIPGKSLIELSRTLDENSDTIEMMITENQVL 234 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E++ RL++G +P+ + +IP ++ E+ N ++L +++R S++S + VK+ Sbjct: 235 FKSENMYFYSRLLEGYYPDTKRLIPDNSSTEISFNASSLLGSIERASLLSHEGKNNVVKI 294 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 +++ + + ++ ++PD+G E ++ E P+++ FN Y+ Sbjct: 295 TINPNLVEISGNSPDVGNVNEELDYQSVEGEPIELSFNPDYM 336 >gi|30171300|gb|AAP20074.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|30171304|gb|AAP20076.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 217 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 119/192 (61%), Gaps = 12/192 (6%) Query: 65 GSITVSAHLLYDIVR---KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GSITVS L +I R +L D +IS KE +++IS +SN+ L + P FP+ Sbjct: 22 GSITVSGQKLLNICRNSSELSD-IKISLNKE-----KIHISLENSNYILNTLPAENFPNH 75 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 ++V F ++S +LK ++E+THF+M +++RYYLNG+ N+ L VATDG+RL Sbjct: 76 NNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLEKNKTS--LYTVATDGYRL 133 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 +A+ + + + S I+PRK + E+ ++L+ + + V + ++ I + IE L +V+L Sbjct: 134 GIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLIFTVQL 192 Query: 242 IDGEFPNYQNVI 253 I+GE+P+Y++++ Sbjct: 193 IEGEYPDYKSIL 204 >gi|332709092|ref|ZP_08429061.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L] gi|332352143|gb|EGJ31714.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L] Length = 393 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 103/410 (25%), Positives = 201/410 (49%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA---NDGLLEIKASGPEIEITGAI 57 MK+ +SD+ L R++ + T PV +VLL+A N +L + A + I + Sbjct: 1 MKLVCSQSDLNTNLSLVSRVVPSRPTHPVLGNVLLEADQKNQRVL-LTAFDLSVGIQTSF 59 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-----VNISHGDSNFYLQS 112 A V+ G IT+ A LL DIV +L G +I+ +++ GT+ V ++ + ++ Sbjct: 60 NADVETGGEITLPAKLLNDIVSRLPSG-EITL-EDDGTGTDSDSLIVTLTSATGRYQVRG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + + VLK ++ + FA +++E + L G+ H+ + KL Sbjct: 118 MSSEEFPELPEVNTSVAVHIPVEVLKAGLQGSLFATSSDETKQVLTGV--HLTVQSDKLE 175 Query: 173 AVATDGHRLAVAEVD-IVAQIAKMPS------------IIVPRKAVGEILRILSSKDSS- 218 ATDGHRLAV E + + + A + +P +A+ E+ RI+S ++ Sbjct: 176 FAATDGHRLAVVETNRTIEESATTEATQELDDHDFPLEFTLPARALRELERIVSKAEAQD 235 Query: 219 -VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 + + +I ++ R ++G++P+Y ++P +++L ++ L AV+R+++ Sbjct: 236 IIAIQFEPGQIVCQGGEQLLTSRTLEGQYPSYHQLLPKHFERQLILDRRQLLSAVERIAV 295 Query: 278 MSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 ++ + VK ++ S +L ++V+ D+G ESM V + ++I FN KYL++ + Sbjct: 296 LADQKNNIVKFNIDSVNQRLHLSVEAKDLGSGRESMEVEISGDSLEIAFNVKYLIDGLKA 355 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S+ E+ +++ +NS V + Y++MP++I Sbjct: 356 LST-----SEIKMQMNEANSPVIFMPL---------GGLKMTYLIMPVQI 391 >gi|221194950|ref|ZP_03568006.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626] gi|221184853|gb|EEE17244.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626] Length = 366 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 96/387 (24%), Positives = 192/387 (49%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M TV +S + L + I ++P+ V L+A +G LEI+++ + I + A+ Sbjct: 1 MNFTVSQSSLQTALDIVMKGIGSNPSLPILSGVYLKAQEGTLEIQSNDLTVSIKHKVAAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G VSA +L IV+ L D A I+F E+E + ++ S ++L P +++P+ Sbjct: 61 VEEEGETVVSAKVLQTIVKNLPDAA-ITFKYEDE---GIKLTCQKSTYHLTVLPVADWPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S EL S++L +V++ + ++ + R L GIF E ++L VATD R Sbjct: 117 FPEVVPEKSIELPSALLSKMVDKIYRVVSHDVSRPILQGIFLTAEENTIRL--VATDSFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + I+ +A+ +L + + ++ V +S++++ + + R Sbjct: 175 LAVCDTHTDTPTGEKFEAIISGEAIHNVLS-MRTMTETIMVGISDNQVVFTFGNTTHVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLCMT 298 I+G +P+Y+ ++ S + + A+ VS++ +++ AV+L + ++ ++C + Sbjct: 234 KIEGNYPDYKKLLAPSCSTAITLPIEETSAAIKHVSVV-ALQNFAVRLDIDAEGGEICFS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G A E++ + I FNY+Y+ + ++ +S + V E+ L + +VF Sbjct: 293 SSSPDQGNASETIKADVEGKSLTIGFNYQYVFDCLNALSEQKSVRFEL---LSETQPAVF 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 K+N Y+L+P+ + Sbjct: 350 ----------KASGKINYLYLLIPVHL 366 >gi|330898607|gb|EGH30026.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] Length = 195 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 66/209 (31%), Positives = 120/209 (57%), Gaps = 14/209 (6%) Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + Sbjct: 1 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 60 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 61 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 120 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 121 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 175 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 176 ALVQESDND---------DSAYVVMPMRL 195 >gi|116514953|ref|YP_802582.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256807|gb|ABJ90489.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 368 Score = 120 bits (300), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 91/391 (23%), Positives = 188/391 (48%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++D RII + P+ +++++ N+ L++ +S E+E+ I Sbjct: 1 MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G + +S + +I R + A + F + ++ I +S F L + + Sbjct: 61 FFILYKSGCVAISGKKILNICRNISKDAILHF---KIINKKMRICILNSLFELNTMICTN 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + F ++ +LK ++ F++A +IR LNGI + +L V TD Sbjct: 118 FPIFNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNNL--YGVTTD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G+RL+V ++ I I SII+ +K++ E+ R+++ + VKV ++ + + I + + Sbjct: 176 GYRLSVYKIAINLNIKNF-SIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG FPNY +VI + + L++++ + SI+ + + V L+ +KL + Sbjct: 235 KTKILDGNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLII 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV---FRLDSSN 354 T N + K+ +S + + + N YLL+I++ V+D EV+ FR+ S+ Sbjct: 295 TSKNQEDEKSYDSFIIDNKKIKISFHINVFYLLDILN------VLDVEVITISFRIPISS 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K Y++MP+++ Sbjct: 349 IQI-----------QSDKKKEILYIIMPLKL 368 >gi|150387855|ref|YP_001317904.1| DNA polymerase III subunit beta [Alkaliphilus metalliredigens QYMF] gi|149947717|gb|ABR46245.1| DNA polymerase III, beta subunit [Alkaliphilus metalliredigens QYMF] Length = 368 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 169/336 (50%), Gaps = 18/336 (5%) Query: 14 LGHACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69 L H+ I+++ K T+P+ + ++ N+ L + + EI I + A V G + V Sbjct: 10 LMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEHVMEADVLQEGIVVV 69 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK--EEEYV 127 A L +I+RKL D KEN ++ I + F + + EFP EE+ V Sbjct: 70 DARLFSEIIRKLPDAEVDITLKEN---NQLEIKCASTEFNILVYSPDEFPELPIVEEDQV 126 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 Y E+A + K ++ +T FA + +E R L G+ I E L + VA DG+RLA+ + Sbjct: 127 Y--EIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEENTLNM--VALDGYRLALRKGK 182 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 I ++VP K + E+ RIL+ ++ + ++L+ + + RL++GEF Sbjct: 183 ISGN--SNHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLISRLLEGEF 240 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMG 305 NY+ ++P + ++ + + +++R S+++ R V+ ++ +K+ +T N ++G Sbjct: 241 INYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVIT-SNSELG 299 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 K E +N+ ++I FN KY ++ + I +EV Sbjct: 300 KVHEEINIVLEGEDIEIAFNSKYFIDALKVIDDEEV 335 >gi|30171298|gb|AAP20073.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|30171302|gb|AAP20075.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 200 Score = 119 bits (299), Expect = 5e-25, Method: Compositional matrix adjust. Identities = 68/192 (35%), Positives = 119/192 (61%), Gaps = 12/192 (6%) Query: 65 GSITVSAHLLYDIVR---KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GSITVS L +I R +L D +IS KE +++IS +SN+ L + P FP+ Sbjct: 17 GSITVSGQKLLNICRNSSELSD-IKISLNKE-----KIHISLENSNYILNTLPAENFPNH 70 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 ++V F ++S +LK ++E+THF+M +++RYYLNG+ N+ L VATDG+RL Sbjct: 71 NNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLEKNKTS--LYTVATDGYRL 128 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 +A+ + + + S I+PRK + E+ ++L+ + + V + ++ I + IE L +V+L Sbjct: 129 GIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLIFTVQL 187 Query: 242 IDGEFPNYQNVI 253 I+GE+P+Y++++ Sbjct: 188 IEGEYPDYKSIL 199 >gi|282898715|ref|ZP_06306703.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii CS-505] gi|281196583|gb|EFA71492.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii CS-505] Length = 382 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 181/357 (50%), Gaps = 23/357 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T P+ +VLLQA N + + A + I + Sbjct: 1 MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADVNTNQVSLTAFDLSLGIRTSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VN--ISHGDSNFYLQSFPE 115 A V G++ + A +L DI +L +G + + TE +N + + + L+S Sbjct: 61 AEVIEGGAVALPAKILVDITSRLPEGDITLDDQSGDSTTEGINFILKPKNGKYELRSMGA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E ++ ++ L ++ + FA +++E + L G+ + ++ L+ A Sbjct: 121 EEFPELPLIESSNPIQITTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEFAA-- 178 Query: 176 TDGHRLAVAEVDIVAQIAKMP-------SIIVPRKAVGEILRIL--SSKDSSVKVSLSES 226 TDGHRLAV E I + P + VP +A+ E+ R+L S+ + ++ + L E Sbjct: 179 TDGHRLAVLET-----INERPLENDEQLEVTVPARALRELQRMLNHSASEEAISLCLDEG 233 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I ++ ++ R ++G++P+Y+ +IP +++L + ++R++I++ + V Sbjct: 234 QIVFAWQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNNIV 293 Query: 287 KLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 K+S+++ ++ ++ + D+G A ESM + +DI FN KYLLE + + S E+ Sbjct: 294 KISMNTGEQEITLSCEAQDVGNATESMPAQISGEDIDIAFNVKYLLEGLKELPSTEI 350 >gi|58336356|ref|YP_192941.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM] gi|227902593|ref|ZP_04020398.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC 4796] gi|58253673|gb|AAV41910.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM] gi|227869682|gb|EEJ77103.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC 4796] Length = 376 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L+ + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRTTIPILSGIKLELTNEELILTGSDTDISIEIKIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF + T++ IS +S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIIKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + +K AVAT Sbjct: 118 NYPRLPEISDSASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +S+ I +L+ Sbjct: 176 DSHRLSQRIIALENGPQSETDLIIPGKSLQELARIIGETDPEVKVCPGDSQALFVIGNLA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + L A++R S+++ R V L+L ++K Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDTEKQ 295 Query: 296 CMTVDNPDMGKAIESMNVYYNEC-------PMDICFNYKYLLEIIDNISSDEVV 342 + GK+ E NV + ++I FN Y+ + + +D V+ Sbjct: 296 TAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|325269039|ref|ZP_08135660.1| DNA-directed DNA polymerase III beta subunit [Prevotella multiformis DSM 16608] gi|324988660|gb|EGC20622.1| DNA-directed DNA polymerase III beta subunit [Prevotella multiformis DSM 16608] Length = 374 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 97/371 (26%), Positives = 182/371 (49%), Gaps = 25/371 (6%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75 R+I KN++P+ L + ++ L I AS E + G + +++ C G V+ H + Sbjct: 19 RVINSKNSLPILDCFLFEIHNRQLTITASDSENVMRGTL--NLEDCEGEGDFAVNNHTIL 76 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134 D V++L + E+ V +G NF + S E+P + E + + + Sbjct: 77 DAVKELPEQPLALAVNMEEMKIYVTYQNGSYNFPIMS--AEEYPRVQPMSESATTVTIGA 134 Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 + L + + R+ FA A +E+R +NG++F + E+ L VA+DGH+L ++ V ++ Sbjct: 135 AKLSDSLTRSLFATAQDELRPVMNGVYFDLKED--GLAVVASDGHKLVRNKIFTVK--SE 190 Query: 195 MP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 P S ++P+K + +LS V + + ++ +++ RLI+G++PNY +VI Sbjct: 191 TPASFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLACRLIEGKYPNYNSVI 250 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMN 312 P N + ++ +L A+ RV +S Q ++ +SS L + ++ D A ES+ Sbjct: 251 PLDNPNLVTIDRKSLIGALRRVLPFASDSSQLIRFYVSSGLLELNAEDIDFATSAKESVT 310 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 Y PM I F +L+I++N+ SD+V V+ D S + V + +S+ Sbjct: 311 CEYGGNPMSIGFKGSSMLDILNNLESDDV----VIQLADPSRAGVIVPAMQPESE----- 361 Query: 373 KVNAFYVLMPM 383 + ++MPM Sbjct: 362 --DILMLIMPM 370 >gi|222150252|ref|YP_002559405.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus caseolyticus JCSC5402] gi|222119374|dbj|BAH16709.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus caseolyticus JCSC5402] Length = 377 Score = 119 bits (299), Expect = 6e-25, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 173/355 (48%), Gaps = 23/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T++R + L + I + T+PV + L D L + S E+ I IP+ Sbjct: 1 MKFTIQRDYFIAQLNDTLKAISPRTTLPVLTGIKLDVFDNRLVLTGSDSEVSIEITIPSE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 +V+ GSI + DI++KL D I E + I+ G S F + Sbjct: 61 LNHEEILTVENKGSIVLPGRFFVDIIKKLPADTVTI----ETNDQFQAKITSGQSEFNVS 116 Query: 112 SFPESEFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 ++P EEE + L VLKN++++T+FA++T E R L G+ + I D Sbjct: 117 GIDSDQYPLLPQVSEEEAI---TLPVKVLKNIIKQTNFAVSTSETRPVLTGVNWLI--RD 171 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L ATD HRLA+ ++ + ++I+P KA+ E+ +I+ + ++ + + +++ Sbjct: 172 NVLNCTATDSHRLALRKLKLEDTNIDEINVIIPGKALSELNKIIGDNEDTIDIFFAANQV 231 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287 ++ RL++G +P+ + P ++ L +N + A+DR S+++ +K Sbjct: 232 LFKFGHINFISRLLEGNYPDTSRLFPEISETALSINNGDFFHAIDRASLLAREGGNNVIK 291 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 LS + + + ++ +P++G E++ ++ + I FN KY+++ + I ++V Sbjct: 292 LSATDNTVELSSTSPEIGTVKENVKTSKFDGTGIKISFNSKYMMDALRAIDVEDV 346 >gi|260435668|ref|ZP_05789638.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109] gi|260413542|gb|EEX06838.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109] Length = 385 Score = 119 bits (299), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 92/356 (25%), Positives = 175/356 (49%), Gaps = 17/356 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKVVCSQSELNSALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + ++ ++ G +V ++ ++ ++ ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLSSDSPVTLAVDDS-GEQVQLTSLSGSYQMRGMSADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L L ++ T FA + +E + L G+ N+ L+ A ATDG Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177 Query: 179 HRLAVAEV-DIVAQIAKMPS-------IIVPRKAVGEILRILSSKDSSVKVSL--SESRI 228 HRLAV V D + +A S + +P +++ E+ R+++S S VSL ++ Sbjct: 178 HRLAVLNVEDALQDVAVTDSAEDESFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 L ++ R ++G +PNY +IP + ++ L A++R+++++ VK Sbjct: 238 VLLAADQMVTSRTLEGTYPNYGQLIPDGFTRTFGMDRRALIAALERIAVLADQHNNVVKF 297 Query: 289 SLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 S + + ++ D D+G ES+ M I FN +YLL+ + + SD +V Sbjct: 298 SSQPEDGVVQISADAQDVGSGSESLPSNLEGDAMQIAFNVRYLLDGLKAMGSDRIV 353 >gi|116493576|ref|YP_805310.1| DNA polymerase sliding clamp subunit [Lactobacillus casei ATCC 334] gi|191636826|ref|YP_001985992.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei BL23] gi|239630806|ref|ZP_04673837.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116103726|gb|ABJ68868.1| DNA polymerase III, beta subunit [Lactobacillus casei ATCC 334] gi|190711128|emb|CAQ65134.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei BL23] gi|239527089|gb|EEQ66090.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327380863|gb|AEA52339.1| DNA-directed DNA polymerase [Lactobacillus casei LC2W] gi|327384029|gb|AEA55503.1| DNA-directed DNA polymerase [Lactobacillus casei BD-II] Length = 379 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 90/341 (26%), Positives = 164/341 (48%), Gaps = 18/341 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A+ Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F + Sbjct: 61 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + +++ VL+ L+ +T A++ +E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA + + A II+P K++ E+ R+LS +++ ++E+++ Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++ SS + + L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYL 329 + K + ++PD+G E S N E ++I FN Y+ Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGED-LEISFNPDYM 335 >gi|315037232|ref|YP_004030800.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112] gi|312275365|gb|ADQ58005.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112] gi|327182551|gb|AEA30998.1| DNA polymerase III subunit beta [Lactobacillus amylovorus GRL 1118] Length = 376 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 166/350 (47%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T++ +S S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-VSES-SEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F N + +K AVAT Sbjct: 118 NYPRLPEISDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI++ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL--SSD 293 RL+DG +P+ +IP + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 ++ + ++G E ++ E ++I FN Y+ + + +D V+ Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|94984112|ref|YP_603476.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] gi|94554393|gb|ABF44307.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] Length = 360 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 96/367 (26%), Positives = 187/367 (50%), Gaps = 33/367 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + + E LG R+I +++ P+ + ++A++ L + + EI+++ +PA Sbjct: 1 MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQS-----FP 114 V S + AHL IVR L G ++ E EL G E+++ G S+F LQ+ +P Sbjct: 61 VQAPQSFVIPAHLFAQIVRNL--GGELV---ELELTGGELSVRAGGSDFKLQTGDLEAYP 115 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 FP+ + L ++ L + +A + E + GI ++ V Sbjct: 116 PLSFPTHTD------VSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARV--V 167 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+DG+R+A+ D A ++IVP ++ E++R+L KD + + E + + + Sbjct: 168 ASDGYRVAIR--DFPAS-GDGRNLIVPARSADELIRVL--KDGEARFTYGEGLLSVTTDR 222 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293 + M+++L+DGEFP+Y+ VIP ++ + T L++AV RV++++ V+ +S Sbjct: 223 VRMNLKLLDGEFPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEG 282 Query: 294 KLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 KL + + D G+A ++++V E M + FN +++L+ + I D E++F Sbjct: 283 KLRLAAEG-DYGRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGDA----ELLFS-G 336 Query: 352 SSNSSVF 358 S++ ++F Sbjct: 337 STSPAIF 343 >gi|325955723|ref|YP_004286333.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC] gi|325332288|gb|ADZ06196.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC] Length = 376 Score = 119 bits (298), Expect = 7e-25, Method: Compositional matrix adjust. Identities = 92/350 (26%), Positives = 166/350 (47%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T++ +S S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-VSES-SEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F N + +K AVAT Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI++ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL--SSD 293 RL+DG +P+ +IP + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 ++ + ++G E ++ E ++I FN Y+ + + +D V+ Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|261879423|ref|ZP_06005850.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis DSM 17361] gi|270333991|gb|EFA44777.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis DSM 17361] Length = 374 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 169/345 (48%), Gaps = 10/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ + + L ++I KN++P+ L+Q ++G L I AS E + ++ Sbjct: 1 MRFTLSSTALNSRLQTLSKVINNKNSLPILESFLMQVHNGQLTITASDNENMMQASLALD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + D G + +H + D V++L + Q F+ N EV + + + + + ++P Sbjct: 61 NFDTDGVFAIPSHTILDAVKELPE--QPLTFEVNPDTYEVTVGYQNGQYQFAAQNADDYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + V+ + + +L N + RT FA EIR +NG++F + + L VA+DG Sbjct: 119 RNEPLSGDVHVITIDAEMLCNSLSRTLFATDNNEIRPVMNGVYFDLTPDCLSF--VASDG 176 Query: 179 HRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 H+L I + I S+I+P+K + L+ + V + ++ + + Sbjct: 177 HKLVRCRNYSIKSDIPA--SLIMPKKPATLLKNTLAKEHGDVVIKFNDQSAEVKYSEGLL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+G FPNY IP N E+ ++ L A+ RV +S+ Q V+ L++ L + Sbjct: 235 ICRLIEGVFPNYNAAIPTDNPNEVNIDRKVLLSAIRRVLPFASMSSQLVRFRLNTGSLEV 294 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++ D +A E + YN PM I F +L+EI++++ +DE+ Sbjct: 295 SSEDLDFATRAKEELVCEYNGQPMQIGFRGDFLMEILNSLDTDEI 339 >gi|206895201|ref|YP_002246438.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus DSM 5265] gi|206737818|gb|ACI16896.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus DSM 5265] Length = 361 Score = 119 bits (298), Expect = 8e-25, Method: Compositional matrix adjust. Identities = 98/390 (25%), Positives = 188/390 (48%), Gaps = 34/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + + ++++ L R + +K T PV ++LL+A D L+I + + ++ I Sbjct: 1 MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIALE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 TV A D V+K G+++ EN L +IS G ++ L + P E+P Sbjct: 61 AAEELRTTVPAKFFSDFVKK-APGSEVQLEVGENYL----SISSGSASLKLSTLPPEEYP 115 Query: 120 STKEEEYVY--SFELASSVLKNLVERTHFAMATEEIR-YYLNGIFFHINEEDLKLCAVAT 176 E E + +F + ++ LK V+ ++ E+R L GI +E L AV T Sbjct: 116 ---ELEVLQGNTFTVDAATLKKAVDAVKKNVSKGELRNPVLEGILLDGSEG--MLIAVGT 170 Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 DGHRLA + D+ V + A +P+ ++ ++ L + S+ ++ + + + + Sbjct: 171 DGHRLAACKTDLQVTETACLPADVL-----SDVCDTLVNTGSTAYITFGDGEVAFENDVI 225 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +R ++G+FP +++VIP + + +R++ + +DR +++ AV+L+L L Sbjct: 226 YAVIRTLEGQFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSL 285 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + P++G +ES+ V + I NY YL +++ I +D VVF L S Sbjct: 286 TISAEVPELGSFVESIPVDKEGPDLKIACNYAYLQDVLSGID-----EDNVVFGLTSPLH 340 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR + + N ++MPM++ Sbjct: 341 PIVIRPVESE---------NYVGLVMPMKL 361 >gi|54021966|ref|YP_116208.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152] gi|54013474|dbj|BAD54844.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM 10152] Length = 386 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 104/403 (25%), Positives = 184/403 (45%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK V R D E + R + + +PV VLL AN DGL SG + E++ + Sbjct: 1 MKFRVAREDFAESVAWVARSLPSRPPVPVLGGVLLVANEDGL---TVSGFDYEVSAQMRV 57 Query: 60 SVDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFP 114 + +V G + VS LL DI + L + K ++ GT V I+ G + F L + P Sbjct: 58 AAEVAGPGEVLVSGRLLADITKALSN-------KPVDVSVDGTRVLITCGSAKFSLPTMP 110 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P E + EL+ V V + A ++ L GI I E ++ Sbjct: 111 VEDYPQLPEVPQ-QTGELSVDVFAEAVGQVAVAAGRDDTLPMLTGIRVEI--EGSQVVLA 167 Query: 175 ATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSL-----SESRI 228 ATD RLAV ++ + ++++P + + E + L + D+ V++SL S+ + Sbjct: 168 ATDRFRLAVRHIEWTPARPDIETAVLIPARTLSEAAKTLGASDAPVQLSLGTGAGSDGLL 227 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + RL+D EFP ++ ++P + + L +A+ RV++++ R V+L Sbjct: 228 GIVNAGRRTTTRLLDAEFPKFRQLLPKEHTSVATLAVAALTEAIKRVALVAE-RGAQVRL 286 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S++ L ++ D G+A E + + P+ I FN YL +D +S+ D V F Sbjct: 287 EFSTEGLLLSAGGDDAGRAEEWLEADFRGEPLTIAFNPGYL---VDGLSALHA--DRVTF 341 Query: 349 RLDS-SNSSVFIRGKDKDSKNNKDNKVNAF-----YVLMPMRI 385 + S +V + +++ + A Y+LMP+R+ Sbjct: 342 GFTTPSRPAVLLPASEEEPQTLDSGAFAALTGNYTYLLMPVRL 384 >gi|282895332|ref|ZP_06303534.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9] gi|281199638|gb|EFA74498.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9] Length = 384 Score = 119 bits (298), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 93/359 (25%), Positives = 178/359 (49%), Gaps = 25/359 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T P+ +VLLQA N + + A + I + Sbjct: 1 MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADENTNQVSLTAFDLSLGIRTSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDG-----AQISFFKENELGTEVNISHGDSNFYLQSF 113 A V G+I + A +L DI +L +G Q K G + + + L+S Sbjct: 61 AEVIEGGAIALPAKILVDITSRLPEGDITLDNQSGRSKAKAEGINFILKPKNGKYELRSM 120 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 EFP E + +L ++ L ++ + FA +++E + L G+ + ++ L+ A Sbjct: 121 GAEEFPELPLIENSNAIQLTTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEFAA 180 Query: 174 VATDGHRLAVAEVDIVAQIAKMP-------SIIVPRKAVGEILRIL--SSKDSSVKVSLS 224 TDGHRLAV E I + P + VP +A+ E+ R+L S+ + +V + L Sbjct: 181 --TDGHRLAVLET-----INERPLENDEQLEVTVPARALRELQRMLNHSASEEAVSLYLD 233 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 E +I ++ ++ R ++G++P+Y+ +IP +++L + ++R++I++ + Sbjct: 234 EGQIVFAWQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNN 293 Query: 285 AVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 VK+++++ ++ ++ + D+G A ESM + + I FN KYLLE + + S E+ Sbjct: 294 IVKININTGDQEITLSCEAQDVGNATESMPAQISGEDIVIAFNVKYLLEGLKELPSTEI 352 >gi|167461552|ref|ZP_02326641.1| DNA polymerase III subunit beta [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381373|ref|ZP_08055376.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154949|gb|EFX47220.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 380 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 17/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK+T+ ++ + E + H + I K TIP+ + + A + + AS +I I P Sbjct: 1 MKLTILKNYLTESIQHVSKAISSKTTIPILTGIKIDAATSGVTLTASDTDISIQSFTPNE 60 Query: 59 ----ASVDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A +++ GS+ + A +I+RKL +I + T I G S + Sbjct: 61 NEEIAIIELHQPGSVVLPAKFFMEIIRKL-PSQKIEIEVRDHFQT--IIRSGSSEIQIMG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ S +LK ++++T FA++T E L G+ +H+ +D KL Sbjct: 118 LDPEEYPLLPQLEESKMIQIPSDLLKTMIKQTSFAVSTNETTPILTGVLWHV--QDGKLK 175 Query: 173 AVATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +A D HRLA E+ + +A+ +I++ + + E+ +IL +++ + + +S++++ Sbjct: 176 FIACDRHRLASREISLDLDVAQTFHNIVISGRTLNELSKILPDQNALIDILVSDNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 I S+ R++DG +P+ +IP S EL VN L A+DR ++S + VKL + Sbjct: 236 INSILFYSRILDGTYPDTSKLIPQSFQTELIVNTKELADAIDRAYLLSREDKTNIVKLIM 295 Query: 291 SSDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 D+ + ++ + ++GK E +++ + + I FN KY+L+ + + SD + Sbjct: 296 LEDETIEISSSSSELGKVTEQLSLQSFKGERLRISFNSKYMLDALKVMDSDYI 348 >gi|269837341|ref|YP_003319569.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM 20745] gi|269786604|gb|ACZ38747.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM 20745] Length = 379 Score = 119 bits (297), Expect = 9e-25, Method: Compositional matrix adjust. Identities = 109/405 (26%), Positives = 186/405 (45%), Gaps = 48/405 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++ ++ D+ LG+ R + RK+T+PV +VLL A G L++ A+ EI IT A+ Sbjct: 1 MRLSCQQEDLQRALGYVSRAVSRKSTLPVLGNVLLSAEGGRLKLAATNLEIAITAWADAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ITV + LL + V L D I + V +S S +++ +FP Sbjct: 61 VEEEGTITVRSDLLTEFVASLPNDSVSIELDRRT---LSVAVSCARSKAHIKGIGAEDFP 117 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 S + E + A + + + FA AT++ R L G+ L L A Sbjct: 118 TLASIGDTEPTARIDPAE--FREAIGQVAFAAATDDSRPVLAGVLAEFEGASLTLAAA-- 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG RL+V D+V + SI+VP +A+ E+ RI+ + + ++++ +R L + + S Sbjct: 174 DGFRLSVRRCDLVEPSRESLSIVVPARALQELARIIGDLEEPIDLAVTPNRSQLLVRAGS 233 Query: 237 MSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----VRIQA---- 285 + RLIDG FP+ +++IP + + V+ A R + + VRIQ Sbjct: 234 IEFLSRLIDGHFPDVRHIIPQTYGTRMVVSRDEFLAAARRAKLFAQSNNDVVRIQMNPGD 293 Query: 286 ----VKLSLSSDKLCMTVDNPDMGKA-IESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + S + T DN D +A +E + I FN +YL E++ + S Sbjct: 294 GELDPGFATISAQAAETGDNEDHLEAQVEGPQAH-------IAFNGRYLTEVLSVMRS-- 344 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +EV + S N++ + D + +V+MPM I Sbjct: 345 ---NEVALEMTSPNAAGVFKPVGSD---------DFTHVIMPMVI 377 >gi|227529861|ref|ZP_03959910.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227350230|gb|EEJ40521.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 379 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 18/341 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGLLEIKASGPEIEITGAIPA 59 MK T+ RS + L + R I K TIP+ + ++ AND + + S +I I + A Sbjct: 1 MKFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVANDSI-TLTGSNSDITIESVMSA 59 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 S + GSI + A +IV+KL D ++ E G + +I+ G + F + Sbjct: 60 SNEDYELKIAEPGSIVLPARFFSEIVKKLPD-KHVTI--EITSGFQADITSGSAKFQING 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP E E + LA+ +LK ++ +T A++ +E R L GI H+ D L Sbjct: 117 QDAENFPHLPEVEANNTVVLANDMLKEVIRQTVIAVSKQESRPILAGI--HVTLHDGLLT 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA +V + +I+P K++ E+ ++S D VK+ ++++++ Sbjct: 175 AVATDSHRLAQRKVQLDGVGDVNYDVIIPGKSLDELSGMISDVDDDVKMQVTDNQVLFIF 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + RL++G +P +IP ++D + V+ ++DR S++S R VKL++ Sbjct: 235 GNTHFYSRLLEGNYPETSQLIPDTSDTTVEVDAGTFLSSIDRASLLSHESRNYVVKLTIK 294 Query: 292 -SDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 +KL ++ D+PD+G E + E ++I FN Y+ Sbjct: 295 PGEKLVRISGDSPDIGMVEEDVATSAVEGNDLEISFNPNYM 335 >gi|220905645|ref|YP_002480956.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7425] gi|219862256|gb|ACL42595.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7425] Length = 374 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 92/348 (26%), Positives = 173/348 (49%), Gaps = 13/348 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +SD+ L R++ K T PV +VLL+A L + + + IPA Sbjct: 1 MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +V GS T+ A DIV +L + A I+ E+ V ++ G ++ +Q EF + Sbjct: 61 TEVPGSFTLPARFFNDIVSRLPN-APITIAVESP---TVTLACGAGHYQMQGLEAEEFTA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L SS+L ++ T FA +T+E + L G+ + + L+ ATDGHR Sbjct: 117 LPDLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEFA--ATDGHR 174 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----L 235 LAVA P S+ VP KA+ E+ R+L ++ + ++++ + Sbjct: 175 LAVAYGQPEEFSPDTPLSVTVPAKALRELERMLGRTPVALTLRCDQTQVVFEFATEQGMA 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--D 293 +S RL++G +PNY+ ++P ++++ V ++R+++++ + VK+ L + Sbjct: 235 RLSSRLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQ 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +L ++ + P G ES+ + +++ FN KYL++ + +++ EV Sbjct: 295 QLDVSAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTASEV 342 >gi|227533505|ref|ZP_03963554.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188834|gb|EEI68901.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 434 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/341 (26%), Positives = 164/341 (48%), Gaps = 18/341 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A+ Sbjct: 56 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 115 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F + Sbjct: 116 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 172 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + +++ VL+ L+ +T A++ +E R L G+ I + +L A Sbjct: 173 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 230 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA + + A II+P K++ E+ R+LS +++ ++E+++ Sbjct: 231 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 290 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++ SS + + L++ Sbjct: 291 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 350 Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYL 329 + K + ++PD+G E S N E ++I FN Y+ Sbjct: 351 ADQKATIYGNSPDVGNVEEVLSFNKLSGE-DLEISFNPDYM 390 >gi|218437347|ref|YP_002375676.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424] gi|218170075|gb|ACK68808.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424] Length = 394 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 96/364 (26%), Positives = 179/364 (49%), Gaps = 25/364 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK T +SD+ L R + + T P+ +VL A+ GL+ + A + I + Sbjct: 1 MKFTCSQSDLNTNLSLVSRAVSSRPTHPILGNVLFVADLEQGLISLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGA-----QISFFKENELGTEVNISHGDSNFYLQSF 113 A+++ G+IT+ A LL DIV +L +G + +E++ T+V+I F L+ Sbjct: 61 ATIEEEGTITLPAKLLNDIVSRLPEGEITITLEPEEDEEDQEHTKVSIESVSGRFQLRGM 120 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +FP V +L S L ++ + FA +T+E + L G+ F ++ L+ A Sbjct: 121 KADDFPELPTIANVDPLKLPISALTEGLKGSLFAASTDETKQVLTGVHFAGQQDSLEFAA 180 Query: 174 VATDGHRLAVAEVDIVAQIAKMP------------SIIVPRKAVGEILRILSSKDSSVKV 221 TDGHRLAV + + +I +P +A+ E+ RI+ + + Sbjct: 181 --TDGHRLAVVQTPTQETTEEEQTPPEPSSNLEGFAITIPARALRELERIMGMHKETDAI 238 Query: 222 SL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +L E ++ + S ++ R ++G +PNYQ +IP + + L +++RV++++ Sbjct: 239 TLYVDEGQVIFELGSQRLTSRKLEGAYPNYQQLIPRQFSRSATLERKRLLSSLERVALLA 298 Query: 280 SVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + VK +LSS+K L ++V++ D+G A ES+ +I FN KYL++ + + Sbjct: 299 DQKNNLVKFTLSSEKGQLILSVESQDLGSARESIPAEIIGESGEIAFNVKYLMDGLKALP 358 Query: 338 SDEV 341 + ++ Sbjct: 359 ASDI 362 >gi|293380892|ref|ZP_06626928.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1] gi|290922565|gb|EFD99531.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1] Length = 376 Score = 119 bits (297), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T++ IS +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + +K AVAT Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDVENQ 295 Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342 + GK+ E NV + N ++I FN Y+ + + +D V+ Sbjct: 296 SAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|223983628|ref|ZP_03633806.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM 12042] gi|223964395|gb|EEF68729.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM 12042] Length = 373 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/336 (26%), Positives = 168/336 (50%), Gaps = 16/336 (4%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGS 66 L R I + +P + ++ N + + S +I I + S V GS Sbjct: 14 LNTVSRAISSNSPLPALSGIKIEVNQDSIVLTGSDSDISIQTTLKGSDEEINLIVKETGS 73 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 I + A + +IVRK+ D +I E G+ IS + F + ++P+ Sbjct: 74 IVIEAKYILEIVRKI-DADEIEL--EIVDGSLTKISGMSAEFRINGMRALDYPAIDFTRP 130 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 FE+ + VL ++ +T FA + E R L G+ + + +L VATD +RLA V Sbjct: 131 GQQFEMDADVLLKVISQTTFATSDRETRPVLTGVNMKCSGK--RLECVATDSYRLARKIV 188 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 D+ ++ +I +P K++ E+ + ++ +DSSV +++S+ + I + RLIDG + Sbjct: 189 DLTSE--NNFNITIPAKSLNEVSKTIA-QDSSVLIAVSDKKAQFWIGETVIQTRLIDGAY 245 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P +IP EL V+ ++ A+DR S + + I VKLS +S+++ ++ + ++G Sbjct: 246 PETARLIPTEFAHELTVDSRDMLNAIDRASFIKNEGISIVKLSANSEEVVISSKSQEVGS 305 Query: 307 AIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 ++E++N+ Y P++I F+ KY+ E I +S+ + Sbjct: 306 SVENLNILTYEGNPLEISFSGKYVFEAIRVLSATTI 341 >gi|198274538|ref|ZP_03207070.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135] gi|198272592|gb|EDY96861.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135] Length = 372 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/389 (24%), Positives = 189/389 (48%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+I V ++ +L+ L RII+ KNT+P + L ++ G +++ A I+ + Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D V S SA L D ++++ + IS +++ E+ + + + F + + Sbjct: 61 KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEK-----EMIVKYANGKFTMPIEDGKQ 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P ++ +SF L+ + L V + F A +E+R +NG++F I+ E K V TD Sbjct: 116 YPEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSYVGTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G RLA+ E+ + I+P K + ++ ++V ++ + + + +S + Sbjct: 174 GSRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 R+I+G +PNY+ VIP + K + + +L A+ RVS+ ++ V L L + Sbjct: 234 VCRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLI 293 Query: 298 TVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 T + D K+ E + + C ++I F +L+E++++I S+++ + D S ++ Sbjct: 294 TAHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDI----SISMTDPSRAA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V R +++ + Y+LMPM I Sbjct: 350 VLSRCDEEER--------SLTYLLMPMSI 370 >gi|169335350|ref|ZP_02862543.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM 17244] gi|169258088|gb|EDS72054.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM 17244] Length = 368 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 103/390 (26%), Positives = 196/390 (50%), Gaps = 29/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V+R++ L+ L + +N + +LL++ D +L + A+ EI+I+ I A Sbjct: 1 MNIKVDRNEFLKALITVSKATTLRNVGSLE-GILLESYDDVLSLYATNKEIQISTIIDAK 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +++ +L DIVR +G EN + ++ +S F + + FP+ Sbjct: 60 VIREGKLLINSRILSDIVRSFDNGEVEIDADEN---NNIKLTCLNSKFNITAMDHRTFPN 116 Query: 121 TKEEEYVYSF-ELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDG 178 KE + F ++ + V++N+++ T FA AT + + L GI N+ED+K VA DG Sbjct: 117 -KEVYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKF--VAIDG 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+A+ + +VP + E+ +IL++ D V +++++ + NI + Sbjct: 174 FRMAIRSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 L+ G+F +Y N++P + +++N L A +R +I+S R + L + + L + Sbjct: 234 SSLLQGQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356 T + G E++N+ + +DI FN +Y+++ + +V++DE V+ +SSNS Sbjct: 294 TSKSA-YGNVEENININLSGEDLDISFNSRYVIDAL------KVIEDEKVILEFNSSNSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 I+ N F Y++MP+RI Sbjct: 347 CLIKPVSS----------NKFTYLIMPVRI 366 >gi|256843830|ref|ZP_05549317.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256849615|ref|ZP_05555047.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US] gi|262046283|ref|ZP_06019246.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US] gi|256613735|gb|EEU18937.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256713731|gb|EEU28720.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US] gi|260573613|gb|EEX30170.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US] Length = 376 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T++ IS +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + +K AVAT Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295 Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342 + GK+ E NV + N ++I FN Y+ + + +D V+ Sbjct: 296 SAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|227877541|ref|ZP_03995602.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|227862864|gb|EEJ70322.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] Length = 376 Score = 118 bits (296), Expect = 1e-24, Method: Compositional matrix adjust. Identities = 90/350 (25%), Positives = 166/350 (47%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T++ IS +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + +K AVAT Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293 RL+DG +P+ +IP + + + L A++R S+++ + V L + + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGLNNVVTLTLDIENQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 ++ + ++G E ++ E ++I FN Y+ + + +D V+ Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|37522801|ref|NP_926178.1| DNA polymerase III subunit beta [Gloeobacter violaceus PCC 7421] gi|35213803|dbj|BAC91173.1| DNA polymerase III beta subunit [Gloeobacter violaceus PCC 7421] Length = 376 Score = 118 bits (296), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 13/349 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAI 57 MKI ++ + + L R + + T P+ ++LL+A+ + +G ++++ T Sbjct: 1 MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 V+ G T+ A +L DI+ +L + + E+ +++ G S + +Q E Sbjct: 61 AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSED---NAISLVCGSSQYQVQGASAEE 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E + L S V+R+ FA +T+E + LNG+ +E ++ VATD Sbjct: 118 FPKLPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEF--VATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES 234 HRL+ D A +I ++P ++V E+ +IL ++ SV+V E ++ + Sbjct: 176 AHRLSFYRTDFTLPEAGTQAIAAVLPVRSVRELEKILGAQAGDSVEVRFDEKQMIFQFPN 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +++ RL+ G +P+YQ ++P + + L ++R+++++ + VKL + + Sbjct: 236 QTLTTRLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSE 295 Query: 295 LCMT--VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 MT VD PD+G+ ES+ V Y+ + FN +YLLE + + + +V Sbjct: 296 HLMTVSVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATDV 344 >gi|260174985|ref|ZP_05761397.1| DNA polymerase III, beta chain [Bacteroides sp. D2] gi|315923219|ref|ZP_07919459.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697094|gb|EFS33929.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 371 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 180/388 (46%), Gaps = 22/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+ITV ++ +L+ L RII+ KN+IP + L ++ G++ + A I+ I Sbjct: 1 MEITVSKTALLDKLKSIGRIIQPKNSIPAYDNFLFVVDEFGIILVTAGEEGGRISTNIDG 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D S +A L D ++++ + E EL + + + F + ++ Sbjct: 61 KTDFTDRSFMANAKTLLDGLKEIPEQPLTIHLYEKELV----VKYANGKFSIPVEKGDQY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + ++ + L + + F A +E+R LNG++F I+ +++ VATDG Sbjct: 117 PTMSTDNTATPLLVSGNDLLYGIRQVLFCSANDELRPVLNGVYFDIDLDNISF--VATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+ E + + I+P K + I+ V++S++++ I +S + Sbjct: 175 TRLAMIENPSAYTRKERAAFILPSKFAKVLSNIVPEDCMEVEISVNQTNILFEFDSYRLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I+G FPNY+ VIP + T++ A+ RVS+ V L D L +T Sbjct: 235 CRMIEGRFPNYRAVIPQKQPNRAVLKRTDIVSALKRVSVFCDENSSLVILKFCPDSLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D K+ E C ++I F +L+E+I+NI S+++ + D S +S+ Sbjct: 295 AHNLDFCKSAEETVALRTGCDIEIGFKSSFLIEMINNIPSEDI----AITMSDPSKASIL 350 Query: 359 IRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 R D +V + Y+LMP+ I Sbjct: 351 TRC---------DEEVRSLTYLLMPLSI 369 >gi|259047904|ref|ZP_05738305.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC 49175] gi|259035438|gb|EEW36693.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC 49175] Length = 385 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/360 (27%), Positives = 175/360 (48%), Gaps = 30/360 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +V R L+ L R I K TIP+ + L A++ L + S E+ I +P Sbjct: 1 MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60 Query: 59 -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQS 112 +V GSI + A +IV+KL ++ F E + I+ G ++F L Sbjct: 61 DEELQLTVQEPGSIVLPARFFGEIVKKLP----LNLFSIETNDQLQATITAGSASFTLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E E + + + + ++ +T A++T E R L GI H+ +D KL Sbjct: 117 LSAVDYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGI--HMVIKDNKLK 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLS 224 AVATD HRL+ + + +MP+ + +P K + E+ RI+ ++ + +++ Sbjct: 175 AVATDSHRLSQRIIPL-----QMPAGSDALTFEMTLPGKTLLELSRIIDGLET-IDFAIT 228 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RI 283 +++I E+LS RL++G +P+ +I + + V + L AV+R S+MS + Sbjct: 229 DNQILFQTETLSFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKN 288 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 L+LS +++ +T +P++G E + V + P++I FN YL E + S E V Sbjct: 289 NIATLTLSPERILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEALKLFGSSEAV 348 >gi|292669294|ref|ZP_06602720.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia ATCC 43541] gi|292649135|gb|EFF67107.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia ATCC 43541] Length = 380 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 102/396 (25%), Positives = 193/396 (48%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I++ ++D++ L + + K P+ + + A +G LE++ + E+ IPA Sbjct: 1 MNISLAKNDLISALQIVSKGLSTKPQTPILSGIYMTAKEGQLELQTTNYELGFILTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + L + RKL ++S ++ G V I G + F L++ S+FP Sbjct: 61 IHNTGTAVLPGKYLTEFARKLP-AEEVSIDTDSADGLAV-IQSGAARFTLRTMEISDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF--HINEEDLKLCAVATDG 178 + F + L LV+++ FA EE R IF + E ++ AT+ Sbjct: 119 LHHMDGTLHFTIKDRTLARLVKKSAFACLREEQRDR-RPIFTGCQLEVEGKEITFAATNV 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237 HRLAV + + + + A +I+P K + E+ R +SS+ + + V+ S +++ ++ S+ M Sbjct: 178 HRLAV-KSEQLEEDAGQIRVIIPAKFLEEVTRTISSEVPADIHVTCSYNQVSMSSGSIYM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDK 294 + RLI+G FP+Y+ VIP + +V + + AVDR S+++ + VKLS + Sbjct: 237 TARLIEGTFPDYRRVIPREENIRTKVTLDAASFASAVDRASLIARADQYNIVKLSFTQGL 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ ++P++G+A E++ + I FN YL++ + ++ S D + L SN Sbjct: 297 MRISSNSPEIGEAEETIPAEVTGDDVTIAFNASYLMDALKSLDS-----DTCILSLQGSN 351 Query: 355 ------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + IR ++ N YV+ P+R Sbjct: 352 EQGVNLSPMTIR---------EEADPNYIYVVTPVR 378 >gi|295691864|ref|YP_003600474.1| DNA polymerase iii, beta subunit [Lactobacillus crispatus ST1] gi|295029970|emb|CBL49449.1| DNA polymerase III, beta subunit [Lactobacillus crispatus ST1] Length = 376 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIQIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T++ IS +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + +K AVAT Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295 Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342 + GK+ E NV + N ++I FN Y+ + + +D V+ Sbjct: 296 SAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345 >gi|260584258|ref|ZP_05852005.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC 700633] gi|260157776|gb|EEW92845.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC 700633] Length = 385 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 97/357 (27%), Positives = 169/357 (47%), Gaps = 28/357 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK ++ R L+ L R I K TIP+ + L + + + S E+ I +P Sbjct: 1 MKFSINRQAFLKNLADVQRAIPSKTTIPILTGIKLVVSQEGITLTGSDSEVSIEIFLPVE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 S+ GSI + A +IV+KL Q +F E + I+ G + F L Sbjct: 61 HEELQLSIVETGSIVLPARFFGEIVKKL---PQNTFTLETNEQLQATITAGSAAFTLNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P E E + L + + ++ +T A++T E R L GI I LK A Sbjct: 118 SAHDYPQLPEVEKDHVLTLPVPLFRQVILQTSIAVSTAESRPILTGIHMVIANNQLK--A 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLSE 225 VATD HRL+ + + +MP I +P K + E+ RI+ ++ + +++E Sbjct: 176 VATDSHRLSQRIIPL-----EMPETSNALTFEITLPGKTLIELSRIIDGLET-IDFAITE 229 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQ 284 +++ E+LS RL++G +P+ +I + + V ++L AVDR S+MS + Sbjct: 230 NQVLFQTETLSFYSRLLEGRYPDTDRLINDQFNTAITVVASDLVAAVDRASLMSHTDKNN 289 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDE 340 LS++ +++ +T ++P++GK E + V Y +D+ FN YL + + S E Sbjct: 290 IATLSINENRILLTGNSPEIGKVEEEITVENYEGASLDVSFNPDYLKDALRLFGSSE 346 >gi|159029576|emb|CAO90235.1| dnaN [Microcystis aeruginosa PCC 7806] Length = 382 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 180/355 (50%), Gaps = 19/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK T +S++ L R + + T PV +VL A++ G + + A + I + Sbjct: 1 MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPE 115 A V G IT+ A LL DIV +L +G +ENE E +++ + F ++ Sbjct: 61 AEVLEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH---FAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E V E+ + + L E FA + +E + L G+ H+ + L Sbjct: 121 DEFP---ELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGV--HLTKTVDCLE 175 Query: 173 AVATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRI 228 ATDGHRLAV + + V + ++ +P +A+ E+ R++++K + ++ + + +S++ Sbjct: 176 FAATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQV 235 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + ++ R ++G +P Y +IP S D+ L ++ L + ++ V+++S + VK Sbjct: 236 TFEMGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKF 295 Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 SL S D+L + V++PD+G A ESM DI FN KYL++ + + ++++ Sbjct: 296 SLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 350 >gi|320449108|ref|YP_004201204.1| DNA polymerase III subunit beta [Thermus scotoductus SA-01] gi|320149277|gb|ADW20655.1| DNA polymerase III, subunit beta [Thermus scotoductus SA-01] Length = 371 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 171/352 (48%), Gaps = 20/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V ++ + E + R+I +++ P+ ++ L L + + E+++ + Sbjct: 1 MKVKVPKTLLTEHVALLERVIPTRSSNPLFTYLGLALTPDALVLFGTNGEVDLEVRLELP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115 + G V A + +V+ L G Q+ E + G E+++S G + L + +PE Sbjct: 61 TEGEGRFLVPAQPFFQLVKSL-PGDQV----ELDFGAELSLSSGSFSTRLSLAPDEGYPE 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH--FAMATEEIRYYLNGIFFHINEEDLKLCA 173 FPS + Y + V + L +H +A + EE R G+ +E L+ + Sbjct: 116 LFFPSLEGPAEPYPLQTLLPVEELLKALSHVRYAASNEEYRAIFRGVQLEFSEGGLR--S 173 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232 VA+DG+RLA+ + AK ++VP ++V E++R+L + V ++L + L Sbjct: 174 VASDGYRLALYRLAKPQPFAK--KVVVPARSVDEMVRVLKGMGEGEVALALGPGVLGLAT 231 Query: 233 E--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 L M+VRL++GEFP+Y+ VIP + + R+A+ RVS++S + V L Sbjct: 232 GKGQLRMAVRLMEGEFPDYERVIPKEFPLKAAFDVEAFREALRRVSVLSDRQNHRVDLLF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ ++ + D GK E + V P+ + +N +YLLE + +S V+ Sbjct: 292 EERRVLLSAEG-DYGKGQEEIPVRLEGLPLAVAYNARYLLEALSPLSGQAVL 342 >gi|261403878|ref|YP_003240119.1| DNA polymerase III subunit beta [Paenibacillus sp. Y412MC10] gi|261280341|gb|ACX62312.1| DNA polymerase III, beta subunit [Paenibacillus sp. Y412MC10] Length = 380 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 178/354 (50%), Gaps = 17/354 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI++ ++ + E + H + I + TIP+ + L + + AS +I I IPA Sbjct: 1 MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL KEN + IS G + + Sbjct: 61 DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + L +LKN++++T F+++T E L G+ + +N+ +LK Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKFT 177 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A TD HRLA + A ++++ K + E+ +I+ +++ V + ++++++ Sbjct: 178 A--TDRHRLATRSAHLEGADGISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289 I+ + R++DG +P+ +IP S+ EL ++ L +++DR ++S + L + Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 + + ++ + ++GK E +++ + P+ I FN KY+L+++ + S++++ Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVESEQLM 349 >gi|301065127|ref|YP_003787150.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str. Zhang] gi|300437534|gb|ADK17300.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str. Zhang] Length = 379 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 89/341 (26%), Positives = 164/341 (48%), Gaps = 18/341 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A+ Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F + Sbjct: 61 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + +++ V++ L+ +T A++ +E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADAALSVSADVVRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA + + A II+P K++ E+ R+LS +++ ++E+++ Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++ SS + + L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYL 329 + K + ++PD+G E S N E ++I FN Y+ Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGED-LEISFNPDYM 335 >gi|329925046|ref|ZP_08279990.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5] gi|328940165|gb|EGG36497.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5] Length = 380 Score = 118 bits (295), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 178/354 (50%), Gaps = 17/354 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI++ ++ + E + H + I + TIP+ + L + + AS +I I IPA Sbjct: 1 MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL KEN + IS G + + Sbjct: 61 DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + L +LKN++++T F+++T E L G+ + +N+ +LK Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKFT 177 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A TD HRLA + A ++++ K + E+ +I+ +++ V + ++++++ Sbjct: 178 A--TDRHRLATRSAHLEGADGITFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289 I+ + R++DG +P+ +IP S+ EL ++ L +++DR ++S + L + Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 + + ++ + ++GK E +++ + P+ I FN KY+L+++ + S++++ Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVESEQLM 349 >gi|303240058|ref|ZP_07326579.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2] gi|302592327|gb|EFL62054.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2] Length = 367 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 197/388 (50%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++E + + + K+T+P+ +LL+A+ ++ + EI I + A Sbjct: 1 MKVICSKEHLIEGINIVQKAVSTKSTLPILEGILLEASSDF-KLTGNDLEIGIECYVQAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ + DIVR+L D + N + V I +S+F L+ P +P+ Sbjct: 60 IQTQGSIVLNSKMFGDIVRRLPDSEVLIEVLPN---SSVIIECENSHFELKGMPSDNYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F + +++++ +T FA++ +E R L G E ++ V+ DG R Sbjct: 117 LPSIKKENAFIIKQKTVRDMIRQTLFAVSIDENRPILTGSLLECKENNVTF--VSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I+ K ++++P K + EI++IL D + + ++++I +I + R Sbjct: 175 LALRKC-IIENENKSFNVVIPGKTLNEIVKILQPIDEEISIYSTQNQILFDIGKCKVVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299 L++GE+ NY ++IP + ++RV ++ +++R S++++ + VK ++ +K+ ++ Sbjct: 234 LLEGEYLNYNSIIPKDFETKVRVKTKDILSSLERASLITAEEKKYPVKFNVMDEKIVIS- 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + V + +DI FN KY +E + I D+EV SS I Sbjct: 293 SNTEIGAVREEVRVDISGNRLDIGFNPKYFIEALKVIE-----DEEVDIYFTSSIGPCTI 347 Query: 360 R--GKDKDSKNNKDNKVNAFYVLMPMRI 385 R GK + + Y+++P+RI Sbjct: 348 RPIGKQEYA-----------YMILPVRI 364 >gi|267847161|gb|ACY80721.1| chromosomal replication initiation protein [Orientia tsutsugamushi] gi|267847163|gb|ACY80722.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58 I ++ + L I+E+KN + +V L ND + LEI A+ +I I +P Sbjct: 20 IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79 Query: 59 ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 + SIT+ L +IV+K+ D I ++N++ V I G+ F L + P Sbjct: 80 IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKGGEYLEFNLATLPI 136 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173 + FP +E + + + + L ++E T FA++TEE RY LNGI+ H +D K L A Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225 VATDGHRLA A+ +I + + +I+PRK + E+ +I S +V + + Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324 V L L + ++ KA E + Y + + + F Sbjct: 315 VILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAF 374 Query: 325 NYKYLLEII 333 N KYLL+++ Sbjct: 375 NAKYLLDVL 383 >gi|27262250|gb|AAN87406.1| DNA polymerase III, beta chain [Heliobacillus mobilis] Length = 298 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 80/303 (26%), Positives = 152/303 (50%), Gaps = 7/303 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R ++LE + R + + TIP+ + ++A D +L + A+ E+ I IP Sbjct: 1 MEFSCSRGELLEAVNAVSRAVSSRATIPILSGIYMEALDDVLRLVATDMELGIEYTIPVK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS V+A + ++ R+L +G I+F+ E + + + S L + EFP Sbjct: 61 TVQTGSTVVNARIFNEMARRLPEGP-ITFYISGET-PALKVRYHGSELTLNTMNPQEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L K + FA +T+E R + G+ + I+ E+++ VATD HR Sbjct: 119 LPAILDGDHLILTQGQFKEMTRLVCFAASTDESRPWFTGVLWDISPEEVRW--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + +I+ K + ++ R+LS ++S++++++ S+ L + + + + Sbjct: 177 LALLSGQATESVIQQNRQVILHAKTLSDVARLLSDDEASLQITITRSQALLETDRMRVIL 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 R+I+G++P YQ VIP + V+ L +VDR S+ + + + + LSSDK T Sbjct: 237 RIIEGQYPKYQQVIPRDYKTRMTVSVKALADSVDRASLAAIGKEGSNIIKLSSDK--NTF 294 Query: 300 DNP 302 D+P Sbjct: 295 DDP 297 >gi|289422499|ref|ZP_06424342.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius 653-L] gi|289157071|gb|EFD05693.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius 653-L] Length = 367 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 93/342 (27%), Positives = 173/342 (50%), Gaps = 12/342 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + +A + I + TI + +L + +L + E+ I I AS Sbjct: 1 MKLICGQKKLANAINNAQKAINNRTTIELLRGILFSTKEDMLTVTGYDNELCIETKIDAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN--ISHGDSNFYLQSFPESEF 118 V G I V++ L+ DI+RKL D + +S E+ + N IS +S + ++ EF Sbjct: 61 VSKAGKIVVNSKLVGDIIRKLPD-SMVSI----EVDEDYNMFISCLNSRYKIKGINAEEF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + E + + +++++ +T FA A E + L G ++E + + AV DG Sbjct: 116 PVVADLETEKMIKFNQAEMRHMIRQTVFATANEPVNPILAGELIEVSEGHINMAAV--DG 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLAV + + + S+IVP + + +LS D + + I + + ++ Sbjct: 174 YRLAVRKSILEDSSSDDISVIVPGTTLNHLNSLLSD-DGDFYMGVDPKNIVFVLGNTKIT 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RL+DG F Y +++P ++ VN NLR++V+R +++ SS + +K+S+SS + + Sbjct: 233 ARLMDGNFTKYDSLLPKEYMSKVLVNTRNLRESVERAALLFSSEKNNIIKVSVSSGMMVI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 T +N + G A E +N+ ++I FN +Y L+ I NI S+ Sbjct: 293 TANNEN-GNAYEEINIELEGEDLEIAFNSRYFLDGIKNIDSE 333 >gi|33860561|ref|NP_892122.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633503|emb|CAE18460.1| DNA polymerase III, beta chain [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 385 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 99/400 (24%), Positives = 200/400 (50%), Gaps = 32/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 M+I +++ + + + + T P+ ++LL A+ G +I +G ++ I + Sbjct: 1 MEIVCNQNEFNYAIQLVSKAVASRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V+ G+IT+ + LL +IV KL +S +E + I +F ++ P ++ Sbjct: 61 ATVNKSGAITIPSKLLSEIVNKLPSETPVSL-DVDESSDNILIKSDRGSFNIKGIPSDDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E S + S ++ T FA ++++ + L G+ F N + L+ + ATDG Sbjct: 120 PSLPFVESGTSLNIDPSSFLKALKLTIFASSSDDSKQLLTGVNFTFNLKYLE--SAATDG 177 Query: 179 HRLAVAEVD---------IVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAV VD A + S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVVLVDNKENFDEKEDFASNEENLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP + K N + ++++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGSYPNYSQLIPDNFTKIFTFNTKKIIESLERIAVLADQQSSVVK 297 Query: 288 LSLSSDKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L+ L + + D D+G A E + V + DI FN +YLLE + ISS + V Sbjct: 298 IKLNEKDLALVSADAQDIGNASELVPVSFYFDQFDIAFNVRYLLEGLKVISS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 +F+ + + + +D +N+F Y++MP+++ Sbjct: 353 IFKCNLPTTPAVLVPED---------NINSFTYLVMPVQV 383 >gi|17158705|ref|NP_478216.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120] gi|17134654|dbj|BAB77212.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120] Length = 456 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 105/393 (26%), Positives = 188/393 (47%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK+++E+S + E+L A I K T P+ ++LL AN DG++ + + I A Sbjct: 1 MKLSIEQSKLAEILETAYFAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V+ G + + A LL D + ++ +I+ EN+ I+H L EFP Sbjct: 61 NVETSGQVALPAKLLTDTINNVR--GEITLEVENQACI---ITHNSGKCRLIGGKPDEFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L++ L+ +E T + +E + L G+ F I+ K A +T+GH Sbjct: 116 TLPKGENPIEVNLSAKKLQAALEGTLYCTNGDETKLVLTGVNFKIDTN--KWQAASTNGH 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSV-KVSLSESRIHLNIESLSM 237 +LA+ + ++ + VP K++ E+ +ILS S D+SV + LS I ++ + Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLSELSKILSQSADTSVCNILLSNKTIEFSLPHTKV 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295 RL++GE+P ++IP + + E + A+ RVS ++ + + VK+ L + + Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293 Query: 296 CMTVDNPDMGKAIES--MNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+G A++S M N + I N YLLE + +IS+ DE+V R + Sbjct: 294 TLYTEATDIGDAVDSVLMKPATNHSENISIGLNIDYLLEGLKHIST-----DEIVVRCNK 348 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I +N Y++MP+ I Sbjct: 349 PTQPVIICP--------MGGLLNQLYLVMPVEI 373 >gi|88809363|ref|ZP_01124871.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805] gi|88786582|gb|EAR17741.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805] Length = 389 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 88/364 (24%), Positives = 178/364 (48%), Gaps = 29/364 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++P Sbjct: 1 MKLVCSQTELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASVD G++T+ A L +IV +L + I+ ++ +V ++ ++ ++ P +F Sbjct: 61 ASVDTSGAVTLPARLFGEIVSRLSSDSPIT-LATDDTSEQVELTSLSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L + T FA +++E + L G+ H+ + +L A +TDG Sbjct: 120 PDLPLVENGTAIKLDPAALVRALRSTLFASSSDEAKQLLTGV--HLRFDQTRLEAASTDG 177 Query: 179 HRLAV----------------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 HRLAV AE D A +A + +P +++ E+ R+++ + VS Sbjct: 178 HRLAVLSVDDALKDAIAADDSAEADESAALA----VTLPARSLREVERLMAGWKGNDPVS 233 Query: 223 LSESRIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 L R + + + V R ++G +PNY+ +IP S + + ++ +++R+++++ Sbjct: 234 LFFERGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTIGLDRRAFVASLERIAVLAD 293 Query: 281 VRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 V++S K + ++ D D+G ES+ + I FN +Y+L+ + + Sbjct: 294 QHNNVVRISSDPSKGLIQISADAQDVGSGSESLPAQIEGDEVQIAFNVRYVLDGLKAMDG 353 Query: 339 DEVV 342 D +V Sbjct: 354 DRIV 357 >gi|119492671|ref|ZP_01623850.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106] gi|119453009|gb|EAW34180.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106] Length = 391 Score = 117 bits (294), Expect = 2e-24, Method: Compositional matrix adjust. Identities = 100/409 (24%), Positives = 208/409 (50%), Gaps = 44/409 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 M+ VE+ + L R I + T P+ ++LL+A L + A + I ++ Sbjct: 1 MRFIVEQEKLSSNLSLISRAIPSRPTHPILSNILLEATAETQQLSLTAFDLSLGIYTSMS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESE 117 A V+V G T+ A LL DIV +L + + I+ +++ G + ++ + ++ E Sbjct: 61 AEVEVGGRFTLPAKLLNDIVSRLPN-SPIAL--DDDAGESIITLNSSSGRYQVRGMGAEE 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ E S +L + L ++ T FA + +E + L G+ I E+L+ + TD Sbjct: 118 YPALPSIEDGESIQLPADALIEGLKGTLFATSPDETKQVLTGVHLKIQSENLEFAS--TD 175 Query: 178 GHRLAVAEVDIV-----------AQIAKMPSIIVPRKAVGEILRILSS-----KDSS--V 219 GHRLAV + + + A+I + +P +A+ E+ R++++ +DS V Sbjct: 176 GHRLAVVKAESLNGDDQSEAISTAKIEDF-EVTIPARALREVERMIAAASPGKEDSKLMV 234 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 K+ ES++ + + ++ R ++G +P YQ +IP ++ V+ N A++R+++++ Sbjct: 235 KLRFDESQVIFELGNQRLNSRKLEGSYPAYQQLIPNQFLNQINVDRRNFLGALERIAVLA 294 Query: 280 SVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNI 336 S + VK ++ +D K+ ++V+ D+G A+ES++ + + P ++ FN KYL+E + + Sbjct: 295 SQKNDIVKCTIDNDNQKISLSVEAADVGNALESLSAQVSGDEPKELAFNVKYLMEGLKVL 354 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ E+ +L+++ S V + + V Y++MP+++ Sbjct: 355 NT-----SEIQIQLNAATSPVIL---------SPLGGVKMTYLVMPVQL 389 >gi|254424267|ref|ZP_05037985.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335] gi|196191756|gb|EDX86720.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335] Length = 344 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 80/291 (27%), Positives = 155/291 (53%), Gaps = 13/291 (4%) Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A VD G+ T+ A LL DIV +L + I ++N+ V +S + ++ ++ Sbjct: 27 AQVDESGTTTLPAKLLGDIVSRLPN-EDIDISEDNDEPV-VTLSCSAGRYQVRGLSAEDY 84 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E E + ++++ L + FA +++E + L G+ H+ D L ATDG Sbjct: 85 PNLPEIESTDTVKISADALVEGLRGALFATSSDETKQVLTGV--HLTAMDESLEFAATDG 142 Query: 179 HRLAVA----EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNI 232 HRLAV E +M ++ +P KA+ E+ RIL + SS V + L E+++ ++ Sbjct: 143 HRLAVVNTIDETGTSTPDLEM-NVTIPGKALRELERILQAYPSSEPVALKLDETQVVFDL 201 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ RL+DG++PNY +IP +++L ++ +++R+ +++ R VKL++S+ Sbjct: 202 GRQRITTRLLDGQYPNYNQLIPKQFERQLTLDRKQFVSSLERIGVIADQRNNIVKLTISN 261 Query: 293 DK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + L ++V+ ++G +E++ +DI FN +YLLE + + + E+ Sbjct: 262 TQQSLALSVEAQEVGSGLENLPAQVTGDDLDIAFNVRYLLEGLKALPTSEI 312 >gi|224541289|ref|ZP_03681828.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM 15897] gi|224525793|gb|EEF94898.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM 15897] Length = 367 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 170/344 (49%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R +L+ L R + K+ +P+ + + L + AS +I I I Sbjct: 1 MDFNINRLVLLDALTKVSRAVSLKSPLPILTGIKFDLLEDGLVLTASDSDISIQTTINEG 60 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + GS+ +S+ + +I+RK+ DG + + GT I+ S F L +F Sbjct: 61 IIINQTGSVVLSSKYILEIIRKI-DGDTVHIQVVD--GTLTRITSESSLFDLNGSKSFDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + F + S K ++E+T FA + +E R L G+ F +++ KL +ATD Sbjct: 118 PRIDLNKNGKHFSMKSYEFKKIIEKTLFATSEQETRPVLTGVNFKVDQH--KLVCIATDS 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA I I +I++P+K++ +I+ I+ KD + + +S+ ++ I + Sbjct: 176 YRLAQVSQPIDDDIQF--NIVIPKKSLNQIIHIIE-KDEMIDLYVSDRKVLFVIGQYLVL 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG +PN ++ + +N + L A+ R S++S + VKL++S D+ ++ Sbjct: 233 TRLIDGTYPNTSRLVEDQGSYTMSINSSALLGAISRASLLSDEQSNIVKLTMSPDENILS 292 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++G E++ +Y PM I F+ KYL + I +I ++ + Sbjct: 293 SYSQEIGSVEENLTKAFYKGEPMTISFSAKYLADAIRSIGTETI 336 >gi|267847165|gb|ACY80723.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 104/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58 I ++ + L I+E+KN + +V L ND + LEI A+ +I I +P Sbjct: 20 IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79 Query: 59 ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 + SIT+ L +IV+K+ D I ++N++ V I G+ F L + P Sbjct: 80 IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKI---VQIKGGEYLEFNLATLPI 136 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173 + FP +E + + + + L ++E T FA++TEE RY LNGI+ H +D K L A Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225 VATDGHRLA A+ +I + + +I+PRK + E+ +I S +V + + Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324 V L L + ++ KA E + Y + + + F Sbjct: 315 VILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAF 374 Query: 325 NYKYLLEII 333 N KYLL+++ Sbjct: 375 NAKYLLDVL 383 >gi|15805043|ref|NP_293727.1| DNA polymerase III subunit beta [Deinococcus radiodurans R1] gi|6457660|gb|AAF09595.1|AE001864_1 DNA polymerase III, beta subunit [Deinococcus radiodurans R1] Length = 393 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 91/348 (26%), Positives = 177/348 (50%), Gaps = 28/348 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + E LG R+I +++ P+ + ++ ++G L + + EI+++ +PA Sbjct: 2 MKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAE 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQS-----FP 114 V + V AHL IVR L G ++ E EL G E+++ G S+F LQ+ +P Sbjct: 62 VQQPENFVVPAHLFAQIVRNL--GGELV---ELELSGQELSVRSGGSDFKLQTGDIEAYP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 FP+ + L L +A + E + GI + E ++ V Sbjct: 117 PLSFPAQAD------VSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARV--V 168 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+DG+R+A+ D A ++I+P ++V E++R+L KD + + + + + + Sbjct: 169 ASDGYRVAIR--DFPAS-GDGKNLIIPARSVDELIRVL--KDGEARFTYGDGMLTVTTDR 223 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293 + M+++L+DG+FP+Y+ VIP ++ + T L++AV+RV++++ V+ +S Sbjct: 224 VKMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEG 283 Query: 294 KLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSD 339 L + + D G+A ++++V E M + FN +++L+ + I D Sbjct: 284 TLRLAAEG-DYGRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDGD 330 >gi|166366608|ref|YP_001658881.1| DNA polymerase III subunit beta [Microcystis aeruginosa NIES-843] gi|166088981|dbj|BAG03689.1| DNA polymerase III beta subunit [Microcystis aeruginosa NIES-843] Length = 382 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 98/355 (27%), Positives = 180/355 (50%), Gaps = 19/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK T +S++ L R + + T PV +VL A++ G + + A + I + Sbjct: 1 MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPE 115 A V G IT+ A LL DIV +L +G +ENE E +++ + F ++ Sbjct: 61 AEVVEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH---FAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E V E+ + + L E FA + +E + L G+ H+ + L Sbjct: 121 DEFP---ELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGV--HLTKTVDCLE 175 Query: 173 AVATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRI 228 ATDGHRLAV + + V + ++ +P +A+ E+ R++++K + ++ + + +S++ Sbjct: 176 FAATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQV 235 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + ++ R ++G +P Y +IP S D+ L ++ L + ++ V+++S + VK Sbjct: 236 IFEMGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKF 295 Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 SL S D+L + V++PD+G A ESM DI FN KYL++ + + ++++ Sbjct: 296 SLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 350 >gi|116491820|ref|YP_803555.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC 25745] gi|116101970|gb|ABJ67113.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC 25745] Length = 379 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 84/301 (27%), Positives = 150/301 (49%), Gaps = 15/301 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ ++ L R I K TIP+ + ++A + L + S +I I I + Sbjct: 1 MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIEAEEDRLILTGSNTDISIETTISTN 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G++ ++A DIV+KL D + K+ G + I+ G S F + Sbjct: 61 DEEAHLNIESTGAVVLTARFFGDIVKKLPDNTMLLEVKD---GFQTTITSGASEFKINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + FP E + + L + V ++ T A++ +E R L GI F I E KL A Sbjct: 118 DANNFPHLPEVDSQTTITLKADVFSEMINETVIAVSNQESRPILTGIHFTI--EGNKLSA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRL+ +++ I KMP II+P K++ E+ R+L + ++ + +SE++ Sbjct: 176 VATDSHRLSQRVINLPEPI-KMPEDIIIPGKSLLELSRMLDDEIDTITLQISENQALFTF 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + RL++G +P+ +IP + E+ L +++R S++S R VKL+++ Sbjct: 235 DETLFYSRLLEGLYPDTSRLIPKESSTEMEFEAPELLASIERASLLSHAGRNNVVKLTIN 294 Query: 292 S 292 + Sbjct: 295 A 295 >gi|167770839|ref|ZP_02442892.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM 17241] gi|167666879|gb|EDS11009.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM 17241] Length = 367 Score = 117 bits (293), Expect = 3e-24, Method: Compositional matrix adjust. Identities = 85/341 (24%), Positives = 166/341 (48%), Gaps = 7/341 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ ++ +++ + + R + KNT+ VLL+A + L + E+ I+ I A Sbjct: 1 MQLICDKQLLVDAVANVSRAVSSKNTLAALEGVLLRAKNNTLSLTGYDLELAISTEIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I +SA + D++R++ QIS + ++ T V S + + + P SE+P Sbjct: 61 VREAGEIVLSARIFLDMIRRMPS-EQISISSDAKMLTLVKGSM--TEYTILGLPASEYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + LKN++ +T FA+A + + G F I +L C V+ DG+R Sbjct: 118 LPGVSETTELSIPQAALKNMISQTLFAIAVSDSKPVHTGSLFDIKGGEL--CLVSVDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + S IVP K++ E+ ++L ++ V++ ++ I S + R Sbjct: 176 LALRREKVA--FDETLSFIVPGKSLSEVSKLLRDEEGDVELGVARRHIIFRTGSYRIVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GEF +Y+ IP +++ +L A+DR S++ S I++ + L Sbjct: 234 LLEGEFLDYRAAIPEGGATTVKIGTRDLISAIDRASLLISDNIKSPLRMKFEEGLIKISC 293 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +GKA + + + ++I FN +Y+L+ + DE+ Sbjct: 294 STAIGKAYDEIRCEQSGDDVEIGFNSRYMLDALKASEGDEI 334 >gi|209523424|ref|ZP_03271979.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328] gi|209496166|gb|EDZ96466.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328] Length = 393 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 99/409 (24%), Positives = 201/409 (49%), Gaps = 42/409 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 M++ VE+ + L R I + + P+ ++L++A+ L + A + I + P Sbjct: 1 MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINTSFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V G +T+ A LL DIV +L G I E E V ++ + ++ E+ Sbjct: 61 AQVQQGGVLTLPAKLLNDIVSRL-PGGDIQVDDE-ETEAVVTLTSSSGRYQVRGMVAEEY 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E +S +LA+ L ++ T FA + +E + L G+ + ++ LC +TDG Sbjct: 119 PDLPSVEGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFASTDG 176 Query: 179 HRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSS---------------V 219 HRLAV +V+ V +Q + I +P +A+ E+ R++ S +S+ V Sbjct: 177 HRLAVVKVENVRDPNSQEPENLEITIPARALREVERMIVSANSARHSAATEEESTTPPMV 236 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + ++++ + + ++ R ++G +P Y+ +IP ++ V L A++R+ +++ Sbjct: 237 TLGFDDTQVVFELGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLAALERIGVLA 296 Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNI 336 S + VK + + ++ ++V+ D+G A+ESM + E P ++ FN KYL++ + + Sbjct: 297 SQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLKVL 356 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S E+ +L+++++ V I N + Y++MP+++ Sbjct: 357 NS-----SEIQIQLNAASTPVII---------NPFGGLKMTYLVMPIQL 391 >gi|167753684|ref|ZP_02425811.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216] gi|167658309|gb|EDS02439.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216] Length = 374 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 102/389 (26%), Positives = 188/389 (48%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +V S +L LL ++I KNT+P+ + L++ L + S E + G+I Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPESEF 118 V+ G+I A L+ D L++ A++ E N+ E+ +S + + + Sbjct: 61 GVESEGTIAAPAKLMLD---SLKEFAEMPLTIEVNDQNWEIRLSWKSGSLSIPGASAVSY 117 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ L VL N + +T FA A +E+R +NG++ IN L V TD Sbjct: 118 PAIPALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVY--INLAPSMLTFVGTD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 H+L EV+ ++A S I+P+K + +L ++ ++KVS +++ ++ Sbjct: 176 AHKLVKYEVETANEVAS--SFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+G +PNY VIP +N ++ V+ L + RV++ S+ +++ ++ +++ + Sbjct: 234 VCRLIEGNYPNYNAVIPTANPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRINL 293 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 T + D A E+++ Y + I F +L+EI+ NI + + V+ DS+ + Sbjct: 294 TAQDIDFSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPTI----VIELADSTRAG 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VF K ++K + +LMPM I Sbjct: 350 VF-----KPVYDDKQSSA-TLMLLMPMMI 372 >gi|312897427|ref|ZP_07756851.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis F0359] gi|310621488|gb|EFQ05024.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis F0359] Length = 372 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 95/390 (24%), Positives = 191/390 (48%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +++ D L ++ K N + +L++A + +EI+A+ ++ I IP Sbjct: 1 MKLKIQKEDFTRALQSVQKVASNKSNNLSSENGLLIKAINDNIEIQANDYDMGIKTTIPG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G + + L ++ R++ ++ +++ ++++I G + + +F Sbjct: 61 IIEESGEVFLWDPHLSELTRRI--ASEEIILTKSDSDSQMSIEGGKLKYRYMTMNTEDFN 118 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E Y SF S +LK+L++ T +A AT+ R G F ++ + L + VATD Sbjct: 119 EVEVVEQGYASFTTDSVILKDLIDNTSYACATDTSRPVFTGTFLDVSGKSLSM--VATDT 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLS 236 HRLA+ V + I+P + + E+ R L + D V V ++ R +L I+ ++ Sbjct: 177 HRLALKSVTLDQPSTGDIQAIIPGRLLSEVARQLPT-DVPVVVKITAVRNYLAIQFGNVY 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKL 295 + RLI+G FP+Y+ VIP + + ++ AV+R+SI++ + + ++ +++ Sbjct: 236 IRTRLIEGTFPDYKRVIPTEFSNIITIRRSDFTAAVERISIVAKDAQYNVINFDMADNQI 295 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 M +PD G +S+ + P+ I FN +++L+++ + S DE +F N Sbjct: 296 HMNSQDPDHGVVEDSVECIMSGGNPLSISFNGRFILDVLKHCSKDE------IFLKCREN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I+ KD N +V+ PMR Sbjct: 350 SPMLIQDKDTG---------NCVFVVTPMR 370 >gi|267847159|gb|ACY80720.1| chromosomal replication initiation protein [Orientia tsutsugamushi] gi|267847167|gb|ACY80724.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58 I ++ + L I+E+KN + +V L ND + LEI A+ +I I +P Sbjct: 20 IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79 Query: 59 ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 + SIT+ L +IV+K+ D I ++N++ V I G+ F L + P Sbjct: 80 IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKVGEYLEFNLATLPI 136 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173 + FP +E + + + + L ++E T FA++TEE RY LNGI+ H +D K L A Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225 VATDGHRLA A+ +I + + +I+PRK + E+ +I S +V + + Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324 V L L + ++ KA E + Y + + I F Sbjct: 315 VILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAF 374 Query: 325 NYKYLLEII 333 N KYLL+++ Sbjct: 375 NAKYLLDVL 383 >gi|198274685|ref|ZP_03207217.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135] gi|198272132|gb|EDY96401.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135] Length = 405 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 94/345 (27%), Positives = 174/345 (50%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I +N++P+ L + DG L + AS + ++ +I + Sbjct: 32 MKFIVSSTALFSHLQAISRVINSRNSLPILDCFLFELRDGTLFMTASDNDTTLSTSIEVN 91 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ L + ++++ + +SF E E+ + + + + L E+P Sbjct: 92 ESDSDGRFAVSSKTLLEALKEIPE-QPLSFHIEPS-NMEITVEYLNGKYSLMGQNADEYP 149 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + +L N V R+ FA A +E+R +NGI+F I+ ED+ L VA+DG Sbjct: 150 QAQALGSNAVQVTMGAEILMNGVNRSLFATADDELRPVMNGIYFDISTEDITL--VASDG 207 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + A+ A+ + I+P+K + +L + V++ + +E+ M Sbjct: 208 HKLVRCKT-YAARGAEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 266 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ A+ RVS+ SS +KLSLS +++ ++ Sbjct: 267 CRLIEGRYPNYNSVIPQNNPHRAIIDRALFISALRRVSVFSSQSSSLIKLSLSENQMKIS 326 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D A E++ Y PM I F +L++I++NIS+ ++ Sbjct: 327 AQDIDFSTSAEETIACQYGGNPMSIGFKSSFLIDILNNISAQNII 371 >gi|158336234|ref|YP_001517408.1| DNA polymerase III subunit beta [Acaryochloris marina MBIC11017] gi|158306475|gb|ABW28092.1| DNA polymerase III, beta subunit [Acaryochloris marina MBIC11017] Length = 372 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 88/347 (25%), Positives = 174/347 (50%), Gaps = 13/347 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++SD+ L R++ T PV +VLL A L + + I I A Sbjct: 1 MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++T+ A L DIV +L + I ++ T V ++ ++ +Q EFP Sbjct: 61 VEETGALTLPARFLNDIVSRLPN-CDIEVETDD---TAVTLTCDSGHYQMQGLVAEEFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + +L + V ++ T FA +T+E + L G+ H+N + TDGHR Sbjct: 117 LPSLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGL--HLNTSESGFEFATTDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLS-- 236 LA+A + M ++ +P KA+ E+ R+L + D +++ +++ L E + Sbjct: 175 LAIANFPDLVTPEPM-TMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTER 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DK 294 +S RL++G++P Y ++P ++++ V L +V+R++++++ + ++L + S Sbjct: 234 LSCRLLEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQN 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++ + P++G E + + +DI FN KYL + + + S EV Sbjct: 294 VALSAEAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQEV 340 >gi|189184479|ref|YP_001938264.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181250|dbj|BAG41030.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Ikeda] Length = 432 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58 I ++ + L I+E+KN + +V L ND + LEI A+ +I I +P Sbjct: 20 IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79 Query: 59 ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 + SIT+ L +IV+K+ D I ++N++ V I G+ F L + P Sbjct: 80 IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKVGEYLEFNLATLPI 136 Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173 + FP +E + + + + L ++E T FA++TEE RY LNGI+ H +D K L A Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225 VATDGHRLA A+ +I + + +I+PRK + E+ +I S +V + + Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324 V L L + ++ KA E + Y + + I F Sbjct: 315 VILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAF 374 Query: 325 NYKYLLEII 333 N KYLL+++ Sbjct: 375 NAKYLLDVL 383 >gi|329116060|ref|ZP_08244777.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD 2020] gi|326906465|gb|EGE53379.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD 2020] Length = 378 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 177/352 (50%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ RS ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 2 IQFSINRSLFIQALNATKRAISSKNAIPILSTIKIEVNQENITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A+ +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLISSTGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171 ++P +E L + +LK+++ T FA + +E R L G+ + N +D K Sbjct: 118 KDVEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASLQESRPILTGVHITLSNNKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ + + + A +++P K++ E + +V++ S S+I Sbjct: 177 -AVATDSHRMSQRLLSL-EKSANNFDVVIPSKSLREFSSVFGDDIETVEIFFSPSQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL + Sbjct: 235 SEHISFYTRLLEGNYPDTDRLLMNQFETEVVFNTQSLRHAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 +++++ V++P++GK E ++ V + + I FN YL+E + + SD V Sbjct: 295 AANEVTAHVNSPEVGKVNEELDTVEKSGNDLTISFNPTYLIESLKALKSDTV 346 >gi|148241100|ref|YP_001226257.1| DNA polymerase III subunit beta [Synechococcus sp. RCC307] gi|147849410|emb|CAK26904.1| DNA polymerase III beta subunit [Synechococcus sp. RCC307] Length = 379 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 103/393 (26%), Positives = 185/393 (47%), Gaps = 24/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R I + T PV +VL+ A+ I +G ++ I + Sbjct: 1 MKLVCSQAELNGSLQLVSRAIAGRPTHPVLANVLVTADAAAGRISLTGFDLSLGIQTSFA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 A V+ G+IT+ A L DIV +L DG E E TE++ G ++ ++ + Sbjct: 61 AVVESSGAITLPAKLFTDIVSRLPADGPLTLACPEGEEQTELSALTG--SYQMRGLSAED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + L+ + T FA + +E + L GI H+ ED L ATD Sbjct: 119 FPDLPLAQNGQPLLLSGEAFAEGLRSTLFASSGDESKQILTGI--HLKVEDGGLEFAATD 176 Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIES 234 GHRLAV Q A+ ++ VP +++ E+ R+LS++ S +SL ++ Sbjct: 177 GHRLAVRRNGAGGQEGAESFAVTVPARSLRELERLLSARPSEESISLFCDRGQVVFLWAD 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SS 292 ++ R ++G +PNY +IP S + + + A++R+++++ VKL+ +S Sbjct: 237 QVLTSRTLEGTYPNYGQLIPESFARTISLERKPFIAALERIAVLADQHNNVVKLTADPAS 296 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +L ++ D D+G ES+ N + + FN +YLLE + ++ D V L+S Sbjct: 297 GQLQLSADALDVGSGSESLAAQINGEEIAMAFNVRYLLEGLKAMA-----DATVRLNLNS 351 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + ++D + Y++MP++I Sbjct: 352 PTSPAVL-------SADEDGEAGFTYLVMPVQI 377 >gi|297616216|ref|YP_003701375.1| DNA polymerase III subunit beta [Syntrophothermus lipocalidus DSM 12680] gi|297144053|gb|ADI00810.1| DNA polymerase III, beta subunit [Syntrophothermus lipocalidus DSM 12680] Length = 382 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 102/402 (25%), Positives = 187/402 (46%), Gaps = 42/402 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGL------LEIKASGPEIE 52 MK ++ + ++ + R + T+PV +LL+A+ GL LEI S +E Sbjct: 1 MKFSINQPELARVAALVQRAASTRETVPVLSGLLLKASATTGLSMTCTDLEIALSAHTLE 60 Query: 53 ITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A+V G+ V+A D+VR L + +I ++E + + +++G S +L Sbjct: 61 ------ANVIEEGTALVNARYFADLVRYLPN-IEIQVLTDDE-NSRLTVNYGRSQTHLHL 112 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + EFP T +E + LK L+ +T FA A + G+ F + L++ Sbjct: 113 YNPQEFPETGRQEPTPLLSVPQKTLKELLRKTSFAAAVNHFKQVFTGVLFDFTPDQLRV- 171 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VA+D HRLA+ + + + + +++P + V E++RIL + V L+ + I Sbjct: 172 -VASDTHRLAMMSLAMSSTHTEPRQLVIPSRTVAELIRILEDSEKEVSCGLAGNNIVFTC 230 Query: 233 E--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM------SSVRIQ 284 E ++ RL++G++PNY VIP + +++ L A++R +M S I+ Sbjct: 231 EEPGFQLTSRLLEGQYPNYLPVIPGNFVSTVKLEPGPLANALERAVLMPTDKQSSKQPIR 290 Query: 285 AVKLSLSSDKLCMTVDNPDMG---KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 V L L +L ++ + MG + +E ++V E + I FN +YLL++I + + Sbjct: 291 HVTLELKDRELRVSAYSQKMGELQEVLEDISV-EGESNIQISFNTRYLLDVIKVLQGECT 349 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + S S I+ KD + YVL+P+ Sbjct: 350 T---ISLKFTGSLSPALIQDPCKD---------DYLYVLVPL 379 >gi|323345728|ref|ZP_08085951.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis ATCC 33269] gi|323093842|gb|EFZ36420.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis ATCC 33269] Length = 374 Score = 117 bits (292), Expect = 4e-24, Method: Compositional matrix adjust. Identities = 98/345 (28%), Positives = 161/345 (46%), Gaps = 8/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ S + L R+I KN++P+ L + G L I AS E + ++ Sbjct: 1 MRFTLSSSALNGHLQTLARVINSKNSLPILDCFLFEVAGGKLNITASDSENVMRSSVQLD 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS + + D V++L + + L +V +G +F Q E+P Sbjct: 61 ESDTEGSFAIPNRTILDAVKELPEQPLTFDVDTSNLTIKVLYQNGMYSFTAQH--ADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + + S+VL + + R+ FA A +E+R +NGI+F + + L + VA+DG Sbjct: 119 RTQPMPDGATVVTIDSAVLNDNISRSLFATAQDELRPVMNGIYFDLTADSLAI--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + I+P+K + ILS V + E + +S Sbjct: 177 HKL-VRNKNFTIKSDTPAAFILPKKPATLLKNILSKDGGDVVIKFDERNAEIQYAGGILS 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N L ++ L A+ RV +S Q V+ L + KL +T Sbjct: 236 CRLIEGRYPNYNSVIPQNNPNLLTIDRRTLLGALRRVLPFASESSQLVRFHLEAGKLELT 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D A E++ Y M I F L EI+ N+ SDEV Sbjct: 296 SEDVDFATSAKENITCDYTGQTMSIGFKGSSLSEILTNLDSDEVT 340 >gi|229824636|ref|ZP_04450705.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271] gi|229786007|gb|EEP22121.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271] Length = 404 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 21/342 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++ R + L H R I K IPV + L+ L + S I I I S Sbjct: 22 MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V GSI +SA L DIVRKL Q+ ++ V ++ G + F +Q Sbjct: 82 QEAAQLQVTTPGSIVLSARLFIDIVRKLPTN-QVEIQVQDHY--NVQLTSGKAVFTIQGV 138 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 S++P E + L + K L+ +T F+ + +E R L G+ +++ D L Sbjct: 139 DSSQYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGL--NLSFHDGYLTG 196 Query: 174 VATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ I + K +I +P+K V E+ RIL +S+V + ++ + Sbjct: 197 VATDSHRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDD-ESNVTFYVMAQQLVFH 255 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 ++L + RL++G FP+ +IP + + EL VN + QA++R +++ V + V+L + Sbjct: 256 FDNLVIYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKM 315 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMD---ICFNYKYL 329 S + + V +G++ E ++ Y+ D I FN Y+ Sbjct: 316 SQGSVALLVQGISIGQSTEELS--YDSLEGDDLTIAFNPDYM 355 >gi|270289891|ref|ZP_06196117.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4] gi|304385856|ref|ZP_07368200.1| DNA-directed DNA polymerase III beta subunit [Pediococcus acidilactici DSM 20284] gi|270281428|gb|EFA27260.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4] gi|304328360|gb|EFL95582.1| DNA-directed DNA polymerase III beta subunit [Pediococcus acidilactici DSM 20284] Length = 379 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 89/313 (28%), Positives = 154/313 (49%), Gaps = 17/313 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+ R+ ++ L R I K TIP+ + ++A L + S +I I I Sbjct: 1 MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIKAEADQLVLTGSNTDISIETTISVN 60 Query: 59 ---ASVDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 A +D+ G I ++A DIV+KL D + E G + I+ G S F + Sbjct: 61 DPDAELDIEQTGDIVLTARFFSDIVKKLPDNKMLV---EVSDGFQTTITSGASEFKINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + FP E + + L + V ++ T A++ +E R L GI F I E+ KL A Sbjct: 118 DANNFPHLPEVDSQTTITLQADVFSEMINETVIAVSNQESRPILTGIHFTI--ENNKLTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRL+ +++ + KMP II+P K++ E+ R+L + ++ + +SE++ Sbjct: 176 VATDSHRLSQRIINL-PEAVKMPEDIIIPGKSLLELSRMLDEEIDTITLQISENQALFTF 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290 + RL++G +P+ +IP + + L +++R S++S R VKL++ Sbjct: 235 DETLFYTRLLEGLYPDTSRLIPKESTTAMEFEAPELLASIERASLLSHAGRNNVVKLTIN 294 Query: 291 -SSDKLCMTVDNP 302 ++ K +T D+P Sbjct: 295 AAAKKAIITGDSP 307 >gi|313885457|ref|ZP_07819207.1| DNA polymerase III, beta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619187|gb|EFR30626.1| DNA polymerase III, beta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 384 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 86/340 (25%), Positives = 170/340 (50%), Gaps = 17/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55 MK T+ R ++L + R I K TIP+ + ++ N + + S +I I Sbjct: 1 MKFTINRQKFTDVLNNVSRAIPGKTTIPILTGIKIEVNPDGVTLIGSDADISIESFLSNQ 60 Query: 56 --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ ++ GSI V A L DI+RKL E++ + I+ G + F L Sbjct: 61 DESLQLNIKEQGSIVVGARLFNDIIRKLPTN---EILLESDSNYLLTITSGPAVFTLNGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E ++ + L + K ++ T F+ + +E R L G+ I+ + + Sbjct: 118 DGAAYPHLPEIDFENTVSLPTLAFKEMINHTIFSASNQESRPILTGLNLSIHPD--YISG 175 Query: 174 VATDGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ E V++ + + ++ +P+K V E++RI+ D +++ ++E ++ Sbjct: 176 VATDSHRLSRREIPVELNTDLLDLTNVTIPKKTVTELVRIVED-DQKLQMLVNEQQVIFI 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 +E+L++ RL++G +P+ +IP ++ +L VN + A++R S+MS + V+LS+ Sbjct: 235 LENLTIYSRLLEGNYPDTDRLIPSNHQTQLVVNANDFLAAIERASLMSHQSKNNIVQLSI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYL 329 + ++V + G+A E + + + + I FN Y+ Sbjct: 295 KDQAVELSVSGNERGRASEDIQLKAVSGQDLLISFNPDYM 334 >gi|120401030|ref|YP_950859.1| DNA polymerase III subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119953848|gb|ABM10853.1| DNA polymerase III, beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 398 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 98/402 (24%), Positives = 181/402 (45%), Gaps = 34/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R D + + R + + T+PV VLL +D L I E+ IPA Sbjct: 12 LKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTISGFDYEVSAEVQIPAE 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + GS+ VS LL DIVR L + E GT V+++ G + F L + P ++ Sbjct: 72 IASPGSVLVSGRLLSDIVRALP-AKPVDVSVE---GTRVSLTCGSARFSLPTMPVEDYPT 127 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ +E V S S + + + A ++ L GI I+ E K+ ATD Sbjct: 128 LPTLPDETGVVS----SDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATD 181 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIH 229 RLAV E+ A + +++VP K + E + + + V ++L E + Sbjct: 182 RFRLAVRELTWSTGAAGVEAAVLVPAKTLAEAAKA-GTDGNEVHLALGAGPSVGKEGLLG 240 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ Sbjct: 241 IRSKGKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVAD-RGAQVRME 299 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + L ++ D+G+A E + V ++ P+ I FN YL + + ++ + + V F Sbjct: 300 FADGVLRLSAGADDVGRAEEDLPVEFSGDPLTIAFNPTYLTDGLSSLHA-----ERVTFG 354 Query: 350 LDSSNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + +R +D + + + Y+LMP+R+ Sbjct: 355 FTTPSRPAVLRPAAEDDGGAGGSGPFPAAQTDYVYLLMPVRL 396 >gi|81427618|ref|YP_394615.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609257|emb|CAI54304.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei subsp. sakei 23K] Length = 379 Score = 116 bits (291), Expect = 5e-24, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 173/354 (48%), Gaps = 18/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R+ ++ L R I K TIP+ + L + L + S +I I + AS Sbjct: 1 MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ G I + A +IV+KL + Q+ N T I G S F + Sbjct: 61 DEKNQLVVEEVGEIVLPARFFSEIVKKLPED-QMRIAVGNNFQT--TIRSGKSEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E +F +++ VLK L+ +T A++ +E R L G+ H+ + ++ A Sbjct: 118 DANSYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGV--HLVLANGEMLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA ++ + +I+P K++ E+ R L+ V++ ++E+++ Sbjct: 176 VATDSHRLAQRKLPVALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 +L+ RL++G +P+ +IP S+ ++ N L A++R S++S R V+L+L + Sbjct: 236 NLAFYSRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDT 295 Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVV 342 + + ++PD+G E++ + N ++I FN Y+ + + + +V Sbjct: 296 EANTAIIYGNSPDVGNVEEALQ-FENLTGESLEISFNPDYMKDALRSFGQTTIV 348 >gi|298246028|ref|ZP_06969834.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM 44963] gi|297553509|gb|EFH87374.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM 44963] Length = 379 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 169/351 (48%), Gaps = 14/351 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ D+ L + ++T+P+ ++LL + G L++ A+ EI I I A Sbjct: 1 MKIICKQQDLSRGLSTVSHAVSSRSTLPILANILLTTDHGRLKLSATNLEIGINCWIDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS TV A + D+V L+ +Q+ +E T ++I SN ++ SEFP Sbjct: 61 VQEEGSTTVPAKTISDLVSSLRP-SQVELSVADESHT-MSIKGQGSNATIKGMDPSEFPL 118 Query: 121 TKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + L + LK ++E FA A ++ R L G+ H+ + KL A D Sbjct: 119 IPSAEGSETPIALDAHQLKEMIEYVAFAAADDDTRPVLTGV--HVETTNEKLTFAAADAF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMS 238 RLAV + +I++P + + E+ RIL ++ S + V+ + S++ + +++ + Sbjct: 177 RLAVMSAPMPGGDLLADTILIPARTLTELARILPNEGSVQMIVTPNRSQVLFHTDNVDLV 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSD--- 293 RLI+G FPN++ +IP + V AV V+ + S I VK++ S+ Sbjct: 237 SRLIEGTFPNFRGIIPKEHTTRAVVETKEFSAAVKTVTPFARDSSNIARVKVNSGSEDGN 296 Query: 294 ---KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 L + D+G + ++N + +I FN KYL +++ + + EV Sbjct: 297 ETGTLTIEATAEDIGSNVSTINAAVDGPEQEIIFNVKYLSDVLGVVGTPEV 347 >gi|319642216|ref|ZP_07996875.1| DNA polymerase III [Bacteroides sp. 3_1_40A] gi|317386072|gb|EFV66992.1| DNA polymerase III [Bacteroides sp. 3_1_40A] Length = 372 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 97/393 (24%), Positives = 190/393 (48%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+I V ++ +L+ L RII+ KN +P + L ++ G +++ A E G I Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNILPAYDNFLFVIDESGFIQVTAG----EEGGRIST 56 Query: 60 SVD-----VCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSF 113 +VD V S SA L D ++++ + IS +++ E+ + + + F + Sbjct: 57 NVDGKADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEK-----EMVVKYANGKFTMPIE 111 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P ++ +SF L+ + L V + F A +E+R +NG++F I+ E K Sbjct: 112 DGKQYPEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSY 169 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V TDG RLA+ E+ + I+P K + ++ ++V ++ + + + + Sbjct: 170 VGTDGSRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFD 229 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S + R+I+G +PNY+ VIP + K + + +L A+ RVS+ ++ V L Sbjct: 230 SYRLVCRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKS 289 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L +T + D K+ E + + C ++I F +L+E++++I S+++ + D Sbjct: 290 SLLITAHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDI----SISMTDP 345 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++V R +++ + Y+LMPM I Sbjct: 346 SRAAVLSRCDEEER--------SLTYLLMPMSI 370 >gi|260912252|ref|ZP_05918804.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260633686|gb|EEX51824.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 349 Score = 116 bits (291), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 92/322 (28%), Positives = 164/322 (50%), Gaps = 14/322 (4%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGA 85 +P+ + L + DG+L + S E + ++ D G TV + + D R+L D Sbjct: 1 MPILNNFLFEIVDGVLTLTTSDSETTMKASMQLDESDSNGRFTVPSRTILDATRELPD-- 58 Query: 86 QISFFKEN--ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKNLVE 142 Q F N + ++ +G NF Q+ E+P KE S ++ S+VL N + Sbjct: 59 QPLHFDINLETMAVQITYQNGVYNFTAQT--AEEYPRNKELAADAASIQMESAVLLNSIV 116 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 R+ FA +E+R +NGI+F + E+ L + VATDGH+L ++ + K ++ + Sbjct: 117 RSLFATGQDELRPIMNGIYFDLKEDGLAI--VATDGHKLVKSKNTAIRSDVKRSFVLAKK 174 Query: 203 KAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261 A +LR + +KDS+ V+V + ++ + +S RLI+G +PNY++VIP N ++ Sbjct: 175 PA--SLLRNILTKDSTMVEVKFDDRNAEVHFPNGMLSCRLIEGNYPNYESVIPQDNPNQI 232 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPM 320 ++ L + RV +S Q ++L + + ++ ++ D A ESM Y PM Sbjct: 233 TLDRKGLVSVLRRVLPFASESSQLIRLHVEQGLVELSSEDIDFATSAKESMVCDYVGIPM 292 Query: 321 DICFNYKYLLEIIDNISSDEVV 342 +I F L E+++N+ SD+V+ Sbjct: 293 NIGFKGGALGEVLNNLDSDDVM 314 >gi|288554607|ref|YP_003426542.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] gi|288545767|gb|ADC49650.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] Length = 380 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 93/378 (24%), Positives = 184/378 (48%), Gaps = 23/378 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + + + + + + TIP+ + + A+ + + S ++ I IP Sbjct: 1 MQFTIQRDRFVHDVQNVAKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDVSIETFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL G I +++ T I G S F L Sbjct: 61 DAENEIVTIEQEGSIVLQARFFAEIVKKL-PGETIELIVQDQFAT--TIRSGSSVFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F L +LKN++ +T FA++T+E R L G+ ++ E+ +L Sbjct: 118 LDPEEYPRLPQLEEDLLFRLPQDMLKNMIRQTVFAVSTQETRPVLTGV--NLETEEGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ + I ++ ++++P K++ E+ +I+ + + V ++E++I Sbjct: 176 CTATDSHRLAMRKATIERNDEELTFSNVVIPGKSLNELSKIIDDSNELIDVVVTENQILF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL- 288 ++L RL++G++P +N+IP + + Q ++R ++S + + L Sbjct: 236 KFKNLLFFSRLLEGKYPVTKNMIPAQSKTSFTLKTKPFLQTLERALLLSREGKNNVINLK 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + +T P++GK E++ + M I FN K +++ + I S+E+ +V Sbjct: 296 TLDEGLIEITSIQPEVGKVTENIQSEQMQGEDMRISFNGKNIIDALKVIDSEEI---NIV 352 Query: 348 FRLDSSNSSVFIRGKDKD 365 F + S IR D D Sbjct: 353 F--TGAMSPFVIRPTDHD 368 >gi|217077436|ref|YP_002335154.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B] gi|217037291|gb|ACJ75813.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B] Length = 367 Score = 116 bits (290), Expect = 6e-24, Method: Compositional matrix adjust. Identities = 87/345 (25%), Positives = 176/345 (51%), Gaps = 11/345 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 +K+ ++RS++ + + A + + K P+ +L + D L I ++ + + + Sbjct: 2 LKLAIQRSELEKKISVAAQAVGSKTVDPILQCLLFKVEDNSLNIYSTDMQTFVVSKLNVP 61 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-F 118 V+ G V A LL +IV+ + D QI +N ++NI G S+F + ++ E E F Sbjct: 62 EVEGSGQFAVDAKLLEEIVKNV-DNDQIILNYDN---GKLNIKSGKSSFNIATYSEPEKF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS + E FE+ +S+L+ +++R F +TE LNG+++ + + L+L VA+DG Sbjct: 118 PSIELENTGIKFEIETSILQEMIDRVIFCASTESAMRALNGVYWELKDNYLRL--VASDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237 +RLA+ E I + I+ K++ E+ ++ D V ++ ++ +N +++ Sbjct: 176 YRLALVEQKIT--VNSDIDFILSLKSMKELENLIKETDEPVLTINFDHKKLAVNAGDVTV 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +R+++ FP+Y+ V+P + + N +++ R I++ V+L D L + Sbjct: 234 IMRVVEEVFPDYKRVLPKAFKSRIVFNKDQFLESLKRTMIIAKRGTDKVQLKALDDTLEL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + +P+ G+ IE + + + I FN ++L E + I +EVV Sbjct: 294 SSQSPEYGEVIEEIPIEKEGEDITINFNPRFLNEAVKKIEEEEVV 338 >gi|298491074|ref|YP_003721251.1| DNA polymerase IF1 subunit beta ['Nostoc azollae' 0708] gi|298232992|gb|ADI64128.1| DNA polymerase III, beta subunit ['Nostoc azollae' 0708] Length = 382 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 179/357 (50%), Gaps = 23/357 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I Sbjct: 1 MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRSTFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE----LGTEVNISHGDSNFYLQSFP 114 A V G+I + A LL DI +L +G +I+ E+ G V + + +++ Sbjct: 61 AEVIEGGAIALPAKLLVDITSRLPEG-EITLDDESGDNTGEGILVTLKPKSGKYQVRAMG 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP E + +L ++ + ++ + FA + +E + L G+ + ++ L+ A Sbjct: 120 AEEFPELPVIESSEAIQLTTAAVIEGLKGSLFATSADETKQVLTGVHLTVKQDTLEFAA- 178 Query: 175 ATDGHRLAVAE------VDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSES 226 TDGHRLAV E +D Q+ + VP +A+ E+ R+L SS + +V + L Sbjct: 179 -TDGHRLAVLETTNERPIDSNEQL----EVTVPARALRELQRMLAHSSLEETVALYLDPG 233 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ + ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + V Sbjct: 234 QVVFSWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTLERRQFISTLERIAVLADQKNNIV 293 Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 K+S+ ++ ++ ++ + D+G ESM + +DI FN KYL+E + + S E+ Sbjct: 294 KVSIDNANQEITLSCEAQDVGSGTESMPAKISGEDIDIAFNVKYLMEGVKELPSSEI 350 >gi|315644301|ref|ZP_07897471.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453] gi|315280676|gb|EFU43965.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453] Length = 380 Score = 116 bits (290), Expect = 7e-24, Method: Compositional matrix adjust. Identities = 82/354 (23%), Positives = 179/354 (50%), Gaps = 17/354 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI++ ++ + E + H + I + TIP+ + L + + AS +I I IP+ Sbjct: 1 MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPSE 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL K+N + IS G + + Sbjct: 61 DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKDN---FQTFISSGATEIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + + +LKN++++T F+++T E L G+ +++N+ +LK Sbjct: 118 LDPEEFPVLPNIEDSQTVSIPGDLLKNMIKQTVFSISTHETTPILTGVLWNLNDNELKFT 177 Query: 173 AVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A TD HRLA + Q ++++ K + E+ +I+ +++ V + ++++++ Sbjct: 178 A--TDRHRLATRSAQLEGTQDISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289 I+ + R++DG +P+ +IP S+ EL ++ L +++DR ++S + L + Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 + + ++ + ++GK E +++ + P+ I FN KY+L+++ + S++++ Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVESEQLM 349 >gi|172036779|ref|YP_001803280.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142] gi|171698233|gb|ACB51214.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142] Length = 393 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/408 (24%), Positives = 191/408 (46%), Gaps = 40/408 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK +SD+ L R + + T P+ +VL+ A+ + + A + I + Sbjct: 1 MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLVIADSQKNRVSLTAFDLSLGIETSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPE 115 A V G IT+ A LL DIV +L +G +I+ E + V + F +++ Sbjct: 61 ADVSEDGKITLPAKLLNDIVSRLPEG-EITLMAEEAEDNDSQIVALKCASGQFQVRAMDA 119 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E S +L +L ++ FA +++E + L G+ + L+ A Sbjct: 120 EEFPPLPTVEEGESIQLPIIMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEFAA-- 177 Query: 176 TDGHRLAVAEVDIVAQI---------AKMP-----SIIVPRKAVGEILRILSSKDSSVKV 221 TDGHRL+V E + Q ++MP ++ +P +A+ E+ R++ ++ S + Sbjct: 178 TDGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRSESDAI 237 Query: 222 SLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +L E+++ + ++VR +DG +PNYQ +IP + + + L +++RV++++ Sbjct: 238 ALQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVAVLA 297 Query: 280 SVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + VK + + + ++ ++V+ D+G A ESM +I FN KYL++ + + Sbjct: 298 DQKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLKALP 357 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + E+ +L+ N V N + Y++MP++I Sbjct: 358 T-----KEIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391 >gi|218961814|ref|YP_001741589.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus Cloacamonas acidaminovorans] gi|167730471|emb|CAO81383.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus Cloacamonas acidaminovorans] Length = 389 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 99/407 (24%), Positives = 199/407 (48%), Gaps = 42/407 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--P 58 M++ +E+ D+L + H I+ KNT P+ + L++ ++ +++ S ++E+ + P Sbjct: 1 MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G++ VSAH +I+ + DG I+ ++ ++L + I G +F L + F Sbjct: 61 AAVSEGGTVAVSAHHFNEIINYMPDGV-INLWRNDDL---LMIQCGKVDFNLLIADHTLF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + + + ++ +T+FA++T+ R LNG+ + I D + A ATDG Sbjct: 117 PVIPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKI-YPDHHIMA-ATDG 174 Query: 179 HRLAVAEVDIVAQIAKM-------PSI-------------IVPRKAVGEILRILSSKDSS 218 + VAE+ I+ P + ++P K + + +I + + Sbjct: 175 RK--VAEIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKE 232 Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 +KV L +RI +S ++++ +FP+YQ P + ++ L A+ RV+++ Sbjct: 233 LKVGLEHNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALV 292 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNIS 337 + + L SD+ + N D G+A E+M+ + + I FNYKY+L I++ I Sbjct: 293 APDDNLRIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAID 352 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++VV +L +S ++ I + D ++ ++LMP+R Sbjct: 353 T-----EKVVIKLGTSKDAMMIYNETPLP----DQEIT--FLLMPLR 388 >gi|149194733|ref|ZP_01871828.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2] gi|149135156|gb|EDM23637.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2] Length = 350 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 93/343 (27%), Positives = 167/343 (48%), Gaps = 24/343 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I +++ I L+ A E+K+ ++ H+L+ AN+ L IKA+ EI I A Sbjct: 1 MYIKIQKPVIESLINQAMPFTEKKDNTQITSHILIDANENLT-IKATDKEIGIKLTTDAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 + G IT++ L+DI++ L++ KE E+ +E + I S + L SF +E Sbjct: 60 IINPGKITINGKKLFDIIKTLKN-------KEIEIKSENDKITIKQDTSIYNLTSFNANE 112 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + E+ ++ + +++ ++ +Y LNG F I E K V+TD Sbjct: 113 FPEFPNPNDLEKLEVDNNEFFDAIKKIFPSIDNNNPKYELNGALFDIKE---KTNFVSTD 169 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLAV + + IIVP++++ EI RI +K+ + + L E+ Sbjct: 170 TRRLAVYYSNAKGNAKQ---IIVPKRSISEIKRIFKD---DMKIFYDDIYLILKDENTLF 223 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LI+G+FP Y+ +IP S L++ + +VSI+S+ V++ +++DK+ Sbjct: 224 FTKLINGKFPTYEKIIPNSFKYTLKIPKDEFTSYLKQVSIISN----EVRIKITNDKIEF 279 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + KA S N N + N +YL + ++ I+S+E Sbjct: 280 ESISDETTKAKTSFNFNSNIEEFEFAVNSRYLFDFLNIINSNE 322 >gi|220927461|ref|YP_002504370.1| DNA polymerase III subunit beta [Clostridium cellulolyticum H10] gi|219997789|gb|ACL74390.1| DNA polymerase III, beta subunit [Clostridium cellulolyticum H10] Length = 366 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 91/340 (26%), Positives = 173/340 (50%), Gaps = 9/340 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++L + + + K T+P+ +LL A+D ++ + EI I + A Sbjct: 1 MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNADDKF-KLTGNDLEIGIECYVEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I +++ + DIVR+L D + N L V + +S+F ++ S +PS Sbjct: 60 IRSTGCIVINSKIFGDIVRRLPDSEVLIEVTGNNL---VIVECENSHFEIKGINPSGYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E EL S LK+++ +T FA+ ++E R L G + +D +L V+ DG R Sbjct: 117 LPVVEKENILELTQSDLKDMIRQTVFAVGSDENRPVLTGSLIEV--KDKELVIVSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ I S+IVP K + EI +IL D V V S +++ + +S + R Sbjct: 175 LALRRKNLENDINDF-SVIVPGKTLNEISKILQPTDEEVSVYSSNNQVVFDAKSWRIVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LI+G+F NY +++ + ++ +N + +++R S++S + + VKL + +DK+ +T Sbjct: 234 LIEGKFLNYNSLLNKDFETKVIINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIIIT- 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 N D+G E + ++I +N +L++ + I + Sbjct: 293 SNADLGNVREEVKAEIEGNALEIGYNPAFLIDALKAIDEE 332 >gi|294496877|ref|YP_003560577.1| DNA polymerase III subunit beta [Bacillus megaterium QM B1551] gi|295702244|ref|YP_003595319.1| DNA polymerase III subunit beta [Bacillus megaterium DSM 319] gi|294346814|gb|ADE67143.1| DNA polymerase III, beta subunit [Bacillus megaterium QM B1551] gi|294799903|gb|ADF36969.1| DNA polymerase III, beta subunit [Bacillus megaterium DSM 319] Length = 378 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 174/359 (48%), Gaps = 30/359 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ +++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MKFIIQKDYLVQSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPNE 60 Query: 61 ------VDV--CGSITVSAHLLYDIVRKLQDG-----AQISFFKENELGTEVNISHGDSN 107 VD+ GS+ + A +IV+KL Q F I G + Sbjct: 61 EEGKEIVDIQKPGSVVLPARFFSEIVKKLPKDIVELDVQSHFL--------TIIRSGKAE 112 Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F L E+P + E F L + +LKN++ +T FA++T E R L G+ + ++ + Sbjct: 113 FNLNGLDAEEYPHLPQIEENNMFRLPTDLLKNMIRQTVFAVSTSETRPILTGVNWKVDGK 172 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 +L +ATD HRLA+ + I ++++P K++ E +IL V + ++E++ Sbjct: 173 EL--TCIATDSHRLALRKATIETGNEATYNVVIPGKSLSEFSKILDDSHELVDIVITENQ 230 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + + L RL+DG +P+ +IP + ++ +N Q++DR S+++ R V Sbjct: 231 VLFKTKHLLFFSRLLDGNYPDTSRLIPADSKTDVILNVKEFLQSIDRASLLAREGRNNVV 290 Query: 287 KLSLSSDKLC-MTVDNPDMGKAIE---SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 KLS + + ++ ++P++GK IE S ++ E + I F+ KY+L+ + + ++ Sbjct: 291 KLSTLDEGIVEISSNSPEIGKVIEEVQSQSISGEE--LKISFSAKYMLDALKALEGTDI 347 >gi|160914814|ref|ZP_02077028.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991] gi|158433354|gb|EDP11643.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991] Length = 372 Score = 115 bits (289), Expect = 8e-24, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 15/340 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + L A R I + +P + + A + + + S ++ I + Sbjct: 1 MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60 Query: 61 VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 D GSI + A + +IVRK D I F E G+ IS + F + Sbjct: 61 EDCVLEIKEMGSIVIEAKYILEIVRK-TDADIIEF--EMIDGSLTKISGNSAEFRINGMK 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E+P+ + SF+LA VLK ++ +T FA + +E R L G+ FH E +L V Sbjct: 118 AIEYPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHC--EGNELHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA V++ ++ ++ +P K++ E+L+ L ++ V++++++ + I Sbjct: 176 ATDSYRLARKTVELEEELNF--NVTIPSKSLQEVLKTLEGENE-VEIAVNDKKAQFIIGD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K SLS + Sbjct: 233 TIVQTRLIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEII 333 ++ + ++G + E + + + P++I N +Y+ E I Sbjct: 293 CVLSSKSIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAI 332 >gi|293374956|ref|ZP_06621252.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909] gi|325844316|ref|ZP_08168092.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1] gi|292646433|gb|EFF64447.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909] gi|325489183|gb|EGC91565.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1] Length = 378 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 163/325 (50%), Gaps = 19/325 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V+R +L L + + I K +PV + +D L + S +I I +P Sbjct: 1 MKIKVDRQLLLTQLSYISKAIPTKTPLPVLTGIKFVVSDEGLYLTTSDSDITINTFLPLE 60 Query: 61 V--------DVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQ 111 V D GSI + +I++KL D +IS F+ G V I G S + L Sbjct: 61 VNDTQVIQIDAVGSIIIPGKYFIEIIKKLNGDTIEISTFE----GNYVTIKCGRSEYTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 F +++P+ + + + +LK ++ +T F+ A E R L G+ F + ++L + Sbjct: 117 GFDVTQYPNIELIKNDDPIHMEKQLLKTIIRQTVFSTANSENRPVLTGVNFRYDADEL-M 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 C VATD RL+ V + ++ +I++P +++ E+ +IL +SV + L+ ++I Sbjct: 176 C-VATDSFRLSKKTVPL-NKLHDSFNIVIPGRSLIELSKILDDSHNSVDIYLANNQILFQ 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSL 290 I ++S RL+DG +P + +P + E++ N L A DR ++++ ++ VKL++ Sbjct: 234 IGNISFQSRLLDGIYPETKEFVPTTFGIEIKANYHELLNAFDRAALIARDQVSNVVKLNI 293 Query: 291 --SSDKLCMTVDNPDMGKAIESMNV 313 KL +T +P++GK E + V Sbjct: 294 LPEESKLLITAQSPEVGKVEEEVQV 318 >gi|186680583|ref|YP_001863779.1| DNA polymerase III subunit beta [Nostoc punctiforme PCC 73102] gi|186463035|gb|ACC78836.1| DNA polymerase III, beta subunit [Nostoc punctiforme PCC 73102] Length = 387 Score = 115 bits (289), Expect = 9e-24, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 174/358 (48%), Gaps = 20/358 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--------GTEVNISHGDSNFYL 110 A V G+I + A LL DI +L +G +I+ E+ L G V ++ ++ + Sbjct: 61 AEVWQGGAIALPAKLLVDITSRLPEG-EITLDDESALTGATSSGEGLIVTLTPKSGHYQV 119 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 ++ EFP E L ++ L + + FA + +E + L G+ + ++ L+ Sbjct: 120 RAMGPEEFPELPVIENTEVIYLTTAALVEGLRGSLFATSGDETKQVLTGVHLTVKQDTLE 179 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILS---SKDSSVKVSLSE 225 A TDGHRLAV E + + VP +A+ E+ R+L+ S D V + + Sbjct: 180 FAA--TDGHRLAVVETSNERPLGGTSQLEVTVPARALRELQRMLAHSASSDEPVALYFDQ 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + Sbjct: 238 GQVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFVSTLERIAVLADQKNNI 297 Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 VKLS+ S ++ ++ + D+G ESM + ++I FN KYL+E + + S E+ Sbjct: 298 VKLSIDSKAQEITLSCEAQDVGSGRESMPAQISGENIEIAFNIKYLMEGLKELPSSEI 355 >gi|229551103|ref|ZP_04439828.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|258538193|ref|YP_003172692.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus Lc 705] gi|229315564|gb|EEN81537.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|257149869|emb|CAR88841.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus Lc 705] Length = 379 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 166/342 (48%), Gaps = 20/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A+ Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F ++ Sbjct: 61 DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + VL+ L+ +T A++T+E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + A II+P K++ E+ R+L + +++ ++E+++ Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++ SS + + L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP---MDICFNYKYL 329 K + ++PD+G E ++ +N+ ++I FN Y+ Sbjct: 296 GEQKATIYGNSPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 335 >gi|309774991|ref|ZP_07670007.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308917245|gb|EFP62969.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 372 Score = 115 bits (289), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 99/391 (25%), Positives = 179/391 (45%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V + + L A R I + +P + + A + L + S ++ I + S Sbjct: 1 MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60 Query: 61 VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK+ D +I F E G+ IS + F + Sbjct: 61 EECVLEIRDMGSIVIEAKYILEIVRKI-DAEEIEF--EMIDGSLTKISGNTAEFRINGMR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P+ + F L LK ++ +T FA + +E R L G+ FH E L V Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHC--EGNTLHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA +DI A +I +P K++ E+++ L + V++++++ + I Sbjct: 176 ATDSYRLAKKTIDIAE--ALNFNITIPAKSLSEVVKTLEG-EGEVEIAVNDKKAQFIIHD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K SLS + Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + ++G + E + + ++ ++I N +Y+ + I +S V FRL Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFHGNSLEISCNGRYVFDAIKALSG-----SLVTFRLCGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ D D N +++P+R Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369 >gi|257783817|ref|YP_003179034.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469] gi|257472324|gb|ACV50443.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469] Length = 366 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 190/389 (48%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + L + I T+P+ + L+A +G+LE+++S I I I A+ Sbjct: 1 MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIAAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQSFPESEF 118 V+ G VS ++ +IV+ L D A I+F G E +S S+F L + ++ Sbjct: 61 VEEEGETVVSGKVIQNIVKNLPDAA-ITF-----EGGERTLSVICQRSSFRLNTLSAHDW 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + EL S +L +V++ + + E R L GI + + ++L VATD Sbjct: 115 AQFPEFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRL--VATDS 172 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV + + + SII+ + ++L + S + V + +++++ + + Sbjct: 173 FRLAVCDSNTDTPAGESFSIIISGEVFHDVLSMRSMTE-KVLIGTTDNQVIFQFGNTTHI 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLC 296 R I+G FP+Y+ ++P S + +N + A+ RVS+++ +V+ + +D ++ Sbjct: 232 SRKIEGHFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIALAN-PSVRFDVDADGKEVK 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ +PD G++ E + + I NY Y+ + ++ S +++ RL+ Sbjct: 291 LSASSPDQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSKDLL------RLE----- 339 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++G + + + KVN Y+LMP+R+ Sbjct: 340 --LQGPSQPAIFKSNGKVNYLYLLMPVRL 366 >gi|289807836|ref|ZP_06538465.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 147 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 3/142 (2%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV + + Sbjct: 7 FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVCSMPLE 64 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 A + S+IVPRK V E++R+L ++ ++V + + I ++ + +L+DG FP+Y Sbjct: 65 ASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY 123 Query: 250 QNVIPCSNDKELRVNCTNLRQA 271 + V+P + DK L C L+QA Sbjct: 124 RRVLPKNPDKHLEAGCDILKQA 145 >gi|159898038|ref|YP_001544285.1| DNA polymerase III subunit beta [Herpetosiphon aurantiacus ATCC 23779] gi|159891077|gb|ABX04157.1| DNA polymerase III, beta subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 381 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 94/394 (23%), Positives = 183/394 (46%), Gaps = 46/394 (11%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L L GHA + ++++PV ++LL G L++ + EI IT + A VD G+IT+ Sbjct: 14 LALAGHA---VAGRSSLPVLANILLATESGRLKLAGNNLEIGITALVGAKVDEDGAITIP 70 Query: 71 AHLLYDIVRKL-QDGAQISFFKENEL------GTEVNISHGDSNFYLQSFPESEFPSTKE 123 A LL D+V L D ++ + GT+ NI D++ FP P Sbjct: 71 AKLLSDLVGNLPNDTVELEVDPRTQTLTVTCRGTKANIKGIDAD----EFPAMAVPG--- 123 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V ++ L +L+ +V + A A E L G+ ++ A+ DG+RL Sbjct: 124 NEPVLAY-LPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATFAAI--DGYRL 180 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSV 239 AV +++ A +++P +A+ E+ R L ++ + +S++ ++ + +++ Sbjct: 181 AVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTVDFVS 240 Query: 240 RLIDGEFPNYQNVIPCSNDKELR--VNCTNLRQAVDRVSIMSSVRIQAVKLSL------S 291 R+IDG+FP+Y+ +P +++ R ++ +AV R+++ S V L++ Sbjct: 241 RVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERGDGSE 300 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L + + ++G+++E+++ + + N +YL E + I + D+V Sbjct: 301 PGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDT-----DQVALETQ 355 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + NS R D +++MPMRI Sbjct: 356 TPNSPGVFRPIGGDEY---------LHLVMPMRI 380 >gi|328954616|ref|YP_004371949.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2] gi|328454940|gb|AEB06134.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2] Length = 367 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/388 (25%), Positives = 185/388 (47%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV ++ + E L + + +T+P+ VL+ A DG+LE + S I I I A Sbjct: 1 MEFTVSQNALSEALAIVSKGVASASTLPILSGVLITAGDGVLEFQTSNYTISIRHRIAAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ V L +I + L D A + F + +VNI+ S F L + ++FP Sbjct: 61 VEKDGSLVVPCKTLSNITKTLPD-APVRF---QLVERQVNITCEKSTFRLNTLDAADFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EL S L ++V R +T++ R L G+ + ++L VATD R Sbjct: 117 FPTYALESAVELPSRTLTDMVARVWRVTSTDKARPILGGVHMTVENNTIRL--VATDSFR 174 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + + + + VP A + L I+S + ++ V +++++ + Sbjct: 175 LAVCDTQVETSSLEGSFELNVPADAFNDALTIMSEQQ-TILVGATDTQVVFEAGDTTYVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LCM 297 R I+G +PNY +IP S ++++ + A+ RVS ++S AVK ++ ++ L + Sbjct: 234 RRIEGVYPNYNQLIPDSCTTSVKIDVEAITAALKRVSAIASTN-PAVKFAIDVERGSLAL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D A E ++V I FNY Y+ ++ ++ ++ + E+ + + + V Sbjct: 293 SAISSDQDLAQEIIDVEAEGESGVIAFNYHYIFGCLNVLAKEQEISLEL---KNYTQAGV 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F K+N Y++MP+RI Sbjct: 350 F----------KSYGKINYLYLVMPVRI 367 >gi|199598233|ref|ZP_03211654.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus HN001] gi|199590836|gb|EDY98921.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus HN001] Length = 379 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 166/342 (48%), Gaps = 20/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A+ Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F ++ Sbjct: 61 DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + VL+ L+ +T A++T+E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADEALTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + A II+P K++ E+ R+L + +++ ++E+++ Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++ SS + + L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP---MDICFNYKYL 329 K + ++PD+G E ++ +N+ ++I FN Y+ Sbjct: 296 GEQKATIYGNSPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 335 >gi|284051274|ref|ZP_06381484.1| DNA polymerase III subunit beta [Arthrospira platensis str. Paraca] gi|291566285|dbj|BAI88557.1| DNA polymerase III beta subunit [Arthrospira platensis NIES-39] Length = 393 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 97/411 (23%), Positives = 202/411 (49%), Gaps = 46/411 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 M++ VE+ + L R I + + P+ ++L++A+ L + A + I + P Sbjct: 1 MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINASFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPES 116 A V G +T+ A LL DIV +L G + N+ TE V ++ + ++ Sbjct: 61 AQVQQGGVLTLPAKLLNDIVSRLPGGD----IEVNDEDTEAVVTLTSSSGRYQVRGMVAE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P + +S +LA+ L ++ T FA + +E + L G+ + ++ LC +T Sbjct: 117 EYPELPSVQGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFAST 174 Query: 177 DGHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSS-------------- 218 DGHRLAV +V+ V ++ + I +P +A+ E+ R++ S +S Sbjct: 175 DGHRLAVVKVENVRDPNSEEQEDLEITIPARALREVERMIVSANSGRHSTATEEEATTPL 234 Query: 219 -VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 V + ++++ ++ + ++ R ++G +P Y+ +IP ++ V L A++R+ + Sbjct: 235 MVTLGFDDTQVVFDVGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLGALERIGV 294 Query: 278 MSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIID 334 ++S + VK + + ++ ++V+ D+G A+ESM E P ++ FN KYL++ + Sbjct: 295 LASQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLK 354 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++S E+ +L+++++ V I N + Y++MP+++ Sbjct: 355 VLNS-----SEIQIQLNAASTPVII---------NPLGGLKMTYLVMPIQL 391 >gi|294786218|ref|ZP_06751472.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305] gi|315225748|ref|ZP_07867536.1| DNA-directed DNA polymerase III beta subunit [Parascardovia denticolens DSM 10105] gi|294485051|gb|EFG32685.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305] gi|315119880|gb|EFT83012.1| DNA-directed DNA polymerase III beta subunit [Parascardovia denticolens DSM 10105] Length = 374 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 180/391 (46%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+ + E + RII + P+ V L+A DG L++ A E+ I A Sbjct: 1 MKVEVDSAAFSEAVSWTTRIIPTRPATPILAGVKLEAADGTLQLSAFNYEVSARNHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L G + G +V I+ G S F LQ PES++P Sbjct: 61 VDESGTVVVQGKLLADIAKSLPAGK----IYLSTSGAKVTIAAGKSTFSLQLMPESDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + + A++ EE R L G+ + + +++ ATD R Sbjct: 117 LPSVPAILG-SIDGDTFSHAISQATVAISREETRPVLTGVKMVFSGDKVQMT--ATDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL-----SESRIHLNIES 234 L+ + A + + ++ R G ++R + S D+S V + S + + + Sbjct: 174 LSRSTFTWSPSAADLETELLVR---GSLMRDVARSLDASQNVVIGFDPESPTLVSFDNAG 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP+ + + VN T+L A+ RVS+++ R +++S + Sbjct: 231 KVSTAQLIDGEFPSVDRLFASDYPIHVVVNKTDLIDAIRRVSLVAE-RNAPIRMSFEGKE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ + D +A E++ + + P+ I FN YLLE + I + V ++ + Sbjct: 290 LTLSAGSSDESQAQETLPIDMDGEPITIAFNPSYLLEGLGAI-----YEPYVRMKMVAPT 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V G+ + + D ++ Y+L+P+R Sbjct: 345 KAVEFNGQQ---EQDGDESLDYRYLLVPVRF 372 >gi|313900815|ref|ZP_07834305.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2] gi|312954235|gb|EFR35913.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2] Length = 372 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V + + L A R I + +P + + A + L + S ++ I + S Sbjct: 1 MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60 Query: 61 VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK+ D +I F E G+ IS + F + Sbjct: 61 EECVLEIRDMGSIVIEAKYILEIVRKI-DADEIEF--EMIDGSLTKISGNTAEFRINGMR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P+ + F L LK ++ +T FA + +E R L G+ FH E L V Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHC--EGNTLHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA +DI + +I +P K++ E+++ L + V++++++ + I Sbjct: 176 ATDSYRLAKKTIDISESLNF--NITIPAKSLSEVVKTLEG-EGEVEIAVNDKKAQFIIHD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K SLS + Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + ++G + E + + + ++I N +Y+ + I +S V FRL Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFTGSSLEISCNGRYVFDAIKALSG-----SLVTFRLCGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ D D N +++P+R Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369 >gi|229017981|ref|ZP_04174857.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] gi|229024202|ref|ZP_04180665.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|228737094|gb|EEL87626.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|228743250|gb|EEL93374.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] Length = 376 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 102/396 (25%), Positives = 181/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I KN IP+ + + AN + + AS I I IP+S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKNLIPILSGIKITANPSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEGVQITTIVKAGSIVVPAKYFIEIIKKMPSDILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F +EFP+ + ++ + L + ++T FA A E R L G+ F I+ L +C Sbjct: 117 FSANEFPNVPFIDEHAEIQVETEQLIEVFKQTVFAAAKNESRPVLTGVHFVIDHNKL-IC 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A ATD HRLA+ E+ I + AK+ + IVP + E+L++++S + V + LSES I Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKQILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + N +GK E+ + E ++I F+ +Y+++ + I +D V Sbjct: 293 DESTIQISSNASQIGKISETQQIDTILGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPIVIEAGEQSA---------AVYLISPVR 374 >gi|164686445|ref|ZP_02210473.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM 16795] gi|164604456|gb|EDQ97921.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM 16795] Length = 371 Score = 115 bits (288), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 99/347 (28%), Positives = 178/347 (51%), Gaps = 16/347 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + +G + I K T+ + VL+ + +K EI I +PA Sbjct: 1 MKIICNQKLLANKIGIVQKAINSKTTLDLLKGVLIVTKQDEIILKGYDLEIGIESHVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSI +++ L DI+RKL D SF + E + V I+ +S F ++ E+P Sbjct: 61 VIQEGSIVINSKLFGDIIRKLPD----SFVEIETDEDNNVYINCLNSKFKIKGDSAKEYP 116 Query: 120 STKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + E+ +YS + VLK+++++T FA + ++ + L G I ++ L VA D Sbjct: 117 QIPDVNEDKLYS--IPQDVLKSMIKQTVFATSQDQTKPILMGELLEIENGNINL--VAID 172 Query: 178 GHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 G+R AV +VD + II+P K + ++ +LSS++ VKV +E I Sbjct: 173 GYRFAVRSCQVDNLIHEDLKAKIIIPGKTLIDVNSLLSSEE-EVKVGFNEKNAIFIINDT 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK 294 + RL++GEF +Y+ + P + ++++ +L +++R S++S S + +KLS+ Sbjct: 232 KIVTRLLEGEFIDYKKLCPREYNSKIKLKTKDLLNSIERASLLSQSEQNNLIKLSIRDSM 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +T +N + G E +++ +DI FN +YLLE + NI +E+ Sbjct: 292 MAITSNN-EKGNVYEEVSLSLEGDYLDIAFNSRYLLEGLKNIDCEEI 337 >gi|256848505|ref|ZP_05553947.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714772|gb|EEU29751.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 378 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/340 (25%), Positives = 161/340 (47%), Gaps = 17/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L + R I K TIP+ V + D + + S +I I + A Sbjct: 1 MKFTINRSVFANQLNNVLRAISSKTTIPILTGVKIVVEDQQVILTGSNADITIQTTLSAE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ G+I + A +I++KL D E G + IS G + F + Sbjct: 61 NGKTALTIEEPGAIVLPARFFSEIIKKLPDQ---DVTIEVHDGFQAKISSGTAEFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + +L+++VE+T A++ +E R L GI H+ D +L A Sbjct: 118 DANNYPHLPEIQSASTITAVADLLRDVVEQTRIAVSKQESRPILTGI--HMRLADDQLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA +V + + +++P ++ E+ R+++ +++ ++E+++ + Sbjct: 176 VATDSHRLAQRKVTVPTN-GQSYDVVIPGNSMTELARMIADVKGDIQIQIAENQVLFQFD 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 + RL++G +P +IP + D + + N A+DR S++S VKLSL Sbjct: 235 NALFYSRLLEGMYPETSRLIPDTADTTIELEAGNFLAAIDRASLLSHQGHNNVVKLSLDP 294 Query: 293 DKLCMTV--DNPDMGKAIESMNV-YYNECPMDICFNYKYL 329 D + D+ D+G E ++ ++I FN Y+ Sbjct: 295 DTNTAKISGDSADVGNVEEDVSFEKLTGNKLEISFNPDYM 334 >gi|289642467|ref|ZP_06474612.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca glomerata] gi|289507726|gb|EFD28680.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca glomerata] Length = 385 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 175/399 (43%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER D + + R + + T + V ++L A L + A E+ + Sbjct: 1 MKFRVERDDFTDAVAWTARTLPTRATSQLQVLAGLMLDATGPSLSVAAFDYEVAAQSGVD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+++ G VS LL +I R L A + + + G V ++ G++ F L + ++ Sbjct: 61 ATIEQEGRALVSGKLLAEITRALPS-APVDLYTD---GARVVLTCGNARFTLPTMSVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ V + + + V + A ++ L G+ I+ + L L A TD Sbjct: 117 PALPPMPAV-TGHIEGAAFAGAVSQVAVAAGKDDTLPVLTGVRVEIDGDVLTLAA--TDR 173 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV ++ + +VP + + E + LS V +SL E+ Sbjct: 174 YRLAVRKLRWRPASETADGVAMVPARTLSETAKSLSGSGVEVAISLGSGPSGEALAGFAG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+DG FP YQ ++P S+ +V +AV RV+++++ R V+LS S Sbjct: 234 GGRQTTTRLVDGSFPPYQRLLPDSSPLTAQVEIAPFAEAVKRVALVAA-RTAPVQLSFSD 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV------VDDEV 346 D+L + +A E++ + Y+ + I FN YLL+ + + SD V DD Sbjct: 293 DQLVLEAGAGGEAQAQETLTIGYDGPSLSIAFNPSYLLDGLGALESDVVHVGFASADDPD 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++S + GK D D + Y+LMP+R+ Sbjct: 353 ----EASKKPAILTGKAPDDGEVPDYR----YLLMPIRL 383 >gi|320332620|ref|YP_004169331.1| DNA polymerase III subunit beta [Deinococcus maricopensis DSM 21211] gi|319753909|gb|ADV65666.1| DNA polymerase III, beta subunit [Deinococcus maricopensis DSM 21211] Length = 360 Score = 115 bits (287), Expect = 1e-23, Method: Compositional matrix adjust. Identities = 87/339 (25%), Positives = 172/339 (50%), Gaps = 16/339 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + + E +G RII +N+ P+ + + A + L + + EI+++ + A Sbjct: 1 MRAQVSKKALNEGVGMLERIIPARNSNPLLTALKVDATERGLTLSGTNLEIDLSCFVAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ + V AHL IVR L G ++ + + G E+ + G S F LQ+ S +P Sbjct: 61 VNEQAAFVVPAHLFAQIVRNL--GGELVELEHS--GNELAVRAGGSEFKLQTGDLSAYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++V + L ++ L + +A + E + GI ++ +A+DG R Sbjct: 117 LSFPDHVDT-TLDAAELAKALSSVRYAASNEAFQAVFRGIKLEYRGGQARV--IASDGFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + A ++I+P ++ E++R+L +D V+++ E + + + + M+V+ Sbjct: 174 LALRDF---AAHGDGQNLILPARSADELVRVL--RDGEVRLAYGEGALGVTTDRVRMNVK 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299 L+DG+FP+Y+ VIP ++R+ L++AV RV++++ V+ +S L + Sbjct: 229 LMDGDFPDYERVIPRDIKLQVRLQAAALKEAVSRVAVLADKNANNRVEFLVSEGTLRLAT 288 Query: 300 DNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNI 336 + D G+A +++ V +E M + FN KY+L+ + I Sbjct: 289 EG-DYGRAQDTLTVEQAGDEPAMSLGFNAKYVLDALGPI 326 >gi|17229502|ref|NP_486050.1| DNA polymerase III subunit beta [Nostoc sp. PCC 7120] gi|17131100|dbj|BAB73709.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120] Length = 387 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 176/358 (49%), Gaps = 20/358 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQ 111 A V G+I + A LL DI +L +G +I+ E+ G V+++ + L+ Sbjct: 61 ADVWQSGAIALPAKLLVDITSRLPEG-EITLDDESATDGTATGEGLIVSLTPKTGKYQLR 119 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 + EFP E + L ++ L + + FA + +E + L G+ + ++ L+ Sbjct: 120 AMGAGEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQDTLEF 179 Query: 172 CAVATDGHRLAVAEVDIVAQIA---KMPSIIVPRKAVGEILRILSSKDSS---VKVSLSE 225 A TDGHRLAV E + + + VP +A+ E+ R+L+ +S + + L + Sbjct: 180 AA--TDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQ 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + Sbjct: 238 GQVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNI 297 Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 VKL++ S +L ++ + +MG ESMN ++I FN KYL+E + + S E+ Sbjct: 298 VKLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPSPEI 355 >gi|123965235|ref|YP_001010316.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9515] gi|123199601|gb|ABM71209.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9515] Length = 385 Score = 115 bits (287), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 96/383 (25%), Positives = 193/383 (50%), Gaps = 32/383 (8%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIPASVDVCGSITVSAHLLY 75 + + + T P+ ++LL A+ G +I +G ++ I + A+V G+IT+ + LL Sbjct: 18 SKAVSSRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFDATVKKSGAITIPSKLLA 77 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135 +IV KL +S ++ + I +F ++ P ++P+ E S + S Sbjct: 78 EIVNKLPSETPVSL-DVDDSSDNILIKSDRGSFNIKGIPSDDYPNLPFVESGTSLNIDPS 136 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI---VAQI 192 ++ T FA ++++ + L G+ F N + L+ + ATDGHRLAV VD ++ Sbjct: 137 SFLKALKLTIFASSSDDSKQLLTGVNFTFNLKFLE--SAATDGHRLAVVLVDKKENFDEV 194 Query: 193 AKMPS------IIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 A + S + +P +++ EI +++S + ++S+K+ + ++ + ++ R ++G Sbjct: 195 ADLSSNEDNLSVTIPTRSLREIEKLVSLRTSENSIKLFYDKGQVVFISSNQIITTRTLEG 254 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM-TVDNPD 303 +PNY +IP K N L +++R+++++ + VK+ L L + + D D Sbjct: 255 SYPNYSQLIPDDFSKLFTFNTKILIDSLERIAVLADQQSSVVKIKLEEKGLALISADAQD 314 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +G A E + V Y+ DI FN +YLLE + ISS + V+F+ + S + + +D Sbjct: 315 IGNASEIVPVSYDFDQFDIAFNVRYLLEGLKVISS-----ENVLFKCNLSTTPAVLVPED 369 Query: 364 KDSKNNKDNKVNAF-YVLMPMRI 385 +++F Y++MP+++ Sbjct: 370 ---------NISSFTYLVMPVQV 383 >gi|330937299|gb|EGH41307.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 183 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 12/187 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAV 183 DGHRLA+ Sbjct: 173 DGHRLAM 179 >gi|295694689|ref|YP_003587927.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912] gi|295410291|gb|ADG04783.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912] Length = 375 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 173/352 (49%), Gaps = 13/352 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+I V + + L R + +T+P+ + L A+ L + A+ EI + + A Sbjct: 1 MRIHVHQQSLAAALQQVQRAVSAHSTMPILGGIKLTADTDSLRLIATNQEIAVETYLAAD 60 Query: 60 ----SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 S+++ GSI + A ++VRKL D + + V I+ + F L F Sbjct: 61 SDTLSIEMPGSIVLPARYFVELVRKLPD-PWVHLTVQQPYS--VQITSAQAAFLLHGFDP 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP + F + S LK+ + +T A+A EE R L G+ + + + + Sbjct: 118 EEFPRLPQIASDQPFLIHSDNLKDAIRQTVVAIAAEETRPVLTGLCMKFDADSITF--IG 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA ++ + I +VP K++ E+ R+L D+ V ++++++ + ++ ++ Sbjct: 176 TDSHRLASRKLFLQGGPEGASEIAVVPGKSIHELARLLPEDDTPVTMTIADNTLLVSSDT 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293 RL++G++P+ +IP + + + A++R +++ ++ Q V+L L SD Sbjct: 236 TRFFTRLLEGQYPDTSKIIPTTFKTRIHIRRDPFASALERALLIAREMQNQVVRLQLQSD 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 ++ ++ + D+G+ E + + ++ + + FN KY+L+ + + +++ D Sbjct: 296 RIELSAHSHDVGRVSEQVPLDQFSGDALTLAFNGKYMLDAVRSFDGEQLTVD 347 >gi|330902070|gb|EGH33365.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] Length = 181 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 12/187 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I ++ +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DGHRLAV 183 DGHRLA+ Sbjct: 173 DGHRLAM 179 >gi|221632726|ref|YP_002521947.1| DNA polymerase III subunit beta [Thermomicrobium roseum DSM 5159] gi|221156728|gb|ACM05855.1| DNA polymerase III, beta subunit [Thermomicrobium roseum DSM 5159] Length = 380 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 159/351 (45%), Gaps = 14/351 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +S++ L R + R++T+PV +VLL A++ L I A+ EI ++ + PA Sbjct: 1 MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ++V A + + + L Q ++ ++ G S + P +FPS Sbjct: 61 VTDPGQLSVRADVFTEFIGSLPK--QDVILSGTTGSNDLRVTCGTSKARIPGIPAEDFPS 118 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L+ + + FA AT++ R L G+ +L L A DG Sbjct: 119 LPRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTLAAA--DGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237 RL+V + + A +IIVP +A+GE+ R+L + +V++ ++ +R L S L Sbjct: 177 RLSVRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEF 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL-------SL 290 RLIDG FP ++ +IP + V+ + A R I + + VKL L Sbjct: 237 LSRLIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSEL 296 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 L ++ D G + + + I FN +YL +++ + E+ Sbjct: 297 DPGSLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKATEI 347 >gi|256374162|ref|YP_003097822.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827] gi|255918465|gb|ACU33976.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827] Length = 378 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 104/395 (26%), Positives = 180/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLE-IKASGPEIEITG-- 55 MKI VER + + + R + + +PV VLL A DG + + SG + E++ Sbjct: 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGAEDGSGDALTVSGFDYEVSAQC 60 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 +PA++ G VS LL DI + L + + N G + I+ G + F L + P Sbjct: 61 GVPATISDGGKALVSGKLLADITKALPN----HPVEINVDGARMTITCGSAKFSLPTMPV 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P+ + + EL V V + A ++ L G+ I D KL VA Sbjct: 117 EDYPALPSMPQL-AGELPGEVFGEAVAQVAVAAGKDDTLPMLTGVRLEI--ADGKLVLVA 173 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNI 232 TD RLA+ E + + +++VP K + + + L + + +++SL+ + + L+ Sbjct: 174 TDRFRLAMREFEWTPDETLGDVAVLVPAKTLNDSAKTLGASGAKIELSLAANDGLLGLSG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+D +FP Y+ ++P + ++ L QA+ RVS+++ Q V+L Sbjct: 234 NGRRTTTRLLDADFPKYRQLLPSEHSAAAIISVDTLVQAIKRVSLVAERGTQ-VRLEFGD 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ D G A E + V Y P+ I FN YLLE + + + + F S Sbjct: 293 AGLKLSAGGDDEGSAEEELPVDYQGDPVTIAFNPTYLLEGLQAVRTPRA---HLSFTTPS 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYV--LMPMRI 385 + + N+D +V YV LMP+R+ Sbjct: 350 RPALL--------KPVNEDGEVAEGYVYLLMPVRL 376 >gi|322412916|gb|EFY03823.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 378 Score = 114 bits (286), Expect = 2e-23, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IPV + + + + + S +I I IP S Sbjct: 2 IQFSINRTLFIQALNITKRAISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A+ +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E +++ + I FN YL+E + I SD V Sbjct: 293 EIAQNHISAHVNSPEVGKVNEDLDIVSQSGNDLTISFNPTYLIESLKAIKSDTV 346 >gi|75906227|ref|YP_320523.1| DNA polymerase III subunit beta [Anabaena variabilis ATCC 29413] gi|75699952|gb|ABA19628.1| DNA polymerase III, beta subunit [Anabaena variabilis ATCC 29413] Length = 387 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 89/358 (24%), Positives = 176/358 (49%), Gaps = 20/358 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQ 111 A V G+I + A LL DI +L +G +I+ E+ G V+++ + L+ Sbjct: 61 ADVWQSGAIALPAKLLVDITSRLPEG-EITLDDESATDGTATGEGLIVSLTPKTGKYQLR 119 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 + EFP E + L ++ L + + FA + +E + L G+ + ++ L+ Sbjct: 120 AMGAEEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQDTLEF 179 Query: 172 CAVATDGHRLAVAEVDIVAQIA---KMPSIIVPRKAVGEILRILSSKDSS---VKVSLSE 225 A TDGHRLAV E + + + VP +A+ E+ R+L+ +S + + L + Sbjct: 180 AA--TDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQ 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + Sbjct: 238 GQVIFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNI 297 Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 VKL++ S +L ++ + +MG ESMN ++I FN KYL+E + + S E+ Sbjct: 298 VKLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPSPEI 355 >gi|312599849|gb|ADQ91850.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599851|gb|ADQ91851.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599853|gb|ADQ91852.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599855|gb|ADQ91853.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599857|gb|ADQ91854.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599859|gb|ADQ91855.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599861|gb|ADQ91856.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599865|gb|ADQ91858.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599867|gb|ADQ91859.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599869|gb|ADQ91860.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599871|gb|ADQ91861.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599873|gb|ADQ91862.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599875|gb|ADQ91863.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599877|gb|ADQ91864.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599879|gb|ADQ91865.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599881|gb|ADQ91866.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599883|gb|ADQ91867.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599885|gb|ADQ91868.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599887|gb|ADQ91869.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599889|gb|ADQ91870.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599899|gb|ADQ91875.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599905|gb|ADQ91878.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599907|gb|ADQ91879.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SARA30] gi|312599909|gb|ADQ91880.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599911|gb|ADQ91881.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599913|gb|ADQ91882.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599915|gb|ADQ91883.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599917|gb|ADQ91884.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599919|gb|ADQ91885.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599921|gb|ADQ91886.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599923|gb|ADQ91887.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599925|gb|ADQ91888.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599927|gb|ADQ91889.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599931|gb|ADQ91891.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599933|gb|ADQ91892.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] Length = 184 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP+ + Sbjct: 26 GATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDW 82 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV Sbjct: 83 QSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVC 140 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 + + A + S+IVPRK V E++R+L ++ ++V + + I Sbjct: 141 SMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIR 184 >gi|225620184|ref|YP_002721441.1| DNA polymerase III subunit beta [Brachyspira hyodysenteriae WA1] gi|225215003|gb|ACN83737.1| DNA polymerase III beta (beta clamp) subunit [Brachyspira hyodysenteriae WA1] Length = 375 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 99/394 (25%), Positives = 194/394 (49%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + DI++ +G ++E K + +VL + +L + A+ + I Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRI--I 58 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQSFPE 115 +D C G++ V A + I++++ DG +ENE ++NI +G + + Sbjct: 59 LDDCEGEGAVAVYAKKISSILKEMPDGLITINVEENE---KINIESENGKTKHLIIGMKT 115 Query: 116 SEFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP+ E + S+ L + L ++ +T ++A E + L GI F + D K AV Sbjct: 116 DDFPAYPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAV 173 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNI 232 ATDG R+AV E + SII+ K + EIL + ++ D VK+ + +++ + Sbjct: 174 ATDGRRMAVIEREFEGVENGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQVYFQV 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 LI+G++PN++ VIP RVN +L A+ R V +++ VR + + L++S Sbjct: 233 GKYDFVSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVS 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + L + N +MG+++E +++ Y+ + +NY Y+ ++I I S + V F ++ Sbjct: 293 EESLKVKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDS-----EIVTFMVN 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S ++ +++ + +Y++MPM I Sbjct: 348 KDSSPTMVKEIERE---------DYYYIIMPMSI 372 >gi|158520111|ref|YP_001527981.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3] gi|158508937|gb|ABW65904.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3] Length = 377 Score = 114 bits (285), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/399 (22%), Positives = 196/399 (49%), Gaps = 36/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++VE+ DI+E+L + I +++++ ++ ++L++ + + A+ E G PA+ Sbjct: 1 MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-------SF 113 ++ G+I ++A Y+IV+K+ D I +E + +++ + S Q SF Sbjct: 61 IENEGTIAINARQFYEIVKKI-DSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHF--AMATEEIRYYLNGIFFHINEEDL-K 170 P + P + Y+ ++ S+ KN++ + TE+ + + +I + + K Sbjct: 120 P--QLPVIADVSYI---DVNSADFKNMILWATVITSSGTEKRAHVIGANLEYIKDGKIKK 174 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 + V+TDG RL E P S I+P+KA+ E+ + L + ++++ ++ Sbjct: 175 IRMVSTDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKD-EGTIQIGTRDNYF 233 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + + + L+ GE+PN + + + E+++N L+ ++R+SI+++ + V Sbjct: 234 IVKNNNEIIYINLLSGEYPNLETLFSDEKGRTEIKINRKKLKDMLERMSILTTDNYKGVI 293 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + + L + NPD G++ E M++ Y++ + FN Y ++ ++ I DDEV Sbjct: 294 FTFEKNILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFIDAVNLIE-----DDEVC 348 Query: 348 FRLDSSNSSVFI-RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +L + + GK ++ N ++MPM+I Sbjct: 349 LKLKEDQAPCIVCGGKHPENIN----------IIMPMKI 377 >gi|331700397|ref|YP_004397356.1| DNA polymerase III subunit beta [Lactobacillus buchneri NRRL B-30929] gi|329127740|gb|AEB72293.1| DNA polymerase III, beta subunit [Lactobacillus buchneri NRRL B-30929] Length = 379 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 166/342 (48%), Gaps = 20/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R+ + L R I K TIP+ + + A L + S +I I + A Sbjct: 1 MKFSIGRTAFTKGLNTVSRAISTKTTIPILTGLKIVAGPDGLVLTGSDADISIETTLKAD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +IV+KL EN + I+ G S+F + Sbjct: 61 DPDNMLVIESEGAIVLPARFFTEIVKKLPKDTITLEVGEN---FQTMITSGQSSFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + S LA+ + K ++ +T A++ +E R L G+ F I+ D + A Sbjct: 118 DANNYPHLPEIQTNDSIPLAADLFKQIISQTVVAVSNQESRPILTGVHFVIS--DNHVMA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + I ++P K++ E+ +++ V +S++E++ I Sbjct: 176 VATDSHRLSQRKVTLETPINGSYDFVIPGKSLTELSKMIDDGQDEVSLSVTENQALFVIG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 + RL++G +P+ +IP S+D + L A++R S++S R VK+++ Sbjct: 236 NTLFYSRLLEGNYPDTTRLIPDSHDTRISFEAPELLAAIERASLLSHESRNNVVKITIDP 295 Query: 293 DKLCMTV--DNPDMGKA---IESMNVYYNECPMDICFNYKYL 329 DK +T+ ++PD+G +E ++ NE ++I FN Y+ Sbjct: 296 DKKTVTIYGNSPDVGNVEEDLEPKSLEGNE--LEISFNPDYM 335 >gi|312599863|gb|ADQ91857.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599891|gb|ADQ91871.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599893|gb|ADQ91872.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599895|gb|ADQ91873.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599897|gb|ADQ91874.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599901|gb|ADQ91876.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599903|gb|ADQ91877.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599929|gb|ADQ91890.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599935|gb|ADQ91893.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599937|gb|ADQ91894.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599939|gb|ADQ91895.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599941|gb|ADQ91896.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599943|gb|ADQ91897.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599945|gb|ADQ91898.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599947|gb|ADQ91899.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599949|gb|ADQ91900.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599951|gb|ADQ91901.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599953|gb|ADQ91902.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599955|gb|ADQ91903.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599957|gb|ADQ91904.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599959|gb|ADQ91905.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599961|gb|ADQ91906.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599963|gb|ADQ91907.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599965|gb|ADQ91908.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599967|gb|ADQ91909.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599969|gb|ADQ91910.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599971|gb|ADQ91911.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599973|gb|ADQ91912.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599975|gb|ADQ91913.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599977|gb|ADQ91914.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599979|gb|ADQ91915.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599981|gb|ADQ91916.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599983|gb|ADQ91917.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599985|gb|ADQ91918.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599987|gb|ADQ91919.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599989|gb|ADQ91920.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599991|gb|ADQ91921.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] Length = 184 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP+ + Sbjct: 26 GATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDW 82 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV Sbjct: 83 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVC 140 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 + + A + S+IVPRK V E++R+L ++ ++V + + I Sbjct: 141 SMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIR 184 >gi|297558987|ref|YP_003677961.1| DNA polymerase III subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843435|gb|ADH65455.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 379 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 103/396 (26%), Positives = 189/396 (47%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEIT--GA 56 MK VER + E + R + + ++PV +LL+A DGL +++ SG + E++ A Sbjct: 1 MKFRVERDVLAEAVAWTARTLPTRPSVPVLVGILLEAGEFDGLQQLRLSGFDYEVSTQAA 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + V+ G++ V+ LL +I R L AQ + G +V ++ G + F L + P Sbjct: 61 VDVEVEEPGTVLVTGKLLAEITRNLP--AQPVEISTD--GAKVVVTGGSAKFTLTTMPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ E V S + S V + A ++ L G+ I E + L + T Sbjct: 117 DYPTLPEMPGV-SGTVGSDAFAAAVSQVAVAAGRDDTLPMLTGVRVEIEGETITLAS--T 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHL 230 D +RLAV E + + ++ +VP K + + + L+S + V ++LS E I Sbjct: 174 DRYRLAVREFTWKPENPDLSAVALVPAKTLHDTAKSLTSG-AEVSIALSDGGSGEGMIGF 232 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + RL+DGEFP Y+ ++P + + V+ + +AV RVS+++ R ++LS Sbjct: 233 EGGGRRTTTRLLDGEFPKYRALLPDTFNSVAEVSRSEFVEAVKRVSLVAE-RNTPLRLSF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S +L + + +A+E + + + I FN +LL+ + I +D V RL Sbjct: 292 SQGQLVLEAGTGEEAQAVEVLEADLDGDDIQIAFNSGFLLDGLGAIGTD-------VARL 344 Query: 351 --DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S + GK + ++ + + Y++MP+R Sbjct: 345 HFTTSTKPSILTGKPAEEGSSPEYR----YLIMPVR 376 >gi|222152203|ref|YP_002561378.1| DNA polymerase III subunit beta [Streptococcus uberis 0140J] gi|222113014|emb|CAR40317.1| DNA polymerase III, beta chain [Streptococcus uberis 0140J] Length = 378 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 91/352 (25%), Positives = 176/352 (50%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ RS ++ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 2 IQFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSSTDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A+ +I+ L D ++ FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITDTGSILLEANFFINIISSLPD---VTLDFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171 ++P +E L + +LK+L+ T FA +T+E R L G+ + N +D K Sbjct: 118 KDVDQYPRLQEVSTDNPLVLETKLLKSLINETAFAASTQESRPILTGVHLTLSNHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ + ++ + + ++++P +++ E + + +V++ S S+I Sbjct: 177 -AVATDSHRMS-QRLLVLDKASTDFNVVIPSRSLREFSSVFTDDIETVEIFFSPSQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E++S RL++G +P+ ++ + E N LR A++R ++S + + VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLLINQFETEATFNTQALRHAMERAFLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E + V + + I FN YL+E + + S+ V Sbjct: 295 KENTISAHVNSPEVGKVNEELEIVEKSGSDLTISFNPTYLIEALKALKSETV 346 >gi|111020656|ref|YP_703628.1| DNA polymerase III subunit beta [Rhodococcus jostii RHA1] gi|110820186|gb|ABG95470.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus jostii RHA1] Length = 394 Score = 114 bits (284), Expect = 3e-23, Method: Compositional matrix adjust. Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 28/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R + + + R + + +PV VLL A + L + E+ + A Sbjct: 6 LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI + L + + E GT V I+ G + F L + P ++P Sbjct: 66 VGSAGQVLVSGKLLADITKSLPN-KPVDVTLE---GTRVLITCGSAKFSLPTMPVEDYPQ 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + V + + A ++ L GI I + L A TD R Sbjct: 122 LPQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVLAA--TDRFR 178 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM- 237 LAV E++ A ++++P K + E + L+ +S V+++L N L + Sbjct: 179 LAVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIV 238 Query: 238 ------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+D EFP ++ ++P + V L +A+ RV++++ R V+L S Sbjct: 239 NDGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVAE-RGAQVRLQFS 297 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ L ++ D G+A E +N + P+ I FN YL ID +SS + ++V+F Sbjct: 298 TEGLLLSAGGDDAGRAEEGLNAVFQGEPLTIAFNPGYL---IDGLSS--LHSEQVLFGFT 352 Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385 + + +R + DS N + Y+LMP+R+ Sbjct: 353 TPSRPAVLRPATEDEIEPDDSGNFAAPESAYTYLLMPVRL 392 >gi|323487686|ref|ZP_08092944.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2] gi|323398420|gb|EGA91208.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2] Length = 378 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 88/359 (24%), Positives = 171/359 (47%), Gaps = 28/359 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R ++E L + + K TIP+ + + + + + S +I I IPA Sbjct: 1 MKFEIKRERLVEGLNDVMKAVSSKTTIPILTGIKMDVSSEGMRLTGSDSDITIQTFIPAE 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV------NISHGDS 106 D GSI + A + +I+RKL NE+ E+ +I G S Sbjct: 61 EDGEQIIQVTNGGSIVLQAKVFGEIIRKL---------PTNEVEIEITGNFQTHIRSGKS 111 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 F+L ++P + + F + + +LK + T FA+++ E R L G+ + + Sbjct: 112 EFHLIGLDAMDYPQLPDIQDDRLFTIPADLLKTINRETVFAVSSSETRPVLTGVHWEV-- 169 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 +D +L VATD HRLA + + S+++P K++ E+ +IL +V++ ++ Sbjct: 170 KDGELVCVATDSHRLARRKTKLETLPEGEYSVVIPGKSLTELNKILDDTSEAVEIVMTNQ 229 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQA 285 ++ + + RL++G +P+ +IP + VN +L QA+DR S+++ R Sbjct: 230 QVLFKSKHILFFSRLLEGNYPDTSRLIPAEYKTTVTVNGRSLLQAIDRASLLAREERNNV 289 Query: 286 VKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342 V+ S + ++ ++P++GK E + E + I F+ K++++ + I +VV Sbjct: 290 VRFSAKEGTDVEVSSNSPEVGKVEEQLQAQSIEGEELKISFSAKFMMDALKAIDGQDVV 348 >gi|157363350|ref|YP_001470117.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO] gi|157313954|gb|ABV33053.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO] Length = 367 Score = 114 bits (284), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 181/370 (48%), Gaps = 26/370 (7%) Query: 19 RIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDI 77 + I K P+ +L ++DG + A+ E + + + D G V A +Y+I Sbjct: 20 KTIPSKTIKPIMACILFDISHDGTF-LHATDLETGVKARMESEADGEGKFAVDAKTVYEI 78 Query: 78 VRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 VR L + ++ F N + E G S F L + +FP + L + Sbjct: 79 VRTLPNEEEVLLEFSSNLMTLEC----GRSKFRLPTMDPGDFPEISLTTEGNTLMLDAKT 134 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 + +++ER F A +E LNG+F+ I L+L VA+DG RLA++E + AQ Sbjct: 135 INDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRL--VASDGFRLALSEERLNAQSES-- 190 Query: 197 SIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 S ++ K++ E+ I+ S DS + + R+ LN + + +R+++ +FP+Y+ V+P Sbjct: 191 SFLISLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMRVVEIDFPDYRKVLPK 250 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 + ++ + + +A+ R +++ ++V+L +S D L ++ +PD G+ E + + Sbjct: 251 AFKSKVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSRSPDYGEVNEEIPIKK 310 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 + I FN +LLE + ++ ++EV E+ F +DS++ + N N Sbjct: 311 EGEDITIAFNPLFLLEAMRHVHTEEV---ELNF-VDSTSP----------LQINPLNVEG 356 Query: 376 AFYVLMPMRI 385 Y++MP+RI Sbjct: 357 YLYIIMPIRI 366 >gi|42781777|ref|NP_979024.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987] gi|42737700|gb|AAS41632.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] Length = 376 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 97/353 (27%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + AN + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAFIPILSGIKITANQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I + L Sbjct: 61 MDDEQITTTLQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP SEFP+ + E ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPASEFPNVPQIEDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDYNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETQISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN ++IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ V + E + I F+ +++L+ + I + V Sbjct: 293 NESTIKVSSNASQIGKIYETQQVDAIHGEKQLHISFDGRFMLDALRAIKEETV 345 >gi|16329463|ref|NP_440191.1| DNA polymerase III subunit beta [Synechocystis sp. PCC 6803] gi|2494196|sp|P72856|DPO3B_SYNY3 RecName: Full=DNA polymerase III subunit beta gi|1651945|dbj|BAA16871.1| DNA polymerase III beta subunit [Synechocystis sp. PCC 6803] Length = 391 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 102/405 (25%), Positives = 185/405 (45%), Gaps = 36/405 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLL+A+ L + A + I + Sbjct: 1 MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTE--VNISHGDSNFYLQSFPE 115 A V G IT+ A LL DIV +L DG ++ + + G I+ F ++ Sbjct: 61 ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLDA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +FP+ E V L + L + FA +T+E + L G+ HI L A Sbjct: 121 DDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGV--HIKGSGDSLEFAA 178 Query: 176 TDGHRLAVAEVDIVAQIAKMPSII-----------VPRKAVGEILRILSSKDSSVKVSL- 223 TDGHRLAV E + + ++I +P +A+ E+ R+++S+ +S VSL Sbjct: 179 TDGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLV 238 Query: 224 -SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 +++++ + ++ R ++G +P Y +IP + + + L +++RVS+++ + Sbjct: 239 VNDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQK 298 Query: 283 IQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V +L S ++L + V+ D+G ESM I FN KYL++ + + S Sbjct: 299 NNLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPS-- 356 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ +L+ N V + Y++MP+R+ Sbjct: 357 ---NDIQMQLNEGNQPVIF---------TPLGGLKMTYLVMPVRL 389 >gi|332654820|ref|ZP_08420562.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16] gi|332516163|gb|EGJ45771.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16] Length = 368 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 11/343 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + E++ + + A R + K++IP +L++A D L + E I +PA Sbjct: 1 MKFSCEKALLTAAVSIASRAVAAKSSIPAMEGILIEA-DTRLRLTGYNLETGIQATVPAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ +SA L +I+RK+ D + F ++ + VNI G S F + EFP Sbjct: 60 IKQPGSLVLSARLFGEIIRKMPDDV-VVFTSKDYM---VNIKCGMSEFNILGTDPEEFPE 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L S L++++ +T FA++ E R G F ++ DL + V+ DG+R Sbjct: 116 LPTVDQQNSITLEQSALRSMIAQTLFAVSDNESRPVHTGSLFEVDHNDLTV--VSVDGYR 173 Query: 181 LAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA+ + D + + S +VP A+ E+ +I S + V V+ I + Sbjct: 174 LALRREKADKIGGSEQF-SFVVPGSALSEVEKICSG-EGPVTVNQGARHILFQAGDTVLV 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R ++GEF Y+N IP +N +++ + L +++RVS++ S ++++ + D + Sbjct: 232 CRRLEGEFLPYRNAIPRNNPIQIQCDTRALLSSIERVSLIISEKLKSPLRCVFGDGMVDI 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +G A + + + ++I FN KYL++ + +D++ Sbjct: 292 TTKTAIGDAADQCPIDGDGQGLEIGFNNKYLMDALKAAPADKL 334 >gi|226354812|ref|YP_002784552.1| DNA polymerase III subunit beta [Deinococcus deserti VCD115] gi|226316802|gb|ACO44798.1| putative DNA-directed DNA polymerase (DNA polymerase III, beta subunit) [Deinococcus deserti VCD115] Length = 360 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 38/353 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + E L R+I +++ P+ + ++ + L + + EI+++ +PA Sbjct: 1 MKANVTKKTLSEGLSLLERVIPGRSSNPLLTALKVETTEAGLTLSGTNLEIDLSCFVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQ-------- 111 V + V AHL IVR L G ++ E E+ G E+++ G S+F LQ Sbjct: 61 VQQPQNFVVPAHLFAQIVRNL--GGELV---ELEITGNELSVRSGGSDFKLQTGDIEAYP 115 Query: 112 --SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 SFPE S EE +F SSV +A + E + GI E Sbjct: 116 PLSFPEHADVSLNAEELAKAF---SSV--------RYAASNEAFQAVFRGIKLEHRPESA 164 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 ++ VA+DG+R+A+ D A ++I+P ++ E++R+L KD + + E + Sbjct: 165 RV--VASDGYRVAIR--DFPAS-GDGRNLIIPARSADELIRVL--KDGEARFTYGEGLLS 217 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKL 288 + + + M+++L+DG+FP+Y+ VIP ++ + T L++AV+RV++++ V+ Sbjct: 218 VTTDRVRMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEF 277 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSD 339 +S KL + + D G+A ++++V E M + FN +++L+ + I D Sbjct: 278 LVSEGKLRLAAEG-DYGRAQDTLDVVQGGSEPAMSLAFNARHVLDALGPIEGD 329 >gi|218290895|ref|ZP_03494959.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239162|gb|EED06364.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 370 Score = 113 bits (283), Expect = 4e-23, Method: Compositional matrix adjust. Identities = 93/364 (25%), Positives = 177/364 (48%), Gaps = 17/364 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ + L RI + + V VL++A G + + A ++ + + AS Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLMEAERGQVTLSAYDYDVALRMTVEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A L ++VR+L G I+ + L +++ G ++ L F EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDV--GTTHAELHGFDPEEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDG 178 + + E+++ L +E +A + ++ R L G++ + ED KL +ATDG Sbjct: 119 DLPDMTGIVPVEISAKTLVEAIESVGYAASKQDASRPILEGVY--VGYEDGKLIWMATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESL 235 RLA + + + SI +PR+A+ E+ R+L + D ++++V S S + + Sbjct: 177 LRLA----KVSQTVDREMSIRCTIPRRALTELTRLLDADDDATLQVYQSASYVMFTWNGV 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL GE+P+ V+P E V+ L++AV+RV++M+ V L + L Sbjct: 233 QLFGRLYQGEYPDTSRVMPREFAAECTVDRRRLKEAVERVTVMAEHEHHTVSLYVKGGAL 292 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +T + + G+A E + V + + + N +Y+LE+++ + S +VV +V N Sbjct: 293 ELTSRSTERGRAREEVPLVEFAGDEIKVSLNARYVLEMLEAVESSKVVRMQVA---QGRN 349 Query: 355 SSVF 358 S +F Sbjct: 350 SVLF 353 >gi|312873272|ref|ZP_07733327.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|311091152|gb|EFQ49541.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d] Length = 376 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVTTNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|315654132|ref|ZP_07907048.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners ATCC 55195] gi|315488828|gb|EFU78474.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners ATCC 55195] Length = 380 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 5 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 65 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 121 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 179 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 300 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 354 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 355 PLRPFVVVPKDSDEK 369 >gi|110589514|gb|ABG77266.1| DNA polymerase III beta-subunit DnaC [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 188 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 51/160 (31%), Positives = 104/160 (65%), Gaps = 2/160 (1%) Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 MA +++RYYLNG+ I+ +K VATDGHRLA +++ + +I+PRKA+ E Sbjct: 1 MAQQDVRYYLNGLLLEISNGIIK--TVATDGHRLAFSQIKAIENYELKTQLIIPRKAIIE 58 Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267 + R+L +++++ +S + + ++++ + +LIDG FP+Y+ VIP +N+ +L ++ + Sbjct: 59 LYRLLDESENTIRFEVSSNYVRVHLDRTIFTSKLIDGVFPDYEKVIPKNNENKLVMDKSE 118 Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 L++++ R SI+S+ + + +KL + D++ + +NP+ +A Sbjct: 119 LKKSLRRASILSNEKYKGIKLEIKEDRVQIIANNPEQEEA 158 >gi|259500776|ref|ZP_05743678.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners DSM 13335] gi|259167470|gb|EEW51965.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners DSM 13335] Length = 380 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 5 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 65 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 121 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 179 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 300 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 354 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 355 PLRPFVVVPKDSDEK 369 >gi|329919782|ref|ZP_08276733.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G] gi|328937129|gb|EGG33557.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G] Length = 376 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|169830221|ref|YP_001716203.1| DNA polymerase III subunit beta [Candidatus Desulforudis audaxviator MP104C] gi|169637065|gb|ACA58571.1| DNA polymerase III, beta subunit [Candidatus Desulforudis audaxviator MP104C] Length = 389 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 95/370 (25%), Positives = 174/370 (47%), Gaps = 36/370 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---- 56 M+ R +L + R + +K+ + +L +A G +A + +TG+ Sbjct: 1 MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAG----EAGQQGVSLTGSNMDL 56 Query: 57 -----IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 IPA V V G++ + A L +IVR+L D +S +++ + V +++G + L Sbjct: 57 TIRRIIPAGVTVSGAVVLPARQLAEIVRRLPD-VPVSITADHQKNS-VELTYGRARALLN 114 Query: 112 SFPESEFPSTKEE-------------EYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 + +EFP + S V NL R +A T+++R Sbjct: 115 GYSAAEFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFT 174 Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILS-SK 215 G+ I+E +++ AVATD HRLA+ VD + KM +IV +A+GE++R+LS ++ Sbjct: 175 GVLLEIDEGEIR--AVATDTHRLAMHRVDYEGEPENRKM-QVIVSGRALGELVRVLSQAE 231 Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR-VNCTNLRQAVDR 274 + +V+++E+ I ++ + RLI G +P+Y+ VIP + + + L Q V+R Sbjct: 232 EEQFEVTIAENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVER 291 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 + ++ + L L L +T + + G E + V ++I FN KYL E + Sbjct: 292 AATLAQDGSPVINLHLGQGLLGVTAQS-EAGSIHEEIPVELAGQELEISFNAKYLEEALR 350 Query: 335 NISSDEVVDD 344 S +++ D Sbjct: 351 WCESTQLILD 360 >gi|302190773|ref|ZP_07267027.1| DNA polymerase III, beta chain [Lactobacillus iners AB-1] gi|309807871|ref|ZP_07701803.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|312872661|ref|ZP_07732726.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|325913673|ref|ZP_08176035.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B] gi|308168973|gb|EFO71059.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|311091703|gb|EFQ50082.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|325477032|gb|EGC80182.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B] Length = 376 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|227498787|ref|ZP_03928927.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226904239|gb|EEH90157.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 372 Score = 113 bits (283), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 85/345 (24%), Positives = 161/345 (46%), Gaps = 7/345 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + E + + + + + I P+ + + N LE+ A + + + Sbjct: 1 MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSMKKVLEVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I V A L D++ K I + E E+ ++ +++ ++PS Sbjct: 61 GNEDGVILVPAQSLGDLLAKFS--TDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPS 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L +L L+ +T +A +T+E R G+F + ++ + V T+ HR Sbjct: 119 FPEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVF--MEKKGQHITCVGTNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ D S+++P + + EI L+ + V + +S+I + + SLS+ Sbjct: 177 LAIKSADPETADDSEYSLLIPARVLKEIANNLTGELPEDVAIIQKDSKILVRMGSLSLVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G FP+Y IP S +N +L +A+ RVS+ + ++L++ +D++ ++ Sbjct: 237 SLIEGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSS 296 Query: 300 DNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 D G+ +E M E P++I FN KYL++ NIS D+VV Sbjct: 297 AASDRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISCDQVV 341 >gi|271961611|ref|YP_003335807.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270504786|gb|ACZ83064.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 379 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 186/399 (46%), Gaps = 36/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M +ER + E + R + + ++PV + L+ + ++K SG + E++ + Sbjct: 1 MMFRIERDVLAEAVAWTARSLPARPSVPVLAGMRLEVTE-KGQLKLSGFDYEVSAEVTLE 59 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQ-ISFFKENELGTEVNISHGDSNFYLQSFPES 116 P S + G + VS LL +I R L AQ + F E G + ++ G + F L + P Sbjct: 60 PQSGE-AGVVLVSGRLLAEITRALP--AQPVDFVVE---GAKAVVTCGSARFTLLTMPVE 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++PS + S V + V + A ++ L G+ I + + L A T Sbjct: 114 DYPSLPTMPPAAG-RVGSDVFASAVGQVAVAAGKDDTLPMLTGVRMEIEGDTVTLAA--T 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIH 229 D +RLAV E+ +I ++P K + + + L S + V+V++S E I Sbjct: 171 DRYRLAVRELKWQPGQPDFSAIAMIPGKTLADAAKALGSTGAEVEVAMSSVGGTGEGMIG 230 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + RL+D EFP Y++++P ++ + +AV RV++++ R V+L+ Sbjct: 231 FSSAGRRTTTRLLDPEFPKYRSLLPTEFSARADLSTSAFVEAVKRVALVAE-RNTPVRLA 289 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 D++ + + D +A+E + V + ++I FN+++LLE + I SD V R Sbjct: 290 FRGDEVVLEAGSGDEAQAVEVLPVDFEGDDINIAFNHQFLLEGLGAIDSD-------VAR 342 Query: 350 LD---SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L S+ ++ GK D D + Y++MP+R+ Sbjct: 343 LQMTTSTKPAILTGGKHVDDGGVPDYR----YLIMPIRL 377 >gi|309805919|ref|ZP_07699951.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 03V1-b] gi|308167695|gb|EFO69842.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 03V1-b] Length = 376 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|163848190|ref|YP_001636234.1| DNA polymerase III subunit beta [Chloroflexus aurantiacus J-10-fl] gi|222526095|ref|YP_002570566.1| DNA polymerase III subunit beta [Chloroflexus sp. Y-400-fl] gi|163669479|gb|ABY35845.1| DNA polymerase III, beta subunit [Chloroflexus aurantiacus J-10-fl] gi|222449974|gb|ACM54240.1| DNA polymerase III, beta subunit [Chloroflexus sp. Y-400-fl] Length = 377 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 184/396 (46%), Gaps = 35/396 (8%) Query: 1 MKITVERSDI---LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57 MK+T + D+ L +GHA + K+T+PV ++LL ++G L++ A+ E+ I I Sbjct: 1 MKLTCMQEDLKRGLAAVGHA---VAGKSTLPVLANILLATDEGRLKLTATNLEVGINRWI 57 Query: 58 PASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 A++ G++ V A LL D+V L D +S ++ + + + G ++ Sbjct: 58 SATITRDGAVAVPAKLLTDVVGGLPNDKVTLSLDQKTQ---TLRVECGRFVSNIKGVDAD 114 Query: 117 EFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFPS L + V + +++ FA AT+E R L G+ ++ + L VA Sbjct: 115 EFPSLPTVSAQTPLVSLPAEVWQEAIDQVAFAAATDESRPILTGVLVRTRDQQVTL--VA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--NIE 233 DG RLA+ + + A +A ++P + + E+ RI+ D+ V + + H+ + E Sbjct: 173 ADGFRLAMRTIQLSAPVAHAVDCLIPARTLSELARIIGDTDAEVAMVYTPGGSHVLFHTE 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS---- 289 ++ + RLI+G FP+++ +IP + ++ + L +AV S + VKL Sbjct: 233 NIEVVSRLIEGRFPDFERIIPQQYLTRMVLDNSELAKAVKLASFFAGSSQNVVKLKIEPA 292 Query: 290 --LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L+ ++ ++ + ++G ++ I N ++L + I + S +++ Sbjct: 293 SELAPGRVVISANAAELGDNTSELDGSVTGEGGVIALNVRFLADAIAAVHS-----NQIA 347 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 F + S+ S + +D +++MPM Sbjct: 348 FEMQSAQSPAVFKPVGQDGY---------IHIVMPM 374 >gi|297582340|ref|YP_003698120.1| DNA polymerase III subunit beta [Bacillus selenitireducens MLS10] gi|297140797|gb|ADH97554.1| DNA polymerase III, beta subunit [Bacillus selenitireducens MLS10] Length = 380 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/361 (25%), Positives = 171/361 (47%), Gaps = 32/361 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++R ++ + + I + TI + + + A+ + + S ++ I IP Sbjct: 1 MKFTIQRDAFVQSVADVSKAISPRTTIQILTGIKIVADQDGITLTGSDSDLSIESFIPKE 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106 D GSI + A D+++KL E + VN I+ G S Sbjct: 61 KDGEELVNIQEEGSIVLQARFFGDMIKKL---------PETSIEVAVNDQFIAQITSGGS 111 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 F + E+P + E F + ++LK L+ +T FA+++ E R L GI +H+ Sbjct: 112 VFNINGIDPDEYPRLPDVEEADLFRMPKNLLKTLIRQTAFAVSSVETRPILTGIHWHL-- 169 Query: 167 EDLKLCAVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS 224 ED L ATD HRLA+ A+VD ++++P K + E+ +IL+ D ++V ++ Sbjct: 170 EDSVLTCTATDSHRLAMRMAKVDDNENNLSFSNVVIPGKTLTELNKILNDTDELLEVVVA 229 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS---SV 281 ++I + + RL++G +P +N+IP + +++ L A++R ++S Sbjct: 230 GNQILFKGDYFLLYSRLLEGNYPATKNMIPTGSKTSVKLETKRLLDAIERALLLSREGKN 289 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDE 340 + VK +L S +L +T P++GK E + Y + I FN K L++ + + + E Sbjct: 290 NVVHVK-NLESGELEITSVTPEVGKVTEHVTTMSYEGDELKISFNGKNLIDALRVMEASE 348 Query: 341 V 341 V Sbjct: 349 V 349 >gi|251781470|ref|YP_002995771.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390098|dbj|BAH80557.1| DNA polymerase III, beta chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 378 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 175/354 (49%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IPV + + + + + S +I I IP S Sbjct: 2 IQFSINRTLFIQALNATKRGISSKNAIPVLSTIKINVSSSDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A+ +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EIAQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|309804912|ref|ZP_07698974.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|309809746|ref|ZP_07703600.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|308165851|gb|EFO68072.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|308169925|gb|EFO71964.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 2503V10-D] Length = 376 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|317496619|ref|ZP_07954966.1| DNA polymerase III [Gemella moribillum M424] gi|316913284|gb|EFV34783.1| DNA polymerase III [Gemella moribillum M424] Length = 379 Score = 113 bits (282), Expect = 5e-23, Method: Compositional matrix adjust. Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 20/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+E+S+ L L H R+I + + + L+ N+ +L +KAS + + +I A Sbjct: 1 MKFTIEKSNFLAGLNHVARVIAPNSLFEILKGIKLELNENVLVLKASDSLVSVEFSIDAY 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ G + + + +I+RK A + + + + + G S F ++ Sbjct: 61 DDDKEIITIEEEGQVVLPSRNFIEIIRK----APTNLIEIETIDNNILVKSGKSEFNVKG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +E+P +S L V ++++ T F A + R L G+ F +N + L Sbjct: 117 YDANEYPEFPVISKEHSLTLDGKVFNDIIKETVFCTAPNDQRPILEGVNFTLNNK--VLT 174 Query: 173 AVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 A ATD +RL+ ++ + ++A K ++I+PRKA+ R++ V++ +RI L Sbjct: 175 ATATDSYRLSRRQITL-EEVADDKEFNLIIPRKALTYFQRMIEEGKDQVEIFYENNRIVL 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 +++ +V LI G +PN +IP + N L AVDRVS+MS + +KL Sbjct: 234 YYQNVVYTVLLISGNYPNTNKLIPTVFECTFVSNGRELFDAVDRVSLMSREDKDDIIKLI 293 Query: 290 LSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + L ++ + D+G A+E + V E +I + +YL E I I+S+E++ Sbjct: 294 VKDNMLEISSQSKDLGSAVEEIKVESTLEEDVFEISVSGRYLKEAIYAIASEEII 348 >gi|323126261|gb|ADX23558.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 378 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 175/354 (49%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IPV + + + + + S +I I IP S Sbjct: 2 IQFSINRTLFIQALNATKRGISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A+ +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EIAQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|56961784|ref|YP_173506.1| DNA polymerase III subunit beta [Bacillus clausii KSM-K16] gi|56908018|dbj|BAD62545.1| DNA-directed DNA polymerase III beta subunit DnaN [Bacillus clausii KSM-K16] Length = 380 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/355 (25%), Positives = 171/355 (48%), Gaps = 20/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + +ER+ ++ + H + + + TIP+ + L A+ L + S ++ I IP Sbjct: 1 MHVIIERNRMVHDVQHVAKAVSSRTTIPILTGIKLVADANGLTLTGSDSDLSIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + + +IV+KL G I ++ I G S F L Sbjct: 61 ENEREIVQIEQAGSIVLQSKYFAEIVKKL-PGETIEIQVHDQFA--ATIRSGSSVFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + + F L +L+N++ +T FA++T+E R L G+ +I E+ +L Sbjct: 118 LDPEEYPRLPQLKEDLIFSLPQDMLRNIIRQTVFAVSTQETRPVLTGV--NIETENGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ + I +Q + ++++P K++ E+ +IL ++ ++E++I Sbjct: 176 CTATDSHRLAMRKTKIDSQDEGLEFKNVVIPGKSLQELSKILEDTSDLAEIVVTENQILF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVK 287 + +L RL++G++P +IP V L ++R ++S + VK Sbjct: 236 KLGNLLFFSRLLEGKYPVTSGMIPTQFKTSFVVKTKELVHTLERAMLLSREAKNNVINVK 295 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 +L +++ +T + ++GK E M + + I FN K +L+ + + SDEV Sbjct: 296 -TLGDNQIEITSTSQEIGKVTEKMATDQFEGDEIRISFNGKNILDALKVVDSDEV 349 >gi|300871560|ref|YP_003786433.1| DNA polymerase III subunit beta [Brachyspira pilosicoli 95/1000] gi|300689261|gb|ADK31932.1| DNA polymerase III, beta subunit [Brachyspira pilosicoli 95/1000] Length = 375 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 99/398 (24%), Positives = 192/398 (48%), Gaps = 39/398 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + DI++ +G ++E K + +VL +L + A+ G++ A Sbjct: 1 MKFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTAT------DGSVWAR 54 Query: 61 VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQ 111 + G++ V A + I++++ DG +ENE ++NI +G + + Sbjct: 55 SRIMLDDYEGEGTVAVYAKKISSILKEMPDGMITINVEENE---KINIESENGKTKHLII 111 Query: 112 SFPESEFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 +FPS E ++ L + L ++ +T ++A E + L GI F + D K Sbjct: 112 GMKTDDFPSYPESNGDINYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSK 169 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRI 228 AVATDG R+A+ E + A SII+ K + EIL + ++ D VK+ + ++ Sbjct: 170 FLAVATDGRRMAIIEREFEGIDAGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQV 228 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVK 287 + + LI+G++PN++ VIP RVN +L A+ RV +++ VR + + Sbjct: 229 YFQVGKYDFVSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRVVPMINDVRSKRMI 288 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L++S + L + N +MG+++E +++ Y + +NY Y+ ++I I S + V Sbjct: 289 LTVSEESLKVKGINQEMGESLEEIDIKYTGEEHSVAYNYTYIQDVIKQIDS-----EIVT 343 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F ++ +S +R +++ + ++++MPM I Sbjct: 344 FMVNKDSSPTIVREIERE---------DYYFIIMPMSI 372 >gi|326202773|ref|ZP_08192640.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM 2782] gi|325986850|gb|EGD47679.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM 2782] Length = 366 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 171/340 (50%), Gaps = 9/340 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++L + + + K T+P+ +LL A D ++ + EI I + A Sbjct: 1 MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNAEDKF-KLTGNDLEIGIECYVEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ + DIVR+L D + N L V + +S+F ++ S +PS Sbjct: 60 IRSTGSIVINSKIFGDIVRRLPDAEVLIEVTVNNL---VVVECENSHFEIKGINPSGYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L LK+++ +T FA+ ++E R L G + +D +L V+ DG R Sbjct: 117 LPVVDKENVLTLTQGDLKDMIRQTVFAVGSDENRPVLTGSLIEV--KDKELVIVSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I S+I+P K + EI +IL + D V V S +++ + +S + R Sbjct: 175 LALRRKILENDINDF-SVIIPGKTLNEISKILQATDDEVSVYSSNNQVVFDAKSWRIVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LI+G+F NY +++ + ++ +N + +++R S++S + + VKL + +DK+ +T Sbjct: 234 LIEGKFLNYNSLLNKDFETKVVINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIVIT- 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 N D+G E + ++I +N +L++ + I D Sbjct: 293 SNADLGNVREEVKAEIEGNSLEIGYNPAFLIDALKAIDED 332 >gi|296125981|ref|YP_003633233.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563] gi|296017797|gb|ADG71034.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563] Length = 375 Score = 113 bits (282), Expect = 6e-23, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 192/394 (48%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + DI++ +G ++E K + +VL +L + A+ + I Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTATDGSVWARSRI--I 58 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQSFPE 115 +D C G++ V A + I++++ DG +ENE ++NI +G + + Sbjct: 59 LDDCEGEGAVAVYAKKISSILKEMPDGLITINVEENE---KINIESENGKTKHLIIGMKT 115 Query: 116 SEFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP+ E S+ L + L ++ +T ++A E + L GI F + D K AV Sbjct: 116 DDFPAYPESNGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAV 173 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNI 232 ATDG R+AV E + SII+ K + EIL + ++ D VK+ + +++ I Sbjct: 174 ATDGRRMAVIEREFEGVENGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQVYFQI 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 LI+G++PN++ VIP RVN +L A+ R V +++ VR + + L++S Sbjct: 233 GKYDFVSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVS 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + L + N +MG+++E +++ Y+ + +NY Y+ ++I I S + V F ++ Sbjct: 293 EESLKVKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDS-----EIVTFMVN 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S ++ +++ + +Y++MPM I Sbjct: 348 KDSSPTMVKEIERE---------DYYYIIMPMSI 372 >gi|307719923|ref|YP_003891063.1| DNA polymerase III subunit beta [Sulfurimonas autotrophica DSM 16294] gi|306978016|gb|ADN08051.1| DNA polymerase III, beta subunit [Sulfurimonas autotrophica DSM 16294] Length = 355 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 103/350 (29%), Positives = 173/350 (49%), Gaps = 33/350 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 MKITV +S + +L HA +E+K+T ++ HV + ++ L +KA+ EI + Sbjct: 1 MKITVSKSILENILIHASPFLEKKDTSQITSHVYMNVSNSELTLKATDYEIGFLVSTDNL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN-----ISHGDSNFYLQSFP 114 ++ GSIT + DIVR L+D +E+ EV IS G SNF L +F Sbjct: 61 KIEKEGSITANGKKFLDIVRILKD---------DEINLEVKNDNLLISQGHSNFKLPTFS 111 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +EFP E + S L +++ A+ T ++ LNG I + + Sbjct: 112 YNEFPEFPAYEGKPRISIESHTLIESLKKITPAIDTNNPKFELNGALIDIQKNSINFA-- 169 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD RLAV +D Q SII+P+KA+ EI ++ ++++ E+ + ++ + Sbjct: 170 ATDTRRLAVVTID--NQSDNELSIIIPKKAIVEIQKLFF---DNIELYYDETNLIIHSQQ 224 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293 + +LI+G+FP Y +IP KE + N L +A+ SI I +K++ +D Sbjct: 225 YTFFTKLINGKFPEYSRIIP----KETKYNLV-LPKAIMIDSIKQITTISTDLKITFMND 279 Query: 294 KL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + ++ DN + I S N +++ P I N KYLL+ +++I+S E Sbjct: 280 IISFESLSDDNIEAKTEI-SYNTGFSK-PFSIAINSKYLLDFLNSINSSE 327 >gi|258510022|ref|YP_003183456.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476748|gb|ACV57067.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 374 Score = 113 bits (282), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 21/331 (6%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 ++ A D L I+ P E TG V G+I + A DIVRKL D +I + Sbjct: 42 IVATAYDLELAIQTRVPVGEETGL---RVHQTGAIVLPARYFGDIVRKLPD-TEIHMRVD 97 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 TE IS F+L EFP S ++ +S L L+E T FA AT E Sbjct: 98 ANYMTE--ISAQSVEFHLHGIDAEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSE 155 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILR 210 +R L G+ I + L +ATDG RLA V A +P +++P K++ E+ + Sbjct: 156 VRPVLTGV--SITSDPTHLTFIATDGLRLAQHRVPQ----ADLPERQVVIPAKSLSELSK 209 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 IL ++SV++ L+ S I RL++G +P+ +IP S ++ ++ Sbjct: 210 ILPEDETSVEMVLTPSHGLFVIGPTRFYTRLLEGTYPDTSRLIPRSARTQVVLDGDAFLH 269 Query: 271 AVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKY 328 A+DR ++++ + V+L ++ D L +T +P++G E+++ E + I FN +Y Sbjct: 270 AIDRAALIARDKDNHMVRLEVTGDTLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRY 329 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 ++E + + + E+ R + +N + I Sbjct: 330 VIEAVRALDA-----AEIAIRFNGANQAFVI 355 >gi|313157008|gb|EFR56440.1| DNA polymerase III, beta subunit [Alistipes sp. HGB5] Length = 374 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +V S +L LL ++I KNT+P+ + L++ + L++ S E + G+I Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELSGNELKVTTSDLETTLIGSITVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 SV+ G+I A L+ D +++ + N+ E+ I+ + + +P Sbjct: 61 SVESEGTIAAPAKLMLDSLKEFSELPLT--IDVNDKNWEITINWKSGSLSIPGASAVSYP 118 Query: 120 STKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + + E+ S ++ + L N + +T FA A +E+R +NGI+ IN L V T Sbjct: 119 AVPQLSAEKKELSMDVDT--LVNGINKTIFATADDELRPVMNGIY--INLAPGALTFVGT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+L E + ++ S I+P+K + +L +D ++++S ++S + Sbjct: 175 DAHKLVKYESETANEVTA--SFILPKKPANLLKSVLLKEDDAIEMSFDSKNALFKLKSHT 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLI+G +PNY VIP +N ++ V+ L + RV++ S+ +++ + +++ Sbjct: 233 LVCRLIEGNYPNYNAVIPANNPNKVLVDRVELVNGIKRVAVCSNPTTNLIRMDIGDNRIN 292 Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T + D A E+++ Y+ + I F +L+EI+ N+ + V V+ DS+ + Sbjct: 293 LTAQDIDFSVSANETISCSYDGEEITIGFKSTFLVEILSNMDTPTV----VIELADSTRA 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VF K ++K + +LMPM I Sbjct: 349 GVF-----KPVYDDKQTS-STLMLLMPMMI 372 >gi|254456728|ref|ZP_05070156.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1] gi|207085520|gb|EDZ62804.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1] Length = 355 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 97/342 (28%), Positives = 175/342 (51%), Gaps = 17/342 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59 MKI V +S I +L +A +E+K+T ++ HV + ND L +KA+ EI Sbjct: 1 MKIIVSKSIIENILVYAQPFLEKKDTSQITSHVYINVNDSKLTVKATDYEIGFEVSTDKV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S+ GSIT + L DI+R L+DG +I+ +N++ ++IS SNF L +F +EFP Sbjct: 61 SIISTGSITANGKKLLDIIRILKDG-EINLEIKNDM---LHISQSHSNFKLPTFSYNEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + S L +++ A+ T ++ LNG I ++ + +TD Sbjct: 117 EFPSYEGKSRISIESHSLIESLKKITPAIDTNNPKFELNGALIDIKQDSINFA--STDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ V+I Q SII+P+KA+ EI ++ ++++ ++ + ++ + + Sbjct: 175 RLAI--VNIPNQSVSELSIILPKKAIIEIQKLFF---DNIELYYDDTNLIIHSDQYTFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 +LI+G+FP Y ++P L + + ++ +++ +SS V+I + ++ + L Sbjct: 230 KLINGKFPEYSRIVPKEVSNTLILPKAIMIDSIKQITTISSDVKITFLNNYITFESLS-- 287 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 D+ K S N + E P I N KYLL+ +++I+S E Sbjct: 288 -DDNIEAKTEISYNTGFEE-PFVIAINSKYLLDFLNSINSSE 327 >gi|325677519|ref|ZP_08157183.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC 33707] gi|325551766|gb|EGD21464.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC 33707] Length = 394 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 96/403 (23%), Positives = 178/403 (44%), Gaps = 34/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D + + R + + +PV VLL A++ L + E+ + A Sbjct: 6 MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V G + VS LL DI R L + K ++ GT V I+ G + F L + P + Sbjct: 66 VTTTGQVLVSGKLLADITRALPN-------KPVDVTVDGTRVLIACGSAKFSLPTMPVED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P + L + V + A ++ L GI I D+ L ATD Sbjct: 119 YPQLPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVLA--ATD 175 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKD-SSVKVSL-------SESRI 228 RLAV +++ + + +++VP + + E + L S V+++L +E + Sbjct: 176 RFRLAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLSPVELALGAGASVGTEGML 235 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + + RL+D EFP ++ ++P + V L A+ RV++++ R V+L Sbjct: 236 GIVADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVAE-RGAQVRL 294 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 +S+ L ++ D G+A E++ + P+ I FN YL++ ++++ S + V F Sbjct: 295 EFNSEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTF 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNA------FYVLMPMRI 385 + + +R ++ ++ A Y+LMP+R+ Sbjct: 350 GFTTPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392 >gi|304439077|ref|ZP_07398996.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372436|gb|EFM26023.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 358 Score = 112 bits (281), Expect = 7e-23, Method: Compositional matrix adjust. Identities = 94/344 (27%), Positives = 171/344 (49%), Gaps = 16/344 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + + A R + + T+ + +LL A D L + + ++ I + Sbjct: 1 MKFRASKQELSKHIQIAQRAVSSRTTMQILEGLLLIAKDNTLTLIGTDTDLTIISTMACI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + V++ L DI+RKL+D SF +NI +S+F + EFP Sbjct: 61 VEEEGEVVVNSRLFGDIIRKLED----SFVDITLKDLNLNIVCKNSDFNINCQSSKEFPR 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF + LK + +T FA++ EE R G+F E+ + VA DG R Sbjct: 117 NLNFEDKGSFTMKEEDLKEAIRKTTFAVSIEETRKIFTGVFMDCKED---ISFVALDGFR 173 Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A + I + PS I+P + E+ +IL S D VK+++ E +I + + Sbjct: 174 MARERIAISTE----PSESIIPANHLNELQKILGSGD--VKITIGERKILFETNNTKIYS 227 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 L GE+ NY+++I S+ E+++N + +++R S+++ R +KL+++ +++ ++ Sbjct: 228 TLYSGEYFNYKDLIRKSHTTEVKINREMFQTSIERASLLAKEERSNLIKLNIADNRVKIS 287 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 N ++G E + N +DI FN KYLL+ I + DE+V Sbjct: 288 -SNTEIGNVEEVLECEINGPGLDIAFNSKYLLDGIKIMDEDEIV 330 >gi|258506997|ref|YP_003169748.1| DNA polymerase III beta subunit [Lactobacillus rhamnosus GG] gi|257146924|emb|CAR85897.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus GG] gi|259648367|dbj|BAI40529.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus rhamnosus GG] Length = 379 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 85/342 (24%), Positives = 165/342 (48%), Gaps = 20/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A+ Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F ++ Sbjct: 61 DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + VL+ L+ +T A++ +E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + A II+P K++ E+ R+L + +++ ++E+++ Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++ SS + + L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP---MDICFNYKYL 329 + + ++PD+G E ++ +N+ ++I FN Y+ Sbjct: 296 GEQRATIYGNSPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 335 >gi|260101877|ref|ZP_05752114.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus helveticus DSM 20075] gi|260084305|gb|EEW68425.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus helveticus DSM 20075] gi|328468761|gb|EGF39732.1| DNA polymerase III subunit beta [Lactobacillus helveticus MTCC 5463] Length = 376 Score = 112 bits (281), Expect = 8e-23, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 163/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L D L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T+ I +S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQ--IVSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +F ++ + ++ T FA + ++ R L G+ F N ++K AVAT Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VK+ +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295 Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342 + GK+ E NV + N + I FN Y+ + + +D VV Sbjct: 296 TAKLS----GKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRASVTDSVV 345 >gi|161506636|ref|YP_001576584.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571] gi|160347625|gb|ABX26299.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571] gi|323465559|gb|ADX69246.1| DNA polymerase III Beta chain [Lactobacillus helveticus H10] Length = 376 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 95/354 (26%), Positives = 163/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L D L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +IV+KL G SF + T+ I +S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQ--IVSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +F ++ + ++ T FA + ++ R L G+ F N ++K AVAT Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VK+ +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 RL+DG +P+ +IP + + + L A++R S+++ R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295 Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342 + GK+ E NV + N + I FN Y+ + + +D VV Sbjct: 296 TAKLS----GKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRASVTDSVV 345 >gi|112789950|gb|ABI21619.1| Smu19B [uncultured organism] Length = 357 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 92/344 (26%), Positives = 164/344 (47%), Gaps = 14/344 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D+ + + + + + +PV +LL+ + G L + SG + E++ S Sbjct: 1 MKFRVARDDLADAVAWVAKSLPSRPPVPVLGGILLEVDGGTLTV--SGFDYEVSTRAELS 58 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 VD G + VS LL +I R L + F + G+ V+I G + F L + P ++ Sbjct: 59 VDAEDDGRVLVSGRLLSEITRALP-AKPVDFAVD---GSRVSIVGGSARFTLPTMPVDDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E S + S+ L V ++ A ++ L GI I + L L ATD Sbjct: 115 PPLPEMP-AGSGTVESAALAEAVAQSVVAAGRDDTLPMLTGIRVEIEGDKLTLA--ATDR 171 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLAV E+ M +++VP + + + + L +SV V+L + + L Sbjct: 172 FRLAVRELGWTPDTPDMSTAVLVPARTLSDAAKTLGGA-ASVIVALGDGLLGLQAGGRRT 230 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +VRL+D EF Y++++P + + V + L +A+ RV++++ R +++ ++ L + Sbjct: 231 TVRLLDVEFVKYRSLLPSEHTTTVDVPVSELVEAIRRVALVTD-RGHHLRMQVTDGLLTL 289 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 T D GKA E + V + + I FN YL++ + + S+ V Sbjct: 290 TAGGDDEGKAEEELPVEADGAELLIAFNPGYLIDGLGVLHSERV 333 >gi|146344353|ref|YP_001202209.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25] gi|146188165|emb|CAM96496.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25] Length = 369 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 100/394 (25%), Positives = 184/394 (46%), Gaps = 34/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ SD+ L R+ +RK T V H L+ + L + A + +++ IPA Sbjct: 1 MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59 Query: 61 VDVCG----SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPE 115 + ++ V A +V L A +S F E +L IS S F L + P Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEPKL----VISAARSRFTLATIPA 115 Query: 116 SEFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP + ++ +A S L V + F A ++R LNGI F + + L A Sbjct: 116 DHFPVMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTLAA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 DG RL V EV + + M + I+P + ++ + + + SV+VS S S E Sbjct: 176 --ADGLRLGVTEVPVTGE--PMQNFILPSSCIEDVCQFVGT--GSVRVSTSGSMARFTRE 229 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKEL-RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + +L++G+FP+Y+ ++ + ++ R+ A+ RV ++S + V+L++S+ Sbjct: 230 GGVLHTKLVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSA 289 Query: 293 DKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + + +V A + + YN P++I FN + EI+ ++ + E+ +V+F Sbjct: 290 ESISIQSVGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEI---DVIF--S 344 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S +R +D S + +VLMP+R+ Sbjct: 345 GAASGTLLRARDLPSHS---------FVLMPVRL 369 >gi|332980607|ref|YP_004462048.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON] gi|332698285|gb|AEE95226.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON] Length = 371 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 94/391 (24%), Positives = 192/391 (49%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT E+ D++ L A + + K IP+ +++++ D +K++ EI I + + Sbjct: 1 MIITCEKDDLVNALSIAEKALPSKTIIPMLNNIIIETVDDATHLKSTDTEISIDTVLNGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ ++ L DI R L Q++ ++ E +I G S ++ +FP Sbjct: 61 IIDQGSVALNGRLFIDIARSLPK-EQVTIKVDDH--NEASIKCGLSEISIKGMGTVDFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF ++S++ ++++ +T F++A ++ R L G +++ L +V DG+ Sbjct: 118 LPVISNGMSFNISSTIFRDMIRQTAFSIAPPDDNREVLTGELLKFENDEIMLVSV--DGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+++ +I + ++P KA+ E++RIL ++ + + + R I M+ Sbjct: 176 RISIRYEEISEIPDRQFEAVIPGKALMELMRILPPTQENLNIKIDDKRAAFTINGTVMTA 235 Query: 240 RLIDGEFPNYQNV-IP--CSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKL 295 +L++ +F NY+++ +P + VN +L A +R +++ + +KLS+S + Sbjct: 236 QLLNSKFINYEDILLPELSETKTTITVNRADLLSAAERAMLVAKEGKSSLIKLSISEHGM 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSN 354 +T N D+GK E + + N ++I FN +YL + + +VVDDE V+ + +S Sbjct: 296 VLT-SNADIGKVHEDIPIDINGSAIEIAFNGRYLTDPL------KVVDDEQVLMKFNSDV 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I D S Y+++P+R+ Sbjct: 349 SPCIIEPVDGKS---------FLYLVLPVRM 370 >gi|52142810|ref|YP_084019.1| DNA polymerase III subunit beta [Bacillus cereus E33L] gi|51976279|gb|AAU17829.1| DNA polymerase III, beta subunit [Bacillus cereus E33L] Length = 376 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 168/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDKQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S R V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASERANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ ++V + ++I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345 >gi|325969851|ref|YP_004246042.1| DNA polymerase III subunit beta [Spirochaeta sp. Buddy] gi|324025089|gb|ADY11848.1| DNA polymerase III, beta subunit [Spirochaeta sp. Buddy] Length = 368 Score = 112 bits (280), Expect = 9e-23, Method: Compositional matrix adjust. Identities = 87/384 (22%), Positives = 180/384 (46%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + IL + ++ ++N++ ++ +V L+ + L I+A+ ++ + I Sbjct: 1 MKFVCSKEAILTEIIYSMDFTSQRNSLSITSNVYLETYNDTLIIRATDQKLGFSTHIAVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TV L +I+R L D + F + + T +S + +F L++ EFP Sbjct: 61 TLKEGKTTVFCEKLLNILRSLPD-TNVEFTVVDGMFTIKPVSQ-NIDFKLRTITPEEFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + ++ +T FA++ +E RY+L G++ N + + VATDG R Sbjct: 119 LETAPEGRYFSVPQKAFSDMANQTMFAISEDETRYFLCGLYLERNASGMNM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ E ++ +I+ K E L+ LS+ + ++++ +++ + I + Sbjct: 177 LSIVERTFEEELPMFTPVIIAPKFFTE-LKKLSTDEGTLELCITDQLLFAKIAQRTFYTT 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI G++PNY+ VIP S + + ++ A+ RVS++ + + + L +S + +T D Sbjct: 236 LIKGQYPNYRRVIPDSQNYSCTMRIQDMLDALKRVSLLVENKAKRIFLDISEAGVLLTSD 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G+A E + Y + NY YLL + + + S N + + Sbjct: 296 ESEVGEAKEIIPCQYEGPDSKVSLNYTYLLNPLKAMEGEYF----------SINFTEPTK 345 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 S++N+D ++++MPM+ Sbjct: 346 AMTVKSESNRD----YYHIIMPMQ 365 >gi|282878678|ref|ZP_06287447.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310] gi|281299223|gb|EFA91623.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310] Length = 374 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 12/347 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ S + L ++I KN++P+ L D L I AS E + ++ Sbjct: 1 MRFTLSSSALNSRLQTLSKVINSKNSLPILDSFLFDIQDKQLNITASDSENVMRTSL--Q 58 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 +D C V + + D V++L + L ++ +G NF Q+ +E Sbjct: 59 LDECDGESKFAVPSRTILDAVKELPEQPLTFEVDVTNLTIQIQYQNGVYNFTAQN--AAE 116 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P ++ + + + +L + + R+ FA A +E+R +NGI+F + + L + VA+ Sbjct: 117 YPESQAIPDGATVITMNAGILNDNINRSLFATAQDELRPVMNGIYFDLTSDSLAI--VAS 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGH+L V + + S I+P+K + +L+ + + ++ S Sbjct: 175 DGHKL-VRNKNFKLKSETPASFILPKKPAMLLRNVLTKDEGDAVIKFDTKNAEIHYAGGS 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +S RLI+G +PNY +VIP N +L V+ L A+ R+ +S Q V+L L + KL Sbjct: 234 LSCRLIEGRYPNYNSVIPQDNPNQLTVDRKGLLGALRRILPFASESSQLVRLHLETGKLE 293 Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ ++ D A ES+ Y+ M+I F L EI+ N+ S++V Sbjct: 294 LSSEDIDFATSAKESIVCDYSGQTMNIGFKGSSLTEILTNLESEDVT 340 >gi|24209792|gb|AAN39856.1| DnaN protein [Salmonella enterica subsp. enterica serovar Agona] gi|24209794|gb|AAN39857.1| DnaN protein [Salmonella enterica subsp. enterica serovar Enteritidis] gi|24209810|gb|AAN39865.1| DnaN protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 167 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 6/157 (3%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP+ + Sbjct: 16 GATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDW 72 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV Sbjct: 73 QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVC 130 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV 221 + + A + S+IVPRK V E++R+L ++ ++V Sbjct: 131 SMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRV 166 >gi|294673576|ref|YP_003574192.1| DNA polymerase III subunit beta [Prevotella ruminicola 23] gi|294473619|gb|ADE83008.1| DNA polymerase III, beta subunit [Prevotella ruminicola 23] Length = 374 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/351 (26%), Positives = 163/351 (46%), Gaps = 20/351 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE------IEIT 54 M+ T+ + + L R+I KN +P+ L + + +L + AS E +E+T Sbjct: 1 MRFTLSSTALSSKLVALSRVINSKNALPILGDFLFEIENNVLHLTASDSENVMKTQLELT 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + D + H L + V+ + I+F + E V I++ + F L Sbjct: 61 ES-----DGNFRFAIGNHDLLEAVKGFSE-QPITFDVDLEQNL-VKITYQNGLFSLPVDN 113 Query: 115 ESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 EFP + ++ S L +++L + R+ FA A +E+R +NGI+F + + L Sbjct: 114 ADEFPVAQPVSDFAKSIVLPNAILAENINRSIFATAQDELRPVMNGIYFDLTPD--HLAV 171 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VA+DGH+L ++ + ++ PS I+P+K + +L V + E +N Sbjct: 172 VASDGHKLVRNKIFTIK--SEEPSAFILPKKPANLLKNLLGKDGGDVTIRFDERNAEVNY 229 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RLI+G +PNY +VIP +N E+R++ +L A+ RV ++ V+ + Sbjct: 230 GDGVLLCRLIEGRYPNYNSVIPQNNPNEVRLDRLSLLAALRRVQPFANDSSNLVRFHVEG 289 Query: 293 DKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ D K A E M YN PM I F +EI+ NI +V+ Sbjct: 290 STFQLDAEDYDFSKTATERMTCEYNGTPMSIGFKGNAFIEILGNIECSDVI 340 >gi|312874976|ref|ZP_07734995.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|311089721|gb|EFQ48146.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b] Length = 376 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP + Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 EDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|257789781|ref|YP_003180387.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243] gi|257473678|gb|ACV53998.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243] Length = 366 Score = 112 bits (280), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 187/389 (48%), Gaps = 28/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +S++ L + I ++T+P+ + L A+D L ++A+ E+ I ++ A Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V L +IV+ L D A + E++ I+ ++F +++ +FP Sbjct: 61 IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAV---ITCDTASFSIKTLDAEDFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + ++V+R ++ +E R L G+ I ED L VATD +R Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ A+ ++ + EI + S+D +K++L+E++I + R Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSDKLC 296 ++G FPNY+ ++P S + ++ +L V R S++ S VR ++++S + Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLLGQTSSPVRF---AINMASQTVQ 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ D+G A E+++ ++I FNY Y+L+ + ++S+D V + Sbjct: 291 LSAVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVSTDNVFLE------------ 338 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ K D N Y++MP+RI Sbjct: 339 --VQSSMKPGIFKADEGENFLYLVMPVRI 365 >gi|281419998|ref|ZP_06250997.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205] gi|281405798|gb|EFB36478.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205] Length = 360 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 92/333 (27%), Positives = 164/333 (49%), Gaps = 17/333 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYD 76 ++I KN++P+ L Q +G + I AS + I + + D G V ++ D Sbjct: 3 AKVIGSKNSLPILDCFLFQVANGEMSITASDSDNVIKSTLALTDHDGEGEFCVPNRVILD 62 Query: 77 IVRKLQDGAQISFFKENELGTEVNI----SHGDSNFYLQSFPESEFPSTKE-EEYVYSFE 131 +++L + Q F + G V I +G NF QS E+P T+ + + Sbjct: 63 ALKELPE--QPLHFDVDAAGEAVAIKIVYQNGLYNFTGQS--AEEYPRTQSMNDACTTVS 118 Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 L + +L N + R+ FA A++E+R +NGI+F + + L + VA+DGH+L ++ + Sbjct: 119 LPTEMLINNISRSLFATASDELRPVMNGIYFDLTADALAI--VASDGHKLVRSKNFTIK- 175 Query: 192 IAKMPSII-VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++ PS +P+K + ILS + + + M RLIDG +PNY Sbjct: 176 -SESPSAFNLPKKPASLLKNILSKDGDDAIIKFDDRSAEIQFTDGVMRCRLIDGRYPNYN 234 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIE 309 +VIP +N E+ V+ L+ A+ RV +S Q ++ + S + ++ ++ D A E Sbjct: 235 SVIP-NNPNEVTVDRRGLQSALRRVLPFASESSQLIRFHIESGRFEVSSEDIDFSTSAKE 293 Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ YN P+ I F L+EI+ N++SD ++ Sbjct: 294 QLSCEYNGSPISIGFKGSSLMEILSNLTSDNII 326 >gi|226303491|ref|YP_002763449.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4] gi|226182606|dbj|BAH30710.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4] Length = 394 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/402 (24%), Positives = 181/402 (45%), Gaps = 32/402 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R + + + R + + +PV VLL A + L + SG + E++ + S Sbjct: 6 LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTV--SGFDYEVSAQVRVS 63 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G VS LL DI + L + + E GT V IS G + F L + P ++ Sbjct: 64 ADVTTAGQALVSGRLLADITKSLPN-KPVDVTLE---GTRVLISCGSAKFSLPTMPVEDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P S + + + + A ++ L GI I + + L ATD Sbjct: 120 PQLPTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVLA--ATDR 176 Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 RLAV E++ A ++++P K + E + L+ +S V+++L N L Sbjct: 177 FRLAVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLG 236 Query: 237 M-------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + RL+D EFP ++ ++P + V T L +A+ RV++++ R V++ Sbjct: 237 IVNDGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVAE-RGAQVRMQ 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S+D L ++ D G+A E++N + + I FN YL++ ++++ S + V+F Sbjct: 296 FSADGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFG 350 Query: 350 LDSSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385 + + +R + +S N Y+LMP+R+ Sbjct: 351 FTTPSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 392 >gi|229491191|ref|ZP_04385019.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121] gi|229321929|gb|EEN87722.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121] Length = 403 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 100/402 (24%), Positives = 181/402 (45%), Gaps = 32/402 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R + + + R + + +PV VLL A + L + SG + E++ + S Sbjct: 15 LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTV--SGFDYEVSAQVRVS 72 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G VS LL DI + L + + E GT V IS G + F L + P ++ Sbjct: 73 ADVTTAGQALVSGRLLADITKSLPN-KPVDVTLE---GTRVLISCGSAKFSLPTMPVEDY 128 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P S + + + + A ++ L GI I + + L ATD Sbjct: 129 PQLPTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVLA--ATDR 185 Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 RLAV E++ A ++++P K + E + L+ +S V+++L N L Sbjct: 186 FRLAVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLG 245 Query: 237 M-------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + RL+D EFP ++ ++P + V T L +A+ RV++++ R V++ Sbjct: 246 IVNDGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVAE-RGAQVRMQ 304 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S+D L ++ D G+A E++N + + I FN YL++ ++++ S + V+F Sbjct: 305 FSADGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFG 359 Query: 350 LDSSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385 + + +R + +S N Y+LMP+R+ Sbjct: 360 FTTPSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 401 >gi|145221420|ref|YP_001132098.1| DNA polymerase III subunit beta [Mycobacterium gilvum PYR-GCK] gi|315441698|ref|YP_004074577.1| DNA polymerase III subunit beta [Mycobacterium sp. Spyr1] gi|145213906|gb|ABP43310.1| DNA polymerase III, beta subunit [Mycobacterium gilvum PYR-GCK] gi|315260001|gb|ADT96742.1| DNA polymerase III, beta subunit [Mycobacterium sp. Spyr1] Length = 398 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 98/402 (24%), Positives = 179/402 (44%), Gaps = 34/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R D + + R + + T+PV VLL +D L + E+ IPA Sbjct: 12 LKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIPAE 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + GS+ VS LL DIVR L + E GT V+++ G + F L + ++ Sbjct: 72 IASPGSVLVSGRLLSDIVRSLP-AKPVDVSVE---GTRVSLTCGSARFSLPTMAVEDYPT 127 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ +E V S +L + + A ++ L GI I+ E K+ ATD Sbjct: 128 LPTLPDETGVVSADL----FAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATD 181 Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIH 229 RLAV E+ +++VP K + E + + + V ++L E + Sbjct: 182 RFRLAVRELTWSAGAAGVEAAVLVPAKTLAEAAKA-GTDGTEVHLALGQGPTVGKEGLLG 240 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ Sbjct: 241 IRSKGKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVAD-RGAQVRME 299 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + D L ++ D+G+A E + V ++ P+ I FN YL + + ++ + + V F Sbjct: 300 FADDVLRLSAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHA-----ERVTFG 354 Query: 350 LDSSNSSVFIR--GKDKDSKNNKDN----KVNAFYVLMPMRI 385 + + +R G D S + + Y+LMP+R+ Sbjct: 355 FTTPSRPAVLRPAGDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396 >gi|325912232|ref|ZP_08174629.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D] gi|325475891|gb|EGC79060.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D] Length = 376 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP + Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 EDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|170077879|ref|YP_001734517.1| DNA polymerase III subunit beta [Synechococcus sp. PCC 7002] gi|169885548|gb|ACA99261.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7002] Length = 394 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 96/408 (23%), Positives = 190/408 (46%), Gaps = 39/408 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK +SD+ L R + + T P+ +VLL A N +++ A + I + P Sbjct: 1 MKFVCSQSDLNSQLSLVGRAVPSRPTHPILGNVLLTADANRHQIQLTAFDLSLGIRTSFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115 A V G++T+ A LL DIV +L +G + L + ++ F ++ Sbjct: 61 AQVIEGGTLTLPAKLLNDIVSRLPEGEVTLSCPSDTLMKGDAQATLTAATGRFQIRGMGA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP + L + L + FA + +E + L G+ +++ L+ A Sbjct: 121 EEFPELPTIQDGKKLMLPAIALSEGLGGVLFAASPDETKQVLTGVHLTHHQDCLEFAA-- 178 Query: 176 TDGHRLAVAEV-DIVA------QIAKMPS-------IIVPRKAVGEILRILSSKDSS--V 219 TDGHRLA+ E D V+ + K+P+ + +P +A+ E+ R+L++ + + + Sbjct: 179 TDGHRLALVETSDQVSPEPESSETGKLPTSTLEDFALTIPARALRELERMLTTANEADLI 238 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + L +S++ + ++ R +DG +P Y +IP +++ + L +++RV++++ Sbjct: 239 ALHLDDSQVIFEVNHQHLTSRKLDGAYPAYHQLIPRQFSRDVTLERRALISSIERVAVLA 298 Query: 280 SVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + VK L+S KL + V+ D+G E++ + ++I FN +YL++ + + Sbjct: 299 DQKNNIVKFRLNSAEQKLHLAVEAQDVGSGEEALPAQVSGTDLEIAFNVRYLIDGLKALP 358 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +E+ +L+ +N V V Y++MP++I Sbjct: 359 S-----NEIKMQLNENNQPVIF---------TPLGAVQMTYLIMPVQI 392 >gi|312137516|ref|YP_004004852.1| DNA polymerase III beta subunit [Rhodococcus equi 103S] gi|311886855|emb|CBH46163.1| DNA polymerase III beta subunit [Rhodococcus equi 103S] Length = 394 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/403 (23%), Positives = 178/403 (44%), Gaps = 34/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D + + R + + +PV VLL A++ L + E+ + A Sbjct: 6 MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V G + VS LL DI R L + K ++ GT V I+ G + F L + P + Sbjct: 66 VTTTGQVLVSGKLLADITRALPN-------KPVDVTVDGTRVLIACGSAKFSLPTMPVED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P + L + V + A ++ L GI I D+ L ATD Sbjct: 119 YPQLPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVLA--ATD 175 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKD-SSVKVSL-------SESRI 228 RLAV +++ + + +++VP + + E + L + V+++L +E + Sbjct: 176 RFRLAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLAPVELALGAGASVGTEGML 235 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + + RL+D EFP ++ ++P + V L A+ RV++++ R V+L Sbjct: 236 GIVADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVAE-RGAQVRL 294 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 +S+ L ++ D G+A E++ + P+ I FN YL++ ++++ S + V F Sbjct: 295 EFNSEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTF 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNA------FYVLMPMRI 385 + + +R ++ ++ A Y+LMP+R+ Sbjct: 350 GFTTPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392 >gi|227500985|ref|ZP_03931034.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227216758|gb|EEI82156.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 370 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 95/338 (28%), Positives = 171/338 (50%), Gaps = 21/338 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + D++ + A + + + I + + + D L +KA EI I + A Sbjct: 1 MKFRISQQDLMSAINIAMKAVSKSTNIQIHELIYFECFDNSLFLKAFDGEIAIKTKVDAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP-----E 115 VD G + V A L+ +IVRKL + I EN+ G ++NI SNF L +F E Sbjct: 61 VDEKGEMAVKASLIANIVRKLPNDIVIV---ENKDG-KINIKCSSSNFNLLAFDYFEKNE 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 P T + E+ + VLK + +T FA + +E + L GI F +D L VA Sbjct: 117 LSIPDT------LAIEIDNDVLKRSISQTEFATSLDETKLALTGILFEF--KDGFLNMVA 168 Query: 176 TDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DG+R+++ +V + S I+P++++ E RI+S D+ K+ +E+ + E+ Sbjct: 169 LDGYRVSLKKVKLEYPTDYEDSEYIIPKRSLLEWSRIVSD-DTKTKLYKNENDLIFVSEN 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 +M ++ID F +Y+N+I ++ + V+ L ++DR +++ R +K+ + SD Sbjct: 228 TTMQCKVIDKNFIDYRNIINDISETSIIVDKRELINSLDRAQVLADPGRANLIKIEI-SD 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 KL + N ++G E+++V ++I FN +Y+ E Sbjct: 287 KLMLIKSNSEIGDVREAIDVDQQGPDLEIAFNARYMQE 324 >gi|194097591|ref|YP_002000627.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] gi|193932881|gb|ACF28705.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] Length = 207 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 9/203 (4%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121 IT +A DI+R L GA +S + +N L + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPAADFPMM 119 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+ +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHR Sbjct: 120 NVGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRK 203 L A I A + + +I+PRK Sbjct: 178 LDYAACAIDADLPR-AEVILPRK 199 >gi|78776203|ref|YP_392518.1| DNA polymerase III subunit beta [Sulfurimonas denitrificans DSM 1251] gi|78496743|gb|ABB43283.1| DNA polymerase III, beta subunit [Sulfurimonas denitrificans DSM 1251] Length = 355 Score = 112 bits (279), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 97/351 (27%), Positives = 177/351 (50%), Gaps = 35/351 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAI 57 MKIT+++S I +L H+ +E+K+T ++ HV + A++ L +KA+ EI + T + Sbjct: 1 MKITIQKSIIENILIHSQPFLEKKDTSQITSHVFIDASNNKLTLKATDYEIGLIVSTDKL 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN-----ISHGDSNFYLQS 112 S D G++T + L DIVR L+DG E+ EV IS S F L + Sbjct: 61 NISQD--GNVTANGKKLLDIVRILKDG---------EINLEVKSDILYISQSHSKFKLPT 109 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F +EFP E + S L + +++ ++ ++ LNG I + ++ Sbjct: 110 FSYNEFPVFPMSEGKSRILIDSHSLIDSLKKITPSIDINNPKFELNGALIDIKQNNINFA 169 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +TD RLAV V+I Q + SIIVP+KA+ EI ++ ++++ E+ + ++ Sbjct: 170 --STDTRRLAV--VNIENQSSSELSIIVPKKAIVEIQKLFF---DNIELYYDENYLIIHS 222 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + +LI+G+FP Y +IP L + + +A+ +++ +S+ VK++ + Sbjct: 223 KEYTFFTKLINGKFPEYSRIIPKEIKNTLILQKAKMIEAIKQITTIST----DVKITFLN 278 Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 D + ++ DN + I S+ + P I N +YLL+ ++ I+S E Sbjct: 279 DTVIFESLSDDNIEAKTEINSITGF--TTPFTIAVNSRYLLDFLNTINSSE 327 >gi|33239453|ref|NP_874395.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33236978|gb|AAP99047.1| DNA polymerase III beta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 385 Score = 111 bits (278), Expect = 1e-22, Method: Compositional matrix adjust. Identities = 93/400 (23%), Positives = 187/400 (46%), Gaps = 32/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ + ++ L R + + + PV +VLL A+ G ++ +G ++ I ++ Sbjct: 1 MKLVCSQIELNTALQLVSRAVATRPSHPVLANVLLTADAGTGKLSLTGFDLNLGIQTSLS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS++ G+ITV + L +I+ KL + I+ ++ +VN+ N+ +++ +F Sbjct: 61 ASIESSGAITVPSKLFGEIISKLSSESSITLSTDDS-SEQVNLKSKSGNYQVRAMSADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E ++ ++ ++ T FA +T+E + L G+ LK + ATDG Sbjct: 120 PDLPMVENGAFLKVNANSFAVSLKSTLFASSTDEAKQILTGVNLCFEGNSLK--SAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSI---------IVPRKAVGEILRILSS--KDSSVKVSLSESR 227 HRLAV ++ V P I +P +++ E+ R LS DS + + + Sbjct: 178 HRLAVLDLQNVIASETNPEINNLSEKLEVTLPSRSLRELERFLSGCKSDSEISCFYDQGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 ++ R +DG +PNY +IP +L ++ A++R+++++ VK Sbjct: 238 FVFISSGQIITTRTLDGNYPNYNQLIPDQFSNQLVLDKKYFIAALERIAVLAEQHNNVVK 297 Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 +S + + L ++ D D+G ES+ + Y+ + I FN +YLLE + I + + Sbjct: 298 ISTNKELQILNISADAQDLGSGSESIPIKYDSEDIQIAFNSRYLLEGLKIIET-----NT 352 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + ++ + D + N Y++MP++I Sbjct: 353 ILLKFNAPTTPAIFTPND---------ETNFVYLVMPVQI 383 >gi|329769244|ref|ZP_08260662.1| DNA polymerase III [Gemella sanguinis M325] gi|328839335|gb|EGF88916.1| DNA polymerase III [Gemella sanguinis M325] Length = 379 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 171/354 (48%), Gaps = 18/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+E+SD LE L H R+I + + + L+ + L +KAS + + I A Sbjct: 1 MKFTIEKSDFLEGLNHVARVIAPNSLFEILKGIKLELSSNNLVLKASDSLVSVEFIIDAY 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ G + + + +I+RK A + + + + I G S F ++ Sbjct: 61 KDDKEIITIEEEGQVVLPSRNFIEIIRK----APTNLIEFESTDSFIKIHSGKSEFNIKG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + E+P S +L ++V +++ T F A + R L G+ F + + L Sbjct: 117 YDAMEYPEFPVISRENSLKLEATVFNDIIRETVFCTAPNDQRPILEGVNFSLKNK--ILT 174 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A ATD +RL+ +V + + A K ++I+PRKA+ R++ + V++ +RI L Sbjct: 175 ATATDSYRLSRRQVVLNDEDAEKEFNLIIPRKALTYFQRMIETGGDEVEIFYENNRIVLY 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 +++ +V LI G +PN + +IP + N AVDR+S+MS + +KL + Sbjct: 235 YQNVVYTVLLISGNYPNTEKLIPTMFECSFTANSREFFNAVDRISLMSREDKDDIIKLVV 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + L ++ D+G A+E + V + +I + KYL + + I+S+E+V Sbjct: 295 TEGNLEISSQAKDLGSAVEELQVNSKLEDDSFEISVSGKYLKDAVSAIASEEIV 348 >gi|300934348|ref|ZP_07149604.1| DNA polymerase III subunit beta [Corynebacterium resistens DSM 45100] Length = 394 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 100/399 (25%), Positives = 180/399 (45%), Gaps = 26/399 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ TV + D LG R + K T PV VL++AND L + E+ I A Sbjct: 6 VRFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFDREVSTQITINAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G I ++ L+ DIV L D KE T+V ++ G S F L + ++P Sbjct: 66 VDEPGRILIAGKLVNDIVGSLPDKPITLELKE----TKVLVTSGSSRFELPAMTIEDYPE 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V + + V + A ++ L G+ ++ E++ + A TD R Sbjct: 122 LPSLPGVTG-TIDPHLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTMAA--TDRFR 178 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLS-------ESRIHLN 231 LAV + AQ ++++P + + + R L ++ S +++++ + + + Sbjct: 179 LAVRTLQWNPAQADGQATLLIPARTLSDTARSLDAQSSDPIEIAVGSGDSIGQDGLLGIA 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 +S + RL+D EFP ++ ++P S+ V L+ A+ RVS+++ R +++ Sbjct: 239 TDSRHTTTRLLDAEFPKFRPLLPTSHTAVASVEIAPLQDAIRRVSLVAD-RNSQIRMQFE 297 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L ++ ++G A E + + P++I FN YL E + I + VV F L Sbjct: 298 EGSLTLSAGGSEVGSATEQLQCAFAGEPLEIAFNPGYLKEGLGAIHTPRVV---FGFTL- 353 Query: 352 SSNSSVFIRG----KDKDSKNNKDNKVNAF-YVLMPMRI 385 +S ++ I + D++ N F Y+LMP+RI Sbjct: 354 ASRPAIMIPDAGNLPEADAEGNFATPETDFTYLLMPVRI 392 >gi|325279749|ref|YP_004252291.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM 20712] gi|324311558|gb|ADY32111.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 167/355 (47%), Gaps = 27/355 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V + +L L ++I K P+ ++LL A +G+L AS E + I Sbjct: 1 MKFVVSSNTLLTRLQAVSKVIGGKPVQPILDNILLVATEGVLYATASDKETTMEARIELE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S++ G IT+ A +L DI+++ F E L E+N + + E P Sbjct: 61 SLEEEGKITIPAKILLDILKE---------FPEQPLTFEINTETNEVKIISEK-GEFSVP 110 Query: 120 STKEEEYVYSFELASS----------VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 E+Y L S +L+ +V +T FA A +++R +N I +NE++ Sbjct: 111 GESAEDYPIQAALNDSSNDLTSKCGLILEGIV-KTIFATANDDLRPVMNCILIEMNEDNF 169 Query: 170 KLCAVATDGHRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 VA+D H+L D ++ + S+I+P+K + IL DS +K+S ++ Sbjct: 170 TF--VASDAHKLVRYKRFDAKSENGQF-SLILPKKPALMLKNILPKDDSELKISFNDKMA 226 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 M+ L++G FPNY +VIP +N K++ + L ++ RVS+M++ VK Sbjct: 227 CFVFGDYKMTSTLVEGRFPNYNSVIPQNNPKKIIIEKKELYNSLRRVSVMANQASNLVKF 286 Query: 289 SLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ K+ ++ + D E++ Y + I F ++LEI+ NI S+ VV Sbjct: 287 DVAEGKIVISAQDMDYSMSGHETLTCQYEGENIAIGFKSPFVLEILSNIESENVV 341 >gi|312871279|ref|ZP_07731377.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|311093293|gb|EFQ51639.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a] Length = 376 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/375 (24%), Positives = 180/375 (48%), Gaps = 18/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP + Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ GSI + A +I++KL G SF ++ T+ I +S+F + Sbjct: 61 EDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N +++ A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKFATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK+ L+ + Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + +S + D +V + Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSK 367 + KD D K Sbjct: 351 PLRPFVVVPKDSDEK 365 >gi|195977158|ref|YP_002122402.1| DNA polymerase III subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973863|gb|ACG61389.1| DNA polymerase III beta subunit [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 378 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 175/352 (49%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 2 IQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITSTGAVLLEASFFINIISSLPD---VSLEFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 S++P +E L + +LK+++ T FA + +E R L G+ +++ +D K Sbjct: 118 KDVSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ + + A +++P K++ E + + +V+V S S++ Sbjct: 177 -AVATDSHRMSQRLITLEKTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ + E N +LR A++R ++S + + VKL + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++++ V++P++GK E ++V + I FN YL+E + I S+ V Sbjct: 295 EANRISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKSETV 346 >gi|194467404|ref|ZP_03073391.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23] gi|194454440|gb|EDX43337.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23] Length = 380 Score = 111 bits (278), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 92/342 (26%), Positives = 168/342 (49%), Gaps = 19/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M T+ RS + L + R I K TIP+ + + N+ + + S +I I I A Sbjct: 1 MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ G+I + A DIV+KL D +++ E G + +I+ G + F + Sbjct: 61 DADNDLTIEDTGAIVLPARFFSDIVKKLPD-KKVTI--EVTSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E S L + +LK ++ +T A++ +E R L G+ H+ +D L A Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGV--HMTLKDGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA +V ++ I +I+P K++ E+ ++S V++ ++E+++ Sbjct: 176 VATDSHRLAQRKV-VLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFI 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + RL++G +P +IP + D + + +++R S++S R VKLSL Sbjct: 235 FGNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSL 294 Query: 291 --SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYL 329 S + + ++ D+PD+G E + + ++I FN Y+ Sbjct: 295 KPSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYM 336 >gi|312142410|ref|YP_003993856.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus'] gi|311903061|gb|ADQ13502.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus'] Length = 371 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 80/344 (23%), Positives = 177/344 (51%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++E+ D+ + L R + + T+P+ + L+ +L +KA+ E+ I + Sbjct: 1 MKFSIEQKDLYKALNIVRRAVAKNKTLPILTGIYLKVEKNILSLKATDLELGIKYNVNVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS+ + A +I+R+L + +I NE ++ I+ +S F + F EFP Sbjct: 61 SEEEGSVVLPAMQFINIIRELPSEKIEIEL---NEDKWQLQINCLNSLFKINGFDPDEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E E F L ++ K+++E+ + + +E + L G F + E++++ V+T+ + Sbjct: 118 SLPEVEASAEFNLPAAKFKSMLEKVKISTSKDETQPALTGALFVVKAEEVRM--VSTNTY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ + + + ++ +I+P + E+ +L + S+ + + + + + Sbjct: 176 RLSYVDSPLKTNLDQIIEVILPGSTLDELNNLLED-EGSIDIVVDNNYARFEFAGIELIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ VIP + + + + + L AV R S+++ + A +S+S+D+ M + Sbjct: 235 RLIEGKFPNYELVIPDEFNSKFKADLSKLHGAVKRASLIA--KEDANIISISADEGIMEI 292 Query: 300 DNPD--MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + G A E +++ + I + YL++++ + S+E+ Sbjct: 293 NSTEGSAGYAHEELSIELSGPDQKINIDAGYLIDVLKVLDSEEI 336 >gi|312977116|ref|ZP_07788865.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05] gi|310896444|gb|EFQ45509.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05] Length = 369 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 21/345 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV----CG 65 ++E L + R I + TIP+ + L + L + S +I I IP + D+ G Sbjct: 3 LIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVNDDLNVESTG 62 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125 SI + A +IV+KL G SF + T++ IS +S F + + +P E Sbjct: 63 SIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDANNYPRLPEIP 119 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 SF ++ + ++ T FA + ++ R L G+ F + + +K AVATD HRL+ Sbjct: 120 DAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVATDSHRLSQRT 177 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + + +I+P K++ E+ RI+ D VKV +++ I +LS RL+DG Sbjct: 178 IALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLSFYSRLLDGN 237 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTVDNPDM 304 +P+ +IP + + + L A++R S+++ R V L+L + + Sbjct: 238 YPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQSAKLS---- 293 Query: 305 GKAIESMNVYYNEC-------PMDICFNYKYLLEIIDNISSDEVV 342 GK+ E NV + ++I FN Y+ + + +D V+ Sbjct: 294 GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 338 >gi|312865826|ref|ZP_07726048.1| DNA polymerase III, beta subunit [Streptococcus downei F0415] gi|311098701|gb|EFQ56923.1| DNA polymerase III, beta subunit [Streptococcus downei F0415] Length = 378 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 174/352 (49%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ ++ L R I KN IP+ + + + + + S +I I +I S Sbjct: 2 INFSINKAFFIQALNTTKRAISSKNAIPILSSLKIDVHSTGITLTGSNGQISIENSIATS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A+ +IV L D +S FKE E ++V ++ G S L+ Sbjct: 62 DENAGLLITETGSILLEANFFINIVSSLPD---VSLDFKEIE-HSQVLLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-L 171 ++P +E + VLK L+ T FA +T+E R L GI H+ D K Sbjct: 118 KDVEQYPRLQEVATSNPLIFDTKVLKTLIAETAFAASTQESRPILTGI--HLVLTDNKNF 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ I+ +++P +++ E + + + +V+V LS S+I Sbjct: 176 KAVATDSHRMSQRKL-ILENSGDNFDVVLPSRSLREFVAVFTDDIETVEVFLSGSQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 ES+S R+++G +P+ ++ + E+ + NLR A++R ++S + + VKL + Sbjct: 235 SESISFYARMLEGAYPDTDRLLVSDFETEILFDTNNLRSAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 K+ V++P++GK E ++ + + I FN YL+E + + S+ V Sbjct: 295 VDGKVSAHVNSPEVGKVNEEIDTLEIDGSDLTISFNPTYLIEALKALKSETV 346 >gi|225181146|ref|ZP_03734592.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1] gi|225168115|gb|EEG76920.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1] Length = 367 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 94/389 (24%), Positives = 189/389 (48%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TV ++ + E L + K+T+PV +L Q++ + + A+ E+ I + P Sbjct: 1 MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGIRTSFPVP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G + + A + +I+RKL D ++ +EN L I G S F L E+P Sbjct: 61 DQEKGEVVLPAKAV-EIIRKLPGDTVSLTVNEENFL---TEIKSGQSEFQLYGLSTEEYP 116 Query: 120 STKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + + + Y+ E+ + + + +T FA + +E + GI F + + L L + + Sbjct: 117 AFADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLSS--S 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D RLA + Q A +VP K + E++RIL++ + SV+++++++++ + +++ Sbjct: 175 DTFRLATTSCRVQNQGADG-VFLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIK 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +S RL+D FPN VIP V+ + AV+R S++S V+LS+ + L Sbjct: 234 LSSRLLDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLV 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + GK E + V + ++I N +++L+++ D+ + L ++N Sbjct: 294 IRASS-KFGKTQEHVPVELSGEGLEISLNSRFILDMLKVHEG-----DQCILELTNANKP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R DS + Y+++P++I Sbjct: 348 CILR----DSLYQE-----YLYLVLPIKI 367 >gi|312130942|ref|YP_003998282.1| DNA polymerase iii, beta subunit [Leadbetterella byssophila DSM 17132] gi|311907488|gb|ADQ17929.1| DNA polymerase III, beta subunit [Leadbetterella byssophila DSM 17132] Length = 374 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 6/343 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V +++L+ L + +I +P+ + L + + L + AS + + + + Sbjct: 1 MKFIVSSTELLKNLSYISGVIAPNPIVPILENFLFELDQNKLVVTASDMQTVMVAELDVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 SI + A LL D ++ L + + G E+ S G F + +FP Sbjct: 61 SSDVASIAIPARLLMDTLKSLPEQPITVNLNTDTFGVEIVTSTG--RFKITGENPLDFPR 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ EL S VL + T FA +T+++R + G+F I + VATDGHR Sbjct: 119 PPQVNKNFNIELNSDVLAAAINNTIFATSTDDLRPAMTGVFMDIQSDHTTF--VATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + Q + +I+PRKA+ + L S V S S + ++ + R Sbjct: 177 LIRYRRNDI-QSSTDNRLILPRKALNLLKSSLPSDVVPVVTEFSSSNAFFSFGNIKLICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y NVIP +N +L V + + R+SI S+ ++L + ++L ++ + Sbjct: 236 LIDERYPDYDNVIPKANPYKLIVERSTFLATLKRISIFSNKTTHQIRLKMEPNELTISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D +A+E + ++ ++I FN K+L E++ N+SS V+ Sbjct: 296 DLDYSNEAVEKIACEFDGELLEIGFNAKFLSEMLSNLSSSTVM 338 >gi|87123348|ref|ZP_01079199.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917] gi|86169068|gb|EAQ70324.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917] Length = 390 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 97/404 (24%), Positives = 194/404 (48%), Gaps = 35/404 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++P Sbjct: 1 MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G++T+ A LL +IV +L + ++ ++ G +V ++ + ++ P EF Sbjct: 61 ASVESSGAVTLPARLLGEIVSRLSSESPVTL-ASDDAGEQVELTSLSGCYQMRGMPADEF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L ++ L + T FA + +E + L G+ H+ L A +TDG Sbjct: 120 PELPLVENGTALKLEAAALARALRATLFASSADEAKQLLTGV--HLRFSGSHLEAASTDG 177 Query: 179 HRLAV-AEVDIVAQIAKMP------------SIIVPRKAVGEILRILSSKDSSVKVSLSE 225 HRLAV A D + + + S+ +P +++ E+ R+++S V+L Sbjct: 178 HRLAVLAVTDALREAPTLEGGEANDGEAADLSVTLPARSLREVERLVTSWKGDDPVTLFY 237 Query: 226 SRIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 R + + + V R ++G +PNY+ +IP S + ++ A++RV++++ Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDSFSRVFELDRRGFVAALERVAVLADQHN 297 Query: 284 QAVKLS--LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 V++S S + ++ D D+G ES+ + P+ I FN +Y+L+ + + + Sbjct: 298 NVVRISSEPESGLVQISADAQDVGSGSESLASDLSGEPVQIAFNVRYVLDGLKAMEA--- 354 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + R ++ + + D DS Y++MP++I Sbjct: 355 --DRIKLRCNAPTTPAVLSAADDDSGFT--------YLVMPVQI 388 >gi|300088050|ref|YP_003758572.1| DNA polymerase III subunit beta [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527783|gb|ADJ26251.1| DNA polymerase III, beta subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 376 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/391 (23%), Positives = 181/391 (46%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++ + ++ + L R ++T+P++ +VLL ++G L++ A+ E+ +T + A Sbjct: 1 MRLSCLQENLAKGLNIVGRAAAARSTLPITTNVLLATDEGRLKLSATNLEMAVTCWLGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS TV A L+ + + L N+ + + G + +FP Sbjct: 61 VEEEGSTTVPAKLMTEFIGSLPPEKVDMTLSGNK---TLTLKCGRFEARMTGVDAKDFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ + K V R FA AT+E R L GI + L L A DG R Sbjct: 118 VPRVENGVNAKVDVAEFKKGVARVVFAAATDESRPVLTGIDAEFDGSVLTLAAA--DGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSMS 238 LAV ++ + +++ I+P K +GE+ R+++ D S+ +++ +S+I ++++ + Sbjct: 176 LAVYKMTLSEPVSQKVKAIIPAKTLGEVSRLITDADESIGITVDTQKSQILFKLKNIELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------SS 292 +L+ G FP Y +IP S+ + ++ +A I + V+L + + Sbjct: 236 SQLLQGTFPQYSQIIPQSHSTRVVLDVAQFLRASRAAQIFARDGGGIVRLIMTPGSGKTP 295 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +L +T + ++G ++ + I FN KYLL+++ ++ +D+V + Sbjct: 296 GRLSITARSEEIGDDQAELDAAISGDEAKIAFNGKYLLDVLSVLT-----EDQVALEVTG 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +S +R D N YV+MPM Sbjct: 351 PSSPGVLRPVGSD---------NYIYVVMPM 372 >gi|303236008|ref|ZP_07322611.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN] gi|302483881|gb|EFL46873.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN] Length = 374 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/344 (26%), Positives = 168/344 (48%), Gaps = 8/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ T+ + + L R+I K+++P+ + A++ L I AS E+ + ++ Sbjct: 1 MRFTISSTALSSRLLSLSRVINSKSSLPILNCFVFDASNNQLAITASDSEVVVRMSLNLE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++D GS V+ + D V++L + +E ++ +G NF + + E P Sbjct: 61 TLDGNGSFAVNNQNILDAVKELPEQPLTVDVNMDEHMIYISYQNGSYNFPIVNSDEFPIP 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ S ++S +L + + R+ FA A +E+ +NGI+F + E L VATDGH Sbjct: 121 QSLSDD-ATSILISSDILVDNITRSLFATAQDELHPVMNGIYFDLTAE--SLAVVATDGH 177 Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +L I A + +P S I+P+K + ++ V V ++ Sbjct: 178 KLVRNR--IFALSSNVPASFILPKKPAALLKSFVAKGGGDVVVRFDSRSAEFTFADGNLI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++P Y +VIP +N ++ ++ +L A+ RV +S Q ++ +++ +L + Sbjct: 236 CRLIDGKYPKYNSVIPENNPYQITIDRKSLIGAIRRVLPFASDSSQLIRFHIANGQLDLN 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ D A ESM Y PM I F +LEI+ N+ S+EV Sbjct: 296 AEDIDFSTSAKESMTCSYEGNPMSIGFKGSSMLEILGNLQSEEV 339 >gi|67922001|ref|ZP_00515517.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501] gi|67856217|gb|EAM51460.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501] Length = 396 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/411 (24%), Positives = 193/411 (46%), Gaps = 43/411 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +SD+ L R + + T P+ +VL+ A+ + + ++ + S Sbjct: 1 MKFLCSQSDLNSNLSLVSRAVASRPTHPILANVLVVADSQKNRVSLTAFDLSLGLETSFS 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-----VNISHGDSNFYLQSF 113 DV G IT+ A LL +IV +L +G +I+ E E + V + F +++ Sbjct: 61 ADVSEDGKITLRAKLLNEIVSRLPEG-EITLMAEEEEDDDDDSQIVVLKSASGQFQVRAM 119 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 EFP E +L +L ++ FA +++E + L G+ + L+ A Sbjct: 120 NAEEFPPLPTVEEGELVQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEFAA 179 Query: 174 VATDGHRLAVAEVDIVAQI----------AKMP-----SIIVPRKAVGEILRILSSKDSS 218 TDGHRL+V E + + +MP ++ +P +A+ E+ R+L S+ S Sbjct: 180 --TDGHRLSVVETTLSPETDDEGNEQGESPEMPNLEGFAVTIPARALRELERMLGSRSES 237 Query: 219 VKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 ++L E+++ + ++VR +DG +PNYQ +IP + + + L +++RV+ Sbjct: 238 DTIALQVDEAQVVFQLGYQRLTVRKLDGAYPNYQMLIPQQFSRSICLERKRLLSSLERVA 297 Query: 277 IMSSVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 +++ + VK + S++ ++ ++VD D+G A ESM +I FN KYL++ + Sbjct: 298 VLADQKNNLVKCTFSNEDGQVSLSVDTQDLGSAKESMPAEVTGNSGEIAFNVKYLMDGLK 357 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ ++ +L+ N V + N + Y++MP++I Sbjct: 358 ALAT-----KDIKIQLNEGNQPVIL---------NPLGGLQMTYLVMPVQI 394 >gi|224372072|ref|YP_002606444.1| DNA polymerase III subunit beta [Nautilia profundicola AmH] gi|223589002|gb|ACM92738.1| DNA polymerase III, beta subunit [Nautilia profundicola AmH] Length = 350 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 93/348 (26%), Positives = 173/348 (49%), Gaps = 30/348 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I +E+ I +L E+K+ ++ H+L++AN+ L+ +KA+ EI I A Sbjct: 1 MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIKANEKLI-LKATDKEIGIKVITNAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPESE 117 + G++T++ DI++ LQ+ KE E+ TE N I+ S + L SF SE Sbjct: 60 IIEPGTVTINGKRFLDIIKTLQN-------KEIEIKTEENQITITQDSSIYKLTSFNASE 112 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + + ++ + L +++ + + +Y LNG F + E K V+TD Sbjct: 113 FPEFPNTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDLGE---KTNFVSTD 169 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLAV A+ +K IIVP++++ EI R++ +++ + + L + Sbjct: 170 TRRLAVYYSKAKARDSK---IIVPKRSIAEIKRVIRD---DMQIFYDDVYLILKNNEILF 223 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LI+G+FP Y+ +IP S EL + + +VSI+S+ VK+++ +DK+ Sbjct: 224 FTKLINGKFPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISN----EVKITIKNDKIIF 279 Query: 298 TVDNPDMGKAIESMNVYYNECPM-DICF--NYKYLLEIIDNISSDEVV 342 + + +A S ++ P+ D F N +Y+++ ++ I +D V Sbjct: 280 ESISDETMQAKTSFDL---NTPLEDFTFAVNSRYIMDFLNVIENDTFV 324 >gi|225867619|ref|YP_002743567.1| DNA polymerase III, beta chain [Streptococcus equi subsp. zooepidemicus] gi|225700895|emb|CAW97554.1| DNA polymerase III, beta chain [Streptococcus equi subsp. zooepidemicus] Length = 378 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 175/352 (49%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 2 IQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITSTGAVLLEASFFINIISSLPD---VSLEFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 S++P +E L + +LK+++ T FA + +E R L G+ +++ +D K Sbjct: 118 KDISQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ + + A +++P K++ E + + +V+V S S++ Sbjct: 177 -AVATDSHRMSQRLITLDKTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ + E N +LR A++R ++S + + VKL + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLMKDFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 ++++ V++P++GK E ++V + I FN YL+E + I S+ V Sbjct: 295 EANRISAHVNSPEVGKVNEDLDVVSQAGSDLTISFNPTYLIEALKAIKSETV 346 >gi|49479172|ref|YP_036786.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330728|gb|AAT61374.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 376 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+ Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSV 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E ++I F+ ++++E++ I + + Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEVLKAIKEETI 345 >gi|54025936|ref|YP_120178.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152] gi|54017444|dbj|BAD58814.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM 10152] Length = 381 Score = 111 bits (277), Expect = 2e-22, Method: Compositional matrix adjust. Identities = 99/391 (25%), Positives = 177/391 (45%), Gaps = 20/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ V R D+ + R + + +PV L+A+D L I E+ I A Sbjct: 3 IRFRVARGDLADAATWVARSLPSRPPVPVLGGAHLRADDDGLTISVFDYEVSAQMRIAAE 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + VS LL DI + L + I+F G+ V I+ G + F L + P ++P Sbjct: 63 VAHDGEVLVSGKLLADITKALPNKPVDITFD-----GSRVLIACGSAKFSLPTMPVEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S ELA+ + V + A ++ L GI I+ ++ L A TD + Sbjct: 118 KLPDVP-ARSGELAADLFATAVSQVAVAAGRDDTLPMLTGIRVEIDGAEVTLAA--TDRY 174 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV ++ + + ++VP + + E ++ L S + ++++ +S L + Sbjct: 175 RLAVRTLEWSPTDPSVETQVLVPARTLAEAVKALESA-APARLAIDDSMFGLVNARRRTT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL+D EFP ++ ++P + V +L A+ RV++++ R V+L S D L ++ Sbjct: 234 TRLLDAEFPKFRQLLPKEHTSVATVFVPDLVDAIKRVALVAE-RGAQVRLEFSEDGLLLS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D G+A E++ + P+ I FN YL++ + + S V + + +V Sbjct: 293 AGGDDAGRAEEAVPAEFRGEPLTIAFNPGYLMDGLTALHSTSV----TLGFTTPTRPAVL 348 Query: 359 IRGKD---KDSKNNKDNKVNAF-YVLMPMRI 385 + D K+S F Y+LMP+RI Sbjct: 349 VPSGDVEVKESSGGFAALSGPFVYMLMPVRI 379 >gi|227543720|ref|ZP_03973769.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300908785|ref|ZP_07126248.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri SD2112] gi|227186288|gb|EEI66359.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300894192|gb|EFK87550.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri SD2112] Length = 380 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/342 (26%), Positives = 165/342 (48%), Gaps = 19/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M T+ RS + L + R I K TIP+ + + N + + S +I I I A Sbjct: 1 MNFTINRSAFISQLNNILRAISSKTTIPILTGLKMVVNKDNIVLTGSNSDITIESVINAN 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ G+I + A DIV+KL D +++ E G + +I+ G + F + Sbjct: 61 DAENDLTIEATGAIVLPARFFSDIVKKLPD-KKVTI--EVTSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E S L + +LK ++ +T A++ +E R L G+ H+ +D L A Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGV--HMTLKDGVLTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA +V ++ I +I+P K++ E+ ++S V++ ++E+++ Sbjct: 176 VATDSHRLAQRKV-VLENIDNSIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFI 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + RL++G +P +IP + D + + +++R S++S R VKLSL Sbjct: 235 FGNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSL 294 Query: 291 SSDKLCMTV--DNPDMGKAIES-MNVYYNECPMDICFNYKYL 329 + + + D+PD+G E + + ++I FN Y+ Sbjct: 295 KPSESLVRISGDSPDIGTVEEKVVTSALDGNDLEISFNPNYM 336 >gi|196032677|ref|ZP_03100091.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|218903815|ref|YP_002451649.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228927740|ref|ZP_04090788.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946302|ref|ZP_04108629.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122239|ref|ZP_04251453.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] gi|195995428|gb|EDX59382.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|218538894|gb|ACK91292.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228661088|gb|EEL16714.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] gi|228813352|gb|EEM59646.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831803|gb|EEM77392.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 376 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILQVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ ++V E ++I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGEKQLNISFDGRFMLDALRAIKEETV 345 >gi|30262664|ref|NP_845041.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames] gi|47527976|ref|YP_019325.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49185507|ref|YP_028759.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] gi|165869103|ref|ZP_02213763.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] gi|167632459|ref|ZP_02390786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|167637875|ref|ZP_02396154.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|170685339|ref|ZP_02876563.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|170704813|ref|ZP_02895279.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|177649679|ref|ZP_02932681.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190565349|ref|ZP_03018269.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227814502|ref|YP_002814511.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229604660|ref|YP_002866976.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] gi|254685252|ref|ZP_05149112.1| DNA polymerase III subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254722660|ref|ZP_05184448.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055] gi|254737705|ref|ZP_05195408.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254743118|ref|ZP_05200803.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B] gi|254752020|ref|ZP_05204057.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum] gi|254760541|ref|ZP_05212565.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia 94] gi|30257296|gb|AAP26527.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames] gi|47503124|gb|AAT31800.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49179434|gb|AAT54810.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne] gi|164715829|gb|EDR21346.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] gi|167514424|gb|EDR89791.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|167532757|gb|EDR95393.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|170130614|gb|EDS99475.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|170670699|gb|EDT21438.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|172084753|gb|EDT69811.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190563376|gb|EDV17341.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227007484|gb|ACP17227.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229269068|gb|ACQ50705.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] Length = 376 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R+ L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E ++V + ++I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345 >gi|218291095|ref|ZP_03495118.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238980|gb|EED06187.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 374 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 21/331 (6%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 ++ A D L I+ P E TG V G+I + A DIVRKL D +I + Sbjct: 42 IVATAYDLELAIQTRVPVGEETGL---RVHKTGAIVLPARYFGDIVRKLPD-TEIHMRVD 97 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 TE IS F+L EFP S ++ +S L L+E T FA AT E Sbjct: 98 ANYMTE--ISAQSVEFHLHGIDAEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSE 155 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILR 210 +R L G+ I + L +ATDG RLA V A +P +++P K++ E+ + Sbjct: 156 VRPVLTGV--SITSDPTHLTFIATDGLRLAQHRVPQ----ADLPERQVVIPAKSLSELSK 209 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 IL ++ V++ L+ S I RL++G +P+ +IP S ++ + Sbjct: 210 ILPEDETPVEMVLTPSHGLFVIGPTRFYTRLLEGTYPDTSRLIPRSARTQVVLEGDAFLH 269 Query: 271 AVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKY 328 A+DR ++++ + V+L ++ D L +T +P++G E+++ E + I FN +Y Sbjct: 270 AIDRAALIARDKDNHMVRLEVTGDTLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRY 329 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 ++E + + + E+ R + +N + I Sbjct: 330 VIEAVRALDA-----AEIAIRFNGANQAFVI 355 >gi|257054091|ref|YP_003131923.1| DNA polymerase III subunit beta [Saccharomonospora viridis DSM 43017] gi|256583963|gb|ACU95096.1| DNA polymerase III, beta subunit [Saccharomonospora viridis DSM 43017] Length = 379 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 106/395 (26%), Positives = 178/395 (45%), Gaps = 28/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN----DGLLEIKASGPEIEI--T 54 MKI VER + E + R + + +PV VLL A DG + SG + E+ T Sbjct: 1 MKIRVERDGLAEAVAWVARSLPSRPPVPVLGGVLLDAGGDSGDGADTLTISGFDYEVSAT 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ-ISFFKENELGTEVNISHGDSNFYLQSF 113 +P+++ G VS LL DI + L AQ + E G V+I+ G++ F L + Sbjct: 61 AGVPSTIAEGGRTLVSGRLLADITKALP--AQPVDISVE---GARVSITCGNAKFSLPTM 115 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P ++P + + + E+A V + A ++ L G+ I L L Sbjct: 116 PVEDYPELPAQPEL-AGEVAGDAFAQAVAQVAVAAGKDDTLPMLTGMRVEITGSTLTL-- 172 Query: 174 VATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD RLA+ E A+ +++VP + + + + L S ++V++ L+ L + Sbjct: 173 VATDRFRLAMREFSWQPAEGITDSAVLVPARTLADAAKSLGSAGTTVQIGLAGGDGLLGL 232 Query: 233 ESLS--MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + RLID EFP Y+ ++P ++ L +A+ RVS+++ Q V+L Sbjct: 233 SGGGKFTTTRLIDAEFPPYRQLLPSDYSSRAILHVPALTEAIKRVSLVAERGTQ-VRLEF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L + D G A E + V Y P+ I FN YL + + + ++ E+ F Sbjct: 292 EDGSLRLAAGGDDEGSAEEELPVDYEGEPVTIAFNPSYLADGLGALHAERA---ELTFT- 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N I+ D +N + Y+LMP+R+ Sbjct: 348 -TPNRPALIKPAD----DNGEVVPGYLYLLMPVRL 377 >gi|228933970|ref|ZP_04096813.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825666|gb|EEM71456.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 380 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 5 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 65 IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R+ L G+ HI + KL Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGV--HIELDHNKLI 178 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 179 CAATDSHRLAIRETLISTNMK--ANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296 Query: 292 SDKLCMTVDNP-DMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E ++V + ++I F+ +++L+ + I + V Sbjct: 297 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 349 >gi|313678902|ref|YP_004056641.1| DNA polymerase III subunit beta [Oceanithermus profundus DSM 14977] gi|313151617|gb|ADR35468.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM 14977] Length = 361 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 17/342 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + E LG RII + + P H+ + +G L ++ S E+++ +PA Sbjct: 1 MQVRLPKRTFAEALGMLERIIPGRASNPALTHLRFEVAEGGLRLQGSNGELDLELVVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 V+ V L+ +VR L G + ELG E + I G L + +E Sbjct: 61 VEGEAVRLVPGQLIGQVVRNLP-GELV------ELGLEEGQLTIESGSFATRLTTADPAE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E + L + L + R +A + E+ R G+ ++ +L +VA+D Sbjct: 114 FPPLAFEAETVA-RLPARELGRALARVRYAASGEDYRAIFRGVQLELH--PTRLRSVASD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G RLA+ ++++ + +VP ++V EI+R+L + V + L + L E M Sbjct: 171 GFRLALYDLELALDAER--KFVVPARSVDEIVRVLERTEGEVALGLLGGHLTLAAEGFRM 228 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L++GEFP+Y+ VIP E ++ T L+ ++ RV +++ V L +L + Sbjct: 229 AAALMEGEFPDYERVIPPEFALEAEIDATALKDSLKRVKVLADRNNHRVDLVFEDGRLEV 288 Query: 298 TVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISS 338 + D G+ +E + V E M + +N +YL + I+ Sbjct: 289 VAEG-DYGRGVERLEVDARGEAQMVLAYNAEYLEGALGPIAG 329 >gi|309792259|ref|ZP_07686731.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6] gi|308225800|gb|EFO79556.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6] Length = 377 Score = 110 bits (276), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/367 (25%), Positives = 169/367 (46%), Gaps = 17/367 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ L + K+T+PV +VLL + G L++ A+ ++ IT I A Sbjct: 1 MKLTCLQENLKRGLATVSHAVAGKSTLPVLSNVLLATDGGRLKLAATNLDVGITHWIGAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV A LL D++ L + +V + SN ++ EFP Sbjct: 61 VQEEGAITVPAKLLADVIGGLPNDRVTLTLDARTQTVKVECARYTSN--IKGIEAEEFPI 118 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + L+ + L+ +++ FA A+++ R L G+ + E +L A DG Sbjct: 119 IPTVSDRAPAVSLSPATLREAIDQVAFAAASDDTRPVLAGVLVRLREN--RLTFAAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237 RLA V + +A+ IVP +++ E+ RI + + + +++S S + + E+ + Sbjct: 177 RLATRVVQLPEAVAQPQEFIVPARSLVELARIAADSEGQISLTMSPSGGQALFHTENTEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS------LS 291 RLIDG+FP+++ +IP ++ L +AV S ++ VKL+ L Sbjct: 237 VSRLIDGKFPDFERIIPSQYLTRSILDTAELAKAVKLASFFANPSQNVVKLTLEPGGELG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++ + ++G ++ + I N KYL + I I + +V + Sbjct: 297 PGRLVISANAAEVGDNTGEIDGMIHGEGGQIALNVKYLADAIAAIKTAQVALET----QG 352 Query: 352 SSNSSVF 358 S N VF Sbjct: 353 SQNPGVF 359 >gi|229011945|ref|ZP_04169125.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048] gi|228749359|gb|EEL99204.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048] Length = 376 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I+ L +C Sbjct: 117 LSANEFPNVPFLDSHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A ATD HRLA+ E+ I + AK+ + IVP + E+L+++SS + V + LSES I Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMSSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + + E ++I F+ +Y+++ + I +D V Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|148543245|ref|YP_001270615.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016] gi|184152657|ref|YP_001840998.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112] gi|227364308|ref|ZP_03848401.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3] gi|325683507|ref|ZP_08163023.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri MM4-1A] gi|148530279|gb|ABQ82278.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016] gi|183224001|dbj|BAG24518.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112] gi|227070621|gb|EEI08951.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3] gi|324977857|gb|EGC14808.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri MM4-1A] Length = 380 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 92/342 (26%), Positives = 168/342 (49%), Gaps = 19/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M T+ RS + L + R I K TIP+ + + N+ + + S +I I I A Sbjct: 1 MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ G+I + A DIV+KL D +++ E G + +I+ G + F + Sbjct: 61 DADNDLTIEETGAIVLPARFFSDIVKKLPD-KKVTI--EVTSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E S L + +LK ++ +T A++ +E R L G+ H+ +D L A Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGV--HMMLKDGVLTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA +V ++ I +I+P K++ E+ ++S V++ ++E+++ Sbjct: 176 VATDSHRLAQRKV-VLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFI 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + RL++G +P +IP + D + + +++R S++S R VKLSL Sbjct: 235 FGNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSL 294 Query: 291 --SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYL 329 S + + ++ D+PD+G E + + ++I FN Y+ Sbjct: 295 KPSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYM 336 >gi|289677551|ref|ZP_06498441.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 186 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 59/188 (31%), Positives = 110/188 (58%), Gaps = 14/188 (7%) Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +IVPRK + E+ R+L+ +D +V + L + I + + +L+DG+FP+Y+ V+P Sbjct: 13 VIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGG 72 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE 317 DK + + LR+A R +I+S+ + + ++L L+S +L + +NP+ +A E ++V YN Sbjct: 73 DKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYNG 132 Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377 ++I FN YLL+++ +++ ++V L SNSS ++ D D ++ Sbjct: 133 DSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALVQESDND---------DSA 178 Query: 378 YVLMPMRI 385 YV+MPMR+ Sbjct: 179 YVVMPMRL 186 >gi|317489244|ref|ZP_07947761.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325832265|ref|ZP_08165264.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1] gi|316911645|gb|EFV33237.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325486101|gb|EGC88555.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1] Length = 366 Score = 110 bits (275), Expect = 3e-22, Method: Compositional matrix adjust. Identities = 91/389 (23%), Positives = 187/389 (48%), Gaps = 28/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +S++ L + I ++T+P+ + L A+D L ++A+ E+ I ++ A Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V L +IV+ L D A + E++ I+ ++F +++ +FP Sbjct: 61 IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAV---ITCDTASFSIKTLDAEDFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + ++V+R ++ +E R L G+ I ED L VATD +R Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ A+ ++ + EI + S+D +K++L+E++I + R Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSDKLC 296 ++G FPNY+ ++P S + ++ +L V R S++ S VR ++++S + Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLLGQTSSPVRF---DINMASQTVQ 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ D+G A E+++ ++I FNY Y+L+ + ++++D V Sbjct: 291 LSAVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVNTDNVF-------------- 336 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ K D N Y++MP+RI Sbjct: 337 LEVQSSMKPGIFKADEGENFLYLVMPVRI 365 >gi|225869489|ref|YP_002745436.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi 4047] gi|225698893|emb|CAW91874.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi 4047] Length = 378 Score = 110 bits (275), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 172/351 (49%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 2 IQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A +I+ L D +S FKE E +V ++ G S L+ Sbjct: 62 NENAGLLITSTGAVLLEASFFINIISSLPD---VSLEFKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 S++P +E L + +LK+++ T FA + +E R L G+ +++ Sbjct: 118 KDVSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHK-NFK 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ + + A +++P K++ E + + +V+V S S++ Sbjct: 177 AVATDSHRMSQRLITLEKTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + +S RL++G +P+ ++ + E N +LR A++R ++S + + VKL + Sbjct: 236 DYISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIE 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 ++++ V++P++GK E ++V + I FN YL+E + I S+ V Sbjct: 296 ANRISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKSETV 346 >gi|229060366|ref|ZP_04197732.1| DNA polymerase III, beta subunit [Bacillus cereus AH603] gi|228718956|gb|EEL70573.1| DNA polymerase III, beta subunit [Bacillus cereus AH603] Length = 376 Score = 110 bits (274), Expect = 4e-22, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I+ L +C Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A ATD HRLA+ E+ I + AK+ + IVP + E+L++++S + V + LSES I Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + + E ++I F+ +Y+++ + I +D V Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNIAFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|227891670|ref|ZP_04009475.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC 11741] gi|227866473|gb|EEJ73894.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC 11741] Length = 379 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 176/353 (49%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R+ ++ L R I K TI + + + + L + S +I I I + Sbjct: 1 MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60 Query: 61 VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 D G++ + A +IV+KL + Q + NE + I+ G + F + Sbjct: 61 DDNAALQIEQEGAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P E + + +LK ++ +T A++ +E R L GI H+ ++ +L A Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I+P K++ E+ +++S D ++++ +SE++ + Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL-- 290 + S RL++G++P+ + +IP ++ + N L Q+++R S++S R VKL++ Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342 S+ + ++ + P++G E ++ E ++I FN Y+ + + + E+ Sbjct: 296 SAQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 348 >gi|307297361|ref|ZP_07577167.1| DNA polymerase III, beta subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916621|gb|EFN47003.1| DNA polymerase III, beta subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 367 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAI-P 58 MK RS+IL L + K+ P+ + +D ++++A+ E IT + P Sbjct: 1 MKFVAARSEILTRLESVSGAVAPKSVKPILSGIYFSMKDDSTVKLQATDLETAITTELRP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D + A L+ +IVR L +G ++ F E+ T V I G + F L + EF Sbjct: 61 KHIDGRCDFVIDARLVLEIVRNLPEG-EVVFETED---TNVIIREGSARFTLPTMDPEEF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + F ++ S ++ +++R F A +E LN +++ + L+L VA DG Sbjct: 117 PIVEPTSGGLEFTVSVSSIELMIDRVIFCAARDEFMRNLNSVYWEFEDGYLRL--VAADG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237 R+A++E I I ++ K++ ++ L + S + KV+ SR+ + + Sbjct: 175 FRMALSEERIDLSIDD--HFLLTLKSMKDLQNSLKAAMSDLLKVTYDGSRVQFLFDGTEI 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++D EFP+Y+ V+P S L ++ AV R SI + + +VK + ++ + Sbjct: 233 VTKVVDAEFPDYKKVLPKSFKARLVLSTEVFSDAVRRASIAARLGSDSVKFEIDDEQFKI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +PD G++IE ++ + I FN ++L E I SD V Sbjct: 293 VARSPDHGESIEILDANKEGDNIVIAFNPRFLSESAKKIDSDTV 336 >gi|90960992|ref|YP_534908.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118] gi|90820186|gb|ABD98825.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118] Length = 379 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 176/353 (49%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R+ ++ L R I K TI + + + + L + S +I I I + Sbjct: 1 MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60 Query: 61 VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 D G++ + A +IV+KL + Q + NE + I+ G + F + Sbjct: 61 DDNAALQIEQEGAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P E + + +LK ++ +T A++ +E R L GI H+ ++ +L A Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I+P K++ E+ +++S D ++++ +SE++ + Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL-- 290 + S RL++G++P+ + +IP ++ + N L Q+++R S++S R VKL++ Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342 S+ + ++ + P++G E ++ E ++I FN Y+ + + + E+ Sbjct: 296 SAQSVILSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 348 >gi|41406100|ref|NP_958936.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431485|sp|Q9L7L6|DPO3B_MYCPA RecName: Full=DNA polymerase III subunit beta gi|6969268|gb|AAF33689.1| putative dnaN [Mycobacterium avium subsp. paratuberculosis] gi|41394448|gb|AAS02319.1| DnaN [Mycobacterium avium subsp. paratuberculosis K-10] Length = 399 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 98/401 (24%), Positives = 177/401 (44%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL D L I E+ + A Sbjct: 13 LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DIVR L + I F+ + G V ++ G + F L + ++P+ Sbjct: 73 IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 128 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T EE + L + + + + A ++ L GI I+ + + L ATD Sbjct: 129 LPTLPEE---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230 RLAV E+ A + +++VP K + E R S V++SL + + + Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAART-GIDGSDVRLSLGAGAGVGKDGLLGI 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F Sbjct: 302 SEGSLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGF 356 Query: 351 DSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385 + +R D DS + +A Y+LMP+R+ Sbjct: 357 TTPGKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397 >gi|148927270|ref|ZP_01810840.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp. GTL1] gi|147887329|gb|EDK72783.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp. GTL1] Length = 366 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 96/398 (24%), Positives = 181/398 (45%), Gaps = 47/398 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + ++ + L R+ K +P+ ++LL+ ++ L + A+ EI IT I A Sbjct: 1 MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV A L+ + + L G + E G ++I+ G + + EFP Sbjct: 61 VAQNGAITVPARLMAEFISNLPKG-NVELSVE---GAHLHIAAGAYSSTINGMEAEEFPE 116 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T E +E+ + V+K V +T +++ R +L G++ H E DL ATDG Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFA--ATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL+ ++ + + K IVP + ++LR+L +V++ E+++ + + ++ Sbjct: 175 YRLSERKIGAMKEDLKX---IVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVT 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLC 296 RLIDG+F +Y+ +IP D + ++ R++ ++S+ R ++L +DK Sbjct: 232 SRLIDGQFVDYRQLIPKGAD----IASVLRKEEFSRITKIASLFARESGGSITLKTDKEK 287 Query: 297 MTVDNPDMGKAIESMNVYYNE----------CPMDICFNYKYLLEIIDNISSDEVVDDEV 346 T+ AI S+ E + N +YLLE + I + Sbjct: 288 GTL-------AIHSIASQLGENTSEAEAKVSADGQVTLNSRYLLEALGAIDG-----SSI 335 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 FR S + D ++ +++MP++ Sbjct: 336 TFRFSGKLSPCRLTATDDEATYQ--------HIIMPLK 365 >gi|291297540|ref|YP_003508818.1| DNA polymerase III subunit beta [Stackebrandtia nassauensis DSM 44728] gi|290566760|gb|ADD39725.1| DNA polymerase III, beta subunit [Stackebrandtia nassauensis DSM 44728] Length = 380 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 93/392 (23%), Positives = 180/392 (45%), Gaps = 23/392 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + + + + + + ++PV L+ +DG L I E+ +P + Sbjct: 1 MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVSSQVTLPVT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS VS LL +IV+ L + E G+ V I+ G + F L + P ++PS Sbjct: 61 SDASGSALVSGKLLAEIVKALP-AKPVDVAAE---GSHVEITCGSARFTLPTMPVEDYPS 116 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E V + + ++ V +T A ++ + G+ L L +ATD + Sbjct: 117 LPDMPEAVGTID--AAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLAL--LATDRY 172 Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSE------SRIHLNI 232 R+A+ ++ + + ++P KA+ + + L S+ V ++L + + Sbjct: 173 RMAIRDLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVGFAA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + R++DG+ P +++IP + ELRVN L RVS+++ R ++L++ Sbjct: 233 DGRRTTSRVLDGQLPPLRSLIPVTYAAELRVNAAELASVARRVSLVTE-RNSPLRLNVDG 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D L + + A E+M+ Y+ M + FN +YLL+ + IS+ VF Sbjct: 292 DGLVVEAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISA-----PVAVFSFTE 346 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V ++G DK + ++ + ++L P+R Sbjct: 347 PGKPVTLKG-DKANADDDGDFSGYTHLLQPLR 377 >gi|196040371|ref|ZP_03107672.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] gi|196028856|gb|EDX67462.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] Length = 376 Score = 110 bits (274), Expect = 5e-22, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E ++I F+ ++++E + I + + Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIKEETI 345 >gi|15612565|ref|NP_240868.1| DNA polymerase III subunit beta [Bacillus halodurans C-125] gi|13959350|sp|Q9RCA1|DPO3B_BACHD RecName: Full=DNA polymerase III subunit beta gi|5672648|dbj|BAA82686.1| 58%-identity [Bacillus halodurans] gi|10172614|dbj|BAB03721.1| DNA polymerase III (beta subunit) [Bacillus halodurans C-125] Length = 380 Score = 110 bits (274), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 172/354 (48%), Gaps = 18/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M ++R ++ + H + + + TIP+ + + A+ + + S +I I IP Sbjct: 1 MHFVIDRDIFVQNVNHVSKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDISIETFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A + +IV+KL + +I ++ T I G S F L Sbjct: 61 EGDRQNVEVKQEGSIVLQAKVFAEIVKKLPE-QEIEIHVQDSFVT--TIRSGSSVFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + F L +LK+++ +T FA++T+E R L G+ F I ED L Sbjct: 118 LDPDEYPRLPVLEEDHVFRLPQKILKDIIRQTVFAVSTQETRPVLTGVNFEI--EDGILT 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ +V + ++ ++++P K++ E+ +IL + + + ++E++ Sbjct: 176 CTATDSHRLAMRKVPVEKNDDELQFSNVVIPGKSLNELSKILDENEELLDIVVTENQTLF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 ++++ RL++G++P +N+IP V+ Q ++R ++S + Q + L Sbjct: 236 KLKNMLFFSRLLEGKYPVTKNMIPKEAKTSFAVHTKAFLQTLERALLLSREGKNQVINLK 295 Query: 290 LSSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 D + +T P++GK E++ E + I FN K +++ + + S+ + Sbjct: 296 TLGDGVVEVTAITPEIGKVTENVATQGLEGEELRISFNGKNVIDALKVVDSESI 349 >gi|300777078|ref|ZP_07086936.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium gleum ATCC 35910] gi|300502588|gb|EFK33728.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium gleum ATCC 35910] Length = 376 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 6/345 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + L +I + P+ + L + + + I AS E + ++ Sbjct: 1 MKFIISSGELQKALQTVSGVISSSQSRPILENYLFELDGNNVTITASDGETTLVTSLEVK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118 D G V A + D ++ + K+N GT ++ I NF + ++ Sbjct: 61 SDDTGKFAVPAKIFQDFIKTYGEQPLTFVVKDNAEGTGSQLEILDEKDNFAVALDNADDY 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + S + + VL + T FA + + +R + G+ F E + V+TD Sbjct: 121 PELPEFDASQSVTMPAGVLSEALTNTLFATSNDSLRPVMTGVLFQFGENETNF--VSTDS 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL V + + M I+P+K + IL+S + V + +E+ Sbjct: 179 HRLVVYKRADLMNAEPM-EFIMPKKPLNIFKNILASSNEDVTIDFNENMAKFTFGKHIWI 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY VIP N L +N L A+ R SIMS+ V+ LS + L + Sbjct: 238 CRLIDGKYPNYTAVIPKENPNVLTINRNLLLGAIKRASIMSNKSTNQVRFKLSGNILHLH 297 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + KA + YN ++I F+ K+L E++ + SD++ Sbjct: 298 AEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLTILGSDDIT 342 >gi|163940409|ref|YP_001645293.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4] gi|163862606|gb|ABY43665.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis KBAB4] Length = 376 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I+ L +C Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A ATD HRLA+ E+ I + AK+ + IVP + E+L++++S + V + LSES I Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPNSTISELLKLMNSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + + E ++I F+ +Y+++ + I +D V Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|324326663|gb|ADY21923.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 376 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 93/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIKKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILKVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDYNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ ++V + ++I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345 >gi|288926238|ref|ZP_06420164.1| DNA polymerase III, beta subunit [Prevotella buccae D17] gi|315606364|ref|ZP_07881380.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae ATCC 33574] gi|288337017|gb|EFC75377.1| DNA polymerase III, beta subunit [Prevotella buccae D17] gi|315252055|gb|EFU32028.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae ATCC 33574] Length = 374 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 90/347 (25%), Positives = 161/347 (46%), Gaps = 12/347 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ + + L R+I KN +P+ L Q + L I A E + A+ Sbjct: 1 MRFTLSSTALSSRLNTLARVINSKNALPILDCFLFQVENNRLLITAGDGENVMQSAL--E 58 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 +D C G V + D V++L + ++ +G NF Q+ E Sbjct: 59 LDSCEGEGEFAVPNRTILDAVKELPEQPLNFDIDTQSFAIKIVYQNGLYNFTAQN--AEE 116 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P + E+ + + ++VL + + R+ FA A +E+R +NGI+F + + L + VA+ Sbjct: 117 YPRMQPVEDGATTMTMDAAVLVDNISRSLFATAQDELRPVMNGIYFDLTPDALAI--VAS 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGH+L V + + + I+P+K + +LS V V ++ + Sbjct: 175 DGHKL-VRNKNFNIKSETPAAFILPKKPASLLKNVLSKDGGEVIVKFNDRSAEMRFSDGV 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLI+G +PNY +VIP N + ++ L A+ RV +S Q V+ + S ++ Sbjct: 234 LYCRLIEGRYPNYNSVIPQDNPNRVTIDRRALLGALRRVLPFASESSQLVRFHVESGRME 293 Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ ++ D A E + Y+ PM I F + EI+ ++ SDEVV Sbjct: 294 LSGEDIDFATSAKEQVTCEYSGQPMSIGFKGGSMQEILSSLESDEVV 340 >gi|293400057|ref|ZP_06644203.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306457|gb|EFE47700.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 372 Score = 109 bits (273), Expect = 6e-22, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 165/344 (47%), Gaps = 15/344 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V + + L A R I + +P V ++A L + S +I I + S Sbjct: 1 MYFKVSKKEFYNALSVAARAISTFSPLPAFSGVKIEATMDCLILTGSDSDISIQTKLKKS 60 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK+ D +I F E G+ IS + F + Sbjct: 61 EHCVLEIHDMGSIVIEAKYILEIVRKI-DADEIEF--EMLDGSLTKISGNTAEFRINGMR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 SE+P+ + F ++ +LK ++ +T FA + +E R L G+ F E L V Sbjct: 118 ASEYPAIDFSKPNECFNVSEDILKKIILQTSFATSDKETRPVLTGVNFQCKEHQLH--CV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA V+I + +I +P K++ E+++ L + V++++++ + I Sbjct: 176 ATDSYRLAKKTVEIEESLNF--NITIPAKSLQEVVKTLEG-EGDVEIAVNDKKAQFIIHD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K +LS + Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDAHDLLNAIDRASFIKNDGVSVIKFNLSEQE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNIS 337 ++ + ++G + E + + ++ ++I N +Y+ + I +S Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFSGNALEISCNGRYVFDAIKALS 336 >gi|226362896|ref|YP_002780676.1| DNA polymerase III subunit beta [Rhodococcus opacus B4] gi|226241383|dbj|BAH51731.1| DNA polymerase III beta subunit [Rhodococcus opacus B4] Length = 394 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 99/400 (24%), Positives = 177/400 (44%), Gaps = 28/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R + + + R + + +PV VLL A + L + E+ + A Sbjct: 6 LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI + L + + E GT V I+ G + F L + P ++P Sbjct: 66 VGSAGQVLVSGKLLADITKSLPN-KPVDVTLE---GTRVLITCGSAKFSLPTMPVEDYPQ 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + V + + A ++ L GI I + L ATD R Sbjct: 122 LPQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVLA--ATDRFR 178 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM- 237 LAV E++ A ++++P K + E + L+ +S V+++L N L + Sbjct: 179 LAVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIV 238 Query: 238 ------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+D EFP ++ ++P + V L +A+ RV++++ R V+L S Sbjct: 239 NDGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVAE-RGAQVRLQFS 297 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ L ++ D G+A E +N + + I FN YL ID +SS + ++V+F Sbjct: 298 TEGLLLSAGGDDAGRAEEGLNAVFQGESLTIAFNPGYL---IDGLSS--LHSEQVLFGFT 352 Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385 + + +R + DS N + Y+LMP+R+ Sbjct: 353 TPSRPAVLRPATEEEIEPDDSGNFAAPESAYTYLLMPVRL 392 >gi|228915297|ref|ZP_04078890.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844240|gb|EEM89298.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 380 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 5 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 65 IDDEQITTILQVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 178 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 179 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296 Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ ++V + ++I F+ +++L+ + I + V Sbjct: 297 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 349 >gi|256826462|ref|YP_003150421.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641] gi|256582605|gb|ACU93739.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641] Length = 365 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 94/388 (24%), Positives = 183/388 (47%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + D L + ++T+P+ + +L ++A+ ++ I +IPA Sbjct: 1 MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIPAF 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESEFP 119 ++ G + + LL D+V+ L + A E TE +I S+F L++F +FP Sbjct: 61 IEEEGEAVIPSKLLTDVVKSLPEAA-----VHVETTTETASIMCESSSFSLKTFDPQDFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + S ++V+R ++ +E R L G+ +++ L++ VATD + Sbjct: 116 GFPEVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVHDGMLRM--VATDSY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++D ++I + L LS S+ ++L+E++I + + + Sbjct: 174 RLAVTDIDFTTPSEDFTAVI--SGSFMSDLAGLSDTGESLTLALAENQIVVTYDGTTFIN 231 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297 R I+G +P Y +IP + + N L +AV R S++S+ + V+ + +S + + Sbjct: 232 RRIEGNYPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQI 290 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D+G+A E++ +I FN+ Y +ID +SS E + V L S Sbjct: 291 STASQDVGEAHETLGAKIQGEDEEIAFNFGY---VIDGLSSIET--ESVQLELQGSMKPG 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +++ N Y++MP+R+ Sbjct: 346 ILRATEQE---------NFLYLIMPVRL 364 >gi|324999883|ref|ZP_08120995.1| DNA polymerase III subunit beta [Pseudonocardia sp. P1] Length = 386 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 101/403 (25%), Positives = 181/403 (44%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55 MK VER + + R + + +PV VL+Q +DG E +G ++ ++G Sbjct: 1 MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIQ-SDGSDET--AGEKLTVSGFDYET 57 Query: 56 ----AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNF 108 + A+V G + VS LL DI R L K +L G I+ G+S F Sbjct: 58 SARVELDATVGEPGRMLVSGRLLADITRALPS-------KPVDLVVDGARATINCGNSRF 110 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L + P ++P + + +A+ L V + A ++ L GI I Sbjct: 111 SLPTMPVEDYPQLPDMPQ-KAGSVAADALAAAVAQVAVASGRDDTLPMLTGIRLEIEGSQ 169 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSLSES 226 L L A TD RLAV E++ + A + + +++P K + E+ + L+ + V +S + Sbjct: 170 LTLAA--TDRFRLAVRELEWSPEDASISTAVLIPAKTLAEVAKTLAGSGTVDVALSAGDG 227 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + L + RL+D EFP ++ +IP + + ++ L +A+ RVS+++ R+ + Sbjct: 228 MLGLTGGGRRSTSRLLDAEFPRFRQLIPAEHTTAVELDVAMLVEAIKRVSLVAD-RVAQI 286 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 ++ D L + D+G A E + + P+ I FN YLL+ + + +D ++ Sbjct: 287 RMEFGEDGLRLAAGGDDVGSAEEELPCALDGNPLTIAFNPGYLLDALGALHTDRA---QL 343 Query: 347 VFRLDSSNSSVFIRGKDK----DSKNNKDNKVNAFYVLMPMRI 385 F + N +R K D + K ++LMP+R+ Sbjct: 344 TF--TTPNRPALVRPVPKPATDDGEAPSPEKSGYLHLLMPVRL 384 >gi|313887623|ref|ZP_07821305.1| DNA polymerase III, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846232|gb|EFR33611.1| DNA polymerase III, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 364 Score = 109 bits (273), Expect = 7e-22, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 179/343 (52%), Gaps = 11/343 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R ++ + + + I ++ T+ + + + A + L + A+ EI I + A Sbjct: 1 MLIKVNRKELTKHISIVQKAISQRTTMQILEGIKISAKNNSLTLTATDTEISIKTELNAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I +++ L DI+RKL++ I+ EN + +N+ GDS F L + E+P Sbjct: 61 VEREGDIVINSRLFGDIIRKLENDI-ININVENYM---MNLKCGDSIFNLSTQKADEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S ++++ LKN+V++T FA++ +E R G+ I + + VA DG R Sbjct: 117 LPKVEENISIDISAKDLKNIVKKTTFAVSNDESRIVFTGVLMDIKKSYINF--VALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ ++ I SII+P +++ E+++I+ ++ +K+++S + I + Sbjct: 175 MAIQRLEKETGIEN--SIIIPSRSLNELVKIIDDEE-DLKLNISRNNIVFKFNNTVFYST 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L+ G+F +Y ++ + V+ + AV+R S+++ R +KL++ + + + Sbjct: 232 LLSGDFFSYSALLRDEHKISTSVSKREFQLAVERASLLAREDRANLIKLNVKENYIDIK- 290 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 N ++G E + ++ +DI FN +Y+L+ + + S+E+V Sbjct: 291 SNSEIGDVFEKVKTSEHDESLDIAFNSRYILDGVKILESEEIV 333 >gi|118478062|ref|YP_895213.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al Hakam] gi|196043398|ref|ZP_03110636.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|225864666|ref|YP_002750044.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|229184910|ref|ZP_04312101.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1] gi|118417287|gb|ABK85706.1| DNA polymerase III beta subunit family protein [Bacillus thuringiensis str. Al Hakam] gi|196025707|gb|EDX64376.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|225789614|gb|ACO29831.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|228598563|gb|EEK56192.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1] Length = 376 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLINSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ ++V + ++I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345 >gi|251794038|ref|YP_003008769.1| DNA polymerase III subunit beta [Paenibacillus sp. JDR-2] gi|247541664|gb|ACS98682.1| DNA polymerase III, beta subunit [Paenibacillus sp. JDR-2] Length = 380 Score = 109 bits (272), Expect = 8e-22, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 191/401 (47%), Gaps = 41/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK+++ + ++ E + + + TIP+ + ++ + + AS +I I IP Sbjct: 1 MKLSISKHELNEAIQQVAKAASSRPTIPILGGIKIEVTHQGVTLTASDTDISIQSFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVN--ISHGDSNFY 109 A+VD G++ + A +IV+KL D +I E+G I G ++ Sbjct: 61 RDDLVIANVDKPGNVVLPAKFFVEIVKKLPSDNVEI------EVGAHFQTLIRSGSTDIQ 114 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 + EFP E F++ +LK ++ +T A + E L G+ + + ++ L Sbjct: 115 MVGLDPEEFPVLPSIEQNELFQMPGDLLKAMIRQTVLAASVNEQTPILTGVLWSLQDKQL 174 Query: 170 KLCAVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 K VATD HRLA +A+ + A + ++++ K + E+ +++ + V + +++++ Sbjct: 175 KF--VATDRHRLASRIAQAETAADY-RFNNVVIAAKTLVELSKLVPDQHGLVDIVVADNQ 231 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + I ++ R++DG +P+ +IP EL ++ L A+DR +MS + V Sbjct: 232 VLFKIGNVLFYTRVLDGTYPDTSKIIPSVFKTELVLDTKKLTDAIDRAYLMSREEKTNIV 291 Query: 287 KLSLSSD-KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 +L+ D + ++ + ++G+ E + ++ P+ I FN KY+L+++ +V+D Sbjct: 292 RLATMEDGSIEISSSSTELGRVTEQLEPKQFDGEPLKIAFNSKYMLDVL------KVIDS 345 Query: 345 EVVF-RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 E +F + S + IR D S N YV++P R Sbjct: 346 EHIFIGFTGAMSPIVIRPTDH-SYNT--------YVILPYR 377 >gi|309776108|ref|ZP_07671099.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916059|gb|EFP61808.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 367 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 15/343 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + +I+ ++ RI +P + + AN + I S + + I Sbjct: 1 MNFKISKKEIVSVMNRISRIFAATVVLPAYRGIRITANTSGVSIVVSDGTVSMQEFIDTE 60 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +++ CG V L ++IV+K DG I KE +L + + + L F E ++ Sbjct: 61 IEIYECGECVVDGRLFFEIVKKAADG-MIWIRKEGKL---LKLKSNKAEMKLVIFAEEQY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV-ATD 177 P+ SF A+S L++ +++T F+ + ++ R L G+ FHI ++D C + +D Sbjct: 117 PNIDFSFPKNSFSAAASALEDAIDKTIFSASDQQTRPVLGGLNFHITKQD---CTITGSD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +RL+ + + Q K + +P+K + I S D + + SE + ++ ++ + Sbjct: 174 SYRLSRIVIPAIGQ--KESVLTIPKKMLSLFTDIFSG-DEELYLHFSERKALISSNNIVL 230 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 L++G FP+ +IP + L++ L A+DR + + + L L +D+L + Sbjct: 231 QSVLLEGAFPDTSKLIPNKFETALKLETEKLIDALDRTAFNKEDGVTIIGLELLTDELLI 290 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISS 338 T ++ ++G +IES+ E ++CF N +Y+LE + + S Sbjct: 291 TSESQEVGSSIESIEYIEVEGNQEVCFHCNQQYMLEALKALHS 333 >gi|169351631|ref|ZP_02868569.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552] gi|169291853|gb|EDS73986.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552] Length = 369 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 91/346 (26%), Positives = 172/346 (49%), Gaps = 13/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R +L L + + ++ +PV + +D L + S +I I I Sbjct: 1 MNFKIKRIKLLNALSKTTKAVSIRSPLPVLTGIKFDLHDDCLILTGSDSDITIQTKIIKD 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D+ G + +++ + DIVRK+ D I+ + G IS S F L Sbjct: 61 EDLTIYETGGVVLNSRYILDIVRKI-DSEYINIQILD--GALTRISSPTSKFDLNGTDIL 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + ++ S VLKN++ +T FA + +E + L GI F L+ C AT Sbjct: 118 DYPRIDLSKNGIKIDINSLVLKNIISQTKFAASDKEHKPILTGINFKATNNQLE-CT-AT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RLA V + + +I +P+K++ EI +I+ KD +++ +S+ ++ ++ Sbjct: 176 DSYRLAKKVVSLNEDVTF--NITIPQKSLDEISKIIE-KDEIIEMYVSDRKVLYVFDNNI 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLIDG FP+ +IP S D EL ++ L A+DRVS++++ + +KL + +++ Sbjct: 233 IQTRLIDGSFPDTNRLIPNSFDYELNIDTHYLLNAIDRVSLLTNEQNNIIKLDMDDNQVL 292 Query: 297 MTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ ++G E ++ +Y P+ I F+ KY+ E I +S ++ Sbjct: 293 LSSYMQEIGSVEEILDKAFYKGEPLSISFSSKYVNEAIRAFNSSKI 338 >gi|303233435|ref|ZP_07320103.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4] gi|302480443|gb|EFL43535.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4] Length = 369 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 172/353 (48%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V ++ + L CR + +NT+ + V + A++G L ++ + ++ I AI A+ Sbjct: 1 MKFSVSQTSFNQALSIVCRGLSSQNTMAILAGVYIHASEGTLTLQTTDLKVSIKHAISAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PE--SE 117 V+ GS+ VS LL IV+ L D A T+ ++ ++F L + PE E Sbjct: 61 VEEEGSVVVSGALLLKIVKNLPDAA----ITLTSTDTQAQLTCQKASFTLATLNPEDFPE 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + V EL +S+L ++V++ + L+GI +E KL ATD Sbjct: 117 FPVLNPNQVV---ELPTSLLTSMVDKVFRVTKDDIANPILSGITLVAHEN--KLSMYATD 171 Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL + + + + + + I+P A E+L + S D ++ + L +++I + E+ + Sbjct: 172 SHRLVIIDTSTETSSLTEEFNAIIPATAFHELLSLPSLTD-TITLGLCDNQIVFSCENTT 230 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDK 294 I+G FPN++N+ P + +L N T L + RV+++++ V ++ + Sbjct: 231 FVTLKIEGMFPNFKNLFPTTCATKLTCNPTELSAVIRRVALVTTNSDLGVVFDINPQTQT 290 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L + D+ + G + E V+ + NY+++ E + ++ + + E+V Sbjct: 291 LTLKADSVEYGTSQEEFAVHIEGASVQFSMNYQFITECTKSCTNKDEITFEIV 343 >gi|116074276|ref|ZP_01471538.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916] gi|116069581|gb|EAU75333.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916] Length = 390 Score = 109 bits (272), Expect = 9e-22, Method: Compositional matrix adjust. Identities = 85/361 (23%), Positives = 173/361 (47%), Gaps = 22/361 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G + +G ++ I + Sbjct: 1 MKLVCSQSELNSALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G++T+ A LL +IV +L + I+ ++ +V ++ ++ +++ P EF Sbjct: 61 ASVEASGAVTLPARLLGEIVSRLSADSPITLATDDA-SEQVELTSLSGSYQMRAMPADEF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + ++ L + T FA + +E + L G+ +L+ A +TDG Sbjct: 120 PDLPLVENGTALRVEAASLVQALRGTLFASSADEAKQLLTGVHLRFQARNLE--AASTDG 177 Query: 179 HRLAVAEVDIVAQ--IAKMP-----------SIIVPRKAVGEILRILSSKDSSVKVSLSE 225 HRLAV V Q + P ++ +P +++ E+ R+++ V+L Sbjct: 178 HRLAVLAVKDALQDDPSGAPDADTTTEDGVLAVTLPARSLREVERLIAGWKGDDPVTLFY 237 Query: 226 SRIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 R + + + V R ++G +PNY+ +IP + + + A++RV++++ Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDGFTRTIDLERRPFMAALERVAVLADQHN 297 Query: 284 QAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 V++S ++ + ++ D D+G ES+ M I FN +Y+L+ + + +D + Sbjct: 298 NVVRISTEPTAGLVQISADAQDVGSGSESLPATLVGDAMQIAFNVRYVLDGLKAMEADRI 357 Query: 342 V 342 V Sbjct: 358 V 358 >gi|301054217|ref|YP_003792428.1| DNA polymerase III subunit beta [Bacillus anthracis CI] gi|300376386|gb|ADK05290.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis str. CI] Length = 376 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I G+ L Sbjct: 61 IDDEQITTILQVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E ++I F+ ++++E + I + + Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIKEETI 345 >gi|254773055|ref|ZP_05214571.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length = 399 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 97/401 (24%), Positives = 177/401 (44%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL D L I E+ + A Sbjct: 13 LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DIVR L + I F+ + G V ++ G + F L + ++P+ Sbjct: 73 IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 128 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T EE + L + + + + A ++ L GI I+ + + L ATD Sbjct: 129 LPTLPEE---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230 RLAV E+ A + +++VP K + E R S V++SL + + + Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAART-GIDGSDVRLSLGAGAGVGKDGLLGI 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F Sbjct: 302 TEGSLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGF 356 Query: 351 DSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385 + +R D DS + +A Y+LMP+R+ Sbjct: 357 TTPGKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397 >gi|313681132|ref|YP_004058870.1| DNA polymerase iii, beta subunit [Sulfuricurvum kujiense DSM 16994] gi|313153992|gb|ADR32670.1| DNA polymerase III, beta subunit [Sulfuricurvum kujiense DSM 16994] Length = 355 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/374 (26%), Positives = 187/374 (50%), Gaps = 34/374 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 MKITV++S + +L H +E+K+T ++ H+LL + L KA+ EI I Sbjct: 1 MKITVDKSVLENILLHLQPFLEKKDTSQITSHILLSTDGRTLYAKATDYEIGLIIQTNSV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPES 116 +V+ GS+T + L DI+R L+D +E EL + ++I SNF L ++ S Sbjct: 61 NVEEPGSLTANGKKLLDIIRILKD-------EEIELTLDKDTLHIRQKRSNFKLPTYKSS 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP+ + + + S +L +++ A T ++ LNG I + V+T Sbjct: 114 EFPAFPTTDGKPNIAINSHLLIESLKKITPAADTNNPKFELNGALIDIKNNQINF--VST 171 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D RLA+ +D +Q SIIVP+KA+ EI ++ + ++++ + + + E Sbjct: 172 DTRRLALVHID--SQNDHELSIIVPKKAIIEIQKLFA---DNIEIFYDNTHLVIKSEDSL 226 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL- 295 +LI+G+FP+Y +IP + + + + + A+ +++ +S+ +KL+ SD + Sbjct: 227 FYTKLINGKFPDYSRIIPKEAQRTIVLPKSVIVTAIKQITTISN----DLKLTFQSDSIL 282 Query: 296 --CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ DN + +E N + E P + N +Y+L+ + +++ E F L+++ Sbjct: 283 FESLSDDNIEAKTTVEIENGF--ESPFILAINSRYILDFLSQVNATE-------FTLEAN 333 Query: 354 NSSVFIRGKDKDSK 367 S+ KD++ K Sbjct: 334 ESNQPFVLKDQNFK 347 >gi|309388283|gb|ADO76163.1| DNA polymerase III, beta subunit [Halanaerobium praevalens DSM 2228] Length = 370 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 79/344 (22%), Positives = 173/344 (50%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ + L R + + T+P+ + L ++ +L +K++ E+ I + Sbjct: 1 MKFSINQKELYKALNIVRRAVAKNQTLPILTGIFLSLDNNILTLKSTDLELGIKYDLKVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSI + A +I+R+L + +I K+ ++ I +S F + F EFP Sbjct: 61 GQVNGSIVLPATQFLNIIRELPNQKIEIDLNKDK---WQLEIKCLNSLFKINGFDPDEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E +F L + K ++++ + + +E + L G FF + E +K+ V+T+ + Sbjct: 118 NLPKVEDSANFSLPAKKFKEMIKKVRISTSKDETQPALTGAFFEVETEKVKM--VSTNTY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ E + +A+ ++I+P + E+ +L + D SV++ + + + + Sbjct: 176 RLSYIEAPLKTSVAEKIAVILPGSTLQELNNLLEA-DESVEIEVDNNYARFTFAGIEVIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ VIP ++ + + + L AV R S+++ + + L L+ D L M + Sbjct: 235 RLIEGKFPNYELVIPDESNSKFSADLSQLHGAVKRASLIAKLDANIITL-LAEDGL-MEI 292 Query: 300 DNPD--MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + G A E + + I + Y ++++ + ++E+ Sbjct: 293 NSAEGSSGYAHEELKIEIEGPKQKINIDAGYFIDVLKVLDAEEI 336 >gi|301300475|ref|ZP_07206674.1| DNA polymerase III, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851922|gb|EFK79607.1| DNA polymerase III, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 379 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 175/353 (49%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R+ ++ L R I K TI + + + + L + S +I I I + Sbjct: 1 MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60 Query: 61 VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 D G++ + A +IV+KL + Q + NE + I+ G + F + Sbjct: 61 DDNAALQIEQEGAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P E + + +LK ++ +T A++ +E R L GI H+ ++ +L A Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I+P K++ E+ +++S D ++++ +SE++ + Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL-- 290 + S RL++G++P+ + +IP ++ + N L Q+++R S++S R VKL++ Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342 S + ++ + P++G E ++ E ++I FN Y+ + + + E+ Sbjct: 296 SVQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 348 >gi|229167522|ref|ZP_04295260.1| DNA polymerase III, beta subunit [Bacillus cereus AH621] gi|228616084|gb|EEK73171.1| DNA polymerase III, beta subunit [Bacillus cereus AH621] Length = 376 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I+ L +C Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A ATD HRLA+ E+ I + AK+ + IVP + E+L++++S + V + LSES I Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMNSNANLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + + E ++I F+ +Y+++ + I +D V Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|319949430|ref|ZP_08023491.1| DNA polymerase III subunit beta [Dietzia cinnamea P4] gi|319436892|gb|EFV91951.1| DNA polymerase III subunit beta [Dietzia cinnamea P4] Length = 391 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 106/410 (25%), Positives = 182/410 (44%), Gaps = 46/410 (11%) Query: 1 MKIT-----VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55 M+IT V R D + + R + + ++P+ VLL+A+ GL SG + E + Sbjct: 1 MEITDPTFRVTREDFADSVAWVARTLPSRPSVPILGGVLLEADSGL---TISGFDYETSA 57 Query: 56 --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYL 110 ++PA V GS VS LL DI R L D + E+ ++ I+ G + F L Sbjct: 58 QVSVPAEVSEPGSTLVSGRLLADIARALPD-------RPVEVVVTAQKMYITCGSAKFTL 110 Query: 111 QSFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 + P ++P E S E+ V + A ++ L GI I E Sbjct: 111 PTMPVEDYPQLPAMPEVTGSAEV--DAFSEAVGQVVVAAGKDDTLPMLTGIRMEI--EGT 166 Query: 170 KLCAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----- 223 ++ +ATD RLA+ E D A+ +++P KA+ E+ R + V +SL Sbjct: 167 RVTLIATDRFRLAIREFDWEPAREDVTVEVLIPAKALSEVTRS-AGHGGRVDLSLGAGSN 225 Query: 224 --SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 +E + + + + RL+D EFP + ++P + V L QA+ RV++++ Sbjct: 226 VGAEGILGVLVSGQRTTTRLLDAEFPKVRQLLPPQHTSVAVVEVDALVQAIKRVALVADR 285 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +Q V+++ S +L ++ D +A ES+ V + P+ I FN YLL+ + +I S Sbjct: 286 GVQ-VRMAFSEGELALSAGGDDAAQANESLPVDFVGEPLTIAFNPGYLLDGLGSIHS--- 341 Query: 342 VDDEVVFRLDSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385 V F + +R + + D + Y+LMP+R+ Sbjct: 342 --ARVAFGFTQPSRPAVLRPAPEALPEPGADGAIAPVESDHTYLLMPVRL 389 >gi|126432615|ref|YP_001068306.1| DNA polymerase III subunit beta [Mycobacterium sp. JLS] gi|126232415|gb|ABN95815.1| DNA polymerase III, beta subunit [Mycobacterium sp. JLS] Length = 398 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 96/403 (23%), Positives = 182/403 (45%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R D + + R + + T+PV VLL +D L I SG + E++ + + Sbjct: 13 LKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTI--SGFDYEVSAEVRVA 70 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ GS+ VS LL DI + L + E GT V+++ G + F L + ++ Sbjct: 71 AEIASPGSVLVSGRLLSDITKALP-AKPVDVSVE---GTRVSLTCGSARFSLPTMAVEDY 126 Query: 119 ---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 P+ +E V +L + + A ++ L GI I E + L A Sbjct: 127 PALPTLPDETGVIGADL----FAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVLA--A 180 Query: 176 TDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESR 227 TD RLAV E+ + +++VP K + E + + + V ++L E Sbjct: 181 TDRFRLAVRELTWSTSSPDVEAAVLVPAKTLAEAAKA-GTDGTDVHLALGAGSAVGKEGL 239 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + E + RL+D EFP ++ ++P + + L +A+ RV++++ R V+ Sbjct: 240 LGIRSEGKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVAD-RGAQVR 298 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + + D L ++ D+G+A E + V ++ P+ I FN YL + + ++ S + V Sbjct: 299 MEFADDVLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVT 353 Query: 348 FRLDSSNSSVFIR-GKDKDSKNNKDN----KVNAFYVLMPMRI 385 F + + +R D+D+ + + Y+LMP+R+ Sbjct: 354 FGFTTPSRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396 >gi|313671972|ref|YP_004050083.1| DNA polymerase iii, beta subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938728|gb|ADR17920.1| DNA polymerase III, beta subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 368 Score = 108 bits (271), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 87/360 (24%), Positives = 176/360 (48%), Gaps = 12/360 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++++ +L +A I KNT + ++ + A +G + K + + Sbjct: 1 MKFKIIKNEVFYILQNAVNFISIKNTNTILQNIYISAENGKVVFKTNSILSGFCAEVDLD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ G+ TV L+DIV++ D A I FF + G+ + IS G +NF L + FP+ Sbjct: 61 VEMEGTTTVICKKLFDIVKEFSDSAIIEFFFD---GSRLKISSGQANFSLATMSPELFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + YS ++ SS L + +++T F +AT + G+ + L+L ++D R Sbjct: 118 MSDITPEYSLKIDSSQLADALDKTLFCVATNATKIEFTGLHLKVYGNKLELH--SSDFQR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 ++ A + + + + I +P+K +IL++L + ++V++ + L ++ + R Sbjct: 176 ISSAVITLPEEQSDEFIINIPKKTASDILKVL-DRTATVEIYTDLKQFMLVAGNIKIYSR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+ + + E+ V+ +L + +V +S+ A+ LSLSSD++ + Sbjct: 235 LIEKAVKSINTLFSSETPIEVVVDKNSLSDNIRKVLPISTEITHAIVLSLSSDQITVYTL 294 Query: 301 NPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + G+ + +N + + P+D+ N K LLEI+ +I + V+ +L + VFI Sbjct: 295 ETEYGQGFDKLNPIKFTGDPIDVILNGKLLLEILSHIDC-----NNVILKLSGRRNPVFI 349 >gi|94993398|ref|YP_601496.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10750] gi|94546906|gb|ABF36952.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10750] Length = 378 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ ++ L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIQALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|227514120|ref|ZP_03944169.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227087491|gb|EEI22803.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 379 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 173/353 (49%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT------ 54 MK T+ R+ + L + R + K+TIP+ + L ++ + + S +I I Sbjct: 1 MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60 Query: 55 -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 G +V+ G+I + A DIV+KL D Q++ + G + I G + F + Sbjct: 61 DGQYQLTVEEPGAIVLPARFFSDIVKKLPD-QQVTIAVTD--GFQAQIMSGTAEFVINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E SFE+A+ + +++ +T A++ +E R L GI H++ D L A Sbjct: 118 DANNYPHLPEIETAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + + +++P ++ E+ R++ VK+ +++++ Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 + RL++G +P+ +IP +++ + ++ + A++R S++S R VKL++ Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295 Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 V ++ D+G E++ E ++I FN ++ + + + +++ Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAKII 348 >gi|306834601|ref|ZP_07467713.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis ATCC 700338] gi|304423237|gb|EFM26391.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis ATCC 700338] Length = 378 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 180/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ +S L+ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 2 IKFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A+ +IV L D ++ F+E E ++ ++ G S L+ Sbjct: 62 NENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIE-HHQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 +P +E L + +LK+++ T FA + +E R L G+ +++ +D K Sbjct: 118 KDVDLYPRLQEMATENPLVLETKLLKSIIAETAFAASLQESRPILTGVHMVLSDHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ + + ++++P K++ E + + +V+V S+S++ Sbjct: 177 -AVATDSHRMSQRKLTL-ENTSNDFNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ + + E+ N LR A++R ++S + + VKL + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ + V++P++GK E ++ + + + I FN YL+E + + S+ VV Sbjct: 295 ANNSVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKSETVV 347 >gi|94989511|ref|YP_597611.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10270] gi|94543019|gb|ABF33067.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10270] Length = 378 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLENTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|312864131|ref|ZP_07724366.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396] gi|311100363|gb|EFQ58571.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396] Length = 378 Score = 108 bits (270), Expect = 1e-21, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A+ ++V L D F+E E +V + G S L+ Sbjct: 62 EENAGLLITRPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + VLK+++ T FA +T+E R L G+ F + N +DLK Sbjct: 119 DVEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ + +++P +++ E+ + S ++++ S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ +LR A++R ++S S + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNSSQSGTVKLEII 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKSETV 346 >gi|56808864|ref|ZP_00366575.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Streptococcus pyogenes M49 591] gi|71902669|ref|YP_279472.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS6180] gi|94987633|ref|YP_595734.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS9429] gi|94991499|ref|YP_599598.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS2096] gi|209558589|ref|YP_002285061.1| DNA polymerase III subunit beta [Streptococcus pyogenes NZ131] gi|71801764|gb|AAX71117.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS6180] gi|94541141|gb|ABF31190.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS9429] gi|94545007|gb|ABF35054.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS2096] gi|209539790|gb|ACI60366.1| Beta subunit of DNA polymerase III [Streptococcus pyogenes NZ131] Length = 378 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|288904225|ref|YP_003429446.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus UCN34] gi|306832485|ref|ZP_07465637.1| DNA-directed DNA polymerase III beta subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977202|ref|YP_004286918.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730950|emb|CBI12494.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus UCN34] gi|304425385|gb|EFM28505.1| DNA-directed DNA polymerase III beta subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177130|emb|CBZ47174.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 378 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 180/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ +S L+ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 2 IKFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A+ +IV L D ++ F+E E ++ ++ G S L+ Sbjct: 62 NENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIE-HHQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 +P +E L + +LK+++ T FA + +E R L G+ +++ +D K Sbjct: 118 KDVDLYPRLQEMATENPLVLETKLLKSIIAETAFAASIQESRPILTGVHMVLSDHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ + + ++++P K++ E + + +V+V S+S++ Sbjct: 177 -AVATDSHRMSQRKLTL-ENTSNDFNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ + + E+ N LR A++R ++S + + VKL + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ + V++P++GK E ++ + + + I FN YL+E + + S+ VV Sbjct: 295 ANNSVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKSETVV 347 >gi|161723112|ref|YP_288065.2| DNA polymerase III subunit beta [Thermobifida fusca YX] Length = 380 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 100/396 (25%), Positives = 180/396 (45%), Gaps = 29/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK VER + + + R + + ++PV +LL A+D G + S + E++ + Sbjct: 1 MKFRVERDVLADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVS 60 Query: 59 ASVDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 VD+ G I VS LL +IVR L + + G +V +S G + F + + P Sbjct: 61 VDVDIDEPGRILVSGKLLAEIVRNLPP----QTVEVSTDGAKVVVSCGSAKFTILTLPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P T + + S V + A ++ L G+ I + L V+T Sbjct: 117 DYP-TLPAMPALTGSVLSDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIH 229 D +RLAV E+ + + ++ +VP K + + + L+ + + ++LS E I Sbjct: 174 DRYRLAVRELTWTPEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIG 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + RL++GEFP Y+ ++P S + V +AV RVS+++ R ++LS Sbjct: 233 FEGGGRRTTTRLLEGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVAE-RNTPLRLS 291 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +SD+L + + +A+E ++ + I FN +LL+ ++ I S D + Sbjct: 292 FTSDRLVLEAGTGEEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIES-----DVAHLQ 346 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I GK D D + Y++MP+RI Sbjct: 347 FTTSTKPAIITGKPADDGTASDYR----YLIMPVRI 378 >gi|118465865|ref|YP_879305.1| DNA polymerase III subunit beta [Mycobacterium avium 104] gi|118167152|gb|ABK68049.1| DNA polymerase III, beta subunit [Mycobacterium avium 104] Length = 382 Score = 108 bits (270), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/395 (24%), Positives = 174/395 (44%), Gaps = 32/395 (8%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66 R + + + + + +PV VLL D L I E+ + A + GS Sbjct: 2 RESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEIASPGS 61 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEE 124 + VS LL DIVR L + I F+ + G V ++ G + F L + ++P+ T E Sbjct: 62 VLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPTLPTLPE 117 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E + L + + + + A ++ L GI I+ + + L ATD RLAV Sbjct: 118 E---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDRFRLAVR 172 Query: 185 EVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLS 236 E+ A + +++VP K + E R S V++SL + + ++ Sbjct: 173 ELTWSAASPDIEAAVLVPAKTLAEAART-GIDGSDVRLSLGAGAGVGKDGLLGISGNGKR 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ S L Sbjct: 232 STTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEFSEGSLR 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 291 LSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTPGKP 345 Query: 357 VFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385 +R D DS + +A Y+LMP+R+ Sbjct: 346 ALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 380 >gi|15674252|ref|NP_268425.1| DNA polymerase III subunit beta [Streptococcus pyogenes M1 GAS] gi|71909816|ref|YP_281366.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS5005] gi|13621327|gb|AAK33147.1| beta subunit of DNA polymerase III [Streptococcus pyogenes M1 GAS] gi|71852598|gb|AAZ50621.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS5005] Length = 378 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|219846975|ref|YP_002461408.1| DNA polymerase III subunit beta [Chloroflexus aggregans DSM 9485] gi|219541234|gb|ACL22972.1| DNA polymerase III, beta subunit [Chloroflexus aggregans DSM 9485] Length = 378 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/395 (23%), Positives = 173/395 (43%), Gaps = 32/395 (8%) Query: 1 MKITVERSDI---LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57 MK+T + D+ L + HA + + T+PV +VLL ++G L++ A+ E+ I I Sbjct: 1 MKLTCMQDDLKRGLAAISHA--VAGKSATLPVLANVLLATDNGRLKLTATNLEVGINRWI 58 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 A++ G++ V A LL D+V L + V SN ++ E Sbjct: 59 GANIAQAGAVAVPAKLLADVVGGLPNDTVTLTLDPKTQTLRVECGRFVSN--IKGVDADE 116 Query: 118 FPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FPS L + + + +E+ FA AT+E R L G+ + D +L VA Sbjct: 117 FPSLPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVL--VRTRDRQLTLVAA 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--NIES 234 DG RLA+ + + +A ++P + + E+ RI+ + V + + H+ + E+ Sbjct: 175 DGFRLAMRTIPLAETVAHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTEN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS----- 289 + RLI+G FP+++ +IP ++ T L +AV S +S VKL Sbjct: 235 TEVVSRLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAG 294 Query: 290 -LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + ++ ++ ++ ++G ++ I N K+L + I + S +++ F Sbjct: 295 EMGPGRIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGS-----NQIAF 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S+ S + D +++MPM Sbjct: 350 EMQSAQSPAVFKPVGHDGY---------IHIVMPM 375 >gi|50913348|ref|YP_059320.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10394] gi|139472890|ref|YP_001127605.1| DNA polymerase III subunit beta [Streptococcus pyogenes str. Manfredo] gi|50902422|gb|AAT86137.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS10394] gi|134271136|emb|CAM29346.1| DNA polymerase III, beta chain [Streptococcus pyogenes str. Manfredo] Length = 378 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|326802616|ref|YP_004320434.1| DNA polymerase III, beta subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326651483|gb|AEA01666.1| DNA polymerase III, beta subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 383 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 197/396 (49%), Gaps = 29/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T++RS ++ L + R I + TIP+ + + D + + S I I I Sbjct: 1 MKFTIKRSIFVDHLNNVQRAISSRTTIPILTGIKIAVLDSGIILTGSDSTISIEIYISKE 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 S+ GSI + + L DIV+KL + Q++ ++ L T I G+S F L Sbjct: 61 DESNQLSIAETGSIVLPSRFLGDIVKKLPED-QLTLEVQDNLQTV--IRSGESVFNLNGT 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 SE+P+ E + ++ L + K +V T +++ ++IR G+ F + +E LK A Sbjct: 118 AGSEYPTLPEIDADSTYVLPGHLFKRVVNHTIISVSNQQIRPLFTGVHFILADEQLK--A 175 Query: 174 VATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 V+TD HRL+ V + K I +P + + E+ R++ + +++ ++++++ Sbjct: 176 VSTDSHRLSQRIVPLTMPEESQGKALEINIPGQTLTELTRLVDDNE-DIEMMVTDNQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 I+++ + RL++G +P+ ++ + +++V+ L AV+R I+S + VKLS Sbjct: 235 KIDNVYLYSRLLEGNYPDTDRLLSLDYNTKIKVDAQELVHAVERALILSHQGKNNVVKLS 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 LS ++ ++ + ++G E +++ E ++I FN YL E + + +V V+ Sbjct: 295 LSQEEAILSGHSSEIGYVKEKLSLLSFEGDDLEISFNPDYLREALRSFGGQDV----VIR 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ ++S + +D+D + N ++ P+R Sbjct: 351 FVNPTHSFILTPSEDED-------EFNMVQLITPIR 379 >gi|171778196|ref|ZP_02919425.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283020|gb|EDT48444.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 378 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 180/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ +S L+ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 2 IKFSINKSFFLQALNATKRAISSKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A+ +IV L D ++ F+E E ++ ++ G S L+ Sbjct: 62 NENAGLLITSSGAVLLEANFFINIVSSLPD---VTLDFEEIE-HHQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 +P +E + + +LK+++ T FA + +E R L G+ +++ +D K Sbjct: 118 KDVDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ + + ++++P K++ E + + +V+V S+S++ Sbjct: 177 -AVATDSHRMSQRKLTL-DNTSNDFNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ S + E+ N LR A++R ++S + + VK+ + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNSFETEVTFNTGALRSAMERAHLISNATQNGTVKVEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ + V++P++GK E +++ + + I FN YL+E + + S+ VV Sbjct: 295 TNNSISAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKSETVV 347 >gi|87308269|ref|ZP_01090410.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645] gi|87288826|gb|EAQ80719.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645] Length = 372 Score = 108 bits (269), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 189/396 (47%), Gaps = 41/396 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKAS----GPEIEITGA 56 MKIT +R + A + ++ P+ ++ L A + + A+ G IE++G Sbjct: 1 MKITFDREQFQQAFQTAAAVAPSRSPKPILQNIKLDATESGAIMMATDMEVGVRIEVSGV 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-SNFYLQSFPE 115 V+ GSI + I+R++ D ++ +E E GT I G+ S F L + Sbjct: 61 ---EVEAPGSIVLPVQRFGSILREVSD-EKLRITRE-EGGT---IVQGERSKFTLSTENP 112 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP+ EL++ LK L+ RT FA +E RY L GI + + ++ AVA Sbjct: 113 EEFPAVHSFTETKYHELSARTLKELIRRTLFAADSESGRYALGGILLEMEAD--QVTAVA 170 Query: 176 TDGHRLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 TDG RL+ VA A IVP +A+ I + L++ +++V+++ + + + Sbjct: 171 TDGRRLSKMSGPAVAIEGHGSASEVMTIVPARAMQLIEKALTNLEATVQIAARSNDVLVK 230 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + ++ RL++G FP +++V+P D K + + A+ + +I++S + + + Sbjct: 231 VGAATIYARLVEGRFPKWRDVLPEKRDAKAIELTVGPAFAALRQAAIVASDESRGIDFTF 290 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ ++G++ + Y+ P++I +++Y+ + +V+D E F L Sbjct: 291 GGGSAVLSSTTAEVGQSHVEFPIAYDGDPVEITMDHRYVADFY------KVLDGERQFTL 344 Query: 351 ---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 D+ ++++F + +N D YV+MP+ Sbjct: 345 NLQDADSAALF------STDDNYD------YVVMPL 368 >gi|304405888|ref|ZP_07387546.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus YK9] gi|304345131|gb|EFM10967.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus YK9] Length = 380 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 96/400 (24%), Positives = 190/400 (47%), Gaps = 39/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK+++ ++++ + + + + IP+ + + + AS +I I IP Sbjct: 1 MKLSIAKNELNDAIQQVAKAASTRPAIPILGGIKFDVTHQGITLTASDTDISIQSFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTE--VNISHGDSNFY 109 A VD GS+ + + + +IV+KL D +I E+G + I G ++ Sbjct: 61 SGDSIVAKVDKPGSVVLPSKFIVEIVKKLPSDEVEI------EVGEQFITMIRSGSTDIQ 114 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 + EFP E ++ +LK+L+ +T FA +T E L G ++ E +L Sbjct: 115 MVGLDPEEFPVLPSIEQSDVLQIPGDLLKSLIRQTVFAASTSEQTPILTGALVNLFEGEL 174 Query: 170 KLCAVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 + VATD HRLA A VD + + + ++++ K + E+ R++ + V++ +++++ Sbjct: 175 RF--VATDRHRLANRSAHVDTLPSL-RFSNVVISAKTLNELSRLIPDASALVEMVVADNQ 231 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 I S+ RL+DG +P+ +IP S EL V+ L A+DR +MS + V Sbjct: 232 ALFKIGSVLFYSRLLDGTYPDTSKIIPQSYKTELVVDTKKLTDAIDRAYLMSREEKTNIV 291 Query: 287 KL-SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDD 344 +L +L + ++ + ++G+ E + + E + I FN KY+L+++ I S + Sbjct: 292 RLITLEHGGIEISSSSSELGRVTEQLEAFKMEGEALRIAFNSKYMLDVLKVIDS-----E 346 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + S + IR D ++ Y+++P R Sbjct: 347 QLNIQFTGAMSPIIIRPADHP---------HSTYIILPYR 377 >gi|19745203|ref|NP_606339.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS8232] gi|19747292|gb|AAL96838.1| beta subunit of DNA polymerase III [Streptococcus pyogenes MGAS8232] Length = 378 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIKVTPTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|322515791|ref|ZP_08068736.1| DNA-directed DNA polymerase III beta subunit [Streptococcus vestibularis ATCC 49124] gi|322125753|gb|EFX97071.1| DNA-directed DNA polymerase III beta subunit [Streptococcus vestibularis ATCC 49124] Length = 378 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 179/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A+ ++V L D F+E E +V + G S L+ Sbjct: 62 EENAGLLITRPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + VLK+++ T FA +T+E R L G+ F + N +DLK Sbjct: 119 DVEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ + +++P +++ E+ + S ++++ S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEII 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKSETV 346 >gi|72160490|ref|YP_288147.1| DNA polymerase III subunit beta [Thermobifida fusca YX] gi|71914222|gb|AAZ54124.1| DNA polymerase III beta subunit family protein [Thermobifida fusca YX] Length = 379 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 95/397 (23%), Positives = 179/397 (45%), Gaps = 31/397 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLE-IKASGPEIEITGAIPA 59 MK V+R + + R + + +PV + L+ D + ++ SG + E++ A Sbjct: 1 MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQ--A 58 Query: 60 SVDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 SVDV GS+ V LL +IVR L + F E G+ ++ G++ F L + P Sbjct: 59 SVDVHAEEAGSVLVPGRLLAEIVRTLPP-HPVEFHVE---GSRALLTCGNARFTLLTLPL 114 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P+ + V V + + + ++ L G+ H+ + A Sbjct: 115 EDYPTLPAMPRTIG-SAPADVFATAVRQVLPSTSRDDTLPMLTGV--HLTFRGDTILLAA 171 Query: 176 TDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR------I 228 TD +R+AV E+ + + S +VP + +G+ R L+ + + +S S+SR I Sbjct: 172 TDRYRIAVREMWWKPEEVDIDTSALVPARTLGDFSRSLTGGNVDIALSTSDSRGAGEGMI 231 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + RLID +F +Y++ P + V L +AV RV++++ R V+L Sbjct: 232 GFEHDGKRTTTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVAD-RSTPVRL 290 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S +S ++ + + D +A+E++ V + PM I FN +Y L+ + N+ + + Sbjct: 291 SFTSSEVVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVET-----ERAFL 345 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + I G D + Y++MP+R+ Sbjct: 346 RFVAPTRPAVITGTPAKEGGKPDFR----YLVMPLRL 378 >gi|330883328|gb|EGH17477.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 206 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 2/162 (1%) Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 YYLNG+ ++ L+ AVATDGHRLA+ + + A +IVPRK + E+ R+L+ Sbjct: 45 YYLNGMLLEVSAGILR--AVATDGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTE 102 Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 +D V + L + I + + +L+DG+FP+Y+ V+P DK + + LR+A R Sbjct: 103 QDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSR 162 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 +I+S+ + + ++L L+S +L + +NP+ +A E ++V YN Sbjct: 163 TAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYN 204 >gi|111219508|ref|YP_710302.1| DNA polymerase III subunit beta [Frankia alni ACN14a] gi|111147040|emb|CAJ58687.1| DNA polymerase III, beta chain [Frankia alni ACN14a] Length = 413 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 43/409 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER + E + R + + T + V +LL A +L++ A E+ G + Sbjct: 22 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ LL +I R L A + + GT + I+ G++ F L P ++ Sbjct: 82 ATVSEEGRALVNGKLLAEITRALP-AAPVDLGID---GTRLVITCGNARFALPMLPVDDY 137 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ V + + S V + A ++ L G+ I + L L A TD Sbjct: 138 PALPAMPPV-TGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAA--TDR 194 Query: 179 HRLAV-----------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--- 224 +RLAV E D A + +VP + + + + LS V ++L Sbjct: 195 YRLAVRSLKWRPDDSAGEGDAAAPVTVA---LVPARTLLDTAKSLSGSGVEVSIALGTGP 251 Query: 225 --ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 E+ + + RL++G+FP ++ ++P S+ ++ L++AV RV+++++ + Sbjct: 252 SGETLAGFAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVAA-K 310 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV- 341 V+LS S D L + +A E++ V Y+ + + FN YLL+ + + SD V Sbjct: 311 TAPVQLSFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVR 370 Query: 342 -----VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D V ++N + GK D D + Y+LMP+R+ Sbjct: 371 IGFASAEDPAV----AANKPAILTGKADDDGEVPDYR----YLLMPIRL 411 >gi|16885215|gb|AAF98349.2| DNA polymerase III beta subunit [Streptococcus pyogenes] Length = 378 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A + +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADL-MVVLPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|228476802|ref|ZP_04061450.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126] gi|228251539|gb|EEK10676.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126] Length = 378 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I S Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A+ ++V L D F+E E +V + G S L+ Sbjct: 62 EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + VLK+++ T FA +T+E R L G+ F + N +DLK Sbjct: 119 DVEQYPRIQEVDSLTPLLMDTKVLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ A +++P +++ E+ + S +++V S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDDIENLEVFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEII 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGSVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKSETV 346 >gi|330718063|ref|ZP_08312663.1| DNA polymerase III, beta subunit [Leuconostoc fallax KCTC 3537] Length = 377 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 81/339 (23%), Positives = 166/339 (48%), Gaps = 17/339 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++ R + ++ L R I + TIP+ ++ ++ +D L + S +I I I S Sbjct: 1 MHFSINRQNFIKSLNAVSRAISSRTTIPILTNIKIEVSDTQLTLTGSNADISIQTRILDS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +I+++L F+ G I+ G S+F + Sbjct: 61 DTTAELIIKETGGITLPATFFSNIIKRLPADT----FELKLEGLRAAITSGASSFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E E S ++++ L +++ +T + +T+E R L G+ F + + +K + Sbjct: 117 DIQNYPQLPEVEDAESLSVSAAQLTDIISQTIISASTQESRPILTGVHFQLTGDSVK--S 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + A++ + +IVP K+ E+ +L +D V + L+ ++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGADAQVNADVIVPAKSFKELGAMLEGQDRVV-IKLTANQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + + RL++G +P +IP + EL +N L A+DR +++S R V+L++ Sbjct: 234 GNTTFYSRLLEGNYPETDRLIPTESTTELMINAMTLLGAIDRAALLSHESRNNVVQLTMK 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 + ++ + ++G+ E+++ E ++I FN Y+ Sbjct: 294 DNTAVLSGMSQEIGQVKEALDAKKVEGDDLEISFNPDYV 332 >gi|325294209|ref|YP_004280723.1| DNA polymerase III, beta subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064657|gb|ADY72664.1| DNA polymerase III, beta subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 365 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 48/399 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++I + +++ IP+ ++L +A D +L++ A+ EI ++ I Sbjct: 1 MKIRISSNNIKSAVKKVFSAADKRGNIPILSNILFEAEDNILKLTATNLEIGVSTFIDCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 V G TV+A + L +G E + DS ++S S F Sbjct: 61 VTESGKTTVNAQKCAKLFSSL-------------IGEEFEVETDDSKLIVKS-ANSRFSL 106 Query: 120 --------STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E + +L+SS + +++ +A++ +E RY L G++F + K+ Sbjct: 107 ATLPPEEFPEIEFPESFGVKLSSSDIDRAIKKVSYAVSKDEARYILTGVYFRSFGD--KI 164 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATDGHRLA+ E+ A+ + SII PRKA+ E+ ++L D +++ E++I Sbjct: 165 HAVATDGHRLALFEMK--AEAEEFSSII-PRKALSELKKLLKESD-EIELLGKENKIFFR 220 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSL 290 I +IDGE+P+Y VIP N E L A+ VS++ I+AV L+L Sbjct: 221 IGDTLFWSSVIDGEYPDYMAVIPEDNPLECIAIREELVNALKEVSVIYDKEEIRAVILNL 280 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L + ++ A E ++ V Y+ +I FN +LLE + + D + Sbjct: 281 TPGNLRLIARKMELDSASEEAEVNIPVEYSGEEFEIGFNINHLLEAVSSFDG-----DTI 335 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D S V I +++ N V+MPM++ Sbjct: 336 KILMDQPISPVLIVSEEEPELKN---------VIMPMKV 365 >gi|190410684|ref|YP_001965254.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1] gi|84872699|gb|ABC67436.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1] Length = 372 Score = 107 bits (268), Expect = 2e-21, Method: Compositional matrix adjust. Identities = 90/387 (23%), Positives = 165/387 (42%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK+ ++ +D+ + +A R + + PV +LL A D L I+A E+ +PA Sbjct: 1 MKLRIDHADLAAAVCYAARTLPSRPPAPVLAGLLLDATGDERLRIRAFDYEVSADTTVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G V LL DI L+D + GT + + G + F L P E+P Sbjct: 61 AITTPGRALVPGRLLADITTTLRDDVHLDLD-----GTRLTLRAGSARFTLPLLPLEEYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E V + L++ V + A++ EE L GI + E L ATD + Sbjct: 116 TLPEPGDV-TGTLSAPAFAEAVAQVACAVSREEALPVLTGISLRHDHEASTLTLSATDRY 174 Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R AV + A + ++I R + + + L E + + Sbjct: 175 RYAVRTLPWKDAHLPDTGAVIPGRALLDAAKAAAGDATVDLVLPARSGLFALRGEQHTTT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLCM 297 +R +DGE P Y ++ P V L+ AV RV+++S + ++++ + D L + Sbjct: 235 IRALDGELPKYASLFPTEFAHTATVEIDALKAAVQRVALVSPKKDGPIRMTFAGDGTLVL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A+++++ + + I FN +LL+ + +++ + V F SS Sbjct: 295 ESGSGDDAQALDAVDTALDGAELTIAFNPAFLLDGLSALTA-----ESVRFDFTSSTKPA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G D + + Y+LMP+R Sbjct: 350 VLSGHGSDDQALR-------YLLMPIR 369 >gi|322373977|ref|ZP_08048511.1| DNA polymerase III, beta subunit [Streptococcus sp. C150] gi|321276943|gb|EFX54014.1| DNA polymerase III, beta subunit [Streptococcus sp. C150] Length = 378 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 87/351 (24%), Positives = 177/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I S Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSEGIYLTGSNGQISIENSISVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G+I + A+ ++V L D F+E E +V + G S L+ Sbjct: 62 EENAGLLITQSGTILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + VLK+++ T FA +T+E R L G+ F + N DLK Sbjct: 119 DVEQYPRIQEVDSLTPLMMNTKVLKSIISETSFAASTQESRPILTGVHFVLSNHNDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ A +++P +++ E+ + S +++V S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDDIDNLEVFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIV 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVQDVSGSDLIISFNPTYLIDALKALKSETV 346 >gi|86738726|ref|YP_479126.1| DNA polymerase III subunit beta [Frankia sp. CcI3] gi|86565588|gb|ABD09397.1| DNA polymerase III, beta subunit [Frankia sp. CcI3] Length = 402 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 102/416 (24%), Positives = 180/416 (43%), Gaps = 47/416 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER + E + R + + T + V +LL A +L+I A E+ + Sbjct: 1 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPILKIAAYDYEVAAQCTVH 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ LL +I R L A + + GT + I+ G++ F L P ++ Sbjct: 61 ATVSEEGRGLVNGKLLAEITRALP-AAPVDLGID---GTRLVITCGNARFALPMLPVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + S V + A ++ L G+ I + L L A TD Sbjct: 117 PALPAMPPI-TGHIEGSAFAAAVSQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAA--TDR 173 Query: 179 HRLAVAEV-------------DIVAQIAKMPSI-----IVPRKAVGEILRILSSKDSSVK 220 +RLAV + D V + P +VP + + + + LS V Sbjct: 174 YRLAVRTLKWRPSETAAGPDEDGVTGVDGPPPTPVTVALVPARTLLDTAKSLSGSGVEVS 233 Query: 221 VSLS-----ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 ++L E+ + + RL+DG FP Y+ ++P S+ ++ L++AV RV Sbjct: 234 IALGTGPSGETLAGFAGSTRQTTTRLLDGSFPPYRKLLPDSSPLIAQLEIAPLQEAVKRV 293 Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 +++++ + V+L+ S D L + +A E++ V Y+ + + FN YLL+ + Sbjct: 294 ALVAA-KTAPVQLTFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGA 352 Query: 336 ISSDEV------VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + SD V +D V ++N + GK D D + Y+LMP+R+ Sbjct: 353 LESDVVRIGFASAEDPAV----AANKPAILTGKADDDGEVPDYR----YLLMPIRL 400 >gi|313611865|gb|EFR86324.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL F2-208] Length = 256 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 66/212 (31%), Positives = 124/212 (58%), Gaps = 9/212 (4%) Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 +VLKN+V +T FA++ E+R L G+ + I E KL AVATD HRLA+ E+ + I + Sbjct: 15 NVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLSAVATDSHRLALREIPLETDIDE 72 Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 +I++P K++ E+ +IL S++++L+ ++I ++ L RL++G +P+ +IP Sbjct: 73 EYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIP 132 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDNPDMGKAIESMN 312 EL +N QA+DR S+++ R +KL +L + ++ ++ ++P++G E N Sbjct: 133 TDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSE--N 190 Query: 313 VY---YNECPMDICFNYKYLLEIIDNISSDEV 341 V+ + + I FN KY+++ + D++ Sbjct: 191 VFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 222 >gi|284028001|ref|YP_003377932.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836] gi|283807294|gb|ADB29133.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836] Length = 381 Score = 107 bits (268), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/350 (25%), Positives = 161/350 (46%), Gaps = 22/350 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + A R + + ++P+ +L++A +G + + E + +PA Sbjct: 1 MKFRVERDVLAESVAWAARSLPSRPSVPILAGLLVEAEEGQITLSGFDYETSVRVTVPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G +S L+ DI + L + + + G + ++ G S F LQ+ P E+P+ Sbjct: 61 VADTGKCLISGRLVADISKSLPN-QPVDIAVD---GAKAQVTCGSSRFTLQTLPTEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + S V V + A E+ L G+ I + L +ATD +R Sbjct: 117 LPDLP-AASGTVRSDVFAQAVSQVVTAAGREDTLPVLTGVRVEIEGSTISL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E++ Q + ++P + + E + ++ D + VSL+ I V Sbjct: 174 LAIRELEWNPQSPDASAAALIPARVLSETAKAMTGTD--IIVSLAAPGSGDGIVGFEGEV 231 Query: 240 ---------RLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 RL+DGEFP + +IP + +R++ L +AV RV++++ R V+L Sbjct: 232 SGGNRRATTRLLDGEFPKVRGIIPTDSAIATRVRLDTATLVEAVKRVALVAE-RNAPVRL 290 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + S D + + + D +A ES+ P+ + FN YLL+ ++ I + Sbjct: 291 TFSEDSVTLDAGSGDEAQASESIEARVVGEPVTVGFNPTYLLDGLNAIGT 340 >gi|108796983|ref|YP_637180.1| DNA polymerase III subunit beta [Mycobacterium sp. MCS] gi|119866067|ref|YP_936019.1| DNA polymerase III subunit beta [Mycobacterium sp. KMS] gi|108767402|gb|ABG06124.1| DNA polymerase III, beta subunit [Mycobacterium sp. MCS] gi|119692156|gb|ABL89229.1| DNA polymerase III, beta subunit [Mycobacterium sp. KMS] Length = 398 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 177/401 (44%), Gaps = 33/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R D + + R + + T+PV VLL +D L I E+ + A Sbjct: 13 LKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFDYEVSAEVRVVAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + GS+ VS LL DI + L + E GT V+++ G + F L + ++ Sbjct: 73 IASPGSVLVSGRLLSDITKALP-AKPVDVSVE---GTRVSLTCGSARFSLPTMAVEDYPA 128 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ +E V +L + + A ++ L GI I E + L ATD Sbjct: 129 LPTLPDETGVIGADL----FAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVLA--ATD 182 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIH 229 RLAV E+ + +++VP K + E + + + V ++L E + Sbjct: 183 RFRLAVRELTWSTSSPDVEAAVLVPAKTLAEAAKA-GTDGTDVHLALGAGSAVGKEGLLG 241 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + E + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ Sbjct: 242 IRSEGKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVAD-RGAQVRME 300 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + D L ++ D+G+A E + V ++ P+ I FN YL + + ++ S + V F Sbjct: 301 FADDVLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVTFG 355 Query: 350 LDSSNSSVFIR-GKDKDSKNNKDN----KVNAFYVLMPMRI 385 + + +R D+D+ + + Y+LMP+R+ Sbjct: 356 FTTPSRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396 >gi|86606304|ref|YP_475067.1| DNA polymerase III subunit beta [Synechococcus sp. JA-3-3Ab] gi|86554846|gb|ABC99804.1| DNA polymerase III, beta subunit [Synechococcus sp. JA-3-3Ab] Length = 454 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/374 (24%), Positives = 177/374 (47%), Gaps = 38/374 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIPAS 60 T E++++ L R + + +PV +VL++A+ + + ++ I A Sbjct: 51 FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFEAE 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G T+ A LL DIV +L G I + E V ++ + L+ P E+P+ Sbjct: 111 VKGSGRTTLPAKLLSDIVSRLPSGP-IGLSQVPE-SAAVTLTSAAGQYQLRGMPAEEYPT 168 Query: 121 TKE-----------EEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 E EE + + EL L + +T FA + ++ + L G+ + Sbjct: 169 LPEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTG 228 Query: 168 DL-KLCAVATDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSKD--S 217 D +L ATDGHRLA+ +V D+ A K+ +P + + E+ RIL ++ S Sbjct: 229 DPPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKL-DFTIPARTLREVERILGAQTAAS 287 Query: 218 SVKVSLSESRIHLNIESLSMSV--------RLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 +V++ S++ + + S RL++G++P+Y +IP ++ + + L Sbjct: 288 AVELRFDRSQVQFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPLI 347 Query: 270 QAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327 ++++RV + ++ R + +K +LS + L ++ + PD+G ES+ V + +++ FN + Sbjct: 348 ESLERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNVR 407 Query: 328 YLLEIIDNISSDEV 341 YLLE + + +V Sbjct: 408 YLLEALKVFHTQQV 421 >gi|282859399|ref|ZP_06268506.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010] gi|282587833|gb|EFB93031.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010] Length = 374 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 21/370 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYD 76 ++I KN++ + L + + L I AS E + I S + S V+ + D Sbjct: 18 SKVIASKNSLAILDSFLFEIKNNQLTITASDSENTMHSTINLDSAEGETSFAVNNRTIID 77 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASS 135 V++L + +E + +G NF +Q P EFP + + + + Sbjct: 78 AVKELPEQPLSLDVNMDEQKIYITYQNGSYNFPIQ--PADEFPKVQPIAAGATTITIDAD 135 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 +L + R+ FA A +E+R +NG++F ++ + L + VA+DGH+L ++ + + Sbjct: 136 ILAENINRSLFATAQDELRPVMNGLYFDLSADSLAI--VASDGHKLVRNKIFTIK--SDT 191 Query: 196 PS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 PS I+P+K + +L+ V + + ++ +S RLI+G +PNY +VIP Sbjct: 192 PSAFILPKKPANLLKNVLTKDGGDVVIRYDQRSAEISYAEGYLSCRLIEGRYPNYNSVIP 251 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313 +N ++ ++ +L A+ RVS +S Q ++ + + +L + ++ D A ES+ Sbjct: 252 ETNPNQITIDRRSLIGAIRRVSPFASESSQLIRFHIENGQLTLNAEDIDFSTSAKESVIC 311 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 Y M I F +LEI++N+ D++ + D S + V + GK +++ Sbjct: 312 DYAGNAMSIGFKGASMLEILNNLEGDDI----TIQLADPSRAGVIVPGKQPENE------ 361 Query: 374 VNAFYVLMPM 383 + ++MPM Sbjct: 362 -DVLMLIMPM 370 >gi|206973618|ref|ZP_03234536.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|206747774|gb|EDZ59163.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] Length = 376 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 164/354 (46%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++SK V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSKLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q +DR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGIDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ N +GK E+ + E +I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETVT 346 >gi|75761787|ref|ZP_00741722.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490720|gb|EAO54001.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 273 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 75/273 (27%), Positives = 139/273 (50%), Gaps = 18/273 (6%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD--------VCGSITVS 70 + + + TIP+ + + A + + + S +I I IP D GSI + Sbjct: 2 KAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEIAQSGSIVLQ 61 Query: 71 AHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 A +IV+KL +D +IS EN T+ I G S F L +E+P + E + Sbjct: 62 AKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLNGLDSAEYPLLPQIEEHHV 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F++ + +LK+++ +T FA++T E R L G+ + + +L +ATD HRLA+ + I Sbjct: 118 FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL--TCIATDSHRLALRKAKIE 175 Query: 190 AQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 IA ++++P K++ E+ +IL + V + ++E ++ + L RL++G + Sbjct: 176 GHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNY 235 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 P+ +IP + ++ VN QA+DR S+++ Sbjct: 236 PDTTRLIPAESKTDIFVNTKEFLQAIDRASLLA 268 >gi|312878754|ref|ZP_07738554.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260] gi|310782045|gb|EFQ22443.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260] Length = 382 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 91/372 (24%), Positives = 170/372 (45%), Gaps = 18/372 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-GAIPA 59 MK+++E+S + A R + + + V +L++A++ +E+ A+ + +T A Sbjct: 1 MKLSIEKSQFTKSWSLAERSVGTSSALNVLSGILVRASESTVELLATDLKTSVTCRARGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+V G + D+ RK +G Q S E + + G S + ++ EFP Sbjct: 61 RVEVPGEAVFPVKSVGDLFRKAPEG-QFSVSVEE---GKATLLAGRSRYRFSTYGVQEFP 116 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + E+ + A + + L E T A EE +L+ +F E+ L V+TD Sbjct: 117 RLPSAEQGTPFGTTTAQQLFEALSEGTLAASTGEEYPQFLSCAYFQ--PENGFLRVVSTD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESL 235 RLA + V A+ P I++P K + E+ RIL S D + +KV +++ + + + Sbjct: 175 SRRLAYSRF-AVGDAAEGPGILLPMKGIKELERILGSLDGETPLKVRFDDAQAYFSTSEV 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +VR ++ +FP Y+ ++P S ++L +A++R+ ++ + V L LS Sbjct: 234 EFAVRRVEAKFPQYERILPTSRTTWFEAGRSSLVEALERIDVVVRDFNRMVVLQLSPGGS 293 Query: 296 C-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 C + PD G+A+E + P+ I FN ++ L+ + + D V + Sbjct: 294 CTLRGRAPDFGEAVEEVEGSIEGEPLRIAFNVRFFLDGLKALK-----DQGVRLDFNGPE 348 Query: 355 SSVFIRGKDKDS 366 + IR DS Sbjct: 349 GHLAIRRPGSDS 360 >gi|260662539|ref|ZP_05863434.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|260553230|gb|EEX26173.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN] Length = 379 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 173/353 (49%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT------ 54 MK T+ R+ + L + R + K+TIP+ + L ++ + + S +I I Sbjct: 1 MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60 Query: 55 -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 G +V+ G+I + A DIV+KL D Q++ + G + I G + F + Sbjct: 61 DGQYQLTVEEPGAIVLPARFFSDIVKKLPD-QQVTIAVTD--GFQAQIMSGTAEFVINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + SFE+A+ + +++ +T A++ +E R L GI H++ D L A Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + + +++P ++ E+ R++ VK+ +++++ Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 + RL++G +P+ +IP +++ + ++ + A++R S++S R VKL++ Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295 Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 V ++ D+G E++ E ++I FN ++ + + + +++ Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAKII 348 >gi|322392424|ref|ZP_08065884.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris ATCC 700780] gi|321144416|gb|EFX39817.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris ATCC 700780] Length = 378 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 173/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IPV + + N+ + + S +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPVLSTIKIDVNNEGITLIGSNGQISIENFISQK 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 62 DENAGLLINSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QDQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171 ++P +E L + +LK ++ T FA + +E R L G+ F + N ++LK Sbjct: 118 KDSEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLSNHKELK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 177 -TVATDSHRLSQKKLTLEKNSDNF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERSRLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V++P++GK E ++ + + + I FN YL+E + ++S++V Sbjct: 295 KQGVVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEKVT 347 >gi|167755164|ref|ZP_02427291.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402] gi|237733413|ref|ZP_04563894.1| DNA polymerase III subunit beta [Mollicutes bacterium D7] gi|167705214|gb|EDS19793.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402] gi|229383448|gb|EEO33539.1| DNA polymerase III subunit beta [Coprobacillus sp. D7] Length = 369 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 165/339 (48%), Gaps = 15/339 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R +L L A + + ++ +PV + D L + S +I I I Sbjct: 1 MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 D+ G + +++ + DIVRK+ D +I G IS S F L Sbjct: 61 EDLTIYQTGGVVLNSRYILDIVRKIDSDEIKIEILD----GALTRISGATSKFDLNGTDV 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P + L + LK+++ +T FA + +E + L GI F L+ C A Sbjct: 117 LDYPRIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINFKAGNRQLE-CT-A 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RLA V + + +I +P+K++ EI +I+ +D +++ +S+ ++ ++ Sbjct: 175 TDSYRLAKKIVSLDEDVTF--NITIPQKSLDEISKIIE-RDEMIEMYVSDRKVLYVFDNN 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RLIDG FP+ +IP + D EL ++ L A+DRVS++++ + +KL +S +K+ Sbjct: 232 IIQTRLIDGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKV 291 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEII 333 ++ ++G E ++ +Y P+ I F+ KY + I Sbjct: 292 VLSSYMQEIGSVEEILDKSFYKGTPISISFSSKYATDAI 330 >gi|184154478|ref|YP_001842818.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus fermentum IFO 3956] gi|183225822|dbj|BAG26338.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus fermentum IFO 3956] gi|299782687|gb|ADJ40685.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus fermentum CECT 5716] Length = 379 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 173/353 (49%), Gaps = 16/353 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT------ 54 MK T+ R+ + L + R + K+TIP+ + L ++ + + S +I I Sbjct: 1 MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60 Query: 55 -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 G +V+ G+I + A DIV+KL D Q++ + G + I G + F + Sbjct: 61 DGQYQLTVEEPGAIVLPARFFSDIVKKLPD-QQVTIAVTD--GFQAQIMSGTAEFVINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + SFE+A+ + +++ +T A++ +E R L GI H++ D L A Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + + +++P ++ E+ R++ VK+ +++++ Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 + RL++G +P+ +IP +++ + ++ + A++R S++S R VKL++ Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295 Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 V ++ D+G E++ E ++I FN ++ + + + +++ Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAKII 348 >gi|88192167|pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase Of Streptococcus Pyogenes gi|88192168|pdb|2AVT|B Chain B, Crystal Structure Of The Beta Subunit From Dna Polymerase Of Streptococcus Pyogenes Length = 378 Score = 107 bits (267), Expect = 3e-21, Method: Compositional matrix adjust. Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-MVVLPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|189345560|ref|YP_001942089.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245] gi|189339707|gb|ACD89110.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245] Length = 374 Score = 107 bits (267), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 96/369 (26%), Positives = 176/369 (47%), Gaps = 21/369 (5%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 I K P +V L +G+L + A+ EI IT G+I + A L D +R Sbjct: 21 IPAKTIDPRYDNVHLTLENGMLTLYATDGEISITAKCEVETADSGNIGIKARTLQDFLRS 80 Query: 81 LQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137 + D + E+ GT V I+ + + ES+ T E+ Y +L ++ L Sbjct: 81 MYDTPVTFSIERQEISDHGT-VFIATDKGRYKIPCLFESKAEKT-EKTYDIVLDLKTAEL 138 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 ++L+++T FA + + +R + G+ F I E ++ +VATDGHRL I Q+ + Sbjct: 139 QDLIQKTVFACSVDGMRPAMMGVLFEIEEN--QITSVATDGHRLVRCRKPITIQVEEKQK 196 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 I+VP + + I ++ ++ S+ + + ++ + LI +PNY+ VIP + Sbjct: 197 IVVPSRVLSIIQKLAQHENVSMSIDEERRTVCYICNNVVLEAALIVEPYPNYEAVIPVEH 256 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYN 316 DK++ T++ +V RV SS I +K+ +S + L + +N + G+ A E + Y+ Sbjct: 257 DKKIVTQRTDIYDSVKRVGRFSS--IGDIKIEVSGEVLKIMAENTNEGESAQEDLPCSYS 314 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 P+ I FN K++ + ++ + E+ L S ++V K K N++ Sbjct: 315 GDPIIIGFNAKFIEAALAHLD-----ESEITIELKSPTTAVIF--KPGIQKENEE----L 363 Query: 377 FYVLMPMRI 385 ++MP+RI Sbjct: 364 IILVMPVRI 372 >gi|168484306|ref|ZP_02709258.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|172042453|gb|EDT50499.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|332198866|gb|EGJ12948.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47368] Length = 378 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEKVT 347 >gi|295398134|ref|ZP_06808183.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans ATCC 11563] gi|294973653|gb|EFG49431.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans ATCC 11563] Length = 383 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 169/353 (47%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ RS ++ L R I + TIPV V + + L + S I I I A Sbjct: 1 MKFSINRSVFIQNLTDVQRAISSRTTIPVLTGVKISVKEEGLYLTGSDATISIEAFIDAK 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I + + L +IV+KL EN + I+ ++F L Sbjct: 61 DDDNKLKIEATGDIVLPSRFLGEIVKKLPSDMMNLEVVEN---FQTEITSDRASFTLNGI 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 SE+P E + ++ L + K +V +T +++ +EIR GI F I +LK A Sbjct: 118 NGSEYPRLPEIDAKQTYALPTDTFKQVVNQTIISVSNQEIRPIFTGIHFEIGNGELK--A 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSII---VPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ + + +++ +P +++ E++RI+ S + +++ ++++++ Sbjct: 176 VATDSHRLSQRIMPLTMPEVAGDTVLDINIPGRSLQELIRIVDSNE-DIEMMVTDNQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 ++ + RL++G +PN ++P + + V + L AV+R I+S + V+L+ Sbjct: 235 KARNIYLYSRLLEGNYPNTDRLLPNDHSTIIEVAASELVNAVERALILSHEGKNNVVRLN 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 +S + ++ + ++G E +NV E ++I FN YL E + + V Sbjct: 295 ISDQDIILSSQSAEVGNVEEEINVVKAEGEALEISFNPDYLREALKSFGQQNV 347 >gi|270308396|ref|YP_003330454.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS] gi|270154288|gb|ACZ62126.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS] Length = 378 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS TV A LL + V L D +++ N +NI + +FP Sbjct: 61 IEEEGSTTVPAKLLTEFVSSLPNDKIELNL---NAKSKALNIKCARFEARITGVDAKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S ++ + V FA AT+E R L G+ L L A DG Sbjct: 118 PVPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAA--DGF 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236 RLAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ Sbjct: 176 RLAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIE 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290 + +L+ G FP Y +IP S ++ V+ A +I + V+L + Sbjct: 236 LVSQLVQGNFPQYSQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNN 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|21234115|ref|NP_639692.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)] gi|13620601|emb|CAC36640.1| putative DNA-polymerase III, beta chain [Streptomyces coelicolor A3(2)] Length = 372 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 93/391 (23%), Positives = 173/391 (44%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++ + + +A R + + +P+ +LL A+ L I A EI A+ Sbjct: 1 MKLTIDHTAFAAAVSYAVRSLPARPPVPILAGLLLDASSSGLRISAFDYEISADTTAAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G VS LL DIV ++ + G + + G + F L + P E+P+ Sbjct: 61 VTETGRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTLPLDEYPA 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L V + A++ EE L GI H + E L ATD +R Sbjct: 116 LPEPGTITG-TLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTLYATDRYR 174 Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESL 235 AV + + A +P S ++P +A+ + + ++ D++V ++L L + Sbjct: 175 FAVRTLSW--KDANLPDTSAVIPGRALSDAAKA-TADDTTVDLALPTGDAGLFTLRSDLT 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK- 294 + ++R ++GE P Y + P V L+ A RV+++S+ + +KL+ ++D Sbjct: 232 TTAIRALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTADST 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + D +A++S++ + I FN +LL+ ++ + + + V F S Sbjct: 292 LVLEGGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNALMA-----ESVQFDFISPT 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D D + + Y+LMP+R+ Sbjct: 347 KPAVLRAHDGDDQALR-------YLLMPIRL 370 >gi|326383910|ref|ZP_08205594.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL B-59395] gi|326197369|gb|EGD54559.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL B-59395] Length = 400 Score = 107 bits (266), Expect = 4e-21, Method: Compositional matrix adjust. Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 27/355 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + +PV V+L A++ L++ E+ T I A Sbjct: 1 MKFRVVRDEFADAVAWVARSLPSRPPVPVLGCVVLTADEFGLQVAGFDYEVSATQVISAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V G VS LL DI + L + K ++ G+ V IS G + F L + P + Sbjct: 61 VSESGKALVSGRLLADITKALPN-------KPVDVTIDGSRVAISCGSAKFSLPTMPVED 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P E + + + + V + A ++ L G+ I E K+ ATD Sbjct: 114 YPELPEVPQ-NTGSVPADLFSEAVSQVAIAAGKDDTLPMLTGVRVEI--EGDKVVLAATD 170 Query: 178 GHRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RLAV E+ + A + +VP K + E + + DS+ V L+ +H I S Sbjct: 171 RFRLAVRELQWLPADAGASGAALVPAKTLSEAAKS-AGADSTGNVELAFGAVH-AIGSEG 228 Query: 237 M----------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 M + RL+D EFP ++ + P ++ V L +++ RVS+++ R V Sbjct: 229 MLGITNNAKKTTTRLLDAEFPKFRQLFPANHTSIATVESAPLIESIKRVSLVAE-RGAQV 287 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +L SSD + +T + GKA E + V + P+ I FN YLL+ + I ++ V Sbjct: 288 RLDFSSDSVLLTAGGDEAGKAEEELPVQFYGEPIIIAFNPHYLLDGLAAIGTETV 342 >gi|257461145|ref|ZP_05626243.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268] gi|257441519|gb|EEV16664.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268] Length = 359 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 88/368 (23%), Positives = 179/368 (48%), Gaps = 26/368 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+ + + + E++ + +++K+ ++ H+L+ A DG+ IKA+ EI ++ + Sbjct: 1 MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S++ G T + L +++ L D + + + + S + L F +FP Sbjct: 61 SIETEGEATANGGKLLSVIKGLSDDS----VTLETVNGALFVKQKKSKYKLPMFETRDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E SF++ + +L +++ + ++ T +Y LNG + E L L V TD Sbjct: 117 SFPVVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNL--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL+V ++ ++ ++ + I++P+KA+GEI ++ S K +K+ E+ + E+ Sbjct: 175 RLSVYKLITQSKAGELDTKILIPKKAIGEIQKLFSDK---IKIYYDENVLLAVSENFEFF 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY+ VIP ++ + + V ++ M + +K+++ D + Sbjct: 232 TKLINGKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMC----EEMKVTIKKDGMIFE 287 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYK--YLLEIIDNISSDEVVDDEVVFRLD-SSNS 355 N D +A + E +I F K +LL+ + NI S+ +F LD +S+ Sbjct: 288 SINEDNSEAKTEIEATI-EINGEIVFGVKNRFLLDFLSNIESE-------IFELDFNSSD 339 Query: 356 SVFIRGKD 363 + F+ D Sbjct: 340 TAFVLSAD 347 >gi|113953564|ref|YP_729240.1| DNA polymerase III subunit beta [Synechococcus sp. CC9311] gi|113880915|gb|ABI45873.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9311] Length = 385 Score = 107 bits (266), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 86/355 (24%), Positives = 177/355 (49%), Gaps = 17/355 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G + +G ++ I ++ Sbjct: 1 MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASVD G++T+ A LL +IV KL + +S + +V ++ ++ ++ P +F Sbjct: 61 ASVDTSGAVTLPARLLGEIVSKLSSDSPVSLSSDAG-ADQVELTSSSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + + L + T FA + +E + L G+ N++ +L A +TDG Sbjct: 120 PELPLVENGTALRVDPASLLKALRATLFASSGDEAKQLLTGVHLRFNQK--RLEAASTDG 177 Query: 179 HRLAVAEVD--IVAQIAKMPS------IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 HRLA+ V+ + A+I+ S + +P +++ E+ R+++S VSL R + Sbjct: 178 HRLAMLTVEDALQAEISAEESEPDELAVTLPARSLREVERLMASWKGGDPVSLFCERGQV 237 Query: 231 NIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + V R ++G +PNY+ +IP + + ++ A++R+++++ V++ Sbjct: 238 VVLAADQMVTSRTLEGTYPNYRQLIPDGFSRTIDLDRRAFISALERIAVLADQHNNVVRI 297 Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++ + ++ D D+G ES+ N + I FN +Y+L+ + + D V Sbjct: 298 ATEPATGLVQISADAQDVGSGSESLPAEINGDAVQIAFNARYVLDGLKAMDCDRV 352 >gi|306826409|ref|ZP_07459723.1| DNA-directed DNA polymerase III beta subunit [Streptococcus pyogenes ATCC 10782] gi|304431404|gb|EFM34399.1| DNA-directed DNA polymerase III beta subunit [Streptococcus pyogenes ATCC 10782] Length = 378 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 92/354 (25%), Positives = 172/354 (48%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 E +S RL++G +P+ ++ + ++ N +LR A++R ++S + + VKL Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETKVVFNTQSLRHAMERAFLISNATQNGTVKL 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|296137753|ref|YP_003644996.1| DNA polymerase III subunit beta [Tsukamurella paurometabola DSM 20162] gi|296025887|gb|ADG76657.1| DNA polymerase III, beta subunit [Tsukamurella paurometabola DSM 20162] Length = 396 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 101/405 (24%), Positives = 177/405 (43%), Gaps = 40/405 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + E + R + + +PV VLL A D L + SG + E++ + Sbjct: 10 MKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTV--SGFDYEVSAQVRVG 67 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESE 117 +V G + VS LL DI + L + + EL T V IS G + F L + P + Sbjct: 68 AEVADEGQVLVSGRLLADITKALPNKP-----VDVELDVTRVAISCGSAKFSLPTMPVED 122 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E + + E S+ + + A ++ L GI I E ++ AT Sbjct: 123 YPQLPELPQQTGAIE--RSMFAEAISQVAIAAGKDDTLPMLTGIRVEI--EGQRVVLAAT 178 Query: 177 DGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSL-------SESRI 228 D RLAV E D Q + +++VP K + E + + DS V ++L ++ + Sbjct: 179 DRFRLAVREFDWQPQSGDVKAAVLVPAKTLSEAAKTFAG-DSEVGIALGAGSAVGADGLL 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + RL+D +FP ++ ++P S+ + L +A+ RV++++ R V++ Sbjct: 238 GVVGPDRRTTTRLLDADFPKFRQLLPASHTAIATMEIAPLLEAIKRVALVAD-RGAQVRM 296 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L ++ D GKA E + + P+ I FN YL + + I + D V F Sbjct: 297 EFGDGTLRLSAGGDDAGKAEEELPADFQGEPLTIAFNPGYLQDGLAAIHT-----DSVTF 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAF--------YVLMPMRI 385 + + +R +++ D+ AF Y+LMP+R+ Sbjct: 352 GFTTPSRPAVLRPTVENAFQPDDS--GAFPAPQSAYTYLLMPVRL 394 >gi|15899951|ref|NP_344555.1| DNA polymerase III subunit beta [Streptococcus pneumoniae TIGR4] gi|148988887|ref|ZP_01820302.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] gi|148993606|ref|ZP_01823077.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68] gi|148997956|ref|ZP_01825469.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP11-BS70] gi|149003111|ref|ZP_01828020.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|149007715|ref|ZP_01831324.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP18-BS74] gi|149020160|ref|ZP_01835134.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP23-BS72] gi|168487222|ref|ZP_02711730.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168489314|ref|ZP_02713513.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195] gi|168493998|ref|ZP_02718141.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|168576112|ref|ZP_02722017.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016] gi|169834446|ref|YP_001693436.1| DNA polymerase III subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|194397554|ref|YP_002036723.1| DNA polymerase III subunit beta [Streptococcus pneumoniae G54] gi|221230950|ref|YP_002510102.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC 700669] gi|225853613|ref|YP_002735125.1| DNA polymerase III subunit beta [Streptococcus pneumoniae JJA] gi|225855737|ref|YP_002737248.1| DNA polymerase III subunit beta [Streptococcus pneumoniae P1031] gi|225857811|ref|YP_002739321.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 70585] gi|237651055|ref|ZP_04525307.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237821168|ref|ZP_04597013.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|298229493|ref|ZP_06963174.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255937|ref|ZP_06979523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501758|ref|YP_003723698.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|303254903|ref|ZP_07340988.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455] gi|307066638|ref|YP_003875604.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae AP200] gi|307126153|ref|YP_003878184.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 670-6B] gi|18266730|sp|O06672|DPO3B_STRPN RecName: Full=DNA polymerase III subunit beta gi|14971466|gb|AAK74195.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae TIGR4] gi|147755966|gb|EDK63009.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP11-BS70] gi|147758852|gb|EDK65848.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|147760710|gb|EDK67682.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP18-BS74] gi|147925698|gb|EDK76774.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] gi|147927827|gb|EDK78849.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147930838|gb|EDK81819.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP23-BS72] gi|168996948|gb|ACA37560.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae Hungary19A-6] gi|183569923|gb|EDT90451.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183572312|gb|EDT92840.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195] gi|183575839|gb|EDT96367.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|183578124|gb|EDT98652.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016] gi|194357221|gb|ACF55669.1| DNA polymerase III beta subunit [Streptococcus pneumoniae G54] gi|220673410|emb|CAR67868.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC 700669] gi|225720912|gb|ACO16766.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 70585] gi|225723086|gb|ACO18939.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae JJA] gi|225725186|gb|ACO21038.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae P1031] gi|298237353|gb|ADI68484.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|301793327|emb|CBW35686.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV104] gi|302598174|gb|EFL65235.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455] gi|306408175|gb|ADM83602.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae AP200] gi|306483215|gb|ADM90084.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 670-6B] gi|332071324|gb|EGI81819.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17545] gi|332071686|gb|EGI82179.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17570] gi|332198659|gb|EGJ12742.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41317] gi|332199069|gb|EGJ13150.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47901] Length = 378 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|325300579|ref|YP_004260496.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] gi|324320132|gb|ADY38023.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] Length = 373 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 184/388 (47%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIP- 58 MK TV + + L +++ K +P+ LL+ D LE+ AS E G++ Sbjct: 1 MKFTVSSTAMANKLATMAKVMNNKPALPILSTFLLEVKEDAPLEVTASDLECVWHGSLDI 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G + ++A L D VR L + Q F ++ V I + + ++ + F E+ Sbjct: 61 TGQEGAGKVCITASTLLDAVRNLPE--QPITFTIDDKDKSVTIHYLNGHYGMAGFGSDEY 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + E + F++ ++ L N ++++ FA++ + +R + GI + I+ D KL A+DG Sbjct: 119 PMMQNECDI-RFDMDAATLCNSIDQSLFAVSYDALRPVMTGINYTIS--DGKLECAASDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V +A A ++ KA + +L K+ SV+V + I ++ S S Sbjct: 176 HKL-VRNTYPLAGNADDCRFVLSAKAAKIVKLLLHKKEGSVEVEYNGRNIVFKTDTDSFS 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY ++P +++KE ++ L A+ RV + + + + LS S L +T Sbjct: 235 TRLIEGTYPNYNAIVPTNSNKEATIDRQALLSAIRRVGVFAERTSRQLVLSFSGMALLLT 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y + I F+ + L I++N+ + EV FR+ + + Sbjct: 295 GHDFDNATSAEETVFCTYQGDEVRIAFHAENLKMILENMDT-----AEVRFRMSEACRAA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D ++ +LMPM + Sbjct: 350 IIEPVSGDVQSEH------LALLMPMML 371 >gi|148984546|ref|ZP_01817834.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71] gi|225860014|ref|YP_002741523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|147923323|gb|EDK74437.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71] gi|225727256|gb|ACO23107.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|301799151|emb|CBW31663.1| DNA polymerase III, beta chain [Streptococcus pneumoniae OXC141] gi|327388987|gb|EGE87335.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA04375] Length = 378 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIEAVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|145218824|ref|YP_001129533.1| DNA polymerase III, beta subunit [Prosthecochloris vibrioformis DSM 265] gi|145204988|gb|ABP36031.1| DNA polymerase III, beta subunit [Chlorobium phaeovibrioides DSM 265] Length = 374 Score = 106 bits (265), Expect = 5e-21, Method: Compositional matrix adjust. Identities = 97/390 (24%), Positives = 183/390 (46%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + + +G + I K+ ++ L G L A+ E+ IT Sbjct: 1 MKLTSSIKQLQDAVGKVAQAIPAKSIDQRFENIHLSIEPGALTFFATDGEVSITARSEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKE----NELGTEVNISHGDSNFYLQSFPES 116 G+I + A L + +R + D +SF E +E GT VNI+ + + ++ Sbjct: 61 TSDSGNIGIRARALQEFLRSMYD-TSVSFSIERQEVSEHGT-VNIATDKGRYTMPCLFQA 118 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + P E+ Y S E+ + + +++++T FA + + +R + G+ F + E DL L A+AT Sbjct: 119 K-PEKHEKNYDISLEMETGEMLDIIQKTTFACSVDGMRPAMMGVLFEL-EGDL-LTAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRL D + + I+VP + + + ++ ++ S+ + + N S+ Sbjct: 176 DGHRLVRCRKDSSLCMPEKLKIVVPSRVLSILQKLAQTETVSMSIESERKFVRFNCGSIV 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + LI +PNY+ VIP +DK+L +N + + ++ RV SS I VK+ + L Sbjct: 236 LDAALIIEPYPNYEAVIPVEHDKQLIINRSTIYDSIRRVGRFSS--IGDVKVQIEGAVLK 293 Query: 297 MTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +N + G+ A+E + Y + I FN ++L + ++ + EV L S + Sbjct: 294 IMAENTNEGESAVEELACNYTGEDISIGFNSRFLEAALAHLD-----ESEVSIELKSPTT 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V R ++ + ++MP+RI Sbjct: 349 AVIFRPHLEEKSD------RLIILVMPVRI 372 >gi|320547712|ref|ZP_08041997.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus ATCC 9812] gi|320447787|gb|EFW88545.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus ATCC 9812] Length = 378 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 179/353 (50%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ +S L+ L R I KN +P+ + ++ + + + S +I I IP + Sbjct: 2 IKFSINKSFFLQALNATKRAISTKNALPILSTIKIEVQNNNITLTGSNGQISIENTIPTT 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G++ + A+ +IV L D ++ F+E E V IS G S L+ Sbjct: 62 NENAGLLITSPGAVLLEANFFINIVSSLPD---VTLDFEEIESHQIVLIS-GKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 +P +E + + +LK+++ T FA + +E R L G+ +++ +D K Sbjct: 118 KDVDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKDFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ + + +++VP K++ E + + +V+V S+S++ Sbjct: 177 -AVATDSHRMSQRKLTL-ENTSNDFNVVVPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ S + E+ N LR A++R ++S + + VKL + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNSFETEVTFNTNALRSAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ + V++P++GK E +++ + + I FN YL+E + + S+ V+ Sbjct: 295 TNNSVSAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKSETVI 347 >gi|228985790|ref|ZP_04145940.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773962|gb|EEM22378.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 376 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNVKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN ++IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E +I F+ +++L+ + I + V Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETV 345 >gi|21909538|ref|NP_663806.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS315] gi|28894914|ref|NP_801264.1| DNA polymerase III subunit beta [Streptococcus pyogenes SSI-1] gi|21903718|gb|AAM78609.1| beta subunit of DNA polymerase III [Streptococcus pyogenes MGAS315] gi|28810159|dbj|BAC63097.1| putative DNA polymerase III beta subunit [Streptococcus pyogenes SSI-1] Length = 378 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 172/353 (48%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G+I + A +I+ L D I+ KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD-ININV-KEIE-QHQVVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLK 170 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D K Sbjct: 119 DVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDFK 176 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 AVATD HR++ + + A +++P K++ E + + +V+V S S+I Sbjct: 177 --AVATDSHRMSQRLITLDNTSADF-DVVIPGKSLREFSAVFTDDIETVEVFFSPSQILF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289 E +S RL++G +P+ ++ + E+ N +LR A++R ++S + + VKL Sbjct: 234 RSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLE 293 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ + + V++P++GK E ++ V + + I FN YL+E + I S+ V Sbjct: 294 ITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346 >gi|47570668|ref|ZP_00241271.1| DNA polymerase III, beta subunit [Bacillus cereus G9241] gi|47552665|gb|EAL11113.1| DNA polymerase III, beta subunit [Bacillus cereus G9241] Length = 376 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNVKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN ++IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E +I F+ +++L+ + I + V Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETV 345 >gi|57234032|ref|YP_181940.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195] gi|57224480|gb|AAW39537.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195] Length = 378 Score = 106 bits (265), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS TV A LL + V L D +++ N +NI + +FP Sbjct: 61 IEEEGSTTVPAKLLTEFVSSLPNDKIELNL---NAKSKALNIKCARFEARITGVDAKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S ++ + V FA AT+E R L G+ L L A DG Sbjct: 118 PVPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAA--DGF 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236 RLAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ Sbjct: 176 RLAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIE 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290 + +L+ G FP Y +IP S ++ V+ A +I + V+L + Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNN 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKA-----QQVSLEV 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|167957209|ref|ZP_02544283.1| DNA polymerase III, beta subunit [candidate division TM7 single-cell isolate TM7c] Length = 365 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 91/390 (23%), Positives = 188/390 (48%), Gaps = 32/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ + + + L I +N +P+ ++LL+ + G L + + EI T I A Sbjct: 1 MKVSITQEKLAKALNLIKDIASSRNELPILNNILLRTDGGRLLVAGTNLEIASTQYIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D GSIT+ A L+ + V L G + +NE ++I+ G + + E+P Sbjct: 61 IDKHGSITIPARLVSEFVSNLPSGT-VELEAKNE---HLHITSGKFSSVINGVVADEYPE 116 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T +E+ +E+ LK + +T A++++ R L G+++H +E L L ATDG Sbjct: 117 LPTIDEKTAIQYEIDVEDLKKAIIQTKIAVSSDVTRAVLTGVYWHNHEGSLYLA--ATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA +A+ S I+P + E+ + + ++ + V ES++ + + Sbjct: 175 YRLAEKR---LAKSNDEVSAIIPASTLSEVSKSV-GEEKKITVLFDESQVCFRTGDMEIV 230 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG+FP+Y+ +IP S++ E+ + + + ++ + + ++ S + ++ Sbjct: 231 SRLIDGKFPDYRQLIPSSSETEIVIKKADFSRVTKIAALFARESGGGITVTASKENSLLS 290 Query: 299 VDN--PDMGKAIESMNVYYNECPMD--ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + ++G E+ + E D + N +YL E+++ I + DE+ F + Sbjct: 291 IHSIASELG---ENTSEASAEISADGQVTLNSRYLTEVLNIIDA-----DEITFSFNGKL 342 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S IR + K+ + +++MP++ Sbjct: 343 SPCVIREQVKNP--------DYTHIIMPLK 364 >gi|55821995|ref|YP_140436.1| DNA polymerase III subunit beta [Streptococcus thermophilus CNRZ1066] gi|55737980|gb|AAV61621.1| beta subunit of DNA polymerase III [Streptococcus thermophilus CNRZ1066] Length = 378 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A+ ++V L D F+E E +V + S L+ Sbjct: 62 EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSAKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + +LK+++ T FA +T+E R L G+ F + N +DLK Sbjct: 119 DAEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ A +++P +++ E+ + S ++++ S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ + LR A++R ++S+ + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEII 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKSESV 346 >gi|269216527|ref|ZP_06160381.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122] gi|269130056|gb|EEZ61138.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122] Length = 364 Score = 106 bits (264), Expect = 6e-21, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 175/388 (45%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +++ L LG A + I ++TIP+ V ++ LE+K + E I + A Sbjct: 1 MKFSINKTEFLNALGIAGKGIASRSTIPILSGVYIKTLGTSLELKGTDSERAIRCTVSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G V LLYDIV+ D A E T+ IS ++F L+ F ++FP+ Sbjct: 61 IDEDGECVVPERLLYDIVKSFPDAAITMEVDE----TQALISCDKTSFTLKVFDPADFPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ V+R + ++ R L G+ + ++L VATD +R Sbjct: 117 FPDIDVNTKASISFKAFSQAVKRVAKVASKDQGRPALTGVLITTIPDGMRL--VATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ +++ + + + L K+ S+++ LS + + S+ R Sbjct: 175 LAMDDIPCENPTEGFEALV--SGSFMQEVASLPEKEESIEICLSSNHVVFTYGSIVFINR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK---LCM 297 I+ FPNYQ ++ S + AV RV +MSS+ +K + S L Sbjct: 233 RIEARFPNYQQLLTDSYTTRTEFETAGILAAVRRVGLMSSLS-APIKFDIESSTATALLS 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 TV DMG A ES++ ++I N++Y ++D +SS + D+V +S Sbjct: 292 TVSQ-DMGSAEESLSCDVEGENIEIALNHQY---VVDGLSS--IPTDKVFLETRTSMMPG 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R +D + Y+LMP+RI Sbjct: 346 IFRAQDPE---------RFLYLLMPVRI 364 >gi|116626974|ref|YP_819593.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMD-9] gi|116100251|gb|ABJ65397.1| DNA polymerase III, beta subunit [Streptococcus thermophilus LMD-9] gi|312277420|gb|ADQ62077.1| DNA polymerase III, beta subunit [Streptococcus thermophilus ND03] Length = 378 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A+ ++V L D F+E E +V + S L+ Sbjct: 62 EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSAKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + +LK+++ T FA +T+E R L G+ F + N +DLK Sbjct: 119 DAEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ A +++P +++ E+ + S ++++ S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ + LR A++R ++S+ + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEII 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKSESV 346 >gi|329576317|gb|EGG57832.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1467] Length = 304 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 78/289 (26%), Positives = 145/289 (50%), Gaps = 13/289 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+TV+RS L+ L R I K TIP+ V + ++ L + S +I I + Sbjct: 1 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ GSI + + +I+RKL + F E +V I+ G ++F + Sbjct: 61 DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDM---FTMEVLDNNQVAITSGKADFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + +L +L ++ T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ V Q + +I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLS-QRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 ++ RL++ +P+ +IP S++ ++ L A++R S++S R Sbjct: 235 TMYFYSRLLEVHYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHER 283 >gi|255535062|ref|YP_003095433.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium 3519-10] gi|255341258|gb|ACU07371.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium 3519-10] Length = 385 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 87/346 (25%), Positives = 159/346 (45%), Gaps = 8/346 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V ++ + L +I + P+ + L + ++ L+I AS E + ++ Sbjct: 10 MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLEVR 69 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESEF 118 D G V A + D V+ + K+ E G+ + I NF + ++ Sbjct: 70 SDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAEDY 129 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + S ++++ +L + T FA + + +R + G+ F E++ V+TD Sbjct: 130 PELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNF--VSTDS 187 Query: 179 HRLAV-AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRL V D++ A+ I+P+K + IL++ V + +E+ + Sbjct: 188 HRLVVYKRTDLMN--AEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIW 245 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLIDG++PNY VIP N L +N L ++ R SIMS+ V+ LS + L + Sbjct: 246 ICRLIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHL 305 Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + KA + YN ++I F+ K+L E++ +SSD++ Sbjct: 306 HAEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSSDDIT 351 >gi|254818680|ref|ZP_05223681.1| DNA polymerase III subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 399 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 177/401 (44%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL D L I E+ + A Sbjct: 13 LKFRLVRESFADAVSWVAKNLPSRPAVPVLSGVLLSGTDDGLTISGFDYEVSAEAQVAAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DIVR L + I F+ + G V ++ G++ F L + ++P+ Sbjct: 73 IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGNARFSLPTMAVEDYPT 128 Query: 121 TK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 +E + L + + + + A ++ L GI I+ + + L ATD Sbjct: 129 LPALPDE---TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230 RLAV E+ A + +++VP K + E R + + V++SL + + + Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAARA-GADGAEVRLSLGAGAGVGKDGLLGI 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S L ++ D+G+A E + + + P+ I FN YL + + ++ S + V F Sbjct: 302 SEGSLRLSAGADDVGRAEEDLAIDFAGEPLTIAFNPTYLTDGLGSVHS-----ERVSFGF 356 Query: 351 DSSNSSVFIRGK-DKDSKNNKDNKVNAF-----YVLMPMRI 385 + +R D DS +A Y+LMP+R+ Sbjct: 357 TTPGKPALLRPALDDDSHPTGPGPFSALPTDYVYLLMPVRL 397 >gi|296110745|ref|YP_003621126.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii IMSNU 11154] gi|295832276|gb|ADG40157.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii IMSNU 11154] Length = 377 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 83/339 (24%), Positives = 163/339 (48%), Gaps = 17/339 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R +++L R I + TIP+ +V + ND L + S +I I I S Sbjct: 1 MQFSINRQAFIKILNDVSRAISSRTTIPILTNVKIVLNDEELVLTGSNSDISIESRIDQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV+ L ++ + G +I+ G S+F + Sbjct: 61 DTSAQLVIKETGGITLPATFFSNIVKNLP-ADHMTLAVD---GVRAHITSGASDFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E V + ++++ L +++ +T + +T+E R L GI +N D+K A Sbjct: 117 DVRNYPQLPEMTDVQTLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + + + +I+P K+ E+ +L +D V + L+ ++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGTETTVNADVIIPAKSFNELQSLLEGQD-RVDIKLAANQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + RL++G +P +IP + +L + + L A++R S++S R V+L+L+ Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTQLTIEASTLLGAINRASLLSHESRNNVVQLTLA 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 + +T + ++G+ E + E ++I FN Y+ Sbjct: 294 DGVVTLTGTSQEVGRVQEELATTSVEGENLEISFNPDYV 332 >gi|168491772|ref|ZP_02715915.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183573995|gb|EDT94523.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC0288-04] Length = 378 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQYK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEKVT 347 >gi|119383096|ref|YP_914152.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222] gi|119372863|gb|ABL68456.1| DNA polymerase III beta subunit family protein [Paracoccus denitrificans PD1222] Length = 372 Score = 106 bits (264), Expect = 7e-21, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 12/256 (4%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 IT +D+ + A ++ER+NTIPV + ++ + L I+++ + + PA+ Sbjct: 15 ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PESEFPST 121 + A LL ++ + +S + G V + G + +Q P S++P+ Sbjct: 75 EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + L ++ R +A++TEE RYYLNGI+ H E +L ATDGHRL Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMHGREG--RLAVTATDGHRL 189 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238 A+ DI K+P +I PR +V + +++ + + S R+ ++ + S++ Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246 Query: 239 VRLIDGEFPNYQNVIP 254 V+ IDG +P+Y VIP Sbjct: 247 VKCIDGAYPDYTRVIP 262 >gi|119383721|ref|YP_914777.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222] gi|119373488|gb|ABL69081.1| DNA polymerase III beta subunit family protein [Paracoccus denitrificans PD1222] Length = 372 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 12/256 (4%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 IT +D+ + A ++ER+NTIPV + ++ + L I+++ + + PA+ Sbjct: 15 ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PESEFPST 121 + A LL ++ + +S + G V + G + +Q P S++P+ Sbjct: 75 EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + L ++ R +A++TEE RYYLNGI+ H E +L ATDGHRL Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMHGREG--RLAVTATDGHRL 189 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238 A+ DI K+P +I PR +V + +++ + + S R+ ++ + S++ Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246 Query: 239 VRLIDGEFPNYQNVIP 254 V+ IDG +P+Y VIP Sbjct: 247 VKCIDGAYPDYTRVIP 262 >gi|78101467|pdb|2AWA|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution gi|78101468|pdb|2AWA|B Chain B, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution gi|78101469|pdb|2AWA|C Chain C, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution gi|78101470|pdb|2AWA|D Chain D, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution Length = 390 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 87/350 (24%), Positives = 170/350 (48%), Gaps = 18/350 (5%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPAS-- 60 ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 17 SINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQKNE 75 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 76 DAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLKGKD 131 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 132 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 190 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 191 ATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 249 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+ +R ++SS VKL + Sbjct: 250 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSXERARLLSSATQNGTVKLEIKDG 309 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 310 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 359 >gi|293550168|ref|ZP_06672840.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|290919215|gb|EFD96291.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M1015] Length = 290 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 65/243 (26%), Positives = 135/243 (55%), Gaps = 5/243 (2%) Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160 I+ G S F L ++P + + +L+ VLKN++ +T+FA++T E R L G+ Sbjct: 20 ITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGV 79 Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 + I E +L +C ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + Sbjct: 80 NWLIQENEL-ICT-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDID 136 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS- 279 + + +++ + +++ RL++G +P+ + P + + +L ++ A+DR S+++ Sbjct: 137 IFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAR 196 Query: 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISS 338 +KLS D + ++ +P++G E ++ E + I FN KY+++ + I + Sbjct: 197 EGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDN 256 Query: 339 DEV 341 DEV Sbjct: 257 DEV 259 >gi|149013382|ref|ZP_01834091.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP19-BS75] gi|182682972|ref|YP_001834719.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14] gi|303259728|ref|ZP_07345704.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293] gi|303262195|ref|ZP_07348140.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS292] gi|303265391|ref|ZP_07351298.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397] gi|303266061|ref|ZP_07351955.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457] gi|303268469|ref|ZP_07354263.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458] gi|147762905|gb|EDK69853.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP19-BS75] gi|182628306|gb|ACB89254.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14] gi|301800975|emb|CBW33636.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV200] gi|302636835|gb|EFL67325.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS292] gi|302639280|gb|EFL69739.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293] gi|302641970|gb|EFL72323.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458] gi|302644365|gb|EFL74618.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457] gi|302645068|gb|EFL75308.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397] Length = 378 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|154249882|ref|YP_001410707.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1] gi|154153818|gb|ABS61050.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1] Length = 367 Score = 106 bits (264), Expect = 8e-21, Method: Compositional matrix adjust. Identities = 83/344 (24%), Positives = 173/344 (50%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 +K TV +S+I + + A I + P+ +L + +G + I A+ + + + Sbjct: 2 LKFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVG 61 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-F 118 + + V A L+ DIVR L + I + +L + G + + + + + E F Sbjct: 62 EYEGNDAFAVDAELVDDIVRNLPEDEFIFEYSNGKLL----VRSGKAKYNITTVSDIERF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P +E F + +S+L+ ++++ F ++E LNG+++ I+ L+L VA+DG Sbjct: 118 PIVDTDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRL--VASDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237 +RL +AE + + I+ K++ E+ ++LSS V ++ S + N ++ Sbjct: 176 YRLGLAEQKL--NLENEFDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTT 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 VR ++ FP+Y+ V+P + + +N + +A+ RV ++S + V+L ++ D + + Sbjct: 234 IVRTVEETFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMEL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 T + D G+A+ES+ + + + + FN K+L E + +I E+ Sbjct: 294 TSQSSDFGEAVESIPITKDGEDLIVNFNPKFLNEPLKHIDEKEI 337 >gi|332077809|gb|EGI88268.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41301] Length = 378 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQYK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|322390525|ref|ZP_08064043.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 903] gi|321142799|gb|EFX38259.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 903] Length = 380 Score = 105 bits (263), Expect = 9e-21, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 4 INFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIK 63 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V GSI + A ++V L D ++ FKE E +V ++ G S L+ Sbjct: 64 DENAGLLVTSPGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQVLLTSGKSEITLKG 119 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P +E L + +LK L+ T FA + +E R L G+ F +++ + +L Sbjct: 120 KDADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSD-NKELK 178 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HR++ +V + + +++P +++ E + S +V+V + ++I Sbjct: 179 TVATDSHRMS-QKVITLEKNGDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRS 237 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 E +S RL++G +P+ +IP + E N NLR A++R ++S + + VKL Sbjct: 238 EHISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFK 297 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + V +P++G+ E ++ + + I FN YL+E + I S++VV Sbjct: 298 NGVVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDSEQVV 349 >gi|312866786|ref|ZP_07726999.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis F0405] gi|311097569|gb|EFQ55800.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis F0405] Length = 378 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 2 INFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIK 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V GSI + A ++V L D ++ FKE E +V ++ G S L+ Sbjct: 62 DENAGLLVTSPGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQVLLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P +E L + +LK L+ T FA + +E R L G+ F +++ + +L Sbjct: 118 KDADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSD-NKELK 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HR++ +V + + +++P +++ E + S +V+V + ++I Sbjct: 177 TVATDSHRMS-QKVITLDKNGDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 E +S RL++G +P+ +IP + E N NLR A++R ++S + + VKL Sbjct: 236 EHISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFK 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + V +P++G+ E ++ + + I FN YL+E + I S++VV Sbjct: 296 NGVVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDSEQVV 347 >gi|289677550|ref|ZP_06498440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 174 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 12/182 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA G ITV A L DI + L + A I K +E +++ + G S F L + P + Sbjct: 61 EPAE---PGEITVPARKLMDICKSLSNDALIDI-KLDE--SKLIVKAGRSRFTLSTLPAN 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP+ +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVAT Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172 Query: 177 DG 178 DG Sbjct: 173 DG 174 >gi|296875520|ref|ZP_06899592.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 15912] gi|296433444|gb|EFH19219.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 15912] Length = 378 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 169/353 (47%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 2 INFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIK 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V GSI + A ++V L D ++ FKE E +V ++ G S L+ Sbjct: 62 DENAGLLVTSPGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQVLLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171 ++P +E L + +LK L+ T FA + +E R L G+ F +++ +DLK Sbjct: 118 KDADQYPRIQEIVASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNKDLK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HR++ +V + + +++P +++ E + S +V+V + ++I Sbjct: 177 -TVATDSHRMS-QKVITLEKNGDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E +S RL++G +P+ +IP + E N NLR A++R ++S + + VKL Sbjct: 235 SEHISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEF 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + V +P++G+ E ++ + + I FN YL+E + I S++VV Sbjct: 295 KNGVVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDSEQVV 347 >gi|217960140|ref|YP_002338700.1| DNA polymerase III subunit beta [Bacillus cereus AH187] gi|222096204|ref|YP_002530261.1| DNA polymerase iii subunit beta [Bacillus cereus Q1] gi|229139332|ref|ZP_04267903.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] gi|217067373|gb|ACJ81623.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|221240262|gb|ACM12972.1| dna polymerase iii, beta subunit [Bacillus cereus Q1] gi|228643879|gb|EEL00140.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] Length = 376 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ + I +NE + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E +I F+ +++L+ + I + V Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETV 345 >gi|270291827|ref|ZP_06198042.1| DNA polymerase III, beta subunit [Streptococcus sp. M143] gi|270279355|gb|EFA25197.1| DNA polymerase III, beta subunit [Streptococcus sp. M143] Length = 378 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 169/352 (48%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ + + N+ + + S +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVNNEGITLIGSNGQISIENFISQK 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 62 NEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 118 KDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELK 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 177 TVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 236 ENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIK 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 296 GGVVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNSEKVT 347 >gi|15902046|ref|NP_357596.1| DNA polymerase III subunit beta [Streptococcus pneumoniae R6] gi|116516939|ref|YP_815419.1| DNA polymerase III subunit beta [Streptococcus pneumoniae D39] gi|30315898|sp|P59651|DPO3B_STRR6 RecName: Full=DNA polymerase III subunit beta gi|2109446|gb|AAC45337.1| beta subunit of DNA polymerase III [Streptococcus pneumoniae] gi|15457530|gb|AAK98806.1| DNA biosynthesis; sliding clamp subunit, required for high processivity; DNA polymerase III beta-subunit [Streptococcus pneumoniae R6] gi|116077515|gb|ABJ55235.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae D39] Length = 378 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + N NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|283768636|ref|ZP_06341548.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219] gi|283105028|gb|EFC06400.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219] Length = 373 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 75/279 (26%), Positives = 144/279 (51%), Gaps = 8/279 (2%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G + + A L +IVRKL D I F E+ GT + F + ++P+ Sbjct: 71 GHLLIEAKYLLEIVRKL-DSDHI--FVESIDGTYTQFKGHQALFKINGMAVHQYPAIDFN 127 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + EL + +L+E+T FA + +E++ L G+ F + +L ATD +RLA Sbjct: 128 KPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNN--QLVCTATDSYRLARK 185 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEI-LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 VD+ +Q +I +P K++ ++ IL + SV S+ S+I + I+++ R++D Sbjct: 186 VVDLDSQ--DQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRIDNMIFQSRILD 243 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G++P +IP EL +N +L +A+DR S + S ++ +L L +D+ +T + + Sbjct: 244 GDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLINDQAILTSRSQE 303 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +G++ E + + +DI F+ Y++E + + ++V+ Sbjct: 304 IGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVL 342 >gi|313889501|ref|ZP_07823147.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313122113|gb|EFR45206.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 377 Score = 105 bits (263), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 171/352 (48%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ RS ++ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 2 IQFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIENIIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D ++ FKE E +V ++ G S L+ Sbjct: 62 NENAGLLISSTGAILLEASFFINIISSLPD---LTLDFKEIE-HHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-L 171 ++P +E L + +LK+++ T FA +T+E R L G+ H+ +D K Sbjct: 118 KDVEQYPRLQEVSTDNPLILETKLLKSIISETAFAASTQESRPILTGV--HLTLKDHKAF 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ + + + A +++P +++ E + + +V++ S S+I Sbjct: 176 KAVATDSHRMS-QRLLTLEKSATDFDVVIPSRSLREFTSVFTDDIETVEIFFSPSQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + +S RL++G +P+ ++ + E N LR A++R ++S + + VKL + Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E + V + I FN YL+E + + ++ V Sbjct: 295 TETSVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKALKNETV 346 >gi|110003909|emb|CAK98249.1| putative dna polymerase III, beta chain protein [Spiroplasma citri] Length = 372 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 170/352 (48%), Gaps = 22/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + ++R IL+ L RII +K IP +L++ + S + I I + Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--GTEVNISHGDSNFYLQSFPE 115 + GS+ + + +++RK++D F E+ G + I + + L + Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDE-----FITLEVVEGNLIKIKANNFDSVLNTLNS 115 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +++P T+ +E +++ S+VLK ++ +T FA+ +E R NG+ ++ + +L Sbjct: 116 ADYPHLSFETEGKEIIFT----STVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKEL 171 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 ATD RL+ ++D +I+P K + EI R++S D +K+ +++ + + Sbjct: 172 IITATDSFRLSCKKIDYSNNYN--FDVIIPGKFINEIGRLISENDQEIKMKITDKSVSVI 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 I + + ++I+G++P+ VI S + L +N L + ++R S++S+ + V L + Sbjct: 230 INNTIVQTKIIEGKYPDTSKVIATSFNTSLTINNRELIKIIERASVLSNETMTTIVTLKI 289 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 K+ +T ++G E + + E I FN KY+L+ + + E+ Sbjct: 290 KEQKVLVTSFTQEIGNTEEEIREFKVEGTDQIIAFNSKYILDALKAFKTKEI 341 >gi|332522185|ref|ZP_08398437.1| DNA polymerase III, beta subunit [Streptococcus porcinus str. Jelinkova 176] gi|332313449|gb|EGJ26434.1| DNA polymerase III, beta subunit [Streptococcus porcinus str. Jelinkova 176] Length = 377 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 168/351 (47%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ RS ++ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 2 IQFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIETIIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G+I + A +I+ L D FKE E +V ++ G S L+ Sbjct: 62 NENAGLLISSTGAILLEASFFINIISSLPDFTLD--FKEIE-HHQVVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E L + +LK+++ T FA +T+E R L G+ + N ++ K Sbjct: 119 DVEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASTQESRPILTGVHLTLKNHKEFK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ + + + A +++P K++ E + + +V++ S S+I Sbjct: 177 AVATDSHRMS-QRLLTLEKSATDFDVVIPSKSLREFTSVFTDDIETVEIFFSPSQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + +S RL++G +P+ ++ + E N LR A++R ++S + + VKL ++ Sbjct: 236 DYISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEVT 295 Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++GK E + V + I FN YL+E + ++ V Sbjct: 296 ESSVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKAFKNETV 346 >gi|73748915|ref|YP_308154.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1] gi|73660631|emb|CAI83238.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 174/393 (44%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS T+ A LL + V L D +S N +NI + +FP Sbjct: 61 IEEEGSTTIPAKLLTEFVSSLPNDKIDLSL---NAKSKALNIKCARFEARITGVDSKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S +++ + V FA A +E R L G+ L L A DG Sbjct: 118 PIPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTLAAA--DGF 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236 RLAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ Sbjct: 176 RLAVYKLPLLESVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIE 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290 + +L+ G FP Y +IP S + V+ A +I + V+L + Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDT 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|290579528|ref|YP_003483920.1| putative DNA polymerase III subunit beta [Streptococcus mutans NN2025] gi|254996427|dbj|BAH87028.1| putative DNA polymerase III beta subunit [Streptococcus mutans NN2025] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 175/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ + L+ L R I KN IP+ + ++ N + + S +I I I A Sbjct: 2 IKFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAE 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V G+I + A+ +IV L D I+ F+E E +V ++ G S L+ Sbjct: 62 EENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIE-QHQVVLNSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171 ++P +E L +++LK ++ T FA +T+E R L G+ + N ++ K Sbjct: 118 KDVEQYPRLQEVGTNNPLILETNLLKTIISETAFAASTQESRPILTGVHLVLTNHKEFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ + +++P +++ E + + SV+V S S+I Sbjct: 177 -AVATDSHRMSQRKLTLDHSSDDF-DVVIPSRSLREFATVFTDDIESVEVFFSNSQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E +S RL++G +P+ ++ + + E+ N LR A++R ++S + + VKL + Sbjct: 235 SEYISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++++ V++P++GK E +++ + + I FN YL+E + + S+ V Sbjct: 295 INNQVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKSETVT 347 >gi|289432911|ref|YP_003462784.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT] gi|288946631|gb|ADC74328.1| DNA polymerase III, beta subunit [Dehalococcoides sp. GT] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 174/393 (44%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS T+ A LL + V L D +S N +NI + +FP Sbjct: 61 IEEEGSTTIPAKLLTEFVSSLPNDKIDLSL---NAKSKALNIKCARFEARITGVDSKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S +++ + V FA A +E R L G+ L L A DG Sbjct: 118 PIPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTLAAA--DGF 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236 RLAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ Sbjct: 176 RLAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIE 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290 + +L+ G FP Y +IP S + V+ A +I + V+L + Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDT 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|319940208|ref|ZP_08014561.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV] gi|319810679|gb|EFW07009.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 INFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISI 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 V GSI + A ++V L D I+ FKE + ++ ++ G S L+ Sbjct: 61 KNEDAGLLVTSSGSILLEATFFINVVSSLPD---ITLDFKEID-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L +SVLKN++ T FA +T+E R L G+ F + E L Sbjct: 117 GKDADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENK-NL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HR++ ++ I+ + +++P +++ E + + +V++ + +++ Sbjct: 176 KTVATDSHRMSQKQI-ILEKNGDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E++S RL++G +P+ +IP + + NLR A++R ++S + + VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + V++P++G+ E ++ + + I FN YL++ + I+S++V Sbjct: 295 INGVVSAHVNSPEVGRVNEEIDTESISGQDLTISFNPTYLIDSLKAINSEKVT 347 >gi|307711217|ref|ZP_07647639.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321] gi|307617179|gb|EFN96357.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 173/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V++P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVNSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|323350830|ref|ZP_08086489.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis VMC66] gi|322123004|gb|EFX94707.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis VMC66] gi|324989579|gb|EGC21525.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK353] gi|325686478|gb|EGD28507.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK72] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 167/350 (47%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + L + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGLTLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNQF-LKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|55820105|ref|YP_138547.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMG 18311] gi|55736090|gb|AAV59732.1| beta subunit of DNA polymerase III [Streptococcus thermophilus LMG 18311] Length = 378 Score = 105 bits (262), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 2 IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A+ ++V L D F+E E +V + + L+ Sbjct: 62 EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSAKTEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172 ++P +E + + + + +LK+++ T FA +T+E R L G+ F + N +DLK Sbjct: 119 DAEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ ++ ++ A +++P +++ E+ + S ++++ S ++I Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E++S RL++G +P+ ++ S + E+ + LR A++R ++S+ + VKL + Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEII 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++V + + I FN YL++ + + S+ V Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKSESV 346 >gi|319746184|gb|EFV98454.1| DNA-directed DNA polymerase III beta subunit [Streptococcus agalactiae ATCC 13813] Length = 378 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 170/352 (48%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L L R I KN IP+ V ++ + + S +I I IPAS Sbjct: 2 IHFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDTIILTGSNGQISIENTIPAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V GSI + A +I+ L D ++ F E E ++ ++ G S L+ Sbjct: 62 NENAGLLVTNPGSILLEAGFFINIISSLPD---VTLEFTEIE-QHQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P +E L + +LK+++ T FA + +E R L G+ I++ Sbjct: 118 KDVDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNKY-FK 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ + + A ++VP K++ E + + +V+V S+S++ Sbjct: 177 AVATDSHRMSQRTFQL-EKSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 E++S RL++G +P+ ++ + E+ N LR A++R ++S + + V+L + Sbjct: 236 ENISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQ 295 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + V++P++GK E ++ V ++I FN YL+E + + S+ V Sbjct: 296 NETVSAYVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKSETVT 347 >gi|308175816|ref|YP_003915222.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117] gi|307743279|emb|CBT74251.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117] Length = 375 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 95/388 (24%), Positives = 189/388 (48%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +VE+ + + + R + ++ PV +L+ +++GL+ ++ EI IPA Sbjct: 1 MKFSVEKDVLADAVSWTARSLAQRPPSPVLAGILITSHEGLVRLEGFDYEISSHIEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI VS LL +I R L + S GT+++++ G S F+L + P E+P+ Sbjct: 61 ISEQGSILVSGKLLAEITRSLPN----STVTIETDGTKISLNCGRSRFHLATMPVDEYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + V + A + ++ L GI I E DL + +ATD +R Sbjct: 117 LPELPAIAG-TIDGQAFSEAVSQVIVAASKDDTLPVLTGIKVEI-ENDL-ITFLATDRYR 173 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E++ +++ S ++ K + E+ + LS+ +K++L E+ + ES + Sbjct: 174 LALRELNWSPNKSEISTSFLIKAKTLSEVAKTLSNS-GELKLALGENGEMVGFESSNRRT 232 Query: 240 R--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 LI+GE+P +++ P V + L +AV RVS+++ R V+++ + +L + Sbjct: 233 TSLLINGEYPKIRSLFPSDTPIHATVRTSELMEAVRRVSVVAE-RNTPVRMAFTDGQLTL 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E++ + + FN +L E +++ ++ D V F S+ Sbjct: 292 DAGTGEDAQAEEAIVAALRGEDIVVAFNPTFLSEGLNSFNT-----DFVRFSFTSAPKPA 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ K ++++D Y++MP+R+ Sbjct: 347 MLTGQKKLDEDDQDQYR---YLVMPVRL 371 >gi|167751446|ref|ZP_02423573.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702] gi|167655692|gb|EDR99821.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702] Length = 365 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 182/352 (51%), Gaps = 29/352 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58 +K +V+++DIL+ L + K+ I H+ L N ++ +G ++E+ I Sbjct: 2 IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGN----QLTVTGYDLEL--GIK 55 Query: 59 ASVDVCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +++DV G + +++ L+ DIVRK+ G + F E E ++N+ D + + Sbjct: 56 STIDVEGESDGVLVLNSRLICDIVRKMPSG--VIRFDEYE-PLKLNLMCEDITYSIMGIN 112 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E+P E SFE++ +LK+++ +T +A+AT + + L G F I +L + +V Sbjct: 113 SEEYPVLPELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIE 233 DG R+A+ + ++ + +VP K + E+LR+LS +S + VS+ ++ +I+ Sbjct: 173 --DGIRIAIRKESLLHEDFDF---VVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSID 227 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292 ++ RL++G+F NY +I ++ E VN L + VDR ++ + +I++ V + S Sbjct: 228 KYTVFSRLLEGDFFNYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSD 287 Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + L C T +GK + + Y+ I FN +Y+L+ + N D+V Sbjct: 288 NTLRVFCETA----IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKV 335 >gi|309799271|ref|ZP_07693519.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302] gi|308117116|gb|EFO54544.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302] Length = 378 Score = 105 bits (261), Expect = 1e-20, Method: Compositional matrix adjust. Identities = 87/354 (24%), Positives = 174/354 (49%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 ++ GS+ + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNENAGLLINSLGSVLLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLK 170 ++P +E L + +LK ++ T FA +T+E R L G+ F + N ++LK Sbjct: 117 GKDSEQYPRIQEIAASNPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSNHKELK 176 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 177 --TVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLS 289 E++S RL++G +P+ +IP + + + LRQ+++R ++SS VKL Sbjct: 234 RSENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVAKLRQSMERARLLSSATQNGTVKLE 293 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 + + V +P++GK E ++ + + I FN YL+E + ++S++V Sbjct: 294 IKEGIVSAHVHSPEVGKVNEEIDTENVSGADLTISFNPTYLIEALKALNSEKVT 347 >gi|322388481|ref|ZP_08062084.1| DNA-directed DNA polymerase III beta subunit [Streptococcus infantis ATCC 700779] gi|321140794|gb|EFX36296.1| DNA-directed DNA polymerase III beta subunit [Streptococcus infantis ATCC 700779] Length = 378 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IPV + + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQSLNITKRAISSKNAIPVLSTIKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KDENAGLLINSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QHQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLK 170 ++P +E L + +LK ++ T FA + +E R L G+ F + N ++LK Sbjct: 117 GKDSEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLSNHKELK 176 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 177 --TVATDSHRLSQKKLTLEKNSDNF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLS 289 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL Sbjct: 234 RSENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERARLLSSATQNGTVKLE 293 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++GK E ++ + + + I FN YL+E + ++S++V Sbjct: 294 IKQGVVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEKV 346 >gi|255994572|ref|ZP_05427707.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989] gi|255993285|gb|EEU03374.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989] Length = 363 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/341 (25%), Positives = 173/341 (50%), Gaps = 8/341 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T + DI E L + I + T+P+ +L++A + + IK + EI I + Sbjct: 1 MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLKIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V+A L Y+I+RKL +G I FF + +++I + +S F L+ E +FP Sbjct: 61 NDEVGKIIVNAKLFYEIIRKLPEG-NIEFFTDE--SKKLHIKNLNSEFELEYLEEEKFPF 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 KE + F +L N+++++ ++ E + L G++ IN+ + L V +DG+R Sbjct: 118 AKEVKG-EKFSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISL--VGSDGYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + +I+ + K I+VP + + I +IL + +V++ + E I ++ + ++ Sbjct: 175 IAITKENIINEQEK--DILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLK 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G + +Y+ E+ +N +L AV+R+ ++S + + + L Sbjct: 233 LLEGTYIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIET 292 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + D+G A E + + + N K+LL+ I NI +E+ Sbjct: 293 SSDIGYAKEEIILDKMGEDNEFAINCKFLLDAIKNIDGEEL 333 >gi|24378534|ref|NP_720489.1| DNA polymerase III subunit beta [Streptococcus mutans UA159] gi|24376382|gb|AAN57795.1|AE014853_2 putative DNA polymerase III, beta subunit [Streptococcus mutans UA159] Length = 378 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ + L+ L R I KN IP+ + ++ N + + S +I I I A Sbjct: 2 IKFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAE 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V G+I + A+ +IV L D I+ F+E E +V ++ G S L+ Sbjct: 62 EENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIE-QHQVVLNSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ + N ++ K Sbjct: 118 KDVEQYPRLQEVGTNNPLILETKLLKTIISETAFAASTQESRPILTGVHLVLTNHKEFK- 176 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AVATD HR++ ++ + +++P +++ E + + SV+V S S+I Sbjct: 177 -AVATDSHRMSQRKLTLDHSSDDF-DVVIPSRSLREFAAVFTDDIESVEVFFSNSQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E +S RL++G +P+ ++ + + E+ N LR A++R ++S + + VKL + Sbjct: 235 SEYISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++++ V++P++GK E +++ + + I FN YL+E + + S+ V Sbjct: 295 INNQVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKSETVT 347 >gi|22536187|ref|NP_687038.1| DNA polymerase III subunit beta [Streptococcus agalactiae 2603V/R] gi|25010077|ref|NP_734472.1| DNA polymerase III subunit beta [Streptococcus agalactiae NEM316] gi|76787013|ref|YP_328729.1| DNA polymerase III subunit beta [Streptococcus agalactiae A909] gi|76797975|ref|ZP_00780234.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21] gi|77405619|ref|ZP_00782708.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B] gi|77407693|ref|ZP_00784448.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1] gi|77411784|ref|ZP_00788120.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111] gi|77413651|ref|ZP_00789836.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515] gi|22533004|gb|AAM98910.1|AE014191_2 DNA polymerase III, beta subunit [Streptococcus agalactiae 2603V/R] gi|23094428|emb|CAD45647.1| beta subunit of DNA polymerase III [Streptococcus agalactiae NEM316] gi|76562070|gb|ABA44654.1| DNA polymerase III, beta subunit [Streptococcus agalactiae A909] gi|76586655|gb|EAO63154.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21] gi|77160306|gb|EAO71432.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515] gi|77162175|gb|EAO73150.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111] gi|77173692|gb|EAO76806.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1] gi|77175763|gb|EAO78543.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B] Length = 378 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 170/352 (48%), Gaps = 16/352 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L L R I KN IP+ V ++ + + S +I I IPAS Sbjct: 2 IHFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDAIILTGSNGQISIENTIPAS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 V GSI + A +I+ L D ++ F E E ++ ++ G S L+ Sbjct: 62 NENAGLLVTNPGSILLEAGFFINIISSLPD---VTLEFTEIE-QHQIVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P +E L + +LK+++ T FA + +E R L G+ I++ Sbjct: 118 KDVDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNKY-FK 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ + + A ++VP K++ E + + +V+V S+S++ Sbjct: 177 AVATDSHRMSQRTFQL-EKSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 E++S RL++G +P+ ++ + E+ N LR A++R ++S + + V+L + Sbjct: 236 ENISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQ 295 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + V++P++GK E ++ V ++I FN YL+E + + S+ V Sbjct: 296 NETVSAHVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKSETVT 347 >gi|307707900|ref|ZP_07644375.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261] gi|307615965|gb|EFN95163.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261] Length = 378 Score = 105 bits (261), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KGGIVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|21672842|ref|NP_660907.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS] gi|21645890|gb|AAM71249.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS] Length = 374 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 177/356 (49%), Gaps = 23/356 (6%) Query: 35 LQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 L +G+L + A+ E+ IT + G+I + A L D +R + + ++F E + Sbjct: 35 LTLENGMLTMFATDGELSITTNCDVASTDKGNIAIRARTLQDFLRSMYE-TDVTFDIERQ 93 Query: 95 LGTEVNISH--GDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 E+ H D Y + P +++ + S EL + L++++ +T FA + + Sbjct: 94 SIGELGTIHIATDKGRYRIPCTFTTKPESQKRNFDLSIELQQNELQDMIHKTLFACSVDG 153 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 +R + G+ F +EE + AV+TDGHRL +A+ I+VP + + I R+L Sbjct: 154 MRPAMMGVLFEFDEE--YITAVSTDGHRLVRCRKKPGVTVAEKQKIVVPARVLSIIQRML 211 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 ++++ VK+++ R ++ ++ +M + LI +PNY+ VIP N+K+L + + L Sbjct: 212 TNEE--VKMTIDSERRNVKFKTATMELESALIVEPYPNYEAVIPVENEKQLVTDRSQLHD 269 Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYL 329 +V RV SS I +K+S ++ + +N G+ A E + + + I FN K++ Sbjct: 270 SVKRVGRFSS--IGDLKISAQDSQIKVMAENASEGESAQEELPCTFTGEEITIGFNAKFV 327 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +I + ++V + S ++V + K ++ ++ + ++MP+RI Sbjct: 328 EAALSHIET-----EQVSIEMSSPTTAVLFKPKYEERQD------DLIILVMPVRI 372 >gi|147669676|ref|YP_001214494.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1] gi|146270624|gb|ABQ17616.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1] Length = 378 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 91/393 (23%), Positives = 174/393 (44%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS T+ A LL + V L D +S N +NI + +FP Sbjct: 61 IEEEGSTTIPAKLLTEFVSSLPNDKIDLSL---NAKSKALNIKCARFEARITGVDSKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S +++ + V FA A +E R L G+ L L A DG Sbjct: 118 PIPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTLAAA--DGF 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236 RLAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ Sbjct: 176 RLAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIE 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290 + +L+ G FP Y +IP S + ++ A +I + V+L + Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTRVVIDANQFLMATKTATIFARDGGGIVRLMMNPGGDT 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|225016759|ref|ZP_03705951.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum DSM 5476] gi|224950427|gb|EEG31636.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum DSM 5476] Length = 340 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/314 (25%), Positives = 158/314 (50%), Gaps = 10/314 (3%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 +LL+ + L++ ++ IT I G+I ++A L DI+RK+ D QI+ + Sbjct: 4 ILLECENNNLKLTGYDLDLGITKTIQVETVEPGAIVLNARLFSDILRKMPD-EQITITSD 62 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 +L T I D+ F + E+P + F +LKN++ +T FA++ + Sbjct: 63 QKLLTR--IEGIDTEFNILGMSRDEYPDMPAVDDSQGFTAPDYLLKNMINQTLFAISVND 120 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 L G F +N K+ V+ DG+R+A+ + +I + S +VP K + EI ++L Sbjct: 121 QTPVLTGSLFDLNSG--KMSVVSVDGYRVALRKENIASDTDV--SFVVPGKTLAEITKLL 176 Query: 213 SSKDSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 S ++ ++ +VS+ I I ++ RL++GE+ +Y++ IP + + + + Q+ Sbjct: 177 SDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVVQS 236 Query: 272 VDRVSIMSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330 ++R SI+ + R ++ VKL + +T ++ +GK + P+ I FN KY++ Sbjct: 237 IERTSIIINDRNKSPVKLVTEGSTINLTCEST-IGKVSDRFEATVEGDPIRIAFNNKYMI 295 Query: 331 EIIDNISSDEVVDD 344 + + + D++ D Sbjct: 296 DALKHTECDQIYID 309 >gi|193214558|ref|YP_001995757.1| DNA polymerase III subunit beta [Chloroherpeton thalassium ATCC 35110] gi|193088035|gb|ACF13310.1| DNA polymerase III, beta subunit [Chloroherpeton thalassium ATCC 35110] Length = 377 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/327 (26%), Positives = 161/327 (49%), Gaps = 20/327 (6%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN--ISHGDSNFYLQSFPESEFPST 121 G+ +++A D++R + D E E +++ I ++ + + E S Sbjct: 64 SGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFEEESA 123 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 ++ +F ++ L L+++T FA +T+ +R + G+ F I E ++ AV+TDGHRL Sbjct: 124 GSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIR--AVSTDGHRL 181 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSMSV 239 + IIVP + +G I+R L S+D V++S+ + RI + + Sbjct: 182 VKITRNHNTGAEGKLKIIVPSRVLG-IVRKLFSEDGDVEISIDANSQRIRFRMGETILLC 240 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+ +PNY+ VIP NDK + +N +NL +V RV SS V+ + + L ++ Sbjct: 241 SLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSSR--GDVRFHVQENSLAVSA 298 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +N D G A ES+ Y + + I FN K++ + + ++++ +EV+F+ S + Sbjct: 299 ENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNA-----EEVIFQFSSPTRAAI 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I K ++ N + ++MP+RI Sbjct: 354 ILPKQEEDANE-----DVLMLVMPVRI 375 >gi|78187986|ref|YP_378324.1| DNA polymerase III, beta chain [Chlorobium chlorochromatii CaD3] gi|78170185|gb|ABB27281.1| DNA polymerase III, beta subunit [Chlorobium chlorochromatii CaD3] Length = 374 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 21/357 (5%) Query: 32 HVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK 91 H L+ N L + + E+ IT I G I ++A L D +R + D + Sbjct: 34 HFTLEPN--ALTLFGTDGELSITAKIEVESTDSGHIGINARTLQDFLRSMYDTPVTLSIE 91 Query: 92 ENELGTE--VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 E+ V ++ + + ES+ P ++ Y + +L +S L LV++T FA + Sbjct: 92 RQEISDHGMVEVTTDKGRYKIVCLFESK-PERYDKVYDITLDLPTSELLGLVQKTLFACS 150 Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 + +R + G+ F + E + AVATDGHRL + IA+ I++P + + + Sbjct: 151 IDGMRPAMMGVLFEL--EGTTITAVATDGHRLVRCRKESSLDIAEKQKIVLPARVLSILQ 208 Query: 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 ++ + ++ VS + + + LI +PNY VIP +DK + +N + Sbjct: 209 KLAQHESITMCVSTDRRFVRFISGHMILDAALIVEPYPNYNAVIPVEHDKNVVINRQSFY 268 Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKY 328 +V RV SS I ++L L +D+L + +N G+A E + YN PM I FN K+ Sbjct: 269 DSVRRVGRFSS--IDDIRLILENDRLTVMAENTSDGEAAQEELPCSYNGEPMTIGFNAKF 326 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ D+E++ L S ++V + + +++ ++MP+RI Sbjct: 327 VEAALAHLD-----DEEILIELKSPTTAVIF------TSSKIEDRDKLIILVMPVRI 372 >gi|331693901|ref|YP_004330140.1| DNA polymerase III subunit beta [Pseudonocardia dioxanivorans CB1190] gi|326948590|gb|AEA22287.1| DNA polymerase III, beta subunit [Pseudonocardia dioxanivorans CB1190] Length = 376 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 175/394 (44%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK VER + + R + + +PV VL++ + G + SG + E + + Sbjct: 1 MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIEGGGDPGAETLTVSGFDYETSARVE 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSF 113 A+V G + VS LL DI R L K +L G+ I+ G+S F L + Sbjct: 61 LDATVGDPGQVLVSGRLLADITRALPS-------KPVDLVVDGSRATINCGNSRFSLPTM 113 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P ++P + +A+ VL + V + A ++ L G+ I E +L Sbjct: 114 PVEDYPQLPAMPQ-RAGSVAADVLASAVAQVAVAAGRDDTLPMLTGVRLEI--EGSRLTL 170 Query: 174 VATDGHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLN 231 ATD RLAV E+D + + ++++P + + ++ + LS + + +S + + + Sbjct: 171 AATDRFRLAVRELDWEPEDPSASTAVLIPARTLADVAKALSGSGTVEIALSAGDGMLGMT 230 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+D EFP ++ +IP + + L +A+ RV++++ R+ ++L Sbjct: 231 GSGRRATTRLLDAEFPRFRQLIPAESTTNAEIEVATLVEAIKRVALVAD-RVAQIRLEFG 289 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D L + D+G A E + P+ I FN YLL+ + + ++ V ++ F Sbjct: 290 EDGLRLAAGGDDVGSAEEEIPCALQGEPLTIAFNPSYLLDALGALHTERV---QLSF--T 344 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N R D N ++LMP+R+ Sbjct: 345 TPNRPALARPVVADDAANP----GYLHLLMPVRL 374 >gi|293364517|ref|ZP_06611242.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis ATCC 35037] gi|306826188|ref|ZP_07459523.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307702807|ref|ZP_07639757.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037] gi|315612158|ref|ZP_07887073.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis ATCC 49296] gi|331265440|ref|YP_004325070.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5] gi|291317025|gb|EFE57453.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis ATCC 35037] gi|304431664|gb|EFM34645.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307623663|gb|EFO02650.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037] gi|315315719|gb|EFU63756.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis ATCC 49296] gi|326682112|emb|CBY99728.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5] Length = 378 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KGGVVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNSEKVT 347 >gi|324991865|gb|EGC23788.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK405] gi|324996245|gb|EGC28155.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK678] gi|325698031|gb|EGD39912.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK160] gi|327458489|gb|EGF04839.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1] gi|327471609|gb|EGF17052.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK408] Length = 378 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 169/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ +V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSNVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|298376463|ref|ZP_06986418.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] gi|298266341|gb|EFI07999.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] Length = 370 Score = 104 bits (260), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 22/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I++ ++ +L L +II K++ P+ CH L + +G L I S E IT ++ Sbjct: 1 MTISISKTALLSRLQLLAKIIPAKSSTPILCHFLFKTREGRLFITGSNSEGRITTSLECI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D SI V LL + + I K+ E+ I + F + + S +P Sbjct: 61 FDEEISICVPTSLLEGLRNLPEQPIDIIINKDTR---EIRIKYHGGKFEVVGYDPSTYPG 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + S L++ L N + + ++IR L+ +F E +C V DGH Sbjct: 118 KRSIEVLDSVSLSAEDLFNGISKVINLAGNDDIRPVLSSVFIETEPE--TVCFVGADGHG 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLSMS 238 + Q+ K+ S+I+ R + IL SS + ++V S + LN +S Sbjct: 176 MGFLRKGNDRQVGKI-SVIISRPIASVLKAILPASSDNMEMRVGADWSDVILN--DYEIS 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R ++G +PN++ V+P +N EL V+ L A+ R S+ S+ + L + DKL + Sbjct: 233 FRNVEGRYPNWKAVVPKANKLELLVDTGQLIGAIKRTSVFSNKASCLIVLRIIRDKLTVF 292 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ V +N I LLEI+ I D+ RL S S Sbjct: 293 AQDIDFSTSAEETLEVDFNGNEFSIGIKGSLLLEILSCI-------DDGRTRLSFSEPSR 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ N++ Y+LMPM I Sbjct: 346 AILITPENQSGNEE----LTYLLMPMTI 369 >gi|206972508|ref|ZP_03233452.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] gi|206732532|gb|EDZ49710.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] Length = 376 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTIFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I I Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|322377904|ref|ZP_08052392.1| DNA polymerase III, beta subunit [Streptococcus sp. M334] gi|321281080|gb|EFX58092.1| DNA polymerase III, beta subunit [Streptococcus sp. M334] Length = 378 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|229150900|ref|ZP_04279111.1| DNA polymerase III, beta subunit [Bacillus cereus m1550] gi|228632460|gb|EEK89078.1| DNA polymerase III, beta subunit [Bacillus cereus m1550] Length = 376 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 180/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ N +GK E+ + E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I +K + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEKSA---------AVHLISPVR 374 >gi|284928718|ref|YP_003421240.1| DNA polymerase III subunit beta [cyanobacterium UCYN-A] gi|284809177|gb|ADB94882.1| DNA polymerase III, beta subunit [cyanobacterium UCYN-A] Length = 391 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 87/364 (23%), Positives = 172/364 (47%), Gaps = 28/364 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++D L R + + T P+ +VL+ A+ +++ K S +++ I S Sbjct: 1 MKFVCSQNDFSNNLSLVSRAVPTRPTHPILANVLMVAD--IVKQKISLTAFDLSLGIETS 58 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSF 113 D G T+ A LL DIV +L +G +IS E + N+ + F +++ Sbjct: 59 FDANISEGGQTTLPAKLLNDIVSRLPEG-EISLISEETKDNQTNLLYLKSASGKFQIRTI 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 EFP E EL + + + FA + +E++ L G+ + L+ A Sbjct: 118 SADEFPPLPMIENDDFIELPTITITEGLRGVLFASSNDELKQVLTGVHLKGTADSLEFAA 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMP------------SIIVPRKAVGEILRILSSKD--SSV 219 TDGHRL+V E ++I S+ +P KA+ E+ +I+ + + + Sbjct: 178 --TDGHRLSVVEAMFSSEIDNKKEQTLKTKNSNEFSVTIPAKALRELEKIIHNNNDFEVI 235 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 ++ + + ++ + +++R +DG +P Y +IP + + ++ N +++RV++++ Sbjct: 236 QLQIDDLQVIFYLGKQKLTIRKLDGNYPKYSMLIPQKFEHVISLDRKNFLNSLERVAVLA 295 Query: 280 SVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 S + VK ++ K + ++V+ D+G A ES+ DI FN KYL++ + +S Sbjct: 296 SQKNNLVKCVFNNKKQIILLSVETQDLGSAEESIEAKITGESGDIAFNIKYLMDGLKALS 355 Query: 338 SDEV 341 + E+ Sbjct: 356 TKEI 359 >gi|229070157|ref|ZP_04203421.1| DNA polymerase III, beta subunit [Bacillus cereus F65185] gi|228712975|gb|EEL64886.1| DNA polymerase III, beta subunit [Bacillus cereus F65185] Length = 376 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QTIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|229178968|ref|ZP_04306326.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W] gi|228604525|gb|EEK61988.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W] Length = 376 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I I Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|254414533|ref|ZP_05028299.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] gi|196178763|gb|EDX73761.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] Length = 400 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 95/415 (22%), Positives = 198/415 (47%), Gaps = 47/415 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+T +S++ L R + + T PV +VLL+A+ + + + A + + + Sbjct: 1 MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLKADAENQRVSLTAFDLSLGLQTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFF-----KENELGTE---VNISHGDSNFYL 110 A+V+ G+I + A L DIV +L +G I+ E++ TE + ++ + + Sbjct: 61 ANVEADGAIAIPAKLFNDIVSRLPEG-DITLEDSLSEAESDADTESLSITLTSTSGQYKM 119 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + +FP + E +L L + + FA + +E + L G+ + E+ L+ Sbjct: 120 RGMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSLE 179 Query: 171 LCAVATDGHRLAVAEV-------DIVAQIAKMPS---------IIVPRKAVGEILRILSS 214 A TDGHRLAV E + + + P+ + VP + + E+ R+L Sbjct: 180 FAA--TDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGL 237 Query: 215 KDSSVKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 +SS V+L +I + ++ R ++G++P Y+ +IP +++ + L AV Sbjct: 238 SESSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAV 297 Query: 273 DRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330 +R+++++ + VK + + + +TV+ D+G A ES++ ++I FN KYL+ Sbjct: 298 ERIAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLI 357 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S+ ++ F+++++N+ V + + Y++MP++I Sbjct: 358 DGLKALST-----SDIQFQMNAANTPVIL---------TPLGGLKMTYLIMPVQI 398 >gi|322386431|ref|ZP_08060060.1| DNA-directed DNA polymerase III beta subunit [Streptococcus cristatus ATCC 51100] gi|321269517|gb|EFX52448.1| DNA-directed DNA polymerase III beta subunit [Streptococcus cristatus ATCC 51100] Length = 378 Score = 104 bits (259), Expect = 2e-20, Method: Compositional matrix adjust. Identities = 84/350 (24%), Positives = 167/350 (47%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISTKNAIPILSTVKIDVTKEGITLIGSNGQISIENFISVQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V GSI + A+ +++ L D + FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVTSPGSILLEANFFINVISSLPD--IVLDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + VLKN++ T FA +T+E R L G+ F + + L Sbjct: 119 DADQYPRIQEVSTSNPLVLETKVLKNIINETAFAASTQESRPILTGVHFVLTDNQ-SLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + + +++P +++ E + + + +V+V + +++ E Sbjct: 178 VATDSHRMSQKKITLDKKGDDF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQLLFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP + N NLR A++R ++S + + VKL + Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFSSVVTFNTNNLRHAMERSRLLSNATQNGTVKLEIVK 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V +P++G+ E ++ + + I FN YL+E + + S++V Sbjct: 297 GIVSAHVHSPEVGRVNEEIDTESVSGEDLTISFNPTYLIEALKAVDSEKV 346 >gi|317123179|ref|YP_004097291.1| DNA polymerase III subunit beta [Intrasporangium calvum DSM 43043] gi|315587267|gb|ADU46564.1| DNA polymerase III, beta subunit [Intrasporangium calvum DSM 43043] Length = 375 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + +PV VLL+A DG L + A E+ +PA Sbjct: 1 MKFRVERDVLAEAVTWVARGVPARPPVPVLAGVLLEAAEDGTLTLSAFDYEVSARITVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + V LL +I R L I + GT++N++ G S F L+ P +++P Sbjct: 61 DVAEAGQVLVLGRLLAEISRNLP-AKPIDISTD---GTKLNVTCGSSRFSLREMPVADYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S +A V V + A + L G+ + E K+ +ATD + Sbjct: 117 TLPAAPE-PSGTIAGDVFTQAVAQVSIAADRGDTLPILTGVRMEV--EGDKIVLLATDRY 173 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES--LS 236 RLA+ E+ A A ++P + + E + L + S + E+ Sbjct: 174 RLAMRELTWSPASPAASHVALIPARQLSETAKALGASGSVQIALGGGGDGLIGFEAGQRQ 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL+DGE+P ++ P S D E + L +AV RV++++ R V L + ++ Sbjct: 234 ATTRLLDGEYPKVTSIFPSSVDTEAVIETAALEEAVKRVALVAE-RNTPVLLKFTDGQVA 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A E++ + + I FN +YLL+ + + + F S + Sbjct: 293 IEAGTGDDAQASEAVEAVLHGPEIQIAFNPQYLLDGLHAVGQPW---SRLSF-TQPSRPA 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V + DS + + YVLMP+R Sbjct: 349 VLTGQAEADSDTDASYR----YVLMPVR 372 >gi|296167142|ref|ZP_06849549.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897464|gb|EFG77063.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 399 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL +D L I E+ + A Sbjct: 13 LKFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLSGSDEGLTISGFDYEVSAEAQVAAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DI R L + + F+ + G V ++ G + F L + ++P+ Sbjct: 73 IASPGSVLVSGRLLSDITRALPN-KPVDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 128 Query: 121 TK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 EE + L + + + + A ++ L GI I+ + L ATD Sbjct: 129 LPVLPEE---TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGNTVVLA--ATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230 RLAV E+ A + +++VP K + E R + S V++SL + + + Sbjct: 184 FRLAVRELTWAASSPDIEAAVLVPAKTLAEAARA-GADGSEVRLSLGAGSGVGKDGLLGI 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S L ++ D+G+A E + V + P+ I FN YL + + + S + V F Sbjct: 302 SEGSLRLSAGADDVGRAEEDLAVDFVGEPLTIAFNPTYLTDGLAAVHS-----ERVSFGF 356 Query: 351 DSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385 + +R DS D A Y+LMP+R+ Sbjct: 357 TTPGKPALLRPASADDSPPTGDGPFAALPTDYVYLLMPVRL 397 >gi|315222843|ref|ZP_07864728.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211] gi|315188079|gb|EFU21809.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211] Length = 378 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 176/352 (50%), Gaps = 18/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 INFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISI 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 V GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNENAGLLVTSSGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L +SVLKN++ T FA +T+E R L G+ F + E L Sbjct: 117 GKDADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENK-NL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HR++ ++ ++ + +++P +++ E + + +V++ + +++ Sbjct: 176 KTVATDSHRMSQKKI-VLEKNGDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E++S RL++G +P+ +IP + + NLR A++R ++S + + VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++G+ E ++ + + I FN YL++ + I+S++V Sbjct: 295 INGVVSAHVNSPEVGRVNEEIDTESISGQNLTISFNPTYLIDSLKAINSEKV 346 >gi|307705908|ref|ZP_07642746.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597] gi|307620569|gb|EFN99667.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597] Length = 378 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KDGIVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|229079875|ref|ZP_04212407.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2] gi|228703459|gb|EEL55913.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2] Length = 376 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QTIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELANNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|291558312|emb|CBL35429.1| DNA polymerase III, beta subunit [Eubacterium siraeum V10Sc8a] Length = 365 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 94/352 (26%), Positives = 182/352 (51%), Gaps = 29/352 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58 +K +V+++DIL+ L + K+ I H+ L N ++ +G ++E+ I Sbjct: 2 IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGN----QLTVTGYDLEL--GIK 55 Query: 59 ASVDVCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +++DV G + +++ L+ DIVRK+ G I F E E ++N+ D + + Sbjct: 56 STIDVEGESDGVLVLNSRLICDIVRKMPSG--IIRFDEYE-PLKLNLMCEDITYSIMGIN 112 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E+P E SFE++ +LK+++ +T +A+AT + + L G F I +L + +V Sbjct: 113 SEEYPVLPELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIE 233 DG R+A+ + ++ + +VP K + E+LR+LS +S + VS+ ++ +I+ Sbjct: 173 --DGIRIAIRKESLLHEDFDF---VVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSID 227 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292 ++ RL++G+F +Y +I ++ E VN L + VDR ++ + +I++ V + S Sbjct: 228 KYTVFSRLLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSD 287 Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + L C T +GK + + Y+ I FN +Y+L+ + N D+V Sbjct: 288 NTLRVFCETA----IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKV 335 >gi|193211678|ref|YP_001997631.1| DNA polymerase III subunit beta [Chlorobaculum parvum NCIB 8327] gi|193085155|gb|ACF10431.1| DNA polymerase III, beta subunit [Chlorobaculum parvum NCIB 8327] Length = 374 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/352 (25%), Positives = 172/352 (48%), Gaps = 23/352 (6%) Query: 39 DGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE---- 94 +G L + A+ E+ IT + G+I + A L D +R + D +++F E + Sbjct: 39 NGTLTMFATDGELSITAKCDVASSDKGTIAIRARTLQDFLRSMYD-TEVTFEIERQSIGD 97 Query: 95 LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 LGT V+I+ + + S+ P + E + + L S L++++++T FA + + +R Sbjct: 98 LGT-VHIATDKGRYRIPCTFISK-PESLERNFDLTIGLQPSELQDIIQKTLFACSVDGMR 155 Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 + G+ F E + AVATDGHRL +IA+ I+VP + + I R+L + Sbjct: 156 PAMMGVLFEF--EGTVITAVATDGHRLVRCRKQTTNEIAEKQKIVVPARVLSIIQRLLQN 213 Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 + S+ V + E++ + LI +PNY+ VIP N+K+L V+ + +V R Sbjct: 214 DEVSMTVDEERRNVKFKSENVELESALIVEPYPNYEAVIPVENEKKLVVDRGLIHDSVKR 273 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEII 333 V SS I +K+S + + + +N G+ A E + + + I FN K++ + Sbjct: 274 VGRFSS--IGDLKISAEGELMKVMAENASEGESAQEELPCTFTGEEITIGFNAKFVEAAL 331 Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +I + ++V + S ++V + K ++ ++ + ++MP+RI Sbjct: 332 SHIET-----EQVSMEMSSPTTAVLFKPKYEERQD------DLIILVMPVRI 372 >gi|228939801|ref|ZP_04102379.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972690|ref|ZP_04133290.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979275|ref|ZP_04139613.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407] gi|228780476|gb|EEM28705.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407] gi|228787055|gb|EEM35034.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819897|gb|EEM65944.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940453|gb|AEA16349.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar chinensis CT-43] Length = 376 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280 >gi|150020433|ref|YP_001305787.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429] gi|149792954|gb|ABR30402.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429] Length = 366 Score = 104 bits (259), Expect = 3e-20, Method: Compositional matrix adjust. Identities = 90/325 (27%), Positives = 162/325 (49%), Gaps = 30/325 (9%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPSTKE 123 G V A LL +IV+ + D QI F ++G V + G S+F L + E + FP + Sbjct: 66 GKFAVDAKLLEEIVKNV-DTEQILF--SYDMGKLV-LKSGKSSFNLSTHSEPDKFPQIEL 121 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 EE FEL +S+L +++R F +TE LNG+++ L+L VA+DG+RLA+ Sbjct: 122 EESGIKFELETSILSEMIDRVLFCASTESAMRALNGVYWEAKGGYLRL--VASDGYRLAL 179 Query: 184 AE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240 E V+I A I+ K++ E+ ++ D + V ++ ++ +++ +R Sbjct: 180 TEQKVNIDADF----DFILSLKSMKELDNLIKQTDEPILTVKFDHKKVWISAGDITVIMR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +++ FP+Y+ V+P + N +A+ R+ I+S + V+L ++ + L + Sbjct: 236 IVEEVFPDYKRVLPKVFKTRIIFNKEEFLEALKRIMIISKRGDEKVRLQINDNILVLNSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +P+ G+ E +++ + I FN K+L E + I +DEVVF S + I Sbjct: 296 SPEYGEVNEEISIEQEGEDLSINFNPKFLNEAVKKIE-----EDEVVFNFVDDLSPMQIN 350 Query: 361 GKDKDSKNNKDNKVNAF-YVLMPMR 384 KD VN + Y+++P+R Sbjct: 351 SKD----------VNEYLYIVLPVR 365 >gi|289610241|emb|CBI60296.1| unnamed protein product [Sordaria macrospora] Length = 125 Score = 103 bits (258), Expect = 3e-20, Method: Composition-based stats. Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 3/127 (2%) Query: 46 ASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105 A+ +++I I A++D G+ITVSAH L+DI RKL +GAQ+ + + + G Sbjct: 2 ATDLDLQIDETIAAAIDQAGAITVSAHTLFDIARKLPEGAQVQL---SAAEGRLTVVAGR 58 Query: 106 SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 + F L + P +FP E E FEL ++ LK ++++T FA++TEE RYYLNGIF H+ Sbjct: 59 ARFSLATLPRDDFPVIAEGELPTQFELPATTLKAIIDKTRFAISTEETRYYLNGIFLHVA 118 Query: 166 EEDLKLC 172 E C Sbjct: 119 EMTASRC 125 >gi|125716889|ref|YP_001034022.1| DNA polymerase III subunit beta [Streptococcus sanguinis SK36] gi|125496806|gb|ABN43472.1| DNA polymerase III, beta chain, putative [Streptococcus sanguinis SK36] Length = 378 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEITG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|325689355|gb|EGD31361.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK115] Length = 378 Score = 103 bits (258), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|194476875|ref|YP_002049054.1| DNA polymerase III subunit beta [Paulinella chromatophora] gi|171191882|gb|ACB42844.1| DNA polymerase III subunit beta [Paulinella chromatophora] Length = 394 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 97/412 (23%), Positives = 194/412 (47%), Gaps = 47/412 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T P+ +VLL AN GLL + + I +I Sbjct: 1 MKLVCSQTELNTSLQLVSRAVATRPTHPILANVLLTANAETGLLSLTGFDLNLGIQISIS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF--FKENELGTEVNISHGDSNFYLQSFPES 116 ASV+ G+IT+ + LL +IV +L + I+ K E + ++ + ++S P + Sbjct: 61 ASVETSGAITLPSRLLGEIVSRLSNEGPITISDMKGQE---RIELTSISGTYQMRSMPAA 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +FP L + L + T FA + +E + L G+ +L+ CA AT Sbjct: 118 DFPDLPLIVSGIPVRLEAEALIRGLRGTIFATSNDEAKQVLTGVHLCFTNHELE-CA-AT 175 Query: 177 DGHRLAVAEV------DIVAQIAKMP-----------SIIVPRKAVGEILRILSSKDSSV 219 DGHRLAV + D++ + ++ ++ +P +++ E+ R+LS + Sbjct: 176 DGHRLAVLRLANAVTEDLLIKAEEIKETEEEDGIEDFAVTLPARSLKELERLLSGHPTKE 235 Query: 220 KVSLSESR---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 VSL +R + L + ++ R +DG +P Y+ +IP + + + L A++RV+ Sbjct: 236 AVSLFYNRGQAVFLWANQI-LTSRTLDGIYPAYKGLIPDHFTRSIALERKALISALERVA 294 Query: 277 IMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 +++ V+L + +LC++ D ++G E M ++I FN +Y+L+ + Sbjct: 295 VLAGQHNNVVRLEGDPMTRQLCISADAQEIGSGSEEMLAIITGGCIEIAFNVRYMLDGLK 354 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 ++ D+ + +SSN+ + +++F Y++MP+++ Sbjct: 355 AMT-----DERIEILCNSSNTPAIL---------TPQGDMHSFMYLIMPIQV 392 >gi|332365095|gb|EGJ42860.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK355] Length = 378 Score = 103 bits (257), Expect = 4e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NCSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|291531950|emb|CBK97535.1| DNA polymerase III, beta subunit [Eubacterium siraeum 70/3] Length = 365 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 93/352 (26%), Positives = 182/352 (51%), Gaps = 29/352 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58 +K +V+++DIL+ L + K+ I H+ L N ++ +G ++E+ I Sbjct: 2 IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGN----QLTVTGYDLEL--GIK 55 Query: 59 ASVDVCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +++DV G + +++ L+ DIVRK+ G + F E E ++N+ D + + Sbjct: 56 STIDVEGESDGVLVLNSRLICDIVRKMPSG--VIRFDEYE-PLKLNLMCEDITYSIMGIN 112 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E+P E SFE++ +LK+++ +T +A+AT + + L G F I +L + +V Sbjct: 113 SEEYPVLPELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIE 233 DG R+A+ + ++ + +VP K + E+LR+LS +S + VS+ ++ +I+ Sbjct: 173 --DGIRIAIRKESLLHEDFDF---VVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSID 227 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292 ++ RL++G+F +Y +I ++ E VN L + VDR ++ + +I++ V + S Sbjct: 228 KYTVFSRLLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSD 287 Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + L C T +GK + + Y+ I FN +Y+L+ + N D+V Sbjct: 288 NTLRVFCETA----IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKV 335 >gi|325695761|gb|EGD37660.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK150] gi|332363607|gb|EGJ41388.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1059] gi|332364165|gb|EGJ41942.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK49] Length = 378 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|156740759|ref|YP_001430888.1| DNA polymerase III subunit beta [Roseiflexus castenholzii DSM 13941] gi|156232087|gb|ABU56870.1| DNA polymerase III, beta subunit [Roseiflexus castenholzii DSM 13941] Length = 377 Score = 103 bits (257), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 85/350 (24%), Positives = 167/350 (47%), Gaps = 13/350 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ + ++ L + K+T+PV ++L+ ++DG L++ A+ EI IT I A Sbjct: 1 MKLSCLQENLKRGLAVVSHAVAGKSTLPVLSNILIASDDGRLKLAATNLEIGITCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++ V A LL D+V L + +I + T +N+ ++ EFP+ Sbjct: 61 IEEEGAVAVPAKLLSDVVGSLPND-RIDLTLDGRTQT-LNLKCARFESNIKGTESGEFPA 118 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++L+ +++ FA +TEE R L G+ + D + A DG Sbjct: 119 IPTVDNRTPTAVFPPTLLRETIQQVAFAASTEETRPVLQGVQLRL--RDNRAIFAAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK--VSLSESRIHLNIESLSM 237 RLA V++ +A+ +I+P +A+ E+ RIL+ +S V+ V+ S ++ + ++ + Sbjct: 177 RLAQRIVELPEPVAQPQDLIIPARALNELARILNDDESQVEMIVTHSGGQVLFHTSTVDL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291 RLIDG++P+ VIP ++ L +AV S + +V+L L Sbjct: 237 VSRLIDGKYPDVDRVIPQQYQTRAVLDTQELTKAVKLASYFTVAPSNSVRLHMEPGGDLG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ ++ + D+G ++ I N K+L + I I + ++ Sbjct: 297 PGRMTISANAVDVGDNKGQVDAMIEGEGGQIALNVKFLSDAIAAIPTPQL 346 >gi|228953017|ref|ZP_04115078.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806635|gb|EEM53193.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 376 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G++ V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKVGTMVVPAKYFIEIIKKMP--SDIAIKSKNE--QTIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|328945175|gb|EGG39330.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1087] Length = 378 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEITG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|194335184|ref|YP_002016978.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307661|gb|ACF42361.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 374 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 181/389 (46%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + + +G + I K P +V L G L + A+ E+ IT Sbjct: 1 MKLTSSIRQLQDAIGKVAQAIPAKTIDPRFENVHLSIESGSLTLFATDGELSITAKSDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I V A L D +R + D A ++F E + ++ H ++ P +F S Sbjct: 61 TSDSGNIGVKARTLQDFLRSMYDTA-VTFVIERQEISDHGTLHITTDKGKYKIP-CQFES 118 Query: 121 TKEEE---YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +E+ Y S EL ++ +L+++T FA + + +R + G+ F + E + AV+TD Sbjct: 119 KQEKHEKTYDISLELETAEFLDLIQKTIFACSVDGMRPAMMGVLFEL--EGNTITAVSTD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRL + + I + I++P + + + ++ + ++ + + I ++ + Sbjct: 177 GHRLVRCRKNYNSAIGEKQKIVIPARVLSILQKLAQHEFITMSIDSDRRFVRFIIGNIVL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 LI +PNY VIP +DK L ++ + + +V RV SS I VK+ + L + Sbjct: 237 DASLIIEPYPNYDAVIPVEHDKHLIIDRSMIYDSVRRVGRFSS--IGDVKMVIEGQLLKV 294 Query: 298 TVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +N + G+A E M Y + I FN +++ + ++ D+E+ L S ++ Sbjct: 295 MAENTNEGEAAQEEMPCLYTGDDITIGFNSRFIEAALAHLD-----DNEIRIELKSPTTA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V K K +D+K+ ++MP+RI Sbjct: 350 VIF----KPHKTEEDDKL--IVLVMPVRI 372 >gi|254413972|ref|ZP_05027740.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] gi|196179108|gb|EDX74104.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] Length = 391 Score = 103 bits (256), Expect = 5e-20, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 184/405 (45%), Gaps = 36/405 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+T D+ L +CR + + + P+ ++LL A + + + A + I Sbjct: 1 MKLTCSSVDLQTHLSLSCRAVPSRPSHPILGNILLSACSDTQQIHLTAFNLSLGIKTRFL 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-------VNISHGDSNFYLQ 111 A ++ G +T+ A L DIV L +G + TE + ++H + + Sbjct: 61 AHIETGGQVTIPAKLFQDIVSHLPEGDITVSVQPEPQETEDADPSWMITLTHASGRYQFK 120 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +FP +S ++ +S L V+ + A +T+E + L G+ + + L+ Sbjct: 121 GTNPEDFPQLPAINGGHSLQIPTSSLSEGVQSSLVATSTDEAKQVLCGVHLTVQPDFLEF 180 Query: 172 CAVATDGHRLAVA-------EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSL 223 A TDGHRLAVA E + + P+ + +P K + E+ RILS+ ++L Sbjct: 181 AA--TDGHRLAVAQTATQVTETETTDEAQAEPTQLTIPTKTLTELDRILSTSKPENPIAL 238 Query: 224 --SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 + ++ + +S ++ R ++G++P Y+ +IP + V L +A++R++I++ Sbjct: 239 YYCQGQVIFDAQSAYLTSRTLEGQYPEYRALIPKKFKNHITVEKRQLLKALERIAILADP 298 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + ++L+L ++ + + G E + + ++I FN +YL+E + + Sbjct: 299 KNKVIRLTLDKKNQHVLLTTATENGTGQEVIPAQISGKDLEIAFNSQYLIEGLKVTKT-- 356 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +++ ++S + N Y+LMP++I Sbjct: 357 ---SDIRLQINETHSPAIL---------TPLGGQNLTYLLMPVQI 389 >gi|307710360|ref|ZP_07646801.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564] gi|307618952|gb|EFN98087.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564] Length = 378 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 85/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ ++ L R I KN IP+ V + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFIQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KGGVVSAHVHSPEVGKVNEEIDTEQVTGEDLTISFNPTYLIDSLKALNSEKVT 347 >gi|326799125|ref|YP_004316944.1| DNA polymerase III subunit beta [Sphingobacterium sp. 21] gi|326549889|gb|ADZ78274.1| DNA polymerase III, beta subunit [Sphingobacterium sp. 21] Length = 374 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 165/344 (47%), Gaps = 8/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + D L I A+ + + ++ Sbjct: 1 MRFIVSTSTLLKQLQAVNGASSSSTVLPILENFLFEIKDNSLTISATDLQTSMITSLQVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V A +L + ++ L D Q F + + IS GD + L +FP Sbjct: 61 SKEEGKVAVPAKILIETLKTLPD--QPIAFSVDTQTFAIEISAGDGKYKLSGENADDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +SVL + +T FA++ +E+R + G+ + ++ V+TD H+ Sbjct: 119 IPVVENPSTVRIPASVLSEAISKTIFAVSNDELRPAMTGVLCQLTPQNTTF--VSTDAHK 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L D+ ++ ++ S+I+P+KA+ + L S+D V V + + ++ + Sbjct: 177 LVRYRRADVKSE--QVTSMILPKKALTLLKSSLPSEDVDVAVEYNNTSAFFKFGNIHLIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID +P+Y+ VIP N +L ++ L ++ RV I ++ V+L ++ +L ++ Sbjct: 235 RLIDERYPDYEAVIPQVNPNKLTIDRLLLLNSLRRVVIFANKTTHQVRLRITGSELNISS 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D +A E ++ Y +I FN K+L+E++ N+ +EVV Sbjct: 295 EDLDFANEAHERLSCQYEGEDTEIGFNAKFLIEMLSNLECEEVV 338 >gi|322375217|ref|ZP_08049731.1| DNA polymerase III, beta subunit [Streptococcus sp. C300] gi|321280717|gb|EFX57756.1| DNA polymerase III, beta subunit [Streptococcus sp. C300] Length = 378 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 84/353 (23%), Positives = 172/353 (48%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + + ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLESSFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ + I FN YL++ + ++S++V Sbjct: 295 KGGVVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNSEKVT 347 >gi|290968153|ref|ZP_06559698.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781828|gb|EFD94411.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str. 28L] Length = 371 Score = 103 bits (256), Expect = 6e-20, Method: Compositional matrix adjust. Identities = 102/390 (26%), Positives = 187/390 (47%), Gaps = 27/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T+ + D+ + L +I + K N + S LL+A ++EI+A+ E+ I +P Sbjct: 1 MKLTLTKEDLNKGLQTIAKIAQSKTNNLQSSNGFLLKALHNVIEIQANDYEMGIKTIVPG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ G ++ L +++ KL D Q+ + + T++ I G F + S+F Sbjct: 61 IIEEPGETFIANPYLIELIHKLPSDSVQLC---KKDTDTKLLIIGGSVKFECATMNISDF 117 Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + E Y+ F S +LK+L++ T FA +T R G H++ E ++ VATD Sbjct: 118 NEVEIVESGYAQFTTNSIILKDLIDHTSFACSTNTERPIFMGT--HLDVEKNRINMVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SL 235 HRLA+ I + +P + + EI R L D V+++ R +L I ++ Sbjct: 176 THRLALKTYMSETPITTPIKVTIPSRLLMEISRNLPI-DIPEPVTITAVRNYLAIRFSNV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDK 294 + RLI+GE+P Y+ VIP + + AV+RVS ++ + + +K S S ++ Sbjct: 235 YIKTRLIEGEYPKYERVIPKDFQCTVTTDRAAFTSAVERVSLVVQNPQYNLIKFSFSQNQ 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + +PD G + + + I FN KY+L+++ + ++++ + R + Sbjct: 295 IKLMSRHPDYGVVEDLVACDMTGEDLTISFNSKYILDLLKHCHEEKII---INLR---TQ 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S V I+ KD S +V+ PMR Sbjct: 349 SPVLIKDKDDSS---------CVFVVTPMR 369 >gi|327467737|gb|EGF13231.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK330] Length = 378 Score = 103 bits (256), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAD 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|332359495|gb|EGJ37314.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1056] Length = 378 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 82/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V++ + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEIFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL ++ Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|291278434|ref|YP_003495269.1| DNA polymerase III subunit beta [Deferribacter desulfuricans SSM1] gi|290753136|dbj|BAI79513.1| DNA polymerase III, beta subunit [Deferribacter desulfuricans SSM1] Length = 369 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 82/341 (24%), Positives = 165/341 (48%), Gaps = 9/341 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++D+ EL+ HA KN V ++ ++A + IK++ + TG Sbjct: 1 MKFKCIKNDLQELVQHANNFTTTKNINTVLQNLFIEAEGNTITIKSTNLQTAFTGKFETE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV A L +I+++L DG I G+++ I G S F L + FP+ Sbjct: 61 IIESGTTTVPAKKLLEILKELPDGNIID---AEFTGSKLVIKSGKSIFTLSTISPEYFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATDGH 179 E Y L S V K+++E+ +F ++ + + Y G HI K+ A D Sbjct: 118 VSEIVPEYFIRLKSDVFKSMLEKVNFCISNDHSKVEYTGG---HIKVFGNKIELSAADFQ 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 ++A+AE + + +I VP+K V E++++L + V++ + + I ++++ Sbjct: 175 KIAIAESKFDEEFSDEFTINVPKKTVNELIKLLDYSE-YVEIETDKKQALFKINNITIYT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ + + + ++ + +V RVS ++S A S ++DKL + Sbjct: 234 KLIEKYIQSLSKLFDIQPKITVSIHKESFLNSVKRVSTLTSDITHAAVFSFNTDKLDIYS 293 Query: 300 DNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSD 339 + G+ ES+ + Y P++I N K+++E++++I+++ Sbjct: 294 LETEYGQGYESIEGITYEGEPIEIILNTKHVIEVMNHINTE 334 >gi|306828595|ref|ZP_07461789.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis ATCC 6249] gi|304429203|gb|EFM32289.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis ATCC 6249] Length = 378 Score = 102 bits (255), Expect = 7e-20, Method: Compositional matrix adjust. Identities = 88/356 (24%), Positives = 175/356 (49%), Gaps = 24/356 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLK 170 ++P +E L + +LK ++ T FA +T+E R L G+ F + N ++LK Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSNHKELK 176 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 177 --TVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLS 289 E++S RL++G +P+ +IP + + + NLR +++R ++SS VKL Sbjct: 234 RSENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRHSMERARLLSSATQNGTVKLE 293 Query: 290 LSSDKLCMTVDNPDMGKA---IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + V +P++GK I++ V N+ + I FN YL++ + ++S++V Sbjct: 294 IKGGVVSAHVHSPEVGKVNEEIDTEQVTGND--LTISFNPTYLIDSLKALNSEKVT 347 >gi|228965621|ref|ZP_04126702.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228794029|gb|EEM41551.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280 >gi|294101017|ref|YP_003552875.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM 12261] gi|293615997|gb|ADE56151.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM 12261] Length = 383 Score = 102 bits (255), Expect = 8e-20, Method: Compositional matrix adjust. Identities = 97/402 (24%), Positives = 180/402 (44%), Gaps = 49/402 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKA-----------SGP 49 M++ V + D +++ R+ K+TI +L + +D L ++A SG Sbjct: 1 MRLQVSKPDFMKIWQTTERVTSTKSTITSLAGILCRTDDASLTLEATDLKTSIKCIASGV 60 Query: 50 EIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109 +IE G V V G + A V +++G I F G + + Sbjct: 61 QIEEGGEAILPVKVVGELFKKAPTDTFTV-SVKEGKGIIF-------------AGRNTYR 106 Query: 110 LQSFPESEFPSTKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 ++P EFP E F A ++ + L E T + EE YL F + Sbjct: 107 FSTYPVEEFPHLPSSENAKFFCTVKAETLAQILSEGTVASTLGEEFPKYLGAALFELKGN 166 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSE 225 D+++ V+TDG RL++++V ++ + I++P + E+LR LSS D V++ + Sbjct: 167 DIRI--VSTDGRRLSLSKV-LLDEYGDTEKILLPLAGLKELLRQLSSLEGDKPVQILHDD 223 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM--SSVRI 283 + + + + S+R I+ FPNY+ ++ + L + + L +A++RV ++ R+ Sbjct: 224 ALAYFQMGDIEFSIRKIESSFPNYEKILNPQSTTTLTIERSALTEALERVDVVVRDHTRM 283 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 KLS + D L M P++G+A E ++ + P+ I FN YLL+ + + + V Sbjct: 284 VIFKLSPNGD-LRMMGRAPEIGEAEEILDAQIDGEPLLIAFNVAYLLDGLKALHGESVF- 341 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + F S+ G+D + Y+LMP+++ Sbjct: 342 --ITFNGPEGQMSMLRPGRD-----------DFLYMLMPIKL 370 >gi|313205876|ref|YP_004045053.1| DNA polymerase iii, beta subunit [Riemerella anatipestifer DSM 15868] gi|312445192|gb|ADQ81547.1| DNA polymerase III, beta subunit [Riemerella anatipestifer DSM 15868] gi|315022188|gb|EFT35216.1| DNA polymerase III beta subunit [Riemerella anatipestifer RA-YM] gi|325336683|gb|ADZ12957.1| DNA polymerase III, beta subunit [Riemerella anatipestifer RA-GD] Length = 376 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 158/345 (45%), Gaps = 6/345 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S++ + L +I + P+ + L + ++ L+I +S E + ++ Sbjct: 1 MKFIVASSELQKALQVVSGVISSSQSRPILENYLFELDNQNLKITSSDGETTLVTSLEVM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPESEF 118 + G I V A ++++ + KE NE+G + I N+ + ++ Sbjct: 61 SEDQGKIAVPAKTFQELIKTFGEQPLTFTVKESANEMGALLEILDDRDNYEVALDNAEDY 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + S + S VL + T FA + + +R + G+ F E + V+TD Sbjct: 121 PELPEFDASQSVTIPSGVLAEALVNTLFATSNDTLRPVMTGVLFQFGENEANF--VSTDS 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL V + + + I+P+K + IL++ + V + +E+ + Sbjct: 179 HRLVVYKRKDIKNSEPI-EFIMPKKPLSIFKNILANTEEEVVIEFNENMAKFTFGNHIWI 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY VIP N L VN L ++ R SI+S+ V+ LS + L + Sbjct: 238 CRLIDGKYPNYSAVIPQENPNLLTVNRNLLLSSIRRASILSNKSTNQVRFKLSGNILHLH 297 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ + KA + Y ++I F+ K+L E++ +SSD+V+ Sbjct: 298 AEDTEFANKADMQIPCDYKGEDINIGFSSKFLTEMLSVLSSDDVL 342 >gi|229190784|ref|ZP_04317777.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876] gi|228592654|gb|EEK50480.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876] Length = 376 Score = 102 bits (255), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|218897702|ref|YP_002446113.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228901233|ref|ZP_04065431.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222] gi|218540909|gb|ACK93303.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228858404|gb|EEN02866.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222] Length = 376 Score = 102 bits (254), Expect = 9e-20, Method: Compositional matrix adjust. Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280 >gi|288922085|ref|ZP_06416290.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] gi|288346562|gb|EFC80886.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] Length = 391 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/406 (24%), Positives = 180/406 (44%), Gaps = 38/406 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 M++TV+R + +L+ A R + K T + V +LL+A+ L + A E+ TGA Sbjct: 1 MRLTVDRDSLADLVPWAARTLPSKATTQLQVLAGLLLEADGSALRVSAYDYEVATTGAAD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V G V+ +L D+V+ L A++ + GT + I+ G ++F L P ++ Sbjct: 61 ARVVEEGRALVNGKMLADLVKSLPK-ARVELAVD---GTRLTITSGSASFKLPMLPSEDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + V + A ++ L GI + + + L A TD Sbjct: 117 PALPPMPDLLG-TVDAGLFVTAVGQVGIAAGRDDTLPVLTGIRVEFSPKTITLAA--TDR 173 Query: 179 HRLAVAEVDI-VAQIAKMP-SIIVPRKAVGEILRILS----------SKDSSVKVSLSES 226 +RLAV + A A + ++++P + + +I R K + + S + Sbjct: 174 YRLAVRTIPWEPAPDADLTLTLLIPARTLSDIARAAGEGRITIAAAGQKKAEGRGSGEPA 233 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ + RLI+G FP Y+ ++P S V L AV RV++++S R V Sbjct: 234 SAGFDVAGRQTTTRLIEGTFPPYRKLLPDSTPLIAEVEIPPLAAAVKRVALVAS-RTAPV 292 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L+ + L + +A E++ V Y+ + + FN YLL+ ++ + DD V Sbjct: 293 QLTFAPGLLALEAGAGGEAQASETLAVAYDGPELKVSFNPAYLLD-----AAGAIEDDLV 347 Query: 347 VFRLDSSNSSV------FIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385 F + + + GK D D + Y+LMP+R+ Sbjct: 348 RFGFATEEPEIAAVKPAILTGKTGGDPAEIPDYR----YLLMPIRL 389 >gi|229110137|ref|ZP_04239713.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] gi|228673329|gb|EEL28597.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] Length = 376 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDVK--ANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E ++I F+ +++++ + I + + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEETI 345 >gi|296503248|ref|YP_003664948.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] gi|296324300|gb|ADH07228.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] Length = 376 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDVK--ANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E ++I F+ +++++ + I + + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEETI 345 >gi|183980037|ref|YP_001848328.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M] gi|183173363|gb|ACC38473.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M] Length = 402 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 182/404 (45%), Gaps = 35/404 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL +D L I E+ +PA Sbjct: 13 LKFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VS LL DI R L + + F+ + G V ++ G++ F L + ++P+ Sbjct: 73 IASPGTVLVSGRLLSDITRALPN-KPVDFYVD---GNRVALTCGNARFSLPTMAVEDYPT 128 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T E+ + L + + + + A ++ L GI I+ E K+ ATD Sbjct: 129 LPTLPED---TGTLPAELFSEAIGQVAIAAGRDDTLPMLTGIRVEISGE--KVVLAATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230 RLAV E+ A + +++VP K +GE + ++ S V++SL + + + Sbjct: 184 FRLAVRELTWNALSPDIEAAVLVPAKTLGEAAKA-NTDGSEVRLSLGAGMGVGKDGLLGI 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + + RL+D EFP ++ ++P + + L +A+ V++++ R V++ Sbjct: 243 SGDGKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVAD-RGAQVRMEF 301 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + L ++ D+G+A E + V + P+ I FN YL++ + ++ S + V F Sbjct: 302 ADGMLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGF 356 Query: 351 DSSNSSVFIR---GKDKDSKNNKDNKVNA------FYVLMPMRI 385 + +R +D+ D A Y+LMP+R+ Sbjct: 357 TTPGKPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRL 400 >gi|32266625|ref|NP_860657.1| DNA polymerase III subunit beta [Helicobacter hepaticus ATCC 51449] gi|32262676|gb|AAP77723.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 353 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 86/346 (24%), Positives = 167/346 (48%), Gaps = 27/346 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ +S + +L + +++++ ++ H+ +A D L +KA+ EI + I Sbjct: 1 MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYINIP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV+ + DI+++L+D K++ L +IS G + L F EFP Sbjct: 61 CQAQGNATVNGKQILDIIKRLKDDNVTIETKQDSL----HISQGKARTKLPMFNADEFPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + S N +++ + A+ T +Y LNG I +D VATD R Sbjct: 117 FPEYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDI--KDYSFNFVATDTRR 174 Query: 181 LAVAEVDIVAQIAKMPSI-----IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 LA+ E K PSI ++P+KA+ EI ++ ++++ + + + L Sbjct: 175 LALIEY-------KNPSINALSLVIPKKAINEIQKLFV---DTLEIYHNPTHLILKNNDY 224 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR-QAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LI G++P+Y+ +IP KE + + + VD + + S+ +K++LS ++ Sbjct: 225 TFYTKLISGKYPDYEKIIP----KEFKHKIVLPKDKFVDALQFVKSLA-NNIKITLSPNE 279 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + N + G+A + V N + + N KY+L+ + I ++E Sbjct: 280 VLFESLNEESGEASTQIEVQTNIENLTLGINSKYILDFLSQIDANE 325 >gi|295108628|emb|CBL22581.1| DNA polymerase III, beta subunit [Ruminococcus obeum A2-162] Length = 371 Score = 102 bits (254), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 90/390 (23%), Positives = 188/390 (48%), Gaps = 30/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++L+ + + + + K T+P+ +L+ A ++ + E+ I + Sbjct: 1 MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + A + Y+I+R+L D N + T I+ + F + +F Sbjct: 61 IEEKGMVALDAKIFYEIIRRLPDNDVTITTDSNYVAT---ITCEKAKFTIPGKAGEDFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK ++ +T F++A E + G F I + LK+ ++ DGHR Sbjct: 118 LPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCLKI--ISLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + + I+VP K +GEI +ILS + D V + +++ I + + Sbjct: 176 ISIRKMPLKREYSDR-KIVVPGKTLGEISKILSGEIDDQVNIYFTKNHILFEFDQTMVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDKLC 296 RLI+GE+ ++ D ++ VN +DR +++ VR + + + ++ + Sbjct: 235 RLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLL--VREGDKKPIVIEITDGSME 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNS 355 + +D+ MG E +++ + + I FN K+L++ + +V+DDEV+ L + + Sbjct: 293 LKIDSA-MGSMNEEIDIEKSGKDIVIGFNPKFLIDAL------KVIDDEVINMYLMNPKA 345 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 FIR D++ N Y+++P+ I Sbjct: 346 PCFIR----------DDEENYTYLILPVNI 365 >gi|262281646|ref|ZP_06059415.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA] gi|262262100|gb|EEY80797.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA] Length = 378 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 175/354 (49%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 INFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISI 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + V GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 NNENAGLLVTSLGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P ++ L + +LK+L+ T FA + +E R L G+ F + + L Sbjct: 117 GKDADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLTDHK-NL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ I+ + +++P +++ E + S + +V+V + +I Sbjct: 176 KTVATDSHRLSQKKI-ILEKNGDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E++S RL++G +P+ +IP + + LR A++R ++S + + VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKA---IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ I++ NV + + I FN YL+E + ++S++V Sbjct: 295 EGGVVSAHVNSPEVGRVNEEIDAENVSGDN--LTISFNPTYLIEALKAVNSEKV 346 >gi|149174463|ref|ZP_01853089.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797] gi|148846573|gb|EDL60910.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797] Length = 376 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 96/391 (24%), Positives = 172/391 (43%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK++ RS +L +I + V L+A DG + + E+ I Sbjct: 1 MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTE-VNISHGDSNFYLQSFPESE 117 V V G I +S H L I+R+ D +I K+ E + + I G S F L SE Sbjct: 61 EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + FE+ + ++ RT FA E RY L G+ F + E KL ATD Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDV--EGDKLTLAATD 178 Query: 178 GHRLAVAEVDIVAQIAKM-----PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 G RLA+ E Q ++ P ++P KA+ I + L+ + ++++++ + + + Sbjct: 179 GRRLAMVESACSYQGSEAYENNRP--VIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKS 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ RL++G FP Y++VIP + + AV + I++ V + V SS Sbjct: 237 GRSTIFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSS 296 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L + +G++ + + + + I F+ +YL + + + S + +L Sbjct: 297 GLLTLKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAA----HIRLQLID 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S+S+ ++ D + YV+MP+ Sbjct: 353 SDSAAVLKTDDGYT-----------YVIMPL 372 >gi|309811337|ref|ZP_07705124.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185] gi|308434644|gb|EFP58489.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185] Length = 378 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 179/396 (45%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K+ VER + E + A R + ++ +PV VLL+A+ L + A E+ + A Sbjct: 3 VKLRVERDVLAEAVAWAVRGLSQRPPVPVLAGVLLEASPEGLTLSAFDYEVSAKVTVDAD 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ V LL DI + L I E G++V ++ G + F LQS P E+P+ Sbjct: 63 VEEAGTVLVLGRLLADITKSLPH-KPIELISE---GSKVQVTCGSAKFSLQSMPTGEYPT 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +A V V + A + L G+ ++ KL +ATD +R Sbjct: 119 LPANPDPTGV-IAGDVFTQAVAQVSVAADRGDTLPILTGVRVEVSGN--KLTLLATDRYR 175 Query: 181 LAVAEV-----DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 LA+ EV D A+ A + VP + + + + L + +V +SLS + + Sbjct: 176 LAMREVMWNAGDEGAEYAAL----VPARTLDSLAKSLGAA-GNVSLSLSGASTGSGLAGF 230 Query: 236 S-----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 M+ RL+DG++P ++ P S D V L +A RVS+++ R V+L Sbjct: 231 EAGQRRMTTRLLDGDYPKVTSLFPTSVDTTAIVETAQLAEACKRVSLVAE-RNMPVRLRF 289 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + D + + + +A E+ + ++I F+ ++LL+ + + + V RL Sbjct: 290 AEDSVRIEAGTGEDAQASETFEAKIDGPELEIAFSPQFLLDGLGVVGTKYV-------RL 342 Query: 351 DSSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + G+D+ + D+ Y++MP+R Sbjct: 343 GFTQPTRPAVLSGQDEIDGDADDSY---RYLIMPVR 375 >gi|157151517|ref|YP_001449324.1| DNA polymerase III subunit beta [Streptococcus gordonii str. Challis substr. CH1] gi|157076311|gb|ABV10994.1| DNA polymerase III, beta subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 378 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 88/354 (24%), Positives = 174/354 (49%), Gaps = 22/354 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 INFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISV 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + V GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 NNENAGLLVTSLGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P ++ L + +LK+L+ T FA + +E R L G+ F + + L Sbjct: 117 GKDADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLTDHK-NL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ I+ + +++P +++ E + S + +V+V + +I Sbjct: 176 KTVATDSHRLSQKKI-ILEKNGDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E++S RL++G +P+ +IP + + LR A++R ++S + + VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKA---IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ I++ NV + I FN YL+E + ++S++V Sbjct: 295 EGGVVSAHVNSPEVGRVNEEIDAENVSGEN--LTISFNPTYLIEALKAVNSEKV 346 >gi|327463835|gb|EGF10151.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1057] Length = 378 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL + Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIVG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|169823699|ref|YP_001691310.1| DNA polymerase III subunit beta [Finegoldia magna ATCC 29328] gi|302380135|ref|ZP_07268608.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|303234446|ref|ZP_07321084.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4] gi|167830504|dbj|BAG07420.1| DNA polymerase III beta subunit [Finegoldia magna ATCC 29328] gi|302312077|gb|EFK94085.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|302494401|gb|EFL54169.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4] Length = 367 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 84/343 (24%), Positives = 172/343 (50%), Gaps = 14/343 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + ++L+ + A + + + TI + +L A + L + A+ E+ + Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I +++ ++ +I+RKL D +N +NI + F +Q +EFPS Sbjct: 61 IYEKGQIVINSSMIGNIIRKLPDADIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L S L++ + +T FA + ++ R L G+ F+I + ++ VA DG+R Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEF--VALDGYR 174 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 ++ +D ++ +++ IVP +A+ E+ +IL ++ + +++ I +E+ + Sbjct: 175 VS---LDCLSNVSEFEMKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLIDG++ +Y V+ + + L+ A++R S+M+ + VKL S ++L ++ Sbjct: 230 RLIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHIS 289 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N D+GK E + + I FN KYLL+ + I D++ Sbjct: 290 -SNTDIGKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVIDDDDI 331 >gi|227539239|ref|ZP_03969288.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|300770712|ref|ZP_07080591.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium spiritivorum ATCC 33861] gi|227240921|gb|EEI90936.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|300763188|gb|EFK60005.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 374 Score = 102 bits (253), Expect = 1e-19, Method: Compositional matrix adjust. Identities = 85/344 (24%), Positives = 164/344 (47%), Gaps = 8/344 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + D L I A+ + + ++ Sbjct: 1 MRFIVSTSILLKQLQAISGASSSSTVLPILENFLFEIKDNTLTISATDLQTSMVTSLQIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + + +L + ++ L D N L E IS GD + L +FP Sbjct: 61 SKEEGRVAMPSKILIETLKTLPDQPVAFSVDTNTLAIE--ISAGDGKYKLSGENADDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + VL + +T FA++ +E+R ++G+ + E+ V+TD H+ Sbjct: 119 IPTVDNTSTVNIPAPVLAEAINKTIFAVSNDELRPAMSGVLVQLAEQSTTF--VSTDAHK 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L DI K S+I+P+KA+ + L S D +V + + + ++ + Sbjct: 177 LVRYRRTDIYTD--KPASLILPKKALSLLKSSLPSDDVNVTIEYNNTNAFFQFGNIFLIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID +P+Y+ VIP N +L V+ + + RV I ++ V+L +S +L ++ Sbjct: 235 RLIDERYPDYEAVIPQVNPNKLTVDRSLFLNTLRRVVIFANKTTHQVRLRISGSELNISA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ D +A E ++ + M+I FN K+L+E+++N+SS+EV+ Sbjct: 295 EDLDFSNEAHERLSCQFEGDDMEIGFNAKFLVEMLNNLSSEEVI 338 >gi|262200048|ref|YP_003271256.1| DNA polymerase III subunit beta [Gordonia bronchialis DSM 43247] gi|262083395|gb|ACY19363.1| DNA polymerase III, beta subunit [Gordonia bronchialis DSM 43247] Length = 388 Score = 102 bits (253), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 98/406 (24%), Positives = 182/406 (44%), Gaps = 41/406 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 MK V R + + + R + + +PV V+L A+DGL SG + E++ +I Sbjct: 1 MKFRVARDEFADSVAWVARSLPSRPPVPVLGCVVLGADDGL---TISGFDYEVSAQESIA 57 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115 A + G + VS LL DI + L + K ++ G V I+ G + F L + P Sbjct: 58 AEIAEPGQVLVSGRLLADITKALPN-------KPVDVTLDGARVAIACGSAKFSLPTMPV 110 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P + + S + + + + + A ++ L G+ I + L A Sbjct: 111 EDYPQLPDVPAI-SGTIPTQLFAEAISQVAIAAGRDDTLPMLTGVRVEIEGSTVVLAA-- 167 Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS---------E 225 TD RLAV E+ +++VP K + E + ++ + V VSL+ + Sbjct: 168 TDRFRLAVRELQWEPTDPDTSGAVLVPAKTLSESAKTAGAEGTGV-VSLAFGNGSAIGND 226 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + E+ + RL+D EFP ++ ++P S+ ++ L +A+ RV++++ R Sbjct: 227 GILGILGETKRTTTRLLDAEFPKFRQLLPASHTAIATIDSAPLIEAIKRVALVAE-RGAQ 285 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V+L + +T + GKA E + V + + I FN YLL+ + I++D VD Sbjct: 286 VRLEFGEGSVLLTAGGDEAGKAEEELPVQFAGEALTIAFNPGYLLDGLSAINAD-TVD-- 342 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKV-----NAF-YVLMPMRI 385 F + + +R + ++ +AF Y+LMP+R+ Sbjct: 343 --FGFTTPSRPAVLRPSSGEQPAADESGAFAAPESAFTYLLMPVRL 386 >gi|319945981|ref|ZP_08020230.1| DNA-directed DNA polymerase III beta subunit [Streptococcus australis ATCC 700641] gi|319747789|gb|EFW00034.1| DNA-directed DNA polymerase III beta subunit [Streptococcus australis ATCC 700641] Length = 378 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 85/351 (24%), Positives = 167/351 (47%), Gaps = 14/351 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 2 INFSINKAYFLQALNTTKRAISSKNAIPILSTIKIDVTSEGITLIGSNGQISIEYFISVK 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V G+I + A ++V L D + KE E V +S G S L+ Sbjct: 62 DENAGLLVTTPGAILLEATFFINVVSSLPD--VVLDVKEIEQKQIVLVS-GKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L LK ++ T FA +T+E R L G+ F +++ +L Sbjct: 119 DAEQYPRIQEISASNPLTLPIQTLKKIISETAFAASTQESRPILTGVHFVLSDHK-ELKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ + + +++P +++ E+ + S + V+V + ++I + Sbjct: 178 VATDSHRMSQKNITLEKNGDNF-DVVIPSRSLRELTSVFSDEIEQVEVFFANNQILFRSD 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP E+ +LRQA++R ++S + + VKL ++S Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFSSEVTFKVAHLRQAMERARLLSNATQNGTVKLEIAS 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V++P++G+ E ++ + ++I FN YL++ + I S++VV Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTEAVSGDDLNISFNPTYLIDALKAIESEKVV 347 >gi|119964048|ref|YP_945835.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1] gi|119950907|gb|ABM09818.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1] Length = 374 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 102/392 (26%), Positives = 185/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + E + R + + +PV +LL+A G + + + E IPA Sbjct: 1 MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + V G+I VS LL DI R L A + + G++V ++ S+F+L + PESE+P+ Sbjct: 61 IAVEGTILVSGRLLADICRSLPS-APVEVETD---GSKVTLTCRRSSFHLATMPESEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L V + A + ++ L G+ I E+DL + +ATD +R Sbjct: 117 LPALPAI-SGTLPGDAFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173 Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236 LA+ EV + I+ S +V K + E+ + L S D ++ ++ +SR+ + ES Sbjct: 174 LAMREVPWKPVTPGIST--SALVKSKTLNEVAKTLGGSGDINLALADDDSRL-IGFESGG 230 Query: 237 MSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P +++ P S V L +AV RVS+++ R V+L+ + Sbjct: 231 RTTTSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTQGL 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + +A E + + + + FN YL+E + I + V F ++ Sbjct: 290 LNLDAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIET-----KYVRFSFTTAP 344 Query: 355 SSVFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385 I + + D ++ D + Y++MP+R+ Sbjct: 345 KPAMITAQAEADGEDQDDYR----YLVMPVRL 372 >gi|297588056|ref|ZP_06946700.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC 53516] gi|297574745|gb|EFH93465.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC 53516] Length = 367 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 84/343 (24%), Positives = 172/343 (50%), Gaps = 14/343 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + ++L+ + A + + + TI + +L A + L + A+ E+ + Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I +++ ++ +I+RKL D +N +NI + F +Q +EFPS Sbjct: 61 IYEKGQIVINSSMIGNIIRKLPDDDIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L S L++ + +T FA + ++ R L G+ F+I + ++ VA DG+R Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEF--VALDGYR 174 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 ++ +D ++ +++ IVP +A+ E+ +IL ++ + +++ I +E+ + Sbjct: 175 VS---LDCMSNVSEFEMKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLIDG++ +Y V+ + + L+ A++R S+M+ + VKL S ++L ++ Sbjct: 230 RLIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHIS 289 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N D+GK E + + I FN KYLL+ + I D++ Sbjct: 290 -SNTDIGKVDEYVKCEIGGEDLKIAFNAKYLLDGLKVIDDDDI 331 >gi|117927213|ref|YP_871764.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B] gi|117647676|gb|ABK51778.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B] Length = 387 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 105/404 (25%), Positives = 188/404 (46%), Gaps = 38/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V+R + + + R + + ++PV +L++A D L I + E+ + +I A+ Sbjct: 1 MRFQVDRGLFADAVAWSARTLPARPSMPVLGGLLIEAMDEL-RIASFDYEVSASASIDAT 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 + G VS LL +I R L AQ + EL G+ + I+ G S F L P E+P Sbjct: 60 IAETGRALVSGRLLAEISRNLP--AQP---VDVELDGSRLVIACGASRFTLPLLPIEEYP 114 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + + V + A ++ L G+ I+ + + L A TD + Sbjct: 115 NLPPLPTLAG-TIGADLFATAVSQVVVAAGRDDTLPVLTGVRMEIDRDVMTLAA--TDRY 171 Query: 180 RLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLS-ESRIHLNIESL 235 RLAV D Q A+ + ++P + +GE+ + L++ + V + LS ES + N+ Sbjct: 172 RLAVR--DFHWQPARGDLTAAALIPARTLGEVAKALTTG-AEVTIFLSTESTSNENLIGF 228 Query: 236 S---------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 S + RLIDGE+ Y++++P +V L +AV RVS+++ R V Sbjct: 229 SGRGTSGERQTTTRLIDGEYVKYRSLLPAEAAATAQVATAALIEAVRRVSLVAP-RTSPV 287 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD----ICFNYKYLLEIIDNISSDEVV 342 +L+ + D+L + D +A E ++ + D I FN YLL+ + + S Sbjct: 288 RLTFNPDRLTLEAGTGDDAQASEWIDARFESSTGDDEFVIAFNPAYLLDGLGAVES---- 343 Query: 343 DDEVVFRLDSSNSSVFIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385 + S N +R GKD D+ + + + Y+LMP+R+ Sbjct: 344 -ETTTLSFTSPNKPAVLRAGKDADTSADAGSD-DYRYLLMPVRL 385 >gi|327490339|gb|EGF22126.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1058] Length = 378 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 62 NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + +LK+++ T FA + +E R L G+ F + + + L Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ + +++P +++ E + + + +V+V + ++I E Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 ++S RL++G +P+ +IP L N ++LR A++R ++S + + VKL + Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIIG 296 Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341 + V++P++G+ E ++ + I FN YL++ + I S++V Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346 >gi|229045382|ref|ZP_04192044.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] gi|228724982|gb|EEL76277.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] Length = 376 Score = 101 bits (252), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISIKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDVK--ANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ + E ++I F+ +++++ + I + + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEETI 345 >gi|116668570|ref|YP_829503.1| DNA polymerase III subunit beta [Arthrobacter sp. FB24] gi|116608679|gb|ABK01403.1| DNA polymerase III, beta subunit [Arthrobacter sp. FB24] Length = 374 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + R + + +PV +LL+A G + + + E IPA Sbjct: 1 MKFRVERDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + V G+I VS LL DI R L A + + G +V ++ S+F+L + PE+E+P Sbjct: 61 ISVEGTILVSGRLLADICRSLP-SAPVDVETD---GNKVTLTCRRSSFHLATMPEAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + V + A + ++ L G+ I E+DL + +ATD +R Sbjct: 117 LPALPTI-SGTVPGDSFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173 Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLS 236 LA+ EV + I+ S +V K + E+ + L S D ++ ++ +SR+ + ES Sbjct: 174 LAMREVPWKPVTPGIST--SALVKAKTLNEVAKTLGNSGDINLALADDDSRL-IGFESGG 230 Query: 237 MSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P +++ P + V L +AV RVS+++ R V+L+ + + Sbjct: 231 RTTTSLLVDGDYPKIRSLFPDATPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTDGQ 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + +A E + + + FN YL+E + I + V F ++ Sbjct: 290 LHLDAGTGEDAQASEELEAQLTGDEITVAFNPHYLIEGLSVIET-----KFVRFSFTTAP 344 Query: 355 SSVFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385 I + D D ++ D + Y++MP+R+ Sbjct: 345 KPAMITAQVDADGEDQDDYR----YLVMPVRL 372 >gi|153811987|ref|ZP_01964655.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174] gi|149831886|gb|EDM86972.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174] Length = 371 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 194/401 (48%), Gaps = 52/401 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++L+ + + + + K T+P+ +L+ A ++ + E+ I + Sbjct: 1 MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-SFPESEF- 118 ++ G + + A + Y+I+R+L D +V I+ DSNF + +++F Sbjct: 61 IEEKGMVALDAKIFYEIIRRLPDN-------------DVTIT-TDSNFVATITCEKAKFT 106 Query: 119 -PSTKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 P E++ Y S L+ LK ++ +T F++A E + G F I + L Sbjct: 107 IPGKAGEDFAYLPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCL 166 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRI 228 K+ V+ DGHR+++ ++ + + + I+VP K + EI +ILS + D V + +++ I Sbjct: 167 KI--VSLDGHRISIRKMPLKKEYSDR-KIVVPGKTLSEISKILSGEIDDQVSIYFTKNHI 223 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQA 285 + + RLI+GE+ ++ D ++ VN +DR +++ VR + Sbjct: 224 LFEFDQTMVVSRLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLL--VREGDKKP 281 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + + + + + +D+ MG E +++ + + I FN K+L++ + +V+DDE Sbjct: 282 IVIEIKDNSMELKIDSA-MGSMNEEIDIEKDGKDILIGFNPKFLIDAL------KVIDDE 334 Query: 346 VV-FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V+ L + + FIR D++ N Y+++P+ I Sbjct: 335 VIHMYLMNPKAPCFIR----------DDEENYTYLILPVNI 365 >gi|260592336|ref|ZP_05857794.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319] gi|260535723|gb|EEX18340.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319] Length = 322 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/329 (24%), Positives = 159/329 (48%), Gaps = 21/329 (6%) Query: 60 SVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++D C G V++ + D V++L + +E+ + +G NF + Sbjct: 6 NLDSCEGEGDFAVNSQTILDAVKELPEQPLALDVNFDEMKIYITYQNGSYNFPI--LGAD 63 Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P + + S + ++ L + + R+ FA A +E+R +NGI+F + + L + VA Sbjct: 64 EYPRVQPISDNASSITIDAAKLSDSINRSIFATAQDELRPVMNGIYFDLTSDSLAI--VA 121 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 +DGH+L V + + + I+P+K + +L+ V + E ++ Sbjct: 122 SDGHKL-VRNKNFSIKSETPSAFILPKKPATLLKTVLAKDGGDVVIRFDERFADISFADG 180 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++S RLI+G++PNY +VIP N + ++ +L A+ RV +S Q ++ +S+ L Sbjct: 181 NLSCRLIEGKYPNYNSVIPQDNPNRITIDRKSLIGALRRVLPFASDSSQLIRFHVSTGLL 240 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D A ES+ Y+ M I F +LEI++N+ SD+V V+ D S Sbjct: 241 ELNAEDIDFSTSAKESVTCEYDGNAMSIGFKGSSMLEILNNLESDDV----VIQLADPSR 296 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + V + G +++ + ++MPM Sbjct: 297 AGVIVPGVQPENE-------DVLMLIMPM 318 >gi|288916709|ref|ZP_06411084.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] gi|288351964|gb|EFC86166.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] Length = 386 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 95/399 (23%), Positives = 178/399 (44%), Gaps = 29/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER + + + R + + T + V +LL A L++ A E+ G + Sbjct: 1 MKFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGEVD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ +L DI R L A + + GT + ++ G++ F L P ++ Sbjct: 61 ATVTEEGRGLVNGKMLADITRSLP-AAPVDVSVD---GTRLVVACGNARFALPMLPVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + + V + A ++ L G+ I+ + L L A TD Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTLAA--TDR 173 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV + + +VP + + + + LS V ++L E+ Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGTGVEVAIALGTGPSGETLAGFAG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL++G FP Y+ ++P S+ ++ L +AV RV++++ R V+L+ + Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVAP-RTAPVQLTFTP 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD- 351 D L + +A E++ V Y+ + + FN YLL+ + + SD V + F D Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPTYLLDALGALESDIV---RIGFASDE 349 Query: 352 ----SSNSSVFIRGKDKDSKNN-KDNKVNAFYVLMPMRI 385 ++N + GK D + D + Y+LMP+R+ Sbjct: 350 DPALAANKPAILTGKGGDDQTEIPDYR----YLLMPIRL 384 >gi|32476252|ref|NP_869246.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1] gi|32446796|emb|CAD76632.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1] Length = 444 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 27/292 (9%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 + IS S F L EFPS E + ++++ + ++ RT FA +E RY L Sbjct: 169 IKISGSRSKFRLPGNNPDEFPSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALG 228 Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSK 215 G+ + E + AV TDG RLA E + + IVP +A+G I R LS K Sbjct: 229 GVLLEMEEN--SVIAVGTDGRRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEK 286 Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDR 274 D V+V+ + + + +S RL++G +PN++ V+P N ++ V L A+ + Sbjct: 287 DDFVEVASRGNDLLIRTPRAVISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQ 346 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE--- 331 +I++ + + V + + L + D+G++ + + Y+ + + +++YL + Sbjct: 347 AAIVTDLDSRGVDFTFADGTLKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCK 406 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++DN S+ VV ++S+ S ++ D + YV+MPM Sbjct: 407 VMDNEST-------VVMEIESAKSPALLQTDDGYA-----------YVIMPM 440 >gi|326692340|ref|ZP_08229345.1| DNA polymerase III, beta subunit [Leuconostoc argentinum KCTC 3773] Length = 377 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 82/340 (24%), Positives = 164/340 (48%), Gaps = 19/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++ L R I + TIP+ ++ + + L + S +I I I S Sbjct: 1 MQFSINRQVFIKSLNDVSRAISSRTTIPILTNIKIVLSQDELILTGSNSDISIEKRIEQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G IT+ A +IV+ L D ++ G +I+ G S F + Sbjct: 61 DTSAQLVIGSTGGITLPATFFANIVKNLPADDLTLAVD-----GLRASITSGASAFTING 115 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P E + V S ++++ L +++ +T + +T+E R L GI +N D+K Sbjct: 116 QDVRNYPQLPELDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK-- 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AV TD HRL+ V + A++ + +I+P K+ E+ +L +D V + L++++ + Sbjct: 174 AVTTDSHRLSQRIVTLTGTDAQVNADVIMPAKSFNELQSLLEGQD-RVDIKLAKNQAVFD 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + + RL++G +P +IP + +L ++ L A++R S++S R V+L++ Sbjct: 233 LGHTTFYSRLLEGNYPETDRLIPTESTTQLTIDAGTLLGAINRASLLSHESRNNVVQLTM 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 + + +T + ++G+ E + E ++I FN Y+ Sbjct: 293 TDGVVTLTGTSQEVGQVQEELQTTSVEGENLEISFNPDYV 332 >gi|213581271|ref|ZP_03363097.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 170 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 4/171 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR 168 >gi|327542303|gb|EGF28790.1| DNA polymerase III, beta subunit [Rhodopirellula baltica WH47] Length = 440 Score = 101 bits (251), Expect = 2e-19, Method: Compositional matrix adjust. Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 27/292 (9%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 + IS S F L EFPS E + ++++ + ++ RT FA +E RY L Sbjct: 165 IKISGSRSKFRLPGNNPDEFPSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALG 224 Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSK 215 G+ + E + AV TDG RLA E + + IVP +A+G I R LS K Sbjct: 225 GVLLEMEEN--SVIAVGTDGRRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEK 282 Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDR 274 D V+V+ + + + +S RL++G +PN++ V+P N ++ V L A+ + Sbjct: 283 DDFVEVASRGNDLLIRTPRAVISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQ 342 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE--- 331 +I++ + + V + + L + D+G++ + + Y+ + + +++YL + Sbjct: 343 AAIVTDLDSRGVDFTFADGTLKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCK 402 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++DN S+ VV ++S+ S ++ D + YV+MPM Sbjct: 403 VMDNEST-------VVMEIESAKSPALLQTDDGYA-----------YVIMPM 436 >gi|71914140|gb|AAZ54042.1| DNA polymerase III, beta subunit [Thermobifida fusca YX] Length = 372 Score = 101 bits (251), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 95/383 (24%), Positives = 173/383 (45%), Gaps = 29/383 (7%) Query: 14 LGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIPASVDV--CGSITV 69 + R + + ++PV +LL A+D G + S + E++ + VD+ G I V Sbjct: 6 VAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVSVDVDIDEPGRILV 65 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 S LL +IVR L + + G +V +S G + F + + P ++P+ + Sbjct: 66 SGKLLAEIVRNLPP----QTVEVSTDGAKVVVSCGSAKFTILTLPVEDYPTLPAMPALTG 121 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 L S V + A ++ L G+ I + L V+TD +RLAV E+ Sbjct: 122 SVL-SDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VSTDRYRLAVRELTWT 178 Query: 190 AQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNIESLSMSVRLI 242 + + ++ +VP K + + + L+ + + ++LS E I + RL+ Sbjct: 179 PEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIGFEGGGRRTTTRLL 237 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 +GEFP Y+ ++P S + V +AV RVS+++ R ++LS +SD+L + Sbjct: 238 EGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVAE-RNTPLRLSFTSDRLVLEAGTG 296 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + +A+E ++ + I FN +LL+ ++ I S D + +S I GK Sbjct: 297 EEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIES-----DVAHLQFTTSTKPAIITGK 351 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 D D + Y++MP+RI Sbjct: 352 PADDGTASDYR----YLIMPVRI 370 >gi|291455694|ref|ZP_06595084.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213] gi|291382622|gb|EFE90140.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213] Length = 374 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 95/391 (24%), Positives = 183/391 (46%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + + P+ V L+A DG L+ A EI I A Sbjct: 1 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS V LL DI + L+ ++ ++ + G+ + I+ G S F LQ P++E+P Sbjct: 61 VDEVGSALVLGKLLADITKSLR--SEKTYLTTD--GSTLTITSGKSKFTLQLMPDAEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A++ EE R L G+ +D K+ +TD R Sbjct: 117 LPVVPPMLG-QVDAQTFVQAVNQASVAVSREENRPVLTGVRMQF--QDDKVIMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIESLS 236 LA A Q A + +I + R G +L+ + S D + L +++ L E+ Sbjct: 174 LARAAFTWTPQDANVDTITLVR---GSLLKDVARSLDEHQNIRLDFDADNPTLLGFENAG 230 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + + VN +L A+ RV++++ R +++ + + Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAE-RNAPIRMMFTGQE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ + D +A E++++ + + + FN YL E + I+ + V ++ + Sbjct: 290 LALSAGSADEAQANETLDIDMDGDEITVAFNPSYLKEGLSAIA-----EPFVRIKMTTPV 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V G+ + + D ++ Y+L+PMR Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372 >gi|227873172|ref|ZP_03991463.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841003|gb|EEJ51342.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 374 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 85/369 (23%), Positives = 180/369 (48%), Gaps = 17/369 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ +++D+L L + + K T+ + +L+ A +G + + + + I P Sbjct: 1 MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIESICPGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I + A L +I+++L + E I S F + EF Sbjct: 61 ILEPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDEFTS 120 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 PS +++E V E++ L+N++ +T F+ A+ E + G +F I + + A+ D Sbjct: 121 LPSVEKQEIV---EISQLSLRNMINQTIFSTASGENNKKMTGEYFEIIDNQFSITAL--D 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 GHR+A+ + ++ ++ S IVP++ + E+ +I+S + V++ S+ + + E Sbjct: 176 GHRIAIRKTEL-SESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKL 295 + +L++GE+ + + ++ + ++R+N + +DR I++ Q + L + L Sbjct: 235 VVTQLVEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSL 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + + D+G+ M V + I FN YL++ + NI +EV ++ F + S S Sbjct: 295 SLKIVS-DIGRMDAEMPVQQEGKDLLIGFNPTYLMDALQNIEEEEV---DLYFTI--SRS 348 Query: 356 SVFIRGKDK 364 VFIR +++ Sbjct: 349 PVFIRDQEE 357 >gi|294630339|ref|ZP_06708899.1| DNA polymerase III, beta subunit [Streptomyces sp. e14] gi|292833672|gb|EFF92021.1| DNA polymerase III, beta subunit [Streptomyces sp. e14] Length = 376 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 99/396 (25%), Positives = 178/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + V++ A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPNATG-TVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D SV ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGD-SVILALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ + K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPAVDAEADDAYK----YLIMPVRL 374 >gi|218233276|ref|YP_002367414.1| DNA polymerase III subunit beta [Bacillus cereus B4264] gi|218161233|gb|ACK61225.1| DNA polymerase III, beta subunit [Bacillus cereus B4264] Length = 376 Score = 100 bits (250), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEIILSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLAS 280 >gi|225575692|ref|ZP_03784302.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM 10507] gi|225037096|gb|EEG47342.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM 10507] Length = 369 Score = 100 bits (249), Expect = 3e-19, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 189/396 (47%), Gaps = 46/396 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++ + + A + + K T+P+ +L+ A ++ + E+ I + + Sbjct: 1 MKIICSKSNLSKGVNIALKAVPSKTTMPILECILIDATANQIKFVTNDMELGIETMVDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +I+RKL D ++ +++L T + N P Sbjct: 61 ISEKGMIALDAKIFSEIIRKLPDN-DVTIQTDDKLNTLITCEKAKFN----------IPG 109 Query: 121 TKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E++VY S L+ LK ++ +T F++A E + G F I + LK+ Sbjct: 110 KSGEDFVYLPMIERDASITLSQFTLKEMIRQTIFSIAVNENNKLMTGELFEIKDNYLKI- 168 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLN 231 V+ DGHR+A+ +++ A+ + IIVP K + EI +ILS + D V + +++ I Sbjct: 169 -VSLDGHRIAIRRMEL-AKDYEDRKIIVPGKTLNEISKILSGEVDDQVTIYFTKNHILFE 226 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKL 288 + + RLI+GE+ ++ + +L++N +DR +++ VR + + + Sbjct: 227 FDQTLVLSRLIEGEYFRIDQMLSSDYETKLKINKKEFLSCIDRATLL--VREGDKKPIII 284 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVV 347 +++ + +T+D+ MG E +++ + I FN K+L++ + V+DD E+ Sbjct: 285 NITDTSMVLTIDSA-MGSMDEEIDIVKEGKDILIGFNPKFLIDAL------RVIDDEEIT 337 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 L + + FI KD+K + Y+++P+ Sbjct: 338 IYLVNPKAPCFI----------KDDKGSYTYLILPV 363 >gi|229116204|ref|ZP_04245594.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3] gi|228667036|gb|EEL22488.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3] Length = 376 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 92/353 (26%), Positives = 166/353 (47%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V I + L + I K IP+ + + A+ + + AS + I IP S Sbjct: 1 MEFIVNHKHITQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I +NE + I + L Sbjct: 61 IEDEQIATILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QIITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P +EFP+ E ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 LPANEFPNVPLIEDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLV 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E +++ AK + IVP + E+L++++S V + LS+S + Sbjct: 175 CAATDSHRLAIRET-LISSDAK-ANCIVPSATISELLKLMNSHTEFVYIYLSDSHVIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + V + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ V E ++I F+ +++++ + I+ + V Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAITEEMV 345 >gi|126143269|gb|ABN80081.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 196 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 54/204 (26%), Positives = 120/204 (58%), Gaps = 8/204 (3%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ N L+ VATDG+RLA+ ++ + I S+I+PRK + E+ R+L+ Sbjct: 1 RYYLNGMLLEKNNTFLR--TVATDGYRLAITKIFLKKDIIPF-SVIIPRKGILELYRLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + + + + ++ I ++I L + +LI+G++P+Y++++ + + +NC L++++ Sbjct: 58 IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESILINIKKEPIILNCQLLKKSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I+S + +++ + ++L + DN + A + N+ Y+ + + N Y+++++ Sbjct: 118 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 177 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + I+S + + L+ SN+S+ Sbjct: 178 NTITS-----ENIFLYLNESNNSI 196 >gi|154508241|ref|ZP_02043883.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC 17982] gi|153797875|gb|EDN80295.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC 17982] Length = 378 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 103/395 (26%), Positives = 180/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 VD G + VS LL DI + L +S EL G +VN+ G S+F L P E+P Sbjct: 61 VDEAGEVLVSGRLLADISKSLPS-KPVSV----ELDGQKVNLVCGSSHFTLAVMPLDEYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + SS L V + A + ++ L G+ IN + L +ATD + Sbjct: 116 LLPSQPTGVG-AIDSSTLSQAVSQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRY 172 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLN 231 RLA+ E+D + + +V + + ++ + ++S + V+V LS S I Sbjct: 173 RLAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFT 231 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + L+DG++P + + P + + V+ L +AV R+S+++ R +V+L+ + Sbjct: 232 AQGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVAE-RKTSVRLAFT 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRL 350 +L + D +A E++ N + FN ++L ID + +V+D D V F Sbjct: 291 EGQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFL---IDGL---QVLDTDYVRFGF 344 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384 I G+ K + +V F Y+LMP+R Sbjct: 345 THPTKPAVITGQ----KKADEGEVTQFRYLLMPIR 375 >gi|258510497|ref|YP_003183931.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477223|gb|ACV57542.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 370 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 166/352 (47%), Gaps = 14/352 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ + L RI + + V VL++A G + + A ++ + + AS Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A L ++VR+L G ++ + L +++ G ++ L F EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGTVDVATIAPHHLSASIDV--GTTHAELHGFDPEEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + EL++ L VE +A A E R L G++ + E KL +ATDG Sbjct: 119 ELPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVY--VGYEGGKLIWMATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235 RLA + + + SI +PR+A+ E+ R+L + D+ ++V S S + +++ Sbjct: 177 LRLA----RVSQTVEREMSIRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNV 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL GE+P+ V+P RV L +A++RV+I++ V L + L Sbjct: 233 QLFGRLYQGEYPDTSRVMPREFAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVL 292 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +T + + G A E + V + + I N +Y+L+ + S + + +V Sbjct: 293 ELTSRSAERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQMQV 344 >gi|313892141|ref|ZP_07825734.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII 345-E] gi|313119279|gb|EFR42478.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII 345-E] Length = 369 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 88/352 (25%), Positives = 166/352 (47%), Gaps = 22/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ D++ L R + K T + + A D +E +A+ + I A Sbjct: 1 MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP---ESE 117 ++ G ++A L +R + K+NE T V G Y+ FP + Sbjct: 61 IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQ---YIAKFPTRLHDD 115 Query: 118 FPSTKEEEYVYSFELASSVLK--NLVERT---HFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP E + + ++LK +LVE T ++ A ++ + GI F I +D K Sbjct: 116 FP-----EILNMQNTSKAILKCKDLVEMTNLVQYSAANDKQKPLFTGILFEI--KDKKFI 168 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLN 231 AT+ HRLAV E+++ IIVP + +++++L +D V+++ +++ + Sbjct: 169 MAATNTHRLAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFT 228 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + LI+GE+P+Y+ VIP D + ++ AV VS +S V Q + Sbjct: 229 FNNTYFITSLINGEYPDYKRVIPSHFDAKAELDLNEFIDAVRFVSPISRDVNYQTINFFF 288 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 S+DKL + ++PD+GK+ ++ + ++I FN Y+ +I+ + ++++ Sbjct: 289 SNDKLEIYEEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKII 340 >gi|289166911|ref|YP_003445178.1| DNA polymerase III, beta subunit [Streptococcus mitis B6] gi|288906476|emb|CBJ21306.1| DNA polymerase III, beta subunit [Streptococcus mitis B6] Length = 378 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 172/354 (48%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 + ++ ++ L+ L R I KN IP+ + + N+G+ I ++G +I I I Sbjct: 2 IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGVTLIGSNG-QISIENFISQ 60 Query: 60 S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111 + GSI + A ++V L D ++ FKE E ++ ++ G S L+ Sbjct: 61 KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 ++P +E L + +LK ++ T FA + +E R L G+ F +++ +L Sbjct: 117 GKDSEQYPRIQEISVSTPLVLETKLLKKIINETAFAASIQESRPILTGVHFVLSQHK-EL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ + +++P +++ E + + +V++ + ++I Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290 E++S RL++G +P+ +IP + + + NLRQ+++R ++SS VKL + Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVINLRQSMERARLLSSATQNGTVKLEI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + V +P++GK E ++ E + I FN YL++ + ++S++V Sbjct: 295 KGGIVSAHVHSPEVGKVNEEIDTDQVIGE-DLTISFNPTYLIDSLKALNSEKVT 347 >gi|330959579|gb|EGH59839.1| putative DNA polymerase subunit [Pseudomonas syringae pv. maculicola str. ES4326] Length = 369 Score = 100 bits (249), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 98/394 (24%), Positives = 180/394 (45%), Gaps = 34/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ SD+ L R+ +RK T V H L++ + L + A + +++ +IPA Sbjct: 1 MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIKVDATGLVLSAHNGQKQMSLSIPAD 59 Query: 61 VDVCG----SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPE 115 + ++ V A ++ L A +S F E +L IS S F L + P Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVISALAKEAMVSIQFAEPKL----VISAARSRFTLATIPA 115 Query: 116 SEFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP + ++ +A L V + F A ++R LNGI F + L L A Sbjct: 116 DHFPVMEFTADQSKGELNIAGITLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLLTLAA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 TDG RL V +V + + M I+P + ++ + + + + V+V+ S S E Sbjct: 176 --TDGLRLGVIDVPVSGE--PMQDFILPSSCIEDVCQFVGTGN--VQVATSGSMARFTRE 229 Query: 234 SLSMSVRLIDGEFPNYQN-VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + +L++G+FP+Y+ VI R+ + A+ RV +MS + V+L++S+ Sbjct: 230 GGVLHTKLVEGKFPDYRKLVIAAERGDVARIVRDDFAGAMARVGLMSEGAVSLVRLAVSA 289 Query: 293 DKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + +V A + + Y+ ++I FN EI+ ++ + E+ +++F Sbjct: 290 DSISIHSVGGHAEDVADDVLACDYHAESLEIGFNGSLAGEIVRSLGATEI---DLIF--S 344 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R +D S + +VLMP+R+ Sbjct: 345 GPASGTLLRARDLPSHS---------FVLMPVRL 369 >gi|218296135|ref|ZP_03496904.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] gi|218243512|gb|EED10041.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] Length = 370 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 78/349 (22%), Positives = 158/349 (45%), Gaps = 31/349 (8%) Query: 28 PVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87 P+ ++ L+ + L I+ + E+++ +PA + G + V A +R +++ Sbjct: 27 PLWTYLYLEGREKELVIRTANEEMDLEVRLPAMGEEGGPVLVPAS---PFIRAVENAPG- 82 Query: 88 SFFKENELGTEVNISHGDSNFYLQSFP---------ESEFPSTKEEEYVYSFELASSVLK 138 E+E EV I + ++++P FP+ E + + + L Sbjct: 83 ---DEDEEDKEVIILIQEGQVEVRAWPWRATINAAGPEGFPAWPESDTALRTRMDAQDLL 139 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 + + +A++ E R G+ ++ + AVA+DG+RLA+ +++ K Sbjct: 140 RALSQVRYAVSRESWRAIFRGVQLEFSDRGFR--AVASDGYRLALFDLERPQPFTK--KA 195 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----LSMSVRLIDGEFPNYQNVIP 254 +VP ++V E++R+L + V +++ S + + + ++VRL+ GEFP+Y+ VIP Sbjct: 196 VVPARSVDELMRVLRGAEGEVDLAVGTSTMTMAAWQEKGVVRIAVRLMPGEFPDYERVIP 255 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314 + + R+A+ RVSI+++ V LSL + + + D GK E + V Sbjct: 256 KEFPLTVTLEAEPFREALKRVSILANKENHRVDLSLEGKRALLFAEG-DYGKGQEEIPVS 314 Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 PM + ++ ++ L+ + V+ EVV R + I D Sbjct: 315 LEGAPMSLAYDARHFLDAVSR------VEGEVVMRFSGQFTPTLIEPAD 357 >gi|318058970|ref|ZP_07977693.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actG] gi|318079378|ref|ZP_07986710.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actF] Length = 376 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 94/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 + G++ VS LL DI R L + + E+ G ++ G S F L + P E Sbjct: 61 TEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVTCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + ++ A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPSATG-TVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + A++ ++ +VP K + + + L++ D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPEDAEISAVALVPAKTLLDTAKSLTNGD-NVTIALSGSGSGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ + K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374 >gi|229173346|ref|ZP_04300890.1| DNA polymerase III, beta subunit [Bacillus cereus MM3] gi|228610040|gb|EEK67318.1| DNA polymerase III, beta subunit [Bacillus cereus MM3] Length = 376 Score = 100 bits (248), Expect = 4e-19, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 28/357 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + + + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVNKAISTKAIIPILSGIKITVDQSGITLIASDSNIFIEKLIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G+I V A +I++K+ I E + I + L Sbjct: 61 TEGDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQI----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P EFP+ + + + L + ++T FA+A E R L G+ HI E KL Sbjct: 117 LPAYEFPNVPLIDDHAKIQAETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELEHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I ++ S IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETIISTEVKA--SCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS------VRIQAV 286 + ++ RLI+G++PN ++IP + V+ + Q VDR S++SS V ++ + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRKRILQGVDRSSLLSSEWANNNVNLEII 292 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 S + ++ + +GK E+ + E ++I F+ +++++ + I + V Sbjct: 293 DES----TIKISSNASQIGKISETQQIDEIQGEKQLNISFDGRFMMDALKAIKEETV 345 >gi|295837756|ref|ZP_06824689.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74] gi|295826661|gb|EFG64969.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74] Length = 376 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 94/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 + G++ VS LL DI R L + + E+ G ++ G S F L + P E Sbjct: 61 TEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVTCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + ++ A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPSATG-TVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + +++ ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPEDSEISAVALVPAKTLLDTAKSLTSGD-NVTIALSGSGSGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ + K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374 >gi|125622884|ref|YP_001031367.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris MG1363] gi|3913511|sp|O54376|DPO3B_LACLM RecName: Full=DNA polymerase III subunit beta gi|2909714|gb|AAC12964.1| polymerase III subunit DnaN [Lactococcus lactis subsp. cremoris MG1363] gi|124491692|emb|CAL96610.1| beta subunit of DNA polymerase III [Lactococcus lactis subsp. cremoris MG1363] gi|300069622|gb|ADJ59022.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris NZ9000] Length = 380 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ ++ L + I K TIP + ++ + + + S +I I +PA Sbjct: 2 IKFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPAD 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GS+ + A ++V +L + + F ++ + +V ++ G S L+ Sbjct: 62 NKDASMLISGTGSVLLEAAFFENVVSQLPE-VTLEFIEKEQ--KQVLLTSGKSEITLKGL 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC 172 +P +E S ++ VLK + T FA++T+E R G+ ++ +LK Sbjct: 119 DSEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ + + K +I+P K++ + ++ + +++ +S S++ Sbjct: 177 AVATDSHRMSQRLLPLEDTDLKF-DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQN 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRIQA-VKLS 289 E++S RLI+G +P+ +IP D L + + LR +DR +++ + VKL+ Sbjct: 236 ETISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 +S D + T ++P++G E + E + I FN +YL++ + I + EV Sbjct: 296 VSGDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEV 348 >gi|228921359|ref|ZP_04084683.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838304|gb|EEM83621.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 376 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQSLSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIKKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++ V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNGNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280 >gi|325478849|gb|EGC81959.1| DNA polymerase III, beta subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 370 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 88/339 (25%), Positives = 171/339 (50%), Gaps = 23/339 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + ++++ + A + + + I + + + + L + A EI I ++ A Sbjct: 1 MKFRINQQELIDAINIASKAVSKSTNIQIHELIYFECKENSLYLMAFDGEISIKTSVDAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFP----- 114 VD G + V A L+ +IVRKL D IS N+ G +++I SNF L +F Sbjct: 61 VDEEGEMAVKASLISNIVRKLPNDLVTIS----NKEG-KISIRCSSSNFNLIAFDYFEKN 115 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E P T E+A+ VLK + +T FA +E + L GI F + E L + V Sbjct: 116 DIEIPETT------PIEIANDVLKRSISQTEFATTLDETKLALTGILFELKEGSLNM--V 167 Query: 175 ATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 A DG+R+A+ +V + S I+P++++ E RI+ ++D+ K+ +++ + E Sbjct: 168 ALDGYRVALKKVKLDYPTDYEDSEYIIPKRSLIEWSRII-TEDTKTKLYKNDNDLIFVSE 226 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + +M ++ID F +Y+N+I ++ + ++ L ++DR +++ R +K+ ++ Sbjct: 227 NTTMQCKVIDKNFIDYRNIINDISETTIILDKRELINSLDRAQVLADPGRANLIKIEVAD 286 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 + + N ++G E ++V +DI FN +Y+ E Sbjct: 287 SSMVIK-SNSEIGDVKEVIDVEQKGENLDIAFNARYMQE 324 >gi|313904726|ref|ZP_07838100.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6] gi|313470519|gb|EFR65847.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6] Length = 369 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 189/393 (48%), Gaps = 36/393 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ D+ +G + + K T+P+ +L+ A+ ++ A+ E+ I +P Sbjct: 1 MKLIFDQQDLANSVGIVMKAVPSKTTMPILQCILIDASFSQIKFTANDMELGIETIVPGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I + A + DIVRKL + EN++ T I+ + F + +F Sbjct: 61 IAEKGKIALDAKIFSDIVRKLPNSRVTIETNENDVTT---ITCEKAKFDIPGKSGDDFAD 117 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P +++ +L+ L+ ++ +T F++A E + G F ++ LK+ VA D Sbjct: 118 LPKIDRNDFISISQLS---LREVIRQTIFSIAVNENNKLMTGELFEVSNNKLKV--VALD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 GHR+A+ ++I ++ + ++VP K + EI +ILS + D V + S++ + + Sbjct: 173 GHRIAIRNLEISSECSP-KRVVVPGKTLNEISKILSGEADDLVTIYFSDNYLLFEFDDTV 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSD 293 + RLIDGE+ ++ + ++ VN +DR +++ VR V + ++ + Sbjct: 232 VLSRLIDGEYFKIDQMLSSDYETKIEVNRQEFISCIDRATLL--VRESDKMPVIIDITDE 289 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDS 352 ++ + +D+ +G E +++ + I FN K+LL+ + V+DDE V + Sbjct: 290 QMELQIDSA-IGSMDEEIDIEKTGKDITIGFNPKFLLDAL------RVIDDERVSIFFVN 342 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + FIR D + N Y+++P+ I Sbjct: 343 AKAPCFIR----------DEEGNYIYLILPVNI 365 >gi|325846374|ref|ZP_08169343.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481558|gb|EGC84598.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 370 Score = 100 bits (248), Expect = 5e-19, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 163/333 (48%), Gaps = 11/333 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ D+ + A + + RK I + + +A + L + +S EI I + + Sbjct: 1 MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVSCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + ++A+++ +IVRKL D K + +++ I S F + +F E Sbjct: 61 VIEEGEMAINANIISNIVRKLPD----ELIKIEVVDSKIKIKCNGSKFNILAFDYYEKKD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K + Y E+ + LK + +T FA + +E + L GI F + D L VA DG+R Sbjct: 117 LKVPDVDY-LEIQNDKLKRSISQTEFATSLDETKLALTGILFELM--DGYLNFVALDGYR 173 Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + + S +I+PRK++ E RI+ + K+ + I +M Sbjct: 174 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 ++ID + +Y N+I + L V+ L +++R ++++ R +K+++ DK C+ Sbjct: 233 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDK-CLI 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 N ++G E + + + I FN +YL+E Sbjct: 292 ESNSEIGDLKEIIQIQKEGEDVKIAFNARYLIE 324 >gi|329121619|ref|ZP_08250240.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM 19965] gi|327468774|gb|EGF14251.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM 19965] Length = 369 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 22/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ D++ L R + K T + + A D +E +A+ + I A Sbjct: 1 MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP---ESE 117 ++ G ++A L +R + K+NE T V G Y+ FP + Sbjct: 61 IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQ---YIAKFPTRLHDD 115 Query: 118 FPSTKEEEYVYSFELASSVLK--NLVERT---HFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP E + + ++LK +LVE T +A A ++ + GI F I +D K Sbjct: 116 FP-----EILNMQNTSKAILKCKDLVEMTNLVQYAAANDKQKPLFTGILFEI--KDKKFI 168 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLN 231 AT+ HRLAV E+++ IIVP + +++++L +D V+++ +++ + Sbjct: 169 MAATNTHRLAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFT 228 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + LI+GE+P+Y+ VIP D + + AV VS +S V Q + Sbjct: 229 FNNTYFITSLINGEYPDYKRVIPSHFDAKAELYLNEFIDAVRFVSPISRDVNYQTINFFF 288 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 S+DKL + ++PD+GK+ ++ + ++I FN Y+ +I+ + ++++ Sbjct: 289 SNDKLEIYEEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKII 340 >gi|21222286|ref|NP_628065.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)] gi|256786614|ref|ZP_05525045.1| DNA polymerase III subunit beta [Streptomyces lividans TK24] gi|289770507|ref|ZP_06529885.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] gi|118804|sp|P27903|DPO3B_STRCO RecName: Full=DNA polymerase III subunit beta gi|153241|gb|AAA26735.1| DnaN [Streptomyces coelicolor A3(2)] gi|8247660|emb|CAB92998.1| DNA polymerase III, beta chain [Streptomyces coelicolor A3(2)] gi|289700706|gb|EFD68135.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] Length = 376 Score = 100 bits (248), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 ++ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 IEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + V++ A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPEATG-TVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGD-QVILALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374 >gi|116510845|ref|YP_808061.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris SK11] gi|116106499|gb|ABJ71639.1| DNA polymerase III, beta subunit [Lactococcus lactis subsp. cremoris SK11] Length = 380 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 18/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K ++ ++ L + I K TIP + ++ + + + S +I I +PA Sbjct: 2 IKFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPAD 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GS+ + A ++V +L + + F ++ + +V ++ G S L+ Sbjct: 62 NKDASMLISGTGSVLLEAAFFENVVSQLPE-VTLDFIEKEQ--KQVLLTSGKSEITLKGL 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC 172 +P +E S ++ VLK + T FA++T+E R G+ ++ +LK Sbjct: 119 DSEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELK-- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HR++ + + K +I+P K++ + ++ + +++ +S S++ Sbjct: 177 AVATDSHRMSQRLLPLEDTDLKF-DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQN 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRIQA-VKLS 289 E++S RLI+G +P+ +IP D L + + LR +DR +++ + VKL+ Sbjct: 236 ETISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTIMTTNGTVKLT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 +S D + T ++P++G E + E + I FN +YL++ + I + EV Sbjct: 296 VSGDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEV 348 >gi|329938637|ref|ZP_08288033.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus M045] gi|329302128|gb|EGG46020.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus M045] Length = 376 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 173/395 (43%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS + + V + V++ A ++ L G+ I + + L +TD Sbjct: 114 YPSLPQMPNATG-TVPGEVFASAVQQVATAAGRDDTLPVLTGVRIEIEGDSVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKV----SLSESRIHLNI 232 +R AV E + + ++ +VP K + + + L+S D + E I Sbjct: 171 RYRFAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALAGSGAGEGLIGFEG 230 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 231 AGRRTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFEQ 289 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 290 GVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSFT 343 Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 344 TSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374 >gi|163838771|ref|YP_001623176.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC 33209] gi|162952247|gb|ABY21762.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC 33209] Length = 408 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 96/388 (24%), Positives = 182/388 (46%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K VER + + + A R + + +PV +LL+A+ G L + + EI IPA Sbjct: 35 VKFRVERDVLNDAVSWAARALSPRPPVPVLSGLLLKASAGTLSLSSFDYEISARLEIPAD 94 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I VS LL DI R L A + + G++V ++ +S F L + PE+++P Sbjct: 95 IAEEGTILVSGRLLADICRSLPS-APVEVSTD---GSKVILTCRNSRFNLATMPEADYPE 150 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S +A V + A + ++ L G+ I E+DL + +ATD +R Sbjct: 151 LPALPKI-SGTVAGDAFAKAVTQVTVAASKDDTLPILAGVKVEI-EDDL-ITLLATDRYR 207 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E++ + + S +V K + E+ + L + +SLSE + ES Sbjct: 208 LAMRELNWKPAVPGISTSALVKAKTLSEVAKTLGGA-GEINISLSEDSELIGFESGGRRT 266 Query: 240 R--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 L+DG++P +++ P + V + L +AV RV++++ Q V+L+ + ++ + Sbjct: 267 TSLLVDGDYPKIRSLFPENTPIHATVETSALVEAVRRVALVAERNTQ-VRLAFTDGQVGL 325 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E++ + + FN YL E ++ S V F S+ Sbjct: 326 DAGTGEDAQASEALEAALTGEEITVAFNPHYLSEGLNAFES-----KYVRFSFTSAPKPA 380 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D +++D+ Y++MP+R+ Sbjct: 381 MMTAQDSIDGDDQDHY---RYLVMPVRL 405 >gi|297625206|ref|YP_003686969.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920971|emb|CBL55508.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 386 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 104/406 (25%), Positives = 185/406 (45%), Gaps = 43/406 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITVER + E + R + + ++P+ +L++A L + + E I A Sbjct: 1 MKITVERDVMAEAVAWVARSLPNRPSVPILAGLLMRATGSQLVLSSFDYETSARITIDAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G VS LL +I R L + + + F N V + G + F LQ P ++P Sbjct: 61 VDEEGEALVSGRLLSEIARSLPN--RPARFTANS--NHVELVCGSARFTLQMLPVEDYPQ 116 Query: 121 ----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E V S E SV + +V A +E+ G+ IN++ L L +AT Sbjct: 117 LPEMPAESGTVPSDEFTRSVAQVVV-----AAGRDELLPVFTGVRIEINDDRLSL--LAT 169 Query: 177 DGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHL 230 D +R+A+ E+ + S +VP + + E R + + +V ++LS E I L Sbjct: 170 DRYRMALKELTWNPATTQAESAALVPARVLSESARSMGGGE-AVALALSNGIEGEGLIGL 228 Query: 231 NIESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + E ++ RL+DGEFP ++++ + +RV + ++V RVS+++ R +V Sbjct: 229 SGEGAGGRRELTTRLLDGEFPKVRHLMDIKPNVTVRVKTEEVLESVKRVSLVAE-RNTSV 287 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM-----NVYYNECPMD-ICFNYKYLLEIIDNISSDE 340 ++ + D++ + D +A E++ NV E + + FN +YL + + + + Sbjct: 288 RMVIEDDRIALDAATGDQAQATEAIEAQVNNVAGGEMAVSAVGFNPRYLTDALSALDT-- 345 Query: 341 VVDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + ++G D D + D K +V+M MR+ Sbjct: 346 ---PYVQFSFTAPGKPCLVQGLPDVDGEPEADYK----HVIMLMRL 384 >gi|224437091|ref|ZP_03658072.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818] gi|313143562|ref|ZP_07805755.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818] gi|313128593|gb|EFR46210.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 87/343 (25%), Positives = 161/343 (46%), Gaps = 17/343 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ +S + L + +++++ ++ H+ +A D L +KA+ EI + I Sbjct: 1 MKISLPKSLLETALTNCQNFLDKRDRSQITSHICFEAKDDKLILKATDYEIWLESHINIQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ T + + DI+++L+DG KE+ L +IS G S L F EFP Sbjct: 61 PQAQGNATANGKQILDIIKRLKDGDINLEAKEDTL----HISQGRSRTKLPMFNADEFPR 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + ++R + A+ T +Y LNG I E VATD R Sbjct: 117 FPEYDNNAQINIEAQKFLTSLKRINPAVDTNNPKYELNGSLLDIKEYGFNF--VATDTRR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV E +Q S+I+P+KA+ EI R+ +++ + + + L + + Sbjct: 175 LAVIEYK--SQSINALSLIIPKKAISEISRLFI---DHLEIYHNPTHLILKNNEYTFYTK 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLR-QAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G+FP+Y+ +IP KE + + + VD + + S+ +K++LS +++ Sbjct: 230 LINGKFPDYEKIIP----KEFKYKILLPKDKFVDALQFVKSLA-NNIKITLSPNEVLFES 284 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 N + G+A + + + N KY+L+ + I +E Sbjct: 285 LNEESGEASTQIEAQTGIESLTLGINSKYILDFLSQIDGNEFT 327 >gi|146317664|ref|YP_001197376.1| DNA polymerase III subunit beta [Streptococcus suis 05ZYH33] gi|223933959|ref|ZP_03625918.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591] gi|253750925|ref|YP_003024066.1| DNA polymerase III, beta chain [Streptococcus suis SC84] gi|253752824|ref|YP_003025964.1| DNA polymerase III, beta chain [Streptococcus suis P1/7] gi|253754649|ref|YP_003027789.1| DNA polymerase III, beta chain [Streptococcus suis BM407] gi|302023111|ref|ZP_07248322.1| DNA polymerase III subunit beta [Streptococcus suis 05HAS68] gi|330831851|ref|YP_004400676.1| DNA polymerase III subunit beta [Streptococcus suis ST3] gi|145688470|gb|ABP88976.1| DNA polymerase sliding clamp subunit [Streptococcus suis 05ZYH33] gi|223897378|gb|EEF63780.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591] gi|251815214|emb|CAZ50778.1| DNA polymerase III, beta chain [Streptococcus suis SC84] gi|251817113|emb|CAZ54834.1| DNA polymerase III, beta chain [Streptococcus suis BM407] gi|251819069|emb|CAR44083.1| DNA polymerase III, beta chain [Streptococcus suis P1/7] gi|319757174|gb|ADV69116.1| DNA polymerase III subunit beta [Streptococcus suis JS14] gi|329306074|gb|AEB80490.1| DNA polymerase III subunit beta [Streptococcus suis ST3] Length = 378 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 2 IQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A ++V + D + F E E ++ ++ G S L+ Sbjct: 62 DENAGLLISSPGSILLEAGFFINVVSSMPD--LVLDFNEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + VLK + T FA +T+E R L G+ F + E + L Sbjct: 119 EAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTE-NKNLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ ++ ++++P +++ E + + +V+V S ++I E Sbjct: 178 VATDSHRMSQRKL-VLDTSGDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 +S RL++G +P+ +IP + NLR +++R ++S + + VKL +++ Sbjct: 237 HISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIAN 296 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++G+ E ++ V + + I FN YL+E + +S++V Sbjct: 297 NVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTSEQV 346 >gi|152989755|ref|YP_001355477.1| DNA polymerase III subunit beta [Nitratiruptor sp. SB155-2] gi|151421616|dbj|BAF69120.1| DNA polymerase III, beta subunit [Nitratiruptor sp. SB155-2] Length = 354 Score = 99.8 bits (247), Expect = 6e-19, Method: Compositional matrix adjust. Identities = 94/365 (25%), Positives = 183/365 (50%), Gaps = 32/365 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + +S ++L +E+K+ ++ HV ++AN+ L+ +KA+ E TG + Sbjct: 1 MKIEIRKSLFEQVLTQIQPFLEKKDISQITSHVYIEANEKLI-LKATDYE---TGLKTSL 56 Query: 61 VDV-C---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D C G T + L DI+R L++ KEN L +IS G S F L F Sbjct: 57 EDFNCIKPGLATANGKKLLDIIRILKEDLITLETKENTL----HISQGHSRFKLPMFDAE 112 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP + + + ++ +++ A+ T ++ LNG I E+ K+ VAT Sbjct: 113 SFPKFPDIDNLPKIDIKGGEFIASLKKIAPAIDTNNPKFELNGALIDIKED--KINFVAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D RLA+ V + + K ++I+P+KA+ EI ++ + + E+ + + E+ Sbjct: 171 DTRRLAL--VTLEQSMEKAFNLIIPKKAINEIQKLFLD---DISMFYDETYLIIKNENYL 225 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL- 295 +LI+G+FP+Y+ +IP + + E+ + ++ +A+ +++I+S+ +KL+ D++ Sbjct: 226 FFTKLINGKFPDYERIIPKTLNYEMTLPKESMIEAIKQITIISN----ELKLTFLKDRII 281 Query: 296 --CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV----DDEVVFR 349 ++ +N + IE + + M + N KY+L+ + +I +D+ V D ++ F Sbjct: 282 FRSLSEENIEAQTEIEVSTPFEEKFVMAV--NSKYILDFLAHIDTDQFVMGINDSDLPFE 339 Query: 350 LDSSN 354 L +N Sbjct: 340 LKENN 344 >gi|210612900|ref|ZP_03289510.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787] gi|210151377|gb|EEA82385.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787] Length = 369 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 88/351 (25%), Positives = 174/351 (49%), Gaps = 17/351 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++D+++ + + + K++ + +LL+A + + + E+ I + + Sbjct: 1 MKIICKKADLVKAVQTVSKAVPMKSSTTILECILLRAEKEKITLTGNNLELGIETMMSGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 ++ GSI + A + +IVRKL +G + E + T V N ++S E + P Sbjct: 61 IEEEGSIAIQAKVFGEIVRKLPEGDVVLETGEKDQAT-VRCKKTKYNLAVKSAEEYTCIP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V E LK + +T F++A + + G + IN ++LK+ VA DGH Sbjct: 120 DVERKNRVMISEFD---LKEAIRQTIFSVADTTTKKAMTGELWEINGKELKI--VALDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 R+++ +V + + +IVP K + E+++I+ + V V +E+ I IE+ Sbjct: 175 RISLRKVKLKKEYEPR-KVIVPGKNLAEMIKIIGGDPEKEVAVYFTENHIQFEIENTRAI 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDKLCM 297 RLI+GE+ + ++ +++V L++ +DR ++ + + L++ + L + Sbjct: 234 SRLIEGEYLKVEQLLSKDYGTKIKVQKKELQECIDRAGLLLKDDAKKPIILNIEENILSL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 V + +MG ESM + + I FN K+LLE++ V+DDE VF Sbjct: 294 EVAS-NMGSMNESMFIVKEGEKLRIGFNPKFLLEML------RVIDDEEVF 337 >gi|170016360|ref|YP_001727279.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20] gi|169803217|gb|ACA81835.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20] Length = 377 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 86/342 (25%), Positives = 163/342 (47%), Gaps = 23/342 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++ L R I + TIP+ ++ + ++ L + S +I I I S Sbjct: 1 MQFSINRQAFIKSLNDVARAISSRTTIPILTNIKIVLSEDELILTGSNSDISIETRIEQS 60 Query: 61 VDVC-------GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 G IT+ A +IV+ L D ++ G NI+ G S F + Sbjct: 61 DTTAQLVIKEKGGITLPATFFANIVKNLPADDLMLAVD-----GLRANITSGASAFTING 115 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P E + V S ++++ L +++ +T + +T+E R L GI +N D+K Sbjct: 116 QDVRNYPQLPEMDDVQSLSVSAAQLIDIISQTKISASTQESRPILTGIHLALNGNDVK-- 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AV TD HRL+ V + A + + +I+P K+ E+ +L +D V + LS ++ + Sbjct: 174 AVTTDSHRLSQRIVTLTGTEAHVSADVIIPAKSFNELQSLLEGQD-RVDIKLSANQAVFD 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + + RL++G +P +IP + EL ++ L A++R S++S R V+L+L Sbjct: 233 LGHTTFYSRLLEGNYPETDRLIPTESTTELTMDAGALLGAINRASLLSHESRNNVVQLTL 292 Query: 291 SSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYL 329 + +T + ++G+ E + +V + ++I FN Y+ Sbjct: 293 KAGVATLTGTSQEVGQVQEELVTKSVAGED--LEISFNPDYV 332 >gi|163814986|ref|ZP_02206373.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759] gi|158449669|gb|EDP26664.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759] Length = 368 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 84/389 (21%), Positives = 195/389 (50%), Gaps = 28/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ ++++L+ + + + K T P+ +L++A+ G++++ A+ EI I + + Sbjct: 1 MKISIRKANLLQGITTVSKAVSNKTTHPILSCILVEASGGIIKLTANDMEIGIESYVDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 V G + + A L D +RKL D ++IS + E T + + N +S + S P Sbjct: 61 VIEDGKVALEAKLFSDFIRKLPD-SEISIESDKENKTLIKCERLEFNLPGKSGNDFSNLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +++Y+ + A L++++ +T F+++ E + G F ++ +L V+ DGH Sbjct: 120 VVSKDKYITISQFA---LRDVINQTIFSISDNENNKLMTGELFEVSNN--RLSVVSLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 R+++ +D+ + + ++VP K++ +I +I++ D V + +E+ I ++ + Sbjct: 175 RISIRYIDLKGDNSDI-KVVVPGKSLSDISKIMNGGVDDPVNIYFNENNILFEFDNTKVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ +++ ++++N ++DR +++ + ++LS+ L + Sbjct: 234 SRLIEGEYFRISHMLSVDYQIKMKINKREFLDSLDRATLLIKESDKKPIRLSIGDRNLGL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356 + + +G + +++ + I FN K +++ + V+DDE V +++ S Sbjct: 294 KISSL-IGSLNDEIDIEKEGNNLVIGFNPKLIIDAL------RVIDDENVTIYFNNTKSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I KD+ + Y+++PM I Sbjct: 347 CVI----------KDDAGSYIYLILPMGI 365 >gi|229161568|ref|ZP_04289548.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] gi|228621813|gb|EEK78659.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] Length = 376 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKALIPILSGIKIIADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I +NE + I + L Sbjct: 61 IDDEQITTILKTGTIVVPAKYFIEIIKKMP--GDIIIKSKNE--QTITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F E+P+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FSADEYPNVPSIDNHVEIQMETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP V E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATVNELLKLINSNLEIVFIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVIHMDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ N +GK E+ + E ++I F+ +++++ + I + V+ Sbjct: 293 NESTIKVSSNASQIGKISETQQIDTIRGEKQLNISFDGRFMVDALRAIKEETVI 346 >gi|68535064|ref|YP_249769.1| DNA polymerase III subunit beta [Corynebacterium jeikeium K411] gi|260579562|ref|ZP_05847433.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|68262663|emb|CAI36151.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium K411] gi|258602333|gb|EEW15639.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 394 Score = 99.8 bits (247), Expect = 7e-19, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 182/400 (45%), Gaps = 36/400 (9%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D LG R + K T P+ V++ A+D LE+ E+ I A V+ Sbjct: 10 VPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFDREVSTRVRINAEVNEP 69 Query: 65 GSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G I V+ L DIV L + I F GT V + G S F L + ++P E Sbjct: 70 GKILVAGKLASDIVGSLPNKPINIEFD-----GTTVILKTGKSKFELPAMTIEDYPVLPE 124 Query: 124 EEYVYSFELASSVLKNL----VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E+ ++ NL + + A ++ L G+ I+ E++ + VATD Sbjct: 125 LP-----EVTGTIDPNLFAESISQVAVAAGRDDTLPMLTGVHVEIDGENVIM--VATDRF 177 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHL 230 RLAV AQ +++P + + + R + ++ +++++ ++ + + Sbjct: 178 RLAVRSFQWNPAQADAQAKLLIPARTLADTARSMDPNNTDPIEIAVGSGEDIGADGLLGI 237 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + ES + RL+D EFP ++ ++P ++ V L++A+ RVSI++ R +++ Sbjct: 238 STESRHTTTRLLDAEFPKFRPLLPKTHTALASVEIAPLQEAIKRVSIVAE-RNSQIRMDF 296 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + ++ D+G A E+++ + P+ I FN YL E + I + VV F + Sbjct: 297 KDNTVTLSAGGSDVGSATETLDCAFAGEPLVIAFNPSYLKEGLAAIHTPRVV---FGFTM 353 Query: 351 DSSNSSVFIRG----KDKDSKNNKDNKVNAF-YVLMPMRI 385 +S ++ + + D++ N F Y+LMP+R+ Sbjct: 354 -ASRPAILLPDPGELPEADAEGNFATPETDFTYLLMPVRL 392 >gi|30020817|ref|NP_832448.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579] gi|229128034|ref|ZP_04257016.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4] gi|229145271|ref|ZP_04273660.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24] gi|29896369|gb|AAP09649.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579] gi|228638110|gb|EEK94551.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24] gi|228655309|gb|EEL11165.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4] Length = 376 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKFLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + SES I Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATINELLKLMNSNSEFVYIYFSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|160946605|ref|ZP_02093808.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270] gi|158446989|gb|EDP23984.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270] Length = 368 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 90/342 (26%), Positives = 163/342 (47%), Gaps = 11/342 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I + ++++L L+ + R I KN + +L D L +K++ E+ I + Sbjct: 1 MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTECK 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G + ++A ++ +IVRKL D I +E N + S+PE FP Sbjct: 61 VEKEGEVLLNASMISNIVRKLPNDEVYIKVDREKVFIQSENAKFNIIAMDIYSYPE--FP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + ++LK ++T FA A ++ R LNG+ I +++ VA DGH Sbjct: 119 TFENK---VDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKNVDF--VALDGH 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A I I K +I+P +A+ EI +I+ + S V VSL + E+ S Sbjct: 174 RIAKRSFKIEEDIEK--KVIIPPRALNEISKIVP-EGSVVGVSLVKGSAIFTFENTIFST 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 R+IDGE+ NY+ + + ++ V +L A++R +I+ + D + Sbjct: 231 RVIDGEYLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVE 290 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++G + +++ + I FN KY+LE + I D V Sbjct: 291 GSSEIGDLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIEQDFV 332 >gi|323357955|ref|YP_004224351.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum StLB037] gi|323274326|dbj|BAJ74471.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum StLB037] Length = 383 Score = 99.4 bits (246), Expect = 8e-19, Method: Compositional matrix adjust. Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 21/349 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R E + +++ ++N P+ VL++AN+ L + A E I A+ Sbjct: 1 MKFHVNRDVFSEAVSFVVKLLPQRNPQPILAGVLIEANEQGLTLAAFDYEASARTTIEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+I V LL DI +L + A I + + G + ++ G + F L S P E+P+ Sbjct: 61 VDEPGTILVHGRLLSDIASRLPN-APIQIAVDEDGG--ILLTCGSARFTLASMPVQEYPA 117 Query: 121 ----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 T E V + E A+++ + FA + +++ L G+ ++ L L VAT Sbjct: 118 IPEVTGESGLVPADEFATAIAQ-----VAFAASRDDVTPVLTGVQLEVSGTRLSL--VAT 170 Query: 177 DGHRLAVAEVDIVAQIA---KMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR--IHL 230 D +R+A+ E+ A + S +VP + + E+ + + D S+ S S R I Sbjct: 171 DRYRVALREIPWDGGQAASDETTSALVPARTLQEVGKTFAHGGDISIAFSGSGDREIIAF 230 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + +++ LI G FP + + P + VN L +AV RV+++ R ++ + Sbjct: 231 TAANKTVTSLLIKGNFPPVRRLFPEQTEHHSVVNTAELAEAVRRVALVLD-RSAPLRFTF 289 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 +D + M + +A E+++ + + N +YLLE + + S+ Sbjct: 290 GADGVSMDASGTEQARATETVDATLVGDEVTLGLNPQYLLESLGAVRSE 338 >gi|302559665|ref|ZP_07312007.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000] gi|302477283|gb|EFL40376.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000] Length = 376 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 175/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 + G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 TEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + V++ A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPNATG-TVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGD-QVILALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ + K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374 >gi|239980786|ref|ZP_04703310.1| DNA polymerase III subunit beta [Streptomyces albus J1074] gi|291452644|ref|ZP_06592034.1| DNA polymerase III subunit beta [Streptomyces albus J1074] gi|291355593|gb|EFE82495.1| DNA polymerase III subunit beta [Streptomyces albus J1074] Length = 376 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 95/395 (24%), Positives = 174/395 (44%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 + G++ VS LL DI R L + + E+ G ++ G S F L + P E Sbjct: 61 TEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVNCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGDVFASAAAQVAIAAGRDDTLPVLTGVRVEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D SV ++L+ E I Sbjct: 171 RYRFAVREFLWKPEDPETSAVALVPAKTLLDTAKALTSGD-SVTIALAGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RVS+++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVSLVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + L + + D +A+E ++ + I FN +LL+ + I S Sbjct: 289 AGVLTLEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDS-----PAAQLSFT 343 Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 344 TSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374 >gi|292557466|gb|ADE30467.1| DNA polymerase III, beta subunit [Streptococcus suis GZ1] Length = 378 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 2 IQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSHGQISIEHFISIQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A ++V + D + F E E ++ ++ G S L+ Sbjct: 62 DENAGLLISSPGSILLEAGFFINVVSSMPD--LVLDFNEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + VLK + T FA +T+E R L G+ F + E + L Sbjct: 119 EAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTE-NKNLKT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ ++ ++++P +++ E + + +V+V S ++I E Sbjct: 178 VATDSHRMSQRKL-VLDTSGDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 +S RL++G +P+ +IP + NLR +++R ++S + + VKL +++ Sbjct: 237 HISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIAN 296 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + V++P++G+ E ++ V + + I FN YL+E + +S++V Sbjct: 297 NVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTSEQV 346 >gi|212697387|ref|ZP_03305515.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM 7454] gi|212675579|gb|EEB35186.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM 7454] Length = 375 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 84/333 (25%), Positives = 162/333 (48%), Gaps = 11/333 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ D+ + A + + RK I + + +A + L + +S EI I + + Sbjct: 6 MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVACN 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + ++A+++ +IVRKL D K + +++ I S F + +F E Sbjct: 66 VIEEGEMAINANIISNIVRKLPD----ELIKIEVVDSKIKIKCNGSKFNILAFDYYEKKD 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K Y E+ + LK + +T FA + +E + L GI F + D L VA DG+R Sbjct: 122 LKVPNVDY-LEIQNDKLKRSISQTEFATSLDETKLALTGILFEL--MDGYLNFVALDGYR 178 Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + + S +I+PRK++ E RI+ + K+ + I +M Sbjct: 179 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 ++ID + +Y N+I + L V+ L +++R ++++ R +K+++ DK C+ Sbjct: 238 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDK-CLI 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 N ++G E + + + I FN +YL+E Sbjct: 297 ESNSEIGDLKEIIQIQKEGEDVKIAFNARYLIE 329 >gi|315605506|ref|ZP_07880543.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315312773|gb|EFU60853.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 378 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 105/395 (26%), Positives = 181/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A+ L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKADGDELTLSSFDYEVSANSHIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 VD G + VS LL DI + L +S EL G +VN+ G S+F L P E+P Sbjct: 61 VDEAGEVLVSGRLLADISKSLPS-KPVSV----ELDGQKVNLVCGSSHFTLAVMPLDEYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + SS L V + A + ++ L G+ IN + L +ATD + Sbjct: 116 LLPAQPTGIG-AIDSSTLSQAVSQVSIAASRDDTLPLLTGVRIEINGPSITL--LATDRY 172 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLN 231 RLA+ E+D + I +V + + ++ + ++S + V+V LS S I Sbjct: 173 RLAMRELDWEPTDTSIEEIALVKARILQDVAKSMTSG-AKVEVGLSGETQPGASSLIGFT 231 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + L+DG++P + + P S + V+ L +AV R+S+++ R +V+L+ + Sbjct: 232 ASGRRTTSTLMDGDYPAVRRLFPESTPIQAVVDRHALLEAVKRMSLVAE-RKTSVRLAFT 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRL 350 +L + D +A E++ + + FN ++L ID + +V+D D V F Sbjct: 291 EGQLVLEAGQGDNAQASEAIEASLHGDDISTAFNPQFL---IDGL---QVLDTDFVRFGF 344 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384 S I G+ K + +V F Y+LMP+R Sbjct: 345 THSTKPAVITGQRK----VDEGEVTQFRYLLMPIR 375 >gi|229030374|ref|ZP_04186418.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] gi|228730947|gb|EEL81885.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] Length = 376 Score = 99.4 bits (246), Expect = 9e-19, Method: Compositional matrix adjust. Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 38/362 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + + K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAVSAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G+I V A +I++K+ I E + I + L Sbjct: 61 NEDDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQI----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P EFP+ + ++ + L + ++T FA+A E R L G+ H+ + KL Sbjct: 117 LPAYEFPNVPLIDGHTKIQVETERLIEVFKQTVFAVAKNESRPVLTGV--HLELDYNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+ E I + S IVP + E+L++++S V + LSES I Sbjct: 175 CVATDSHRLAIRETMISTDVKA--SCIVPSATISELLKLMTSNSEFVYIYLSESYIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----------V 281 + ++ RLI+G++PN ++IP + ++ + Q VDR ++++S + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNDFQTVINIDRKKILQGVDRSNLLASDWANNNVNLEII 292 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSD 339 A+K+S ++ ++ GK E+ V E ++I F+ +++L+ + I + Sbjct: 293 NESAIKISSNASQI---------GKISETQQVDTIQGEKQLNISFDGRFMLDALKAIKEE 343 Query: 340 EV 341 V Sbjct: 344 TV 345 >gi|300172304|ref|YP_003771469.1| DNA polymerase III subunit beta [Leuconostoc gasicomitatum LMG 18811] gi|299886682|emb|CBL90650.1| DNA polymerase III, beta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 377 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 163/340 (47%), Gaps = 19/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++ L R I + TIP+ ++ + L + S +I I I S Sbjct: 1 MQFSINRQAFIKALNDVSRAISSRTTIPILTNIKIVLTQEELILTGSNSDISIETRIDQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G IT+ A +IV+ L D +S G +I+ G S+F + Sbjct: 61 DTGAQLIIKQPGGITLLATFFSNIVKNLPADDMTLSVD-----GVRASITSGASDFTING 115 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P E + V S ++++ L +++ +T + +T+E R L GI +N D+K Sbjct: 116 QDVHNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK-- 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 AV TD HRL+ V + A + + +I+P K+ E+ +L +D V++ L+ ++ + Sbjct: 174 AVTTDSHRLSQRIVTLTGTDAHVKADVIMPAKSFNELQSLLEGQD-RVEIKLAANQAVFD 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 + + + RL++G +P +IP + +L + + L A++R S++S R V+L+L Sbjct: 233 LGNTTFYSRLLEGNYPETDRLIPTESTTQLTIEASALLGAINRASLLSHESRNNVVQLTL 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329 + + + + ++G+ E + E ++I FN Y+ Sbjct: 293 KNGVVTLIGTSQEVGRVQEELVTKSVEGEDLEISFNPDYV 332 >gi|302543963|ref|ZP_07296305.1| DNA polymerase III, beta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461581|gb|EFL24674.1| DNA polymerase III, beta subunit [Streptomyces himastatinicus ATCC 53653] Length = 376 Score = 99.4 bits (246), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILLKAEEGALSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G V + G S F L + P E Sbjct: 61 VEDDGTVLVSGRLLADICRALPN-------RPVEISSDGVRVTVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374 >gi|254393578|ref|ZP_05008711.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|294813741|ref|ZP_06772384.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|326442162|ref|ZP_08216896.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|197707198|gb|EDY53010.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|294326340|gb|EFG07983.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] Length = 376 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 175/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 VD G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VDEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ E + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPEMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGKGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAHLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374 >gi|323341101|ref|ZP_08081349.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis ATCC 25644] gi|323091522|gb|EFZ34146.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis ATCC 25644] Length = 379 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 85/354 (24%), Positives = 164/354 (46%), Gaps = 20/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +V R+ L+ L A I K T+ + V L + L I S +I I + Sbjct: 1 MKFSVHRAAFLQYLNTAQTAISGKTTLEILTGVKLNLSADALTITGSNSDISIETILSIA 60 Query: 59 -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ GS+ + A +IV++L + +F + I G S F + Sbjct: 61 DEDAQLTIEEPGSVVLPARFFGEIVKRLPED---TFTLTVNDRFQTTIVSGASEFTINGV 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + ++ +LK ++++T A + +E R L GI INE +L A Sbjct: 118 ESEAYPHLPEIDSKDQLKIPGDLLKQIIDQTVIATSKQENRPMLTGIHLTINESEL--TA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + I+VP ++ ++ ++L V++ +SE+++ ++ Sbjct: 176 VATDSHRLSQRKATLENNATGNYDILVPGDSLSKLSKMLGETQEDVELQISENQVLFILD 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 S RL++G++PN +IP S + ++ +L ++++R S++S V+L + Sbjct: 236 HTSFYSRLLEGQYPNTAQLIPNSASTTVEIDAHSLLRSIERASLLSHEGHNNVVRLVIDP 295 Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341 T+ ++P++G E ++ +N+ D I FN Y+ + + EV Sbjct: 296 AANTATIFGNSPEIGNVEEVLD--FNQIEGDELEISFNPDYMKDALHAFGQSEV 347 >gi|148658484|ref|YP_001278689.1| DNA polymerase III subunit beta [Roseiflexus sp. RS-1] gi|148570594|gb|ABQ92739.1| DNA polymerase III, beta subunit [Roseiflexus sp. RS-1] Length = 377 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 83/340 (24%), Positives = 162/340 (47%), Gaps = 16/340 (4%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L ++ HA + K+T+PV ++LL ++DG L++ A+ EI IT I A ++ G++TV Sbjct: 14 LAIVSHA---VAGKSTLPVLSNILLASDDGRLKLAATNLEIGITCWIGAKIEDEGAVTVP 70 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYS 129 A LL D+V L + +I + T +N+ ++ EFP+ ++ + Sbjct: 71 AKLLSDVVGSLPND-RIDLTLDVRTQT-LNLKCARFETNIKGTEAGEFPTIPTIDDRTPA 128 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 ++L+ +E+ FA ATEE R L G+ + D + A DG RLA +++ Sbjct: 129 AIFPPALLRETIEQVAFAAATEETRPVLQGVQLRLR--DNRAIFAAADGFRLAQRIIELP 186 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSVRLIDGEFP 247 I + +I+P +A+ E+ RI+ +S V++ ++ ++ + ++ + RLI+G FP Sbjct: 187 EPIVQQQELIIPARALTELARIVDDDESPVEMMITPGGGQVLFHTSTVDLVSRLIEGRFP 246 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLSSDKLCMTVDN 301 + VIP ++ L +AV S + V+L + ++ ++ + Sbjct: 247 DVDRVIPQQYQTRAVLDRQELTKAVKLASFFAVASSNIVRLHMEPGGEMGPGRITISANA 306 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++G ++ I N K+L + I I + ++ Sbjct: 307 VEVGDNKGQIDATIQGDGGQIALNVKFLSDAIAAIPTPQI 346 >gi|302552696|ref|ZP_07305038.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes DSM 40736] gi|302470314|gb|EFL33407.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes DSM 40736] Length = 376 Score = 99.0 bits (245), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 VD G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VDEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPNATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-QVTLALSGSGSGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374 >gi|302669376|ref|YP_003829336.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus B316] gi|302393849|gb|ADL32754.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus B316] Length = 369 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/366 (23%), Positives = 178/366 (48%), Gaps = 16/366 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +S+++ L + + K T+ + +L+ A +G+++ A+ E+ I + + Sbjct: 1 MKFVCSKSNLVSGLQIVSKAVPSKTTMSILECILVDATEGIIKFIANDMELGIQTVVEGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + DIVRKL D E++ +V IS + F L +F Sbjct: 61 IVERGYIALDAKIFVDIVRKLPDN---DVTIESDSTNKVTISCERAKFNLIGRKGDDFTY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ L+N++++T F++A + + G F ++ E+LKL V+ DGHR Sbjct: 118 LPSIEKIDGVTVSQYTLRNVIQQTIFSIAENDANKMMAGELFEVDGENLKL--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + +IVP K +GEI +IL S + V + ++ + + ++ Sbjct: 176 ISIRKVKLNGSYP-YKKVIVPGKTLGEISKILGDSIEKMVNIYFTDKHVLFEFDKTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + ++ +N +DR +++ + V +S++ K+ + Sbjct: 235 RLIEGEYFSIDQMLSSDYETKISINRKEFLDCIDRATLLVKEGDKKPVIISVTDGKIELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357 + N +G E + + + I FN K+L++ + V+DDE+V + + + Sbjct: 295 I-NSAIGSMDEEIEIDKQGKDLMIGFNPKFLIDAL------RVIDDELVDIYMVNPKAPC 347 Query: 358 FIRGKD 363 FIR K+ Sbjct: 348 FIRDKE 353 >gi|308234058|ref|ZP_07664795.1| DNA polymerase III, beta subunit [Atopobium vaginae DSM 15829] gi|328943455|ref|ZP_08240920.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM 15829] gi|327491424|gb|EGF23198.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM 15829] Length = 369 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 86/363 (23%), Positives = 172/363 (47%), Gaps = 14/363 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V + + + + R + + T+PV + +QA L ++ ++ I + A+ Sbjct: 1 MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V L +V+ L D A I+ T+ ++ S + L + ++FP Sbjct: 61 VEEEGQTVVPGLFLSKLVKNLPD-APITM---ETTPTQAILTCLKSTYELSTLDAADFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S EL S +L ++VER + + E+I + G + +E+ KL ATD HR Sbjct: 117 FPDITPSQSIELPSDLLNDMVERV-YRVTKEDISNPILGGITLVAQEN-KLTMYATDSHR 174 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + + + A I + I+P E+L L + +++ L+++++ + E+ + Sbjct: 175 LVIIDTNTETASIDSEFTAIIPAVCFHELLN-LPTITPRLQIGLTDNQVIFSFENTTYVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 I+G FPNY+N+ P + + +L VN L QA+ RV+++++ + V + +T+ Sbjct: 234 LKIEGMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITL 293 Query: 300 --DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D+ + G + E + P+ NY+++LE + + DE+ F + S + Sbjct: 294 KADSSEFGASKEEFSATIEGNPISFSMNYQFILECCRSTTH----ADEMTFEIVDSFQPI 349 Query: 358 FIR 360 I+ Sbjct: 350 VIK 352 >gi|329768085|ref|ZP_08259594.1| DNA polymerase III [Gemella haemolysans M341] gi|328838240|gb|EGF87852.1| DNA polymerase III [Gemella haemolysans M341] Length = 379 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 90/360 (25%), Positives = 178/360 (49%), Gaps = 30/360 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV---------SCHVLLQANDGLLEIKASGPEI 51 MK T+ +S+ L+ L H R+I + + ++L+A+D L+ ++ S Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDQLILKASDSLVSVEYSINSY 60 Query: 52 EITGAIPASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENEL----GTEVNISHGDS 106 E I +++ G + + + +I+RK D +I + N L +E N+ D+ Sbjct: 61 EDDKEI-ITIEEEGQVVLPSRNFIEIIRKAPTDLIEIETIENNILVKSGKSEFNVKGYDA 119 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 N Y EFP +E S +L +++ ++++ T F A + R L G+ F ++ Sbjct: 120 NDY------PEFPVISKEN---SLKLEANIFNDIIKETVFCTAPNDQRPILEGVNFSLSN 170 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 + L A ATD +RL+ +V + + + K ++I+PRKA+ R++ + V++ Sbjct: 171 K--ILTATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYEN 228 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQ 284 +RI L +++ +V LI G +PN +IP + N AVDRV++MS + Sbjct: 229 NRIVLYYQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFNAVDRVALMSREDKDD 288 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 +KL ++ + L ++ + D+G A+E + V + +I + KYL + + ++++E++ Sbjct: 289 IIKLVVTDNLLEVSSQSKDLGSAVEELKVSSTLEDDKFEISVSGKYLKDAVSAVAAEEII 348 >gi|298294438|ref|YP_003696377.1| DNA polymerase III subunit beta [Starkeya novella DSM 506] gi|296930949|gb|ADH91758.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506] Length = 406 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 76/300 (25%), Positives = 132/300 (44%), Gaps = 23/300 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ER+ +L L + ++KN IP+ HV L+ LL + A+ + IPA Sbjct: 1 MKLIAERTHLLAALKTVGHLAQKKNPIPLLRHVRLRTVGRLLFVAATDQDAYAEAEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 V+ GS T+ A +L +V DG+Q+ L T I G S + P +FP Sbjct: 61 VERQGSTTIDADVLQRMVNNFADGSQVYIDAGEALAT---IKAGRSRYQPPVLPADDFPA 117 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + KE++ + V + LV A + + L G++ H +++D L A ATD Sbjct: 118 MFAPKEKDAARFTLMPEEVKRLLVVPRPAAPKGQADKQQLEGVYLHTSDDDRTLWAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSII--------------VPRKAVGEILRILSSK---DSSVK 220 G A++ AK+P ++ VP AVG ++++ + ++ Sbjct: 178 GLTFIAADIPAPEGAAKLPKLVEPGEHGAGRPRGLMVPMDAVGHLIKLGENGLEIEADTN 237 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 V + + + + +S + RLID FP Y+ +P + V A+ R++ M+ Sbjct: 238 VLAARAGLPSSAVKVSYATRLIDNRFPPYERFLPPLEGVSILVEAGAFADAIKRLADMAG 297 >gi|15826867|ref|NP_301130.1| DNA polymerase III subunit beta [Mycobacterium leprae TN] gi|221229345|ref|YP_002502761.1| DNA polymerase III subunit beta [Mycobacterium leprae Br4923] gi|1169395|sp|P46387|DPO3B_MYCLE RecName: Full=DNA polymerase III subunit beta gi|886326|gb|AAB53142.1| DNA polymerase III beta subunit [Mycobacterium leprae] gi|1262353|emb|CAA94709.1| DnaN [Mycobacterium leprae] gi|13092414|emb|CAC29510.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae] gi|219932452|emb|CAR70095.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae Br4923] Length = 399 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 173/401 (43%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + T+PV VLL +D L I E+ + A Sbjct: 13 LKFCLARESFASAVSWVAKYLPTRPTVPVLSGVLLTGSDSGLTISGFDYEVSAEVQVAAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DI R L + + F+ + G V ++ G + F L + ++P+ Sbjct: 73 IASSGSVLVSGRLLSDITRALPN-KPVHFYVD---GNRVALTCGSARFSLPTMAVEDYPT 128 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T +E + L S V + + A + L GI I+ + + L ATD Sbjct: 129 LPTLPDE---TGTLPSDVFAEAIGQVAIAAGRDYTLPMLTGIRIEISGDTVVLA--ATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230 RLAV E+ + S++VP K + E+ + + S V +SL + + Sbjct: 184 FRLAVRELKWSVLSSDFEASVLVPAKTLVEVAKA-GTDGSGVCLSLGAGVGVGKDGLFGI 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ Sbjct: 243 SGGGKRSTTRLLDAEFPKFRQLLPAEHTAVATIDVAELTEAIKLVALVAD-RGAQVRMEF 301 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F Sbjct: 302 GDGILRLSAGADDVGRAEEDLAVAFTGEPLTIAFNPNYLTDGLASVHS-----ERVSFGF 356 Query: 351 DSSNSSVFIRGKDKDSKN-NKDNKVNAF-----YVLMPMRI 385 + + +R D + D A Y+LMP+R+ Sbjct: 357 TTPSKPALLRPTSNDDVHPTHDGPFPALPTDYVYLLMPVRL 397 >gi|88658239|ref|YP_507796.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis str. Arkansas] gi|88599696|gb|ABD45165.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis str. Arkansas] Length = 182 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 6/180 (3%) Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 +SA LLYDIV+KL + +I FF + + I G + F+L +FP + E Sbjct: 1 MSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENNELQN 58 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHRL++ ++ Sbjct: 59 KFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLTKLSQ 116 Query: 189 VAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 + IIVP+K V EIL+I+S S + + +SLS+ +I + + ++ID F Sbjct: 117 SQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTF 176 >gi|228958921|ref|ZP_04120624.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800760|gb|EEM47674.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 376 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 16/288 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L + HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTEV--HIELSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATINELLKLMNSNSEFVYIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280 >gi|78185893|ref|YP_373936.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] gi|78165795|gb|ABB22893.1| DNA polymerase III, beta subunit [Chlorobium luteolum DSM 273] Length = 378 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 91/351 (25%), Positives = 171/351 (48%), Gaps = 23/351 (6%) Query: 40 GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---G 96 G L + AS E+ IT G+I + A L D +R + D + + + E+ G Sbjct: 44 GELTLFASDGEVSITAKSGVESSDSGNIGIRARTLQDFLRSMYDTSVMFSIERQEISDHG 103 Query: 97 TEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 T V+IS + + +S+ P ++++Y S E+ +S + +L+++T FA + + +R Sbjct: 104 T-VSISTDKGRYRIPCLFQSK-PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPA 161 Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 + G+ F + E + AVATDGHRL +++ ++VP + + IL+ L+ D Sbjct: 162 MMGVLFEL--EGSIITAVATDGHRLVRCRKASSVDLSEKNKVVVPARVLS-ILQKLAQTD 218 Query: 217 SSVKVSLSESR-IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 S SE + + S+ + LI +PNY+ VIP +D+ L +N + + +V RV Sbjct: 219 SVTMQFDSERKFVRFICGSIVLDAALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRV 278 Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIID 334 SS I VK+ L + + +N + G+ A E + ++ M I FN +++ + Sbjct: 279 GRFSS--IGDVKVVLEGQMMKIMAENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALA 336 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++E+ L S ++V R ++ + N ++MP+RI Sbjct: 337 HLD-----ENEIRIELKSPTTAVIFRPHGEEEND------NLIILVMPVRI 376 >gi|84497193|ref|ZP_00996015.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649] gi|84382081|gb|EAP97963.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649] Length = 377 Score = 98.6 bits (244), Expect = 1e-18, Method: Compositional matrix adjust. Identities = 94/397 (23%), Positives = 175/397 (44%), Gaps = 36/397 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + +PV +L++AND G + + A E+ +PA Sbjct: 1 MKFRVEREVLAEAVTWVARGLPARPPVPVLAGILIEANDEGTVTLSAFDYEVSARLTVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116 V G++ V LL DI R L + K ++ G++V + G S F L P Sbjct: 61 EVSESGTVLVLGRLLADISRNLPN-------KPVDVEVQGSKVQVVCGSSRFSLLQMPSD 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ S + + V + A + L G+ I E K+ +AT Sbjct: 114 DYPTLPSSPE-PSGSIDGQLFTQAVNQVSIAADRGDTLPILTGVRVEI--EGDKMTLLAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSII-VPRKAVGEILRILSSKDSSVKVSLSESR-----IHL 230 D +RLA+ E+ + I+ VP + + + R L + S+ V+L + + Sbjct: 171 DRYRLAMRELTWNPTDSAASHIVLVPARTLADTARSLGAS-GSIDVALGSAAGGDGLVGF 229 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 S + RL+DGE+P ++ P +++ E VN L +AV RV++++ R V+L Sbjct: 230 EAGSRRTTTRLLDGEYPKVSSIFPTTSETESVVNTAELVEAVKRVALVAE-RNTPVRLRF 288 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + ++ + + +A E++ +++ FN +LL+ + + ++ RL Sbjct: 289 TEGQVAIEAGTGEDAQASEAVEATLTGPDVEVAFNPGFLLDGLGAVGTE-------FSRL 341 Query: 351 ---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S +V + D + + + YV+MP+R Sbjct: 342 SFTQPSRPAVLSGQAEADGEADTSYR----YVIMPVR 374 >gi|284047390|ref|YP_003397729.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM 20731] gi|283951611|gb|ADB46414.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM 20731] Length = 375 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 81/349 (23%), Positives = 165/349 (47%), Gaps = 14/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58 M+ + E ++ + + R I N P+ H +LQ N L++ A + + Sbjct: 1 MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNT--LQLIAMDNTYMMNKKLD 58 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK---ENELGTEVNISHGDSNFYLQSFPE 115 + + G + + A + D++ + ++ + E E+ + + G + L PE Sbjct: 59 VNGEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMD-PE 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P+ + + +L ++ L+ T +A +T+ R G++ + + L AV Sbjct: 118 -EYPAMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQ--HLTAVG 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES 234 T+ HRLA+ EV++ S+++P + + EI L+ + V ++L E +I + S Sbjct: 175 TNTHRLAIKEVELPEGDDSEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGS 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 L++ LI+G+FP+Y+ IP S N ++ +A+ RVS+ S V+L++ +D Sbjct: 235 LTIISSLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADG 294 Query: 295 LCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++ DMG+ E + + P++I FN +Y+ + N +D V Sbjct: 295 ITLSSAVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGTDRV 343 >gi|256370586|ref|YP_003108411.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri SMDSEM] gi|256009378|gb|ACU52738.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri SMDSEM] Length = 371 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 93/369 (25%), Positives = 183/369 (49%), Gaps = 13/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK +++L L +I N +P+ + L + + +L I S EI +T ++ Sbjct: 1 MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLNI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + +L +I++K+ + ++F KE E ++ +G+ + L F E+P Sbjct: 61 NSINFGSAVIPHKILLEILKKIPEQP-LTFCKEKENKLKILSQNGE--YDLSIFSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 F ++ +L N++ T FA+ +EIR LNG+FF I E ++ V+T+ + Sbjct: 118 KYSLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDI-ENNIS-NFVSTNSN 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + ++ K +I+P+K + + L+ +++V +S ++ + + Sbjct: 176 FLVKYSIKDLS-FNKEIRLIIPKKPLNILKYNLNDTNNNVYISYNDLNTSFFFKKKKIIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM-T 298 LI+G +PNY++++ +K L +N A+ RV++ S+ + L+ S + + + Sbjct: 235 SLINGNYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D KA E + Y+ P++I FN KYL+EI+ NI+ +++ F + ++NSS Sbjct: 295 FDINYNKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINC-----EDIKFEMLNNNSSCR 349 Query: 359 IRGKDKDSK 367 I K+SK Sbjct: 350 ITPLMKNSK 358 >gi|293191013|ref|ZP_06609057.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309] gi|292820700|gb|EFF79666.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309] Length = 378 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 102/395 (25%), Positives = 179/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 D G + VS LL DI + L +S EL G +VN+ G S+F L P E+P Sbjct: 61 ADEAGEVLVSGRLLADISKSLPS-KPVSV----ELDGQKVNLVCGSSHFTLAVMPLDEYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + SS L V + A + ++ L G+ IN + L +ATD + Sbjct: 116 LLPAQPTGVG-AIDSSTLSQAVTQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRY 172 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLN 231 RLA+ E+D + + +V + + ++ + ++S + V+V LS S I Sbjct: 173 RLAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFT 231 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + L+DG++P + + P + + V+ L +AV R+S+++ R +V+L+ + Sbjct: 232 AQGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVAE-RKTSVRLAFT 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRL 350 +L + D +A E++ N + FN ++L ID + +V+D D V F Sbjct: 291 EGQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFL---IDGL---QVLDTDYVRFGF 344 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384 I G+ K + +V F Y+LMP+R Sbjct: 345 THPTKPAVITGQ----KKADEGEVTQFRYLLMPIR 375 >gi|118615921|ref|YP_904253.1| DNA polymerase III subunit beta [Mycobacterium ulcerans Agy99] gi|118568031|gb|ABL02782.1| DNA polymerase III (beta chain) DnaN [Mycobacterium ulcerans Agy99] Length = 402 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 35/384 (9%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + + +PV VLL +D L I E+ +PA + G++ VS LL DI R Sbjct: 33 LPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEIASPGTVLVSGRLLSDITRA 92 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138 L + F+ + G V ++ G++ F L + ++P+ T E+ + L + + Sbjct: 93 LPK-KPVDFYVD---GNRVALTCGNARFSLPTMAVEDYPTLPTLPED---TGTLPAELFS 145 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197 + + ++ L GI I+ E K+ ATD RLAV E+ A + + Sbjct: 146 EAIGQVAITAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRLAVRELTWNALSPDIEAA 203 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++VP K +GE + ++ S V++SL + + ++ + + RL+D EFP ++ Sbjct: 204 VLVPAKTLGEAAKA-NTDGSEVRLSLGAGMGVGKDGLLGISGDGKRSTTRLLDAEFPKFR 262 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 ++P + + L +A+ V++++ R V++ + L ++ D+G+A E Sbjct: 263 QLLPAEHTAVASADVAELTEAIKLVALVAD-RGAQVRMEFADGMLRLSAGADDVGRAEED 321 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367 + V + P+ I FN YL++ + ++ S + V F + +R +D+ Sbjct: 322 IAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGFTTPGKPALLRPASAEDRIVS 376 Query: 368 NNKDNKVNA------FYVLMPMRI 385 D A Y+LMP+R+ Sbjct: 377 GPGDQGPFAAVPTDYVYLLMPVRL 400 >gi|320527129|ref|ZP_08028316.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204] gi|320132457|gb|EFW25000.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204] Length = 373 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 85/349 (24%), Positives = 174/349 (49%), Gaps = 16/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVL-LQANDGLLEIKASGPEIEITGAIPA 59 M +T+ +++ L R I N+ S L + D + + S +I I I A Sbjct: 1 MNLTISKTEFYNTLQLVSRAIS-PNSPQTSLRGLKIDVKDNSMVVTGSDADISIQHTITA 59 Query: 60 S----VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + +++ GSI + + L +IVRK+ D +I E G+ S + F + Sbjct: 60 NDKNKLNILEEGSILIESKYLLEIVRKI-DSEEIHV--EIIDGSLTKFSGNSAVFKINGM 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P+ + S ++SSV+ +++E+T FA + +E + L G+ FH++ D LC Sbjct: 117 NPHDYPTIDFSKPANSVVISSSVMSDIIEQTTFATSIKETKPVLTGVNFHLS--DNTLCC 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNI 232 ATD +RLA + + + ++ +P K++ E+ + DS +++ L++ + Sbjct: 175 TATDSYRLAKKTIPFTS--SDNFNVTIPSKSLNEVKSTMIGDDSGEIQIYLNDKKAQFVN 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 E + + RL+DG +P +IP L +N ++L A+DR + + + + +L S+ Sbjct: 233 EDMILQTRLLDGGYPETDRLIPKEFKYTLEINRSDLIHAIDRTTFIKTDNMTINRLQCST 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 D++ +T + ++G++ E++ + P+DI F+ Y++E +I D++ Sbjct: 293 DEVVLTNKSQEIGESHETLVGTFTGEPLDISFSGNYVMEAARSIRGDKL 341 >gi|298372804|ref|ZP_06982794.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275708|gb|EFI17259.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 377 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 176/353 (49%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +++ R+++ L ++I K IP++ + L + + +L I A+ E ++ AI + Sbjct: 1 MNLSISRNELYNKLAIVQKVINSKTPIPIAENFLFKIENNVLTIVATDLETTLSTAI--N 58 Query: 61 VDVC-GSITVS-AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF----- 113 ++ C GSI + + +I+++L + QI +E ++++ +S Y F Sbjct: 59 LENCPGSIIFAMPPKIMEILKELPE--QILSISIDEETFKIDL-QNESGSYKSDFLGIGV 115 Query: 114 --PESEFPSTKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 +FP KE + Y S ++ S +L N + RT FA A E+ R + G+ F + + ++ Sbjct: 116 GQNGEDFPRPKELDTEYKSLKITSELLLNGISRTVFATAEEDSRPTMTGVLFDMFDNNIT 175 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD H+L + + I S I+P+K + IL D +++S + I Sbjct: 176 F--VATDAHKLVKYNMSNI-NIGFENSFILPKKPALTLKNILVRTDELIEISFDDKNISF 232 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + M R I+G++PNY VI + K + V+ +L A+ RV + SS + ++ Sbjct: 233 RMPEYEMICRRIEGKYPNYNAVIQKNPFKAI-VDRQSLLSAIKRVKVFSSQGTGLIIFNI 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 S +K+ ++ + D + + + V Y++ PM+I F L EI+ N+ +++V Sbjct: 292 SENKIEVSTQDIDFSTSAKEIIVCQYSDQPMEIGFKAALLEEILSNMQDNQIV 344 >gi|308235534|ref|ZP_07666271.1| DNA polymerase III subunit beta [Gardnerella vaginalis ATCC 14018] gi|311114015|ref|YP_003985236.1| DNA-directed DNA polymerase III subunit beta [Gardnerella vaginalis ATCC 14019] gi|310945509|gb|ADP38213.1| DNA-directed DNA polymerase III beta subunit [Gardnerella vaginalis ATCC 14019] Length = 372 Score = 98.6 bits (244), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 100/391 (25%), Positives = 186/391 (47%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG+L++ A ++ + A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKLEAKDGILQLSAFNYQLSSRHHVEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D GS+ V L+ DI + L ++ ++ NE T + IS G S F LQ PE E+P Sbjct: 61 IDEQGSVLVLGKLMADITKSLP--SEKTYLSSNE--TTLTISSGKSTFTLQLMPEGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + A + ++ +V+ + A++ EE R L GI H ED + ATD +R Sbjct: 117 LPQIPEKLGQVDAPTFVQAVVQAS-VAVSREEDRPVLTGIHAHF--EDDSVTFTATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHL----NIE 233 LA + + + + + + G ILR +S + +V V+L++ + N Sbjct: 174 LARSTFKWTPEHFDINTSTLIK---GSILRDISRSIDEHQNVIVNLNDKEPSILGFENSG 230 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S S +LIDGEFP+ + +N T L A+ RV++++ + + +S S D Sbjct: 231 RVSTS-QLIDGEFPSVDRLFVDEYPIHAIINRTMLINAIKRVALVAE-KDAPIYMSFSGD 288 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L ++ N +A E +++ + + + FN YL+E + IS + V ++ S+ Sbjct: 289 ELTLSAGNDSESQAKELIDIDMDGQDIIVAFNPNYLIEGLSAIS-----EPFVHAKITSA 343 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+ + + D +N Y+++PM Sbjct: 344 VKPVEFNGQ---QEADGDESMNYRYLVVPMH 371 >gi|331092113|ref|ZP_08340944.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330402314|gb|EGG81885.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 369 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 92/386 (23%), Positives = 187/386 (48%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A + +IVRKL D ++ ++ L T + N +S E S P Sbjct: 61 IIEKGLIAIDAKIFSEIVRKLPDN-EVVIETDSNLQTLITCEKAKFNISGKSGEEFSYLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++EE V EL+ LK ++ +T F ++ + + G F INE LK+ VA DGH Sbjct: 120 YIEKEEPV---ELSQFTLKEIIRQTIFTISDHDSNKLMTGELFEINENILKV--VALDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 R+++ +V+++ A +IVP K + E+ +ILS + +S + + + I + + Sbjct: 175 RISIRKVELMNNYAS-KKVIVPGKTLIEVSKILSGEVESKANIYFTPNHIVFEFDQTVVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ ++ + ++RVN L +DR ++ + + +++ + + + Sbjct: 234 SRLIEGEYFKIDQMLSSDYETKVRVNKKELLSCIDRAMLLVKEGDKKPIIINIGDEAMEL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + +G E + + + I FN K+L++ + I D+E+ L ++ + Sbjct: 294 KIQS-QLGSMNEDILITKEGKDLLIGFNPKFLMDALRVIE-----DEEIQIYLTNAKAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FIR D K + Y+++P+ Sbjct: 348 FIR----------DEKESYIYLILPV 363 >gi|297158792|gb|ADI08504.1| DNA polymerase III subunit beta [Streptomyces bingchenggensis BCW-1] Length = 376 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A D L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEDSTLSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G V + G S F L + P E Sbjct: 61 VEDDGTVLVSGRLLADICRALPN-------RPVEISTDGVRVTVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P T + + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YP-TLPQMPTATGTVPGDVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+L+ Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLTFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPAMDAEADEAYK----YLIMPVRL 374 >gi|283797184|ref|ZP_06346337.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1] gi|291075142|gb|EFE12506.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1] gi|295090279|emb|CBK76386.1| DNA polymerase III, beta subunit [Clostridium cf. saccharolyticum K10] Length = 372 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 101/401 (25%), Positives = 188/401 (46%), Gaps = 54/401 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ E+ +L + + + K T+P+ +L+ A +++ + E+ I + Sbjct: 1 MKLSFEKDSLLNGINIVLKAVPSKTTMPILECILIDATGTEIKLTGNDMELGIETQVEGL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G + + A L DI+RKL G + E++ IS S F +Q EF Sbjct: 61 ILERGKVALDAKLFSDIIRKLS-GEESPIIIESDEKNNTTISCDKSVFKIQGKDGDEFSY 119 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + + Y+ L+ LK ++ +T F+++ + + G F +N+ +LK+ V+ D Sbjct: 120 IPHIERDRYI---TLSQFTLKEVIRQTLFSISPNDSNKMMTGELFEVNDNELKV--VSLD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 GHR+++ ++++ + +IVP K +GEI +IL+ +S V++ S + I +S Sbjct: 175 GHRMSIRKIELKDHYNDI-KVIVPGKTLGEISKILNGDNESEVQIFFSSNHIMFEFDSTL 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLI+GE+ ++ S+D E +VN V+R + + S+ +A L +DK Sbjct: 234 VVSRLIEGEYFRISQML--SSDYETKVN-------VNRRAFLDSIE-RASILIRENDKKP 283 Query: 297 MTVDNPDMGKAIESMNVYYNECPMD-----------ICFNYKYL---LEIIDNISSDEVV 342 + + D G ++ MN Y + I FN K+L L IID Sbjct: 284 IIITITDEGMQLK-MNSAYGTMNAEVGITKFGKDIMIGFNPKFLIDALRIID-------- 334 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 D+EV + + S FI KD++ N Y+++P+ Sbjct: 335 DEEVTLYMMNPKSPCFI----------KDDEENYIYLILPV 365 >gi|167748044|ref|ZP_02420171.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662] gi|167652524|gb|EDR96653.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662] Length = 367 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 88/386 (22%), Positives = 184/386 (47%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD++ + + + K T+P+ +L++A+ G + + A+ E+ I I + Sbjct: 1 MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L ++IVRKL D E + + I+ + F++ SEFP Sbjct: 61 ILEQGKIALDAKLFFEIVRKLPDN---DVTIETDSDYKATITCEKACFHIVGQEGSEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S L+ LK ++ +T F+++ E + G F + ED KL V+ DGHR Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFEV--EDKKLNVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + EI +I+S + V + ++ I + + Sbjct: 176 ISIRNIELKESYDSF-KVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298 RL++GE+ ++ + ++ +N +DR S++ + + ++++ + L ++ Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357 + + G E++ + + I FN K+L++++ V+DDE + L + + Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVL------RVIDDEEINIYLVNPKAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FI KD+ + Y+++P+ Sbjct: 348 FI----------KDDSESYIYLILPV 363 >gi|160893410|ref|ZP_02074195.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50] gi|156864805|gb|EDO58236.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50] Length = 363 Score = 98.2 bits (243), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 87/381 (22%), Positives = 181/381 (47%), Gaps = 24/381 (6%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66 + +++ + + + + K T P+ + ++A +G +++ A+ EI I + +V G Sbjct: 2 KGKLMQGISNVSKAVSTKTTHPILSCIFIEAENGNIKLTANDMEIGIESYVEGTVIEEGK 61 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 + + A LL DIVRKL D ++I + T + S F + +F S E Sbjct: 62 VAIEAKLLSDIVRKLPD-SEIHMETNEDFKTTIKCEK--SLFTIAGKSGEDFSSLPVVEK 118 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 ++ L+ ++ +T F+++ E + G F ++ L++ VA DGHR+A+ V Sbjct: 119 SKFITISQFTLREIINQTIFSISDSEYNNVMTGELFEVSNNRLRV--VAIDGHRIAIRNV 176 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 ++ + ++ +IVP KA+ I +I+S D V + +++ I + + RL++GE Sbjct: 177 ELKNE-SEDVKVIVPGKALSYISKIVSGGVDDDVNIYFADNNILFEFDRTKVVSRLVEGE 235 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDM 304 F N++ + +N +DR S++ + +KL++ + L + +D+ + Sbjct: 236 FFRIDNMLNVDYQIKFTINKREFLDCLDRSSLLIKESDKKPIKLTIEDNMLYLKIDSL-I 294 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 G E + ++ + I FN K+L++ I I DD++ ++++ S I Sbjct: 295 GSMNEEIEIHKEGNNIIIGFNPKFLMDAIRAIE-----DDDITIYMNNTKSPCVI----- 344 Query: 365 DSKNNKDNKVNAFYVLMPMRI 385 KD + + Y+++PM I Sbjct: 345 -----KDEEESYIYLILPMGI 360 >gi|156028374|gb|ABU42566.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 197 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 53/204 (25%), Positives = 120/204 (58%), Gaps = 7/204 (3%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + + + L VATDG+RL + ++ + I S+I+PRK + E+ R+L+ Sbjct: 1 RYYLNGML--LKKNNTFLYTVATDGYRLGITKIFLQKDIIIPFSVIIPRKGILELYRLLN 58 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + + + + ++ I ++I L + +LI+G++P+Y+++I + + +NC L++++ Sbjct: 59 IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESIIIIIKKEPIILNCQLLKKSLL 118 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I+S + +++ + ++L + DN + A + N+ Y+ + + N Y+++++ Sbjct: 119 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 178 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + I+S + + L+ SN+S+ Sbjct: 179 NTITS-----ENIFLYLNESNNSI 197 >gi|119394194|gb|ABL74459.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 195 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 117/204 (57%), Gaps = 9/204 (4%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + +E L AVATDG+R+ + + I + S+I+PRK + E+ ++L+ Sbjct: 1 RYYLNGML--LKKEKTLLYAVATDGYRMGITKTSIQEDVVPF-SVIIPRKGIVELYKLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 K ++ + ++ I + IE L +++LI+G +P+Y ++ + + +N L+Q++ Sbjct: 58 IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTGILLKHKNCPIILNSQQLKQSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I++S +++ + ++K + DN + +A +S + Y ++I N Y+L+I+ Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEE-ERAEDSFKINYFNNEVEISINVYYILDIL 176 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + ISS + L+ SN+S+ Sbjct: 177 NVISS-----KNIFLFLNESNNSI 195 >gi|307564548|ref|ZP_07627088.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A] gi|307346706|gb|EFN92003.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A] Length = 374 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 91/368 (24%), Positives = 168/368 (45%), Gaps = 19/368 (5%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDI 77 ++I KN I + L + + L I AS E I I S D S V+ + D Sbjct: 19 KVIANKNAIAILDCFLFEIKNNQLTITASDSENTIHCIIELDSADGEASFAVNNQTIIDA 78 Query: 78 VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSV 136 V++L + NE + +G NF + F E+P + + + S++ Sbjct: 79 VKELPEQPLSLDVNMNEQKIYITYQNGSYNFPI--FSAEEYPRVQTVSSDATTIVIDSNI 136 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 L + + R+ FA A +E+R +NG++F + + L + VATDG +L ++ + K Sbjct: 137 LVDAITRSLFATAQDELRPVMNGLYFDLLSDSLSI--VATDGQKLVRNKIFTIKS-DKES 193 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 + I+P+K + +LS V + + ++ ++S RLI+G FPNY +VIP + Sbjct: 194 AFILPKKPANLLKNVLSKDGGDVIIRYDQRSAEISYAEGNLSCRLIEGRFPNYNSVIPVA 253 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYY 315 N ++ ++ +L A+ RV +S ++ + L + ++ D A ES+ Y Sbjct: 254 NPNQIVIDRRSLIGAIRRVLPFASEASPLIRFRIEQGVLTLNAEDIDFSTSAKESVVCNY 313 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 M I F +L+I++N+ D+V + D S + + + K ++ V+ Sbjct: 314 AGNAMSIGFKGTSMLDILNNLDGDDV----TIELADPSRAGIVLPNKQLEN-------VD 362 Query: 376 AFYVLMPM 383 ++MPM Sbjct: 363 VLMLIMPM 370 >gi|29830860|ref|NP_825494.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680] gi|29607973|dbj|BAC72029.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis MA-4680] Length = 376 Score = 97.8 bits (242), Expect = 2e-18, Method: Compositional matrix adjust. Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLRAEDGALSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPNATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + ++ +VP K + + + L+S D SV ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-SVTLALSGSGSGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374 >gi|300213941|gb|ADJ78357.1| DNA polymerase III, beta chain [Lactobacillus salivarius CECT 5713] Length = 352 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 69/282 (24%), Positives = 147/282 (52%), Gaps = 9/282 (3%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G++ + A +IV+KL + Q + NE + I+ G + F + E+P E Sbjct: 38 GAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGLNAEEYPHLPEI 94 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + + +LK ++ +T A++ +E R L GI H+ ++ +L AVATD HRL+ Sbjct: 95 DSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLAVATDSHRLSQR 152 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + + + +I+P K++ E+ +++S D ++++ +SE++ + + S RL++G Sbjct: 153 IIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILGNTSFYTRLLEG 212 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSDKLCMTVDN 301 ++P+ + +IP ++ + N L Q+++R S++S R VKL++ S + ++ + Sbjct: 213 KYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINPSVQSVVLSGNT 272 Query: 302 PDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342 P++G E ++ E ++I FN Y+ + + + E+ Sbjct: 273 PEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 314 >gi|290959003|ref|YP_003490185.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22] gi|260648529|emb|CBG71640.1| DNA polymerase III, beta chain [Streptomyces scabiei 87.22] Length = 376 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 99/396 (25%), Positives = 176/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 VD G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VDEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPSLPQMPNATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D SV ++LS E I Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-SVILALSGSGSGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374 >gi|111658628|ref|ZP_01409278.1| hypothetical protein SpneT_02000218 [Streptococcus pneumoniae TIGR4] Length = 341 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 71/282 (25%), Positives = 142/282 (50%), Gaps = 9/282 (3%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GSI + A ++V L D ++ FKE E ++ ++ G S L+ ++P + Sbjct: 35 LGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLKGKDSEQYPRIQ 90 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 E L + +LK ++ T FA +T+E R L G+ F +++ +L VATD HRL+ Sbjct: 91 EISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTVATDSHRLS 149 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 ++ + +++P +++ E + + +V++ + ++I E++S RL+ Sbjct: 150 QKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSENISFYTRLL 208 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTVDN 301 +G +P+ +IP + + N NLRQ+++R ++SS VKL + + V + Sbjct: 209 EGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHVHS 268 Query: 302 PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 P++GK E ++ + I FN YL++ + ++S++V Sbjct: 269 PEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 310 >gi|291276245|ref|YP_003516017.1| DNA polymerase III subunit beta [Helicobacter mustelae 12198] gi|290963439|emb|CBG39268.1| DNA polymerase III, beta chain [Helicobacter mustelae 12198] Length = 354 Score = 97.8 bits (242), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 74/311 (23%), Positives = 164/311 (52%), Gaps = 20/311 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V ++ +L H +++K++ ++ H+ L+ + L++KA+ EI + + Sbjct: 1 MKFHVNKNHFEIILNHLQPFLDKKDSSQITSHIYLETKEEKLQLKATDYEIGLETKVDIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TV+ + +IV++L++G +I+ +++ ++I G S F L F +E+P Sbjct: 61 KEIDGNATVNGKKILEIVKRLKEG-EITIETDSQ---NLHIKQGKSKFKLPMFDANEYPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + +S +++ A+ + + L G +D VATD R Sbjct: 117 NIVDKNITEIHFDTSSFIQSLKKITPAIDSTNQKPELTGALLEF--KDYSFHFVATDTRR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + DI Q + SII+P+KA+ EI ++ S ++K+ +E+++ + E S R Sbjct: 175 LALIKQDI--QSIESFSIILPKKAISEISKLFS---ENIKIFYNETQLIIENEYYSFFTR 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLR-QAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 LI+G FP+YQ ++P KEL++ + + ++ + +++S+ Q +K++L ++ Sbjct: 230 LINGRFPDYQKILP----KELKIQLQLPKDKVIEAIRLINSLS-QKIKITLRESEVFFET 284 Query: 297 MTVDNPDMGKA 307 ++++N + + Sbjct: 285 ISIENSEQAQT 295 >gi|253581086|ref|ZP_04858346.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847622|gb|EES75592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 371 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 89/391 (22%), Positives = 190/391 (48%), Gaps = 32/391 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ ++L+ + + + + K T+P+ +L+ A ++ + E+ I + Sbjct: 1 MKIICQKINLLKSVNISLKAVPSKTTMPILECILIDATTNQIKFTTNDMELGIETIVDGI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 ++ G I + A + Y+I+R+L D K +E T I+ + F + +F Sbjct: 61 IEEKGIIALDAKIFYEIIRRLPDNTVT--IKTDEKLT-ATITCEKAKFTIPGKSGEDFAY 117 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P ++EE S ++ LK ++ +T F++A+ E + G F I LK+ V+ D Sbjct: 118 LPLIEKEE---SLTISQFTLKEMIRQTIFSIASNETNKLMTGELFEIKNNYLKI--VSLD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 GHR+A+ +++ A ++VP K + EI +ILS + D V + S++ I + Sbjct: 173 GHRIAIRRMELKKDYADR-KVVVPGKTLNEISKILSGEIDDIVNIYFSKNHILFEFDQTI 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKL 295 + RLIDGE+ ++ + ++++N +DR +++ + + + ++ + + Sbjct: 232 VVSRLIDGEYFRIDQMLSSDYETKIKINKKEFLDCIDRATLLVREGEKKPIIIEITDNSM 291 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSN 354 + +D+ MG E++++ + I FN ++L++ + +V+DDE + L + Sbjct: 292 ELRIDSA-MGSMNENIDIDKEGKDILIGFNPRFLIDAL------KVIDDETISIYLVNPK 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + FIR D++ N Y+++P+ I Sbjct: 345 APCFIR----------DDEENYTYLILPVNI 365 >gi|269124279|ref|YP_003297649.1| DNA polymerase III subunit beta [Thermomonospora curvata DSM 43183] gi|268309237|gb|ACY95611.1| DNA polymerase III, beta subunit [Thermomonospora curvata DSM 43183] Length = 375 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 91/396 (22%), Positives = 174/396 (43%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + + R + ++ +PV + L+A D +K S + E++ + Sbjct: 1 MKFRIDRDALADAVAWTARSLPQRPPVPVLGGMHLEAGD---RLKLSAFDYEVSAQVTTD 57 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D G++ V LL DI R L + G++V + G + F L + P ++ Sbjct: 58 IDAEEPGTVLVPGRLLADISRALPP----HPVEVTADGSKVMLRCGSAKFTLPTMPVEDY 113 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E + S V + A ++ L G+ I+ E + L + TD Sbjct: 114 PSLPEMPPAAG-SVGSDEFAVAVNQVAIAAGKDDTIPMLTGVRVEIDGETVTLAS--TDR 170 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLN 231 +RLAV E+ + + +VP + + + + L+S + V+V+L E I + Sbjct: 171 YRLAVRELQWKPERPDFSAAALVPARTLADTAKSLTSG-AEVEVALGGAGSTGEGMIGFS 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+DG+F Y++++P V +AV RVS+++ R V+L+ S Sbjct: 230 GGGRRTTTRLLDGDFVKYRSLLPTEYAGMAEVQTGPFIEAVKRVSLVAE-RNTPVRLAFS 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ + D +A+E++ ++I FN+ +LL+ + I SD V RL Sbjct: 289 QGEVVLEAGTGDEAQAVEALEATLEGEDINIAFNHGFLLDGLSQIGSD-------VARLS 341 Query: 352 --SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + GK + + Y++MP+R+ Sbjct: 342 FTTPTKPAVLTGKPPEEGATPSYR----YLIMPVRL 373 >gi|306821800|ref|ZP_07455395.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550167|gb|EFM38163.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 396 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 87/387 (22%), Positives = 184/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + D+ + + + + KNT+ + + + +G L + + E+ I +IP Sbjct: 30 MKFKVNQRDLSKAISVVQKAVATKNTMEILKGIYFEIEEGNLLLTTNNMEVGIQTSIPCE 89 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I + A ++ DIVRKL D + EN+L + + +S F ++ +FP Sbjct: 90 VYEEGKIVIDAKIISDIVRKLPNDTIHFTSIDENDL---IEVRCQNSKFNIKYIRCEDFP 146 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++ + KN++ +T++A+++ + FF I++ K + D Sbjct: 147 MPAYIDERFFVKIEADDFKNMILKTNYAISSNDPNQIYMCHFFKIDKN--KFTMFSVDNF 204 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R + E + ++I+ + +I + + +K + + I + I+ ++ Sbjct: 205 RFVIMEKEFEDISFDEKNLIINGSILTDIAKTIEDGVEFIKFAFDDKHICVIIDDTIITS 264 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+ G F +Y+++IP + + V ++L+ A+DRVS++S+ ++ +KL + +T Sbjct: 265 NLVTGNFIDYESIIPRNEKSTVTVRSSDLKSAIDRVSLLSNNKL--IKLESKDFMMNITS 322 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSVF 358 N +G A E +++ +I FN ++LL+I+ N VDDE + ++ +S S Sbjct: 323 RNDQVGNANEIVDIKLEGENFEIAFNCEFLLDILKN------VDDEYITMKITNSLSPCK 376 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + N +V++P+RI Sbjct: 377 ITSESDE---------NYIHVILPVRI 394 >gi|260184855|ref|ZP_05762329.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CPHL_A] gi|289445527|ref|ZP_06435271.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CPHL_A] gi|289418485|gb|EFD15686.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CPHL_A] Length = 402 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 94/384 (24%), Positives = 170/384 (44%), Gaps = 35/384 (9%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + + +PV VLL +D L I E+ + A + GS+ VS LL DI R Sbjct: 33 LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138 L + + E G V ++ G++ F L + P ++P+ T EE + L + + Sbjct: 93 LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197 + + A ++ L GI I E + L ATD RLAV E+ A + + Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++VP K + E + S V++SL + + ++ + RL+D EFP ++ Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 ++P + ++ L +A+ V++++ R V++ + + ++ D+G+A E Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367 + V Y P+ I FN YL + + ++ S + V F ++ +R G D+ Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376 Query: 368 N-NKDNKVNA-----FYVLMPMRI 385 N D A Y+LMP+R+ Sbjct: 377 GLNGDGPFPAVSTDYVYLLMPVRL 400 >gi|167766863|ref|ZP_02438916.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1] gi|317499295|ref|ZP_07957568.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|167711411|gb|EDS21990.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1] gi|291558403|emb|CBL37203.1| DNA polymerase III, beta subunit [butyrate-producing bacterium SSC/2] gi|316893464|gb|EFV15673.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 367 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 78/343 (22%), Positives = 164/343 (47%), Gaps = 9/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD++ + + + T+P+ +L++A+ G +++ A+ E+ I I Sbjct: 1 MKIICTKSDLVHAVSIVSKAVSNNTTLPILKCILIEASTGNIKLTANDMELGIETTIDGQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +IVRKL D E + + I+ + F + EFPS Sbjct: 61 IHQPGKIAIEAKLFSEIVRKLPDN---DITIETDDQYKATITCEKACFQIMGQEGEEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S L+ LK ++ +T F+++ E + G F + +D +L V+ DGHR Sbjct: 118 LPEIEKNQSITLSQFSLKEVIRQTIFSISDNENTKLMTGELFEV--KDDQLSVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + EI++I+S + D +V + ++ I ++ + Sbjct: 176 ISIRHIELKDHYDPF-KVVVPGKTLQEIVKIISGEMDENVSIYVTSKHILFEFDNTRVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298 RL++GE+ ++ + ++ +N +DR S++ + + + ++ L + Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLNCIDRASLLIRESDKKPIIIDIADHSLKLN 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + N G E + + + I FN K+L++++ I +E+ Sbjct: 295 I-NSFFGSMEEEILIQKEGRDLLIGFNPKFLMDVLRVIDDEEI 336 >gi|119394192|gb|ABL74458.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|119394198|gb|ABL74461.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 195 Score = 97.4 bits (241), Expect = 3e-18, Method: Compositional matrix adjust. Identities = 58/204 (28%), Positives = 118/204 (57%), Gaps = 9/204 (4%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + +E L AVATDG+R+ + + I + S+I+PRK + E+ ++L+ Sbjct: 1 RYYLNGML--LKKEKTLLYAVATDGYRMGITKTSIQEDVIPF-SVIIPRKGIVELYKLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 K ++ + ++ I + IE L +++LI+G +P+Y +++ + + +N L+Q++ Sbjct: 58 IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTSILLKHKNCPIILNSQQLKQSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I++S +++ + ++K + DN + +A +S + Y ++I N Y+L+I+ Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEE-ERAEDSFKINYFNNEVEISINVYYILDIL 176 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + ISS + L+ SN+S+ Sbjct: 177 NVISS-----KNIFLFLNESNNSI 195 >gi|86609004|ref|YP_477766.1| DNA polymerase III subunit beta [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557546|gb|ABD02503.1| DNA polymerase III, beta subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 439 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 86/377 (22%), Positives = 174/377 (46%), Gaps = 38/377 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIPAS 60 T E++D+ L R + + +PV +VL++A+ + + ++ I A Sbjct: 30 FTCEQADLSHHLTSVGRAVASRPALPVLANVLVEADAETQRVALTAFDLNLCIRSEFEAQ 89 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G T+ A LL DIV +L G + + + V + + ++S E+P Sbjct: 90 VRGSGRTTLPAKLLSDIVSRLPSGPVTLDASSQAQESAPVILMSAAGQYQVRSMSAEEYP 149 Query: 120 S----------------TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163 + +E + EL L + +T FA + +E + L G+ Sbjct: 150 TLPEISLRTADADGDFVGEESPTAQALELPIESLLQGIGQTLFAASGDETKQVLTGVHVK 209 Query: 164 INEEDLK-LCAVATDGHRLAVAEVDIVA-QIAKMPSII-----VPRKAVGEILRILSSKD 216 + D L ATDGHRLA+ +V+ +A I +P + + E+ RIL ++ Sbjct: 210 LLAGDPPCLEFAATDGHRLAIVQVEAEGIPVASAHGEIGLDFTIPARTLREVERILGTQT 269 Query: 217 --SSVKVSLSESRIHLNIESLS--------MSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 S+V++ S++ + + ++ RL++G++P+Y +IP ++++ + Sbjct: 270 AASTVELRFDRSQVQFVLPPRASKTQCQQRITSRLLEGQYPDYNRLIPKQFERQVTLERR 329 Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 L ++++RV ++++ R VK +LS + L ++ + PD+G ES+ V + +++ F Sbjct: 330 PLIESLERVGVLAAQRNDIVKFNLSAATQTLRISTEAPDVGSGEESLPVQMSGPDLELAF 389 Query: 325 NYKYLLEIIDNISSDEV 341 N +YLL+ + + +V Sbjct: 390 NVRYLLDALRVFHTQQV 406 >gi|228908420|ref|ZP_04072263.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] gi|228851211|gb|EEM96022.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] Length = 271 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 18/273 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I+ +NE + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGL--HIVLSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRISSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 + ++ RLI+G++PN N+IP ND + +N Sbjct: 233 GTTTLYSRLIEGKYPNISNLIP--NDFKTIINV 263 >gi|116326857|ref|YP_796577.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329804|ref|YP_799522.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119601|gb|ABJ77644.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123493|gb|ABJ74764.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 373 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 100/401 (24%), Positives = 192/401 (47%), Gaps = 44/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V SD L+ + +I + + ++ ++A + + + A+ EI I ++ A Sbjct: 1 MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLSAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF-YLQSFP----- 114 V GSI++ A L + + F+E L E S GDS+ Y+ Sbjct: 61 VIQAGSISLPAKQLSSFFKTIH-------FEETILSLEE--SDGDSSIVYITDASGKNDY 111 Query: 115 ESEFPSTKEEE----------YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164 +S+ EE + SF S+++ +++ +T +A+A E+ R+ NG++ + Sbjct: 112 KSKISGMDAEEIKTISKVSPSQISSF--PSNLINDMIRKTSYAIAHEDQRFIFNGLY--M 167 Query: 165 NEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS 224 + KL V TDG RL E + + + SIIVP KAV EI +++++ ++ + L Sbjct: 168 IPDGNKLTFVGTDGRRLCKIERTLPSPLQFKDSIIVPAKAVREISKMIATSETG-NLGLI 226 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 +S+I+ + ++ + +LI+G FPNY+ VIP S + ++ + ++ +V + + Sbjct: 227 DSQIYASANNIELLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSR 286 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 VKL+ S + L + +A + + Y+ + I F +YL++I +I +E+ Sbjct: 287 QVKLTFSKNNLNLFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSIDDNEI--- 343 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ F DSS+ +F D + V+MPM++ Sbjct: 344 KIEFS-DSSSPVIFKDPSDPE----------FISVIMPMKL 373 >gi|183602669|ref|ZP_02964033.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219682501|ref|YP_002468884.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis AD011] gi|241190068|ref|YP_002967462.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195474|ref|YP_002969029.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218087|gb|EDT88734.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219620151|gb|ACL28308.1| DNA polymerase III, beta subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248460|gb|ACS45400.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250028|gb|ACS46967.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793055|gb|ADG32590.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis V9] Length = 374 Score = 97.1 bits (240), Expect = 4e-18, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + +I+ + P+ V L+A DG +++ A EI I A Sbjct: 1 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L A+ ++ NE T + I+ G + F LQ PESE+P Sbjct: 61 VDESGTVVVLGKLLADISKVLP--AEKTYLSANE--TTMTITSGPATFTLQLMPESEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A+A +E R L G+ E++ L +TD R Sbjct: 117 LPQLPPQIG-QVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHL----NIES 234 L A A + + + R + +++I S D ++V + L + L N Sbjct: 174 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +S +V+LIDGEFP + S + + +L A RVS+++ R +++ + + Sbjct: 232 IS-TVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVAE-RNAPIRMVFTDQQ 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T D A E++ + + + + FN YL E + IS + + ++ ++ Sbjct: 290 LTLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAV 344 Query: 355 SSVFIRG-KDKDSKNNKDNKVNAFYVLMPMR 384 V G +D+D + + + Y+L+PMR Sbjct: 345 KPVEFNGQQDEDGEESMSYR----YLLVPMR 371 >gi|15671984|ref|NP_266158.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis Il1403] gi|281490500|ref|YP_003352480.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis KF147] gi|18202807|sp|Q9CJJ1|DPO3B_LACLA RecName: Full=DNA polymerase III subunit beta gi|12722837|gb|AAK04100.1|AE006239_2 DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis Il1403] gi|281374318|gb|ADA63851.1| DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis KF147] gi|326405599|gb|ADZ62670.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis CV56] Length = 380 Score = 97.1 bits (240), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 82/342 (23%), Positives = 165/342 (48%), Gaps = 22/342 (6%) Query: 16 HACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVC 64 +A RI ++ K TIP + ++ + + + S +I I +P + Sbjct: 13 NALRITKQAIGSKVTIPALTKLKIEVEENGITLIGSNGQISIKNFLPVDNKDASMLISGT 72 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 GS+ + A ++V +L + + F ++ + +V ++ G S L+ +P +E Sbjct: 73 GSVLLEAAFFENVVSQLPE-VTLEFTEKEQ--KQVLLTSGKSEITLKGLDSEIYPHLQEI 129 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDGHRLAV 183 S ++ VLK + T FA++T+E R G+ ++ +LK AVATD HR++ Sbjct: 130 SEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELK--AVATDSHRMSQ 187 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + + K +I+P K++ + ++ + +++ +S S++ E++S RLI+ Sbjct: 188 RLLPLEDSELKF-DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFRNETISYYSRLIE 246 Query: 244 GEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTVD 300 G +P+ +IP D L + + LR +DR +++ + VKL++S D + T + Sbjct: 247 GSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSVVTTAN 306 Query: 301 NPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341 +P++G E + E + I FN +YL++ + I + EV Sbjct: 307 SPEVGSVHEELTALSKEGNDLAISFNPEYLIDALKVIKAPEV 348 >gi|239930174|ref|ZP_04687127.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] gi|291438516|ref|ZP_06577906.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672] gi|291341411|gb|EFE68367.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672] Length = 376 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + V++ A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPNATG-TVPGEVFSSAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + ++ +VP K + + + L+S D V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-QVILALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374 >gi|317472419|ref|ZP_07931744.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900139|gb|EFV22128.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 367 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 88/386 (22%), Positives = 183/386 (47%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD++ + + + K T+P+ +L++A+ G + + A+ E+ I I + Sbjct: 1 MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L ++IVRKL D E + + I+ + F++ SEFP Sbjct: 61 ILEQGKIALDAKLFFEIVRKLPDN---DVTIETDSDYKATITCEKACFHIVGQEGSEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S L+ LK ++ +T F+++ E + G F ED KL V+ DGHR Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFE--AEDKKLNVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + EI +I+S + V + ++ I + + Sbjct: 176 ISIRNIELKESYDSF-KVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298 RL++GE+ ++ + ++ +N +DR S++ + + ++++ + L ++ Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357 + + G E++ + + I FN K+L++++ V+DDE + L + + Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVL------RVIDDEEINIYLVNPKAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FI KD+ + Y+++P+ Sbjct: 348 FI----------KDDSESYIYLILPV 363 >gi|289177771|gb|ADC85017.1| DNA polymerase III, beta chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 395 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + +I+ + P+ V L+A DG +++ A EI I A Sbjct: 22 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 81 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L A+ ++ NE T + I+ G + F LQ PESE+P Sbjct: 82 VDESGTVVVLGKLLADISKVLP--AEKTYLSANE--TTMTITSGPATFTLQLMPESEYPD 137 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A+A +E R L G+ E++ L +TD R Sbjct: 138 LPQLPPQIG-QVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 194 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHL----NIES 234 L A A + + + R + +++I S D ++V + L + L N Sbjct: 195 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 252 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +S +V+LIDGEFP + S + + +L A RVS+++ R +++ + + Sbjct: 253 IS-TVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVAE-RNAPIRMVFTDQQ 310 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T D A E++ + + + + FN YL E + IS + + ++ ++ Sbjct: 311 LTLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAV 365 Query: 355 SSVFIRG-KDKDSKNNKDNKVNAFYVLMPMR 384 V G +D+D + + + Y+L+PMR Sbjct: 366 KPVEFNGQQDEDGEESMSYR----YLLVPMR 392 >gi|240172092|ref|ZP_04750751.1| DNA polymerase III subunit beta [Mycobacterium kansasii ATCC 12478] Length = 399 Score = 96.7 bits (239), Expect = 5e-18, Method: Compositional matrix adjust. Identities = 93/403 (23%), Positives = 180/403 (44%), Gaps = 36/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + + E + + + + +PV VLL +D L I SG + E++ + + Sbjct: 13 LKFRLVKESFAEAVSWVAKNLPTRPAVPVLSGVLLTGSDDGLTI--SGFDYEVSAEVQVA 70 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ GS+ VS LL DI R L + + F+ + G V ++ G++ F L + ++ Sbjct: 71 AEIASPGSVLVSGRLLSDITRALPN-KPVDFYVD---GNRVALTCGNARFSLPTMAVEDY 126 Query: 119 PS--TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P+ T ++ + L S + + + A ++ L GI I + L AT Sbjct: 127 PTLPTLPDD---TGTLPSDLFAEAISQVAIAAGRDDTLPMLTGIRVEIAGHTVVLA--AT 181 Query: 177 DGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRI 228 D RLAV E+ A + S++VP K + E + +S S V++SL + + Sbjct: 182 DRFRLAVRELTWTALSPDIEASVLVPAKTLAEAAKA-NSDGSDVRLSLGAGTGVGKDGLL 240 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ + RL+D EFP ++ ++P + + L +A+ V++++ R V++ Sbjct: 241 GISGNGKRSTTRLLDAEFPKFRQLLPVEHTAVATADVAELTEAIKLVALVAD-RGAQVRM 299 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F Sbjct: 300 EFAEGTLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSLHS-----ERVSF 354 Query: 349 RLDSSNSSVFIR-GKDKDSKNNKDNKVNA-----FYVLMPMRI 385 + +R +D+ A Y+LMP+R+ Sbjct: 355 GFTTPGKPALLRPASAEDATPTGSGPFAAVPTDYVYLLMPVRL 397 >gi|229097210|ref|ZP_04228172.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29] gi|228686021|gb|EEL39937.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29] Length = 376 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS + I IP S Sbjct: 1 MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I +NE + I + L Sbjct: 61 IEDEQIATILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QIITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P +EFP+ ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLV 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + AK + IVP + E+L++++S V + LS+S + Sbjct: 175 CAATDSHRLAIRETPISSD-AKA-NCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + ++ RLI+G++PN N+IP + V + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ V E ++I F+ +++++ + I+ + V Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAITEEMV 345 >gi|119355859|ref|YP_910503.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM 266] gi|119353208|gb|ABL64079.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM 266] Length = 376 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 96/391 (24%), Positives = 184/391 (47%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T + + + + I K P ++ L G L + AS E+ IT S Sbjct: 3 MKFTAPIRLLQDAVNRVSQAIPSKAIDPRFENIHLAIEPGKLTLFASDGEMSITAKSEIS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE----LGTEVNISHGDSNFYLQSFPES 116 + G+I++ A L D +R + D +++F E + GT V+IS + + F ES Sbjct: 63 SEDTGNISIKARTLQDFLRSMYD-TEVTFSIERQEISDHGT-VSISTDKGKYKIPCFFES 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + E+ YV + +L S L+ L+++T FA + + +R + G+ F + E + AV+T Sbjct: 121 KM-EIYEKNYVINLDLPSVELQYLIQKTIFACSVDGMRPAMMGVLFEL--ESSSITAVST 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRL V ++ I+V + + + ++ + +++ + + ++ Sbjct: 178 DGHRLVRCRKSTVIEVEDKQKIVVSARVLSILQKLPLHETVIIQIDQDKRFVRFTQNNVV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + LI +PNY+ VIP +DK++ + +N+ +V RV SSV +K+ L+ + Sbjct: 238 IDASLIVEPYPNYEAVIPVIHDKQVSCDRSNIYDSVKRVGRFSSV--GDIKMVLADSIIK 295 Query: 297 MTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +N + G+ A E + Y + I FN K++ + +I + E++ L S + Sbjct: 296 VMAENTNEGESAQEELPCSYTGEDITIGFNAKFIEAALAHID-----EKEIIIELKSPTT 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVL-MPMRI 385 +V K ++ + + +L MP+RI Sbjct: 351 AVIF-------KPVQEKETGSLIILVMPVRI 374 >gi|328883702|emb|CCA56941.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC 10712] Length = 376 Score = 96.7 bits (239), Expect = 6e-18, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 173/396 (43%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ E + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPEMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPESPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGKGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374 >gi|257065522|ref|YP_003151778.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548] gi|256797402|gb|ACV28057.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548] Length = 370 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 87/338 (25%), Positives = 168/338 (49%), Gaps = 21/338 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + D++ + A + + + I + + + + L ++A EI I + A Sbjct: 1 MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP-----E 115 VD G + V A L+ +IVRKL + I EN+ G S+F L +F + Sbjct: 61 VDEEGEMAVKASLISNIVRKLPNDIVII---ENKNGKISIKCSS-SSFNLIAFDYYDKND 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 P TK E+A+ +LK + +T FA + +E + L GI F + E + + VA Sbjct: 117 INIPETK------PIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNM--VA 168 Query: 176 TDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DG+R+++ ++ + S I+P++++ E RI+S D + K+ +E+ + S Sbjct: 169 LDGYRVSLKKIKLDYPTDYEDSEYIIPKRSLLEWSRIVSD-DLTTKLYKNENDLIFTSGS 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 +M ++ID F +Y+N+I ++ + ++ +L ++DR ++S R +K+ L SD Sbjct: 228 TTMQCKVIDKNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIEL-SD 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 + + N ++G E+++V ++I FN +Y+ E Sbjct: 287 NVMLIKSNSEIGDVREAIDVEQKGNDLEIAFNARYMQE 324 >gi|294790225|ref|ZP_06755383.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304] gi|294458122|gb|EFG26475.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304] Length = 374 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 97/393 (24%), Positives = 183/393 (46%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ S E + R+I + P+ V L+A DGLL++ A E+ I A Sbjct: 1 MKVEIDSSAFSEAVSWTTRVIPARPATPILTGVKLEAADGLLQLSAFDYEVSARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G V LL DI + L G + G ++ +S G S F L P+S++P Sbjct: 61 VDESGLAVVQGKLLADIGKALPVGK----IYLSTSGAKLTVSGGQSTFSLPLMPQSDYPE 116 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + S + + + V + A++ EE R L G+ + D K+ +TD Sbjct: 117 LPQIPDALGSVD--ADTFAHAVAQATVAISREESRPVLTGVKMIFS--DGKVQMTSTDRF 172 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL-----SESRIHLNIE 233 RL+ + + + ++ R G +LR + S D+S V + S + + + Sbjct: 173 RLSRSTFAWSPSADDIDTSLLVR---GTLLRDVARSLDTSQNVVVGFNPDSPTLVGFDNA 229 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +LIDGEFP+ + + ++ L A+ RVS+++ R +++S ++ Sbjct: 230 GKISTAQLIDGEFPSVDRLFAADYPIHVVLDKNALIDAIRRVSLVAE-RNAPIRMSFENN 288 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ ++ + D +A E+++V + P+ I FN YL+E + V + V ++ S Sbjct: 289 QVTLSAGSADESQAKETLSVDMDGDPITIAFNPAYLVEGL-----SAVYEPYVRMKMISP 343 Query: 354 NSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 +V G +D+D + + D + Y+L+P+R Sbjct: 344 TKAVEFNGQQDQDGEESLDYR----YLLVPVRF 372 >gi|229816998|ref|ZP_04447280.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM 20098] gi|229785743|gb|EEP21857.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM 20098] Length = 374 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 96/391 (24%), Positives = 178/391 (45%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + + P+ + L+A DG L + A EI I A Sbjct: 1 MKVEVNSGALADAVAWTTRVIDARPSNPILAGIRLEAADGALRLSAFNYEISARDHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI V LL DI + L ++ ++ N T + I+ G S F +Q P +E+P Sbjct: 61 VDESGSILVLGKLLADITKSLP--SEKTYLSANS--TTLTITSGKSTFTMQLMPNAEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A++ EE R L G+ + + K+ +TD R Sbjct: 117 LPSMPGMLG-QVDAPTFIQAVSQACVAVSREENRPVLTGVRMQFDGD--KVVLTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-----SESRIHLNIES 234 LA A Q + + + R G +LR +S S + ++L + S + + Sbjct: 174 LARATFSWSPQDPTVHTTTLVR---GSLLRDVSRSLNERQNLTLDFDTENPSLLGFDNAG 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 S + +LIDGEFP + + ++ +L A+ RV++++ R +++ S + Sbjct: 231 RSSTSQLIDGEFPAVDRLFADDYPIQAVIDKQSLIGAIKRVALVAE-RDAPIRMVFSGQE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D +A E ++V + + + FN YL+E + IS + V +L ++ Sbjct: 290 LTLSAGAVDEAQAKEIIDVDMDGDDITVAFNPSYLIEGLSAIS-----EPYVRMKLTTAV 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V G+ + + D ++ Y+L+PMR Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372 >gi|31791179|ref|NP_853672.1| DNA polymerase III subunit beta [Mycobacterium bovis AF2122/97] gi|121635885|ref|YP_976108.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635912|ref|YP_976135.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988385|ref|YP_002643052.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|32700067|sp|O33914|DPO3B_MYCBO RecName: Full=DNA polymerase III subunit beta gi|31616764|emb|CAD92864.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium bovis AF2122/97] gi|121491532|emb|CAL69986.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491559|emb|CAL70016.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771498|dbj|BAH24304.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo 172] Length = 402 Score = 96.3 bits (238), Expect = 7e-18, Method: Compositional matrix adjust. Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 35/384 (9%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + + +PV VLL +D L I E+ + A + GS+ VS LL DI R Sbjct: 33 LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138 L + + E G V ++ G++ F L + P ++P+ T EE + L + + Sbjct: 93 LPN-KPVGVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197 + + A ++ L GI I E + L ATD RLAV E+ A + + Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++VP K + E + S V++SL + + ++ + RL+D EFP ++ Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 ++P + ++ L +A+ V++++ R V++ + + ++ D+G+A E Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367 + V Y P+ I FN YL + + ++ S + V F ++ +R G D+ Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376 Query: 368 NNKDN------KVNAFYVLMPMRI 385 N + Y+LMP+R+ Sbjct: 377 GLNGNGPFPAVSTDYVYLLMPVRL 400 >gi|182437494|ref|YP_001825213.1| DNA polymerase III subunit beta [Streptomyces griseus subsp. griseus NBRC 13350] gi|239942669|ref|ZP_04694606.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|239989128|ref|ZP_04709792.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 11379] gi|291446130|ref|ZP_06585520.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|326778149|ref|ZP_08237414.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] gi|178466010|dbj|BAG20530.1| putative DNA polymerase III beta subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|291349077|gb|EFE75981.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|326658482|gb|EGE43328.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] Length = 376 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 +D G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 IDEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + A ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENADASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ + K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374 >gi|152991599|ref|YP_001357320.1| DNA polymerase III subunit beta [Sulfurovum sp. NBC37-1] gi|151423460|dbj|BAF70963.1| DNA polymerase III, beta subunit [Sulfurovum sp. NBC37-1] Length = 355 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 95/351 (27%), Positives = 176/351 (50%), Gaps = 31/351 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE---ITGAI 57 MKI ++ I +L + +E+K+ ++ H+L + + +KA+ EI +T I Sbjct: 1 MKIRAQKQIIESILINLQPFLEKKDASQITSHILFSSQNDKCIVKATDSEIGLQIVTDHI 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PES 116 ++ GS T + L DI+R L+D I +N L + S F L +F P + Sbjct: 61 --LIESEGSFTANGKKLLDIIRILKDDEIIMEILDNTLI----VKQKHSKFKLPTFDPNA 114 Query: 117 --EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 FPS E+ + L S+++NL ++ A+ T ++ LNG +I + L V Sbjct: 115 YPAFPSVDEKPQITLDSL--SLIQNL-KKISPAIDTNNPKFELNGALINIKHDSTDL--V 169 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD RLA+A I ++ S+IVP+KA+ EI ++ + + + E+ + + E+ Sbjct: 170 GTDTRRLAIAS--IPGNNSEELSLIVPKKAILEIQKLFLDQ---INIYYDETNLIITNEN 224 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 RLI+G+FP+YQ +IP S + + ++ +D + +++++ Q +K++L SD Sbjct: 225 YFFYTRLINGKFPDYQRIIPASVKHSITLPK---KEMIDSIKMITTIS-QEIKMTLLSDA 280 Query: 295 L---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ DN + IE + NE ++ FN +Y+L+ I I +E + Sbjct: 281 IIFNSLSADNVEAKTEIE-IGTGLNEK-YELSFNSRYILDFISQIDKNEFL 329 >gi|332638151|ref|ZP_08417014.1| DNA-directed DNA polymerase III, beta chain [Weissella cibaria KACC 11862] Length = 376 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 81/358 (22%), Positives = 171/358 (47%), Gaps = 31/358 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ ++ + + R I + ++P+ V L ++ L + S +I I IP + Sbjct: 1 MQFTINRAVFIKAMNNVSRAISSRTSMPILTGVKLVLDNNGLTLTGSDTDISIETVIPVT 60 Query: 61 VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 D G++ + A +IV++L +F N G + I+ +S F + Sbjct: 61 DDQATLQVSEPGALVLPAAFFSNIVKRLPGE---TFTLSNTTGFQAKITSENSEFDINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E + L + L ++ +T A++ + + L G+ F + +L A Sbjct: 118 DANNYPHLPEIEVRNNLTLPAETLTEVIGQTVIAVSKQLSQPILTGVHFILAGGNL--TA 175 Query: 174 VATDGHRLA-----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 VATD HRLA + D+ A IIVP ++ ++ +L ++ V V ++E+++ Sbjct: 176 VATDRHRLAQRTVAFGDSDVSA------DIIVPGPSLNQLQAMLDEVET-VDVRVAENQV 228 Query: 229 HLNIES-LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + + + RL++G +P+ +IP L +N +L Q ++R +++S R + Sbjct: 229 IFQLGANTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVI 288 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341 + ++S +K ++ ++P++G+ E ++ E D I FN Y+ E + + +++ Sbjct: 289 QFTVSDEKSLISSNSPEVGRVEE--QIFAAETAGDELTISFNPDYMREALKSFGDEQI 344 >gi|258650273|ref|YP_003199429.1| DNA polymerase III subunit beta [Nakamurella multipartita DSM 44233] gi|258553498|gb|ACV76440.1| DNA polymerase III, beta subunit [Nakamurella multipartita DSM 44233] Length = 408 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 28/357 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK V R D+ + + + + + +PV +LL+ + L + E+ + Sbjct: 1 MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60 Query: 58 ------------PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105 PA D + VS LL +I R L LG +V+I G Sbjct: 61 TLDELEPDAPGGPAGTD---RVLVSGRLLAEITRSLP----AKPVDLAVLGPKVSIVAGS 113 Query: 106 SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 + F L + P ++P + S + S+ V +T A ++ L GI I+ Sbjct: 114 ARFTLPTMPVEDYPPLPQMPAA-SGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEID 172 Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS 224 + L L A TD RLAV E+ + + ++VP + + + + L V V+L Sbjct: 173 GDRLTLAA--TDRFRLAVRELGWHPDQENLSTAVLVPARTLADAAKTLGGA-KQVTVALG 229 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 E + L+ +VRL+D EF Y++++P S+ + V L +++ RV++++ R Sbjct: 230 EGLLGLDAGDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVTD-RGH 288 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++L + L +T D G+A E + + + I FN YLL+ + + +D V Sbjct: 289 HLRLQVGEGALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHADTV 345 >gi|297622254|ref|YP_003703688.1| DNA polymerase III subunit beta [Truepera radiovictrix DSM 17093] gi|297163434|gb|ADI13145.1| DNA polymerase III, beta subunit [Truepera radiovictrix DSM 17093] Length = 363 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 26/348 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIP 58 M + V R + E+L H RI+ +++ P + L+ +DG L + S ++++ T A+ Sbjct: 1 MNVEVPRKALGEVLAHLERIVPSRSSNPSLSLLRLELSDGHLTLSGSNLDLDLQATLAVS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ----SFP 114 +S + G + AH+ + R L G + E+ E+ + G LQ P Sbjct: 61 SSGERGGPWALPAHVFGQVARALP-GELVELTFES---AELEVRSGSYATKLQLMTTDLP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + FP+ + ++ L + +A A E + G+ ++ D + AV Sbjct: 117 DLVFPNDLPGRF------SAERLGAALSHVRYAAAVAEYQAIFRGVKLELH--DGRTRAV 168 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG RLA + +A+ I++P ++ E++++L D K+ LSE ++ L Sbjct: 169 ATDGFRLAYYHLGASTGLAQ--DIVIPARSADELVKLLG--DGETKLGLSEGQLSLETGP 224 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293 ++V+L++G FP+Y+ VIP + + L + V RV++M+ V L + Sbjct: 225 YRLNVKLMEGTFPDYERVIPSHFPVSITLAARTLLEGVQRVAVMADRTANNRVDLFVRDG 284 Query: 294 KLCMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSD 339 L +T + G+A E++ V +E + + +N YLL + + D Sbjct: 285 TLQITAEG-AYGRAQEALAVAQEGSESEIALAYNADYLLSALRPVGGD 331 >gi|160878164|ref|YP_001557132.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg] gi|160426830|gb|ABX40393.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg] Length = 370 Score = 96.3 bits (238), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 84/372 (22%), Positives = 182/372 (48%), Gaps = 26/372 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++++L + A + + K+T+P+ ++++ + +++ ++ EI I + S Sbjct: 1 MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIETIVKGS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSFP 114 + GS+ ++A + +I+RKL D NE+ E + I+ + F + Sbjct: 61 IISNGSVAINAKVFSEIIRKLPD---------NEVNVETDEKFMTTITCEKAKFTIAGKS 111 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP E + EL+ LK ++ +T F+++ E + G F IN +L++ V Sbjct: 112 AEEFPMLPTIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRV--V 169 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIE 233 + DGHR+++ +V++ A I+VP K + E+ +ILS + S V + ++ + + Sbjct: 170 SLDGHRISIRKVELKNSYAP-KKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFD 228 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSS 292 + RLI+GE+ ++ + ++++N +DR +++ + + + + Sbjct: 229 DTLVLSRLIEGEYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIED 288 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 KL + + N +G E +++ + I FN K+L++ + I D+EV L + Sbjct: 289 KKLELKI-NTSIGTMDEDIDIEKEGKDILIGFNPKFLIDALRVID-----DEEVEIYLIN 342 Query: 353 SNSSVFIRGKDK 364 + FI+ K++ Sbjct: 343 PKAPCFIKDKEE 354 >gi|229103294|ref|ZP_04233977.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28] gi|228680133|gb|EEL34327.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28] Length = 376 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 20/353 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS + I IP S Sbjct: 1 MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ + I +NE + I + L Sbjct: 61 IEDEQIATILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QIITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P +EFP+ ++ + L + ++T FA+A E R L G+ HI + KL Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLV 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E +V+ AK + IVP + E+L++++S V + LS+S + Sbjct: 175 CAATDSHRLAIRET-LVSSDAKA-NCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291 + + RLI+G++PN N+IP + V + Q VDR S+++S V L + Sbjct: 233 GTTTFYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 ++ N +GK E+ V E ++I F+ +++++ + I+ + V Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAITEEMV 345 >gi|302870734|ref|YP_003839370.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573593|gb|ADL41384.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis OB47] Length = 368 Score = 95.9 bits (237), Expect = 8e-18, Method: Compositional matrix adjust. Identities = 92/357 (25%), Positives = 170/357 (47%), Gaps = 27/357 (7%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 VL++A D ++ + ++++ A + G+ V A L DIV+KL DG +E Sbjct: 33 VLIEAEDSII-FTTNDMKMQMQTEFKAEILQRGAALVKAKLFSDIVKKLPDGDVEVIREE 91 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 NE V I F L + +FP +++ E +S ++ +++ FA + +E Sbjct: 92 NE----VKIRSQKIEFRLPTLDPLDFPKMEKKPSESFCEFVASEFEDAIDKVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F EED + V DGHRLA+ ++ V ++ S IVP + +I +I+ Sbjct: 148 TRPTFTGVLFE-REEDEFVNLVGMDGHRLAICKIKPV-EVDGNFSKIVPADNLDDITKII 205 Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 +++ V+VS E++ I S ++ V LI G+F +Y++ IP ++ ++ L Sbjct: 206 DIEEAEKVRVSFYENQATFEIGSTTVIVTLISGKFFDYKSAIPTEYSTKISISADVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 ++R SI+S IQAV + + + D G+ E + + I FN KY Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMMFTVRSMSAD-GRFEEDVLCSVEGKDIRIGFNVKY 324 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+++ +V+D E+ ++FI + S K + N Y+++P+++ Sbjct: 325 FLDVL------KVLDGEI---------NLFITSQTSPSIVQKPDDENYIYLVLPIKM 366 >gi|23335940|ref|ZP_00121171.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bifidobacterium longum DJO10A] gi|23465221|ref|NP_695824.1| DNA polymerase III subunit beta [Bifidobacterium longum NCC2705] gi|189440297|ref|YP_001955378.1| DNA polymerase III subunit beta [Bifidobacterium longum DJO10A] gi|227547510|ref|ZP_03977559.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622841|ref|ZP_04665872.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453189|ref|YP_003660332.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. longum JDM301] gi|312133631|ref|YP_004000970.1| dnan [Bifidobacterium longum subsp. longum BBMN68] gi|317482360|ref|ZP_07941380.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|322688193|ref|YP_004207927.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. infantis 157F] gi|322690195|ref|YP_004219765.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|23325849|gb|AAN24460.1| DNA polymerase III, beta chain [Bifidobacterium longum NCC2705] gi|189428732|gb|ACD98880.1| DNA polymerase sliding clamp subunit [Bifidobacterium longum DJO10A] gi|227212025|gb|EEI79921.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514838|gb|EEQ54705.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517732|emb|CBK71348.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. longum F8] gi|296182620|gb|ADG99501.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. longum JDM301] gi|311772889|gb|ADQ02377.1| DnaN [Bifidobacterium longum subsp. longum BBMN68] gi|316916240|gb|EFV37642.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|320455051|dbj|BAJ65673.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320459529|dbj|BAJ70149.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 374 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 91/391 (23%), Positives = 181/391 (46%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + + P+ V L+A DG L+ A EI I A Sbjct: 1 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L+ ++ ++ + G+ + I+ G S F LQ P++E+P Sbjct: 61 VDEAGSVLVQGKLLADITKSLR--SEKTYLVTD--GSTLTITSGKSKFTLQLMPDTEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A++ EE R L G+ + K+ +TD R Sbjct: 117 LPVVPAMLG-QVDAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIESLS 236 LA A Q + + + R G +L+ + + D + L ++S L E+ Sbjct: 174 LARATFTWTPQNPDVDTTTLVR---GSLLKDVARALDEHQNIRLDFDADSPTLLGFENAG 230 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + + VN +L A+ RV++++ R ++++ + + Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAE-RNAPIRMTFTGQE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ + D +A E++++ + + + FN YL E + V + V ++ + Sbjct: 290 VALSAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGL-----SAVTEPFVRIKMTTPV 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V G+ + + D ++ Y+L+PMR Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372 >gi|311897308|dbj|BAJ29716.1| putative DNA polymerase III subunit beta [Kitasatospora setae KM-6054] Length = 376 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 35/354 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + A R + + +PV +LL A +G L + SG + E++ + Sbjct: 1 MKFRVERDVLAEAVAWAARSLPARPPVPVLAGLLLTAQEGSLAL--SGFDYEVSARVELE 58 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115 DV G++ VS LL DI R L + + E+ G V++ G S F L + P Sbjct: 59 ADVEEAGTVLVSGRLLNDISRNLPN-------RPVEISTDGARVSVVCGSSRFTLPTLPV 111 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P+ + + V + V + A ++ L G+ IN + L A Sbjct: 112 DEYPALPQMPTATG-TVPGDVFASAVSQAAVAAGRDDTLPVLTGVRVEINGSGITLA--A 168 Query: 176 TDGHRLAVAEV------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS----- 224 TD +R AV E+ D + +A +VP K + +I + L S D V ++LS Sbjct: 169 TDRYRFAVRELLWKPEQDDINAVA-----LVPAKTLQDIAKSLGSGD-QVTIALSAGGAG 222 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 E I + RL++GEFP ++++ P V +A+ RVS+++ R Sbjct: 223 EGLIGFEGAGRRTTTRLLEGEFPKFRSIFPTEFSAVAAVQTQPFLEALKRVSLVAE-RNT 281 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 V+L+ L + + D +A E ++ + I FN YL E + I + Sbjct: 282 PVRLNFEQGVLTLEAGSGDDAQATERVDADLEGDDISIAFNPGYLEEGLKAIDA 335 >gi|307331908|ref|ZP_07611004.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu 4113] gi|306882426|gb|EFN13516.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu 4113] Length = 376 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + +PV +L++A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILMKAEEGALSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 ++ G++ VS LL DI R L + + E+ G V + G S F L + P E Sbjct: 61 IEDDGTVLVSGRLLADICRALPN-------RPVEISSDGVRVTVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P T + + + V + A ++ L G+ I + + L +TD Sbjct: 114 YP-TLPQMPTATGTVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+L+ Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETPPFVEAVKRVALVAE-RNTPVRLTFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAMDAEADEAYK----YLIMPVRL 374 >gi|296268000|ref|YP_003650632.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833] gi|296090787|gb|ADG86739.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833] Length = 378 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 181/396 (45%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R + E + R + + ++PV + L+ D +K SG + E++ + Sbjct: 1 MLFRIDRDQLAEAVAWTARSLPTRPSMPVLAGMRLEVTDDH-RLKLSGFDYEVSAEVTLD 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ G + VS LL +I R L AQ F + G + ++ G + F L + P ++ Sbjct: 60 LETGEPGVVLVSGRLLAEITRALP--AQPVNFTLD--GAKAVVTCGSTRFTLLTMPVEDY 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS + S V + V + A+ ++ L G+ I E DL A ATD Sbjct: 116 PSLPVMPPAAG-RVGSDVFASAVAQVAVAVGKDDTLPMLTGVRMEI-EGDLITLA-ATDR 172 Query: 179 HRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV E+ AQ ++P + + +I + L + V+++LS E I + Sbjct: 173 YRLAVRELKWEPAQPGLQAVAMIPGRTLADIAKALGGTGAEVEIALSSGGTGEGMIGFSS 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+D EFP Y++++P V + +AV RV++++ R V+L+ Sbjct: 233 AGRRTTTRLLDPEFPKYRSLLPTEFSARADVATSAFVEAVKRVALVAE-RNTPVRLTFRG 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD- 351 ++ + + D +A+E + V + + I FN++YLL+ + + SD V R+ Sbjct: 292 GEVVLEAGSGDEAQAVEVLPVDFEGDEITIAFNHQYLLDGLAVLDSD-------VARMQF 344 Query: 352 --SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ GK + D + Y++MP+R+ Sbjct: 345 TTPTKPAIITAGKPAGEEAASDYR----YLIMPIRL 376 >gi|158311870|ref|YP_001504378.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] gi|158107275|gb|ABW09472.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] Length = 386 Score = 95.9 bits (237), Expect = 9e-18, Method: Compositional matrix adjust. Identities = 93/399 (23%), Positives = 178/399 (44%), Gaps = 29/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 M+ VER + + + R + + T + V +LL A L++ A E+ G + Sbjct: 1 MRFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGELD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ +L DI R L A + + GT + ++ G++ F L P ++ Sbjct: 61 ATVTEEGRGLVNGKMLADITRSLP-AAPVDVHVD---GTRLVVACGNARFALPMLPVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + + V + A ++ L G+ I+ + L L A TD Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTLAA--TDR 173 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV + + +VP + + + + LS V V+L E+ Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGSGVEVAVALGTGPSGETLAGFAG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL++G FP Y+ ++P S+ ++ L +AV RV+++++ R V+L+ + Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVAA-RTAPVQLTFTP 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF---- 348 D L + +A E++ V Y+ + + FN YLL+ + + SD V + F Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPAYLLDALGALESDIV---RIGFASAE 349 Query: 349 -RLDSSNSSVFIRGKDKDSKNN-KDNKVNAFYVLMPMRI 385 +++ + GK D + D + Y+LMP+R+ Sbjct: 350 DAALAASKPAILTGKGGDDQTEIPDYR----YLLMPIRL 384 >gi|167759578|ref|ZP_02431705.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704] gi|167662805|gb|EDS06935.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704] Length = 402 Score = 95.9 bits (237), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 89/384 (23%), Positives = 185/384 (48%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 34 MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEIEGQ 93 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D +++ ++ L T + + F + P EF Sbjct: 94 ITERGMIAIDARIFSEIVRKLPDN-EVTIETDSNLQTVITCEK--AKFDIAGKPGEEFSY 150 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S E++ LK ++ +T F++A E + G F I + L++ ++ DGHR Sbjct: 151 LPIIEKEESIEISQFTLKEIIRQTIFSIADTESNKLMTGELFEIKDNILRV--ISLDGHR 208 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ Q+ +IVP K + E+ +ILS + +S V +S + + I ++ + Sbjct: 209 ISIRKIELKDQVTD-KKLIVPGKTLIEVSKILSGEIESMVNISYTNNHIVFEFDNTIVVS 267 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+GE+ ++ + ++R+N L +DR +++ + + D+L Sbjct: 268 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMELK 327 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +G E + + + I FN K+L++ + I D+EV L ++ + FI Sbjct: 328 IKSQVGSMNEEIYISKEGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCFI 382 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 KD++ N Y+++P+ Sbjct: 383 ----------KDDEENYIYLILPV 396 >gi|116490128|ref|YP_809649.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1] gi|290889522|ref|ZP_06552612.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429] gi|116090853|gb|ABJ56007.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1] gi|290480720|gb|EFD89354.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429] Length = 374 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/351 (23%), Positives = 169/351 (48%), Gaps = 30/351 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V+R+++ L R I K IP+ + + ++ + + S EI I + A Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 VDV-------CGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQS 112 D G I +A+ +I++ L D +IS G+++ I G S+F + Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEIS-----TEGSQIAIVGGSSDFTVAG 115 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P + + + SS L +++ T A++ ++ R L GI F I + +K Sbjct: 116 QSADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK-- 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESR 227 AV+TD HRL+ +I K+ + ++VP KA+ E+ +L + D+ + + S+ Sbjct: 174 AVSTDSHRLS-------QRITKIGNDSQADVVVPSKALIELRALLENIDN-LNLQFDRSQ 225 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV- 286 + +++ + RL++G++P +IP + ++ L ++DR S+++ V Sbjct: 226 LLVDLGETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVA 285 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNI 336 + S+S DKL ++ ++GK +E +++ + + I FN ++ + + +I Sbjct: 286 EFSISQDKLVLSTAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSI 336 >gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Rv] gi|15839374|ref|NP_334411.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CDC1551] gi|148659759|ref|YP_001281282.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra] gi|148821193|ref|YP_001285947.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis F11] gi|167969465|ref|ZP_02551742.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra] gi|215405986|ref|ZP_03418167.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 02_1987] gi|215413856|ref|ZP_03422521.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215425188|ref|ZP_03423107.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T92] gi|215432907|ref|ZP_03430826.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054] gi|215448275|ref|ZP_03435027.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85] gi|218755718|ref|ZP_03534514.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis GM 1503] gi|219555773|ref|ZP_03534849.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T17] gi|253796917|ref|YP_003029918.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 1435] gi|254233407|ref|ZP_04926733.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|254366462|ref|ZP_04982506.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|254548930|ref|ZP_05139377.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198986|ref|ZP_05766477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T46] gi|260203139|ref|ZP_05770630.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis K85] gi|289441369|ref|ZP_06431113.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46] gi|289552252|ref|ZP_06441462.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 605] gi|289567884|ref|ZP_06448111.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T17] gi|289572578|ref|ZP_06452805.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis K85] gi|289747772|ref|ZP_06507150.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis 02_1987] gi|289748464|ref|ZP_06507842.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T92] gi|289756061|ref|ZP_06515439.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054] gi|289760099|ref|ZP_06519477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85] gi|289764117|ref|ZP_06523495.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|294995610|ref|ZP_06801301.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 210] gi|297632470|ref|ZP_06950250.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297729439|ref|ZP_06958557.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN R506] gi|298527400|ref|ZP_07014809.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306778290|ref|ZP_07416627.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu001] gi|306778820|ref|ZP_07417157.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu002] gi|306782608|ref|ZP_07420930.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu003] gi|306786976|ref|ZP_07425298.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu004] gi|306795596|ref|ZP_07433898.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu006] gi|306801571|ref|ZP_07438239.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu008] gi|306805780|ref|ZP_07442448.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu007] gi|306970177|ref|ZP_07482838.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu009] gi|306974409|ref|ZP_07487070.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu010] gi|307082117|ref|ZP_07491287.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu011] gi|307086728|ref|ZP_07495841.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu012] gi|313656768|ref|ZP_07813648.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN V2475] gi|3913519|sp|Q50790|DPO3B_MYCTU RecName: Full=DNA polymerase III subunit beta gi|3261513|emb|CAA16239.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|13879043|gb|AAK44225.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis CDC1551] gi|124603200|gb|EAY61475.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|134151974|gb|EBA44019.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|148503911|gb|ABQ71720.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis H37Ra] gi|148719720|gb|ABR04345.1| DNA polymerase III beta subunit dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis F11] gi|253318420|gb|ACT23023.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 1435] gi|289414288|gb|EFD11528.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46] gi|289436884|gb|EFD19377.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 605] gi|289537009|gb|EFD41587.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis K85] gi|289541637|gb|EFD45286.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T17] gi|289688300|gb|EFD55788.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis 02_1987] gi|289689051|gb|EFD56480.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T92] gi|289696648|gb|EFD64077.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054] gi|289711623|gb|EFD75639.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|289715663|gb|EFD79675.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85] gi|298497194|gb|EFI32488.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308213440|gb|EFO72839.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu001] gi|308328157|gb|EFP17008.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu002] gi|308332531|gb|EFP21382.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu003] gi|308336274|gb|EFP25125.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu004] gi|308343892|gb|EFP32743.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu006] gi|308347676|gb|EFP36527.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu007] gi|308351594|gb|EFP40445.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu008] gi|308352301|gb|EFP41152.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu009] gi|308356304|gb|EFP45155.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu010] gi|308360191|gb|EFP49042.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu011] gi|308363878|gb|EFP52729.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu012] gi|323717341|gb|EGB26546.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CDC1551A] gi|326905761|gb|EGE52694.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis W-148] gi|328456708|gb|AEB02131.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 4207] Length = 402 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 35/384 (9%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + + +PV VLL +D L I E+ + A + GS+ VS LL DI R Sbjct: 33 LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138 L + + E G V ++ G++ F L + P ++P+ T EE + L + + Sbjct: 93 LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197 + + A ++ L GI I E + L ATD RLAV E+ A + + Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++VP K + E + S V++SL + + ++ + RL+D EFP ++ Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 ++P + ++ L +A+ V++++ R V++ + + ++ D+G+A E Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367 + V Y P+ I FN YL + + ++ S + V F ++ +R G D+ Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376 Query: 368 NNKDN------KVNAFYVLMPMRI 385 N + Y+LMP+R+ Sbjct: 377 GLNGNGPFPAVSTDYVYLLMPVRL 400 >gi|34541464|ref|NP_905943.1| DNA polymerase III subunit beta [Porphyromonas gingivalis W83] gi|34397781|gb|AAQ66842.1| DNA polymerase III, beta subunit [Porphyromonas gingivalis W83] Length = 377 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 22/353 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L R+I ++T+P+ VL + L + A+ ++ + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAA----DMANRMSTE 56 Query: 61 VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSF 113 + V GS V +L + +++L D ISF E E+ S+G +F +Q Sbjct: 57 LTVNNVGGENGSFAVPERILLEPLKELPD-QPISFEINMETKAAEIAYSNGHYSFVVQDV 115 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++ E + S A ++L L T FA + +E R + G++ E+ KL Sbjct: 116 STYPVAASLSPEAIVSIVPAEALLSGL-SATLFATSQDERRPIMTGVYLDFFED--KLVF 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V +DG L V + D Q + + +PRKA + +L + V ++ + +H+ + Sbjct: 173 VGSDGQIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ RL++G +PNY +VIP SN ++V+ L RVSI S+ +++ + Sbjct: 232 NYTLRARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPA 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMD----ICFNYKYLLEIIDNISSDEVV 342 + ++ ++ D A E ECP D I F I+ + S+EV+ Sbjct: 292 GIRLSANDIDFSVAAEEH--VPAECPADINMRIGFKSDVFQTILQGMPSEEVI 342 >gi|288573678|ref|ZP_06392035.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569419|gb|EFC90976.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 386 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 91/394 (23%), Positives = 187/394 (47%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59 MK+T++++ ++ A R+ +K+T+ V +L A DG + ++A+ + + + Sbjct: 1 MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESE 117 ++D G + ++ ++ +K + S F + E GT + +S G + + ++P + Sbjct: 61 TIDEPGKAVLPIKVVGELFKK----SPTSIFTVEVAERGTGILLS-GRNRYRFTTYPADD 115 Query: 118 FPSTKEEEYVYSF-ELASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDLKLC-AV 174 FP E F LA L +++ A + EE YL + + C V Sbjct: 116 FPPLPSPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGE---CHCV 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNI 232 +TDG RL++++ + + + +++P +V E LRILS +D V VS+ + + + Sbjct: 173 STDGRRLSLSKAYVDKENPEQ-DMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQL 231 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS- 291 +SL SVR +D FPNY+ ++ + L V+ + A++RV ++ + V L LS Sbjct: 232 DSLEFSVRRVDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSP 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L ++ P++G+A E ++ + + FN +L++ + D+V Sbjct: 292 GGDLKLSGRAPEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKV---------- 341 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ G++ + N+ + Y+LMP+++ Sbjct: 342 ----SLSFNGQEGQMMMLRPNESDFLYMLMPIKL 371 >gi|300814758|ref|ZP_07095006.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511145|gb|EFK38397.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 365 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 81/343 (23%), Positives = 163/343 (47%), Gaps = 10/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R D+ + + R I + T+ + +L+++ D + + A+ EI I A Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V+ L +I+RKL + F K +NI G+S F + +P+ Sbjct: 61 VEEEGQIVVNGRLFGNIIRKLNNDD--IFIKVENFN--MNIKCGNSEFNISVQNAEGYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F L+ LK+ + +T FA++ +E R G++ ++ + VA DG R Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDHINF--VALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ +++ S IVP ++ E+ +IL + ++L + I + Sbjct: 175 MAIMKIN--KNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 LI G+F +Y+N++ S + V + + A +R S+++ R V+++L+++++ + Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYID- 291 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++G E +N + I FN +Y+LE I + +D ++ Sbjct: 292 SKSEIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNII 334 >gi|326789141|ref|YP_004306962.1| DNA polymerase III subunit beta [Clostridium lentocellum DSM 5427] gi|326539905|gb|ADZ81764.1| DNA polymerase III, beta subunit [Clostridium lentocellum DSM 5427] Length = 368 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 82/364 (22%), Positives = 179/364 (49%), Gaps = 23/364 (6%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83 K T+P+ +LL+A++ L + + E+ I I A V G I + + + +I+R++ Sbjct: 24 KTTMPILECILLKASNNKLTLVGNNLELGIESTIDADVINEGYIALESKIFSEIIRRMP- 82 Query: 84 GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVER 143 G + ++ T + IS S F + +FP+ + E + LK ++ + Sbjct: 83 GEVVEISTDDNFMTSI-ISE-KSKFQIAGQSGKDFPALPDVEKANICTVNQLALKEMIRQ 140 Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 T F++A +E R L G I +L + V+ DG+R++ ++ + + ++ +++P + Sbjct: 141 TIFSVAQDETRPILTGEMLQIKNNNLNM--VSVDGYRISYRQLQLSNENGEI-EVVIPGR 197 Query: 204 AVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262 + EI +IL+S++ V V + + ++ + RL++GEF Y+ V + ++ Sbjct: 198 TLSEINKILTSEEKEDVTVYFGDKHVLFDLGDSKVVSRLLEGEFLKYEQVFSPDYETKIL 257 Query: 263 VNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321 V+ N +++R +++S + +++ ++ +K+ +T N ++G A E ++V + Sbjct: 258 VDRKNFLMSIERAALISREGKKNPIRVEINGEKMIIT-SNAELGTAREELDVILEGKEIT 316 Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 I FN KYL++ + I DD V SS + I+ ++ + Y+++ Sbjct: 317 IAFNPKYLIDALKAID-----DDNVCIHFISSLTPCIIQPEEGEHYK---------YLIL 362 Query: 382 PMRI 385 P+R+ Sbjct: 363 PIRV 366 >gi|325678528|ref|ZP_08158139.1| DNA polymerase III, beta subunit [Ruminococcus albus 8] gi|324109747|gb|EGC03952.1| DNA polymerase III, beta subunit [Ruminococcus albus 8] Length = 370 Score = 95.5 bits (236), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 86/352 (24%), Positives = 171/352 (48%), Gaps = 20/352 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + + + + + + ++T+P + D LLE+ E+ I AIP Sbjct: 1 MRFICSKTSLYDAIVNVSKAVSERSTLPSLEGIRFSLADSLLELTGYNLEMGIRTAIPVR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS ++A L ++++K+ D ++ ++ S + F + + +++P Sbjct: 61 SDDKGSCIMNARLFAEMIKKM-DTEELLIDVSESYQVTISGSATKTTFNMFAATAADYPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E++ +A VLKN++ +T FA+A + + L G F I E+ L VA DG+R Sbjct: 120 LPEKDSETQIPIAQPVLKNMIAQTKFAVAMTDDKPILKGELFDI--ENNTLTMVAIDGYR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +AV + + + +VP K++ EI +LS ++D +V + S I +I + Sbjct: 178 MAVRYEPV--KFNEPIKFVVPSKSLSEIQSLLSDNEDDTVYIHPSRKHIIFDIGGYVVYS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKL--- 295 RL++G+F Y++ IP S++ ++ V+ L ++R ++ + R + V+ +D + Sbjct: 236 RLLEGDFHPYKSAIPNSSNTDVVVDRKALISTLERAMLLINDRSPSPVRCYFDNDHVKLN 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 C+ +GK + + ++I F KYLLE + +V+DDE V Sbjct: 296 CVAA----LGKISDEIAADVTGPVIEIGFKCKYLLEPL------KVIDDEKV 337 >gi|302535571|ref|ZP_07287913.1| DNA polymerase III, beta subunit [Streptomyces sp. C] gi|302444466|gb|EFL16282.1| DNA polymerase III, beta subunit [Streptomyces sp. C] Length = 376 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 93/395 (23%), Positives = 173/395 (43%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDRVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGQGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + + D +A+E ++ + I FN +LL+ + I S Sbjct: 289 QGVLILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDS-----PAAQLSFT 343 Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ ++ K Y++MP+R+ Sbjct: 344 TSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374 >gi|317486107|ref|ZP_07944954.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316922630|gb|EFV43869.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 382 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 101/402 (25%), Positives = 185/402 (46%), Gaps = 46/402 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M TV++ +I+E L A II + + ++A +L I A+ IE TG PA Sbjct: 1 MLFTVKKENIIEGLQKAAGIIPTRAGAAYLRSLWIKAEGEVLTIMATDANIEFTGTYPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 V G + V+ D+VR+L G ++ ++ GT V + G + L + + F Sbjct: 61 VKEPGLVGVNGRNFVDLVRRLPAG-ELRIRLDDATGT-VILEQGRRTYKLPANDPTWFQS 118 Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVA 175 P + E V+S + + +++R F ++ +E + ++F + E +++C + Sbjct: 119 LAPFSSEGAVVWSGDF----FQEIIDRVFFCVSDDESSDAIACLYFKPVGEGHIEVCGL- 173 Query: 176 TDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--- 230 +GH+ A+ A++P +++ RK VGE+ + L + ++V+L++ R+ + Sbjct: 174 -NGHQFALTRFTHDDLSARLPEDGVLIQRKYVGELRKWLGGDE--IEVNLTDKRLFVRSG 230 Query: 231 -NIESLSMSVRLIDGEFPNYQNVIP--CSNDKEL----RVNCTNLRQAVDRVSIMSSVRI 283 E+LS+ +P+Y + S D L R +C + A+DR+SI ++ Sbjct: 231 DGHETLSLPRAGY--AYPDYSPFMTRLASPDVSLLKLSRKDCLD---ALDRISIFNTESD 285 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + LSS + ++ D G A ES+ V YN I F K L+EI+ + S Sbjct: 286 RCTYFELSSAEAMLSAQGQDTGSANESLEVSYNGSIGRIAFPTKNLMEILTHYQS----- 340 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ F L + I G + + D V ++MPM+I Sbjct: 341 GELTFTLTGAEGPCGINGTE-----DPDYTV----LIMPMKI 373 >gi|302388601|ref|YP_003824422.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM 16646] gi|302199229|gb|ADL06799.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM 16646] Length = 370 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 79/347 (22%), Positives = 162/347 (46%), Gaps = 18/347 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ +L + A R I K T+P+ + A LE+ ++ E+ I +PA Sbjct: 1 MQFLIEKDQLLSGVSVAERFIASKTTMPILSGIKFSAYGSTLELSSTDLEMGIECRLPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G +S + DI RKL G Q+ F ++ ++ + GD + +FP Sbjct: 61 IMEEGDAVISTKVFSDIARKLPQG-QVLFRRQE---GQITVEAGDFRLNMPVLEAGDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDGH 179 E + KN+V++T FA A + I R L G + + + VA DG Sbjct: 117 VVPPETNPILKFPKETFKNMVKQTIFARAEDSIARPVLTGEL--LEARNGRFHVVALDGF 174 Query: 180 RLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLS 236 R+A + A++P S++VP +A+ E+ R LS + + + ++ +R+ E+L Sbjct: 175 RIAWR-----WEEAEVPDFSVVVPGRALLELTRALSDTGEDTFEIHTGRNRVVFCTENLV 229 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDK 294 M+ R+++G+F +Y+ V+ + L +++R I++ + VK + + + Sbjct: 230 MATRVLEGKFIDYEQVVKVDPKITVVAKTDALLSSIERAFIVAREGSKNNLVKFRIGNGR 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++ + +MG E + + + + FN ++ +E + ++ E+ Sbjct: 290 MEVSSET-EMGSVYEKVECETSGDDLVVAFNARFFIEALRSVEQPEI 335 >gi|332982992|ref|YP_004464433.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON] gi|332700670|gb|AEE97611.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON] Length = 374 Score = 95.1 bits (235), Expect = 1e-17, Method: Compositional matrix adjust. Identities = 91/393 (23%), Positives = 182/393 (46%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +E+ ++ ++ A + + ++ +PV V L A +L A+ I + A Sbjct: 1 MYVEIEKDNLETVVATAGKALATRSVLPVLEGVKLSATGNMLTADATNTVTHIAVSKAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I + LL DIV L +G ++ +N+ V I+ G S L + P +FPS Sbjct: 61 VTETGAIVTNGKLLIDIVSSLPEG-PVTIKTDNQ--GNVVITAGLSEITLATLPAKDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTH-FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F + + VLK++++ T FA + + L G+ + +L + A+ DG+ Sbjct: 118 PPAVETGAEFSIPADVLKSMIKGTSLFAAPDQSAQEILTGVAMELEGTNLVMTAI--DGY 175 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLS 236 R+A +V A + I+P K++ + +IL + VK+SL I N + Sbjct: 176 RIA-QRCSVVTNTAGYNGTAIIPAKSLATLAKILPVGNGDVKISLGNKVIRFNTADGGII 234 Query: 237 MSVRLIDGEFPNYQNVI-PCSNDKELRVN--CTNLRQAVDR-VSIMSSVRIQAVKLSLSS 292 + L++G++ +Y+ +I D++ R+ ++R AV R V++ + +KL +++ Sbjct: 235 FTAVLLNGKYIDYKGLIDEALEDRKSRMTLFTEDMRSAVGRDVTVAQAGNSTLLKLEVTN 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L + + D+ K + + V + N KYL +++ I DD++V S Sbjct: 295 NYLLLNT-SVDIAKVSDRIAVDCEGEDAKVGLNGKYLSDVLSVIG-----DDQIVLSFGS 348 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + ++ ++ Y ++P+R+ Sbjct: 349 SADPILVQPVEEQEY---------LYYILPIRL 372 >gi|119025020|ref|YP_908865.1| DNA polymerase III subunit beta [Bifidobacterium adolescentis ATCC 15703] gi|118764604|dbj|BAF38783.1| DNA polymerase III, b subunit DnaN [Bifidobacterium adolescentis ATCC 15703] Length = 374 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/393 (24%), Positives = 177/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 1 MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L A ++ + G+ + I+ G S F +Q PESE+P Sbjct: 61 VDEAGSVLVLGKLLADITKSLP--AAKTYLSTD--GSTMTITSGKSTFTMQLMPESEYPD 116 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L S V + A++ EE R L GI + K+ +TD Sbjct: 117 LP----VVPTKLGQVDSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL---SESRIHLNIE 233 RLA + + A + + + R G +LR ++ S D V++ +++ L E Sbjct: 171 RFRLARSSFTWTPEDATISTTALVR---GSLLRDMARSLDEHQNVTIDFDADNPSLLGFE 227 Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +LIDGEFP + +N L A+ RVS+++ R +++ S Sbjct: 228 NAGRVSTSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVAE-RNAPIRMVFS 286 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++ D +A E +++ + + + FN YL++ + IS + V ++ Sbjct: 287 GQELTLSAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMT 341 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ V G+ + + D ++ Y+L+PMR Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMR 371 >gi|307945020|ref|ZP_07660356.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] gi|307770893|gb|EFO30118.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] Length = 399 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 70/266 (26%), Positives = 136/266 (51%), Gaps = 32/266 (12%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F + + VL++ +T +++TEE+RYYL G++ H + K A +TDGHRL + E D+ Sbjct: 154 FLIPTHVLRDAFRKTLPSVSTEEVRYYLRGVYLH--AYNGKFRAASTDGHRLTIFEDDLP 211 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSK----DSSVKVSLSESRIHLNIESLS-MSVRLIDG 244 + +P II+P K V E++R+LS K S VKV + E+ + ++V+ IDG Sbjct: 212 PGVTDIPPIIIPTKGVQEVVRMLSRKGIDASSQVKVIVDEAGVFFQFGDYELLAVKAIDG 271 Query: 245 EFPNYQNVIPCSNDKELRVNCTNL--RQAVDRVSIMSSVR--IQAVKLSLSSDKLCMTVD 300 FP+YQ +IP + VN + ++ D + + S++ V S + ++V Sbjct: 272 TFPDYQRLIPA-----MPVNFVSFEAQKMEDALKALLSIKPEFNRVLCSFEESGIHLSVS 326 Query: 301 NPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + K+ S+ P+ I FN +++ +++ ++++ +D +N V + Sbjct: 327 TEEGAKSRTSLKANLEGIDPIQIKFNGQFISDLM------KLIEGRARVCIDHNNQPVVL 380 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D+++ Y++MP++I Sbjct: 381 -------QDVSDDRMT--YLVMPLKI 397 >gi|241888986|ref|ZP_04776290.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379] gi|241864235|gb|EER68613.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379] Length = 379 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/324 (23%), Positives = 159/324 (49%), Gaps = 18/324 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV---------SCHVLLQANDGLLEIKASGPEI 51 MK T+ +S+ L+ L H R+I + + ++L+A+D L+ ++ S Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60 Query: 52 EITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 E + +++ G + + + +I+RK A + +G + + G S F ++ Sbjct: 61 EDDKEV-ITIEEEGQVVLPSRNFIEIIRK----APTDLIEIETVGNNILVKSGKSEFNVK 115 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 + +++P S +L ++V ++++ T F A + R L G+ F ++ + L Sbjct: 116 GYDANDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNK--IL 173 Query: 172 CAVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 A ATD +RL+ +V + + + K ++I+PRKA+ R++ + V++ +RI L Sbjct: 174 TATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVL 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 +++ +V LI G +PN +IP + N AVDRV++MS + +KL Sbjct: 234 YYQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLV 293 Query: 290 LSSDKLCMTVDNPDMGKAIESMNV 313 ++ + L ++ + ++G A+E + V Sbjct: 294 VTDNLLEVSSQSKELGSAVEELKV 317 >gi|154486347|ref|ZP_02027754.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis L2-32] gi|154084210|gb|EDN83255.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis L2-32] Length = 374 Score = 95.1 bits (235), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/393 (24%), Positives = 177/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 1 MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L A ++ + G+ + I+ G S F +Q PESE+P Sbjct: 61 VDEAGSVLVLGKLLADITKSLP--AAKTYLSTD--GSTMTITSGKSTFTMQLMPESEYPD 116 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L S V + A++ EE R L GI + K+ +TD Sbjct: 117 LP----VVPTKLGQVDSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL---SESRIHLNIE 233 RLA + + A + + + R G +LR ++ S D V++ +++ L E Sbjct: 171 RFRLARSSFTWTPEDATISTTALIR---GSLLRDMARSLDEHQNVTIDFDADNPSLLGFE 227 Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +LIDGEFP + +N L A+ RVS+++ R +++ S Sbjct: 228 NAGRVSTSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVAE-RNAPIRMVFS 286 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++ D +A E +++ + + + FN YL++ + IS + V ++ Sbjct: 287 GQELTLSAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMT 341 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ V G+ + + D ++ Y+L+PMR Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMR 371 >gi|320103682|ref|YP_004179273.1| DNA polymerase III subunit beta [Isosphaera pallida ATCC 43644] gi|319750964|gb|ADV62724.1| DNA polymerase III, beta subunit [Isosphaera pallida ATCC 43644] Length = 378 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 19/256 (7%) Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 +A++ LK L++RT FA E R+ L G+ F + E L V TDG RLA +V + Sbjct: 130 VAAADLKKLIKRTIFATELESTRFALGGVLFEFSPEGNLLTGVGTDGRRLAHTQVPAEPE 189 Query: 192 IAKMPSI---IVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSVRLIDGEFP 247 P ++P KA+ + R L D V ++ S + + + + + RL++G FP Sbjct: 190 GGVTPPAGQPVIPVKALKLLDRNLDDDDPPVHIAFPSPNAVVIRTDRSVIWSRLVEGRFP 249 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 Y++V P S + + + LR V++ +I++S + V + + KL + D G++ Sbjct: 250 RYRDVFPTSCEARIPIEAGLLRSRVEQAAIVTSDESRGVDFTFADGKLTLAARAADSGES 309 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 M + Y+ ++I F+ YLLE++ + +E + E++ D N++V IR D+ S Sbjct: 310 QVEMPIRYSGATIEITFDPTYLLEMLKVLPEEEEIVIELI---DDKNAAV-IRHADRYS- 364 Query: 368 NNKDNKVNAFYVLMPM 383 Y+LMP+ Sbjct: 365 ----------YILMPL 370 >gi|9845532|gb|AAG00841.1| DnaN [Mycobacterium tuberculosis] Length = 402 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 169/384 (44%), Gaps = 35/384 (9%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + + +PV VLL +D L I E+ + A + G++ VS LL DI R Sbjct: 33 LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGTVLVSGRLLSDITRA 92 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138 L + + E G V ++ G++ F L + P ++P+ T EE + L + + Sbjct: 93 LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197 + + A ++ L GI I E + L ATD RLAV E+ A + + Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++VP K + E + S V++SL + + ++ + RL+D EFP ++ Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 ++P + ++ L +A+ V++++ R V++ + + ++ D+G+A E Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367 + V Y P+ I FN YL + + ++ S + V F ++ +R G D+ Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376 Query: 368 NNKDN------KVNAFYVLMPMRI 385 N + Y+LMP+R+ Sbjct: 377 GLNGNGPFPAVSTDYVYLLMPVRL 400 >gi|300742655|ref|ZP_07072676.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567] gi|300381840|gb|EFJ78402.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567] Length = 375 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 180/389 (46%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L++A G + I + EI I AS Sbjct: 1 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAKSGEVSISSFDHEISAKQTIEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ V +L +I R L + A + F + + + ++ + F L P +++P Sbjct: 61 VEQEGTCLVPGKMLAEICRSLPN-ADVEFVAND---STIFMTCRSAKFQLAGMPVADYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V + A++ +E L GI I+ + L +ATD +R Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237 LA+ E+ + ++ ++++ K + E+ R LSS + ++L E+ I + S Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296 + L+DG++PN + + P V ++L +A R+S+++ R ++L + D ++ Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVAE-RNTPLRLQFTEDGQVS 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A ESM + + + +N YL E + + D V F + Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+D+ + ++ Y++ P+R+ Sbjct: 347 AVLSGQDEPL---SEEDLSYRYLVQPIRL 372 >gi|325961452|ref|YP_004239358.1| DNA polymerase III subunit beta [Arthrobacter phenanthrenivorans Sphe3] gi|323467539|gb|ADX71224.1| DNA polymerase III, beta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 374 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 100/392 (25%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + E + R + + +PV +LL+A G + + + E I A Sbjct: 1 MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIGAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I VS LL DI R L A + + G +V ++ S+F+L + PE+E+P Sbjct: 61 IRDEGTILVSGRLLADICRSLP-SAPVDVETD---GNKVTLTCRRSSFHLATMPEAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + V + A + ++ L G+ I E+DL + +ATD +R Sbjct: 117 LPALPAI-SGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173 Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLS 236 LA+ EV + I+ S +V K + E+ + L S D ++ +S +SR+ + ES Sbjct: 174 LAMREVPWKPVTPGIST--SALVKAKTLNEVAKTLGNSGDINLALSDDDSRL-IGFESGG 230 Query: 237 MSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P +++ P S V L +AV RVS+++ R V+L+ + + Sbjct: 231 RTTTSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTQGQ 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + +A E + + + + FN YL+E + I + V F ++ Sbjct: 290 LNLDAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIET-----KFVRFSFTTAP 344 Query: 355 SSVFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385 I + D D ++ D + Y++MP+R+ Sbjct: 345 KPAMITAQADADGEDQDDYR----YLVMPVRL 372 >gi|312134084|ref|YP_004001422.1| DNA polymerase III subunit beta [Caldicellulosiruptor owensensis OL] gi|311774135|gb|ADQ03622.1| DNA polymerase III, beta subunit [Caldicellulosiruptor owensensis OL] Length = 368 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 33/360 (9%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 +L++A D ++ + ++++ A + G+ V A L DIV+KL DG + +E Sbjct: 33 ILIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPDG-DVEVIRE 90 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 + EV I F L + +FP ++ E +S + ++R FA + +E Sbjct: 91 D---NEVRIRSQKIEFRLPTLDPLDFPKMDKKPAESFCEFVASEFVDSIDRVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F E+D + V DGHRLA+ ++ V ++ S IVP + +I +I+ Sbjct: 148 TRPTFTGVLFERQEDDF-VNLVGMDGHRLAICKIKPV-EVEGSFSKIVPADNLDDITKII 205 Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 +D+ V+VS E++ I S ++ V LI G+F +Y++ IP + ++ L Sbjct: 206 DIEDAEKVRVSFYENQATFEIGSTTVIVTLIAGKFFDYKSAIPTEYSTRISISTDVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSS---DKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 ++R SI+S IQAV + M+ D G+ E + + I FN Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMIFKVYSMSAD----GRYEEDVLCSVEGKDIKIGFN 321 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 KY L+++ +V+D E+ ++FI + S K + N Y+++P+++ Sbjct: 322 VKYFLDVL------KVLDGEI---------NLFITSQTSPSIVQKPDDENYIYLVLPIKM 366 >gi|220910785|ref|YP_002486094.1| DNA polymerase III subunit beta [Arthrobacter chlorophenolicus A6] gi|219857663|gb|ACL38005.1| DNA polymerase III, beta subunit [Arthrobacter chlorophenolicus A6] Length = 374 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 100/390 (25%), Positives = 180/390 (46%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + E + R + + +PV +LL+A G + + + E I A Sbjct: 1 MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEITAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I VS LL DI R L A + + G +V ++ S+F+L + PE+E+P Sbjct: 61 IRDEGTILVSGRLLADICRSLP-SAPVDVETD---GNKVTLTCRRSSFHLATMPEAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + V + A + ++ L G+ I E+DL + +ATD +R Sbjct: 117 LPALPAI-SGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 LA+ EV + S +V K + E+ + L S D S+ +S ++R+ + ES + Sbjct: 174 LAMREVPWKPVTPGVSTSALVKAKTLNEVAKTLGNSGDISLALSDDDTRL-IGFESGGRT 232 Query: 239 VR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 L+DG++P +++ P S V L +AV RVS+++ R V+L+ ++ L Sbjct: 233 TTSLLVDGDYPKIRSLFPESTPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTAGLLN 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + +A E + + + + FN YL+E + I + V F S+ Sbjct: 292 LDAGTGEDAQASEELEAQLSGDDITVAFNPHYLVEGLSVIET-----KFVRFSFTSAPKP 346 Query: 357 VFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385 I + D D ++ D + Y++MP+R+ Sbjct: 347 AMITAQADADGEDQDDYR----YLVMPVRL 372 >gi|282881769|ref|ZP_06290427.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B] gi|281298379|gb|EFA90817.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B] Length = 365 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 81/343 (23%), Positives = 163/343 (47%), Gaps = 10/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R D+ + + R I + T+ + +L+++ D + + A+ EI I A Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V+ L +I+RKL + F K +NI G+S F + +P+ Sbjct: 61 VEEEGQIVVNGRLFGNIIRKLNNDD--IFIKVENFN--MNIKCGNSEFNISVQNAEGYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F L+ LK+ + +T FA++ +E R G++ ++ + VA DG R Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDYINF--VALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ +++ S IVP ++ E+ +IL + ++L + I + Sbjct: 175 MAIMKIN--KNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 LI G+F +Y+N++ S + V + + A +R S+++ R V+++L+++++ + Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYID- 291 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++G E +N + I FN +Y+LE I + +D ++ Sbjct: 292 SKSEIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNII 334 >gi|242281239|ref|YP_002993368.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM 2638] gi|242124133|gb|ACS81829.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM 2638] Length = 387 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 98/413 (23%), Positives = 182/413 (44%), Gaps = 65/413 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R +++E L + II K + L+++ G L I ++ +E G PA Sbjct: 1 MYLKVNRDEVIEGLQKSASIIPAKTGAAYLRTIWLKSDGGNLRIMSTDSNLEFCGTYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 + G V YD+VRKL G K + G+ + + G + + Q Sbjct: 61 IMEEGLAGVQGRAFYDLVRKLPSGELT--IKNDADGSSILVEQGSRKYKLPVNDPTWFQK 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-----------NGIF 161 F S FPS E V+ + L L+ER F ++ E+ + NG F Sbjct: 119 F--SSFPS---EGAVF---WSGDFLLELIERIAFCISDEDSMEAIACMNIVPAADENGKF 170 Query: 162 FHINEEDLKLCAVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219 +++C + +GH+ A + D + I I++ +K + E+ + L+ + + Sbjct: 171 -------VEVCGL--NGHQFARLKFINDDIHSILPEEGILIQKKYLVELKKWLT--EDEI 219 Query: 220 KVSLSESRIHLNI----ESLSMSVRLIDGEFPNYQNVIPCSNDKE---LRVNCTNLRQAV 272 ++SLSE R+ E+ S+ + ++PNY+N + ND + ++V + L A+ Sbjct: 220 ELSLSEKRLFFKTADGKETFSLPLSYY--QYPNYKNFLSKLNDDDVSRMKVEKSELSMAL 277 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 DR+SI ++ + + +L + ++G A ESM + ++ I F K L+EI Sbjct: 278 DRISIFNTDSNRCASFLFNPGELVLFSQGQEVGTATESMEIEFSGEMERIAFPTKNLIEI 337 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + S D++ F L + + + G D DN+ ++MPM++ Sbjct: 338 LGHFQS-----DKINFTLTGAEAPCGVTGGD-------DNEY--LVIVMPMKV 376 >gi|188995650|ref|YP_001929902.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis ATCC 33277] gi|188595330|dbj|BAG34305.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis ATCC 33277] Length = 377 Score = 94.7 bits (234), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 22/353 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L R+I ++T+P+ VL + L + A+ ++ + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAA----DMANRMSTE 56 Query: 61 VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSF 113 + V GS V +L + +++L D ISF E E+ S+G +F +Q Sbjct: 57 LTVNNVGGENGSFAVPERILLEPLKELPD-QPISFEINMETKAAEIAYSNGHYSFVVQDA 115 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++ E + S A ++L L T FA + +E R + G++ E+ KL Sbjct: 116 STYPVAASLSPEAIVSVIPAEALLSGL-SATLFATSQDERRPIMTGVYLDFFED--KLVF 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V +DG L V + D Q + + +PRKA + +L + V ++ + +H+ + Sbjct: 173 VGSDGQIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ RL++G +PNY +VIP SN ++V+ L RVSI S+ +++ + Sbjct: 232 NYTLRARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPA 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMD----ICFNYKYLLEIIDNISSDEVV 342 + ++ ++ D A E ECP D I F I+ + S+EV+ Sbjct: 292 GIRLSANDIDFSVAAEEH--VPAECPADINMRIGFKSDVFQTILQGMPSEEVI 342 >gi|311112570|ref|YP_003983792.1| DNA-directed DNA polymerase III subunit beta [Rothia dentocariosa ATCC 17931] gi|310944064|gb|ADP40358.1| DNA-directed DNA polymerase III beta subunit [Rothia dentocariosa ATCC 17931] Length = 375 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 180/389 (46%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L++A G + I + EI I AS Sbjct: 1 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAESGEVSISSFDHEISAKQTIEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ V +L +I R L + A + F + + + ++ + F L P +++P Sbjct: 61 VEQEGTCLVPGKMLAEICRSLPN-ADVEFVAND---STIFMTCRSAKFQLAGMPVADYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V + A++ +E L GI I+ + L +ATD +R Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237 LA+ E+ + ++ ++++ K + E+ R LSS + ++L E+ I + S Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296 + L+DG++PN + + P V ++L +A R+S+++ R ++L + D ++ Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVAE-RNTPLRLQFTEDGQVS 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A ESM + + + +N YL E + + D V F + Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+D+ + ++ Y++ P+R+ Sbjct: 347 AVLSGQDEPL---SEEDLSYRYLVQPIRL 372 >gi|258646403|ref|ZP_05733872.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470] gi|260403804|gb|EEW97351.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470] Length = 369 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 77/344 (22%), Positives = 152/344 (44%), Gaps = 6/344 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + D+ L R + K T + + A DG +E +A+ I I A Sbjct: 1 MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIGIRTFCEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ +S+ L ++ + G + K+ E + V G N + + +EFP Sbjct: 61 VEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGE--STVFFKAGQYNSHFPTRDTAEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ + + +V FA +T+ GI INE + AT+ HR Sbjct: 119 VTEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINENVFTMA--ATNSHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 LA E+ + + IV + +++R+L +D +++S + + + Sbjct: 177 LAAREISLEEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 LI+G +P+Y+ V P S D ++ + +AV VS +S + + + + L Sbjct: 237 NLINGVYPDYKRVFPSSFDLNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAF 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++PD+G++ S+ + + I FN Y+ +I+ + ++++ Sbjct: 297 EEDPDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKII 340 >gi|167957124|ref|ZP_02544198.1| DNA polymerase III, beta subunit [candidate division TM7 single-cell isolate TM7c] Length = 366 Score = 94.4 bits (233), Expect = 2e-17, Method: Compositional matrix adjust. Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 14/345 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++V + + + L +A RI + +P+ ++LL+ + L + A E+ I Sbjct: 1 MELSVLQENFTKALNNASRIATSRTQLPILNNILLRTDGNRLLVAAMNMEVATMHYIGTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A L+ + V L +I E G + I G + + +FP Sbjct: 61 IIKPGSITVPARLITEFVSSLPK-EKIDLKVE---GEHLIIKAGKYSSVINGIAADDFPE 116 Query: 121 TK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 +E +E+A K V +T A + + R L G++++ E +L L TDG Sbjct: 117 LPAIDENTAIQYEIAPHDFKQAVNQTIIAASNDAARPILTGVYWYSFEGNLYLAG--TDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA E +V+ +++ +II P ++ E LR+++ S V + ES++ I+ ++ Sbjct: 175 YRLA--ERCLVSTESEVAAII-PTNSLQEALRVINDNTSQVTILFDESQVRFKIDDTEIT 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LC 296 +LIDG FP Y+ +IP SN+ + + + + + S +V ++ S+K L Sbjct: 232 SQLIDGNFPPYRQLIPVSNETNVIIKKDDFMRITKIAGLFSRDSGGSVTITADSEKGELS 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++G+ E I N +Y+ E + I D V Sbjct: 292 LHSVASELGENTSEATAKI-EGGGTITLNSRYISEALSVIDGDTV 335 >gi|317054733|ref|YP_004103200.1| DNA polymerase III subunit beta [Ruminococcus albus 7] gi|315447002|gb|ADU20566.1| DNA polymerase III, beta subunit [Ruminococcus albus 7] Length = 368 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 88/358 (24%), Positives = 171/358 (47%), Gaps = 21/358 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + + + + + + ++T+P + D LLE+ E+ I I Sbjct: 1 MKFICTKQTLYDAIVNVSKAVSERSTLPSLEGIKFSLADSLLELTGYNLEMGIRTVISVR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS ++A L ++++K+ + ++ +V IS G + F + + ++P Sbjct: 61 SDDKGSCIINARLFSEMIKKMSADEVLIDISDS---YQVTISGGVTKFNMFAASAEDYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E++ ++ VLKN++ +T FA+A E + L G F I L L VA DG+R Sbjct: 118 LPEKDSETQIPISQPVLKNMIAQTKFAVALTEDKPILKGELFDIENNTLTL--VAIDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +AV + + A+ +VP K++ EI +LS ++D +V + S I +I + Sbjct: 176 MAVRYEPV--KYAEQIKFVVPSKSLSEIQGLLSDNEDDTVYIHPSRKHIIFDIGGYMVYS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKL--- 295 RL++G+F Y++ IP S++ ++ V+ L ++R ++ + R + V+ +D + Sbjct: 234 RLLEGDFHPYKSAIPNSSNTDVVVDRKELISTLERAMLLINDRSPSPVRCFFENDHVKIN 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 C T +GK + ++ ++I F KYLL+ + I D++V R+ S Sbjct: 294 CTTA----LGKISDEISADIAGPVIEIGFKCKYLLDPLKVIE-----DEKVKLRMGGS 342 >gi|297193295|ref|ZP_06910693.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis ATCC 25486] gi|197718390|gb|EDY62298.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis ATCC 25486] Length = 376 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGAVSFSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 VD G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VDEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374 >gi|229156276|ref|ZP_04284372.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342] gi|228627151|gb|EEK83882.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342] Length = 316 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 76/283 (26%), Positives = 137/283 (48%), Gaps = 12/283 (4%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G+I V A +I++K+ + I +NE + I + L FP +EFP+ + Sbjct: 12 AGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNGFPANEFPNVPQ 67 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + ++ + L + ++T FA+A E R L G+ HI + KL ATD HRLA+ Sbjct: 68 IDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLICAATDSHRLAI 125 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 E I + + IVP + E+L++++S V + LSES I + ++ RLI+ Sbjct: 126 RETLISTNVKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIE 183 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNP 302 G++PN ++IP + ++ + Q VDR S+++S V L + ++ N Sbjct: 184 GKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIKVSSNA 243 Query: 303 -DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342 +GK E+ + E +I F+ +++L+ + I + V Sbjct: 244 SQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETVT 286 >gi|330719907|gb|EGG98379.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047] Length = 168 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 59/180 (32%), Positives = 109/180 (60%), Gaps = 14/180 (7%) Query: 207 EILRILSS-KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 E+ R+ S + SVKV +S + I ++ + + +L+DG+FP+YQ V+P ++DKE+ V Sbjct: 2 ELNRLFSGDSEGSVKVVMSSNHIRAVTDNFTFTSKLVDGKFPDYQQVVPKNSDKEMLVER 61 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 L+Q ++R++I+S+ + + V+L + +D L + +NP+ +A ES++V Y+ ++I FN Sbjct: 62 ELLKQVLNRIAILSNEKYRGVRLIVDNDLLQVFANNPEQEEAEESLSVKYDSESLEIGFN 121 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 YLL+++ SS V +V F +NSS+ I + + ++ YV+MPMR+ Sbjct: 122 VSYLLDVLSVTSSTNV---KVSFA--DANSSILIEEIVE--------RPDSLYVVMPMRL 168 >gi|153854254|ref|ZP_01995553.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814] gi|149753029|gb|EDM62960.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814] Length = 452 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 94/385 (24%), Positives = 187/385 (48%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 84 MKITCSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEISGD 143 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D +++ + L T + + F + P EF Sbjct: 144 IIDRGMIAIDAKIFSEIVRKLPDN-EVTIETLDNLQTVITCEK--AKFDIAGKPGDEFAY 200 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S E++ LK ++ +T F+++ E + G F I++ LK+ V+ DGHR Sbjct: 201 LPIIEKEDSIEVSQFTLKEVIRQTIFSISDSESNKLMTGELFDISDNILKV--VSLDGHR 258 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV- 239 +++ +V + +A ++VP K + EI +ILS + +V VS+S ++ H+ E + V Sbjct: 259 ISIRKVPLKKSVADR-KLVVPGKTLIEISKILSGEAENV-VSISYTKNHIVFEFDNTIVV 316 Query: 240 -RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R+N L +DR +++ + + D+L Sbjct: 317 SRLIEGEYFRIDQMLSNDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMEL 376 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +G E + + + I FN K+L++ + I D+EV L ++ + F Sbjct: 377 KIKSQIGSMNEEIMITKEGKDLLIGFNPKFLIDALRVID-----DEEVTIYLMNAKAPCF 431 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ + Y+++P+ Sbjct: 432 I----------KDDEESYIYLILPV 446 >gi|313112576|ref|ZP_07798237.1| DNA polymerase III beta subunit protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310625098|gb|EFQ08392.1| DNA polymerase III beta subunit protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 246 Score = 94.4 bits (233), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDI 77 + + ++ IPV +LL+A L + E+ I I A+V G + ++A LL + Sbjct: 18 SKAVTMRSAIPVLEGILLKAEGFQLNLTGYDLEMGIVTTIEANVKEAGEVVLNAKLLSSM 77 Query: 78 VRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 + ++ G Q+S EN + I G F +QS P ++FP + + + V Sbjct: 78 ISRMPAG-QVSILSAEN---GKTTIQSGVVQFEIQSMPANDFPELPNTGAEETLTIKTGV 133 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK++++RT +A++ +E + G F I + KL VA DG+RLA+ E + A K Sbjct: 134 LKDMIDRTLYAVSQDEKKPAHTGELFEILPD--KLTVVALDGYRLAIVERPVTA--VKDI 189 Query: 197 SIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 IIVP K + E+ +L + D V +S + + ++ RLI+GEF NY+NV Sbjct: 190 RIIVPSKTMTEVAHLLPNDDEEPVHISANRRYVVFMAGGYTIMSRLIEGEFLNYRNV 246 >gi|330470834|ref|YP_004408577.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] gi|328813805|gb|AEB47977.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] Length = 373 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 92/393 (23%), Positives = 184/393 (46%), Gaps = 34/393 (8%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV--D 62 +ER + E + + + + ++PV V+L+ DG L++ SG + E++ + V D Sbjct: 1 MERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGTLQV--SGFDYEVSSQVTVEVQGD 58 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ VS LL +I + L G + +G + + G + F L + P ++P+ Sbjct: 59 ADGAALVSGRLLAEITKALP-GKPVDI---AAVGAHLELVCGSARFTLPTMPVEDYPTLP 114 Query: 123 E-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E E + + A+ A + +E + G+ ++ L + +ATD +RL Sbjct: 115 EMPESAGTIDAAAFAAAVAQ--VAVAASRDETLPMMTGVRVELSGGTLSM--LATDRYRL 170 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESL 235 A+ E++ ++ + +VP + + + + L V ++LS E I + + Sbjct: 171 ALREMEWNPDDPEISINALVPARTLNDTAKALGPVGGQVTMALSQGAAGEGMIGFSGGTR 230 Query: 236 SMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+DG +P +++ P S++ E RV + L + V RV++++ R V LS S+D Sbjct: 231 RTTSRLLDGANYPPVRSLFPASHNAEARVPVSTLIEVVKRVALVAE-RTTPVLLSFSADG 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + +A E+M + P+ I FN +YL++ + N+ + V V D+ Sbjct: 290 LVVEAGGTEEARASEAMEATFTGEPLTIGFNPQYLIDGLANLGAQFAVLQFV----DAFK 345 Query: 355 SSVFIRGKDKDSKNNKDNK-VNAF-YVLMPMRI 385 +V S +D + + + Y++MP+R+ Sbjct: 346 PAVI-------SPAGEDGELIGGYRYLIMPIRV 371 >gi|254387091|ref|ZP_05002365.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1] gi|194345910|gb|EDX26876.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1] Length = 376 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 93/395 (23%), Positives = 172/395 (43%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDRVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + + D +A+E ++ + I FN +LL+ + I S Sbjct: 289 QGVLILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDS-----PAAQLSFT 343 Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ ++ K Y++MP+R+ Sbjct: 344 TSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374 >gi|251771681|gb|EES52256.1| DNA polymerase III, beta subunit [Leptospirillum ferrodiazotrophum] Length = 391 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 89/357 (24%), Positives = 156/357 (43%), Gaps = 27/357 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEI---KASGPEIEITGA 56 M +E+S LE L + +RKN +S H+LL+A DGL + +++G + + Sbjct: 1 MDFLIEQSVFLEGLEKVSVLSDRKNIALLSSHILLEAGEDGLTLLSFDQSAGGRLRV--- 57 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 PA V G TV ++ IVR+L G F +E + + F+L+ Sbjct: 58 -PAKVTTPGQATVLGKKIFQIVRELAPGMIHVFREEGGRKGMTTVEKDSAVFHLKGIDPR 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH---INEEDLKLCA 173 +F S E YSF + L+ L+E+T EE Y+NG+ F + L Sbjct: 117 DFASFPEITPEYSFGVPIRDLQRLIEKT-LPFVVEEEGTYMNGVLFQRERTSGGKAALNV 175 Query: 174 VATDGHRLAVAE--------VDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSL 223 V TDG+ L + +D+ Q K ++ R+ +++R+L SKD + V + Sbjct: 176 VGTDGNGLHHGQIPLGEEGGIDLSEQGEK--RFLIKRRHAADLMRMLETDSKDEKLTVEI 233 Query: 224 SESRIHLNIESLSMS--VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 S + + L VRL+D FPNY++V P + + + + R ++S Sbjct: 234 SVNPRYAQFRWLGFYFFVRLLDLRFPNYRDVFPEEHSVTVDMGREAATSIIRRAGLISEK 293 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 ++ ++L+ + MT N D+G + E P F+ + L +++ + Sbjct: 294 NVE-LELTWDERAVTMTSQNIDIGDSREQTPAIVTGPPSGFFFSIQSLSKLLGVVGG 349 >gi|213690931|ref|YP_002321517.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522392|gb|ACJ51139.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320456977|dbj|BAJ67598.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 374 Score = 94.0 bits (232), Expect = 3e-17, Method: Compositional matrix adjust. Identities = 90/391 (23%), Positives = 181/391 (46%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + + P+ V L+A +G L+ A EI I A Sbjct: 1 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIEGTLQFSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L+ ++ ++ + G+ + I+ G S F LQ P++E+P Sbjct: 61 VDEAGSVLVQGKLLADITKSLR--SEKTYLVTD--GSTLTITSGKSKFTLQLMPDTEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A++ EE R L G+ + K+ +TD R Sbjct: 117 LPVVPAMLG-QVDAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIESLS 236 LA A Q + + + R G +L+ + + D + L ++S L E+ Sbjct: 174 LARATFTWTPQNPDVDTTTLVR---GSLLKDVARALDEHQNIRLDFDADSPTLLGFENAG 230 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + + VN +L A+ RV++++ R ++++ + + Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAE-RNAPIRMTFTGQE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ + D +A E++++ + + + FN YL E + V + V ++ + Sbjct: 290 VALSAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGL-----SAVTEPFVRIKMTTPV 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V G+ + + D ++ Y+L+PMR Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372 >gi|291547606|emb|CBL20714.1| DNA polymerase III, beta subunit [Ruminococcus sp. SR1/5] Length = 371 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/382 (21%), Positives = 177/382 (46%), Gaps = 46/382 (12%) Query: 17 ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76 A + + K T+P+ +L+ A ++ + E+ I + +++ G + + A + Y+ Sbjct: 17 ALKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVEGTIEEKGKVALDAKIFYE 76 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF--PSTKEEEYVY------ 128 I+R+L D +V I D + +++F P E++ Y Sbjct: 77 IIRRLPDN-------------DVTIKTDDKYAATITCEKAKFNIPGKSGEDFAYLPMIEK 123 Query: 129 --SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 ++ LK ++ +T F++A E + G F I LK+ V+ DGHR+++ ++ Sbjct: 124 DEPLTISQYTLKEMIRQTIFSIAVNENNKLMTGELFEIKNNCLKV--VSLDGHRISIRKM 181 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + + ++VP K + E+ +ILS + D V + +++ I + + RLI+GE Sbjct: 182 SLKKDYSDR-KVVVPGKTLSEVSKILSGEVDDQVSIYFTKNHILFEFDQTMVVSRLIEGE 240 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDM 304 + ++ + +L++N +DR +++ V + + ++++ D + + +D+ M Sbjct: 241 YFRIDQMLSSDYETKLKINKKEFLDCIDRATLLVREVDKKPIIINITDDDMELRIDSA-M 299 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSVFIRGKD 363 G E +++ + I FN K+L++ + V+DDE V L + + FIR Sbjct: 300 GSMNEEIDIEKEGKDIMIGFNPKFLIDAL------RVIDDETVTIYLVNPKAPCFIR--- 350 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 D++ N Y+++P+ I Sbjct: 351 -------DDEENYTYLILPVNI 365 >gi|253734730|ref|ZP_04868895.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH130] gi|253727295|gb|EES96024.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH130] Length = 161 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 51/175 (29%), Positives = 101/175 (57%), Gaps = 14/175 (8%) Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 +L D+ ++V + + I ++ + +L+DG FP+Y+ V+P + DK L C L+Q Sbjct: 1 MLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQ 60 Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330 A R +I+S+ + + V+L +S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L Sbjct: 61 AFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVL 120 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++++ + + V R+ ++S ++ +D S+ +A YV+MPMR+ Sbjct: 121 DVLNALKCENV-------RMMLTDSVSSVQIEDAASQ-------SAAYVVMPMRL 161 >gi|213966240|ref|ZP_03394424.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46] gi|213951092|gb|EEB62490.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46] Length = 396 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/405 (23%), Positives = 174/405 (42%), Gaps = 36/405 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I + D+ + R + + T P+ ++ A+D L++ E+ I A Sbjct: 6 VRIRAAKDDLAGAVSWVARNLPARPTQPILRGMIFLADDNGLQLAGYDYEVSTQIRISAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 VD G V+ L+ DIV KL + K+ E+ GT+V + G S F L S + Sbjct: 66 VDEPGRFAVNGKLVSDIVSKLPN-------KQVEMHFDGTKVIVRCGSSRFELPSLTLED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P E + +++L + + A +E L GI ++ L ATD Sbjct: 119 YPQLPEAPAATG-TVDAALLAEAIGQVAVAAGKDESLPMLTGIRMETEGNEVTLA--ATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL------------SE 225 RLAV + +++P K E R L + SS V+L SE Sbjct: 176 RFRLAVRSFEWEQVPEGETKLLIPAKTFAETARTLDTT-SSEPVTLAFGDGSDDREVGSE 234 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + + + RL+D EFP ++ ++P + L+ A+ RVS+M+ Q Sbjct: 235 GLLAILADPRRTTTRLLDAEFPKFRPLLPKQHSSMAVARVDQLQDAIRRVSLMADHGAQ- 293 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 +++ S ++ ++ ++G A E++ + P+ I FN +YLLE + + S V Sbjct: 294 IRMDFSDGQVVLSAHGDEVGHAEETVACNFYGEPLLIAFNPQYLLEGLSAVRSHRV---- 349 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 ++ S ++ I + + +D + + Y+LMP+R+ Sbjct: 350 LLGFTQPSRPAILIPEPEAIPELGEDGFYPTPETDFTYLLMPVRL 394 >gi|50953927|ref|YP_061215.1| DNA polymerase III subunit beta [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950409|gb|AAT88110.1| DNA polymerase III, beta subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 381 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 163/348 (46%), Gaps = 21/348 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK R E + A +++ ++ T+P+ VL++ + L++ + E+ I A Sbjct: 1 MKFQANRDVFSEAVSFAVKLLPQRTTLPILSGVLIETTENGLQLSSFDYEVSAQTKIAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + VS LL +I KL + A + F E +++ + G +NF L S P E+PS Sbjct: 61 VEETGRVLVSGRLLAEIAAKLPN-APVQFSTEE---SKIIVKAGSANFTLLSMPVEEYPS 116 Query: 121 ----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + E V + E A +V + A + +++ + G+ + + L L VAT Sbjct: 117 IPDVSGEAGLVPAEEFAEAVAQ-----VGVAASRDDVTPVITGVQLEVGDNTLGL--VAT 169 Query: 177 DGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR--IHLN 231 D +R+AV E+D + + + +VP + + EI + L S S+ ++ + R I Sbjct: 170 DRYRVAVREIDWDNGTTLGETKTALVPARTLTEIGKTLGHSGTVSIAITNRDDRELIAFT 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + +++ LI G FP + + P + +N L +A RVS++ R A++ + + Sbjct: 230 DDRKTVTSLLIKGNFPPVRRLFPDQVENHAVMNTAELIEATRRVSLVLE-REAALRYTFT 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 +D L + + +A ES++ + ++LL+ + + S+ Sbjct: 289 ADGLTLEAIGSEQAQASESIDALLTGQETVVSLKPQFLLDGLGAVHSE 336 >gi|118587494|ref|ZP_01544919.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163] gi|118432144|gb|EAV38885.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163] Length = 374 Score = 94.0 bits (232), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 82/351 (23%), Positives = 168/351 (47%), Gaps = 30/351 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V+R+++ L R I K IP+ + + ++ + + S EI I + A Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 VDV-------CGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQS 112 D G I +A+ +I++ L D +IS G+++ I G S+F + Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEIS-----TEGSQIAIVGGSSDFTVAG 115 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +P + + + SS L +++ T A++ ++ R L GI F I + +K Sbjct: 116 QSADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK-- 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESR 227 AV+TD HRL+ +I K+ + ++VP KA+ E+ +L + D+ + + S+ Sbjct: 174 AVSTDSHRLS-------QRITKIGNDSQADVVVPSKALIELRALLENIDN-LNLQFDRSQ 225 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV- 286 + +++ + RL++G++P +IP + ++ L ++DR S+++ V Sbjct: 226 LLVDLGETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVA 285 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNI 336 + S+S DKL ++ ++GK +E + + + + I FN ++ + + +I Sbjct: 286 EFSISQDKLVLSTAQSEVGKVLEELLIDNFKGEDLKISFNPDFVRDALSSI 336 >gi|172039682|ref|YP_001799396.1| DNA polymerase III subunit beta [Corynebacterium urealyticum DSM 7109] gi|171850986|emb|CAQ03962.1| DNA polymerase III, beta subunit [Corynebacterium urealyticum DSM 7109] Length = 394 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 93/406 (22%), Positives = 178/406 (43%), Gaps = 40/406 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + +V + D L R + K T P+ V++ A+D LE+ E+ + A+ Sbjct: 6 VSFSVAKDDFASALAWVARALPTKPTQPILRGVMILADDDGLELSGFDREVSTRVRVNAN 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G I V+ L DIV L G +I+ G+ V + S F L + ++P Sbjct: 66 VDEPGRILVAGKLASDIVGALP-GKEITM---EYSGSTVLVRSSSSRFELPAMTIEDYPV 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V + ++ + + A ++ L GI I E++ L ATD R Sbjct: 122 LPDMPAVTG-TIDPNLFTEAISQVAIAAGKDDTLPMLTGIRMEIEGENVVLA--ATDRFR 178 Query: 181 LAV-------AEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-------SE 225 LAV A D A+ +++P + + + R L S + +++++ ++ Sbjct: 179 LAVRSFQWNPASADAKAE------LLIPARTLADTARTLDHSLNDPIEIAIGSGEDIGAD 232 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + ++ + RL+D +FP ++ ++P ++ V L A+ RVS+++ R Sbjct: 233 GLLGIVTDARRTTTRLLDADFPKFRPLLPARHNAMASVEIAPLLDAIRRVSLVAE-RNSQ 291 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 +++ L ++ D+G+A E +N Y+ P+ I FN YL + + I + + Sbjct: 292 IRMHFEESTLTLSAGGSDVGQAEEVLNCAYHGEPLTIAFNPAYLKDGLSAIHT-----ER 346 Query: 346 VVFRL-DSSNSSVFIRG-----KDKDSKNNKDNKVNAFYVLMPMRI 385 VVF S ++ I + ++ D + N Y+LMP+R+ Sbjct: 347 VVFGFTQPSRPAILIPAPAELPEAEEDGTFPDPETNFKYLLMPVRL 392 >gi|282856281|ref|ZP_06265562.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455] gi|282585858|gb|EFB91145.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455] Length = 385 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 64/411 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + +++ ++ A R+ K+T+ VL A++ TG + S Sbjct: 1 MKLEITQNEFMKYWSMAERVTGTKSTMATLASVLCVADE--------------TGVMLNS 46 Query: 61 VDVCGSITVSAH-----------LLYDIVRKLQDGAQISFFK---ENELGTEVNISHGDS 106 D+ +I V A L +V +L S F +NE GT IS G S Sbjct: 47 TDLKTTIRVKAEGATVLEPGKAILPLKVVGELFKKIVASPFTVEVDNEKGT---ISAGRS 103 Query: 107 NFYLQS-----FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161 ++ + FP+ P EE ++ A + + L E E+ YL+G Sbjct: 104 HYSFTTCNVGDFPDLPSPRAAEE---FTRVSAGELSRVLAEGGIAGAPNEDFPKYLSGGL 160 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILS--SK 215 I +L++ VATDG RL++++ I A A+ +++P K++ E RIL+ + Sbjct: 161 MQIAGGELRV--VATDGRRLSLSKTMIENADAASSAR--EMLLPLKSLEEYQRILTGFAP 216 Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 D V+V + + N+ + SVR ID +FPNY+ ++ ++ +++ + + QA+DR+ Sbjct: 217 DQEVEVLQDGAVTYFNMPGVQYSVRCIDSKFPNYERILSNTSTTQMQADRSGFMQALDRI 276 Query: 276 SIMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 +I+ + V L+LS + ++ P++G+A ES++ + P+ + FN YL+ I Sbjct: 277 NIVVGDNSRVVILTLSPGAAMELSGRAPEIGEANESVDASISGEPLKVAFNVGYLMAGIK 336 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V ++ G + + + Y+LMP+++ Sbjct: 337 AFHGSDV--------------TLAFNGAEGQMMITRPGGTDFVYMLMPIKL 373 >gi|320009751|gb|ADW04601.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC 33331] Length = 376 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/396 (23%), Positives = 174/396 (43%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSAKVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 ++ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 IEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAVLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ + K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374 >gi|145592569|ref|YP_001156866.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440] gi|145301906|gb|ABP52488.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440] Length = 377 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV VLL+ DG L++ SG + E++ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVLLRVTDGNLQV--SGFDYEVSSQVTVE 58 Query: 61 V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V D G+ VS LL +I + L +G + + G + F L + P ++ Sbjct: 59 VQGDADGATLVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P T E V + + ++ V + A +E + G+ ++ L + +ATD Sbjct: 115 P-TLPEMPVSAGTIDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGGTLAM--LATDR 171 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLA+ E++ + ++ + +VP + + + + L V ++LS E I Sbjct: 172 YRLALREIEWNPEDPEISLNALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFVG 231 Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+DG +P +++ P + + + +V + L + V RV++++ R V LS S Sbjct: 232 GPRRTTSRLLDGANYPPVRSLFPATQNAQAQVPVSALIEVVKRVALVAE-RTTPVLLSFS 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D L + + +A E+M ++ P+ I FN +YL++ + N+ + V V D Sbjct: 291 DDGLVVEAGGTEEARASEAMEATFSGDPLTIGFNPQYLIDGLSNMGTQFAVLSFV----D 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 + +V S +D +V Y++MP+R+ Sbjct: 347 AFKPAVI-------SPVGEDGEVVPGYRYLIMPIRV 375 >gi|238061914|ref|ZP_04606623.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149] gi|237883725|gb|EEP72553.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149] Length = 377 Score = 93.6 bits (231), Expect = 4e-17, Method: Compositional matrix adjust. Identities = 92/396 (23%), Positives = 185/396 (46%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV V+L+ DG L++ SG + E++ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQV--SGFDYEVSSQVTVE 58 Query: 61 V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V D G+ VS LL +I + L +G + + G + F L + P ++ Sbjct: 59 VQGDADGAALVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + ++ + V + A +E + G+ ++ +L + +ATD Sbjct: 115 PALPDMPE-SAGTVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGGNLAM--LATDR 171 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLA+ E++ ++ + +VP + + + + L V ++LS E I + Sbjct: 172 YRLALREMEWHPDDPEVSINALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFSG 231 Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+DG +P +++ P S++ E R+ + L + V RV++++ R V LS S Sbjct: 232 GTRRTTSRLLDGANYPPVRSLFPASHNAEARLAVSTLIEVVKRVALVAE-RTTPVLLSFS 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 SD L + + +A E+M + P+ I FN +YL++ + N+ + + V D Sbjct: 291 SDGLVVEAGGTEEARASEAMEATFTGDPLTIGFNPQYLIDGLANLGAQFALLSFV----D 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 + +V S +D +V Y++MP+R+ Sbjct: 347 AFKPAVI-------SPAGEDGEVIPGYRYLIMPIRV 375 >gi|159035676|ref|YP_001534929.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205] gi|157914511|gb|ABV95938.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205] Length = 377 Score = 93.6 bits (231), Expect = 5e-17, Method: Compositional matrix adjust. Identities = 93/396 (23%), Positives = 183/396 (46%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV VLL+ +D L++ SG + E++ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPSRPSVPVLAGVLLRVSDANLQV--SGFDYEVSSQVTVE 58 Query: 61 V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V D G+ VS LL +I + L +G + + G + F L + P ++ Sbjct: 59 VQGDADGAALVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P T E V + + ++ V + A +E + G+ ++ L + +ATD Sbjct: 115 P-TLPEMPVSTGTVDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGGTLAM--LATDR 171 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLA+ E++ ++ + +VP + + + + L S V ++LS E I Sbjct: 172 YRLALREMEWNPDDPEITLNALVPARTLHDTAKALGSLGGQVTMALSQGAAGEGMIGFAG 231 Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+DG +P +++ P +++ + +V + L + V RV++++ R V LS S Sbjct: 232 GTRRTTSRLLDGANYPPVRSLFPATHNAQAQVPVSALIEVVKRVALVAE-RTTPVLLSFS 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D L + + +A E+M + P+ + FN +YL++ + N+ + V V D Sbjct: 291 GDGLVVEAGGTEEARASEAMEATFTGDPLTVGFNPQYLIDGLSNMGTQSAVLSFV----D 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 + +V S +D +V Y++MP+R+ Sbjct: 347 AFKPAVI-------SPVGEDGEVVPGYRYLIMPIRV 375 >gi|210614349|ref|ZP_03290168.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787] gi|210150693|gb|EEA81702.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787] Length = 369 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 87/384 (22%), Positives = 183/384 (47%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++ + + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIICTKSNLAKGVNIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D +I+ ++ L T + + F + + +F Sbjct: 61 IIQKGVIAIDAKIFSEIVRKLPDN-EITIESDSNLQTMITCEK--AKFSISAKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK L+ +T F++A + + G F I+E LK+ V+ DGHR Sbjct: 118 LPYIEKAESITLSQFTLKELIRQTIFSIADNDSNKLMTGELFEIDENILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ + ++ + ++VP K + E+ +ILS + DS+V +S +++ + ++ + Sbjct: 176 ISIRKTELTKN-YQSRKVVVPGKTLMEVSKILSGEADSTVCLSFTDNHVVFEFDNTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+GE+ ++ + ++++N L +DR +++ + + D++ Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVKINKKELLSCIDRATLLVKEGDKKPIIINIMDEVMELR 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +G E + + + I FN K+L++ + I D+EV L ++ + FI Sbjct: 295 IKSQLGSMNEEIMISKEGKDLLIGFNPKFLIDALRVIE-----DEEVTIYLMNAKAPCFI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 R D K + Y+++P+ Sbjct: 350 R----------DEKESYVYLILPV 363 >gi|24212702|ref|NP_710183.1| DNA polymerase III subunit beta [Leptospira interrogans serovar Lai str. 56601] gi|45655916|ref|YP_000002.1| DNA polymerase III subunit beta [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193333|gb|AAN47201.1|AE011192_2 DNA polymerase III beta subunit [Leptospira interrogans serovar Lai str. 56601] gi|45599149|gb|AAS68639.1| DNA polymerase III beta subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 373 Score = 93.2 bits (230), Expect = 6e-17, Method: Compositional matrix adjust. Identities = 93/402 (23%), Positives = 188/402 (46%), Gaps = 46/402 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V S+ L+ + +I + + ++ ++A + A+ EI I ++PA Sbjct: 1 MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++++ A L + + F++ L E + S+ + + ++++ S Sbjct: 61 VTQEGNVSLPAKQLSSFFKTIH-------FEDTNLSLEESDSNSSIVYITDASGKNDYKS 113 Query: 121 TK--------------EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 + V SF S+++ +++ +T +A+A E+ R+ NG++ N Sbjct: 114 KISGMDADEIKTISKIDSSQVSSF--PSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNG 171 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 + KL V TDG RL E + + + SIIVP KA+ EI +++++ + + L + Sbjct: 172 D--KLIFVGTDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEVG-NIGLIDG 228 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I+++ ++ + +LI+G FPNY+ VIP + ++ + ++ +V + + V Sbjct: 229 QIYVSANNIELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQV 288 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 +L+ S + L + +G + S+N + Y+ + I F +YL++I +I D+ Sbjct: 289 RLTFSKNNLNLFAQT--LGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DN 341 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY-VLMPMRI 385 EV +NS V KD F V+MPM++ Sbjct: 342 EVKIEFSDANSPVIF----------KDPSDPEFISVIMPMKL 373 >gi|332702339|ref|ZP_08422427.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str. Walvis Bay] gi|332552488|gb|EGJ49532.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str. Walvis Bay] Length = 387 Score = 93.2 bits (230), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 99/398 (24%), Positives = 181/398 (45%), Gaps = 35/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R DI+E L + II K + L+A DG L+I A+ +E G+ A Sbjct: 1 MFVRVFRDDIIEGLQKSASIIPAKTGAAFLRTIWLKAEDGALKIMATDSNLEFCGSYKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G V YD++RKL G QI+ + +E I G + L S F Sbjct: 61 IVQEGLAGVQGRAFYDLMRKLPSG-QIT-IRTDEATKNAIIEQGSRKYKLPVNDPSWFQK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHI-NEEDLKLCAVAT 176 + + L+ L++R F ++ E E +N + + E+ +++C + Sbjct: 119 FSDYPESGGVFWSGDFLQELIDRVAFCISDEDTMEAIACMNMVGKDVEGEKVVEVCGL-- 176 Query: 177 DGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-- 232 +GH+ A+ D +A + I+V +K V E+ + L++ + +++++S+ R+ Sbjct: 177 NGHQFAMVRFVNDDIAGLLPENGILVQKKYVSELKKWLTADE--IELAISDKRLFCRTGD 234 Query: 233 --ESLSMSVRLIDGEFPNYQNV---IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 E+ S+ + ++P+YQ + + L T + +++DR+ I +S + V Sbjct: 235 RRETFSLPLSYY--QYPDYQGFLAKVQGNGASSLSFARTEMIESLDRIMIFNSETNRCVN 292 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + +L + D+G+A ES+ V ++ I F + L+EI+ + SS D V Sbjct: 293 FVFNGQELTLFSQGQDVGQASESIQVDFSGELEKIAFPTRNLIEILGHYSS-----DRVS 347 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F L S IR S+ +KD V ++MPM+I Sbjct: 348 FTLTGSEGPCGIR-----SEQDKDYLV----IIMPMKI 376 >gi|282863319|ref|ZP_06272378.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] gi|282561654|gb|EFB67197.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] Length = 376 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 171/396 (43%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 ++ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 IEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPTMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + G+ D++ N K Y++MP+R+ Sbjct: 343 TTSTKPALLSGRPAVDAEANDAYK----YLIMPVRL 374 >gi|258511078|ref|YP_003184512.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477804|gb|ACV58123.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 369 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 86/337 (25%), Positives = 162/337 (48%), Gaps = 10/337 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+S + L R+ +++ V VL++A+ G + A ++ + + AS Sbjct: 1 MRCLIEQSVLEPTLSAMARVAPVRSSAAVLQGVLVEADRGQVTFSAYDYDVALRMTMEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A L ++VR+L G I+ + L +++ ++ L F EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDVD--ATHAELHGFDPEEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDG 178 + + EL++ L VE +A A + R L G+ H+ +D +L AT+ Sbjct: 119 ELPDMRGIAPVELSAKTLVAAVESVGYAAAKRDPTRPILEGV--HVACDDGRLVWTATNA 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 RL + + ++ VPR+ + E+LR+L ++ ++V+V S S + + + + Sbjct: 177 LRLVQVKQAVDGELPI--RFTVPRRGLSELLRLLEDEEETTVQVYQSASYVMFAWDHVQL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL G +P+ VIP E RV L QAV+R +I++ +V L LS+ LCM Sbjct: 235 YTRLYQGGYPDVTRVIPTEFIAECRVERDRLEQAVERTTILAENEHHSVTLELSNGALCM 294 Query: 298 TVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEII 333 + D G+A E + + + + + N +++LE++ Sbjct: 295 SSRARDRGQAREEVPILESSGEEVRVALNARFVLEML 331 >gi|255326480|ref|ZP_05367562.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296] gi|255296520|gb|EET75855.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296] Length = 374 Score = 92.8 bits (229), Expect = 7e-17, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 178/394 (45%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L+ A+ G + I + E I A Sbjct: 1 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSAHQVIAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V +L +I R L + A + F + + + I +NF L P ++P Sbjct: 61 VEAEGVCLVPGKILAEICRSLPN-APVEFTADESV---IRIHCRSANFQLAGMPVVDYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V++ A++ +E L GI IN + + L +ATD +R Sbjct: 117 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 173 Query: 181 LAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNI 232 LA+ E+ D+ A ++++ K V E+ LS S D S+ + + I Sbjct: 174 LAMREIKWNPVNPDVQA------AVLLKAKTVSEVGSTLSGSGDLSIALPAAGELIGFAA 227 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + L+DG++PN + + P V ++L +A R+S+++ R ++L + Sbjct: 228 GTRRTTSVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVAE-RNTPLRLKFTQ 286 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351 + + D +A E++ + + + + +N YL + + +V E V F Sbjct: 287 GSVAIDAGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGL------KVFGTEFVRFSFT 340 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G+D+ +D++ N Y+LMP+R+ Sbjct: 341 DAPKPAVISGQDEPLA--EDDR-NYRYLLMPVRL 371 >gi|297200941|ref|ZP_06918338.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] gi|197716888|gb|EDY60922.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] Length = 376 Score = 92.8 bits (229), Expect = 8e-17, Method: Compositional matrix adjust. Identities = 97/396 (24%), Positives = 178/396 (44%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G++ VS LL DI R L + + E+ G + G S F L + P E Sbjct: 61 VEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + + V + + A ++ L G+ I + + L +TD Sbjct: 114 YPALPQMPSATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R AV E + + ++ +VP K + + + L+S D SV ++LS E I Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-SVILALSGSGAGEGLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+ P Y+++ P + + +AV RV++++ R V+LS Sbjct: 230 GAGRRTTTRLLEGDLPKYRSLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + + D +A+E ++ + + I FN +LL D +S+ +D V Sbjct: 289 QGVLILEAGSSDDAQAVERVDAHLEGDDVSIAFNPTFLL---DGLSA---IDSPVAQLSF 342 Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 +S + GK D++ ++ K Y++MP+R+ Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374 >gi|305681648|ref|ZP_07404454.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC 14266] gi|305658808|gb|EFM48309.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC 14266] Length = 418 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 30/398 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K PV +L+ A+D LE E+ IPA V+ Sbjct: 32 VAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVNQP 91 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I V+ L+ DI L + + F + G+ V + G S F L S P ++P+ Sbjct: 92 GRIAVAGKLIADITATLPN-KPVEIFVD---GSTVQLKCGSSRFELPSIPLDDYPTLPTL 147 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 V + + + V + A ++ L G+ I ED+ L ATD RLA+ Sbjct: 148 PEVTG-AINPRLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITLT--ATDRFRLALR 204 Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235 + + +++P K E R L + + V++++ +E +++++ Sbjct: 205 RFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVDAR 264 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL+D EFPN ++P + V ++L+ A+ RV++++ Q +++ + ++ Sbjct: 265 QTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVADRNAQ-IRMHFTPGEV 323 Query: 296 CMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DS 352 ++ D G A ES+ + E + I FN YL + + + + VVF +S Sbjct: 324 LLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHVVRT-----QRVVFGFTES 378 Query: 353 SNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 S ++ I +K + N D + Y+LMP+R+ Sbjct: 379 SRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 416 >gi|225020876|ref|ZP_03710068.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii ATCC 33806] gi|224946358|gb|EEG27567.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii ATCC 33806] Length = 396 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 30/398 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K PV +L+ A+D LE E+ IPA V+ Sbjct: 10 VAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVNQP 69 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I V+ L+ DI L + + F + G+ V + G S F L S P ++P+ Sbjct: 70 GRIAVAGKLIADITATLPN-KPVEIFVD---GSTVQLKCGSSRFELPSIPLDDYPTLPTL 125 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 V + + + V + A ++ L G+ I ED+ L ATD RLA+ Sbjct: 126 PEVTG-AINPRLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITLT--ATDRFRLALR 182 Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235 + + +++P K E R L + + V++++ +E +++++ Sbjct: 183 RFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVDAR 242 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL+D EFPN ++P + V ++L+ A+ RV++++ Q +++ + ++ Sbjct: 243 QTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVADRNAQ-IRMHFTPGEV 301 Query: 296 CMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DS 352 ++ D G A ES+ + E + I FN YL + + + + VVF +S Sbjct: 302 LLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHVVRT-----QRVVFGFTES 356 Query: 353 SNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 S ++ I +K + N D + Y+LMP+R+ Sbjct: 357 SRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 394 >gi|119394196|gb|ABL74460.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 195 Score = 92.8 bits (229), Expect = 9e-17, Method: Compositional matrix adjust. Identities = 57/204 (27%), Positives = 116/204 (56%), Gaps = 9/204 (4%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + + L AVATDG+R+ + + I + S+I+PRK + + ++L+ Sbjct: 1 RYYLNGML--LKKVKTLLYAVATDGYRMGITKTSIQEDVIPF-SVIIPRKGIVGLYKLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 K ++ + ++ I + IE L +++LI+G +P+Y +++ + + +N L+Q++ Sbjct: 58 IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYISILLKHKNCPIILNSQQLKQSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I++S +++ + ++K + DN + G A +S + Y ++I N Y+L+I+ Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEEEG-AEDSFKINYFNNEVEISINVYYILDIL 176 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + ISS + L+ SN+S+ Sbjct: 177 NVISS-----KNIFLFLNESNNSI 195 >gi|166032889|ref|ZP_02235718.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC 27755] gi|166027246|gb|EDR46003.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC 27755] Length = 369 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/384 (22%), Positives = 184/384 (47%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD+++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIVCNKSDLVKGVNIVSKAVPGKTTMPILECILIDATTDIIKLTANDMELGIQTEIAGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D ++S ++ L T I + F + P +EF Sbjct: 61 IIDRGMIAIDAKIFSEIVRKLPDN-EVSIETDDRLQT--TIVCEKAKFDISGKPGNEFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S ++ LK ++ +T F++A E + G F I + L++ ++ DGHR Sbjct: 118 LPIIEKDDSIVISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNVLRVASL--DGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ ++ ++VP K + EI +ILS + +S V++S + + I ++ + Sbjct: 176 ISIRKIELKNPVSDY-KMVVPGKTLIEISKILSGEAESMVEISYTNNHIVFEFDNTIVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G++ ++ D ++R+N +DR +++ + + D++ Sbjct: 235 RLIEGDYFKIDQMLSSDYDTKVRINKKEFLNCIDRATLLIKEGDKKPIIIDIQDEMMELK 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +G E + + + + I FN K+L++ + I D+EV L ++ + FI Sbjct: 295 IKSQIGSMNEEIMISKDGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCFI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 KD + Y+++P+ Sbjct: 350 ----------KDETESYIYLILPV 363 >gi|225570326|ref|ZP_03779351.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM 15053] gi|225160858|gb|EEG73477.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM 15053] Length = 406 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 87/384 (22%), Positives = 181/384 (47%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 39 MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATADIIKLTANDMELGIQTEIEGE 98 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D E + + I+ + F L P EF Sbjct: 99 ITERGMIAIDARIFSEIVRKLPDS---DIVIETDANLQTVITCEKAKFDLSGKPGEEFSY 155 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S E++ LK ++ +T F++A E + G F I + L++ V+ DGHR Sbjct: 156 LPIIEKEESIEISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNILRV--VSLDGHR 213 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ ++A ++VP K + E+ +ILS + +S V +S + + I ++ + Sbjct: 214 ISIRKIELKNEVAD-KKLVVPGKTLTEVSKILSGEAESMVNISYTNNHIVFEFDNTIVVS 272 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+GE+ ++ + ++R+N L +DR +++ + + D++ Sbjct: 273 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDEIMELK 332 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +G E + + + I FN K+L++ + I D+E L ++ + FI Sbjct: 333 IKSQIGSMNEEIMIEKEGKDLLIGFNPKFLIDALRVID-----DEEATLYLMNAKAPCFI 387 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 KD+ + Y+++P+ Sbjct: 388 ----------KDDAESYIYLILPV 401 >gi|296120310|ref|YP_003628088.1| DNA polymerase III, subunit beta [Planctomyces limnophilus DSM 3776] gi|296012650|gb|ADG65889.1| DNA polymerase III, beta subunit [Planctomyces limnophilus DSM 3776] Length = 377 Score = 92.4 bits (228), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 15/277 (5%) Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 V GS + L I+R+L D + N G V + G S F L + ++FP+ Sbjct: 71 VGGSALLPTQRLTSILRELTD--DTVSLEVN--GDAVWLRCGGSEFRLSAEDPADFPTAP 126 Query: 123 E---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E+Y F + + V + L++RT FA E RY L G+ I + +++ A TD Sbjct: 127 EFVEEDY---FVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRMAA--TDSR 181 Query: 180 RLAVA--EVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RLAVA + Q ++ +VP KA+ I + L + ++V +++ + I + S Sbjct: 182 RLAVAVGACSVEGQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDISIRAGRAS 241 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +L+ G FP+Y+ VIP + E+ + + AV + ++++ + V + + L Sbjct: 242 ITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFTFAEGTLR 301 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 + D+G++ + + Y + I F+ +++ + + Sbjct: 302 LASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFL 338 >gi|24753762|gb|AAN64010.1|AF434658_7 DNA polymerase III, beta subunit [Leptospira interrogans] Length = 373 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/376 (22%), Positives = 179/376 (47%), Gaps = 35/376 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V S+ L+ + +I + + ++ ++A + A+ EI I ++PA Sbjct: 1 MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++++ A L + + F++ L E + S+ + + ++++ S Sbjct: 61 VTQEGNVSLPAKQLSSFFKTIH-------FEDTNLSLEESDSNSSIVYITDASGKNDYKS 113 Query: 121 TK--------------EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 + V SF S+++ +++ +T +A+A E+ R+ NG++ N Sbjct: 114 KISGMDADEIKTISKIDSSQVSSF--PSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNG 171 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 + KL V TDG RL E + + + SIIVP KA+ EI +++++ + + L + Sbjct: 172 D--KLIFVGTDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEVG-NIGLIDG 228 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I+++ ++ + +LI+G FPNY+ VIP + ++ + ++ +V + + V Sbjct: 229 QIYVSANNIELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQV 288 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 +L+ S + L + +G + S+N + Y+ + I F +YL++I +I D+ Sbjct: 289 RLTFSKNNLNLFAQT--LGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DN 341 Query: 345 EVVFRLDSSNSSVFIR 360 EV +NS + + Sbjct: 342 EVKIEFSDANSPIIFK 357 >gi|328476246|gb|EGF46930.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 334 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 66/272 (24%), Positives = 136/272 (50%), Gaps = 13/272 (4%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G I + A +IV++L + K+N + I+ G S F ++ + +P E Sbjct: 26 TGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGEDANNYPRLPE 82 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + + + VL+ L+ +T A++T+E R L G+ I + +L AVATD HRL+ Sbjct: 83 ITADEALTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVAVATDSHRLSQ 140 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + + A II+P K++ E+ R+L + +++ ++E+++ + RL++ Sbjct: 141 RTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFGQTAFYSRLLE 200 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKLCMTVD 300 G +P+ +IP S++ + + L ++ R S++ SS + + L++ K + + Sbjct: 201 GNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNIGEQKATIYGN 260 Query: 301 NPDMGKAIESMNVYYNECP---MDICFNYKYL 329 +PD+G E ++ +N+ ++I FN Y+ Sbjct: 261 SPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 290 >gi|153815424|ref|ZP_01968092.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756] gi|317500886|ref|ZP_07959098.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089212|ref|ZP_08338114.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|145847283|gb|EDK24201.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756] gi|316897766|gb|EFV19825.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|330405764|gb|EGG85293.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 369 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 80/355 (22%), Positives = 171/355 (48%), Gaps = 33/355 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + + + + K T+P+ +L+ A+ ++++ A+ E+ I +I Sbjct: 1 MKIICTKQNLAKGVSIVSKAVPSKTTMPILECILIDASTDVIKLTANDMELGIETSIDGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G + ++A + +IVRKL D I + + + I+ G + F + S P EF Sbjct: 61 IIERGILALNAKIFAEIVRKLPDNEIII---DTQGDNQALITGGKAKFKIASLPGDEFSY 117 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ ++++++ E LK ++ +T F++A + + G F I + LK+ V+ D Sbjct: 118 LPNIEKDDFITVSEFT---LKEVIRQTIFSIADSDTNKMMTGELFEIEDNILKV--VSLD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 GHR+++ ++++ A +IVP K + EI +I+ + ++ V +S +++ I + Sbjct: 173 GHRISIRKIELKDSYAP-KKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTI 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLI+GE+ ++ + ++++N L + +DR +++ DK Sbjct: 232 VVSRLIEGEYFRIDQMLSSDYETKVKINKRELLECIDRATLLIK----------EGDKKP 281 Query: 297 MTVDNPD----------MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +D D +G E + + I FN K+L+E + I +EV Sbjct: 282 LIIDIRDESMEFKIKSQVGSMDEDIMCIKEGKDLLIGFNPKFLIEALRVIEDEEV 336 >gi|237784639|ref|YP_002905344.1| DNA polymerase III subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237757551|gb|ACR16801.1| DNA polymerase III, beta subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 394 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 103/411 (25%), Positives = 186/411 (45%), Gaps = 58/411 (14%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASVDV 63 V + D+ L R + K T P+ V++ A+D GLL +G + E++ + S +V Sbjct: 10 VAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLL---LAGFDYEVSTRVRISAEV 66 Query: 64 C--GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115 G + V+ L DI+ L IS GT+V+++ G SNF L + +PE Sbjct: 67 LEPGQVLVAGKLANDIIGSLPHKDVAISVD-----GTKVHVTCGQSNFELPAMTIEDYPE 121 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 PS EE + + V + + A ++ L GI + +++ L A Sbjct: 122 --LPSLPEE----TGHIDPHVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDNVVLAA-- 173 Query: 176 TDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESR 227 TD RLAV E D+ A+I ++P + + + R L ++ + +++++ ++ Sbjct: 174 TDRFRLAVREFTWEPSSPDVDAEI------LIPARTLADSARTLDTRLNDPIQLAMGAAQ 227 Query: 228 -------IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + E+ + RLID +FP ++ ++P S+ V L A+ RVS+++ Sbjct: 228 DVGKDGLLGIVSENRQTTTRLIDADFPKFRPLLPKSHSSMAIVEIAPLLDAIRRVSLVAE 287 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 Q VKL S D+L ++ + G A E++ + P+ I FN YL E + +I + Sbjct: 288 RNAQ-VKLEFSEDQLVLSAGGSEAGTAEETLPAQFAGEPLLIAFNANYLKEGLASIDT-- 344 Query: 341 VVDDEVVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385 VVF S ++ I + + + D + Y+LMP+R+ Sbjct: 345 ---KNVVFGFTQPSRPAILIPEPETMPEQDSDGQFPTPSTYFTYLLMPVRL 392 >gi|255283815|ref|ZP_05348370.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM 14469] gi|255265698|gb|EET58903.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM 14469] Length = 367 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 85/386 (22%), Positives = 189/386 (48%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++++L+ + + + K T+P+ +L+ A G ++ + E+ I + S Sbjct: 1 MKIVCQKNELLKSVNIVMKAVPSKTTMPILECILIDATRGEIKFTTNDMELGIETVVNGS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I+RKL + +++ +N+L + I + F + ++P Sbjct: 61 ILEKGKIALDARLFSEIIRKLPEN-EVTIETDNKL--QATILCEKAQFSISGKDGEDYPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S ++ LK ++++T F++A E + G F I++ LK+ V+ DGHR Sbjct: 118 LPFVEKDNSICISQFTLKEVIKQTIFSIAQNENNRMMTGELFEISDNILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ K I+VP K + EI +ILS + + V + +++ I ++ Sbjct: 176 ISIRKIELKENYEK-KKIVVPGKTLIEISKILSGETEDMVNIYFTKNHILFEFDNTIAVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + +L++N L +DR +++ + + + +S + + Sbjct: 235 RLIEGEYFRIEQMLSSDYETKLKINKKELLNCIDRATLLIKEGDKKPIIIGISDTSMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSV 357 + N +G E +++ + I FN ++L++ + V+DDE + L + + Sbjct: 295 I-NSQIGSMNEQISIEKEGKDILIGFNPRFLMDAL------RVIDDETITIYLVNPKAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FIR D+ + Y+++P+ Sbjct: 348 FIR----------DDAESYIYLILPV 363 >gi|229133511|ref|ZP_04262338.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196] gi|228649911|gb|EEL05919.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196] Length = 393 Score = 92.0 bits (227), Expect = 1e-16, Method: Compositional matrix adjust. Identities = 73/279 (26%), Positives = 140/279 (50%), Gaps = 22/279 (7%) Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 L +EFP+ + ++ + L + ++T FA A E R L G+ F I+ L Sbjct: 131 LNGLSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRRVLTGVHFVIDHNKL 190 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +CA ATD HRLA+ E+ I + AK+ + IVP + E+L++++S + V + LSES I Sbjct: 191 -ICA-ATDSHRLALREIPISSH-AKL-NCIVPNSTISELLKLMNSNSNLVYIYLSESHII 246 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKL 288 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L Sbjct: 247 FKFGTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNL 306 Query: 289 SLSSD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + + ++ + +GK E+ + + E ++I F+ +Y+++ + I +D Sbjct: 307 EIIDECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDR 361 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V S + I ++ + A Y++ P+R Sbjct: 362 VTLSFGGSMRPILIEAGEQSA---------AVYLISPVR 391 >gi|302864510|ref|YP_003833147.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC 27029] gi|315500820|ref|YP_004079707.1| DNA polymerase iii, beta subunit [Micromonospora sp. L5] gi|302567369|gb|ADL43571.1| DNA polymerase III, beta subunit [Micromonospora aurantiaca ATCC 27029] gi|315407439|gb|ADU05556.1| DNA polymerase III, beta subunit [Micromonospora sp. L5] Length = 377 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 90/396 (22%), Positives = 184/396 (46%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV V+L+ DG L++ SG + E++ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQV--SGFDYEVSSQVTVE 58 Query: 61 V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V D G+ VS LL +I + L +G + + G + F L + P ++ Sbjct: 59 VQGDADGAALVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E + + ++ + V + A +E + G+ ++ + + +ATD Sbjct: 115 PTLPEMPE-SAGTVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGSTMAM--LATDR 171 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLA+ E++ ++ + +VP + + + + L V ++LS E I + Sbjct: 172 YRLALREMEWNPDDPEISLNALVPARTLHDTAKALGPLGGHVTMALSSGGAGEGMIGFSG 231 Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+DG +P +++ P ++ E RV L + V RV++++ R V LS S Sbjct: 232 GTRRTTSRLLDGANYPPVRSLFPADHNAEARVAVAALIEVVKRVALVAE-RTTPVLLSFS 290 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +D L + + +A E+M ++ P+ I FN +YL++ + N+ + ++ +D Sbjct: 291 ADGLVVEAGGTEEARASEAMEATFSGEPLTIGFNPQYLIDGLANLGAQHA----LLRFVD 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385 + +V S +D +V Y++MP+R+ Sbjct: 347 AFKPAVI-------SPAGEDGEVIPGYRYLIMPIRV 375 >gi|322379378|ref|ZP_08053749.1| DNA polymerase III subunit beta [Helicobacter suis HS1] gi|322380445|ref|ZP_08054646.1| DNA polymerase III subunit beta [Helicobacter suis HS5] gi|321147127|gb|EFX41826.1| DNA polymerase III subunit beta [Helicobacter suis HS5] gi|321148196|gb|EFX42725.1| DNA polymerase III subunit beta [Helicobacter suis HS1] Length = 363 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 70/284 (24%), Positives = 134/284 (47%), Gaps = 10/284 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + + +E++ + E L + +RK+ ++ H+ L+A LL ++A+ E+ + + AS Sbjct: 3 LHLMIEKTRLEEALKNLIAFTDRKDLTNITSHICLEAKGDLLRLEANDLEMGLCLNLNAS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G T +A DI KL+ G KEN V+IS S F L F +++FP+ Sbjct: 63 ILEEGGATFNAKHFLDIASKLEQGELTLQTKEN----YVHISFKRSKFKLPLFDKADFPT 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + L ++ ++T +Y G+ + +L VATD R Sbjct: 119 FPSFEDLPFVHFSDTTLGEYFKKLTHVISTNASKYEFGGVLLVFKD---RLELVATDTRR 175 Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237 LA+ ++D + I+P++A+ EI ++ S D + S + S+ + Sbjct: 176 LALVQMDPDNMPTTKTTQEFILPKRAMLEISKLFESDFDMLYETHDQPSMLFFKNASMVL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 +LI G++PNYQ +IP +L ++ ++A+ + +SS Sbjct: 236 YSKLISGKYPNYQAIIPSEFTHQLELDTQKFKEAIQITNALSST 279 >gi|255323606|ref|ZP_05364736.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277] gi|255299320|gb|EET78607.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277] Length = 355 Score = 92.0 bits (227), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 166/342 (48%), Gaps = 19/342 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++ + ++ ++ +E+K+ ++ H+ + A DG+L IKA+ EI + + ++ Sbjct: 1 MKVAINKNALESIVTNSNSYLEKKDLSAITSHIFIGAKDGILNIKATDHEIGLAYEL-SN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + G+ T + L DI+R L+D +I+ + + I +S + L + +F Sbjct: 60 VKIMDEGNATANGKKLLDIIRSLKD-EEITL---ETVNNYLYIKQKNSKYKLPMYKFEDF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E FE+ + +L +++ ++ ++ LNG I + + + V TD Sbjct: 116 PNFPTVENKNKFEVDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VGTDT 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL+V + Q S+I+P+KA+ EI ++ K +++ ++ + + Sbjct: 174 KRLSVFRFETPTQ--SEFSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANFEFF 228 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCM 297 +LI+G FP+Y VIP + LR++ + + + VSI+S S +I ++S + + Sbjct: 229 TKLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISESTKIVFAPQTISFESIVE 288 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 DN + IE E + + +YLL+ + NI + Sbjct: 289 --DNSEAKTTIEFATGLEEEIYVGV--KNRYLLDFLQNIEEE 326 >gi|291333916|gb|ADD93596.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 156 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 50/137 (36%), Positives = 87/137 (63%), Gaps = 3/137 (2%) Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P S+FPS ++ S +++SS L +++ T AMA +++RYYLNG + + LC Sbjct: 2 PASDFPSIDSADFSSSIKISSSALADMIGSTSVAMAAQDVRYYLNGCL--VETKGNALCV 59 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V+TDGHRLA + I + + +IVPRKAV E+ +I+SS D + +++S+++I++ Sbjct: 60 VSTDGHRLAFTKTSIDG-LKEDFRVIVPRKAVMELQKIISSNDEEITLNVSQNQINVLGS 118 Query: 234 SLSMSVRLIDGEFPNYQ 250 S + +LI+G +P+Y+ Sbjct: 119 VFSFTSKLIEGNYPDYE 135 >gi|212715152|ref|ZP_03323280.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM 16992] gi|212661833|gb|EEB22408.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM 16992] Length = 386 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 96/392 (24%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ V L+A DG L++ A I I A Sbjct: 13 MKVEVNSQALADAVAWTTRVIDARPASPILAGVRLEAIDGTLQLSAFNYAISARHHIEAG 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L A ++ + G+ + I+ G S F +Q P++E+P Sbjct: 73 VDEAGSVLVLGKLLADITKSLP--AAKTYLSTD--GSTMTITSGKSTFTMQLMPDAEYPD 128 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L + V + A++ EE R L GI + K+ +TD Sbjct: 129 LP----VIPSKLGQVDAQTFTQAVTQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 182 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL+ + + + + R A + ++ R L + V +E+ L E+ Sbjct: 183 RFRLSRSSFTWTPENPDTNATALVRGALLRDVARSLDEHQNIVVDFDTENPSLLGFENAG 242 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + +N +L A+ RVS+++ R ++++ +S + Sbjct: 243 RVSTSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVAE-RNAPIRMAFTSQE 301 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T D +A E +++ + + + FN YL+E + I+ + V ++ ++ Sbjct: 302 LTLTAGTADEAQAKEILDIDMDGEDITVAFNPTYLIEGLSAIA-----EPFVRMKMTTAV 356 Query: 355 SSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V G ++ DS+ + D + Y+L+PMR Sbjct: 357 KPVEFNGQQESDSEESMDYR----YLLVPMRF 384 >gi|229826863|ref|ZP_04452932.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC 49176] gi|229788481|gb|EEP24595.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC 49176] Length = 370 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 189/390 (48%), Gaps = 34/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +SD+++ + + I K T+P+ ++++ + + + A+ E+ I + Sbjct: 1 MLIKINQSDLIKSINIVIKAISTKTTLPILECIVIKTMENSIRLIANDMELGIETILSGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNFYLQSFPES 116 + GSI +++ L +IVRKL + E+ T+ N I G S F + Sbjct: 61 IIKEGSIALNSRLFSEIVRKLPNNLV-------EINTDDNYKATIKCGKSVFTISGQSIE 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP + E + S L+ LK ++ +T F+++ E + G IN +L++ +A Sbjct: 114 EFPVLPQIEKIKSITLSQFSLKEMIRQTIFSISNNENMKVMTGELIEINNNNLRI--IAL 171 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235 DGHR+++ ++ + + + + +VP K + EI +ILSS+ + V + S I + Sbjct: 172 DGHRISIRKIALKGEHENIKA-VVPGKTLSEISKILSSEIADEVTIYFSNKHIVFEFSNT 230 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDK 294 +++ RLIDGEF N +I + ++ +N L + +D + ++ + V L+++ + Sbjct: 231 TVNSRLIDGEFYNVDQMISSDYETKININRRELLENMDSALPFITEKEKKPVILNITENN 290 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSS 353 + +++ +G M + + I FN +++ + +VV+DE + L +S Sbjct: 291 MNLSIKTT-VGNMNTDMELVKEGKDILIGFNPVLIMDAL------KVVEDENIDIYLFNS 343 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + FI+ K++ + Y+++P+ Sbjct: 344 KAPCFIKNKEE----------SYLYIILPV 363 >gi|194332855|ref|YP_002014715.1| DNA polymerase III subunit beta [Prosthecochloris aestuarii DSM 271] gi|194310673|gb|ACF45068.1| DNA polymerase III, beta subunit [Prosthecochloris aestuarii DSM 271] Length = 375 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 81/358 (22%), Positives = 176/358 (49%), Gaps = 23/358 (6%) Query: 32 HVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK 91 H+ L ++G L + A+ E+ IT GS + A + + +R + D + + Sbjct: 35 HLFL--DNGSLTLYATDGELSITATTEVESTDQGSFGMKARTILEFLRSMYDTSVTFNIE 92 Query: 92 ENELGTE--VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 +L + ++IS + + ES+ K++++ L S+ L +++++T FA + Sbjct: 93 RQQLSDQGLIDISTDKGRYRIPCSFESK-QEKKDKDFDLELTLTSADLLDIIQKTIFACS 151 Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 + +R + G+ + E+ K+ AV+TDGHRL + + I++P + + IL Sbjct: 152 VDGMRPAMMGVLLEL--ENNKITAVSTDGHRLVRCIKTCESGVETKKRIVIPARVLS-IL 208 Query: 210 RILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268 + L+ D+ ++ + + + + +L + LI ++PNY+ VIP N+K + +N + L Sbjct: 209 QKLTQDDTVTLSIDTTNNSVRFVFPNLILDAALIVEQYPNYEAVIPLDNEKIVSINRSTL 268 Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYK 327 +V RV SS I +++S++ + + +N + G+ A E + Y+ + I FN K Sbjct: 269 YDSVRRVGKFSS--IGDIRISVAESVMTLMAENTNEGESAQEEIACVYSGEDLVIGFNSK 326 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + +I + + + L S ++V ++ + ++ + N ++MP+RI Sbjct: 327 FIEAALGHIET-----ETITMELSSPTTAVILKPEKEEEQQ------NLIILVMPVRI 373 >gi|291543410|emb|CBL16519.1| DNA polymerase III, beta subunit [Ruminococcus sp. 18P13] Length = 368 Score = 91.7 bits (226), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 87/368 (23%), Positives = 172/368 (46%), Gaps = 14/368 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ DI +G+ + + K+TI + ++ + +LE+ E+ I I A Sbjct: 1 MKFSCKKEDICAAIGNVSKAVSVKSTITALEGIRIKLSYTVLELTGYDLELGIRSTIEAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + CG V+A L +I RK+ D +I F+ +E+ + I+ + + + + E+P Sbjct: 61 SEDCGEFVVNARLFSEITRKMSD--EILTFETDEM-LNIRITGAVTEYCISAMSAEEYPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + F + LK+++ +T A++ E + + G F I ED V +DG+R Sbjct: 118 LPEVSDEHRFLVPQDQLKSMINQTAHAVSLNENKPVMTGALFDIT-EDGNFNMVTSDGYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV- 239 LA+ I A++ +VP + + E+ R+L +D+ + + H+ E ++V Sbjct: 177 LALRTEHI--DTAEVHRFVVPARTLSEVSRLL-KEDAKAPCGIYNNFKHIVFELGEITVF 233 Query: 240 -RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL++G+F NY+ IP E+ V L ++R +++ + + +A + + Sbjct: 234 SRLLEGDFHNYRASIPPDKRTEVIVRTRELVNCLERCALLINEKNKAPVRCVFENGTVKV 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +G +++ V + + I FN K++L D + + E D++ L N V Sbjct: 294 SCKTGIGSISDTIPVDLSGDAVTIGFNNKFML---DALRASEC--DKLRIHLSGGNRVVK 348 Query: 359 IRGKDKDS 366 I + DS Sbjct: 349 IIPPEGDS 356 >gi|283457091|ref|YP_003361654.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18] gi|283133069|dbj|BAI63834.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18] Length = 380 Score = 91.3 bits (225), Expect = 2e-16, Method: Compositional matrix adjust. Identities = 95/394 (24%), Positives = 178/394 (45%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L+ A+ G + I + E I A Sbjct: 7 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSARQVIAAD 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V +L +I R L + A + F + + + I +NF L P ++P Sbjct: 67 VEAEGVCLVPGKILAEICRSLPN-APVEFTADESV---IRIHCRSANFQLAGMPVVDYPE 122 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V++ A++ +E L GI IN + + L +ATD +R Sbjct: 123 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 179 Query: 181 LAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNI 232 LA+ E+ D+ A ++++ K V E+ LS S + S+ + + I Sbjct: 180 LAMREIKWNPTNPDVQA------AVLLKAKTVSEVGSTLSGSGNLSIALPAAGELIGFAA 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + L+DG++PN + + P V ++L +A R+S+++ R ++L + Sbjct: 234 GTRRTTSVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVAE-RNTPLRLKFTQ 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351 + + D +A E++ + + + + +N YL + + +V E V F Sbjct: 293 GSVAIDAGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGL------KVFGTEFVRFSFT 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G+D+ +D++ N Y+LMP+R+ Sbjct: 347 DAPKPAVISGQDEPLA--EDDR-NYRYLLMPVRL 377 >gi|223038521|ref|ZP_03608815.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267] gi|222880378|gb|EEF15465.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267] Length = 355 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 25/345 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++ + ++ + +E+K+ ++ H+ + A DG+L IKA+ EI + + ++ Sbjct: 1 MKVAINKNALESIVTNTNPYLEKKDLSAITSHIFISAKDGILNIKATDHEIGLAYKL-SN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPE 115 V + G+ T + L DI+R L+D +E L T N I +S + L + Sbjct: 60 VKIMDEGNATANGKKLLDIIRSLKD-------EEVTLETVNNYLYIKQKNSKYKLPMYKF 112 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +FP+ E FE+ + +L +++ ++ ++ LNG I + + + V Sbjct: 113 EDFPNFPAIENKNKFEIDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VG 170 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RL+V + Q S+I+P+KA+ EI ++ K +++ ++ + + Sbjct: 171 TDTKRLSVFRFETPTQ--SEFSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANF 225 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK 294 +LI+G FP+Y VIP + LR++ + + + VSI+S S +I ++S + Sbjct: 226 EFFTKLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISESTKIVFAPQTISFES 285 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + DN + IE E + + +YLL+ + +I D Sbjct: 286 IVE--DNSEAKTTIEFATGLEEEIYVGV--KNRYLLDFLQSIEED 326 >gi|268610502|ref|ZP_06144229.1| DNA polymerase III subunit beta [Ruminococcus flavefaciens FD-1] Length = 367 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 89/352 (25%), Positives = 163/352 (46%), Gaps = 28/352 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++++ E + + R + +K+TIP + ++ + G +E+ E+ I I AS Sbjct: 1 MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTISAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G VSA L + R++ G +++F + + +NIS + + SEFP Sbjct: 61 TEGEGEFVVSARLFSEFTRRMS-GDEVTFDIDESM--VINISCSATECSFPAMSASEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF + S LK+++ T +A + E + L G F I E+ VA DG R Sbjct: 118 LPMVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDI--ENGSFNMVAIDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + +VP+KA+ E+ ++ D + ++ I I S+ + Sbjct: 176 LAIR--GEMTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM------SSVRIQ----AVKLS 289 RL++G F NY+ IP E+ VN + +++R S++ S +R + VK+S Sbjct: 234 RLLEGAFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKIS 293 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 C T +GK ++++ + + I FN K +LE + D+V Sbjct: 294 ------CRT----GIGKINDAISADISGETVTIGFNNKLILEALRAAEGDKV 335 >gi|153831483|ref|ZP_01984150.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39] gi|148873034|gb|EDL71169.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39] Length = 144 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 45/146 (30%), Positives = 85/146 (58%), Gaps = 14/146 (9%) Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 13 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 72 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 73 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 127 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 128 ENVDDDS---------AMYVVMPIRL 144 >gi|237753473|ref|ZP_04583953.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC BAA-430] gi|229375740|gb|EEO25831.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC BAA-430] Length = 355 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 86/343 (25%), Positives = 172/343 (50%), Gaps = 23/343 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ S + + +++K++ ++ H+ L+ + L KA+ E+ + AI S Sbjct: 1 MNITISNSVLDNIFTSLQPFLDKKDSSQITSHIYLETRNNQLIAKATDFEMGLC-AITDS 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V++ G TV+ + DI+++L++G I+ + NE ++I S+F L F EF Sbjct: 60 VNILEEGIATVNGKQILDIIKRLKEG-DINLYTNNE---NLHIKQNKSSFKLPMFNAQEF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E E + E+ S L +++ + + LNG I E VATD Sbjct: 116 PTFPEFENLPKLEINSLELITSMKKIFPVIDMNNQKRELNGALLDIKEYSYNF--VATDT 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+ + D + K S+I PR+A+ EI R+ ++++ +E + + ++ Sbjct: 174 KRLAIIKFDKPS--GKNLSLIFPRRAITEIQRLFFD---NIELFYNEKNVIIKSQNYIFF 228 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL--- 295 LI+G+FP+Y+ ++P EL + TN+ ++ + +++SV VK++ + ++ Sbjct: 229 SHLINGKFPDYEKILPKEMQTELNIPKTNI---IEGIKVINSVT-NDVKITFKAQEILFE 284 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 ++ DN + IE + + NE ++I N +++L+ + I + Sbjct: 285 SLSQDNSEAKTQIE-IELPINE-EIEIGINSRHILDFLTQIDT 325 >gi|120601057|ref|YP_965457.1| subunit beta [Desulfovibrio vulgaris DP4] gi|120561286|gb|ABM27030.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris DP4] Length = 384 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 36/357 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + D++E L A II K + L A DG L + A+ IE G A Sbjct: 1 MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNF--------Y 109 V G V D++RKL G + +L E N I G + + Sbjct: 61 VTESGLAGVQGRAFVDLLRKLPAGEIVL-----QLDAEANVLRIEQGRRKYKLPVNDPVW 115 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEED 168 Q+F S+FP+ + V+S L+ L++R F ++ E+ + +F + E Sbjct: 116 FQNF--SDFPA--DGAVVWS----GDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEGR 167 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSES 226 ++ C + +GH+ A+ AK+P+ ++V +K +GE+ + L + + +++++SE Sbjct: 168 IEACGL--NGHQFAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEK 223 Query: 227 RIHLNIESL--SMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSV 281 R+HL + S+ L ++P+Y N I + L V+ A+DR+ I +S Sbjct: 224 RMHLRTGDGRETFSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSD 283 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + LS ++ +T D+G A ES+ Y+ I F + L++I+++ S Sbjct: 284 NNRCTYFDLSGGEVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS 340 >gi|241895508|ref|ZP_04782804.1| DNA-directed DNA polymerase III, beta chain [Weissella paramesenteroides ATCC 33313] gi|241871254|gb|EER75005.1| DNA-directed DNA polymerase III, beta chain [Weissella paramesenteroides ATCC 33313] Length = 376 Score = 90.9 bits (224), Expect = 3e-16, Method: Compositional matrix adjust. Identities = 82/358 (22%), Positives = 173/358 (48%), Gaps = 31/358 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ ++ + + R I + ++ + + L ++ L + S +I I IPA+ Sbjct: 1 MEFTINRAAFIKAMNNVNRAISSRTSMTILKGIKLVLDETGLILTGSNTDISIEILIPAN 60 Query: 61 VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 D G+I + A +IV++L +F N G + I+ ++ F + Sbjct: 61 DDEAKLQIMEPGAIVLPATFFSNIVKRLPGE---TFKLTNASGLQTKITSENAEFDINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E L++ L ++ +T A++ + + L G+ F + +L A Sbjct: 118 DANNYPHLPEVEVRNDLTLSADTLNEVIGQTVIAVSKQLSQPILTGVHFILASGNL--TA 175 Query: 174 VATDGHRLAVAEV-----DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 VATD HRLA V D+ A IIVP ++ ++ +L ++ V V ++E+++ Sbjct: 176 VATDRHRLAQRSVAFDDSDVNA------DIIVPGTSLTQLQAMLDEVEN-VDVRVAENQV 228 Query: 229 HLNI-ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286 + E+ + RL++G +P+ +IP L +N +L Q ++R +++S R + Sbjct: 229 IFQLGENTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVI 288 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341 + +++S+K ++ ++P++G+ E ++ E D I FN Y+ E + + +++ Sbjct: 289 QFAITSEKSLISSNSPEVGRVEEQ--IFAAETAGDDLTISFNPDYMREALRSFGDEQI 344 >gi|291548767|emb|CBL25029.1| DNA polymerase III, beta subunit [Ruminococcus torques L2-14] Length = 369 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 86/356 (24%), Positives = 174/356 (48%), Gaps = 35/356 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MRIICKKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVIKLTANDMELGIETTIDGI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 +D G I ++A + +IVRKL D + E E + I+ + F + + +F Sbjct: 61 IDSRGIIALNAKIFSEIVRKLPDNDVVI---ETESDNQAIITCEKAKFNIAAQSGDDFSY 117 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E+++ E LK +V +T F++A + + G F I+ + L++ V+ D Sbjct: 118 LPAIEREDFITISEFT---LKEVVRQTIFSIADNDTNKMMTGELFEIDNDVLRV--VSLD 172 Query: 178 GHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235 GHR+++ ++++ + A P +IVP K + EI +I+ + D+ V++S +++ I + Sbjct: 173 GHRISIRKIEL--KDAYQPRKVIVPGKTLQEISKIIGGEADAEVEISFTKNHIVFEFDRT 230 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RLI+GE+ ++ + + VN L +DR +++ DK Sbjct: 231 LVVSRLIEGEYFRIDQMLSSDYETRVHVNKKELLDCIDRATLLIK----------EGDKK 280 Query: 296 CMTVD--NPDMGKAIESMNVYYNE---CPMD-----ICFNYKYLLEIIDNISSDEV 341 + +D N M I+S +E C D I FN K+L++ + I +EV Sbjct: 281 PIIIDIKNESMELKIKSQIGSMDELIFCTKDGKDLMIGFNPKFLIDALRVIEDEEV 336 >gi|34556460|ref|NP_906275.1| DNA polymerase III subunit beta [Wolinella succinogenes DSM 1740] gi|34482174|emb|CAE09175.1| DNA POLYMERASE III, BETA CHAIN [Wolinella succinogenes] Length = 355 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 91/367 (24%), Positives = 175/367 (47%), Gaps = 25/367 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I + +S + +L + +E+K+ ++ HV +A L +A+ EI + + Sbjct: 1 MNIVIPKSSLENILTNLQPFLEKKDASQITSHVYFKAQGSELTFQATDYEIGLLAKTESV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV+ + DIVR+L++G +I+ + E ++I S+F L F EFP Sbjct: 61 QIQKEGIATVNGKKILDIVRRLKEG-EITLQSQEEY---LHIKQEKSSFKLPMFNAEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E + E+ S L +++ A+ ++ LNG I E VATD Sbjct: 117 SFPSYEELPKIEINSMHLVQSMKKILPAIDNNNPKFELNGALLDIKEYSFNF--VATDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + I K+ ++IVP+KA+ EI ++ + V++ SE+ + L ++ Sbjct: 175 RLAVIKYE-NPSINKL-ALIVPKKAIVEIQKLFFEE---VELHYSETHLILKSKNYLFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 +LI G++P+Y+ +IP + + + +A+ ++ +S+ +K++ + +++ Sbjct: 230 KLISGKYPDYERIIPKETTHNMTLPKEKIIEAIKLINSLSN----DIKVTFTKEEILFES 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE----VVDDEVVFRLDS 352 ++ +N + +E E + I N KYLL+ + I + E + + F L S Sbjct: 286 LSEENSEAKTQVEVETGITKELTLGI--NSKYLLDYLGQIDTSEFKIGINESNTPFILKS 343 Query: 353 SNSSVFI 359 N S I Sbjct: 344 ENFSTVI 350 >gi|256389234|ref|YP_003110798.1| DNA polymerase III subunit beta [Catenulispora acidiphila DSM 44928] gi|256355460|gb|ACU68957.1| DNA polymerase III, beta subunit [Catenulispora acidiphila DSM 44928] Length = 396 Score = 90.5 bits (223), Expect = 4e-16, Method: Compositional matrix adjust. Identities = 98/407 (24%), Positives = 177/407 (43%), Gaps = 39/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-----LLEIKASGPEIEIT- 54 MK VER + E + R + + PV ++ +A +G + SG + E++ Sbjct: 1 MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60 Query: 55 -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 I A V G I + LL DI + L + + F E G++V +S G S F LQ+ Sbjct: 61 RAQIGADVTEPGRILIHGKLLADIAKSLPN-RPVEFSTE---GSKVLLSCGSSRFTLQTL 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P ++P+ AS L V + A ++ L GI I E K+ Sbjct: 117 PVEDYPALPTMPTATGAVTASG-LAGAVSQVAIAAGRDDTIPMLTGIRVEIEGE--KITL 173 Query: 174 VATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD RLAV E+ + M + ++P K + + + L+ D V ++LS + Sbjct: 174 VATDRFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGDW-VSLALSGGDAGEGL 232 Query: 233 --------------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 S M+ RL+ GEF Y+++ P + V +A RVS++ Sbjct: 233 IGFESGEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVSLV 292 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + R +KL+ + ++ + D +A E+M+ + + + FN +LL+ + I + Sbjct: 293 AD-RTSPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVIDT 351 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ F + +S +V + D+ ++ + Y++MP+R+ Sbjct: 352 QYA---QLSFTV-ASKPAVLMGRPALDAPAQEEFR----YLMMPLRV 390 >gi|88854500|ref|ZP_01129167.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1] gi|88816308|gb|EAR26163.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1] Length = 381 Score = 90.5 bits (223), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 80/347 (23%), Positives = 173/347 (49%), Gaps = 15/347 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R E + A +++ ++ T+P+ VL++A D L + + E+ I A Sbjct: 1 MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATDEGLTLSSFDYEVSARTQIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + VS LL +I +L + A + F E+ ++ ++ G +F L S P E+P+ Sbjct: 61 VDEPGRVLVSGKLLAEIASRLPN-APVRFSTEDN---KITVACGTGHFTLSSMPVEEYPT 116 Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V + L + + + + A + +++ + G+ +++ ++ L VATD + Sbjct: 117 LPQISDQVGT--LKADLFSAAIAQVAVAASRDDVTPVITGVQLEVSQNNISL--VATDRY 172 Query: 180 RLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR--IHLNIES 234 R+AV E D A + + +VP K + E+ + S + SV ++ ++ R I + ++ Sbjct: 173 RVAVRDIEWDAGASGVESATALVPAKTLVEVGKTFGNSGEISVAITSTDERELIAFHADN 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +++ LI G FP + + P + D +N L +AV RVS++ R A++ + +++ Sbjct: 233 KTVTSLLIKGNFPPVRRLFPETVDNFAVMNTAELIEAVRRVSLVLE-REAALRFTFTTEG 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + + +A E+++ + + ++L++ + ++ S+ V Sbjct: 292 VTLEAIGSEQAQASETIDAFLTGDDTVVSLKPQFLIDGLSSVHSEFV 338 >gi|320095109|ref|ZP_08026818.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319977976|gb|EFW09610.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 378 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 169/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A D L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIRAADDELTLSSFDYEVSANSKIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + VS LL DI + L + G +VN+ G S+F L P E+P Sbjct: 61 VDEAGEVLVSGRLLADISKSLPSKPVTVELE----GQKVNLVCGSSHFTLAVMPLDEYPL 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + L V + A + ++ L G+ + + +ATD +R Sbjct: 117 LPAQPAAIGY-IDPQTLAQAVAQVSIAASRDDTLPLLAGVCTELTGSTITF--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 LA+ E+D + + V + + + + + + V+V LS S I + Sbjct: 174 LAMRELDWQPTDTSIEEVTVIKARILQDVAKSMTSGTKVEVGLSGQSQPGASSLIGFSAS 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + L+DG++P + + P + + + L +AV R+S+++ R +V+L+ S Sbjct: 234 GRHTTSTLMDGDYPAVRRLFPETTPIQAVCDRHALLEAVKRMSLVAE-RNTSVRLAFSEG 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + + +A E++ + + FN ++L+E + + + D V F + Sbjct: 293 QVVLEAGQGENAQASEAIEATLHGDDISTAFNPQFLIEGLSVLDT-----DYVRFGFTHA 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384 I G+ K + +V F Y+LMP+R Sbjct: 348 TKPAVITGQ----KKPDEGEVTQFRYLLMPIR 375 >gi|46578419|ref|YP_009227.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|46447830|gb|AAS94486.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311232351|gb|ADP85205.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris RCH1] Length = 384 Score = 90.1 bits (222), Expect = 5e-16, Method: Compositional matrix adjust. Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 36/357 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + D++E L A II K + L A DG L + A+ IE G A Sbjct: 1 MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNF--------Y 109 V G V D++RKL G + +L E N I G + + Sbjct: 61 VTEPGLAGVQGRAFVDLLRKLPAGEIVL-----QLDAEANVLRIEQGRRKYKLPVNDPVW 115 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEED 168 Q+F S+FP+ + V+S L+ L++R F ++ E+ + +F + E Sbjct: 116 FQNF--SDFPA--DGAVVWS----GDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEGR 167 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSES 226 ++ C + +GH+ A+ AK+P+ ++V +K +GE+ + L + + +++++SE Sbjct: 168 IEACGL--NGHQFAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEK 223 Query: 227 RIHLNIESL--SMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSV 281 R+HL + S+ L ++P+Y N I + L V+ A+DR+ I +S Sbjct: 224 RMHLRTGDGRETFSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSD 283 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + LS ++ +T D+G A ES+ Y+ I F + L++I+++ S Sbjct: 284 NNRCTYFDLSGGEVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS 340 >gi|119953226|ref|YP_945435.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135] gi|119861997|gb|AAX17765.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135] Length = 386 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 79/334 (23%), Positives = 157/334 (47%), Gaps = 20/334 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 + A II +N + +LL+ + L+IKA+ I IP + ++A Sbjct: 17 IDKAKSIILNRNINDIWSAILLEVKNSNLKIKATDRNIFFESTIPIVSAENFKVLINASN 76 Query: 74 LYDIVRKLQ--DGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFPSTK-------- 122 D V+ L + +I F + E++L + + NF E F S + Sbjct: 77 FSDAVKALNLYNELKIKFIEDESKLSIIGESENKNDNFINDHLSEPTFSSEEIEIYNYDI 136 Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 EE Y + EL K ++ + F+ + +E + LNGI+F +++ L V+T+ HRL Sbjct: 137 NEEIYNLTVELTQREFKKIINKVSFSASHDESKNVLNGIYF-TKDKNSALTFVSTNSHRL 195 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 +V + D++ + + + IVP K V +LR + + +K+ +S+ + ++ + + L Sbjct: 196 SVYKTDLIFE--EDINFIVPVKMVN-LLRQMMVGEGIIKLKISDKKFYVEFNNYKIVCSL 252 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 I+G +P+Y+++IP + ++ + L+ + RVS + R + V L+ + ++L + ++ Sbjct: 253 INGNYPDYESIIPNEQQNKALIDVSILKDRLSRVSSYTDKRSKKVILNFAGNQLRLMAED 312 Query: 302 PDMGKA----IESMNVYYNECPMDICFNYKYLLE 331 P G+ ++S N Y + N Y E Sbjct: 313 PITGRKGEFFVQSPNYDYEGSEEVVAINSAYFTE 346 >gi|161598680|ref|NP_938411.2| DNA polymerase III subunit beta [Corynebacterium diphtheriae NCTC 13129] Length = 395 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 175/397 (44%), Gaps = 29/397 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 VE+ D+ + R + K T PV V++ A+D LE E+ I A V Sbjct: 10 VEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVRQP 69 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I V+ L+ DI+ L + I F E GT+V + G S F L P E+P + Sbjct: 70 GRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLPQL 125 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 V + ++ + V + A +E L GI I+ E++ L ATD RLA+ Sbjct: 126 PAVTG-AIDPNLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTLT--ATDRFRLALR 182 Query: 185 EVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235 A +++P K + + R L S + V++++ +E ++I++ Sbjct: 183 RFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHIDNR 242 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + R++D +FPN ++P ++ V + L A+ RV++++ Q +++ + D++ Sbjct: 243 QTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVAERNAQ-IRMQFTRDEV 301 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353 ++ D G A ES+ + + I FN YL + + I + VVF + S Sbjct: 302 ILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRT-----SRVVFGFTEPS 356 Query: 354 NSSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385 ++ I + + + D Y+LMP+R+ Sbjct: 357 RPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 393 >gi|226326147|ref|ZP_03801665.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758] gi|225205689|gb|EEG88043.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758] Length = 369 Score = 89.7 bits (221), Expect = 6e-16, Method: Compositional matrix adjust. Identities = 82/356 (23%), Positives = 171/356 (48%), Gaps = 33/356 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD+++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIRCLKSDLVKGVSIVSKAVPTKTTMPILECILIDATTDIIKLTANDMELGIETVIRGQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G I + A + DIVRKL D + E+ + + I+ + F + +F Sbjct: 61 IDEKGMIALDARIFSDIVRKLPDNEIVI---ESGVNFQTLITCEKAKFNISGKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F +N + LK+ V+ DGHR Sbjct: 118 LPYIERENPVSISQFTLKEVIRQTIFSIADNDSNKLMTGELFDMNGDILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + + I+VP K + E+ +ILS + DS V++ + + I + + Sbjct: 176 ISIRKIEL-KESYEPKKIVVPGKTLIEVSKILSGEADSEVRLYFTANHIVFEFDDTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS----------IMSSVRIQAVKLS 289 RLI+GE+ + ++ + ++R+N L +DR + I+ +++ + ++L Sbjct: 235 RLIEGEYFRIEQMLSNDYETKVRINKRELLNCIDRATLLVKEGDKKPIIINIQDEMMELK 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + S+K G E + + + I FN K+L++ + V+DDE Sbjct: 295 IKSEK----------GTMDEEIMITKEGKDLLIGFNPKFLIDAL------RVIDDE 334 >gi|312792285|ref|YP_004025208.1| DNA polymerase III subunit beta [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179425|gb|ADQ39595.1| DNA polymerase III, beta subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 368 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 87/357 (24%), Positives = 168/357 (47%), Gaps = 27/357 (7%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 VL++A D ++ + ++++ A + G+ V A L DIV+KL G ++ +E Sbjct: 33 VLIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPSG-EVEVIRE 90 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 + EV I F L + +FP +++ E +S + V++ FA + +E Sbjct: 91 D---NEVKIRSQKIEFRLPTLDPLDFPKMEKKPSESFCEFVASEFVDGVDKVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F E+D + V DGHRLA+ ++ +A + S IVP + + +I +I+ Sbjct: 148 TRPTFTGVLFEKEEDDF-VNLVGMDGHRLAICKIKPIA-VEGSFSKIVPAENLDDITKIV 205 Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 +++ V+VS E++ I S ++ + LI G+F +Y+ IP ++ ++ L Sbjct: 206 DIEEAEKVRVSFFENQATFEIGSTTVILTLITGKFFDYKGAIPTEYSTKISISSDVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 ++R SI+S IQAV + + + D G+ E + + + FN KY Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMMFTVRSMSAD-GRYEEDVLCSVEGKDIRVGFNVKY 324 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+++ + D E+ ++FI + S K + N Y+++P+++ Sbjct: 325 FLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366 >gi|1321905|emb|CAA63258.1| dnaN [Mycobacterium tuberculosis H37Rv] Length = 399 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 91/384 (23%), Positives = 168/384 (43%), Gaps = 38/384 (9%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + + +PV VLL +D L I E+ + A + GS+ VS LL DI R Sbjct: 33 LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138 L + + E G V ++ G++ F L + P ++P+ T EE + L + + Sbjct: 93 LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197 + + A ++ L G I E L ATD RLAV E++ A + + Sbjct: 146 EAISQVAIAAGRDDTLPMLTG----IRVESLVRRGCATD-SRLAVRELEWSASSPDIEAA 200 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++VP K + E + S V++SL + + ++ + RL+D EFP ++ Sbjct: 201 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 259 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 ++P + ++ L +A+ V++++ R V++ + + ++ D+G+A E Sbjct: 260 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 318 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367 + V Y P+ I FN YL + + ++ S + V F ++ +R G D+ Sbjct: 319 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 373 Query: 368 NNKDN------KVNAFYVLMPMRI 385 N + Y+LMP+R+ Sbjct: 374 GLNGNGPFPAVSTDYVYLLMPVRL 397 >gi|300857419|ref|YP_003782402.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300684873|gb|ADK27795.1| DNA polymerase III beta subunit [Corynebacterium pseudotuberculosis FRC41] gi|302205159|gb|ADL09501.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis C231] gi|302329717|gb|ADL19911.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis 1002] gi|308275400|gb|ADO25299.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis I19] Length = 395 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 29/397 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 VE+ D+ + R + K T PV V++ A+D LE EI I A V Sbjct: 10 VEKEDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEISTKVRISADVSQP 69 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I V+ LL DI+ L + F E G++ + G S F L P E+P + Sbjct: 70 GRIAVAGKLLSDIIGTLP-AKPVEIFVE---GSQALVVCGSSRFELPLIPLDEYPILPKL 125 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + + + V + A ++ L GI I+ ED+ L ATD RLA+ Sbjct: 126 PAATG-AIDPKLFADAVLQVAAAAGKDDTLPMLTGIHMEIDGEDVTLT--ATDRFRLALR 182 Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235 + + +++P K + + R L + V++++ SE ++I+S Sbjct: 183 RFQWTPAVPDAKADLLIPAKNLSDNARSLDQNSTDPVEIAVGAGESIGSEGLFGIHIDSR 242 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + R++D +FPN ++P + V + L A+ RV++++ Q ++L S +++ Sbjct: 243 QTTTRMLDADFPNVNPLLPKVHKSMASVEISALADAIRRVALVAERNAQ-IRLQFSKNEV 301 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353 ++ D G A ES+ Y + I FN YL + + I + + VVF + S Sbjct: 302 ILSAGGSDAGHAEESVPCAYTGDEDFLIAFNSGYLRDGLSVIKT-----NRVVFGFTEPS 356 Query: 354 NSSVFIRGKDKDSKNNKDNK-----VNAFYVLMPMRI 385 ++ I ++ + + D + Y+LMP+R+ Sbjct: 357 RPAIMIPEPEELPEADSDGTFPTPNTDFTYLLMPVRL 393 >gi|283778831|ref|YP_003369586.1| DNA polymerase III subunit beta [Pirellula staleyi DSM 6068] gi|283437284|gb|ADB15726.1| DNA polymerase III, beta subunit [Pirellula staleyi DSM 6068] Length = 372 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 47/299 (15%) Query: 103 HGD-SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161 GD S F LQS EFP E +++++LK ++ RT FA E RY L G+ Sbjct: 99 RGDRSEFRLQSEDPEEFPIVALFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVL 158 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVA----------QIAKMPSIIVPRKAVGEILRI 211 ++ + KL AV TDG RLA E A I + PS+ + +A+ E Sbjct: 159 IELHGD--KLIAVGTDGRRLAKMEGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISE---- 212 Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT----- 266 D++V+++ S + L E + RL++G FP +++V P D ++++ T Sbjct: 213 ---NDNTVQLAARSSDVLLKTERATFYSRLVEGRFPRWRDVFPRRQDA-IKIDLTVGPFF 268 Query: 267 -NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 LRQA ++++S + + + + L ++ D G++ M + Y + + + Sbjct: 269 SVLRQA----AVVTSQDSRGIDFTFADGTLTLSAVTSDAGQSRVEMPISYTGSAITVTLD 324 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPM 383 ++++ + + +S ++ +V ++S+ S+ D +A+ YV+MP+ Sbjct: 325 HRFVADFLKVLSPEQT----IVLEIESAESAAVFTADD-----------SAYGYVVMPL 368 >gi|325265441|ref|ZP_08132164.1| DNA polymerase III, beta subunit [Clostridium sp. D5] gi|324029299|gb|EGB90591.1| DNA polymerase III, beta subunit [Clostridium sp. D5] Length = 384 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 89/396 (22%), Positives = 189/396 (47%), Gaps = 46/396 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A+ ++++ A+ E+ I I Sbjct: 16 MKIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVVKLTANDMELGIETRIEGD 75 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I ++A + +IVRKL D + ++ +++ T + N QS + S P Sbjct: 76 IVERGIIALNARIFSEIVRKLPD-SDVTIETDSDNQTLITCEKAKFNIAAQSGEDFSYLP 134 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++E+Y+ E LK ++ +T F++A + + G F I ED L V+ DGH Sbjct: 135 VIEKEDYITVSEFT---LKEVIRQTIFSIADNDTNKMMTGELFEI--EDSILKVVSLDGH 189 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 R+++ ++++ A +IVP K + EI +I+ + ++ V +S +++ I + + Sbjct: 190 RISIRKIELKEDYAP-KKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTVVV 248 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS----------IMSSVRIQAVKL 288 RLI+G++ ++ + ++R+N L +DR + I+ +R ++++L Sbjct: 249 SRLIEGDYFKIDQMLSSDYETKVRINKKELLDCIDRATLLIKEGDKKPIIIDIRDESMEL 308 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV- 347 + S +G E + + + I FN K++++ + V+DDE V Sbjct: 309 KIKS----------QIGSMDEEIFITKEGKDLMIGFNPKFMIDAL------RVIDDEEVD 352 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + FI KD K + Y+++P+ Sbjct: 353 LYYMNAKAPCFI----------KDEKQSYIYLILPV 378 >gi|312877903|ref|ZP_07737848.1| DNA polymerase III, beta subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311795329|gb|EFR11713.1| DNA polymerase III, beta subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 368 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 87/357 (24%), Positives = 168/357 (47%), Gaps = 27/357 (7%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 VL++A D ++ + ++++ A + G+ V A L DIV+KL G ++ +E Sbjct: 33 VLIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPSG-EVEVVRE 90 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 + EV I F L + +FP +++ E +S + V++ FA + +E Sbjct: 91 D---NEVKIRSQKIEFRLPTLDPLDFPKMEKKPSESFCEFVASEFVDGVDKVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F E+D + V DGHRLA+ ++ +A + S IVP + + +I +I+ Sbjct: 148 TRPTFTGVLFEKEEDDF-VNLVGMDGHRLAICKIKPIA-VEGSFSKIVPAENLDDITKIV 205 Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 +++ V+VS E++ I S ++ + LI G+F +Y+ IP ++ ++ L Sbjct: 206 DIEEAEKVRVSFFENQATFEIGSTTVILTLITGKFFDYKGAIPTEYSTKISISSDVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 ++R SI+S IQAV + + + D G+ E + + + FN KY Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMMFTVRSMSAD-GRYEEDVLCSVEGKDIRVGFNVKY 324 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+++ + D E+ ++FI + S K + N Y+++P+++ Sbjct: 325 FLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366 >gi|289705897|ref|ZP_06502276.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58] gi|289557382|gb|EFD50694.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58] Length = 371 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 95/390 (24%), Positives = 178/390 (45%), Gaps = 25/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + + + A R + + +PV +L+ A G++ I + E I A Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 V+ G + VS LL DIVR L AQ++ EL G +V ++ S F L + P ++P Sbjct: 61 VETAGQVLVSGRLLNDIVRSLPQ-AQVTV----ELDGGKVLVTCRSSRFALATMPVGDYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + + + + V + A + ++ L + I + + +ATD + Sbjct: 116 ALPELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTMTF--LATDRY 172 Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ E+ A + S+++ + + E+ + L S D + + + + Sbjct: 173 RLAMKEIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DGE+P +++ P S+ + V+ L +A RV++++ R A+++ + ++ + Sbjct: 233 TSVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAE-RNTALRMVFTDGQVTL 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVVFRLDSSNSS 356 D A ES+ + + FN YL E + VVD +V F S+ Sbjct: 292 DAGTGDDASANESVPCTLEGEDITVAFNPSYLSEGL------AVVDQPQVRFAFTSAPKP 345 Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 + G N +D V+ + Y++MP+RI Sbjct: 346 ALLTG-----VNQEDGVVSDYRYLVMPVRI 370 >gi|256831257|ref|YP_003159984.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603] gi|256684788|gb|ACV07681.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603] Length = 376 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 92/389 (23%), Positives = 181/389 (46%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + PV V ++A +G++++ + E+ G IPA Sbjct: 1 MKFRVERDVLTEAVTWTARTLPARPPAPVLSGVRIEATQEGVVKLASFDYEVSARGEIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I VS LL +I + L + F + GT+V++ G S F L + P E+P Sbjct: 61 EVTEPGTILVSGRLLAEIAKALPH-KPVDFTVD---GTKVSVVCGASRFSLLTMPVEEYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + S L V + A + ++ L G+ I E K+ +ATD + Sbjct: 117 TLPTMPELTGV-VDGSELSAAVSQVTVAASRDDTLPLLTGVRIEIEGE--KVTLLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237 RLA+ E+ M ++ + R + + ++ + L D +V +S+ E + E+ Sbjct: 174 RLALREMTWRPSAPDMSTVALVRARTLNDVSKSLGPVGDVNVALSVGEGVDLIGFEAGGR 233 Query: 238 SVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 L+DG++P+ + + P V L A RV++++ R ++L+ S ++ Sbjct: 234 QTTSLLVDGDYPHVRRLFPDETPIHAVVATQPLIDAARRVALVAE-RNTPIRLNFSEGQV 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D +A E + + + FN ++LL+ ++ + +D V RL ++ Sbjct: 293 VLDAGQGDDAQASEVLESTLVGEDISVAFNPQFLLDGLNALGTDFV-------RLSFTHP 345 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + ++S + +D+K + Y+L+P+R Sbjct: 346 NKPVEFTGQESLDGEDSK-HYRYLLVPIR 373 >gi|38198902|emb|CAE48513.1| DNA polymerase III, beta chain [Corynebacterium diphtheriae] Length = 405 Score = 89.7 bits (221), Expect = 7e-16, Method: Compositional matrix adjust. Identities = 97/397 (24%), Positives = 175/397 (44%), Gaps = 29/397 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 VE+ D+ + R + K T PV V++ A+D LE E+ I A V Sbjct: 20 VEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVRQP 79 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I V+ L+ DI+ L + I F E GT+V + G S F L P E+P + Sbjct: 80 GRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLPQL 135 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 V + ++ + V + A +E L GI I+ E++ L ATD RLA+ Sbjct: 136 PAVTG-AIDPNLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTLT--ATDRFRLALR 192 Query: 185 EVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235 A +++P K + + R L S + V++++ +E ++I++ Sbjct: 193 RFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHIDNR 252 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + R++D +FPN ++P ++ V + L A+ RV++++ Q +++ + D++ Sbjct: 253 QTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVAERNAQ-IRMQFTRDEV 311 Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353 ++ D G A ES+ + + I FN YL + + I + VVF + S Sbjct: 312 ILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRT-----SRVVFGFTEPS 366 Query: 354 NSSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385 ++ I + + + D Y+LMP+R+ Sbjct: 367 RPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 403 >gi|323486748|ref|ZP_08092067.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum WAL-14163] gi|323694890|ref|ZP_08109040.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323399887|gb|EGA92266.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum WAL-14163] gi|323500980|gb|EGB16892.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 372 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 97/400 (24%), Positives = 180/400 (45%), Gaps = 52/400 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ + +++ + + + K T+P+ +L+ A +++ + E+ I + Sbjct: 1 MKLSFNKDNLMNGINIVLKAVSSKTTMPILECILIDATSNEIKLTGNDMELGIETKVEGM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I + A LL DI+RKL + + +E V I+ S F +Q EF Sbjct: 61 ILERGKIALDAKLLSDIIRKLSGDESLITIESDEKFNTV-ITCEKSVFKIQGKDGEEFSY 119 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + + Y+ L+ LK ++ +T F+ + + + G +N+ LK+ V+ D Sbjct: 120 IPHIERDNYIC---LSQFTLKEVIRQTLFSTSPNDSNKMMTGELIEVNDNILKV--VSLD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 GHR+++ +V + Q + +IVP K +GEI +IL+ +S V + + + I + Sbjct: 175 GHRMSIRKVILKDQYHDI-KVIVPGKTLGEISKILNGDNESEVLIFFTSNHIMFEFDDTV 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLI+GE+ ++ D ++ VN +++R SI+ +R +DK Sbjct: 234 VVSRLIEGEYFRINQMLSSDYDTKVTVNRREFMDSIERASIL--IR--------ENDKKP 283 Query: 297 MTVDNPDMG------KAIESMNVYYNECPMD----ICFNYKYL---LEIIDNISSDEVVD 343 + ++ D G A +MN N I FN K+L L IID D Sbjct: 284 IIINITDEGMELKLNSAFGTMNAEINITKFGKDLMIGFNPKFLVDALRIID--------D 335 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +EV + + S FI KD + N Y+++P+ Sbjct: 336 EEVTLYMMNPKSPCFI----------KDEEENYIYLILPV 365 >gi|289450447|ref|YP_003474444.1| DNA polymerase III subunit beta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184994|gb|ADC91419.1| DNA polymerase III, beta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 367 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 90/388 (23%), Positives = 188/388 (48%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +++ +++ + + + I + T+P+ +L A + L+ + E I +PA Sbjct: 1 MKFTCDKNLLIDAITNVQKAISTRTTMPILEGILFDAENNLI-LTGYDMETAIKYTMPAK 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + +++ ++ +IV+K ISF EN V I G S F L ++P+ Sbjct: 60 IEEQGKVVLNSKIIGEIVKKAA-AETISFDVENNYS--VLIQSGLSKFKLHGLSAEDYPA 116 Query: 121 TKEEEYVYSFE--LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + E L + L +L++++ F+++ +E R LNG F + +E+ + V DG Sbjct: 117 LVENDSNVKQEITLPQNELYSLIKKSIFSVSLDEKRPNLNGCF--LKKENKVIEMVGIDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R++VA+ Q S I+P K + +L +L + ++ +S +++ + +M Sbjct: 175 FRVSVADFYDANQDEVDISFIIPHKTLRNLLSMLE-ESGNILISKKSNQLIFDFGRKTMI 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I + NY+N+ P + + + +L +++R +MSS +++ D M Sbjct: 234 SRIISENYINYRNIFPEQSITNIELKTKDLLGSIERSILMSSPDDHRYPVTIKCDSETME 293 Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356 + + + G E ++V + +D+ N YL++ + +V+DDE + + S+ Sbjct: 294 ISSINNRGDFHEIIDVTFKGKAVDVDINPYYLIDAL------KVIDDEKIKVSFNESSGP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I + NNK N ++++P+R Sbjct: 348 VII-----EPINNK----NFMFLILPLR 366 >gi|229829519|ref|ZP_04455588.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM 14600] gi|229791950|gb|EEP28064.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 89.4 bits (220), Expect = 8e-16, Method: Compositional matrix adjust. Identities = 91/397 (22%), Positives = 189/397 (47%), Gaps = 48/397 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT ++++++ + + + + T+P+ +L+ A+ +++ A+ EI I I Sbjct: 1 MKITCSQAELVKGVNIVTKAVPTRTTMPILQCILIDASANQIKLMANDMEIGIETIIDGR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 ++ G I + A + +IV+KL D + E+ + NIS +NF + F Sbjct: 61 IEERGIIALDASIFSNIVKKLPDSQVVITTGES---FQANISCEKANFNINGMDGENFAY 117 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P E V E LK ++ +T F++A E + G F I+ +++ V+ D Sbjct: 118 LPVIPRNEPVVISEFT---LKEVIRQTIFSIADNENNKLMAGELFEIHGSRMRV--VSLD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236 GHR+++ +++ ++ ++VP K + EI +I+ S + +V + ++E+ I + Sbjct: 173 GHRISIRNIELKSECPDY-KVVVPGKTLNEISKIIPGSYEENVMIYITENHIIFEFGQTT 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-- 294 + RLIDGE+ + ++ + ++R++ L + +DR +++ + DK Sbjct: 232 VVSRLIDGEYFKIEQMLSSDYETKIRISKRELLECIDRATLLVN----------PGDKKP 281 Query: 295 LCMTVDNPDMGKAIESM------NVYYNECPMDIC--FNYKYLLEIIDNISSDEVVDDEV 346 + M V + +M I+S N+ ++ DI FN K+ ++ + NI D+E+ Sbjct: 282 IIMNVTDGNMELNIQSFIGSMNENIAIDKEGRDILIGFNPKFFIDALRNID-----DEEI 336 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + + FI KD D+K Y+++P+ Sbjct: 337 TIYMVNPKAPCFI--KDDDNK--------FLYLILPV 363 >gi|213421124|ref|ZP_03354190.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 157 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 53/166 (31%), Positives = 94/166 (56%), Gaps = 14/166 (8%) Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +V + + I ++ + +L+DG FP+Y+ V+P + DK L C L+QA R +I+S Sbjct: 6 RVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 65 Query: 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + + + V+L +S ++L +T +NP+ +A E ++V Y M+I FN Y+L++++ + Sbjct: 66 NEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC- 124 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V L S SSV I +D S+ +A YV+MPMR+ Sbjct: 125 ----ETVRIMLTDSVSSVQI--EDAASQ-------SAAYVVMPMRL 157 >gi|256545951|ref|ZP_05473306.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC 51170] gi|256398373|gb|EEU11995.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC 51170] Length = 375 Score = 89.4 bits (220), Expect = 9e-16, Method: Compositional matrix adjust. Identities = 85/338 (25%), Positives = 160/338 (47%), Gaps = 21/338 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ D+ + A + + RK I + + +A + L + +S EI I Sbjct: 6 MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDTLTLTSSDGEISIVTKANCK 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE--- 117 V G + ++A+++ +IVRKL D K +++ I SNF + +F E Sbjct: 66 VVQEGEMAINANIIANIVRKLPD----ELIKIELEDSKIKIKCNGSNFNILAFDYYEKKN 121 Query: 118 --FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 PS V E+ + LK + +T FA + +E + L GI F + +D L VA Sbjct: 122 FSIPS------VDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFEL--KDGYLNFVA 173 Query: 176 TDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DG+R+A+ ++ + +I+PRK++ E RI+ + K+ + I Sbjct: 174 LDGYRVALKKLKLSYPSSMDKARLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 +M ++ID + +Y N+I + L V+ L +++R ++++ R +K+++ D Sbjct: 233 TTMYCKVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 K C+ N ++G E + + + I FN +YL+E Sbjct: 293 K-CLIESNSEIGDLKEVLQIQKEGDDVKIAFNARYLIE 329 >gi|119714274|ref|YP_921239.1| DNA polymerase III subunit beta [Nocardioides sp. JS614] gi|119534935|gb|ABL79552.1| DNA polymerase III, beta subunit [Nocardioides sp. JS614] Length = 408 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/400 (24%), Positives = 177/400 (44%), Gaps = 38/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K VER + + + A R + + ++PV +L++A+D L + E + A Sbjct: 30 VKFRVERDVLADAVAWAARSLPVRPSVPVLAGLLVEASDDGLVLSTFDYETSARATLTAE 89 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V G VS LL DI R L K E+ G V+++ G + F LQ+ P + Sbjct: 90 VSDEGQALVSGRLLADICRSLP-------AKPVEMVLDGARVSLTCGSARFSLQTMPVDD 142 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS + S + V + A +++ L G+ I+ + L +ATD Sbjct: 143 YPSLPSMPAATG-TVQSEAFAHAVAQAVTAAGRDDMLPVLTGVRIEIDGSTISL--LATD 199 Query: 178 GHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL+ E++ + + + +VP + +G+ + L+ V ++L+ + I Sbjct: 200 RFRLSHRELEWSPRTPDESAAALVPARVLGDTAKSLTGG-GEVTIALATTGSGEGIIGFE 258 Query: 237 ---------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + RL+DGEFP +++ P + V+ L ++V RV++++ R AV+ Sbjct: 259 GHGPGGLRRTTTRLLDGEFPKVRSLFPNEHQTTALVDKAALVESVKRVALVAE-RNTAVQ 317 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L+ S L + + D +A ES+ + + FN ++LL+ + I D+ V Sbjct: 318 LAFSDGVLTLDAGSGDEAQASESIEATIDGEDITTGFNPQFLLDGLTAI-------DQPV 370 Query: 348 FRLDSSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L + +S V I G + + D + Y+LMP R+ Sbjct: 371 VELAFTQASKPVVISG----AVDGDDTDSSFRYLLMPRRL 406 >gi|269791621|ref|YP_003316525.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099256|gb|ACZ18243.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 379 Score = 89.4 bits (220), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/342 (23%), Positives = 167/342 (48%), Gaps = 15/342 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+ +E+ + A R ++ S V+++++ G +E+ A+ + + + Sbjct: 1 MKLNIEKGPFIRAWNMAERCAGASSSG-ASSSVMIRSSAGRVELFATDMKTSLRCPVQGV 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G + +L D+ +K D SF E G +S G S + ++ SEFP Sbjct: 60 QSDLDGEALLPVKVLGDLFKKCPD---PSFTINLEEGRGTMVS-GRSRYRFSTYDVSEFP 115 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATD 177 F + + L+N + A +T +E YL+ ++ ++ L++ V+TD Sbjct: 116 KFPSSASAAQFGTVKAQDLRNAISEGGIAASTSDEYPQYLSCVYLQGDQGALRI--VSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL 235 RLA ++ + ++ S+++P +A+ E+ R+LS +D V++ L +++ + + Sbjct: 174 SRRLAYSKCPMEGSSSE--SMLLPMRAIRELDRMLSGLQEDGDVRILLDQAQAYFISDDF 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++R +DG+FP Y+ +IP S + V+ + + A++R+ ++ + V ++LS Sbjct: 232 EFAIRRVDGKFPQYERIIPKSCTTFMEVSRSQMIGALERLDLVVRDFNKMVAVNLSPGGS 291 Query: 296 C-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 C + +P+ G A+E + P+ I FN K+LL+ + + Sbjct: 292 CTLRSRSPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDGVKGL 333 >gi|291561643|emb|CBL40442.1| DNA polymerase III, beta subunit [butyrate-producing bacterium SS3/4] Length = 372 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 85/371 (22%), Positives = 177/371 (47%), Gaps = 22/371 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T +++ +L + + + K T+P+ +L+ A+ +++ A+ E+ I + Sbjct: 1 MKLTFQKTALLNGINIVLKAVPSKTTMPILECILIDASTDEIKLTANDMELGIETKVEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I RKL D + + +E V I+ +S F +Q EF Sbjct: 61 ILEKGKIALDAKLFSEIARKLSDSDSLVTIESDEKFNTV-ITCENSVFKIQGKDGEEFSY 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L+ LK ++ +T F+++ + + G F +N + L++ V+ DGHR Sbjct: 120 LPYIERNKNITLSQFSLKEVIRQTIFSISVNDSNKMMTGELFEVNGDTLRV--VSLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ ++ + +IVP K + EI +IL+ + V++ + I + + Sbjct: 178 MAIRKI-VLKDEYESTKVIVPGKTLNEISKILTGDNEKEVQIFFGANHILFEFDDTIVVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDKLC 296 RLI+GE+ ++ ++ +N + +++R SI+ +R + + L++ K+ Sbjct: 237 RLIEGEYFKVDQMLSSDYATKVSLNKKDFLDSIERASIL--IRENDKKPIILNIEDSKMG 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYL---LEIIDNISSDEVVDDEVVFRLDSS 353 + + N G + ++ + I FN K+L L IID D+EV + ++ Sbjct: 295 LKL-NSSFGTMNAEILIHKTGQDLMIGFNPKFLSDALRIID--------DEEVTLYMMNA 345 Query: 354 NSSVFIRGKDK 364 S FI+ +D+ Sbjct: 346 KSPCFIKDEDE 356 >gi|461954|sp|P34029|DPO3B_SPICI RecName: Full=DNA polymerase III subunit beta gi|49347|emb|CAA79522.1| DnaN protein [Spiroplasma citri] gi|745457|prf||2016285B DNA polymerase III:SUBUNIT=beta Length = 363 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 160/348 (45%), Gaps = 23/348 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + ++R IL+ L RII +K IP +L++ + S + I I + Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--GTEVNISHGDSNFYLQSFPE 115 + GS+ + + +++RK++D F E+ G + I + + L + Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDE-----FITLEVVEGNLIKIKANNFDSVLNTLNS 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +++P E S+VLK ++ +T FA+ +E R NG+ ++ + +L A Sbjct: 116 ADYPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITA 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RL+ ++D +I+P K + EI R++S D ++ L I +N + Sbjct: 176 TDSFRLSCKKIDYSNNYN--FDVIIPGKFINEIGRLISENDQVSELLL----IIINCKQ- 228 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294 ++I+G++P+ VI S + L +N + + ++R S++S+ + V L + K Sbjct: 229 ----KIIEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQK 284 Query: 295 LCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341 + +T ++G E + + E I FN KY+L+ + + E+ Sbjct: 285 VLVTSFTQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTKEI 332 >gi|326329130|ref|ZP_08195458.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium Broad-1] gi|325953017|gb|EGD45029.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium Broad-1] Length = 379 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 97/399 (24%), Positives = 174/399 (43%), Gaps = 36/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + + A R + + + PV +L++A L + E + A Sbjct: 1 MKFRVDRDVFADAVAWAARSLPVRPSTPVLSGLLIEAGHEGLVLSTFDYETSARATLSAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V G VS LL DI R L K E+ G V+++ G + F LQ+ P + Sbjct: 61 VADEGKALVSGKLLADICRSLPA-------KPVEMVTDGARVSLTCGSARFSLQTMPVED 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P T E + + S + + V + A +++ L G+ I + L +ATD Sbjct: 114 YP-TLPEMPTAAGTVKSELFAHAVAQAVTAAGRDDMLPVLTGVRLEIEGSTISL--LATD 170 Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL+ E++ A + + +VP K +G+ + L+S S V ++LS + I Sbjct: 171 RFRLSHRELEWNPATPDESLAALVPAKVLGDTAKSLTS-GSEVTLALSTTGTGEGIIGFE 229 Query: 237 ---------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + RL+DGEFP +++ P + V+ +L ++V RV++++ R AV+ Sbjct: 230 GAAAGGVRRTTTRLLDGEFPKVRSLFPAEHLTTALVDKASLVESVKRVALVAE-RNTAVQ 288 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + L + + D +A ES+ + FN ++LL+ + + +D++VV Sbjct: 289 MVFEDGVLTLDAGSGDEAQASESIEATMEGEGLTTGFNPQFLLDGL------QAIDEQVV 342 Query: 348 -FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V I GK + + Y+LMP R+ Sbjct: 343 ELAFTQAPKPVVISGKPAEGGEEPGFR----YLLMPRRL 377 >gi|323342256|ref|ZP_08082488.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463368|gb|EFY08562.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix rhusiopathiae ATCC 19414] Length = 372 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 82/348 (23%), Positives = 159/348 (45%), Gaps = 15/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + L R + +P+ + + D L + AS I I + A+ Sbjct: 1 MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V G + + + + + VRKL D I F E G IS + + + Sbjct: 61 DENKLNVYEEGEVVLESRYILEAVRKL-DSDFIDF--EIIDGALTRISGNKAEYNINGSK 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P+ + F++ L ++++T F +T E R G+ F + + C V Sbjct: 118 AELYPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNFKADGNTMN-C-V 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA +D+ + +I +P + E+ + +S + V +++S+ + ++S Sbjct: 176 ATDSYRLAKKSIDLPTPMDF--NICIPAVNLYEVSKTISD-NKDVHIAVSDKLVQFYVDS 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG FP+ +IP EL VN ++ A+DR S + S VKL S++ Sbjct: 233 TLIQSRLIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEG 292 Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + ++ + ++G + E + + Y + I F+ +Y++E + + +D V Sbjct: 293 VLISSKSQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKTDTV 340 >gi|312126264|ref|YP_003991138.1| DNA polymerase III subunit beta [Caldicellulosiruptor hydrothermalis 108] gi|311776283|gb|ADQ05769.1| DNA polymerase III, beta subunit [Caldicellulosiruptor hydrothermalis 108] Length = 368 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 87/358 (24%), Positives = 169/358 (47%), Gaps = 29/358 (8%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 VL++A D ++ + ++++ A + G+ V A L DIV+KL G ++ +E Sbjct: 33 VLIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPSG-EVEVIRE 90 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 + +EV I F L + +FP ++ E +S + V++ FA + +E Sbjct: 91 D---SEVKIRSQKIEFRLPTLDPLDFPKMDKKPSESFCEFVASDFVDGVDKVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F E+D + V DGHRLA+ ++ +A S IVP + + +I +++ Sbjct: 148 TRPTFTGVLFEKEEDDF-VNLVGMDGHRLAICKIKPIAVEGNF-SKIVPAENLDDITKVV 205 Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 +++ V+VS E++ I S ++ + LI G+F +Y+ IP ++ ++ L Sbjct: 206 DIEEAEKVRVSFFENQATFEIGSTTVILTLIAGKFFDYKGAIPTEYSTKISISSDVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDM-GKAIESMNVYYNECPMDICFNYK 327 ++R SI+S IQAV ++ + TV + G+ E + + + FN K Sbjct: 266 LERASIVSKDEKTNIQAV--IFETNGMMFTVKSMSADGRYEEDVLCSVEGKDIRVGFNVK 323 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 Y L+++ + D E+ ++FI + S K + N Y+++P+++ Sbjct: 324 YFLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366 >gi|197302270|ref|ZP_03167329.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC 29176] gi|197298701|gb|EDY33242.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC 29176] Length = 369 Score = 89.0 bits (219), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 173/346 (50%), Gaps = 15/346 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I +I Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVVKLTANDMELGIETSIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I ++A + +IVRKL D ++++ E E + I+ + F + + +F Sbjct: 61 IVERGIIALNAKIFSEIVRKLPD-SEVTI--ETESDNQALITCEKAKFSIAAQSGDDFSY 117 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ E LK + +T F++A + + G F I E LK+ V+ D Sbjct: 118 LPAIESNDFITVSEFT---LKEAIRQTIFSIADNDTNKMMTGELFEITENVLKV--VSLD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 GHR+++ ++D+ + +IVP K + EI +I+ + ++ V++S +++ I + Sbjct: 173 GHRISIRKIDL-KDSYEPRKVIVPGKTLQEISKIIGGEAEAEVQISFTKNHIVFEFDRTV 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKL 295 + RLI+GE+ ++ + ++RVN L +DR +++ + + + + D + Sbjct: 232 VVSRLIEGEYFRIDQMLSSDYETKVRVNKRELLDCIDRATLLIKEGDKKPIIIDIKDDAM 291 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 M + +G E + + + I FN K+L++ + I +EV Sbjct: 292 QMMI-KSQIGSMDEVILCTKDGKDLMIGFNPKFLIDALRVIDDEEV 336 >gi|222528060|ref|YP_002571942.1| DNA polymerase III subunit beta [Caldicellulosiruptor bescii DSM 6725] gi|222454907|gb|ACM59169.1| DNA polymerase III, beta subunit [Caldicellulosiruptor bescii DSM 6725] Length = 368 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 167/358 (46%), Gaps = 29/358 (8%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 VL++A D ++ + ++++ A + GS + A LL DIV+KL G +E Sbjct: 33 VLIEAEDRII-FTTNDMKMQMQTEFEAEILERGSALLKAKLLSDIVKKLPSGDVEVIREE 91 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 NE V I F L + +FP + E +S + V++ FA + +E Sbjct: 92 NE----VKIRSQKIEFRLPTLEPLDFPKMDRKPSESFCEFVASEFVDAVDKVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F ++D + V DGHRLA+ ++ VA + S IVP + + +I +I+ Sbjct: 148 TRPTFTGVLFEKEDDDF-VNLVGMDGHRLAICKIKPVA-VEGSFSKIVPAENLDDITKIV 205 Query: 213 SSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 ++ V+VS E++ I S ++ + LI G+F +Y++ IP ++ ++ L Sbjct: 206 DIEEPEKVRVSFFENQATFEIGSTTVILTLISGKFFDYKSAIPTEYSTKISISSDVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDM-GKAIESMNVYYNECPMDICFNYK 327 ++R SI+S IQAV ++ + TV + G+ E + + + FN K Sbjct: 266 LERASIVSKDEKTNIQAV--IFETNGMMFTVKSVSADGRYEEDVLCSVEGKDIRVGFNVK 323 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 Y L+++ + D E+ ++FI + S K + N Y+++P+++ Sbjct: 324 YFLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366 >gi|184199648|ref|YP_001853855.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201] gi|183579878|dbj|BAG28349.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201] Length = 374 Score = 88.6 bits (218), Expect = 1e-15, Method: Compositional matrix adjust. Identities = 96/390 (24%), Positives = 178/390 (45%), Gaps = 24/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +VER + E + R + + +PV +L++A +G L I + + EI+ + S Sbjct: 1 MKFSVERDVLAEAVTWTARSLSPRPPVPVLSGLLIKAENGSLSIASF--DYEISARLTIS 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G+ VS LL DI R L A + E G +V ++ S F L + P ++ Sbjct: 59 ADVVEEGTTLVSGRLLADICRSLPS-APVQLEAE---GGKVTLTCRSSKFNLAAMPVDDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + S +A + V + + A + ++ L GI I E K+ +ATD Sbjct: 115 PQLPGLPEL-SGVVAGDEFAHAVAQVNIAASKDDTLPILTGIRMEIEGE--KMTLLATDR 171 Query: 179 HRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236 +RLA+ E+ + + ++ K + +I + L SS D ++ ++ + + Sbjct: 172 YRLAMRELTWRPTDPTISTAALIKAKTLNDIAKTLGSSGDVNMALAPNTELVGFESGGRR 231 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + LIDGE+P +++ P + V + L +AV RVS+++ R V+L+ S ++ Sbjct: 232 TTSLLIDGEYPKIRSLFPENTPITAVVRTSELVEAVRRVSLVAE-RNTPVRLAFSDGQVA 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + +A E ++ N + + FN YL E + S V F + Sbjct: 291 LDAGTGEDAQASEVLDAQLNGDEITVAFNPTYLSEGLHAFDS-----PFVRFSFTAPPKP 345 Query: 357 VFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 + +++ D ++ + K Y+LMP+R+ Sbjct: 346 AVLSAQEELDGEDTVEYK----YLLMPVRL 371 >gi|289523932|ref|ZP_06440786.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502588|gb|EFD23752.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 384 Score = 88.6 bits (218), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 76/313 (24%), Positives = 141/313 (45%), Gaps = 26/313 (8%) Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV-YSFELAS 134 +I++KL G F T+V I H + F ++P EFP E + + S Sbjct: 77 EILKKLSHG-----FTIEATNTKVTIRHEKNQFNFTTYPTEEFPKLPSSESAKLACRIKS 131 Query: 135 SVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 L + F +T EE YL+ LKL +ATDG RL+++E D++ Sbjct: 132 KDLSRSIREGSFTGSTNEEFPQYLSSALIEFKRNSLKL--IATDGKRLSLSEADLMEGST 189 Query: 194 KMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 + SI++P + + E+ RILS+ +DS +++ +S+ + + + +S+R ++ FP Y Sbjct: 190 EEDSILIPIRGINELERILSTLDEDSLIEILYDDSQCYFRGDDIELSIRRVESLFPPYDR 249 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIES 310 +I + ++ L A+++V ++ + + + L + L ++ ++G+ Sbjct: 250 IISSDRTTWMTIDRQALIDALEKVEVIVRDFNKVIIMDLKPAGNLSISAFAKNVGEGFVE 309 Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370 M + P+ + FN YLL+ + I DSS F G + K Sbjct: 310 MAAEVDGEPLKVGFNVAYLLQGLKAIG-------------DSSVRMSF-NGPHGQMRLQK 355 Query: 371 DNKVNAFYVLMPM 383 + N Y+LMP+ Sbjct: 356 ISSDNFLYILMPV 368 >gi|257062756|ref|YP_003142428.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM 20476] gi|256790409|gb|ACV21079.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM 20476] Length = 365 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 178/392 (45%), Gaps = 35/392 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +S+ L L + ++T+PV V + A L ++ + + I + A Sbjct: 1 MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + LL DIV+ L D A I+ ++ +E +S ++F L + +FPS Sbjct: 61 VEDEGMCVIPQKLLSDIVKNLPDAA-ITVDVDD---SEATVSCDKTSFTLHTLIPDDFPS 116 Query: 121 TKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E + F+ SS +K + + A + ++ R L G+ E + + VAT Sbjct: 117 FPEVNIDNQITVPFKQFSSAVKKVAK----AASKDQSRAVLTGVLLRTTPEGMSI--VAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RLAV + + + ++ V V E+ L ++ + LS +++ Sbjct: 171 DSYRLAVCNLKFDSAGEEFEAL-VTSSFVLEVAS-LPEVQETIDICLSANQVMFRFGDTV 228 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDK 294 M R I+G++P Y+ +I S + + L AV RV +MSS +K + ++ Sbjct: 229 MVNRRIEGKYPAYEKLIAGSYTTKTCYTTSALITAVKRVGLMSSAA-SPIKFDINEATKN 287 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS- 353 ++ ++ ++G A E ++ N ++I N++Y IID +SS + D V F S Sbjct: 288 TVLSTNSQEIGTASEVVSCEVNGENVEIALNHQY---IIDGLSS--ISTDHVFFETQGSM 342 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VF G+ +D Y+LMP+R+ Sbjct: 343 KPGVFRSGEGED----------FLYLLMPVRL 364 >gi|312621130|ref|YP_004022743.1| DNA polymerase III subunit beta [Caldicellulosiruptor kronotskyensis 2002] gi|312201597|gb|ADQ44924.1| DNA polymerase III, beta subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 368 Score = 88.2 bits (217), Expect = 2e-15, Method: Compositional matrix adjust. Identities = 90/358 (25%), Positives = 166/358 (46%), Gaps = 29/358 (8%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 VL++A D ++ + ++++ A + GS + A LL DIV+KL G +E Sbjct: 33 VLIEAEDRII-FTTNDMKMQMQTEFEAEILDRGSALLKAKLLSDIVKKLPSGDVEVIREE 91 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 NE V I F L + +FP + E +S + V++ FA + +E Sbjct: 92 NE----VKIRSQKIEFRLPTLDPLDFPKMDRKPSESFCEFVASEFVDAVDKVIFATSKDE 147 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 R G+ F ++D + V DGHRLA+ ++ VA S IVP + + +I +I+ Sbjct: 148 TRPTFTGVLFEKEDDDF-VNLVGMDGHRLAICKIKPVAVEGSF-SKIVPAENLDDITKIV 205 Query: 213 SSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 ++ V+VS E++ I S ++ + LI G+F +Y++ IP ++ ++ L Sbjct: 206 DIEEPEKVRVSFFENQATFEIGSTTVILTLISGKFFDYKSAIPTEYSTKISISSDVLEST 265 Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDM-GKAIESMNVYYNECPMDICFNYK 327 ++R SI+S IQAV ++ + TV + G+ E + + + FN K Sbjct: 266 LERASIVSKDEKTNIQAV--IFETNGMMFTVKSVSADGRYEEDVLCSVEGKDIRVGFNVK 323 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 Y L+++ + D E+ ++FI + S K + N Y+++P+++ Sbjct: 324 YFLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366 >gi|222823048|ref|YP_002574621.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100] gi|222538269|gb|ACM63370.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100] Length = 355 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 84/344 (24%), Positives = 168/344 (48%), Gaps = 23/344 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++ + + +++K++ ++ H+L + D L I+AS EI I I Sbjct: 1 MKISVNKNTLESAIVLTNSYVDKKDSSNIASHLLFEVVDDKLIIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + DI++ L + I EN L I + + L F +FP Sbjct: 61 KVENSGFATANAKSILDIIKSLNNEDVILETIENFLF----IRQKGTKYKLPMFNYEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ A+ T +Y LNG I + V TD Sbjct: 117 NFPSTEGKDKFDIDSSDLSRSLKKILPAVDTNNPKYSLNGALLDIKTTHINF--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++ ++ K ++ +P+KA+ E+ +I K +++ E+ + ++ Sbjct: 175 RLAVFTLNKTSE--KEFNLCIPKKAILEMQKIFFEK---IEIYYDENMLIAKNDNFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + KE + + A+ ++++++ + +KL DKL Sbjct: 230 KLINDKFPDYERVIPKNITKEFIFKTEDFQDALKKINVIT----EKMKLIFHKDKLVFEG 285 Query: 297 MTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSD 339 +++DN + +E +NV + ++C K++ + +++I S+ Sbjct: 286 ISLDNMEAKTELEMELNV---DEEFNLCIKNKFITDFLNSIESE 326 >gi|311742164|ref|ZP_07715974.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum DSM 15272] gi|311314657|gb|EFQ84564.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum DSM 15272] Length = 380 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 96/395 (24%), Positives = 178/395 (45%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + R + + ++PV +L++A+ L + E +PA Sbjct: 1 MKFRIDRDTFADAVAWTARSLPLRPSVPVLAGLLVEASAEGLTLSGFDYETSTRATLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G VS LL +IV+ L + I + GT+VN++ G + F LQ+ P E+P Sbjct: 61 VSDEGRALVSGRLLSEIVKSLPN-KPIDVALD---GTKVNLTCGSARFALQTMPVEEYPR 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + V++ A +E+ L GI + + L +ATD R Sbjct: 117 LPQMPTATG-TVKADLFATAVQQAGAAAGRDEMLPLLTGIRLELEGSTISL--MATDRFR 173 Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHL-NIESL-- 235 ++ ++D + + + + +VP K + E R L S D +V VS ++ L E + Sbjct: 174 ASLRDLDWYPEASDLSAQALVPAKVLNETARSLQSGGDITVAVSSGQTGDGLIGFEGVVG 233 Query: 236 ----SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL++G+FP + + + VN ++V RVS+++ R V+L+ + Sbjct: 234 NGTRRTTTRLLEGDFPRVRQLFQAQAETVAYVNTQEFVESVKRVSLVAE-RNTPVRLTFA 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + + D +A ES+ + I FN YLLE + + SD VV + F Sbjct: 293 DGVLLLEAGSGDEAQASESLEATIEGNDISIGFNPGYLLEGL-GVMSDPVV--HLSFTQH 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 + +++ G+ + AF Y++MP+R+ Sbjct: 350 TKPAAISGVGETGAEPD------GAFRYLIMPVRL 378 >gi|257067225|ref|YP_003153480.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810] gi|256558043|gb|ACU83890.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810] Length = 374 Score = 87.8 bits (216), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 97/392 (24%), Positives = 182/392 (46%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--P 58 MK ++R + + + A R + + +P+ V + A+ G E++ S + E++ I Sbjct: 1 MKFHLDRGVLGDAVSWATRTLPVRPAMPILQGVRIVADAGG-ELQLSTFDYEVSAQIRLE 59 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A VD G + V +L DIVR L + +S E GT++ + G + F L + P E+ Sbjct: 60 AEVDQPGEVLVQGRMLSDIVRALPN-KDVSVALE---GTKLQVRCGSARFALATLPVEEY 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P V +A+ V + + A + ++ L G+ I+ E + L +ATD Sbjct: 116 PQLPTMPPVAG-AVAADVFSEAIAQVTVAASKDDTLPLLTGVKVEISGETMTL--MATDR 172 Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSE----SRIHLNIE 233 +RLA+ E+ + +V + + E+ R L++ V+++LSE + I Sbjct: 173 YRLALRELTWNPTTPGTELTALVRGRTLHEVARSLATG-GGVEIALSEDDSATLIGFEAG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + L+DGE+P + + P ++ V +L AV RVS+++ R V+LS + Sbjct: 232 GRRTTSTLVDGEYPPVRRLFPDTSAITAVVATASLIDAVKRVSLVAE-RNTPVRLSFTEG 290 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + D +A E + + + + FN +LL+ + + ++ + F DS Sbjct: 291 QVALEAGAGDDAQASEVLEAHLEGEDLVVGFNSGFLLDGLGALGTEFA---RLTFT-DSI 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SV + G+D + D+ Y++MPMRI Sbjct: 347 KPSV-MTGQDS-LEGAPDSSYK--YLIMPMRI 374 >gi|146295087|ref|YP_001178858.1| DNA polymerase III, beta subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408663|gb|ABP65667.1| DNA polymerase III, beta subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 367 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 12/273 (4%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+ V A LL DIV+KL G I +E+ EV I F L + +FP + Sbjct: 64 GAALVKAKLLSDIVKKLPSG-DIEIIRED---NEVKIRCQKIEFRLPTLDPLDFPKMDRK 119 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E A++ ++ +++ FA + +E R G+ F + + L V DGHRLA+ Sbjct: 120 PIDSFCEFAANEFEDAMDKVIFATSKDETRPTFTGVLFEREGDSVNL--VGMDGHRLAIC 177 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLID 243 ++ + ++ S IVP + + +I +I+ +++ V+VS E++ I S S+ V LI Sbjct: 178 KLKPI-EVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIVTLIS 236 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS---SVRIQAVKLSLSSDKLCMTVD 300 G F +Y+NVIP ++ ++ L ++R SI+S +QAV +S + Sbjct: 237 GRFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFRVMSY 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 + D G+ E + + I FN KY L+++ Sbjct: 297 STD-GRYEEDVLCDVEGKDIRIGFNVKYFLDVL 328 >gi|307128509|ref|YP_003880539.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri CARI] gi|306482971|gb|ADM89841.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri CARI] Length = 375 Score = 87.4 bits (215), Expect = 3e-15, Method: Compositional matrix adjust. Identities = 82/343 (23%), Positives = 157/343 (45%), Gaps = 8/343 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 MK +D+ L +I +P+ L + +L I S EI + I Sbjct: 1 MKFISSSNDLFRSLKSIYNVININKKLPILETFLFKIKKKNILNITVSDLEITMRTQIKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + + +L +I++K+ + ++F KE + ++ +G+ N + + E+P Sbjct: 61 NSINFGSAAIPSKILIEILKKIPEQP-LTFIKEIDNKLKIISQNGEYN--ISIYSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E SF ++ L ++ T FA+ ++IR +NG+FF IN ++TD + Sbjct: 118 KYSKLEKTDSFFISEKKLLKIINYTLFAVGNDDIRPVINGVFFEINYNISSF--ISTDTN 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + + K II + + + D SV + ++ ++ + Sbjct: 176 LLVKYSIKEIFSKKKFFFIIPKKPLNLLKNNLNYT-DKSVLIEYNKYNTSFLFQNKKLIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMT 298 LI+G +PNY ++I + +K L +N ++ RV + S++ + L+ S S + Sbjct: 235 TLINGNYPNYLSIINNNYNKILIINKNYFINSIKRVILFSNLLTSQILLNFSKSQSKISS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 D KA E + +Y P++I FN KYL+EI+ NI+ D++ Sbjct: 295 WDINSNNKAFEYLFCHYEGDPIEIGFNSKYLIEILSNINCDDI 337 >gi|239916573|ref|YP_002956131.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665] gi|281414963|ref|ZP_06246705.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665] gi|239837780|gb|ACS29577.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665] Length = 374 Score = 87.4 bits (215), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 94/390 (24%), Positives = 178/390 (45%), Gaps = 25/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K TVER + + + A R + + +PV +L+ A G++ I + E I A Sbjct: 4 VKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 V+ G + VS LL DIVR L AQ++ EL G +V ++ S F L + P ++P Sbjct: 64 VETAGQVLVSGRLLNDIVRSLPQ-AQVTV----ELDGGKVLVTCRSSRFSLATMPVGDYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + + + + V + A + ++ L + I + + +ATD + Sbjct: 119 ALPELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITF--LATDRY 175 Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ E+ A + S+++ + + E+ + L S D + + + + Sbjct: 176 RLAMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRT 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DGE+P +++ P S+ + V+ L +A RV++++ R A+++ + ++ + Sbjct: 236 TSVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAE-RNTALRMVFTEGQVTL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVVFRLDSSNSS 356 D A ES+ + + FN YL E + VVD +V F S+ Sbjct: 295 DAGTGDDASANESVPCTLEGEDITVAFNPSYLSEGL------AVVDQPQVRFAFTSAPKP 348 Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 + G N +D V+ + Y++MP+RI Sbjct: 349 ALLTG-----VNQEDGVVSDYRYLVMPVRI 373 >gi|315639364|ref|ZP_07894526.1| DNA-directed DNA polymerase III beta subunit [Campylobacter upsaliensis JV21] gi|315480690|gb|EFU71332.1| DNA-directed DNA polymerase III beta subunit [Campylobacter upsaliensis JV21] Length = 355 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 82/344 (23%), Positives = 168/344 (48%), Gaps = 21/344 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI + ++ + + +++K+ V+ H+L +AN+ L IKAS EI I I Sbjct: 1 MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T +A + D+++ L + I +N L I ++ + L F +FP Sbjct: 61 RIENPGFATANAKSIADVIKNLNNEEIILETIDNFLF----IRQKNTKYKLPMFNYEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG + I E K+ V++D Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ I +P+KA+ E+ ++ K +++ E+ + E+ Sbjct: 175 RLAIYTLNKTND--NEFHISIPKKAIMEMQKLFYEK---IEIYYDENMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP +E + + A+ ++S+++ +++KL + +K+ Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFTLQTEDFIDALKKISVVT----ESMKLHFTKNKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 +++DN + +E N+ + I KYLL+ +++I +E Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKI--KYLLDFLNSIEENE 327 >gi|297564208|ref|YP_003683181.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848657|gb|ADH70675.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 384 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 83/356 (23%), Positives = 156/356 (43%), Gaps = 27/356 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R E + R + + +PV + ++ + + SG + E++ AS Sbjct: 1 MKLRVDRDAFAEAVAWTARALPTRPAVPVLSGIRMELSPDGASLHLSGFDYEVS--TRAS 58 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 VDV G+ V LL +IVR L G+ + G ++ I G + F L + P Sbjct: 59 VDVLSEEPGAALVPGRLLAEIVRNLPSGS----VHIDSDGPKLRIVGGAARFTLITMPLE 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ +A+ V + A + ++ L G++ + + L L VAT Sbjct: 115 DYPTLPGMPGRIG-SVAADAFAAAVRQVAPAASRDDTLPMLTGVYLDFSGDTLSL--VAT 171 Query: 177 DGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRIL------------SSKDSSVKVSL 223 D +R+AV E+ + + + +VP + + + +R L +S V +S Sbjct: 172 DRYRIAVRELWWSPEDQGLDAAALVPARTLSDTVRGLLTKSNVDIALSTASGGEGVSLSP 231 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 E I + RLID EF Y P V T L +AV RV++++ R Sbjct: 232 GEGMIGFENGERRTTTRLIDSEFVKYAAWFPKEFSARAEVAVTPLAEAVKRVALVAD-RN 290 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 ++L+ S ++ + + + +A+E++ V Y P+ + F YL++ + + +D Sbjct: 291 TPLRLAFSEGEVVLEAGSGEDAQAVEAIEVGYEGEPLRLAFRPDYLMDGLAGVETD 346 >gi|148271180|ref|YP_001220741.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829110|emb|CAN00007.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 383 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 83/348 (23%), Positives = 164/348 (47%), Gaps = 15/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R E + A +++ ++ T+P+ VL++A + L + + E+ I A Sbjct: 1 MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + VS LL DI +L + A + F E+ +++ +S G ++F L S P E+P Sbjct: 61 IEEPGRVLVSGRLLADIANRLPN-APVRFTTED---SKITVSCGSAHFTLLSMPVEEYP- 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T + S L + V + A + +++ + G+ + E L L +ATD +R Sbjct: 116 TLPQISEQSGLLPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDS-SVKVSLSESR--IHLNIE 233 +AV E+D + + +VP + + EI + + SV ++ ++ R I + + Sbjct: 174 VAVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHSGTISVAITDTDDRQLIAFSAD 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +++ LI G FP + + P + D +N +L +A RV ++ R A++ + S D Sbjct: 234 RKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVLE-REAALRFTFSID 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 L + + +A ES++ + ++LL+ + + S+ V Sbjct: 293 GLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFV 340 >gi|283782561|ref|YP_003373315.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05] gi|283441379|gb|ADB13845.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05] Length = 374 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + ++A +G L++ A +I I A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI + L+ DI + L A+ ++ K + I+ G S F LQ P E+P Sbjct: 61 VDEEGSILILGKLMADITKSLP--AEKTYLKSE--NNTLTITSGKSTFTLQLMPLGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ + V + + + EE R L GI I ED + +TD R Sbjct: 117 LPELPHKLG-QVDAPTFIQAVNQASVSTSREENRPVLTGI--RIQFEDDTVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSM-- 237 L+ + + + S + R G +LR I S D V IH N E S+ Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTR---GSLLRDIAHSLDDHQNVI-----IHFNEEDKSLLG 225 Query: 238 --------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + ++IDGEFP+ + +N L A+ RVS+++ R +++ Sbjct: 226 FENSGRTSTSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVAE-RNAPIRMI 284 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S+ +L ++ D +A E +++ + + + FN YLLE + I + V + Sbjct: 285 FSNQELTLSAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMK 339 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ V G+ +++ D + Y+L+PMR Sbjct: 340 MATAVKPVEFNGQ---QESDGDESTDYRYLLVPMRF 372 >gi|269954812|ref|YP_003324601.1| DNA polymerase III subunit beta [Xylanimonas cellulosilytica DSM 15894] gi|269303493|gb|ACZ29043.1| DNA polymerase III, beta subunit [Xylanimonas cellulosilytica DSM 15894] Length = 377 Score = 87.0 bits (214), Expect = 4e-15, Method: Compositional matrix adjust. Identities = 89/392 (22%), Positives = 173/392 (44%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK V+R + + + R + + PV V ++A+ G++ + + E+ IPA Sbjct: 1 MKFRVDRDVLADAVTWTARTLPTRPPAPVLAGVRIEADATGVISLSSFDYEVSARSEIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V G++ VS LL DI R L +S GT+V ++ G S F L + P ++ Sbjct: 61 EVSEPGTVLVSGRLLADIARALPHKPVDVSLE-----GTKVVVTCGASRFTLLTMPVEDY 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + S ++ L V + A + +E L G+ I E + L ++TD Sbjct: 116 PTLPQMPEL-SGTVSGDALTLAVTQVSVAASRDETLPLLTGVRMEIEGERITL--LSTDR 172 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIE 233 +RLA+ E+ ++ +V K + ++ + L + V V LS I Sbjct: 173 YRLALRELTWTPATPGFSAVALVKAKTLIDVAKSLGAGGGLVNVGLSTGSGLDLIGFEAG 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +L+DG++P + + P + V L A RVS+++ R ++L+ + Sbjct: 233 GRHTTSQLVDGDYPAVRRLFPDATPIHAVVPTQALIDAARRVSLVAE-RNTPIRLAFTEG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + D +A E++ + + FN ++LL+ + + + D V Sbjct: 292 QVVLDAGQGDDAQASEALEAVLVGEDITVAFNPQFLLDGLTALGT-----DFVRLSFTHP 346 Query: 354 NSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMR 384 N V G++ D +++ D + Y+L+P+R Sbjct: 347 NKPVEFTGQESLDGEDSSDYR----YLLVPIR 374 >gi|57506227|ref|ZP_00372146.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195] gi|57015495|gb|EAL52290.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195] Length = 355 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 82/344 (23%), Positives = 168/344 (48%), Gaps = 21/344 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI + ++ + + +++K+ V+ H+L +AN+ L IKAS EI I I Sbjct: 1 MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T +A + D+++ L + I +N L I ++ + L F +FP Sbjct: 61 RIENPGFATANAKSIADVIKNLNNEEIILETIDNFLF----IRQKNTKYKLPMFNYEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG + I E K+ V++D Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ I +P+KA+ E+ ++ K +++ E+ + E+ Sbjct: 175 RLAIYTLNKTND--NEFHISIPKKAIMEMQKLFYEK---IEIYYDENMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP +E + + A+ ++S+++ +++KL + +K+ Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFALQTEDFIDALKKISVVT----ESMKLHFTKNKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 +++DN + +E N+ + I KYLL+ +++I +E Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKI--KYLLDFLNSIEENE 327 >gi|325108904|ref|YP_004269972.1| DNA polymerase III subunit beta [Planctomyces brasiliensis DSM 5305] gi|324969172|gb|ADY59950.1| DNA polymerase III, beta subunit [Planctomyces brasiliensis DSM 5305] Length = 369 Score = 87.0 bits (214), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 81/354 (22%), Positives = 152/354 (42%), Gaps = 37/354 (10%) Query: 35 LQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 L D + ++ PE+E TG+ G + + L I+R++ I+ ++ Sbjct: 44 LMGTDTEIGMRYQIPEVE-TGS-------SGEVLLPTQRLVSILREVVS-PDITLQVSDD 94 Query: 95 LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 L + ++ G S F L EFP F + LK ++R FA E R Sbjct: 95 L---LEVTAGQSEFRLPVEDPREFPDVAPFNAETYFRVPGHALKQAIKRVIFAADDESTR 151 Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRIL 212 Y L G+F ++ L A TD RLAV E+ A+ +++ + ++PRKA+ + R + Sbjct: 152 YALGGVFMELSANGAVLAA--TDSRRLAVVEIPATAEGDVSETITAVIPRKAMTLLERSI 209 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 DS + ++ + S + RL++G FPN+++V+P ++ + + V Sbjct: 210 DGDDSEILIAPGDHDAVFRSGSCMIYTRLVEGRFPNFRDVVPSNSTVTIDMVAGPFHNLV 269 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + I++S + V + + D+G++ M + Y+ + I F+ +++ E Sbjct: 270 RQSQIVTSDESRGVDFVFREGSVLLKSRAADVGESKVEMPIDYSGDELAIMFDPRFVSEF 329 Query: 333 IDNISSDEVVDDEVVFRL---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + V+D E L + +VF G+D YV+MP+ Sbjct: 330 L------RVLDAETTVNLGLTGGEDPAVFRSGEDYR------------YVIMPL 365 >gi|309804032|ref|ZP_07698113.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|308163800|gb|EFO66066.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 11V1-d] Length = 274 Score = 86.7 bits (213), Expect = 5e-15, Method: Compositional matrix adjust. Identities = 64/267 (23%), Positives = 133/267 (49%), Gaps = 11/267 (4%) Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164 +S+F + +P E SF ++ K ++ T FA+A +E R LNG+ F Sbjct: 4 NSDFTINGLDADNYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDF 63 Query: 165 NEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS 224 N +++ A+ATD HRL+ + + A ++++P ++ E+ +I++ D V V Sbjct: 64 NPKEIN--AIATDSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPG 121 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283 E+++ I +++ RL++G +P+ + +IP + ++ L ++++RVS+++ R Sbjct: 122 ENQVLFKIANINFYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRN 181 Query: 284 QAVKLSLSSDK--LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDE 340 VK+ L+ + + ++ D+ ++G E + N ++I FN YL + + +S Sbjct: 182 NVVKMYLNVEDQIIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS--- 237 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSK 367 + D +V + + KD D K Sbjct: 238 -ITDSIVIKFTKPLRPFVVVPKDSDEK 263 >gi|149180587|ref|ZP_01859091.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] gi|148851740|gb|EDL65886.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] Length = 374 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 74/351 (21%), Positives = 164/351 (46%), Gaps = 18/351 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M+ ++ + + L R+I ++PV V ++A+ L + ++ I I Sbjct: 1 MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60 Query: 58 ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G + V +++++K+ D +F K + +V I+ G+ L Sbjct: 61 QADAGRIIAPGKLVVPVRYFHNLIKKMPDD---TFIKIKKFNKQVKITSGEIETTLSLLN 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E ++P E + S+L ++++T FA++ + R L G+ + +E L L + Sbjct: 118 EEDYPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTL--I 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 AT+ R+A+ + + + + S I+P KA+ E++ + K +++ S++ + + Sbjct: 176 ATNSQRMAMRKAAMSSPVTG--SFILPGKAMTELVNAI-DKHQFIQIYPSDNLVIFQADD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 L + RLI G +P+ +IP E+ V+ L Q + R ++++S + V SL+++ Sbjct: 233 LFLYTRLISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNE 292 Query: 294 -KLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEV 341 ++ +T ++G E + + + I F+ K+L E + ++S + V Sbjct: 293 GRIQLTSSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMSEELV 343 >gi|227485758|ref|ZP_03916074.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227236313|gb|EEI86328.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 370 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 83/336 (24%), Positives = 156/336 (46%), Gaps = 21/336 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ ++++ L R + + I + + + L + + EI I A Sbjct: 1 MKFEIKQKELMKALNIVNRAVSKSTNIQIHELIYFSTENNRLSMTSFDGEISIKTLADAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP-----E 115 + G + V A L+ +I+RKL D K G ++ IS SNF L +F E Sbjct: 61 IIKEGVMAVKADLITNIIRKLPD----ELVKIELDGGKIKISCKRSNFNLVAFEYFDKEE 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 P+T + + + LK + +T FA +E + L GI F + E L + VA Sbjct: 117 INIPNT------VALSIDNDKLKRSISQTEFATTLDETKLALTGILFELKEGCLNM--VA 168 Query: 176 TDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 DG+R+A+ ++ + + I+P++++ E RI+S DS + +E+ + E Sbjct: 169 LDGYRVALKKIKLDYPGDFEDTEYIIPKRSLLEWSRIVSD-DSKTSLYRNENDLLFASED 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 M ++ID F +Y+N+I ++ + V + L A+DR ++S R +++++ D Sbjct: 228 TIMLCKVIDKNFIDYRNIINDISETTVLVEKSALIAALDRAQVLSDPGRANLIRVNI-ED 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 + N ++G E + + +DI FN KY+ Sbjct: 287 RAMTLRSNSEIGDVKEVIEIDQEGEGLDIAFNAKYM 322 >gi|327334559|gb|EGE76270.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL097PA1] Length = 410 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 98/403 (24%), Positives = 181/403 (44%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I +ER + E + A R + + T+P+ +L++A D + + AS E +PA Sbjct: 25 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAQDDSVVMSASDNETSAQITLPAQ 84 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G VS LL +I R L + QI+ ++++ G + F LQ+ P E+P Sbjct: 85 VDKPGESLVSGKLLAEIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 139 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + ++V V + A +E+ G+ IN E L L +ATD + Sbjct: 140 DLPQMP-AATGTVDANVFSRAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRY 196 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 R+A+ EV + +VP K + E R ++S + V V+LS E + + Sbjct: 197 RMALKEVTWNPSATDAEATALVPAKVINETARSMTSGE-HVTVNLSSGDSGEGLVGFEGD 255 Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ Sbjct: 256 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVHRVSLVAE-RNTPLRMV 314 Query: 290 LSSDKLCMTVDNPDMGKAIESM-----NVYYNECPMDIC-FNYKYLLEIIDNISSDEVVD 343 ++ D + ++ D +A E++ N E + FN +YL + + + + Sbjct: 315 INDDSIALSAATGDQAQASEAIEAVVTNHVDGESTITAAGFNPQYLSDALGALDT----- 369 Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 370 PYVHFSFTAPGKPCLVTGLNDLDGKPETDYR----HVIMLMRL 408 >gi|187918303|ref|YP_001883866.1| DNA polymerase III, beta chain [Borrelia hermsii DAH] gi|119861151|gb|AAX16946.1| DNA polymerase III, beta chain [Borrelia hermsii DAH] Length = 386 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 81/331 (24%), Positives = 155/331 (46%), Gaps = 20/331 (6%) Query: 17 ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76 A II +N + +LL+ + L IKA+ I IP + ++A D Sbjct: 20 AKSIILNRNINDIWSAMLLEVENSNLTIKATDRNIFFESTIPIVSTENFKVLINASNFSD 79 Query: 77 IVRKLQDGAQISF-FKENE-----LGTEVNISHGDSNFYLQ--SFPESEFPS----TKEE 124 V+ L ++ F+E+E +G N S +N +L +F + S E Sbjct: 80 AVKALNLYNELKIKFREDENRLNIIGESENKSENCTNDHLSEPTFSNEDIESYNYDINGE 139 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 Y ++ +L K ++ + F+ + +E + LNGI+F N+ D L V+T+ HR++V Sbjct: 140 TYNFTVDLNQKEFKKIINKISFSASHDESKNVLNGIYFTKNK-DSTLTLVSTNSHRMSVY 198 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + ++V + + + IVP K +L+ + + +K+ +S+ + ++ + ++ LI+G Sbjct: 199 KTELVFE--EDINFIVPVKMFN-LLKQMMIGEGMIKLKVSDKKFYVEFNNYKIACSLING 255 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +P+Y+++IP V + L+ + RV+ + R + V L+ SS +L + ++P Sbjct: 256 NYPDYESIIPNEQQNRSLVEISVLKDRLARVNSYTDKRSKKVILNFSSKQLRLMAEDPIT 315 Query: 305 GKA----IESMNVYYNECPMDICFNYKYLLE 331 G+ I+ N Y I N YL E Sbjct: 316 GRKGEFFIQDPNYDYEGSEEAIAINSAYLTE 346 >gi|291521106|emb|CBK79399.1| DNA polymerase III, beta subunit [Coprococcus catus GD/7] Length = 367 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 77/354 (21%), Positives = 167/354 (47%), Gaps = 31/354 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S +L + + + + T+P+ +L+ G++++ A+ ++ I + Sbjct: 1 MKIICNKSALLTGVNTVLKAVPARTTMPILECILIDTTSGVIKLTANDMDLGIETTVDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN----------FYL 110 V G I + A L +IVRKL D +EV I D+N F + Sbjct: 61 VLDKGCIALEAKLFSEIVRKLPD-------------SEVTIETDDNNKALIKCEKAKFNI 107 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 +F + E E + L+ LK ++ +T F+++ E ++G I+++ L+ Sbjct: 108 AGKDGEDFVALPEIEKTHFITLSQFSLKEIIRQTIFSISDNESNRMMSGELLQIDQDQLR 167 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIH 229 L V+ DG R+++ ++ + + ++I P K + EI +ILS D V++ ++ + Sbjct: 168 L--VSLDGQRISIRKISLKESYDPIKAVI-PGKTLNEISKILSGDMDDDVRIYFTDRHVL 224 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM--SSVRIQAVK 287 + + RL++GE+ +I + ++ +N L+ ++R S++ S R + + Sbjct: 225 FEFDQTVVVSRLLEGEYFQIDKMISSDYNTKITINKKELQGCIERASLLIRESER-KPII 283 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 ++++ + M + + MG E +++ + I FN K++L+ + I +E+ Sbjct: 284 INVTDGSMEMKIQSA-MGSMNEDIDISKEGRDIMIGFNPKFILDALRVIDDEEI 336 >gi|57504598|ref|ZP_00370710.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228] gi|305432570|ref|ZP_07401731.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli JV20] gi|57019493|gb|EAL56187.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228] gi|304444281|gb|EFM36933.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli JV20] Length = 355 Score = 86.7 bits (213), Expect = 6e-15, Method: Compositional matrix adjust. Identities = 79/344 (22%), Positives = 171/344 (49%), Gaps = 21/344 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+++ ++ + + +E+K++ ++ H+L +A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLLFEADEDKLIIRASDFEIGINYKIRKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESGGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F++ SS L +++ ++ T +Y LNG F I + ++ V TD Sbjct: 117 NFPKTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--RINFVGTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++ + I +P+KA+ E+ ++ K +++ E+ + ++ Sbjct: 175 RLAVYTLEKTNN--QEFHISIPKKAIMEMQKLFYEK---IEIYYDENMLIAKNDNFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL+ + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELKFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 +++DN + +E E ++I KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIETGVSEEFNLNI--KIKYLLDFLTSIEEEQ 327 >gi|86150533|ref|ZP_01068757.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85838985|gb|EAQ56250.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 355 Score = 86.3 bits (212), Expect = 7e-15, Method: Compositional matrix adjust. Identities = 79/346 (22%), Positives = 167/346 (48%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G TV+A + D+++ L + I +N L I + + L F +FP Sbjct: 61 RVESSGFATVNAKSIADVIKSLNNEEVILETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329 >gi|242310228|ref|ZP_04809383.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489] gi|239523525|gb|EEQ63391.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489] Length = 355 Score = 86.3 bits (212), Expect = 8e-15, Method: Compositional matrix adjust. Identities = 82/346 (23%), Positives = 174/346 (50%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M IT++ S + + +++K++ ++ H+ L+ D L KA+ E+ + + Sbjct: 1 MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G TV+ + DI+++L++G +++ + NE ++I S+F L F EFP Sbjct: 61 TINEQGIATVNGKQILDIIKRLKEG-EVNLYTNNE---NLHIKQNKSSFKLPMFNAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E E + E+ S L + +++ + + LNG I E VATD Sbjct: 117 TFPEYETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKEYSYNF--VATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + D + ++I P+KA+ EI R+ ++++ +E I + ++ Sbjct: 175 RLAMVKFDNAS--GNNLALIFPKKAITEIQRLFF---DNIELFYNERNIIIKSQNYIFFS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 LI+G+FP+Y+ ++P EL + +++ ++ + +++SV VKL+ +++ Sbjct: 230 HLINGKFPDYEKILPKEIQTELVLQKSSI---IEGIKVINSVT-NDVKLTFRPNEILFES 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ DN + IE +N+ E ++I N +++L+ + I S E + Sbjct: 286 LSQDNSEAQTQIE-INLPITE-EIEIGINSRHVLDFLSQIDSVEFI 329 >gi|224418814|ref|ZP_03656820.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT 98-5491] gi|253826662|ref|ZP_04869547.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT 98-5491] gi|313142333|ref|ZP_07804526.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491] gi|253510068|gb|EES88727.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT 98-5491] gi|313131364|gb|EFR48981.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491] Length = 355 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 81/346 (23%), Positives = 172/346 (49%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I ++ S + + +++K++ ++ H+ L+ + L KA+ E+ + + Sbjct: 1 MNIIIQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRENQLICKATDFEMGLCSTTNSL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G TV+ + DI+++L++G +I+ + NE ++I S+F L F EFP Sbjct: 61 TINEQGIATVNGKQILDIIKRLKEG-EINLYTNNE---NLHIKQNKSSFKLPMFNAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E E + E+ S L N +++ + T + LNG I E VATD Sbjct: 117 SFPEYETLPKLEINSLELINSMKKIFPVIDTNNQKRELNGALLDIKEYSYNF--VATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + + ++I P+KA+ EI R+ +++ +E I + ++ Sbjct: 175 RLAMVKFENPS--GNNLALIFPKKAITEIQRLFF---DHIELFYNEKNIVIKSQNYVFFS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 LI+G+FP+Y+ ++P EL + T + ++ + +++SV VK++ +++ Sbjct: 230 HLINGKFPDYEKILPKEIQTELTIPKTKI---IEGIKVINSVT-NDVKITFKPNEIFFES 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ DN + IE +N+ E ++I N +++L+ + I + + + Sbjct: 286 LSQDNSEAQTQIE-INLPITE-EIEIGINSRHVLDFLSQIETTDFI 329 >gi|302384446|ref|YP_003820268.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1] gi|302195074|gb|ADL02645.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1] Length = 373 Score = 85.9 bits (211), Expect = 9e-15, Method: Compositional matrix adjust. Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 51/400 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T ++ +IL + + + K T+ + + + A+ +++ A+ E+ I + + Sbjct: 1 MKLTFKQDEILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I + A LL +IVRKL E++ IS +S F++Q EF Sbjct: 61 ILERGKIALEAKLLSEIVRKLSSAGDSLVTIESDEKFTTTISCENSVFHIQGRDGEEFAY 120 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + + Y+ L+ LK ++ +T F++A + + G F + LK+ V+ D Sbjct: 121 LPYIERDHYIC---LSQFSLKEVIRQTIFSIAPNDSNKMMTGELFQVTGNQLKV--VSLD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 GHR+++ +++ + +IVP K + E+ +IL + V + S + I + Sbjct: 176 GHRISIRNIELKDTYHDI-KVIVPGKTLNEVSKILGGDSEKEVLIFFSTNHILFEFDDTI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-- 294 + RLI+GE+ ++ + + VN L +DR +I+ VR +DK Sbjct: 235 VVSRLIEGEYFRIDQMLSSDYETKTSVNKRQLLDCLDRATIL--VR--------ENDKKP 284 Query: 295 LCMTVDNPD----MGKAIESMN----VYYNECPMDICFNYKYL---LEIIDNISSDEVVD 343 L M +++ + M + SMN ++ + I FN K+L L IID D Sbjct: 285 LIMNIEDQEMELKMNSSFGSMNAQVPIHKTGSDIMIGFNPKFLIDALRIID--------D 336 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +EV + + S FIR D + Y+++P+ Sbjct: 337 EEVTLYMLNPKSPCFIR----------DEEGKYIYLILPV 366 >gi|284030634|ref|YP_003380565.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836] gi|283809927|gb|ADB31766.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836] Length = 382 Score = 85.9 bits (211), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 79/386 (20%), Positives = 161/386 (41%), Gaps = 28/386 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I E+ ++ E + R + + PV VLL A I + I + S Sbjct: 1 MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGTTIAGTDQAIANRAGLACS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 VD G+ +L +IV+ L G+ + + + ++ G + + L P EF Sbjct: 61 VDEPGTCLAPGRMLAEIVKLLPPGS----LRLETVDNALVLTSGTATYALPLMPVEEFAP 116 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ +E +S E+ V + + +++ L+GI + ++L V+TD Sbjct: 117 LPALPDE---HSAEVEPEEFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVEL--VSTD 171 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV----------SLSESR 227 +RL +A V + A + ++VP K + +++R S+ +++ ++ Sbjct: 172 RYRLGIARVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDAT 231 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 L S +R++ G + Y+ +IP + +LR + LR+ V R++++++ + + Sbjct: 232 FGLRNAVRSTCLRVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVAA-GMTPIW 290 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L+ D L + +P E++ P+ I F L + I + + ++ V Sbjct: 291 FDLTGDDLRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTSQLC---VA 347 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNK 373 F + V I G D D + Sbjct: 348 F--AGARKPVLITGATADGAPAGDYR 371 >gi|225548655|ref|ZP_03769702.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a] gi|225370685|gb|EEH00121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a] Length = 385 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 81/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + YL+ +F E Sbjct: 70 KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDYLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLAFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347 >gi|268678646|ref|YP_003303077.1| DNA polymerase III subunit beta [Sulfurospirillum deleyianum DSM 6946] gi|268616677|gb|ACZ11042.1| DNA polymerase III, beta subunit [Sulfurospirillum deleyianum DSM 6946] Length = 355 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 84/362 (23%), Positives = 168/362 (46%), Gaps = 25/362 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++++S + +L + +E+K+ ++ HV L + +KA+ EI +T Sbjct: 1 MKVSIKKSILETMLLNVQPYLEKKDLSQITSHVFLAIENEHFVLKATDYEIGLTYHTSEI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T + L DIV+ L+D I + + I S F L ++FP Sbjct: 61 KIASFGDGTANGKKLLDIVKSLKDDEIIL----ETINDYLYIKQNSSKFKLPMLNPNDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F + S+ L +++ A+ T ++ LNG I + + L VATD Sbjct: 117 LFPTIENKPKFNINSTTLVRSIKKIAPAIDTNNPKFELNGSLIDIKDNTINL--VATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ V + + + S I+P+KA+ EI ++ +++ E+ + + Sbjct: 175 RLAI--VTLQQETTENFSFIIPKKAISEIQKLFFD---DIEIFYDENTLIAQSNHFTFYT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 +LI+G+FP+Y +IP + + + + + +++ ++SI+S +K++ ++K+ Sbjct: 230 KLINGKFPDYARIIPKNKNYTILLTREFMIESIKQISIISP----EIKITFKAEKIIFES 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV----DDEVVFRLDS 352 + DN + ++ NE + + N +YLL+ + NI + D + F L+S Sbjct: 286 LNDDNIEAKTEVDFETGLQNEIYLAV--NSRYLLDFLSNIENSNFTLGFNDSGLPFTLES 343 Query: 353 SN 354 N Sbjct: 344 EN 345 >gi|306823995|ref|ZP_07457369.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium dentium ATCC 27679] gi|309801968|ref|ZP_07696082.1| DNA polymerase III, beta subunit [Bifidobacterium dentium JCVIHMP022] gi|304552993|gb|EFM40906.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium dentium ATCC 27679] gi|308221416|gb|EFO77714.1| DNA polymerase III, beta subunit [Bifidobacterium dentium JCVIHMP022] Length = 374 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 93/394 (23%), Positives = 174/394 (44%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + + R+I+ + P+ V L+A DG+L++ A I I A Sbjct: 1 MKVEINSQALADAVAWTTRVIDARPATPILAGVRLEAIDGILQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L ++ ++ + G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEAGTALVLGKLLADITKSLP--SEKTYLSTD--GSTMTITSGKSTFTMQLMPDNEYPD 116 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L S V + A++ EE R L GI + K+ +TD Sbjct: 117 LP----VVPAKLGQVDSPTFMQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIE 233 RL+ + + P I G +LR + S D + L ES L E Sbjct: 171 RFRLSRSSFTWTPE---NPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFE 227 Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +LIDGEFP + ++ +L A+ RVS+++ R ++++ + Sbjct: 228 NAGRISTSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVAE-RNAPIRMAFA 286 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++ D +A E +++ + + + FN YL+E + IS + V ++ Sbjct: 287 GQELTLSAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMT 341 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V G+ + + D ++ Y+L+PMR Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMRF 372 >gi|227502243|ref|ZP_03932292.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC 49725] gi|306834800|ref|ZP_07467864.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium accolens ATCC 49726] gi|227077067|gb|EEI15030.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC 49725] gi|304569328|gb|EFM44829.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium accolens ATCC 49726] Length = 393 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 92/401 (22%), Positives = 182/401 (45%), Gaps = 38/401 (9%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 9 VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTKVRIAGMVDEP 68 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELG---TEVNISHGDSNFYLQSFPESEFPST 121 G I V+ LL DIV L + KE E+ ++ ++ G S F L P ++P Sbjct: 69 GQIAVAGKLLSDIVATLPN-------KEVEISQVDSKALVTCGSSRFELPLIPLDDYPQL 121 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + + +++ A ++ L G+ I+ +D+++ ATD RL Sbjct: 122 PVLPEVTG-TIQPQLFAEAIQQVAAAAGKDDTLPMLTGVHMDIHGKDIEMT--ATDRFRL 178 Query: 182 AVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLN 231 A+ E + A+ + ++VP K + + R L + +++++ ++ L+ Sbjct: 179 AMRTLEWEPAAEDVEA-KLLVPAKTLQDTGRSLDPHLNIPIEIAVGSGDNIGADGLFGLH 237 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ + R++D +FPN Q ++P S+ V L++A+ RVS+++ Q +++ + Sbjct: 238 ADNRETTTRMLDADFPNVQPLLPKSHTNIASVEVAPLQEAIRRVSLLTDRNAQ-IRMEFA 296 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ ++ D G A E++ ++ I FN YL + + I++ D VVF Sbjct: 297 DGQVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLAVINT-----DRVVFGF 350 Query: 351 -DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + S ++ I ++ + ++D + N Y+LMP+R+ Sbjct: 351 TEPSRPAIMIPEPEELPEADEDGNFPTPQTNFTYLLMPVRL 391 >gi|310286522|ref|YP_003937780.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17] gi|311063461|ref|YP_003970186.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum PRL2010] gi|309250458|gb|ADO52206.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17] gi|310865780|gb|ADP35149.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum PRL2010] Length = 374 Score = 85.5 bits (210), Expect = 1e-14, Method: Compositional matrix adjust. Identities = 87/390 (22%), Positives = 177/390 (45%), Gaps = 25/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + P+ + L+A DG L++ A EI I A Sbjct: 1 MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L A+ ++ + G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEPGTALVLGKLLADITKSLP--AEKTYLSTD--GSTMTINSGKSTFTMQLMPDAEYPD 116 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L + V + A++ EE R L G+ + + K+ +TD Sbjct: 117 LP----VVPAKLGQVDAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTD 170 Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL+ A Q I + +V + ++ R L + V +++ L E+ Sbjct: 171 RFRLSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAG 230 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + + ++ L A+ RV++++ R +++ S + Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVAE-RNAPIRMVFSGQE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D +A E +++ + + + FN YL+E + I+ + V ++ ++ Sbjct: 290 VTLSAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAIT-----EPFVRMKMTTAV 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+ + + D ++ Y+L+PMR Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMR 371 >gi|298253030|ref|ZP_06976822.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis 5-1] gi|297532425|gb|EFH71311.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis 5-1] Length = 374 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + ++A +G L++ A +I I A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI + L+ DI + L A+ ++ K + I+ G S F LQ P E+P Sbjct: 61 VDEEGSILILGKLMADITKSLP--AEKTYLKSE--NNTLTITSGKSTFTLQLMPLGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ + V + + + EE R L GI I ED + +TD R Sbjct: 117 LPKLPHKLG-QVDAPTFIQAVNQASVSTSREENRPVLTGI--RIQFEDDSVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSM-- 237 L+ + + + S + R G +LR I S D V IH N E S+ Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTR---GSLLRDIAHSLDDHQNVI-----IHFNEEDKSLLG 225 Query: 238 --------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + ++IDGEFP+ + +N L A+ RVS+++ R +++ Sbjct: 226 FENSGRTSTSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVAE-RNAPIRMI 284 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S+ +L ++ D +A E +++ + + + FN YLLE + I + V + Sbjct: 285 FSNQELTLSAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMK 339 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ V G+ +++ D + Y+L+PMR Sbjct: 340 MATAVKPVEFNGQ---QESDGDESTDYRYLLVPMRF 372 >gi|319652160|ref|ZP_08006279.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] gi|317396149|gb|EFV76868.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] Length = 375 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 81/340 (23%), Positives = 161/340 (47%), Gaps = 19/340 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGS 66 +G I K P+ + L A + L + S +I I IPA+ + GS Sbjct: 14 VGEVSSAISAKTPFPILTGIKLTACENHLRLTGSNSDIVIEKVIPAADEGAELEIVKTGS 73 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 + V++ L ++++KL I +++ V I + Y+ FP ++P E + Sbjct: 74 VVVTSRYLTELIKKLPGDIHIKLNEKHN----VTIISDEIITYINGFPAEQYPKLPEFDN 129 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 + +++S L ++++T FA + + R L G+ + E CA ATD HRLA + Sbjct: 130 SHEIQISSVKLSAIIKQTVFAASKNDTRPVLTGVHMIVKENHFS-CA-ATDSHRLAFLQT 187 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSVRLIDGE 245 I + A S IVP ++ E+L++L+ ++ S V++ SES + +S+ + RLI+G+ Sbjct: 188 SIAS--ASKGSFIVPGSSLKELLKLLAHQEESEVQIFSSESYLVFKTKSIMLCSRLIEGK 245 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDM 304 +P+ +IP ++++ L + +DR + + + V L + L ++ + + Sbjct: 246 YPDVTGLIPNEAKTVIKLDAKKLLKGIDRACLFALEWKNNNVLLEIKEGALKISSVSSAI 305 Query: 305 GKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVV 342 GK E+ + E + I + +L++ + I + V+ Sbjct: 306 GKIEETQPLLEITGERELSISLDGNFLMDALKAIQEEHVL 345 >gi|254435683|ref|ZP_05049190.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus oceani AFC27] gi|207088794|gb|EDZ66066.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus oceani AFC27] Length = 171 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 14/167 (8%) Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 V++ +++ + LS S +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+ Sbjct: 19 VRLKFGTNQMRAEFQGLSFSTKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNIL 78 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 ++ + + V L LS KL V N + G A E +++ Y ++I FN YL+++++ I + Sbjct: 79 TNDKYRGVHLHLSDLKLQAIVTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDT 138 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 EV RL +N+S D+ ++K YV+MPMR+ Sbjct: 139 KEV-------RLTFTNASSSCLITPIDASDSK-------YVVMPMRL 171 >gi|269793360|ref|YP_003312815.1| DNA polymerase III subunit beta [Sanguibacter keddieii DSM 10542] gi|269095545|gb|ACZ19981.1| DNA polymerase III, beta subunit [Sanguibacter keddieii DSM 10542] Length = 376 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 90/390 (23%), Positives = 174/390 (44%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + PV V ++A+ +G L + + E+ IPA Sbjct: 1 MKFRVERDVLAEAVTWTARTLPTRPPAPVLAGVRIEASAEGTLGLSSFDYEVSARSEIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I VS LL +I R L + F E GT+V + G S F L + P ++P Sbjct: 61 EVSEPGVILVSGRLLAEISRALP-AKPVDFTVE---GTKVTVVCGASRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + S + L + V + A + ++ L G+ I E ++ +ATD + Sbjct: 117 ALPSMPEI-SGTVQGDELTHAVAQVTVAASRDDTLPLLTGVRVEIEGE--RITMLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 RLA+ E+ + ++ + R + + ++ + L V V+LS + Sbjct: 174 RLALREMTWKPASPDISTVALVRARTLSDVAKSLGGS-GEVNVALSTGTGVDLVGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P+ + + P V L A RV++++ R +++S S + Sbjct: 233 RHTTSLLVDGDYPHVRRLFPDETPIHAVVPTQPLIDAAKRVALVAE-RNTPIRMSFSEGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ + + FN ++LL+ + + +D V RL ++ Sbjct: 292 VVLDAGQGDDAQASEALEAVLVGEDISVAFNPQFLLDGLGALGTDFV-------RLSFTH 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + +DS + +D+ + Y+L+P+R Sbjct: 345 PNKPVEFTGQDSLDGEDSS-HYRYLLVPIR 373 >gi|161833638|ref|YP_001597834.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri GWSS] gi|152206127|gb|ABS30437.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri GWSS] Length = 366 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 159/342 (46%), Gaps = 9/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 MK +D+L+ L +I N +P+ L+ +L I S EI +T + Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + +L DI++ + + ++F KE + ++ I + + + + + E+P Sbjct: 61 NSINYGSAAIPYKILIDILKNIPEQP-LTFIKE--IDNKLKIIYQNGEYNISIYSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S ++ L N++ T FA+ ++IR +NG+ F IN + + T Sbjct: 118 KYSILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNT-TI 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 + DI++ I+ +K + + L + D V +S ++ + + Sbjct: 177 LVKYTRKDILSN--NKIKFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G +PNY ++I +K L +N ++ RV+ S + Q + L+LS ++ ++ Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + KA E + Y P+ I FN K+L++I+ NI+ D++ Sbjct: 294 WDYN-NKAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDI 334 >gi|225352381|ref|ZP_03743404.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156888|gb|EEG70257.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 386 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 95/391 (24%), Positives = 178/391 (45%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 13 MKVEVNSQALADAVAWTTRVIDARPASPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI V LL DI + L A ++ + G+ + I+ G S F +Q P++E+P Sbjct: 73 VDESGSILVLGKLLADITKSLP--AAKTYLSTD--GSTLTITSGKSTFTMQLMPDNEYPD 128 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L + V + A++ EE R L GI + + K+ +TD Sbjct: 129 LP----VVPAKLGQVDAQTFAQAVAQASVAVSREENRPVLTGI--RVQFQGNKVIMSSTD 182 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL+ + + + + + R A + ++ R L + V E+ L E+ Sbjct: 183 RFRLSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVVDFDPENPSLLGFENAG 242 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + +N +L A+ RVS+++ R ++++ +S + Sbjct: 243 RVSTSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVAE-RNAPIRMAFTSQE 301 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T + D +A E +++ + + + FN YL+E + IS + V ++ ++ Sbjct: 302 LTLTAGSVDEAQAKEILDIDMDGEDITVAFNPAYLIEGLSAIS-----EPFVRMKMTTAV 356 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V G+ ++N + ++ Y+L+PMR Sbjct: 357 KPVEFNGQ---QESNSEESMDYRYLLVPMRF 384 >gi|229085761|ref|ZP_04217989.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44] gi|228697560|gb|EEL50317.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44] Length = 376 Score = 85.1 bits (209), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 86/372 (23%), Positives = 168/372 (45%), Gaps = 39/372 (10%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DV-------CG 65 + + + KN P+ + L A L + S +I I IP + DV G Sbjct: 14 ISEVSKAVSLKNPFPILTGIKLIAEKNCLILVGSNSDIVIEKIIPLMINDVKVLEVYKTG 73 Query: 66 SITVSAHLLYDIVRKLQ-------DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 SI +SA L +IV+KL +G Q+ + +E+ +N F E+ Sbjct: 74 SIVISAKYLSEIVKKLPHDIHIKVNGKQLVTIQSDEIVINLN-----------GFNTEEY 122 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS + + ++ S L + +T FA++ E R L G+ E +L VAT+ Sbjct: 123 PSLPQIDEATYTKIPSIELIEAINQTVFAVSKSESRPVLTGVNMSFKEN--QLSCVATNS 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ E+ I + S VP ++ E+++++ ++ + + +++S I +++S+ Sbjct: 181 HRLALRELAIETNVNG--SFNVPGASLNELIKLIKNEIGEIHIYMTDSYIVFKSDTISLF 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS-SDKLC 296 RLI+G +PN ++P + + ++ L + +DR + ++ R V L + K+ Sbjct: 239 SRLIEGNYPNISGLLPKDSKTIITLDTIQLLKGIDRACLFANEWRNNKVNLEIKDGTKIR 298 Query: 297 MTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ ++G+ E+ N+ E + I + +L++ + I ++E+ D S Sbjct: 299 IFSNSSELGEIEETQNIKMISGEKELSISLDGSFLIDALKVIK-----EEEIRLSFDGSM 353 Query: 355 SSVFIRGKDKDS 366 V I D S Sbjct: 354 RPVLIEPVDNSS 365 >gi|296392442|ref|YP_003657326.1| DNA polymerase III subunit beta [Segniliparus rotundus DSM 44985] gi|296179589|gb|ADG96495.1| DNA polymerase III, beta subunit [Segniliparus rotundus DSM 44985] Length = 397 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 97/389 (24%), Positives = 174/389 (44%), Gaps = 37/389 (9%) Query: 18 CRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76 R + + +P+ +LL A++ G L + + ++ + A V G + VS LL D Sbjct: 23 TRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQVSGPGKVLVSGRLLAD 82 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I + L + E GT+V++ G + F L S P EFPS E + + S+ Sbjct: 83 IAKALPS-PSVRIATE---GTKVHVRSGSAKFTLPSMPVDEFPSLAE----HPTPIGSAQ 134 Query: 137 LKNL---VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-I 192 K L + + A + ++ L G+ +E ++L A TD RL+V ++ + + Sbjct: 135 AKELFAAISQVGVAASRDDTLPALTGLRLVFTQEGIELAA--TDRFRLSVRKLVWDGKGV 192 Query: 193 AKMP-SIIVPRKAVGEILRI-LSSKDSSVKVSL-----SESRIHLNIESLSMSVRLIDGE 245 + P + +VP + E R L + D+ V+ +L S S + + ++ RL+D + Sbjct: 193 GEEPLTALVPAAVLSEFARTQLETDDAPVEFALDQGAGSPSLLGVQAGPFRITTRLLDAQ 252 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL---SSDKLC-MTVDN 301 P+ +IP RV L +AV RVS++S+ R Q ++L SD L ++ Sbjct: 253 LPDVSQLIPKRYSSLARVELAPLVEAVRRVSLVSARRSQ-IRLDFQGSGSDALLKLSAGA 311 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV-FIR 360 + G A E + V + P+ + FN YLL+ + + F N +V + Sbjct: 312 EEAGFAEEELAVQHWGEPISVVFNPGYLLDGLSTFRG-----ECGQFGFTGPNRAVALVT 366 Query: 361 GKDKDSKNNKD----NKVNAFYVLMPMRI 385 G + + + + + YVLMP+R+ Sbjct: 367 GDGPEPEETAEGYTADAPDQVYVLMPVRL 395 >gi|218283255|ref|ZP_03489316.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989] gi|218216010|gb|EEC89548.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989] Length = 372 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/349 (22%), Positives = 166/349 (47%), Gaps = 15/349 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59 M +++R + L R I + +P + + D + + S I I T +P Sbjct: 1 MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISIRTVIVPG 60 Query: 60 SVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ GSI + + L +IVRKL D I E + V IS + F L Sbjct: 61 ELNNLDIEEEGSIIIDSKYLLEIVRKL-DCKNIEI--EVIDYSLVRISSDNGQFNLNGIR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P + + F L ++ LK++V +T FA + ++ R L G+ F+ ++ ++ C+ Sbjct: 118 SNEYPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNFN-SQGNMLYCS- 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RLA +++ + ++ +I +P K++ E++R +S D ++ + + + Sbjct: 176 GTDSYRLARKTIELDS--SQDFNITIPSKSLTEVVRSVSD-DDTIDIFADSKKAQFVFDK 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG FP+ Q +IP S ++ V+ + +DR + + + ++ +KL + + Sbjct: 233 TIIQTRLIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQE 292 Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + ++G + E + Y + + N Y+L+ I + ++V+ Sbjct: 293 THVKTYSSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVL 341 >gi|293977750|ref|YP_003543180.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri DMIN] gi|292667681|gb|ADE35316.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri DMIN] Length = 370 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 80/342 (23%), Positives = 159/342 (46%), Gaps = 9/342 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59 MK +D+L+ L +I N +P+ L+ +L I S EI +T + Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + +L DI++ + + ++F KE + ++ I + + + + + E+P Sbjct: 61 NSINYGSAAIPYKILIDILKNIPEQP-LTFIKE--IDNKLKIIYQNGEYNISIYSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S ++ L N++ T FA+ ++IR +NG+ F IN + + T Sbjct: 118 KYSILENTNSILISEKQLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNT-TI 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 + DI++ I+ +K + + L + D V +S ++ + + Sbjct: 177 LVKYTRKDILSN--NKIKFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G +PNY ++I +K L +N ++ RV+ S + Q + L+LS ++ ++ Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + KA E + Y P+ I FN K+L++I+ NI+ D++ Sbjct: 294 WDYN-NKAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDI 334 >gi|261338545|ref|ZP_05966429.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM 20093] gi|270276566|gb|EFA22420.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM 20093] Length = 374 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 97/391 (24%), Positives = 176/391 (45%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ V L+A DG L + A EI I A Sbjct: 1 MKVEVNSTSLADAAAWTTRVIDSRPNSPILAGVKLEAKDGALFLSAFNYEISARDRIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L ++ ++ G+ + I+ G S F +Q PESE+P Sbjct: 61 VDEPGAVVVLGKLLTDISKMLP--SEKTYLATE--GSTLRITSGKSTFTMQLMPESEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + A++ + R L + + E + L +TD +R Sbjct: 117 LPQLPPQIG-QVDAETFAQAVAQAVVAVSHDGTRQVLTAVRMQCDGERVTLS--STDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHL----NIE 233 L+ A + + + R G LR +S + +V +S S L N Sbjct: 174 LSRALFHWTPDDNDINATALIR---GTHLRDISRSLDEHQNVVISFDPSNPTLLGIQNAG 230 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S +V+LIDGEFP + V L A+ RVS+++ R + +++ + + Sbjct: 231 RIS-TVQLIDGEFPAVDRLYADEYPIHAVVERQQLISAIKRVSLVAG-RNEPIRMIFTGE 288 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ MT D +A E ++V + + + FN YL+E I I+ + V ++ ++ Sbjct: 289 EVTMTAGAADESQAREILDVDLDGEDITVAFNPNYLIEGISAIT-----EPYVRMKMTTA 343 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+ +++ D +N Y+L+PMR Sbjct: 344 VKPVEFDGQ---QEHDSDESMNYRYLLVPMR 371 >gi|266620979|ref|ZP_06113914.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479] gi|288867360|gb|EFC99658.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479] Length = 373 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 51/400 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T ++ IL + + + K T+ + + + A+ +++ A+ E+ I + + Sbjct: 1 MKLTFQQDAILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I + A LL +IVRKL E++ IS S F++Q EF Sbjct: 61 IHERGKIALDAKLLSEIVRKLSSAGDSVVTIESDEKFTTTISCEKSVFHIQGRDGEEFAY 120 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + + Y+ L+ LK ++ +T F++A + + G F ++ LK+ V+ D Sbjct: 121 LPYIERDNYIC---LSQFTLKEVIRQTIFSIAPNDSNKMMTGELFQVSGSQLKV--VSLD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 GHR+++ V++ + +IVP K + E+ +IL + V + S + I + Sbjct: 176 GHRISIRNVELKDTYHDI-KVIVPGKTLSEVSKILGGDNEKEVLIFFSSNHILFEFDDTI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLI+GE+ ++ + ++ VN L +++R +I+ +R +DK Sbjct: 235 VVSRLIEGEYFRIDQMLSSDYETKITVNKRELLDSIERATIL--IR--------ENDKKP 284 Query: 297 MTVDNPD------MGKAIESMN--VYYNECPMDIC--FNYKYL---LEIIDNISSDEVVD 343 + ++ D M + SMN V ++ DI FN K+L L IID D Sbjct: 285 LIINVVDQELQLKMNSSFGSMNAEVAAHKTGSDIMIGFNPKFLIDALRIID--------D 336 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +EV + + S FIR D + Y+++P+ Sbjct: 337 EEVTLYMLNPKSPCFIR----------DEEGKYIYLILPV 366 >gi|157414324|ref|YP_001481580.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|157385288|gb|ABV51603.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 81116] Length = 355 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 78/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329 >gi|317509428|ref|ZP_07967046.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316252257|gb|EFV11709.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 397 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 93/386 (24%), Positives = 168/386 (43%), Gaps = 31/386 (8%) Query: 18 CRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76 R + + +P+ +LL A++ G L + + ++ + A V G + VS LL D Sbjct: 23 TRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQVSGPGRVLVSGRLLAD 82 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I + L + E G++V++ G + F L + P EFPS E A + Sbjct: 83 IAKALPS-PSVKIVAE---GSKVHVRSGSAKFTLPTMPVDEFPSLAEHPAPIGVAAAKEL 138 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-IAKM 195 + + A + ++ L G+ ++L+L A TD RL+V ++ + A Sbjct: 139 FAA-ISQVGVAASRDDTLPALTGLRLVFTGQELELAA--TDRFRLSVRKLAWEGKDFADE 195 Query: 196 P-SIIVPRKAVGEILRI-LSSKDSSVKVSL-----SESRIHLNIESLSMSVRLIDGEFPN 248 P + +VP + E R L S D+ V+ +L S S + + ++ RL+D + P+ Sbjct: 196 PVTALVPAAVLSEFARTPLPSDDTPVEFALDLGSGSPSLLGVQAGPFRITTRLLDAQLPD 255 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK----LCMTVDNPDM 304 +IP RV+ L +AV RVS++S+ R Q ++L S L ++ + Sbjct: 256 VSQLIPKRYTAVARVDLAPLVEAVRRVSLVSARRSQ-IRLDFESSGEDSVLRLSAGGEEA 314 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 G A E + V + + + FN YLL+ + + ++ F N +V + D Sbjct: 315 GFAEEELPVRHWGESISVVFNPGYLLDGLSTFRA-----EQAQFGFTGQNRAVALVSGDG 369 Query: 365 D-----SKNNKDNKVNAFYVLMPMRI 385 ++ + YVLMP+R+ Sbjct: 370 AEPEAIAEGYTAGSSDQVYVLMPVRL 395 >gi|203284346|ref|YP_002222086.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly] gi|201083789|gb|ACH93380.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly] Length = 386 Score = 84.7 bits (208), Expect = 2e-14, Method: Compositional matrix adjust. Identities = 71/308 (23%), Positives = 150/308 (48%), Gaps = 16/308 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 + A II +N + +LL+ L IKA+ I IP ++ ++A Sbjct: 17 IDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIVSTDNFNVLINASN 76 Query: 74 LYDIVRKLQDGAQISF-FKENE-----LGTEVNISHGDSNFYLQ--SFPESEFPS----T 121 L D V+ L ++ FKE+E +G N + +N +L +F E + Sbjct: 77 LADAVKALNLYDELKMKFKEDENKLDIIGESDNNNENYTNDHLSEPTFSTEEIENYNYDI 136 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 +E Y ++FEL LK ++ + F+ + +E + LNGI+F + + L V+T+ +R+ Sbjct: 137 NDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYFTKDSNSV-LTLVSTNSYRM 195 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 ++ + D++ + + + IVP K +L+ + + + +K +S+ + ++ + ++ L Sbjct: 196 SIYKTDLIFE--EDVNFIVPVKMFN-LLKQMITGEGVIKFKVSDKKFYVEFNNYKIACSL 252 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 I G +P+Y+++IP ++ + + + RV+ + R + V L+ S ++L + ++ Sbjct: 253 ISGNYPDYESIIPNEYTNRALIDVSMFKDRLSRVNSYTDKRSKKVILNFSVNQLKLMAED 312 Query: 302 PDMGKAIE 309 P G+ E Sbjct: 313 PITGRKGE 320 >gi|312195933|ref|YP_004015994.1| DNA polymerase III subunit beta [Frankia sp. EuI1c] gi|311227269|gb|ADP80124.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c] Length = 392 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 102/412 (24%), Positives = 166/412 (40%), Gaps = 55/412 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 M++TV R++ E G R + + + ++ + G L + A ++ +T + A Sbjct: 1 MRVTVPRAEFAEAAGWVARHLPARMAPGIVAIAGMRVDAGERLTLSAFDYQVAVTATVEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY-LQSFPE-SE 117 S V G V L+ DI+R L D E L +H L+ +P Sbjct: 61 SAAVPGGALVPGRLVADIMRSLPDETVRLSVDEGWLLVRAAGAHYRVPILPLEDYPALPT 120 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E F A V + A A +E L + + L L VATD Sbjct: 121 FPPPVGEVDTLGFAAA-------VNQVVPAAARDETFPVLTALRLELAGRGLTL--VATD 171 Query: 178 GHRLAVAEVDIVAQIAKMPSII--VPRKAVGEILRILSSKDSSVKVSLSE-----SRIHL 230 +RLAV + + + P + VP + + E+ RI ++ S + + L R L Sbjct: 172 RYRLAVRTIPWQPSV-RDPEAVAHVPARLLAELARIPTAA-SRLALGLGADDDGGPRFGL 229 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + + VRL+DG FP+Y+ + P S + L A+ RV++++ V+L+ Sbjct: 230 STGARRIVVRLVDGTFPHYRRLFPESVGLCVGAQIAPLAAAIRRVAVVAPRTGPVVRLTF 289 Query: 291 SSDKLCMTVDNPDMG-------------KAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 S+ L V PD G A +S+ + Y+ + +N YLL+ + + Sbjct: 290 SAGVLTADV-GPDAGTTTAGDSGPLSLAAATDSVPIDYDGPDLVAWYNPTYLLDGLGAVD 348 Query: 338 SDEVV------DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 DEV D + RL + I GKD D YVLMP+ Sbjct: 349 GDEVTIGFAASDPDEAARLPA-----IITGKDDDGFR---------YVLMPV 386 >gi|170780464|ref|YP_001708796.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp. sepedonicus] gi|169155032|emb|CAQ00128.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp. sepedonicus] Length = 396 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 164/348 (47%), Gaps = 15/348 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R E + A +++ ++ T+P+ VL++A + L + + E+ I A Sbjct: 14 VKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQAD 73 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + VS LL DI +L + A + F E+ +++ +S G ++F L S P E+P Sbjct: 74 IEEPGRVLVSGRLLADIANRLPN-APVRFTTED---SKITVSCGSAHFTLLSMPVEEYP- 128 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T + S L + V + A + +++ + G+ + E L L +ATD +R Sbjct: 129 TLPQISEQSGLLPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYR 186 Query: 181 LAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDS-SVKVSLSESR--IHLNIE 233 +AV E+D + + +VP + + EI + + SV ++ ++ R I + + Sbjct: 187 VAVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHSGTISVAITDTDDRQLIAFSAD 246 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +++ LI G FP + + P + D +N +L +A RV ++ R A++ + + D Sbjct: 247 KKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVLE-REAALRFTFTID 305 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 L + + +A ES++ + ++LL+ + + S+ V Sbjct: 306 GLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFV 353 >gi|154503048|ref|ZP_02040108.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149] gi|153796289|gb|EDN78709.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149] Length = 369 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 81/354 (22%), Positives = 169/354 (47%), Gaps = 31/354 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +S++++ + + + K T+P+ +L+ A+ ++++ A+ E+ I I Sbjct: 1 MRIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVIKLTANDMELGIETRIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPE-SEF 118 + G I ++A + +IVRKL D I +N+ T + N QS + S Sbjct: 61 ILERGIIALNAKIFSEIVRKLPDSDVVIETTSDNQ--TLITCEKAKFNIAAQSGEDFSYL 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P ++E+Y+ E LK ++ +T F++A + + G F I LK+ V+ DG Sbjct: 119 PVIEKEDYITVSEFT---LKEVIRQTIFSIADNDTNKMMTGELFEIEGNILKV--VSLDG 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237 HR+++ ++++ A+ +IVP K + EI +I+ + ++ V +S +++ I + + Sbjct: 174 HRISIRKIELKENYAQ-KKVIVPGKTLQEISKIIGGEAEALVDISFTKNHIVFEFDKTVV 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+GE+ ++ + ++R++ L +DR +++ DK + Sbjct: 233 VSRLIEGEYFKIDQMLSSDYETKVRIHKKELLDCIDRATLLIK----------EGDKKPI 282 Query: 298 TVDNPD----------MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +D D +G E++ + + I FN K+L++ + I +EV Sbjct: 283 IIDIKDGTMELKIKSQIGSMDETIFITKEGKDLLIGFNPKFLIDALRVIDDEEV 336 >gi|315123618|ref|YP_004065622.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017340|gb|ADT65433.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 378 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 166/344 (48%), Gaps = 21/344 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 +++DN + +E E + I KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTI--KIKYLLDFLTSIEEEK 327 >gi|224283953|ref|ZP_03647275.1| DNA polymerase III subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|313141105|ref|ZP_07803298.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] gi|313133615|gb|EFR51232.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] Length = 374 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 87/390 (22%), Positives = 177/390 (45%), Gaps = 25/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + P+ + L+A DG L++ A EI I A Sbjct: 1 MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L A+ ++ + G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEPGTALVLGKLLADITKSLP--AEKTYLSTD--GSTMTINSGKSTFTMQLMPDAEYPD 116 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L + V + A++ EE R L G+ + + K+ +TD Sbjct: 117 LP----VVPAKLGQVDAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTD 170 Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL+ A Q I + +V + ++ R L + V +++ L E+ Sbjct: 171 RFRLSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAG 230 Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDGEFP + + ++ L A+ RV++++ R +++ S + Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVAE-RNAPIRMVFSGQE 289 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D +A E +++ + + + FN YL+E + I+ + V ++ ++ Sbjct: 290 VTLSAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAIT-----EPFVRMKMITAV 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+ + + D ++ Y+L+PMR Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMR 371 >gi|148926821|ref|ZP_01810500.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|145844546|gb|EDK21653.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni CG8486] Length = 355 Score = 84.3 bits (207), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELNFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329 >gi|226321069|ref|ZP_03796611.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805] gi|226233479|gb|EEH32218.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805] Length = 385 Score = 84.0 bits (206), Expect = 3e-14, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIASETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347 >gi|283956180|ref|ZP_06373665.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792334|gb|EFC31118.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 355 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329 >gi|163737540|ref|ZP_02144957.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107] gi|161389066|gb|EDQ13418.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107] Length = 378 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 90/391 (23%), Positives = 163/391 (41%), Gaps = 36/391 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + V+ S++ L ++ E + IP+ L Q G L I A+ + E + Sbjct: 16 LKVDISELRAALAWVNKVRETWSRIPILSQNLFQVEGGQLAITATCLDREARQTLSCDTS 75 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 S ++ H + + L I +L T ++G S P ++P+T Sbjct: 76 DAWSFVMNGHRVMKVTAGLSGTVTIEHDIAKDLLTLT--ANGMSLAMNVMAPPEDWPTTN 133 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 ++E + E+ + L + ++TEE RYYLNGI++ ++ ++ V T+GHRL Sbjct: 134 KQEPLGGIEVGENTLLRALNLVKSCISTEETRYYLNGIYWTSHDGASRM--VTTNGHRL- 190 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR- 240 A +D+ A +I PR + + +L++ + + K++ + + S+ M R Sbjct: 191 -ARLDLEAPNPPF-DVIFPRIGITPLAAMLTANGNQLAKITYRGADKTPTLLSIEMGDRE 248 Query: 241 ----LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 LIDG +P+Y VIP S D E + + A R+ +M+ K +S +K Sbjct: 249 LHCKLIDGTYPDYNRVIP-SVDGEQAFDIIIPKSATQRLRLMAGPHDLGCK--ISPEKGT 305 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 MT+ D + + DI FN YL + ++ + Sbjct: 306 MTIGREDHDGKMSVTYAAKGKSGPDIGFNTLYLAQTT------------------ATMGN 347 Query: 357 VFIRGKDKDSK--NNKDNKVNAFYVLMPMRI 385 + +R KD + + + VLMPMR+ Sbjct: 348 IRLRAKDNGAPALATSEAHTDLIMVLMPMRV 378 >gi|57236916|ref|YP_178031.1| DNA polymerase III subunit beta [Campylobacter jejuni RM1221] gi|86152375|ref|ZP_01070585.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86153999|ref|ZP_01072201.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|205355743|ref|ZP_03222513.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|57165720|gb|AAW34499.1| DNA polymerase III, beta subunit [Campylobacter jejuni RM1221] gi|85840672|gb|EAQ57924.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842537|gb|EAQ59750.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|205346520|gb|EDZ33153.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|307746966|gb|ADN90236.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni M1] gi|315057443|gb|ADT71772.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni S3] gi|315931304|gb|EFV10273.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 327] Length = 355 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329 >gi|255324007|ref|ZP_05365132.1| DNA polymerase III, beta subunit [Corynebacterium tuberculostearicum SK141] gi|311741698|ref|ZP_07715520.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|255298864|gb|EET78156.1| DNA polymerase III, beta subunit [Corynebacterium tuberculostearicum SK141] gi|311303219|gb|EFQ79300.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 393 Score = 84.0 bits (206), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 94/404 (23%), Positives = 184/404 (45%), Gaps = 44/404 (10%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 9 VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVDEP 68 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELG---TEVNISHGDSNFYLQSFPESEFPST 121 G I V+ LL DIV L + KE E+ ++ ++ G S F L P ++P Sbjct: 69 GQIAVAGKLLSDIVASLPN-------KEVEISQVDSKALVTCGSSRFELPLIPLDDYP-- 119 Query: 122 KEEEYVYSFELASSVLKNL-VERTH---FAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + E+ ++ L VE H A ++ L G+ I +D+++ ATD Sbjct: 120 ---QLPVLPEVTGTIQPQLFVEAIHQVAAAAGKDDTLPMLTGVHMDIRGKDIEMT--ATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRI 228 RLA+ ++ + + + ++VP K + E R L + V++++ ++ Sbjct: 175 RFRLAMRTLEWEPKSPDVEAKLLVPAKTLQETGRSLDPHLNIPVEIAVGTDDNIGADGLF 234 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 L+ ++ + R++D +FPN Q ++P ++ + L++A+ RVS+++ Q +++ Sbjct: 235 GLHADNRETTTRMLDADFPNVQPLLPKNHTNIASIEVAPLQEAIRRVSLLTDRNAQ-IRM 293 Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + ++ ++ D G A E++ ++ I FN YL + + I++ D VV Sbjct: 294 EFADGQVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLGVINT-----DRVV 347 Query: 348 FRL-DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 F + S ++ I ++ + ++D + N Y+LMP+R+ Sbjct: 348 FGFTEPSRPAIMIPEPEELPEADEDGNFPTPETNFTYLLMPVRL 391 >gi|171741733|ref|ZP_02917540.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC 27678] gi|283454961|ref|YP_003359525.1| DNA polymerase III, subunit beta [Bifidobacterium dentium Bd1] gi|171277347|gb|EDT45008.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC 27678] gi|283101595|gb|ADB08701.1| DNA polymerase III, beta subunit [Bifidobacterium dentium Bd1] Length = 374 Score = 83.6 bits (205), Expect = 4e-14, Method: Compositional matrix adjust. Identities = 92/394 (23%), Positives = 173/394 (43%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 1 MKVEINSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L ++ ++ + G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEAGTALVLGKLLADITKSLP--SEKTYLSTD--GSTMTITSGKSTFTMQLMPDNEYPD 116 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V +L S V + A++ EE R L GI + K+ +TD Sbjct: 117 LP----VVPAKLGQVDSPTFMQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIE 233 RL+ + + P I G +LR + S D + L ES L E Sbjct: 171 RFRLSRSSFTWTPE---NPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFE 227 Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +LIDGEFP + ++ +L A+ RVS+++ R ++++ + Sbjct: 228 NAGRVSTSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVAE-RNAPIRMAFA 286 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++ D +A E +++ + + + FN YL+E + IS + V ++ Sbjct: 287 GQELTLSAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMT 341 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V G+ + + D ++ Y+L+PMR Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMRF 372 >gi|229818504|ref|YP_002880030.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333] gi|229564417|gb|ACQ78268.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333] Length = 378 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 93/393 (23%), Positives = 174/393 (44%), Gaps = 27/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK V+R + + + R + + +IPV V ++A+ G L + + E+ I A Sbjct: 1 MKFRVDRDVLADAVTWTARTLPTRPSIPVLAGVRIEADPQGALRLSSFDYEVSALSEIAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118 V G++ VS LL +I R L G + EL GT V ++ G S F L + P ++ Sbjct: 61 DVPDAGTVLVSGRLLAEISRALP-GKPVDV----ELDGTRVVLTCGSSRFTLLTMPLDDY 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS S + + L V + A + +E L G+ I E KL +ATD Sbjct: 116 PSLPAMPPA-SGTVDAGTLAEAVAQVTIAASRDETLPLLTGVRVEI--EGDKLTLLATDR 172 Query: 179 HRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----SESRIHLNIE 233 +RLA+ E+ A + +V + + E+ + L+S +V +SL + + Sbjct: 173 YRLAMRELSWNPASPGLEATALVRARTLSEVAKSLTSA-GAVSISLPNGDGKDLVGFEAG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + L++G++P + + P + + L +A RVS+++ R ++L+ S Sbjct: 232 GRRTTSLLVEGDYPPVRRLFPEATTSHAVASTNELVEAARRVSLVAE-RNTPIRLTFSEG 290 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + D +A E++ P+ FN YLL+ + + ++ RL + Sbjct: 291 QVVLEAGQGDDAQASEAIESTLTGEPITTAFNPGYLLDGLGVVGTE-------FTRLSFT 343 Query: 354 NSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + G+ K ++ D V Y++ P+R Sbjct: 344 HGTKPAVLTGQPKLEDDDADRDVFR-YLIQPIR 375 >gi|297243221|ref|ZP_06927156.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis AMD] gi|296888755|gb|EFH27492.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis AMD] Length = 374 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + ++A +G L++ A +I I A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDARPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI + L+ DI + L A+ ++ K + I+ G S F LQ P E+P Sbjct: 61 VDEEGSILILGKLMADITKSLP--AEKTYLKSE--NNTLTITSGKSTFTLQLMPLGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + V + + + EE R L GI I ED + +TD R Sbjct: 117 LPKLPNKLG-QVDAPTFIQAVNQASVSTSREENRPVLTGI--RIQFEDDTVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSM-- 237 L+ + + + S + R G +LR I S D V IH N E S+ Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTR---GSLLRDIAHSLDDHQNVI-----IHFNEEDKSLLG 225 Query: 238 --------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + ++IDGEFP+ + +N L A+ RVS+++ R +++ Sbjct: 226 FENSGRTSTSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVAE-RNAPIRMI 284 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S+ +L ++ D +A E +++ + + + FN YLLE + I + V + Sbjct: 285 FSNQELTLSAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMK 339 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ V G+ +++ D + Y+L+PMR Sbjct: 340 MATAVKPVEFNGQ---QESDGDESTDYRYLLVPMRF 372 >gi|312147910|gb|ADQ30569.1| DNA polymerase III, beta subunit [Borrelia burgdorferi JD1] Length = 385 Score = 83.6 bits (205), Expect = 5e-14, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347 >gi|218249720|ref|YP_002374949.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7] gi|218164908|gb|ACK74969.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7] Length = 385 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDKKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347 >gi|260437690|ref|ZP_05791506.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876] gi|292809916|gb|EFF69121.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876] Length = 365 Score = 83.2 bits (204), Expect = 6e-14, Method: Compositional matrix adjust. Identities = 92/405 (22%), Positives = 181/405 (44%), Gaps = 64/405 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++L+ + R + + T+ + +L+ A + +++ A+ E+ I I Sbjct: 1 MKIVCTKSELLKGVNITLRAVPVRTTMTILECILIDATELDIKLTANDMELGIETTIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---E 117 + G I + A DI+RKL D +E+ I DSNF E Sbjct: 61 IIEKGKIAIEAKFFADIIRKLPD-------------SEITI-ETDSNFNASITCEKSVFN 106 Query: 118 FPSTKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 P+ E++ Y ++ LK L+ +T F++ E + G F + E++L Sbjct: 107 IPARDGEDFSYLPYIEKNNMITISQFDLKELIRQTIFSIGDNESNLIMTGELFEVTEDNL 166 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRI 228 K+ V+ D +R+++ V + I +IVP K + EI +I++ +S V V S++ I Sbjct: 167 KV--VSLDRYRVSIRNVKL-NNIYNDIKVIVPGKTLNEISKIITGDAESMVDVYFSDNHI 223 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS----------IM 278 + + RLI+GEF ++ + ++ +N L +DR + ++ Sbjct: 224 LFEFDKTIVISRLIEGEFFKINQMLSKDYETKITINKRELLDCIDRATLFVKEGNKKPVI 283 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + +VK++++S +GK E +++ + I FN K++++ + Sbjct: 284 FDIEDGSVKINITS----------TVGKMNEEIDIEKEGSDIKIGFNPKFVIDAL----- 328 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V+DDE + S F+ K + +KDN+ Y+++P+ Sbjct: 329 -RVIDDETI-------SMTFMNAKSPCTIRDKDNR--YIYLILPV 363 >gi|221218172|ref|ZP_03589638.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a] gi|224532522|ref|ZP_03673147.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23] gi|224533532|ref|ZP_03674121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a] gi|225549474|ref|ZP_03770440.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a] gi|221192120|gb|EEE18341.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a] gi|224512594|gb|EEF82970.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23] gi|224513205|gb|EEF83567.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a] gi|225369751|gb|EEG99198.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a] Length = 385 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLAFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347 >gi|226321747|ref|ZP_03797273.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26] gi|461953|sp|P33761|DPO3B_BORBU RecName: Full=DNA polymerase III subunit beta gi|454040|gb|AAA58942.1| beta subunit of DNA polymerase III [Borrelia burgdorferi] gi|226232936|gb|EEH31689.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26] Length = 385 Score = 83.2 bits (204), Expect = 7e-14, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347 >gi|134122656|dbj|BAF49632.1| putative DnaN [Microcystis aeruginosa] Length = 209 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 47/173 (27%), Positives = 100/173 (57%), Gaps = 6/173 (3%) Query: 175 ATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHL 230 ATDGHRLAV + + V + ++ +P +A+ E+ R++++K + ++ + + +S++ Sbjct: 5 ATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQVIF 64 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + ++ R ++G +P Y +IP S ++ L ++ L + ++ V+++S + VK SL Sbjct: 65 EMGEQRLTSRKLEGAYPTYNQLIPKSFERSLVLDRKQLIRCLELVAVLSDQKNNLVKFSL 124 Query: 291 SSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +L + V++PD+G A ESM DI FN KYL++ + + ++++ Sbjct: 125 DGENSRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 177 >gi|154174460|ref|YP_001407306.1| DNA polymerase III subunit beta [Campylobacter curvus 525.92] gi|112803507|gb|EAU00851.1| DNA polymerase III, beta subunit [Campylobacter curvus 525.92] Length = 355 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/345 (20%), Positives = 166/345 (48%), Gaps = 23/345 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++ + ++ + +E+++ ++ H+ + A +G+L I+A+ EI + + ++ Sbjct: 1 MKVLINKNVLESIVTNTNPYLEKRDLSAITSHIYIAAKNGVLNIRATDHEIGLAYKL-SN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + G T + L DI++ L+D I + + I +S + L + +F Sbjct: 60 VKITDEGYATANGKKLLDIIKSLKDDEVIL----ETVNNYLYIKQKNSKYKLPMYKFEDF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E F++ + +L +++ ++ + ++ LNG I + + + V TD Sbjct: 116 PEFPSSEGKSKFDVDAVMLGRSLKKILPSIDSNNPKFELNGALLDIRQNFINI--VGTDT 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL++ + + + + SII+P+KA+ EI ++ + +++ E+ + + Sbjct: 174 KRLSIFKFETPTE--REFSIIIPKKAINEIQKLFFDR---IEIYYDENILIAQSANFEFF 228 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G++P+Y+ V+P K L++N + + +S++S +K++ + D + Sbjct: 229 TKLINGKYPDYERVVPKEIKKRLKLNRDKMIDGIRTISMLS----DQMKITFTKDSITFE 284 Query: 299 V---DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 DN + IE +E + I +YLL+ + +I D+ Sbjct: 285 SIIEDNSEAKTTIEYQTGLEDEIFIGI--KNRYLLDFLTSIEDDD 327 >gi|239624132|ref|ZP_04667163.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520518|gb|EEQ60384.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 372 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 87/392 (22%), Positives = 185/392 (47%), Gaps = 36/392 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ I+ + + + K T+ + +L+ A+ G +++ + E+ I + Sbjct: 1 MKLIFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTGEIKLTGNDMELGIETKVEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF- 118 + G I + A L +I R+L + A ++ +++ T IS +S F +Q EF Sbjct: 61 ILEHGKIALDAKLFSEITRRLSSENASVTIESDDKFNT--TISCENSVFNIQGRDGEEFA 118 Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P ++++Y+ L+ LK ++++T F+++ + + G F +NE LK+ V+ Sbjct: 119 YLPYIEKDKYIC---LSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--VSL 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235 DGHR+++ +V + +IVP K + EI +IL + V + S + I ++ Sbjct: 174 DGHRISIRKVRLKDHYDD-TKVIVPGKTLSEISKILGGDNEKEVLIYFSANHILFEFDNT 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSLSS 292 + RLI+GE+ ++ + ++ VN ++R +I+ +R K +++ Sbjct: 233 VVVSRLIEGEYFRINQMLSSDYETKVSVNKKEFLNCIERATIL--IRENDKKPLIINIGD 290 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351 + + M + N G + ++ + I FN K+L++ + V+DDE + + Sbjct: 291 NSMEMKL-NSSFGSMNADLMIHKTGKDIMIGFNPKFLIDAL------RVIDDEEINIYMM 343 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S FI KD++ N Y+++P+ Sbjct: 344 NPKSPCFI----------KDDEENYIYLILPV 365 >gi|203287880|ref|YP_002222895.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1] gi|201085100|gb|ACH94674.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1] Length = 386 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 71/309 (22%), Positives = 147/309 (47%), Gaps = 18/309 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 + A II +N + +LL+ L IKA+ I IP ++ ++A Sbjct: 17 IDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIVSTDNFNVLINASN 76 Query: 74 LYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN---FYLQSFPESEFPSTKEEEYVY- 128 L D V+ L ++ FKE+E ++ I D+N + E F + + E Y Y Sbjct: 77 LADAVKALNLYDELKMKFKEDENKLDI-IGESDNNNENYINDHLSEPTFSTEEIENYNYD 135 Query: 129 --------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +FEL LK ++ + F+ + +E + LNGI+F + + L V+T+ +R Sbjct: 136 INDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYFTKDSNSV-LTLVSTNSYR 194 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +++ + D++ + + + IVP K +L+ + + + +K +S+ + ++ + ++ Sbjct: 195 MSIYKTDLIFE--EDVNFIVPVKMFN-LLKQMITGEGIIKFKVSDKKFYVEFNNYKIACS 251 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI G +P+Y+++IP ++ + + RV+ + R + V L+ S ++L + + Sbjct: 252 LISGNYPDYESIIPNEYTNRALIDVFMFKDRLSRVNSYTDKRSKKVILNFSVNQLKLMAE 311 Query: 301 NPDMGKAIE 309 +P G+ E Sbjct: 312 DPITGRKGE 320 >gi|15594783|ref|NP_212572.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31] gi|195942017|ref|ZP_03087399.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi 80a] gi|216264913|ref|ZP_03436905.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a] gi|223888830|ref|ZP_03623421.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b] gi|2688357|gb|AAB91514.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31] gi|215981386|gb|EEC22193.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a] gi|223885646|gb|EEF56745.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b] Length = 385 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347 >gi|319955762|ref|YP_004167025.1| DNA polymerase iii, beta subunit [Nitratifractor salsuginis DSM 16511] gi|319418166|gb|ADV45276.1| DNA polymerase III, beta subunit [Nitratifractor salsuginis DSM 16511] Length = 355 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 88/344 (25%), Positives = 164/344 (47%), Gaps = 23/344 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI ++ I +L + +E+K+ ++ HV + ++ + EI + Sbjct: 1 MKIRAQKQVIESILINLQPFLEKKDASQITSHVYFETGPDRCIVRGTDNEIGLQIVTREF 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD GS T + L DI+R L+D I +N L I S F L F FP Sbjct: 61 EVDHPGSFTANGKKLLDIIRILRDDEIILELLDNALM----IKQQHSKFKLPIFDAEAFP 116 Query: 120 STKEEEYVYSFELAS-SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S E + L S ++++NL + T A+ T +Y LNG +I + L V TD Sbjct: 117 SFPEIDGKPKISLDSMNLIRNLKKITP-AIDTNNPKYELNGALINIKNDKTDL--VGTDT 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAVA + ++ + ++I+P+KA+ EI ++ + +++ E+ + + + Sbjct: 174 RRLAVATIPNNSE--EELALILPKKAILEIQKLFLDQ---IEIHYDETTLIITNDDYFFF 228 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL--- 295 RLI+G+FP+Y+ +IP S ++ + + +A+ V+ +++ +K++ SD + Sbjct: 229 TRLINGKFPDYERIIPRSLKYQIELPKKEMLEAIRLVTTIAN----DIKITFLSDAILFN 284 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 ++ DN + IE +N + +I N +YLL+ + + D Sbjct: 285 ALSDDNVEAKTEIE-LNTGIPDR-FEISLNSRYLLDFLAQVDHD 326 >gi|257413824|ref|ZP_04744342.2| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82] gi|257202157|gb|EEV00442.1| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82] Length = 388 Score = 82.8 bits (203), Expect = 8e-14, Method: Compositional matrix adjust. Identities = 73/344 (21%), Positives = 168/344 (48%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++L + + + + T+ + +L+ A+ +++ A+ E+ I I Sbjct: 19 MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 78 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A + +IVRKL D + ++ + T + N +S + S P Sbjct: 79 IAERGVIALDAKIFSEIVRKLPD-SDVTIETDASFKTTITCEKAKFNIVGKSGDDFSYIP 137 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + ++ LK ++ +T F++A + + G F I E DLK+ V+ DGH Sbjct: 138 YIERNEPIV---MSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGH 192 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ +++ + ++VP K + E+ +IL S + V + L+++ I E+ ++ Sbjct: 193 RISIRNIELKNNYSH-KKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVV 251 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ + ++ + ++++N L +DR +++ + + ++++ + + Sbjct: 252 SRLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMEL 311 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + N +G E +++ + I FN K+ ++ + I +EV Sbjct: 312 KI-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVIDEEEV 354 >gi|161621802|ref|YP_054725.2| DNA polymerase III subunit beta [Propionibacterium acnes KPA171202] gi|289424627|ref|ZP_06426410.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187] gi|289155324|gb|EFD04006.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187] Length = 386 Score = 82.8 bits (203), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 97/405 (23%), Positives = 179/405 (44%), Gaps = 41/405 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 1 MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 VD G VS LL DI R L + K ++ T+ +++ G + F LQ+ P E Sbjct: 61 VDEPGESLVSGKLLADIARSLPN-------KPVQITTDPAKMDLVCGSARFTLQALPVDE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P + + + +SV V + A +E+ G+ IN E L L +ATD Sbjct: 114 YPDLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATD 170 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R+A+ E+ + +VP K + E R ++S + V ++LS E + Sbjct: 171 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 229 Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + M+ RL+ GEFP ++++ + +R L +V RVS+++ R ++ Sbjct: 230 GDGANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 288 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341 + ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 289 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 345 Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 346 --PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 384 >gi|224532178|ref|ZP_03672810.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116] gi|224511643|gb|EEF82049.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116] Length = 386 Score = 82.4 bits (202), Expect = 9e-14, Method: Compositional matrix adjust. Identities = 81/346 (23%), Positives = 159/346 (45%), Gaps = 25/346 (7%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I + A II +N + +L++ L IK++ I IP + Sbjct: 10 ETNQITSEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTIPIISETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEV--NISHGDSNFYLQSFPESEFPSTK 122 + ++A YD V+ +I F E+ E+ + YL E F + Sbjct: 70 KVLINASNFYDAVKAFSLYKKIKIVFNEDNSKLEIMGELKDEKEEEYLDHLKEPTFSYEE 129 Query: 123 ---------EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+Y + E+ LK ++ R F+ +E + LNG++F +ED KL Sbjct: 130 IENYNYDMINEDYTFEIEVKQKSLKKVISRIAFSAHFDESKNVLNGVYF-TKDEDSKLLL 188 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V+T+GHR+++ + +++ I + + IVP K + L+ L S + VK+ S+ + ++ + Sbjct: 189 VSTNGHRMSICKTEVI--IEEAVNFIVPVK-IFNFLKHLMSGEGVVKIKSSDKKFYVEFD 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ LI G +P+Y+++IP + V+ + L+ + RV++ ++ KL L+ Sbjct: 246 NYKIACSLIIGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVD---KSRKLVLTFS 302 Query: 294 KLCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 +L + + D+ G+ I++ N Y+ + N Y +E I Sbjct: 303 ELQLKLLGEDLITGRKGEFFIKNPNYVYDGSDEIMAINISYFVEAI 348 >gi|154483924|ref|ZP_02026372.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC 27560] gi|149735415|gb|EDM51301.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC 27560] Length = 366 Score = 82.4 bits (202), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 14/346 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++SD++ + + + K T+ + +L+ A +G ++ A+ E+ I + Sbjct: 1 MKLVCKKSDLITGINIVMKAVSSKTTMSILECILIDATEGEIKFTANDMELGIETKVEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A + +IVRKL D + + T+ NI+ +S F + +F Sbjct: 61 IIEAGSIAIDAKIFSEIVRKLPDNDVVIEVNDE---TKANITCENSKFNILVKSADDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L+ LK L+ +T F + + L G F + LK+ VA D R Sbjct: 118 LPEIEKKDKITLSQFALKELIRQTIFTVNDADKNKILTGELFEVMGNRLKV--VALDKFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A+ +++ ++VP K++ EI +IL+ D V + + + I + + Sbjct: 176 IAIRNMELKEDYGNF-KVLVPGKSLNEISKILNGGVDDEVNIYFTSNHILFEFDETKVVS 234 Query: 240 RLIDGEFPNYQNVIP-CSND--KELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKL 295 RLI E NY + SND ++ +N + +DR +++ + V L++ ++ Sbjct: 235 RLI--ECSNYFDTDKMISNDYKTKITINKKEMANCIDRATLLIKEGDKKPVFLTIKDTEM 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +++ N +G ES+ + M I FN K+L++I+ + S+EV Sbjct: 293 ELSI-NTFIGSMDESIPIVREGSDMMISFNPKFLIDILRVLDSEEV 337 >gi|312193899|ref|YP_004013960.1| DNA polymerase III subunit beta [Frankia sp. EuI1c] gi|311225235|gb|ADP78090.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c] Length = 387 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 91/403 (22%), Positives = 168/403 (41%), Gaps = 36/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---------EI 51 MK VER + E + R + ++ + VL+ GLL + A+GP E+ Sbjct: 1 MKFRVERDEFTEAVAWTARSLPSRSATATNQQVLM----GLL-LDATGPGLVVAAFDYEV 55 Query: 52 EITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + A+V G +L DI ++L +N+L I+ G++ F LQ Sbjct: 56 AAQATLEATVHEEGRALAPGRMLADITKQLPAAPVEVETDDNKL----VITCGNARFTLQ 111 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 + P E+ T + + V + A ++ L G+ I + L L Sbjct: 112 TLPVDEY-PTLPPLPPITGHIEGGAFGAAVAQVAVAAGKDDTLPVLTGVRLEIEGDTLTL 170 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----E 225 A TD +RLAV + + ++P + + + R L + V ++L E Sbjct: 171 AA--TDRYRLAVRTLKWSPSSPDAAGVALIPARTLLDTARSLGGGTAQVAIALGTGPSGE 228 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + RL+DG+FP Y+ ++P S + L +AV RV++++ + Sbjct: 229 ALAGFAGNHRQTTTRLVDGQFPPYRKLLPDSCPLTAQAEKGPLLEAVKRVALVAP-KTAP 287 Query: 286 VKLSLSSDKLCMTVD-NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V+L+ S+D L + + +A E++ Y+ +++ FN YL + + + S D Sbjct: 288 VRLAFSADHLRLEAGSHGGEAQASETLPATYDGPDLEVAFNPAYLQDALTAVES-----D 342 Query: 345 EVVFRLDSSNSSVFIRGKDK--DSKNNKDNKVNAFYVLMPMRI 385 +V F S+ + K K D + Y+LMP+++ Sbjct: 343 QVEFGFASAEDAEVAAKKPAILTGKGAGDELPDYRYLLMPIQL 385 >gi|91203533|emb|CAJ71186.1| similar to DNA polymerase III beta subunit [Candidatus Kuenenia stuttgartiensis] Length = 366 Score = 82.0 bits (201), Expect = 1e-13, Method: Compositional matrix adjust. Identities = 78/324 (24%), Positives = 149/324 (45%), Gaps = 12/324 (3%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFK 91 V L+ D E+ A+ E+ + IPA + + G I + A +I R+ +IS Sbjct: 33 VKLEVADNCAELTATDLEVLVKYRIPAKACEGEGGIVLPASRANNIFREWAGNEEISVTV 92 Query: 92 ENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATE 151 E + +F + +FP+ + + E+ +L +VE+ +A+++ Sbjct: 93 E---AGHCTLQSKGGSFKILGDDCLQFPNITKTDVTSFVEIDGEILGKMVEKVAYAVSSI 149 Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211 + +GI I + + + V +D +RLAV + + S IV K + + R Sbjct: 150 KALSIYSGISVKIFGDTIIM--VGSDMNRLAVVKRKVRNPENVSMSGIVGVKCLAFLQRF 207 Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 +S ++ V + ES+IH E + +LI+G++PNY VIP +NDK++ VN L Sbjct: 208 VSECKGTLMVGMGESQIHFIGEKGEVISQLIEGKYPNYDEVIPKNNDKKIEVNRDELLSI 267 Query: 272 VDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 V S +++ + V+ SL+ +KL + ++G+A + Y+ FN Y+L+ Sbjct: 268 VRMASFVTNDEYRVVEFSLTKNKLSIFSSAANVGEAALEIAAQYDGPDYTNTFNPDYILD 327 Query: 332 IIDNISSDEV------VDDEVVFR 349 + + + +DD +F+ Sbjct: 328 FLRASDCETITIELGEIDDAALFK 351 >gi|256830859|ref|YP_003159587.1| DNA polymerase III subunit beta [Desulfomicrobium baculatum DSM 4028] gi|256580035|gb|ACU91171.1| DNA polymerase III, beta subunit [Desulfomicrobium baculatum DSM 4028] Length = 384 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 90/376 (23%), Positives = 170/376 (45%), Gaps = 29/376 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + ++++ L A II K V L+A + I A+ IE G PA Sbjct: 1 MFLKVRKEEVIDGLLKASNIIPSKTGAAYLRTVWLKAEGDTISILATDSSIEFVGVYPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G + V +++R+L G +I+ K + ++I G + L + S F Sbjct: 61 ISDGGLVGVQGKKFCELMRRLPPG-EITL-KLDPSAKHLHIEQGRRKYKLPANESSWFQD 118 Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI-FFHINEEDLKLCAVA 175 P + ++S +L K +++R F +A +E +N I F + +D+++C + Sbjct: 119 FNPFPAQNAVLWSGDL----FKEIIDRIAFCIADDEDLTSMNCIKFAPVENDDVEICGL- 173 Query: 176 TDGHRLAV---AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +GH+ + + DI A + + +V +K + EI + L++ + +++SLS+ R+ L Sbjct: 174 -NGHQFGLLRFSNPDIRAVLGQ-DGFLVSKKYLLEIRKWLTNDE--IEISLSDKRLFLRT 229 Query: 233 ESL--SMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 E+ S S+ L F +Y+N I D+ L V+ L A+DR+ + ++ +A Sbjct: 230 ENRKESFSLPLKAYVFADYRNFINQYKDRFASNLVVDRHELTDALDRIFVFNTEANKATF 289 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++L + D+G+ E ++ Y I K +LEI+ + V D + Sbjct: 290 FDFGPEELSLYCQGQDIGEGTELISCQYQGELSKIALPTKVILEILGHF-----VSDSLT 344 Query: 348 FRLDSSNSSVFIRGKD 363 F + I GKD Sbjct: 345 FSFVGPSEPCRITGKD 360 >gi|121612492|ref|YP_999721.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|167004698|ref|ZP_02270456.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|87249053|gb|EAQ72015.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 355 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/346 (21%), Positives = 167/346 (48%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L + ++ + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----VRQKNTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + ++L + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMRLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ K+LL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329 >gi|196048109|ref|ZP_03115287.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|196021365|gb|EDX60094.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] Length = 377 Score = 82.0 bits (201), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 82/356 (23%), Positives = 169/356 (47%), Gaps = 22/356 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ ++ ++ +++ L + + N IP+ + ++A + + + S E I I + Sbjct: 1 MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60 Query: 60 ---SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV+ G+I + + DIVRKL +G FK + G +++S +S F L + P Sbjct: 61 DNLSVEKEGAIVI-PKTISDIVRKLPNGEIC--FKLQKKGL-LDVSTKNSKFSLNTLPSE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P+ ++ ++++ + + L VE T++ AT++ R L GI I + K+ AT Sbjct: 117 EYPNFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGIEIKITNK--KIAFSAT 174 Query: 177 DGHRLA----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +GH L+ E D + + + IVP K + + ++ + + ++ + E+ + L Sbjct: 175 NGHLLSQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFN--NDTLTLGFEENAVTLFS 232 Query: 233 ESLSMSVRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKL 288 + + +LI+G FP+++ + P S + L + +++V I+ S A + Sbjct: 233 STQYIKTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASI 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI--CFNYKYLLEIIDNISSDEVV 342 + +L ++ +N G+ + N DI FN YLL + ++S +EV Sbjct: 293 MYENSELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSGEEVT 348 >gi|291536989|emb|CBL10101.1| DNA polymerase III, beta subunit [Roseburia intestinalis M50/1] Length = 370 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 73/344 (21%), Positives = 168/344 (48%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++L + + + + T+ + +L+ A+ +++ A+ E+ I I Sbjct: 1 MKLICSKSNLLYGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A + +IVRKL D + ++ + T + N +S + S P Sbjct: 61 IAERGVIALDAKIFSEIVRKLPD-SDVTIETDASFKTTITCEKAKFNIVGKSGDDFSYIP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + ++ LK ++ +T F++A + + G F I E DLK+ V+ DGH Sbjct: 120 YIERNEPIV---MSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ +++ + ++VP K + E+ +IL S + V + L+++ I E+ ++ Sbjct: 175 RISIRNIELKNNYSH-KKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ + ++ + ++++N L +DR +++ + + ++++ + + Sbjct: 234 SRLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMEL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + N +G E +++ + I FN K+ ++ + I +EV Sbjct: 294 KI-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVIDEEEV 336 >gi|282853040|ref|ZP_06262377.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139] gi|282582493|gb|EFB87873.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139] Length = 386 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 97/405 (23%), Positives = 178/405 (43%), Gaps = 41/405 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 1 MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 VD G VS LL DI R L + K ++ T+ +++ G + F LQ+ P E Sbjct: 61 VDEPGESLVSGKLLADIARSLPN-------KPVQITTDPAKMDLVCGSARFTLQALPVDE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P + + +SV V + A +E+ G+ IN E L L +ATD Sbjct: 114 YPDLPHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATD 170 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R+A+ E+ + +VP K + E R ++S + V ++LS E + Sbjct: 171 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 229 Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + M+ RL+ GEFP ++++ + +R L +V RVS+++ R ++ Sbjct: 230 GDGANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 288 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341 + ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 289 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 345 Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 346 --PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 384 >gi|284925305|gb|ADC27657.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni IA3902] Length = 355 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 76/346 (21%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + ++L + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMRLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ K+LL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329 >gi|331004665|ref|ZP_08328127.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330409592|gb|EGG89032.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 369 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 87/394 (22%), Positives = 187/394 (47%), Gaps = 40/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ ++ LG + + K + + +L+ A D + + A+ E+ I + Sbjct: 1 MNLKFQKAQLVNALGIVMKAVSTKTSSVILESILITAKDNRVFLDATDTELSIQTEVDGI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEF- 118 + G + ++A L DIVRK ++ + I + E + + + F + EF Sbjct: 61 IVNPGGVVLNAKLFSDIVRKFENTDSLIELDVDKEFKSTIRCEQ--AVFNIMGIDPVEFI 118 Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P +++++ +L+ LK ++ +T F+ A +I + G + + K V Sbjct: 119 PMPQIDKDDFI---KLSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNIAKF--VTL 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--- 233 DGHR+++ +++ +VP K++ E++RI+ S D+ VS+ S+ H+ E Sbjct: 174 DGHRMSIRNIELNGDFENQ-RCVVPIKSLQEVMRIIDS-DTQKDVSIYFSKDHILFEFDK 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSL 290 +L +S R++DGE+ + ++ D ++ V+ L+ A+++ I+ +R K + + Sbjct: 232 TLVLS-RILDGEYFRIETMLSNDYDTKVTVSRNRLQSAIEQAMIL--IRENEHKPLIMEI 288 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FR 349 S L ++V N +G +N+ + + I FN K+L++ + +V+DD+ V Sbjct: 289 ESSLLTLSV-NSSLGFMDAKVNIEKSGNDLKIAFNPKFLVDAL------KVIDDDFVNIY 341 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ S FIR D+K Y+++P+ Sbjct: 342 FTNAKSPCFIR----------DDKNTYTYLILPV 365 >gi|261839664|gb|ACX99429.1| DNA polymerase III subunit beta [Helicobacter pylori 52] Length = 374 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 85/352 (24%), Positives = 161/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++D L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKDQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ V+ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|217034368|ref|ZP_03439783.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10] gi|216943163|gb|EEC22633.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10] gi|315586816|gb|ADU41197.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori 35A] Length = 374 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 161/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ G L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKGKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|300780157|ref|ZP_07090013.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium genitalium ATCC 33030] gi|300534267|gb|EFK55326.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium genitalium ATCC 33030] Length = 418 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 86/397 (21%), Positives = 175/397 (44%), Gaps = 28/397 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + + R + KNT PV V++ A+D LE E+ I A VD Sbjct: 32 VHKDDLSDAVAWVARNLPTKNTQPVLRAVVITADDNGLEFAGFDYEVSTRVRIAAEVDQP 91 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G + V+ L+ DIV + +N+ + + G + F L P ++P Sbjct: 92 GRVAVAGKLMADIVSNMPAKPIDVSVADNQ---RLLLQGGSARFELPLMPLDDYPQLPVL 148 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 V L ++ + + + A ++ L G+ ++ ++L ATD RLA+ Sbjct: 149 PEVTG-TLDTTTFVDAITQVASAAGRDDTLPMLTGVHMEVSGNRVQLA--ATDRFRLALR 205 Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIESL 235 ++ + + + +++P K + + R L + + V++++ + L+ + Sbjct: 206 SLEWEPKAPDVEAKLLIPAKTLLDNARTLDTHLEEPVEIAVGSGDNVGGDGLFGLHSGNR 265 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + R++D EFPN Q ++P ++ V L +A+ RVS+++ Q +++ ++ Sbjct: 266 ETTTRMLDAEFPNIQPLLPKTHTSMASVEIAPLMEAIRRVSLVADRNAQ-LRMHFQPGEV 324 Query: 296 CMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353 + + G+A ES+ + + I FN YL + ++ I + D VVF ++S Sbjct: 325 TLFASGAESGEASESLQCAFTGADELLIAFNSGYLRDGLNVIHT-----DRVVFGFTEAS 379 Query: 354 NSSVFIRGKDKDSKNNKDNK-----VNAFYVLMPMRI 385 ++ + D+ + D N Y+LMP+R+ Sbjct: 380 RPAIMVPEPDELPEAAADGSFETPATNFTYLLMPVRL 416 >gi|328905787|gb|EGG25563.1| DNA polymerase III subunit beta [Propionibacterium sp. P08] Length = 386 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 96/405 (23%), Positives = 178/405 (43%), Gaps = 41/405 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ER + E + A R + + T+P+ + ++A D + + AS E + A Sbjct: 1 MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 VD G VS LL DI R L + K + T+ +++ G + F LQ+ P E Sbjct: 61 VDEPGEALVSGKLLADIARSLPN-------KPVRITTDPAKMDLVCGSARFTLQALPVDE 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P + + + +S+ V + A +E+ G+ IN E L L +ATD Sbjct: 114 YPDLPQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATD 170 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R+A+ E+ + +VP K + E R ++S + V ++LS E + Sbjct: 171 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 229 Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + M+ RL+ GEFP ++++ + +R L +V RVS+++ R ++ Sbjct: 230 GDGANGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 288 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341 + ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 289 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 345 Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 346 --PYVHFSFTAPGKPCLVTGLNDLDGKPETDYR----HVIMLMRL 384 >gi|291457887|ref|ZP_06597277.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419431|gb|EFE93150.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 373 Score = 81.6 bits (200), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 68/280 (24%), Positives = 133/280 (47%), Gaps = 6/280 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ ++ + A + + K+T+P+ +LL A++G + + + E I Sbjct: 1 MKLQFQKDALISSINIAIKAVPSKSTMPIMECLLLDASNGKICLVGNDTEFGIETVCRGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + + A L +I++KL ++S E++ I S F + +EF Sbjct: 61 ILEAGKVALDARLFSEIIKKLPQDNELSVLIESDEHFVTTIRCEKSVFKISGKDGNEFTM 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L+ LK+ + +T F++A E + G F + + +C++ DGHR Sbjct: 121 IPGIDRSNSVSLSQFTLKSFINQTIFSVALNESNKKMTGEFLEVKGDLFSVCSL--DGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLSMS 238 +++ + +M + IVP KA+ EI RILS KD V + +++ I + + Sbjct: 179 ISIRRTQLKESCPEMKA-IVPGKALIEISRILSGGLKD-EVMIYFTKNHILFEFDDTLVL 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 RLIDGE+ + ++ D ++ VN L +++R +I Sbjct: 237 SRLIDGEYFHVAQMLSEDYDTKITVNRRELLDSIERSTIF 276 >gi|315452737|ref|YP_004073007.1| DNA polymerase III subunit beta [Helicobacter felis ATCC 49179] gi|315131789|emb|CBY82417.1| DNA polymerase III, beta subunit [Helicobacter felis ATCC 49179] Length = 356 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 66/309 (21%), Positives = 143/309 (46%), Gaps = 18/309 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++++ L +K+ + ++ HV ++A L +A+ E+ + + Sbjct: 1 MKFIIAKTELEAALKDLIAFTNKKDMVNITSHVCIEAKTDALIFQANDLEMGLCLTLNIP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS ++A L DI+ KL+ G + ++N + ++ S F L + FPS Sbjct: 61 AQETGSAVLNAKYLLDIISKLEKGDLLLESQDNFM----HVHFKRSKFKLPLLDKEYFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++ S L + ++ + T +Y +G+ + +E+L+L VATD R Sbjct: 117 FPTYDHLPVVYFDDSTLSDYFKKLAQVITTNASKYEFSGVLLAL-QENLEL--VATDTKR 173 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L+V +++I A +I+P++A+ E+ ++ ++ ++ I S+ + Sbjct: 174 LSVVQMEIGGTTSADRQELILPKRAMLEVAKLFR---GDFEMRYDKNMIFFKNASMVLFA 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 +LI G++P+YQN+IP + +L N + + A++ + + K+ DK+ Sbjct: 231 KLISGKYPHYQNIIPSTFAHQLECNTQDFKDAINITQALGAT----TKIIFRPDKIEFET 286 Query: 297 MTVDNPDMG 305 + +NP Sbjct: 287 LQTENPSFA 295 >gi|296118605|ref|ZP_06837183.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968504|gb|EFG81751.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 398 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 179/398 (44%), Gaps = 31/398 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ +G R + K PV ++ A+D LEI E+ I A ++ Sbjct: 13 VAKDDLSHAVGWVARNLPTKAAQPVLRAMIFTADDNGLEIAGFDYEVSTRVRIAAEIEEP 72 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G + V+ L+ DIV + + + +E+ T+V I G S F L + ++P Sbjct: 73 GRVAVAGKLMSDIVSAMPN-RPVEIRQED---TKVLIQCGSSRFELPTISLEDYPQLPVL 128 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 V ++ + V + A ++ L GI I +D+ L ATD RLAV Sbjct: 129 PEVTG-KINPQLFSEAVSQVAAAAGKDDTLPMLTGISMSIEGKDVHLT--ATDRFRLAVR 185 Query: 185 --EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIES 234 E + A+ K ++VP K + E R L S + +++++ ++ L+ ++ Sbjct: 186 TFEWEPTAEDVKT-QLLVPAKTLQETARTLDSHINDPIEIAVGTGDSIAADGLFGLHADN 244 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + R++D +FP +++P ++ V L++A+ RVS+++ Q +++ S + Sbjct: 245 RETTTRMLDADFPTVSHLLPKTHTAMASVEIGPLQEAIRRVSLLTDRNAQ-IRMLFSEGE 303 Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DS 352 + + D G A E++ + + I FN +L + + I + D VVF + Sbjct: 304 VQLAAGATDTGNAEETIPCAFTGRDELLIAFNPAFLKDGLAVIPT-----DRVVFGFTEP 358 Query: 353 SNSSVFIRGKDKDSKNNKDNKV---NAF--YVLMPMRI 385 S ++ I ++ + ++D + F Y+LMP+R+ Sbjct: 359 SRPAIMIPEPEELPEADEDGNFPTPDTFFTYLLMPVRL 396 >gi|88597670|ref|ZP_01100903.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218561695|ref|YP_002343474.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88189974|gb|EAQ93950.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359401|emb|CAL34183.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930329|gb|EFV09417.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 305] Length = 355 Score = 81.3 bits (199), Expect = 2e-13, Method: Compositional matrix adjust. Identities = 75/346 (21%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L + + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----VRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + ++L + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMRLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ K+LL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329 >gi|312149228|gb|ADQ29299.1| DNA polymerase III, beta subunit [Borrelia burgdorferi N40] Length = 385 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 79/345 (22%), Positives = 161/345 (46%), Gaps = 24/345 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 10 ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69 Query: 66 SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118 + ++A YD V+ +I F EN E+ E+N + +L+ +F E Sbjct: 70 KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129 Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + E+Y + E+ K ++ R F+ +E + LNG++F +ED L V Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSTLLLV 188 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ LI+G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ + Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302 Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 L + + D+ G+ I+ N Y+ + N Y +E I Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347 >gi|310816477|ref|YP_003964441.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25] gi|308755212|gb|ADO43141.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25] Length = 377 Score = 81.3 bits (199), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 101/371 (27%), Positives = 155/371 (41%), Gaps = 60/371 (16%) Query: 33 VLLQAND--GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF 90 V L+A D LL IK E E TG +P VSA +L ++ Sbjct: 46 VTLRATDLDNLLTIKL---EAETTGTVP--------FLVSAEVLQKFASLAAGPVTVTRT 94 Query: 91 KENELGTEVNISHGDSNFYL---QSFPESEFPSTKEEEY--VYSFELASSVLKNLVERTH 145 + E G + I+ D L + +FP+ + F + + L +++ + Sbjct: 95 PDIE-GKDALITITDQETTLRLRERIQHDDFPTVPAWDMKDAARFTGSGAELSRILDLSR 153 Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 ++TEE RYYLNGI+ E L AVATDGHR+AV + +I A + +I PR A+ Sbjct: 154 HCVSTEETRYYLNGIYLITAPERSTLRAVATDGHRMAVIDSNIEA--PNLAGVIFPRFAL 211 Query: 206 GEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 +L K ++ +K+ E+R + + + ++IDG FP+Y VIP + N Sbjct: 212 DVFRGLLDPKSNTPIKMQFEENRGIIEGDDWILHSKMIDGTFPDYTRVIP-----KHETN 266 Query: 265 C-TNLRQAV----DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 C + +A+ R+S I A S K+ + + D ES++V P Sbjct: 267 CEAHFTRAIVTKAHRLSQAVRGHIAAAATITSDGKMHLMHEGED-----ESVSVPVGASP 321 Query: 320 -MDI---CFNYKYLLEIIDNISSDEVVDDEVVFRLDS--SNSSVFIRGKDKDSKNNKDNK 373 D+ FN KYL + V E R + N I D D Sbjct: 322 NFDLGRHGFNVKYL-------NKQAQVTPEFTLRASTERPNDPATIVSDDPD-------- 366 Query: 374 VNAFYVLMPMR 384 A ++LMPMR Sbjct: 367 --ACWILMPMR 375 >gi|152963974|ref|YP_001359758.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] gi|151358491|gb|ABS01494.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] Length = 383 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 84/343 (24%), Positives = 159/343 (46%), Gaps = 14/343 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 +++ VER + + + A R + + +PV VLL+A D G L++ E+ +PA Sbjct: 9 VELQVERDVLADAVAWAARALPSRPPVPVLAGVLLEATDEGTLKLSTFDYEVSARVELPA 68 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + VS LL DI R L + ++ E G++V ++ G S F L + E+P Sbjct: 69 DVRTAGRVLVSGRLLADISRSLPN-RPVTLTTE---GSKVVVTCGASRFTLLTMTVEEYP 124 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S EL + V + A + +E L G+ I + L L +ATD + Sbjct: 125 ALPTLPD-SSGELPGAEFTEAVAQVTVAASRDETLPILTGVRMEIEGDRLTL--LATDRY 181 Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR---IHLNIESL 235 RLAV E+ + ++ + R + + ++ R L S S + +++++ + I Sbjct: 182 RLAVRELRWNPSSPDISAVALVRARTLSDVARSLGSS-SMLTMAMADGKSDLIGFQAGGR 240 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + L+DGE+P + + P + V+ L +AV RV++++ R V+L L Sbjct: 241 YSTSLLVDGEYPKVRALFPAESPTHAVVSTAALTEAVKRVALVAE-RNTPVRLRFEDGVL 299 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + + +A E++ + I FN ++LL+ + +++ Sbjct: 300 SLEAGQGEDAQATEALEAALVGESIAIAFNPQFLLDGLGALAA 342 >gi|118588967|ref|ZP_01546374.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] gi|118438296|gb|EAV44930.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] Length = 398 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 18/236 (7%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYDIVR 79 I+R++T+P+ VL++ DG + A+ ++EI + +V C GS + + LYD+VR Sbjct: 21 IQRRSTLPILSAVLIE--DG--AVIATDLDMEIR--VKFAVKKCEGSAVIPFNQLYDLVR 74 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L + V ++ ++L S+ ++P E V +L Sbjct: 75 LLPADRSVRLQDTEYKNGGVFVTFQGGRYFLPSYSVVDYPRFSMPEDVREIASPQGLLVA 134 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L E M+TEE RYYLNG+ F +++D + VATDGHRL D P I Sbjct: 135 L-EACQSFMSTEETRYYLNGVCFGRDKDDTGVL-VATDGHRLIAH--DYAHDCDGSP--I 188 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGEFPNYQNVIP 254 +PR + +LR+ + KV L E ++ + + +LIDG FP++Q V+P Sbjct: 189 LPRAMIVALLRLCEPE----KVLLHEQKMEFVLPGGGYLRCKLIDGTFPDWQRVVP 240 >gi|289427477|ref|ZP_06429190.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165] gi|289159407|gb|EFD07598.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165] gi|313765025|gb|EFS36389.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA1] gi|313771065|gb|EFS37031.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL074PA1] gi|313792567|gb|EFS40653.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA1] gi|313803568|gb|EFS44750.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA2] gi|313806857|gb|EFS45355.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA2] gi|313811770|gb|EFS49484.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA1] gi|313814220|gb|EFS51934.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA1] gi|313815418|gb|EFS53132.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA1] gi|313817644|gb|EFS55358.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA2] gi|313821531|gb|EFS59245.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA1] gi|313824525|gb|EFS62239.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA2] gi|313826194|gb|EFS63908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA1] gi|313829190|gb|EFS66904.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA2] gi|313832304|gb|EFS70018.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL007PA1] gi|313832764|gb|EFS70478.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL056PA1] gi|313839623|gb|EFS77337.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL086PA1] gi|314916214|gb|EFS80045.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA4] gi|314917481|gb|EFS81312.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA1] gi|314921817|gb|EFS85648.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA3] gi|314926332|gb|EFS90163.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA3] gi|314930918|gb|EFS94749.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL067PA1] gi|314955286|gb|EFS99691.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA1] gi|314959159|gb|EFT03261.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA1] gi|314961664|gb|EFT05765.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA2] gi|314963872|gb|EFT07972.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA1] gi|314969082|gb|EFT13180.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA1] gi|314975199|gb|EFT19294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA1] gi|314977612|gb|EFT21707.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL045PA1] gi|314980256|gb|EFT24350.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA2] gi|314985202|gb|EFT29294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA1] gi|314987111|gb|EFT31203.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA2] gi|314990687|gb|EFT34778.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA3] gi|315078994|gb|EFT51006.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA2] gi|315081496|gb|EFT53472.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL078PA1] gi|315083081|gb|EFT55057.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA2] gi|315086614|gb|EFT58590.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA3] gi|315088016|gb|EFT59992.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA1] gi|315097161|gb|EFT69137.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL038PA1] gi|315099341|gb|EFT71317.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA2] gi|315102318|gb|EFT74294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA1] gi|315107497|gb|EFT79473.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA1] gi|315109865|gb|EFT81841.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA2] gi|327332501|gb|EGE74236.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA2] gi|327333674|gb|EGE75391.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA3] gi|327444468|gb|EGE91122.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA2] gi|327446722|gb|EGE93376.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA2] gi|327448836|gb|EGE95490.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA1] gi|327454253|gb|EGF00908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA3] gi|327456313|gb|EGF02968.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA2] gi|327457413|gb|EGF04068.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL092PA1] gi|328756011|gb|EGF69627.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA1] gi|328757975|gb|EGF71591.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL020PA1] gi|328758854|gb|EGF72470.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA2] gi|328759812|gb|EGF73403.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL099PA1] Length = 414 Score = 80.9 bits (198), Expect = 3e-13, Method: Compositional matrix adjust. Identities = 96/403 (23%), Positives = 178/403 (44%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 29 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 88 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G VS LL DI R L + QI+ ++++ G + F LQ+ P E+P Sbjct: 89 VDEPGESLVSGKLLADIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 143 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +SV V + A +E+ G+ IN E L L +ATD + Sbjct: 144 DLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 200 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 R+A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 201 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 259 Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ Sbjct: 260 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 318 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEVVD 343 ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 319 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 373 Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 374 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 412 >gi|219685163|ref|ZP_03539983.1| DNA polymerase III, beta subunit [Borrelia garinii Far04] gi|219673259|gb|EED30278.1| DNA polymerase III, beta subunit [Borrelia garinii Far04] Length = 386 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 114/216 (52%), Gaps = 13/216 (6%) Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E+Y + EL K ++ R F+ +E + LNG+FF ED KL V+T+GHR+++ Sbjct: 140 EDYTFEIELKQKSFKKIINRIAFSAHFDESKNVLNGVFF-TKGEDFKLLLVSTNGHRMSI 198 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ ++ LI+ Sbjct: 199 CKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYVEFDNYKIACSLIN 255 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G +P+Y+++IP + + V+ + L+ + RV++ ++ KL L+ +L + + D Sbjct: 256 GNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYVD---KSKKLILTFSELQLKLLGED 312 Query: 304 M--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 + G+ I++ N Y + N Y +E I Sbjct: 313 LITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAI 348 >gi|225377586|ref|ZP_03754807.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM 16841] gi|225210562|gb|EEG92916.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM 16841] Length = 382 Score = 80.9 bits (198), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 74/344 (21%), Positives = 165/344 (47%), Gaps = 11/344 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++L + + + + T+ + +L+ A+ +++ A+ E+ I I Sbjct: 13 MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A + +IVRKL D + + ++ T + N +S + S P Sbjct: 73 IAERGIIALDAKIFSEIVRKLPD-SDVVIETDSNFKTTITCEKAKFNIVGKSGDDFSYIP 131 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + ++ LK ++ +T F++A + + G F I E LK+ V+ DGH Sbjct: 132 FIERNECI---SISQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENQLKV--VSLDGH 186 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ +++ ++VP K + E+ +IL S + V + LSE+ I + ++ Sbjct: 187 RISIRNIELKNN-YDHKKVVVPGKTLQEVSKILPGSAEEEVNIFLSENHIVFEFDDTTVV 245 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ + ++ D ++++N L +DR +++ + + ++++ + + Sbjct: 246 SRLIEGEYFKIEQMLSSDYDTKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMEL 305 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + N +G E +++ + I FN K+ ++ + I +EV Sbjct: 306 KI-NSFIGSMNEDIDITKEGKDILIGFNPKFFIDALRVIDEEEV 348 >gi|118475405|ref|YP_891212.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|118414631|gb|ABK83051.1| DNA polymerase III, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 356 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 70/308 (22%), Positives = 151/308 (49%), Gaps = 15/308 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+ ++++ + ++ + +++K+ ++ H+ L A DG+L IKA+ EI + + A Sbjct: 1 MKVLIKKNVLESIVINTNPYLDKKDLSSITSHIFLSARDGVLNIKATDNEIGLEYKVKNA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T + L DI++ L+DG + +N L I +S + L +FP Sbjct: 61 TIADEGMATANGKKLLDIIKSLKDGDIMLETIQNHLY----IKQNNSKYRLPMQKPEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F++ + L +++ ++ + L G I ++ + L V TD Sbjct: 117 EFPSLENKKKFDINAGSLSKSLKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+V +++I +Q SII+P+KA+ EI ++ ++++ E+ ++ Sbjct: 175 RLSVYQLEINSQNDPF-SIIIPKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFT 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G +P+Y V+P + + +N + + + +S++S + VK++++ D + Sbjct: 231 KLINGRYPDYTRVVPNEIKQNIILNREKIIEGIKTISMLSEI----VKITIAPDNISFES 286 Query: 300 DNPDMGKA 307 N D +A Sbjct: 287 INDDNSEA 294 >gi|291520348|emb|CBK75569.1| DNA polymerase III, beta subunit [Butyrivibrio fibrisolvens 16/4] Length = 301 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 62/280 (22%), Positives = 144/280 (51%), Gaps = 9/280 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++D+++ + + + + T+ + +L+ A+ G +++ A+ EI I + + Sbjct: 1 MKITCQKADLVKGVNIVSKAVPTRTTMAILECILIDASAGEIKLTANDMEIGIETIVNGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A +IVRKL D +++ ++ T + + +S + S P Sbjct: 61 ILERGIIALDAKKFSEIVRKLPDN-EVTIETDSTYKTSITCEKAKFDIIGKSGEDFSYLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + +L L++++ +T F++A E + G I +D KL VA DGH Sbjct: 120 NIQRNQPIVISQLT---LRDIIRQTIFSVADNENNKMMTGELIEI--KDNKLKVVALDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 R+++ V++ A+ ++VP+K + EI++I+ D V + ++++ I + ++ Sbjct: 175 RVSIRNVEL-KNPAEDVKVVVPKKTLNEIIKIVDGGIDDEVNIFVTDNHIIFEFDQTTVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 R+I+GE+ + ++ + ++++N +DR +I+ Sbjct: 234 SRIIEGEYFKIEQMLSADYETKIKINKREFFDCIDRATIL 273 >gi|111115265|ref|YP_709883.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo] gi|216263342|ref|ZP_03435337.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1] gi|110890539|gb|ABH01707.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo] gi|215980186|gb|EEC21007.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1] Length = 386 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 77/335 (22%), Positives = 157/335 (46%), Gaps = 25/335 (7%) Query: 17 ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76 A II +N + +L++ + L IK++ I IP + + ++A YD Sbjct: 21 AKGIILNRNMNDIWSALLIEVKNSNLIIKSTDRNIFFESTIPIVSETDFKVLINASNFYD 80 Query: 77 IVRKLQDGAQISF-FKENE-----LGTEVNISHGDSNFYLQ--SFPESEFPSTK----EE 124 V+ +I F EN +G + + +L+ +F E + E Sbjct: 81 AVKAFSFYKKIKIAFNENNSKLEIMGESKDEKEEEYEDHLKEPTFSYEEIENYNYDMVNE 140 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 +Y + E+ K ++ R F+ +E + LNG++F +ED KL V+T+GHR+++ Sbjct: 141 DYTFEIEIKQKSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDSKLLFVSTNGHRMSIC 199 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + ++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ ++ LI G Sbjct: 200 KTEVTVE--EDVNFIVPVK-IFNFLKHLMSGEGLVKIKSSDKKFYVEFDNYKIACSLISG 256 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +P+Y+++IP + V+ + L+ + RV++ ++ KL L+ +L + + D+ Sbjct: 257 NYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVD---KSRKLVLTFSELQLKLLGEDL 313 Query: 305 --GKA----IESMNVYYNECPMDICFNYKYLLEII 333 G+ I++ N Y+ + N Y +E I Sbjct: 314 ITGRKGEFFIKNSNYLYDGSDEVMAINISYFIEAI 348 >gi|154148349|ref|YP_001405625.1| DNA polymerase III subunit beta [Campylobacter hominis ATCC BAA-381] gi|153804358|gb|ABS51365.1| DNA polymerase III, beta subunit [Campylobacter hominis ATCC BAA-381] Length = 356 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 86/364 (23%), Positives = 175/364 (48%), Gaps = 39/364 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V++ + ++ + +E+K+ ++ H+L+ A DG+L IKA+ EI ++ + Sbjct: 1 MKVIVKKGVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYK-NRN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V V G T + L + ++ L+D +I+ G + + S + L + ++F Sbjct: 60 VTVIDEGYATANGSKLMNAIKGLEDD-EITL---ETAGNSLFVKQKRSKYKLPMYNYTDF 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E FE+ S +L +++ ++ T +Y LNG I E+ + L V+TD Sbjct: 116 PEFPTIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINL--VSTDT 173 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-----DSSVKVSLSESRIHLNIE 233 RL++ + A II+P+KA+ EI ++ S K D++V +++SES E Sbjct: 174 KRLSLYTIPNQTSTAN-EKIIIPKKAINEIQKLFSDKVEIFYDANVFLAVSES-----FE 227 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S +LI+G+FP Y ++ + + + + + + ++ M ++K+++ ++ Sbjct: 228 FFS---KLINGKFPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMC----DSMKITIKNN 280 Query: 294 KL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + ++ DN + IE+ N+ I K+L++ + NI +E F+ Sbjct: 281 SILFESISEDNSEAKTEIETSIQIENQIEFSI--RNKFLMDFLSNI-------EENSFKF 331 Query: 351 DSSN 354 D +N Sbjct: 332 DFNN 335 >gi|313667262|ref|YP_004049663.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM 14977] gi|313153893|gb|ADR37743.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM 14977] Length = 406 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 86/410 (20%), Positives = 163/410 (39%), Gaps = 55/410 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + ITVE + L R++ +++ P V L +G L + + ++ +PA Sbjct: 27 VTITVETKALKGALDRLARVLPARSSEPAYLSVALTPAEGALVLAGTNGAQDLELVLPAE 86 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--------LGTEVNISHGDSNFYLQS 112 + V A L +VR L G ++ E E T +++S GD L Sbjct: 87 APPGPTRLVPAAPLTQVVRSLGAG-TVTLTLEGETLTLEAGRFATRLHLSAGDLELPLDF 145 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + E +A +A + E R G+ ++ E L+ Sbjct: 146 GGDPLASLPAAELAALLEPVA------------YATSNENYRAVFTGVQLEVHPERLR-- 191 Query: 173 AVATDGHRLAV-----AEVDIVAQIAKMP-----------SIIVPRKAVGEILRILSSKD 216 VA+DG RLA+ E V + +P +++VP+ +V E+LR+L + Sbjct: 192 GVASDGFRLALVDRPLPEGAAVHRTFPVPEDGDGAAPEPLALVVPKASVVELLRVLRGVE 251 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 V++ R+ L+ E + + L+DG +P Y VIP + R+A+ R + Sbjct: 252 GVVQLHHRPGRLALHAEGVRYATALLDGTYPEYARVIPAEAPFVAEFDVRPFREALRRTT 311 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDN 335 +MS V L+ ++ + + D G+ E + + Y P+ N YL + + Sbjct: 312 VMSDATNHRVDLTFEEGRVRLVSEG-DYGRGEEVLEGIDYQGEPLTTALNASYLEDALGP 370 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ RLD + + + +D ++ + V++P+R+ Sbjct: 371 VARRA--------RLDLTGPTTPLAVRDAEALDGY------LAVVVPLRV 406 >gi|331086958|ref|ZP_08336034.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409619|gb|EGG89058.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 369 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 82/386 (21%), Positives = 189/386 (48%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A +++ A+ E+ I I + Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A + +IVRKL D I N L T + N +S + S P Sbjct: 61 ILQKGIIALDAKIFSEIVRKLPDNEVIIETNSN-LQTLITCEKAKFNISGKSGEDFSYLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++++ + L+ LK ++ +T F+++ + ++G F +++ LK+ V+ DGH Sbjct: 120 YIEKKDCI---TLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 R+++ ++++ + + ++VP K + EI +ILS + +S V + + + I + + Sbjct: 175 RISIRKIEL-KESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ ++ + ++R+N L +DR +++ + + ++++ + + + Sbjct: 234 SRLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + +G E + + + + I FN K+L++ + I D+EV ++ + Sbjct: 294 KIQS-QIGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FI KD + + Y+++P+ Sbjct: 348 FI----------KDEEQSYIYLILPV 363 >gi|288916501|ref|ZP_06410878.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] gi|288352101|gb|EFC86301.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] Length = 414 Score = 80.5 bits (197), Expect = 4e-13, Method: Compositional matrix adjust. Identities = 81/348 (23%), Positives = 155/348 (44%), Gaps = 20/348 (5%) Query: 42 LEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI 101 LEI A E+ + A V G + V LL D+VR L D + + T V I Sbjct: 78 LEISAFDGEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVLVW----ATATRVTI 133 Query: 102 SHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161 G ++F + + +SE E+ + V + A ++ L + Sbjct: 134 ECGTASFRIPTL-DSEDYPVLPVFPPPVGEVDTLGFAAAVAQVAPAAGRDDSLPVLTAVR 192 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII-VPRKAVGEILRILSSKDS-SV 219 I L L VATD +RLA+ + + ++ VP + + +I R+ +S ++ Sbjct: 193 LEIARGGLSL--VATDRYRLALRTIPWQPTVDDPEAVAHVPARLLADIARLPTSASRIAL 250 Query: 220 KVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 + + +S R L++ VRL++G FPNY+ ++P ++ + + L AV RV+ Sbjct: 251 GMGVDDSGVARFGLSVNGRQTIVRLLEGTFPNYRRLLPEASAFTVTAQTSVLAAAVRRVA 310 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 ++++ R ++ + S+ ++ + +A E + + Y + + FN +LL+ + + Sbjct: 311 LVAT-RTAPLRFTFSAGQVLAEAGDGGGAQACELVPLEYTGPELSVLFNPAFLLDGLAAV 369 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 DEVV ++++SS + KD+ + Y+LMP+R Sbjct: 370 EGDEVVFGFAAVDPNTTSSSPAV-------LTGKDDGEDYRYLLMPIR 410 >gi|325663384|ref|ZP_08151834.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325470838|gb|EGC74068.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 369 Score = 80.5 bits (197), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 82/386 (21%), Positives = 189/386 (48%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A +++ A+ E+ I I + Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G I + A + +IVRKL D I N L T + N +S + S P Sbjct: 61 ILQKGIIALDAKIFSEIVRKLPDNEVIIETNSN-LQTLITCEKAKFNISGKSGEDFSYLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++++ + L+ LK ++ +T F+++ + ++G F +++ LK+ V+ DGH Sbjct: 120 YIEKKDCI---TLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 R+++ ++++ + + ++VP K + EI +ILS + +S V + + + I + + Sbjct: 175 RISIRKIEL-KESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+GE+ ++ + ++R+N L +DR +++ + + ++++ + + + Sbjct: 234 SRLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + +G E + + + + I FN K+L++ + I D+EV ++ + Sbjct: 294 KIQS-QIGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FI KD + + Y+++P+ Sbjct: 348 FI----------KDEEQSYIYLILPV 363 >gi|323699690|ref|ZP_08111602.1| DNA polymerase III, beta subunit [Desulfovibrio sp. ND132] gi|323459622|gb|EGB15487.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans ND132] Length = 389 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 180/405 (44%), Gaps = 47/405 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R +I+E L + II K + LQ +G L I ++ +E G+ PA+ Sbjct: 1 MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 ++ G V YD+V++L+ +E V + + + Q Sbjct: 61 LEGEGLAGVQGRAFYDLVKQLRSDQGELTIHTDEANQNVLVEQKARKYKFPVNDPEWFQK 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF----HINEED 168 F S FP E+ VY + L ++++ F ++ E+ + I+ + Sbjct: 121 F--STFP---EDNTVY---WSGDFLHEIIDKISFCISDEDSMEAIACIYMVPRDKAGNKT 172 Query: 169 LKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 +++C + +GH+ A+ DI A + + +++ +K + E+ + L++ + +++++S Sbjct: 173 VEVCGL--NGHQFAMLNFVNDDIYAMLPE-EGVLIQKKYLAELKKWLTADE--IELAISN 227 Query: 226 SRIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSS 280 R+ + + ++ L ++PNY N + ND L VN +L A+ RV++ ++ Sbjct: 228 KRLFFRTGDKRETFTLPLSYYQYPNYNNFLARLNDDNVSTLEVNRLDLVDALSRVALFNT 287 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + S +++ ++ + G A ES++ + I F + L+EI+++ +S Sbjct: 288 DSNRCAYFSFDDNEVTVSAQGQETGTARESIDATFTGDMTRIAFPTRNLIEILNHFAS-- 345 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F L + + + G D +KD V ++MPM I Sbjct: 346 ---PTVKFTLTGTEAPCGLTGPD-----DKDYNV----IVMPMMI 378 >gi|317180278|dbj|BAJ58064.1| DNA polymerase III subunit beta [Helicobacter pylori F32] Length = 374 Score = 80.1 bits (196), Expect = 5e-13, Method: Compositional matrix adjust. Identities = 89/395 (22%), Positives = 181/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++D L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKDQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L ++D+ A S+ + E + N K+ LE ++ + + + V + Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLKC 341 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S I+ + +N+ + K++ ++MP+ + Sbjct: 342 NEPSSPFLIQEPLDEKQNHLNAKIST--LMMPITL 374 >gi|291526545|emb|CBK92132.1| DNA polymerase III, beta subunit [Eubacterium rectale DSM 17629] Length = 370 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 138/280 (49%), Gaps = 9/280 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++++L+ + + + + T+ + +L+ A+ +++ A+ E+ I I + Sbjct: 1 MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 ++ G I + A + +IVRKL D ++ + T ++ N +S + S P Sbjct: 61 IEERGIIALDAKIFSEIVRKLPDN-DVTIETDASFKTVISCEKAKFNIIGKSGDDFSYLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S L+ LK ++ +T F++A + + G F I E KL V+ DGH Sbjct: 120 YVERNE---SIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ +++ ++VP K + EI +I+ S D V + ++ + I E+ ++ Sbjct: 175 RISIRYIEMKNHYDS-KKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 RLI+GE+ ++ D ++R+N L + +DR +++ Sbjct: 234 SRLIEGEYFKIDQMLSSDYDTKVRINKRELLECIDRATLL 273 >gi|256823907|ref|YP_003147867.1| DNA polymerase III subunit beta [Kytococcus sedentarius DSM 20547] gi|256687300|gb|ACV05102.1| DNA polymerase III, beta subunit [Kytococcus sedentarius DSM 20547] Length = 378 Score = 80.1 bits (196), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 85/397 (21%), Positives = 170/397 (42%), Gaps = 34/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+ V+R + E + R + + +PV V L A+ G L + A + E++G + Sbjct: 1 MEFQVQRDVLSEAVAWVVRGLTNRPPVPVLAGVRLVADPAGTLTLSAF--DYEVSGEVTV 58 Query: 60 SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 DV G V LL +I R L D + + G ++ ++ G S F L P ++ Sbjct: 59 EADVVTGGEALVLGRLLSEISRSLPD----KPVRIQQDGGKLQVTCGSSRFALLEMPLAD 114 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS S + ++ V + A + L G+ H+ + ++ +ATD Sbjct: 115 YPSLPTSPEA-SGTVDGALFTKAVAQVSVAADRSDALPILTGV--HVEFDGERITMLATD 171 Query: 178 GHRLAVAEVDIVAQIAKMPSI----IVPRKAVGEILRILSSKDSSVKVSLSE-----SRI 228 +R+A E+ + PS +VP + + + + L + SV ++L + I Sbjct: 172 RYRMARREL---TWTPRDPSAHHVALVPSRTLSDTAKSLGAV-GSVDIALGDEAGGKGLI 227 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + RL+DGE+P ++ P ++D + + + L +A+ RVS+++ R V+L Sbjct: 228 GFAAGQRHSTTRLLDGEYPKVSSIFPTTSDVDAVMETSALVEAIKRVSLVAE-RTTPVRL 286 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + + D +A E++ + +D+ FN +LL+ + + + Sbjct: 287 RFTPGSVAIEAGTGDDAQASEAVECTLDGDEIDVAFNPGFLLDGLGALGT-----PFARM 341 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ ++ D+ + YV+MP+R Sbjct: 342 SFTQPGKPALLTGQ-AEADGEADDAFS--YVIMPVRF 375 >gi|314922679|gb|EFS86510.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL001PA1] gi|314965764|gb|EFT09863.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA2] gi|314982905|gb|EFT26997.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA3] gi|315091211|gb|EFT63187.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA4] gi|315094445|gb|EFT66421.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL060PA1] gi|315105165|gb|EFT77141.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA2] gi|327328940|gb|EGE70700.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL103PA1] Length = 414 Score = 79.7 bits (195), Expect = 6e-13, Method: Compositional matrix adjust. Identities = 96/403 (23%), Positives = 177/403 (43%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 29 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 88 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G VS LL DI R L + QI+ ++++ G + F LQ+ P E+P Sbjct: 89 VDEPGESLVSGKLLADIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 143 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + +SV V + A +E+ G+ IN E L L +ATD + Sbjct: 144 DLPHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 200 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 R+A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 201 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 259 Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ Sbjct: 260 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 318 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEVVD 343 ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 319 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 373 Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 374 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 412 >gi|65319987|ref|ZP_00392946.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bacillus anthracis str. A2012] Length = 236 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 8/205 (3%) Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201 ++T FA+A E R+ L G+ HI + KL ATD HRLA+ E I + + IVP Sbjct: 6 KQTVFAVAKNESRHVLTGV--HIELDHNKLICAATDSHRLAIRETLISTNMK--ANCIVP 61 Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261 + E+L++++S V + LSES I + ++ RLI+G++PN +IP + Sbjct: 62 SATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIEGKYPNISTLIPNEFQTVI 121 Query: 262 RVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNP-DMGKAIE--SMNVYYNE 317 ++ + Q VDR S+++S V L + ++ N +GK E ++V + Sbjct: 122 NIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQISSNASQIGKISEKQQIDVIQGK 181 Query: 318 CPMDICFNYKYLLEIIDNISSDEVV 342 ++I F+ +++L+ + I + V Sbjct: 182 KQLNISFDGRFMLDALRAIKEETVT 206 >gi|308063701|gb|ADO05588.1| DNA polymerase III subunit beta [Helicobacter pylori Sat464] Length = 374 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSSIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|50839100|gb|AAT81767.1| DNA polymerase III, beta chain [Propionibacterium acnes KPA171202] gi|332674400|gb|AEE71216.1| DNA polymerase III subunit beta [Propionibacterium acnes 266] Length = 503 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 95/403 (23%), Positives = 178/403 (44%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 118 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 177 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G VS LL DI R L + QI+ ++++ G + F LQ+ P E+P Sbjct: 178 VDEPGESLVSGKLLADIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 232 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +SV V + A +E+ G+ IN E L L +ATD + Sbjct: 233 DLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 289 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 R+A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 290 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 348 Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ Sbjct: 349 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 407 Query: 290 LSSDKLCMTVDNPDMGKAIESMNV----YYNECP--MDICFNYKYLLEIIDNISSDEVVD 343 ++ D + ++ D +A E++ + + P FN YL + + + + Sbjct: 408 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 462 Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 463 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 501 >gi|283953663|ref|ZP_06371194.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni 414] gi|283794704|gb|EFC33442.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni 414] Length = 355 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 77/346 (22%), Positives = 168/346 (48%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + I +N L I + + L F +FP Sbjct: 61 RVESNGFATANARSIADVIKSLNNEEVILETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNIEGKNHFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + + +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKTNN--QEFNFSIPKKAIIEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++++++ + +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKINVVT----EKMKLHFNKDKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E + NE ++ KYLL+ + +I ++ Sbjct: 286 ISLDNMEAKTELE-IQTGVNE-EFNLTIKIKYLLDFLTSIEEEKFT 329 >gi|261884881|ref|ZP_06008920.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 304 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 71/298 (23%), Positives = 144/298 (48%), Gaps = 16/298 (5%) Query: 22 ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRK 80 ++K+ +S H+ L A DG+L IKA+ EI + + A++ G T + L DI++ Sbjct: 22 DKKDLSSISSHIFLSARDGVLNIKAADNEIGLEYKVKNATIADEGMATANGKKLLDIIKS 81 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNL 140 L+DG + +N L I +S + L +FP E F++ + L Sbjct: 82 LKDGDIMLETIQNHLY----IKQNNSKYRLPMQKPEDFPEFPSLENKKKFDINAGSLSKS 137 Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200 +++ ++ + L G I ++ + L V TD RL+V +++I +Q SII+ Sbjct: 138 LKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTKRLSVYQLEINSQNDPF-SIII 194 Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 P+KA+ EI ++ ++++ E+ ++ +LI+G +P+Y V+P + Sbjct: 195 PKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFTKLINGRYPDYTRVVPNEIKQN 251 Query: 261 LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318 + +N + + + +S++S + VK++++ D + N D +A + + + EC Sbjct: 252 IILNREKIIEGIKTISMLSEI----VKITIAPDNISFERINDDYSEAKTIIRI-FKEC 304 >gi|218778134|ref|YP_002429452.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] gi|218759518|gb|ACL01984.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 370 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 13/235 (5%) Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 PE +FP E + F++ L+ L+ +T + E + + H+ + L Sbjct: 112 PE-DFPEIPEPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGAHLARDGEHLVI 170 Query: 174 VATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 TDG +LA I Q A++P II+ + +++ +K++ V+L + HL+ Sbjct: 171 TTTDGCQLARGSFPI--QDARLPEKGIILHKTGAAKLMEF--AKNAPGDVALGVTSSHLS 226 Query: 232 IESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 ES + + RL+ G++P+ +IP D +N A+ RV I++S + QA L+ Sbjct: 227 AESQNERLISRLVQGDYPDTARIIPVL-DTGFAINRFEFLAALKRVGILTSEKYQAASLA 285 Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEV 341 L ++ +TVDNP++G + E+++ ++ P C+N L + ++S+ V Sbjct: 286 LEHSRITVTVDNPELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTSENV 340 >gi|153952198|ref|YP_001397275.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. doylei 269.97] gi|152939644|gb|ABS44385.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 355 Score = 79.7 bits (195), Expect = 7e-13, Method: Compositional matrix adjust. Identities = 75/346 (21%), Positives = 166/346 (47%), Gaps = 21/346 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N L I + + L F +FP Sbjct: 61 RVESSGFATANAKSITDVIKNLNNEEIVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + E+ Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + +K+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKNKIIFEG 285 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++DN + +E E ++ K+LL+ + +I ++ Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329 >gi|224534779|ref|ZP_03675351.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S] gi|224514027|gb|EEF84349.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S] Length = 385 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 74/332 (22%), Positives = 153/332 (46%), Gaps = 20/332 (6%) Query: 17 ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76 A II +N + +L++ L I+++ I IP + + ++A YD Sbjct: 21 AKGIILNRNMNDIWSALLIEVEKSNLIIRSTDRNIFFESLIPIVSETDFKVLINASNFYD 80 Query: 77 IVRKLQDGAQISF-FKENELGTEV-NISHGDSNFYLQSFPESEFPSTK---------EEE 125 V+ +I F EN E+ S + Y E F + E+ Sbjct: 81 AVKAFSFCKKIKVVFNENNSKLEIMEESKNEKEEYEDHLKEPTFSYEEIENYNYDMVNED 140 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 Y + E+ + K ++ R F+ +E + LNG++F +ED +L V+T+GHR+++ Sbjct: 141 YTFEIEVKQTSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDSQLLLVSTNGHRMSICR 199 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 +++ + + + IVP K + L+ L S + VK+ S + ++ ++ ++ LI+G Sbjct: 200 TEVMVE--ENVNFIVPVK-IFNFLKHLMSGEGMVKIKSSNKKFYVEFDNYKIACSLINGN 256 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 +P+Y+++IP + V+ + L+ + RV++ + + + L+ S +L + ++ G Sbjct: 257 YPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVD-KSRKLVLNFSESQLKLLGEDLITG 315 Query: 306 KA----IESMNVYYNECPMDICFNYKYLLEII 333 + I++ N Y+ + N Y +E I Sbjct: 316 RKGEFFIKNPNYLYDGSDEVMAINISYFIEAI 347 >gi|313835168|gb|EFS72882.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA2] gi|314929144|gb|EFS92975.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL044PA1] gi|314970907|gb|EFT15005.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA3] Length = 410 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 95/405 (23%), Positives = 178/405 (43%), Gaps = 41/405 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I +ER + E + A R + + T+P+ + ++A D + + AS E + A Sbjct: 25 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQ 84 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 VD G VS LL DI R L + K + T+ +++ G + F LQ+ P E Sbjct: 85 VDEPGEALVSGKLLADIARSLPN-------KPVRITTDPAKMDLVCGSARFTLQALPVDE 137 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P + + + +S+ V + A +E+ G+ IN E L L +ATD Sbjct: 138 YPDLPQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATD 194 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231 +R+A+ E+ + +VP K + E R ++S + V ++LS E + Sbjct: 195 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 253 Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + M+ RL+ GEFP ++++ + +R L +V RVS+++ R ++ Sbjct: 254 GDGANGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 312 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341 + ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 313 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 369 Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 370 --PYVHFSFTAPGKPCLVTGLNDLDGKPETDYR----HVIMLMRL 408 >gi|317155006|ref|YP_004123054.1| DNA polymerase III subunit beta [Desulfovibrio aespoeensis Aspo-2] gi|316945257|gb|ADU64308.1| DNA polymerase III, beta subunit [Desulfovibrio aespoeensis Aspo-2] Length = 389 Score = 79.7 bits (195), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 87/405 (21%), Positives = 180/405 (44%), Gaps = 47/405 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R +I+E L + II K + LQ +G L I ++ +E G+ PAS Sbjct: 1 MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 ++ G V YD+V++L++ + +E V + + + Q Sbjct: 61 IEEDGLAGVQGRAFYDLVKQLRNDQGELTLRTDEAKQNVLVEQKAKKYKFPVNDPEWFQK 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE----ED 168 F S FP E V+ + L ++++ F ++ E+ + I+F E + Sbjct: 121 F--SSFP---ENGTVF---WSGDFLHEIIDKIAFCISDEDSMEAIACIYFVPRESMGVKR 172 Query: 169 LKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 +++C + +GH+ A+ DI A + + +++ +K +GE+ + L+S + +++++S Sbjct: 173 VEVCGL--NGHQFAMFNFVNDDIYAMLPE-EGVLIQKKYIGELKKWLTSDE--IELAISH 227 Query: 226 SRIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSS 280 R+ + + ++ L ++PNY N + D L V L A+ RV++ ++ Sbjct: 228 KRLFFRTGDQRETFTLPLSYYQYPNYNNFLAKLGDDNVSTLEVKRLELVDALSRVALFNT 287 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + ++ ++ + G A ES++ + I F + L+EI+++ +S Sbjct: 288 DSNRCAYFTFGEGEVTISAQGQETGTARESIDATFAGDMKRIAFPTRNLIEILNHFNS-- 345 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F L + + + G D ++D V ++MPM I Sbjct: 346 ---PTVKFTLTGTEAPCGLTGVD-----DRDYNV----IVMPMMI 378 >gi|225386352|ref|ZP_03756116.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme DSM 15981] gi|225047534|gb|EEG57780.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme DSM 15981] Length = 373 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 81/390 (20%), Positives = 183/390 (46%), Gaps = 31/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ ++ + + + K T+ + +L+ A+ +++ + E+ I + Sbjct: 1 MKLRFQKDALVNGINIVLKAVPSKTTMSILECILIDASGSEIKLTGNDMELGIETTVAGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118 + G I + A L +I R++ + E++ I +S F +Q EF Sbjct: 61 ILEHGKIALDAKLFSEITRRVSSESSAVVSIESDERFNTTIRCENSVFNIQGRDGEEFAY 120 Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + ++Y+ L+ LK ++++T F+++ + ++G F +NE L++ V+ D Sbjct: 121 LPYIERDKYIC---LSQFTLKEVIQQTIFSISPNDSNKMMSGELFEVNENQLQV--VSLD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236 GHR+++ +V + + +IVP K +GE+ +IL+ + V + S + I +S Sbjct: 176 GHRISIRKVRLKDHYDDI-KVIVPGKTLGEVSKILNGDNEKEVLIYFSANHILFEFDSTI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSLSSD 293 + RLI+GE+ ++ + ++ VN ++R +I+ +R K ++++ + Sbjct: 235 VVSRLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATIL--IRENDKKPLIINITDN 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + + N G + ++ N + I FN K+L++ + I D+E+ + + Sbjct: 293 SMQLKL-NSSFGSMNADLLIHKNGKDIMIGFNPKFLIDALRAID-----DEEINLYMMNP 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S FI KD++ N Y+++P+ Sbjct: 347 KSPCFI----------KDDEENYIYLILPV 366 >gi|271970493|ref|YP_003344689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513668|gb|ACZ91946.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 365 Score = 79.3 bits (194), Expect = 8e-13, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 154/344 (44%), Gaps = 16/344 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + +PV +LL+A D L+ + A ++ +I A Sbjct: 1 MKFQVNRDVLADAVAWVARALPNRPALPVLSGLLLEAGDDLV-LSAFDYDVSARASIEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + +L +I R L + G+E ++ G + F L + P +FP+ Sbjct: 60 VAEPGRVLIPGRILAEITRSLP-AEPVEIVTS---GSEAVLTCGSAEFGLLTMPVEDFPT 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V + V + A + +E L GI I+ E + + A TD +R Sbjct: 116 LPSMPPKIG-AVGGGVFASAVGQVAPAASRDESLPMLTGIRIDISGETVAMAA--TDRYR 172 Query: 181 LAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A E + + +VP + + E+ R L + V ++L + S +V Sbjct: 173 IAAREFGWRPEEPGAAAAAMVPARVLVEVARSL--RGGEVSMALGDGVAGFESVGRSTTV 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVN--CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL+D +F +Y++ + S+D +R + A+ RV++++ R A++LS S ++ + Sbjct: 231 RLLDEQFIDYRSRL--SDDWSIRADLRVAPFIDAIKRVALVAE-RNTAIRLSFSQGQVLI 287 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 D+G+ E M + + I F ++LL+ + + ++ V Sbjct: 288 QAGGGDIGRGTEVMEAELSGDGIQIAFQSQFLLDGLAGVETEFV 331 >gi|146319851|ref|YP_001199562.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33] gi|145690657|gb|ABP91162.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33] Length = 310 Score = 79.3 bits (194), Expect = 9e-13, Method: Compositional matrix adjust. Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 12/286 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 2 IQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQ 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A ++V + D + F E E ++ ++ G S L+ Sbjct: 62 DENAGLLISSPGSILLEAGFFINVVSSMPD--LVLDFNEIE-QKQIVLTSGKSEITLKGK 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P +E L + VLK + T FA +T+E R L G+ F + E L Sbjct: 119 EAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENK-NLQT 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HR++ ++ ++ ++++P +++ E + +V+V S ++I E Sbjct: 178 VATDSHRMSQRKL-VLDTSGDDFNVVIPSRSLREFTADFTDDIETVEVFFSNNQILFRSE 236 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +S RL++G +P+ +IP + + NLR +++R ++S Sbjct: 237 HISFYTRLLEGTYPDTDRLIPTEFNTTAIFDTANLRHSMERARLVS 282 >gi|188527661|ref|YP_001910348.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470] gi|188143901|gb|ACD48318.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470] Length = 374 Score = 79.3 bits (194), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ +H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENEMH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|332668534|ref|YP_004451541.1| DNA polymerase III subunit beta [Cellulomonas fimi ATCC 484] gi|332337571|gb|AEE44154.1| DNA polymerase III, beta subunit [Cellulomonas fimi ATCC 484] Length = 376 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 87/393 (22%), Positives = 174/393 (44%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+ V+R + + + R + + +PV V ++A+ G +++ + E+ IPA Sbjct: 1 MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADSTGTIQLSSFDYEVSARSQIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116 V G++ VS LL +I R L D K ++ GT+V ++ G S F L + P Sbjct: 61 DVAEPGTVLVSGRLLAEISRALPD-------KPVDVVLDGTKVVVTCGASRFTLLTMPVE 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++PS + L + V + A + ++ L G+ I E K+ +AT Sbjct: 114 DYPSLPVMPATAG-TVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGE--KVTLLAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR----IHLN 231 D +RLA+ E+ + ++ + R + + + + L S SV V+LS I Sbjct: 171 DRYRLALRELTWKPSAPDISTVALVRARTLSDAAKSLGSA-GSVTVALSTGAGVDLIGFE 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + L+DG++P + + P V+ L +A RV++++ R ++L+ + Sbjct: 230 AGGRQTTSLLVDGDYPAVRRLFPDETPIHAIVSTHALAEAAKRVALVAE-RNTPIRLAFT 288 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ + D +A E++ + + FN ++LL+ + + D RL Sbjct: 289 QGQVVLDAGQGDDAQASEALEATLVGDDITVAFNPQFLLDGLGAL-------DTTFVRLS 341 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + ++S D+K Y+L+P+R Sbjct: 342 FTHPNKPVEFTGQESLEG-DDKQEYRYLLVPIR 373 >gi|315650191|ref|ZP_07903266.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum DSM 3986] gi|315487548|gb|EFU77856.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum DSM 3986] Length = 383 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 88/394 (22%), Positives = 188/394 (47%), Gaps = 40/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ ++ L + + K + +L+ A D + + A+ E+ I + A Sbjct: 15 MNLKFQKTQLVNALSIVMKAVSTKTASVILESILINATDNRVVLDATDNELSIQTEVDAI 74 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEF- 118 + G + ++A L +IVRK +D + I + + T V + F + EF Sbjct: 75 IVEEGGVVLNAKLFSEIVRKFEDNESLIELDVDKDFKTTVKCEQ--AVFNIMGIDPVEFI 132 Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P+ K ++ S +++ LK ++ +T F+ A +I + G + + K V Sbjct: 133 PMPNIKRDD---SIKMSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNVAKF--VTL 187 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--- 233 DGHR+++ ++++ + +VP K++ EI+RI+ S D+ V++ S+ H+ E Sbjct: 188 DGHRMSIRNINLIGEYED-HRCVVPVKSLQEIMRIIGS-DTQKNVNIYFSKDHILFEFDR 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSL 290 +L +S R++DGEF ++++ D ++ V+ + A+++ I+ +R K L + Sbjct: 246 TLVLS-RILDGEFFRIESMLSRDYDTKVTVSRLKFQSAIEQSMIL--IRENEHKPMILDI 302 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FR 349 + L ++V N +G +N+ + + I FN K++++ + +V+DD+ V Sbjct: 303 ENGMLKISV-NSSLGFMDTKVNIEKSGSDLKIAFNPKFVVDAL------KVIDDDFVDIY 355 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ S FIR DN+ Y+++P+ Sbjct: 356 FTNAKSPCFIR----------DNENTYTYLILPV 379 >gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656] gi|238874106|gb|ACR73813.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656] gi|291529188|emb|CBK94774.1| DNA polymerase III, beta subunit [Eubacterium rectale M104/1] Length = 370 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 65/280 (23%), Positives = 137/280 (48%), Gaps = 9/280 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++++L+ + + + + T+ + +L+ A+ +++ A+ E+ I I + Sbjct: 1 MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 ++ G I + A + +IVRKL D ++ + T ++ N +S + S P Sbjct: 61 IEERGIIALDAKIFSEIVRKLPDN-DVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E S L+ LK ++ +T F++A + + G F I E KL V+ DGH Sbjct: 120 YVERNE---SIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ +++ ++VP K + EI +I+ S D V + ++ + I E+ ++ Sbjct: 175 RISIRYIEMKNHYDS-KKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 RLI+GE+ ++ D ++R+N L +DR +++ Sbjct: 234 SRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLL 273 >gi|307637177|gb|ADN79627.1| DNA polymerase III beta subunit [Helicobacter pylori 908] gi|325995766|gb|ADZ51171.1| DNA polymerase III beta subunit [Helicobacter pylori 2018] gi|325997362|gb|ADZ49570.1| DNA polymerase III beta subunit [Helicobacter pylori 2017] Length = 374 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ V+ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -AFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|227487661|ref|ZP_03917977.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51867] gi|227541369|ref|ZP_03971418.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51866] gi|227092355|gb|EEI27667.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51867] gi|227182920|gb|EEI63892.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51866] Length = 391 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 91/395 (23%), Positives = 175/395 (44%), Gaps = 29/395 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D + + + + PV +++ A D LE+ E+ + A V Sbjct: 10 VAQDDFADAVSWVAHNLPTRPVQPVLRGLVITATDDGLELAGFDYEVSTKVRLNAQVLQN 69 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G + V+ L+ DI L G + +E ++V +S G + F L P E+PS Sbjct: 70 GRLAVAGKLISDITSSLAAG--TVEVETDETHSKVLLSCGKAKFELPIIPLDEYPSLPAM 127 Query: 125 EYVYSFELASSV----LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E A V V + A ++ L GI H++ E L ATD R Sbjct: 128 P-----ETAGRVDPHQFTEAVSQVATAAGKDDALPMLTGI--HVDIEGSDLIMAATDRFR 180 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 LAV ++ ++ + S+++P + + + + + + + ++V+L I + E+ + Sbjct: 181 LAVRHLEWEPSRELEKSSLLIPARTLLDTAKSMDNGLNKPLEVALGNGLIGMVTENRQTT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL+D EFPNY ++P +++ + L +A+ RVS+++ Q ++++ S+ ++ +T Sbjct: 241 TRLLDAEFPNYNPLLPKTHNYIATCDVDELLKALRRVSLVADKSGQ-IRMTFSAGQVSLT 299 Query: 299 VDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 N + G A E + + E + I FN YL + ++ + S V+F SN S Sbjct: 300 AANSESGAAEEVLPAAFQGVEDSLVIAFNPAYLRDGLNVMRS-----KRVMFGFTDSNRS 354 Query: 357 VFIRGKDKDSKNNKDNKVNA------FYVLMPMRI 385 + + ++ + A Y+LMP+R+ Sbjct: 355 AILTPEPEELPEAAADGSFASPHSAVTYLLMPVRL 389 >gi|260904980|ref|ZP_05913302.1| DNA polymerase III, beta subunit [Brevibacterium linens BL2] Length = 379 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 96/394 (24%), Positives = 172/394 (43%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K V R + + + A + + + + PV +L+ A G ++ S + E++ + + Sbjct: 8 LKFKVNRDVLADAVTWATKTLPSRPSAPVLTGILITAEAGG-TVRLSVFDYEVSSRVEIA 66 Query: 61 VDVC--GSITVSAHLLYDIVRKL--QDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 DV G++ VS LL DI + L QD ++ ++V+++ S F L + P Sbjct: 67 ADVVTPGTVLVSGRLLADISKALPNQD------VTLEQIDSKVDVTCSSSRFSLMTMPVG 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+PS + S +++ +N V + A + ++ L + I E K+ +AT Sbjct: 121 EYPSLPQVPDA-SGTVSAGEFQNAVSQVTIATSKDDTLPILTSVRVEIEGE--KVTLLAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLS----ESRIHLN 231 D +RLAV E + ++ + R G L +S S V + LS + I Sbjct: 178 DRYRLAVREFTWNPGRPDVSAVALLR---GRTLSDVSKSLGGDVTIGLSNDAGKDLISFT 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + L++GE+P +++ P S V LR+AV RVS+++ R ++ +S Sbjct: 235 SAGRVTTSLLVEGEYPKVRSLFPDSVPIHAIVETGVLREAVRRVSLVAE-RNTPLRFEVS 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + D +A E++ P+ + FN Y+ E + I S V F Sbjct: 294 DGMLTLHAGTGDDAQASEAVEAVLQGDPITVGFNPHYIAEGLAAIES-----PYVNFSFT 348 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I G+ +D ++ D Y+LMP RI Sbjct: 349 QPMKPVIISGQ-RDLESTADESYR--YLLMPTRI 379 >gi|261838254|gb|ACX98020.1| DNA polymerase III beta subunit [Helicobacter pylori 51] gi|317179130|dbj|BAJ56918.1| DNA polymerase III subunit beta [Helicobacter pylori F30] Length = 374 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ V+ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|158421575|ref|YP_001527802.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] gi|158342818|gb|ABW35104.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] Length = 367 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 14/193 (7%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 +A + E + GI F E L+L VA+DG+R+A A D+ + I+ V Sbjct: 148 YAASHEAFQAVFRGILFEGRESGLRL--VASDGYRVATA--DLPTPPPQPFKAIIHAAHV 203 Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL--IDGEFPNYQNVIPCSNDKELRV 263 E+LR+L +D++ SL HL + + ++V L +DGEFP Y+ VIP V Sbjct: 204 RELLRLLGGRDTA---SLQFDGTHLTVRAGGITVSLPYMDGEFPAYERVIPAVTGG-FAV 259 Query: 264 NCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMNVY--YNECPM 320 LR++V+RV+IMS ++L+L+ +L +T D G + + V + + P Sbjct: 260 PAQALRESVNRVAIMSDKNANNRLELTLAEGRLVLTAHG-DYGTGQDVLEVTDRHGDPPA 318 Query: 321 DICFNYKYLLEII 333 + N ++L E + Sbjct: 319 QLAVNARFLQEAL 331 >gi|254779479|ref|YP_003057584.1| DNA polymerase III subunit beta [Helicobacter pylori B38] gi|254001390|emb|CAX29379.1| DNA polymerase III subunit beta [Helicobacter pylori B38] Length = 374 Score = 79.0 bits (193), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|257437733|ref|ZP_05613488.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] gi|257200040|gb|EEU98324.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] Length = 221 Score = 78.6 bits (192), Expect = 1e-12, Method: Compositional matrix adjust. Identities = 52/185 (28%), Positives = 100/185 (54%), Gaps = 7/185 (3%) Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS- 217 G F I+ + KL VA DG+RLA+ E + A K IIVP K + E+ +L++ D Sbjct: 9 GELFEISPD--KLTVVALDGYRLAIVERPVEA--IKEIRIIVPSKTMNEVSHLLANDDEE 64 Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 +V +S + + ++ RLI+GEF NY NVIP + + ++ + ++R S+ Sbjct: 65 TVHISANRRYVVFTTAGYTIMSRLIEGEFLNYHNVIPNGSRTSVVLDTKEFIETIERASL 124 Query: 278 MSSVRIQ-AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 + + R++ +++S + K+ + ++G+ ++ N ++I FN +YLL+ + N Sbjct: 125 IITERLKNPLRISFTEGKVVVRCQT-NLGRVVDEFNAQCEGDEVEIGFNNRYLLDALRNA 183 Query: 337 SSDEV 341 +++V Sbjct: 184 RTEQV 188 >gi|317181822|dbj|BAJ59606.1| DNA polymerase III subunit beta [Helicobacter pylori F57] gi|332673707|gb|AEE70524.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori 83] Length = 374 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 84/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ V+ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|308061829|gb|ADO03717.1| DNA polymerase III subunit beta [Helicobacter pylori Cuz20] Length = 374 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|206603336|gb|EDZ39816.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way CG'] Length = 387 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 94/404 (23%), Positives = 176/404 (43%), Gaps = 42/404 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV++ L+ L + ERKN + V +L++A D + A+ + +P Sbjct: 1 MEITVDQEAFLDGLQRVALLAERKNLVQVGSFILIEARDQKAILFATDNQTGGRFEVPCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFP 119 V G TV+ L+ + R+L G ++S + EN I + L+ E+ Sbjct: 61 VRTPGKTTVAGKKLHQLFRELPAG-KVSLTRLEN---GSTRIERERLMYDLKGIDPDEYV 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATD 177 E + YSF ++ + L+ +T + +E + +NG+ FH E ++L V TD Sbjct: 117 GFPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESK-PMNGVLFHRVREGSTVRLNIVGTD 175 Query: 178 GHRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 GHRL V D+ Q S + RK + L + D E ++ Sbjct: 176 GHRLHHGTVLLGEDAGFDLAGQTE---SRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVN 232 Query: 230 LNIESLSMS-----VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 + RL+ FPNY++ P + + + + L ++ R+S++S + + Sbjct: 233 PKYATFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAE 292 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY---KYLLEII--DNISSD 339 V S + L ++ N ++G++ E++ V+ P + FN + LL++ + + D Sbjct: 293 IV-FSWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMD 351 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V+D + SS S++ ++ DS+ YV+MP+ Sbjct: 352 AVMDTDPA--KSSSMPSIWSCAEEPDSR----------YVIMPL 383 >gi|51598692|ref|YP_072880.1| DNA polymerase III, subunit beta [Borrelia garinii PBi] gi|51573263|gb|AAU07288.1| DNA polymerase III, subunit beta [Borrelia garinii PBi] Length = 386 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 13/216 (6%) Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E+Y + EL K ++ R F+ +E + LNGI+F ED KL V+T+GHR+++ Sbjct: 140 EDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGIYF-TKGEDSKLLLVSTNGHRMSI 198 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ ++ LI Sbjct: 199 CKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYVEFDNYKIACSLIS 255 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G +P+Y+++IP + + V+ + L+ + RV++ ++ KL L+ +L + D Sbjct: 256 GNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYVD---KSKKLILTFSELQFKLLGED 312 Query: 304 M--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 + G+ I++ N Y+ + N Y +E I Sbjct: 313 LITGRKGEFFIKNPNYLYDGSDEVVAINISYFIEAI 348 >gi|124516517|gb|EAY58025.1| DNA polymerase III, beta chain [Leptospirillum rubarum] gi|206603406|gb|EDZ39886.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way CG'] Length = 387 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 93/404 (23%), Positives = 176/404 (43%), Gaps = 42/404 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV++ L+ L + ERKN + + +L++A D + A+ + +P Sbjct: 1 MEITVDQEAFLDGLQRVALLAERKNLVQIGSFILIEARDQKAILFATDNQTGGRFEVPCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFP 119 V G TV+ L+ + R+L G ++S + EN I + L+ E+ Sbjct: 61 VRTPGKTTVAGKKLHQLFRELPSG-KVSLTRLEN---GSTRIERERLMYDLKGIDPEEYV 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATD 177 E + YSF ++ + L+ +T + +E + +NG+ FH E ++L V TD Sbjct: 117 GFPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESK-PMNGVLFHRVREGSTVRLNIVGTD 175 Query: 178 GHRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 GHRL V D+ Q S + RK + L + D E ++ Sbjct: 176 GHRLHHGTVLLGEDAGYDLAGQTE---SRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVN 232 Query: 230 LNIESLSMS-----VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 + RL+ FPNY++ P + + + + L ++ R+S++S + + Sbjct: 233 PKYATFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAE 292 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY---KYLLEII--DNISSD 339 V S + L ++ N ++G++ E++ V+ P + FN + LL++ + + D Sbjct: 293 IV-FSWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMD 351 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V+D + SS S++ ++ DS+ YV+MP+ Sbjct: 352 AVMDPDPA--KSSSMPSIWSCAEEPDSR----------YVIMPL 383 >gi|193216432|ref|YP_001999674.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1] gi|193001755|gb|ACF06970.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1] Length = 365 Score = 78.6 bits (192), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 89/340 (26%), Positives = 159/340 (46%), Gaps = 20/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I + + + E + + +++ IPV +L++A D +L I AS EI I IP+S Sbjct: 1 MEIKINKWLLDEAIERVAKAVDQNPFIPVMKGILVEAQDSMLTIIASNGEISIKHVIPSS 60 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 VD+ G I V LL +IV+KL DG IS E L T ++ + L + S Sbjct: 61 VDMQILSPGIILVELSLLRNIVKKL-DG-DISLKSEGNLLT---VTTEFDRYSLNLYDTS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P Y + ++ LK++ + FA + E L + +I+ D KL VAT Sbjct: 116 EYPEIDFAVYGETLKIKWDELKSITKNVSFAASNNEANLVLCCV--NISAHDGKLKFVAT 173 Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 + +R A E+D A ++ + K + + L KD SV +++SE +I ++S Sbjct: 174 NKYRYAEETKEIDSDANF----NVSIQAKNLKD-LTAFDFKD-SVLLNISEHKIAFEVDS 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + ++++ + + ++P L++ L + + S++ S +KLS+ Sbjct: 228 TIIQSKVVNQPYQDVSRIVPREFATCLKIEKRELNNLLSKASVIISETNNKIKLSIVDGI 287 Query: 295 LCMTVDNPDMGKA-IESMNVYYNECPMDICFNYKYLLEII 333 L + ++ A I + N Y+ + + N KYL E I Sbjct: 288 LMIASTRDEIANAEIITKNFSYDGDELKLALNSKYLREAI 327 >gi|194097592|ref|YP_002000628.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] gi|193932882|gb|ACF28706.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] Length = 167 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 49/179 (27%), Positives = 100/179 (55%), Gaps = 14/179 (7%) Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 E+ ++L++ D +++ L + ++ ++ ++IDG+FP++ VIP NDK ++ Sbjct: 3 ELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRA 62 Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY 326 L A++RVSI+++ + + +L L L + N + +A E + + Y +++ FN Sbjct: 63 ELLGALERVSILANEKFRGARLFLQPGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNI 122 Query: 327 KYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 YL++++ NI SD++ ++ F D++ S++F NN + K Y++MPMRI Sbjct: 123 GYLMDVLRNIHSDDM---QLAFG-DANRSTLFT------VPNNPNFK----YIVMPMRI 167 >gi|225552236|ref|ZP_03773176.1| DNA polymerase III, beta subunit [Borrelia sp. SV1] gi|225371234|gb|EEH00664.1| DNA polymerase III, beta subunit [Borrelia sp. SV1] Length = 385 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 54/218 (24%), Positives = 115/218 (52%), Gaps = 13/218 (5%) Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 +E+Y + E+ K ++ R F+ +E + LNG++F +ED KL V+T+GHR++ Sbjct: 138 DEDYTFEIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLVSTNGHRMS 196 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 + + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ ++ LI Sbjct: 197 ICKTEVMVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDNYKIACSLI 253 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 +G +P+Y+++IP + V+ L+ + RV++ ++ KL L+ +L + + Sbjct: 254 NGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSELQLKLLGE 310 Query: 303 DM--GKA----IESMNVYYNECPMDICFNYKYLLEIID 334 D+ G+ I+ N Y+ + N Y +E I+ Sbjct: 311 DLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAIN 348 >gi|308182656|ref|YP_003926783.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4] gi|308064841|gb|ADO06733.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4] Length = 374 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N+E L V TD Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQEHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSS----TIKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|262066101|ref|ZP_06025713.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291380196|gb|EFE87714.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 381 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 98/408 (24%), Positives = 184/408 (45%), Gaps = 52/408 (12%) Query: 1 MKITVERSDILELLGHACRIIERK---NTI-PVSCHVLLQANDGLLEIKASGPEIEITGA 56 M I V R + L A R +E+ N I P+ V + D ++ +G ++ T Sbjct: 1 MHIKVNRQNFL----TAVRTVEKSIKDNLIKPILSCVYAKVKDN--KVYFTGTNLDTT-- 52 Query: 57 IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 I S+DV G + A ++ + +++++D + E G + I DS Sbjct: 53 IKTSIDVNEVIKEGEVAFRASIIDEYLKEIKDEFVVL---RVENGNILFIETEDSTTEYD 109 Query: 112 SFPESEFPSTKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F ++PST E E + FE+ S L + E+ F+ T + +N I N + Sbjct: 110 VFTTEDYPSTFEYINLNENNFKFEMPSQELVEIFEKVLFSADTPD-NIAMNCIRIESNNK 168 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSES 226 L V+T+ +RL + D+ +I ++ VP A+ +++I+ D+ +K+ + Sbjct: 169 TLNF--VSTNTYRLTYLKKDVENEINDF-AVSVPADAISSVVKIVKGLDNELIKIYKEGA 225 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ + ++ +LI+ FPNY +++ + DK+L +N + RV I S +++ Sbjct: 226 HLYFKYKETTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMES 285 Query: 286 VKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 S KL ++ N D+ + E +N+ + + I N KYLLE I NI Sbjct: 286 KYSSTYQFKHSDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIP 344 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ E++ +NS+V + KDK+ + Y+LMP+ + Sbjct: 345 KEK----ELILEFMYANSAVKVYEKDKE---------DYIYILMPLAL 379 >gi|260654350|ref|ZP_05859840.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1] gi|260630983|gb|EEX49177.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1] Length = 361 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 9/243 (3%) Query: 104 GDSNFYLQSFPESEFPSTKEEEYVYSFELASS--VLKNLVERTHFAMATEEIRYYLNGIF 161 G + + + FP FP F L S +++ L E +EE Y+ Sbjct: 86 GKNQYDVAVFPTDLFPDMPRPSSDEPFALVPSGELIRVLDEGIVAGSVSEEFPRYIGACQ 145 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSV 219 + +L+ AV+TDG RL++++ + + S++VP + E R L S D++V Sbjct: 146 LQCQKGELR--AVSTDGRRLSLSKC--LCESGTDGSVLVPLAPMKEFQRFLQSVESDATV 201 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +V ++ +H + L SVR I+ FPNY+ V+ L VN A++RV ++ Sbjct: 202 RVFTDQALVHFCLPGLEYSVRRIESSFPNYEKVLRKDFTSTLTVNRGLFIGALERVDLLV 261 Query: 280 SVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 V ++LS S ++ + +P++GKA E ++ + FN Y+L+ + Sbjct: 262 RENNHLVVVTLSPSGEMTLVGRSPEVGKACEHLSGMITGESLKAAFNANYMLDGLRAFHG 321 Query: 339 DEV 341 DEV Sbjct: 322 DEV 324 >gi|1706498|sp|P52620|DPO3B_VIBHA RecName: Full=DNA polymerase III subunit beta gi|1006570|gb|AAA78258.1| DNA polymerase III holoenzyme beta subunit [Vibrio harveyi] Length = 145 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFA 147 + ++ + L S L+ L+E+T F+ Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFS 145 >gi|317177661|dbj|BAJ55450.1| DNA polymerase III subunit beta [Helicobacter pylori F16] Length = 374 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|260588816|ref|ZP_05854729.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583] gi|260540595|gb|EEX21164.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583] Length = 370 Score = 78.2 bits (191), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 79/393 (20%), Positives = 180/393 (45%), Gaps = 40/393 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + + + + K T+P+ +L+ A+ ++ ++ E+ I + Sbjct: 1 MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A + +IVRKL D ++ + +L + N P Sbjct: 61 VLEKGIIALDAKIFSEIVRKLPDN-DVTIETDEKLNATITCEKAKFN----------IPG 109 Query: 121 TKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E++ Y ++ LK ++ +T F++A E + G F I E+ L Sbjct: 110 KSGEDFSYLPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLR 167 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLN 231 ++ DGHR+++ ++ + + + ++VP K + EI +ILS + + V++ LS + I Sbjct: 168 VISLDGHRISIRKIGL-KENCEDRKVVVPGKTLNEISKILSGELEDMVEIYLSANHILFE 226 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSL 290 + + RLI+GE+ ++ + ++++N +DR +++ + + +++ Sbjct: 227 FDDTKVVSRLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINI 286 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + ++ + +D+ +G E +++ + I FN K+L++ + I D+EV L Sbjct: 287 QNGQMELRIDS-QIGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYL 340 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + FIR D+ Y+++P+ Sbjct: 341 MNAKAPCFIR----------DDNQQYIYLILPV 363 >gi|317012318|gb|ADU82926.1| DNA polymerase III subunit beta [Helicobacter pylori Lithuania75] Length = 374 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ V+ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|310779069|ref|YP_003967402.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] gi|309748392|gb|ADO83054.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] Length = 371 Score = 77.8 bits (190), Expect = 2e-12, Method: Compositional matrix adjust. Identities = 96/390 (24%), Positives = 172/390 (44%), Gaps = 30/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M I V+R + L+ L + I P+ SC L DG + ++ + E+ IT + Sbjct: 1 MNIKVDRQEFLKTLRVVEKAIAENKIRPIISCVYLEAQEDGKIVLRGTNLELTITSFMEG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G S L+ + ++++ D KE L E S S F + PE E+P Sbjct: 61 EVQEKGKAVFSYQLVEEYLKEITDKEINLVVKEGLLIIET--SDSSSEFSVME-PE-EYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 K+ + L ++E+T F +T +N + I ED K+ VATD + Sbjct: 117 RIKDSIEGTGIVFSREKLSEMLEKTKFGASTSIDNLSINCVRIEI--EDKKVKVVATDTY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMS 238 RL E DI + + +P V +++ L + D +V+ E+++ + + + Sbjct: 175 RLVYLEDDI--EYDGSLKVSIPLTTVDALIKTLRTLDEENVEFKFEENQVFFKVGNSMVL 232 Query: 239 VRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSD 293 R+ID FP+Y ++ S++K++ N + + RV I S + A+ SL + Sbjct: 233 SRVIDLPFPDYNGIMKSVSHNKKISANTEEFSKILKRVQIFVKNNSESKYSAI-FSLEAG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + K E + V + I N K+LL+ I ++ +D ++ L +S Sbjct: 292 SFYVS-GVSETAKVNEHIEVEQEGEDVKISLNVKFLLDFIQHLDK----NDRLIIDLLTS 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 NS++ + KN+KD K Y+ MP+ Sbjct: 347 NSAIQL-------KNSKDEKY--LYIAMPL 367 >gi|294783008|ref|ZP_06748332.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294479886|gb|EFG27663.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 381 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 97/406 (23%), Positives = 183/406 (45%), Gaps = 52/406 (12%) Query: 1 MKITVERSDILELLGHACRIIERK---NTI-PVSCHVLLQANDGLLEIKASGPEIEITGA 56 M I V R + L A RI+E+ N I P+ V + D ++ +G ++ T Sbjct: 1 MHIKVNRQNFL----TAVRIVEKSIKDNKIKPILSCVYAKVKDN--KVYFTGTNLDTT-- 52 Query: 57 IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 I S+DV G + S ++ + +++++D + E G + I DS Sbjct: 53 IKTSIDVNEVIREGEVAFSPSIIDEYLKEIKDEFVVL---RVENGNILFIETEDSTTEYD 109 Query: 112 SFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F ++P+T E E + FE+ S L + E+ F+ T + +N I N + Sbjct: 110 VFTTEDYPNTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPD-NIAMNCIRIESNNK 168 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSES 226 L V+T+ +RL + D+ +I ++ +P + I++I+ D+ +K+ ++ Sbjct: 169 TLNF--VSTNTYRLTYLKKDVEKEINNF-AVSIPADTISSIVKIVKGLDNELIKIYKEDA 225 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ + ++ +LI+ FPNY +++ + DK+L +N + RV I S +++ Sbjct: 226 HLYFKYKETTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMES 285 Query: 286 VKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 S KL ++ N D+ + E +N+ + + I N KYLLE I NI Sbjct: 286 KYSSTYQFKHGINEESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIP 344 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ E+V +NS+V + KD + + Y+LMP+ Sbjct: 345 KEK----ELVLEFMYANSAVKVYEKDNE---------DYIYILMPL 377 >gi|297379695|gb|ADI34582.1| DNA polymerase III, beta subunit [Helicobacter pylori v225d] Length = 374 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ L I S+F L F EFP Sbjct: 61 SSDEEGVGTINGKKFLDIISCLKDSSITLETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|29829904|ref|NP_824538.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680] gi|29607013|dbj|BAC71073.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis MA-4680] Length = 376 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 20/350 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ VER E +G A R + ++ +PV +LL A+ G L + SG + E I Sbjct: 1 MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSV--SGFDFEAAARIGTD 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G + V L DI R L DG +S E GT + G + F L + P E+ Sbjct: 59 AETVAEGQVLVLGRRLLDICRVLPDG-PVSCVLE---GTRFTVEAGGTRFGLSTLPREEY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ Y + + + V + A ++ L G+ ++ + + L A+D Sbjct: 115 PALPVPPEPYG-SVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTLA--ASDR 171 Query: 179 HRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL-NIESL 235 +R AV + + A + ++P + + +I R L ++ V++ + L E Sbjct: 172 YRYAVRTLGWQPEAAADGVVEALLPARRLLDIARSL-ARSGDVRIGFDRAAGGLIGFEGG 230 Query: 236 SMS--VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS- 292 M VRL++G P Y ++ + V C L +AV RV++++ V+L S+ Sbjct: 231 RMRTVVRLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVAEAN-SPVRLDFSAP 289 Query: 293 -DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 + + D A V + FN YLL+ +++ + V Sbjct: 290 DGTVLLGAGYGDDVAAQRLPAVLSGAEEVTAAFNPGYLLDALNSFEAPRV 339 >gi|227549438|ref|ZP_03979487.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227078515|gb|EEI16478.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 406 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 91/406 (22%), Positives = 176/406 (43%), Gaps = 47/406 (11%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + + R + KNT PV +++ A+D LE E+ I A V Sbjct: 21 VHKEDLSDAVAWVARSLPTKNTQPVLRAIVITADDSGLEFAGFDYEVSSRVRIGAEVSQP 80 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESEFPST 121 G + V+ L+ DIV + K E+ G+++ + G + F L P ++P Sbjct: 81 GRVAVAGKLMADIVANMP-------AKPMEVSTDGSKMLLQGGSARFELPLMPLDDYPQL 133 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V ++ S V + A ++ L G+ I+ L+L ATD RL Sbjct: 134 PTLPEVTG-RISPSAFVGAVTQVASAAGRDDTLPMLTGVHMEISGNALQLT--ATDRFRL 190 Query: 182 AV-------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SES 226 A+ A D+ A+ ++VP K + + R L + + V++++ + Sbjct: 191 AIRRLQWEPASDDVEAK------LLVPAKTLLDNARTLDTHVEEPVEIAVGAAGNVGGDG 244 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 L+ + + R++D +FPN Q ++P ++ V L +A+ RVS+++ Q V Sbjct: 245 LFGLHSGNRETTTRMLDADFPNIQPLLPKTHTSMASVEIAPLVEAIRRVSLVADRNAQ-V 303 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDE 345 ++ ++ + D G+A E++ ++ + I FN YL + + I + + Sbjct: 304 RMHFHPGEVTLHASGADSGEASETVAAAFSGADELLIAFNSGYLKDGLAVIGT-----NR 358 Query: 346 VVFRL-DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 VVF ++S ++ I ++ + D + Y+LMP+R+ Sbjct: 359 VVFGFTEASRPAIMIPEPEQLPEAEADGTFPTPATDFTYLLMPVRL 404 >gi|237739903|ref|ZP_04570384.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] gi|229423511|gb|EEO38558.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] Length = 381 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 98/406 (24%), Positives = 183/406 (45%), Gaps = 52/406 (12%) Query: 1 MKITVERSDILELLGHACRIIERK---NTI-PVSCHVLLQANDGLLEIKASGPEIEITGA 56 M I V R + L A RI+E+ N I P+ V + D ++ +G ++ T Sbjct: 1 MHIKVNRQNFL----TAVRIVEKSIKDNKIKPILSCVYAKVKDN--KVYFTGTNLDTT-- 52 Query: 57 IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 I S+DV G + S ++ + +++++D + E G + I DS Sbjct: 53 IKTSIDVNEVIREGEVAFSPSIIDEYLKEIKDEFVVL---RVENGNILFIETEDSTTEYD 109 Query: 112 SFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F ++P+T E E + FE+ S L + E+ F+ T + +N I N + Sbjct: 110 VFTTEDYPNTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPD-NIAMNCIRIESNNK 168 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSES 226 L V+T+ +RL + D+ +I ++ VP + I++I+ D+ +K+ ++ Sbjct: 169 TLNF--VSTNTYRLTYLKKDVEKEINDF-AVSVPADTISSIVKIVKGLDNELIKIYKEDA 225 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ + ++ +LI+ FPNY +++ + DK+L +N + RV I S +++ Sbjct: 226 HLYFKYKETTIITKLIELRFPNYVDILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMES 285 Query: 286 VKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 S KL ++ N D+ + E +N+ + + I N KYLLE I NI Sbjct: 286 KYSSTYQFKHGDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIP 344 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ E+V +NS+V + KD + + Y+LMP+ Sbjct: 345 KEK----ELVLEFMYANSAVKVYEKDNE---------DYIYILMPL 377 >gi|195953462|ref|YP_002121752.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933074|gb|ACG57774.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1] Length = 398 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 94/374 (25%), Positives = 176/374 (47%), Gaps = 34/374 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPAS 60 + ++ + +++ A E K+ +P+ + L++ + +KA+ E I+I G P Sbjct: 10 VVFDKKEFDDIISKAKNTTESKSILPILSNFLIEIENSKYFVKATDLENYIKIEGR-PEQ 68 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117 +V ++ +++ L DIV+ L A + N+ + V I G S F L SE Sbjct: 69 SEVSCTLCINSKKLSDIVKSLS-SATFTLTLVNDPSAQSSYVQIQSGRSKFKLTLAEASE 127 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCA-- 173 FP+ E E + S + +L +ERT +A+A E+ + L G+ + D K Sbjct: 128 FPAFPEIENDMISNNIPGFMLLEGLERTDYAVAKEDAMNPTLTGVNMIFDNNDGKSFVEF 187 Query: 174 VATDGHRLAV-------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 ATDG+RL V E + ++ M S +PRK V +IL+ +++K S V + Sbjct: 188 AATDGNRLTVFKKYYPKDESNENITLSNM-SFTIPRKTV-KILKSITNKASFVNIYYKSG 245 Query: 227 RIHLNIESLSMSV----RLIDGEFPNYQNVIPCSNDKEL--RVNCTNLRQAVDRVSIMSS 280 L E +M RL++GEFP+Y+ I + D+ L ++ +LR + R+S + Sbjct: 246 SSFLIFEDKAMGCTLFSRLLEGEFPDYKTYIE-NIDRPLNAKIQRKDLRDLIRRLSFSAD 304 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID------ 334 + +KL+ + + L + + + + +++ Y + N +YL E +D Sbjct: 305 GTVIPIKLTFADNILIGETSDRESTEGRDEIDIDYVGEAFSVDLNARYLKESVDYAPCDY 364 Query: 335 -NISSDEVVDDEVV 347 NIS+D+ ++ +V Sbjct: 365 INISTDDPMNGMLV 378 >gi|225028837|ref|ZP_03718029.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353] gi|224953833|gb|EEG35042.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353] Length = 370 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/388 (21%), Positives = 178/388 (45%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT ++ L + + + K T+ + +L++A D +++ A+ E+ I I + Sbjct: 1 MKITCSKNQFLYGVNTVSKAVSNKTTMDILQCILIEAYDDCIKLTANDTELGIETVIEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +I++K+ D E + + NI + +F Sbjct: 61 IIEPGKIALEAKIFSEIIKKIPDN---DVCIETDESGKTNIECEQIQCSIMGRKGDDFSH 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L+ LK ++ +T F+++ E + G I E+ K+ + DGHR Sbjct: 118 LPEIEKENKITLSQFDLKEVIRQTIFSVSDNENNKLMTGELLSI--ENNKMTVTSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLSMS 238 ++V +++ KM +IVP K + E+ +IL +KD ++ + L++ I + Sbjct: 176 ISVRNIELQESYPKM-EVIVPGKTLSEVSKILPGEAKD-TINLYLTDKHILFEFGETKVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-MSSVRIQAVKLSLSSDKLCM 297 RL++G+F N ++ + +L +N L + +DR ++ + + + L + ++++ + Sbjct: 234 SRLLEGKFYNIGQMLSNDYETKLTINKMELLRCLDRSTLFVKESDKKPIILKIENEQMNL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + +G + + + + I FN K+L++ + I ++EV L +S + Sbjct: 294 MI-SSQIGSMKDQIAISKEGKDLVIGFNPKFLVDALRVID-----EEEVTIYLINSIAPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D K + Y+++P+ + Sbjct: 348 IIR----------DEKSSYLYLILPINV 365 >gi|260891932|ref|YP_003238029.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] gi|260864073|gb|ACX51179.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] Length = 372 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 72/341 (21%), Positives = 153/341 (44%), Gaps = 17/341 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ T+ + D+ +L R I K ++P +L + L A+ ++++T +P Sbjct: 1 MQFTISQEDLERVLSVCLRCIPSKPSMPQLAGILFRKEGSKLTATATDLDVQVTVELPRV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G + + A +D+VR+L + + + +V +S+ L EFP Sbjct: 61 NLEEEGELWLPAKETFDLVRRLPEDVLVELRQAG--SNQVLLSYPGGEARLAGMDPGEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E+ E L + + +A A +++R G+ + + +L ATDGH Sbjct: 119 LI-EQSVEEVLEFPGEGLLDALRYVLYAAAPDDLRPIFTGVEISYSSPEGELTFAATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEIL---RILSSKDSSVKVSLSESRIHLNIESLS 236 RLAV + ++ S +VP + + E+L R+L + +++ + + H E + Sbjct: 178 RLAVFR---RGEEPRLESRVVPAQYLKEVLVLGRLLGEEPKRIRLGKTTASFHW--EEVE 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSS 292 + RLI+G+FP++Q +P L + L ++R +++ + + AV L Sbjct: 233 LYSRLIEGKFPDWQQALPKDPPATSLSLTVGTLLSCLERARVIARAQASGVPAVFLVKEG 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 + + + + + G+ E ++ + + FN YL+E + Sbjct: 293 EGVRIEARS-EAGEFKEHVDGRAEGEDLTLAFNADYLMEAL 332 >gi|319654119|ref|ZP_08008209.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] gi|317394204|gb|EFV74952.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] Length = 369 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 9/207 (4%) Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVN-ISHGDSNFYLQSFPESEFPSTKEEEYV 127 V A L D+++KL G + ++ + V S+G S + FP+ P EE + Sbjct: 72 VPAKLFLDMMKKLPKGEVVIIVEDKNVIILVGKSSYGISTLAIDEFPK---PVAYEEGKI 128 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 + E ++L H A + E R L G+ HI L +ATD HRL V Sbjct: 129 FQVE-GPEFAQSLSAMIH-ACSDSETRPILTGV--HIVSNGKYLTLIATDSHRLMATAVP 184 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 I+ + + +++VP+ ++ E+ +L+ + V+ S+S++++ L + + + RL++G FP Sbjct: 185 ILKETEEFKNVVVPKTSIKELTTLLTD-EKEVEFSISDNQLSLKTDGVLFTTRLLEGSFP 243 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDR 274 + +IP + + E+ V+ +A+DR Sbjct: 244 DVTKLIPTTYESEVVVHREEFLKALDR 270 >gi|218887172|ref|YP_002436493.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758126|gb|ACL09025.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 388 Score = 77.8 bits (190), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 92/406 (22%), Positives = 177/406 (43%), Gaps = 50/406 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ D++E L A II K + L+A +G L + A+ IE GA A Sbjct: 1 MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 ++ G V D++RKL G QI+ + E G + I G + + Q+ Sbjct: 61 IEQPGLAGVQGRAFVDLLRKLP-GGQITLKLDGESGN-LLIEQGRRKYKLPVNDSVWFQN 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F SEFP+ S + L+ L++R F ++ E+ + + ++ + Sbjct: 119 F--SEFPADG------SVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQN-AIE 169 Query: 173 AVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 A +GH+ A+ +A +P I++ +K +GE+ + L + + V++++SE R+H Sbjct: 170 ACGLNGHQFAMLRFTHDELMAMLPPEGILIQKKYLGELKKWLGTDE--VELNISEKRLHF 227 Query: 231 NI----ESLSMSVRLIDGEFPNYQNVIP-CSND--KELRVNCTNLRQAVDRVSIMSSVRI 283 E+ S+ + ++P+Y N + S D L + + A+DR+ I ++ Sbjct: 228 RTGDGKETFSLPLSYY--QYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSN 285 Query: 284 QAVKL----SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + + + ++ D+G A E++ Y+ I F + L+EI+ + S Sbjct: 286 RCTYFDLDGNGGGGDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRS- 344 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + L S + G D DS+ ++MPM+I Sbjct: 345 ----ERLGLTLTGSEGPCGLTGSD-DSEYT--------VIIMPMKI 377 >gi|158317615|ref|YP_001510123.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] gi|158113020|gb|ABW15217.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] Length = 404 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 82/366 (22%), Positives = 159/366 (43%), Gaps = 44/366 (12%) Query: 36 QANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 QA L + A E+ + A V G + V LL D+VR L D + E Sbjct: 62 QAPGPALTVSAFDSEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVVVEATE--- 118 Query: 96 GTEVNISHGDSNFYLQSFPESE------FPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 T V I G + F + + + FP E F A + + R Sbjct: 119 -TRVIIECGAARFRIPALAAEDYPVLPAFPPPVGEVDTLGFAAAVAQVAPAAGR------ 171 Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII-VPRKAVGEI 208 ++ L + I L + VATD +RLAV + + + ++ VP + + ++ Sbjct: 172 -DDALPVLTAVRLEIARGGLTM--VATDRYRLAVRTIPWQPTVDEPDAVAHVPARLLADM 228 Query: 209 LRILSSKDS-SVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 ++ ++ ++ + + E+ R L++ VRL++G FPNY+ ++P +++ + Sbjct: 229 AKLPTTASRVALGMGVDEAGVLRFGLSVNGRQTIVRLLEGSFPNYRRLLPETSELTVTAP 288 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 L AV RV+++++ R ++ + S+ ++ + +A E + V Y+ + + F Sbjct: 289 TAVLAAAVRRVALVAT-RTAPLRFTFSAGQVVAEAGDGGGAQASELVPVEYDGPELSVLF 347 Query: 325 NYKYLLEIIDNISSDEVV------DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY 378 N +LL+ + + DE + D E+ +S+ + GKD + +D + Y Sbjct: 348 NPAFLLDGLAAVEGDEAIIGFATADPEI-----ASSKPAVLTGKD----DGEDYR----Y 394 Query: 379 VLMPMR 384 +LMP+R Sbjct: 395 LLMPIR 400 >gi|315635402|ref|ZP_07890668.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri JV22] gi|315480160|gb|EFU70827.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri JV22] Length = 356 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 126/257 (49%), Gaps = 12/257 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + ++ +E+K++ ++ H+ L+ N+ L IKA+ EI + I Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V G TV+ L I+++L++ I N L I S F L ++ +EFP Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNNLV----IKQNKSTFKLPTYDANEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + +++ N + + A+ ++ LNG I + K+ V+TD Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQ--KINFVSTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ ++ + +I+P+KA+ EI ++ + K+S + + ++ + Sbjct: 175 RLALSFLENMNN--DEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229 Query: 240 RLIDGEFPNYQNVIPCS 256 +LI+G+FP+Y+ +IP + Sbjct: 230 KLINGKFPDYERIIPSN 246 >gi|297570615|ref|YP_003696389.1| DNA polymerase III subunit beta [Arcanobacterium haemolyticum DSM 20595] gi|296930962|gb|ADH91770.1| DNA polymerase III, beta subunit [Arcanobacterium haemolyticum DSM 20595] Length = 372 Score = 77.4 bits (189), Expect = 3e-12, Method: Compositional matrix adjust. Identities = 93/390 (23%), Positives = 182/390 (46%), Gaps = 29/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MKI VE E + R I + IPV + +QA+ +G++ + + +I I A Sbjct: 1 MKIIVEHDVFTEAVTWVARTIPNRPAIPVLAGLKIQASQNGIVSLGSRDSDISSHVDIEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116 V G + V+ LL DI R L K EL GT+++I G S+F +++ Sbjct: 61 DVLNAGDVLVNGRLLADICRALPR-------KPIELTLDGTKLDIECGSSHFSMKTMASE 113 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++ + V S+ L+ + + T A + ++ L + IN + + L +AT Sbjct: 114 DYTDGTDMPPVIGTVDGSAWLEAISQVT-IAASNDDTLPLLVSVCLEINGDSIAL--MAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESL 235 D +RLAV +++ + I+ R + + +I + L S +++SLS+S I Sbjct: 171 DRYRLAVRDLEWTPTDTTISKRILVRASRLLDIAKALGSA-GPIEISLSDSLIGFAAGGK 229 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +V+LIDGE+P ++ P + + +N ++ A+ R ++ + AV+LS + ++ Sbjct: 230 QNTVQLIDGEYPQVLSLFPAESAGYMVMNRADMLDAIKRSRLVVE-KNAAVRLSFTEGEV 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN- 354 + D +A E++ + + FN +L E ++ ++V RL ++ Sbjct: 289 TIEAGQGDQAQASEALPADVVGEDVKMAFNPIFLQEGFSAMNCEKV-------RLSVTHP 341 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + +KD ++ +D ++ +LMP+R Sbjct: 342 TKPAVMTAEKDGESVEDFRL----LLMPVR 367 >gi|331083520|ref|ZP_08332632.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|330404213|gb|EGG83761.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 405 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 79/393 (20%), Positives = 180/393 (45%), Gaps = 40/393 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + + + + K T+P+ +L+ A+ ++ ++ E+ I + Sbjct: 36 MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 95 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A + +IVRKL D ++ + +L + N P Sbjct: 96 VLEKGIIALDAKIFSEIVRKLPDN-DVTIETDEKLNATITCEKAKFN----------IPG 144 Query: 121 TKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E++ Y ++ LK ++ +T F++A E + G F I E+ L Sbjct: 145 KSGEDFSYLPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLR 202 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLN 231 ++ DGHR+++ ++ + + + ++VP K + EI +ILS + + V++ LS + I Sbjct: 203 VISLDGHRISIRKIGL-KENCEDRKVVVPGKTLNEISKILSGELEDMVEIYLSANHILFE 261 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSL 290 + + RLI+GE+ ++ + ++++N +DR +++ + + +++ Sbjct: 262 FDDTKVVSRLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINI 321 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + ++ + +D+ +G E +++ + I FN K+L++ + I D+EV L Sbjct: 322 QNGQMELRIDS-QIGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYL 375 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + FIR D+ Y+++P+ Sbjct: 376 MNAKAPCFIR----------DDNQQYIYLILPV 398 >gi|219684428|ref|ZP_03539372.1| DNA polymerase III, beta subunit [Borrelia garinii PBr] gi|219672417|gb|EED29470.1| DNA polymerase III, beta subunit [Borrelia garinii PBr] Length = 386 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 55/216 (25%), Positives = 113/216 (52%), Gaps = 13/216 (6%) Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E+Y + EL K ++ R F+ +E + LNG+FF ED +L V+T+GHR+++ Sbjct: 140 EDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGVFF-TKGEDSQLLLVSTNGHRMSI 198 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + +++ + + + IVP K + L+ L S + VK+ S+ + ++ ++ ++ LI Sbjct: 199 CKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYVEFDNYKIACSLIS 255 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 G +P+Y+++IP + + V+ + L+ + RV++ ++ KL L+ +L + + D Sbjct: 256 GNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYVD---KSKKLILTFSELQLKLLGED 312 Query: 304 M--GKA----IESMNVYYNECPMDICFNYKYLLEII 333 + G+ I++ N Y + N Y +E I Sbjct: 313 LITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAI 348 >gi|218134377|ref|ZP_03463181.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC 43243] gi|217989762|gb|EEC55773.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC 43243] Length = 284 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 63/279 (22%), Positives = 132/279 (47%), Gaps = 7/279 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + + + I + ++P+ +++ + +G ++ A+ E+ I + Sbjct: 1 MKLVFSKSELSKGVNIVSKAIPTRTSMPILECIMIDSTEGQIKFTANDMELGIETIVEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + DIVRKL D I+ ++ + + N +S + F Sbjct: 61 ILEKGKIAIDAKIFSDIVRKLPDN-DITIQTDDNYNALITCENSKFNISGKSGDDFSFLP 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E++ S L+ L+ LV +T F A + + G F + + +LK+ VA DGHR Sbjct: 120 VIEKQ--KSIRLSQFALRELVNQTIFCTAPNDNNKMMAGELFEVIDSELKV--VALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A+ + + + A ++VP K + EI +ILS+ D + + S + I + + Sbjct: 176 IAIRKKKLEGR-ADDVKVVVPGKTLNEISKILSTDADDMMNIYFSNNHILFEFDQTIVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 RLI+GE+ ++ + + N + ++DR +++ Sbjct: 235 RLIEGEYFKISQMLSSDYETRITANKKEMLGSIDRATLL 273 >gi|284988631|ref|YP_003407185.1| DNA polymerase III subunit beta [Geodermatophilus obscurus DSM 43160] gi|284061876|gb|ADB72814.1| DNA polymerase III, beta subunit [Geodermatophilus obscurus DSM 43160] Length = 386 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 23/396 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + ++PV +LL+ + L + SG + E++ A Sbjct: 1 MKFRVAREVLADAVAWTARSLPPRPSVPVLAGILLEVDGSQLSV--SGFDYEVSAR--AE 56 Query: 61 VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 VDV G + V LL +I R L + E G ++IS G++ F L + P Sbjct: 57 VDVQATESGRVLVPGRLLAEITRALPP-HPVDLTAE---GPRLSISCGNARFSLPTLPVE 112 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++PS + S V V + A ++ L G+ I E+DL A AT Sbjct: 113 DYPSLPAMPSSAGV-VDSDVFAEAVGQVAVAAGRDDTLPMLTGVRLEI-EDDLVTLA-AT 169 Query: 177 DGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKD----SSVKVSLSESRIHLN 231 D +RLAV E + + ++VP + + + + L+S S S E + L+ Sbjct: 170 DRYRLAVREFAWRPDTPGLTTAVLVPARTLADAAKTLTSGPEITLSLSSGSSGEGILGLS 229 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+D EF Y+ ++P + + A RV++++ R ++ + Sbjct: 230 GKDRQTTTRLLDAEFVKYRAIMPNESASNATLPVGLFTDAAKRVALVAE-RGTPLRCEFT 288 Query: 292 SDKLCMTVDNP-DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + D G+A E +V + P+ I FN +LL+ + + + D Sbjct: 289 PGQVTLRAGGTDDEGQAEERCDVEFEGEPLTIGFNPTFLLDGLAAVHTPRARMDFTSPLK 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 + S V D ++ + + ++ Y++MP+R+ Sbjct: 349 PAVLSGVPEPATDDEAASRPAERPGSYRYLIMPVRL 384 >gi|227506186|ref|ZP_03936235.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC 6940] gi|227197210|gb|EEI77258.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC 6940] Length = 393 Score = 77.4 bits (189), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 91/400 (22%), Positives = 176/400 (44%), Gaps = 36/400 (9%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K T PV +L+ A+D LE E+ I A VD Sbjct: 9 VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAAMVDEP 68 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELG---TEVNISHGDSNFYLQSFPESEFPST 121 G I V+ LL DIV L + KE E+ ++V ++ G S F L P ++P Sbjct: 69 GRIAVAGKLLADIVASLPN-------KEVEMTQQDSKVLLTCGSSRFELPVIPLDDYPQL 121 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + + + + A ++ L G+ I+ +++ ATD RL Sbjct: 122 PVLPEVTG-TVNPQLFVEAISQVASAAGKDDTLPMLTGVHMEIHGSHVEMT--ATDRFRL 178 Query: 182 AVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNI 232 A+ + + + ++VP K + + R L + + V++++ +E L+ Sbjct: 179 AMRTFEWEPTSPDVEAKLLVPAKTLQDTGRSLDTHLNIPVEIAVGTGENIGAEGLFGLHA 238 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ + R++D +FPN ++P ++ + L++A+ RVS+++ Q +++ S Sbjct: 239 DNRETTTRMLDADFPNVSPLLPKTHTAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFSE 297 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL- 350 ++ + D GKA E++ + I FN YL + + + + D VVF Sbjct: 298 GQVTLAA-GADSGKADETLPCAFTGRDEFVIAFNPSYLKDGLAVVHT-----DRVVFGFT 351 Query: 351 DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + S ++ I ++ ++D + N Y+LMP+R+ Sbjct: 352 EPSRPAIMIPEPEEMPLADEDGVFPTPETNFTYLLMPVRL 391 >gi|157736273|ref|YP_001488956.1| DNA polymerase III subunit beta [Arcobacter butzleri RM4018] gi|157698127|gb|ABV66287.1| DNA polymerase III, beta subunit [Arcobacter butzleri RM4018] Length = 356 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 61/257 (23%), Positives = 126/257 (49%), Gaps = 12/257 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + ++ +E+K++ ++ H+ L+ N+ L IKA+ EI + I Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V G TV+ L I+++L++ I N L I S F L ++ +EFP Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNNLV----IKQNKSTFKLPTYDANEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + +++ N + + A+ ++ LNG I + K+ V+TD Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQ--KINFVSTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ ++ + +I+P+KA+ EI ++ + K+S + + ++ + Sbjct: 175 RLALSFLENMNN--DEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229 Query: 240 RLIDGEFPNYQNVIPCS 256 +LI+G+FP+Y+ +IP + Sbjct: 230 KLINGKFPDYERIIPSN 246 >gi|317013918|gb|ADU81354.1| DNA polymerase III subunit beta [Helicobacter pylori Gambia94/24] Length = 374 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIDPKVSLEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -AFFTKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|307699829|ref|ZP_07636880.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16] gi|307614867|gb|EFN94085.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16] Length = 381 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 86/394 (21%), Positives = 176/394 (44%), Gaps = 26/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M++ + R + E + + R I ++ +PV V + A +E + + + P Sbjct: 1 MELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G++ V LL + R L + +++SF E+ ++I+ G + L PE ++ Sbjct: 61 ELITEGTVVVDGKLLSETARALPNKISEVSFKTEDNY---LHITCGSFHQQLLVMPEEDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + V ++ + V + + + A + +E L GI I E KLC +ATD Sbjct: 118 PQLPQLPQVVG-QVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDR 174 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +R+A+ E+ A ++ ++V K + + + ++S S+ +++ + LS Sbjct: 175 YRMALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSA 233 Query: 238 SVRLI-----DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 RL DG +P+ + + P + V ++ A RV+I+S+ + Q + LS + Sbjct: 234 GGRLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFT 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + A +++ V N + + FN + L+E + VVD+ V Sbjct: 294 QGTLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLS------VVDEPYVRLSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ +++ D+ ++ Y++MP+R Sbjct: 348 KDETKPVIITGQKEET---GDDSLDFQYLIMPIR 378 >gi|25026559|ref|NP_736613.1| DNA polymerase III subunit beta [Corynebacterium efficiens YS-314] gi|259508309|ref|ZP_05751209.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314] gi|23491838|dbj|BAC16813.1| putative DNA polymerase III beta subunit [Corynebacterium efficiens YS-314] gi|259164127|gb|EEW48681.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314] Length = 394 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 19/348 (5%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V R D++ +G R + K T PV +L+ A+D LE+ E+ + A V V Sbjct: 10 VAREDLVTSVGWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYEVSTRVRVSAEVAVP 69 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE- 123 G I V+ +L +I+ L + + F + G++V +S G ++F L S P ++P Sbjct: 70 GRIAVAGKILSEIIGTLPN-KPVDFRLD---GSKVLVSCGSASFELPSIPLDDYPPLPSL 125 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E S + + V + A ++ L G+ I+ + L ATD RLA+ Sbjct: 126 PERTGS--INPKLFTEAVTQVASAAGRDDSLPMLTGVNMEIHGNQISLA--ATDRFRLAL 181 Query: 184 AEVDI-VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIES 234 + A +++P K + E R L + + + +++ E + ++ Sbjct: 182 RTFEWDPASSGIEAKLLIPAKTLLENARTLDTGLNEEIGIAVGTGEQVGREGLFGIRTDN 241 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + R++D +FPN Q ++P + V L AV RVS+++ Q + + S + Sbjct: 242 RESTTRMLDADFPNIQPLLPKEHTAIASVEIAPLLDAVRRVSLVADRNAQII-MEFSDGQ 300 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ D G A E + + + I FN YL + + I + V Sbjct: 301 VILSAGGSDAGHAQEVLPCAFTGKDLKIAFNPGYLKDGLSVIPTSRAV 348 >gi|262183096|ref|ZP_06042517.1| DNA polymerase III subunit beta [Corynebacterium aurimucosum ATCC 700975] Length = 393 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 38/401 (9%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 9 VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVDEP 68 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPESEFPST 121 G I V+ LL DIV L + KE E+ E N + G S F L P ++P Sbjct: 69 GRIAVAGKLLSDIVASLPN-------KEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQL 121 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + + + + A ++ L G+ IN +++ ATD RL Sbjct: 122 PVLPEVTG-TINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMT--ATDRFRL 178 Query: 182 AVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLN 231 A+ E + V+ + ++VP K + E R L + + V++++ +E L+ Sbjct: 179 AMRTFEWEPVSSDVQA-KLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLH 237 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ + R++D +FPN ++P ++ + L++A+ RVS+++ Q +++ S Sbjct: 238 ADNRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFS 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + D G+A E++ +N I FN YL + + + + + VVF Sbjct: 297 EGEVTLAA-GADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHT-----NRVVFGF 350 Query: 351 -DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + S ++ I ++ N+D + + Y+LMP+R+ Sbjct: 351 TEPSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 391 >gi|227831832|ref|YP_002833539.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC 700975] gi|227452848|gb|ACP31601.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC 700975] Length = 444 Score = 77.0 bits (188), Expect = 4e-12, Method: Compositional matrix adjust. Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 38/401 (9%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 60 VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVDEP 119 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPESEFPST 121 G I V+ LL DIV L + KE E+ E N + G S F L P ++P Sbjct: 120 GRIAVAGKLLSDIVASLPN-------KEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQL 172 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + + + + A ++ L G+ IN +++ ATD RL Sbjct: 173 PVLPEVTG-TINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMT--ATDRFRL 229 Query: 182 AVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLN 231 A+ E + V+ + ++VP K + E R L + + V++++ +E L+ Sbjct: 230 AMRTFEWEPVSSDVQA-KLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLH 288 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ + R++D +FPN ++P ++ + L++A+ RVS+++ Q +++ S Sbjct: 289 ADNRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFS 347 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + D G+A E++ +N I FN YL + + + + + VVF Sbjct: 348 EGEVTLAA-GADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHT-----NRVVFGF 401 Query: 351 -DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + S ++ I ++ N+D + + Y+LMP+R+ Sbjct: 402 TEPSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 442 >gi|15611519|ref|NP_223170.1| DNA polymerase III subunit beta [Helicobacter pylori J99] gi|11132657|sp|Q9ZLX4|DPO3B_HELPJ RecName: Full=DNA polymerase III subunit beta gi|4154988|gb|AAD06030.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99] Length = 374 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 80/352 (22%), Positives = 159/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L G+ N++ L V TD Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++ + S +SS +KL+L ++ Sbjct: 232 -AFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKEGIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|317009521|gb|ADU80101.1| DNA polymerase III subunit beta [Helicobacter pylori India7] Length = 374 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++++ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNTPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|160941460|ref|ZP_02088795.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC BAA-613] gi|158435606|gb|EDP13373.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC BAA-613] Length = 372 Score = 77.0 bits (188), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 88/394 (22%), Positives = 185/394 (46%), Gaps = 40/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ I+ + + + K T+ + +L+ A+ EIK +G ++E+ Sbjct: 1 MKLRFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTN--EIKLTGNDMELGIETRVE 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D+ G I + A L +I R+L + A ++ +++ T IS +S F +Q E Sbjct: 59 GDILEHGKIALDAKLFSEITRRLSSENASVTIESDDKFNT--TISCENSVFNIQGRDGEE 116 Query: 118 F---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 F P ++++Y+ L+ LK ++++T F+++ + + G F +NE LK+ V Sbjct: 117 FAYLPYIEKDKYIC---LSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--V 171 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIE 233 + DGHR+++ +V + +IVP K + E+ +IL + V + S + I + Sbjct: 172 SLDGHRISIRKVRLKDHYED-TKVIVPGKTLSEVSKILGGDNEKEVLIYFSTNHILFEFD 230 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSL 290 + + RLI+GE+ ++ + ++ VN ++R +I+ +R K +++ Sbjct: 231 NTIVVSRLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATIL--IRENDKKPLIINI 288 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FR 349 + + + + N G + ++ + I FN K+L++ + V+DDE + Sbjct: 289 GDNSMELKL-NSSFGSMNADLMIHKTGKDIMIGFNPKFLIDAL------RVIDDEEINIY 341 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + S FI KD + N Y+++P+ Sbjct: 342 MMNPKSPCFI----------KDEEENYIYLILPV 365 >gi|295129531|ref|YP_003580194.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137] gi|291376118|gb|ADD99972.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137] Length = 414 Score = 76.6 bits (187), Expect = 5e-12, Method: Compositional matrix adjust. Identities = 95/403 (23%), Positives = 177/403 (43%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 29 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 88 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G VS LL DI L + QI+ ++++ G + F LQ+ P E+P Sbjct: 89 VDEPGESLVSGKLLADIACSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 143 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +SV V + A +E+ G+ IN E L L +ATD + Sbjct: 144 DLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 200 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 R+A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 201 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 259 Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ Sbjct: 260 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 318 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEVVD 343 ++ D + ++ D +A E++ V N + FN YL + + + + Sbjct: 319 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 373 Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G D D K D + +V+M MR+ Sbjct: 374 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 412 >gi|148927259|ref|ZP_01810830.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1] gi|147887345|gb|EDK72798.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1] Length = 202 Score = 76.6 bits (187), Expect = 6e-12, Method: Compositional matrix adjust. Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 11/211 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + ++ + L R+ K +P+ ++LL+ ++ L + A+ EI IT I A Sbjct: 1 MKLTVTQENLTKALNGVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119 V G+ITV A L+ + + L G + E G ++I+ G + + EFP Sbjct: 61 VAKNGAITVPARLMAEFISNLPKG-NVELSVE---GAHLHIAAGAYSSTINGMEAEEFPE 116 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T E +E+ + V+K V +T +++ R +L G++ H E DL ATDG Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFA--ATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 +RL+ ++ + + K IVP + ++L Sbjct: 175 YRLSERKIGAMKEDLKA---IVPASTLQDVL 202 >gi|210134703|ref|YP_002301142.1| DNA polymerase III subunit beta [Helicobacter pylori P12] gi|210132671|gb|ACJ07662.1| DNA polymerase III beta subunit [Helicobacter pylori P12] Length = 374 Score = 76.3 bits (186), Expect = 7e-12, Method: Compositional matrix adjust. Identities = 88/395 (22%), Positives = 180/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L ++D+ A S+ + E + N K+ LE ++ + + + V R Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLRC 341 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S I+ + +++ + K++ ++MP+ + Sbjct: 342 NEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|109947376|ref|YP_664604.1| DNA polymerase III subunit beta [Helicobacter acinonychis str. Sheeba] gi|109714597|emb|CAJ99605.1| DNA polymerase III, beta chain [Helicobacter acinonychis str. Sheeba] Length = 374 Score = 76.3 bits (186), Expect = 8e-12, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 159/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D KE+ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNITLETKEDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L G+ ++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLENISVNSTEEYISCILPKRALLEILKLFYESFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P +N ++++ S +S +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYASSFTLNKEGFKESIKLSSSLSPT----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSIEIEKDLEIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|15645127|ref|NP_207297.1| DNA polymerase III subunit beta [Helicobacter pylori 26695] gi|3913505|sp|O25242|DPO3B_HELPY RecName: Full=DNA polymerase III subunit beta gi|2313610|gb|AAD07565.1| DNA polymerase III beta-subunit (dnaN) [Helicobacter pylori 26695] Length = 374 Score = 76.3 bits (186), Expect = 9e-12, Method: Compositional matrix adjust. Identities = 87/395 (22%), Positives = 181/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLA----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIDPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ +H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENEMH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L ++D+ A S+ + E + N K+ LE ++ + + + V R Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLRC 341 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S I+ + +++ + K++ ++MP+ + Sbjct: 342 NEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|307592396|ref|YP_003899987.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822] gi|306986041|gb|ADN17921.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822] Length = 497 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 82/363 (22%), Positives = 167/363 (46%), Gaps = 24/363 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGLLEIKASGPEIEITGAIP 58 ++I+ +++ +LE + I P+ +LL+ L++++ E + I Sbjct: 103 IQISTDKNALLEAIELVKAGISNNPAYPILGMILLELETEKQRLKLRSYNYEFGFSTEIE 162 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-----VNISHGDSNFY-LQS 112 A + GSI + A L Y I+RK G + + N+ T+ +++ NF+ ++ Sbjct: 163 AGITGKGSIALPAALFYAILRKFPMGECLLTLQTNDEATDEIVAKLSLKEQPDNFFEIRG 222 Query: 113 FPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI----N 165 P + E+P+ + F + L ++ + FA + EE + L G F + + Sbjct: 223 LPGNQYPEYPTVSPTTVMACF--SGDFLISIFNGSLFAASNEETKRVLTGTHFLLSYNPD 280 Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 ++ L TDGHR+ +E Q + + S+ +P KA+ E+ + L D +K+ L Sbjct: 281 KKLTTLKTFTTDGHRMVFSEGMTKDQSTLDEPVSLTIPVKALRELQKHLLPSD-QIKLYL 339 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDRVSIMSS 280 SE+ + R I+G +P+ +NVI + L+ ++R I+ + Sbjct: 340 SENLCRFQWGLNELVSRTIEGAYPDCENVINEILSQSSHSFTCQRGQLQDTLERFLILCT 399 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSD 339 + +K+ + S+K +++ D+ + ES+ + + P+ + +N YLLEII I +D Sbjct: 400 KSERVMKMKIESEKDYLSISQKDVARGQESIPIENFTGKPLKLLYNVNYLLEIIKAIPND 459 Query: 340 EVV 342 ++ Sbjct: 460 TII 462 >gi|237728525|ref|ZP_04559006.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2] gi|226910003|gb|EEH95921.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2] Length = 382 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 39/287 (13%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E+ YS + +L +++R A A ++R+Y+NG++ I ++ + AVATDGHR+AV+ Sbjct: 109 EHNYSVYFPTQMLSQIIKRVSHAAAQNDVRHYMNGVYLGI--DNGQFIAVATDGHRMAVS 166 Query: 185 EVDI-----VAQIAKMPS-----------IIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 DI V+ + P+ +I+P + + +ILS K+ S + Sbjct: 167 SHDIDFSDDVSDEIQYPTAPTSISNTNAGVILPNGVLPVLHKILSGSQGQFKIDYSNRNL 226 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIM----SSVR 282 + S ++ L+DG +P+++ V N + +VN + L A+ R + + S Sbjct: 227 AFTLGSHTVISNLVDGRYPDWKRVASTVAKNTELFKVNPSELTTALKRATPLLKEGSPNN 286 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN----ECPMDICFNYKYLLEIIDNISS 338 +S + L + + E M++ E +DI N YLLE + ++ + Sbjct: 287 TSVCVMSFKDNALQLKSPGTNAISCKEVMDIAKEAGKPEAMVDIGMNADYLLESLASLGA 346 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V L + + + I NK N + ++MP+R+ Sbjct: 347 CSEEGEAVQIALRDTTTGILI-------SVNK----NIYDIIMPVRV 382 >gi|269217834|ref|ZP_06161688.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212769|gb|EEZ79109.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 377 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 87/396 (21%), Positives = 176/396 (44%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK+ VE + + R I + ++PV + ++A+ DG + + + P+I I A Sbjct: 1 MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHAVIEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +VD G+ V LL D R L + K G ++ + G S+ +QS P ++P Sbjct: 61 AVDDPGTTLVHGRLLSDFARALPNKPIDMELK----GAKLEVVCGSSHISMQSMPLEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S V S + ++ + V + A ++++ L + I + + L +ATD + Sbjct: 117 SAPPMPEV-SGVVDGALWQETVAQVVTAASSDDTLPLLVSVCIEIEGKTMSL--MATDRY 173 Query: 180 RLAVAEVD-----------IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 RLAV ++ I+ + +++ I KA+G + ++ + D+S + + I Sbjct: 174 RLAVRDLTWEPANEDASHRILVRASRLSDIA---KALGSVGKVELAIDNSGRTGM----I 226 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + RLIDGE+P +N+ P + + A+ R ++ + AV+L Sbjct: 227 GFSAAGRHNVARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVVE-KNSAVRL 285 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S S ++ + D + E++ + + + FN +L E + S+ V + F Sbjct: 286 SFSEGQVILEAGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSAPYV---RLSF 342 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S +V + D +++++ ++ +LMP+R Sbjct: 343 -TSASKPAVLTAQPEIDGEDDQEFRL----LLMPIR 373 >gi|307591377|ref|YP_003900176.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822] gi|306986231|gb|ADN18110.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822] Length = 455 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 93/446 (20%), Positives = 198/446 (44%), Gaps = 81/446 (18%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV ++ I E L I+ K + P+ +VL++A D L + + +T + P S Sbjct: 1 MEFTVSQTTISEHLAQIKTILPPKPSYPILSNVLMKAKDQQLILTTFDSSLGLTTSFPVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF---------FKENELGTEVNISHGDSNFY-L 110 ++ GSI V+ LL ++ KL + +++F EN L + I +++ Y L Sbjct: 61 IEEEGSICVNGKLLVGLINKL-NATELTFKLETTEDFEEDENPL---ILIVQAENSIYRL 116 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 Q +++P E + S L S L + + + AT+E + L G+ F + L+ Sbjct: 117 QGIESNQYPELPILETLLSVTLPSHSLLSALIPVLRSYATDETKQILRGVHFLFSSSKLE 176 Query: 171 LCAVATDGHRLAVAE--VDIVAQIAKMPS--IIVPRKAVGEILRIL------------SS 214 L ++TDGHRL++++ +D +A I ++ S I +P +++++L S Sbjct: 177 L--ISTDGHRLSMSKLSLDDLAGIDEIESEGITIPGDTCQQLVKLLRGFKEDVEQPSQSP 234 Query: 215 KD---------------------------------SSVKVSLSESRIHLNIESLSMSV-R 240 ++ S+VK+S ++ + + M + R Sbjct: 235 QEDECGTRSAPQSESVQGEDEPSPTIDNNFSEPVCSTVKISWDNKQVQFELGAHQMMISR 294 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 L+ G +PN ++P + +++A++R++I++ + + ++ S ++ + Sbjct: 295 LLQGTYPNAHQLLPSEYPNSINFQVLEMKRAINRLNILNPKKNVLVLECSAQRQQIKLYW 354 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D + IE++ E + I FN KY + + + +E+ + + D +S + Sbjct: 355 LSSDHHQGIENIPAVV-ERDLTIAFNSKYFHDAVLALPGNELKFEAI----DPDQASRLV 409 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +AF +LMP+++ Sbjct: 410 ---------SLEPDCSAFVLLMPVKV 426 >gi|291539807|emb|CBL12918.1| DNA polymerase III, beta subunit [Roseburia intestinalis XB6B4] Length = 344 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 68/312 (21%), Positives = 153/312 (49%), Gaps = 11/312 (3%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 +L+ A+ +++ A+ E+ I I + G I + A + +IVRKL D + ++ + Sbjct: 7 ILIDASANEIKLTANDMELGIETKIEGEIAERGVIALDAKIFSEIVRKLPD-SDVTIETD 65 Query: 93 NELGTEVNISHGDSNFYLQSFPE-SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATE 151 T + N +S + S P + E + ++ LK ++ +T F++A Sbjct: 66 ASFKTTITCEKAKFNIVGKSGDDFSYIPYIERNEPIV---MSQFTLKEVIRQTIFSIADN 122 Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211 + + G F I E DLK+ V+ DGHR+++ +++ + ++VP K + E+ +I Sbjct: 123 DNNKLMTGELFEIEENDLKV--VSLDGHRISIRNIELKNNYSH-KKVVVPGKTLQEVSKI 179 Query: 212 L-SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 L S + V + L+++ I E+ ++ RLI+GE+ + ++ + ++++N L Sbjct: 180 LPGSAEDEVCIFLTDNHIVFEFENTTVVSRLIEGEYFKIEQMLSSDYETKVKINKRELLD 239 Query: 271 AVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 +DR +++ + + ++++ + + + N +G E +++ + I FN K+ Sbjct: 240 CIDRATLLVKEGDKKPIIMNITDGTMELKI-NSFIGSMNEDIDIAKEGKDILIGFNPKFF 298 Query: 330 LEIIDNISSDEV 341 ++ + I +EV Sbjct: 299 IDALRVIDEEEV 310 >gi|218442573|ref|YP_002380894.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424] gi|218175344|gb|ACK74075.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424] Length = 479 Score = 75.9 bits (185), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 27/350 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ +SD+ L II + T P+ + +LQA +G L I A + + ++ A Sbjct: 1 MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118 V G+ITV A LL ++ L + + EN E + I +S + ++ E+ Sbjct: 61 VSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDEY 120 Query: 119 ---PSTKEEEYVYSFELASSVLKNLVERTHFAMAT---EEIRYYLNGIFFHINEEDLKLC 172 PS E E + S +K +E + + T +E + L G+ H+ ++ KL Sbjct: 121 PDIPSLDESETI------SIKMKTFIELLNPVLPTYSEDETKQVLVGV--HLVGKNNKLE 172 Query: 173 AVATDGHRLAVAEVDIVAQIAKMP------SIIVPRKAVGEILRILSSKDSS--VKVSLS 224 TDGHRL+V ++ ++ P + + K + + + + D + +K+S + Sbjct: 173 LATTDGHRLSVTGA-LLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWN 231 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-I 283 + + N+ S ++ RL+ G +PNY +IP +L + + +AV R+ +++ + I Sbjct: 232 KELVKFNLTSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDKNI 291 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 ++ + + L +T + ++G+ E+++ + + + N KYL+E I Sbjct: 292 IVIEANKNLQTLTVTTFDTEVGQGSETIHAEF-ALNLKMGVNGKYLIEAI 340 >gi|157164122|ref|YP_001465927.1| DNA polymerase III subunit beta [Campylobacter concisus 13826] gi|112801712|gb|EAT99056.1| DNA polymerase III, beta subunit [Campylobacter concisus 13826] Length = 355 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 66/302 (21%), Positives = 145/302 (48%), Gaps = 24/302 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++ + ++ + +E+++ ++ H+ + A DG+L IKA+ EI + + ++ Sbjct: 1 MKVLINKNMLESIVTNTNPYLEKRDLSAITSHIYISAKDGVLNIKATDHEIGLAYKL-SN 59 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPE 115 V + G T + L DI++ L+D +E L T N I +S + L + Sbjct: 60 VKIVDEGYATANGKKLLDIIKSLKD-------EEVTLETVNNYLYIKQKNSKYKLPMYKF 112 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +FP E F + + +L +++ + + ++ LNG I + + + V Sbjct: 113 EDFPEFPTIEGKSKFNIDAIMLGRSLKKILPCIDSNNPKFELNGALLDIKQNYINI--VG 170 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLAV + + + S+I+P+KA+ EI ++ K +++ E+ + ++ Sbjct: 171 TDTKRLAVFK--FANEASNEFSLIIPKKAINEIQKLFFDK---IEIYYDENVLIAQSQNF 225 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +LI+G+FP+Y+ VIP ++ + + + +S++S +K++ S + + Sbjct: 226 EFFTKLINGKFPDYERVIPKDIAIRFELSRDKMVEGIKTISMLSD----QMKITFSKENI 281 Query: 296 CM 297 Sbjct: 282 TF 283 >gi|168702516|ref|ZP_02734793.1| DNA polymerase III, beta chain [Gemmata obscuriglobus UQM 2246] Length = 375 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 83/358 (23%), Positives = 164/358 (45%), Gaps = 27/358 (7%) Query: 1 MKITVERSDILELLGHACRIIE----RKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA 56 MK+T +R +L AC++++ ++ T PV ++ A D + + A E+ I Sbjct: 1 MKVTCQRDSLL----TACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYE 56 Query: 57 IPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH-GDSNFYLQSFP 114 + +V GS + L I+R+ D +IS + G E ++ F + S Sbjct: 57 LRGITVARAGSCILPITELVKILRESSD-PEISL----DAGKEAVVAKTSGGKFEMPSLD 111 Query: 115 ESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKL 171 +EFP E ++ E+ + VL+ ++ RT FA ++ R+ L G+ + + ++ +L Sbjct: 112 VNEFPDIPEFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARL 171 Query: 172 CAVATDGHRLAV--AEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRI 228 VATD RLAV E + + + +I +VP KAV + + L+ +V+V L + Sbjct: 172 --VATDTKRLAVCKGEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDA 229 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSSVRIQA 285 E ++ L+ G+FP Y+++I + +++ + V + +IM+ Sbjct: 230 LFKTERATIYTSLVQGKFPPYRDIIGKTTKEATQKVPLPVQGFLSRVRQAAIMTDDESMR 289 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342 V ++ + M G + ++ + + P +I F+ YL+E + I ++ V Sbjct: 290 VDMTFDPGSVVMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENEPTV 347 >gi|78355049|ref|YP_386498.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217454|gb|ABB36803.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 384 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 80/394 (20%), Positives = 172/394 (43%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + D+++ L A II K + L+A G++ + ++ IE G+ A Sbjct: 1 MYLKVFKEDVIDGLQKAANIIPAKTGAAYLRSIWLKAEAGMVHVLSTDSNIEFRGSYKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V D++RKL G +I+ + + GT + I G + L + + F + Sbjct: 61 VTEEGLAGVQGRAFVDLIRKLPAG-EITLHLDPKTGT-LGIEQGRRKYTLPTNDTAWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + L+ L+++ F ++ E+ + + +D + A +GH+ Sbjct: 119 FSDYPESGSVFWSGDFLQELIDKLSFCISDEDTMEAIACMSMK-PRQDNAIEACGLNGHQ 177 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI----ES 234 A+ D + + I+V +K + E+ + L + + +++++ R+ E+ Sbjct: 178 FAMQRFLNDDIHALLPAEGILVQKKYLMELKKWLGADE--IELNIDNKRLFFRTGDKRET 235 Query: 235 LSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 S+ + ++P+Y + + + L VN ++ A+DRV I ++ + L Sbjct: 236 FSLPLSYY--QYPDYTSFVSKLSTPDAGALEVNRKDMMAALDRVLIFNTDNNRCTYFDLE 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + ++ ++ ++G A ES+ Y+ I F + L+EI+++ S D + F L Sbjct: 294 AGEVSLSSQGQEVGSASESLEGTYDGSLKRIAFPTRNLIEIMNHYQS-----DSMRFTLT 348 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G +N + ++MPM+I Sbjct: 349 GTEGPCGLTG---------ENDPDYLVIVMPMKI 373 >gi|296127871|ref|YP_003635121.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109] gi|296019686|gb|ADG72922.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109] Length = 376 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 84/390 (21%), Positives = 173/390 (44%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+ V+R + + + R + + +PV V ++A+ G +++ + E+ +PA Sbjct: 1 MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADTTGTVQLSSFDYEVSARAQLPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VS LL +I R L + + GT+V ++ G S F L + P ++P Sbjct: 61 DVSEPGTVLVSGRLLAEISRALP-AKPVDVVLD---GTKVQVTCGASRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S V + + L + V + A + ++ L G+ I E + L +ATD + Sbjct: 117 SLPVMPEV-TGTVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGERVTL--LATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 RLA+ E+ + ++ + R + + + + L SV V+LS+ I Sbjct: 174 RLALREMTWKPASPTVEAVALVRARTLSDAAKSLGGA-GSVSVALSDGGGVDLIGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P + + P V+ L +A RV++++ R ++LS S + Sbjct: 233 RQTTSLLVDGDYPPVRRLFPDETPIHAIVHRQALAEAAKRVALVAE-RNTPIRLSFSDGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ + + FN ++L + + + D R+ ++ Sbjct: 292 VVLDAGQGDDAQASEALEASLVGDDISVAFNPQFLADGLGAL-------DTTFVRMSFTH 344 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + ++S D K + Y+L+P+R Sbjct: 345 PNKPVEFTGQESLEGDDRK-DYRYLLVPIR 373 >gi|238915978|ref|YP_002929495.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238871338|gb|ACR71048.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 367 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/387 (20%), Positives = 181/387 (46%), Gaps = 28/387 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + +G + + + T+ + +L+ A ++ + E+ I + Sbjct: 1 MKLVFTKSNLNKAVGIVMKAVPTRTTMNILECILIDATTNEIKFTGNDMELGIETIVEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119 + G + + A L +IVRKL D I+ ++ + N +S + S P Sbjct: 61 IIEKGKVAIDAKLFSEIVRKLPDN-DITLTTDSNNNALITCEKSKFNIAGKSGDDFSYLP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +++ + L+ LK ++ +T F++A + + G F +NE LK+ V DGH Sbjct: 120 AIIKDKMI---TLSQFQLKEVINQTIFSIAINDNNKMMTGELFEVNEGTLKV--VGLDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 R+A+ + + + A +++P K + EI +IL++ +S V + + + + + + Sbjct: 175 RIAIRNIKLEGR-ADDVRVVIPGKTLQEISKILNADAESFVNIYFTNNHVLFEFDQTHVV 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297 RLI+G++ ++ + ++ +N ++DR +++ + + +++ + L + Sbjct: 234 SRLIEGDYFKISQMLSNDYETKVSINKKEFLDSIDRANLLIREGDKKPIIINILNGLLQV 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356 V N +G E +++ + I FN K+L++ + V+DDE V L + S Sbjct: 294 NV-NSAIGALNEDIDIDKEGKDIMIGFNPKFLMDAL------RVIDDENVTIYLVNHKSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383 FIR K++ N Y+++P+ Sbjct: 347 CFIRDKEE----------NYIYLILPV 363 >gi|308184281|ref|YP_003928414.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180] gi|308060201|gb|ADO02097.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180] Length = 374 Score = 75.5 bits (184), Expect = 1e-11, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L G+ +++ L V TD Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ V+ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSS----TIKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|108562901|ref|YP_627217.1| DNA polymerase III subunit beta [Helicobacter pylori HPAG1] gi|107836674|gb|ABF84543.1| DNA polymerase III beta-subunit [Helicobacter pylori HPAG1] Length = 374 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|256370826|ref|YP_003108650.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007410|gb|ACU52977.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 366 Score = 75.1 bits (183), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 77/351 (21%), Positives = 159/351 (45%), Gaps = 38/351 (10%) Query: 48 GPEIEITG--------AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV 99 G E+E+ G ++ ++ GS A L D+VR + Q+ E+ V Sbjct: 36 GGELEVEGRESDLAIRSVLGAMGTEGSFQTPASLAVDLVRTMPSD-QVEVVVED---ASV 91 Query: 100 NISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-N 158 + G + LQ P E P E S + ++ L + + A A ++ R + + Sbjct: 92 VLRSGRAEVSLQLLPTLELPGIGEG-TTPSATVPAAALAQGIRQVAVAAARDDGRDLIYS 150 Query: 159 GIFFHINEEDLKLCAVATDGHRLA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215 + F + L+L VATDG RLA +A + + A+ +++P +AV E+ R+++ Sbjct: 151 SMLFSSTNDGLRL--VATDGTRLALRDIANLSVAGSEAR--DVVIPTRAVRELERLVTGA 206 Query: 216 D-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 + V + E + + +++ RL+D F +Y+ ++ + K+L ++ +L A+ R Sbjct: 207 GVDEIHVGIGERDAVFVVGTTTLATRLVDEPFRDYRRLVEATYPKKLLLDRLSLVDAMRR 266 Query: 275 VSIMS--SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 + M+ + +++++++ ++V P +G+ E ++ +N+ I F+ L + Sbjct: 267 LRRMAKEARNSSSIQMNMTPTACELSVRIPSVGQVHEVLDANFNDAEFTINFDPDMLADG 326 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +D + D V RL+ FI ++ D + Y+LMP+ Sbjct: 327 VDGVEGD-------VIRLE------FIEANRAACVSSADTR-EYLYILMPI 363 >gi|269977743|ref|ZP_06184703.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1] gi|269934047|gb|EEZ90621.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1] Length = 388 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 26/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 +++ + R + E + + R I ++ +PV V + A +E + + + P Sbjct: 8 VELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPL 67 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G++ V LL + R L + +++SF E+ ++I+ G + L PE ++ Sbjct: 68 ELITEGTVVVDGKLLSETARALPNKISEVSFKTEDNY---LHITCGSFHQQLLVMPEEDY 124 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + V ++ + V + + + A + +E L GI I E KLC +ATD Sbjct: 125 PQLPQLPQVVG-QVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDR 181 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +R+A+ E+ A ++ ++V K + + + ++S S+ +++ + LS Sbjct: 182 YRMALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSA 240 Query: 238 SVRLI-----DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 RL DG +P+ + + P + V ++ A RV+I+S+ + Q + LS + Sbjct: 241 GGRLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFT 300 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 L + A +++ V N + + FN + L+E + VVD+ V Sbjct: 301 QGTLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLS------VVDEPYVRLSF 354 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ +++ D+ ++ Y++MP+R Sbjct: 355 KDETKPVIITGQKEET---GDDSLDFQYLIMPIR 385 >gi|217032915|ref|ZP_03438391.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128] gi|298736180|ref|YP_003728706.1| DNA polymerase III subunit beta [Helicobacter pylori B8] gi|216945364|gb|EEC24034.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128] gi|298355370|emb|CBI66242.1| DNA polymerase III, beta chain [Helicobacter pylori B8] Length = 374 Score = 74.7 bits (182), Expect = 2e-11, Method: Compositional matrix adjust. Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|196048286|ref|ZP_03115463.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|196021023|gb|EDX59753.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] Length = 370 Score = 74.7 bits (182), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 MK T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 235 SIIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 292 SIHLKPQNSQVGTA--SVEILCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|7716426|gb|AAF68381.1|AF235031_1 putative DNA-polymerase III, beta chain [Streptomyces coelicolor A3(2)] Length = 366 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 22/311 (7%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G VS LL DIV ++ + G + + G + F L + P E+P+ E Sbjct: 64 GRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTLPLDEYPALPEP 118 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + L V + A++ EE L GI H + E L ATD A Sbjct: 119 GTITG-TLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTLYATDA---TFA 174 Query: 185 EVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSMSV 239 + + A +P S ++P +A+ ++ D++V ++L L + + ++ Sbjct: 175 VRTLSWKDANLPDTSAVIPGRALRRA--KATADDTTVDLALPTGDAGLFTLRSDLTTTAI 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-LCMT 298 R ++GE P Y + P V L+ A RV+++S+ + +KL+ ++D L + Sbjct: 233 RALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTADSTLVLE 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A++S++ + I FN +LL+ ++ + + + V F S Sbjct: 293 GGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNAL-----MAESVQFDFISPTKPAV 347 Query: 359 IRGKDKDSKNN 369 +R D D + + Sbjct: 348 LRAHDGDDQAS 358 >gi|257469639|ref|ZP_05633731.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185] gi|317063875|ref|ZP_07928360.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] gi|313689551|gb|EFS26386.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] Length = 363 Score = 74.3 bits (181), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 89/390 (22%), Positives = 167/390 (42%), Gaps = 34/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +++ +L I++ P+ + ++A + L+ + E++ + A Sbjct: 1 MKFSIKREELISILSEYTNILKDNPIKPIVSGLQIKAENNLITFVGTNLEVDHIRKVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + LL + + KL D I F N I+ + F + E FP Sbjct: 61 VKEEGSLVLKPFLLLEYI-KLLDEEYIEFILNNGF-----ITVHQAEFSI--LEEGTFPV 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + + L L+E++ FA + + I+ + F +NE +L V+TD Sbjct: 113 ITETTPIKLLAITGGELVKLLEKSKFAASLTNDNIQINCVRVIFKLNEINL----VSTDS 168 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL + D + K I +P + I ++L + V + S + L E+ S Sbjct: 169 YRLLYMKADKNCHVEK--EISIPMDTINVICKLLKDSEKEVTIGFSGENVILTWENAYFS 226 Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + I FP+++ ++ S K + N L+ A+ RV ++ + A ++ K Sbjct: 227 SKTIALPFPDFKGILANNSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKT 286 Query: 298 TVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N GKA + +N+ N K+L E IDNIS + V+ S +S Sbjct: 287 LLINAFSGKAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVIK-------GSGSS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+F + + K + Y+LMP+ + Sbjct: 340 SMF--------EITETGKEDYRYILMPLAL 361 >gi|319440151|ref|ZP_07989307.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM 44702] Length = 262 Score = 73.9 bits (180), Expect = 3e-11, Method: Compositional matrix adjust. Identities = 65/262 (24%), Positives = 117/262 (44%), Gaps = 18/262 (6%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 + ++ + A ++ L GI I+ E + L A TD RLAV VD A + Sbjct: 5 LFAEVISQVAVAAGRDDTLPMLTGIRMEIDGEHVVLAA--TDRFRLAVRTVDWAPARADI 62 Query: 196 PS-IIVPRKAVGEILRILSSKDSSVKVSL------SESRI-HLNIESLSMSVRLIDGEFP 247 + +++P + + + R L S V+++L SR+ + + + RLID +FP Sbjct: 63 SAELLIPARTLADTARSLDSNGEPVEIALDTDAASGGSRLLGIATDDRRSTTRLIDADFP 122 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 ++ ++P N V T L A+ RVS+++ Q ++++ L ++ D+G A Sbjct: 123 KFRPLLPKQNTALATVEITPLLDAIRRVSLVTEGNSQ-IRMAFEEGGLTISGGGSDIGVA 181 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 E + + P+ I FN YL + + I +D VV F S + +F +D Sbjct: 182 EEQLPCAFVGEPLVIAFNPGYLKDGLGAIHTDRVV---FGFTQPSRPAILFPEPEDLPEA 238 Query: 368 NN----KDNKVNAFYVLMPMRI 385 + Y+LMP+R+ Sbjct: 239 GPDGAFPTPETPFTYLLMPVRL 260 >gi|134122662|dbj|BAF49636.1| DnaN [Microcystis viridis NIES-102] Length = 181 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 40/149 (26%), Positives = 88/149 (59%), Gaps = 4/149 (2%) Query: 197 SIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 ++ +P +A+ E+ R++++K + ++ + + +S++ + ++ R ++G +P Y +IP Sbjct: 1 NVTIPARALRELERMMATKQNIETITLHVDDSQVIFEMGEQRLTSRKLEGAYPTYNQLIP 60 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMN 312 S D+ L ++ L + ++ V+++S + VK SL S D+L + V++PD+G A ESM Sbjct: 61 KSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMA 120 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEV 341 DI FN KYL++ + + ++++ Sbjct: 121 AEIQGESGDIAFNVKYLMDGLKALPNNDI 149 >gi|160902631|ref|YP_001568212.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95] gi|160360275|gb|ABX31889.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95] Length = 370 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 8/247 (3%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE--IRYY 156 + IS G+S F L + EFPS E S L +++ N++++ F + + Sbjct: 95 LKISGGNSVFRLPTMDPDEFPSLAFEVTGNSILLDRTIITNMIDKVVFCALKDSSSLSRN 154 Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-K 215 LN +++ + L VATD +RLA++E + P ++ K++ E+ ILSS K Sbjct: 155 LNAVYWDFRQGGF-LNLVATDSYRLALSESKLEDDNILSP-FLLSLKSMDELKTILSSAK 212 Query: 216 DSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 V+V S S+I + E + + +ID EFPNY ++IP S +++ + + Sbjct: 213 TEKVRVVQSGSQILFDFEEDNNQLIYNVIDAEFPNYLSIIPESFITKIKAKTSEFLAIMK 272 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 R+SI + + L++ ++ +PD+G+A E ++V ++I ++ +Y E + Sbjct: 273 RMSITAGSE-EYTLLNIEDGRIQFYASSPDVGEAKEEIDVEQEGKNIEIAYSPRYFREAL 331 Query: 334 DNISSDE 340 + I + E Sbjct: 332 ERIETVE 338 >gi|50364817|ref|YP_053242.1| DNA polymerase III, beta chain [Mesoplasma florum L1] gi|50363373|gb|AAT75358.1| DNA polymerase III, beta chain [Mesoplasma florum L1] Length = 373 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 23/374 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ +S +L L A ++IE KN P V ++ + L I +S + Sbjct: 1 MRLSINKSVLLNELTKASKLIELKNVNPALQGVYMEVSFDKLVIVSSNTSTSFKAELNNE 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ G I V + +++RKL + +S F ENEL I SN + Sbjct: 61 NSDLIIEQPGRILVKPKFILELLRKLDSEFVTLSTFAENEL----EIITEKSNLKVSILN 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP E + S K+ + +T ++ + L G+ I +D K+ V Sbjct: 117 VEEFPLIGFVENGLELSIDSQEFKSTLTQTISSINEWNQKVVLAGMNLKI--KDNKISFV 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD R+++ E+ + + II+P K + E LR L K+ + ++ +++ Sbjct: 175 TTDLFRVSLKEIILNEATNQEVDIIIPYKTLIE-LRNLIENVKEFKIIIHDTNATFKLDN 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293 + LIDG +PN + P +++ +L + L + + R + + I + V L + Sbjct: 234 DLLQSTLIDGRYPNVHSAFPTTHEIKLELKAKTLLKVLSRFELTNDQNITSVVNLEIQQS 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350 + + + K E Y E ++I FN KYL+E I + DD+++ Sbjct: 294 GIILKTTIAETVKYEEKFTEYKYEGSSNLNINFNTKYLIEAIRSF------DDQLIHLTF 347 Query: 351 DSSNSSVFIRGKDK 364 +S N V I G K Sbjct: 348 NSQNKPVLITGAQK 361 >gi|295394845|ref|ZP_06805058.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972178|gb|EFG48040.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 383 Score = 73.9 bits (180), Expect = 4e-11, Method: Compositional matrix adjust. Identities = 94/389 (24%), Positives = 169/389 (43%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 +K VER + + A + + ++ IPV VL+ A+ +G + E+ + A Sbjct: 11 VKFKVERDVFADAVTWAAKNLPQRPVIPVLTGVLVTADSNGTVRFAFYDLEVSQRITVEA 70 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ VS LL DI R L Q+ N +V+IS G S F L + P E+P Sbjct: 71 DVETPGTFLVSGRLLADIARALPP-QQVVLELNN---GKVDISCGSSRFSLMTMPVEEYP 126 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +++S ++ V + A + ++ L + I E K+ +ATD + Sbjct: 127 DLPTIPDTTGV-VSASTFQHAVSQVAVAASRDDTLPVLTSVRIEI--EGDKVTLLATDRY 183 Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV + + + + R K + E+ + +S D + ++ S + L+ S Sbjct: 184 RLAVRQFTWNPRTPDFSANALLRAKTLSEVAKSMSG-DLEISIAESNGKEMLSFTSDGRV 242 Query: 239 VR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 V LI+G++P +++ P + + LR+AV RVS+++ R +K + L Sbjct: 243 VTSLLIEGDYPKVRSLFPKESTITAVLQVGALREAVRRVSLVAE-RNTPIKFEFTDGSLV 301 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A E++ + FN Y+ E ++ I + V F L Sbjct: 302 LRAGAGDDAQASEALPATIEGGDILTGFNPHYISEGLNAIDT-----PYVRFSLTDPKKP 356 Query: 357 VFIRGKDKDSKNNKDNKVNAF--YVLMPM 383 V I G + D +V++ Y+LMP+ Sbjct: 357 VVISGMQE-----PDGEVDSAYRYLLMPI 380 >gi|317010749|gb|ADU84496.1| DNA polymerase III subunit beta [Helicobacter pylori SouthAfrica7] Length = 374 Score = 73.6 bits (179), Expect = 5e-11, Method: Compositional matrix adjust. Identities = 86/395 (21%), Positives = 179/395 (45%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D KE+ L I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNITLETKEDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L G+ ++ L V TD Sbjct: 117 EFPVIDPKVSLEVNAPFLVDAFKKIAPVVEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ ++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLKNISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L ++D+ A S+ + E + N K+ LE ++ + + + V + Sbjct: 287 ALFESLDSEHSETAKTSIEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLQC 341 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S+S I+ ++ +++ + K++ ++MP+ + Sbjct: 342 NESSSPFLIQEPLEEKQSHLNAKIST--LMMPITL 374 >gi|118799|sp|P21174|DPO3B_MICLU RecName: Full=DNA polymerase III subunit beta gi|149849|gb|AAA25316.1| DNA polymerase III beta subunit (dnaN) [Micrococcus luteus] Length = 310 Score = 73.6 bits (179), Expect = 6e-11, Method: Compositional matrix adjust. Identities = 75/314 (23%), Positives = 146/314 (46%), Gaps = 12/314 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + + + A R + + +PV +L+ A G++ I + E I A Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119 V+ G + VS LL DIVR L AQ++ EL G +V ++ S F L + P ++P Sbjct: 61 VETAGQVLVSGRLLNDIVRSLPQ-AQVTV----ELDGGKVLVTCRSSRFSLATMPVGDYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + + + + V + A + ++ L + I + + +ATD + Sbjct: 116 ALPELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITF--LATDRY 172 Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ E+ A + S+++ + + E+ + L S D + + + + Sbjct: 173 RLAMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DGE+P +++ P S+ + V+ L +A RV++++ R A+++ + ++ + Sbjct: 233 TSVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAE-RNTALRMVFTEGQVTL 291 Query: 298 TVDNPDMGKAIESM 311 D A ES+ Sbjct: 292 DAGTGDDASANESV 305 >gi|26553454|ref|NP_757388.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2] gi|26453460|dbj|BAC43792.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2] Length = 378 Score = 73.2 bits (178), Expect = 7e-11, Method: Compositional matrix adjust. Identities = 82/353 (23%), Positives = 169/353 (47%), Gaps = 23/353 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V ++ ++ L I E + PV L++ ND ++ S I + S Sbjct: 7 MKIIVSKTKLINALRLCNSISENIFSSPVFLGTLIEVNDNEIKFTTSNGIISTHSIVAKS 66 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 D G I + + I+ KL++ I+ K + +V S DSN + E Sbjct: 67 EDANILEKGRILIKTKPFFAIISKLKN-EMITLEKVDNSVIKVKTSTFDSNINIMD--EE 123 Query: 117 EFPSTKEEEYVYS----FELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKL 171 ++P+ + Y+ ++ V K + + +A+ + + ++GI F+ + L Sbjct: 124 QYPNI---NFSYNDWNQLSISPIVFKKSISKVKYAVNNNKEKINIMSGICFNSISSEKTL 180 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATDG++LA + + Q + IV ++ E+L + D+++++ L ES I Sbjct: 181 EIIATDGYKLAHYKFESTPQDFR----IVLDVSLIELLLEIIDFDTNIEIFLFESNIIFK 236 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSL 290 + + ++ ++I+G++PN +I + ++ ++ L +A++R ++I SS + VKL+ Sbjct: 237 VSNTIIASKIIEGDYPNVSRIIATPKENKVNISKKTLVEALERGLAISSSEKKSIVKLNF 296 Query: 291 SSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341 SS+ L ++ + D+G + E+++ NE P I N +LL ++ +D + Sbjct: 297 SSEVLEVSFSSSDLGNSKETVSCKGKVNE-PTPISLNNHFLLSLLKTFDNDNI 348 >gi|168704010|ref|ZP_02736287.1| DNA polymerase III subunit beta [Gemmata obscuriglobus UQM 2246] Length = 366 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 67/305 (21%), Positives = 132/305 (43%), Gaps = 17/305 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T++R + LL A + + T PV V + +DG + + A+ E+ +TG A Sbjct: 1 MNLTIDRDTLAGLLRTAAPAVPSRTTAPVLRCVKVTTSDGSVSVSATNTELFVTGRATAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A ++ V KL +S G + + ++ L + S+FP Sbjct: 61 TGKPGSLCVPADVIQSAV-KLAPSGPVSIVS----GARAELKYAGGSYKLNTEDVSKFPE 115 Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E SFE+ + L + R F + + +G++ + + AVATD Sbjct: 116 WVPPELQGVSFEIDAPALVRCLTRVAFCCSERVESFTTSGVWLEVANGEFN--AVATDSI 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +A + + S +VP V + S + V V++ S + +SLS++ Sbjct: 174 RLGIATAKVADGV--QASALVPAPTVQAVKAAFSGRTGPVTVTVWGSTVRFADDSLSIAS 231 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+ G+F ++ + +++++ + T D +++ +VR V + + +T Sbjct: 232 PLLTGKFAPWRML-----EQKVKPHGTTFVD--DPSALLRAVRRATVTADAADTAVVLTG 284 Query: 300 DNPDM 304 + P + Sbjct: 285 EGPTL 289 >gi|229035394|ref|ZP_04189299.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] gi|228727940|gb|EEL79011.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] Length = 375 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 MK T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 6 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 65 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 66 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 122 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 123 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 180 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 181 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 239 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 240 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 296 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 297 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 350 NQRPIVVVGAEDTTHSN-------LQLILPVRV 375 >gi|44004430|ref|NP_982098.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] gi|229021575|ref|ZP_04178173.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] gi|229027504|ref|ZP_04183734.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|229164606|ref|ZP_04292497.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] gi|42741496|gb|AAS44941.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] gi|228618841|gb|EEK75776.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] gi|228733808|gb|EEL84572.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|228739746|gb|EEL90145.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] Length = 370 Score = 72.8 bits (177), Expect = 8e-11, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 MK T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 235 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|228970059|ref|ZP_04130767.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228789679|gb|EEM37553.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 370 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175 Query: 176 TDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 176 TDAHRLARLHFDCTKVTIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 235 SIIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|149200629|ref|ZP_01877632.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155] gi|149136278|gb|EDM24728.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155] Length = 209 Score = 72.8 bits (177), Expect = 9e-11, Method: Compositional matrix adjust. Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 21/228 (9%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 + G+ I D VATDG R+A+ E I + + I+P KA E+ ++L Sbjct: 1 MTGLLLTIT--DGTFTTVATDGRRMALVETVIGSDSSLDSDSILPLKAAQELPKVLEGS- 57 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 S VKVSL ++ + + + +L++G FPNY+ V+P + + + A+DRVS Sbjct: 58 SDVKVSLGDTHAVFSTDDVVFQTKLLEGNFPNYRMVMPPGFENHVTMPRDEFYSALDRVS 117 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 + + AVKLSL+ ++ ++ N + A + Y +D+ FN +L++ + ++ Sbjct: 118 QILD-KNPAVKLSLTPTEVLISAMN-NAEVAESPIPASYEGENLDLSFNASFLIDPLRHL 175 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +++ +R D+ S YV+MP+R Sbjct: 176 ECNKLT----------------LRFNDRLSPTGLYGDEGFLYVIMPLR 207 >gi|190015717|ref|YP_001967211.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|208702194|ref|YP_002267438.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217956718|ref|YP_002335812.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|229142295|ref|ZP_04270815.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] gi|116584624|gb|ABK00741.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|208658049|gb|ACI30419.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217068406|gb|ACJ82654.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|228641146|gb|EEK97457.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] Length = 370 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 235 SIIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|319440838|ref|ZP_07989994.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM 44702] Length = 366 Score = 72.4 bits (176), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 85/387 (21%), Positives = 152/387 (39%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T + D+ L I K T P+ VL+ D A ++ IP Sbjct: 1 MKTTFAKHDLARALELTKPAIPSKPTQPILAGVLITVGDDTATFDAFDQSSQVHTTIPCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + L+D+V KL D I+ +G+ + G F L ++P Sbjct: 61 TSEPGQVLLPHRTLHDVVAKLPD-KPITI---THMGSAAQFTCGPRTFELPPMTLDDYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + S L + A ++ L GI ++ D L ATD R Sbjct: 117 LPDMPPAVG-TIDWSDLAAAIREVGAAAGRDDTLPMLTGI--KVDSHDGALTLAATDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + M ++P + + + R D V + + R+ + +R Sbjct: 174 LAHTTLPWDGDDLDM---LIPARDILTLARTTWHGD--VTIHHDQRRLGFTLGDTRTILR 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +FP ++ +IP +D +R++ + AV S+++ Q V LS++S ++ + Sbjct: 229 LIDADFPKWRPLIPKDSDTTIRIDRKTMADAVKFTSVLAGDTGQVV-LSITSGQVTIASK 287 Query: 301 NPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 G E + + NE ++I F +YLL D ++ D + F + V+ Sbjct: 288 TAQDGAGEEVIACDTVGNE--LNIAFTSRYLL---DALAGDGTA--LMTFTQPGRPAMVW 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + K + ++LMP+R+ Sbjct: 341 ---PDLPCEEGKVPDADRGHLLMPVRL 364 >gi|332798025|ref|YP_004459524.1| DNA polymerase III subunit beta [Tepidanaerobacter sp. Re1] gi|332695760|gb|AEE90217.1| DNA polymerase III, beta subunit [Tepidanaerobacter sp. Re1] Length = 381 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 23/355 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + R+++ + + + K I + + A D L + A+ ++ I I Sbjct: 1 MKIVISRNELASGISAVEKFVPSKTPISILTGIKFSAYDDFLCLSATNLDMGIEYKIKNE 60 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 D GSI + + +L +IVR++ + +EN+ IS G N L F Sbjct: 61 SDKLSILEGGSIVIGSKILSEIVRRISENTVEFDIRENK----AYISSGQFNMVLPCFDA 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAV 174 +FP L S+ K++++RT +A A + R L G I+ +D L V Sbjct: 117 MDFPEISRNNSSDGIRLRQSMFKDMIKRTIYARADDTTSRPQLTGAL--IDYKDNILNMV 174 Query: 175 ATDGHRLA-----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRI 228 A DG R+A + E + A + IVP + EI RI + + ++ S++ + Sbjct: 175 ALDGFRIAWCCEQLNETE--ASDIREFKTIVPGDTLLEISRIFEDDEQAYFELYASKNSV 232 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAV 286 E ++ R++DG+F +Y+ V+ V LR AV+R S+++ V Sbjct: 233 EFLTEKFLITSRVLDGDFIDYKTVMQIKPKTTAIVPTDELRLAVERASVLAREGNTNNLV 292 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 K ++ + + + V+ ++G+ + + M I FN + ++ + I S ++ Sbjct: 293 KFYIAENSIEVQVET-ELGRITDKVLCSTEGEEMLIAFNAGFFIDALKTIFSPKI 346 >gi|208434423|ref|YP_002266089.1| DNA polymerase III beta-subunit [Helicobacter pylori G27] gi|208432352|gb|ACI27223.1| DNA polymerase III beta-subunit [Helicobacter pylori G27] Length = 374 Score = 72.0 bits (175), Expect = 1e-10, Method: Compositional matrix adjust. Identities = 80/352 (22%), Positives = 160/352 (45%), Gaps = 24/352 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++++ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIDPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S S +++ E+ H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L ++ Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342 L ++D+ A S+ + E + N K+ LE ++ + + + V Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338 >gi|296271493|ref|YP_003654125.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833] gi|296094280|gb|ADG90232.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833] Length = 364 Score = 72.0 bits (175), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 72/342 (21%), Positives = 155/342 (45%), Gaps = 12/342 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V R + + + R++ ++T+P +LL+A D L I E+ I A Sbjct: 1 MKIRVNRDVLADAVAWTARLLPGRSTVPALSGLLLEA-DADLRISVFDYEVSAWAQIEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + +L +I + L D + +++ G E ++ G + L P+ +FPS Sbjct: 60 VAAPGRVLIPGRVLAEITKSLPD-RPVDLYRD---GGEAVLTCGSLEYDLLVLPDEDFPS 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + + A + ++ L G+ I+ + +++ ATD +R Sbjct: 116 LPAMPP-KAGAVGGGVFASAAGQVAAAASRDDSLPMLTGV--RIDIDGVRVSMAATDRYR 172 Query: 181 LAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A E + + ++VP + + E R S ++ + + L E+ I L + ++ V Sbjct: 173 IAAREFLWHPERPDERRGVVVPARLLVEAAR--SLREGEISIGLGENVIGLRNQDRTVIV 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL+D +F +Y++ + + +AV RV++++ V+L+ S ++ + Sbjct: 231 RLLDDQFIDYRSRLSEQWPIHADLALAPFVEAVKRVTLVAEPN-TPVRLAFSPGQVLIRA 289 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +G++ E + + +DI F +LL+ + + ++ V Sbjct: 290 GGGSIGRSTEIVAAELDGPDIDIAFQPHFLLDGLAGVETERV 331 >gi|330948082|gb|EGH48342.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 109 Score = 72.0 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 63/109 (57%) Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + + Sbjct: 1 HRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFT 60 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++ Sbjct: 61 SKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIR 109 >gi|190014973|ref|YP_001966586.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|190015240|ref|YP_001966912.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|218848497|ref|YP_002454937.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|116584649|gb|ABK00764.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|116584921|gb|ABK01030.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|218540548|gb|ACK92944.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] Length = 370 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 235 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|221642091|ref|YP_002533178.1| DNA polymerase III, beta subunit [Bacillus cereus Q1] gi|229113013|ref|ZP_04242513.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] gi|221243026|gb|ACM15735.1| DNA polymerase III, beta subunit [Bacillus cereus Q1] gi|228670406|gb|EEL25749.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] Length = 370 Score = 71.6 bits (174), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N G++ + + G E + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ D K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233 TD HRLA D IAK +++P K++ L++ + +++++++ L S++++ + E Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 235 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + N +G A S+ + N+ + N +YLL+ + I+S + + ++ S Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G + + +N +++P+R+ Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|325914679|ref|ZP_08177020.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325539181|gb|EGD10836.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 374 Score = 71.2 bits (173), Expect = 2e-10, Method: Compositional matrix adjust. Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 32/359 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCH--VLLQANDGL-LEIKASGPEIEITGAI 57 M IT R D+L + + +R+ T + H + ++A +G + S +I A Sbjct: 1 MHITTTREDLLAAIAPLMSVAQRR-TKSRNGHANLTIRAGEGTQIHFNTSDENSDICTAS 59 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ---SFP 114 A++ G I VSA L DI+R G+ + ++ G +NI S F + Sbjct: 60 TATIRERGEIGVSAKRLSDIMRSFASGSLVEMQRK---GNFLNIKLDGSRFSINCDGPLA 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCA 173 + K + F+LA+ K L++ +A L G+ FH+ + L+L Sbjct: 117 PVTRQAAKTGQTTGKFDLAADEFKYLLDAACSGVAGLGSDSKLPQGVLFHLTGDRLRL-- 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLN 231 V TDG R+AVA I + +++ +V +I +LS D + S H+ Sbjct: 175 VGTDGGRMAVASTSI--NTLQAEKLVLGHNSVADIRTLLSKARSDEQIGFSWGSGMAHIK 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + V ++ + +Y+ ++ + V +LR+ + R I+S+ AV + L+ Sbjct: 233 TTYADLHVGVLANTYVDYERIMAANTVNPFHVGLADLREILTRTLILST----AVTVKLT 288 Query: 292 SDKLC-MTVDNPDMGKAIESMNVYYNECPMD--------ICFNYKYLLEIIDNISSDEV 341 L +T D + ES+ E P D I N +YLL+ ++ + + V Sbjct: 289 GRTLSFITADQASRSQGQESIESI--ELPADARRVNDFAISVNAQYLLDALNAVRGESV 345 >gi|258406589|ref|YP_003199331.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM 5692] gi|257798816|gb|ACV69753.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM 5692] Length = 393 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 95/411 (23%), Positives = 168/411 (40%), Gaps = 58/411 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + +L A II K + L+A D L I ++ ++E +G+ PA Sbjct: 1 MLVRISKEQVLSGFQKAAGIIPMKTGAAFLRTIWLEAKDNHLTIMSTDSKLEFSGSYPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS------FP 114 V+ G I V YD+ RKL G ++E V + G + L + P Sbjct: 61 VETPGLIGVPGKKFYDLFRKLPPGEITLHAADSE--DHVLLEQGRRKYKLPTNDASWFQP 118 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN--GIFFHINEEDLKLC 172 S FP E+E V + LK ++ R + +A +E +N I N E ++ C Sbjct: 119 FSAFP---EDEAVL---WSGDFLKEIINRITYCVADDESMNGMNCLKITPWPNSEAVEAC 172 Query: 173 AVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESR 227 + +GH+ A+ DI A I+P+ GE IL +K+ +K LS Sbjct: 173 GL--NGHQFALMRFLNPDIHA--------ILPQDDEGEDSGILIAKNYLLELKKWLSSDE 222 Query: 228 IHLNIESLSM-----------SVRLIDGEFPNYQNVIPCSNDKELRVNCTN--LRQAVDR 274 I+ I+ + S+ L +FP Y+ + ++ ++N + A++R Sbjct: 223 IYFTIDQKRLFFTNGKKNEIFSLPLSTYKFPKYETFLSNFQNETSKLNIGRDEILDALER 282 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 V++ ++ + S ++ + + G+A ES+ V Y+ I F L+E++ Sbjct: 283 VALFNTENQRCSYFVFDSTEMIVYSQGQETGEATESLGVEYSGDLKKIAFPTTTLIEVLS 342 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S + + F I GK+ DS V+MPM + Sbjct: 343 HFQS-----EMITFEFTGVEGPCKITGKE-DS--------GYLVVVMPMHV 379 >gi|298529212|ref|ZP_07016615.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298510648|gb|EFI34551.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 77/354 (21%), Positives = 165/354 (46%), Gaps = 21/354 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + D +E + A +I K + + + + I ++ +E TG A Sbjct: 1 MKIIIYKEDFVEGISKASNLIPTKTGAAYLRTIWFKTDMDSVRIMSTDSNVEFTGEYRAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + D++RKL+ G I+ + +E + + +F L S FP Sbjct: 61 IVEEGLIGTPGRKISDLIRKLKSGP-ITMYS-DEKNDILYVQQEKRHFKLPLSESSWFPE 118 Query: 121 TKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATD 177 E EE + + K+++E++ F ++ ++ + + +E+ ++ CA + Sbjct: 119 LDEFPEENALA-GIPGIKFKDILEKSLFCISDDDTMQGMTCLKIAPGDENQVEFCAF--N 175 Query: 178 GHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--- 232 GH+L+ + E + +I I++ +K + ++ + + D +++++++S+I Sbjct: 176 GHQLSLYIHESSGLREILPEKGIMIAKKYLMDLRKWVPESD--IQITITDSKIFFRTLDK 233 Query: 233 -ESLSMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 E S+ + + +FPNY++ I ++K L +L +++R+ I ++ + + Sbjct: 234 KECFSLPLNM--HQFPNYRDFINNYSEKLGGPLVTTKNDLMDSLERILIFNTDSQMSTLM 291 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 L +++ MT D G+A E + Y ++ FN K LLEI+ +I D VV Sbjct: 292 RLGQEEIYMTSTAVDSGEAEEVVGCSYQGNLKEVVFNTKSLLEILGHIDDDNVV 345 >gi|39938488|ref|NP_950254.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M] gi|39721597|dbj|BAD04087.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M] Length = 378 Score = 71.2 bits (173), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 89/381 (23%), Positives = 174/381 (45%), Gaps = 31/381 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + + + LE L +I+ +K P+ + +Q + L ++A+ I I I Sbjct: 1 MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENNLILEANNGNIAIKIEIKDE 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQ---SF 113 + G I +I++K+ D +I+ + N L + S + L +F Sbjct: 61 SLKIKKQGKIACLGRYFIEIIKKISDSLIKITVMENNFLV--IKTSFCEYKLKLMDVCNF 118 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E +F K + SF++ + LKN+++ + + + E R L G+ LK C Sbjct: 119 LELDFSFQKLD----SFQIETHFLKNMIKEINISTSKNEKRPILMGLNLIYQNNLLKAC- 173 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNI 232 ATD R++ ++++ + +I++P K++ E+ +IL S +K+ +I L I Sbjct: 174 -ATDSFRMSQKKINLDIEYHNF-NIVIPNKSLEELSKILEHCQSKYLKIYSDTQKIFLEI 231 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLS 289 ++L L++G +P Q + + + +N +L +A++RVS++ S + +K Sbjct: 232 DNLWFQTSLLEGNYPQIQEIKLTNFPFSVHLNKDDLMKALERVSLLFSKEQMNTNVIKFI 291 Query: 290 LS-SDKLCMTVDNPDMGKAIES---MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 L+ + + ++ + +G A+E + V N I FN KYL +++ +S E Sbjct: 292 LTKQNSIEISSSSESLGTALEKIIPLKVSANS--FQIAFNAKYLEDVLKVLSV-----KE 344 Query: 346 VVFRLDSSNSSVFIRGKDKDS 366 VVF D+ I +KDS Sbjct: 345 VVFYFDNPLKPFIITTLEKDS 365 >gi|296271547|ref|YP_003654178.1| DNA polymerase III subunit beta [Arcobacter nitrofigilis DSM 7299] gi|296095722|gb|ADG91672.1| DNA polymerase III, beta subunit [Arcobacter nitrofigilis DSM 7299] Length = 356 Score = 70.9 bits (172), Expect = 3e-10, Method: Compositional matrix adjust. Identities = 78/350 (22%), Positives = 166/350 (47%), Gaps = 30/350 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAI 57 M+ + ++ ++ +E+K++ ++ H+ L+ + L +KA+ EI + I Sbjct: 1 MRFIIAKNIFENIISSMQPFLEKKDSSSITSHIYLEVINSKLILKATDYEIGLESYVNDI 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 S D G TV+ L I+++L++ I +N L I S F L + +E Sbjct: 61 EESTDGKG--TVNGSNLLGIIKRLKNDKIIVETIDNNLV----IKQSRSTFKLPMYDANE 114 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + +++ L N + + A+ ++ LNG I ++ K+ VATD Sbjct: 115 YPNLIMNTELNILNISTISLVNSIRKITPAIDNNNPKFELNGALIDI--KNSKINFVATD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA++ + ++ I+P+KA+ EI ++ K++ ++ + + ++ Sbjct: 173 TRRLAISHLQNISN--NESQFIIPKKAIIEIQKLFLD---DAKIAYDDTNLVIETDNSKF 227 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA--VDRVSIMSSVRIQAVKLSLSSDKL 295 +LI+G+FP+Y+ +IP S L+ N T L +A +D + +++S+ +K++ S + + Sbjct: 228 FTKLINGKFPDYERIIPNS----LKYNLT-LPKAMLIDSIKLVTSL-FSNIKITFSPNSM 281 Query: 296 CMTVDNPDMGKAIE---SMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + D + +N+ N + N KYLL+ + +++ VV Sbjct: 282 VFESLDEDTESKTQIDIDLNISEN---FYLAVNAKYLLDFLSMSNNENVV 328 >gi|262340837|ref|YP_003283692.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272174|gb|ACY40082.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 386 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 68/292 (23%), Positives = 145/292 (49%), Gaps = 25/292 (8%) Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--YLQSFPESEFPSTKEE 124 + VS L+ D++ + + FFK+ ++ + G Y + + F K++ Sbjct: 68 VVVSTKLMIDVLTTFPN--ETLFFKKKKIALNIFSEQGSYKIPIYFHKYSMNFF---KKK 122 Query: 125 EYVY-----SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E ++ L S++L ++ +T FA+ ++ + LNG+FF + + VATD Sbjct: 123 ESIFRSSTMKITLFSNILSKILNQTLFAVGDKKFQPILNGVFFQFSPYEANF--VATDTF 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--NIESLSM 237 R+ + + + K +P+K++ I IL ++ +S V ++I++ + ++ Sbjct: 181 RMVKYTIKNL-KFDKYIEFTIPKKSLDIIREILKNEKNSNIVIEYNNKINIVFHFQNHIF 239 Query: 238 SVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 S RLI+ ++PNY +VIP +N D +N L + R+SI S + + L L+ +KL Sbjct: 240 SCRLINQKYPNYNSVIPNNNCDVSFVINRLLLLNTIRRISIFSKKKKNFIHLHLNRNKLK 299 Query: 297 M----TVDNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341 + ++N + G I+ ++ + ++ + FN K+L+EI+ +++ + + Sbjct: 300 IFEQKAINNYNFGSKIKCKPIFDDLRKIESIQMGFNSKFLIEILSSLNENFI 351 >gi|212703754|ref|ZP_03311882.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098] gi|212672722|gb|EEB33205.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098] Length = 384 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 91/402 (22%), Positives = 180/402 (44%), Gaps = 46/402 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++V + I+E L A II K + L+A G L I A+ IE TG PA Sbjct: 1 MKLSVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEKGSLSIMATDANIEFTGRYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNF--------YLQ 111 V G I V D+VR+L G Q++ +E + + G + + Q Sbjct: 61 VKQPGLIGVQGRAFVDLVRQLPAGVLQLTL---DESTGNLLLEQGRRTYKLPVSGAEWFQ 117 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK 170 +F SEFP + F L+++++R F ++ ++ + ++ + Sbjct: 118 NF--SEFPDETPVTWSGDF------LQDVLDRVVFCISDDDATDAITCLYMKPCGNGRID 169 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 +C + +GH+ A+ A++P +++ +K + ++ + L + +++++++ R+ Sbjct: 170 VCGL--NGHQFALVSFTHDDLAARLPEEGVLIQKKYLQDMKKWLGVDE--IELNITDKRL 225 Query: 229 HLNI--ESLSMSVRLIDGEFPNY---QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 +L + S+SV ++P+Y + + L VN +A+ R+ I ++ Sbjct: 226 YLRTLDGAESLSVPRAGHDYPDYTVFMSRLEGDGVSLLTVNRKEAIEALGRIQIFNTDSD 285 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + L L +++ ++ D G A ES+ V Y I F + L++++ + SS V Sbjct: 286 RCAYLDLGDNEVRLSAQGQDTGSANESLEVTYRGDISRIAFPTRNLMDVLGHFSSPSV-- 343 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + L + IRG ++DN+ ++MPM+I Sbjct: 344 DMI---LTGAEGPCGIRG-------SEDNEYTV--IIMPMKI 373 >gi|253584029|ref|ZP_04861227.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium ATCC 27725] gi|251834601|gb|EES63164.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium ATCC 27725] Length = 363 Score = 70.5 bits (171), Expect = 4e-10, Method: Compositional matrix adjust. Identities = 90/394 (22%), Positives = 163/394 (41%), Gaps = 42/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +++ +L I++ P+ + ++A L+ + E++ + A Sbjct: 1 MKFSIKREELISILSEYTNILKENPIKPIVSGLQIKAESNLITFVGTNLEVDHIRKVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + LL + + KL D I F N + + H + E FP Sbjct: 61 VKEEGSLVLKPFLLLEYI-KLLDEEYIEFILNNGF---ITVHHAE----FSILEEGTFPI 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI--FFHINEEDLKLCAVATDG 178 E + + L+E++ FA + +N + F +NE +L V+TD Sbjct: 113 ITETTPIKLLSINGGEFVKLLEKSKFAASLTSDNIQINCVRAIFKLNEINL----VSTDS 168 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL + + + K I +P + I ++L + V + S I L E+ S Sbjct: 169 YRLLYLKNEKNCHVEK--EISIPMDTINVICKLLKDSEKEVIIGFSGENIILTWENAYFS 226 Query: 239 VRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + I FP+++ ++ S+ K + N L+ A+ RV ++ + A ++ K Sbjct: 227 SKTIALPFPDFKGILANSSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKT 286 Query: 298 TVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N GKA + +N+ N K+L E IDNIS + V+ SN+ Sbjct: 287 LLINAFSGKAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVI--------KGSNA 338 Query: 356 SVFIR----GKDKDSKNNKDNKVNAFYVLMPMRI 385 S GKD D K Y+LMP+ + Sbjct: 339 SSMFEITEIGKD-DYK----------YILMPLAL 361 >gi|220903290|ref|YP_002478602.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867589|gb|ACL47924.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 384 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 85/400 (21%), Positives = 176/400 (44%), Gaps = 42/400 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + I+E L A II K + L+A DG L + ++ IE TG A Sbjct: 1 MKLTVNKEQIIEGLLKAVAIIPAKAGAQYLRSIWLKAEDGGLSVMSTDANIEFTGRYQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 V G I V D+VR+L G + +E + + G + + Q+ Sbjct: 61 VAQPGLIGVQGRAFVDLVRQLPSG--VLHLSLDEASGNLLVEQGRRTYKLPVSGAEWFQN 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F S FP EE ++ + L++L+++ F ++ ++ + + + + ++ Sbjct: 119 F--SSFP----EENTVTW--SGDFLQDLLDKVAFCISDDDAMDAI-ACLCMMPKGNGRID 169 Query: 173 AVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +GH+ A+ D +A+ I++ +K + +I + L + +++S++ R++L Sbjct: 170 VCGLNGHQFALVSFTHDELAERLPEEGILIQKKYLQDIKKWLGVDE--IELSITGKRLYL 227 Query: 231 NIESLSMSVRLIDG--EFPNYQ---NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 S + ++ L ++P+Y + + + + ++ +A+ R+ I ++ + Sbjct: 228 RSMSKAETLSLPRATHQYPDYSIFMSKLASEDMHPMTLDRKEAMEALGRILIFNTESDRC 287 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + LSS + ++ D+G A ES+ V Y I F + L++++ + V + Sbjct: 288 TYMDLSSGEALLSAQGQDVGSASESLEVTYGGDIKRIAFPTRNLMDVLAHF-----VSGK 342 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L + IRG D + D V ++MPM++ Sbjct: 343 TDMMLTGAEGPCGIRGAD-----DPDYTV----IIMPMKV 373 >gi|89097418|ref|ZP_01170307.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] gi|89087714|gb|EAR66826.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] Length = 392 Score = 70.1 bits (170), Expect = 5e-10, Method: Compositional matrix adjust. Identities = 81/397 (20%), Positives = 161/397 (40%), Gaps = 34/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ V I E + A RI ++ V+++A+ G L + + + + P Sbjct: 1 MEFKVNGESIFESISEAARIAGGSHSAAGKL-VMIEAHSGGLSVSSGNGDRSVIFEHPLI 59 Query: 59 ----ASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + +D+ G + +L +++RK+ ++S +N + + Sbjct: 60 NCRDSGLDILEYGKLAADGRMLSEVIRKIP--GRLSIKASTSHKILINSMDKQISAAIAG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +FP E+ Y + L +S L + T + A R L GI +E L Sbjct: 118 FPLDQFPDRAHVEFPYIYPLEASDLAAGLRNTAASAAKTSSRPILEGINLAFDENGLTF- 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLN 231 ATD RLA+ + D A ++ S +P + E+L+++ S + +S+S+ Sbjct: 177 -TATDSSRLAMWKADGSAGFSQ--SFTLPARNAAELLKLIGKSPSGEAAIYISDSQAVFA 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + L+ G FP+ + + P EL +N +L Q V R I + + ++ + Sbjct: 234 TSTFRFCSSLLTGRFPSSEKLKPEGCKTELVINRKHLLQGVKRTMIFAGEKRSSLVSIQA 293 Query: 292 SDKLCMTVDNP--DMG--KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 D+ +T+ +P +MG + ++ + E N YL + + S + + Sbjct: 294 KDENSITISSPMSEMGMIEEVQELQSIRGETEASAVINGSYLADALIGTES-----EYIK 348 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 RL + + I + + N F+++ P+R Sbjct: 349 IRLYGTMKPILI---------SSPGEANYFHLISPVR 376 >gi|46204942|ref|ZP_00049263.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 113 Score = 70.1 bits (170), Expect = 6e-10, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +TV+R +L L RI+ER+NTIP+ +V L L ++ + +IE A+ Sbjct: 1 MLLTVQREALLRPLAVTHRIVERRNTIPILSNVRLGTEGTTLTVRGTDLDIEAASTCEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +D G++TV A L DIV KL GA+I+ ++ G ++ +S G + F L + P Sbjct: 61 IDEPGALTVPAQTLRDIVHKLPQGAEITLRQDAGSG-QLALSAGRARFKLPTLP 113 >gi|227496604|ref|ZP_03926882.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM 15434] gi|226833884|gb|EEH66267.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM 15434] Length = 377 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 92/398 (23%), Positives = 168/398 (42%), Gaps = 38/398 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + E + R + + +PV V L+A++ L + + E+ IPA Sbjct: 1 MKLRVDRDVLAEAVTWTARSVPARPPVPVLAGVRLEASNASLVLASFDYEVSAHCEIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G + VS LL DI + L K +L GT+V +S G S F L + + Sbjct: 61 VEEEGVVLVSGRLLADIAKALPS-------KPVDLEVEGTKVTVSCGSSRFALAAMAAED 113 Query: 118 FPS----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P+ V + +LA + V + A + +E L + ++ + L L Sbjct: 114 YPTLPVMPSTAGTVDAHDLAQA-----VAQVSIAASRDETLPLLTSVQMEVDGDRLTL-- 166 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESR----- 227 +ATD +RLAV E+ +Q + + ++ + + ++ + L+S V V+L+E+ Sbjct: 167 MATDRYRLAVREMTWASQDKTLSTHALLKARTLSDVAKSLTST-GDVTVALTEAGSTTSG 225 Query: 228 -IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 I + L DG++P + P V L AV RVS+++ R + Sbjct: 226 LIGFEAGGRRTTSLLTDGDYPPVLRLFPEETSIHATVGREELMAAVRRVSLVAD-RSTPI 284 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +S + L + + +A E + + + FN YLL+ + I V D Sbjct: 285 HMSFTQGSLALDAGAGEDAQASEQLVAHLEGEDISTAFNPGYLLDGLGAIHQPYVTLD-- 342 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + G D + ++ Y++MP+R Sbjct: 343 ---FTHPSKPAVLTGVD---SIGGEKDLSFRYLIMPIR 374 >gi|313635498|gb|EFS01734.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067] Length = 175 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 13/178 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E L Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKENKL 174 >gi|21233713|ref|NP_640011.1| DNA polymerase III beta chain [Proteus vulgaris] gi|21202897|dbj|BAB93613.1| DNA polymerase III beta chain [Proteus vulgaris] Length = 422 Score = 69.7 bits (169), Expect = 7e-10, Method: Compositional matrix adjust. Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 20/165 (12%) Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV---- 183 YS +++L ++R + ++R+Y+NG+F +++ AVATDGHR++V Sbjct: 150 YSITFPANMLHRTLQRVMHSAGKNDVRHYMNGVFLSLDKNVFN--AVATDGHRMSVMTED 207 Query: 184 ------AEVDIVAQIAKMP------SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 + DI + +A + +I+P + ++++L++ S ++ SES + N Sbjct: 208 VLFTDEPQEDITSPVAPVSLSGTSSGVILPIEVCPILMKLLAANKGSFRMDYSESYLTFN 267 Query: 232 IESLSMSVRLIDGEFPNYQNV--IPCSNDKELRVNCTNLRQAVDR 274 + +++ LI+G +P+++ V + N ++ VN LR+A+ R Sbjct: 268 LGDVTVVSNLINGRYPDWRRVAGVVKHNTEKFSVNALVLREALSR 312 >gi|227876543|ref|ZP_03994654.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243] gi|306817504|ref|ZP_07451248.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35239] gi|227842857|gb|EEJ53055.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243] gi|304649728|gb|EFM47009.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35239] Length = 352 Score = 69.7 bits (169), Expect = 8e-10, Method: Compositional matrix adjust. Identities = 75/329 (22%), Positives = 150/329 (45%), Gaps = 25/329 (7%) Query: 65 GSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G++ V LL + R L + +++SF E+ ++I+ G + L PE ++P + Sbjct: 37 GTVVVDGKLLSETARALPNKISEVSFKTEDNY---LHITCGSFHQQLLVMPEEDYPQLPQ 93 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 V ++ + V + + + A + +E L GI I E KLC +ATD +R+A+ Sbjct: 94 LPQVVG-QVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDRYRMAL 150 Query: 184 AEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 E+ A ++ ++V K + + + ++S S+ +++ + LS RL Sbjct: 151 KEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAGGRLF 209 Query: 243 -----DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLC 296 DG +P+ + + P + V ++ A RV+I+S+ + Q + LS + L Sbjct: 210 TSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQGTLE 269 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNS 355 + A +++ V N + + FN + L+E + VVD+ V Sbjct: 270 FRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGL------SVVDEPYVRLSFKDETK 323 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ +++ D+ ++ Y++MP+R Sbjct: 324 PVIITGQKEET---GDDSLDFQYLIMPIR 349 >gi|261749644|ref|YP_003257330.1| DNA polymerase III subunit beta [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497737|gb|ACX84187.1| DNA polymerase III, beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 382 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 18/231 (7%) Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 L S +L ++ +T FA EEI+ +NG+FF + + VATD ++L + + Sbjct: 136 LFSKILLKILNKTLFATGNEEIKPVMNGVFFRFSPKGATF--VATDTYKLVKYTLKNIKS 193 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI-HLNIESLSMSVRLIDGEFPNYQ 250 + I+ RK++ + IL ++ SV + ++ I + E+ + LI+ ++P+Y Sbjct: 194 -NQYIEFIISRKSLRILKNILFNEKKSVTIEYKKTGILKFSFETKTFLCELINEKYPDYN 252 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG----- 305 +V P D +N ++ R+S+ S ++ +LS + L + +N + Sbjct: 253 SVFPKKKDISFIINRLFFLNSIKRISLFSKEETNFIRFNLSDNTLRIYEENTRISIFSKI 312 Query: 306 --KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 K I + +E + + FN K+L+EI+ + +D V F L SSN Sbjct: 313 RCKYIAEY--FRDESIIKMGFNSKFLIEILSSFK-----EDFVSFELYSSN 356 >gi|310780294|ref|YP_003968626.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] gi|309749617|gb|ADO84278.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] Length = 363 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 88/394 (22%), Positives = 174/394 (44%), Gaps = 42/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V R ++++LL + +I+ + PV L+A +G+ S E +IPA Sbjct: 1 MKIRVNREELIKLLSNLSVVIKENSIKPVISGTKLEAKNGMAVFTGSNLEFSFISSIPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP---ESE 117 ++ G L+ + ++ L+ EN ++ +S G + F E Sbjct: 61 IENEGVTVFKIPLILEYIKLLE--------VEN---LDITVSEGKLLIHRAEFSIMDWEE 109 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P K+ E FE+ S + + E+ F+ +N I ++ +L + ++TD Sbjct: 110 YPEIKQPESENIFEVESQEIISAFEKVKFSAFPTADNLAINCIRMACDDNELNM--ISTD 167 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS- 236 +RL ++ + +KM + +P ++V I ++L KDS K S L I+ + Sbjct: 168 SYRLTKYFLETPCK-SKM-EVSIPLESVNIICKLL--KDSEEKASFGVKNGILTIKKGNS 223 Query: 237 -MSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLS 291 MS RLI+ FP+Y+ + S K + +N + + ++ +V ++ I+ Sbjct: 224 FMSTRLIELPFPDYKTIFKNMSYTKNIELNTADFKGSMKKVLTVAKRNIETKNGAIFEFK 283 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++L TV + K ++ ++ N K++ + I NI + ++ Sbjct: 284 GNRLISTVSSGS-AKTVQKIDTIKEGEDFKASLNVKFVYDFISNIQKNILIK-------A 335 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++SS+FI + NK+ K Y+LMP+ + Sbjct: 336 TNSSSMFIM----EEAGNKNYK----YILMPLAL 361 >gi|255039230|ref|YP_003089851.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] gi|254951986|gb|ACT96686.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] Length = 382 Score = 69.3 bits (168), Expect = 9e-10, Method: Compositional matrix adjust. Identities = 78/344 (22%), Positives = 158/344 (45%), Gaps = 17/344 (4%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 +VE +D+ L +++ IP+ ++L L E+ +G + T + S+ Sbjct: 11 SVETADLKRALHLFAKVVREAPLIPILDNILFSFE--LDELHLTGSNLITT--VFTSIQA 66 Query: 64 CGSITVSAHLL-YDIVR---KLQDGAQISF--FKENELGTEVNISHGDSNFYLQSFPE-S 116 GS TV LL Y ++ L +I+F + ++GTEV ++ F S + Sbjct: 67 DGSSTVGKFLLPYRQIKALVSLSPAGKIAFRAVESEDVGTEVMVTTEYGEFKFSSLEKIG 126 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ + F + L+ ++ T ++T+E+R L GI+F E +K ++T Sbjct: 127 DYPALSWSP-ISHFNIGMDELREGMKLTRKTVSTDELRPPLTGIYFDTAEGCIKF--IST 183 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS-LSESRIHLNIESL 235 DGH+L E A + +P I+P ++ + K ++V L +++ N S Sbjct: 184 DGHKLTKYETSEPAVESILP-FILPANFADFVISNTALKQNAVSFGCLPGAKVVANFGSC 242 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + VR ID FPNY+ IP + + ++++ ++ + + S+ + S+ +L Sbjct: 243 VVLVRCIDEFFPNYKAAIPEAFEHAVQLDLAQIKTRIQLGLLFSNRATTQMAFVFSNGRL 302 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + ++ D G K+ +S+ + + I FN +++ I+ S Sbjct: 303 SLESEDFDYGMKSKQSLEMEQPVPELKIGFNVRFMSTILAPFSG 346 >gi|218848051|ref|YP_002454851.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|218546182|gb|ACK98575.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] Length = 379 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 85/402 (21%), Positives = 180/402 (44%), Gaps = 41/402 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ + ++L L + R T+P+ C + L+A L + AS E I I + Sbjct: 1 MEFTINKQELLNNLVKVGKYSARSTTLPILCGIYLKATSNELLLVASNKEDTIVSTISET 60 Query: 61 VD---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + V V + DIV+KL D +SF +N ++IS G +N+ L + + Sbjct: 61 NNFNIVQEGEVVVPKTITDIVKKLPDDT-VSFTLDN--NNSLHISSGKTNYSLNTLSADD 117 Query: 118 FP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +P +TK +++ + L L+ VE TH+ A + L GI I +++ A Sbjct: 118 YPDFTTKTLKFLVTISLKK--LQRSVEATHYCAAENHSKPQLKGIEISITNKEIAFA--A 173 Query: 176 TDGHRLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 TD + L+ + + I + + S IVP K + + +++ ++ + + + L Sbjct: 174 TDANTLSRSTIPITTDNNIEEKLLYSCIVPSKWLYDAIKMFEEEEIELGFEGNSAI--LR 231 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR--QAVDRVSIMSSVR----IQA 285 + L + ++I+G++P+ + + ++ L+ ++++V+++ S+ Sbjct: 232 SKDLHIKTQIIEGKYPDVVKFMEFEKKVKTTISTDRLQLINSLEQVNVICSMNNPKSAAL 291 Query: 286 VKLSLSSDKLCMTVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 +KL L+S + ++ +N +G I + + P+ I F+ Y+L + ++ D Sbjct: 292 LKLELNSKEFSLSNNNKSLGDVIVKNPIEIDGETIPISIGFSIDYMLRHLKSMQ-----D 346 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D V + S + R + + F +++P+RI Sbjct: 347 DVVKIGFIAEQSPLIFRNMNTED----------FKLMLPIRI 378 >gi|328885264|emb|CCA58503.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC 10712] Length = 376 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 79/360 (21%), Positives = 145/360 (40%), Gaps = 45/360 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + E + A R++ ++ +PV +LL+A DG L + E + A Sbjct: 11 MEFRIDSGVLTEAVAWAARVLPARSPMPVLGGLLLEATDGGLRVSGLDHEASARVEVEAD 70 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V G V L DI + L G EL G ++++ GD+ F L P + Sbjct: 71 TAVEGRALVLGRRLLDICKVLPRGV-------TELAVEGARLSVTSGDARFGLSLLPLED 123 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ V ++ V + A ++ L GI ++ + L ATD Sbjct: 124 YPAPPALPEVRG-QVDGDAFAAAVGQVAVAAGRDDSLPVLTGIRLALDGTTMTLA--ATD 180 Query: 178 GHRLAVAEVDIVAQI-AKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 +R AV ++ + P+ ++VP K + EI R L+ + +++L + + L Sbjct: 181 RYRYAVRTLEWKPEAGGGTPADVVVPAKRLTEIARSLAGAGPA-RLALDDGSVGFESGGL 239 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSL- 290 + RL+DG P + + + L +AV RV+++ S V++ SL Sbjct: 240 RTTTRLLDGRLPRHDKLFALGDPALATTARAPLTEAVKRVAVVAEGDSPVQLAFTPTSLH 299 Query: 291 ---------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 +S +L T+ D + + FN YLL+ + + + EV Sbjct: 300 LQAGYEDDIASQRLPATLTGADT---------------LTVAFNPGYLLDALTALDAPEV 344 >gi|213585141|ref|ZP_03366967.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 93 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 2/89 (2%) Query: 193 AKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 A +PS +IVPRK V E++R+L ++ ++V + + I ++ + +L+DG FP+Y+ Sbjct: 5 ASLPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYR 64 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 V+P + DK L C L+QA R +I+S Sbjct: 65 RVLPKNPDKHLEAGCDILKQAFARAAILS 93 >gi|86739451|ref|YP_479851.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3] gi|86566313|gb|ABD10122.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3] Length = 433 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 89/368 (24%), Positives = 150/368 (40%), Gaps = 26/368 (7%) Query: 28 PVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87 P S L A +L I A E+ + + ASVD G + V LL DIVR L + Sbjct: 77 PGSAAPLGAATASVLTICAYDTEVAVRAPVAASVDEPGRVLVPGRLLTDIVRSLP-ATTV 135 Query: 88 SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147 + G + + G F + E+P E+ + + V + A Sbjct: 136 DVVVD---GDRLVLRCGSVRFTVPLMDPGEYPQLPSFPGPIG-EVDTLGFASAVGQVAPA 191 Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII-VPRKAVG 206 +E L + I+ L L VATD +RLAV + + ++ VP K + Sbjct: 192 AGRDETMPVLTAVRMEISGRGLAL--VATDRYRLAVRGIPWQPTVDDPWALAHVPAKVLA 249 Query: 207 EILRILSSKDSSVKVSL-----SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261 E+ R +S S + + L S +R+ L VRLI+G FPNY+ ++P L Sbjct: 250 EVARTPTSA-SRIVIGLDLDDPSGARLGLAAGGRQTIVRLIEGTFPNYRKLLP--EAAAL 306 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPM 320 V A + ++ + + +++ + +A E++ V Y + Sbjct: 307 VVTAQTAALAAAVRRVAVVATRTGPLRFTFTHNQVVAEAGDGGGAQASETIPVEYAGPEL 366 Query: 321 DICFNYKYLLEIIDNISSDEV----VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + FN YLL+ + + D+ VDD+ V +++ + G KDS ++ Sbjct: 367 SVLFNPSYLLDGLGAVEDDQATIGFVDDDPV---EAAAKPAVLTG--KDSGRGAVDEGAY 421 Query: 377 FYVLMPMR 384 Y+LMP+R Sbjct: 422 RYLLMPIR 429 >gi|288561735|ref|YP_003429141.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] gi|288548367|gb|ADC52249.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] Length = 373 Score = 69.3 bits (168), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 159/305 (52%), Gaps = 39/305 (12%) Query: 1 MKITVERSDILELLGHACRIIERKN------TIPVSC---HVLLQANDGLLEIKASGPEI 51 MK+TV + ++L+ + + I+ +I + +LL ++G+ I P + Sbjct: 1 MKLTVMKEELLKGIDAVSKAIKGSQQELVYKSIKIEATEKGILLTGSNGVFTIVRMIP-L 59 Query: 52 EITGAIPASVDVCGSITVSAHLLYDIVRKL--------QDGAQISFFKENELGTEVNISH 103 E G+ A++ G++ V+ +L + V+K+ Q+GA + F K + ++NI Sbjct: 60 EFKGSEIATLVNEGTVLVNGKILLEAVKKMPKEDIKIEQEGAVLKF-KSGKFQVKLNILT 118 Query: 104 GDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163 D +P+ E + SF L S+LK +++++ +A +T E R LNG+ Sbjct: 119 ED------------YPAPPEVDGA-SFTLEQSLLKQVLDQSVYACSTSEGRPILNGVKLS 165 Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 I++ + L +AT+ + ++ + D+ + +P+I++P + E+ +L++ + + K +L Sbjct: 166 IDQGIMNL--MATNSYIMSSLQKDLKNEELFLPNIVIPASPLNELQSLLATTEGT-KCTL 222 Query: 224 SESRIHLNI---ESLSM-SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + S HL I +L++ +RL++G++P + IP ++ +++ ++L +++RVS + Sbjct: 223 NCSEKHLLINISHNLTLVYIRLLEGQYPVDRQFIPKNHPIKVKSKRSDLFSSLERVSSLG 282 Query: 280 SVRIQ 284 S ++ Sbjct: 283 SEHVE 287 >gi|254304259|ref|ZP_04971617.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324451|gb|EDK89701.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 364 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 88/393 (22%), Positives = 177/393 (45%), Gaps = 39/393 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINRQKTIEIIGEYSNILKDNPVKPSLVGLFIQAKNNQVVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117 ++ G + + LL + + KL +G I+F +++ + S D N Y PE Sbjct: 61 IESEGQVLIKPALLLEYI-KLLEGENINFERKDGYLIVNNAEFSILDDNTY----PELTE 115 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P E F ++ +K L T+ + +T+ + + IF +D L V+T Sbjct: 116 IIPIVIASENTVKFTMSLEKVKFL---TNSSASTDTLFNSIKMIF-----KDNILELVST 167 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D RL + ++ I K I+VP ++G + +I D ++ S+ R+ + + Sbjct: 168 DSFRLIYMKKELNNTINK--DILVPGDSIGVLYKIFKDLDEEFSLAASDDRLIVTWKDAY 225 Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLSS 292 + +L+ FP+++++I +N DK N L A+ + V+ SS + Sbjct: 226 FTCKLLSLSFPDFRSLINNTNHDKRFEFNREELNLALKKVISVTKNSSDSKNVATFNFKG 285 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++L ++ + + K + +N+ + + + N KY+ E IDN VD ++ +D+ Sbjct: 286 NQLLISGVSAN-AKINQKVNMIKSGEDLKLGMNCKYIKEFIDN------VDKNII--IDA 336 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +NSS +R ++ ++ N Y++MP+ I Sbjct: 337 TNSSSMLRFMEEGNE-------NYIYLIMPVNI 362 >gi|260889707|ref|ZP_05900970.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254] gi|260860313|gb|EEX74813.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254] Length = 375 Score = 68.9 bits (167), Expect = 1e-09, Method: Compositional matrix adjust. Identities = 80/390 (20%), Positives = 168/390 (43%), Gaps = 28/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + I V+R +L+ + + V + ++ N+G ++ + E+ I I A Sbjct: 2 LHIIVDRKSLLKAITIVENAVTENKIREVLSGIYIETNEGKAILRGTDLELSINTEIEAQ 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I + L+ + ++++ D +I+ +EN ++ I +N + FP Sbjct: 62 VEDEGKIVIKHKLIEEFLKQISD-EKITLIEEN---GKLVIQASSTNTEFSLYDAGNFPV 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + L N +E + + +N I I E+ LKL V++D +R Sbjct: 118 QSKLENGVEYVFEKEKLLNNIENVKISASPNPENLAVNCIRLEIEEDKLKL--VSSDTYR 175 Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 L E D+ Q + S+ +P K + +++I+ D ++ V S++ ++ + Sbjct: 176 LTYIEEDLDETQQGKENLSLSIPLKTIDGLIKIMKLIDEENITVKSDGSKVFFQFSNVEI 235 Query: 238 SVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSLSSD 293 R ID +FP+Y++++ S ++K++ +N + + R +I +A + +++ Sbjct: 236 LTRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLRRTAIFVRDNKEAKNGGIFNFANN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 KL +T + + E + + I N ++LL+ I I V L ++ Sbjct: 296 KLLLT-GTSENAQIKEEIVTIQEGADLKISLNVRFLLDYISTIEG-----KVTVLELLNN 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 SV +R +D D + Y MP+ Sbjct: 350 KGSVIVRDEDNDK---------SLYFTMPL 370 >gi|113473946|ref|YP_720007.1| DNA polymerase III subunit beta [Trichodesmium erythraeum IMS101] gi|110164994|gb|ABG49534.1| DNA polymerase III, beta subunit [Trichodesmium erythraeum IMS101] Length = 200 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 47/194 (24%), Positives = 101/194 (52%), Gaps = 24/194 (12%) Query: 200 VPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +P KA+ E+ R++S SSV + E+++ + ++ R ++G++P YQ ++P Sbjct: 21 IPAKALREVERMISMGKSGSSVTLKFDENQVIFELGKQRLTSRKLEGQYPAYQQLLPNQF 80 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYY 315 ++ V+ AV+R+++++ + +K ++ S ++ ++VD D+G ESM Sbjct: 81 TNQINVDRKKFLGAVERIAVLADQKNNILKCTIDSVNQEISLSVDAQDVGSGRESMAAQI 140 Query: 316 -NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 ++ P +I FN KYL+E + I S E+ +L+++ + V + N + Sbjct: 141 SSDEPEEIAFNVKYLIEGLKAIPS----ASEISIQLNTATTPVVL------------NPL 184 Query: 375 NAF---YVLMPMRI 385 F Y++MP+++ Sbjct: 185 GGFQMTYLIMPVQL 198 >gi|330947989|gb|EGH48301.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 112 Score = 68.6 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 33/107 (30%), Positives = 65/107 (60%) Query: 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 R+L+ +D +V + L + I + + +L+DG+FP+Y+ V+P DK + + LR Sbjct: 2 RLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALR 61 Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 +A R +I+S+ + + ++L L+S +L + +NP+ +A E ++V YN Sbjct: 62 EAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYN 108 >gi|237745013|ref|ZP_04575494.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] gi|229432242|gb|EEO42454.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] Length = 381 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 99/413 (23%), Positives = 179/413 (43%), Gaps = 62/413 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R + L + + ++ P+ + + D +I +G ++ T I S Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDN--KIYFTGTNLDTT--IKTS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107 +DV G I S ++ + +++++D I F + + TE ++ Sbjct: 57 IDVDEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113 Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161 + +P + F + E + FE+ S L N+ E+ F+ T + IR + I Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNIAMNCIR--IESIL 167 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220 H L V+T+ +RL + +I I+ S+ VP + I++I+ D+ V K Sbjct: 168 KH-------LHFVSTNTYRLTFLKKNIDKDISDF-SVSVPADTISSIIKIIKGLDNEVIK 219 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279 V E+ ++ + + +LI+ FPNY ++ S DK+L +N L + R+ I S Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279 Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 ++ S +K MT+ ++ + E ++V + + I N KYLLE Sbjct: 280 RSNSESKYSSTYEFKHNEKNKGIMTISALNEIARINEELDVNFEGEDLKISLNSKYLLEF 339 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I NIS ++ E+V SNS+V + KD D Y+LMP+ + Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|303246809|ref|ZP_07333086.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ] gi|302491826|gb|EFL51706.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ] Length = 396 Score = 68.6 bits (166), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 86/414 (20%), Positives = 179/414 (43%), Gaps = 59/414 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V R+DI++ L + II K + L+A +L I ++ +E TG A Sbjct: 1 MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAAGDVLRILSTDSSLEFTGQYAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 V G V +++VRKL G +I + E G + I G + + Q+ Sbjct: 61 VTEEGLCGVQGKSFFELVRKLPPG-EIGLTLDAESGN-LLIKQGSRRYKLPVSDRNWFQN 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKL 171 F S FP EE ++ + L+ L++R + ++ E+ + +F +E +++ Sbjct: 119 F--SPFP----EEGAVTW--SGDFLQELIDRVAYCISDEDTMEAMACMFLKPADEAKVEV 170 Query: 172 CAVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 C + +GH+ ++ D + + I++ +K V E+ R L++ + +++++S+ R+ Sbjct: 171 CGL--NGHQFSLVGFLNDDIHTMLPAEGILIQKKYVAELKRWLTADE--IELAISQKRLF 226 Query: 230 L--------------NIESLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAV 272 IE+ S+ + ++P+Y + L +N L A+ Sbjct: 227 FRTQEKDPENEAATPKIETFSLPLSYY--QYPDYNTFVSKLATDGVSTLAINRDELMDAL 284 Query: 273 DRVSIMSSVRIQ-AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 +RV+I ++ + A L ++L + + G+A E++ + + F K LL+ Sbjct: 285 ERVAIFNTDNNRCAYFLFDGPNELSLRSQGQEAGEATETLECAFTGSLDKVAFPTKDLLD 344 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + S +V + + I G++ + ++MPM+I Sbjct: 345 ILGHFHS-----PKVTLAMTGAEGPCGITGEEDG---------DGLVIIMPMKI 384 >gi|269114779|ref|YP_003302542.1| DNA polymerase III subunit beta [Mycoplasma hominis] gi|268322404|emb|CAX37139.1| DNA polymerase III beta chain [Mycoplasma hominis ATCC 23114] Length = 365 Score = 68.2 bits (165), Expect = 2e-09, Method: Compositional matrix adjust. Identities = 74/340 (21%), Positives = 158/340 (46%), Gaps = 20/340 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI----EITGA 56 MK+ +++ + + + ++ +PV +L+QA D + + S E EI + Sbjct: 1 MKLKIDKLLLDNAIERVSKSVDANPFLPVMKGILIQAEDNKITLIGSNGETSIKHEIETS 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 I A +++ G + V L +I++KL DG + N L IS + N+ L + + Sbjct: 61 IDAQIELPGIVLVELSLFKNIIKKL-DGEIVLEVVNNILK----ISTNNENYNLNIYDVN 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+ + Y ++ + K+LV FA +T E+ L + +I+ + K+ + T Sbjct: 116 EYIAIDFACYGEQVKINWNDFKSLVRDVIFAASTNEVSLILCCV--NISAANKKIKFITT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIES 234 D R A A DI + SI+ LR +++ D V +++S+ +I ++S Sbjct: 174 DRFRYAQAVQDISEDVTFNISILAKN------LRDITNFDYNGDVILNISDQKISFKLDS 227 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ +++D + + ++P D EL++ L +++ S++ + +KL + + Sbjct: 228 TTIESKVVDQLYQDVSRIVPQEFDTELKITKKELNNLLNKASVIINENYNKIKLHIVDNV 287 Query: 295 LCMTVDNPDMGKA-IESMNVYYNECPMDICFNYKYLLEII 333 L ++ ++ A I++ N YN + + N ++L + I Sbjct: 288 LTISSAREEIANAEIKTNNFSYNGEELKLALNSRFLKDAI 327 >gi|68171371|ref|ZP_00544765.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] gi|67999196|gb|EAM85852.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] Length = 113 Score = 67.8 bits (164), Expect = 3e-09, Method: Compositional matrix adjust. Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 4/111 (3%) Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 + +T FA++ EE R+ LNG+ H++ + LC ATDGHRL++ ++ + II Sbjct: 1 MFGKTKFAISIEESRFNLNGL--HVHTSNNILCCAATDGHRLSLTKLSQSQNVLSNFGII 58 Query: 200 VPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 VP+K V EIL+I+S S + + +SLS+ +I + + ++ID F + Sbjct: 59 VPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTFAS 109 >gi|302561988|ref|ZP_07314330.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000] gi|302479606|gb|EFL42699.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000] Length = 365 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 28/274 (10%) Query: 115 ESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + E P T EE L+ S L ++ FA T+ L GI F + ED LC Sbjct: 115 DRENPMTSLSEETAVRLSLSGSALAAALDAVRFAAGTDPGLPMLGGILFDV--EDGALCL 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD +R+AVA+ + VP + + +R L D V++S+ R+ L Sbjct: 173 VATDRYRMAVAQAAAEGPAGSRVRVTVP-LPLADAMRALLEGDDPVRLSVDGDRVTLETG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQ-AVKLSLS 291 + + + +FP+Y+ ++ + V+ R+AV + + VR Q L+ Sbjct: 232 DRQTAGQCLGHDFPDYRRLVRLPAGRRAPVDVPAFREAVRTGPVRTGEVREQDGAPCDLT 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ G E ++ + N +LLE + + D +V + Sbjct: 292 VLEVAADGSVAPAGDGAEGRDL--------VAVNRDFLLEALPAGAG-----DRLVLEIG 338 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + IR + + + F +LMP+R+ Sbjct: 339 DPTAPLAIR---------RPDDADTFSILMPVRL 363 >gi|19551252|ref|NP_599254.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC 13032] gi|62388895|ref|YP_224297.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC 13032] gi|145294045|ref|YP_001136866.1| DNA polymerase III subunit beta [Corynebacterium glutamicum R] gi|21322767|dbj|BAB97396.1| DNA polymerase III beta subunit [Corynebacterium glutamicum ATCC 13032] gi|41324228|emb|CAF18568.1| DNA POLYMERASE III, BETA SUBUNIT [Corynebacterium glutamicum ATCC 13032] gi|140843965|dbj|BAF52964.1| hypothetical protein [Corynebacterium glutamicum R] Length = 394 Score = 67.4 bits (163), Expect = 4e-09, Method: Compositional matrix adjust. Identities = 88/396 (22%), Positives = 168/396 (42%), Gaps = 28/396 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 V R D++ + R + K T PV +L+ A+D LE+ ++ + A V Sbjct: 10 VAREDLVTAVAWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYDVSTRVRLSAEVSQP 69 Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I V+ LL +I L + + F + G++ ++ G S F L P ++P + Sbjct: 70 GRIAVAGKLLSEITGSLPN-KPVDFRID---GSKAFVTCGSSRFELPLIPLDDYPMLPKL 125 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + + + + V + A ++ L G+ I + L ATD RLA+ Sbjct: 126 P-AGTGSINAKLFTEAVSQVASAAGKDDSLPMLTGVSMEIVGNQINLA--ATDRFRLALR 182 Query: 185 EVDIVAQIAKMP-SIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIESL 235 + A ++ +++P + + + R L S + S+ +++ E ++ ++ Sbjct: 183 TFEWEANDPELNVKLLIPARTLLDNARSLDSGLNDSIDIAVGTGDQVGREGLFGVHTDNR 242 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL+D +FPN ++P + V L A+ RVS+++ Q V L S ++ Sbjct: 243 ETTTRLLDADFPNIAPLLPKEHTAIASVEIAPLVDAIRRVSLVAERNAQIV-LHFSEGQV 301 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSN 354 +T + G A E++ + + I FN YL D +S V VF + S Sbjct: 302 ILTAGATEAGHAEETLPCAFTGKELTIAFNPGYLK---DGLSV--VPTSRAVFGFTEPSR 356 Query: 355 SSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385 ++ I ++ N++ Y+LMP+R+ Sbjct: 357 PAIMIPEPEEMPSANENGIFQTPDTYFTYLLMPVRL 392 >gi|325066320|ref|ZP_08124993.1| DNA polymerase III subunit beta [Actinomyces oris K20] gi|326772842|ref|ZP_08232126.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505] gi|326637474|gb|EGE38376.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505] Length = 376 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 92/394 (23%), Positives = 168/394 (42%), Gaps = 31/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + E + R + + +PV V L+A L + + E+ + A Sbjct: 1 MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 V+ G + VS LL DI + L + K +L G +V +S G + F L + + Sbjct: 61 VEEDGVVLVSGRLLADIAKALPN-------KPVDLEVEGNKVAVSCGSARFSLAAMAADD 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ V + + + L V + A + ++ L + I E L +ATD Sbjct: 114 YPALPVMPAV-AGTIDAHDLARAVGQVSIAASRDDTLPLLTSV--QIEVEGSSLVLMATD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRIL-SSKDSSV---KVSLSESRIHLNI 232 +RLA+ E+ ++ + ++ + + ++ + L SS D +V S + S I Sbjct: 171 RYRLAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEA 230 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + L DG++P + + P S V L AV RVS+++ R + +S + Sbjct: 231 GGRRTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVAD-RSTPIHMSFTQ 289 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L + D +A E + + + FN YLL+ + ++ V RLD Sbjct: 290 GNLELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALNQPYV-------RLDF 342 Query: 353 SNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +++S + G D +D+ Y+LMP+R Sbjct: 343 THASKPAVLTGMDS-IGGTEDSSFR--YLLMPIR 373 >gi|218291395|ref|ZP_03495338.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1] gi|218238750|gb|EED05966.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1] Length = 249 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 8/220 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ + L RI + + V VL++A G + + A ++ + + AS Sbjct: 1 MRCLMEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGRVTLSAYDYDVALRMTVEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A L ++VR+L G I+ + L +++ G ++ L F +EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDV--GTTHAELHGFDPAEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDG 178 + + E+++ L ++ +A A ++ R L G++ + ED KL +ATDG Sbjct: 119 VLPDMTGIAPVEISAKTLVEAIQSVGYAAAKQDASRPILEGVY--VGYEDGKLIWMATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218 RLA + +++ +I PR+A+ E+ R+L + D + Sbjct: 177 LRLAKVSQTVDREMSIRCTI--PRRALTELTRLLDADDDA 214 >gi|303326104|ref|ZP_07356547.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3] gi|302864020|gb|EFL86951.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3] Length = 384 Score = 67.0 bits (162), Expect = 5e-09, Method: Compositional matrix adjust. Identities = 88/401 (21%), Positives = 179/401 (44%), Gaps = 44/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + I+E L A II K + L+A +G L + ++ IE TG PA Sbjct: 1 MKLTVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEEGSLAVMSTDANIEFTGRYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN------ELGTEVNISHGDSNFYLQSFP 114 V G I V D+VR+L G E E G V + + Q+F Sbjct: 61 VSQPGLIGVQGRAFVDLVRQLPTGVLNLTLDEASGNLLLEQGRRVYKLPVSGSEWFQNF- 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCA 173 SEFP + F L++++++ F ++ ++ + + E + +C Sbjct: 120 -SEFPVENAVTWSGDF------LQDVLDKVAFCISDDDAMDAIACLCMKPGENGHIDVCG 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL- 230 + +GH+ A+ A++P+ +++ +K + +I + L + + +++++++ R++L Sbjct: 173 L--NGHQFALVSFTHDDLAARLPAEGMLIQKKYLQDIKKWLGADE--IELNITDKRLYLR 228 Query: 231 ---NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD---RVSIMSSVRIQ 284 E+LS+ E+P+Y + D+ + + ++ +D R+ I ++ + Sbjct: 229 SLDGAETLSLPRAAY--EYPDYNIFMGKLADEGVNSMTLDRKEGMDALGRILIFNTESDR 286 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + LS+++ ++ D+G A ES+ V Y I F + LL+++ + V Sbjct: 287 CTYMDLSANEARLSAQGQDVGSASESLEVAYKGDIARIAFPTRNLLDVLGHF-----VSA 341 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ L + IRG + + D V ++MPM++ Sbjct: 342 KIDMLLTGTEGPCGIRGPE-----DPDYTV----IIMPMKV 373 >gi|392772|gb|AAC43045.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15] Length = 96 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 32/96 (33%), Positives = 59/96 (61%) Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +IVPRK + E R++ S +V + +S ++ + +++ ++IDG FP+Y VIP N Sbjct: 1 VIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALTSKVIDGAFPDYMRVIPRDN 60 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 K L ++ +AVDRV+ +S+ + ++VKL++ D Sbjct: 61 AKILTLDNDLFAKAVDRVANISAEKSRSVKLAVEPD 96 >gi|126658731|ref|ZP_01729876.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] gi|126619993|gb|EAZ90717.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] Length = 391 Score = 66.6 bits (161), Expect = 6e-09, Method: Compositional matrix adjust. Identities = 87/416 (20%), Positives = 180/416 (43%), Gaps = 59/416 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M I+ + +++ L A ++I T + +V+L+A +L+++A +I ++ + A Sbjct: 1 MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQS 112 +++ G + V+ ++ L+D I+ + E G E + GD ++ Sbjct: 61 NINTPGEVAVNCKDFLTLLNTLKDEVAITLSADEEYLHLKSQQGKEAKFAKGD----IEE 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKL 171 P + + EE + + + L VE T +A+ATE + L G+ + + +E+ + Sbjct: 117 MP---WIDSLTEEEIEQVSIEADDLIQAVEETKYAVATEMAKAILCGVCLNFDTDEENTV 173 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSS------VKVSL 223 ATDGHRLA V + P +++P + + L ++S V +S Sbjct: 174 EFAATDGHRLARTRV-LYEPSENNPENKLVMPTETLTLTAYALKQMETSEEIAEMVTISF 232 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT-NLRQAVDRVSIMSSVR 282 E++I ++ + R +DG++P+Y+ +I N + ++CT N +Q ++ + + + Sbjct: 233 DENKIQVDFSEGFIRSRKLDGKYPDYEMLI---NGDDFSLDCTFNRKQLLEALKFIDT-- 287 Query: 283 IQAVKLSLSSDKLCMTVDNPD------------MGKAIESMNVY-YNECPMDICFNYKYL 329 ++ D LC +P+ G A +++ V N + FN YL Sbjct: 288 -----FAVGKDSLCFIDFDPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNSNYL 342 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + D V E+ VFI + + F ++MP++I Sbjct: 343 KQCLKAMPGD-TVTMEITETTGDQPGPVFISPLE---------EYKTFGLVMPIQI 388 >gi|320532812|ref|ZP_08033589.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134963|gb|EFW27134.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 376 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 91/393 (23%), Positives = 169/393 (43%), Gaps = 29/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + E + R + + +PV V L+A L + + E+ + A Sbjct: 1 MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117 ++ G + VS LL DI + L + K +L G +V +S G + F L + + Sbjct: 61 IEEDGVVLVSGRLLADIAKALPN-------KPVDLEVEGNKVAVSCGSARFSLAAMAADD 113 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ V + + + L V + A + ++ L + I E L +ATD Sbjct: 114 YPALPVMPTV-AGTIDAHDLARAVGQVSIAASRDDTLPLLTSV--QIEVEGSSLVLMATD 170 Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRIL-SSKDSSV---KVSLSESRIHLNI 232 +RLA+ E+ ++ + ++ + + ++ + L SS D +V S + S I Sbjct: 171 RYRLAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEA 230 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + L DG++P + + P S V L AV RVS+++ R + +S + Sbjct: 231 GGRRTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVAD-RSTPIHMSFTQ 289 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L + D +A E + + + FN YLL+ + ++ V RLD Sbjct: 290 GNLELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALNQPYV-------RLDF 342 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384 +++S DS ++ ++F Y+LMP+R Sbjct: 343 THASKPAVLTGMDSIGGTED--SSFRYLLMPIR 373 >gi|255021959|ref|ZP_05293967.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254968595|gb|EET26149.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 401 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 75/348 (21%), Positives = 142/348 (40%), Gaps = 50/348 (14%) Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 A L I + L DGA + F G + I G S F L + +++P E Sbjct: 69 ARDLERIAKSLPDGALVEF------GEQGQIRCGRSRFRLPVYDGAQYPVKAEPLPSAWI 122 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAV-ATDGHRLA---- 182 + + L+ + +A + R YLNGI + I E++ L + ATDGHR A Sbjct: 123 RVQTQDLERIFPSLRRCVAKNDTRTYLNGIHWQIRRVGEQEASLLVLEATDGHRAARFSL 182 Query: 183 --------------VAEVDIVAQIAKMPS---IIVPRKAVGEILRIL-SSKDSSVKVSLS 224 ++ D Q P I+P + + +++L S K + ++ + Sbjct: 183 EYTPPLDSANDDSAASQGDCSPQGDCSPQGLDAILPVEGLSAWMKLLYSQKIAEFSIAQT 242 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVR 282 S + L + + +DG +P+ ++ ++ L ++ + ++A+ +I Sbjct: 243 RSGVIFQGGGLRLWLTSLDGRYPSLDTILAQLEKRKDVLSLSIADFQRALTLATIGVG-E 301 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNI----- 336 QAV LS + D L + +A + + + P+ FN +YL++ +D++ Sbjct: 302 SQAVTLSTAPDHLLSVAAKGEERQAEDQIPAQWSGSLPLRYSFNVQYLMDFVDSVKETTK 361 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S++ D ++ R D S +KD + V+MP+R Sbjct: 362 GSEDTEDPQMALRFDVS---------EKDPTSTFAEVPGGVLVVMPIR 400 >gi|260494790|ref|ZP_05814920.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] gi|260197952|gb|EEW95469.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] Length = 381 Score = 66.6 bits (161), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 62/413 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R + L + + ++ P+ + + D +I +G ++ T I S Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDN--KIYFTGTNLDTT--IKTS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107 +DV G I S ++ + +++++D I F + + TE ++ Sbjct: 57 IDVDEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113 Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161 + +P + F + E + FE+ S L N+ E+ F+ T + IR + I Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNIAMNCIR--IESIL 167 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220 H L V+T+ +RL + +I I S+ VP + I++I+ D+ V K Sbjct: 168 KH-------LHFVSTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDNEVIK 219 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279 V E+ ++ + + +LI+ FPNY ++ S DK+L +N L + R+ I S Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279 Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 ++ S +K MT+ ++ + E ++V + + I N KYLLE Sbjct: 280 RSNSESKYSSTYEFKHNEENKGTMTISALNEIARINEELDVNFEGEDLKISLNSKYLLEF 339 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I NIS ++ E+V SNS+V + K+ D Y+LMP+ + Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKNNDE---------YIYILMPLAL 379 >gi|313635491|gb|EFS01728.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067] Length = 196 Score = 66.2 bits (160), Expect = 7e-09, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 90/162 (55%), Gaps = 7/162 (4%) Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 E+ + I + +I++P K++ E+ +IL S++++L+ ++I ++ L RL++G Sbjct: 3 EIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLEG 62 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDNP 302 +P+ +IP EL +N QA+DR S+++ R +KL +L + ++ ++ ++P Sbjct: 63 SYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLITLDNGQVEVSSNSP 122 Query: 303 DMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 ++G E NV+ + + I FN KY+++ + D++ Sbjct: 123 EVGNVSE--NVFSQSFTGEEVKISFNGKYMMDALRAFEGDDI 162 >gi|332829045|gb|EGK01709.1| hypothetical protein HMPREF9455_01857 [Dysgonomonas gadei ATCC BAA-286] Length = 212 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 6/185 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 I++ +S++L L +II KNT+ + ++LL DG ++ A+ + I +I + Sbjct: 4 ISISKSELLNRLQSVSKIISPKNTLLIMDNILLNIQDGTVKFSATDTQGRINTSIDGILT 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D S+ + LL + ++ L + ++ +++ T + G F L FP Sbjct: 64 DNNISVCIEPKLLIEALKTLPE-QPLAISIDDKFSTTIKYKGG--KFELVGISPEGFPKE 120 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 K+ S + S VL N +E+T +T+++R + ++ I EE + VA+DGH+L Sbjct: 121 KDITNAKSISIPSKVLLNGIEKTILCASTDDLRPIMTSVYLSIAEEQINF--VASDGHKL 178 Query: 182 AVAEV 186 A+ E+ Sbjct: 179 ALLEI 183 >gi|237741560|ref|ZP_04572041.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|294785822|ref|ZP_06751110.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] gi|229429208|gb|EEO39420.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|294487536|gb|EFG34898.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] Length = 381 Score = 66.2 bits (160), Expect = 8e-09, Method: Compositional matrix adjust. Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 62/413 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R + L + + ++ P+ + + + +I +G ++ T I S Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107 +DV G I S ++ + +++++D I F + + TE ++ Sbjct: 57 IDVNEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113 Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161 + +P + F + E + FE+ S L N+ E+ F+ T + IR + I Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNIAMNCIR--IESIL 167 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220 H L ++T+ +RL + +I I S+ VP + I++I+ D+ V K Sbjct: 168 KH-------LHFISTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDNEVIK 219 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279 V E+ ++ + + +LI+ FPNY ++ S DK+L +N L + R+ I S Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279 Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 ++ S +K MTV ++ + E ++V + + I N KYLLE Sbjct: 280 RSNSESKYSSTYEFKHNEENKNKMTVSALNELARINEELDVNFEGEDLKISLNSKYLLEF 339 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I NIS ++ E+V SNS+V + KD D Y+LMP+ + Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|256844895|ref|ZP_05550353.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] gi|256718454|gb|EEU32009.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 381 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 62/413 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R + L + + ++ P+ + + + +I +G ++ T I S Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107 +DV G I S ++ + +++++D I F + + TE ++ Sbjct: 57 IDVNEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113 Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161 + +P + F + E + FE+ S L N+ E+ F+ T + IR + I Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQDLVNIFEKVLFSADTSDNIAMNCIR--IESIL 167 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220 H L ++T+ +RL + +I I S+ VP + I++I+ D+ V K Sbjct: 168 KH-------LHFISTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDNEVIK 219 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279 V E+ ++ + + +LI+ FPNY ++ S DK+L +N L + R+ I S Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279 Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 ++ S +K MTV ++ + E ++V + + I N KYLLE Sbjct: 280 RSNSESKYSSTYEFKHNEENKNKMTVSALNELARINEELDVNFEGEDLKISLNSKYLLEF 339 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I NIS ++ E+V SNS+V + KD D Y+LMP+ + Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|283852477|ref|ZP_06369745.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B] gi|283572085|gb|EFC20077.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B] Length = 392 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 81/418 (19%), Positives = 176/418 (42%), Gaps = 71/418 (16%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V R+DI++ L + II K + L+A DG+L I ++ +E TG A Sbjct: 1 MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAVDGVLRILSTDSSLEFTGQYTAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG---------------- 104 V G V +++VR+L G E+G ++ + G Sbjct: 61 VTEAGLCGVQGKSFFELVRRLPPG---------EIGLTLDAASGNLLIKQGSRRYKLPVS 111 Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164 D N++ Q+F S FP + F L+ L++R + ++ E+ + +F Sbjct: 112 DRNWF-QNF--SPFPEGAAVTWSGDF------LQELIDRVAYCISDEDTMEAMACMFLKP 162 Query: 165 NE-EDLKLCAVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV 221 E +++C + +GH+ ++ D + + I++ +K V E+ R L++ + +++ Sbjct: 163 AEAAKVEVCGL--NGHQFSLVAFLNDDIHAMLPPEGILIQKKYVAELKRWLTADE--IEL 218 Query: 222 SLSESRIHL----------NIESLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNL 268 ++S+ R+ +E+ S+ + ++P+Y + L ++ L Sbjct: 219 AISQKRLFFRTQEKDETSAKVETFSLPLSYY--QYPDYNTFVSKLATDGVSTLTIDRLEL 276 Query: 269 RQAVDRVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327 A++RV+I ++ + +L + + G+A E++ + + F K Sbjct: 277 VDALERVAIFNTDNNRCASFLFDGPGELSLRSQGQEAGEASETLECAFTGSLDKVAFPTK 336 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++I+ + S +V L + I G++ ++ ++MPM+I Sbjct: 337 DIIDILGHFHS-----PKVTLTLTGAEGPCGIAGEE---------DADSLVIIMPMKI 380 >gi|85057282|ref|YP_456198.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789387|gb|ABC65119.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 378 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 83/379 (21%), Positives = 169/379 (44%), Gaps = 27/379 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + + + LE L +I+ +K P+ + +Q + L ++A+ I I I Sbjct: 1 MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENKLILEANNGNIAIKIEIKDK 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFY-LQSFPE 115 + G I +I++K+ D +I+ + N L + + +F E Sbjct: 61 SLKIKKQGKIACLGRYFIEIIKKINDSLIKITVMENNFLVIKTIFCEYKLKLMDVCNFLE 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +F K + F++ + KN+++ + + + E R L G+ LK C A Sbjct: 121 LDFSFQKLD----FFQIETHFFKNIIKEVNISTSKNEKRPILMGLNLIYQNNLLKAC--A 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234 TD R++ ++++ + +I++P K++ E+ +IL + +K+ +I L I++ Sbjct: 175 TDFFRMSQKKINLDIKYHNF-NIVIPNKSLEELSKILEHCQSKHLKIYSDAQKIFLEIDN 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLS 291 L L++G +P Q + + + +N +L +A++RVS++ + +K L+ Sbjct: 234 LWFQTSLLEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFYKEQINTNVIKFILT 293 Query: 292 S-DKLCMTVDNPDMGKAIES---MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + + ++ + +G A+E + V N I FN KYL +++ +S EVV Sbjct: 294 ERNSIEISSSSESLGTALEKIIPLKVSANS--FQIAFNAKYLEDVLKVLSV-----KEVV 346 Query: 348 FRLDSSNSSVFIRGKDKDS 366 F D+ I +KDS Sbjct: 347 FYFDNPLKPFIITTLEKDS 365 >gi|94987228|ref|YP_595161.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia intracellularis PHE/MN1-00] gi|94731477|emb|CAJ54840.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia intracellularis PHE/MN1-00] Length = 383 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 44/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + I++ L II ++ + ++A L I A+ IE G A Sbjct: 1 MLLYINKEHIIDGLQKVANIIPARSGAAYLRTLWMKAEHSTLTIMATDANIEFIGNYEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ--------DGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G + V+ L D++R+L D + E E T + D ++ Sbjct: 61 IKETGLVGVNGRNLIDLIRRLPAKELCLRFDSTSGTLILEQERRT-YKMPINDPIWFQ-- 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171 P + FPS EE V+S + + +++R F ++ +E ++ ++ N+ + + Sbjct: 118 -PLTLFPS--EESVVWS----ADFFQEVIDRVSFCISDDEGSDAISCLYIQPSNDNYINV 170 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 C + +GH+ A+ K+PS I++P+K + E+ + L ++ ++++++E R Sbjct: 171 CGL--NGHQFALTRFINNELSEKIPSEGILIPKKYITELRKWLG--ETEIEIAITEKRFF 226 Query: 230 L-NIESL-SMSVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 I+S ++SV +P+Y + N L++ + +++DR+SI ++ + Sbjct: 227 ARTIDSKETISVPRAIFTYPDYTAFLTRLTGDNMSFLKLQRKDCLESLDRISIFNTEGDR 286 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + ++L ++ D G A E ++V Y I F K L+EI ++ S Sbjct: 287 CTYFDIKENELILSAQGQDTGSANEYLDVTYTGNINKIAFPTKSLMEIFNHFES-----P 341 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + S I G D+D KD V ++MPM+I Sbjct: 342 TITLAMSSVEGPCGITG-DED----KDYTV----IIMPMKI 373 >gi|239943012|ref|ZP_04694949.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|239989470|ref|ZP_04710134.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 11379] gi|291446484|ref|ZP_06585874.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|291349431|gb|EFE76335.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] Length = 383 Score = 65.9 bits (159), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 32/348 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ----ANDGLLEIKASGPEIEITGA 56 M+ +ERS + E + A R++ ++ +PV +LL A DG L I SG + E + Sbjct: 1 MEFRIERSALTEAVSWAARVLPVRSPVPVLGGLLLDTGSGAGDGRLRI--SGLDYEASAR 58 Query: 57 I--PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 I A V G + V L DI + L DG + G+ +S + F L P Sbjct: 59 IDVEAEVPRPGKVLVMGRRLLDICKVLPDGPVECAVE----GSRFTVSGDGARFGLSVLP 114 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P+ V + + + V A ++ L GI ++ + + L A Sbjct: 115 LDDYPALPPLPQVRG-AVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAA- 172 Query: 175 ATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 TD +R AV V A + ++V + + EI R L + V V+L Sbjct: 173 -TDRYRFAVRTVPWKATAPGESADVLVSARRLTEIARSLG-RSGLVSVALDAGSAGFEHA 230 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +VRL++G P ++ + + V+ L +AV RVS+++ R V+++ S Sbjct: 231 GMRTTVRLLEGRLPRHEKLFAMEDPAVAVVDRARLTEAVKRVSVVAD-RDSPVQMTFSRT 289 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECP--------MDICFNYKYLLEII 333 +T+ +A +V P + + FN YL + + Sbjct: 290 DASVTL------RAGYEDDVASQRLPAALEGAEELTVAFNPAYLADAL 331 >gi|172054952|ref|YP_001806279.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142] gi|171701233|gb|ACB54213.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142] Length = 391 Score = 65.5 bits (158), Expect = 1e-08, Method: Compositional matrix adjust. Identities = 88/419 (21%), Positives = 178/419 (42%), Gaps = 65/419 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M I+ + +++ L A ++I T + +V+L+A +L+++A +I ++ + A Sbjct: 1 MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQS 112 +++ G + V+ ++ L+D I+ + E G E + GD ++ Sbjct: 61 NINTPGEVAVNCKDFLTLLNSLKDEVAITLSSDEEYLYLKSQQGKEAKFAKGD----IEE 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKL 171 P + + EE + + + L VE T +A ATE + L G+ + + +E+ + Sbjct: 117 MP---WIDSLTEEEIEQVSIEADDLIQAVEETKYAAATEMTKAILCGVCLNFDTDEENTV 173 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSS------VKVSL 223 ATDGHRLA V + P +++P + + L ++S V +S Sbjct: 174 EFAATDGHRLARTRV-LYEPSENTPGNKLVMPTETLTLTTYALKQMETSEEIAEMVTISF 232 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 ES+I ++ + R +DG++P+Y+ +I N + ++CT R+ + + Sbjct: 233 DESKIQVDFSEGFIRSRKLDGKYPDYEMLI---NGDDFSLDCTFKRKQL----------L 279 Query: 284 QAVK----LSLSSDKLCMTVDNPD------------MGKAIESMNVY-YNECPMDICFNY 326 +A+K ++ D LC P+ G A +++ V N + FN Sbjct: 280 EALKFIDTFAVGKDSLCFIDFVPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNS 339 Query: 327 KYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 YL + + + D V E+ VF+ + + F ++MP++I Sbjct: 340 NYLKQCLKAMPGD-TVTMEITETTGDQPGPVFV---------SPSEEYKTFGLVMPIQI 388 >gi|19703871|ref|NP_603433.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329377|ref|ZP_06871877.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714031|gb|AAL94732.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153497|gb|EFG94315.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 381 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 104/420 (24%), Positives = 182/420 (43%), Gaps = 76/420 (18%) Query: 1 MKITVERSDILELLGHACRIIER---KNTIP--VSCHVLLQANDGLLEIKASGPEIEITG 55 M I V R + L A RI+E+ +N I +SC + K G +I TG Sbjct: 1 MHIKVNRQNFLS----AIRIVEKSVKENKIKPILSC----------IYAKVKGNKIYFTG 46 Query: 56 A-----IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105 I S+DV G + ++ + +++++D + E G + I D Sbjct: 47 TNLDTTIKTSIDVNEVIREGEVAFYYSIIDEYLKEIKDEFVVL---RVENGNILFIETED 103 Query: 106 SNFYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRY 155 S F ++P+T E E + FE+ S L N+ E+ F+ T + IR Sbjct: 104 STTEYDVFSAEDYPNTFENIVLNENNFKFEMPSQELVNIFEKVLFSADTPDNIAMNCIR- 162 Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215 + I H L V+T+ +RL + +I I+ S+ VP + I++I+ Sbjct: 163 -IESILKH-------LHFVSTNTYRLTFLKKNIDKDISDF-SVSVPADTISSIIKIIKGL 213 Query: 216 DSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVD 273 D+ V K+ ++ ++ + + +LI+ FPNY ++ S DK+L +N L + Sbjct: 214 DNEVIKIYKEDAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLHMNNDKLTNLLK 273 Query: 274 RVSIMSSVRIQAVKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 R+ I S ++ S + +K+ ++ N ++ + E ++V + + I N Sbjct: 274 RILIFSRSNSESKYSSTYEFKHNEENKNKMAISALN-EIARINEELDVNFEGEDLKISLN 332 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 KYLLE I NI ++ E+V SNS+V + KD D Y+LMP+ + Sbjct: 333 SKYLLEFIQNIPKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|257452078|ref|ZP_05617377.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R] gi|257466123|ref|ZP_05630434.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315917280|ref|ZP_07913520.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC 25563] gi|317058627|ref|ZP_07923112.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R] gi|313684303|gb|EFS21138.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R] gi|313691155|gb|EFS27990.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC 25563] Length = 373 Score = 65.1 bits (157), Expect = 2e-08, Method: Compositional matrix adjust. Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 20/226 (8%) Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 I D ++ V TD +RL + + + + + +P +AV +I ++ VK+ Sbjct: 162 IEGRDGEIHFVTTDTYRLTYLHKEFL--LPEDFQMSLPLEAVEACSKIFRGLEADVKLYF 219 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVR 282 + H IE + + LI+ FP YQ ++ N DK + ++ NL + RV I Sbjct: 220 DKKFAHFEIEDIHIMSSLIELNFPAYQAILSNGNYDKTMGISTENLLSILRRVIIFVRNN 279 Query: 283 IQAVKLSLS---SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 ++ K + SD L N D+ K E M V Y P+ + N KYL + + N+ D Sbjct: 280 EES-KYGATFHLSDGLLKIKGNSDIAKINEEMIVDYQGAPLKVSLNTKYLFDFVQNLEKD 338 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + E++ SS +SV + K K+ + Y+LMP+ + Sbjct: 339 TELSVEML----SSKTSVKVHEKGKE---------DYIYILMPLAL 371 >gi|257463320|ref|ZP_05627717.1| DNA polymerase III, beta chain [Fusobacterium sp. D12] gi|317060897|ref|ZP_07925382.1| DNA polymerase subunit III [Fusobacterium sp. D12] gi|313686573|gb|EFS23408.1| DNA polymerase subunit III [Fusobacterium sp. D12] Length = 365 Score = 64.7 bits (156), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 79/389 (20%), Positives = 158/389 (40%), Gaps = 31/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R + + +L I+ + P+ + ++ L S E++ I Sbjct: 1 MKLKMKREEFISILSDYTSILRENSIKPILSTLFMEVKGNDLVFMGSSVEMDYKKQILCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ L+ + V+ L++ + +L + I++G+ + + E +P Sbjct: 61 GMEDGSVVFKPALVLEYVKLLEE----EWITVEKLDGFLKIANGEFSIW----EEENYPK 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + EL+ + +E F+ A L+ I +E K+ V+TD +R Sbjct: 113 IVELASMSLLELSGNEFAKCLETVKFSAAQTPENLALHCIRIVFGKE--KVYFVSTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L E + AQ + +I +P AV I+++L K + + LS + E S R Sbjct: 171 LLYLEKKMTAQFER--AISLPLDAVNVIIKLLKDKTEQISLELSGDNLLFLWEGTYFSCR 228 Query: 241 LIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296 L +PN+Q ++ + DK++ +L+ A+ RV ++ I A L Sbjct: 229 LTAVPYPNFQGILSQNAFDKKMEFCLDDLKAAMKRVITVAKTSIDAKYGGTFDFKGKHLV 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + K + + + N KYL E +D++S + ++ + NSS Sbjct: 289 VKAVTTGRAKTQQKIAMMKEGEDFVASLNCKYLSEFLDSVSRNVII--------EGKNSS 340 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ ++ Y+LMP+ + Sbjct: 341 SMFRVTEEGNE-------ELIYILMPLAL 362 >gi|257467227|ref|ZP_05631538.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918356|ref|ZP_07914596.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313692231|gb|EFS29066.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 365 Score = 64.3 bits (155), Expect = 3e-08, Method: Compositional matrix adjust. Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 49/398 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + +L I++ + P+ + ++ + L S E++ I Sbjct: 1 MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++ L+ + ++ L++ + +L + I++G EF Sbjct: 61 GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG------------EFAI 104 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY---------YLNGIFFHINEEDLKL 171 +EE Y ELAS L ++ FA E +++ LN I +E K+ Sbjct: 105 LEEENYPKIVELASMSLLQ-IQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KI 161 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+TD +RL E I AQ + +I +P +AV I+++L K + + LS + L Sbjct: 162 NFVSTDSYRLLYLEKKIGAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLL 219 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---K 287 E S RL +PN+Q ++ + DK++ +L+ A+ RV ++ I A Sbjct: 220 WEGTYFSCRLTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGT 279 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + K + + + N KYL E +D IS + ++ Sbjct: 280 FDFKGKQLVVKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVII----- 334 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS R ++ ++ Y+LMP+ + Sbjct: 335 ---YGKNSSSMFRVMEEGNE-------ELIYILMPLAL 362 >gi|257792998|ref|YP_003186397.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479690|gb|ACV60008.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 391 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 76/359 (21%), Positives = 152/359 (42%), Gaps = 25/359 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEI----- 53 MK T D+ ++L R++ V HVL++A + ++ AS ++ + Sbjct: 1 MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLC 60 Query: 54 TGAIPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 A +SV++ GS + A LY+++++ + + + I+ G + F L Sbjct: 61 VEATDSSVEIARSGSCLLPAKELYEVIKRANGPITVETTTDRTV-----ITFGKTKFELV 115 Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 F P ++ V + + + L L+ RT +A + R L G+ + D Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSQTRPILTGV--QLTLADGH 173 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----SES 226 L AVATD RLA V + +++P + + L + D +V+ S Sbjct: 174 LSAVATDALRLAQYTVSCEDVNGEDRQLVIPAVLLDTLATALPASDDDEEVTFTLGTSSC 233 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + ++ M++R ++G +P+ +IP + V L A +RV+I+S Q Sbjct: 234 TVSWGDDAFHMALRGLEGTYPDTARLIPERTAHRVVVERQALLTACERVAILSEADHQRA 293 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYL---LEIIDNISSDEV 341 + + L ++ + G A E++ + + +++ N Y L+ +D I+ E+ Sbjct: 294 EFRFTMSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDGIAQVEI 352 >gi|257451968|ref|ZP_05617267.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R] gi|317058517|ref|ZP_07923002.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R] gi|313684193|gb|EFS21028.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R] Length = 365 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 49/398 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + +L I++ + P+ + ++ + L S E++ I Sbjct: 1 MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++ L+ + ++ L++ + +L + I++G EF Sbjct: 61 GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG------------EFAI 104 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY---------YLNGIFFHINEEDLKL 171 +EE Y ELAS L ++ FA E +++ LN I +E K+ Sbjct: 105 LEEENYPKIVELASMSLLQ-IQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KI 161 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+TD +RL E I AQ + +I +P +AV I+++L K + + LS + L Sbjct: 162 NFVSTDSYRLLYLEKKIRAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLL 219 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---K 287 E S RL +PN+Q ++ + DK++ +L+ A+ RV ++ I A Sbjct: 220 WEGTYFSCRLTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGT 279 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + K + + + N KYL E +D IS + ++ Sbjct: 280 FDFKGKQLIVKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVII----- 334 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS R ++ ++ Y+LMP+ + Sbjct: 335 ---YGKNSSSMFRVMEEGNE-------ELIYILMPLAL 362 >gi|315928459|gb|EFV07771.1| DNA polymerase III beta subunit, central domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 247 Score = 63.9 bits (154), Expect = 4e-08, Method: Compositional matrix adjust. Identities = 53/233 (22%), Positives = 114/233 (48%), Gaps = 16/233 (6%) Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F +FP+ E F++ SS L +++ ++ T +Y LNG F I + K+ Sbjct: 2 FNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KIN 59 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD RLA+ ++ + S +P+KA+ E+ ++ K +++ ++ + Sbjct: 60 FVGTDTKRLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKN 114 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 E+ +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ + +KL + Sbjct: 115 ENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNK 170 Query: 293 DKLC---MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 DK+ +++DN + +E E ++ KYLL+ + +I ++ Sbjct: 171 DKIIFEGISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 221 >gi|331703022|ref|YP_004399709.1| DNA polymerase IIIsubunit beta [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384459|gb|ACU79029.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385292|gb|ACU79861.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455793|gb|ADH22028.1| DNA polymerase III, beta subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801577|emb|CBW53730.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 375 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 75/358 (20%), Positives = 155/358 (43%), Gaps = 32/358 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIP---------VSCHVLLQANDGLLEIKA----S 47 M ++ R +L+ L A ++I+ KN P +S V + A G+L K+ Sbjct: 1 MNFSINRMVLLDNLSKAAKVIDPKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60 Query: 48 GPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDS 106 ++E+ G + + + +++R+L D + S ++NEL I +S Sbjct: 61 NSDLEVKQE--------GKVLLKPKFVLEMLRRLDDEFVVFSMVEDNELI----IKTDNS 108 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 +F + ++P E F L +K + + +M + L G+ +N Sbjct: 109 DFSIGVLNSEDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNN 168 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 K TD R++ ++I + + I +P K E+ ++L + ++ +K+ + E Sbjct: 169 N--KAIFSTTDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEG 225 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA- 285 I I+++ LIDG FPN Q P + + V ++ + + R +++ + A Sbjct: 226 YITFIIDNVIFQSNLIDGRFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAI 285 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341 V + ++ DK+ ++GK E + + E + I FN ++L++ I + D + Sbjct: 286 VNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLDEDRI 343 >gi|83319869|ref|YP_424002.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|1169394|sp|P24117|DPO3B_MYCCT RecName: Full=DNA polymerase III subunit beta gi|83283755|gb|ABC01687.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 375 Score = 63.5 bits (153), Expect = 5e-08, Method: Compositional matrix adjust. Identities = 76/350 (21%), Positives = 154/350 (44%), Gaps = 16/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASG----PEIEITG 55 M ++ R +L+ L A ++I+ KN P + L ND + I SG I Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFP 114 V G + + + +++R+L D + S ++NEL + N +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIKTN----NSDFSIGVLN 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P E F L +K + + +M + L G+ +N + Sbjct: 117 SEDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNN--QAIFS 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD R++ ++I + + I +P K E+ ++L + ++ +K+ + E I I++ Sbjct: 175 TTDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDN 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293 + LIDG+FPN Q P + + V ++ + + R +++ + A V + ++ D Sbjct: 234 VIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNED 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341 K+ ++GK E + + E + I FN ++L++ I +S D + Sbjct: 294 KIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLSEDRI 343 >gi|213423088|ref|ZP_03356106.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 131 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 4/133 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFEL 132 + + + F L Sbjct: 118 NLDDWQSEVEFTL 130 >gi|296327521|ref|ZP_06870067.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155347|gb|EFG96118.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 364 Score = 63.5 bits (153), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 85/393 (21%), Positives = 174/393 (44%), Gaps = 39/393 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117 ++ G + + LL + + KL +G I+F K++ + S D N Y PE Sbjct: 61 IESEGQVLIKPALLLEYI-KLLEGENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P E F ++ +K L T+ + +T+ + + IF +D L V+T Sbjct: 116 IIPIVIASENTVKFTMSLEKVKFL---TNSSTSTDTLFNSIKMIF-----KDNVLELVST 167 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D RL + ++ I K ++VP ++ + +I D ++ S+ ++ + + Sbjct: 168 DSFRLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAY 225 Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLSS 292 + +L+ FP+++ +I +N DK N L A+ + V+ SS + Sbjct: 226 FTCKLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKG 285 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++L ++ + + K + +N+ + + N KY+ + IDN VD ++ +D+ Sbjct: 286 NQLLISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDN------VDKNII--IDA 336 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +NSS +R ++ ++ N Y++MP+ I Sbjct: 337 TNSSSMLRFMEEGNE-------NYIYLIMPVNI 362 >gi|19703952|ref|NP_603514.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714128|gb|AAL94813.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 364 Score = 63.2 bits (152), Expect = 6e-08, Method: Compositional matrix adjust. Identities = 83/393 (21%), Positives = 173/393 (44%), Gaps = 39/393 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117 ++ G + + LL + + KL +G I+F K++ + S D N Y PE Sbjct: 61 IESEGQVLIKPALLLEYI-KLLEGENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P E F ++ +K L T+ + +T+ + + IF +D L V+T Sbjct: 116 IIPIVIASENTVKFTMSLEKVKFL---TNSSASTDTLFNSIKMIF-----KDNVLELVST 167 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D RL + ++ I K ++VP ++ + +I D ++ S+ ++ + + Sbjct: 168 DSFRLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAY 225 Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLSS 292 + +L+ FP+++ +I +N DK N L A+ + V+ SS + Sbjct: 226 FTCKLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKG 285 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++L ++ + + K + +N+ + + N KY+ + IDN+ + ++ D+ Sbjct: 286 NQLLISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDNVDKNIII--------DA 336 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +NSS +R ++ ++ N Y++MP+ I Sbjct: 337 TNSSSMLRFMEEGNE-------NYIYLIMPVNI 362 >gi|256026784|ref|ZP_05440618.1| DNA polymerase III, beta chain [Fusobacterium sp. D11] gi|289764779|ref|ZP_06524157.1| DNA polymerase subunit III [Fusobacterium sp. D11] gi|289716334|gb|EFD80346.1| DNA polymerase subunit III [Fusobacterium sp. D11] Length = 381 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 98/415 (23%), Positives = 177/415 (42%), Gaps = 70/415 (16%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R + L + + ++ P+ + + + +I +G ++ T I S Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107 +DV G I S ++ + +++++D I F + + TE ++ + Sbjct: 57 IDVDEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENRNILFIETEDSTTEYDVHSAE-- 114 Query: 108 FYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRYYL 157 ++P+T E E + FE+ S L N+ E+ F+ T + IR + Sbjct: 115 ---------DYPNTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNIAMNCIR--I 163 Query: 158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS 217 I H L V+T+ +RL + +I I S+ VP + I++I+ D+ Sbjct: 164 ESILKH-------LHFVSTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDN 215 Query: 218 SV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRV 275 V KV E+ ++ + + +LI+ FPNY ++ S DK+L +N L + R+ Sbjct: 216 EVIKVYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRI 275 Query: 276 SIMSSVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKY 328 I S ++ S +K MT+ ++ + E ++V + + I N KY Sbjct: 276 LIFSRSNSESKYSSTYEFKHNEENKGIMTISALNEIARINEELDVNFEGEDLKISLNSKY 335 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 LLE I NI ++ E+V SNS+V + KD D Y+LMP+ Sbjct: 336 LLEFIQNIPKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPL 377 >gi|218289463|ref|ZP_03493691.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218240331|gb|EED07513.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 391 Score = 63.2 bits (152), Expect = 7e-08, Method: Compositional matrix adjust. Identities = 78/359 (21%), Positives = 150/359 (41%), Gaps = 25/359 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEI----- 53 MK T D+ ++L R++ V HVL++A + ++ AS ++ + Sbjct: 1 MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLF 60 Query: 54 TGAIPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 A +SV++ GS + A LY+++++ + + + I G + F L Sbjct: 61 VEATDSSVEIAQSGSCLLPAKELYEVIKRANGPITMETTTDRTV-----IKFGKTKFELV 115 Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 F P ++ V + + + L L+ RT +A R L G+ + D Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSLTRPILTGV--QLTLADGH 173 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----SES 226 L AVATD RLA V + +++P + + L + D +VS S Sbjct: 174 LSAVATDALRLAQHTVSCEDVNGEDRQLVIPAVLLDTLAAALPATDDDEEVSFTLGTSSC 233 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + ++ M++R ++G +PN +IP + V L A +RV+I+S Q Sbjct: 234 TVSWGDDAFHMALRGLEGTYPNTARLIPERMTHRVVVERQALLTACERVAILSEADHQRA 293 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYL---LEIIDNISSDEV 341 + + L ++ + G A E++ + + +++ N Y L+ +D I+ E+ Sbjct: 294 EFRFTPSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDGIAQVEI 352 >gi|238810154|dbj|BAH69944.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 369 Score = 63.2 bits (152), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 174/376 (46%), Gaps = 39/376 (10%) Query: 13 LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH 72 L G C +I+ N V A++G++ I S ++E + V+ G+ + A+ Sbjct: 28 LYGFRCILIKVDNE-----KVTFSASNGVISIVKS-LDVE---DVDIKVEETGTFLIQAN 78 Query: 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132 + I++KL + +S E T + IS G+SN+ L + P + FP +E + E+ Sbjct: 79 IFKAIIKKLSETITLS----QEYSTTLEISQGNSNYSLTTNPINSFPQIEENINLKKIEI 134 Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192 ++ K + T FA++ + Y I F L L ATD RLA +D+ + Sbjct: 135 DTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNNKLNLT--ATDAARLAYYTMDLKSSQ 191 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQ 250 V K V +++ D+S KV+L +RI + IE + ++ R++D +P+ + Sbjct: 192 VDNEEFSVNNKDVKDLI----PADASKKVTLFFNRIKIGIEYKNTVITSRIVDLPYPDVE 247 Query: 251 NVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI- 308 ++ + + ++ + + +++V + +S + ++ +++ +++ + ++G +I Sbjct: 248 SLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNEITVLNRLNEIGTSIA 307 Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368 ++ N + + NY +L + + V + +V+ D S + + S + Sbjct: 308 KTENFKFEGKAFEFDINYHFLKDAL------SVFEGDVLILFDKSVQKILVV-----SDS 356 Query: 369 NKDNKVNAFYVLMPMR 384 NK++K ++ PMR Sbjct: 357 NKESK----QLVTPMR 368 >gi|319776740|ref|YP_004136391.1| DNA polymerase iii beta subunit [Mycoplasma fermentans M64] gi|318037815|gb|ADV34014.1| DNA polymerase III beta subunit [Mycoplasma fermentans M64] Length = 368 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 174/376 (46%), Gaps = 39/376 (10%) Query: 13 LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH 72 L G C +I+ N V A++G++ I S ++E + V+ G+ + A+ Sbjct: 27 LYGFRCILIKVDNE-----KVTFSASNGVISIVKS-LDVE---DVDIKVEETGTFLIQAN 77 Query: 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132 + I++KL + +S E T + IS G+SN+ L + P + FP +E + E+ Sbjct: 78 IFKAIIKKLSETITLS----QEYSTTLEISQGNSNYSLTTNPINSFPQIEENINLKKIEI 133 Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192 ++ K + T FA++ + Y I F L L ATD RLA +D+ + Sbjct: 134 DTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNNKLNLT--ATDAARLAYYTMDLKSSQ 190 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQ 250 V K V +++ D+S KV+L +RI + IE + ++ R++D +P+ + Sbjct: 191 VDNEEFSVNNKDVKDLI----PADASKKVTLFFNRIKIGIEYKNTVITSRIVDLPYPDVE 246 Query: 251 NVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI- 308 ++ + + ++ + + +++V + +S + ++ +++ +++ + ++G +I Sbjct: 247 SLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNEITVLNRLNEIGTSIA 306 Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368 ++ N + + NY +L + + V + +V+ D S + + S + Sbjct: 307 KTENFKFEGKAFEFDINYHFLKDAL------SVFEGDVLILFDKSVQKILVV-----SDS 355 Query: 369 NKDNKVNAFYVLMPMR 384 NK++K ++ PMR Sbjct: 356 NKESK----QLVTPMR 367 >gi|253582114|ref|ZP_04859338.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725] gi|251836463|gb|EES65000.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725] Length = 376 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 84/407 (20%), Positives = 173/407 (42%), Gaps = 59/407 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + ++R D L+ L + I P+ ++ + L + E IT + Sbjct: 1 MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETREENLFFCGTNLETTITTEMKCE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL--------- 110 V G I L+ + +R+++D V +S D+N ++ Sbjct: 61 EIVEEGKIVFQHQLVDEYLREIKDEI-------------VTLSVRDNNLFIESSDSSSEF 107 Query: 111 -----QSFP----ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161 + FP E++F +E+ F++ S+ L ++ E+ FA ++ +N + Sbjct: 108 SLMEAEDFPRILVEADFFQRQED-----FKINSTELADIFEKVKFAASSSSENLPINCVR 162 Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVK 220 +LK + TD +RL E ++ ++ + + +P + + ++L S +++ +K Sbjct: 163 LESEGNNLKF--ITTDTYRLVFLEKEL-EKVNEKLGVSIPLNTIEALAKLLRSIEETEIK 219 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS 279 +++ +E + R+ID FPNY+ ++ + +K L +N + + R+ I Sbjct: 220 FYFYNKQVYFKLEDTLIISRVIDLAFPNYRGILGNDTYNKTLIINSEKFLKVLRRIIIFV 279 Query: 280 SVRIQA---VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 +++ L +L + N D+ K E + V Y + I N K+L + I N+ Sbjct: 280 RNNVESKYGATFELEGKELKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSDFIQNL 338 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + ++ SSNSSV I+ K+N N Y++MP+ Sbjct: 339 NK----ESNIMLNFISSNSSVKIK---------KENDDNYLYIVMPL 372 >gi|308189589|ref|YP_003922520.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|307624331|gb|ADN68636.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] Length = 368 Score = 62.8 bits (151), Expect = 8e-08, Method: Compositional matrix adjust. Identities = 81/376 (21%), Positives = 174/376 (46%), Gaps = 39/376 (10%) Query: 13 LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH 72 L G C +I+ N V A++G++ I S ++E + V+ G+ + A+ Sbjct: 27 LYGFRCILIKVDNE-----KVTFSASNGVISIVKS-LDVE---DVDIKVEETGTFLIQAN 77 Query: 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132 + I++KL + +S E T + IS G+SN+ L + P + FP +E + E+ Sbjct: 78 IFKAIIKKLSETITLS----QEYSTTLEISQGNSNYSLTTNPINSFPQIEENINLKRIEI 133 Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192 ++ K + T FA++ + Y I F L L ATD RLA +D+ + Sbjct: 134 DTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNNKLNLT--ATDAARLAYYTMDLKSSQ 190 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQ 250 V K V +++ D+S KV+L +RI + IE + ++ R++D +P+ + Sbjct: 191 VDNEEFSVNNKDVKDLI----PTDASKKVTLFFNRIKIGIEYKNTVITSRIVDLPYPDVE 246 Query: 251 NVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI- 308 ++ + + ++ + + +++V + +S + ++ +++ +++ + ++G +I Sbjct: 247 SLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNEMTVLNRLNEIGTSIA 306 Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368 ++ N + + NY +L + + V + +V+ D S + + S + Sbjct: 307 KTENFKFEGKAFEFDINYHFLKDAL------SVFEGDVLILFDKSVQKILVV-----SDS 355 Query: 369 NKDNKVNAFYVLMPMR 384 NK++K ++ PMR Sbjct: 356 NKESK----QLVTPMR 367 >gi|6007546|gb|AAF00953.1|AF183408_1 DNA polymerase III beta subunit [Microcystis aeruginosa PCC 7806] Length = 139 Score = 62.8 bits (151), Expect = 9e-08, Method: Compositional matrix adjust. Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 2/104 (1%) Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCM 297 R ++G +P Y +IP S D+ L ++ L + ++ V+++S + VK SL S D+L + Sbjct: 4 RKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSL 63 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 V++PD+G A ESM DI FN KYL++ + + ++++ Sbjct: 64 AVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 107 >gi|228918927|ref|ZP_04082312.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840729|gb|EEM85986.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 370 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 82/391 (20%), Positives = 164/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58 MK T+ R+ +E L A ++ KN +P V L N G++ + + G E + + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVFLDCNQQGMILMGSDGTETVTLVTRFN 60 Query: 59 ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + C G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESMKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E + + RT A+A + R L G+ ++ +L A Sbjct: 118 EEYPEIKIESGKDWLTMTQEQFAEIASRTLHAIAIADTRKVLTGL--NLKSMKGELSCTA 175 Query: 176 TDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RLA + AK +I+P K++ L++ + + +S++++ + ES Sbjct: 176 TDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFNREPKLEMKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ +IP +D + V + L+ ++++S S++ + S Sbjct: 236 IIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFSTL---VMFTSEGQKS 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + N +G A + E C N +YLL+ + I S + + ++ S+ Sbjct: 293 LRIEPKNSQVGTASVEIPCDQEETFTFAC-NVEYLLQALQTIQS-----EAITIKIISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G + + +N +++P+R+ Sbjct: 347 RPIVIVGANDKTNSN-------LQLILPVRV 370 >gi|228912517|ref|ZP_04076182.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] gi|228847087|gb|EEM92076.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] Length = 370 Score = 62.0 bits (149), Expect = 1e-07, Method: Compositional matrix adjust. Identities = 86/394 (21%), Positives = 173/394 (43%), Gaps = 33/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M + R+ +E L A ++ K+ +P VLL+ N G++ + + G E +T Sbjct: 1 MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTET-VTLVTRF 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSF 113 +V+ G T +L+ L+ I FK +G E + + F + Sbjct: 60 NVN-SGDCTEPGKVLFAAAPVLKT---IKKFKSEFIGLEHTNNELKIVENTKKQFSFCTM 115 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P K E + + RT A+A + R L G+ ++ + +L Sbjct: 116 DHEEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGL--NLKSMEGELSC 173 Query: 174 VATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLN 231 ATD +RLA + A K +I+P K++ L++ + ++S +++ L S++++ + Sbjct: 174 TATDSYRLARLRFERTHIPATKDGEVILPSKSLKTALKLFN-RESKLEMKLISDTQLLIR 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ES+ RL+ G +P+ +IP +D + V + L+ ++++S SS+ + S Sbjct: 233 GESIIYQSRLLAGVYPDTSRMIPVYSDIYVTVERSELQNTLEQLSAFSSL---VMFTSEG 289 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + N +G A + E C N +YLL+ + I S + + ++ Sbjct: 290 KKSLRIEPKNSQVGTASVEIPCDQEETFTFAC-NVEYLLQALQTIPS-----EAITIKII 343 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + I G D + +N+ +++P+R+ Sbjct: 344 NNQRPIVIVGADDKTNSNQQ-------LILPVRV 370 >gi|239904641|ref|YP_002951379.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1] gi|239794504|dbj|BAH73493.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1] Length = 397 Score = 62.0 bits (149), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 80/413 (19%), Positives = 170/413 (41%), Gaps = 56/413 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TV R+DI++ L + II K V L+A L I ++ +E TG A Sbjct: 1 MQLTVFRNDIIDGLQKSSSIIPAKTGAAFLRTVWLEAAGSSLSILSTDSSLEFTGHYAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112 V G V +++VRKL G +IS +E + I G + + Q Sbjct: 61 VAKEGLCGVQGKSFFELVRKLPPG-EIS-LTLDEASGNLLIKQGSRRYKLPVSDRNWFQP 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F + FP+ + F L+ ++ER + ++ E+ + ++ + ++ Sbjct: 119 F--AAFPNEGAVTWSGDF------LQEIIERVAYCISDEDTMEAMACMYLRPVADSARIE 170 Query: 173 AVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +GH+ ++ D + + I++ +K V E+ R L++++ V++++ + R+ Sbjct: 171 VCGLNGHQFSLVGFLNDDIHAMLPPDGILIQKKYVAELKRWLTAEE--VELAMGQKRLFF 228 Query: 231 --------------NIESLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVD 273 ++E+ S+ + ++P+Y + L ++ A++ Sbjct: 229 RTTKRDEAAPEGQGSVETFSLPLSFY--QYPDYNAFVSKLATDGVSTLAIDRLECIDALE 286 Query: 274 RVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 RV+I ++ + +L + + G+A E++ + + F K L +I Sbjct: 287 RVAIFNTDNNRCASFLFDGPGELSLKSQGQEAGEATETLECVFTGDLDKVAFPTKDLTDI 346 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + S +V L + IRG+D ++ ++MPM+I Sbjct: 347 LGHFES-----AKVSLTLTGAEGPCGIRGED---------DTDSLVIIMPMKI 385 >gi|297201230|ref|ZP_06918627.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] gi|297147836|gb|EDY56941.2| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] Length = 388 Score = 61.6 bits (148), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 3/150 (2%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 +A+ L ++ FA +T+ L G+ F I E L + VATD +RLAVA + Sbjct: 158 LTVAAPELGAALDTVRFAASTDPELPMLGGVLFDIEGESLHV--VATDRYRLAVARAGVT 215 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 +IVP + + +R L + V+ L R+ L ++ + +D +FP+Y Sbjct: 216 GHEGSRVQVIVP-TPLADAMRALLHGEGPVRFLLDGDRVALEAGDGQVAGQCLDHDFPDY 274 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + ++P + D+ V + R+ ++ + S Sbjct: 275 RRLLPQAGDRRALVEVADFRRTLETGPVRS 304 >gi|169834653|ref|YP_001693398.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str. Okra] gi|169123201|gb|ACA47036.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str. Okra] Length = 381 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 24/291 (8%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+I +S +L I++K+ + +IS F + + + I G +N + E + Sbjct: 65 GNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAREHTISDILKS 123 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + +YS L + V K+L++ T +A+A +E R L G + + + +K+ A+ DG RL Sbjct: 124 DIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKITAL--DGFRLVSN 181 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE-------SL 235 I Q M I LR LSS DS+ +V L+++ +E ++ Sbjct: 182 SAKIENQHEDMILIHANN------LRNLSSLIDDSTEEVILNKNNNKTIVEVKNKNYVAI 235 Query: 236 SMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + S + EF Y+ +I S ++ V+ L VDR+S++SS + + + + Sbjct: 236 AAS-NIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294 Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341 K + +D N + +N+ N E I FN KY+L+ + NI++ E+ Sbjct: 295 KDSLEIDGNSSVASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEI 345 >gi|289811520|ref|ZP_06542149.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 61.2 bits (147), Expect = 2e-07, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 4/121 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 S 120 + Sbjct: 118 N 118 >gi|237738323|ref|ZP_04568804.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817] gi|229420203|gb|EEO35250.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817] Length = 363 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 87/391 (22%), Positives = 166/391 (42%), Gaps = 40/391 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R ++ +L I++ P+ + + A D + + EIE I A Sbjct: 1 MKFSIIREQLISVLSEYTNILKENPIKPIVSGLKIIAKDNQVIFIGTNLEIEHIRKIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL----GTEVNISHGDSNFYLQSFPES 116 V+ G + + LL + ++ L++ +I F EN E ++ G S Sbjct: 61 VEREGEVVLKPFLLLEYIKLLEED-KIEFSSENGFVAVHQAEFSVLEGGS---------- 109 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E E + + L L++R FA + +N + +E+L L + T Sbjct: 110 -YPVIPELESQSLLTIEGNRLVQLLDRAKFAASQSADNIQINCVRAVFKKEELNLAS--T 166 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RL + K SI P + V + ++L + + + S + + E+ Sbjct: 167 DSYRLLFLREKVECNENKELSI--PMETVNILCKLLKDYNKEIHLGYSGETLVITWENSY 224 Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 S + I ++P+++ ++ S +K + N LR A+ RV ++ + A ++ + Sbjct: 225 FSSKTIGLQYPDFKTILRISAFEKRMEFNRDELRSAIKRVITVAKTSLDAKFGAIFNFTG 284 Query: 296 CMTVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 M V N G+A + +N+ N K+L E IDNIS++ ++ ++ Sbjct: 285 KMMVINAFSGRAKINQKVNMLKEGEDFKASLNCKFLAEYIDNISNNVIIS-------GNN 337 Query: 354 NSSVF-IRGKDKDSKNNKDNKVNAFYVLMPM 383 SS+F IR + N+D Y+LMP+ Sbjct: 338 ASSMFEIR-----EEGNED----YIYILMPL 359 >gi|168184796|ref|ZP_02619460.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] gi|182672169|gb|EDT84130.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] Length = 381 Score = 61.2 bits (147), Expect = 2e-07, Method: Compositional matrix adjust. Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 24/291 (8%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+I +S +L I++K+ + +IS F + + + I G +N + E + Sbjct: 65 GNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAREHTISDILKS 123 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + +YS L + V K+L++ T +A+A +E R L G + + + +K+ A+ DG RL Sbjct: 124 DIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKITAL--DGFRLVSN 181 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE-------SL 235 I Q M I LR LSS DS+ +V L+++ +E ++ Sbjct: 182 SAKIENQHEDMILIHANN------LRNLSSLIDDSTEEVILNKNNNKAIVEVKNKNYVAI 235 Query: 236 SMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + S + EF Y+ +I S ++ V+ L VDR+S++SS + + + + Sbjct: 236 AAS-NIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294 Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341 K + +D N + +N+ N E I FN KY+L+ + NI++ E+ Sbjct: 295 KDSLEIDGNSSVASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEI 345 >gi|254304130|ref|ZP_04971488.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324322|gb|EDK89572.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 381 Score = 61.2 bits (147), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 105/418 (25%), Positives = 181/418 (43%), Gaps = 76/418 (18%) Query: 1 MKITVERSDILELLGHACRIIER---KNTIP--VSCHVLLQANDGLLEIKASGPEIEITG 55 M I V R + L A RI+E+ +N I +SC + K G +I TG Sbjct: 1 MHIRVNRQNFL----SAIRIVEKSIKENKIKPILSC----------IYAKVKGNKIYFTG 46 Query: 56 A-----IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105 I S+DV G + ++ + +++++D I EN G + I D Sbjct: 47 TNLDTTIKTSIDVNEVIREGEVAFYCSIIDEYLKEIKDEF-IVLRVEN--GNILFIETED 103 Query: 106 SNFYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRY 155 S F ++P+T E E + FE+ S L + E F+ T + IR Sbjct: 104 SITEYDVFSAEDYPNTFENIILNENNFKFEMPSQELVTIFENVLFSADTPDNIAMNCIR- 162 Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215 + I H L V+T+ +RL + +I I S+ VP + I++I+ Sbjct: 163 -IESILKH-------LHFVSTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGL 213 Query: 216 DSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVD 273 D+ V K+ ++ ++ + ++ +LI+ FPNY ++ S DK+L +N L + Sbjct: 214 DNEVIKIYKEDAHLYFQYKDTTIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLK 273 Query: 274 RVSIMSSVRIQAVKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 R+ I S ++ S +++K+ ++ N ++ + E ++V + + I N Sbjct: 274 RILIFSRSNSESKYSSTYEFKHGEENNNKMSISALN-EIARINEELDVNFEGEDLKISLN 332 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 KYLLE I NI ++ E+V SNS+V + KD D Y+LMP+ Sbjct: 333 SKYLLEFIQNIPKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPL 377 >gi|260892589|ref|YP_003238686.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] gi|260864730|gb|ACX51836.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] Length = 386 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 80/377 (21%), Positives = 157/377 (41%), Gaps = 22/377 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-----NDGLLEIKASGPEIEITG 55 +++ V++ ++ ++L R + K +P VL++ + + A+ + +I Sbjct: 8 LRVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVA 67 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFP 114 ++ A ++ G + + A +D+VR+L + + + G E V +S+ L Sbjct: 68 SLQAHLEGEGELWLPAKETFDLVRRLPE----CTLELGQAGPEQVLVSYPGGEARLTGMN 123 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP+ E+E Y+ L L N + R +A A + + G+ + L Sbjct: 124 PEEFPAVNEQEDGYT-ALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSG-GLTFA 181 Query: 175 ATDGHRLAV---AEVDIVAQIAKMPSIIVPRKAVGEIL---RILSSKDSSVKVSLSESRI 228 ATDGHRLAV E D S +VP + E+L ++L + V + + Sbjct: 182 ATDGHRLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLLGKEPDRVLLGRHTASF 241 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 E+ + RLID +FP+++ +P S L L ++R ++ V Sbjct: 242 VWPGEA-EFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVV 300 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L + + + G+ E ++ + + FN YLLE + + D + V Sbjct: 301 LLVKEGEEVRLEARSEAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVL--DSAAEVRVG 358 Query: 348 FRLDSSNSSVFIRGKDK 364 +S ++V + G ++ Sbjct: 359 LYGPASPATVTVPGDER 375 >gi|326943605|gb|AEA19498.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 370 Score = 60.8 bits (146), Expect = 3e-07, Method: Compositional matrix adjust. Identities = 85/394 (21%), Positives = 173/394 (43%), Gaps = 33/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M + R+ +E L A ++ K+ +P VLL+ N G++ + + G E +T Sbjct: 1 MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTET-VTLVTRF 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSF 113 +V+ G T +L+ L+ I FK +G E + + F + Sbjct: 60 NVN-SGDCTEPGKVLFAAAPVLKT---IKKFKSEFIGLEHTNNELKIVENTKKQFSFCTM 115 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P K E + + RT A+A + R L G+ ++ + +L Sbjct: 116 DHEEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGL--NLKSMEGELSC 173 Query: 174 VATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLN 231 ATD +RLA + AK +I+P K++ L++ + ++S +++ L S++++ + Sbjct: 174 TATDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFN-RESKLEMKLISDTQLLIR 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ES+ RL+ G +P+ +IP +D + V + L+ ++++S S++ + S Sbjct: 233 GESIIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFSTL---VMFTSEG 289 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + L + N +G A + E C N +YLL+ + I S + + ++ Sbjct: 290 TKSLRIEPKNSQVGTASVEIPCDQEETFTFAC-NVEYLLQALQTIPS-----EAITIKII 343 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + I G D + +N +++P+R+ Sbjct: 344 NNQRPIVIVGADDKTNSN-------LQLILPVRV 370 >gi|237742193|ref|ZP_04572674.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|256845466|ref|ZP_05550924.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] gi|229429841|gb|EEO40053.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|256719025|gb|EEU32580.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 364 Score = 60.8 bits (146), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 83/398 (20%), Positives = 171/398 (42%), Gaps = 49/398 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L E NI+ + YL +EF Sbjct: 61 IESEGQVLIKPALLLEYIK---------------LVEEDNINFEKKDGYL-IVNNAEFSI 104 Query: 121 TKEEEYVYSFELASSVLKNLVERT-HFAMATEEIRYYLNG------IFFHINE--EDLKL 171 + Y E+ V+ E T F M+ E++++ N +F I +D L Sbjct: 105 LDDNTYPELTEIIPIVIA--TENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNIL 162 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+TD RL + ++ I K I+VP ++ I +IL D ++ S+ ++ + Sbjct: 163 ELVSTDSFRLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVT 220 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVK 287 + + +L+ FP+++ +I +N DK N L A+ + V+ SS Sbjct: 221 WKDAYFTCKLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVAT 280 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + ++L ++ + + K + +N+ + + N KY+ E IDN+ + ++ Sbjct: 281 FNFKGNQLVISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNLII----- 334 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++NSS +R ++ ++ N Y++MP+ I Sbjct: 335 ---EATNSSSMLRFMEEGNE-------NYIYLIMPVNI 362 >gi|313664892|ref|YP_004046763.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50] gi|312949557|gb|ADR24153.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50] Length = 375 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 75/350 (21%), Positives = 152/350 (43%), Gaps = 16/350 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASG----PEIEITG 55 M ++ R +L+ L A ++I+ KN P + L ND + I SG I Sbjct: 1 MNFSINRMILLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQINVIATSGILSFKSILNNQ 60 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFP 114 V G + + + +++R+L D + S +ENEL I +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDQFVVFSMVEENELI----IKTDNSDFSVGVLN 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P E F L +K + + +M + L G+ + + Sbjct: 117 SEDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTNN--QAIFS 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD R++ ++I + + I +P K E+ ++L + ++ +K+ + E I I++ Sbjct: 175 TTDSFRISQKILEIQSNNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDN 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293 + LIDG+FPN Q P + + V ++ + + R +++ + A V + ++ D Sbjct: 234 VIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNED 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341 K+ ++GK E + + E + I FN ++L++ I ++ D + Sbjct: 294 KIEFKSFISEVGKYEEDFDNFVIEGNKSLSISFNTRFLIDAIKTLNEDRI 343 >gi|257463051|ref|ZP_05627453.1| DNA polymerase III, beta chain [Fusobacterium sp. D12] gi|317060655|ref|ZP_07925140.1| DNA polymerase subunit III [Fusobacterium sp. D12] gi|313686331|gb|EFS23166.1| DNA polymerase subunit III [Fusobacterium sp. D12] Length = 373 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 41/305 (13%) Query: 96 GTEVNISHGDSNFYLQSFPESEFPST-----KEEEYVYSFELASSVLKNLVERTHFAMAT 150 G + + GD+ +FP ++P K+EE V + S L + ++ F+ + Sbjct: 93 GEALMVEGGDAVSEFSTFPYEDYPKAFENFEKQEEEVL-LRMNSIELATIFDKLKFSAGS 151 Query: 151 EE------IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 + +R + D ++ V TD +RL Q S+ P + Sbjct: 152 TDNPAIHCVR---------VEGRDGEIHFVTTDTYRLTYLHKSFSLQEDFQMSL--PLET 200 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN-DKELRV 263 V +I ++ VKV + H IE + + LI+ FP YQ ++ N DK + + Sbjct: 201 VEACSKIFRGLEAEVKVYFDKKFAHFLIEDIHIVSSLIELTFPAYQTILSNGNYDKIMGI 260 Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLS---SDKLCMTVDNPDMGKAIESMNVYYNECPM 320 + +L + RV I ++ K + +D + N D+ K E M V Y P+ Sbjct: 261 STESLISILRRVIIFVRNNEES-KYGATFHLADGVLKIKGNSDIAKINEEMAVDYQGAPL 319 Query: 321 DICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVL 380 + N KYL + + N+ D E+ + SS +SV + K K+ + Y+L Sbjct: 320 KVSLNTKYLFDFVQNLEK----DTELSLEMLSSKTSVKVHEKGKE---------DYIYIL 366 Query: 381 MPMRI 385 MP+ + Sbjct: 367 MPLAL 371 >gi|319654505|ref|ZP_08008589.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] gi|317393815|gb|EFV74569.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] Length = 374 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 11/173 (6%) Query: 96 GTEVNISHGDSNFYLQSFPESEFPSTK----EEEYVYSFELASSVLKNLVERTHFAMATE 151 G + + G S F L +F EFP EE ++ L + L NL+++T FA A Sbjct: 95 GFTLLLQSGRSKFNLNTFDPEEFPKLPDFAIEESTLF---LKGTDLSNLIKKTGFAAADS 151 Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211 EIR L G+ ++ + +++ V TD HRL +V + + ++P K++ ++ + Sbjct: 152 EIRPILTGVCLDLSGDCMQM--VCTDSHRLGKVQVRNTSD--RDLKFVIPAKSLDKLNKT 207 Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 ++ SE+++ SL RL++G +P+ +IP E+++N Sbjct: 208 FDLQEDVHIYCESENQLIFRSGSLVFYCRLLEGTYPDTSRLIPQDFKAEMKIN 260 >gi|290958477|ref|YP_003489659.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22] gi|260648003|emb|CBG71110.1| putative DNA polymerase III beta chain [Streptomyces scabiei 87.22] Length = 369 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 +A+ L ++ FA++T+ L G+ F I +L+ VATD +R+AVA I Sbjct: 130 LSVAAPELAAALDTVRFAVSTDPGLPMLGGVLFDIEGGNLR--TVATDRYRMAVARAGIT 187 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 +VP V + +R LS + ++++ R+ L+ + + +D +FP+Y Sbjct: 188 GHDEGRVQAVVPTPLV-DAMRALSVGGGTARLAVDGDRVTLDAGDGQAAGQCLDHDFPDY 246 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++P + V+ R+A++ + S Sbjct: 247 RRLLPADGGRRALVDVAAFREALETGPVRSG 277 >gi|257469128|ref|ZP_05633222.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185] gi|317063375|ref|ZP_07927860.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] gi|313689051|gb|EFS25886.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] Length = 376 Score = 60.5 bits (145), Expect = 4e-07, Method: Compositional matrix adjust. Identities = 88/412 (21%), Positives = 170/412 (41%), Gaps = 69/412 (16%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M + ++R D L+ L + I P+ SC + + L G +E T Sbjct: 1 MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETRGENLF---FCGTNLETTITTEM 57 Query: 60 SVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL------ 110 + G I L+ + +R+++D V +S D+N ++ Sbjct: 58 KCEEIVEEGRIVFQHQLVDEYLREIKDEI-------------VTLSVRDNNLFIESSDSS 104 Query: 111 --------QSFP----ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 + FP E++F +E+ F++ S L ++ E+ FA +T +N Sbjct: 105 SEFSLMEAEDFPKILVEADFFQRQED-----FKMNSVELADIFEKVKFAASTSSDNLSIN 159 Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDS 217 + +LK + TD +RL E ++ ++ + + +P + + ++L S +++ Sbjct: 160 CVRLESEVNNLKF--ITTDTYRLVFLEKEL-EKVNEKLEVSIPLNTIEALTKLLRSIEET 216 Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVS 276 +K +++ +E + R+ID FPNY+ ++ + +K L +N + + R+ Sbjct: 217 EIKFYFYNKQVYFKLEDTLIISRVIDLAFPNYKGILGNNTYNKTLLINSEKFLKVLRRII 276 Query: 277 IMSSVRIQA-----VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 I VR A L L + N D+ K E + V Y + I N K+L + Sbjct: 277 IF--VRNNAESKYGATFELEGKDLKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSD 333 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 I N++ + ++ SSN SV I+ K+N N Y++MP+ Sbjct: 334 FIQNLNK----ESNIMLNFISSNGSVKIK---------KENDDNYLYIVMPL 372 >gi|327398176|ref|YP_004339045.1| DNA polymerase III subunit beta [Hippea maritima DSM 10411] gi|327180805|gb|AEA32986.1| DNA polymerase III, beta subunit [Hippea maritima DSM 10411] Length = 365 Score = 60.1 bits (144), Expect = 5e-07, Method: Compositional matrix adjust. Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 10/229 (4%) Query: 118 FPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP K E + ++ + LK L+ T + +I GIF I + +K A AT Sbjct: 113 FPHIKHSENIEKICQIQAKKLKKLIRETIYCPDKNDISREYTGIFIEIEQNYIK--ATAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RL + + I + I+ I R+ S + +++ SE+ I + E+L Sbjct: 171 DHYRLINIKTENTNDIE--ANFIIENAGAALINRL--SLEGEIELYKSENEILIKQENLV 226 Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +S ++I G FP+Y Q ++ S + + L+ AV R SI+S + K+ + L Sbjct: 227 VSSKIISGNFPDYNQILLDRSTSNSVEIEKEKLKDAVKRSSILSENKDITAKIDIKEKTL 286 Query: 296 CMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVV 342 + N + A + +N+ E ++I N K++L+ ++ I +D V+ Sbjct: 287 TLIGQNSEGETAEDIINITPIETEKDLNIKLNSKFILDFLNQIEADTVI 335 >gi|169834795|ref|YP_001715742.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408902|gb|ACA57312.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 381 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 24/291 (8%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+I +S +L I++K+ + +IS F + + + I G +N + E + Sbjct: 65 GNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAKEHTISDILKS 123 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + +YS L + V K+L++ T +A+A +E R L G + + + +K+ A+ DG RL Sbjct: 124 DIIYSLNLDAKVFKSLIDTTSYAVAQDESRPILLGQYIELEKNLIKITAL--DGFRLVSN 181 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE-------SL 235 I Q M I LR LSS DS+ +V L+++ +E ++ Sbjct: 182 SAKIENQHEDMILIHANN------LRNLSSLIDDSTEEVILNKNNNKAIVEVKNKNYVAI 235 Query: 236 SMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + S + EF Y+ +I S ++ V+ L VDR+S++SS + + + + Sbjct: 236 AAS-NIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294 Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341 K + +D N + +N+ N + I FN KY+L+ + NI++ E+ Sbjct: 295 KDSLEIDGNSSVASMKGEVNIINNNFQEEFTIGFNPKYILDALKNINTKEI 345 >gi|294785230|ref|ZP_06750518.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] gi|294486944|gb|EFG34306.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] Length = 364 Score = 60.1 bits (144), Expect = 6e-07, Method: Compositional matrix adjust. Identities = 85/398 (21%), Positives = 172/398 (43%), Gaps = 49/398 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L E NI+ + YL +EF Sbjct: 61 IESEGQVLIKPALLLEYIK---------------LVEEDNINFEKKDGYL-IVNNAEFSI 104 Query: 121 TKEEEYVYSFELASSVLKNLVERT-HFAMATEEIRYYLNG------IFFHINE--EDLKL 171 + Y E+ V+ E T F M+ E++++ N +F I +D L Sbjct: 105 LDDNTYPELTEIIPIVIA--TENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNIL 162 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+TD RL + ++ I K I+VP ++ I +IL D ++ S+ ++ + Sbjct: 163 ELVSTDSFRLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVT 220 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVK 287 + + +L+ FP+++ +I +N DK N L A+ + V+ SS Sbjct: 221 WKDAYFTCKLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVAT 280 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + ++L ++ + + K + +N+ + + N KY+ E IDN VD ++ Sbjct: 281 FNFKGNQLVISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDN------VDKNII 333 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++++NSS +R ++ ++ N Y++MP+ I Sbjct: 334 --IEATNSSSMLRFMEERNE-------NYIYLIMPVNI 362 >gi|194246592|ref|YP_002004231.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali] gi|193806949|emb|CAP18381.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali] Length = 376 Score = 59.7 bits (143), Expect = 7e-07, Method: Compositional matrix adjust. Identities = 80/360 (22%), Positives = 170/360 (47%), Gaps = 31/360 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M +++ LE L +II K P+ + ++ L ++++ I I Sbjct: 1 MHFKIKKEIFLEQLLKIQKIIPHKTFFPIFLGIKIKIKKDFLILESTDGNASIKIKIKNE 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENE-----LGTEVNISHGDSNFYLQ 111 + GS+ +S +I++K+ D ++ K+NE + TE+ + + L Sbjct: 61 SLKIQEEGSLLISGKYFIEIIKKINSDFIEM---KKNENNSLTIKTEL-LEYKLKLMNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 FP+ F E+ E+ ++ K +++ + A +E + L GI F + LK Sbjct: 117 YFPKINFFL----EFKEKIEIKGNIFKKIIKEIKISAAKDEKKSILTGINFIYQKPFLK- 171 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHL 230 ++TD RL+ ++ + K +I++ K + E+ +IL +D ++++ + ++ L Sbjct: 172 -VLSTDYFRLSQKKIKLDFN-YKNFNIVIHYKILEELSKILEYYEDDNLQIYFNSKKMFL 229 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVK 287 L L++GEFP Q ++ + ++++N L + ++RVS +S+ I VK Sbjct: 230 KANDLFFQTTLLEGEFPKTQEILENNFIYKIKLNKEKLIKTLERVSFISNKDINDVSVVK 289 Query: 288 LSLSSD-KLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 L++ + K+ ++ N ++G +E + N+ + E ++I FN KYL +I+ E++ Sbjct: 290 LTIKKEKKIEISSYNDEIGNIVEEILPLENILFKE--IEISFNAKYLEDILKVFLVKEII 347 >gi|28492969|ref|NP_787130.1| DNA polymerase III subunit beta [Tropheryma whipplei str. Twist] gi|28572177|ref|NP_788957.1| DNA polymerase III subunit beta [Tropheryma whipplei TW08/27] gi|28410308|emb|CAD66694.1| DNA polymerase III, beta chain [Tropheryma whipplei TW08/27] gi|28476009|gb|AAO44099.1| DNA polymerase III beta chain [Tropheryma whipplei str. Twist] Length = 377 Score = 59.7 bits (143), Expect = 8e-07, Method: Compositional matrix adjust. Identities = 67/313 (21%), Positives = 141/313 (45%), Gaps = 25/313 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + + R+I + P+ +L++A + + + E A+ Sbjct: 1 MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYETSAKVEFSAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V L+ I +KL D + KE+E +++++ G N+ L P +E+P Sbjct: 61 VIEGGKVLVPGTLISSISQKLPD-EPVEISKEDE---KISLTCGPVNYILNLMPIAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + S V + + A ++I + GI ++ E ++L TD +R Sbjct: 117 LPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDISAVITGINLRLSNESIELT--GTDRYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLNIESLSM 237 +AV ++ V+ S+IV K + E+ + L + +S + V + E+++ + ES + Sbjct: 175 VAVKTLNSVSGHPSDSSVIVSSKTLFEVSKTLGNLESEISVFIKNDGENKV-IGFESGNK 233 Query: 238 SVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-------------SSVR 282 +V LI G +P + + ++ ++ RVS++ ++V Sbjct: 234 TVTSLLISGNYPPVAKLFTEETGHYAILKTSDFLESTKRVSVVVERDEPIEFSFVKNTVT 293 Query: 283 IQAVKLSLSSDKL 295 I+ ++L+S+K+ Sbjct: 294 IKGSGIALASEKV 306 >gi|3953450|gb|AAC83392.1| DnaN [Mycobacterium avium] Length = 258 Score = 59.3 bits (142), Expect = 9e-07, Method: Compositional matrix adjust. Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 18/255 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL D L I E+ + A Sbjct: 13 LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DIVR L + I F+ + G +V ++ G + F L + ++P+ Sbjct: 73 IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNQVALNCGSARFSLPTMAVEDYPT 128 Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T EE + L + + + + A ++ L GI I+ + + L ATD Sbjct: 129 LPTLPEE---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183 Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRI------LSSKDSSVKVSLSESRIHLN 231 RLAV E+ A + +++VP K + E R + + +V + + ++ Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRCRWGRAQVCGKDGLLGIS 243 Query: 232 IESLSMSVRLIDGEF 246 + RL+D EF Sbjct: 244 GNGKRSTTRLLDAEF 258 >gi|33322987|gb|AAQ07230.1|AF496538_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. lactis] Length = 116 Score = 59.3 bits (142), Expect = 9e-07, Method: Composition-based stats. Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%) Query: 89 FFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAM 148 F E + G ++ I+ +++ + S +P E SF L S L+ L+ +T FA+ Sbjct: 2 FTFEVKEGNQIQITSDKADYVINGLDASAYPRLXEIAGT-SFSLPSKTLRELITQTVFAV 60 Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 +TEE R L G+ F +K AVATD HRL+ VDI A ++ S+I+P K Sbjct: 61 STEESRPTLTGVNFSFKNGQIK--AVATDSHRLSQRIVDIAAGPSEDLSLIIPGK 113 >gi|42560562|ref|NP_975013.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492058|emb|CAE76655.1| DNA POLYMERASE III, BETA CHAIN [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320426|gb|ADK69069.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 375 Score = 59.3 bits (142), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 73/358 (20%), Positives = 154/358 (43%), Gaps = 32/358 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIP---------VSCHVLLQANDGLLEIKA----S 47 M ++ R +L+ L A ++I+ KN P +S V + A G+L K+ Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60 Query: 48 GPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDS 106 ++E+ G + + + +++R+L D S ++NEL I +S Sbjct: 61 NSDLEVKQE--------GKVLLKPKYVLEMLRRLDDEFVTFSMVEDNELI----IKTDNS 108 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 +F + ++P E F L +K + + +M + L G+ + Sbjct: 109 DFSIGVLNSEDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTN 168 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 + TD R++ ++I + + I +P K E+ ++L + ++ +K+ + E Sbjct: 169 N--QAIFSTTDSFRISQKILEIQSNNNEDIDITIPFKTALELPKVLDNAEN-LKIIIVEG 225 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA- 285 I I+++ LIDG+FPN Q P + V ++ + + R +++ + A Sbjct: 226 YITFIIDNVIFQSNLIDGKFPNVQIAFPTKFQTIITVKQKSILKVLSRFDLVADDGLPAI 285 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341 V + ++ DK+ ++GK E + + E + I FN ++L++ I ++ D + Sbjct: 286 VNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLNEDRI 343 >gi|260469755|ref|ZP_05813914.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] gi|259028487|gb|EEW29804.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] Length = 384 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 12/186 (6%) Query: 103 HGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162 HG + P ++F +S + ++ L L+ AM +E R+++ G+ Sbjct: 102 HGKGRLTMPILPGADFFLIGAGTQDWSMAIRANELVELLRTCVSAM--DETRHFIQGVLL 159 Query: 163 HINEEDLKLCAV---ATDGHRL---AVAEVDIVAQIAKMP----SIIVPRKAVGEILRIL 212 H+ + A+ ATDGHR+ V ++ A+ I +P + V E++RI Sbjct: 160 HVAAGEDGASALRTAATDGHRVHTVGVEAPELTGGFAERQEGHQGITIPDRTVKELIRIF 219 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 +S V +S ++ + + E++ ++ +LID F +Y ++ + V L A+ Sbjct: 220 DGDESEVTLSGAKGIVTVEGEAIRVTSKLIDAAFADYARLLQAPGAFRISVAAKALDAAI 279 Query: 273 DRVSIM 278 R+ ++ Sbjct: 280 GRLLVL 285 >gi|254192274|ref|ZP_04898763.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur 52237] gi|157987469|gb|EDO95245.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur 52237] Length = 203 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 10/109 (9%) Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI--AKMPSIIVPRKAVGEI 208 ++IRYYLNG+ E++ +L VATDGHRL V ++ ++ + SIIVP + Sbjct: 20 DDIRYYLNGVMVEAREKETRL--VATDGHRLVVYRIECNNEVPAGESISIIVPNAVID-- 75 Query: 209 LRILSSKDSSVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIP 254 R+ SKD+ V+ + R+ + + + ++ +D FPNY+ VIP Sbjct: 76 -RLKLSKDAPDAVTFESADAGRMFFSHDDIRVTFTPVDANFPNYRKVIP 123 >gi|237751288|ref|ZP_04581768.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879] gi|229372654|gb|EEO23045.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879] Length = 370 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 84/385 (21%), Positives = 179/385 (46%), Gaps = 50/385 (12%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I++++S + + + + + +KN I ++ ++ L+ D L +KA+ EI I + + Sbjct: 2 ISIDKSILDQAITNMQSAVNKKNVIDITANISLETIDNNLILKATDHEIYIRTILKTN-S 60 Query: 63 VCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112 + G I V+ + + ++ L D +EV I + N Y++ Sbjct: 61 LQGEIKCAVNGEAIGNFIKGLND-------------SEVIIEQDNENLYIKQNNASVFKI 107 Query: 113 --FPESEFPSTK----EEEYVYSFELASS-VLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 F +E P ++ E++ S ++ ++ +L++L + H E + GI F + Sbjct: 108 PIFEINELPFSQNYKNEQQGFQSIDINNNFLLQSLKKIMHCCNDKETFNIAMQGILFEVK 167 Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLS 224 ++++ + ATD RL + + K I+P+K + EIL++ S+ + +K Sbjct: 168 DKEINI--AATDSKRLGYIQKQ--TECDKDFISIIPKKTLQEILKLFSTDCELYIKPIQD 223 Query: 225 ESRIH---LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++I E++ +LI+ FP+++++I +N +L N + + ++ M+++ Sbjct: 224 SNKIETLCFVSENIEFYAKLINANFPDFKSII--ANKPQLPTLKINKEKILKTLNQMNAI 281 Query: 282 RIQAVKLSLSSDKLCM-TVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISS 338 Q K++ S+K+ T++ + A ++N N PM I ++LLE I NI Sbjct: 282 -CQRAKVTFESNKIIFETLEGINGASASITINDIENHKAEPMTIGLVNRHLLECISNIKQ 340 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKD 363 DE E++ +D +F+ KD Sbjct: 341 DEF---EII--IDDPYKPIFVITKD 360 >gi|270684738|ref|ZP_06222840.1| DNA polymerase III, beta subunit domain protein [Haemophilus influenzae HK1212] gi|270316195|gb|EFA28165.1| DNA polymerase III, beta subunit domain protein [Haemophilus influenzae HK1212] Length = 136 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 SISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLSSSS 60 Query: 64 -CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P+ Sbjct: 61 ENGTFTIPAKKFLDICRTLSDESEITVIFEQDRAL---VQSGRSRFTLATQPAEEYPNLT 117 Query: 123 EEEYVYSFELASSVLKNLV 141 + + FEL + L+ L+ Sbjct: 118 DWQSEVDFELPQNTLRRLI 136 >gi|332829044|gb|EGK01708.1| hypothetical protein HMPREF9455_01856 [Dysgonomonas gadei ATCC BAA-286] Length = 180 Score = 58.9 bits (141), Expect = 1e-06, Method: Compositional matrix adjust. Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 17/193 (8%) Query: 195 MPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 MPS++ + IL+ + D + + ++ + + S S+ L++G +PNY++VI Sbjct: 1 MPSLL----KIATILKGSIKPSDELINIFINGNSVRFEYGSESIVATLLEGNYPNYRSVI 56 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI-ESMN 312 P +NDK L + + L A+ RVS+ ++ VKL LS+D + ++ + D A E++ Sbjct: 57 PQNNDKVLSIGKSELNGAIKRVSVFANQSSSLVKLELSNDIIKLSAQDIDFSTAADETVA 116 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 Y+ + I F L E+I I + + ++ F D S +++ DK Sbjct: 117 CEYSNKQIAIGFKGHLLTELISAIPTPNM---QMSFS-DPSRATLITPVDDKSGD----- 167 Query: 373 KVNAFYVLMPMRI 385 Y+LMPM + Sbjct: 168 --QLTYLLMPMML 178 >gi|295099697|emb|CBK88786.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Eubacterium cylindroides T2-87] Length = 196 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 15/190 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M +++R E L R I + +P + + + + S + I I Sbjct: 1 MHFSIDRKYFYEKLSVVSRAISVFSPLPALSGICIDVKSDQIILTGSDSNVSIRSTIVRG 60 Query: 58 ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--GTEVNISHGDSNFYLQS 112 +D GSI + + L +I+RK+ D + E EL + V IS + F L Sbjct: 61 ELNQLDIDSTGSIVIESKYLLEIIRKM-DCTMV----ELELVDYSLVRISSDNGQFNLNG 115 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P+ + SFEL S LK++V +T FA + ++ R LNG+ F + L C Sbjct: 116 IQSNEYPNIDFSQPTNSFELKSKDLKDIVSQTSFACSDKDTRPVLNGVNFKASNNTL-YC 174 Query: 173 AVATDGHRLA 182 + TD +RLA Sbjct: 175 S-GTDSYRLA 183 >gi|121582887|ref|YP_973329.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans CJ2] gi|120596149|gb|ABM39587.1| DNA polymerase III beta subunit family protein [Polaromonas naphthalenivorans CJ2] Length = 366 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 64/260 (24%), Positives = 128/260 (49%), Gaps = 30/260 (11%) Query: 54 TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 TG +P V ++A L+ +I+ + S ++ E ++ +S G + L + Sbjct: 53 TGTLPNLV-----FQLTAKLVLNIINNCATETKCSISQDKE---DLRLSFGGARIKLTRY 104 Query: 114 PESE---FPSTKEEEY---VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 E E F ++E+ + FE + ++ K ++ + F + ++ RY L G++F + Sbjct: 105 TEKEVDFFKWNSKDEHNEAIGHFE-SQNLRKAIMSVSRF-YSDDDQRYQLRGVYFQSIQG 162 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---- 223 L L A T+G RLA ++V + +I+ + V ++ I+ + + V++S+ Sbjct: 163 RLVLAA--TNGTRLAEKITNLV--VRDFRPMIIGGEYVEALVSIIKNDEEDVEISIRGGN 218 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 + + + + S+ LI G +P+Y+++IP S D ++VN L A+DR M +V Sbjct: 219 DATAVIFSTRNFSIKCPLIGGAYPSYRSIIPAS-DHHVQVNAAALIAALDR---MEAVSG 274 Query: 284 QAVKLSLSSDKLCMTVDNPD 303 V L+ S++ +TV+ PD Sbjct: 275 NFVHLNFSNE--IVTVETPD 292 >gi|227494190|ref|ZP_03924506.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831924|gb|EEH64307.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 269 Score = 58.5 bits (140), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 57/258 (22%), Positives = 115/258 (44%), Gaps = 17/258 (6%) Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI-VAQI 192 + + + + A AT+E L GI I ED + +ATD +RLA+ A+ Sbjct: 21 AQLFAQTITQVSVAAATDETIPLLTGIRMEI--EDDTITLLATDRYRLAMRTFKWEPAEP 78 Query: 193 AKMPSIIVPRKAVGEILRILSSKDS-----SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 S++V K + ++ + ++S S S + +S I + + L+DGE+P Sbjct: 79 GISTSMLVKAKTLNDVAKSMTSAGSVEIAFSTTETTGQSLIGFRAGTRHTTSTLMDGEYP 138 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 + + P + VN L +AV RVS+++ + +V+L S+ ++ + D +A Sbjct: 139 PVRRLFPETTATTALVNRNELLEAVKRVSLVAEQKT-SVRLGFSAGQVVLEAGQDDNAQA 197 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 E+++ + FN +YL + +++ V F + + G+++ Sbjct: 198 NETIHAQLQGEDIRTAFNPQYLQAGLSALNT-----QFVRFSFTDAAKPAVLTGQNEPL- 251 Query: 368 NNKDNKVNAFYVLMPMRI 385 ++ + Y+LMP+R Sbjct: 252 --AEDDLAFRYLLMPIRF 267 >gi|8037924|gb|AAF71536.1|AF255728_2 DNA polymerase III beta subunit [Streptococcus pyogenes] Length = 189 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 19/193 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 ++ ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 2 IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112 + G+I + A +I+ L D IS KE E +V ++ G S L+ Sbjct: 62 NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169 ++P +E L + +LK+++ T FA + +E R L G+ HI N +D Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175 Query: 170 KLCAVATDGHRLA 182 K AVATD HR++ Sbjct: 176 K--AVATDSHRMS 186 >gi|282863706|ref|ZP_06272764.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] gi|282561407|gb|EFB66951.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] Length = 373 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 80/365 (21%), Positives = 149/365 (40%), Gaps = 63/365 (17%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ER + E + A R++ ++ +PV +LL A+DG L + SG + E + A+ A Sbjct: 1 MEFLSERGALAESVAWAARVLPARSPVPVLGGLLLDASDGRLRV--SGLDFEASAAVEAE 58 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 G + V L DI + L DG + G+ ++ D+ F L P ++ Sbjct: 59 AATVRPGRVLVMGRRLLDICKVLPDGPVRCAVE----GSRFTVTASDARFGLSVLPLDDY 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHF---------AMATEEIRYYLNGIFFHINEEDL 169 P+ L+ V+ F A ++ L GI ++ + Sbjct: 115 PALPPLPE----------LRGAVDAGEFAAAVADVAVAAGRDDTLPALTGIRLRLDGSTM 164 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L A+D +R AV + A ++ + ++V + + EI R L ++ V V+L + Sbjct: 165 TLA--ASDRYRYAVRTLPWKAADPEVAADVLVSARRLTEIARTL-ARSGPVGVALDTGSV 221 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---------- 278 +VRL+DG P++ + ++ + L +AV RVS++ Sbjct: 222 GFEHAGARTTVRLLDGGLPSHDTLFALADPAVAVTDRAALVEAVRRVSVVADGGSPLQLT 281 Query: 279 ------SSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 +SV +QA + ++S +L T++ D M + FN YL++ Sbjct: 282 FTGGPDASVLLQAGYEDDVASQRLPATLEGADG---------------MTVAFNPAYLMD 326 Query: 332 IIDNI 336 + + Sbjct: 327 ALSSF 331 >gi|237744670|ref|ZP_04575151.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] gi|229431899|gb|EEO42111.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] Length = 364 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 81/394 (20%), Positives = 170/394 (43%), Gaps = 41/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117 ++ G + + LL + + KL + I+F K++ + S D N Y PE Sbjct: 61 IESEGQVLIKPALLLEYI-KLIEEENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVA 175 P E F + L+E+ F ++ + N I + L+L V+ Sbjct: 116 IIPIVVATENTLKFTI-------LLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VS 166 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RL + + + + ++VP ++ I +I D ++ S+ R+ L + Sbjct: 167 TDSYRLVYMKKTLNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDA 224 Query: 236 SMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLS 291 S +L+ FP+++ +I +N DK+ N L A+ + V+ S+ + Sbjct: 225 YFSCKLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFK 284 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++L ++ + + K + +N+ + + N KY+ E IDN+ + ++ + Sbjct: 285 GNQLVISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------E 335 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++NSS +R ++ ++ N Y++MP+ I Sbjct: 336 ATNSSSMLRFMEERNE-------NYIYLIMPVNI 362 >gi|33322985|gb|AAQ07229.1|AF496537_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. lactis] Length = 153 Score = 58.2 bits (139), Expect = 2e-06, Method: Compositional matrix adjust. Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 4/140 (2%) Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 E+ +I+ D +KV L +S+I E+LS RL++G +P+ ++P + ++ + Sbjct: 3 ELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRLLEGAYPDVDRLLPTESTTSVQFAVS 62 Query: 267 NLRQAVDRVSIMSSV-RIQAVKLSLS-SDKLCMTVDN-PDMGKAIESMNV-YYNECPMDI 322 +L Q + R S+++ R AV+++L+ +D+ + N P++GK E + + I Sbjct: 63 DLMQTLSRASLLTHANRTNAVQMTLNVADQTVLVSGNSPEVGKIEEEVGFSSLTGRDLTI 122 Query: 323 CFNYKYLLEIIDNISSDEVV 342 FN Y+ + +D V+ Sbjct: 123 SFNPDYMAAALRASVTDSVI 142 >gi|237738340|ref|ZP_04568821.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC 9817] gi|229420220|gb|EEO35267.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC 9817] Length = 376 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 94/398 (23%), Positives = 177/398 (44%), Gaps = 41/398 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MKI +ER + L+ L + I P+ SC + D L + E IT + Sbjct: 1 MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLF-FCGTNLETTITTEMKC 59 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL---QSFPE 115 V G I L+ + +++L+D + F E + + S S F L + FP+ Sbjct: 60 KEVIESGKIVFQHQLVEEYLKELKD--EFVVFSEIDGNLVIESSDSSSEFSLMNVEDFPK 117 Query: 116 ---SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E S KEE F++ S L ++E+ +A ++ +N + + E+ KL Sbjct: 118 ILVDEDFSQKEE----IFKINSIELAEILEKVKYAASSSSDNLSINCV--RMENENKKLK 171 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLN 231 + TD +RL E +I +I + + +P V + ++L S +S+ + +I Sbjct: 172 FITTDTYRLVYLEKEI-EKINENIDVSIPLNTVEALTKLLRSIESTDISFYFINRQIFFK 230 Query: 232 IESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAV 286 +E + + R+ID FPNY+ ++ S +K+L +N + + R++I + + A Sbjct: 231 MEEVLVISRIIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGA- 289 Query: 287 KLSLSSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + +K M V ++ K E + V Y + I N K+L + + ++ ++ + Sbjct: 290 --TFYLEKKEMQVHGVNEVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNK----D 343 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + +SNSSV I+ ++ + + YVLMP+ Sbjct: 344 ITLEFIASNSSVKIKEEEAN---------DYLYVLMPL 372 >gi|126348431|emb|CAJ90154.1| putative DNA polymerase III beta chain [Streptomyces ambofaciens ATCC 23877] Length = 383 Score = 57.4 bits (137), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 27/243 (11%) Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FA T+ L GI F + + L L VATD +R+AVA VD A +VP Sbjct: 164 RFAAGTDPGLPMLAGILFDLEGDSLHL--VATDRYRMAVARVDAGAHDGPRVQALVPVPL 221 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 G +R L S D V +++ + L + + +D +FP+Y+ ++ + + V+ Sbjct: 222 AG-AMRALLSHDEPVGLTVGGDSVTLETGGGRTAGQCLDHDFPDYRRLVHLPSGRRTLVD 280 Query: 265 CTNLRQAVDRVSIMSSVRIQAV--KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 R+A++ VR V + S D + V + ++ ++ P D Sbjct: 281 VPVFRKALE----SGPVRTGEVSEQDGTSHDLSVLRVAD----DGTVTVREDGDDHPDDF 332 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 + YLLE ++ + +V + + + IR + + + F +LMP Sbjct: 333 AVDRGYLLEALEAGGR-----ERLVLEFGAPTAPLAIR---------RPDDASTFSLLMP 378 Query: 383 MRI 385 +R+ Sbjct: 379 VRL 381 >gi|89098180|ref|ZP_01171065.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] gi|89087037|gb|EAR66153.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] Length = 368 Score = 57.0 bits (136), Expect = 4e-06, Method: Compositional matrix adjust. Identities = 80/346 (23%), Positives = 153/346 (44%), Gaps = 33/346 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +E+ + + + +++ K++IP+ VL+QA L AS I +P Sbjct: 1 MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60 Query: 59 ---ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ--SF 113 +++ GS + +D+ +KL+ ISF + +V +S + L+ Sbjct: 61 EGAVNIESEGSAVFTKDC-FDVTKKLK--GSISF---ELIDQKVIVSQDKTKTRLEFGVM 114 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P E + N+V +T FA ++ E+R L GI +++ Sbjct: 115 DAEDYPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNF-- 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL Q + S+ V K + ++L+ S D S +V + + +++ Sbjct: 173 VATDSHRLGKV---TTGQSEETMSVTVHAKKLEQVLK---SFDFSTEVLVFPTELNIAFA 226 Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+DG FP+ +IP ++L +N ++D +S +S R V LS++ Sbjct: 227 NGHTIYYTRLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAIS--REGIVMLSIN 284 Query: 292 SDKLCMTVDNPDMG-KAIESMNVYYNEC---PMDICFNYKYLLEII 333 + V+ +G A S + Y +++ F+ KY+L+ + Sbjct: 285 G----LFVELAALGDTAKGSREIAYESFEGESLEVGFSAKYVLDAL 326 >gi|23193212|gb|AAN14435.1|AF319585_2 DNA polymerase III beta chain [Bacillus cereus] Length = 160 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 13/163 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 +E+P + E + F++ + +LK+++ +T FA++T E R Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETR 159 >gi|308069816|ref|YP_003871421.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681] gi|305859095|gb|ADM70883.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa E681] Length = 372 Score = 57.0 bits (136), Expect = 5e-06, Method: Compositional matrix adjust. Identities = 87/404 (21%), Positives = 182/404 (45%), Gaps = 53/404 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V+ + + E L A + I K IP+ L++A + + + + I + + Sbjct: 1 MNIVVDSALLAEALEDASKAISTKAIIPILSCFLIEATEDRVTVTGTDDRATIQSFVEEN 60 Query: 61 VDV--CGSITVSAHLLYDIVRKL--------QDGAQISFFKENELGTEVNISHGDSNFYL 110 +D+ GS + LL DI++K+ ++G Q++ N+ E+ I+ + Sbjct: 61 IDIKETGSAALPKVLL-DILQKINGKIELQVKNGNQVTIKSRNK---EIEITG------M 110 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDL 169 P E E+V E+ LKNL+++T FA + + G+ ++ + Sbjct: 111 PPEEYPAPPEINENEFV---EIKGKDLKNLIKKTVFAADIDGKSLPIITGV--NVILQTG 165 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 K+ VAT+ HRLA AE + I + + ++ + + E+ +I++ D V+ S+S Sbjct: 166 KIQMVATNRHRLAHAEREF--DIGNIGTAVIEARGIIELQKIVNDND-EVEFGFSKSSGG 222 Query: 230 LNIESLSMSVRLI------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVR 282 I + + + R I +G +P+ + + E+ VN L ++++ + ++ + Sbjct: 223 EVIYAFARTERFIFYSRVLEGIYPDTTHTMAIKAVTEITVNRKELIESLELIFTLAKEEK 282 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 AV S+S ++ + + GKA E++ + +N ++ N KY+L+ + + +D Sbjct: 283 NNAVTFSVSEKEINIRGKGKETGKATENITPISFNGENFNLTLNAKYVLDALKVLEND-- 340 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V L + S + + +S +FY+++P R+ Sbjct: 341 -----VITLGYTGSLKPLTLRSDES---------SFYIVLPYRV 370 >gi|23193215|gb|AAN14437.1|AF319586_2 DNA polymerase III beta chain [Bacillus cereus] gi|23193221|gb|AAN14441.1|AF319588_2 DNA polymerase III beta chain [Bacillus thuringiensis serovar galleriae] Length = 160 Score = 56.6 bits (135), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 13/163 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 +E+P + E + F++ + +LK+++ +T FA++T E R Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETR 159 >gi|197294171|ref|YP_001798712.1| DNA polymerase III beta subunit [Candidatus Phytoplasma australiense] gi|171853498|emb|CAM11337.1| DNA polymerase III beta subunit [Candidatus Phytoplasma australiense] Length = 378 Score = 56.2 bits (134), Expect = 7e-06, Method: Compositional matrix adjust. Identities = 50/217 (23%), Positives = 112/217 (51%), Gaps = 9/217 (4%) Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 L S K +++ + + + E R L G ++ LK A+ATD R++ ++ + Sbjct: 133 LKVSSFKKMIKEVNISSSKNEKRPILTGSNLIYEKKTLK--ALATDSFRISYKKIKLDFP 190 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 ++++P K++ E+++IL D+ ++K+ + +I L I++L L++G +P Q Sbjct: 191 YFDF-NMVIPNKSLEELIKILEYYDNKNLKIYSDDKKIFLKIDNLWFCTSLLEGNYPQIQ 249 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSDKLC-MTVDNPDMGK 306 + + +N ++ + ++R+S+ S V V L+ +K+ +++ N ++G Sbjct: 250 EFNLKNYPFVVHLNKDDVMKVLERISLFFSKEEVNKNIVLFKLTEEKIIEISISNENLGT 309 Query: 307 AIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 A+E + + +I FN K+L +I+ ++S E+V Sbjct: 310 ALEKIIPLKVTSEKFEIAFNAKHLEDILKVLTSSEIV 346 >gi|289807127|ref|ZP_06537756.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 102 Score = 56.2 bits (134), Expect = 9e-06, Method: Compositional matrix adjust. Identities = 34/116 (29%), Positives = 67/116 (57%), Gaps = 14/116 (12%) Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 QA R +I+S+ + + V+L +S ++L +T +NP+ +A E ++V Y M+I FN Y+ Sbjct: 1 QAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYV 60 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++++ + + V R+ ++S ++ +D S+ +A YV+MPMR+ Sbjct: 61 LDVLNALKCETV-------RIMLTDSVSSVQIEDAASQ-------SAAYVVMPMRL 102 >gi|20372920|emb|CAD30325.1| DNA polymerase III subunit protein [Streptomyces caespitosus] Length = 117 Score = 56.2 bits (134), Expect = 9e-06, Method: Composition-based stats. Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGSLSLSGFDYEVSARVSVDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G++ VS LL DI R L + +IS G V + G S F L + P E+P Sbjct: 61 VEEDGTVLVSGRLLADICRALPNRPVEIS-----TDGVRVTVVCGSSRFTLHTLPVEEYP 115 Query: 120 S 120 + Sbjct: 116 A 116 >gi|152965735|ref|YP_001361519.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] gi|151360252|gb|ABS03255.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] Length = 391 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 84/385 (21%), Positives = 152/385 (39%), Gaps = 28/385 (7%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--PASVD 62 V+ + E L +I R+ +P+ V L L ++ + ++ T + P Sbjct: 24 VDSKALAEALTDVNALIGRRPPVPILAGVRLDVEGDQLTLRRTNYDVVNTATLQLPQVGH 83 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPESEFPST 121 S VSA IVR + GA I + G E GD + L + ++P+ Sbjct: 84 PARSTVVSASAFAAIVRAIGPGASIILTLLHRSGREFLRIAGDGVTYQLITMDAGDWPAI 143 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF-FHINEEDLKLCAVATDGHR 180 +E + ++V + V+ A + L I + E L A ATD R Sbjct: 144 PADEVQH----IATVSADDVQALALAGTAATSDFTLPIIHAVRLTERQGSLVAAATDRFR 199 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L +V+ + + +VP A+ I R L+ ++ V +S + I + S S V+ Sbjct: 200 LL--DVNTLHPVPAGFQALVPTDALEHIAR-LAKREGEVTISTVDEFIVFVVGSRSCRVK 256 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV- 299 +DGE+P ++ P + V+ +L +A+ R+ ++++ R V+L+ + + + Sbjct: 257 CVDGEYPKVDSLWPPESPIAATVDRGDLARALRRL-MVATPRNTPVELAFGRNVVVLIAG 315 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D D+ D N ++LL+ +D + D V F V I Sbjct: 316 DKTDLDATTTVATTLTGAEAFDAALNPQFLLDGLDAVGG-----DRVTFAFTVPYRPVVI 370 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 G + N Y+ MP+R Sbjct: 371 TG----------GRPNTRYLQMPVR 385 >gi|92112114|gb|ABE73748.1| DNA polymerase subunit B [Azoarcus communis] Length = 125 Score = 55.8 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 14/139 (10%) Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P+YQ VIP ++ + + L A+ R +I+++ + + V++ L L + N + + Sbjct: 1 PDYQRVIPQNHPGLVALPRQALLSALQRAAILTNEKFRGVRMVLDDGALRIVSSNSEQEE 60 Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 A E + + Y+ +DI FN YLL++++N+SS + + +R + NSS I Sbjct: 61 AQEELEIDYHGAKLDIGFNVTYLLDVLNNLSS-----ETIEWRFNDGNSSALI-----TL 110 Query: 367 KNNKDNKVNAFYVLMPMRI 385 N+ K YV+MPMRI Sbjct: 111 PGNEHFK----YVVMPMRI 125 >gi|23193217|gb|AAN14438.1|AF319587_1 DNA polymerase III beta chain [Bacillus thuringiensis serovar berliner] Length = 160 Score = 55.8 bits (133), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 13/163 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 +E+P + E + F++ + +LK+++ +T FA++T E R Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETR 159 >gi|149200630|ref|ZP_01877633.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155] gi|149136279|gb|EDM24729.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155] Length = 153 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER + + A +I + T+ + H LL L I A+G + IT + A+ Sbjct: 1 MKFTIERDRLNNAVKKAGSVISARPTVSIMGHFLLDVQANHLVITATGLDQTITLTLEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G TVSA +L +V++L +G +S +E G VN+ + F LQS +FP Sbjct: 61 IEQEGKATVSAKILSQLVQRLPNGDVSVSL---DERGM-VNVVCARNAFSLQSLDPLQFP 116 Query: 120 STKEEEYVYSFELASSVL 137 EE F +++S L Sbjct: 117 IEGREESRREFMISTSQL 134 >gi|329944739|ref|ZP_08292818.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529875|gb|EGF56765.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 350 Score = 55.5 bits (132), Expect = 1e-05, Method: Compositional matrix adjust. Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 31/368 (8%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 +PV V L+A L + + E+ + A V+ G + VS LL DI + L + Sbjct: 1 MPVLAGVRLEAKGSSLVLASFDYEVSAHCEVVADVEEDGVVLVSGRLLADIAKALPN--- 57 Query: 87 ISFFKENEL---GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVER 143 K +L G +V +S G + F L + ++P+ V + + + L V + Sbjct: 58 ----KPVDLEVEGNKVAVSCGSARFSLAAMAADDYPALPVMPAV-AGTIDAHDLARAVAQ 112 Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV-AQIAKMPSIIVPR 202 A + ++ L + I E L +ATD +RLA+ E+ A + ++ Sbjct: 113 VSIAASRDDTLPLLTSV--QIEVEGSSLVLMATDRYRLAMRELTWSPANTDLSTTALLKA 170 Query: 203 KAVGEILRIL-SSKDSSVKVSLSESR---IHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 + + ++ + L SS D +V +S + I + L DG++P + + P S Sbjct: 171 RTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGRRTTSLLTDGDYPPVRRLFPESTS 230 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318 V L AV RVS+++ R + +S + L + D +A E + + Sbjct: 231 IHATVGTDELMAAVRRVSLVAD-RSTPIHMSFTQGNLELDAGQGDDAQATEQLVAHLEGD 289 Query: 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS--VFIRGKDKDSKNNKDNKVNA 376 + FN YLL+ + ++ V RLD +++S + G D +D+ Sbjct: 290 DISTAFNPGYLLDGLGALNQPYV-------RLDFTHASKPAVLTGMDS-IGGTEDSTFR- 340 Query: 377 FYVLMPMR 384 Y+LMP+R Sbjct: 341 -YLLMPIR 347 >gi|229587310|ref|YP_002860348.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] gi|229260366|gb|ACQ51403.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 55.5 bits (132), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 24/291 (8%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G+I +S +L I++K+ + +IS F + + + I G +N + E + Sbjct: 65 GNINISVTILNAIIKKMSN-EEISLFIDPKNNDVLKIKQGRNNSKIALAKEHTISDILKS 123 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + +YS L + K+L+E T +A+A +E R L G + + +K+ A+ DG RL Sbjct: 124 DIIYSLNLNPKIFKDLIESTSYAVAQDESRPILLGQYIELENNLIKITAL--DGFRL--- 178 Query: 185 EVDIVAQIAKMPSIIVPRKAV-GEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRL 241 ++ AK+ + + + L+ LSS DS+ ++ L+++ +E + + Sbjct: 179 ----ISNSAKIENKHKDKILIHANNLKNLSSLIDDSTEELILNKNNNKAIVEVKNKNYAA 234 Query: 242 IDG------EFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 I EF Y+ +I S ++ V+ L VDR+S++SS + + + + Sbjct: 235 IAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294 Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341 K + +D N + +N+ N E I FN KY+L+ + NI++ E+ Sbjct: 295 KDSIEIDGNSSVASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEI 345 >gi|320009941|gb|ADW04791.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC 33331] Length = 367 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 82/373 (21%), Positives = 146/373 (39%), Gaps = 40/373 (10%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64 +ER + + + A R++ ++ +PV +LL A+ G L + SG + E + + Sbjct: 1 MERGALTDAVSRAARVLPARSPVPVLGGLLLDADTGRLRV--SGLDFEASARVETQAHTV 58 Query: 65 --GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + V L I + L +G + G+ + ++ S F L P ++P+ Sbjct: 59 RPGKVLVMGRRLLAICKVLPEGPVECAVE----GSRLTVTGDGSRFGLSILPLDDYPALP 114 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + + V + A ++ L GI ++ + L ATD +R A Sbjct: 115 PLPDVRG-TVDAGEFGSAVAQVAVAAGRDDTLPTLTGIRLGLDGSTMTLA--ATDRYRFA 171 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 V + A+ + + ++V + + EI R L + V VS+ +VRL Sbjct: 172 VRTLPFEAKAPDVTADVVVSARRLTEIARSL-GRSGRVDVSVDGGSAGFEHAGTRTTVRL 230 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD- 300 +DG P + + + ++ L +AV RVS+++ L MT Sbjct: 231 LDGRLPRHDKLFALGDTAVAVMDRARLVEAVRRVSVVAD----------GGSPLQMTFSP 280 Query: 301 NPDMGKAIESM---NVYYNECP--------MDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 PD +++ +V P M + FN YL D +SS E D V R Sbjct: 281 GPDGSALLQAGFEDDVAAQRLPAAFDGAGEMTVAFNPAYL---TDALSSFE--DATVRMR 335 Query: 350 LDSSNSSVFIRGK 362 L I G+ Sbjct: 336 LLGPGQRAMISGE 348 >gi|222874687|gb|EEF11818.1| predicted protein [Populus trichocarpa] Length = 296 Score = 55.1 bits (131), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68 +L +L I+ER++T+P+ +VL++ L++ S EI+I D + T Sbjct: 164 VLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 223 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYV 127 V A L DI++ + +S + ++ + G S F LQ+ P +FP +E + Sbjct: 224 VGARKLIDILKTMPGDQTVSLETQQ---AKMVLKGGKSRFTLQTLPAEDFPLVQEAAAFG 280 Query: 128 YSFELASSVLKNLV 141 SF + VLK+L+ Sbjct: 281 PSFSVPQKVLKDLL 294 >gi|195941090|ref|ZP_03086472.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. EC4024] Length = 102 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 14/116 (12%) Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 QA R +I+S+ + + V+L +S +++ +T +NP+ +A E ++V Y M+I FN Y+ Sbjct: 1 QAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEAEEILDVTYAGAEMEIGFNVSYV 60 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++++ + + V R+ ++S ++ +D S+ +A YV+MPMR+ Sbjct: 61 LDVLNALKCENV-------RILLTDSVSSVQIEDAASQ-------SAAYVVMPMRL 102 >gi|229496336|ref|ZP_04390056.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229316914|gb|EEN82827.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 392 Score = 54.7 bits (130), Expect = 2e-05, Method: Compositional matrix adjust. Identities = 87/409 (21%), Positives = 175/409 (42%), Gaps = 47/409 (11%) Query: 1 MKITVERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ + ++ LL + +++ N +PV + L + D L + S + G +P Sbjct: 1 MQFKIASGELSTLLQNQSKVVPTVYNEMPVLTYFLFEIQDNNLYVTGSDGMMRSRGVLPV 60 Query: 60 SVDVCGSITVSAHL--LYDIVRKLQDG-------AQISFFKENELGTEVNISHGDSNFYL 110 + G+ T + H + + V+ L D A+ S G + + D Y Sbjct: 61 -ITSEGNATFAVHPKDILEYVKGLPDQPLLFDYEAETSTLLMTFEGGYIRFATSDGELYP 119 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + + E E E + +++S ++ ++ T +MA + R L + F + L Sbjct: 120 KDDKDRE-----EAETAHVATMSASAMRRGLDLTIGSMAEDARRPILASVCFDFKAKYLA 174 Query: 171 LCAVATD----GHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSS-KDSSVKV 221 + A +T+ V + IV ++ +P+K + +L+S D V + Sbjct: 175 MVATSTEILTKYTDSTVVDPSIVEPADVRVQSPYQFCLPQKMANFLRALLASFTDEEVTL 234 Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSS 280 S ++ + + ++ S RL++G +P Y +VIP N + + A+ R+ S MSS Sbjct: 235 SHTDRKAFFKVGNIEASTRLVEGRYPPYDSVIPRDNPHRISIEGRLFVPAIKRMNSFMSS 294 Query: 281 VRIQAV-KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP----MDICFNYKYLLEIIDN 335 V ++S+ + + +++D D+ +A + + E P M + F + +I+ Sbjct: 295 PNHPLVMQMSIEGNLMTVSMDVQDVRQAEQRFPI---ENPSNLSMKLRFKVHSFIALINT 351 Query: 336 ISSDEVVDDEVVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 I S +VF + D+S + V I S+N KD ++ V+MP+ Sbjct: 352 IES-----SNIVFEIADASRAMVII-----PSENPKDTELTN--VIMPI 388 >gi|229113628|ref|ZP_04243075.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] gi|228669824|gb|EEL25220.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] Length = 418 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/293 (20%), Positives = 128/293 (43%), Gaps = 29/293 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 25 MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 84 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 DV G++ V ++ D+ +KL +N L + G S F L +F S Sbjct: 85 EDVSVISEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNTL----QVISGKSKFTLNTFKVS 139 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 140 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 197 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + +K S+K+S ++ L+ ++ + Sbjct: 198 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 256 Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++G++P+ Y+NVI VN + +A++++ + +S Sbjct: 257 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 301 >gi|324323932|gb|ADY24975.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 394 Score = 54.7 bits (130), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 61/293 (20%), Positives = 128/293 (43%), Gaps = 29/293 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 DV G++ V ++ D+ +KL +N L + G S F L +F S Sbjct: 61 EDVSVISEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNTL----QVISGKSKFTLNTFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + +K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++G++P+ Y+NVI VN + +A++++ + +S Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277 >gi|298345814|ref|YP_003718501.1| DNA polymerase III subunit beta [Mobiluncus curtisii ATCC 43063] gi|315654388|ref|ZP_07907296.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 51333] gi|298235875|gb|ADI67007.1| DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 43063] gi|315491423|gb|EFU81040.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 51333] Length = 380 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R + E + + R I + + V V ++A + +E + E+ + A Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116 V G V LL + R L A + F TE N H G L Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKF-----ATEDNYLHITCGSFKQKLIMMHSE 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P + + ++ ++ + + + A + +E L GI + + KL +AT Sbjct: 116 EYPPLPQMPE-SAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLS---ESRIHLNI 232 D +R+A+ E+ ++V K + + + I ++ D V V + S I L Sbjct: 173 DRYRMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 + ++ DG +P+ + + P + V + RV+I+SS + Q + L + Sbjct: 233 NGRVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFT 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 S +L N A +++ N + + FN + LLE + I DE RL Sbjct: 293 SGQLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAI-------DEPYARLS 345 Query: 352 SSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + V I G+ +++ +DN + Y++MP+R Sbjct: 346 FKDEAKPVVITGQKEET--GEDN-LTFRYLIMPIR 377 >gi|256026449|ref|ZP_05440283.1| DNA polymerase III, beta chain [Fusobacterium sp. D11] gi|289764461|ref|ZP_06523839.1| DNA polymerase subunit III [Fusobacterium sp. D11] gi|289716016|gb|EFD80028.1| DNA polymerase subunit III [Fusobacterium sp. D11] Length = 364 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 79/394 (20%), Positives = 170/394 (43%), Gaps = 41/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117 ++ G + + LL + + KL + I+F K++ + S D N Y PE Sbjct: 61 IESEGQVLIKPALLLEYI-KLIEEENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVA 175 P E F + L+E+ F ++ + N I + L+L V+ Sbjct: 116 IIPIVVATENTLKFTI-------LLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VS 166 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RL + + + + ++VP ++ I +I D ++ S+ R+ L + Sbjct: 167 TDSYRLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDA 224 Query: 236 SMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLS 291 S +L+ FP+++ +I +N DK+ N L A+ + V+ S+ + Sbjct: 225 YFSCKLLSLNFPDFRPLINNTNHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFK 284 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++L ++ + + K + +N+ + + N KY+ E IDN+ + ++ + Sbjct: 285 GNQLVISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------E 335 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++NSS ++ ++ ++ + Y++MP+ I Sbjct: 336 ATNSSSMLKIMEEGNE-------DYIYLVMPVNI 362 >gi|315657690|ref|ZP_07910572.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492162|gb|EFU81771.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 380 Score = 54.3 bits (129), Expect = 3e-05, Method: Compositional matrix adjust. Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R + E + + R I + + V V ++A + +E + E+ + A Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116 V G V LL + R L A + F TE N H G L Sbjct: 61 EVTDPGVAVVDGKLLSETARALPSRADLVKF-----ATEDNYLHITCGSFKQKLIMMHSE 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P + + ++ ++ + + + A + +E L GI + + KL +AT Sbjct: 116 EYPPLPQMPE-SAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE---SRIHLNI 232 D +R+A+ E+ ++V K + + + I ++ D V V + S I L Sbjct: 173 DRYRMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 + ++ DG +P+ + + P + V + RV+I+SS + Q + L + Sbjct: 233 NGRVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFT 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 S +L N A +++ N + + FN + LLE + I DE RL Sbjct: 293 SGQLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAI-------DEPYARLS 345 Query: 352 SSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + V I G+ +++ +DN + Y++MP+R Sbjct: 346 FKDEAKPVVITGQKEET--GEDN-LTFRYLIMPIR 377 >gi|260494531|ref|ZP_05814661.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] gi|260197693|gb|EEW95210.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] Length = 364 Score = 54.3 bits (129), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 79/394 (20%), Positives = 170/394 (43%), Gaps = 41/394 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117 ++ G + + LL + + KL + I+F K++ + S D N Y PE Sbjct: 61 IESEGQVLIKPALLLEYI-KLIEEENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVA 175 P E F + L+E+ F ++ + N I + L+L V+ Sbjct: 116 IIPIVVTTENTLKFTI-------LLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VS 166 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RL + + + + ++VP ++ I +I D ++ S+ R+ L + Sbjct: 167 TDSYRLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDA 224 Query: 236 SMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLS 291 S +L+ FP+++ +I +N DK+ N L A+ + V+ S+ + Sbjct: 225 YFSCKLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFK 284 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++L ++ + + K + +N+ + + N KY+ E IDN+ + ++ + Sbjct: 285 GNQLVISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------E 335 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++NSS ++ ++ ++ + Y++MP+ I Sbjct: 336 ATNSSSMLKIMEEGNE-------DYIYLVMPVNI 362 >gi|156564023|ref|YP_001429765.1| DNA-directed DNA polymerase III beta chain [Bacillus phage 0305phi8-36] gi|154622720|gb|ABS83600.1| DNA-directed DNA polymerase III beta chain [Bacillus phage 0305phi8-36] Length = 361 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 31/298 (10%) Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF---KENELGTEVNISHGDSNFYLQSF 113 +PA V G V A V KL Q F K L + + G F S+ Sbjct: 57 VPAGVKETGKFVVKAKKFIAYVSKLD--VQTVMFAISKGGGLQLKTKPAKGQQTFI--SY 112 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAM--ATEEIRYYLNGIFFHINEEDLKL 171 E FP T + + +SF+++ V K L+ FA + E R L GI F + LKL Sbjct: 113 QEESFPKTPKLQSKFSFDMSGLVFKKLINNVAFAADSSREASRPILQGIQFVSDGNLLKL 172 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +TDG +A + +I P ++++ +K++ ++++ D V + E+ H Sbjct: 173 T--STDGFTIA----NYKRKIKSDPFNVVLGKKSLVNCAKVVAD-DEKVTMQACENN-HF 224 Query: 231 NIESLSMSVRL--IDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIM---SSVRIQ 284 +++ + L + G FPN NV+P D + + L +DR SIM S + Sbjct: 225 IVKTGLATYHLPTLAGNFPNTDNVLPGKEFDLQFLADRDELLGLLDRASIMIDGSGI--- 281 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 L K+ +T N G E + ++ + K +++++ +I SD + Sbjct: 282 ---LQFEKGKVTLT-GNSQEGNFSEFIMTKLQGEATEVSVSVKRIIDVVKHIDSDMIT 335 >gi|21219691|ref|NP_625470.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)] gi|6468432|emb|CAB61592.1| putative DNA polymerase III beta chain [Streptomyces coelicolor A3(2)] Length = 386 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 32/249 (12%) Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FA + L G+ F + + L L VATD +R+AVA + V +IVP Sbjct: 160 RFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPAPL 217 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 V + +R L D + ++ R+ L S R + +FP+Y+ ++ + + V+ Sbjct: 218 V-DAMRALLGDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVTVD 276 Query: 265 CTNLRQAVD----RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI----ESMNVYYN 316 R+A++ RV+ QA +S+ S TVD+ G I + + + Sbjct: 277 VPEFREALESGPVRVAEDREPGRQARDVSVLS-----TVDD---GTVIVCGEGAPDEEAD 328 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + + YLL+ + D +V + F ++ + + IR D + A Sbjct: 329 GAAHHVGVDRGYLLDALAAADRDRLV---LEFG-PAATAPLAIRRMDDE---------GA 375 Query: 377 FYVLMPMRI 385 F VLMP+R+ Sbjct: 376 FSVLMPVRL 384 >gi|256789227|ref|ZP_05527658.1| DNA polymerase III beta chain [Streptomyces lividans TK24] gi|289773118|ref|ZP_06532496.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] gi|289703317|gb|EFD70746.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] Length = 372 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 32/249 (12%) Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FA + L G+ F + + L L VATD +R+AVA + V +IVP Sbjct: 146 RFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPAPL 203 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 V + +R L D + ++ R+ L S R + +FP+Y+ ++ + + V+ Sbjct: 204 V-DAMRALLDDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVAVD 262 Query: 265 CTNLRQAVD----RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE--- 317 R+A++ RV+ QA +S+ S TVD+ G I + +E Sbjct: 263 VPEFREALESGPVRVAEDREPGRQARDVSVLS-----TVDD---GTVIVCGDGAPDEEAD 314 Query: 318 -CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + + YLL+ + D +V + F ++ + + IR D + A Sbjct: 315 GAAHHVGVDRGYLLDALAAADRDRLV---LEFG-PAATAPLAIRRMDDE---------GA 361 Query: 377 FYVLMPMRI 385 F VLMP+R+ Sbjct: 362 FSVLMPVRL 370 >gi|23193209|gb|AAN14433.1|AF319584_2 DNA polymerase III beta chain [Bacillus cereus] Length = 156 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 13/159 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V GSI + A +IV+KL ++ +IS EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 +E+P + E + F++ + +LK+++ +T FA++T Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155 >gi|332294863|ref|YP_004436786.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM 14796] gi|332177966|gb|AEE13655.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM 14796] Length = 370 Score = 53.9 bits (128), Expect = 4e-05, Method: Compositional matrix adjust. Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 50/237 (21%) Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218 G+ F E+ L + A TDG RLA+ ++++ +I + + +K E+++ D++ Sbjct: 170 GVNFKTKEKTLTIAA--TDGFRLAIFKINLDEEIDM--NFTISKKCAQEVIKF----DAT 221 Query: 219 VKVSL-SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 V +S +++ L+ +SV+ ++ E+PNY+ IP N + +N R+ + I Sbjct: 222 VPISYQTQTHWVLSTHEKMLSVKKLNYEYPNYEKAIPSDNKYKFYIN----REDFIKKLI 277 Query: 278 MSSVRIQAVKLSLSSDKLCMT-----VDNPDMGKAIESMNVYYNECPMDICFNYK--YL- 329 +S + + VK+SL + L + + + K++E + DI F +K YL Sbjct: 278 FTSSQSEIVKISLKDNTLNIQSSDSRIKTKTLIKSVEEVK--------DIEFLFKSSYLI 329 Query: 330 --LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L+I D ++EV+F N + + +N +N Y+ +P R Sbjct: 330 DGLKIFD--------EEEVLFTYKDENKPITL-----------ENNINTTYITLPAR 367 >gi|170581927|ref|XP_001895901.1| DNA polymerase III, beta subunit [Brugia malayi] gi|158597001|gb|EDP35242.1| DNA polymerase III, beta subunit, putative [Brugia malayi] Length = 99 Score = 53.9 bits (128), Expect = 5e-05, Method: Compositional matrix adjust. Identities = 27/89 (30%), Positives = 51/89 (57%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R+ +L L ++ER+N I + + ++A G +++ A+ +I I ++ A Sbjct: 1 MRFSIGRTXLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF 89 V G + VSAH L+DIV+KL ++F Sbjct: 61 VSTEGEVKVSAHTLHDIVKKLPADLNVNF 89 >gi|304390482|ref|ZP_07372435.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326238|gb|EFL93483.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 380 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R + E + + R I + + V V ++A + +E + E+ + A Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116 V G V LL + R L A + F TE N H G L Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKF-----ATEDNYLHITCGSFKQKLIMMHSE 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P + + ++ ++ + + + A + +E L GI + + KL +AT Sbjct: 116 EYPPLPQMPE-SAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLS---ESRIHLNI 232 D +R+A+ E+ ++V K + + + I ++ D V V + S I L Sbjct: 173 DRYRMALKEMPWAGVQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 + ++ DG +P+ + + P + V + RV+I+SS + Q + L + Sbjct: 233 NGRVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFT 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 S +L N A +++ N + + FN + LLE + I DE RL Sbjct: 293 SGQLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAI-------DEPYARLS 345 Query: 352 SSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + V I G+ +++ +DN + Y++MP+R Sbjct: 346 FKDEAKPVVITGQKEET--GEDN-LTFRYLIMPIR 377 >gi|23193183|gb|AAN14415.1|AF319576_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 160 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQTGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 +E+P + E + F++ + +LK+++ +T FA+++ E R Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETR 159 >gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str. Okra] gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str. Okra] Length = 561 Score = 53.5 bits (127), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 20/192 (10%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 F A +EIR LNGI + NE +A DG+RLA+ + + K P I+ Sbjct: 356 FQKAKDEIRPILNGICINKNE------FIALDGYRLALRKGNFET---KEPVIVA----- 401 Query: 206 GEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 +++++++ + +VK+ +++ + + L + G + NY ++IP + + ++ + Sbjct: 402 ADLIKVINKVKYECNVKIYYNDNYVKFKFDDLEIVGYRRQGNYINYNSIIPENYNTKVTL 461 Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDIC 323 ++ +D + + + V L +DKL + +N D+ ES+ + P++I Sbjct: 462 K---IKPILDILKDYKKNKFKVVDLDFQNDKLIIKANN-DIATVEESITIELQGEPLEIS 517 Query: 324 FNYKYLLEIIDN 335 FN YL++ N Sbjct: 518 FNADYLIDAFKN 529 >gi|23193186|gb|AAN14417.1|AF319577_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 160 Score = 53.1 bits (126), Expect = 6e-05, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 13/163 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 ++ GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 +E+P + E + F++ + +LK+++ +T FA+++ E R Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETR 159 >gi|23193206|gb|AAN14431.1|AF319583_2 DNA polymerase III beta chain [Bacillus cereus] Length = 156 Score = 53.1 bits (126), Expect = 7e-05, Method: Compositional matrix adjust. Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 13/159 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 D GSI + A +IV+KL +D +IS EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 +E+P + E + F++ + +LK+++ +T FA++T Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155 >gi|71893361|ref|YP_278807.1| DNA polymerase III subunit beta [Mycoplasma hyopneumoniae J] gi|71851488|gb|AAZ44096.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae J] Length = 378 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 72/334 (21%), Positives = 144/334 (43%), Gaps = 23/334 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAI 57 MK T+E+ I + I P+S L GL I + ++ I Sbjct: 1 MKFTIEKKIIEWQIERMQSAILNNINSPLSSFFLKLTRSGLFIISTNSELSYKVFINKKD 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS + L D++RK Q+SF + +G+E+ + D+ F + S Sbjct: 61 LIEIHDVGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDALFSKTTRDSSF 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E+ + + K ++ T FA + L+ I ++ E L ATD Sbjct: 116 FPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 R A +++I + +I V K + + I D +++++ S+I ++L++ Sbjct: 174 TSRFASEKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTI 229 Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 R+ E+ + N++P ++ L +N ++ +D+ +I++ + + LSLS + L Sbjct: 230 QSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNAL 289 Query: 296 CMTVDNPDMGKA-IESMNVYYNECPMDICFNYKY 328 + D G++ +++ NV +D FN ++ Sbjct: 290 KGYISQYDSGQSNVQTKNV------LDFRFNPRF 317 >gi|303250285|ref|ZP_07336485.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252050|ref|ZP_07533950.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650901|gb|EFL81057.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860519|gb|EFM92532.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 205 Score = 52.8 bits (125), Expect = 9e-05, Method: Compositional matrix adjust. Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 12/161 (7%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 ++R LNG++F++ C AT+GH + ++ A K I+P + + +I Sbjct: 23 GKNDVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPKRKGFIMPNELIKQI 78 Query: 209 LRILS----SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC--SNDKELR 262 L I K +++V+ ++ I + +++ + I+G+FPN V P SN+K Sbjct: 79 LLIKPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLCAVYPLKESNNKTKT 138 Query: 263 VNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLCMTVDN 301 N + A ++ + + + +LS + +++DN Sbjct: 139 YNANYINLAAKATKLLKPIIGKDAGIDFNLSDNSSILSIDN 179 >gi|213422866|ref|ZP_03355900.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 59 Score = 52.8 bits (125), Expect = 9e-05, Method: Composition-based stats. Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 3/58 (5%) Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 YYLNG+ F +L+ VATDGHRLAV + + A + S+IVPRK V E++R+L Sbjct: 1 YYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLPSH-SVIVPRKGVIELMRML 55 >gi|23193189|gb|AAN14419.1|AF319578_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] gi|23193197|gb|AAN14425.1|AF319580_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] gi|23193200|gb|AAN14427.1|AF319581_2 DNA polymerase III beta chain [Bacillus mycoides] gi|23193203|gb|AAN14429.1|AF319582_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 160 Score = 52.8 bits (125), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 13/163 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GSI + A +IV+KL ++ +IS EN T+ I G S F L Sbjct: 61 DAGKEIVEIKQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 +E+P + E + F++ + +LK+++ +T FA+++ E R Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETR 159 >gi|170596510|ref|XP_001902790.1| DNA polymerase III, beta subunit [Brugia malayi] gi|158589311|gb|EDP28360.1| DNA polymerase III, beta subunit, putative [Brugia malayi] Length = 190 Score = 52.4 bits (124), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R+ +L L ++ER+N I + + ++A G +++ A+ +I I ++ A Sbjct: 21 MRFSIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 80 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100 V G + VSAH L+DIV+KL ++ F+ NE V Sbjct: 81 VSTEGEVKVSAHTLHDIVKKLPADLDVN-FEVNEFANSVT 119 >gi|72080344|ref|YP_287402.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448] gi|71913468|gb|AAZ53379.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448] Length = 378 Score = 52.0 bits (123), Expect = 1e-04, Method: Compositional matrix adjust. Identities = 72/334 (21%), Positives = 144/334 (43%), Gaps = 23/334 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAI 57 MK T+E+ I + I P+S L GL I + ++ I Sbjct: 1 MKFTIEKKIIEWQIERMQSAILNNINSPLSSFFLKLTRSGLFIISTNSELSYKVFINKKD 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS + L D++RK Q+SF + +G+E+ + D+ F + S Sbjct: 61 LIEIYDVGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDALFSKTTRDSSF 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E+ + + K ++ T FA + L+ I ++ E L ATD Sbjct: 116 FPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 R A +++I + +I V K + + I D +++++ S+I ++L++ Sbjct: 174 TSRFASEKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTI 229 Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 R+ E+ + N++P ++ L +N ++ +D+ +I++ + + LSLS + L Sbjct: 230 QSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNAL 289 Query: 296 CMTVDNPDMGKA-IESMNVYYNECPMDICFNYKY 328 + D G++ +++ NV +D FN ++ Sbjct: 290 KGYISQYDSGQSNVQTKNV------LDFRFNPRF 317 >gi|326777822|ref|ZP_08237087.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] gi|326658155|gb|EGE43001.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] Length = 375 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 15/286 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLL----EIKASGPEIEITGA 56 M+ +ERS + + + A R++ ++ +PV +LL G ++ SG + E + Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 57 IPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + +V G + V L DI + L +G + G+ +S + F L P Sbjct: 61 VDVDAEVVRPGKVLVMGRRLLDICKVLPEGPVECAVE----GSRFTVSGDGARFGLSVLP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++PS + + + + V A ++ L GI ++ + + L A Sbjct: 117 LDDYPSLPPLPQLRG-AVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAA- 174 Query: 175 ATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 TD +R AV + A + ++V + + EI R L + V V+L Sbjct: 175 -TDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSLG-RSGLVSVALDAGSAGFEHA 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +VRL++G P ++ + ++ V+ L +AV RVS+++ Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVA 278 >gi|41057666|ref|NP_958120.1| gp15 [Burkholderia phage Bcep43] gi|40737653|gb|AAR89306.1| gp15 [Burkholderia phage Bcep43] Length = 193 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 15/113 (13%) Query: 144 THFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVP 201 TH A ++IRYYLNGI DL + VATDGHR + + A + S+I+P Sbjct: 14 TH--AAKQDIRYYLNGILLEAAVNGDLHI--VATDGHRAFIGRIAGGATSWPEFTSLIIP 69 Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 A+ +++K V V+ + +R L S IDG FP+++ ++P Sbjct: 70 TDAI-----KVAAKKGDVTVAPAGARYALG----STLFDAIDGRFPDWRRIVP 113 >gi|23752326|ref|NP_705641.1| gp15 [Burkholderia phage Bcep781] gi|23507193|gb|AAN38016.1| gp15 [Burkholderia phage Bcep781] Length = 193 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 15/113 (13%) Query: 144 THFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVP 201 TH A ++IRYYLNGI DL + VATDGHR + + A + S+I+P Sbjct: 14 TH--AAKQDIRYYLNGILLEAAVNGDLHI--VATDGHRAFIGRIAGGATSWPEFTSLIIP 69 Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 A+ +++K V V+ + +R L S IDG FP+++ ++P Sbjct: 70 TDAI-----KVAAKKGDVTVAPAGARYALG----STLFDAIDGRFPDWRRIVP 113 >gi|182437190|ref|YP_001824909.1| DNA polymerase III subunit beta [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465706|dbj|BAG20226.1| putative DNA polymerase III beta subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 375 Score = 52.0 bits (123), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 15/286 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLL----EIKASGPEIEITGA 56 M+ +ERS + + + A R++ ++ +PV +LL G ++ SG + E + Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 57 IPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + +V G + V L DI + L +G + G+ +S + F L P Sbjct: 61 VDVDAEVVRPGKVLVMGRRLLDICKVLPEGPVECAVE----GSRFTVSGDGARFGLSVLP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++PS + + + + V A ++ L GI ++ + + L A Sbjct: 117 LDDYPSLPPLPQLRG-AVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAA- 174 Query: 175 ATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 TD +R AV + A + ++V + + EI R L + V V+L Sbjct: 175 -TDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSLG-RSGLVSVALDAGSAGFEHA 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +VRL++G P ++ + ++ V+ L +AV RVS+++ Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVA 278 >gi|229051325|ref|ZP_04194839.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] gi|228722018|gb|EEL73449.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] Length = 394 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 29/293 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 DV G++ V ++ D+ +KL +N L + G S F L +F S Sbjct: 61 EDVSVIAEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNIL----QVISGKSKFTLNTFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++G++P+ Y+NVI VN + +A++++ + +S Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277 >gi|207093110|ref|ZP_03240897.1| DNA polymerase III subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 227 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 44/195 (22%), Positives = 92/195 (47%), Gaps = 19/195 (9%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS- 213 L GI +++ L V TD RL+ +++ ++ + S I+P++A+ EIL++ Sbjct: 7 LAGILMQFDQKHQTLSVVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYE 66 Query: 214 --SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 S S +++ E+ H + +LIDG +P+YQ ++P + +++ Sbjct: 67 NFSFKSDGMLAVVENETH------TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKES 120 Query: 272 VDRVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYK 327 + S +SS +KL+L ++ L ++D+ A S+ + E + N K Sbjct: 121 IKLCSSLSST----IKLTLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAK 176 Query: 328 YLLEIIDNISSDEVV 342 + LE ++ + + + V Sbjct: 177 FFLEALNALGTTQFV 191 >gi|229125330|ref|ZP_04254425.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] gi|228658129|gb|EEL13874.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] Length = 394 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 29/293 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 DV G++ V ++ D+ +KL +N L + G S F L +F S Sbjct: 61 EDVSVIAEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNIL----QVISGKSKFTLNTFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++G++P+ Y+NVI VN + +A++++ + +S Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277 >gi|399398|sp|P31861|DPO3B_RHOCA RecName: Full=DNA polymerase III subunit beta gi|250529|gb|AAB22385.1| DnaN=3' of GyrB [Rhodobacter capsulatus, SB1003, Peptide, 70 aa] Length = 70 Score = 51.6 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 26/60 (43%), Positives = 36/60 (60%) Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L VATDGHRLA + + MP +IVPRK V E+ +L ++ + VS+SE+R L Sbjct: 10 LRCVATDGHRLARIDAVLPEGANGMPGVIVPRKTVNELRNVLDDDEAQIAVSVSETRCAL 69 >gi|312600975|gb|ADQ90230.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 168] Length = 362 Score = 51.6 bits (122), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 20/268 (7%) Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 GS + L D++RK Q+SF + +G+E+ + D+ F + S FP Sbjct: 51 VGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDALFSKTTRDSSFFPEINF 105 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E+ + + K ++ T FA + L+ I ++ E L ATD R A Sbjct: 106 EQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATDTSRFAS 163 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 +++I + +I V K + + I D +++++ S+I ++L++ R+ Sbjct: 164 EKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTIQSRIFT 219 Query: 244 GEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 E+ + N++P ++ L +N ++ +D+ +I++ + + LSLS + L + Sbjct: 220 IEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNALKGYISQ 279 Query: 302 PDMGKA-IESMNVYYNECPMDICFNYKY 328 D G++ +++ NV +D FN ++ Sbjct: 280 YDSGQSNVQTKNV------LDFRFNPRF 301 >gi|257437734|ref|ZP_05613489.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] gi|257200041|gb|EEU98325.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] Length = 173 Score = 51.2 bits (121), Expect = 2e-04, Method: Compositional matrix adjust. Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 3/129 (2%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83 ++TIPV +LL+A L + E+ I I A+V G + ++A LL +V ++ Sbjct: 41 RSTIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIDANVKEPGEVVLNAKLLSSMVSRMPS 100 Query: 84 GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVER 143 G QI+ + E G + I G + F +QS ++FP + + + VL++++ER Sbjct: 101 G-QINI-QSAENG-KTTIQSGVAQFEIQSMNPTDFPELPNTGAEETLNIKTGVLRDMIER 157 Query: 144 THFAMATEE 152 T +A++ +E Sbjct: 158 TLYAVSQDE 166 >gi|54019971|ref|YP_115517.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 232] gi|53987144|gb|AAV27345.1| DNA polymerase III, beta chain [Mycoplasma hyopneumoniae 232] Length = 378 Score = 51.2 bits (121), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 23/334 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAI 57 MK T+E+ I + I P+S L GL I + ++ I Sbjct: 1 MKFTIEKKIIEWQIERMQSAILNNVNSPLSSFFLKLTRSGLFIISTNSELSYKVFINKKD 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS + L D++RK Q+SF + +G+E+ + D+ F + S Sbjct: 61 LIEIYDVGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDAIFSKTTRDSSF 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E+ + + K ++ T FA + L+ I ++ E L ATD Sbjct: 116 FPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 R A +++I + +I V K + + I D +++++ S+I ++L++ Sbjct: 174 TTRFASEKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTI 229 Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 R+ E+ + N++P ++ L +N ++ +D+ +I++ + + LS+S + L Sbjct: 230 QSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSMSKNAL 289 Query: 296 CMTVDNPDMGKA-IESMNVYYNECPMDICFNYKY 328 + D G++ +++ NV +D FN ++ Sbjct: 290 KGYISQYDSGQSNVQTKNV------LDFRFNPRF 317 >gi|111220716|ref|YP_711510.1| DNA polymerase III subunit beta [Frankia alni ACN14a] gi|111148248|emb|CAJ59918.1| DNA polymerase III, beta chain [Frankia alni ACN14a] Length = 408 Score = 50.8 bits (120), Expect = 3e-04, Method: Compositional matrix adjust. Identities = 79/336 (23%), Positives = 130/336 (38%), Gaps = 30/336 (8%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY-----LQSFPE-SEF 118 G + V LL DIV L + + G + + G F L +PE F Sbjct: 82 GRVLVPGRLLADIVHSLP----ATTVEVAVDGDRLVLRCGSVRFTVPLMDLADYPELPRF 137 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E F A V + A +E L + I+ L L A TD Sbjct: 138 PAPIGEVNTLGFAAA-------VGQVAPAAGRDETVPVLTAVRLEISGHGLILAA--TDR 188 Query: 179 HRLAVAEVDIVAQIAKMPSII-VPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLS 236 +RLAV + + ++ VP K + E+ R +S V + L++ + + Sbjct: 189 YRLAVRAIPWQPTVDDPWALAHVPAKVLAEVARTPTSASRIVIGLDLADPAGARLGLAAA 248 Query: 237 MS---VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 VRLIDG FPNY+ ++P T A R + + R ++ + + D Sbjct: 249 GRQTIVRLIDGTFPNYRKLLP-ETAAYTVTAQTAALAAAVRRVAVVATRTAPLRFTFTRD 307 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF-RLDS 352 ++ + +A E++ V Y+ + + FN YLL+ + + DE V ++ Sbjct: 308 QVVAEAGDGSGAQASETIPVEYSGPELSVLFNPSYLLDGLGAVEDDEATIGFVAADPAEA 367 Query: 353 SNSSVFIRGKDKDSKNNKDNKV---NAF-YVLMPMR 384 + + GKD AF Y+LMP+R Sbjct: 368 TARPAVLTGKDSGGVRGPGGGPVDEGAFRYLLMPIR 403 >gi|147668838|ref|YP_001213656.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp. BAV1] gi|146269786|gb|ABQ16778.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp. BAV1] Length = 419 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 15/162 (9%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 A E+ R L + F + D KL V+ DG+RLA+ ++D + +++ R + + Sbjct: 133 AKEDNRPVLQSVLFKV--ADGKLTMVSADGYRLAMVKLDFDGDEGQ---VLINRDELRGV 187 Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-------DGEFPNYQNVIPCSNDKEL 261 + L + V+V +S L+ SL + LI DG FP Y+ +IP + + + Sbjct: 188 ISALR-RAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLIPANFNTFV 246 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 + +AV + ++S + + L++ + KL M+ +PD Sbjct: 247 SFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKLTMS--SPD 286 >gi|255028896|ref|ZP_05300847.1| DNA polymerase III subunit beta [Listeria monocytogenes LO28] Length = 146 Score = 50.4 bits (119), Expect = 4e-04, Method: Compositional matrix adjust. Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 13/148 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111 V+ G I + + DIVR+L ++ +I E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKN 139 E+P E + ++ +VLKN Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKN 144 >gi|239927656|ref|ZP_04684609.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] gi|291435994|ref|ZP_06575384.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] gi|291338889|gb|EFE65845.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] Length = 375 Score = 50.1 bits (118), Expect = 6e-04, Method: Compositional matrix adjust. Identities = 53/257 (20%), Positives = 105/257 (40%), Gaps = 17/257 (6%) Query: 50 EIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109 E + A V G + VS LL D+ + G + +++ E+ ++ + F Sbjct: 50 ETSTRATLAADVLETGHVLVSGRLLADVTAAMPTG-PVDVVADDQ---ELTLAAPGTTFT 105 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF-----AMATEEIRYYLNGI-FFH 163 L + ++P E + E A +V +L+ +M +E L G H Sbjct: 106 LPTMDRRDYP-----ELPQAPEAAGTVDGDLLAAAVVHAAQASMPDKEAAGSLEGFRGVH 160 Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 I + L A+D +R+ + ++VP + + L+ V + Sbjct: 161 IAADGDHLTVSASDRYRIVRHRIPWTPDGETADDLLVPAAHLAATCKQLAGGPVRVSFTN 220 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSSV 281 + + L ++L+++ R + FPN N P + LR + L +AV R ++++ Sbjct: 221 NITVAALANDTLTVTSRTVATPFPNIDNFFPNPAAASGWLRADAAELLEAVKRAALVNHK 280 Query: 282 RIQAVKLSLSSDKLCMT 298 QA++LS D++ +T Sbjct: 281 EEQAIRLSFDQDQVTVT 297 >gi|260062690|ref|YP_003195770.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501] gi|88784257|gb|EAR15427.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501] Length = 362 Score = 49.7 bits (117), Expect = 7e-04, Method: Compositional matrix adjust. Identities = 80/353 (22%), Positives = 145/353 (41%), Gaps = 28/353 (7%) Query: 25 NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH-LLYDIVRKLQD 83 NT+PV HV ++ G + + AS E + A GSIT H L I++ L D Sbjct: 24 NTLPVLSHVKVETQKGHVFMTASNLETTASVLFEAKCK-PGSITCIPHNTLSSILKNLPD 82 Query: 84 GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL-ASSVLKNLVE 142 + + + I GD+++ L P +FP E + EL A+ L+ L Sbjct: 83 APVSITIESDGVIQNAEIVCGDADYKLPGLPPDDFPRIAEHPWEEKIELEAAHFLQTLKT 142 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 T F T+E+ + N I ++ E L +A H L + + + K ++V Sbjct: 143 ATRFTDQTDELSGFQNII---LDAESGYLEVMAMTRHLLFKRQ---ITKAKKKFMMMVTT 196 Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSNDK- 259 KA + S +S K+ LSE++ L I +++++ VR + + P YQ + S D+ Sbjct: 197 KAAT---YLASGAFTSEKIKLSEAKNMLLITGDNIAVHVRQPEWKPPQYQLLF--SKDRV 251 Query: 260 --ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE 317 N L+ + R+ R + D+ + ++ D A + E Sbjct: 252 QHGWEANTEELKTKLSRLLSACQSRFAIADFDMKKDRTTLKIE--DEAYATRGQEIVPAE 309 Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370 +Y + + ++ V ++ V ++N++ FI D++N K Sbjct: 310 L-TGSAVKVRYQIATL-QLALSVVEEERVKLEFQAANTATFI-----DTENTK 355 >gi|294782354|ref|ZP_06747680.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294480995|gb|EFG28770.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 364 Score = 49.7 bits (117), Expect = 8e-04, Method: Compositional matrix adjust. Identities = 67/351 (19%), Positives = 157/351 (44%), Gaps = 24/351 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +++ ++ I++ P + ++ + + K + E+E+ + Sbjct: 1 MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++V G + + LL + + KL + I+F K++ + ++ F + E+ +P Sbjct: 61 IEVEGQVLIKPSLLLEYI-KLVESENINFEKKDGY-----LIVNNAEFSI--LDETTYPE 112 Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVAT 176 KE V S +A S NL+E+ F ++ + N I + ++L + T Sbjct: 113 IKE---VVSTTIAKENSQKFSNLLEKVKFLTNSSSNLDALFNSIKITFKDNFVELAS--T 167 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RL + + ++K I+VP ++ I +IL + V ++ SE ++ + + Sbjct: 168 DSYRLIYLKKPLENVVSK--DILVPADSMAVIYKILKDLNEDVTLATSEDKLIVTWKDAY 225 Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRV---SIMSSVRIQAVKLSLSS 292 S +L+ FP++ +I N DK+ N L ++ +V + S+ + Sbjct: 226 FSCKLLSLSFPDFIPLITNPNHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKG 285 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 ++L ++ + + K + +N+ + + N KY+ E +DN + +++ Sbjct: 286 NQLLISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDNTDKNIIIE 335 >gi|289432029|ref|YP_003461902.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT] gi|289432171|ref|YP_003462044.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT] gi|288945749|gb|ADC73446.1| DNA polymerase III beta chain [Dehalococcoides sp. GT] gi|288945891|gb|ADC73588.1| DNA polymerase III beta chain [Dehalococcoides sp. GT] Length = 419 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 14/166 (8%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 A E+ R L + F + D KL V+ DG+RLA+ ++D + +++ R + + Sbjct: 133 AKEDNRPVLQCVLFKV--ADGKLTMVSADGYRLAMVKLDFDGDEGQ---VLINRDELRGV 187 Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-------DGEFPNYQNVIPCSNDKEL 261 + L + V+V +S L+ SL + LI DG FP Y+ +IP + + Sbjct: 188 ISALR-RAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLIPADFNTFV 246 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 + +AV + ++S + + L++ + KL M+ + D G+A Sbjct: 247 SFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKLTMSSPD-DKGQA 291 >gi|296506465|ref|YP_003667699.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] gi|296327052|gb|ADH09979.1| DNA polymerase III, beta subunit [Bacillus thuringiensis BMB171] Length = 394 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 29/293 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 61 VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 DV G++ V ++ D+ +KL +N L + G S F L F S Sbjct: 61 EDVSVIAEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNIL----QLISGKSKFTLNIFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEFKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + ++G++P+ Y+NVI VN + +A++++ + +S Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277 >gi|213021808|ref|ZP_03336255.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 97 Score = 49.3 bits (116), Expect = 0.001, Method: Composition-based stats. Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQIS 88 G+ TV A +DI R L +GA+I+ Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA 89 >gi|168178719|ref|ZP_02613383.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916] gi|182671283|gb|EDT83257.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916] Length = 329 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 16/190 (8%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 +AMA +EIR LNG+ + +E +A DG+RLA+ + +IVP + Sbjct: 124 YAMAKDEIRLILNGLCINNSE------FIALDGYRLALRK----GNFQTKEPVIVPADLI 173 Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 I ++ +D VK+ +++ + L + G++ NY+++IP + ++ + Sbjct: 174 KVIKKVKYERD--VKIYYNDNYVKFKFGDLEVIGNRQIGDYINYKSIIPEDYNTKVTLET 231 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 + +D + + L +KL + +N ++ ES+ + P++I FN Sbjct: 232 ---KSILDILKDYKKNKFNIADLDFQKNKLIIKANN-EVATVEESITIELQGEPLEISFN 287 Query: 326 YKYLLEIIDN 335 YL++ N Sbjct: 288 ADYLIDAFKN 297 >gi|325123494|gb|ADY83017.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2] Length = 138 Score = 49.3 bits (116), Expect = 0.001, Method: Compositional matrix adjust. Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116 C G TV A L +I + L A I E++ + G+S F L + P Sbjct: 61 EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117 Query: 117 EFP 119 ++P Sbjct: 118 DYP 120 >gi|300088280|ref|YP_003758802.1| DNA polymerase III subunit beta [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528013|gb|ADJ26481.1| DNA polymerase III beta chain [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 419 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 15/162 (9%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 A E+ R L + F + D KL V+ DG+RLA+ ++D + +++ R + + Sbjct: 133 AKEDNRPVLQCVLFKV--ADGKLTMVSADGYRLAMVKLDFDGDEGQ---VLINRDELRGV 187 Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-------DGEFPNYQNVIPCSNDKEL 261 + L + V+V +S L+ SL + LI DG FP Y+ +IP + + Sbjct: 188 ISALR-RAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLIPAYFNTFV 246 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 + +AV + ++S + + L++ + KL M+ +PD Sbjct: 247 SFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKLTMS--SPD 286 >gi|255019006|ref|ZP_05291132.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL F2-515] Length = 143 Score = 48.5 bits (114), Expect = 0.002, Method: Compositional matrix adjust. Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 7/107 (6%) Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCM 297 RL++G +P+ +IP EL +N QA+DR S+++ R +KL +L + ++ + Sbjct: 5 RLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEV 64 Query: 298 TVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341 + ++P++G E NV+ + + I FN KY+++ + D++ Sbjct: 65 SSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 109 >gi|158314395|ref|YP_001506903.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] gi|158109800|gb|ABW11997.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] Length = 409 Score = 48.1 bits (113), Expect = 0.002, Method: Compositional matrix adjust. Identities = 67/359 (18%), Positives = 140/359 (38%), Gaps = 31/359 (8%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 D+L L +++RK+ P + ++ DG L + + P+ ++ +P G Sbjct: 21 DLLAALATVGAVLDRKSRPPWNATLITADPDGELTLTGASPDATVSVRLPGVARSAGRFL 80 Query: 69 VSAHLLYDIVRKL------QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 V L + + L +D ++ + I+ GD L P E P Sbjct: 81 VDGWALTQMCKALVRGEHRRDTDELPVQLDGSFPPAPTITIGDYTVPLTGLPPEEHPGAC 140 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + L + L+ V+R A+ ++ L G+ H++ ATD +RLA Sbjct: 141 QPAPTIA-TLDRAALRAAVDRVLPAVGRDDTLRVLTGM--HMSFTPGLATVAATDRYRLA 197 Query: 183 VAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSES-----RIHLNIES 234 VD++ P+ +++P K + + ++ + S R+ Sbjct: 198 ---VDVLPATVTRPAGQELLLPAKILAACAETWTGSSVTIGHRRAASVHDVDRVTFTCGQ 254 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRV-NCTNLRQAVDRV-SIM-----SSVRIQAVK 287 ++S+ G +P ++ ++ + + V + + V RV +I+ +S I + Sbjct: 255 TTVSLVETGGSYPPWRKLLGSLDPQHTAVFDRATVAAHVARVLAILTAHPSTSRPIMTMT 314 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNEC----PMDICFNYKYLLEIIDNISSDEVV 342 L+L+ D L + P+ G + + + + FN YL + + +S D V+ Sbjct: 315 LTLTPDGLRVAPLLPEHGARVSAPTLPATTSITGGTVRWAFNAAYLRDALAALSGDTVL 373 >gi|237740569|ref|ZP_04571050.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] gi|229422586|gb|EEO37633.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] Length = 364 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 75/397 (18%), Positives = 176/397 (44%), Gaps = 47/397 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +++ ++ I++ P + ++ + + K + E+E+ + Sbjct: 1 MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL---QSFPE-S 116 ++V G + + LL + + KL + I+F K++ + ++ F + ++PE Sbjct: 61 IEVEGQVLIKPSLLLEYI-KLVESEDINFEKKDGY-----LIVNNAEFSILDDTTYPEIK 114 Query: 117 EFPST---KEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLC 172 E PST KE ++ L+E+ F ++ + N I + ++L Sbjct: 115 ELPSTTIAKENSLQFAM---------LLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIELA 165 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 + TD +RL + + I K I+VP ++ I +IL + V ++ E ++ + Sbjct: 166 S--TDSYRLIYLKKSLENMINK--DILVPADSMSVIYKILKDLNEDVTLATIEDKLIVTW 221 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRV---SIMSSVRIQAVKL 288 + S +L+ FP+++ +I S +DK+ N L ++ +V + S+ Sbjct: 222 KDAYFSCKLLSLSFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATF 281 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + ++L ++ + + K + +N+ + + N KY+ E IDN + ++ Sbjct: 282 NFKVNQLLISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFIDNTDKNIII------ 334 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++NSS ++ ++ ++ N Y++MP+ I Sbjct: 335 --EATNSSSMLKIIEEANE-------NYIYLVMPVNI 362 >gi|240047137|ref|YP_002960525.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae HRC/581] gi|239984709|emb|CAT04681.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae] Length = 366 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 67/320 (20%), Positives = 143/320 (44%), Gaps = 33/320 (10%) Query: 28 PVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDV--CGSITVSAHLLYDIVRKLQDG 84 P+S + L +GL I +G E+ I + +D+ G + L +I++K ++ Sbjct: 28 PLSGYYLKATREGLSIISTNG-ELSFKSFINSDKIDIIEVGICLIDGFFLKNIIKKSEN- 85 Query: 85 AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERT 144 F TE IS +++F + FP + ++ + LK ++ T Sbjct: 86 ----FINFEIKSTEALISWENASFSKVLKDHTIFPEVNFDPIGIKVKVNAKELKKAIKNT 141 Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI------ 198 HFA ++ L+ I +I +D L ATD +R A ++ I + SI Sbjct: 142 HFAASSNVNSPILSSI--NIKSQDNILIFSATDTNRFASDKISISEPVDIDVSINSENLK 199 Query: 199 -IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +P + GEI ++ +SE++++ ++L++ ++++ + + NVIP Sbjct: 200 NFIPSEVEGEI-----------ELFVSENKVNFTYDNLTIQTKVLNVPYKDISNVIPKPE 248 Query: 258 D--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA-IESMNVY 314 L++ + +D+ ++++ + A+ LS ++ ++ + G++ ++S V Sbjct: 249 SLIYRLKIEKKEILSLIDKATVIAPGKDSAITFHLSKKEITASISKQETGQSKVKSDKVI 308 Query: 315 -YNECPMDICFNYKYLLEII 333 Y+ + I N+KYL + I Sbjct: 309 KYSGEDVLINVNFKYLKDAI 328 >gi|254259653|ref|ZP_04950707.1| gp15 [Burkholderia pseudomallei 1710a] gi|254218342|gb|EET07726.1| gp15 [Burkholderia pseudomallei 1710a] Length = 196 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%) Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILR 210 +IRYYLNGI +E++ ++ +ATDGHR AV V + I+PR V Sbjct: 21 DIRYYLNGICIEAHEKETRV--IATDGHRAAVVRVSAENVDVTPRTRFIIPRATV----- 73 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMS-------------VRLIDGEFPNYQNVIPCSN 257 S+KVS + + + IE + S + ++G FP+Y+ VIP + Sbjct: 74 ------ESMKVSKAALKHPIAIEGPNDSGEYRATGGFGVAIFQAVEGVFPDYRRVIPETT 127 Query: 258 DKEL 261 +L Sbjct: 128 SGKL 131 >gi|323486044|ref|ZP_08091375.1| DNA polymerase III [Clostridium symbiosum WAL-14163] gi|323400611|gb|EGA92978.1| DNA polymerase III [Clostridium symbiosum WAL-14163] Length = 349 Score = 47.4 bits (111), Expect = 0.004, Method: Compositional matrix adjust. Identities = 62/312 (19%), Positives = 135/312 (43%), Gaps = 46/312 (14%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ++++++ L ++ +K T+P+ +L++ +G L A+ E+ I + + D Sbjct: 1 MKIQKTELAAKLNQIKGVVPKKTTMPILQGILVK--EGYL--IANNLEMTIKAKLEGTED 56 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS---------NFYLQSF 113 C I A +D++ L DG ++ IS G++ N Y Q+ Sbjct: 57 ECFIIPERA---FDLINNLPDGE-----------IDITISGGNTMTIKADKIKNKY-QTM 101 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP + E F + + +L V R +A+ + ++ + +D +L Sbjct: 102 DPGPFPVSDIEGEGSEFTIKAGLLLESVRRVSYAIPQQGGNATMSTMCLQ--AKDGQLNF 159 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V DGH LA ++D + +++P+ + ++ + + D +++ S + + Sbjct: 160 VGLDGHVLAWDKIDYDGEF----ELLIPKNTIDKLKTLGLTGD--IRIRRSNAMAVFATK 213 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT----NLRQAVDRVSIMSSVRIQAVKLS 289 + RL+ GE+ YQN+ KEL ++ L A+ R + ++ + VK Sbjct: 214 DFEICTRLVQGEYYKYQNMF-----KELPLHTVISRKELLDAMVRAKMCTAEKC-PVKFE 267 Query: 290 LSSDKLCMTVDN 301 LS +L +++ + Sbjct: 268 LSGSQLNLSIKD 279 >gi|302520517|ref|ZP_07272859.1| DNA polymerase III beta subunit domain-containing protein [Streptomyces sp. SPB78] gi|302429412|gb|EFL01228.1| DNA polymerase III beta subunit domain-containing protein [Streptomyces sp. SPB78] Length = 165 Score = 47.0 bits (110), Expect = 0.005, Method: Compositional matrix adjust. Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 13/164 (7%) Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 E I + RL++G+ P Y+ + P + + +AV RV++++ R Sbjct: 11 GEGLIGFEGAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RN 69 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 V+LS L + + D +A+E ++ + I FN +LL D +S+ +D Sbjct: 70 TPVRLSFEQGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---ID 123 Query: 344 DEVV-FRLDSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385 V +S + G+ D++ + K Y++MP+R+ Sbjct: 124 SPVAQLSFTTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 163 >gi|126207974|ref|YP_001053199.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae L20] gi|126096766|gb|ABN73594.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 136 Score = 47.0 bits (110), Expect = 0.006, Method: Compositional matrix adjust. Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 10/114 (8%) Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211 ++R LNG++F++ C AT+GH + ++ A K I+P + + +IL I Sbjct: 26 DVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPKRKGFIMPNELIKQILLI 81 Query: 212 LS----SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC--SNDK 259 K +++V+ ++ I + +++ + I+G+FPN V P SN+K Sbjct: 82 KPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLCAVYPLKESNNK 135 >gi|149199127|ref|ZP_01876166.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155] gi|149137724|gb|EDM26138.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155] Length = 465 Score = 46.6 bits (109), Expect = 0.006, Method: Compositional matrix adjust. Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 33/307 (10%) Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ----SFPE--SEFPSTK 122 +S L IV ++ G + E E +V S+G S YL ++PE SE ST+ Sbjct: 67 ISPETLKRIVAGMKRGDSVVLRYEEE-KLQVKFSNGMSLSYLTIDSVNYPETLSELKSTE 125 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + AS ++ N R + +T+ + LN IFF + E KL VATDG RL Sbjct: 126 GLD-------ASDLIVNY-RRAYNTASTDPAKDVLNSIFF--DSEAHKL--VATDGRRL- 172 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 ++I ++ ++P V ++ +I ++S +KV I + S + + Sbjct: 173 ---LNIKTELQVKQDTLIPLTKVLKVSKIFE-EESLIKVD--HKTIQIANSSWLYQCQQV 226 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 +G +PN++ V+P S + + ++ L D + + S + + L +KL V++ Sbjct: 227 EGGYPNWRTVVPESYESTIDLSGCELAFFCDTIRQLQSDKGEH-SLHWHDNKLIFAVNDE 285 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD---EVVDDEVVFRLDSSNSSVFI 359 +A + N+ P + +LL+ + D + D + SSN+ I Sbjct: 286 SGQRAASIVGAQSNDSPKSFAVDPNFLLDALIAAHGDVQIHLTDASSPICISSSNTQSVI 345 Query: 360 ---RGKD 363 RG D Sbjct: 346 MPKRGSD 352 >gi|238060457|ref|ZP_04605166.1| MerR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882268|gb|EEP71096.1| MerR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 362 Score = 46.2 bits (108), Expect = 0.009, Method: Compositional matrix adjust. Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 53/283 (18%) Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 +E V L+ + L ++ FA+ + L+G+ F + + ++L VATD HR+ Sbjct: 114 EENPMVTCLVLSRADLAAAIDAVRFAVGADPDLPVLSGVLFDVAADGVRL--VATDRHRM 171 Query: 182 AV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 AV VD AQ P +V R R L D SE+R+ L+ ++++ Sbjct: 172 AVSRVPGRVDGPAQRVLAPVDLVDRA------RALLDADGG-----SEARLRLDGAAVTV 220 Query: 238 SV--RLIDG-----EFPNYQNVIPCSNDK----ELRVNCTNLRQAVDRVSIMSSVRIQAV 286 SV R G EFP+YQ ++ + V+ LR V +R + V Sbjct: 221 SVAGREATGPALPHEFPDYQRLLGGHAGGTPAYRIPVDVPALRAEVADGPPARVLRHEGV 280 Query: 287 KLSLS----SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++ D + V + V + N +YLL+ +D + D Sbjct: 281 DVPVTVLGLDDVGALRVLDSAALADAAPEAVRFG-------VNGRYLLDALD--AGDR-- 329 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ LD + + +R + + +AF +LMP+R+ Sbjct: 330 -GQLLLELDGPIAPLAVR---------RPDDADAFSILMPIRL 362 >gi|273810561|ref|YP_003344942.1| gp7 [Sodalis phage SO-1] gi|258619846|gb|ACV84099.1| gp7 [Sodalis phage SO-1] Length = 172 Score = 46.2 bits (108), Expect = 0.010, Method: Compositional matrix adjust. Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 27/110 (24%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL----AV---AEVDIVAQIAKMPSIIVP 201 AT ++RYYLNG+FF +EE VATDGHRL AV E IVA ++P+ Sbjct: 19 ATNDVRYYLNGVFF--DEEGF---IVATDGHRLFCGSAVVPEGESKIVAIKGRLPTKFEY 73 Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 G SKD + ++ V ++DG FP+++ Sbjct: 74 CNIDGTSAAFFDSKDVLIG---------------TIPVEIVDGRFPDWRR 108 >gi|313887222|ref|ZP_07820917.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332299737|ref|YP_004441658.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM 20707] gi|312923313|gb|EFR34127.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332176800|gb|AEE12490.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM 20707] Length = 402 Score = 45.8 bits (107), Expect = 0.010, Method: Compositional matrix adjust. Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 39/325 (12%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58 MK TV +++ LL + R++ N ++P + L + + + + TG I P Sbjct: 1 MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE----------VNISHGDSNF 108 D ++ L D ++ L + E G ++I GD++ Sbjct: 61 LECDGEMRFLIAPTPLLDYIKSLPVQPLTMEMQTTEEGARFIHLIHSTGYLDIPIGDADL 120 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 Y+ E P E + S + SS L + A + R L+G+ F + + Sbjct: 121 YVSR----ESPEDTEGAAMMS--MNSSSLLAGISAVLPAAYPDTSREQLHGVHFVMLTDR 174 Query: 169 LKLCAVATDGHRLA---------VAEVDIVAQIA-KMPSIIVPRKA---VGEILRILSSK 215 L+LCA TD +L V + D VAQ + + PS +P K + IL +++ Sbjct: 175 LELCA--TDNVQLVRYIDYDARIVEKEDEVAQASLRDPSFTLPIKVSSFLQSILPNFANE 232 Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 ++ V + + + ++ V ++D FPNY ++P + + ++ L++A RV Sbjct: 233 EALVVFNNKQVEVRFGTYNVVSQVSVLD--FPNYNGLLPDAMTYMIEIDGQVLQRATTRV 290 Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVD 300 + +S++ V L S LC+T + Sbjct: 291 NYLSNI----VGLGADSSLLCITFE 311 >gi|111019151|ref|YP_702123.1| DNA polymerase III, beta chain [Rhodococcus jostii RHA1] gi|110818681|gb|ABG93965.1| probable DNA polymerase III, beta chain [Rhodococcus jostii RHA1] Length = 317 Score = 45.8 bits (107), Expect = 0.012, Method: Compositional matrix adjust. Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 38/232 (16%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 L G + + L+L V TD +RLAV ++ + + S +VP + + +L D Sbjct: 115 LRGCLLETDHDVLRL--VTTDRYRLAVGTATLLEPLDEPISAVVPCTFLDDAAGLLRRHD 172 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR----QAV 272 + V V + I L + RL+DG FP+++++ P E + +LR A Sbjct: 173 T-VTVVVGADSITLRCGGEQLGTRLVDGAFPDHRSLSPLDRGIEYTFSSADLRALLADAG 231 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 DRV + L S ++ +G+ V + + N +LLE Sbjct: 232 DRVDLG----------VLESGEIV-------VGRQGTEQPVLFQ-----VQVNAGFLLEA 269 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +D + +++ F++ + + IR + + + +A+ +LMP++ Sbjct: 270 VDALPG-----EQLTFQVGEPITPLAIRPR----SIHTSDPASAYSLLMPLQ 312 >gi|20799549|gb|AAM28542.1|AF494512_1 DNA polymerase III beta subunit [Tomato big bud phytoplasma] Length = 273 Score = 45.1 bits (105), Expect = 0.018, Method: Compositional matrix adjust. Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 8/170 (4%) Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 LQ FP F ++ F + + +LK +++ + A + ++ + L G+ F I E L Sbjct: 77 LQLFPPVSFDFQSDK----FFAIKNEILKKIIKEVNVAASRDKQQKTLMGVNF-IYENSL 131 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRI 228 L +ATD R+A E+ + +I V K + E+ ++L KD V +S+++ ++ Sbjct: 132 -LRVLATDTFRIAQKEISLDXNYFDF-NITVSYKNLEELYKLLEYQKDELVHISINQQKM 189 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 L ++L L++G++P + + S +++N + + ++RVS++ Sbjct: 190 ILRCDNLLFQTTLLEGKYPAWPIIKVSSFPFFVKMNRLDCLKTLERVSLV 239 >gi|330937295|gb|EGH41306.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 84 Score = 45.1 bits (105), Expect = 0.019, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 14/98 (14%) Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + L+S +L + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V Sbjct: 1 MQLASGQLKIQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVR 55 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L SNSS ++ D D ++ YV+MPMR+ Sbjct: 56 LILSDSNSSALVQESDND---------DSAYVVMPMRL 84 >gi|58699454|ref|ZP_00374195.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia endosymbiont of Drosophila ananassae] gi|58534026|gb|EAL58284.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia endosymbiont of Drosophila ananassae] Length = 77 Score = 45.1 bits (105), Expect = 0.021, Method: Compositional matrix adjust. Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 15/78 (19%) Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 A ES+ V YNE P++I FN +YLL+++ + ++ F L NS+ I +D S Sbjct: 14 ATESIEVDYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIITDEDDSS 67 Query: 367 KNNKDNKVNAFYVLMPMR 384 YV+MPMR Sbjct: 68 ---------VLYVVMPMR 76 >gi|270307680|ref|YP_003329738.1| DNA polymerase III domain protein [Dehalococcoides sp. VS] gi|270153572|gb|ACZ61410.1| DNA polymerase III domain protein [Dehalococcoides sp. VS] Length = 413 Score = 44.3 bits (103), Expect = 0.030, Method: Compositional matrix adjust. Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 15/160 (9%) Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210 E+ + L + F + +D KL V+ DG RL++ ++D + +++ R + ++ Sbjct: 135 EDSKPILQCVLFRV--KDGKLTMVSADGFRLSLVKLDFDGDEGE---VLISRDDLWGVVS 189 Query: 211 ILSSKDSSVKVSLSES-------RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 L + V+VS +S + L+ E++ R DG FP Y+ +IP + Sbjct: 190 ALR-RAYRVRVSFEKSGESLDGMSLVLDTEAIRYKWRGADGNFPEYEKLIPADFTTFVSF 248 Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 + +AV + ++S + + L++ + KL M+ +PD Sbjct: 249 DTNEAIKAVSSLKVLSDSKNYPIDLTIGNGKLTMS--SPD 286 >gi|121610651|ref|YP_998458.1| DNA polymerase sliding clamp subunit-like protein [Verminephrobacter eiseniae EF01-2] gi|121555291|gb|ABM59440.1| DNA polymerase sliding clamp subunit-like protein [Verminephrobacter eiseniae EF01-2] Length = 366 Score = 44.3 bits (103), Expect = 0.031, Method: Compositional matrix adjust. Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 26/205 (12%) Query: 54 TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH-GDSNFYLQS 112 GAI SV C T+ A ++ GAQ+ F G + + +N + Sbjct: 66 AGAILGSVLDCTECTIEA---------IEQGAQLVFG-----GARIKLMRPAGANDGIDL 111 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F + P+ ++ V FE + L+ A ++RYYL G+ + L+L Sbjct: 112 F---DAPADGDKRVV--FETSGRDFAGLMAGPVQYAAKSDVRYYLVGVHATCDAGALRL- 165 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES---RIH 229 ++G L A I A A M IVP A I + + + L + R+ Sbjct: 166 -TGSNGFMLCTAAGAIDAS-ASMVDCIVPHTAADSIGAVFGADERITVCQLGKDANLRLL 223 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIP 254 ++ E++ + L+ G+FP+++ V+P Sbjct: 224 MHSETIQWNTALVAGKFPDFRRVMP 248 >gi|34762965|ref|ZP_00143943.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887353|gb|EAA24445.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 319 Score = 44.3 bits (103), Expect = 0.035, Method: Compositional matrix adjust. Identities = 54/253 (21%), Positives = 116/253 (45%), Gaps = 30/253 (11%) Query: 145 HFAMATEEIRYYLNG------IFFHINE--EDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 F M+ E++++ N +F I +D L V+TD RL + ++ I K Sbjct: 83 KFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNILELVSTDSFRLIYMKKELNNTINK-- 140 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 I+VP ++ I +IL D ++ S+ ++ + + + +L+ FP+++ +I + Sbjct: 141 DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVTWKDAYFTCKLLSLNFPDFRPLINNT 200 Query: 257 N-DKELRVNCTNLRQAVDRV---SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312 N DK N L A+ +V + S+ + ++L ++ + + K + +N Sbjct: 201 NHDKRFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQLVISGVSSN-AKINQKVN 259 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 + + + N KY+ E IDN+ + ++ +++NSS +R ++ ++ Sbjct: 260 MIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------EATNSSSMLRFMEERNE----- 306 Query: 373 KVNAFYVLMPMRI 385 N Y++MP+ I Sbjct: 307 --NYIYLIMPVNI 317 >gi|134034789|gb|ABO45716.1| DNA polymerase III beta subunit [Microcystis sp. N-C 118/2] Length = 111 Score = 44.3 bits (103), Expect = 0.036, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 275 VSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 V+++S + VK SL S D+L + V++PD+G A ESM DI FN KYL++ Sbjct: 11 VAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAATIQGESGDIAFNVKYLMDG 70 Query: 333 IDNISSDEV 341 + + ++++ Sbjct: 71 LKALPNNDI 79 >gi|262067571|ref|ZP_06027183.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291378686|gb|EFE86204.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 364 Score = 43.9 bits (102), Expect = 0.044, Method: Compositional matrix adjust. Identities = 68/395 (17%), Positives = 168/395 (42%), Gaps = 43/395 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +++ ++ I++ P + ++ + + K + E+E+ + Sbjct: 1 MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-----SNFYLQSFPE 115 ++V G + + LL + ++ ++ EN +N+ D +N E Sbjct: 61 IEVEGQVLIKPSLLLEYIKLIES--------EN-----INLEKKDGYLIVNNAEFSILDE 107 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAV 174 + +P KE + + L+E+ F ++ + N I + ++L + Sbjct: 108 TTYPEIKEVPSTTIAKENGIQVAMLLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIELAS- 166 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RL + + + K I+VP ++ I +IL + V ++ E ++ + + Sbjct: 167 -TDSYRLIYFKKQLENMVNK--DILVPGDSISVIYKILKDLNEDVSLATCEDKLIITWKD 223 Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRV---SIMSSVRIQAVKLSL 290 S +L+ FP+++ +I S +DK+ N L ++ +V + S+ + Sbjct: 224 AYFSCKLLSLTFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNF 283 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++L + + + K + +N+ + + N KY+ E +DN + ++ Sbjct: 284 KGNQLLINGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDNTDKNIII-------- 334 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++NSS ++ ++ ++ N Y++MP+ I Sbjct: 335 EATNSSSMLKIVEETNE-------NYIYLVMPVNI 362 >gi|134034795|gb|ABO45720.1| DNA polymerase III beta subunit [Microcystis botrys N-C 161/1] gi|134034805|gb|ABO45727.1| DNA polymerase III beta subunit [Microcystis botrys N-C 264] Length = 111 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 275 VSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 V+++S + VK SL S D+L + V++PD+G A ESM DI FN KYL++ Sbjct: 11 VAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDG 70 Query: 333 IDNISSDEV 341 + + ++++ Sbjct: 71 LKALPNNDI 79 >gi|34764154|ref|ZP_00145022.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886072|gb|EAA23380.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 307 Score = 43.9 bits (102), Expect = 0.045, Method: Compositional matrix adjust. Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 50/304 (16%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R + L + + ++ P+ + + + +I +G ++ T I S Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56 Query: 61 VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107 +DV G I S ++ + +++++D I F + + TE ++ + Sbjct: 57 IDVNEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSAE-- 114 Query: 108 FYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRYYL 157 ++P+T E E + FE+ S L N+ E+ F+ T + IR + Sbjct: 115 ---------DYPNTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNIAMNCIR--I 163 Query: 158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS 217 I H L ++T+ +RL + +I I S+ VP + I++I+ D+ Sbjct: 164 ESILKH-------LHFISTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDN 215 Query: 218 SV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRV 275 V KV E+ ++ + + +LI+ FPNY ++ S DK+L +N L + R+ Sbjct: 216 EVIKVYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRI 275 Query: 276 SIMS 279 I S Sbjct: 276 LIFS 279 >gi|134034783|gb|ABO45712.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 31] gi|134034786|gb|ABO45714.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 57] gi|134034792|gb|ABO45718.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 143] gi|134034798|gb|ABO45722.1| DNA polymerase III beta subunit [Microcystis viridis N-C 169/7] gi|134034801|gb|ABO45724.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 228/1] gi|134034808|gb|ABO45729.1| DNA polymerase III beta subunit [Microcystis sp. N-C 324/1] gi|134034892|gb|ABO45776.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 123/1] gi|134034895|gb|ABO45778.1| DNA polymerase III beta subunit [Microcystis cf. flos-aquae N-C 144] gi|134034898|gb|ABO45780.1| DNA polymerase III beta subunit [Microcystis cf. ichthyoblabe N-C 279] Length = 111 Score = 43.9 bits (102), Expect = 0.046, Method: Compositional matrix adjust. Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%) Query: 275 VSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 V+++S + VK SL S D+L + V++PD+G A ESM DI FN KYL++ Sbjct: 11 VAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDG 70 Query: 333 IDNISSDEV 341 + + ++++ Sbjct: 71 LKALPNNDI 79 >gi|330861744|emb|CBX71918.1| hypothetical protein YEW_AJ01850 [Yersinia enterocolitica W22703] Length = 82 Score = 43.5 bits (101), Expect = 0.050, Method: Compositional matrix adjust. Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 14/96 (14%) Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V Sbjct: 1 MSQNQLKITANNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLL 55 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L S SSV I +D S+ A YV+MPMR+ Sbjct: 56 LTDSVSSVQI--EDGASQ-------AAAYVVMPMRL 82 >gi|89512206|gb|ABD73999.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. paratuberculosis] Length = 143 Score = 42.7 bits (99), Expect = 0.085, Method: Compositional matrix adjust. Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +K + R + + + + + +PV VLL D L I E+ + A Sbjct: 6 LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ VS LL DIVR L + I F+ + G V ++ G + F L + ++P+ Sbjct: 66 IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 121 >gi|302869183|ref|YP_003837820.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC 27029] gi|302572042|gb|ADL48244.1| DNA polymerase III beta chain [Micromonospora aurantiaca ATCC 27029] Length = 378 Score = 42.7 bits (99), Expect = 0.095, Method: Compositional matrix adjust. Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 49/274 (17%) Query: 140 LVERTHFAMATEEIRY---------YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 ++ RT A A + +R+ L+G+ + + ++L VATD HRLAVA V Sbjct: 126 VLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRLAVARVG--G 181 Query: 191 QIAKMP-SIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + P S ++P AV E LR L D + +V ++ R+ + + ++ + +FP Sbjct: 182 TVDGPPVSALLPVAAVDE-LRALLDLDGADTAEVVVATDRVTVTVAGRPLTAVPLPYDFP 240 Query: 248 NYQNVIPCS----NDKELRVNCTNLRQAV--DRVSI----MSSVRIQAVKLSLSSDKLCM 297 +Y+ ++ + + LR A+ D V + V + V L L Sbjct: 241 DYRRLLRAQLGDVPTYRIPFDGAALRAALTADGVPVCHRAHEGVEHEVVALGLDGRGELR 300 Query: 298 TVDNPDMGKAIESMNVYYNEC------PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 VD P+ A + + + N +YLL D + S D ++V LD Sbjct: 301 LVD-PNGVVAAGGVEGGAGAAGAGGPDALRVAVNREYLL---DALGSG---DGQLVLELD 353 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +R + + +AF VLMP+R+ Sbjct: 354 GPIAPLAVR---------RADDAHAFSVLMPVRL 378 >gi|294632544|ref|ZP_06711104.1| DNA polymerase subunit III beta [Streptomyces sp. e14] gi|292835877|gb|EFF94226.1| DNA polymerase subunit III beta [Streptomyces sp. e14] Length = 281 Score = 42.4 bits (98), Expect = 0.13, Method: Compositional matrix adjust. Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 3/135 (2%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 FA T+ L G+ I ++ L++ VATD +R+A+A +I P + Sbjct: 63 FAAGTDPELPMLGGVLLDIEDDALRV--VATDRYRMAIARTRTTTHDGPHTQVIAP-LPL 119 Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 + +R L + + ++++ + L + R +D +FP+ + ++ + R++ Sbjct: 120 TDAIRALLDGEETAQLAVEGDLLTLGTGDRRTTGRCLDHDFPDCRRLLDLPTGRRARIDT 179 Query: 266 TNLRQAVDRVSIMSS 280 R A++ + +S Sbjct: 180 AVFRTALETGPVHAS 194 >gi|134096941|ref|YP_001102602.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] gi|291006617|ref|ZP_06564590.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] gi|133909564|emb|CAL99676.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 364 Score = 42.0 bits (97), Expect = 0.15, Method: Compositional matrix adjust. Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 15/223 (6%) Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 H+ + +L TD R+AVA + + ++VP + E+ + S + V + Sbjct: 157 HVKQRGERLVLAGTDRFRMAVATLPWRPGTDDL-DVLVPSGLLTEVAKQASGDE--VMLR 213 Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 R+ L+ +S L+D FP+ + D + V + AV RVS + Sbjct: 214 ADADRVGLSWADAEVSTTLLDAPFPDESRHLLPEVDCAVEVRADEVAGAVRRVSPYAGAH 273 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 AV L + ++ + +P G A E++ F +YL + + + V Sbjct: 274 -GAVVLDVGDAEVRVRAADPQFGDAQEAVKATVTGDRFSPAFQPRYLADALQAFAGRTV- 331 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + R S+V D D+ + + YVLMP RI Sbjct: 332 --RMGLRSGLRRSTVI---SDVDAP-----EADLRYVLMPKRI 364 >gi|196230263|ref|ZP_03129126.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428] gi|196225860|gb|EDY20367.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428] Length = 97 Score = 41.6 bits (96), Expect = 0.20, Method: Compositional matrix adjust. Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%) Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 +SS + +VKL + + + + + PD+G+A ES+ V Y I FN ++L + ++ Sbjct: 5 LSSEKSNSVKLVFTKNNIEIAANTPDVGEARESLAVAYKGREFSIAFNPEFLQAPLRVLT 64 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DEV D + D+ S + YVLMPMRI Sbjct: 65 NDEVYLDMI----------------DEMSPGVIKIQSPFLYVLMPMRI 96 >gi|321309520|ref|YP_004191849.1| DNA polymerase III subunit beta [Mycoplasma haemofelis str. Langford 1] gi|319801364|emb|CBY92010.1| DNA polymerase III beta subunit [Mycoplasma haemofelis str. Langford 1] Length = 376 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 1/109 (0%) Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 L M V++ G FP + +N+KE V+ ++L A++R ++S+ IQ L ++K Sbjct: 237 LIMKVKIERGNFPELSHWFNTNNNKEFLVSKSDLLSAIERNLLLSNKVIQTTFYRLENEK 296 Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 L + + + G E + + + + +D N L +I NI S+ ++ Sbjct: 297 LWIEYKDSEKGFCKEFIKIKKFTDGDIDFSLNNNLLKPLIKNIDSENII 345 >gi|62362365|ref|YP_224230.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC] gi|58219987|gb|AAW67499.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC] Length = 191 Score = 41.6 bits (96), Expect = 0.21, Method: Compositional matrix adjust. Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 15/124 (12%) Query: 134 SSVLKNLVERTHFAMAT---EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 + V+ NLV+ A ++R+Y NG+ ++N+ ++ VATDG+ +AV I + Sbjct: 7 NKVINNLVQAVKAAKVFAAKNDVRFYFNGVALYVNDGVIE-SVVATDGYSMAV----IGS 61 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 + I+ K + + L++ D VKV+ IE + L+DG +PN + Sbjct: 62 TELNGEASIIANKDIDTLCNALATSDQ-VKVNWPV------IEIGDYKIPLVDGRYPNVK 114 Query: 251 NVIP 254 VIP Sbjct: 115 RVIP 118 >gi|416236|dbj|BAA03628.1| DNA polymerase III beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 165 Score = 41.2 bits (95), Expect = 0.26, Method: Compositional matrix adjust. Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 3/127 (2%) Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 ++K+ + E I I+++ LIDG+FPN Q P + + V ++ + + R + Sbjct: 7 NLKIIIVEGYITFIIDNVIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDL 66 Query: 278 MSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIID 334 ++ + A V + ++ DK+ ++GK E + + E + I FN ++L++ I Sbjct: 67 VADDGLPAIVNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIK 126 Query: 335 NISSDEV 341 +S D + Sbjct: 127 TLSEDRI 133 >gi|213581832|ref|ZP_03363658.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 79 Score = 41.2 bits (95), Expect = 0.27, Method: Compositional matrix adjust. Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 14/93 (15%) Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++L +T +NP+ +A E ++V Y M+I FN Y+L++++ + + V R+ Sbjct: 1 NQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETV-------RIML 53 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++S ++ +D S+ +A YV+MPMR+ Sbjct: 54 TDSVSSVQIEDAASQ-------SAAYVVMPMRL 79 >gi|320580634|gb|EFW94856.1| Ubiquitin-protein ligase (E3) [Pichia angusta DL-1] Length = 1559 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 26/157 (16%) Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEE----DLKLCAVATDGHRLAVAEVDIVA 190 SVL V R+ + + I + N +FF I +E K + RL+ + D+ Sbjct: 1268 SVLGKFVARS--LLDSRIIDFEFNPLFFEIAKELDTKSWKELSRKKSIERLSRVDADLA- 1324 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 K++G + R L D+ +V SE R + IE +S ++ P Y+ Sbjct: 1325 ------------KSLGHLTRYL---DAYAEVEESE-RPEILIEGCKLSDLSLNFTLPGYE 1368 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRV---SIMSSVRIQ 284 +V C N +E+ V+ TNL + VD+V +I S VR Q Sbjct: 1369 DVELCLNGEEVEVDHTNLERYVDKVIDLTIKSGVRSQ 1405 >gi|315504340|ref|YP_004083227.1| DNA polymerase iii beta chain [Micromonospora sp. L5] gi|315410959|gb|ADU09076.1| DNA polymerase III beta chain [Micromonospora sp. L5] Length = 384 Score = 41.2 bits (95), Expect = 0.30, Method: Compositional matrix adjust. Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 17/126 (13%) Query: 140 LVERTHFAMATEEIRY---------YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 ++ RT A A + +R+ L+G+ + + ++L VATD HRLAVA V Sbjct: 126 VLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRLAVARVG--G 181 Query: 191 QIAKMP-SIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + P S ++P AV E LR L D S +V ++ R+ + + ++ + +FP Sbjct: 182 TVDGPPVSALLPVVAVDE-LRALLDLDGADSAEVVVATDRVTVTVAGRPLTAVPLPYDFP 240 Query: 248 NYQNVI 253 +Y+ ++ Sbjct: 241 DYRRLL 246 >gi|307069625|ref|YP_003878102.1| DNA polymerase III subunit beta [Candidatus Zinderia insecticola CARI] gi|306482885|gb|ADM89756.1| DNA polymerase III, beta subunit [Candidatus Zinderia insecticola CARI] Length = 366 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 19/232 (8%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 +Y LNG+ IN E K+ ++TDG RL+ ++I II+P+K + EI++IL+ Sbjct: 154 KYSLNGLL--INIEKKKISFLSTDGFRLSYYFLNIKNNYK--TKIIIPKKNIFEIIKILN 209 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + +K+ + ++ I I + RLI +F NY+ +I ++++N + + Sbjct: 210 YEKKKIKIIILKNYIIFKIFKIKFISRLIKEDFINYKYIINKKYRYKIKINRKKILNIIK 269 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 ++S++ +I+ +K ++ + L ++ N + E +N+ Y ++I N KYLLEI+ Sbjct: 270 KISLIEKDKIKIIKFNIKRNNLKISSFNKIEEISNEKININYKNKNININLNIKYLLEIL 329 Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NI + ++F+ + S+ I+ NK N Y++MP+ I Sbjct: 330 TNIK-----NKHIIFKFNKK-KSILIKI---------YNKKNFKYIIMPIEI 366 >gi|228471322|ref|ZP_04056125.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3] gi|228306899|gb|EEK16007.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3] Length = 402 Score = 40.4 bits (93), Expect = 0.47, Method: Compositional matrix adjust. Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 45/328 (13%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58 MK TV +++ LL + R++ N ++P + L + + + + TG I P Sbjct: 1 MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE----------VNISHGDSNF 108 D ++ L D ++ L + E G ++I GD+ Sbjct: 61 LECDGDMHFLIAPTPLLDYIKSLPVQPLTLEMQTTEEGARFIHLIHSTGYLDIPIGDAEL 120 Query: 109 YL--QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 Y+ +S +SE + S+VL A + R L+G+ F + Sbjct: 121 YVSRESPEDSEGAAMMSMNSSSLLSGISAVLP--------AAYPDTSREQLHGVHFVMLS 172 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKM-----------PSIIVPRKA---VGEILRIL 212 + L+LCA TD +L V +D A+I + PS +P K + IL Sbjct: 173 DRLELCA--TDNVQL-VRYIDYDARIVEKEGEVAQASLRDPSFTLPIKVSSFLQSILPNF 229 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 +++++ V + + + ++ V ++D FPNY ++P + + ++ L++A Sbjct: 230 ANEEALVIFNNKQVEVRFGTYNVVSQVSVLD--FPNYNGLLPDAMTYMIEIDGQVLQRAT 287 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 RV+ +S++ V L S LC+T + Sbjct: 288 TRVNYLSNI----VGLGADSSLLCITFE 311 >gi|300790639|ref|YP_003770930.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] gi|299800153|gb|ADJ50528.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] Length = 353 Score = 40.4 bits (93), Expect = 0.51, Method: Compositional matrix adjust. Identities = 71/360 (19%), Positives = 143/360 (39%), Gaps = 33/360 (9%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 +P + L+A L + ++ + PA+ GS+ V A L + + K+ D Sbjct: 21 LPARAGLRLEAAAAGLTVAGVASDLAVRFGCPATTHTDGSVVVPAAPLVETL-KVLDTEL 79 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPESEF---PSTKEEEYVYSFELASSVLKNLVER 143 + E G+ + + ++ F L PES P K E V AS++ +V Sbjct: 80 VRLVVE---GSRLALRLDNARFALPLLPESGAVSDPPAKVSE-VDGAAFASAL--RIVAG 133 Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 T A ++ G+ L L A+D +R+AVA + + + + ++VP Sbjct: 134 TA---AKDDPLPLFTGVRVQAAGAGLTLT--ASDRYRMAVARLPLSSPGSL--DVLVPAA 186 Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 + E R + V + + R ++ ++ ++D F + ++ + D + + Sbjct: 187 LLSEAARQARGR---VGLHVGPGRFGVSWPEGLVATAVLDAGFLSEDSIPSGTVDTTVSL 243 Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDIC 323 L AV RV + + R + + L + ++ + D G+A E++ + Sbjct: 244 PADALAAAVRRVGVYAEDR-RVLTLEVGDAQVRLASARQDTGEAEETLKADVSGGRTSPS 302 Query: 324 FNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 F +YLL+ + + ++VV + + +R + +V Y LMPM Sbjct: 303 FQARYLLDALAAFAG-----EQVVLSIQPGMRACILRAAEP-------GEVALAYYLMPM 350 >gi|302530874|ref|ZP_07283216.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4] gi|302439769|gb|EFL11585.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4] Length = 365 Score = 40.0 bits (92), Expect = 0.60, Method: Compositional matrix adjust. Identities = 67/349 (19%), Positives = 134/349 (38%), Gaps = 23/349 (6%) Query: 35 LQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 L+AN L + + ++ + + PA+ + G + V A + VR L D Q+ E Sbjct: 37 LRANADGLVVSGNDRDLAVQLSCPATTHLDGEVVVPAAPFAETVRML-DVDQVRLVVE-- 93 Query: 95 LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 GT + I + F L + + L+ + A ++ Sbjct: 94 -GTRLAIRTDSARFALPLLDRDLLHDPSPPPLLSKVD--GLALEAALRTVAGTAAKDDPL 150 Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 G+ + +LC A D +R+AVA + + ++ ++VP + E R Sbjct: 151 PVFTGV--RVQSIGGELCLTACDRYRMAVARLPL-REVRDPIDVLVPATLLTEAAR---H 204 Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 ++ + + L+ +++ ++D F + ++ + D E+ V+ L A+ R Sbjct: 205 GSGAMGLHADDRHFALSWPGGTVTTAVLDAGFLSADSIPSNAIDTEVEVSADELAAAIRR 264 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 V + S R + + L + L + D G+A E + F+ +YLL+ + Sbjct: 265 VGVYSEDR-RVLTLEVGDAHLRLASARQDTGEAEEHLKANVCGGRTSPSFHARYLLDALA 323 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S + V + + + D+D + +V Y LMPM Sbjct: 324 PFSG-----ERVRLAIQPGLRACVLTPADEDGR-----EVALMYYLMPM 362 >gi|209554064|ref|YP_002284498.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541565|gb|ACI59794.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 379 Score = 38.9 bits (89), Expect = 1.3, Method: Compositional matrix adjust. Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106 + G I V+A +L ++ KL+D + I K T++N + +S Sbjct: 61 FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 NF L+ + + P +E + + VL N++ + E+I+ ++G+ Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225 D +L A+ TD + + + + K K + E+LR + S + V + Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 + + + R+IDG +PN ++ +N+++ Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264 >gi|296128245|ref|YP_003635495.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM 20109] gi|296020060|gb|ADG73296.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM 20109] Length = 327 Score = 38.9 bits (89), Expect = 1.5, Method: Compositional matrix adjust. Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 15/147 (10%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 L G+ H++ L+L V D RLAVA V + ++ P + ++ D Sbjct: 141 LAGVLMHLDATSLRL--VGCDRSRLAVATVPVRRPSGAEVRVVAPLAFLDDLASAELPAD 198 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 V + SR +E L +D +P+YQ ++ + + V +L +AVD Sbjct: 199 GPVVLG---SR---TLEVLGRHGEPLDAAYPDYQQLLRSGGSRHVTVATVDLVEAVDGAD 252 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPD 303 + VR L D++ + PD Sbjct: 253 EIVVVR-------LDGDRVALGAPGPD 272 >gi|167974938|ref|ZP_02557215.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975179|ref|ZP_02557456.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167989088|ref|ZP_02570759.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168362255|ref|ZP_02695434.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867361|ref|ZP_03079365.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273299|ref|ZP_03205835.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551555|ref|ZP_03772501.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903556|gb|EDT49845.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018688|gb|EDU56728.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997710|gb|EDU66807.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660141|gb|EDX53521.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660837|gb|EDX54090.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249819|gb|EDY74599.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379370|gb|EEH01735.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 379 Score = 38.5 bits (88), Expect = 1.6, Method: Compositional matrix adjust. Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106 + G I V+A +L ++ KL+D + I K T++N + +S Sbjct: 61 FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 NF L+ + + P +E + + VL N++ + E+I+ ++G+ Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225 D +L A+ TD + + + + K K + E+LR + S + V + Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 + + + R+IDG +PN ++ +N+++ Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264 >gi|323490679|ref|ZP_08095881.1| sucrose-6-phosphate hydrolase-like protein [Planococcus donghaensis MPA1U2] gi|323395561|gb|EGA88405.1| sucrose-6-phosphate hydrolase-like protein [Planococcus donghaensis MPA1U2] Length = 489 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 11/109 (10%) Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R + E ++ A +I+ R A GE + I + ++ + + HL ++S S+ + Sbjct: 390 RASGEEKTVIQYDATQEKVILDRTASGEEVAIAYGTERKYQLDGEKIKFHLFVDSSSVEI 449 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + DGE + P + KE+R TN SV +AVK Sbjct: 450 FVNDGEAVFTSRIFPSAESKEIRFFATN-----------GSVNFKAVKW 487 >gi|213692129|ref|YP_002322715.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523590|gb|ACJ52337.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458246|dbj|BAJ68867.1| hypothetical protein BLIJ_1280 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 357 Score = 38.5 bits (88), Expect = 2.0, Method: Compositional matrix adjust. Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 19/125 (15%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 +++ V+ + ++ HA R++ER N +V L A D L I A+G G + A+ Sbjct: 2 VRVLVDAREFANMVAHAARVLERDNP-----YVALDAADDGLAISAAGDSQWSHGRVDAT 56 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN-----ISHGDSNFYLQSFPE 115 V GS VS L + + G E+G E N + G+++ ++ E Sbjct: 57 VLEAGSAVVSGLWLNALANAMPSG---------EIGVETNGGYLTLRGGEASLRMRVGEE 107 Query: 116 SEFPS 120 + P+ Sbjct: 108 KDRPA 112 >gi|167972399|ref|ZP_02554676.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209326|gb|EDU06369.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 379 Score = 38.1 bits (87), Expect = 2.2, Method: Compositional matrix adjust. Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106 + G I V+A +L ++ KL+D + I K T++N + +S Sbjct: 61 FEHFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 NF L+ + + P +E + + VL N++ + E+I+ ++G+ Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225 D +L A+ TD + + + + K K + E+LR + S + V + Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 + + + R+IDG +PN ++ +N+++ Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264 >gi|330469507|ref|YP_004407250.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] gi|328812478|gb|AEB46650.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] Length = 396 Score = 38.1 bits (87), Expect = 2.3, Method: Compositional matrix adjust. Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 15/124 (12%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 FA+ T+ L G+ F + + L+L VATD HRLAVA + + ++P V Sbjct: 135 FAVGTDPTVPALTGVLFDVTDSGLEL--VATDRHRLAVATAEATVHGPAV-RTLLPLDTV 191 Query: 206 GEILRILSSKD------------SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 + +L + + V++++S S + ++ + + +FP+Y ++ Sbjct: 192 DALRHLLDASAGAGAGAGAGADRAVVELTVSGSSLVADVAGHELRATALPYDFPDYHALL 251 Query: 254 PCSN 257 P S Sbjct: 252 PRSG 255 >gi|326803684|ref|YP_004321502.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a] gi|326650281|gb|AEA00464.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a] Length = 774 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%) Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215 Y+ GI E++ C V +DG E+ ++A+IA+ PS+ P + G +++ + K Sbjct: 156 YIGGIRIQNKGEEMMTCFVLSDGLHPVEGEI-VIAEIAEYPSLDQPLQMTGRVIQTIGHK 214 Query: 216 DS 217 D+ Sbjct: 215 DA 216 >gi|301633590|gb|ADK87144.1| DNA polymerase III, beta subunit [Mycoplasma pneumoniae FH] Length = 380 Score = 37.7 bits (86), Expect = 2.8, Method: Compositional matrix adjust. Identities = 60/360 (16%), Positives = 160/360 (44%), Gaps = 28/360 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ + ++++ ++L +I N + P ++L++A + + A+ + Sbjct: 1 MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60 Query: 60 SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENEL-----GTEVNISHGDSNFYLQS 112 ++DV G + V + +++ +++ I K+ L T +N++ D + Sbjct: 61 NIDVLEEGEVIVKGKIFSELINGIKEDIIIIQEKDQTLLVKTKKTNINLNTIDK----KE 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT--EEIRYYLNGIFFHINEEDLK 170 FP F + + ++ S+L +++ A++T E R + NG+ F+ + Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKF-NGVNFN-GSNGKQ 174 Query: 171 LCAVATDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 + A+D ++L+V E+ + + + + I G+++ I K+ +S Sbjct: 175 IFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLS- 233 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVR 282 + + + +++ ++ I+ FP + + ++ + L+ A+ R+ ++ + R Sbjct: 234 --TELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNER 291 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +++ L + + ++G ++E + + + ++I N LLE ID+ +DE+ Sbjct: 292 FFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEI 351 >gi|149197397|ref|ZP_01874448.1| serine/threonine-protein kinase [Lentisphaera araneosa HTCC2155] gi|149139415|gb|EDM27817.1| serine/threonine-protein kinase [Lentisphaera araneosa HTCC2155] Length = 655 Score = 37.7 bits (86), Expect = 3.1, Method: Compositional matrix adjust. Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 10/65 (15%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP-EIEITGAIPAS 60 K+T ER+DI L G ++ RK P ND E +AS P E+ T AIPAS Sbjct: 229 KLTDERTDIYSLGGILYSLLSRKTPFP--------RNDINFERRASAPSEVSSTNAIPAS 280 Query: 61 VD-VC 64 +D VC Sbjct: 281 LDAVC 285 >gi|160898840|ref|YP_001564422.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1] gi|160364424|gb|ABX36037.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1] Length = 174 Score = 37.7 bits (86), Expect = 3.3, Method: Compositional matrix adjust. Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 20/115 (17%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 A A +++RYYL G+ IN+ + VATDG RL A A+ P II + Sbjct: 13 LAAAKKDLRYYLKGVL--INDRHI----VATDGSRLHAARHG--AEWLHGPRII----PI 60 Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 +L L K +++L + +DG FP Y+ V+P + E Sbjct: 61 DNLLLALKKKSDLTEITLCSVG--------DVIYAPVDGVFPAYERVLPRGTEPE 107 >gi|291333915|gb|ADD93595.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 84 Score = 37.4 bits (85), Expect = 3.5, Method: Compositional matrix adjust. Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 14/98 (14%) Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +SL+ D L + +NP+ A E + V Y+ ++I FN YL E + I + E+V Sbjct: 1 MSLNKDLLKIEANNPEKESAEEEIKVDYSGPELEIGFNISYLQESLTTIKD---LSAEIV 57 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F SS ++ NK+N+ + +V+MPMR+ Sbjct: 58 FF--GQESSCIVK--------NKENE-DLIHVIMPMRL 84 >gi|313667162|gb|ADR73024.1| carboxylesterase [Laodelphax striatellus] gi|313667164|gb|ADR73025.1| carboxylesterase [Laodelphax striatellus] Length = 621 Score = 37.4 bits (85), Expect = 3.6, Method: Compositional matrix adjust. Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 20/98 (20%) Query: 53 ITGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENEL-----GTEVN----- 100 T IP +D+CG + A LL I +LQ SF + L G EVN Sbjct: 443 FTAMIPGLIDICGVTLLKACLLQQIRHNWQLQPSYLYSFNYKGHLTKFGYGEEVNYPFGG 502 Query: 101 -ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137 ++H D YL FP TK E Y + E+A +V+ Sbjct: 503 GVAHSDDLLYL-------FPHTKGELYPHEVEVAKTVV 533 >gi|330949283|gb|EGH49543.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 43 Score = 37.4 bits (85), Expect = 3.7, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V Sbjct: 1 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTV 43 >gi|225550400|ref|ZP_03771349.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379554|gb|EEH01916.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 379 Score = 37.4 bits (85), Expect = 3.7, Method: Compositional matrix adjust. Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKISTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VDV--CGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106 + G I V+A +L ++ KL+D + I K T++N + +S Sbjct: 61 FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120 Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166 NF L+ + + P +E + + VL N++ + E+I+ ++G+ Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225 D +L A+ TD + + + + K K + E+LR + S + V + Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 + + + R+IDG +PN ++ +N+++ Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264 >gi|213052919|ref|ZP_03345797.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 72 Score = 37.4 bits (85), Expect = 4.4, Method: Compositional matrix adjust. Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%) Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V R+ ++S + Sbjct: 1 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETV-------RIMLTDSVSSV 53 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D S+ +A YV+MPMR+ Sbjct: 54 QIEDAASQ-------SAAYVVMPMRL 72 >gi|222476013|ref|YP_002564534.1| hypothetical protein Hlac_3109 [Halorubrum lacusprofundi ATCC 49239] gi|222454384|gb|ACM58648.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC 49239] Length = 375 Score = 37.0 bits (84), Expect = 5.5, Method: Compositional matrix adjust. Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 18/124 (14%) Query: 78 VRKLQDG---AQISFFKENELGTEV------NISHGDSNFYLQSFPESEFPSTKEEEYVY 128 R+++DG A +SF++E + G +V ++ HG + LQS P + + Sbjct: 233 TRQIEDGHCYAGLSFYRERDEGDDVIRAALAHVFHGRDHIILQSDPLPDITEDENGSPHL 292 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLN--GIFFHINEEDLKLCAVATDGHRLAVAEV 186 S+E A V + ++E T R+ L+ +F+ EE+ + ATDG V ++ Sbjct: 293 SYEAARQVGEQILEYYEAQKGTRPSRFVLHKPSVFW---EEEREGLLDATDG----VRDL 345 Query: 187 DIVA 190 D+V+ Sbjct: 346 DLVS 349 >gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit [Mycoplasma pneumoniae M129] gi|2494195|sp|Q50313|DPO3B_MYCPN RecName: Full=DNA polymerase III subunit beta gi|11379480|gb|AAG34739.1|AE000016_1 DNA polymerase III beta subunit [Mycoplasma pneumoniae M129] gi|1209517|gb|AAC43645.1| DnaN [Mycoplasma pneumoniae] Length = 380 Score = 37.0 bits (84), Expect = 5.9, Method: Compositional matrix adjust. Identities = 59/360 (16%), Positives = 158/360 (43%), Gaps = 28/360 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ + ++++ ++L +I N + P ++L++A + + A+ + Sbjct: 1 MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60 Query: 60 SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++DV G + V + +++ +G + E + + +N L + + E Sbjct: 61 NIDVLEEGEVIVKGKIFSELI----NGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKE 116 Query: 118 FPSTKEEEYVY-----SFELASSVLKNLVERTHFAMAT--EEIRYYLNGIFFHINEEDLK 170 FP + + V ++ S+L +++ A++T E R + NG+ F+ + Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKF-NGVNFN-GSNGKQ 174 Query: 171 LCAVATDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 + A+D ++L+V E+ + + + + I G+++ I K+ +S Sbjct: 175 IFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLS- 233 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVR 282 + + + +++ ++ I+ FP + + ++ + L+ A+ R+ ++ + R Sbjct: 234 --TELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNER 291 Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 + +++ L + + ++G ++E + + + ++I N LLE ID+ +DE+ Sbjct: 292 FFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEI 351 >gi|48697221|ref|YP_024951.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B] gi|47779027|gb|AAT38390.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B] Length = 171 Score = 36.6 bits (83), Expect = 6.2, Method: Compositional matrix adjust. Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 8/87 (9%) Query: 174 VATDGHRLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 VATDGH+ V E D+ A + +I+P +A+ + S V++ + + + Sbjct: 13 VATDGHKAGVFRYAVENDVPA--GETAEVIIPHEAIDRLKAAKSDLVHFVRLEVEDRQCS 70 Query: 230 LNIESLSMSVRLI--DGEFPNYQNVIP 254 L ++++ ++ + DG +P+Y+ + P Sbjct: 71 LCVDAMGARIQFVAVDGRYPDYRRIFP 97 >gi|55376414|ref|YP_134266.1| hypothetical protein pNG6002 [Haloarcula marismortui ATCC 43049] gi|55229139|gb|AAV44560.1| unknown [Haloarcula marismortui ATCC 43049] Length = 472 Score = 36.2 bits (82), Expect = 8.8, Method: Compositional matrix adjust. Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 19/132 (14%) Query: 78 VRKLQDG---AQISFFKENELGTEV------NISHGDSNFYLQSFPESEFPSTKEEEYVY 128 R+++DG A +SF++E + G +V ++ HG + LQS P + + Sbjct: 233 TRQIEDGHCYAGLSFYRERDEGDDVIRAALAHVFHGRDHIILQSDPLPDITEDENGSPHL 292 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLN--GIFFHINEEDLKLCAVATDGHRLAVAEV 186 S+E A V + ++E T R+ L+ +F+ EE+ + ATDG V ++ Sbjct: 293 SYEAARQVGEQILEYYEAQKGTRPSRFVLHKPSVFW---EEEREGLLDATDG----VRDL 345 Query: 187 DIVAQIAKMPSI 198 D+V + + P + Sbjct: 346 DLV-WVRRRPKV 356 >gi|319440486|ref|ZP_07989642.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM 44702] Length = 136 Score = 36.2 bits (82), Expect = 9.0, Method: Compositional matrix adjust. Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 + TV + D L R + K + P+ VL++A + L++ SG + E++ + S Sbjct: 12 VSFTVAKDDFSSALAWVARSLPSKASQPILRGVLIEATEDGLQL--SGFDREVSTKVRVS 69 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 DV G I V+ L +I+ L D + + GT+V ++ G S+F L + ++ Sbjct: 70 ADVAEPGRILVAGRLASNIIGALPDKP----VRIDYDGTKVLVNCGSSHFELPAMTIDDY 125 Query: 119 PSTKE 123 P E Sbjct: 126 PVLPE 130 Searching..................................................done Results from round 2 >gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] gi|254040131|gb|ACT56927.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus str. psy62] Length = 385 Score = 446 bits (1148), Expect = e-123, Method: Composition-based stats. Identities = 385/385 (100%), Positives = 385/385 (100%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS Sbjct: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS Sbjct: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR Sbjct: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR Sbjct: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD Sbjct: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR Sbjct: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 GKDKDSKNNKDNKVNAFYVLMPMRI Sbjct: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 >gi|323135990|ref|ZP_08071073.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242] gi|322399081|gb|EFY01600.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242] Length = 372 Score = 406 bits (1044), Expect = e-111, Method: Composition-based stats. Identities = 165/387 (42%), Positives = 236/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L LGH R++ER+ TIP+ +VL+ A D L +KA+ ++EIT PA Sbjct: 1 MKVTIERAALLRALGHVHRVVERRTTIPILANVLIDARDDALTLKATDLDLEITEKAPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T+ AH LYDIVRKL +GAQ+S E G ++ + G S F L + PES+FP Sbjct: 61 VGQPGATTLPAHTLYDIVRKLPEGAQVSLDASGEAG-QLTLRSGRSRFNLSTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 ++ + F+LA + LK L+E+T FA+++EE RYYLNGI+ H + L L AVATDG Sbjct: 120 VTSGDFSHRFQLAPADLKRLIEKTQFAISSEETRYYLNGIYIHAMDVDGQLMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ A A MP +I+PRKAV E+ R++ V V LS +++ + ++ Sbjct: 180 HRLARLELPAPAGCADMPGVILPRKAVTEVQRLIEDAQGDVSVELSTNKMRFSFGDALLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V +AVDRVS +SS R +AVK++L+ KL ++ Sbjct: 240 TKLIDGTFPDYSRVIPAGNDKRLTVERDVFAKAVDRVSTISSERGRAVKMALTEGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A+E + Y+ P+D+ FN +YLL+I + S D +F+L S Sbjct: 300 VTNPDQGSAVEELEADYDGAPLDVGFNARYLLDITQQLDS-----DTALFKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D +A YVLMPMR+ Sbjct: 355 IQDRD---------GASALYVLMPMRV 372 >gi|86747129|ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris HaA2] gi|86570157|gb|ABD04714.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris HaA2] Length = 372 Score = 402 bits (1033), Expect = e-110, Method: Composition-based stats. Identities = 176/387 (45%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E +SF L +S +K L++RT FA++TEE RYYLNGI+ H +D KL AVATDG Sbjct: 120 LAAGEMSHSFSLTASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKDAKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ A A MP +IVPRK VGE+ R++ D+ + + LS +I I ++ ++ Sbjct: 180 HRLAQVDLTQPAGAAGMPGVIVPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D K NA YVLMPMR+ Sbjct: 355 IQDRD---------KKNALYVLMPMRV 372 >gi|115522032|ref|YP_778943.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisA53] gi|115515979|gb|ABJ03963.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisA53] Length = 372 Score = 401 bits (1032), Expect = e-110, Method: Composition-based stats. Identities = 172/387 (44%), Positives = 241/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A G L +KA+ ++E+T ++PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAEKGRLSLKATDLDLEVTESLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PE++FP Sbjct: 61 TATPGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 E +SF L +S +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMTHSFALPASDVKRLIDRTQFAISTEETRYYLNGIYLHSAGSAVAATLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + A MP +IVPRK VGE+ R++ + SV + LS ++I I + ++ Sbjct: 180 HRLAQLDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDSEVSVGIELSTNKIRFTIGDVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ T+ AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKTDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 IQDRDA---------KGALYVLMPMRV 372 >gi|304392440|ref|ZP_07374381.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130] gi|303295544|gb|EFL89903.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130] Length = 371 Score = 400 bits (1029), Expect = e-109, Method: Composition-based stats. Identities = 173/387 (44%), Positives = 245/387 (63%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ER+++L+ L H R++ER+NTIP+ +VLL+A DG L +KA+ ++E+T A Sbjct: 1 MRLTLERANLLKSLNHVQRVVERRNTIPILSNVLLKAEDGGLMLKATDLDLEVTEKTTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSAH LYDIVRKL DG+Q+ + G + + G S F LQ PES+FP Sbjct: 61 VEQSGATTVSAHTLYDIVRKLPDGSQVLLAVDESNG--LLVRAGRSQFRLQMLPESDFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ ++F + + K L++RT FA++TEE RYYLNGI+ H E D K L AVATDG Sbjct: 119 LTAAEFTHTFRMGCADFKALIDRTQFAISTEETRYYLNGIYLHAVEADGKEMLRAVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+ + + MP IIVPRK VGEI ++L D+ V V LS+S+I + + ++ Sbjct: 179 HRLAQAQTEAPDGASGMPGIIVPRKTVGEIQKLLEDPDAFVTVELSDSKIRFTVGEVVLT 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP N KEL ++ AVDRVS ++S R +AVKLS+S +L ++ Sbjct: 239 SKLIDGTFPDYNRVIPSGNTKELLLDRATFSSAVDRVSTIASDRGRAVKLSISDGQLTLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y++ MDI FN +YLL+I + +S+ +E F L + S Sbjct: 299 VNNPDSGSAEEELAVGYSDDDMDIGFNSRYLLDITNQLSA-----EETTFMLADAGSPTL 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR K +D A YVLMPMR+ Sbjct: 354 IREKGQD---------GALYVLMPMRV 371 >gi|158422637|ref|YP_001523929.1| DNA polymerase III subunit beta [Azorhizobium caulinodans ORS 571] gi|158329526|dbj|BAF87011.1| DNA polymerase III beta chain [Azorhizobium caulinodans ORS 571] Length = 372 Score = 399 bits (1027), Expect = e-109, Method: Composition-based stats. Identities = 164/387 (42%), Positives = 240/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+++L+ L H R++ER+NTIP+ +VL++ L +KA+ ++E+ +PA Sbjct: 1 MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIRTGTNGLSLKATDLDLEVVETVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH+LYDIVRKL DG+Q+ E G + + G + F LQ+ PE++FP Sbjct: 61 VGQDGATTVPAHVLYDIVRKLPDGSQVQLEAGGERGN-LTVRAGRARFTLQTLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 ++ +SF++ + + LV++T FA++TEE RYYLNGI+ H+ + KL AVATDG Sbjct: 120 LAAGDFSHSFKVKGAEFRRLVDKTQFAISTEETRYYLNGIYLHVADAAGTAKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+D A +P +IVPRK V EI ++L KD+ V VSLS ++I + + ++ ++ Sbjct: 180 HRLAQAELDAPEGSAGLPGVIVPRKTVAEIQKLLEDKDAEVTVSLSTTKIRVAVGAIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V+ ++ AVDRVS +SS R +AVKLS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPAGNDKILLVDKSDFAAAVDRVSTVSSERGRAVKLSIQDGKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I + D +L S Sbjct: 300 VTNPDSGSATEELEVDYAAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R K ++ YVLMPMR+ Sbjct: 355 VRD---------STKTDSLYVLMPMRV 372 >gi|316931398|ref|YP_004106380.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris DX-1] gi|315599112|gb|ADU41647.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris DX-1] Length = 372 Score = 399 bits (1026), Expect = e-109, Method: Composition-based stats. Identities = 167/387 (43%), Positives = 238/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 E ++F L +S +K L++RT FA++TEE RYYLNGI+ H L AVATDG Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSSGAASLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + MP +IVPRK VGE+ R++ ++ + + LS +I + ++ ++ Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D S A YVLMPMR+ Sbjct: 355 IQDRDSKS---------ALYVLMPMRV 372 >gi|15964088|ref|NP_384441.1| DNA polymerase III subunit beta [Sinorhizobium meliloti 1021] gi|15073264|emb|CAC41772.1| Probable DNA polymerase III, beta chain [Sinorhizobium meliloti 1021] Length = 372 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 184/387 (47%), Positives = 254/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEV-RLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF L + LK L++RT FA++TEE RYYLNGIF H + DLKL AVATDG Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK V E+ ++L S D V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP SNDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN KYLL+I ++ E VF L S Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDITGQLTG-----GEAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +A YVLMPMR+ Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372 >gi|222147282|ref|YP_002548239.1| DNA polymerase III subunit beta [Agrobacterium vitis S4] gi|221734272|gb|ACM35235.1| DNA polymerase III beta subunit [Agrobacterium vitis S4] Length = 412 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 178/387 (45%), Positives = 251/387 (64%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A L +KA+ ++E+T A PA+ Sbjct: 41 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRAEGQSLSMKATDLDLEVTEATPAN 100 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TV AHLLY+IVRKL DGA++ N G + ++ G S F LQ PE +FP Sbjct: 101 IEQAGATTVPAHLLYEIVRKLSDGAEVLLST-NPDGASMTVASGRSKFSLQCLPEQDFPD 159 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF+L +S LK L++RT FA++TEE RYYLNGI+ H E D LKL AVATDG Sbjct: 160 LTTGSFSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIYLHTIEADGKLKLRAVATDG 219 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK VGE+ +++ + D V + +S+++I NI + M+ Sbjct: 220 HRLARADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLIVALEVSDAKIRFNIGEIVMT 279 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP +NDKE+RV+C +AVDRVS +SS R +AVKL++ L +T Sbjct: 280 SKLIDGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLAIGDGHLMLT 339 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y M+I FN KYLL+I +S +E +F L + S Sbjct: 340 VNNPDSGSATEEVAVGYESDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 394 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 395 IRDTAGD---------DALYVLMPMRV 412 >gi|85711020|ref|ZP_01042081.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145] gi|85695424|gb|EAQ33361.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145] Length = 367 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 135/386 (34%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R L+ L +ER++T+P+ ++LL+ L + + E+E+ ++ Sbjct: 1 MKFTVSRDAFLKPLQIVSGAVERRHTLPILSNLLLKVEGDTLRLTGTDLEVELISSVKVE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +TV A L DIVR L D + I ++E V + G S F L S +FP Sbjct: 61 SSGGDGMVTVPAKKLLDIVRSLPDESPIELVGDDEG---VRVRSGRSKFKLSSLSADDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ +F + LK L+E+THF+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIEDWSSEVNFITSQDTLKRLMEKTHFSMANQDVRYYLNGMLFETDANMLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I +IVPRK V E+LR+L+ DS V V++ + I + + + Sbjct: 176 RLAMSNCHIEQPGLSQRQVIVPRKGVVELLRLLNEDDSEVAVAIGNNHIRVETADIVFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK++ + LRQA R SI+S+ + + V+L++++ +LC+T Sbjct: 236 KLVDGRFPDYRRVVPQGGDKQIFADRDLLRQAFGRASILSNEKFRGVRLNITAGELCITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A E + V Y ++I FN YLL++++NI + +EV F L +NSS I Sbjct: 296 TNPEQEQAEEVIEVNYEGEAIEIGFNVSYLLDVLNNIEA-----EEVCFVLSDANSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 KD DS YV+MPMR+ Sbjct: 351 EPKDDDS---------CCYVVMPMRL 367 >gi|284923784|emb|CBG36882.1| DNA polymerase III beta-subunit [Escherichia coli 042] Length = 366 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QSHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|154243960|ref|YP_001414918.1| DNA polymerase III subunit beta [Xanthobacter autotrophicus Py2] gi|154158045|gb|ABS65261.1| DNA polymerase III, beta subunit [Xanthobacter autotrophicus Py2] Length = 373 Score = 398 bits (1024), Expect = e-109, Method: Composition-based stats. Identities = 165/388 (42%), Positives = 240/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+++L+ L H R++ER+NTIP+ +VL++A LE+KA+ ++E+ ++PA Sbjct: 1 MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIKAGKNGLELKATDLDLEVVESVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+LYDIVRKL +GAQ+ E GT + + + F LQ+ PE++FP Sbjct: 61 TGQAGATTVPAHVLYDIVRKLPEGAQVQLEAGGERGT-LTVKASRARFSLQTLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL---KLCAVATD 177 E+ ++F++ + + LV++T FA++TEE RYYLNGI+ H+ E L AVATD Sbjct: 120 LAAGEFSHTFKVKGADFRRLVDKTQFAISTEETRYYLNGIYLHVTEGAGGKSMLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA AE++ A A +P +IVPRK V EI ++L K++ VSLS ++I + + S+ + Sbjct: 180 GHRLAQAELEAPAGAAGLPGVIVPRKTVAEIQKLLEDKEAEATVSLSTTKIRVQVGSIVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP NDK L V+ AVDRVS +SS R +AVKLSL+ K+ + Sbjct: 240 TSKLIDGTFPDYGRVIPQGNDKTLIVDKDEFAAAVDRVSTVSSERGRAVKLSLAEGKMTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E + V Y P+DI FN +YLL+I + D +L S Sbjct: 300 SVTNPDSGSATEELEVDYTAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R K +A YVLMPMR+ Sbjct: 355 LVRD---------STKTDALYVLMPMRV 373 >gi|317494668|ref|ZP_07953080.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] gi|316917270|gb|EFV38617.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA] Length = 366 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +L+ L + + T+P+ ++LLQ DG L + + E+E+ +P A Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLLLTGTDLEMEMIARVPLA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L DGA+I+ + G + + G S F L + P ++FP Sbjct: 61 QEHETGATTVPARKFFDICRGLPDGAEITVVLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKKLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+ R+L ++ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSVPSHSVIVPRKGVMELSRLLDGGETPLRLQIGSNNIRAHVGGFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKAGCDELKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVNYEGTDLEIGFNVSYVLDVLNALKC-----EDVHMLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|299133398|ref|ZP_07026593.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2] gi|298593535|gb|EFI53735.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2] Length = 372 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 166/387 (42%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A++ L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRADNARLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF L+++ +K L++RT FA++TEE RYYLNGI+ H + ++ L AVATDG Sbjct: 120 LAAGEMTHSFTLSAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGSGKEQTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +IVPRK VGE+ R++ ++ + + LS+ +I + ++ ++ Sbjct: 180 HRLAQFDLPLPKSAVGMPGVIVPRKTVGEVQRLIEDNEAEISIELSQGKIRFTLANVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +N+KEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELIVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I D V +L S Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----DAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ K +A YVLMPMR+ Sbjct: 355 VQDK---------ANRDALYVLMPMRV 372 >gi|307301232|ref|ZP_07580994.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C] gi|307317903|ref|ZP_07597340.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] gi|306896305|gb|EFN27054.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] gi|306903688|gb|EFN34275.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C] Length = 372 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 184/387 (47%), Positives = 254/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEV-RLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF L + LK L++RT FA++TEE RYYLNGIF H + DLKL AVATDG Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK V E+ ++L S D V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP SNDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN KYLL+I ++ E VF L S Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDITGQLTGS-----EAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +A YVLMPMR+ Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372 >gi|90420503|ref|ZP_01228410.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans SI85-9A1] gi|90335231|gb|EAS48984.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans SI85-9A1] Length = 374 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 173/389 (44%), Positives = 247/389 (63%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ERS++L+ L H R++ER+NTIP+ +VLL+ L +KA+ ++EIT + PA+ Sbjct: 1 MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLKTEGEGLRLKATDLDLEITESAPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV AHLLYDIVRKL DGA++S N GT++ +S G SNF LQ PES+FP Sbjct: 61 GEQEGATTVPAHLLYDIVRKLPDGAEVS-LATNAEGTQMTVSSGRSNFRLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 ++F+L ++ L L+ERT FA++TEE RYYLNGI+ H + DL+L AVATDG Sbjct: 120 ITAGTLSHAFKLKAAELGRLIERTQFAISTEETRYYLNGIYLHTIEADGDLQLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236 HRLA A+ A MP II+PRK VGE+ ++L ++ + V LS+++I I ++ Sbjct: 180 HRLARADQKAPAGSEGMPGIIIPRKTVGELQKLLGDSNDEAEISVELSDAKIRFTIGAVV 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M+ +LIDG FP+YQ VIP +NDK L ++ AVDRVS +SS R +AVKL+++ +L Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKALTLDRQTFSAAVDRVSTISSERGRAVKLAVADSQLV 299 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +TV++PD G A E + V Y+ ++I FN KYLL+I + +S DE VF L S Sbjct: 300 LTVNSPDSGTATEELAVGYDSDEIEIGFNAKYLLDITNQLSG-----DETVFMLADPGSP 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D+ YVLMPMR+ Sbjct: 355 TLIKDGGDDA---------TLYVLMPMRV 374 >gi|293464025|ref|ZP_06664439.1| DNA polymerase III [Escherichia coli B088] gi|300815052|ref|ZP_07095277.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1] gi|291321657|gb|EFE61093.1| DNA polymerase III [Escherichia coli B088] gi|300531944|gb|EFK53006.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1] gi|323944173|gb|EGB40253.1| DNA polymerase III [Escherichia coli H120] Length = 366 Score = 398 bits (1023), Expect = e-109, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QQHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|192288435|ref|YP_001989040.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris TIE-1] gi|192282184|gb|ACE98564.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris TIE-1] Length = 372 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 167/387 (43%), Positives = 240/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E ++F L +S +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + MP +IVPRK VGE+ R++ ++ + + LS +I + ++ ++ Sbjct: 180 HRLAQLDLTLPSGADGMPGLIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKELRV+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELRVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D S A YVLMPMR+ Sbjct: 355 IQDRDSKS---------ALYVLMPMRV 372 >gi|39933082|ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris CGA009] gi|39652707|emb|CAE25446.1| DNA polymerase III beta subunit [Rhodopseudomonas palustris CGA009] Length = 372 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 166/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E ++F L +S +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + MP +IVPRK VGE+ R++ ++ + + LS +I + ++ ++ Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D S A YVLMPMR+ Sbjct: 355 IQDRDSKS---------ALYVLMPMRV 372 >gi|15804295|ref|NP_290334.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 EDL933] gi|15833890|ref|NP_312663.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. Sakai] gi|16131569|ref|NP_418156.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|26250442|ref|NP_756482.1| DNA polymerase III subunit beta [Escherichia coli CFT073] gi|74314015|ref|YP_312434.1| DNA polymerase III subunit beta [Shigella sonnei Ss046] gi|82546035|ref|YP_409982.1| DNA polymerase III subunit beta [Shigella boydii Sb227] gi|82779230|ref|YP_405579.1| DNA polymerase III subunit beta [Shigella dysenteriae Sd197] gi|89110312|ref|AP_004092.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. W3110] gi|91213223|ref|YP_543209.1| DNA polymerase III subunit beta [Escherichia coli UTI89] gi|110644044|ref|YP_671774.1| DNA polymerase III subunit beta [Escherichia coli 536] gi|117625977|ref|YP_859300.1| DNA polymerase III subunit beta [Escherichia coli APEC O1] gi|157156673|ref|YP_001465186.1| DNA polymerase III subunit beta [Escherichia coli E24377A] gi|157163181|ref|YP_001460499.1| DNA polymerase III subunit beta [Escherichia coli HS] gi|168748583|ref|ZP_02773605.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|168753590|ref|ZP_02778597.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|168759887|ref|ZP_02784894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|168766188|ref|ZP_02791195.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|168772264|ref|ZP_02797271.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|168779923|ref|ZP_02804930.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|168798736|ref|ZP_02823743.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC508] gi|170018063|ref|YP_001723017.1| DNA polymerase III subunit beta [Escherichia coli ATCC 8739] gi|170083203|ref|YP_001732523.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170682488|ref|YP_001746029.1| DNA polymerase III subunit beta [Escherichia coli SMS-3-5] gi|187730327|ref|YP_001882465.1| DNA polymerase III subunit beta [Shigella boydii CDC 3083-94] gi|188492542|ref|ZP_02999812.1| DNA polymerase III, beta subunit [Escherichia coli 53638] gi|191165808|ref|ZP_03027646.1| DNA polymerase III, beta subunit [Escherichia coli B7A] gi|191170441|ref|ZP_03031994.1| DNA polymerase III, beta subunit [Escherichia coli F11] gi|193063787|ref|ZP_03044874.1| DNA polymerase III, beta subunit [Escherichia coli E22] gi|194428142|ref|ZP_03060686.1| DNA polymerase III, beta subunit [Escherichia coli B171] gi|194431323|ref|ZP_03063616.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012] gi|194435912|ref|ZP_03068015.1| DNA polymerase III, beta subunit [Escherichia coli 101-1] gi|195936322|ref|ZP_03081704.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. EC4024] gi|208807282|ref|ZP_03249619.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208813217|ref|ZP_03254546.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208820496|ref|ZP_03260816.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209400437|ref|YP_002273227.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209921178|ref|YP_002295262.1| DNA polymerase III subunit beta [Escherichia coli SE11] gi|217324148|ref|ZP_03440232.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218551231|ref|YP_002385023.1| DNA polymerase III subunit beta [Escherichia fergusonii ATCC 35469] gi|218556266|ref|YP_002389180.1| DNA polymerase III subunit beta [Escherichia coli IAI1] gi|218560776|ref|YP_002393689.1| DNA polymerase III subunit beta [Escherichia coli S88] gi|218691989|ref|YP_002400201.1| DNA polymerase III subunit beta [Escherichia coli ED1a] gi|218697423|ref|YP_002405090.1| DNA polymerase III subunit beta [Escherichia coli 55989] gi|218702550|ref|YP_002410179.1| DNA polymerase III subunit beta [Escherichia coli IAI39] gi|218707347|ref|YP_002414866.1| DNA polymerase III subunit beta [Escherichia coli UMN026] gi|227883922|ref|ZP_04001727.1| DNA-directed DNA polymerase [Escherichia coli 83972] gi|237703501|ref|ZP_04533982.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA] gi|238902791|ref|YP_002928587.1| DNA polymerase III, beta subunit [Escherichia coli BW2952] gi|253771437|ref|YP_003034268.1| DNA polymerase III subunit beta [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|254038918|ref|ZP_04872970.1| DNA polymerase III [Escherichia sp. 1_1_43] gi|254163652|ref|YP_003046760.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606] gi|254795704|ref|YP_003080541.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. TW14359] gi|256021281|ref|ZP_05435146.1| DNA polymerase III subunit beta [Shigella sp. D9] gi|256025568|ref|ZP_05439433.1| DNA polymerase III subunit beta [Escherichia sp. 4_1_40B] gi|260846514|ref|YP_003224292.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str. 12009] gi|260857888|ref|YP_003231779.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str. 11368] gi|260870432|ref|YP_003236834.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str. 11128] gi|261225854|ref|ZP_05940135.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. FRIK2000] gi|261258899|ref|ZP_05951432.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. FRIK966] gi|291285120|ref|YP_003501938.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. CB9615] gi|293407341|ref|ZP_06651263.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412] gi|293413155|ref|ZP_06655821.1| DNA polymerase III [Escherichia coli B354] gi|293417174|ref|ZP_06659801.1| DNA polymerase III [Escherichia coli B185] gi|297518856|ref|ZP_06937242.1| DNA polymerase III subunit beta [Escherichia coli OP50] gi|298383082|ref|ZP_06992677.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302] gi|300824314|ref|ZP_07104430.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7] gi|300896030|ref|ZP_07114591.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1] gi|300903024|ref|ZP_07120966.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1] gi|300917469|ref|ZP_07134129.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1] gi|300925525|ref|ZP_07141400.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1] gi|300932332|ref|ZP_07147600.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1] gi|300940886|ref|ZP_07155413.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1] gi|300947538|ref|ZP_07161715.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1] gi|300956293|ref|ZP_07168595.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1] gi|300983652|ref|ZP_07176693.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1] gi|300984541|ref|ZP_07177031.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1] gi|301020910|ref|ZP_07184965.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1] gi|301028494|ref|ZP_07191734.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1] gi|301047519|ref|ZP_07194595.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1] gi|301305953|ref|ZP_07212035.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1] gi|301325007|ref|ZP_07218557.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1] gi|301644373|ref|ZP_07244374.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1] gi|306815946|ref|ZP_07450084.1| DNA polymerase III subunit beta [Escherichia coli NC101] gi|307140401|ref|ZP_07499757.1| DNA polymerase III subunit beta [Escherichia coli H736] gi|307313230|ref|ZP_07592855.1| DNA polymerase III, beta subunit [Escherichia coli W] gi|309784249|ref|ZP_07678888.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617] gi|309795750|ref|ZP_07690165.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7] gi|312972007|ref|ZP_07786181.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70] gi|331644425|ref|ZP_08345554.1| DNA polymerase III, beta subunit [Escherichia coli H736] gi|331649527|ref|ZP_08350613.1| DNA polymerase III, beta subunit [Escherichia coli M605] gi|331655361|ref|ZP_08356360.1| DNA polymerase III, beta subunit [Escherichia coli M718] gi|331660043|ref|ZP_08360981.1| DNA polymerase III, beta subunit [Escherichia coli TA206] gi|331665351|ref|ZP_08366252.1| DNA polymerase III, beta subunit [Escherichia coli TA143] gi|331670545|ref|ZP_08371384.1| DNA polymerase III, beta subunit [Escherichia coli TA271] gi|331675191|ref|ZP_08375944.1| DNA polymerase III, beta subunit [Escherichia coli TA280] gi|331679799|ref|ZP_08380469.1| DNA polymerase III, beta subunit [Escherichia coli H591] gi|331685425|ref|ZP_08386011.1| DNA polymerase III, beta subunit [Escherichia coli H299] gi|332282512|ref|ZP_08394925.1| DNA polymerase III subunit beta [Shigella sp. D9] gi|71159295|sp|P0A990|DPO3B_ECO57 RecName: Full=DNA polymerase III subunit beta gi|71159296|sp|P0A989|DPO3B_ECOL6 RecName: Full=DNA polymerase III subunit beta gi|71159297|sp|P0A988|DPO3B_ECOLI RecName: Full=DNA polymerase III subunit beta gi|494833|pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of Escherichia Coli Dna Polymerase Iii Holoenzyme: A Sliding Dna Clamp gi|494834|pdb|2POL|B Chain B, Three-Dimensional Structure Of The Beta Subunit Of Escherichia Coli Dna Polymerase Iii Holoenzyme: A Sliding Dna Clamp gi|34809863|pdb|1MMI|A Chain A, E. Coli Dna Polymerase Beta Subunit gi|34809864|pdb|1MMI|B Chain B, E. Coli Dna Polymerase Beta Subunit gi|39654966|pdb|1UNN|A Chain A, Complex Of Beta-Clamp Processivity Factor And Little Finger Domain Of Poliv gi|39654967|pdb|1UNN|B Chain B, Complex Of Beta-Clamp Processivity Factor And Little Finger Domain Of Poliv gi|51247132|pdb|1OK7|A Chain A, A Conserved Protein Binding-Site On Bacterial Sliding Clamps gi|51247133|pdb|1OK7|B Chain B, A Conserved Protein Binding-Site On Bacterial Sliding Clamps gi|166235467|pdb|3BEP|A Chain A, Structure Of A Sliding Clamp On Dna gi|166235468|pdb|3BEP|B Chain B, Structure Of A Sliding Clamp On Dna gi|194709177|pdb|3D1E|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Ii Peptide gi|194709178|pdb|3D1E|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Ii Peptide gi|194709180|pdb|3D1F|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Iii Peptide gi|194709181|pdb|3D1F|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To A Polymerase Iii Peptide gi|194709184|pdb|3D1G|A Chain A, Structure Of A Small Molecule Inhibitor Bound To A Dna Sliding Clamp gi|194709185|pdb|3D1G|B Chain B, Structure Of A Small Molecule Inhibitor Bound To A Dna Sliding Clamp gi|12518540|gb|AAG58898.1|AE005601_4 DNA polymerase III, beta-subunit [Escherichia coli O157:H7 str. EDL933] gi|26110872|gb|AAN83056.1|AE016769_171 DNA polymerase III, beta chain [Escherichia coli CFT073] gi|145761|gb|AAB59150.1| DNA polymerase III beta-subunit [Escherichia coli] gi|290549|gb|AAA62052.1| DNA polymerase III beta-subunit [Escherichia coli] gi|1790136|gb|AAC76724.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. MG1655] gi|13364111|dbj|BAB38059.1| DNA polymerase III beta-subunit [Escherichia coli O157:H7 str. Sakai] gi|73857492|gb|AAZ90199.1| DNA polymerase III beta subunit [Shigella sonnei Ss046] gi|81243378|gb|ABB64088.1| DNA polymerase III, beta-subunit [Shigella dysenteriae Sd197] gi|81247446|gb|ABB68154.1| DNA polymerase III beta-subunit [Shigella boydii Sb227] gi|85676343|dbj|BAE77593.1| DNA polymerase III, beta subunit [Escherichia coli str. K12 substr. W3110] gi|91074797|gb|ABE09678.1| DNA polymerase III, beta-subunit [Escherichia coli UTI89] gi|110345636|gb|ABG71873.1| DNA polymerase III, beta chain [Escherichia coli 536] gi|115515101|gb|ABJ03176.1| DNA polymerase III subunit beta [Escherichia coli APEC O1] gi|157068861|gb|ABV08116.1| DNA polymerase III, beta subunit [Escherichia coli HS] gi|157078703|gb|ABV18411.1| DNA polymerase III, beta subunit [Escherichia coli E24377A] gi|169752991|gb|ACA75690.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 8739] gi|169891038|gb|ACB04745.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12 substr. DH10B] gi|170520206|gb|ACB18384.1| DNA polymerase III, beta subunit [Escherichia coli SMS-3-5] gi|187427319|gb|ACD06593.1| DNA polymerase III, beta subunit [Shigella boydii CDC 3083-94] gi|187771361|gb|EDU35205.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4196] gi|188016968|gb|EDU55090.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4113] gi|188487741|gb|EDU62844.1| DNA polymerase III, beta subunit [Escherichia coli 53638] gi|189002623|gb|EDU71609.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4076] gi|189359039|gb|EDU77458.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4401] gi|189364639|gb|EDU83058.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4486] gi|189369478|gb|EDU87894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4501] gi|189378717|gb|EDU97133.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC508] gi|190904132|gb|EDV63843.1| DNA polymerase III, beta subunit [Escherichia coli B7A] gi|190909249|gb|EDV68835.1| DNA polymerase III, beta subunit [Escherichia coli F11] gi|192930502|gb|EDV83109.1| DNA polymerase III, beta subunit [Escherichia coli E22] gi|194413900|gb|EDX30178.1| DNA polymerase III, beta subunit [Escherichia coli B171] gi|194420778|gb|EDX36854.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012] gi|194425455|gb|EDX41439.1| DNA polymerase III, beta subunit [Escherichia coli 101-1] gi|208727083|gb|EDZ76684.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4206] gi|208734494|gb|EDZ83181.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4045] gi|208740619|gb|EDZ88301.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4042] gi|209161837|gb|ACI39270.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. EC4115] gi|209754118|gb|ACI75366.1| replication initiation protein DnaA [Escherichia coli] gi|209754120|gb|ACI75367.1| replication initiation protein DnaA [Escherichia coli] gi|209754122|gb|ACI75368.1| replication initiation protein DnaA [Escherichia coli] gi|209754124|gb|ACI75369.1| replication initiation protein DnaA [Escherichia coli] gi|209754126|gb|ACI75370.1| replication initiation protein DnaA [Escherichia coli] gi|209914437|dbj|BAG79511.1| DNA polymerase III beta subunit [Escherichia coli SE11] gi|217320369|gb|EEC28793.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14588] gi|218354155|emb|CAV00755.1| DNA polymerase III, beta subunit [Escherichia coli 55989] gi|218358773|emb|CAQ91430.1| DNA polymerase III, beta subunit [Escherichia fergusonii ATCC 35469] gi|218363035|emb|CAR00674.1| DNA polymerase III, beta subunit [Escherichia coli IAI1] gi|218367545|emb|CAR05330.1| DNA polymerase III, beta subunit [Escherichia coli S88] gi|218372536|emb|CAR20411.1| DNA polymerase III, beta subunit [Escherichia coli IAI39] gi|218429553|emb|CAR10376.1| DNA polymerase III, beta subunit [Escherichia coli ED1a] gi|218434444|emb|CAR15372.1| DNA polymerase III, beta subunit [Escherichia coli UMN026] gi|222035415|emb|CAP78160.1| DNA polymerase III subunit beta [Escherichia coli LF82] gi|226838883|gb|EEH70910.1| DNA polymerase III [Escherichia sp. 1_1_43] gi|226902765|gb|EEH89024.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA] gi|227839200|gb|EEJ49666.1| DNA-directed DNA polymerase [Escherichia coli 83972] gi|238860831|gb|ACR62829.1| DNA polymerase III, beta subunit [Escherichia coli BW2952] gi|242379240|emb|CAQ34045.1| dnaN, subunit of DNA polymerase III, beta subunit and DNA polymerase III, holoenzyme [Escherichia coli BL21(DE3)] gi|253322481|gb|ACT27083.1| DNA polymerase III, beta subunit [Escherichia coli 'BL21-Gold(DE3)pLysS AG'] gi|253975553|gb|ACT41224.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606] gi|253979709|gb|ACT45379.1| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)] gi|254595104|gb|ACT74465.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str. TW14359] gi|257756537|dbj|BAI28039.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str. 11368] gi|257761661|dbj|BAI33158.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str. 12009] gi|257766788|dbj|BAI38283.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str. 11128] gi|260447281|gb|ACX37703.1| DNA polymerase III, beta subunit [Escherichia coli DH1] gi|281180755|dbj|BAI57085.1| DNA polymerase III beta subunit [Escherichia coli SE15] gi|290764993|gb|ADD58954.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. CB9615] gi|291425632|gb|EFE98668.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412] gi|291431205|gb|EFF04198.1| DNA polymerase III [Escherichia coli B185] gi|291468288|gb|EFF10783.1| DNA polymerase III [Escherichia coli B354] gi|294492870|gb|ADE91626.1| DNA polymerase III, beta subunit [Escherichia coli IHE3034] gi|298276918|gb|EFI18436.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302] gi|299878456|gb|EFI86667.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1] gi|300300579|gb|EFJ56964.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1] gi|300306875|gb|EFJ61395.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1] gi|300316880|gb|EFJ66664.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1] gi|300360090|gb|EFJ75960.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1] gi|300398377|gb|EFJ81915.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1] gi|300404930|gb|EFJ88468.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1] gi|300408374|gb|EFJ91912.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1] gi|300415273|gb|EFJ98583.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1] gi|300418365|gb|EFK01676.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1] gi|300452875|gb|EFK16495.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1] gi|300454367|gb|EFK17860.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1] gi|300459918|gb|EFK23411.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1] gi|300523201|gb|EFK44270.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7] gi|300838804|gb|EFK66564.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1] gi|300848101|gb|EFK75861.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1] gi|301077314|gb|EFK92120.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1] gi|305850342|gb|EFM50799.1| DNA polymerase III subunit beta [Escherichia coli NC101] gi|306906913|gb|EFN37422.1| DNA polymerase III, beta subunit [Escherichia coli W] gi|307555841|gb|ADN48616.1| DNA polymerase III, beta-subunit [Escherichia coli ABU 83972] gi|307628777|gb|ADN73081.1| DNA polymerase III subunit beta [Escherichia coli UM146] gi|308120629|gb|EFO57891.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7] gi|308927756|gb|EFP73224.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617] gi|309704148|emb|CBJ03495.1| DNA polymerase III beta-subunit [Escherichia coli ETEC H10407] gi|310334384|gb|EFQ00589.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70] gi|312948268|gb|ADR29095.1| DNA polymerase III subunit beta [Escherichia coli O83:H1 str. NRG 857C] gi|315063007|gb|ADT77334.1| DNA polymerase III, beta subunit [Escherichia coli W] gi|315138285|dbj|BAJ45444.1| DNA polymerase III subunit beta [Escherichia coli DH1] gi|315254612|gb|EFU34580.1| DNA polymerase III, beta subunit [Escherichia coli MS 85-1] gi|315285494|gb|EFU44939.1| DNA polymerase III, beta subunit [Escherichia coli MS 110-3] gi|315292859|gb|EFU52211.1| DNA polymerase III, beta subunit [Escherichia coli MS 153-1] gi|315296899|gb|EFU56187.1| DNA polymerase III, beta subunit [Escherichia coli MS 16-3] gi|315618593|gb|EFU99179.1| DNA polymerase III, beta subunit [Escherichia coli 3431] gi|320174825|gb|EFW49948.1| DNA polymerase III beta subunit [Shigella dysenteriae CDC 74-1112] gi|320180042|gb|EFW54984.1| DNA polymerase III beta subunit [Shigella boydii ATCC 9905] gi|320185534|gb|EFW60300.1| DNA polymerase III beta subunit [Shigella flexneri CDC 796-83] gi|320191199|gb|EFW65849.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str. EC1212] gi|320193753|gb|EFW68386.1| DNA polymerase III beta subunit [Escherichia coli WV_060327] gi|320201271|gb|EFW75852.1| DNA polymerase III beta subunit [Escherichia coli EC4100B] gi|320639426|gb|EFX09041.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. G5101] gi|320644869|gb|EFX13905.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. 493-89] gi|320650133|gb|EFX18629.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. H 2687] gi|320655481|gb|EFX23416.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. 3256-97 TW 07815] gi|320661107|gb|EFX28543.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. USDA 5905] gi|320666233|gb|EFX33239.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. LSU-61] gi|323155377|gb|EFZ41560.1| DNA polymerase III, beta subunit [Escherichia coli EPECa14] gi|323161047|gb|EFZ46966.1| DNA polymerase III, beta subunit [Escherichia coli E128010] gi|323164687|gb|EFZ50482.1| DNA polymerase III, beta subunit [Shigella sonnei 53G] gi|323173319|gb|EFZ58948.1| DNA polymerase III, beta subunit [Escherichia coli LT-68] gi|323177713|gb|EFZ63297.1| DNA polymerase III, beta subunit [Escherichia coli 1180] gi|323182496|gb|EFZ67900.1| DNA polymerase III, beta subunit [Escherichia coli 1357] gi|323189564|gb|EFZ74844.1| DNA polymerase III, beta subunit [Escherichia coli RN587/1] gi|323376399|gb|ADX48667.1| DNA polymerase III, beta subunit [Escherichia coli KO11] gi|323934948|gb|EGB31326.1| DNA polymerase III [Escherichia coli E1520] gi|323949944|gb|EGB45828.1| DNA polymerase III [Escherichia coli H252] gi|323955005|gb|EGB50783.1| DNA polymerase III [Escherichia coli H263] gi|323959766|gb|EGB55416.1| DNA polymerase III [Escherichia coli H489] gi|323965762|gb|EGB61213.1| DNA polymerase III [Escherichia coli M863] gi|323971178|gb|EGB66424.1| DNA polymerase III [Escherichia coli TA007] gi|323975232|gb|EGB70336.1| DNA polymerase III [Escherichia coli TW10509] gi|324008037|gb|EGB77256.1| DNA polymerase III, beta subunit [Escherichia coli MS 57-2] gi|324012738|gb|EGB81957.1| DNA polymerase III, beta subunit [Escherichia coli MS 60-1] gi|324018431|gb|EGB87650.1| DNA polymerase III, beta subunit [Escherichia coli MS 117-3] gi|324115947|gb|EGC09873.1| DNA polymerase III [Escherichia coli E1167] gi|326337250|gb|EGD61085.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str. 1044] gi|326341621|gb|EGD65410.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str. 1125] gi|327250844|gb|EGE62546.1| DNA polymerase III, beta subunit [Escherichia coli STEC_7v] gi|331036719|gb|EGI08945.1| DNA polymerase III, beta subunit [Escherichia coli H736] gi|331042025|gb|EGI14169.1| DNA polymerase III, beta subunit [Escherichia coli M605] gi|331047376|gb|EGI19454.1| DNA polymerase III, beta subunit [Escherichia coli M718] gi|331053258|gb|EGI25291.1| DNA polymerase III, beta subunit [Escherichia coli TA206] gi|331057861|gb|EGI29847.1| DNA polymerase III, beta subunit [Escherichia coli TA143] gi|331062607|gb|EGI34527.1| DNA polymerase III, beta subunit [Escherichia coli TA271] gi|331067636|gb|EGI39038.1| DNA polymerase III, beta subunit [Escherichia coli TA280] gi|331072971|gb|EGI44296.1| DNA polymerase III, beta subunit [Escherichia coli H591] gi|331077796|gb|EGI49008.1| DNA polymerase III, beta subunit [Escherichia coli H299] gi|332084052|gb|EGI89259.1| DNA polymerase III, beta subunit [Shigella dysenteriae 155-74] gi|332084891|gb|EGI90074.1| DNA polymerase III, beta subunit [Shigella boydii 5216-82] gi|332089554|gb|EGI94658.1| DNA polymerase III, beta subunit [Shigella boydii 3594-74] gi|332104864|gb|EGJ08210.1| DNA polymerase III subunit beta [Shigella sp. D9] gi|332345692|gb|AEE59026.1| DNA polymerase III, beta subunit DnaN [Escherichia coli UMNK88] Length = 366 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|215489041|ref|YP_002331472.1| DNA polymerase III subunit beta [Escherichia coli O127:H6 str. E2348/69] gi|312967889|ref|ZP_07782101.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75] gi|215267113|emb|CAS11560.1| DNA polymerase III, beta subunit [Escherichia coli O127:H6 str. E2348/69] gi|312287450|gb|EFR15358.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75] Length = 366 Score = 398 bits (1022), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPMRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|209551896|ref|YP_002283813.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. trifolii WSM2304] gi|209537652|gb|ACI57587.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv. trifolii WSM2304] Length = 372 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 186/387 (48%), Positives = 262/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ ++ G+ + + G S F LQ PES+FP Sbjct: 61 VEQSGATTVPAHLLYDIVRKLPDGSEVLLATSSDGGS-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH ++ +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + +V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|325499508|gb|EGC97367.1| DNA polymerase III subunit beta [Escherichia fergusonii ECD227] Length = 366 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGTTTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|324111598|gb|EGC05579.1| DNA polymerase III [Escherichia fergusonii B253] Length = 366 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 HPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|193069140|ref|ZP_03050097.1| DNA polymerase III, beta subunit [Escherichia coli E110019] gi|192957464|gb|EDV87910.1| DNA polymerase III, beta subunit [Escherichia coli E110019] Length = 366 Score = 397 bits (1021), Expect = e-108, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPISQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|294638326|ref|ZP_06716579.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685] gi|291088579|gb|EFE21140.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685] Length = 366 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +++ L + + T+P+ ++LLQ DG L + + E+E+ +P S Sbjct: 1 MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L DGA+IS + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L ++ +++ + + + ++ + Sbjct: 176 RLAVCSMPI-GQSLPHHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + VV L + SSV I Sbjct: 295 NNPEQEEAEELLDVNYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDAASQA---------AVYVVMPMRL 366 >gi|146337177|ref|YP_001202225.1| DNA polymerase III subunit beta [Bradyrhizobium sp. ORS278] gi|146189983|emb|CAL73975.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS278] Length = 372 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 168/387 (43%), Positives = 240/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L ++A+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E ++F + + +K+L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + A+MP +IVPRK VGE+ R++ DS +K+ LS+ +I + + ++ Sbjct: 180 HRLAQVDLPQPSGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V RL S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D NA YVLMPMR+ Sbjct: 355 IQDRDN---------RNALYVLMPMRV 372 >gi|238917985|ref|YP_002931499.1| DNA polymerase III subunit beta [Edwardsiella ictaluri 93-146] gi|269137360|ref|YP_003294060.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202] gi|238867553|gb|ACR67264.1| DNA polymerase III, beta subunit, putative [Edwardsiella ictaluri 93-146] gi|267983020|gb|ACY82849.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202] gi|304557461|gb|ADM40125.1| DNA polymerase III beta subunit [Edwardsiella tarda FL6-60] Length = 366 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK VER +++ L + + T+P+ ++LLQ DG L + + E+E+ +P Sbjct: 1 MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L DGA+IS + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L ++ +++ + + + ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + VV L + SSV I Sbjct: 295 NNPEQEEAEELLDVDYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDAASQA---------AVYVVMPMRL 366 >gi|56459114|ref|YP_154395.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR] gi|56178124|gb|AAV80846.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR] Length = 367 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 136/386 (35%), Positives = 219/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R L+ L +ER++T+P+ ++LLQ ++G L++ + E+E+ A+P Sbjct: 1 MKFSINRDAFLKPLQVVSGAVERRHTLPILSNLLLQVDNGQLKLTGTDLEVELVSAVPLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ ++TV A L DIVR L +G+ I F + + T + G S F L + +FP Sbjct: 61 SADMDAAVTVPAKKLLDIVRSLPEGSTIEFTSQEDSAT---VKSGRSKFKLSTLSSDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +VLK+L+ +THF+MA +++RYYLNG+ F ++ L +VATDGH Sbjct: 118 NIDDWKSDIHLVTEQAVLKDLMLKTHFSMANQDVRYYLNGMLFET--DNGMLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I +IVPRK V E+LR+L D V VS+ + I + L + Sbjct: 176 RLAMSTCAIDQPGLAQRQVIVPRKGVVELLRLLGDDDQEVSVSIGNNHIRVETPELVFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + LRQ+ R SI+S+ + + V+L+LSS +LC+T Sbjct: 236 KLVDGRFPDYRRVLPSGGDKVIVAHRDALRQSFGRASILSNEKFRGVRLNLSSGELCITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A E + V Y ++I FN YLL++++NI D++V F L SNSS I Sbjct: 296 TNPEQEQAEEVIEVDYQGDDLEIGFNVSYLLDVLNNID-----DEQVSFTLSDSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S YV+MPMR+ Sbjct: 351 EPQHDES---------CCYVIMPMRL 367 >gi|92115635|ref|YP_575364.1| DNA polymerase III subunit beta [Nitrobacter hamburgensis X14] gi|91798529|gb|ABE60904.1| DNA polymerase III, beta subunit [Nitrobacter hamburgensis X14] Length = 372 Score = 397 bits (1020), Expect = e-108, Method: Composition-based stats. Identities = 165/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLKATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+ YDIVRKL DGAQI + + + I G S F LQ+ PE++FP Sbjct: 61 TATGGATTVPAHIFYDIVRKLPDGAQIVLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E +SF+LA++ +K L++RT FA++TEE RYYLNGI+ H ++ L VATDG Sbjct: 120 LAAGEMTHSFKLAAADIKRLIDRTQFAISTEETRYYLNGIYLHSAGSAKNATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +I+PRK VGE+ R++ ++ V + LS+ +I I ++ ++ Sbjct: 180 HRLAQVDLALPNGAEGMPGVIIPRKTVGEVQRLIEDNEAEVGIELSQGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASEPLDIGFNSRYLLDIAAQIEG-----EGAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD A YVLMPMR+ Sbjct: 355 VHDKD---------SKGALYVLMPMRV 372 >gi|209883689|ref|YP_002287546.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5] gi|209871885|gb|ACI91681.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5] Length = 372 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 166/387 (42%), Positives = 242/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAENAKLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 E +SF L ++ +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAAEQTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + A MP +IVPRK VGE+ R++ ++ + + LS+++I + ++ ++ Sbjct: 180 HRLAQFDLPLPKSAAGMPGVIVPRKTVGEVQRLIEDTEAEIAIELSQAKIRFTLANVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +N+KEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELVVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y P+DI FN +YLL+I I + V +L S Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----EAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ K +A YVLMPMR+ Sbjct: 355 VQDK---------ANRDALYVLMPMRV 372 >gi|116250102|ref|YP_765940.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. viciae 3841] gi|115254750|emb|CAK05824.1| putative DNA polymerase III, beta chain [Rhizobium leguminosarum bv. viciae 3841] Length = 372 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 187/387 (48%), Positives = 261/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ ++ G+ + + G S F LQ PES+FP Sbjct: 61 VEQPGATTVPAHLLYDIVRKLSDGSEVLLATSSDGGS-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E + LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|227824176|ref|YP_002828149.1| DNA polymerase III subunit beta [Sinorhizobium fredii NGR234] gi|227343178|gb|ACP27396.1| DNA polymerase III, beta subunit [Sinorhizobium fredii NGR234] Length = 372 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 182/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEV-RLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + +SF L ++ LK L++RT FA++TEE RYYLNGIF H E +LKL AVATDG Sbjct: 120 LTAGSFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVENKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+++ A MP II+PRK V E+ ++L + D V +S+++I L I S+ M+ Sbjct: 180 HRLARADIEAPAGSEGMPGIIIPRKTVSELQKLLDTPDVVVTAEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALTDGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A+E + V Y P++I FN KYLL+I ++ + E VF L S Sbjct: 300 VNNPDSGSAMEELPVGYENDPLEIGFNAKYLLDITAQLTGN-----EAVFMLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372 >gi|241207273|ref|YP_002978369.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. trifolii WSM1325] gi|240861163|gb|ACS58830.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv. trifolii WSM1325] Length = 372 Score = 396 bits (1019), Expect = e-108, Method: Composition-based stats. Identities = 187/387 (48%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G + + G S F LQ PES+FP Sbjct: 61 VEQPGATTVPAHLLYDIVRKLSDGSEVLLATSPDGGA-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH E + LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|197262814|ref|ZP_03162888.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] gi|197241069|gb|EDY23689.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA23] Length = 366 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 NA YV+MPMR+ Sbjct: 350 EDA---------ASQNAAYVVMPMRL 366 >gi|170766918|ref|ZP_02901371.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627] gi|170124356|gb|EDS93287.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627] Length = 366 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|156936081|ref|YP_001439997.1| DNA polymerase III subunit beta [Cronobacter sakazakii ATCC BAA-894] gi|156534335|gb|ABU79161.1| hypothetical protein ESA_03975 [Cronobacter sakazakii ATCC BAA-894] Length = 366 Score = 396 bits (1018), Expect = e-108, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + +S G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F EDL+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + + S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPVGQPLPN-HSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASSSAAYVVMPMRL 366 >gi|242237462|ref|YP_002985643.1| DNA polymerase III subunit beta [Dickeya dadantii Ech703] gi|242129519|gb|ACS83821.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech703] Length = 366 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +FEL + LK L+E T F+MA +++RYYLNG+ F + + L+ VATDGH Sbjct: 118 NLDDWQSEVAFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGDGLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + + S+IVPRK V E++R+L ++ +++ + + I ++ + Sbjct: 176 RLAVCSMPVGQPLP-SHSVIVPRKGVMELVRLLDGGETPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFARAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L SSV + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EDVRMLLADPASSVQL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDCASQA---------AAYVVMPMRL 366 >gi|114704370|ref|ZP_01437278.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506] gi|114539155|gb|EAU42275.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506] Length = 374 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 173/389 (44%), Positives = 240/389 (61%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ERS++L+ L H R++ER+NTIP+ +VLL+A L +KA+ +IEIT + A Sbjct: 1 MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLRAKAETLGLKATDLDIEITEEVAAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV AHLLYDIVRKL DGA++ N GT++ +S G SNF LQ PE++FP Sbjct: 61 GEQEGATTVPAHLLYDIVRKLPDGAEVKLVL-NSEGTQMTVSAGRSNFRLQCLPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + F + + L L+ERT FA++TEE RYYLNGI+ H + L L AVATDG Sbjct: 120 ITAGELSHGFTMEAGALARLIERTQFAISTEETRYYLNGIYLHTIDADGTLMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236 HRLA AE+ + MP IIVPRK VGEI ++L+ D + V LSES+I I + Sbjct: 180 HRLARAEMTAPSGSEGMPGIIVPRKTVGEIQKLLADCEDDDEIAVDLSESKIRFKIGRVV 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 M+ +LIDG FP+YQ VIP +NDKEL ++ + AVDRVS +SS R +AVKL+L+ +L Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKELTLDRASFSSAVDRVSTISSERGRAVKLTLADSQLT 299 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +TV++PD G A E + V Y ++I FN +YLL++ +S +E +F L S Sbjct: 300 LTVNSPDAGTATEELAVGYESEDLEIGFNARYLLDVTSQLSG-----EEAMFVLADPGSP 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + YVLMPMR+ Sbjct: 355 TLIKD---------GGDTSTLYVLMPMRV 374 >gi|323462780|pdb|2XUR|A Chain A, The G157c Mutation In The Escherichia Coli Sliding Clamp Specifically Affects Initiation Of Replication gi|323462781|pdb|2XUR|B Chain B, The G157c Mutation In The Escherichia Coli Sliding Clamp Specifically Affects Initiation Of Replication Length = 373 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 8 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 67 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 68 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 124 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLN + F E+L+ VATDGH Sbjct: 125 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNCMLFETEGEELR--TVATDGH 182 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 183 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 241 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 242 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 301 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 302 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 356 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 357 EDA---------ASQSAAYVVMPMRL 373 >gi|30065009|ref|NP_839180.1| DNA polymerase III subunit beta [Shigella flexneri 2a str. 2457T] gi|56480410|ref|NP_709499.2| DNA polymerase III subunit beta [Shigella flexneri 2a str. 301] gi|110807609|ref|YP_691129.1| DNA polymerase III subunit beta [Shigella flexneri 5 str. 8401] gi|30043270|gb|AAP18991.1| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 2457T] gi|56383961|gb|AAN45206.2| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 301] gi|110617157|gb|ABF05824.1| DNA polymerase III, beta-subunit [Shigella flexneri 5 str. 8401] gi|281603072|gb|ADA76056.1| DNA polymerase III, beta-subunit [Shigella flexneri 2002017] gi|313647709|gb|EFS12157.1| DNA polymerase III, beta subunit [Shigella flexneri 2a str. 2457T] gi|332750522|gb|EGJ80931.1| DNA polymerase III, beta subunit [Shigella flexneri K-671] gi|332750693|gb|EGJ81101.1| DNA polymerase III, beta subunit [Shigella flexneri 4343-70] gi|332751746|gb|EGJ82144.1| DNA polymerase III, beta subunit [Shigella flexneri 2747-71] gi|332764072|gb|EGJ94309.1| DNA polymerase III, beta subunit [Shigella flexneri 2930-71] gi|332996041|gb|EGK15668.1| DNA polymerase III, beta subunit [Shigella flexneri VA-6] gi|332997108|gb|EGK16724.1| DNA polymerase III, beta subunit [Shigella flexneri K-218] gi|333013256|gb|EGK32629.1| DNA polymerase III, beta subunit [Shigella flexneri K-304] Length = 366 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|170748657|ref|YP_001754917.1| DNA polymerase III subunit beta [Methylobacterium radiotolerans JCM 2831] gi|170655179|gb|ACB24234.1| DNA polymerase III, beta subunit [Methylobacterium radiotolerans JCM 2831] Length = 373 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 170/388 (43%), Positives = 238/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+A L+++A+ +IE+T ++PA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRAEGSGLQLRATDLDIEVTESVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL DGAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VADAGATTVPAHVIYDIVRKLPDGAQVSLETGGESG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + FE+A++ LK L+E+T FA++TEE RYYLNGI+ H E + AVATDG Sbjct: 120 LAAGEMPHGFEIAAADLKRLIEKTQFAISTEETRYYLNGIYLHTLETENGPAMRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237 HRLA E+ MP +IVPRKAV EI ++L +V V LS ++I L L++ Sbjct: 180 HRLARVEIPAPQGSVGMPGVIVPRKAVAEIQKLLDDGGETVAVDLSPAKIRLRFAGGLTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP +NDK L V +AVDRVS +SS R +AVKL L+ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPANNDKRLTVERDAFAKAVDRVSTISSERGRAVKLGLAEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVNNPDSGSATEELDVDYEAAGLDIGFNARYLLDITAQLEG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++ A YVLMPMR+ Sbjct: 355 LIQDREGAP---------ALYVLMPMRV 373 >gi|222084599|ref|YP_002543128.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84] gi|221722047|gb|ACM25203.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84] Length = 372 Score = 396 bits (1017), Expect = e-108, Method: Composition-based stats. Identities = 187/387 (48%), Positives = 257/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A L++KA+ ++EIT A PA+ Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGANLDMKATDLDLEITEATPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N G + ++ G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEVL-LATNPDGGSMTVASGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH +E DLKL AVATDG Sbjct: 120 LTAGSFSHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESEGDLKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V + MP II+PRK VGE+ +++ S D V V +S+++I I S+ M+ Sbjct: 180 HRLARADVSAPSGSEGMPGIIIPRKTVGELQKLVDSPDVIVTVEVSDAKIRTTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP +NDKE+RV+C + QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTNNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALSDGQLLLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S D +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----DAAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|332997867|gb|EGK17475.1| DNA polymerase III, beta subunit [Shigella flexneri K-272] gi|333013662|gb|EGK33027.1| DNA polymerase III, beta subunit [Shigella flexneri K-227] Length = 366 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 HPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|16762488|ref|NP_458105.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. CT18] gi|29143976|ref|NP_807318.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56415710|ref|YP_152785.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62182325|ref|YP_218742.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|161505632|ref|YP_001572744.1| DNA polymerase III subunit beta [Salmonella enterica subsp. arizonae serovar 62:z4,z23:-- str. RSK2980] gi|161616955|ref|YP_001590920.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|167548873|ref|ZP_02342632.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|168233392|ref|ZP_02658450.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|168260378|ref|ZP_02682351.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|168464832|ref|ZP_02698724.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|168818303|ref|ZP_02830303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|194471413|ref|ZP_03077397.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|197251713|ref|YP_002148775.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197364638|ref|YP_002144275.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|198245644|ref|YP_002217787.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204928586|ref|ZP_03219785.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205354576|ref|YP_002228377.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|207859063|ref|YP_002245714.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|213648785|ref|ZP_03378838.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. J185] gi|213865135|ref|ZP_03387254.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. M223] gi|224585636|ref|YP_002639435.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|238913090|ref|ZP_04656927.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Tennessee str. CDC07-0191] gi|289826404|ref|ZP_06545516.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-3139] gi|25288590|pir||AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica subsp. enterica serovar Typhi (strain CT18) gi|16504793|emb|CAD03158.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhi] gi|29139612|gb|AAO71178.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhi str. Ty2] gi|56129967|gb|AAV79473.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. ATCC 9150] gi|62129958|gb|AAX67661.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp. enterica serovar Choleraesuis str. SC-B67] gi|160866979|gb|ABX23602.1| hypothetical protein SARI_03808 [Salmonella enterica subsp. arizonae serovar 62:z4,z23:--] gi|161366319|gb|ABX70087.1| hypothetical protein SPAB_04776 [Salmonella enterica subsp. enterica serovar Paratyphi B str. SPB7] gi|194457777|gb|EDX46616.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CVM29188] gi|195632425|gb|EDX50909.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL317] gi|197096115|emb|CAR61711.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Paratyphi A str. AKU_12601] gi|197215416|gb|ACH52813.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Agona str. SL483] gi|197940160|gb|ACH77493.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Dublin str. CT_02021853] gi|204322019|gb|EDZ07217.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Javiana str. GA_MM04042433] gi|205274357|emb|CAR39382.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Gallinarum str. 287/91] gi|205325570|gb|EDZ13409.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul str. SARA29] gi|205332539|gb|EDZ19303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Kentucky str. CDC 191] gi|205344390|gb|EDZ31154.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. HI_N05-537] gi|205350419|gb|EDZ37050.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Hadar str. RI_05P066] gi|206710866|emb|CAR35230.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Enteritidis str. P125109] gi|224470164|gb|ACN47994.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Paratyphi C strain RKS4594] gi|320088258|emb|CBY98020.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp. enterica serovar Weltevreden str. 2007-60-3289-1] gi|322617250|gb|EFY14155.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315996572] gi|322619062|gb|EFY15948.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-1] gi|322625129|gb|EFY21957.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-3] gi|322630180|gb|EFY26951.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 495297-4] gi|322634394|gb|EFY31128.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-1] gi|322635279|gb|EFY31994.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 515920-2] gi|322642897|gb|EFY39481.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 531954] gi|322647623|gb|EFY44110.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. NC_MB110209-0054] gi|322650571|gb|EFY46978.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. OH_2009072675] gi|322656403|gb|EFY52695.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. CASC_09SCPH15965] gi|322661583|gb|EFY57806.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 19N] gi|322661664|gb|EFY57883.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 81038-01] gi|322668222|gb|EFY64380.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MD_MDA09249507] gi|322672849|gb|EFY68957.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 414877] gi|322674970|gb|EFY71056.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 366867] gi|322683660|gb|EFY79673.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 413180] gi|322687736|gb|EFY83705.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 446600] gi|322716816|gb|EFZ08387.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Choleraesuis str. A50] gi|323192049|gb|EFZ77284.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609458-1] gi|323200531|gb|EFZ85609.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556150-1] gi|323204957|gb|EFZ89942.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 609460] gi|323206700|gb|EFZ91657.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 507440-20] gi|323211772|gb|EFZ96605.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 556152] gi|323218634|gb|EGA03341.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB101509-0077] gi|323220035|gb|EGA04505.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB102109-0047] gi|323224805|gb|EGA09070.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB110209-0055] gi|323232486|gb|EGA16588.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. MB111609-0052] gi|323235261|gb|EGA19346.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009083312] gi|323241049|gb|EGA25086.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 2009085258] gi|323241401|gb|EGA25433.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. 315731156] gi|323248632|gb|EGA32562.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2009159199] gi|323252069|gb|EGA35929.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008282] gi|323258627|gb|EGA42290.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008283] gi|323262342|gb|EGA45900.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008284] gi|323268178|gb|EGA51654.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008285] gi|323270592|gb|EGA54037.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Montevideo str. IA_2010008287] gi|326625573|gb|EGE31918.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Dublin str. 3246] gi|326629712|gb|EGE36055.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Gallinarum str. 9] Length = 366 Score = 395 bits (1016), Expect = e-108, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|271498580|ref|YP_003331605.1| DNA polymerase III subunit beta [Dickeya dadantii Ech586] gi|270342135|gb|ACZ74900.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech586] Length = 366 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+IS E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L S SSV + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EEVRMLLTDSVSSVQL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDAASQA---------AAYVVMPMRL 366 >gi|163757766|ref|ZP_02164855.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43] gi|162285268|gb|EDQ35550.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43] Length = 372 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 181/387 (46%), Positives = 253/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLL+A L++KA+ ++EIT A PA Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGATLDMKATDLDLEITEATPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS TV AHLLYDIVRKL DG+++ N G + ++ G S F LQ PES+FP Sbjct: 61 IEQAGSTTVPAHLLYDIVRKLSDGSEV-MLATNPDGASMTVASGRSKFTLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + ++F L ++ LK L++RT FA++TEE RYYLNGIF H +E LKL AVATDG Sbjct: 120 LTAGAFSHTFRLPATELKMLIDRTQFAISTEETRYYLNGIFVHTIESEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGEI +++ + D +V V +S+++I I S+ M+ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGEIQKLVDNPDLTVTVEVSDAKIRFTIGSVVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL V+C QAVDRVS +SS R +AVKL+++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKELTVDCQTFAQAVDRVSTISSERGRAVKLAIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ P++I FN KYLL+I + +S + VF L S Sbjct: 300 VNNPDSGSATEELAVGYDRDPIEIGFNAKYLLDITNQLSGTD-----AVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372 >gi|260595831|ref|YP_003208402.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032] gi|260215008|emb|CBA26670.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032] Length = 366 Score = 395 bits (1015), Expect = e-108, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + +S G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F EDL+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + + S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPVGQPLPN-HSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASSSAAYVVMPMRL 366 >gi|75674201|ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter winogradskyi Nb-255] gi|74419071|gb|ABA03270.1| DNA polymerase III, beta subunit [Nitrobacter winogradskyi Nb-255] Length = 372 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 162/387 (41%), Positives = 236/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDI+RKL DGAQI + + + I G S F LQ+ PE++FP Sbjct: 61 TGTVGSTTVPAHMFYDIIRKLPDGAQIVLEGDGDRSV-LTIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E +SF LA++ LK L++RT FA++TEE RYYLNGI+ H + L VATDG Sbjct: 120 LAAGEMTHSFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGTANNATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +I+PRK VGE+ R++ ++ + + LS+ +I + ++ ++ Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTLGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D A YVLMPMR+ Sbjct: 355 VHDRD---------SRGALYVLMPMRV 372 >gi|16767122|ref|NP_462737.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|167992431|ref|ZP_02573529.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|168242057|ref|ZP_02666989.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|194444384|ref|YP_002043087.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194449346|ref|YP_002047870.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|200387477|ref|ZP_03214089.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|3915668|sp|P26464|DPO3B_SALTY RecName: Full=DNA polymerase III subunit beta gi|2653647|gb|AAB87631.1| DNA polymerase III beta clamp subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|16422411|gb|AAL22696.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. LT2] gi|194403047|gb|ACF63269.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Newport str. SL254] gi|194407650|gb|ACF67869.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL476] gi|199604575|gb|EDZ03120.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Virchow str. SL491] gi|205329442|gb|EDZ16206.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar 4,[5],12:i:- str. CVM23701] gi|205338833|gb|EDZ25597.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SL486] gi|261248978|emb|CBG26835.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. D23580] gi|267996123|gb|ACY91008.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 14028S] gi|301160370|emb|CBW19895.1| DNA polymerase III beta-subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. SL1344] gi|312914967|dbj|BAJ38941.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. T000240] gi|321225555|gb|EFX50610.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium str. TN061786] gi|323132198|gb|ADX19628.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. 4/74] gi|332990687|gb|AEF09670.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhimurium str. UK-1] Length = 366 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|251787654|ref|YP_003002375.1| DNA polymerase III subunit beta [Dickeya zeae Ech1591] gi|247536275|gb|ACT04896.1| DNA polymerase III, beta subunit [Dickeya zeae Ech1591] Length = 366 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L S SSV + Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EEVRMLLTDSVSSVQL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDAASQA---------AAYVVMPMRL 366 >gi|307133246|ref|YP_003885262.1| DNA polymerase III, subunit beta [Dickeya dadantii 3937] gi|306530775|gb|ADN00706.1| DNA polymerase III, beta subunit [Dickeya dadantii 3937] Length = 366 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ ++G L + + E+E+ + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L DGA+IS E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F + E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C LRQA R +I+S+ + + V+L L+ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDAASQA---------AAYVVMPMRL 366 >gi|91974484|ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB5] gi|91680940|gb|ABE37242.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB5] Length = 372 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 238/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+ +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PES+FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E +SF LA+S +K L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ A + MP +IVPRK VGE+ R++ D+ + + LS +I I ++ ++ Sbjct: 180 HRLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D NA YVLMPMR+ Sbjct: 355 IQDRD---------TKNALYVLMPMRV 372 >gi|168235477|ref|ZP_02660535.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] gi|194738233|ref|YP_002116781.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|194713735|gb|ACF92956.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. CVM19633] gi|197291529|gb|EDY30881.1| DNA polymerase III, beta subunit [Salmonella enterica subsp. enterica serovar Schwarzengrund str. SL480] Length = 366 Score = 394 bits (1014), Expect = e-108, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYGGMEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|325291735|ref|YP_004277599.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3] gi|325059588|gb|ADY63279.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3] Length = 378 Score = 394 bits (1014), Expect = e-107, Method: Composition-based stats. Identities = 178/387 (45%), Positives = 259/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PA Sbjct: 7 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLY+IVRKL DG+++ N G+ + ++ G S F LQ PE++FP Sbjct: 67 VEQAGATTVPAHLLYEIVRKLPDGSEVL-LATNPDGSTMTVASGRSKFSLQCLPETDFPD 125 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH + DLKL AVATDG Sbjct: 126 LTAGTFSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDG 185 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ ++ Sbjct: 186 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELDVTVEVSDAKIRLTIGSVVLT 245 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+C +AVDRVS +SS R +AVKL+L++ +L +T Sbjct: 246 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTNGQLTLT 305 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S ++ +F L + S Sbjct: 306 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 360 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 361 VRDTAGD---------DALYVLMPMRV 378 >gi|188579289|ref|YP_001922734.1| DNA polymerase III subunit beta [Methylobacterium populi BJ001] gi|179342787|gb|ACB78199.1| DNA polymerase III, beta subunit [Methylobacterium populi BJ001] Length = 373 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 173/388 (44%), Positives = 238/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+ D L++KA+ +IE+T + A Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGDNGLQLKATDLDIEVTETVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 E +SF + +S LK L+E+T FA++TEE RYYLNGI+FH E LKL AVATDG Sbjct: 120 LAAGELPHSFSIPASELKQLIEKTQFAISTEETRYYLNGIYFHTVEVEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237 HRLA E + MP IIVPRKAV EI +++ SV+V LS ++I L +++ Sbjct: 180 HRLARVETEAPEDSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL+++ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVAEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 LIQDRDGAP---------ALYVLMPMRV 373 >gi|283787599|ref|YP_003367464.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168] gi|282951053|emb|CBG90731.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168] Length = 366 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QAHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ + V + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLHVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|163849459|ref|YP_001637502.1| DNA polymerase III subunit beta [Methylobacterium extorquens PA1] gi|163661064|gb|ABY28431.1| DNA polymerase III, beta subunit [Methylobacterium extorquens PA1] Length = 373 Score = 394 bits (1013), Expect = e-107, Method: Composition-based stats. Identities = 173/388 (44%), Positives = 238/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L+ LGH R++ER+NTIP+ +VLL+ + L++KA+ +IE+T + A Sbjct: 1 MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH E LKL AVATDG Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237 HRLA E D MP IIVPRKAV EI +++ SV+V LS ++I L + + Sbjct: 180 HRLARVETDAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL++S +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 LIQDRDGAP---------ALYVLMPMRV 373 >gi|152972608|ref|YP_001337754.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238897211|ref|YP_002921959.1| DNA polymerase III subunit beta [Klebsiella pneumoniae NTUH-K2044] gi|262040465|ref|ZP_06013708.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|330005214|ref|ZP_08305173.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3] gi|150957457|gb|ABR79487.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp. pneumoniae MGH 78578] gi|238549541|dbj|BAH65892.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp. pneumoniae NTUH-K2044] gi|259042218|gb|EEW43246.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis ATCC 13884] gi|328536346|gb|EGF62708.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3] Length = 366 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPN-HSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|225626553|ref|ZP_03784592.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo] gi|225618210|gb|EEH15253.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo] Length = 397 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397 >gi|283836134|ref|ZP_06355875.1| hypothetical protein CIT292_10555 [Citrobacter youngae ATCC 29220] gi|291068323|gb|EFE06432.1| DNA polymerase III, beta subunit [Citrobacter youngae ATCC 29220] Length = 366 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPV-GQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRIMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|17988225|ref|NP_540859.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. 16M] gi|23500918|ref|NP_697045.1| DNA polymerase III subunit beta [Brucella suis 1330] gi|163842279|ref|YP_001626683.1| DNA polymerase III subunit beta [Brucella suis ATCC 23445] gi|225851548|ref|YP_002731781.1| DNA polymerase III subunit beta [Brucella melitensis ATCC 23457] gi|256368467|ref|YP_003105973.1| DNA polymerase III subunit beta [Brucella microti CCM 4915] gi|294851412|ref|ZP_06792085.1| DNA polymerase III [Brucella sp. NVSL 07-0026] gi|17983990|gb|AAL53123.1| DNA polymerase iii, beta chain [Brucella melitensis bv. 1 str. 16M] gi|23346771|gb|AAN28960.1| DNA polymerase III, beta subunit [Brucella suis 1330] gi|163673002|gb|ABY37113.1| DNA polymerase III, beta subunit [Brucella suis ATCC 23445] gi|225639913|gb|ACN99826.1| DNA polymerase III, beta subunit [Brucella melitensis ATCC 23457] gi|255998625|gb|ACU47024.1| DNA polymerase III subunit beta [Brucella microti CCM 4915] gi|294820001|gb|EFG37000.1| DNA polymerase III [Brucella sp. NVSL 07-0026] Length = 397 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397 >gi|154250460|ref|YP_001411284.1| DNA polymerase III subunit beta [Parvibaculum lavamentivorans DS-1] gi|154154410|gb|ABS61627.1| DNA polymerase III, beta subunit [Parvibaculum lavamentivorans DS-1] Length = 372 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 156/387 (40%), Positives = 229/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ER +L+ L H ++ER+NTIP+ +VL++A DG L + A+ +IE+ AI A Sbjct: 1 MKITIERGALLKSLNHVQSVVERRNTIPILSNVLIKAEDGQLSLTATDLDIEVVEAIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T SAH LYDIVRKL +GAQ+ + G + ++ G S F LQS P+ +FP Sbjct: 61 VAQPGATTASAHTLYDIVRKLPEGAQVELSTGADEG-RLQLTAGRSRFALQSLPQEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + FEL + ++ L+++T FA++ EE RYYLNGI+FH + + L AVATDG Sbjct: 120 MAAGSLPHRFELPAEAMRRLIDKTRFAISMEETRYYLNGIYFHAVDGPKQKSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A MP +IVPRK V E+ ++L ++ V +SE++I + ++ Sbjct: 180 HRLAQVDHDLPEGAAGMPGVIVPRKTVLELQKLLEGNSGALSVGVSETKIRFEFGGIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L+V+ +AVDRVS +S+ + +AVKL++ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPVGNDKMLQVDGKRFAEAVDRVSTISTEKSRAVKLNIEEGKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E ++V Y+ ++I FN +YLL+I + E F S S Sbjct: 300 VTNPDSGSATEELSVSYSSPAIEIGFNARYLLDITGQLDGA-----EASFAFADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + A YVLMPMR+ Sbjct: 355 VRDSEDSM---------AVYVLMPMRV 372 >gi|62288993|ref|YP_220786.1| DNA polymerase III subunit beta [Brucella abortus bv. 1 str. 9-941] gi|82698934|ref|YP_413508.1| DNA polymerase III subunit beta [Brucella melitensis biovar Abortus 2308] gi|237814483|ref|ZP_04593481.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A] gi|62195125|gb|AAX73425.1| DnaN, DNA polymerase III, beta subunit [Brucella abortus bv. 1 str. 9-941] gi|82615035|emb|CAJ09958.1| DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella melitensis biovar Abortus 2308] gi|237789320|gb|EEP63530.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A] Length = 397 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397 >gi|218528085|ref|YP_002418901.1| DNA polymerase III subunit beta [Methylobacterium chloromethanicum CM4] gi|240136785|ref|YP_002961252.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1] gi|254558655|ref|YP_003065750.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4] gi|218520388|gb|ACK80973.1| DNA polymerase III, beta subunit [Methylobacterium chloromethanicum CM4] gi|240006749|gb|ACS37975.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1] gi|254265933|emb|CAX21682.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4] Length = 373 Score = 394 bits (1012), Expect = e-107, Method: Composition-based stats. Identities = 172/388 (44%), Positives = 238/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L+ LGH R++ER+NTIP+ +VLL+ + L++KA+ +IE+T + A Sbjct: 1 MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S E G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH E LKL AVATDG Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237 HRLA E + MP IIVPRKAV EI +++ SV+V LS ++I L + + Sbjct: 180 HRLARVETEAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL++S +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V NPD G A E ++V Y +DI FN +YLL+I + D +F+L S Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D A YVLMPMR+ Sbjct: 355 LIQDRDGAP---------ALYVLMPMRV 373 >gi|150398727|ref|YP_001329194.1| DNA polymerase III subunit beta [Sinorhizobium medicae WSM419] gi|150030242|gb|ABR62359.1| DNA polymerase III, beta subunit [Sinorhizobium medicae WSM419] Length = 372 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 182/387 (47%), Positives = 254/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+++ LE+KA+ ++EIT A A Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATQAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ N GT + ++ G S F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGSEVL-LATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF L ++ LK L++RT FA++TEE RYYLNGIF H + +LKL AVATDG Sbjct: 120 LTAGTFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+V+ + MP II+PRK V E+ ++L + D V V +S+++I L I S+ M+ Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDNPDVVVTVEVSDAKIRLTIGSIVMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP SNDKELRV+C + QAVDRVS +SS R +AVKL+L+ ++ +T Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALTDGQMTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN KYLL+I ++ E VF L S Sbjct: 300 VNNPDSGSATEEVPVGYESDPLEIGFNAKYLLDITAQLTGS-----EAVFLLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372 >gi|237729023|ref|ZP_04559504.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2] gi|226909645|gb|EEH95563.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2] Length = 366 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPV-GQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|304398067|ref|ZP_07379942.1| DNA polymerase III, beta subunit [Pantoea sp. aB] gi|304354353|gb|EFM18725.1| DNA polymerase III, beta subunit [Pantoea sp. aB] Length = 366 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 133/386 (34%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS TV A DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 61 QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L D+ ++V + S I ++ + Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVRIGGSNIRAHVGDYIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDVASPA---------AAYVVMPMRL 366 >gi|159184247|ref|NP_353331.2| DNA polymerase III subunit beta [Agrobacterium tumefaciens str. C58] gi|159139574|gb|AAK86116.2| DNA polymerase III, beta chain [Agrobacterium tumefaciens str. C58] Length = 372 Score = 393 bits (1011), Expect = e-107, Method: Composition-based stats. Identities = 177/387 (45%), Positives = 258/387 (66%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PA Sbjct: 1 MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLY+IVRKL DG+++ N G+ + ++ G S F LQ PE++FP Sbjct: 61 VEQAGATTVPAHLLYEIVRKLPDGSEVL-LATNPDGSSMTVASGRSKFSLQCLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH + +LKL AVATDG Sbjct: 120 LTAGTFSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + + V V +S+++I L I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+C +AVDRVS +SS R +AVKL+L+ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S ++ +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YVLMPMR+ Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372 >gi|49474937|ref|YP_032978.1| DNA polymerase III subunit beta [Bartonella henselae str. Houston-1] gi|49237742|emb|CAF26934.1| DNA polymerase III, beta chain [Bartonella henselae str. Houston-1] Length = 373 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 166/387 (42%), Positives = 252/387 (65%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV+R+ +L+ LG R++ER+NT+P+ +VL+ A+ +++KA+ ++E+T + A+ Sbjct: 1 MRITVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFVAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ITV AHLLYDIVRKL DG++I + + +++ G +NF LQ P+ +FP Sbjct: 61 IKQEGAITVPAHLLYDIVRKLPDGSEIVLSVDMNQASTMSVVSGCANFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ ++ LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSTSGLKHLLDCTQFAISTEETRYYLNGIYFHVIDDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + + MP +IVPRK VGE+ ++LS + D V V LSE++I +I S+ + Sbjct: 181 RLAQVDMEAPSGVEGMPGVIVPRKTVGELQKLLSEEVDEDVCVELSETKIRFSIGSVVFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN + AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNRQDFSSAVDRVSTISSDRGRAVKLTIEQGQLKLI 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A + + V Y P++I FN +YLL+I +SS DE+VF L + + Sbjct: 301 VHNPDSGSAEDQLAVTYTSDPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + +A YVLMP+R+ Sbjct: 356 IRN---------NGVADALYVLMPIRV 373 >gi|206578911|ref|YP_002235887.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342] gi|288932894|ref|YP_003436953.1| DNA polymerase III subunit beta [Klebsiella variicola At-22] gi|290511690|ref|ZP_06551058.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55] gi|206567969|gb|ACI09745.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342] gi|288887623|gb|ADC55941.1| DNA polymerase III, beta subunit [Klebsiella variicola At-22] gi|289775480|gb|EFD83480.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55] Length = 366 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLPN-HSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|27375940|ref|NP_767469.1| DNA polymerase III subunit beta [Bradyrhizobium japonicum USDA 110] gi|27349078|dbj|BAC46094.1| DNA polymerase III beta chain [Bradyrhizobium japonicum USDA 110] Length = 372 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 165/387 (42%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + + + I G S F LQ+ PE++FP Sbjct: 61 TATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + +SF LA+ +K L++RT FA++TEE RYYLNGI+ H + L VATDG Sbjct: 120 LAAGDMSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ MP +IVPRK VGE+ R++ ++ + + LS+++I I ++ ++ Sbjct: 180 HRLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKEL V+ + AVDRVS +SS R +AVKLSLS KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + RL S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----ATLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +D S A YVLMPMR+ Sbjct: 355 VQDRDDKS---------ALYVLMPMRV 372 >gi|118590459|ref|ZP_01547861.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] gi|118436922|gb|EAV43561.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] Length = 372 Score = 393 bits (1010), Expect = e-107, Method: Composition-based stats. Identities = 174/387 (44%), Positives = 253/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A+ G + +KA+ ++EI ++PA Sbjct: 1 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGAINLKATDLDLEIVESVPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +++ G+ TV AH+ YDIVRKL +G+Q+ ++ T + I G S F LQ PE++FP Sbjct: 61 IEMPGATTVPAHMFYDIVRKLPEGSQVVLETTSDNAT-LEIRAGRSKFTLQMLPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 ++ +SF L + ++ L++ T FA++TEE RYYLNGI+ H L+ AVATDG Sbjct: 120 LTAGDFSHSFSLTGADIRKLIDATQFAISTEETRYYLNGIYLHTVDAGSGLQFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV + A MP IIVPRK VGEI ++L S ++SV+V LS+++I L S+ ++ Sbjct: 180 HRLAQAEVPAPSGSAGMPGIIVPRKTVGEIQKLLESPEASVQVELSDTKIRLTTGSVILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKE+RV+ ++AVDRVS +SS R +AVKLSL+ L +T Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLTEGHLVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ P+DI FN +YLL+I + +SS D +FRL S S Sbjct: 300 VNNPDSGSATEELAVEYDAEPLDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D + +VLMPMR+ Sbjct: 355 IQDNTVD---------DCLFVLMPMRV 372 >gi|148560207|ref|YP_001258051.1| DNA polymerase III subunit beta [Brucella ovis ATCC 25840] gi|148371464|gb|ABQ61443.1| DNA polymerase III, beta subunit [Brucella ovis ATCC 25840] Length = 397 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 169/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNSPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397 >gi|110632364|ref|YP_672572.1| DNA polymerase III subunit beta [Mesorhizobium sp. BNC1] gi|110283348|gb|ABG61407.1| DNA polymerase III, beta subunit [Chelativorans sp. BNC1] Length = 372 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 178/387 (45%), Positives = 252/387 (65%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ERS++L+ LGH R++ER+NTIP+ +VLL A+ LE+KA+ ++E+T A PAS Sbjct: 1 MRVVLERSNLLKSLGHVHRVVERRNTIPILSNVLLSADGASLEMKATDLDLEMTEAAPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ K +E G +++ G S F LQ P+++FP+ Sbjct: 61 VEQGGATTVPAHLLYDIVRKLPDGAEV-MLKVDENGQTMSVISGRSTFRLQCLPKADFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 ++ + F + S+VL++LVE+T FA++TEE RYYLNGIF H E D LKL AVATDG Sbjct: 120 LTAGQFSHIFRMESAVLRSLVEKTQFAISTEETRYYLNGIFLHTLESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ A MP IIVPRK VGE+ +++ D +V V LS+++I I S+ ++ Sbjct: 180 HRLARAEIEAPAGSEGMPGIIVPRKTVGELQKLVDDPDVAVTVELSDTKIRFTIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL ++ + AVDRVS +SS R +AVKLS+S ++ T Sbjct: 240 SKLIDGTFPDYQRVIPVGNDKELLIDRQSFSAAVDRVSTVSSERGRAVKLSISDGQVTFT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + YN P++I FN +YLL++ +S E F L + S Sbjct: 300 VNNPDSGSATEEIPAGYNADPIEIGFNARYLLDVAAQLSGS-----EAKFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + YVLMPMR+ Sbjct: 355 IQDTSDERV---------LYVLMPMRV 372 >gi|161617993|ref|YP_001591880.1| DNA polymerase III subunit beta [Brucella canis ATCC 23365] gi|161334804|gb|ABX61109.1| DNA polymerase III, beta subunit [Brucella canis ATCC 23365] Length = 397 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 169/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDI+RKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397 >gi|257097208|pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant gi|257097209|pdb|3F1V|B Chain B, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant Length = 366 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA YYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAAAAAAYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|157144343|ref|YP_001451662.1| DNA polymerase III subunit beta [Citrobacter koseri ATCC BAA-895] gi|157081548|gb|ABV11226.1| hypothetical protein CKO_00047 [Citrobacter koseri ATCC BAA-895] Length = 366 Score = 393 bits (1009), Expect = e-107, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYGGTEMEIGFNVSYVLDVLNALKC-----ETVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|297247410|ref|ZP_06931128.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str. B3196] gi|297174579|gb|EFH33926.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str. B3196] Length = 397 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 26 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 86 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 145 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397 >gi|190889986|ref|YP_001976528.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652] gi|190695265|gb|ACE89350.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652] Length = 372 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 184/387 (47%), Positives = 262/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G+ + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTDGGS-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH ++ +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|86355975|ref|YP_467867.1| DNA polymerase III subunit beta [Rhizobium etli CFN 42] gi|86280077|gb|ABC89140.1| DNA polymerase III, beta chain protein [Rhizobium etli CFN 42] Length = 372 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 185/387 (47%), Positives = 260/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PA+ Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ E G+ + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGAEVLLATSTEGGS-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH + +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDSMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|327192029|gb|EGE59010.1| DNA polymerase III subunit beta [Rhizobium etli CNPAF512] Length = 372 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 184/387 (47%), Positives = 260/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G+ + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTDGGS-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH + +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|218509914|ref|ZP_03507792.1| DNA polymerase III subunit beta [Rhizobium etli Brasil 5] Length = 372 Score = 392 bits (1008), Expect = e-107, Method: Composition-based stats. Identities = 184/387 (47%), Positives = 261/387 (67%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ERS++L+ L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PAS Sbjct: 1 MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DG+++ + G+ + + G S F LQ PES+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTDGGS-MTVQSGRSKFSLQCLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH ++ +LKL AVATDG Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA A+VD + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKE+RV+CT QAVDRVS +SS R +AVKL+LS +L +T Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ M+I FN KYLL+I +S +E +F L + S Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D +A YVLMPMR+ Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372 >gi|170738369|ref|YP_001767024.1| DNA polymerase III subunit beta [Methylobacterium sp. 4-46] gi|168192643|gb|ACA14590.1| DNA polymerase III, beta subunit [Methylobacterium sp. 4-46] Length = 373 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 170/388 (43%), Positives = 239/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+++ L+++A+ +IE+T IPA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLRATDLDIEVTETIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL DG Q+S E G ++ I G S F L + PE++FP Sbjct: 61 VVDGGATTVPAHVIYDIVRKLPDGVQVSLETTGETG-QMQIRSGRSRFMLGALPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + F+L ++ LK L+++T FA++TEE RYYLNGIFFH E L+L AVATDG Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIETEAGLRLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237 HRLA E+ MP IIVPRKAV EI +++ SV V LS +++ +++ Sbjct: 180 HRLARVEMPAPEGSRGMPGIIVPRKAVAEIQKLVEDGGDSVGVELSPAKVRFTFSSGVTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL++ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVEREQFAKAVDRVSTISSERGRAVKLAVGGGRLSL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+NPD G A E ++V Y P+DI FN +YLL+I + D +F+L S Sbjct: 300 SVNNPDSGSATEELDVDYEAAPLDIGFNARYLLDITAQLDG-----DSALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K+ A YVLMPMR+ Sbjct: 355 LIQDKEGAP---------ALYVLMPMRV 373 >gi|292490135|ref|YP_003533030.1| DNA polymerase III subunit beta [Erwinia amylovora CFBP1430] gi|292901139|ref|YP_003540508.1| DNA polymerase III subunit beta [Erwinia amylovora ATCC 49946] gi|291200987|emb|CBJ48126.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC 49946] gi|291555577|emb|CBA24171.1| DNA polymerase III, beta-subunit [Erwinia amylovora CFBP1430] gi|312174328|emb|CBX82581.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC BAA-2158] Length = 366 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + A Sbjct: 1 MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P S+FP Sbjct: 61 QDHQPGATTVPARKFFDICRGLPEGAEIAVILE---GERMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L + DS ++V + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELVRLLDAGDSLLQVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|298290590|ref|YP_003692529.1| DNA polymerase III subunit beta [Starkeya novella DSM 506] gi|296927101|gb|ADH87910.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506] Length = 371 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 164/386 (42%), Positives = 232/386 (60%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+++L+ L H R++ER+NTIP+ +VL++ + L ++A+ +IEI I A Sbjct: 1 MKVTVERAELLKSLAHVHRVVERRNTIPILANVLMRTDARGLALRATDLDIEIVETIAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH +YDIVRKL +GAQ+ + GT + + G S F LQ+ PE+EFP Sbjct: 61 VGQEGATTVPAHTIYDIVRKLPEGAQVQIETSGDRGT-LTVRAGRSRFALQTLPETEFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179 E + F L + LK LV++T FA++TEE RYYLNGI+ H+ + L AVATDGH Sbjct: 120 LAAGEMTHRFTLPAGELKRLVDKTQFAISTEETRYYLNGIYLHVADASGPVLRAVATDGH 179 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA A+ A MP +IVPRKAV EI R+ ++ V V LS ++I ++++ + ++ Sbjct: 180 RLAQAQTTAPAGATGMPGVIVPRKAVAEIQRLAEDAEAEVTVELSTAKIRVSLDRVVLTS 239 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP NDK L V+ + AVDRVS ++S R +AVKLS+ KL ++V Sbjct: 240 KLIDGTFPDYGRVIPLGNDKTLVVDKADFASAVDRVSTVASERGRAVKLSIGDGKLTLSV 299 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NPD G A E + V Y P+DI FN +YLL+I I +L S + Sbjct: 300 TNPDSGSATEEIEVEYAAEPIDIGFNSRYLLDITSQIEG-----GTAELKLADPGSPTLV 354 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + K A YVLMPMR+ Sbjct: 355 QDPE---------KRGALYVLMPMRV 371 >gi|259910294|ref|YP_002650650.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96] gi|224965916|emb|CAX57449.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96] gi|283480418|emb|CAY76334.1| DNA polymerase III, beta-subunit [Erwinia pyrifoliae DSM 12163] gi|310765873|gb|ADP10823.1| DNA polymerase III subunit beta [Erwinia sp. Ejp617] Length = 366 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 1 MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A +DI R L +GA+I+ E G + + G S F L + P S+FP Sbjct: 61 HDHQPGATTVPARKFFDICRGLPEGAEIAVILE---GERMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L DS +++ + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELVRLLDGGDSLLQIQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|163867416|ref|YP_001608613.1| DNA polymerase III subunit beta [Bartonella tribocorum CIP 105476] gi|161017060|emb|CAK00618.1| DNA polymerase III, beta chain [Bartonella tribocorum CIP 105476] Length = 373 Score = 392 bits (1007), Expect = e-107, Method: Composition-based stats. Identities = 164/387 (42%), Positives = 253/387 (65%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV+R+ L+ LG R++ER+NT+P+ +VL+ A +G +++K + ++E+T + + Sbjct: 1 MRITVDRNQFLKSLGRVHRVVERRNTVPILSNVLIDAENGHVQLKTTDLDLEVTESFTVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDI+RKL DG +I + + +++ G +F LQ P+++FP Sbjct: 61 VEHAGATTVPAHLLYDIIRKLPDGNEIVLSVDENQASTMSVVSGCVHFQLQCLPKADFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ +D LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSASGLKHLLDCTQFAISTEETRYYLNGIYFHVINDDVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA E++ + + MP +IVPRKAVGE+ ++LS + D V + LSE++I ++ S+ + Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDGDVCIELSETKIRFSVGSVIFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL VN + AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELVVNRQDFSSAVDRVSTISSDRGRAVKLTIEHGQLRLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A + ++V Y+ P++I FN +YLL+I +SS DE+VF L + + Sbjct: 301 VNSPDSGSAEDQLSVTYSSEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + YVLMP+R+ Sbjct: 356 IRDNDD---------ADVLYVLMPIRV 373 >gi|220920056|ref|YP_002495357.1| DNA polymerase III subunit beta [Methylobacterium nodulans ORS 2060] gi|219944662|gb|ACL55054.1| DNA polymerase III, beta subunit [Methylobacterium nodulans ORS 2060] Length = 373 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 169/388 (43%), Positives = 239/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+++ L++KA+ +IE+T IPA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLKATDLDIEVTETIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S + G ++ I G S F L + PE++FP Sbjct: 61 VADGGATTVPAHVIYDIVRKLPEGAQVSLETTGDTG-QMLIRSGRSRFTLGALPETDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E + F+L ++ LK L+++T FA++TEE RYYLNGIFFH E +KL AVATDG Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIEAEGGVKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237 HRLA E+ MP IIVPRKAV EI +++ SV V +S +++ + + Sbjct: 180 HRLARVEMPAPEGSHGMPGIIVPRKAVAEIQKLVEDGGDSVGVEISSAKVRFTFSTGVML 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL+++ +L + Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVERDQFAKAVDRVSTISSERGRAVKLAVAGGRLSL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+NPD G A E ++ Y P+DI FN +YLL+I + D +F+L S Sbjct: 300 SVNNPDSGSATEELDADYEAAPLDIGFNARYLLDITAQLDG-----DTALFKLADPGSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ KD A YVLMPMR+ Sbjct: 355 LIQDKDGAP---------ALYVLMPMRV 373 >gi|317046240|ref|YP_004113888.1| DNA polymerase III subunit beta [Pantoea sp. At-9b] gi|316947857|gb|ADU67332.1| DNA polymerase III, beta subunit [Pantoea sp. At-9b] Length = 366 Score = 391 bits (1006), Expect = e-107, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ N+G L + + E+E+ + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 61 QPHEPGATTVPARKFLDICRGLPDGAEITLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L ++ ++V + S I ++ + Sbjct: 176 RLAVCSMPI-GQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V++ ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVSYNGSELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDVASPA---------AAYVVMPMRL 366 >gi|293393722|ref|ZP_06638030.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera DSM 4582] gi|291423766|gb|EFE96987.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera DSM 4582] Length = 366 Score = 391 bits (1005), Expect = e-107, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEITVQLD---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPIGQQLP-SHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVIYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 ED---------GASKSAAYVVMPMRL 366 >gi|265983182|ref|ZP_06095917.1| DNA polymerase III subunit beta [Brucella sp. 83/13] gi|264661774|gb|EEZ32035.1| DNA polymerase III subunit beta [Brucella sp. 83/13] Length = 376 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|254718226|ref|ZP_05180037.1| DNA polymerase III subunit beta [Brucella sp. 83/13] gi|306839966|ref|ZP_07472760.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653] gi|306404930|gb|EFM61215.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653] Length = 372 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372 >gi|322830735|ref|YP_004210762.1| DNA polymerase III, subunit beta [Rahnella sp. Y9602] gi|321165936|gb|ADW71635.1| DNA polymerase III, beta subunit [Rahnella sp. Y9602] Length = 366 Score = 391 bits (1005), Expect = e-106, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTDGALSLTGTDLEMEMVAKVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+IS + G + + G S F L + P ++FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEISVALD---GDRMLVKSGRSRFSLSTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+++++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTTLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLQAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVGYEGTEMEIGFNVSYVLDVLNALKC-----EDVNLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|254502919|ref|ZP_05115070.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11] gi|222438990|gb|EEE45669.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11] Length = 375 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 165/387 (42%), Positives = 250/387 (64%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A+ G L +KA+ ++EI +PA Sbjct: 4 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGALNLKATDLDLEIVETVPAM 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +++ G+ TV AH+ +DIVRKL +G+Q+ + T + I G S F LQ PE++FP Sbjct: 64 IEMPGATTVPAHMFFDIVRKLPEGSQVVLETTGDDTT-LEIRAGRSKFTLQMLPETDFPD 122 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 ++ + F L++S ++ L++ T FA++TEE RYYLNGI+ H + + AVATDG Sbjct: 123 LTAGDFSHGFTLSASDIRKLIDTTQFAISTEETRYYLNGIYLHTVDAANGQQFRAVATDG 182 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV + + MP IIVPRK VGEI ++L + ++ V++ LS+++I + +++ ++ Sbjct: 183 HRLAQAEVSAPSGSSGMPGIIVPRKTVGEIQKLLENPEADVQIELSDTKIRITTDTVVLT 242 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKE+RV+ ++AVDRVS +SS R +AVKL+L +L +T Sbjct: 243 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLALGDGRLVLT 302 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y P++I FN +YLL+I + +SS D +FRL S S Sbjct: 303 VNNPDSGSATEELAVEYESDPLEIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 357 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D + +VLMPMR+ Sbjct: 358 IQDNTVD---------DCLFVLMPMRV 375 >gi|261221233|ref|ZP_05935514.1| DNA polymerase III subunit beta [Brucella ceti B1/94] gi|261759118|ref|ZP_06002827.1| DNA polymerase subunit III [Brucella sp. F5/99] gi|265997194|ref|ZP_06109751.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1] gi|260919817|gb|EEX86470.1| DNA polymerase III subunit beta [Brucella ceti B1/94] gi|261739102|gb|EEY27098.1| DNA polymerase subunit III [Brucella sp. F5/99] gi|262551662|gb|EEZ07652.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1] Length = 376 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|308188764|ref|YP_003932895.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1] gi|308059274|gb|ADO11446.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1] Length = 384 Score = 391 bits (1004), Expect = e-106, Method: Composition-based stats. Identities = 132/386 (34%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + Sbjct: 19 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 78 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS TV A DI R L DGA+I+ E G + + G S F L + P S+FP Sbjct: 79 QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 135 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 136 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 193 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L ++ ++V + S I ++ + Sbjct: 194 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGENPLQVQIGGSNIRAHVGDYIFTS 252 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 253 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 312 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN Y+L++++ + + V L S SSV I Sbjct: 313 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 367 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 368 EDVASPA---------AAYVVMPMRL 384 >gi|260563085|ref|ZP_05833571.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M] gi|261218004|ref|ZP_05932285.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1] gi|261314778|ref|ZP_05953975.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10] gi|261316661|ref|ZP_05955858.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94] gi|261321146|ref|ZP_05960343.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1] gi|261324124|ref|ZP_05963321.1| DNA polymerase III subunit beta [Brucella neotomae 5K33] gi|261751326|ref|ZP_05995035.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513] gi|261755891|ref|ZP_05999600.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686] gi|265987733|ref|ZP_06100290.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1] gi|265992207|ref|ZP_06104764.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|265993947|ref|ZP_06106504.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str. Ether] gi|265999708|ref|ZP_05467475.2| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9] gi|260153101|gb|EEW88193.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M] gi|260923093|gb|EEX89661.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1] gi|261293836|gb|EEX97332.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1] gi|261295884|gb|EEX99380.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94] gi|261300104|gb|EEY03601.1| DNA polymerase III subunit beta [Brucella neotomae 5K33] gi|261303804|gb|EEY07301.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10] gi|261741079|gb|EEY29005.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513] gi|261745644|gb|EEY33570.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686] gi|262764928|gb|EEZ10849.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str. Ether] gi|263003273|gb|EEZ15566.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|263095428|gb|EEZ19029.1| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9] gi|264659930|gb|EEZ30191.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1] gi|326537731|gb|ADZ85946.1| DNA polymerase III, beta subunit [Brucella melitensis M5-90] Length = 376 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|260546287|ref|ZP_05822027.1| DNA polymerase subunit III [Brucella abortus NCTC 8038] gi|260759081|ref|ZP_05871429.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292] gi|260760807|ref|ZP_05873150.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|260096394|gb|EEW80270.1| DNA polymerase subunit III [Brucella abortus NCTC 8038] gi|260669399|gb|EEX56339.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292] gi|260671239|gb|EEX58060.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str. 86/8/59] Length = 376 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|256158692|ref|ZP_05456571.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1] gi|256254093|ref|ZP_05459629.1| DNA polymerase III subunit beta [Brucella ceti B1/94] gi|260169592|ref|ZP_05756403.1| DNA polymerase III subunit beta [Brucella sp. F5/99] Length = 372 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372 >gi|254700820|ref|ZP_05162648.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513] gi|254705187|ref|ZP_05167015.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686] gi|254707297|ref|ZP_05169125.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10] gi|254709164|ref|ZP_05170975.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94] gi|254713412|ref|ZP_05175223.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1] gi|254716231|ref|ZP_05178042.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1] gi|256030688|ref|ZP_05444302.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1] gi|256045792|ref|ZP_05448670.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str. Rev.1] gi|256060147|ref|ZP_05450329.1| DNA polymerase III subunit beta [Brucella neotomae 5K33] gi|256112511|ref|ZP_05453432.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str. Ether] gi|326408013|gb|ADZ65078.1| DNA polymerase III, beta chain [Brucella melitensis M28] Length = 372 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372 >gi|188535561|ref|YP_001909358.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99] gi|188030603|emb|CAO98498.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99] Length = 366 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + + Sbjct: 1 MKFTVERELLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A +DI R L +GA+I+ E G + + G S F L + P S+FP Sbjct: 61 QDHEPGATTVPARKFFDICRGLPEGAEIAVILE---GERMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F ++L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGDELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L DS ++V + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELVRLLDGGDSLLQVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDASCDLLKQAFSRAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|85713965|ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A] gi|85699091|gb|EAQ36959.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A] Length = 372 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 160/387 (41%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ L H R++ER+NTIP+ +VL++A + L +KA+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLSAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS +V AH+ YDIVRKL +GAQI + + + I G S F LQ+ PE++FP Sbjct: 61 TGTIGSTSVPAHMFYDIVRKLPEGAQILLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 E ++F LA++ LK L++RT FA++TEE RYYLNGI+ H L VATDG Sbjct: 120 LAAGEMTHAFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGNAKSATLRGVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + MP +I+PRK VGE+ R++ ++ + + LS+ +I I ++ ++ Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTIGNVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D A YVLMPMR+ Sbjct: 355 VHDRD---------SRGALYVLMPMRV 372 >gi|189023270|ref|YP_001934038.1| DNA polymerase III subunit beta [Brucella abortus S19] gi|254696436|ref|ZP_05158264.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str. 86/8/59] gi|254731348|ref|ZP_05189926.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292] gi|189018842|gb|ACD71564.1| DNA polymerase III, beta chain [Brucella abortus S19] Length = 372 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372 >gi|13474647|ref|NP_106216.1| DNA polymerase III subunit beta [Mesorhizobium loti MAFF303099] gi|260461962|ref|ZP_05810207.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] gi|14025402|dbj|BAB52002.1| DNA polymerase III beta subunit [Mesorhizobium loti MAFF303099] gi|259032209|gb|EEW33475.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] Length = 372 Score = 390 bits (1003), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ERS++L+ L H R++ER+NTIP+ +VLL A LE+KA+ ++E+T A PA Sbjct: 1 MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLSAEGASLEMKATDLDLEVTEATPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ K +E G + ++ G S+F LQ P+S+FP Sbjct: 61 VERGGATTVPAHLLYDIVRKLSDGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + + F L S LK L+E+T FA++TEE RYYLNGI+ H +E LKL +VATDG Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+D A MP II+PRK V E+ +++ D +V LS+++I I S+ ++ Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + AVDRVS +SS R +AVKLS+S ++ + Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLILDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + Y+ P++I FN KYLL++ ++ E F L + S Sbjct: 300 VNNPDSGSATEELAADYSSDPIEIGFNAKYLLDVAAQLTGT-----EAKFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ A YVLMPMR+ Sbjct: 355 IHDMADET---------ALYVLMPMRV 372 >gi|329297782|ref|ZP_08255118.1| DNA polymerase III subunit beta [Plautia stali symbiont] Length = 366 Score = 390 bits (1002), Expect = e-106, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++LLQ N+G L + + E+E+ + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L +GA+IS E G + + G S F L + P S+FP Sbjct: 61 QPHEPGATTVPARKFLDICRGLPEGAEISLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L ++ ++V + S I ++ + Sbjct: 176 RLAVCSMPV-GQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V++ ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVSYSGTELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDVASPA---------AAYVVMPMRL 366 >gi|50123358|ref|YP_052525.1| DNA polymerase III subunit beta [Pectobacterium atrosepticum SCRI1043] gi|49613884|emb|CAG77336.1| DNA polymerase III, beta chain [Pectobacterium atrosepticum SCRI1043] Length = 366 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++L+Q +G L + + E+E+ + Sbjct: 1 MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F EDL+ VATDGH Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L L ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKC-----EGVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASRAAAYVVMPMRL 366 >gi|296100373|ref|YP_003610519.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] gi|295054832|gb|ADF59570.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp. cloacae ATCC 13047] Length = 366 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GDSLPNHSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C +L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|157368282|ref|YP_001476271.1| DNA polymerase III subunit beta [Serratia proteamaculans 568] gi|157320046|gb|ABV39143.1| DNA polymerase III, beta subunit [Serratia proteamaculans 568] Length = 366 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ E G + + G S F L + P +FP Sbjct: 61 QPHEAGATTVPARKLFDICRGLPEGAEITVTLE---GERMLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPIGQQLP-SHSVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 ED---------GASKSAAYVVMPMRL 366 >gi|260567347|ref|ZP_05837817.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40] gi|260156865|gb|EEW91945.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40] Length = 376 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 169/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDI+RKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|300719140|ref|YP_003743943.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661] gi|299064976|emb|CAX62096.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661] Length = 366 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ N+G L + + E+E+ + + Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVNEGSLLLTGTDLEMEMVARVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +GA+I+ + G + + G S F L + P S+FP Sbjct: 61 QEHEPGATTVPARKFFDICRGLPEGAEITVMLD---GERMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWTSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q+ S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPVGQQLP-SHSVIVPRKGVIELVRLLDGGDTPLQVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVTYGGTDMEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|311277334|ref|YP_003939565.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1] gi|308746529|gb|ADO46281.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1] Length = 366 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F +A + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTVAQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCAMPI-GETLPNHSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|307942711|ref|ZP_07658056.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] gi|307773507|gb|EFO32723.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] Length = 372 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 173/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A+ G L +KA+ ++EI +IPA Sbjct: 1 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGSLNLKATDLDLEIVESIPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ G+ TV AH+ YDIVRKL DG+Q+ + T + I G S F LQ PES+FP Sbjct: 61 VEMGGATTVPAHMFYDIVRKLPDGSQVVLETTGDNST-LEIRAGRSRFTLQMLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 ++ + F L + ++ L++ T FA++TEE RYYLNGI+ H + AVATDG Sbjct: 120 LTAGDFSHGFALTAGDIRKLIDTTQFAISTEETRYYLNGIYLHTVNTPSGERFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV MP IIVPRK VGEI ++L D++V++ LSE++I + ++ ++ Sbjct: 180 HRLAQAEVTAPNGSHGMPGIIVPRKTVGEIQKLLEEPDANVQIELSETKIRITTGAVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKE+RV+ ++AVDRVS +SS R +AVKLSLS ++ +T Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLSDGRMVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y MDI FN +YLL+I + +SS D +FRL S S Sbjct: 300 VNNPDSGSATEELAVEYTSDAMDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D + +VLMPMR+ Sbjct: 355 IQDNTVD---------DCLFVLMPMRV 372 >gi|261215133|ref|ZP_05929414.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya] gi|260916740|gb|EEX83601.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya] Length = 376 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|254694808|ref|ZP_05156636.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya] Length = 372 Score = 389 bits (1001), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372 >gi|260755858|ref|ZP_05868206.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870] gi|260884883|ref|ZP_05896497.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68] gi|260675966|gb|EEX62787.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870] gi|260874411|gb|EEX81480.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68] Length = 376 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 5 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 65 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 124 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376 >gi|238750288|ref|ZP_04611790.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380] gi|238711521|gb|EEQ03737.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380] Length = 366 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + +EV L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EEVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 N A YV+MPMR+ Sbjct: 350 ED---------GNSQAAAYVVMPMRL 366 >gi|254690319|ref|ZP_05153573.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870] gi|256258573|ref|ZP_05464109.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68] Length = 372 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 1 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 61 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 120 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372 >gi|120552946|ref|YP_957297.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8] gi|120322795|gb|ABM17110.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8] Length = 367 Score = 389 bits (1000), Expect = e-106, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R ++ L ++E+K T+PV +VLL+A D L + + E+E+ + P Sbjct: 1 MKLTISRESLITPLQSIAGVVEKKQTMPVLSNVLLEAEDNTLTLTGTNMEVELVARVAPV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G ITV A L DI R L D A I E G +++ G+S+F L + P FP Sbjct: 61 HVDQPGRITVPARKLADICRALGDEAPIDLALE---GDRLHLRSGNSHFTLSTLPAEHFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++E + L L +++ T FAMA +++RYYLNG+ ++ ++ VATDGH Sbjct: 118 NVEDEPESFRLALPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDVNHARV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A++D+ ++ +IVPRK V E+ R+L ++S V + + ++ + + S + + Sbjct: 176 RLAMAQLDLDTGCPELRQVIVPRKGVLELARLLDDEESPVTLVIGDNHLRATVGSYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y VIP DK + + + L+ + R I+S I+ V+L+LS ++L + Sbjct: 236 KLIEGKFPDYNRVIPRGGDKTVLADRSTLKSTLQRAGILSHENIRGVRLNLSPNQLQVFA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +++ V Y + I FN YL+++++ + DD+V L + NSS I Sbjct: 296 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----DDQVKITLSNPNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N YV+MPMR+ Sbjct: 351 EAQ---------NDNRCLYVVMPMRL 367 >gi|327395908|dbj|BAK13330.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis AJ13355] Length = 366 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++L+Q N+G L + + E+E+ + Sbjct: 1 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L +GA+I+ E G + + G S F L + P S+FP Sbjct: 61 QPHETGATTVPARKFLDICRGLPEGAEINVTLE---GERMLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L D+ ++V + S I ++ + Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDVVSPA---------AAYVVMPMRL 366 >gi|319779751|ref|YP_004139227.1| DNA polymerase III, subunit beta [Mesorhizobium ciceri biovar biserrulae WSM1271] gi|317165639|gb|ADV09177.1| DNA polymerase III, beta subunit [Mesorhizobium ciceri biovar biserrulae WSM1271] Length = 372 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ERS++L+ L H R++ER+NTIP+ +VLL A LE+KA+ ++E+T A PA Sbjct: 1 MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLGAEGASLEMKATDLDLEVTEATPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ K +E G + ++ G S+F LQ P+S+FP Sbjct: 61 VERGGATTVPAHLLYDIVRKLADGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + + F L S LK L+E+T FA++TEE RYYLNGI+ H +E LKL +VATDG Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+D A MP II+PRK V E+ +++ D +V LS+++I I S+ ++ Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L ++ + AVDRVS +SS R +AVKLS+S ++ + Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLIIDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E ++ Y+ P++I FN KYLL++ ++ E F L + S Sbjct: 300 VNNPDSGSATEELSADYSSDPIEIGFNAKYLLDVAAQLTGT-----EAKFMLADAGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ A YVLMPMR+ Sbjct: 355 IHDMADET---------ALYVLMPMRV 372 >gi|270264120|ref|ZP_06192387.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13] gi|270041769|gb|EFA14866.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13] Length = 366 Score = 389 bits (999), Expect = e-106, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E+E + + G S F L + P +FP Sbjct: 61 QPHEAGATTVPARKFFDICRGLPEGAEIAVTLESE---RMLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPIGQQLP-SHSVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GASQAAAYVVMPMRL 366 >gi|227113115|ref|ZP_03826771.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp. brasiliensis PBR1692] gi|227328544|ref|ZP_03832568.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp. carotovorum WPP14] gi|261819372|ref|YP_003257478.1| DNA polymerase III subunit beta [Pectobacterium wasabiae WPP163] gi|261603385|gb|ACX85871.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae WPP163] Length = 366 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++L+Q +G L + + E+E+ + Sbjct: 1 MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L L ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKC-----EGVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASRAAAYVVMPMRL 366 >gi|239830848|ref|ZP_04679177.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] gi|239823115|gb|EEQ94683.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] Length = 385 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 169/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 14 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 74 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH E D LKL AVATDG Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 192 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ + V V LS+++I + S+ ++ Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPEVVVTVELSDAKIRFTVGSVVLT 252 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSGSD-----AVFMLADAGSPTL 367 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 368 VRDTGDE---------DVLYVLMPMRV 385 >gi|319407987|emb|CBI81641.1| DNA polymerase III, beta chain [Bartonella schoenbuchensis R1] Length = 373 Score = 388 bits (998), Expect = e-106, Method: Composition-based stats. Identities = 161/387 (41%), Positives = 249/387 (64%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT++R+ L+ L R++ER+NTIP+ +VL+ A+ +++KA+ ++E+ + A Sbjct: 1 MHITIDRNQFLKSLNRVHRVVERRNTIPILSNVLINASGDGVQLKATDLDLEVIESSLAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ITV AHLLYDIVRKL G++I +N +++ G +NF LQ P+ +FP Sbjct: 61 VEQEGAITVPAHLLYDIVRKLSSGSEIVLKVDNNQANTMSVVSGCANFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ F L++S LK L + T FA++TEE RYYLNGI+FH+ ++ LKL VATDGH Sbjct: 121 SLPGQFSCCFSLSASDLKRLFDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ ++I MP +I+PRKAVGE+ ++LS + + V + LSE++I ++ S+ ++ Sbjct: 181 RLAQVDMEAPSEIKDMPGVIIPRKAVGELQKLLSEETEGDVSIELSETKIRFSVGSVVLT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP +NDK+L VN + AVDRVS +SS R +AVKL++ + +L + Sbjct: 241 SKLIDGTFPEYQRVIPLNNDKKLAVNRQDFSAAVDRVSTISSDRGRAVKLTIENGQLKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I ++S DE+VF L + + Sbjct: 301 VNNPDSGSAEDQLVADYTSDPLEIGFNSRYLLDIAAQLTS-----DEMVFMLADAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + A YVLMP+R+ Sbjct: 356 IRESDDAA---------ALYVLMPIRV 373 >gi|291615642|ref|YP_003518384.1| DnaN [Pantoea ananatis LMG 20103] gi|291150672|gb|ADD75256.1| DnaN [Pantoea ananatis LMG 20103] Length = 407 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++L+Q N+G L + + E+E+ + Sbjct: 42 MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 101 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A DI R L +GA+I+ E G + + G S F L + P S+FP Sbjct: 102 QPHETGATTVPARKFLDICRGLPEGAEINVTLE---GERMLVRSGRSRFSLSTLPASDFP 158 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 159 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 216 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E+LR+L D+ ++V + S I ++ + Sbjct: 217 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 275 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L ++ ++L +T Sbjct: 276 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 335 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + V L S SSV I Sbjct: 336 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 390 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 391 EDVVSPA---------AAYVVMPMRL 407 >gi|238765485|ref|ZP_04626404.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638] gi|238696309|gb|EEP89107.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638] Length = 366 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GAQI+ + G + + G S F L + P ++FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAQITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GASQAAAYVVMPMRL 366 >gi|123444341|ref|YP_001008306.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp. enterocolitica 8081] gi|332163520|ref|YP_004300097.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] gi|122091302|emb|CAL14188.1| DNA polymerase III, beta subunit protein [Yersinia enterocolitica subsp. enterocolitica 8081] gi|318608024|emb|CBY29522.1| DNA polymerase III beta subunit [Yersinia enterocolitica subsp. palearctica Y11] gi|325667750|gb|ADZ44394.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp. palearctica 105.5R(r)] Length = 366 Score = 388 bits (997), Expect = e-106, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GASQAAAYVVMPMRL 366 >gi|295095339|emb|CBK84429.1| DNA polymerase III, beta subunit [Enterobacter cloacae subsp. cloacae NCTC 9394] Length = 366 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GDSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|238759585|ref|ZP_04620747.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236] gi|238702244|gb|EEP94799.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236] Length = 366 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASQAAAYVVMPMRL 366 >gi|22127980|ref|NP_671403.1| DNA polymerase III subunit beta [Yersinia pestis KIM 10] gi|45443727|ref|NP_995266.1| DNA polymerase III subunit beta [Yersinia pestis biovar Microtus str. 91001] gi|51598226|ref|YP_072417.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP 32953] gi|108810132|ref|YP_654048.1| DNA polymerase III subunit beta [Yersinia pestis Antiqua] gi|108814114|ref|YP_649881.1| DNA polymerase III subunit beta [Yersinia pestis Nepal516] gi|150260969|ref|ZP_01917697.1| DNA polymerase III, beta subunit protein [Yersinia pestis CA88-4125] gi|153950603|ref|YP_001403094.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP 31758] gi|162419235|ref|YP_001608447.1| DNA polymerase III subunit beta [Yersinia pestis Angola] gi|165926167|ref|ZP_02221999.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165936833|ref|ZP_02225399.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|166009556|ref|ZP_02230454.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166213164|ref|ZP_02239199.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|167401667|ref|ZP_02307161.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167422858|ref|ZP_02314611.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167425558|ref|ZP_02317311.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|167470925|ref|ZP_02335629.1| DNA polymerase III, beta subunit [Yersinia pestis FV-1] gi|170022264|ref|YP_001718769.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis YPIII] gi|186893346|ref|YP_001870458.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis PB1/+] gi|218931073|ref|YP_002348948.1| DNA polymerase III subunit beta [Yersinia pestis CO92] gi|229839803|ref|ZP_04459962.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229841888|ref|ZP_04462044.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229896765|ref|ZP_04511928.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A] gi|229904653|ref|ZP_04519764.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516] gi|270488364|ref|ZP_06205438.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27] gi|294505624|ref|YP_003569686.1| DNA polymerase III subunit beta [Yersinia pestis Z176003] gi|21961125|gb|AAM87654.1|AE014012_11 DNA polymerase III, beta-subunit [Yersinia pestis KIM 10] gi|45438597|gb|AAS64143.1| DNA polymerase III, beta subunit protein [Yersinia pestis biovar Microtus str. 91001] gi|51591508|emb|CAH23180.1| DNA polymerase III, beta subunit protein [Yersinia pseudotuberculosis IP 32953] gi|108777762|gb|ABG20281.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516] gi|108782045|gb|ABG16103.1| DNA polymerase III, beta subunit [Yersinia pestis Antiqua] gi|115349684|emb|CAL22665.1| DNA polymerase III, beta subunit protein [Yersinia pestis CO92] gi|149290377|gb|EDM40454.1| DNA polymerase III, beta subunit protein [Yersinia pestis CA88-4125] gi|152962098|gb|ABS49559.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis IP 31758] gi|162352050|gb|ABX85998.1| DNA polymerase III, beta subunit [Yersinia pestis Angola] gi|165915075|gb|EDR33686.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. IP275] gi|165922027|gb|EDR39204.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. F1991016] gi|165991478|gb|EDR43779.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. E1979001] gi|166205462|gb|EDR49942.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. B42003004] gi|166958250|gb|EDR55271.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. MG05-1020] gi|167049049|gb|EDR60457.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua str. UG05-0454] gi|167055572|gb|EDR65365.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Mediaevalis str. K1973002] gi|169748798|gb|ACA66316.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis YPIII] gi|186696372|gb|ACC87001.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis PB1/+] gi|229678771|gb|EEO74876.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516] gi|229691227|gb|EEO83280.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. India 195] gi|229696169|gb|EEO86216.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis str. PEXU2] gi|229700203|gb|EEO88239.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A] gi|262363788|gb|ACY60509.1| DNA polymerase III subunit beta [Yersinia pestis D106004] gi|262367725|gb|ACY64282.1| DNA polymerase III subunit beta [Yersinia pestis D182038] gi|270336868|gb|EFA47645.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27] gi|294356083|gb|ADE66424.1| DNA polymerase III subunit beta [Yersinia pestis Z176003] gi|320017426|gb|ADW00998.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Medievalis str. Harbin 35] Length = 366 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASQAAAYVVMPMRL 366 >gi|238783049|ref|ZP_04627076.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970] gi|238716050|gb|EEQ08035.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970] Length = 366 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GASQAAAYVVMPMRL 366 >gi|238797844|ref|ZP_04641336.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969] gi|238718260|gb|EEQ10084.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969] Length = 366 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSDVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GASQAAAYVVMPMRL 366 >gi|217979804|ref|YP_002363951.1| DNA polymerase III subunit beta [Methylocella silvestris BL2] gi|217505180|gb|ACK52589.1| DNA polymerase III, beta subunit [Methylocella silvestris BL2] Length = 372 Score = 388 bits (996), Expect = e-105, Method: Composition-based stats. Identities = 162/387 (41%), Positives = 237/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH R++ER+NTIP+ +VLL+A L +KA+ ++E+T + A Sbjct: 1 MKVTLERAALLKSLGHVHRVVERRNTIPILSNVLLRAEGKSLLLKATDLDLEVTERLAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G T+ AH LYDIVRKL DG+Q+S + G ++ + G S F LQ+ P+S+FP Sbjct: 61 VGVAGGTTLPAHTLYDIVRKLPDGSQVSLEIAGDSG-QLLLRSGRSRFNLQTLPDSDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 ++ + F L + LK L+E+T FA++ EE RYYLNGIF H E + L AVATDG Sbjct: 120 LAAGDFSHDFLLPPADLKRLIEKTQFAISNEETRYYLNGIFMHSMEAEGASVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + MP +IVPRKAV E+ +++ + ++V LS ++ + ++ Sbjct: 180 HRLARVEIACPKGASGMPGVIVPRKAVTEVQKLIEDLSADIRVELSTTKARFTFGDVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V AVDRVS +SS R +AVKL+++ KL ++ Sbjct: 240 TKLIDGTFPDYMRVIPAGNDKRLIVERGPFAAAVDRVSTISSERGRAVKLAIADGKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E ++V Y+ P+DI FN +YLL+I + + S D +F+L S Sbjct: 300 VTNPDSGSAQEELDVDYDSTPLDIGFNARYLLDITEQLDS-----DTALFKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +D +A YVLMPMR+ Sbjct: 355 VQDRD---------GASALYVLMPMRV 372 >gi|253686411|ref|YP_003015601.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] gi|251752989|gb|ACT11065.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp. carotovorum PC1] Length = 366 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK VER +L+ L + + T+P+ ++L+Q + L + + E+E+ + Sbjct: 1 MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEDALSLTGTDLEMEMVAKVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A L+DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L L ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKC-----EGVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASRAAAYVVMPMRL 366 >gi|37524034|ref|NP_927378.1| DNA polymerase III subunit beta [Photorhabdus luminescens subsp. laumondii TTO1] gi|36783457|emb|CAE12297.1| DNA polymerase III, beta chain [Photorhabdus luminescens subsp. laumondii TTO1] Length = 366 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMMARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L DGA+IS + G + + G S F L + P S+FP Sbjct: 61 LPHEVGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 NA YV+MPMR+ Sbjct: 350 EDC---------ANHNAAYVVMPMRL 366 >gi|84501259|ref|ZP_00999464.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597] gi|84390550|gb|EAQ03038.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597] Length = 372 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGNEVQFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGAQ++ ++ G + ++ G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGAQVTLSEDGAAG-RLTVAAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ E + L VATDG Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRMLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK VGE+ ++L + V VS+SE+++ ++++ Sbjct: 180 HRLARIDATLPEGAADMPGVIVPRKTVGELRKLLDDDELQVAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ ++ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFAKAVDRVATVSSERSRAVKLALDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +S+ Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + +A YV+MPMR+ Sbjct: 355 MR---------EGSDTSAVYVVMPMRV 372 >gi|261341639|ref|ZP_05969497.1| hypothetical protein ENTCAN_08107 [Enterobacter cancerogenus ATCC 35316] gi|288315996|gb|EFC54934.1| DNA polymerase III, beta subunit [Enterobacter cancerogenus ATCC 35316] Length = 366 Score = 387 bits (995), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GDSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|182679952|ref|YP_001834098.1| DNA polymerase III subunit beta [Beijerinckia indica subsp. indica ATCC 9039] gi|182635835|gb|ACB96609.1| DNA polymerase III, beta subunit [Beijerinckia indica subsp. indica ATCC 9039] Length = 371 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 161/387 (41%), Positives = 233/387 (60%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH R++ER+NTIP+ +VLL ++ L +KA+ ++E+T + A Sbjct: 1 MKVTLERAALLKALGHVHRVVERRNTIPILSNVLLHSDGDGLLLKATDLDLEVTERLTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ AH+LYDIVRKL DG+QIS E + + G S F LQS PES+FP Sbjct: 61 TGTQGGTTLPAHILYDIVRKLPDGSQIS--LETTEAGPLQLRSGRSRFTLQSLPESDFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + +F L + LK L+++T FA+++EE RYYLNGIF H E + L AVATDG Sbjct: 119 LAAGTFEQTFTLKAGDLKRLIDKTQFAISSEETRYYLNGIFMHTTEVEGHVMLRAVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + MP II+PRK V E+ +++ + VK+ +S ++I + ++ Sbjct: 179 HRLARVEIPAPQGASGMPGIIIPRKTVAEVQKLVEDQAQEVKLEVSPTKIRFTFGEVVLT 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V+ + AVDRVS +SS R +AVKL+L+ KL ++ Sbjct: 239 SKLIDGTFPDYARVIPSGNDKFLTVDRGPFQDAVDRVSTISSERGRAVKLALAEGKLTLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A+E + V Y+ P+DI FN +YLL+I + S D +F+ S Sbjct: 299 VTNPDSGSAVEELEVDYDAAPIDIGFNARYLLDIAAQLDS-----DTALFKFADPGSPTL 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D +A YVLMPMR+ Sbjct: 354 VLDRD---------GASALYVLMPMRV 371 >gi|88705399|ref|ZP_01103110.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71] gi|88700489|gb|EAQ97597.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71] Length = 367 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 208/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R +L+ L ++ER+ T+PV +VLL + L I + E+E+ G + Sbjct: 1 MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L DGA + + + + G S F L + P EFP Sbjct: 61 TAGEAGEITVPARKLADICKSLPDGADLEIAVAD---GKATVRSGRSRFTLATLPAREFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L L+ L+ERT FAMA +++RYYLNG+++ + +L AVATDGH Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAG--RLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +I+PRK V E+ R++ S D V + L + + + + Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQSDDEDVTIILGSNHLRATTAEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P + DK ++ + T LRQA R +I+S+ + + V+L LS L + Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSEGSLEIVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A ES+ V Y+ ++I FN YLL+++ +S ++ + F L NSS + Sbjct: 296 NNPEQEQAEESLPVDYSGDALEIGFNVGYLLDVLGVLSGEK-----IRFSLSDPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 351 EETD---------GGDSLYVVMPMRL 367 >gi|85057980|ref|YP_453682.1| DNA polymerase III subunit beta [Sodalis glossinidius str. 'morsitans'] gi|84778500|dbj|BAE73277.1| DNA polymerase III beta subunit protein DnaN [Sodalis glossinidius str. 'morsitans'] Length = 366 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ ++ L + + E+E+ + S Sbjct: 1 MKFIVEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVSEDRLLLTGTDLEMEMVAQVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + I G S + L + P S FP Sbjct: 61 AAHEPGATTVPARKFFDICRGLPEGAEIAVTLE---GERMLIRSGRSRYSLSTLPASNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L+ S+LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + + S+IVPRK V E++R+L ++ VK+ + + I ++ + Sbjct: 176 RLAVCAMSV-GEALPSHSVIVPRKGVMELVRMLDGGENPVKLQIGSNNIRASVGDYIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L LS+++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDVLKQAFARAAILSNEKFRGVRLYLSANQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L SSV I Sbjct: 295 NNPEQEEAEEILDVTYQGSEMEIGFNVSYVLDVLNALKC-----EEVRLLLTDGVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASQAAAYVVMPMRL 366 >gi|240849790|ref|YP_002971178.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup] gi|240266913|gb|ACS50501.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup] Length = 373 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 163/387 (42%), Positives = 250/387 (64%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV+RS L+ LG R++ER+NT+P+ +VL+ A +G +++KA+ ++E+T + + Sbjct: 1 MRITVDRSQFLKSLGRVHRVVERRNTVPILSNVLIDAENGSVQLKATDLDLEVTESFAVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AHLLYDI+RKL D ++ + +++ G ++F LQ P+++FP Sbjct: 61 VKQAGATTVPAHLLYDIIRKLPDSNEVVLSVDENQAGTMSVVSGCAHFQLQCLPKADFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+ H+ + LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYLHVINDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA E++ + + MP +IVPRKAVGE+ ++LS + DS V + LSE++I ++ S+ + Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDSDVCIELSETKIRFSVGSVIFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDKEL VN + AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELIVNRQDFSSAVDRVSTISSDRGRAVKLTIEHRQLRLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A + ++V Y P++I FN +YLL+I +SS DE+VF L + + Sbjct: 301 VNSPDSGSAEDQLSVTYASEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + YVLMP+R+ Sbjct: 356 IRDNDD---------ADVLYVLMPIRV 373 >gi|153007349|ref|YP_001368564.1| DNA polymerase III subunit beta [Ochrobactrum anthropi ATCC 49188] gi|151559237|gb|ABS12735.1| DNA polymerase III, beta subunit [Ochrobactrum anthropi ATCC 49188] Length = 385 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 169/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS++L+ L H R++ER+NTIP+ +VLLQA L +KA+ ++E+ A A Sbjct: 14 MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AHLLYDIVRKL DGA++ N G +++ G S+F LQ P+S+FP Sbjct: 74 VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSISVISGKSSFRLQCLPQSDFPE 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + +SF + + LK L++RT FA++TEE RYYLNGIFFH +E LKL AVATDG Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESEGALKLRAVATDG 192 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ + MP II+PRK V E+ +++ D V V LS+++I + S+ ++ Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 252 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+YQ VIP NDK+L + +VDRVS +SS R +AVKLS++ +L +T Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y+ P+DI FN KYLL+I +S + VF L + S Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSGSD-----AVFMLADAGSPTL 367 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + YVLMPMR+ Sbjct: 368 VRDTGDE---------DVLYVLMPMRV 385 >gi|90421530|ref|YP_529900.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB18] gi|90103544|gb|ABD85581.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB18] Length = 372 Score = 387 bits (994), Expect = e-105, Method: Composition-based stats. Identities = 168/387 (43%), Positives = 238/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VLL+A G L +KA+ ++E+T +PA Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLLRAEKGRLSLKATDLDLEVTETLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PE++FP Sbjct: 61 TATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPENDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E +SF L ++ +K L++RT FA++TEE RYYLNGI+ H L AVATDG Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHGAGTAAAATLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + + A MP +IVPRK VGE+ R++ +++V + LS +I + + ++ Sbjct: 180 HRLAQVDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDTEAAVGIELSVGKIRFTLGDVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS+ KL ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V +L S Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +D A YVLMPMR+ Sbjct: 355 VQDRDA---------KGALYVLMPMRV 372 >gi|238793144|ref|ZP_04636772.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909] gi|238727517|gb|EEQ19043.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909] Length = 366 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 NPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GASQAAAYVVMPMRL 366 >gi|238787827|ref|ZP_04631624.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641] gi|238724170|gb|EEQ15813.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641] Length = 366 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 QPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPV-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L+ +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 N A YV+MPMR+ Sbjct: 350 ED---------GNSQAAAYVVMPMRL 366 >gi|145597326|ref|YP_001161401.1| DNA polymerase III subunit beta [Yersinia pestis Pestoides F] gi|145209022|gb|ABP38429.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides F] Length = 366 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P +FP Sbjct: 61 QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 EDSASQV---------AAYVVMPMRL 366 >gi|183597171|ref|ZP_02958664.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827] gi|188023485|gb|EDU61525.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827] Length = 366 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ +P + Sbjct: 1 MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALLLTGTDLEMEMMAHVPLT 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I +++ + + G S F L + P ++FP Sbjct: 61 QEHDVGATTVPARKFFDIWRGLPEGSEIRVELDDD---RLLVRSGRSRFSLSTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F + L+ V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI + S+IVPRK V E++R+L D+ V++ + + I ++ + Sbjct: 176 RLAVCAMDIGQDLP-SHSVIVPRKGVIELMRLLDGGDTPVQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S + V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVNYQGTEMEIGFNVSYILDVLNALKS-----ENVTLFLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EDSASSA---------AVYVVMPMRL 366 >gi|320539855|ref|ZP_08039514.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson] gi|320030041|gb|EFW12061.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson] Length = 366 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 133/386 (34%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQA +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQAMEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ ENE + + G S F L + P ++FP Sbjct: 61 QTHEAGATTVPARKFFDICRGLPEGAEIAVTLENE---RILVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ +ATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q+ S+IVPRK V E+LR+L S D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPIGQQLP-SHSVIVPRKGVMELLRLLDSGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKILEAGCDLLKQAFARAAILSNEKFRGVRLYASHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + S + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKS-----ENVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------GVSQAAAYVVMPMRL 366 >gi|144900239|emb|CAM77103.1| DNA polymerase III subunit beta [Magnetospirillum gryphiswaldense MSR-1] Length = 372 Score = 386 bits (993), Expect = e-105, Method: Composition-based stats. Identities = 147/387 (37%), Positives = 221/387 (57%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ L H ++ER+NTIP+ +V L+ G L + A+ +++I PA Sbjct: 1 MKLTIERAQLLKSLAHVQSVVERRNTIPILSNVKLEGRPGSLSLNATDMDLDIIETAPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T AH Y+IVRKL DG+Q+ + + G + + G S F L P +FP Sbjct: 61 VSRPGATTAPAHTFYEIVRKLPDGSQVEIEHDADTGL-MTLRSGRSKFTLSCLPVEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E ++F L ++ LK LV+RT FA++TEE RYYLNGI+ H L AVATDG Sbjct: 120 LSGGELPFTFCLTAAELKALVDRTRFAISTEETRYYLNGIYLHAATTPGGEVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA EV + A MP +I+PRK V E+ +++ + V VSLSE+++ ++ Sbjct: 180 HRLARVEVTLPEGAAGMPGVIIPRKTVQEMRKLIDETEGEVTVSLSETKLRFAFADAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK+L V+ + QAVDRVS +S+ + +A+KLSL + ++ Sbjct: 240 SKLIDGTFPDYERVIPADNDKQLDVDVKSFAQAVDRVSAISTEKSRAIKLSLEKGTVTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +P+ G A E + Y P++I FN +YLL+I+ + D+ F + + S Sbjct: 300 ASSPENGSATEEIEAQYESTPLEIGFNSRYLLDILGQVEGDK-----ACFSMADAASPTV 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R A YVLMPMR+ Sbjct: 355 VRD---------GVNAGAIYVLMPMRV 372 >gi|268593489|ref|ZP_06127710.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131] gi|291310911|gb|EFE51364.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131] Length = 366 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER +L+ L + + T+P+ ++LLQ +G L++ + E+E+ + + Sbjct: 1 MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGTLQLTGTDLEMEMMANVALT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I ++ + + G S F L + P ++FP Sbjct: 61 GEHEIGATTVPARKFFDIWRGLPEGSEIHVELNDD---RLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F ED L V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFET--EDQMLRTVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMDI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S + V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYILDVLNALKS-----ENVQLLLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + A YV+MPMR+ Sbjct: 350 EDADSKA---------AVYVVMPMRL 366 >gi|328541626|ref|YP_004301735.1| DNA polymerase III, beta subunit [polymorphum gilvum SL003B-26A1] gi|326411378|gb|ADZ68441.1| DNA polymerase III, beta subunit [Polymorphum gilvum SL003B-26A1] Length = 372 Score = 386 bits (992), Expect = e-105, Method: Composition-based stats. Identities = 164/387 (42%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER+D+L+ L H R++ER+NTIP+ +VLL+A G L++KA+ ++E+ +PA Sbjct: 1 MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRAEHGALKLKATDLDLEVLETVPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G TV AH++YDIVRKL +G+Q+ + T + I G S F LQ PE++FP Sbjct: 61 IEAPGGTTVPAHMIYDIVRKLPEGSQVVLETTGDNAT-LEIRAGRSRFALQMLPEADFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + + F L++ ++ L++ T FA++TEE RYYLNGI+ H + K AVATDG Sbjct: 120 LTAGTFSHQFTLSAGAIRKLIDTTQFAISTEETRYYLNGIYLHTVDTPQGQKFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AEV A A MP IIVPRK VGEI ++L +++ V+V +S+++I + + ++ Sbjct: 180 HRLAQAEVPAPAGAAGMPGIIVPRKTVGEIQKLLEDREAEVQVEISDTKIRVTTGPVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDKELRV+ R+AVDRVS +SS R +AVKL+LS +L + Sbjct: 240 SKLIDGTFPDYGRVIPQHNDKELRVDRDEFREAVDRVSTISSERGRAVKLALSEGRLVLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A E + V Y+ P++I FN +YLL+I ++ D +FRL S Sbjct: 300 VNNPDSGSATEELAVEYDSDPLEIGFNSRYLLDIAAQLTG-----DTALFRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + +VLMPMR+ Sbjct: 355 VQDNAAE---------DCLFVLMPMRV 372 >gi|84684520|ref|ZP_01012421.1| DNA polymerase III subunit beta [Maritimibacter alkaliphilus HTCC2654] gi|84667499|gb|EAQ13968.1| DNA polymerase III subunit beta [Rhodobacterales bacterium HTCC2654] Length = 372 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 153/387 (39%), Positives = 236/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+VER+ +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISVERAVLLKAVGQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA + + G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGAMVQLTDDGAAG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H++ E L VATDG Sbjct: 120 MASSEYSANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDAEGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPKGAEDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N K++ V+ +AVDRV+ +SS R +AVKL+L+ DKL ++ Sbjct: 240 SKVIDGTFPDYTRVIPMGNTKKMEVDAAEFAKAVDRVATVSSERSRAVKLALAEDKLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + M+I FN KYLLEI + +V + VF D++ V Sbjct: 300 VNAPDAGAAEEELIVAYGDEGMEIGFNAKYLLEI-----ASQVDRENAVFMFDNAGQPVL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|254472242|ref|ZP_05085642.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062] gi|211958525|gb|EEA93725.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062] Length = 372 Score = 386 bits (991), Expect = e-105, Method: Composition-based stats. Identities = 167/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+++L+ L H R++ER+NTIP+ +V+LQA G L++KA+ ++E+ +I A Sbjct: 1 MKVTLERTELLKSLTHVHRVVERRNTIPILSNVMLQAEGGNLKLKATDLDLEVVESIAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AH++Y+IVRKL DG+Q+ + T + I G S F LQ P ++FP Sbjct: 61 VETPGATTVPAHMIYEIVRKLPDGSQVVLETSGDDST-MEIRAGRSRFALQILPVTDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 E+ +SF + + ++ L++ T FA++TEE RYYLNGI+ H E L+ AVATDG Sbjct: 120 LTAGEFSHSFTMTAGGIRKLIDSTQFAISTEETRYYLNGIYMHSLDIGEGLRFRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE++ MP IIVPRK VGEI ++L + +KV +SE++I I + ++ Sbjct: 180 HRLAQAELEAPEGSDGMPGIIVPRKTVGEIQKLLDDPEVEIKVEISETKIRFTIGDIILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDKELRV+ ++AVDRVS ++S R +AVK++LS K+ +T Sbjct: 240 SKLIDGTFPDYERVIPKGNDKELRVDRDVFKEAVDRVSTIASDRGRAVKMALSEGKIVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y+ +I FN KYLL+I + + D +F L S S Sbjct: 300 VTNPDSGTATEEVAVEYDNEEFEIGFNSKYLLDIAAQLEA-----DTALFTLADSGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + D A YVLMPMR+ Sbjct: 355 IRDEGSDE---------AIYVLMPMRV 372 >gi|149375635|ref|ZP_01893404.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893] gi|149360037|gb|EDM48492.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893] Length = 371 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R +L L ++ERK T+PV +VLL A D L + + E+E+ G + P Sbjct: 5 MKLTISRESLLTPLQSIAGVVERKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVGRVSPV 64 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G ITV A L DI R L D A I E G +++ G S+F L + P FP Sbjct: 65 HVDQPGRITVPARKLSDICRALGDEAPIELALE---GDRLHLRCGASHFTLSTLPAEHFP 121 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +++ + EL L + + T FAMA +++RYYLNG+ ++++ ++ VATDGH Sbjct: 122 NVEDDAESFGLELPQKELSRMFDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 179 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A D+ + +IVPRK V E+ R+L ++ V + + ++ + + S + + Sbjct: 180 RLAMAHFDLPTGCPEPRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 239 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y VIP DK + + L+ + R I+S I+ V+L+L+ ++L + Sbjct: 240 KLIEGKFPDYNRVIPRGGDKVVLADRATLKNTLQRAGILSHENIRGVRLNLAPNELQVFA 299 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +++ V Y + I FN YL+++++ + +D+V L + NSS I Sbjct: 300 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLANPNSSALI 354 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N YV+MPMR+ Sbjct: 355 EAE---------NDNRCLYVVMPMRL 371 >gi|15988190|pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of Beta-Delta (1-140) gi|16974833|pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex gi|16974834|pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta Subunit Wrench Of The Clamp Loader Complex Of E. Coli Dna Polymerase Iii: Structure Of The Beta-Delta Complex Length = 366 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ ++V + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R + S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAAASNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|238754005|ref|ZP_04615364.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473] gi|238707757|gb|EEQ00116.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473] Length = 366 Score = 385 bits (990), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVTLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFMLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L S SSV I Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNTLKC-----EDVRLLLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 ED---------SASQAAAYVVMPMRL 366 >gi|300721091|ref|YP_003710359.1| DNA polymerase III subunit beta [Xenorhabdus nematophila ATCC 19061] gi|297627576|emb|CBJ88095.1| DNA polymerase III, beta-subunit [Xenorhabdus nematophila ATCC 19061] Length = 366 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E E+ + Sbjct: 1 MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLETEMKARVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A +DI R L DGA+IS + G + + G S F L + P S+FP Sbjct: 61 QPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++I + S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVKI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 EN---------SASQAATYVVMPMRL 366 >gi|149202936|ref|ZP_01879907.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035] gi|149143482|gb|EDM31518.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035] Length = 372 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DG+ ++ + G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGASG-RLTVQAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ + MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + + V+ QAVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N A YV+MPMR+ Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372 >gi|85705684|ref|ZP_01036781.1| DNA polymerase III subunit beta [Roseovarius sp. 217] gi|85669674|gb|EAQ24538.1| DNA polymerase III subunit beta [Roseovarius sp. 217] Length = 372 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DG+ ++ + G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGTSG-RLTVQAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ + MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + + V+ QAVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N A YV+MPMR+ Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372 >gi|49473789|ref|YP_031831.1| DNA polymerase III subunit beta [Bartonella quintana str. Toulouse] gi|49239292|emb|CAF25618.1| DNA polymerase III, beta chain [Bartonella quintana str. Toulouse] Length = 373 Score = 385 bits (989), Expect = e-105, Method: Composition-based stats. Identities = 165/387 (42%), Positives = 251/387 (64%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +TV+R+ +L+ LG R++ER+NT+P+ +VL+ A+ +++KA+ ++E+T + A+ Sbjct: 1 MHVTVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFMAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV AHLLYDIVRKL DG++I + + +++ G ++F LQ P+ +FP Sbjct: 61 VKQAGAITVPAHLLYDIVRKLLDGSEIVLSVDMNQASTMSVVSGCAHFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ ++ LKL VATDGH Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + + MP II+PRKAVGE+ ++LS + + +V V LSE++I ++ S+ + Sbjct: 181 RLAQVDMEAPSGVKDMPGIIIPRKAVGELQKLLSEEINDNVCVELSETKIRFSVGSVVFT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN N AVDRVS +SS R +AVKL++ +L + Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNKQNFSSAVDRVSTISSDRGRAVKLTIEQGQLKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A + + Y P++I FN +YLL+I +S DE+VF L + + Sbjct: 301 VHNPDSGSAEDQLAATYTSDPLEIGFNSRYLLDIAGQLSG-----DEMVFMLAEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D NA YVLMP+R+ Sbjct: 356 IRDNDD---------ANALYVLMPIRV 373 >gi|119385559|ref|YP_916614.1| DNA polymerase III subunit beta [Paracoccus denitrificans PD1222] gi|119376154|gb|ABL70918.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222] Length = 372 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 230/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+D+++ + A ++ER+NTIP+ +VL++A + +A+ + EI PA Sbjct: 1 MKFSIERADLVKAVSQAQSVVERRNTIPILANVLIEAAPEGVSFRATDLDTEIVDRAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L DI RKL DGA + + G +++ G SNF L + P +FP Sbjct: 61 VERPGATTVSAGMLNDIARKLPDGALVQLSLDAASG-RLSVQAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F ++VL+ L +++ FA++ EE RYYLNG++ H+ E+ L VATDG Sbjct: 120 MSSSEYGANFSAPAAVLRRLFDKSKFAISNEETRYYLNGVYMHVAQTEDGPGLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK V E+ ++L ++ + VS+SE+++ +++++ Sbjct: 180 HRLARIDAPLPAGAEDMPGVIVPRKTVAELRKLLDDDEAEIAVSVSETKVRFATPTITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPSGNARKLEVDAGDFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + P++I FN KYL EI I + VF + S + Sbjct: 300 VNAPDAGAADEELPVAYADEPLEIGFNAKYLHEIASQIE-----RENAVFLFNGSGDAAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + +A YV+MPMR+ Sbjct: 355 IR---------EGGDTSAVYVVMPMRV 372 >gi|146309669|ref|YP_001174743.1| DNA polymerase III subunit beta [Enterobacter sp. 638] gi|145316545|gb|ABP58692.1| DNA polymerase III, beta subunit [Enterobacter sp. 638] Length = 366 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P +FP Sbjct: 61 QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRILVRSGRSRFSLSTLPAIDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPIGVTLPN-HSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S +++ +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366 >gi|126734081|ref|ZP_01749828.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2] gi|126716947|gb|EBA13811.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2] Length = 372 Score = 384 bits (988), Expect = e-105, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ A Sbjct: 1 MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDRASAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L +IVRKL DGA ++ ++ G + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVAAVTLNEIVRKLPDGALVTLTEDGASG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDSDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A M +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDGAADMAGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL+L DKL ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF ++S Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNTSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|83309736|ref|YP_420000.1| DNA polymerase III subunit beta [Magnetospirillum magneticum AMB-1] gi|82944577|dbj|BAE49441.1| DNA polymerase sliding clamp subunit [Magnetospirillum magneticum AMB-1] Length = 379 Score = 384 bits (988), Expect = e-104, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 225/387 (58%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ L H ++ER+ TIP+ +V L+ GLL + A+ +++I A+PA Sbjct: 8 MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 67 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T AH Y+IVRKL DG+Q+ + E G ++ + G S F L P +FP Sbjct: 68 VVRPGATTAPAHTFYEIVRKLPDGSQVEIEHDAESG-QLTLRSGRSKFSLACLPVEDFPV 126 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E ++F L+++ LK L++RT FA++TEE RYYLNGI+ H D L AVATDG Sbjct: 127 LSGGELPFTFSLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGVDVLRAVATDG 186 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + + A MP IIVPRK V EI +++ D + VSLSE+++ ++ Sbjct: 187 HRLARVEITLPSGAAGMPGIIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 246 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK L V+C + QAVDRVS +S+ + +A+KL+L ++ Sbjct: 247 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 306 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G A+E + Y P++I FN +YL++I+ + D F + + S Sbjct: 307 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----DTARFAMADAASPTV 361 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R A YVLMPMR+ Sbjct: 362 VREM---------TDGGAIYVLMPMRV 379 >gi|89069838|ref|ZP_01157173.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516] gi|89044639|gb|EAR50755.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516] Length = 372 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKFSIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGDGVQFRATDLDIEVVDRAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L +IVRKL DGA ++ ++ G + I G SNF L + P +FP Sbjct: 61 VERAGATTVAAVTLNEIVRKLPDGALVTLAEDGGSG-RLQIMAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ E + L VATDG Sbjct: 120 MASSEYATNFTADAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +MP +IVPRK VGE+ ++L + + VS+SE++I ++++ Sbjct: 180 HRLARIDAALPEGAEEMPGVIVPRKTVGELRKLLDDDEMQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N K L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPANNAKRLEVDASEFAKAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + +DI FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGNAEEELAVAYGDEKLDIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D +A YV+MPMR+ Sbjct: 355 MREGDD---------TSAVYVVMPMRV 372 >gi|254515868|ref|ZP_05127928.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3] gi|219675590|gb|EED31956.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3] Length = 367 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 210/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R +L+ L ++ER+ T+PV +VLL + L I + E+E+ G + Sbjct: 1 MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G IT+ A L DI + L DGA + + + + G S F L + P EFP Sbjct: 61 SEGDAGEITLPARKLADICKSLPDGADLEISVSD---GKATVRSGRSRFTLATLPAREFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L L+ L+ERT FAMA +++RYYLNG+++ + +L AVATDGH Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAG--RLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +I+PRK V E+ R++ + D V + L + + + + Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQNDDEDVTIILGSNHLRATTTEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P + DK ++ + T LRQA R +I+S+ + + V+L LS+ L + Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSNGSLEIVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ V Y+ ++I FN YLL+++ +S DE+ F L NSS + Sbjct: 296 NNPEQEQAEENLPVNYSGDSLEIGFNVGYLLDVLGVLSG-----DEIRFSLSDPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 351 EETD---------GGDSLYVVMPMRL 367 >gi|253987485|ref|YP_003038841.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica subsp. asymbiotica ATCC 43949] gi|253778935|emb|CAQ82095.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica] Length = 366 Score = 384 bits (987), Expect = e-104, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ + L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMMARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L DGA+IS + G + + G S F L + P ++FP Sbjct: 61 LPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I + S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + +EV L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 NA YV+MPMR+ Sbjct: 350 EDC---------ASHNAAYVVMPMRL 366 >gi|83950589|ref|ZP_00959322.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM] gi|83838488|gb|EAP77784.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM] Length = 372 Score = 383 bits (985), Expect = e-104, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKFSIERGILLKAVSQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS TVSA L++IVRKL DGA ++ + G + + G S+F L + P+ +FP Sbjct: 61 VERAGSTTVSAVTLHEIVRKLPDGALVTLTDDGAAG-RLAVEAGRSSFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MASSEYASNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDGDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L D+ + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPDGAGDMPGVIVPRKTVGELRKLLDDDDAVIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|260428831|ref|ZP_05782808.1| DNA polymerase III, beta subunit [Citreicella sp. SE45] gi|260419454|gb|EEX12707.1| DNA polymerase III, beta subunit [Citreicella sp. SE45] Length = 372 Score = 383 bits (984), Expect = e-104, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGNTVTFRATDLDIEVLDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA + E+ + ++ G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGALV-QLSEDGGAGRLTVTAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ HI +EE L VATDG Sbjct: 120 MASSEYATNFTAKAEVLRKLFDKSKFAISTEETRYYLNGVYMHIADSEEGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + + MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 HRLARIDAPLPSGAEAMPGVIVPRKTVGELRKLLDEDEMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + P++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDDPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + +A YV+MPMR+ Sbjct: 355 MR---------EGSDTSAVYVVMPMRV 372 >gi|326793324|ref|YP_004311144.1| DNA polymerase III subunit beta [Marinomonas mediterranea MMB-1] gi|326544088|gb|ADZ89308.1| DNA polymerase III, beta subunit [Marinomonas mediterranea MMB-1] Length = 365 Score = 383 bits (983), Expect = e-104, Method: Composition-based stats. Identities = 134/385 (34%), Positives = 214/385 (55%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L+ L ++ERK T+PV +VL++ D +L + S E+E+ G +P Sbjct: 1 MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQVLTLTGSDLEVELVGQVPLD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G ITV A L DI + L D A I F + + + I G S F L + P EFP+ Sbjct: 61 DCQEGRITVPARKLVDICKSLPDSAVIEFSLDEQ---KAIIRSGRSRFSLSTLPADEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + + +A S ++ L++RT FAMA +++RYYLNG+ F + + L++ VATDGHR Sbjct: 118 IQDMQGDLTVNVAQSSVRRLIDRTGFAMANQDVRYYLNGMLFEVADGQLRV--VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D + +IVPRK V E+ R+LS D V++ + + + I+ + + + Sbjct: 176 LATAIEDAQVS-GDLTQVIVPRKGVLELNRLLSDTDELVELKIGSNHVRATIDDYTFTSK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+DG+FP+Y VIP +N+K + + LRQ R SI+S+ + + V+L LS+ L + + Sbjct: 235 LVDGKFPDYHRVIPRNNEKMVIADRQELRQVFLRASILSNEKYRGVRLILSNGMLQVFAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A ES+ V Y M++ FN YLL+++ + + EV ++ SNSS I Sbjct: 295 NPEQEEAEESVLVQYQGDGMEVGFNVGYLLDVLGVVDAQ-----EVRIAMNDSNSSALIE 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EAQSHA---------AQYVVMPMRL 365 >gi|83944867|ref|ZP_00957233.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633] gi|83851649|gb|EAP89504.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633] Length = 372 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 154/387 (39%), Positives = 228/387 (58%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ +VL+ A+DG A+ ++EI AS Sbjct: 1 MKLTIERAILLKALGHVQAVVERRNTIPILSNVLINASDGFARFTATDLDMEIVEEAEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G IT AH LY+I RKL +G+Q++ + + +S G S F L P +FP Sbjct: 61 VEREGLITAPAHTLYEIARKLPEGSQVTLELGGDD-PRILLSAGRSRFNLPILPPGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ SF +S + L+++T FA++TEE RYYLNGI H E D + L AVATDG Sbjct: 120 MPSEDLAVSFTAPASEIARLIDKTKFAISTEETRYYLNGIHLHAAERDGRKTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE D+ MP++IVPRK + E+ R+L D V VS+SE +I + + ++ Sbjct: 180 HRLALAETDLPDGAMGMPAVIVPRKPIQELRRLLEDLDGDVDVSVSEGKIRFQLGAAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK +R++ QAVDRV+ +S + ++VKLSL+ ++ +T Sbjct: 240 SKLIDGTFPDYERVIPRGNDKVMRIDRAPFAQAVDRVATISQEKSRSVKLSLAPGQVTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NP+ G A E + Y+ M I FN +YLL++ I DE +F L S S Sbjct: 300 VNNPESGAASEELVADYSADEMTIGFNARYLLDVASQIEG-----DEAIFELADSGSPTR 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YVLMP+R+ Sbjct: 355 VTD---------SGDKDAEYVLMPLRV 372 >gi|23014790|ref|ZP_00054590.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 372 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 147/387 (37%), Positives = 225/387 (58%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ L H ++ER+ TIP+ +V L+ GLL + A+ +++I A+PA Sbjct: 1 MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T AH Y+IVRKL DG+Q+ + E G ++ + G S F L P +FP Sbjct: 61 VVRPGATTAPAHTFYEIVRKLPDGSQVEIEFDAESG-QLTLRSGRSKFSLACLPVEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + +SF L+++ LK L++RT FA++TEE RYYLNGI+ H D L AVATDG Sbjct: 120 LSGGDLPFSFTLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGIDVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + + A MP +IVPRK V EI +++ D + VSLSE+++ ++ Sbjct: 180 HRLARVEITLPSGAAGMPGVIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK L V+C + QAVDRVS +S+ + +A+KL+L ++ Sbjct: 240 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G A+E + Y P++I FN +YL++I+ + + F + + S Sbjct: 300 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----ETARFAMADAASPTV 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R A YVLMPMR+ Sbjct: 355 VREM---------TDGGAIYVLMPMRV 372 >gi|261346741|ref|ZP_05974385.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541] gi|282565141|gb|EFB70676.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541] Length = 366 Score = 382 bits (982), Expect = e-104, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L++ + E+E+ +P + Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALQLTGTDLEMEMMANVPLT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I ++ + + G S F L + P ++FP Sbjct: 61 REHEVGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F + L+ V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI ++ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMDIGQELP-SHSVIVPRKGVIELMRLLDGGDAPLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S + V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGGEMEIGFNVSYILDVLNTLKS-----ENVTLFLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 ED---------SASRSAVYVVMPMRL 366 >gi|87121028|ref|ZP_01076920.1| DNA polymerase III, beta chain [Marinomonas sp. MED121] gi|86163866|gb|EAQ65139.1| DNA polymerase III, beta chain [Marinomonas sp. MED121] Length = 365 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 132/385 (34%), Positives = 211/385 (54%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L+ L ++ERK T+PV +VLL+ D L + S E+E+ G I Sbjct: 1 MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLLEVKDNELTLTGSDLEVELVGHIQLD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G ITV A L DI + L D A I ++ T I G S F L + P EFP+ Sbjct: 61 ECQEGRITVPARKLMDICKSLPDSAVIELSVDD---TRAIIRSGRSRFTLSTLPADEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +A + ++ L+ERT FAMA +++RYYLNG+ F + + L++ V+TDGHR Sbjct: 118 IQDMQGDLSVVVAQNSVRRLIERTGFAMANQDVRYYLNGMLFEVADGQLRV--VSTDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D + +IVPRK V E+ R+LS D +V++ + + I + + + Sbjct: 176 LATAIEDAQVS-GDLTQVIVPRKGVLELNRLLSDTDETVELQIGANHIRAKVADYIFTSK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP +NDK + + LRQ R SI+S+ + + V+L L++ L + + Sbjct: 235 LVEGKFPDYHRVIPRNNDKIVIADRLELRQVFLRASILSNEKYRGVRLILTNGMLQVFAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A ES+ V Y +++ FN YLL+++ ++S EV L+ + +S + Sbjct: 295 NPEQEEAEESVLVQYQGDDLEVGFNVSYLLDVLGVVNSQ-----EVRISLNDATASALVE 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + A YV+MPMR+ Sbjct: 350 EADSHA---------AQYVVMPMRL 365 >gi|212712613|ref|ZP_03320741.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM 30120] gi|212684829|gb|EEB44357.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM 30120] Length = 366 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LL +G L++ + E+E+ +P + Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLHVKEGALQLTGTDLEMEMMANVPLT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TV A +DI R L +G++I ++ + + G S F L + P ++FP Sbjct: 61 REHEIGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S+LK L+E T F+MA +++RYYLNG+ F L+ V+TDGH Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGNMLR--TVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +DI ++ S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCSMDIGQELP-SHSVIVPRKGVMELMRLLDGGDALLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + S + V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVNYQGGEMEIGFNVSYILDVLNALKS-----ENVTLFLTDAVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 350 ED---------SASRSAVYVVMPMRL 366 >gi|284007064|emb|CBA72339.1| DNA polymerase III subunit beta [Arsenophonus nasoniae] Length = 366 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ER +L+ L + + T+P+ ++LLQ ++ +L + + E+E+ + Sbjct: 1 MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSENILSLTGTDLEVEMVAKVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITV A +DI R L DGA+I E G + + G S F L + P ++FP Sbjct: 61 QPGESGSITVPARKFFDIWRGLPDGAEIKVTLE---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + LK L+E T F+MA +++RYYLNG+ F ++L+ VATDGH Sbjct: 118 NLDDWQSEVEFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGQELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++I + S+IVPRK V E +R+L S D S+K+ + + I ++ + Sbjct: 176 RLAVCSLNIDKDLP-THSVIVPRKGVVEFMRLLDSSDESLKLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLTADCDKLKQAFSRAAILSNEKFRGVRLYISENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ ++ E ++V Y ++I FN Y+L++++ + ++V L SNSSV I Sbjct: 295 NNPEQEESEEIVDVNYQSPMIEIGFNVSYILDVLNTLKC-----EQVNLLLTDSNSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ A YV+MPMR+ Sbjct: 350 EDAATNA---------AAYVVMPMRL 366 >gi|114762141|ref|ZP_01441609.1| DNA polymerase III subunit beta [Pelagibaca bermudensis HTCC2601] gi|114545165|gb|EAU48168.1| DNA polymerase III subunit beta [Roseovarius sp. HTCC2601] Length = 372 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 147/387 (37%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGDTVTFRATDLDIEVLDRAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA + ++ + ++ G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGALV-QLADDSAAGRLTVTAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + L+ L +++ FA++TEE RYYLNG++ H++ EE L VATDG Sbjct: 120 MASSEYATNFSAKAETLRKLFDKSKFAISTEETRYYLNGVYMHVSDSEEGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDAPVPEGAEAMPGVIVPRKTVGELRKLLDDDDMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ T +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDATEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + P++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDEPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + +A YV+MPMR+ Sbjct: 355 MR---------EGSDTSAVYVVMPMRV 372 >gi|83591342|ref|YP_425094.1| DNA polymerase III subunit beta [Rhodospirillum rubrum ATCC 11170] gi|83574256|gb|ABC20807.1| DNA polymerase III, beta subunit [Rhodospirillum rubrum ATCC 11170] Length = 372 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 224/387 (57%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ +V ++ + + A+ ++EI + A+ Sbjct: 1 MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ T AH LYDIVRKL DG+Q+ + G ++ + G S F L P +FP+ Sbjct: 61 TLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDG-QLVLKAGRSRFSLSCLPVEDFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ +SF L ++ L+ L++RT FA++TEE RYYLNGI+ H E L AVATDG Sbjct: 120 LSAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA AE+ + A A MP +IVPRK VGE+ +++ + V LSE +I + + ++ Sbjct: 180 HRLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK L V+C QA DRVS +S+ + +A+K++++ + ++ Sbjct: 240 SKLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G A+E + Y ++I FN +YLL+I+ + V + S Sbjct: 300 ASSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEG-----GSVRLTFADAASPTV 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +A YVLMPMR+ Sbjct: 355 IRDV---------ADASAVYVLMPMRV 372 >gi|254461783|ref|ZP_05075199.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium HTCC2083] gi|206678372|gb|EDZ42859.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium HTCC2083] Length = 372 Score = 382 bits (981), Expect = e-104, Method: Composition-based stats. Identities = 154/387 (39%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + HA ++ER+NTIP+ +VL++A + +A+ +IE+ + A Sbjct: 1 MKISIERATLLKAVSHAQSVVERRNTIPILANVLIEAEGNDVRFRATDLDIEVVDKVEAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L +IVRKL DGAQ++ + G + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVSATTLNEIVRKLPDGAQVTLTDDGTSG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F +SVL+ L +++ FA++TEE RYYLNG++ HI+ E L VATDG Sbjct: 120 MATSEYSANFSAQASVLRRLFDKSKFAISTEETRYYLNGVYMHISDAEGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ ++MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPENASEMPGVIVPRKTVGELRKLLDEDDMQIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|146276061|ref|YP_001166220.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC 17025] gi|145554302|gb|ABP68915.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC 17025] Length = 372 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 231/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P +FP Sbjct: 61 VERPGATTVSAVMLHEIVRKLPDGALVG-LSEDAASGRLTVTAGRSVFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VL+ L ++ FA++TEE RYYLNG+F H+ EE L VATDG Sbjct: 120 MASSEYSSNFTAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + M +IVPRK V E+ ++L ++ +KVS+SE+++ ++M+ Sbjct: 180 HRLARIDAPLPEGAEGMAGVIVPRKTVNELRKLLDDDEAQIKVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTGNARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|163797311|ref|ZP_02191264.1| ApaG [alpha proteobacterium BAL199] gi|159177402|gb|EDP61958.1| ApaG [alpha proteobacterium BAL199] Length = 373 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 158/387 (40%), Positives = 239/387 (61%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT++R+ +L+ L H ++ER+NTIP+ +VLL+A DG L + A+ ++++ ++ S Sbjct: 1 MKITIDRAALLKPLAHVQSVVERRNTIPILANVLLRAADGTLSLTATDMDLDVVESVGCS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G TV AH LY+IVRKLQDG+++ + G + I G SNF L + P EFP+ Sbjct: 61 VDQPGQTTVPAHTLYEIVRKLQDGSEVELTAVGDSG-RMTIRAGRSNFSLPTLPMEEFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 + SF L+++ K L++RT FA++TEE RYYLNGIF H + L AVATDG Sbjct: 120 LSGDTLPTSFVLSAADAKTLIDRTRFAISTEETRYYLNGIFLHEAKAGDVAVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ + A MP++IVPRKAV EI +++ D V+VSLSE+++ ES ++ Sbjct: 180 HRLARVQMPLPTGAAGMPAVIVPRKAVQEIRKLIEETDGDVQVSLSENKLRFAFESSVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP NDK LRV + ++AVDRV+ +S+ + ++VKLSL+S L ++ Sbjct: 240 TKLIDGTFPDYERVIPTGNDKMLRVESSMFKRAVDRVATISTEKSRSVKLSLTSGTLTLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD +A E ++V Y ++I FN +YL++I D I + VF + + S Sbjct: 300 ANSPDNAQATEEVDVDYAAAAIEIGFNSRYLMDIADQIDE----GSKAVFAMADAASPTV 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D YVLMPMR+ Sbjct: 356 VTDESDD---------GTLYVLMPMRV 373 >gi|163745036|ref|ZP_02152396.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45] gi|161381854|gb|EDQ06263.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45] Length = 372 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ + A Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKVAAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA LL++IVRKL DGA I+ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVSATLLHEIVRKLPDGALINLTADTAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ HI E L VATDG Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHIADAESGKALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + ++ A+MP +IVPRK VGE+ ++L + + VS+SE++I ++++ Sbjct: 180 HRLARIDAEMPEGAAEMPGVIVPRKTVGELRKLLDDDEMEIAVSVSETKIRFATPGITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|290473096|ref|YP_003465957.1| DNA polymerase III subunit beta [Xenorhabdus bovienii SS-2004] gi|289172390|emb|CBJ79157.1| DNA polymerase III, beta-subunit [Xenorhabdus bovienii SS-2004] Length = 366 Score = 381 bits (980), Expect = e-104, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +ER +L+ L + + T+P+ ++LLQ + L + + E+E+ + Sbjct: 1 MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMKARVALT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A +DI R L DGA+IS + G + + G S F L + P S+FP Sbjct: 61 QPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ VATDGH Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++I + S+IVPRK V E++R+L DS +++ + + I ++ + Sbjct: 176 RLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + ++V L + SSV I Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVKI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 A YV+MPMR+ Sbjct: 350 EN---------SASQAATYVVMPMRL 366 >gi|54307246|ref|YP_128266.1| DNA polymerase III subunit beta [Photobacterium profundum SS9] gi|46911666|emb|CAG18464.1| Putative DNA polymerase III, beta chain [Photobacterium profundum SS9] Length = 366 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ +G L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L DGA+I+ E G + I G S + L + P ++FP Sbjct: 61 ADFEVGAVTVPSRKFLDICRGLPDGAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L + L++ T F+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIEDWQSDVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D+ AQ IIVPRK V E++R+L + ++ V + + S I + + + Sbjct: 176 RMAVCAIDL-AQELTTKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K + +C LR+A R +I+S+ + + V+++LS ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+S + Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 350 EDCANDE---------AMYVVMPIRL 366 >gi|300021541|ref|YP_003754152.1| DNA polymerase III subunit beta [Hyphomicrobium denitrificans ATCC 51888] gi|299523362|gb|ADJ21831.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans ATCC 51888] Length = 372 Score = 381 bits (979), Expect = e-104, Method: Composition-based stats. Identities = 155/387 (40%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ER ++L+ L H ++ER+ TIP+ +++L+A+ L KA+ E E++ ++ A Sbjct: 1 MRLEIERGELLKALSHVTSVVERRTTIPILSNIMLKASGETLMFKATDLEREVSESVGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++TV AH+L+DIVRKL DGA+I ++ E + I+ G S F LQ+ +FP Sbjct: 61 VSTPGTLTVPAHVLHDIVRKLPDGAEIEMKRDGEK-ERLTITSGHSRFSLQTLSAEDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 E + F + + LK L+++T FA++TEE RYYLNGIF H E L AVATDG Sbjct: 120 LAVGEIGHEFTIEAGDLKRLIDKTRFAISTEETRYYLNGIFLHPAETAGVKTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ + MP +IVPRK V E+ R+L + V V +S++++ I + ++ Sbjct: 180 HRLAQVELPLPKGAEGMPGVIVPRKTVHELARLLEDSSAKVNVGVSQTKVRFEIGPVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKE++V + + AVDRVS ++S R +AVKL+++ DKL +T Sbjct: 240 SKLIDGTFPDYSRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVAKDKLILT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NP+ G A E + V Y+ P++I FN +YLL+I D + S ++ F L S Sbjct: 300 VNNPEGGSATEEIPVGYSAGPLEIGFNARYLLDIADQLES-----EDARFLLADPGSPTM 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R NA YVLMPMR+ Sbjct: 355 VRD---------GGDGNALYVLMPMRV 372 >gi|152994045|ref|YP_001338880.1| DNA polymerase III subunit beta [Marinomonas sp. MWYL1] gi|150834969|gb|ABR68945.1| DNA polymerase III, beta subunit [Marinomonas sp. MWYL1] Length = 365 Score = 381 bits (979), Expect = e-103, Method: Composition-based stats. Identities = 134/385 (34%), Positives = 213/385 (55%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L+ L ++ERK T+PV +VL++ D LL + S E+E+ G +P Sbjct: 1 MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQLLTLTGSDLEVELVGHVPLD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G ITV A L DI + L D A I F +++ + I G S F L + P EFP+ Sbjct: 61 ECEEGRITVPARKLMDICKSLPDSAVIEFTLDDQ---KAVIRSGRSRFSLSTLPADEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + + +A + ++ L++RT FAMA +++RYYLNG+ + + L++ VATDGHR Sbjct: 118 IQDMQGDLTVSIAQNSVRRLIDRTGFAMANQDVRYYLNGMLLEVADGQLRV--VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D + +IVPRK V E+ R+L+ D V++++ + I + + + Sbjct: 176 LATAVEDAQVS-GDLTQVIVPRKGVLELNRLLNDTDEVVELTIGTNHIRAKVAEYVFTSK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+DG+FP+Y VIP +N+K + + LRQ R SI+S+ + + V+L LS+ L + + Sbjct: 235 LVDGKFPDYHRVIPRNNEKIVIADRLELRQVFLRASILSNEKYRGVRLILSNGMLQVFAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A ES+ V Y M++ FN YLL+++ + S EV L+ SNSS I Sbjct: 295 NPEQEEAEESVLVQYQGDNMEVGFNVGYLLDVLGVVDSQ-----EVRLSLNDSNSSALIE 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YV+MPMR+ Sbjct: 350 EAQSHA---------AQYVVMPMRL 365 >gi|209966326|ref|YP_002299241.1| DNA polymerase III subunit beta [Rhodospirillum centenum SW] gi|209959792|gb|ACJ00429.1| DNA polymerase III, beta subunit [Rhodospirillum centenum SW] Length = 374 Score = 381 bits (978), Expect = e-103, Method: Composition-based stats. Identities = 148/391 (37%), Positives = 230/391 (58%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ER+ +L LGH ++ER+NTIP+ +V+L+A +G L + A+ ++EI ++PA Sbjct: 1 MKITIERAALLRSLGHVQSVVERRNTIPILSNVMLRAENGELSLTATDMDLEIVESVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS T AH LYDI RKL DG+Q+ + G + + G S F L + P ++P+ Sbjct: 61 IARPGSATAPAHTLYDIARKLPDGSQVEL---DSTGDMLTLRSGRSQFKLGTLPVDDYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN------EEDLKLCAV 174 + + F L+++ LK L++RT FA++TEE RYYLNGIF H + E L AV Sbjct: 118 MSGGDMGHRFSLSAADLKALIDRTRFAISTEETRYYLNGIFLHASTARGAGGETPVLRAV 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRLA E+ + A +P +I+PRKAV E+ ++L ++V LS++++ ++ Sbjct: 178 ATDGHRLARVEMPLPEGAAGIPGVIIPRKAVLEVRKLLDEAADRIEVQLSDTKVRFAFDA 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++++ +LIDG FP+Y+ VIP NDK L V+ AVDRV+ +S+ + +AVKLSL Sbjct: 238 ITLTSKLIDGTFPDYERVIPTGNDKVLEVDPRLFAGAVDRVATISTEKSRAVKLSLDRGV 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ +P+ G A E + V Y+ ++I FN +YLL+I I + F + + Sbjct: 298 LTLSASSPEAGSATEELEVVYDAPALEIGFNSRYLLDITQQIEG-----EGARFTMADAG 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R +A YVLMPMR+ Sbjct: 353 SPTLVRDV---------ADASALYVLMPMRV 374 >gi|84514653|ref|ZP_01002017.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53] gi|84511704|gb|EAQ08157.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53] Length = 372 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 151/387 (39%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IEI PA Sbjct: 1 MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAQGDEVHFRATDLDIEIVDKAPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ TVSA L +IVRKL DGA ++ +E+ G + I G SNF L + P+ +FP Sbjct: 61 VDRAGATTVSAVTLNEIVRKLPDGALVTLTEESATG-RLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 +Y +F + VL+ L +++ FA++TEE RYYLNG++ H+ E L VATDG Sbjct: 120 MASSDYAANFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + ++ M +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAELPMGAENMAGVIVPRKTVGELRKLLDDDDMKIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDASEFARAVDRVATVSSERSRAVKLSLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD G A E + V Y++ ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNSPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAIYVVMPMRV 372 >gi|149912811|ref|ZP_01901345.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b] gi|149813217|gb|EDM73043.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b] Length = 372 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKLSIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A +L++IVRKL DGA ++ ++ + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVNAVMLHEIVRKLPDGALVT-LTDDSATGRLTVEAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VL L +++ FA++TEE RYYLNG++ H+ E L VATDG Sbjct: 120 MASSEYASNFSAPAPVLLRLFDKSKFAISTEETRYYLNGVYMHVADAEGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPIGAEDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAAEFAKAVDRVATVSSERSRAVKLTLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|307543591|ref|YP_003896070.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581] gi|307215615|emb|CBV40885.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581] Length = 367 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 203/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 MK ++ R +L L ++ER+ T+PV +VL+Q + + + E+E+ G + + Sbjct: 1 MKFSISREALLRPLTLVAGVVERRQTLPVLSNVLIQVEQDQVSLTGTDLEVELIGRTVAS 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD GS TV A L DI + L D A+I E+ + G S F L + P +EFP Sbjct: 61 QVDEAGSATVPARKLMDICKSLPDQAEIQLALED---NRAVLRSGRSRFTLSTLPVAEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L LK L++ T FAMA +++RYYLNG+ ++ AVATDGH Sbjct: 118 NIEDGQSSVELSLPRGTLKRLIDATSFAMAQQDVRYYLNGMLLEFGTNLVR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAVA Q+ +IVPRK + E++R+L + V ++L + I + + + Sbjct: 176 RLAVASRSAEIQVEPSQKLIVPRKGIMELVRLLDDGEDPVSLTLGSTHIRAHTGDFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK L T LRQ + R +I+S+ + + V+L+L L + Sbjct: 236 KLVDGKFPDYERVVPKGGDKVLIAERTELRQVLSRTAILSNEKYRGVRLNLEEGNLRVMA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ V Y M+I FN YL++++ + +D V L NSS + Sbjct: 296 NNPEQEEAEENVGVEYTGPAMEIGFNVGYLVDVLSVLD-----EDRVQLTLADPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 351 EEP---------GGGDALYVVMPMRL 367 >gi|119475237|ref|ZP_01615590.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2143] gi|119451440|gb|EAW32673.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2143] Length = 368 Score = 380 bits (977), Expect = e-103, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 211/387 (54%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +L+ L ++ER+ T+P+ +VLL+ L I + E+E+ G + Sbjct: 1 MKFVISREALLKPLNLVAGVVERRQTLPILSNVLLELEGNQLSITGTDLEVELVGRVVLD 60 Query: 61 V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G ITV A L DI + L DG++I F ++++ V I G S F L + S+F Sbjct: 61 QAPETGGEITVPARKLADICKSLPDGSEIEFTQDDQ---RVIIRSGRSRFTLSTLAASDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +E F + LK L++RT FAMA +++RYYLNG+ + + L++ VATDG Sbjct: 118 PNVEESPGSQDFTVKQGDLKRLIDRTSFAMAQQDVRYYLNGMLWEVQSGQLRV--VATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + + +I+PRK V E+ R++ + V++ + + I + + + Sbjct: 176 HRLALCTLATSIETTENLQVILPRKGVVELARLMMKESDDVRLVIGSNHIRATTDEYTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG+FP+Y V+P ++ K + + LRQA R +I+S+ + + V+L LS+D L + Sbjct: 236 SKLVDGKFPDYDRVLPKASTKTIFGSRDELRQAFSRTAILSNEKYRGVRLLLSNDTLQIV 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y ++I FN YLL+++ + + + L +NSS Sbjct: 296 ANNPEQEEAEEIVSVDYQGESLEIGFNVSYLLDVLGVLKG-----ETIKLSLADANSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ ++ YV+MPMR+ Sbjct: 351 LEESEE---------GDSMYVVMPMRL 368 >gi|56695075|ref|YP_165422.1| DNA polymerase III subunit beta [Ruegeria pomeroyi DSS-3] gi|56676812|gb|AAV93478.1| DNA polymerase III, beta subunit [Ruegeria pomeroyi DSS-3] Length = 372 Score = 380 bits (976), Expect = e-103, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGEGAQFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TVSA L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 IERAGATTVSATTLHEIVRKLPDGALVTLTADAAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MASSEYQSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPAGATDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ + +AVDRV+ +SS R +AVKL L DKL ++ Sbjct: 240 SKVIDGTFPDYTRVIPQANTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDKLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y++ ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDQSAVYVVMPMRV 372 >gi|226326919|ref|ZP_03802437.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198] gi|225204756|gb|EEG87110.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198] Length = 367 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 126/387 (32%), Positives = 214/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LL+ + L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMVARVNLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+IS + G + + G S F L + P S+FP Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISVELD---GDRLLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+ +L VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLAV +DI + S+IVPRK V E++R+L +SS+++ + + I ++ + Sbjct: 176 RLAVCSMDIGQSLPG-HSVIVPRKGVIELMRLLDGGGESSLQLQIGSNNIRAHVGDFIFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P + K + C L+QA R +I+S+ + + V+++L+S +L +T Sbjct: 235 SKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTSGQLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN YLL++++ + +EV L + SSV Sbjct: 295 ANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKC-----EEVKLLLTDAVSSVQ 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 350 VENVASSA---------AAYVVMPMRL 367 >gi|126460790|ref|YP_001041904.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC 17029] gi|332559820|ref|ZP_08414142.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N] gi|126102454|gb|ABN75132.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC 17029] gi|332277532|gb|EGJ22847.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N] Length = 372 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGALVG-LSEDPASGRLTVTAGRSVFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F+ + VL+ L ++ FA++TEE RYYLNG++ H+ EE L VATDG Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGPVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L + + VS+SE+++ ++M+ Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|311696594|gb|ADP99467.1| DNA polymerase III, beta chain [marine bacterium HP15] Length = 367 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R +L L ++E+K T+PV +VLL A D L + + E+E+ + P Sbjct: 1 MKLTISRESLLTPLQSIAGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARVTPV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G ITV A L DI R L D A + E G +++ G S+F L + P FP Sbjct: 61 HVDQPGRITVPARKLSDISRALGDEAPMELSLE---GDRLHLRCGASHFTLSTLPAEHFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++E+ + EL L +++ T FAMA +++RYYLNG+ ++++ ++ VATDGH Sbjct: 118 NVEDEDESFRLELPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A +++ ++ +IVPRK V E+ R+L ++ V + + ++ + + S + + Sbjct: 176 RLAMAHLELATNCPELRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y VIP DK + + L+ + R I+S I+ V+L+L+S++L + Sbjct: 236 KLIEGKFPDYNRVIPRGGDKIVLADRATLKNTLQRAGILSHENIRGVRLNLASNELQVFA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +++ V Y + I FN YL+++++ + +D+V L + NSS I Sbjct: 296 NNPDQEQAEDALPVDYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLSNPNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N YV+MPMR+ Sbjct: 351 EAQ---------NDNRCLYVVMPMRL 367 >gi|90413731|ref|ZP_01221719.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK] gi|90325200|gb|EAS41697.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK] Length = 366 Score = 379 bits (975), Expect = e-103, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ +G L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L D A+I+ E G + I G S + L + P ++FP Sbjct: 61 ADFEIGAVTVPSRKFLDICRGLPDSAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L + L++ T F+MA +++RYYLNG+ F + L+ +VATDGH Sbjct: 118 NIEDWQSEVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D+ ++A IIVPRK V E++R+L + ++ V + + S I + + + Sbjct: 176 RMAVCAIDLAQELA-TKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K + +C LR+A R +I+S+ + + V+++LS ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+S + Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 350 EDCANDE---------AMYVVMPIRL 366 >gi|94502202|ref|ZP_01308697.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65] gi|94425663|gb|EAT10676.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65] Length = 367 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T+ R +L+ L ++ER+ T+PV +VLL+ L + + E+E+ G+ Sbjct: 1 MKLTITREALLKPLQLVAGVVERRQTLPVLSNVLLEVKGDQLSLTGTDLELELIGSATLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ITV A L DI + L D + I +++ +V + G S F L S P +EFP Sbjct: 61 EPGVDGAITVPAKKLMDICKSLPDQSTIEISQDDH---KVQLQTGRSKFVLSSLPANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E + + L+ +++RT FAMA +++RYYLNG+ + ++L+ AVATDGH Sbjct: 118 NIDDIEAQAQVMVPQTQLRRIIDRTAFAMAQQDVRYYLNGMLIEVKPDELR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA V + IA +IVPRKAV E+ ++L +SSV++SLS + + + + + Sbjct: 176 RLATCGVPVELDIADRMQVIVPRKAVLELAKLLMDPESSVELSLSNNHVRAKVGDYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ VIP + +K L + LRQ R +I+S+ + + V+L L +D L + Sbjct: 236 KLVDGKFPDYERVIPRNGNKTLIADRQALRQVFQRTAILSNEKYRGVRLLLENDNLQVVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A ES+ V + ++I FN YL +++ + D++ L +NSS + Sbjct: 296 NNPEQEQAEESIGVEFQGEMLEIGFNVSYLQDVLSVLDG-----DDMKMTLADANSSAVM 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ YV+MPMR+ Sbjct: 351 EEVE---------GGDSLYVVMPMRL 367 >gi|110677617|ref|YP_680624.1| DNA polymerase III subunit beta [Roseobacter denitrificans OCh 114] gi|109453733|gb|ABG29938.1| DNA polymerase III, beta subunit [Roseobacter denitrificans OCh 114] Length = 372 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 240/387 (62%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVTFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA ++ ++ +G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSATTLHEIVRKLPDGALVTLTADSAIG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + + VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MATSEYQSNFSVKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADADGGHVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L + + ++ VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPEAANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372 >gi|77464921|ref|YP_354425.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides 2.4.1] gi|77389339|gb|ABA80524.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides 2.4.1] Length = 372 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGALVG-LSEDPASGRLTVTAGRSVFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F+ + VL+ L ++ FA++TEE RYYLNG++ H+ EE L VATDG Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGSVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L + + VS+SE+++ ++M+ Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|221640842|ref|YP_002527104.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides KD131] gi|221161623|gb|ACM02603.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides KD131] Length = 372 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ +G A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DGA + E+ + ++ G S F L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGALVG-LSEDPASGRLTVTAGRSVFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F+ + VL+ L ++ FA++TEE RYYLNG+F H+ EE L VATDG Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L + + VS+SE+++ ++M+ Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|92112138|ref|YP_572066.1| DNA polymerase III subunit beta [Chromohalobacter salexigens DSM 3043] gi|91795228|gb|ABE57367.1| DNA polymerase III, beta subunit [Chromohalobacter salexigens DSM 3043] Length = 367 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 202/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 M+ T+ R +L L ++ER+ T+PV +VLLQ D L + + E+E+ G P Sbjct: 1 MRFTITREALLRPLSLVAGVVERRQTLPVLSNVLLQVQDSQLALTGTDLEVELIGRTTPH 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD GS TV A L DI + L + I+F E + G S F L + P +EFP Sbjct: 61 HVDEPGSATVPARKLMDICKSLPEQTDITFTLEE---GRAILRAGRSRFTLSTLPVAEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + LA LK+L++ T FAMA +++RYYLNG+ ++ VATDGH Sbjct: 118 NIEGSQSDTTLTLARGTLKHLIDATSFAMAQQDVRYYLNGMLLEFGHHLVR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV ++ +IVPRK + E+ R+L D V++++ + + + + Sbjct: 176 RLAVCARSADVEVEPSQKLIVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y VIP DK + LRQ + R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGKFPDYDRVIPRGGDKVVIAERGELRQVLSRTAILSNEKYRGVRLNLEENNLRVTA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ + Y+ +++ FN YL++++ + + D V L NSS + Sbjct: 296 NNPEQEEAEENVAIEYDGGALEVGFNVGYLVDVLGVLDA-----DRVQMTLSDPNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 351 EEP---------GGGDAMYVVMPMRL 367 >gi|260574426|ref|ZP_05842430.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2] gi|259023322|gb|EEW26614.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2] Length = 372 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ L A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKALSQAQSVVERRNTIPILANVLIEAEGANVSFRATDLDIEVVDRAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL +GA +S E+ + I+ G S F L + P+ +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPEGALVS-LAEDGAAGRLTITAGRSTFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + +L+ L ++ FA++TEE RYYLNG++ H++ E L AVATDG Sbjct: 120 MANAEYASNFSAPAPLLRRLFDKAKFAISTEETRYYLNGVYLHVSTGESGPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK V E+ ++L ++ + VS+SE+++ L+++ Sbjct: 180 HRLARIDAPLPEGAAGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPVLTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|255261800|ref|ZP_05341142.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62] gi|255104135|gb|EET46809.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62] Length = 372 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ERS +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ PA Sbjct: 1 MKISIERSILLKAVAQAQSVVERRNTIPILANVLIEAEGDSATFRATDLDIEVVDKAPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L +IVRKL DGA ++ ++ + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVAAVTLNEIVRKLPDGALVT-LTDDSATGRLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADSDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ + M +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPDGASDMAGVIVPRKTVGELRKLLDDDDVQIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V YN+ ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEEIAVAYNDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|323493782|ref|ZP_08098900.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546] gi|323311916|gb|EGA65062.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546] Length = 366 Score = 379 bits (974), Expect = e-103, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D + I+F + G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDSVITFVLD---GDRVQVRSGRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ LVE+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++V + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQVQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|126730157|ref|ZP_01745969.1| DNA polymerase III subunit beta [Sagittula stellata E-37] gi|126709537|gb|EBA08591.1| DNA polymerase III subunit beta [Sagittula stellata E-37] Length = 372 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L + A ++ER+NTIP+ +VL++A + +A+ +IE+ A Sbjct: 1 MKISMERATLLRAVAQAQSVVERRNTIPILANVLIEAEGETVTFRATDLDIEVLDKAEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G TVSA L++IVRKL DGA + +E G + +S G SNF L + P+ +FP Sbjct: 61 VEKPGGTTVSAVTLHEIVRKLPDGALVVLAEEPGTG-RLTVSAGRSNFNLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ + D L VATDG Sbjct: 120 MASSEYGSNFTAKAEVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGQALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDAPLPDGAADMPGVIVPRKTVGEMRKLLDEDDMDIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|163733263|ref|ZP_02140707.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149] gi|161393798|gb|EDQ18123.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149] Length = 372 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 237/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VERAGATTVSATTLHEIVRKLPDGALVTLTADSATG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ E L VATDG Sbjct: 120 MATSEYQSNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADAEGGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L + + ++ VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPEDANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N ++L V+ + +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372 >gi|260774982|ref|ZP_05883882.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC BAA-450] gi|260609072|gb|EEX35231.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC BAA-450] Length = 366 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERNHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNMLSMTATDLEVELISRVALE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS+TV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++V + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQVQLGADFAQQ-QIIVPRKGVLELVKLLDAPEQPVTLQIGSSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQTTTKTLEAECDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASAMI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D A YV+MP+R+ Sbjct: 350 ENVDDD---------GAMYVVMPIRL 366 >gi|197334198|ref|YP_002154782.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11] gi|197315688|gb|ACH65135.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11] Length = 366 Score = 378 bits (972), Expect = e-103, Method: Composition-based stats. Identities = 117/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + ++P+ ++LLQ +G L + A+ E+E+ I Sbjct: 1 MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L D A I+ E G V + G S F L + P ++FP Sbjct: 61 GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L+ + L+ L+E T F+MA +++RYYLNG+ F +VATDGH Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGN--IFRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + + +++ + +I+PRK + E++R+L S D SV + S + + + + Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPDQSVTLQFGNSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K L +C LRQA R +I+S+ + + V+++L+++++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + ++N+S + Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 350 EDCANDE---------AQYVVMPIRL 366 >gi|121601944|ref|YP_989527.1| DNA polymerase III subunit beta [Bartonella bacilliformis KC583] gi|120614121|gb|ABM44722.1| DNA polymerase III, beta subunit [Bartonella bacilliformis KC583] Length = 373 Score = 378 bits (971), Expect = e-103, Method: Composition-based stats. Identities = 162/387 (41%), Positives = 245/387 (63%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T++R+ L+ LG R++ER+NT+P+ +VL+ A+ + +KA+ ++EIT Sbjct: 1 MRVTIDRNQFLKSLGCVHRVVERRNTVPILSNVLIDADSDGMRLKATDLDLEITEFSVPH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G ITV AHLLYDIVRKL DG +I + + +++ G +NF LQ FP+ +FP Sbjct: 61 IEQTGGITVPAHLLYDIVRKLPDGNEIILAVDADRPNTMSVISGFANFRLQGFPKMDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ + F L +S LK+L++ T FA++TEE RYYLNGI+FHI + LKL VATDGH Sbjct: 121 SLPGQFNFRFSLLASDLKHLLDCTQFAISTEETRYYLNGIYFHIVNDGALKLRLVATDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + MP +I+PRK VGE+ R+LS + D+ V + LSE++I ++ S+ ++ Sbjct: 181 RLAQVDMEAPSGSEGMPGVIIPRKTVGELQRLLSEEADNYVCIELSETKIRFSVGSVVLT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN + VDRVS +SS R +AVKL++ + +L Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLTVNRRDFSSTVDRVSTISSDRGRAVKLTIENGQLRFV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I +S DE+VF LD + + Sbjct: 301 VNNPDSGSAEDQLVADYASDPLEIGFNSRYLLDIAAQLSG-----DEIVFMLDEAGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + NA YVLMP+R+ Sbjct: 356 IRD---------SHDTNALYVLMPIRV 373 >gi|254486821|ref|ZP_05100026.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101] gi|214043690|gb|EEB84328.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101] Length = 372 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ PA Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TVSA L++IVRKL DGA I+ ++ G + + G SNF L + P +FP Sbjct: 61 IERAGATTVSATTLHEIVRKLPDGALITLTSDSAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ HI+E + L VATDG Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISESEGNKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAPMPEGADDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ ++ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|59710617|ref|YP_203393.1| DNA polymerase III subunit beta [Vibrio fischeri ES114] gi|59478718|gb|AAW84505.1| DNA polymerase III, beta subunit [Vibrio fischeri ES114] Length = 366 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + ++P+ ++LLQ +G L + A+ E+E+ I Sbjct: 1 MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L D A I+ E G V + G S F L + P ++FP Sbjct: 61 GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L+ + L+ L+E T F+MA +++RYYLNG+ F +VATDGH Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGN--IFRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + + +++ + +I+PRK + E++R+L S + SV + S + + + + Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K L +C LRQA R +I+S+ + + V+++L+++++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + ++N+S + Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 350 EDCANDE---------AQYVVMPIRL 366 >gi|254282661|ref|ZP_04957629.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B] gi|219678864|gb|EED35213.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B] Length = 365 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 209/386 (54%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M T+ R +++ L ++ER+ T+P+ +VLL+ LE+ + E+E+ G + A Sbjct: 1 MNFTIPRDALIKPLNLVAGVVERRQTLPILSNVLLRVEGNRLELTGTDLEVELLGRVDLA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L +G++I+F + + + G S F L + P ++FP Sbjct: 61 EPGEAGEITVPARKLVDICKSLPEGSEINFSVD---SGKATVKAGRSRFTLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E S L SVLK L++RT FAMA +++RYYLNG+ I +L VATDGH Sbjct: 118 TVESSEGEVSVSLPQSVLKRLIDRTGFAMAQQDVRYYLNGMLLEILGG--RLRMVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + S+I+PRK V E+ R+L D V + + + + + + Sbjct: 176 RLALCTAQEPVEAGD-ASVIIPRKGVLELARLLE-GDGPVTLVIGSNHVRAANLQFTFTS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y+ V+P S DK + + LRQA R +I+S+ + + V+L ++ D L +T Sbjct: 234 KLVDGKFPEYERVLPKSPDKSVVGDRQTLRQAFTRTAILSNEKYRGVRLKIADDTLEITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P+++ FN YLL+++ + D++V L + SS + Sbjct: 294 NNPEQEQAEEVVSVEFQGDPLEVGFNVSYLLDVLSVLG-----DEKVRLSLADAASSALL 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 349 EEAD---------GGDSLYVVMPMRL 365 >gi|323496928|ref|ZP_08101956.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326] gi|323318002|gb|EGA70985.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326] Length = 366 Score = 378 bits (970), Expect = e-102, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS+TV + DI R L D + I+F E G V + G S F L + P S+FP Sbjct: 61 GEFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEISLSQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNLRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLETGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ P++I FN Y+L++++ + ++ V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRCEK-----VRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|296445221|ref|ZP_06887181.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] gi|296257395|gb|EFH04462.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] Length = 371 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 172/387 (44%), Positives = 237/387 (61%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ER+ +L LGH R++ER+ TIP+ +VL L +KA+ ++EIT A Sbjct: 1 MKITIERAALLRALGHVHRVVERRTTIPILANVL-LDAADGLLLKATDLDLEITEKAAAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ T+ AH LYDIVRKL DGAQ+S E G + + G S F LQS PES+FP Sbjct: 60 IGQKGATTLPAHTLYDIVRKLPDGAQVSLEGTGEQGLFL-LRSGRSRFQLQSLPESDFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ + F+LA + LK L+ +T FA+++EE RYYLNGIF H E + L AVATDG Sbjct: 119 VTSGEFSHRFQLAPADLKKLILKTQFAISSEETRYYLNGIFLHSTEVEGHQLLRAVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E+ A A MP +I+PRKAV E+LR++ +V++ LS +++ + ++ Sbjct: 179 HRLARVELPAPAGAAGMPGVILPRKAVNEVLRLVEDAQGAVEIELSTNKMRFSFGETVLT 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L V + R+AVDRVS +SS R +AVKL+LS KL ++ Sbjct: 239 TKLIDGTFPDYGRVIPAGNDKRLTVERASFREAVDRVSTISSERGRAVKLALSEGKLVLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A+E + Y+ P+DI FN +YLL+I D + S D +FRL S Sbjct: 299 VTNPDQGSAVEEIEADYDGPPIDIGFNSRYLLDIADQLDS-----DTALFRLADPGSPTL 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D +A YVLMPMR+ Sbjct: 354 IQDRD---------GASALYVLMPMRV 371 >gi|254439754|ref|ZP_05053248.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307] gi|198255200|gb|EDY79514.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307] Length = 372 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A+ +A+ +IE+ A Sbjct: 1 MKISIERASLLKAVAQAQSVVERRNTIPILANVLIEASGDEATFRATDLDIEVVDKATAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L +IVRKL DGA ++ ++ + I G SNF L + P+ +FP Sbjct: 61 VERAGATTVSAVTLNEIVRKLPDGALVT-LTDDSASGRLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 +Y +F + VL+ L +++ FA++TEE RYYLNG++ H++E D L VATDG Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + M +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDDMMIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N +++ V+ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E ++V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372 >gi|37678196|ref|NP_932805.1| DNA polymerase III subunit beta [Vibrio vulnificus YJ016] gi|37196935|dbj|BAC92776.1| DNA polymerase III, beta chain [Vibrio vulnificus YJ016] Length = 366 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + + T+P+ ++L+ +G L + A+ E+E+ + Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAPLSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S + Sbjct: 295 NNPEQEEAEEMLDVSFDGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|262273131|ref|ZP_06050948.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886] gi|262222887|gb|EEY74195.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886] Length = 366 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R L+ L + + T+P+ ++LL+ G L + + E+E+ +P Sbjct: 1 MKFTVTRDQFLKPLQQVSGALGGRPTLPILGNILLKVESGQLSMTCTDLEVELIANLPLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++TV + DI R L D A ISF E G I G S F L + P ++FP Sbjct: 61 SEAQEGAVTVPSRKFLDICRGLPDSASISFSLE---GDRAVIRSGRSRFTLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L L+ L+E T F+MA +++RY+LNG+ E L +VATDGH Sbjct: 118 NIEDWQSTVEFTLPQGKLRQLMESTAFSMANQDVRYFLNGMLLET--EGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + ++A +IVPRK V E++R+L + D+ V + + + I + + Sbjct: 176 RMAVGTTLLDNELA-AQQVIVPRKGVTELMRMLDNPDAPVTIQIGSANIRALVNQFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K + C +LRQA R +I+S+ + + V+L+LS+ +L ++ Sbjct: 235 KLVDGRFPDYRRVLPQSSNKIMEAGCDDLRQAFSRAAILSNEKFRGVRLNLSAGQLRISA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A E ++V Y+ ++I FN Y+L++++ + S ++V F + +S + Sbjct: 295 HNPEQEEAEEFVDVNYDGDDLEIGFNVSYVLDVLNTLKS-----EQVRFSMTDGTASTLV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D +A YV+MP+R+ Sbjct: 350 EDCNND---------DAMYVVMPIRL 366 >gi|83855143|ref|ZP_00948673.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1] gi|83941666|ref|ZP_00954128.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36] gi|83842986|gb|EAP82153.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1] gi|83847486|gb|EAP85361.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36] Length = 372 Score = 377 bits (969), Expect = e-102, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 236/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER+ +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ A Sbjct: 1 MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAAAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DGA IS ++ G + + G SNF L + P +FP Sbjct: 61 VERAGATTVSATTLHEIVRKLPDGALISLTADSAAG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 EY +F+ + VL+ L +++ FA++TEE RYYLNG++ HI++ + L VATDG Sbjct: 120 MATSEYQSNFKAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISDSEGSKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A+MP +IVPRK VGE+ ++L D + VS+SE++I ++++ Sbjct: 180 HRLARIDAPMPEGAAEMPGVIVPRKTVGELRKLLDDDDMEIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N +++ V+ ++ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N ++A YV+MPMR+ Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372 >gi|294010896|ref|YP_003544356.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S] gi|292674226|dbj|BAI95744.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S] Length = 370 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 150/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A+ DG +++ A+ +++I ++ A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQIVESVSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ T+SAH L+DI RKL +G+Q+S ++ I G + F L + P +FP Sbjct: 61 QVEQPGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178 E + SFEL + LK ++++T FA++TEE RYYLNGI+FH++++ L A ATDG Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA V MP IIVPRK +GE+ ++L D SV++SLS S+I + S ++ Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVDGSVQISLSASKIRFGLGSAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDK L+++ + + VDRV+ +++ + +AVK++L DK+ ++ Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + + DI FN +YLL+I+ I SD V L + + Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDSDL-----VELHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +D++ A YVLMPMR+ Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370 >gi|126724506|ref|ZP_01740349.1| DNA polymerase III subunit beta [Rhodobacterales bacterium HTCC2150] gi|126705670|gb|EBA04760.1| DNA polymerase III subunit beta [Rhodobacterales bacterium HTCC2150] Length = 372 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 153/387 (39%), Positives = 234/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ +G A ++ER+NTIP+ +VL++A+ + +A+ +IE+ A Sbjct: 1 MKISIERATLLKAVGQAQSVVERRNTIPILANVLIEADANSVSFRATDLDIEVVDKTVAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ TVSA L++IVRKL DGA + + G + + G SNF L + P +FP Sbjct: 61 VDRPGATTVSAVTLHEIVRKLPDGALVQLTDDGSSG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + S VL+ L +++ FA++TEE RYYLNG++ H+++ D L VATDG Sbjct: 120 MANAEYGANFSIESKVLRRLFDKSKFAISTEETRYYLNGVYMHVSDADGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ A MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 HRLARIDADLPAGAETMPGVIVPRKTVGELRKLLDDDDVKIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELAVAYGDDRLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N A YV+MPMR+ Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372 >gi|254507273|ref|ZP_05119409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16] gi|219549733|gb|EED26722.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16] Length = 366 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I E L +VATDGH Sbjct: 118 NIEDWQSEVEISLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTALGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNVRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ P++I FN Y+L++++ + ++ V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRCEK-----VRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS A YV+MP+R+ Sbjct: 350 ENAEDDS---------AMYVVMPIRL 366 >gi|294675559|ref|YP_003576174.1| DNA polymerase III subunit beta [Rhodobacter capsulatus SB 1003] gi|294474379|gb|ADE83767.1| DNA polymerase III, beta subunit [Rhodobacter capsulatus SB 1003] Length = 372 Score = 377 bits (968), Expect = e-102, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA +L++IVRKL DG+ + ++ +++ G S+F L + P +FP Sbjct: 61 VERAGATTVSAVMLHEIVRKLPDGSLV-QLSDDAAAGRLSVMAGRSSFNLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F + VLK L +++ FA++TEE RYYLNG++ H+ E+ L VATDG Sbjct: 120 MASSEYTANFAAKAGVLKRLFDKSKFAISTEETRYYLNGVYMHVATGEDGPALRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + MP +IVPRK V E+ ++L ++ + VS+SE+++ ++++ Sbjct: 180 HRLARIDAVLPEGANGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKLSL D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPMGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDAGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372 >gi|218673040|ref|ZP_03522709.1| DNA polymerase III subunit beta [Rhizobium etli GR56] Length = 361 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 179/376 (47%), Positives = 250/376 (66%), Gaps = 17/376 (4%) Query: 12 ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71 + L H R++ER+NTIP+ +VLL+A+ L++KA+ ++EIT A PASV+ G+ TV A Sbjct: 1 KSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAGATTVPA 60 Query: 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131 HLLYDIVRKL DG+++ + G+ + + G S F LQ PES+FP + +SF+ Sbjct: 61 HLLYDIVRKLSDGSEVLLATSPDGGS-MTVQSGRSKFSLQCLPESDFPDLTAGTFTHSFK 119 Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDGHRLAVAEVDIV 189 L +S LK L++RT FA++TEE RYYLNGIFFH E +LKL AVATDGHRLA A+VD Sbjct: 120 LKASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLARADVDAP 179 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 + MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ +LIDG FP+Y Sbjct: 180 SGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDY 239 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309 Q VIP NDKE+RV+CT+ QAVDRVS +SS R +AVKL+LS +L +TV+NPD G A E Sbjct: 240 QRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTVNNPDSGSATE 299 Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 + V Y+ M+I FN KYLL+I +S +E +F L + S IR D Sbjct: 300 EVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTLIRDTAGD---- 350 Query: 370 KDNKVNAFYVLMPMRI 385 +A YVLMPMR+ Sbjct: 351 -----DALYVLMPMRV 361 >gi|94495788|ref|ZP_01302367.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58] gi|94424480|gb|EAT09502.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58] Length = 370 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 233/387 (60%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A+ DG +++ A+ ++++ +I A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQVVESISA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ T+SAH L+DI RKL +G+Q+S + ++ I G + F L + P +FP Sbjct: 61 QVEQPGATTISAHTLFDIARKLPEGSQVSLQAAD---GKMLIQAGRARFNLSTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178 E + FEL + LK ++++T FA++TEE RYYLNGI+FH++EE L A ATDG Sbjct: 118 VIAEGDLPTQFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSEEGQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA V MP IIVPRK +GE+ ++L + SV++SLS S+I + S ++ Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK L+++ + VDRV+ +++ + +AVK++L D++ ++ Sbjct: 238 SKLIDGTFPDYSRVIPTGNDKLLKIDPRSFEDGVDRVATIATEKTRAVKMTLDKDRITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + + DI FN +YLL+I+ I SD V L + + Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDSDL-----VELHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D A YVLMPMR+ Sbjct: 353 IRENDASP---------ALYVLMPMRV 370 >gi|229524914|ref|ZP_04414319.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis VL426] gi|229338495|gb|EEO03512.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis VL426] Length = 366 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ + + +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D+V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----DQVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|288959567|ref|YP_003449908.1| DNA polymerase III subunit beta [Azospirillum sp. B510] gi|288911875|dbj|BAI73364.1| DNA polymerase III subunit beta [Azospirillum sp. B510] Length = 376 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 150/391 (38%), Positives = 226/391 (57%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ER+ +L LGH ++ER+NTIP+ +VLL+A DG L + A+ ++EI +PA+ Sbjct: 1 MNITIERAALLRSLGHVQSVVERRNTIPILSNVLLRAGDGELSLAATDMDLEIVETVPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G T AH L+DIVRKL DG+Q+ GT + + G S F L P +FP Sbjct: 61 VGRPGGTTAPAHTLFDIVRKLPDGSQVE-LDIGGDGTILTLRAGRSQFKLSCLPVEDFPQ 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE------EDLKLCAV 174 + ++F + ++ L+ L++RT FA++TEE RYYLNGI+ H + E L AV Sbjct: 120 LSSGDLKHNFSVPAADLRGLIDRTRFAISTEETRYYLNGIYLHAAKSKMGGLETPVLRAV 179 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRLA E+ + +P +I+PRK V EI +++ +++S+S+++I +S Sbjct: 180 ATDGHRLARVEMPLPDGAEGIPGVIIPRKTVTEIRKLVDEAADRIELSMSDNKIRFGFDS 239 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + ++ +LIDG FP+Y+ VIP NDK + V+ AVDRV+ +S+ + +AVKLSL Sbjct: 240 VVVTSKLIDGTFPDYERVIPVGNDKVMEVDAKLFAAAVDRVATISTEKSRAVKLSLVRGA 299 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ +P+ G A E + V Y E P++I FN +YLL+I I + F L + Sbjct: 300 LTLSATSPESGSATEELEVNYAEAPLEIGFNSRYLLDITQQIEG-----EGAQFTLADAA 354 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S IR + A YVLMPMR+ Sbjct: 355 SPTIIRDVADST---------ALYVLMPMRV 376 >gi|121587274|ref|ZP_01677047.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80] gi|261213262|ref|ZP_05927544.1| DNA polymerase III beta subunit [Vibrio sp. RC341] gi|121548520|gb|EAX58576.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80] gi|260837536|gb|EEX64239.1| DNA polymerase III beta subunit [Vibrio sp. RC341] Length = 366 Score = 376 bits (967), Expect = e-102, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ D L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEDNQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|260771048|ref|ZP_05879976.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972] gi|260613937|gb|EEX39128.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972] Length = 366 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS ++ L + + T+P+ ++LL+ D L + A+ E+E+ + Sbjct: 1 MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A DI R L D A I+ E G V + G S F L + P S+FP Sbjct: 61 GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ ++ A A IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNLRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + +K L+ C LRQA R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|254451638|ref|ZP_05065075.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238] gi|198266044|gb|EDY90314.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238] Length = 372 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 145/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L+ + A ++ER+NTIP+ +VL++A+ +A+ +IE+ A Sbjct: 1 MKLSIERASLLKAVAQAQSVVERRNTIPILANVLIEASGAEATFRATDLDIEVVDKATAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS TVSA L +IVRKL DGA ++ E+ + I G SNF L + P+ +FP Sbjct: 61 VERAGSTTVSAVTLNEIVRKLPDGALVT-LTEDSASGRLTIEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 +Y +F + VL+ L +++ FA++TEE RYYLNG++ H++E D L VATDG Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + M +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDEMMIAVSVSETKVRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +N +++ V+ +AVDRV+ +SS R +AVKL L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E ++V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372 >gi|261250638|ref|ZP_05943213.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891] gi|260939207|gb|EEX95194.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891] Length = 366 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ LVE+T F+MA +++RYYLNG+ F I E L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEI--EGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSTSKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----ETVRISMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 350 ENAADDS---------AMYVVMPIRL 366 >gi|221135256|ref|ZP_03561559.1| DNA polymerase III, beta subunit [Glaciecola sp. HTCC2999] Length = 368 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 216/387 (55%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 MK T+ R L+ L IER++T+P+ ++LL +G+L + + E+E+ ++ Sbjct: 1 MKFTISREQFLQPLQLVSGAIERRHTLPILSNILLVVKEGVLTLTGTDLEVELISHLSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A G ITV A L DI R L DG I+F + GT+ I G + L + S++ Sbjct: 61 ADSYEDGEITVPAKKLVDICRGLSDGNDITFQVD---GTKATIRSGRGRYTLSTLSASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + F ++ + LK+L++ T FAMA +++RYYLNG+ + +++ VATDG Sbjct: 118 PNLEDWQADVEFVISQNDLKHLIDSTSFAMAQQDVRYYLNGMSLETEDNNIR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + + +I+PRK V EI R++ + D+SVKV + + I + + Sbjct: 176 HRLALCNLAYTTETLPVRQVIIPRKGVLEINRLIEANDNSVKVKIGSNHISVKSSGFVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+++ V+P K + N +++A R SI+S+ + + V+L+LS+ +L +T Sbjct: 236 SKLVDGRFPDHRRVLPKETTKAVTANKDVMKKAFSRASILSNEKFRGVRLNLSNGELKIT 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y ++I FN YL+++++ + + DEV F L S++S Sbjct: 296 ANNPEQEEAEEIVDVNYQGEELEIGFNVAYLIDVMNALKT-----DEVKFNLSDSSASAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + A YV+MPMR+ Sbjct: 351 IEDATNST---------ALYVIMPMRL 368 >gi|28896786|ref|NP_796391.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus RIMD 2210633] gi|260363485|ref|ZP_05776318.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030] gi|260876544|ref|ZP_05888899.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034] gi|260901415|ref|ZP_05909810.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037] gi|28804994|dbj|BAC58275.1| DNA polymerase III, beta chain [Vibrio parahaemolyticus RIMD 2210633] gi|308090394|gb|EFO40089.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034] gi|308107195|gb|EFO44735.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037] gi|308113560|gb|EFO51100.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030] gi|328471239|gb|EGF42141.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus 10329] Length = 366 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + ++ V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRCEK-----VQVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|269965277|ref|ZP_06179398.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B] gi|269830078|gb|EEZ84306.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B] Length = 366 Score = 376 bits (966), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVSFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|320157815|ref|YP_004190194.1| DNA polymerase III subunit beta [Vibrio vulnificus MO6-24/O] gi|319933127|gb|ADV87991.1| DNA polymerase III beta subunit [Vibrio vulnificus MO6-24/O] Length = 366 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + + T+P+ ++L+ +G L + A+ E+E+ + Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I E L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + ++V + +N+S + Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|192362292|ref|YP_001980526.1| DNA polymerase III subunit beta [Cellvibrio japonicus Ueda107] gi|190688457|gb|ACE86135.1| DNA polymerase III, beta subunit [Cellvibrio japonicus Ueda107] Length = 367 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R +L+ L ++ER+ T+PV +VL+Q L + + E+EI G + Sbjct: 1 MKFAVSREALLKPLQLVAGVVERRQTLPVLSNVLIQLEGDQLSLTGTDLEVEIIGRLTLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI R L DG+ I FF E + + G S F L + P S+FP Sbjct: 61 QAGQSGEITVPARKLVDICRSLPDGSTIEFFLEE---NRILVKSGRSRFTLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F A + +K L+ERT FAMA +++RYYLNG+ + + ++ L++ VATDGH Sbjct: 118 NVEDAPGNLRFSCAQAEVKRLIERTAFAMAQQDVRYYLNGMLWEVRQDHLRV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+ I + I+PRK V E+ R+L + V+V LS + I + + + Sbjct: 176 RMAMCTRAIAVNTDDVVQAILPRKGVLELSRLLDDSSAQVEVVLSANHIRVTSVDYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y+ V+P +K + + L+QA R +I+S+ + + V+L LS+ L + Sbjct: 236 KLVDGKFPEYERVLPRGGNKVVIGSRLELKQAFARTAILSNEKYRGVRLLLSNGVLTIVA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN YL ++ + IS ++ + L +NSS + Sbjct: 296 NNPEQEEAEEQVTVDYTGESLEIGFNVSYLQDVANVIS-----NENIKITLLDANSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ YV+MPMR+ Sbjct: 351 EEPEN---------SDSLYVVMPMRL 367 >gi|254225545|ref|ZP_04919154.1| DNA polymerase III, beta chain [Vibrio cholerae V51] gi|125621865|gb|EAZ50190.1| DNA polymerase III, beta chain [Vibrio cholerae V51] Length = 366 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + + V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|319406518|emb|CBI80160.1| DNA polymerase III, beta chain [Bartonella sp. 1-1C] Length = 373 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 159/387 (41%), Positives = 246/387 (63%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ RS +L+ L RI+ER++ IP+ +VL+ +DG +++KA+ ++EI + + Sbjct: 1 MRITIGRSQLLKSLSRVHRIVERRSAIPILSNVLIDTSDGRMQLKATDLDLEIIESSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D + + + + ++I+ G +NF LQ P+ +FP Sbjct: 61 IEQGGAITVPAHLLYDIVRKLPDDSNVILEVNEDQASAMSITSGCTNFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FH+ ++D LKL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIDDDILKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ ++ Sbjct: 181 RLAQVDIEAPSGVDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L VN + AVDRVS +SS R +AVKL++ + + Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLIVNRQDFSAAVDRVSTISSDRGRAVKLTIEKGVVKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I +SS DE++F S + Sbjct: 301 VNNPDSGSAKDQLVANYVFDPLEIGFNSRYLLDIAAQLSS-----DEMIFMFADSGAPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG D NA YVLMP+R+ Sbjct: 356 IRGNDD---------KNALYVLMPIRV 373 >gi|262392782|ref|YP_003284636.1| DNA polymerase III subunit beta [Vibrio sp. Ex25] gi|262336376|gb|ACY50171.1| DNA polymerase III beta subunit [Vibrio sp. Ex25] Length = 366 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|159045914|ref|YP_001534708.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12] gi|157913674|gb|ABV95107.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12] Length = 372 Score = 376 bits (965), Expect = e-102, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 235/387 (60%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L + A ++ER+NTIP+ +VL++A + +A+ +IE+ + A Sbjct: 1 MKISIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV A L++IVRKL DGA ++ + G + +S G SNF L + P +FP Sbjct: 61 VERAGATTVPAVTLHEIVRKLPDGALVALTHDTAKG-RLEVSAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 EY +F + VL+ L +++ FA++TEE RYYLNG++ H+ + + L VATDG Sbjct: 120 MTTTEYTCNFAAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGRSLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + D+ MP +IVPRK VGE+ ++L ++ + VS+SE++I ++++ Sbjct: 180 HRLARIDADLPDAAEGMPGVIVPRKTVGELRKLLEDDEAQIAVSVSETKIRFATPEITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP SN ++L V+ + +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPVSNSRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +S+ Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAADPTM 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + + +A YV+MPMR+ Sbjct: 355 MR---------EGSDSSAIYVVMPMRV 372 >gi|315178625|gb|ADT85539.1| DNA polymerase III, beta chain [Vibrio furnissii NCTC 11218] Length = 366 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS ++ L + + T+P+ ++LL+ D L + A+ E+E+ + Sbjct: 1 MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ TV A DI R L D A I+ E G V + G S F L + P S+FP Sbjct: 61 GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ ++ A A IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDALEQPVVLQIGSSNLRAEVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + +K L+ C LRQA R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + D V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|153802490|ref|ZP_01957076.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3] gi|229530201|ref|ZP_04419590.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)] gi|262402081|ref|ZP_06078645.1| DNA polymerase III beta subunit [Vibrio sp. RC586] gi|124121960|gb|EAY40703.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3] gi|229332334|gb|EEN97821.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)] gi|262351727|gb|EEZ00859.1| DNA polymerase III beta subunit [Vibrio sp. RC586] gi|327482926|gb|AEA77333.1| DNA polymerase III beta subunit [Vibrio cholerae LMA3894-4] Length = 366 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|330500916|ref|YP_004377785.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01] gi|328915202|gb|AEB56033.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01] Length = 367 Score = 375 bits (964), Expect = e-102, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 212/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L A I +++ ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L + L+ L+ERT FAMA +++RYYLNG+ + L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGLLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ Q +IVPRK + E+ R+L+ +D+ V + L + I N + + Sbjct: 176 RLAMCSMEASIQQDGKHQVIVPRKGILELARLLTEQDAEVSIVLGQHHIRANTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L+L+ L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLADGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ + + ++V L SNSS + Sbjct: 296 NNPEQEEAEEEIVVDYNGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QEADND---------DSAYVVMPMRL 367 >gi|89092265|ref|ZP_01165219.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92] gi|89083353|gb|EAR62571.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92] Length = 367 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +++ L ++ER+ T+PV ++LL A L + + E+E+ G + Sbjct: 1 MKFVISREALIKPLQLVAGVVERRQTLPVLSNILLVAEGDQLSMTGTDLEVELVGRVTLD 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS+TV A L DI + L D A+I G ++ I G S F L + P +EFP Sbjct: 61 EPAEAGSVTVPARKLMDICKSLPDSARIELTL---TGQKMVIKAGRSRFTLSTLPAAEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+NL+++T F+MA +++RYYLNG+ I L+ +V+TDGH Sbjct: 118 NVEDSPETLELSMVQHQLRNLIDKTGFSMAQQDVRYYLNGMLLEIANGQLR--SVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + D+ A+ IIVPRK + E+ R+L + + +++ + S I ++ + + Sbjct: 176 RLATSVTDVEAEDGMQHQIIVPRKGILELARLLQNGEEELRLVIGASHIRAHVGDFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ VIP + DK L + LRQ + R++I+S+ + + V+LSLSS L + Sbjct: 236 KLVDGKFPDYERVIPKNGDKILLSDRMELRQVLSRIAILSNEKYRGVRLSLSSGYLQVMA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E++ V Y +++ FN YLL+ + ++SD V L SNSS + Sbjct: 296 NNPEQEEAEETLAVDYEGETLEVGFNVNYLLDCLSILNSDV-----VRLTLSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D++ + YV+MPMR+ Sbjct: 351 EGFDEE---------GSVYVVMPMRM 367 >gi|153212930|ref|ZP_01948524.1| DNA polymerase III, beta chain [Vibrio cholerae 1587] gi|229520185|ref|ZP_04409612.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80] gi|254291126|ref|ZP_04961923.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226] gi|124116156|gb|EAY34976.1| DNA polymerase III, beta chain [Vibrio cholerae 1587] gi|150422971|gb|EDN14921.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226] gi|229342779|gb|EEO07770.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80] Length = 366 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|330447268|ref|ZP_08310918.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] gi|328491459|dbj|GAA05415.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp. mandapamensis svers.1.1.] Length = 366 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 114/386 (29%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALD 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++TV + DI R L A IS E G V I G S + L + P ++FP Sbjct: 61 GEFESGAVTVPSRKFLDICRGLPSSASISVSYE---GDRVLIRSGRSRYTLTTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L ++ L++ T F+MA +++RYYLNG+ F + + L+ +VATDGH Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV ++ ++ IIVPRK V E++R+ + ++ V + + S I + + + Sbjct: 176 RMAVCAINTGHELP-TKQIIVPRKGVLELVRLFDNPEAEVNIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P ++ K + C +R A R +I+S+ + + V+++LS+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEIRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+ I Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D A YV+MP+R+ Sbjct: 350 EDSNNDE---------AMYVVMPIRL 366 >gi|114568556|ref|YP_755236.1| DNA polymerase III subunit beta [Maricaulis maris MCS10] gi|114339018|gb|ABI64298.1| DNA polymerase III, beta subunit [Maricaulis maris MCS10] Length = 372 Score = 375 bits (963), Expect = e-102, Method: Composition-based stats. Identities = 148/387 (38%), Positives = 222/387 (57%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++E++NTIP+ +VL+ A A+ +IEI AS Sbjct: 1 MKLTIERATLLKALGHVQAVVEKRNTIPILSNVLISAGPDGASFAATDLDIEILETTDAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G +T AH LYDI RKL DGA ++ + N + + G S+F L S P +FP Sbjct: 61 CDGEGLVTAPAHTLYDITRKLPDGADVT-LEMNGSDPRLTLKAGRSSFSLPSLPPGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E+ + F++ + L L+++T FA++TEE RYYLNGI H ++D + L AVATDG Sbjct: 120 MPTEDLEHRFQVPARELARLIDKTRFAISTEETRYYLNGIHLHAADQDGRKTLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+AEVD+ MP +IVPRK V E+ R+L D V+VS+SE +I + ++ Sbjct: 180 VRLALAEVDLPDGADGMPGVIVPRKTVQEVKRLLEDADDDVEVSVSEGKIRFRLGRAVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ VIP N + + V +AVDRV+ +S + ++VKLSL +D L + Sbjct: 240 SKLIDGAFPDYERVIPRGNTRLMSVENKRFAEAVDRVATISVEKSRSVKLSLGADALTLA 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NP+ G+A E + V Y++ I FN +Y+L++ I DE F + S Sbjct: 300 VNNPESGQAEEELAVSYSDEGFAIGFNARYMLDVASQIEG-----DEARFHFADAASPAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YVLMP+R+ Sbjct: 355 VTD---------SGDPDALYVLMPLRV 372 >gi|307295044|ref|ZP_07574886.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1] gi|306879518|gb|EFN10736.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1] Length = 370 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 149/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A+ DG +++ A+ +++I ++ A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASSDGAIKLMATDLDLQIVESVSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ T+SAH L+DI RKL +G+Q+S ++ I G + F L + P +FP Sbjct: 61 QVEQAGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178 E + SFEL + LK ++++T FA++TEE RYYLNGI+FH++++ L A ATDG Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA V MP IIVPRK +GE+ ++L + SV++SLS S+I + S ++ Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDK L+++ + + VDRV+ +++ + +AVK++L DK+ ++ Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + + DI FN +YLL+I+ I SD V L + + Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDSDL-----VELHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +D++ A YVLMPMR+ Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370 >gi|312112797|ref|YP_004010393.1| DNA polymerase III subunit beta [Rhodomicrobium vannielii ATCC 17100] gi|311217926|gb|ADP69294.1| DNA polymerase III, beta subunit [Rhodomicrobium vannielii ATCC 17100] Length = 373 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 158/388 (40%), Positives = 238/388 (61%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M+ V+R+ +L LGH I+ER+NTIP+ ++L+ A+ DG L KA+ ++E A+PA Sbjct: 1 MRFVVDRNAMLRALGHITGIVERRNTIPILSNILIGADRDGGLTFKATDLDMEAVEAVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+V G++TV AH L+DIVRKL DGA+I ++ E G + ++ G ++F L P +FP Sbjct: 61 KVEVTGAVTVPAHTLHDIVRKLPDGAEIRIERKGEEG-RLKVATGRASFELAILPADDFP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATD 177 + E F + S LK L E+ FA++TEE RYYLNGI+ H + E KL AVATD Sbjct: 120 DMGQTELPTRFTVDSGELKRLFEKARFAISTEETRYYLNGIYLHAVDGPEGGKLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA E A MP +IVPRKAVGE++++L S + V+V+LS ++I + + + Sbjct: 180 GHRLAQVETACPAGAGGMPGVIVPRKAVGEVIKLLESGAAPVEVTLSPAKIRFAVGDVVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP +N K L + +L +AVDRVS +SS + +AVKL+ + +L + Sbjct: 240 TSKLIDGSFPDYARVIPTTNKKLLLLENADLVKAVDRVSTLSSEKGRAVKLNAAEGRLVV 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +NP+ G A E ++ Y + P++I FN +YLL+I I + +F+L +S Sbjct: 300 SANNPESGSATEEISAEYQDEPLEIGFNARYLLDITGQIDGTK-----ALFKLADGSSPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + +A YVLMPMR+ Sbjct: 355 LI---------SDETDASALYVLMPMRV 373 >gi|258622959|ref|ZP_05717974.1| DNA polymerase III, beta chain [Vibrio mimicus VM573] gi|258626083|ref|ZP_05720934.1| DNA polymerase III, beta chain [Vibrio mimicus VM603] gi|262172779|ref|ZP_06040457.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451] gi|258581609|gb|EEW06507.1| DNA polymerase III, beta chain [Vibrio mimicus VM603] gi|258584742|gb|EEW09476.1| DNA polymerase III, beta chain [Vibrio mimicus VM573] gi|261893855|gb|EEY39841.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451] Length = 366 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + + V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|332304388|ref|YP_004432239.1| DNA polymerase III, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] gi|332171717|gb|AEE20971.1| DNA polymerase III, beta subunit [Glaciecola agarilytica 4H-3-7+YE-5] Length = 367 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 220/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R + L+ L +ER++T+P+ +VL++ +D L + + E+E+ + + Sbjct: 1 MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDNALWLTGTDLEVELISNVTLT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L DI+R L +G++ISF + G++ I G S + L + +++P Sbjct: 61 GELEEGEITVPAKKLLDIIRGLAEGSEISFHID---GSKAIIRCGRSKYSLSTLSATDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + FE++ S LK L++ HF+MA +++RYYLNG+ ED + VATDGH Sbjct: 118 NLEDWQGELEFEISQSNLKRLIDSVHFSMAQQDVRYYLNGMSLET--EDNVIRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ +I+PRK V EI R++ D S+KV + + I + + Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+ A R SI+S+ + + V+L+LSS ++ +T Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A+E ++V Y ++I FN YL+++++ +++ +EV F L SNSS I Sbjct: 296 NNPEQEEAVEIVDVDYQGDDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MPMR+ Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367 >gi|91228347|ref|ZP_01262275.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01] gi|91188107|gb|EAS74411.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01] Length = 366 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVMLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + + V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|104779318|ref|YP_605816.1| DNA polymerase III subunit beta [Pseudomonas entomophila L48] gi|95108305|emb|CAK12999.1| DNA polymerase III, beta chain [Pseudomonas entomophila L48] Length = 367 Score = 374 bits (962), Expect = e-102, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPSDALIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + +L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSPGTLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + A +IVPRK + E+ R+L+ + +V + L + I + + Sbjct: 176 RLALCAMQAPIDQADRHQVIVPRKGILELARLLTDPEGTVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVDYNGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMR+ Sbjct: 351 QEAGND---------DSSYVVMPMRL 367 >gi|269962692|ref|ZP_06177037.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3] gi|269832615|gb|EEZ86729.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3] Length = 366 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVALE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L S L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + D V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|15640045|ref|NP_062597.1| DNA polymerase III subunit beta [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121727891|ref|ZP_01680950.1| DNA polymerase III, beta chain [Vibrio cholerae V52] gi|147674757|ref|YP_001218399.1| DNA polymerase III subunit beta [Vibrio cholerae O395] gi|153819849|ref|ZP_01972516.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457] gi|153821934|ref|ZP_01974601.1| DNA polymerase III, beta chain [Vibrio cholerae B33] gi|227080250|ref|YP_002808801.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2] gi|229508298|ref|ZP_04397802.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286] gi|229508863|ref|ZP_04398354.1| DNA polymerase III beta subunit [Vibrio cholerae B33] gi|229517134|ref|ZP_04406580.1| DNA polymerase III beta subunit [Vibrio cholerae RC9] gi|229606572|ref|YP_002877220.1| DNA polymerase III subunit beta [Vibrio cholerae MJ-1236] gi|254851578|ref|ZP_05240928.1| DNA polymerase III subunit beta [Vibrio cholerae MO10] gi|262155884|ref|ZP_06029006.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1] gi|262167101|ref|ZP_06034816.1| DNA polymerase III beta subunit [Vibrio cholerae RC27] gi|298501198|ref|ZP_07010997.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757] gi|14547987|sp|Q9KVX5|DPO3B_VIBCH RecName: Full=DNA polymerase III subunit beta gi|9654404|gb|AAF93191.1| DNA polymerase III, beta chain [Vibrio cholerae O1 biovar El Tor str. N16961] gi|121629835|gb|EAX62250.1| DNA polymerase III, beta chain [Vibrio cholerae V52] gi|126509610|gb|EAZ72204.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457] gi|126520554|gb|EAZ77777.1| DNA polymerase III, beta chain [Vibrio cholerae B33] gi|146316640|gb|ABQ21179.1| DNA polymerase III, beta chain [Vibrio cholerae O395] gi|227008138|gb|ACP04350.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2] gi|227011984|gb|ACP08194.1| DNA polymerase III, beta chain [Vibrio cholerae O395] gi|229346197|gb|EEO11169.1| DNA polymerase III beta subunit [Vibrio cholerae RC9] gi|229354138|gb|EEO19070.1| DNA polymerase III beta subunit [Vibrio cholerae B33] gi|229354571|gb|EEO19493.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286] gi|229369227|gb|ACQ59650.1| DNA polymerase III beta subunit [Vibrio cholerae MJ-1236] gi|254847283|gb|EET25697.1| DNA polymerase III subunit beta [Vibrio cholerae MO10] gi|262024487|gb|EEY43173.1| DNA polymerase III beta subunit [Vibrio cholerae RC27] gi|262030336|gb|EEY48978.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1] gi|297540070|gb|EFH76132.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757] Length = 366 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ + + +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|27364432|ref|NP_759960.1| DNA polymerase III subunit beta [Vibrio vulnificus CMCP6] gi|27360551|gb|AAO09487.1| DNA polymerase III, beta subunit [Vibrio vulnificus CMCP6] Length = 366 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + + T+P+ ++L+ +G L + A+ E+E+ + Sbjct: 1 MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV + DI R L D A I+F E G V + G S F L + P ++FP Sbjct: 61 GEFEAGSITVPSRKFIDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L L+ L+E+T F+MA +++RYYLNG+ F I E L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L +C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + ++V + +N+S + Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|237806778|ref|YP_002891218.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187] gi|237499039|gb|ACQ91632.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187] Length = 367 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R +L L I + T+P+ +VLL + L + + E+E+ G +P + Sbjct: 1 MQFSISRDSLLRPLQLVSGSIGGRPTLPILSNVLLNVTEQRLSLTGTDLEVEMIGLVPLA 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSIT A L DI R L DGAQ+ F E G + + G S + L + P +++P Sbjct: 61 GAVAVGSITTPARKLLDICRGLPDGAQLDFVLE---GERLILRSGRSRYSLSTLPAADYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E V F+++ LK L+E T F+MA++++R+YLNG+ F + + L+ V TDGH Sbjct: 118 NIEEWNSVLEFDISQQELKRLMEATQFSMASQDVRFYLNGMLFETSGQGLR--TVGTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA +++ + +I+PRK V E+ R+L + D ++++ + + + E + Sbjct: 176 RLATCRREVLNEPQSDHQVILPRKGVLELARLLENDDRTIRLQIGLNNLRAEAEGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V P +DK L L+QA R +I+S+ + + V+L L+++ L +T Sbjct: 236 KLVDGRFPDYRRVFPRQSDKILIAERELLKQAFSRAAILSNEKFRGVRLHLTTNLLHITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ +++ FN Y+L++++ + ++V + L +NSS + Sbjct: 296 NNPEQEEAEELIDVQYDGPELEVGFNVSYVLDVLNALKC-----EQVKWYLTDANSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +A YV+MPMR+ Sbjct: 351 EDASND---------DAQYVVMPMRL 367 >gi|153827733|ref|ZP_01980400.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2] gi|229515948|ref|ZP_04405405.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21] gi|149737791|gb|EDM52696.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2] gi|229347048|gb|EEO12010.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21] Length = 366 Score = 374 bits (962), Expect = e-101, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D S A YV+MP+R+ Sbjct: 350 ENVDDGS---------AMYVVMPIRL 366 >gi|156972778|ref|YP_001443685.1| DNA polymerase III subunit beta [Vibrio harveyi ATCC BAA-1116] gi|156524372|gb|ABU69458.1| hypothetical protein VIBHAR_00443 [Vibrio harveyi ATCC BAA-1116] Length = 366 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ + +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L S L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + D V + +N+S I Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|304319870|ref|YP_003853513.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503] gi|303298773|gb|ADM08372.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503] Length = 373 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 143/388 (36%), Positives = 232/388 (59%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ER+ +L+ L H ++ER+NTIP+ +VL++A G L + A+ +IEI +PA Sbjct: 1 MQVTIERATLLKALHHTQSVVERRNTIPILSNVLMRAQGGSLALTATDLDIEIAETVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G +T SA LYDIV++L DG QIS K + + + + G S F L P+ +FP+ Sbjct: 61 IAEEGGVTASAVTLYDIVKRLPDGGQISLNK-SSGSSRLMLKSGRSEFQLSILPDDDFPT 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 +E +F +++ L L++RT FAM+ EE RYYLNG++ H E L AVATD Sbjct: 120 LSDEAAGATFTISADALGRLLDRTRFAMSQEETRYYLNGVYLHALTEGEGAPSLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + +P +I+PRKAV E+ R+L D V V+++ ++I + + Sbjct: 180 GHRLARLDSPLPPGAEAIPGVIIPRKAVLELRRLLDDADGDVAVTVTPAKIRFAFGDIVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP ND+ ++V+ R+AVDRVS +S+ + ++VKLSL+ D+L + Sbjct: 240 VSKLIDGTFPDYQRVIPSGNDRVMKVDNDAFRRAVDRVSTVSADKTRSVKLSLTEDQLTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V+NP+ G A + ++V + +++ FN +YLL+I +D++ + VF + S Sbjct: 300 LVNNPETGSATDELSVDFKSTDLEVGFNARYLLDI-----ADQISGETAVFHFADAASPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + A YVLMP+R+ Sbjct: 355 LVTDEEDE---------GALYVLMPLRV 373 >gi|209693644|ref|YP_002261572.1| DNA polymerase III subunit beta [Aliivibrio salmonicida LFI1238] gi|208007595|emb|CAQ77695.1| DNA polymerase III subunit beta-subunit [Aliivibrio salmonicida LFI1238] Length = 369 Score = 374 bits (961), Expect = e-101, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 219/386 (56%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ L + + ++P+ ++LLQ +G L + A+ E+E+ I Sbjct: 1 MKFSIERSHLLKPLQQVSGALGGRPSLPIFGNILLQVENGQLSMTATDLEVELISNILLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G+ITV + DI R L DGA I+ E G V + G S F L + P +FP Sbjct: 61 GDFEAGAITVPSRKFLDICRGLPDGANITIVLE---GDRVLVRSGRSRFTLATLPAQDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L+ + L+ L+E T F+MA +++RYYLNG+ F +VATDGH Sbjct: 118 NIEGWQSEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGT--IFRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV + + +++ + +I+PRK + E++R+L S + SV + S + + + + Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S++K L +C LRQA R +I+S+ + + V+++L+++++ +T Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L+++D +++ + + V + ++N+S + Sbjct: 295 NNPEQEEAEEILDVDFQGEDIEIGFNVSYVLDVLDVLNTLKC--ERVRISMTTANASALV 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 353 EDCANDE---------AQYVVMPIRL 369 >gi|149912067|ref|ZP_01900658.1| DNA polymerase III subunit beta [Moritella sp. PE36] gi|149804863|gb|EDM64900.1| DNA polymerase III subunit beta [Moritella sp. PE36] Length = 366 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R +L L + + T+P+ +VLL A +G L + + E+E+ G + Sbjct: 1 MQFTINREALLRPLQLVSGALGNRPTLPILGNVLLDAKEGKLTLTGTDLEVELIGQVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI R L D AQI N+ + + G S F L + P +EFP Sbjct: 61 GEFTEGRTTVPAKKLLDICRGLPDSAQIQVSYAND---RIVVKSGRSRFSLSTLPATEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + FEL L+ L++ T F+MA++++RYYLNG+ F L+ VATDGH Sbjct: 118 NIEDWDNDIEFELLQGSLRRLIDNTQFSMASQDVRYYLNGMLFETEGNILR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAVA + A + K +IVPRK V E++R+L S++ VK+ L + I + Sbjct: 176 RLAVASCEHDANL-KQQQVIVPRKGVLELVRLLDSEEDMVKIQLGSNNIRAITSGFVFTC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L + L+QA R +I+S+ + + V+L+++ L +T Sbjct: 235 KLVDGRFPDYRRVLPKNADKMLISSREELKQAFSRAAILSNEKFRGVRLNMNQGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + ++ + L +NSS I Sbjct: 295 NNPEQEEAEELLDVAFAHDELEISFNVSYVLDVLNTLKCEK-----IKISLSDANSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D A YV+MPMR+ Sbjct: 350 EDEQSDQ---------ALYVVMPMRL 366 >gi|146305044|ref|YP_001185509.1| DNA polymerase III subunit beta [Pseudomonas mendocina ymp] gi|145573245|gb|ABP82777.1| DNA polymerase III, beta subunit [Pseudomonas mendocina ymp] Length = 367 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L A I +++ ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L + L+ L+ERT FAMA +++RYYLNG+ + L AVATDGH Sbjct: 118 TVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQ--SGMLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ Q +IVPRK + E+ R+L+ +D+ V + L + I N + + Sbjct: 176 RLAMCSMEAAIQQDGKHQVIVPRKGILELARLLTEQDAEVAIVLGQHHIRANTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L+L++ L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLAAGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN YLL+++ + + ++V L SNSS + Sbjct: 296 NNPEQEEAEEEIVVDYAGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QEADND---------DSAYVVMPMRL 367 >gi|312958104|ref|ZP_07772627.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6] gi|311287535|gb|EFQ66093.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6] Length = 367 Score = 374 bits (960), Expect = e-101, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 212/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++E ++ AVATDGH Sbjct: 118 TVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + +IVPRK + E+ R+L+ D +V + L + I + + Sbjct: 176 RLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|15595200|ref|NP_064722.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO1] gi|107098996|ref|ZP_01362914.1| hypothetical protein PaerPA_01000002 [Pseudomonas aeruginosa PACS2] gi|116053722|ref|YP_788157.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa UCBPP-PA14] gi|218888748|ref|YP_002437612.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa LESB58] gi|254237755|ref|ZP_04931078.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719] gi|254243116|ref|ZP_04936438.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192] gi|296386474|ref|ZP_06875973.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAb1] gi|313111476|ref|ZP_07797277.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016] gi|13959347|sp|Q9I7C4|DPO3B_PSEAE RecName: Full=DNA polymerase III subunit beta gi|9945820|gb|AAG03392.1|AE004440_2 DNA polymerase III, beta chain [Pseudomonas aeruginosa PAO1] gi|115588943|gb|ABJ14958.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa UCBPP-PA14] gi|126169686|gb|EAZ55197.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719] gi|126196494|gb|EAZ60557.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192] gi|218768971|emb|CAW24729.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa LESB58] gi|310883779|gb|EFQ42373.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016] Length = 367 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 208/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + I E + ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F +A S L+ L++RT FAMA +++RYYLNG+ + L +VATDGH Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEV--NGGTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ +D +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L LS+ L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ I + ++V F L SNSS + Sbjct: 296 NNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++ YV+MPMR+ Sbjct: 351 HEADND---------DSAYVVMPMRL 367 >gi|148555705|ref|YP_001263287.1| DNA polymerase III subunit beta [Sphingomonas wittichii RW1] gi|148500895|gb|ABQ69149.1| DNA polymerase III, beta subunit [Sphingomonas wittichii RW1] Length = 370 Score = 373 bits (959), Expect = e-101, Method: Composition-based stats. Identities = 154/387 (39%), Positives = 234/387 (60%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ LGH ++ER+NTIP+ +VL++A +G L + A+ +++I A+PA Sbjct: 1 MKATIERATLLKSLGHVQSVVERRNTIPILSNVLIEATAEGTLRLMATDLDLQIVEAVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +VD G+ TVSAH L+DI RKL +G+Q+ ++ + G + F LQ+ P+ +FP Sbjct: 61 AVDQPGATTVSAHTLFDIARKLPEGSQVQLSAAE---GKMQVVAGRARFNLQTLPKDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178 E E FEL + LK L+++T FA++TEE RYYLNGIFFH+ +E L A ATDG Sbjct: 118 MIAEGELPTRFELPAETLKQLIDKTRFAISTEETRYYLNGIFFHVQDEGSPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + MP II+PRK VGE+ ++L D SV ++LS ++I + + ++ Sbjct: 178 HRLARVTIARPDGAEGMPDIIIPRKCVGELRKLLDEVDGSVDITLSSTKIRFGLGTAILT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDK L+++ + + VDRV+ ++S + +AVK++L DK+ ++ Sbjct: 238 SKLIDGTFPDYNRVIPTANDKLLKIDPKSFMEGVDRVATIASEKTRAVKMALDRDKITLS 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +P+ G A E + Y +I FN +YLL+I+ I D V L + + Sbjct: 298 VTSPENGTAAEEVPGDYAATGFEIGFNARYLLDILGQIDG-----DTVEVHLADAAAPTL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR DK A YVLMPMR+ Sbjct: 353 IRENDKAP---------ALYVLMPMRV 370 >gi|109896334|ref|YP_659589.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c] gi|109698615|gb|ABG38535.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c] Length = 367 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 219/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R + L+ L +ER++T+P+ +VL++ +D L + + E+E+ + + Sbjct: 1 MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDSALWLTGTDLEVELISNVTLT 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G ITV A L DI+R L +G++ISF + G + + G S + L + +++P Sbjct: 61 GDFEEGEITVPAKKLLDIIRGLTEGSEISFHVD---GNKAILRCGRSKYSLSTLSANDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + FE++ + LK L++ HF+MA +++RYYLNG+ ED + VATDGH Sbjct: 118 NLEDWQGELEFEISQANLKRLIDSVHFSMAQQDVRYYLNGMSLET--EDNVIRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ +I+PRK V EI R++ D S+KV + + I + + Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+ A R SI+S+ + + V+L+LSS ++ +T Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A+E ++V Y ++I FN YL+++++ +++ +EV F L SNSS I Sbjct: 296 NNPEQEEAVEIVDVDYQGGDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MPMR+ Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367 >gi|297581953|ref|ZP_06943873.1| DNA polymerase subunit III [Vibrio cholerae RC385] gi|297533820|gb|EFH72661.1| DNA polymerase subunit III [Vibrio cholerae RC385] Length = 366 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGGLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + P++I FN Y+L++++ + D V + +N+S + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366 >gi|325275333|ref|ZP_08141284.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51] gi|324099524|gb|EGB97419.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51] Length = 367 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLLKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+TDGH Sbjct: 118 TVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +IVPRK + E+ R+L+ + V + L + I + + Sbjct: 176 RLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R SI+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKVVVGDRQALREAFSRTSILSNEKYRGIRLQLAAGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVDYDGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMR+ Sbjct: 351 QEAGND---------DSSYVVMPMRL 367 >gi|319898310|ref|YP_004158403.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73] gi|319402274|emb|CBI75813.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73] Length = 373 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 153/387 (39%), Positives = 239/387 (61%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I + RS +L+ L R++ER+N IP+ +VL+ A+ G +++KA+ ++E+ + + Sbjct: 1 MRIIIGRSQLLKSLSRVHRVVERRNAIPILSNVLIDASSGGMQLKATDLDLEVIESSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D +++ + + ++++ G +NF LQ P+ +FP Sbjct: 61 IEKAGAITVPAHLLYDIVRKLPDDSEVILEVDENQPSTMSVTSGCANFRLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FHI ++ KL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHIIDDGTSKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ ++ Sbjct: 181 RLAQVDIEAPSGAGGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L +N + AVDRVS +SS R AVKL++ L Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLVINRQDFSSAVDRVSTISSDRGCAVKLTIEKGLLRFV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y ++I FN +YLL+I ISS E++F L + Sbjct: 301 VNNPDSGSAEDQLVADYASDLLEIGFNSRYLLDIAAQISSH-----EMIFMLADPGAPAL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG + NA YVLMP+R+ Sbjct: 356 IRG---------NGDTNALYVLMPIRV 373 >gi|310816810|ref|YP_003964774.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25] gi|308755545|gb|ADO43474.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25] Length = 372 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 144/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ERS +L+ + A ++ER+N IP+ +VL+ A ++ +A+ +IE+ + A Sbjct: 1 MKFSIERSALLKAVAQAQSVVERRNAIPILSNVLIAAEGAAVQFRATDLDIEVQDSAVAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A +L +IVRKL DGA ++ + + I+ G S F L + P+ +FP+ Sbjct: 61 VEQAGAATVNAAMLNEIVRKLPDGALVAITYD-PSAERLTIAAGRSTFTLATLPQQDFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 ++ SF + +L+ L +++ FA++TEE RYYLNG++FHI EE L AVATDG Sbjct: 120 MASADFEASFTAPAPLLRRLFDKSKFAISTEETRYYLNGVYFHIATGEEGPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + A MP +IVPRK VGE+ ++L ++ + VS+SE++I +++++ Sbjct: 180 HRLARIDAPLPDGAAGMPGVIVPRKTVGELRKLLDDDNALIAVSVSETKIRFATPNITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALEDDRLLLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +PD G A E + V Y + ++I FN KYL EI + +V + VF L+ Sbjct: 300 VQSPDTGAAEEELVVAYADERLEIGFNAKYLQEI-----AAQVDRENAVFMLNGPGDPAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +A YV+MPMR+ Sbjct: 355 MR---------EGGDTSAVYVVMPMRV 372 >gi|218708099|ref|YP_002415720.1| DNA polymerase III subunit beta [Vibrio splendidus LGP32] gi|218321118|emb|CAV17068.1| DNA polymerase III beta subunit [Vibrio splendidus LGP32] Length = 366 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+ + G + + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + + L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGH Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEVLDVNFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366 >gi|90581123|ref|ZP_01236922.1| DNA polymerase III subunit beta [Vibrio angustum S14] gi|90437644|gb|EAS62836.1| DNA polymerase III subunit beta [Vibrio angustum S14] Length = 366 Score = 373 bits (958), Expect = e-101, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ DG L + + E+E+ + Sbjct: 1 MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L A IS E G V I S + L + P ++FP Sbjct: 61 GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F L ++ L++ T F+MA +++RYYLNG+ F + + L+ +VATDGH Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D ++ IIVPRK V E++R+ + +S V + + S I + + + Sbjct: 176 RMAVCAIDTGHELP-TKQIIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P ++ K + C +R A R +I+S+ + + V+++LS+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+ I Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 350 EDATNDE---------AMYVVMPIRL 366 >gi|329894831|ref|ZP_08270631.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088] gi|328922725|gb|EGG30059.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088] Length = 375 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 123/393 (31%), Positives = 212/393 (53%), Gaps = 26/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ER +++ L ++ER+ T+P+ +VL+ L + + E+E+TG + Sbjct: 1 MKFSIEREALVKPLSLVAGVVERRQTLPILANVLVNVEGSQLSLVGTDLEVELTGRVTLE 60 Query: 61 VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 GS+TV L+DI + L DG+ I ++ G ++ + G S F L + P +EF Sbjct: 61 DSDSVSGSVTVPGRKLFDICKSLPDGSVIELAQD---GAKLVVKSGRSRFSLATLPATEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P S + LK L+E+T FAMA +++RYYLNG+ + +N ++ VATDG Sbjct: 118 PLVDSLNVRGSMTVDQQALKALIEQTGFAMAQQDVRYYLNGMLWELNANQFRV--VATDG 175 Query: 179 HRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 HRLA + + + + II+PRK V E+ R+L D+ +V+L ++ + + Sbjct: 176 HRLATSHIVLSEGVVQGLSGPDATQIILPRKGVLELSRLLQPGDAPAEVALGDNHLKVET 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 S + +L+DG+FP+YQ V+P ++ K + L+ A+ R +I+S+ + + ++L LSS Sbjct: 236 ASFTFISKLVDGKFPDYQRVLPKNSTKTVVGERDVLKSALSRAAILSNEKYRGIRLHLSS 295 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D+L + +NP+ +A E ++V Y P++I FN YLL+++ I +D V L Sbjct: 296 DQLQVVANNPEQEEAEEIISVDYQGEPLEIGFNVSYLLDVLGVIH-----EDSVKVSLSD 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S + D+ NA YV+MPMR+ Sbjct: 351 PSGSALLEAADE--------HANAMYVVMPMRL 375 >gi|254784275|ref|YP_003071703.1| DNA polymerase III subunit beta [Teredinibacter turnerae T7901] gi|237687276|gb|ACR14540.1| DNA polymerase III, beta subunit [Teredinibacter turnerae T7901] Length = 367 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R +++ L ++ER+ T+ V +VL++ L + + E+EI G + Sbjct: 1 MKFTVSREALIKPLQLVAGVVERRQTMAVLANVLMEIEGDQLSLTGTDLEVEIIGRVQLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A DI R L D + I F +++ + + G S F L + P +EFP Sbjct: 61 SAPGNGEITVPAKKFLDICRSLPDKSVIEFSLQDQ---KATVKSGKSRFTLSTLPANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + +K L++RT FAMA +++RYYLNG+ + + ++++ VATDGH Sbjct: 118 AVEQGSNDINISCEQKEIKRLIDRTAFAMAQQDVRYYLNGMLWELRPGEIRV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + ++++ I+PRK V E+ R+L+ + V+VSL S + + + + Sbjct: 176 RLAVCSRPVDVDVSEIKQAILPRKGVIELARLLNDSEDGVEVSLGSSHMRASTAEYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + N ++L+QA R SI+S+ + + V+L L + L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKVVLGNRSDLKQAFARTSILSNEKYRGVRLELVAGSLTIIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A + + V YN +++ FN YL ++ + + S + + L SNSS + Sbjct: 296 NNPEQEEAQDQVEVDYNGDALEVGFNVSYLQDVANVLDS-----ENIKITLSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ YV+MPMR+ Sbjct: 351 EEPEN---------SDSSYVVMPMRL 367 >gi|28867245|ref|NP_789864.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato str. DC3000] gi|213968440|ref|ZP_03396583.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato T1] gi|301384272|ref|ZP_07232690.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato Max13] gi|302063878|ref|ZP_07255419.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato K40] gi|302131961|ref|ZP_07257951.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato NCPPB 1108] gi|28850479|gb|AAO53559.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato str. DC3000] gi|213926728|gb|EEB60280.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato T1] gi|331017724|gb|EGH97780.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. lachrymans str. M302278PT] Length = 367 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + +LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEIGVEYNGEALEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|86147176|ref|ZP_01065492.1| DNA polymerase III subunit beta [Vibrio sp. MED222] gi|85835060|gb|EAQ53202.1| DNA polymerase III subunit beta [Vibrio sp. MED222] Length = 366 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++L++ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+ + G + + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + + L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGH Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S I Sbjct: 295 NNPEQEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366 >gi|90019651|ref|YP_525478.1| DNA polymerase III subunit beta [Saccharophagus degradans 2-40] gi|89949251|gb|ABD79266.1| DNA polymerase III, beta subunit [Saccharophagus degradans 2-40] Length = 367 Score = 373 bits (957), Expect = e-101, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 206/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R IL+ L ++ER+ T+PV +VL+ L + + E+EI G + Sbjct: 1 MKFIVSRETILKPLQLVAGVVERRQTLPVLANVLIVLEGEQLSLTGTDLEVEIVGRVTVD 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A DI R L DG+ I F +++ +V + G S F L S +EFP Sbjct: 61 QAISEGEITVPAKKFLDICRALPDGSVIEFTLDDQ---KVTVKSGRSRFTLSSLSANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ +F +K L++RT FAMA +++RYYLNG+ + + L++ V+TDGH Sbjct: 118 AVEQGSNDINFSCEQKEVKRLIDRTAFAMAQQDVRYYLNGMLWEVRAGALRV--VSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ I +A+ I+PRK V E+ R+L+ + +V++++ + I + + Sbjct: 176 RLAMCTRPINIDVAEPVQAILPRKGVIELSRLLNDSEENVELTMGPNHIRATTTEYTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + L+QA R +I+S+ + + V+L L + +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKIVLGERAVLKQAFARTAILSNEKYRGVRLLLETGQLTIIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A + + V Y +++ FN YL ++ + + +D+ + L SNSS + Sbjct: 296 NNPEQEEAEDQVAVEYEGDSIEVGFNVSYLQDVTNVLDTDK-----IKMTLSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ YV+MPMR+ Sbjct: 351 EEPEN---------ADSVYVVMPMRL 367 >gi|26986756|ref|NP_742181.1| DNA polymerase III subunit beta [Pseudomonas putida KT2440] gi|148545261|ref|YP_001265363.1| DNA polymerase III subunit beta [Pseudomonas putida F1] gi|60392201|sp|P0A120|DPO3B_PSEPK RecName: Full=DNA polymerase III subunit beta gi|60392202|sp|P0A121|DPO3B_PSEPU RecName: Full=DNA polymerase III subunit beta gi|24981347|gb|AAN65645.1|AE016191_2 DNA polymerase III, beta subunit [Pseudomonas putida KT2440] gi|45691|emb|CAA32894.1| unnamed protein product [Pseudomonas putida] gi|148509319|gb|ABQ76179.1| DNA polymerase III, beta subunit [Pseudomonas putida F1] gi|313496419|gb|ADR57785.1| DnaN [Pseudomonas putida BIRD-1] Length = 367 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+TDGH Sbjct: 118 TVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +IVPRK + E+ R+L+ + V + L + I + + Sbjct: 176 RLALCSMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMR+ Sbjct: 351 QEAGND---------DSSYVVMPMRL 367 >gi|89074701|ref|ZP_01161159.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34] gi|89049465|gb|EAR55026.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34] Length = 366 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + ++P+ ++LL+ DG L + + E+E+ + Sbjct: 1 MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVVLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G++TV + DI R L A IS E G V I S + L + P ++FP Sbjct: 61 GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + +F L ++ L++ T F+MA +++RYYLNG+ F + + L+ +VATDGH Sbjct: 118 NIEDWQSEVAFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D ++ +IVPRK V E++R+ + +S V + + S I + + + Sbjct: 176 RMAVCAIDTGHELP-TKQVIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P ++ K + C +R A R +I+S+ + + V+++LS+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + D+V L +N+ I Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D A YV+MP+R+ Sbjct: 350 EDATNDE---------AMYVVMPIRL 366 >gi|152987905|ref|YP_001345398.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PA7] gi|150963063|gb|ABR85088.1| DNA polymerase III, beta subunit [Pseudomonas aeruginosa PA7] Length = 367 Score = 372 bits (956), Expect = e-101, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L I E + ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPSDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F +A S L+ L++RT FAMA +++RYYLNG+ +N L+ +VATDGH Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGALR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ +D +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L LS+ L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVIGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ I + ++V F L SNSS + Sbjct: 296 NNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++ YV+MPMR+ Sbjct: 351 HEADND---------DSAYVVMPMRL 367 >gi|332187226|ref|ZP_08388965.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] gi|332012647|gb|EGI54713.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] Length = 380 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 155/388 (39%), Positives = 230/388 (59%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VLL+A +G L + A+ +++I ++ A Sbjct: 10 MKATIERATLLKGLSHVQSVVERRNTIPILSNVLLEATAEGQLRMMATDLDLQINDSVAA 69 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +VD GS TVSAH L+DI RKL +GAQ+ + I G + F L + P +FP Sbjct: 70 AVDQPGSTTVSAHTLFDIARKLPEGAQVQLTAAE---GRMTIVAGRARFSLGTLPRDDFP 126 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 E E FEL +LK ++++T FA++TEE RYYLNGIF H+ E++ L A ATD Sbjct: 127 VIAEGELPTQFELPVELLKQIIDKTRFAISTEETRYYLNGIFLHVAEDNGAPVLKAAATD 186 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA ++ MP +IVPRK V E+ ++L D SV VSLS ++I ++ + Sbjct: 187 GHRLARVTIERPNGAEGMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGTKIRFDLGQAIL 246 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP +NDK L+++ Q VDRVS +++ + +AVK++L D++ + Sbjct: 247 TSKLIDGTFPDYSRVIPTANDKILKLDPKAFMQGVDRVSTIATEKTRAVKMALDRDRITL 306 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V +P+ G A E + Y P +I FN +YLL+I+ I SD V L + + Sbjct: 307 SVTSPENGTASEEVPGEYTSLPFEIGFNSRYLLDILGQIDSDL-----VEVHLADAAAPT 361 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR DK A YVLMPMR+ Sbjct: 362 LIRENDKAP---------ALYVLMPMRV 380 >gi|269103821|ref|ZP_06156518.1| DNA polymerase III beta subunit [Photobacterium damselae subsp. damselae CIP 102761] gi|268163719|gb|EEZ42215.1| DNA polymerase III beta subunit [Photobacterium damselae subsp. damselae CIP 102761] Length = 365 Score = 372 bits (955), Expect = e-101, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 217/386 (56%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R +L+ L + + ++P+ ++LLQ +GLL + + E+E+ I Sbjct: 1 MKFTLAREQLLKPLQQVSGAL-GRPSLPILGNILLQVEEGLLSLTGTDLEVELVAKIVLE 59 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ITV + DI R L D A IS E G I G S + L + P S+FP Sbjct: 60 GEFEAGAITVPSRKFLDICRGLPDSATISVSVE---GDRALIRSGRSRYSLATLPASDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL S L+ L++ T F+MA +++RYYLNG+ F + + L+ VATDGH Sbjct: 117 NIDDWQSEVEFELEQSRLRQLIDSTQFSMAHQDVRYYLNGMLFETDGKLLR--TVATDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV +D + II+PRK V E++R+L + ++ V++ + S + + + + Sbjct: 175 RMAVCAIDTAYDVP-SKQIILPRKGVLELVRLLDNPEAPVQIQIGGSNLRATVNNFVFTS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +++K + +C LR+A R +I+S+ + + V+++L++ ++ +T Sbjct: 234 KLVDGRFPDYRRVLPQNSNKFVTASCDELRKAFSRAAILSNEKFRGVRVNLAAGEMRITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN Y+L++++ + ++V L +N+S + Sbjct: 294 NNPEQEEAEEFLDVDYQGEPIEIGFNVSYVLDVLNTLKC-----EQVKMSLTDANASALL 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +A YV+MP+R+ Sbjct: 349 EDNAVD---------DAMYVVMPIRL 365 >gi|117619320|ref|YP_854529.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] gi|117560727|gb|ABK37675.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp. hydrophila ATCC 7966] Length = 367 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R +L L + + T+P+ +VLL ++GLL + + E+E+ G + + Sbjct: 1 MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DI R L +GA I N G + I G S F L + P +E+P Sbjct: 61 SDSQDGRTTVPARKLLDICRGLPEGADIRL---NTEGERLIIRSGRSRFNLSTLPATEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E V F++ LK L++ T F+MA++++RYYLNG+ F L+ VATDGH Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++V + +I+PRK V E++R+L ++D V++ + S + ++ + Sbjct: 176 RLATCRREVVTESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+++ VIP ++DK L +LRQA R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + D++ L S SS I Sbjct: 296 NNPEQEEAEELLDVQYEAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +A YV+MPMRI Sbjct: 351 EDFD---------SQDAQYVVMPMRI 367 >gi|229587580|ref|YP_002869699.1| DNA polymerase III subunit beta [Pseudomonas fluorescens SBW25] gi|229359446|emb|CAY46287.1| DNA polymerase III, beta chain [Pseudomonas fluorescens SBW25] Length = 367 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 210/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDE---AKLVVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++E ++ AVATDGH Sbjct: 118 TVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + +IVPRK + E+ R+L+ + +V + L + I + + Sbjct: 176 RLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEVGVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|319403602|emb|CBI77187.1| DNA polymerase III, beta chain [Bartonella rochalimae ATCC BAA-1498] Length = 373 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 157/387 (40%), Positives = 241/387 (62%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ RS +L+ L RI+ER+NTIP+ +VL+ +DG +++KA+ ++EI + Sbjct: 1 MRVTIGRSQLLKSLSRVHRIVERRNTIPILSNVLIDTSDGRMQLKATDLDLEIIETSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D + + + ++I+ G +NF LQ P+ +FP Sbjct: 61 LEQAGAITVPAHLLYDIVRKLPDDSDVILDVNENQASTMSITSGCTNFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FH+ +D LKL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIYDDILKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ + MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ ++ Sbjct: 181 RLAQVDIEAPSGADGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L +N + AVDRVS +SS R +AVKL + + + Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLIINRQDFSAAVDRVSTISSDRGRAVKLMIEKGIVKLV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I +SS DE++ S + Sbjct: 301 VNNPDSGSAKDQLVADYVFDPLEIGFNSRYLLDIAAQLSS-----DEMICMFADSAAPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG + NA YVLMP+R+ Sbjct: 356 IRG---------NGDTNALYVLMPVRV 373 >gi|298484610|ref|ZP_07002715.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] gi|298160867|gb|EFI01883.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv. savastanoi NCPPB 3335] Length = 367 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDVKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|167031025|ref|YP_001666256.1| DNA polymerase III subunit beta [Pseudomonas putida GB-1] gi|166857513|gb|ABY95920.1| DNA polymerase III, beta subunit [Pseudomonas putida GB-1] Length = 367 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+TDGH Sbjct: 118 TAEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +IVPRK + E+ R+L+ + V + L + I + + Sbjct: 176 RLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVDYKGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMR+ Sbjct: 351 QEAGND---------DSSYVVMPMRL 367 >gi|308047724|ref|YP_003911290.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799] gi|307629914|gb|ADN74216.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799] Length = 366 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 204/386 (52%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R +L+ L +ER++ +P+ +VLL+ + LL++ + E+E+ G + Sbjct: 1 MQFVINRETLLKPLQLVSGAVERRHNLPILANVLLEVSGNLLKVTGTDLEVELIGQVEVE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A DI + L D A++ +++ + I G S F L + P EFP Sbjct: 61 GDIQPGRTTVPARKFLDICKSLPDQAELRIEQQD---NRLLIKSGRSRFSLSTLPADEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L VLK+L+E T F+MA +++RYYLNG+ F L+ VATDGH Sbjct: 118 EIGDWKGELQFTLPQGVLKSLIEATQFSMAHQDVRYYLNGMLFETEGNVLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV+ I A + + +IVPRK V E+ R+ + + + + + ES I + Sbjct: 176 RLAVSHRVIEASLPE-KQVIVPRKGVIELSRLFEDEQAEITLCIGESSIRAVTRDAIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + LRQA R SI+S+ + + V+L L +D+L +T Sbjct: 235 KLVDGRFPDYRRVLPKDGDKVVVAERDALRQAFARASILSNEKFRGVRLLLENDRLTITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E +++ Y ++I FN Y+L++++ + + V L +NSS Sbjct: 295 NNPEQEEAEEVLDLAYPYTSLEIGFNVSYVLDVLNALK-----QENVKMVLGEANSSALF 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + YV+MPMR+ Sbjct: 350 ENADNDE---------SLYVVMPMRL 366 >gi|254295379|ref|YP_003061402.1| DNA polymerase III subunit beta [Hirschia baltica ATCC 49814] gi|254043910|gb|ACT60705.1| DNA polymerase III, beta subunit [Hirschia baltica ATCC 49814] Length = 374 Score = 371 bits (954), Expect = e-101, Method: Composition-based stats. Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++R +++ L H ++ER+NTIP+ +VL+ A L + A+ ++E + A Sbjct: 1 MKLTIDRGALMKALSHVQNVVERRNTIPILSNVLIDAEGTSLRLTATDLDMEASDTTIAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS+T A L+D+VRKL DG+ I + E + I+ G S F L + P +F + Sbjct: 61 IEKPGSVTAPAQTLFDVVRKLPDGSDIGLLLDTE-TRRLTITSGRSRFALPTLPADDFQT 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 +EE SFE+ ++ + L+++T FA++TEE RYYLNG++ H E +KL VATDG Sbjct: 120 MSKEEAPNSFEIPAADFRRLIDKTKFAISTEETRYYLNGVYMHGTEVGGAVKLRTVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236 HRLA+AE D +P II+PRKA+ EI R+L +DS V VS SES+I + + Sbjct: 180 HRLALAEADAPKGAETLPGIIIPRKAIAEIRRLLDDAAQDSDVSVSTSESKIVVKVGDAV 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ +LIDG FP+Y VIP SN K L + + + AVDRV+ +S+ R ++VKL+L +DKL Sbjct: 240 ITSKLIDGSFPDYSRVIPQSNSKILVLKNSEFKSAVDRVATVSAERSRSVKLTLENDKLV 299 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + V N + G+ +E + Y++ PM+I FN +YLL++ I DE+ F L+ S SS Sbjct: 300 LQVSNAETGQGVEELEAQYSDEPMEIGFNARYLLDVTQQIEG-----DEIRFELNDSASS 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + A YVLMP+R+ Sbjct: 355 ARVTD---------LADQGAQYVLMPLRV 374 >gi|330827702|ref|YP_004390654.1| DNA polymerase III subunit beta [Aeromonas veronii B565] gi|328802838|gb|AEB48037.1| DNA polymerase III, beta subunit [Aeromonas veronii B565] Length = 367 Score = 371 bits (953), Expect = e-101, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R +L L + + T+P+ +VLL ++GLL + + E+E+ G + + Sbjct: 1 MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G TV A L DI R L +GA+I N G + I G S F L + P +E+P Sbjct: 61 GASEDGRTTVPARKLLDICRGLPEGAEIRL---NTEGERLIIRSGRSRFNLSTLPATEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E V F+++ LK L++ T F+MA++++RYYLNG+ F L+ VATDGH Sbjct: 118 NIEDWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++V + +I+PRK V E++R+L ++D V++ + S + ++ + Sbjct: 176 RLATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+++ VIP ++DK L +LRQA R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + D++ L S SS I Sbjct: 296 NNPEQEEAEELLDVQYAAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMRI Sbjct: 351 EDFEH---------QDAQYVVMPMRI 367 >gi|319405029|emb|CBI78639.1| DNA polymerase III, beta chain [Bartonella sp. AR 15-3] Length = 373 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 159/387 (41%), Positives = 247/387 (63%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ RS +L+ LG RI+ER+NTIP+ +VL+ A+DG +++KA+ ++EIT + + Sbjct: 1 MRVTISRSQLLKSLGRVHRIVERRNTIPILSNVLIDASDGRMQLKATDLDLEITESSSVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ITV AHLLYDIVRKL D +++ + + ++I+ G +NF LQ P+ +FP Sbjct: 61 IEQSGAITVPAHLLYDIVRKLLDDSEVILDVDESQASTMSITSGCTNFQLQCLPKVDFPE 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179 + ++ F L +S LK L++ T FAM+TEE RYYLNGI+FHI +D+ KL V+TDGH Sbjct: 121 SLPGQFSCRFSLLASKLKYLIDCTQFAMSTEETRYYLNGIYFHIISDDISKLRLVSTDGH 180 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA +++ MP +I+PRK VGE+ ++L + D+ V + LS+++I ++ S+ ++ Sbjct: 181 RLAQVDIEAPLGSDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP YQ VIP NDK+L +N + AVDRVS +SS R +AVKL + + Sbjct: 241 SKLIDGVFPEYQRVIPLKNDKKLIINRRDFSSAVDRVSTISSDRGRAVKLMIEKGLVRFV 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+NPD G A + + Y P++I FN +YLL+I +SS DE++F S + Sbjct: 301 VNNPDSGSAKDQLVADYAFDPLEIGFNSRYLLDIAAQLSS-----DEMIFTFADSGAPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG ++ ++ YVLMP+R+ Sbjct: 356 IRG---------NSDTDSLYVLMPIRV 373 >gi|294085124|ref|YP_003551884.1| DNA polymerase III subunit beta [Candidatus Puniceispirillum marinum IMCC1322] gi|292664699|gb|ADE39800.1| DNA polymerase III, beta subunit [Candidatus Puniceispirillum marinum IMCC1322] Length = 367 Score = 371 bits (953), Expect = e-100, Method: Composition-based stats. Identities = 149/385 (38%), Positives = 232/385 (60%), Gaps = 18/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R +L LGH ++ER+NTIP+ +V+L+A DG L + A+ +++IT + + Sbjct: 1 MKLAIDRMSLLRPLGHVQSVVERRNTIPILANVVLRAEDGQLSLTATDMDMDITTEVGCA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ T+SAH+LYDIVRKL DG+++ + IS G S+F L + P +FP+ Sbjct: 61 VATAGTTTMSAHMLYDIVRKLPDGSEVELSVGD---GHAMISAGRSSFRLPTLPVEDFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +F L ++ ++L++ T FA++TEE RYYLNGI+ H + LCAVATDGHR Sbjct: 118 ISSNELPTNFVLTAADFRDLIDATKFAISTEETRYYLNGIYLH-KSDAGDLCAVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + A+MPSII+PRKAVGE+ ++L D V +S+SE+R ++ ++ + Sbjct: 177 LAMTKQTLPGGAAQMPSIILPRKAVGELRKLLDDYDGDVTISMSETRAEFAFGAVRLTTK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y VIP +NDK ++V+ AVDRVS +SS + ++VK+ L + + ++ Sbjct: 237 LIDGTFPDYTRVIPTNNDKIMQVDVGAFSAAVDRVSTISSEKSKSVKIGLRAGVMTLSAS 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N D A E + V Y+ M+I FN +YLL+I + +V + V F L S +R Sbjct: 297 NTDASSATEELEVSYSGNEMEIGFNARYLLDI-----ASQVNSEMVEFALADQGSPTLVR 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ + +VLMPMR+ Sbjct: 352 TPGDDA---------SLFVLMPMRV 367 >gi|257485598|ref|ZP_05639639.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] gi|289628213|ref|ZP_06461167.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi str. NCPPB3681] gi|289649103|ref|ZP_06480446.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi str. 2250] gi|330870076|gb|EGH04785.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi str. 0893_23] gi|331011886|gb|EGH91942.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci ATCC 11528] Length = 367 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|226942172|ref|YP_002797245.1| DNA polymerase III subunit beta [Azotobacter vinelandii DJ] gi|226717099|gb|ACO76270.1| DNA polymerase III, beta chain 1, 2, and 3 protein [Azotobacter vinelandii DJ] Length = 367 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G +P Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEKQQLSLTGTDLEVELVGRVPLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L DI + L + I + + ++ I G S F L + P S+FP Sbjct: 61 ENAEPGEITVPARKLMDICKSLPNDTLIDIRLDEQ---KLLIKAGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ +N L+ AVATDGH Sbjct: 118 TAEEGLGSLTFSLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEMNGGVLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLALCSMQSGIEHADRHQVIVPRKGILELARLLTDQDGEVSIVLGQYHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK++ + LR+A R +I+S+ + + ++L L+S L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKKVLGDRQLLREAFSRTAILSNEKYRGIRLQLASGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y+ ++I FN YLL+++ +S+ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEVAVDYSGDALEIGFNVSYLLDVLGVMSA-----EQVCLTLSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QEADND---------DSAYVVMPMRL 367 >gi|103486201|ref|YP_615762.1| DNA polymerase III subunit beta [Sphingopyxis alaskensis RB2256] gi|98976278|gb|ABF52429.1| DNA polymerase III, beta subunit [Sphingopyxis alaskensis RB2256] Length = 371 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 153/388 (39%), Positives = 234/388 (60%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ LGH ++ER+NTIP+ +VL++A+ G L + A+ ++++ I A Sbjct: 1 MKATIERAVLLKSLGHVQSVVERRNTIPILSNVLIEADGTGQLRLMATDLDLQVVETIAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ TVSAH L++I RKL +G+++S +V + G SNF L + P +FP Sbjct: 61 KVETPGTTTVSAHTLFEIARKLPEGSEVSLAAAE---GKVQVKAGRSNFNLPTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATD 177 E + +FEL + L ++++T FA++TEE RYYLNGIF H+ E+ L A ATD Sbjct: 118 VIAEGDLPTNFELPVAELIQIIDKTRFAISTEETRYYLNGIFLHVAEDATGPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA V A MP +IVPRK VGEI ++L + +V++SLS S+I + + + Sbjct: 178 GHRLARYTVTRPDGAAGMPDVIVPRKCVGEIRKLLDEAEGNVEISLSASKIRFQLGNAVL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP +NDK L+V+ +L Q VDRVS ++S + +AVK+ L D++ + Sbjct: 238 TSKLIDGTFPDYSRVIPTANDKLLKVDPKSLFQGVDRVSTIASEKTRAVKVGLDKDRITL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V +P+ G A E + Y+ M+I FN +YL +I+ + D V L +N+ Sbjct: 298 SVTSPENGTAAEELAAAYDSDAMEIGFNARYLSDILGQVDG-----DSVELHLADANAPT 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR +K A YVLMPMR+ Sbjct: 353 LIRESEKSP---------ALYVLMPMRV 371 >gi|330806659|ref|YP_004351121.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp. brassicacearum NFM421] gi|327374767|gb|AEA66117.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp. brassicacearum NFM421] Length = 367 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPADPGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ ++ AVATDGH Sbjct: 118 TVEEGPGSLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + +IVPRK + E+ R+L+ D +V + L + I + + Sbjct: 176 RLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|66043273|ref|YP_233114.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae B728a] gi|302185841|ref|ZP_07262514.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae 642] gi|63253980|gb|AAY35076.1| DNA polymerase III, beta chain [Pseudomonas syringae pv. syringae B728a] gi|330976403|gb|EGH76460.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aptata str. DSM 50252] Length = 367 Score = 371 bits (952), Expect = e-100, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|56551876|ref|YP_162715.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis ZM4] gi|241761806|ref|ZP_04759892.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] gi|56543450|gb|AAV89604.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis ZM4] gi|241373720|gb|EER63280.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis ATCC 10988] Length = 369 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 147/386 (38%), Positives = 235/386 (60%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A ++G +++ A+ ++++ + A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G TVSAH+L++IVRKL DG+QI + ++ I G S F L + P +FP Sbjct: 61 EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E F L + LK ++++T FA++ +E RYYLNGIF H+ +++ + A ATDGH Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + A MP +I+PRK V E+ ++L + +K+SLS S+I ++ ++ Sbjct: 178 RLACVTIPAPAGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP +NDK L+V +L Q VDRV+ ++S + +AVK+S+ + K+ ++V Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G A E + Y+ P+DI FN +YLL+I+ I S D+ L + + I Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D+ + A YVLMPMR+ Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369 >gi|70733515|ref|YP_257154.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf-5] gi|68347814|gb|AAY95420.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Pf-5] Length = 367 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + +L S L+ L+ERT FAMA +++RYYLNG+ ++ ++ AVATDGH Sbjct: 118 TVEEGPGSLTCQLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + +IVPRK + E+ R+L+ D +V + L + I + + Sbjct: 176 RLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|145297126|ref|YP_001139967.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp. salmonicida A449] gi|142849898|gb|ABO88219.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp. salmonicida A449] Length = 367 Score = 370 bits (951), Expect = e-100, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + R +L L + + T+P+ +VLL + GLL + + E+E+ G + + Sbjct: 1 MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVYLN 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI R L +GA I N G + I G S F L + P SE+P Sbjct: 61 NESQDGRTTVPARKLLDICRGLPEGADIRL---NTEGERLIIRSGRSRFNLSTLPASEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E V F++ LK L++ T F+MA++++RYYLNG+ F L+ VATDGH Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++V + +I+PRK V E++R+L ++D V++ + S + ++ + Sbjct: 176 RLATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+++ VIP ++DK L +LRQA R +I+S+ + + V+L+L + L +T Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + D++ L S SS I Sbjct: 296 NNPEQEEAEELLDVQYEASEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +A YV+MPMRI Sbjct: 351 EDFDH---------QDAQYVVMPMRI 367 >gi|71736736|ref|YP_272317.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. phaseolicola 1448A] gi|71557289|gb|AAZ36500.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. phaseolicola 1448A] gi|320321689|gb|EFW77788.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. B076] gi|320331109|gb|EFW87080.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330881907|gb|EGH16056.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. race 4] gi|330952331|gb|EGH52591.1| DNA polymerase III subunit beta [Pseudomonas syringae Cit 7] gi|330961506|gb|EGH61766.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. maculicola str. ES4326] gi|330987020|gb|EGH85123.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. lachrymans str. M301315] Length = 367 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|330876356|gb|EGH10505.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. morsprunorum str. M302280PT] gi|330964180|gb|EGH64440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. actinidiae str. M302091] Length = 367 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEIGVEYNGESLEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|148251628|ref|YP_001236213.1| DNA polymerase III subunit beta [Bradyrhizobium sp. BTAi1] gi|146403801|gb|ABQ32307.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. BTAi1] Length = 372 Score = 370 bits (950), Expect = e-100, Method: Composition-based stats. Identities = 165/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TVER+ +L+ LGH R++ER+NTIP+ +VL++A + L ++A+ ++E+T + A Sbjct: 1 MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV AH+ YDIVRKL DG+QI + E + I G S F LQ+ PES+FP Sbjct: 61 TATAGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + ++F + + +K+L++RT FA++TEE RYYLNGI+ H + L AVATDG Sbjct: 120 LAAGDMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPSLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA ++ A A+MP +IVPRK VGE+ R++ DS +++ LS+ +I + + ++ Sbjct: 180 HRLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIRIELSQGKIRFTLGQVVLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP +NDKEL V+ + AVDRVS +SS R +AVKL+LS +L ++ Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKADFAAAVDRVSTISSERGRAVKLALSPGRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPD G A E + V Y +DI FN +YLL+I I + V RL S Sbjct: 300 VTNPDSGSATEELEVEYAADALDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D NA YVLMPMR+ Sbjct: 355 IQDRDN---------RNALYVLMPMRV 372 >gi|126172259|ref|YP_001048408.1| DNA polymerase III subunit beta [Shewanella baltica OS155] gi|152998557|ref|YP_001364238.1| DNA polymerase III subunit beta [Shewanella baltica OS185] gi|160873128|ref|YP_001552444.1| DNA polymerase III subunit beta [Shewanella baltica OS195] gi|217971218|ref|YP_002355969.1| DNA polymerase III subunit beta [Shewanella baltica OS223] gi|304412706|ref|ZP_07394309.1| DNA polymerase III, beta subunit [Shewanella baltica OS183] gi|307305829|ref|ZP_07585575.1| DNA polymerase III, beta subunit [Shewanella baltica BA175] gi|125995464|gb|ABN59539.1| DNA polymerase III, beta subunit [Shewanella baltica OS155] gi|151363175|gb|ABS06175.1| DNA polymerase III, beta subunit [Shewanella baltica OS185] gi|160858650|gb|ABX47184.1| DNA polymerase III, beta subunit [Shewanella baltica OS195] gi|217496353|gb|ACK44546.1| DNA polymerase III, beta subunit [Shewanella baltica OS223] gi|304348916|gb|EFM13331.1| DNA polymerase III, beta subunit [Shewanella baltica OS183] gi|306911322|gb|EFN41748.1| DNA polymerase III, beta subunit [Shewanella baltica BA175] gi|315265353|gb|ADT92206.1| DNA polymerase III, beta subunit [Shewanella baltica OS678] Length = 366 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQVVVH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK++++ T F+MA +++RYYLNG+ F L+ A+ATDGH Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L S D + +++ ++ I + + Sbjct: 176 RLALSHRTIEAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEIIDVEYNNQALEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|330970326|gb|EGH70392.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aceris str. M302273PT] Length = 367 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPSNDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|237801663|ref|ZP_04590124.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] gi|331024522|gb|EGI04578.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae str. 1_6] Length = 367 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVMGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYSGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|330890248|gb|EGH22909.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. mori str. 301020] Length = 367 Score = 369 bits (949), Expect = e-100, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSSDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + A +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|197286951|ref|YP_002152823.1| DNA polymerase III subunit beta [Proteus mirabilis HI4320] gi|227354808|ref|ZP_03839225.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906] gi|118801|sp|P22838|DPO3B_PROMI RecName: Full=DNA polymerase III subunit beta gi|150879|gb|AAA83959.1| DNA polymerase III beta subunit [Proteus mirabilis] gi|194684438|emb|CAR46154.1| DNA polymerase III beta subunit [Proteus mirabilis HI4320] gi|227165126|gb|EEI49957.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906] Length = 367 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LL+ + L + + E+E+ + S Sbjct: 1 MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+IS + G + + G S F L + P S+FP Sbjct: 61 QSHEIGATTVPARKFFDIWRGLPEGAEISVELD---GDRLLVRSGRSRFSLSTLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+ +L VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 RLAV +DI + S+IVPRK V E++R+L S +S +++ + + + ++ + Sbjct: 176 RLAVCAMDIGQSLPG-HSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P + K + C L+QA R +I+S+ + + V+++L++ +L +T Sbjct: 235 SKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN YLL++++ + +EV L + SSV Sbjct: 295 ANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKC-----EEVKLLLTDAVSSVQ 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + MPMR+ Sbjct: 350 VENVASAAAAYVV---------MPMRL 367 >gi|146280399|ref|YP_001170552.1| DNA polymerase III subunit beta [Pseudomonas stutzeri A1501] gi|145568604|gb|ABP77710.1| DNA polymerase III, beta subunit [Pseudomonas stutzeri A1501] gi|327478614|gb|AEA81924.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 4166] Length = 367 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFSIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVALE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L A IS +++ +V I G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPSDALISIRLDDQ---KVVIKSGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E SF +A L+ L+ER+ FAMA +++RYYLNG+ ++ L AVATDGH Sbjct: 118 TVEEGPGSLSFTVAQGKLRKLIERSAFAMAQQDVRYYLNGMLIEVS--SGMLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +IVPRK + E+ R+L+ +D+ V + L + I + + Sbjct: 176 RLAMCSMQAGIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L S L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L +NSS + Sbjct: 296 NNPEQEEAEEEVAVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDANSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QEFDND---------DSAYVVMPMRL 367 >gi|170719189|ref|YP_001746877.1| DNA polymerase III subunit beta [Pseudomonas putida W619] gi|169757192|gb|ACA70508.1| DNA polymerase III, beta subunit [Pseudomonas putida W619] Length = 367 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 211/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + I + + ++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLPNDVLIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AV+TDGH Sbjct: 118 TVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + + +IVPRK + E+ R+L+ + V + L + I N + + Sbjct: 176 RLALCSMSAAIEQDERHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRANTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L++ +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEISVDYDGASLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMR+ Sbjct: 351 QEAGND---------DSSYVVMPMRL 367 >gi|239993751|ref|ZP_04714275.1| DNA polymerase III, beta subunit [Alteromonas macleodii ATCC 27126] gi|332139412|ref|YP_004425150.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep ecotype'] gi|327549434|gb|AEA96152.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep ecotype'] Length = 366 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R L+ L +ER++T+P+ +VL++ ++ L + + E+E+ ++ Sbjct: 1 MKFTISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L+DI+R + +G I F + G++ I G + L + +++P Sbjct: 61 GEFTEGEITVPAKKLFDIIRGISEGTDIHFSLD---GSKALIRAGRGRYTLSTLSANDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E FEL+ S LK L++ T F+MA +++RYYLNG+ E ++ VATDGH Sbjct: 118 NLEDWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ + +I+PRK V EI R++S D S+KV + + + + + Sbjct: 176 RLALCRLNYETALPSR-QVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DKE+ + L++A R +I+S+ + + V+L+LSS +L +T Sbjct: 235 KLVDGRFPDYRRVLPQNGDKEIIASKAVLKEAFSRAAILSNEKFRGVRLNLSSGELKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN YL+++++ + SD V L SN+S I Sbjct: 295 NNPEQEEAEEIVDVQYQGDDLEIGFNVAYLIDVLNALGSDG-----VKVSLSDSNASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ A YV+MPMR+ Sbjct: 350 EDDADDA---------ALYVIMPMRL 366 >gi|260752565|ref|YP_003225458.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis NCIMB 11163] gi|258551928|gb|ACV74874.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis NCIMB 11163] Length = 369 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 146/386 (37%), Positives = 234/386 (60%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L+ L H ++ER+NTIP+ +VL++A ++G +++ A+ ++++ + A Sbjct: 1 MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G TVSAH+L++IVRKL DG+QI + ++ I G S F L + P +FP Sbjct: 61 EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E F L + LK ++++T FA++ +E RYYLNGIF H+ +++ + A ATDGH Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + MP +I+PRK V E+ ++L + +K+SLS S+I ++ ++ Sbjct: 178 RLACVTIPAPVGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y VIP +NDK L+V +L Q VDRV+ ++S + +AVK+S+ + K+ ++V Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G A E + Y+ P+DI FN +YLL+I+ I S D+ L + + I Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D+ + A YVLMPMR+ Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369 >gi|114769643|ref|ZP_01447253.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255] gi|114549348|gb|EAU52230.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255] Length = 372 Score = 369 bits (948), Expect = e-100, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ERS +L+ + A ++ER+NTIP+ +VL++A G + +A+ +IE+ + Sbjct: 1 MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AH L++IVRKL DGA + ++ +++ G S+F L + P +FP Sbjct: 61 VERAGATTVGAHTLHEIVRKLPDGAMVE-LTDDATANRLDVVAGRSSFSLATLPREDFPI 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F S L+ L +++ FA++TEE RYYLNG++ H + E L VATDG Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +P +IVPRK VGE+ ++L + + VS+SE++I + + ++ Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ QAVDRVS +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +S A YV+MPMR+ Sbjct: 355 MREGNDES---------AVYVVMPMRV 372 >gi|77917620|ref|YP_355435.1| DNA polymerase III subunit beta [Pelobacter carbinolicus DSM 2380] gi|77543703|gb|ABA87265.1| DNA polymerase III, beta subunit [Pelobacter carbinolicus DSM 2380] Length = 372 Score = 369 bits (947), Expect = e-100, Method: Composition-based stats. Identities = 119/389 (30%), Positives = 203/389 (52%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++E+ L+ L I+E+KNTIP+ +VL++A D + + A+ E+ + + PAS Sbjct: 1 MNFSIEKEVFLKGLARVQGIVEKKNTIPILANVLIEAEDDHIRLTATDLEVGMKASYPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA L++I+++L + KEN + I G S F + EFP Sbjct: 61 VTSAGRITVSAKKLFEIIKELPEKEISFTAKEN---CWIEIRCGKSLFNVVGLSADEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + F++ +LK L+E+T F+M+T+E +Y LNGI+ E++ + L VATDG Sbjct: 118 FPQIDKEQFFQIPGDILKRLIEKTAFSMSTDESKYNLNGIYLRAMEDEGRQILRFVATDG 177 Query: 179 HRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRLA+ + + + +I PRK V E+ +I + V + ++ + Sbjct: 178 HRLALMQTPLDCSHVEPLAKGVIFPRKGVLELRKIAEEGNGEVLLGFMDNNAVIKKSQTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RL+DG+FP+Y VIP +ND + + A+ R++I+SS + + VK+ ++L Sbjct: 238 IVMRLVDGDFPDYNRVIPLNNDLKANIPREEFLHALRRMAILSSEKSKGVKIDFQENQLT 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP+ G A E + Y E + I FN +YL++I+ N+ S ++V L S Sbjct: 298 LSSSNPEFGDAREDFEIEYAEGDLSIGFNARYLIDILANLDS-----EKVCLSLRDQLSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + + V+MPMR+ Sbjct: 353 GLITPLDDN---------DYLAVIMPMRL 372 >gi|49086146|gb|AAT51331.1| PA0002 [synthetic construct] Length = 368 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 125/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERLQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + I E + ++ + G S F L + P ++FP Sbjct: 61 DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F +A S L+ L++RT FAMA +++RYYLNG+ + L +VATDGH Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEV--NGGTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ +D +IVPRK + E+ R+L+ +D V + L + I + + Sbjct: 176 RLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L LS+ L + Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ I + ++V F L SNSS + Sbjct: 296 NNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++ YV+MPMR+ Sbjct: 351 HEADND---------DSAYVVMPMRL 367 >gi|297184289|gb|ADI20406.1| DNA polymerase sliding clamp subunit (pcna homolog) [uncultured alpha proteobacterium EB080_L43F08] Length = 372 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ERS +L+ + A ++ER+NTIP+ +VL++A G + +A+ +IE+ + Sbjct: 1 MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV AH L++IVRKL DGA + ++ +++ G S+F L + P +FP Sbjct: 61 VERAGATTVGAHTLHEIVRKLPDGAMVE-LTDDATANRLDVVAGRSSFSLATLPREDFPI 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 EY +F S L+ L +++ FA++TEE RYYLNG++ H + E L VATDG Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +P +IVPRK VGE+ ++L + + VS+SE++I + + ++ Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + L V+ QAVDRVS +SS R +AVKL+L D+L ++ Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 VNAPDSGAAEEELVVGYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +S A YV+MPMR+ Sbjct: 355 MREGNDES---------AVYVVMPMRV 372 >gi|254428026|ref|ZP_05041733.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881] gi|196194195|gb|EDX89154.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881] Length = 366 Score = 368 bits (946), Expect = e-100, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +L+ L ++E++ T+PV +VLL+ DG L + + E+E+ +P Sbjct: 1 MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI + L A I F + G + + G S F L + P SEFP Sbjct: 61 GEQEPGETTVPARKLVDIAKSLPAEADIRFEVD---GERMLVRSGRSRFTLSTLPASEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E+ E+ VL+ L++RT F+MA +++RYYLNG+ F + +L AVATDGH Sbjct: 118 NLEEDAAGSRLEMKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKPG--RLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + ++ A + + S+I+PRK V E+ RIL + ++++ + + + + +++ + Sbjct: 176 RLALCDAELDAPVEE-ASVILPRKGVMELSRILGDSGEAARLTIGRNHVRIVVGAITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y VIP +++ + LRQA+ RV+I+S+ + + V++ LS L + Sbjct: 235 KLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRIVA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V +N P++I FN YLL++++ + + + SNSS + Sbjct: 295 NNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGGT-----QAELEMGDSNSSALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 350 FDPESKA---------AVYVVMPMRL 366 >gi|83642916|ref|YP_431351.1| DNA polymerase III subunit beta [Hahella chejuensis KCTC 2396] gi|83630959|gb|ABC26926.1| DNA polymerase III, beta subunit [Hahella chejuensis KCTC 2396] Length = 367 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 212/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+T+ R ++ L ++E++ T+PV +VLL A DG L I + E+E+ I Sbjct: 1 MKLTITREALVTSLQMISGVVEKRQTMPVLANVLLDARDGKLVITGTNMEVELVAEISDV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ ITV A DI R L +GA I ++ +N+ +G S+F L + P FP Sbjct: 61 NIEHESRITVPAKKFTDICRALPEGAAIGIELKD---GRLNVRYGSSHFILSTLPAEHFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +EE L LK L++ T FAMA +++RYYLNG+ ++E+ L+ VATDGH Sbjct: 118 NVEEEPESVKVTLPQRELKRLIDATAFAMAQQDVRYYLNGMLMELDEQGLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A V + +++ IVPRK + E+ R+L+ D S + ++ + ++ + + Sbjct: 176 RLALANVSLQTGVSEKRQPIVPRKGILELGRLLNDTDESCTLVFGDNHVRASVGHFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG+FP+YQ VIP S DK + + L+ + R SI+S I+ V+L L + Sbjct: 236 KLIDGKFPDYQRVIPRSGDKVMLADRVLLKGVLSRASILSHESIRGVRLQFEEGLLKVFA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD +A +S+ V Y + I FN YL+++++ + D++V L ++NSS + Sbjct: 296 NNPDQEEAEDSLEVEYPHEALQIGFNVGYLIDVLNALD-----DEQVKVTLSNANSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D +A YV+MPMR+ Sbjct: 351 EGVD---------TRDAVYVVMPMRL 367 >gi|304414286|ref|ZP_07395654.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola LSR1] gi|304283500|gb|EFL91896.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola LSR1] Length = 375 Score = 368 bits (945), Expect = e-100, Method: Composition-based stats. Identities = 130/394 (32%), Positives = 211/394 (53%), Gaps = 28/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++R +L+ L + + +P+ ++LLQ +D L + + EIE+ I S Sbjct: 1 MKFTIKREHLLKPLQQVSGPLSARTALPILANLLLQVSDNTLTLTGTDLEIEMVATIALS 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 GS TV A +DI R L + A+I+ E + ++I G S F L + Sbjct: 61 QSHKTETGSTTVPARKFFDICRGLPEDAEITVTLETK---RLSIRSGHSRFSLSILSARD 117 Query: 118 FPSTKEE--EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 FP+ + E ++ + LK L++ T FAMA +++RYYLNG+ F + E KLCA+ Sbjct: 118 FPNLADLKKEKEVELTVSPAALKCLIDSTQFAMAHQDVRYYLNGMLFEVEGE--KLCAIT 175 Query: 176 TDGHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 TDGHRLAV I AQ K S+IVPRKAV E+ R+LS + + + + + I ++ Sbjct: 176 TDGHRLAVCSTSIIQKDTAQELKKYSVIVPRKAVIELARLLSGGEDRLCLQIGSNNIRVH 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + +L+DG FP+Y+ V P + K + NC L+QA R +I+S+ + + V+L +S Sbjct: 236 LNGFIFTSKLVDGRFPDYKRVFPKNPSKIVIANCEQLKQAFSRAAILSNAKFRGVRLHIS 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + KL +T +NP+ +A E+++V Y ++I FN YLL++++ + D+ V L Sbjct: 296 AGKLKITANNPEQEEAEETLDVDYQGEDIEISFNVGYLLDVLNALKCDK-----VKLLLI 350 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S SSV I + Y++MPMR+ Sbjct: 351 DSVSSVQIENIENQI---------TTYIVMPMRL 375 >gi|260431697|ref|ZP_05785668.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis ITI-1157] gi|260415525|gb|EEX08784.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis ITI-1157] Length = 373 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 148/388 (38%), Positives = 236/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQVLFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++++L+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGPEGGKVLRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ A MP +IVPRK VGE+ ++L D + VS+SE+++ +++ Sbjct: 180 GHRLARIDADLPAGAEDMPGVIVPRKTVGELRKLLEDDDMDIAVSVSETKVRFATPDITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP +N ++L V+ QAVDRV+ +SS R +AVKL L +DKL + Sbjct: 240 TSKVIDGTFPDYTRVIPQNNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLENDKLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYL EI + +V + VF +S+ Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLQEI-----ASQVDRENAVFLFNSAGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373 >gi|89052493|ref|YP_507944.1| DNA polymerase III subunit beta [Jannaschia sp. CCS1] gi|88862042|gb|ABD52919.1| DNA polymerase III, beta subunit [Jannaschia sp. CCS1] Length = 372 Score = 368 bits (944), Expect = 1e-99, Method: Composition-based stats. Identities = 146/387 (37%), Positives = 231/387 (59%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ER+ +L + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKLSIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGETVSFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++IVRKL DG+ +S E+ + + I G S+F L + P +FP Sbjct: 61 VERAGATTVSAVTLHEIVRKLPDGSLVS-LTEDTTTSRLTIEAGRSSFQLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 +Y +F + L+ L +++ FA++TEE RYYLNG++FHI E D L AVATDG Sbjct: 120 MASTDYAANFSAKAPELRRLFDKSKFAISTEETRYYLNGVYFHIAEGDNGKALRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + +MP +IVPRK VGE+ ++L D+ + VS+SE++I ++++ Sbjct: 180 HRLARIDSALPDGAQEMPGVIVPRKTVGELRKLLDDDDAQIAVSVSETKIRFATPDITLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N + + V+ + +AVD V+ +SS R +AVK++L D+L ++ Sbjct: 240 SKVIDGTFPDYTRVIPAGNTRRMEVDAGDFAKAVDLVATVSSERSRAVKMALDEDRLMLS 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V+ PD G A + V Y + ++I FN KYLLEI + +V + VF S Sbjct: 300 VNAPDSGNAEAELVVAYADEKLEIGFNAKYLLEI-----ASQVDRENAVFMFSSPAEPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + DS A YV+MPMR+ Sbjct: 355 MREGNDDS---------AIYVVMPMRV 372 >gi|302381118|ref|YP_003816941.1| DNA polymerase III subunit beta [Brevundimonas subvibrioides ATCC 15264] gi|302191746|gb|ADK99317.1| DNA polymerase III, beta subunit [Brevundimonas subvibrioides ATCC 15264] Length = 372 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 139/387 (35%), Positives = 212/387 (54%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS +L+ LGH ++ER+NTIP+ +VLL A L A+ ++EI A+ Sbjct: 1 MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEIVDEADAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G IT AH LY+IVRKL DGA+++ N + + G S F L P +FP Sbjct: 61 VQVEGQITAPAHTLYEIVRKLPDGAEVALTY-NGDDPRLTVQAGRSKFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 ++ F L L L+++T FA++TEE RYYLNG++ H E L AVATDG Sbjct: 120 MSTDQSGARFTLMKDDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEGGIPLLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE A P +IVPRK + ++ R+L V++S+S +I S++ Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTIDQVRRLLDDGTGPVEISVSPQKIRFEFGQASLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP NDK+ ++ AVDRV+ +S+ + ++VKL+ D++ +T Sbjct: 240 SKVIDGAFPDYMRVIPKGNDKQADIDNAVFASAVDRVATISAEKSRSVKLAFELDRVTLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+ +E + + Y+E P +I FN +YLL++ I+ + F S Sbjct: 300 VRNMEAGQGVEEVEIGYSEAPFEIGFNARYLLDVAGQITG-----ENATFLFADPASPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + YVLMP+R+ Sbjct: 355 VLDPGDPGVQ---------YVLMPLRV 372 >gi|329847539|ref|ZP_08262567.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19] gi|328842602|gb|EGF92171.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19] Length = 373 Score = 367 bits (943), Expect = 1e-99, Method: Composition-based stats. Identities = 136/387 (35%), Positives = 220/387 (56%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ER +L+ LGH ++ER+NTIP+ +VLL A G + A+ ++EI A+ Sbjct: 1 MQFTIERGALLKALGHVQNVVERRNTIPILSNVLLSAERGQVSFSATDLDMEIVDTAEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G IT AH LY+IVRKL DGA + + +S G S F L P +FP Sbjct: 61 VSVPGQITAPAHTLYEIVRKLPDGADVELKFSAGDDPRLAVSAGRSRFALPVLPAGDFPI 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + SF + LK L+++T FA++TEE RYYLNG++ H + L AVATDG Sbjct: 121 MSSDHEGVSFSILRDDLKRLIDKTRFAVSTEETRYYLNGMYLHTLSEDGSNYLRAVATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE+ A P +I+PRK + + R+L V++++S ++I + + S++ Sbjct: 181 HRLALAEMPAPEGSAGGPGVIIPRKTIDQARRLLDDGTGYVELTISPAKIRFQLGNASLT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +NDK + ++ L +AVDRVS +S+ + ++VK+++ +L ++ Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKVMMIDTGILAKAVDRVSTISAEKSRSVKMAIEPGRLTLS 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + Y+ +DI FN +Y+L+++ I ++V R ++S Sbjct: 301 VRNIEAGQAVEEAEIDYDNDSIDIGFNARYILDVMGQIGG-----EQVELRFADASSPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + YVLMP+R+ Sbjct: 356 VLDPADNGVQ---------YVLMPLRV 373 >gi|329891033|ref|ZP_08269376.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC 11568] gi|328846334|gb|EGF95898.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC 11568] Length = 372 Score = 367 bits (943), Expect = 2e-99, Method: Composition-based stats. Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS +L LGH ++ER+NTIP+ +VLL A L A+ ++E+ A Sbjct: 1 MQLTIERSALLRALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEMVDEAEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+V G IT AH LY+IVRKL DGA++S + + ++ G S F L P +FP Sbjct: 61 VNVEGQITAPAHTLYEIVRKLPDGAEVSLTYSGDD-PRLVVAAGRSRFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E + L L L+++T FA++TEE RYYLNG++ H + L AVATDG Sbjct: 120 MSTEASGARYTLPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVADGGIPLLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE A P +IVPRK V ++ R+L V+V +S +I S++ Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDGAGPVEVQVSAQKIRFEFGEASLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP NDK+ ++ + +AVDRV+ +S+ + ++VKL+ +D++ +T Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNSLFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A E + + Y++ P +I FN +YLL++ I+ + F+ S Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ETAHFKFADPASPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V YVLMP+R+ Sbjct: 355 VLDP---------ADVGVQYVLMPLRV 372 >gi|52424541|ref|YP_087678.1| DNA polymerase III subunit beta [Mannheimia succiniciproducens MBEL55E] gi|52306593|gb|AAU37093.1| DnaN protein [Mannheimia succiniciproducens MBEL55E] Length = 370 Score = 367 bits (942), Expect = 2e-99, Method: Composition-based stats. Identities = 118/385 (30%), Positives = 202/385 (52%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ Sbjct: 6 MQFIVSRDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTITGTDLEVELSTQAKLI 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A DI R L D A+I E E + + F L + P E+P+ Sbjct: 66 SGTEGKFTIPAKKFLDICRSLPDEAEIHVTFEEE---RAIVRSARTKFNLATLPAEEYPN 122 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGHR Sbjct: 123 LADWQSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGHR 180 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + Q + S+IVPRK V E+ R+L + D+ ++ + + + + + ++ + + Sbjct: 181 LAVCTIALE-QDLQNHSVIVPRKGVLELARLLEATDAPARLQIGTNNLRVQLANVVFTSK 239 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ V+P + D L + L+QA R +I+S+ R ++V+L L +++ +T Sbjct: 240 LIDGRFPDYRRVLPRNADHILEADWDVLKQAFVRAAILSTERFRSVRLQLDQNQMKITAT 299 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E ++V Y+ M++ FN Y+L++++ + V RL ++SS I Sbjct: 300 NPEQEEAEEIIDVSYSGNEMEVGFNVSYILDVLNALKCQ-----RVRMRLTDASSSCLIE 354 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 355 NCED---------ASAEYVIMPMRL 370 Score = 41.0 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 14/183 (7%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E F ++ L +++ +++ LN + I ++ L + TD Sbjct: 3 ERAMQFIVSRDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTI--TGTDLEVELST 60 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM-SVRLID 243 + +++ + +P K +I R L ++ + V+ E R + L Sbjct: 61 QAKLISGTEGKFT--IPAKKFLDICRSLPD-EAEIHVTFEEERAIVRSARTKFNLATLPA 117 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-MSSVRI----QAVKLSLSSDKLCMT 298 E+PN + ++ + LR+ ++ M++ +K + L Sbjct: 118 EEYPNLADW---QSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTV 174 Query: 299 VDN 301 + Sbjct: 175 ATD 177 >gi|315634816|ref|ZP_07890098.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter segnis ATCC 33393] gi|315476368|gb|EFU67118.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter segnis ATCC 33393] Length = 366 Score = 366 bits (941), Expect = 2e-99, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 1 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITGTDLEVELSTQTPLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DI R L D A+I+ E + + S F L + P ++P Sbjct: 61 HAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEED---RAIVRSDRSKFNLSTLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L + ++ + + + + + +++ + Sbjct: 176 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSEQPARLQIGTNNLRIQLNNITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + + +V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 350 EDCED---------ASAEYVIMPMRL 366 >gi|120596835|ref|YP_961409.1| DNA polymerase III subunit beta [Shewanella sp. W3-18-1] gi|146291113|ref|YP_001181537.1| DNA polymerase III subunit beta [Shewanella putrefaciens CN-32] gi|120556928|gb|ABM22855.1| DNA polymerase III, beta subunit [Shewanella sp. W3-18-1] gi|145562803|gb|ABP73738.1| DNA polymerase III, beta subunit [Shewanella putrefaciens CN-32] gi|319424419|gb|ADV52493.1| DNA polymerase III, beta subunit [Shewanella putrefaciens 200] Length = 366 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 121/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQAVVH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK++++ T F+MA +++RYYLNG+ F L+ A+ATDGH Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNMLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L S D + +++ ++ I + + Sbjct: 176 RLALSHRVIDAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEIIDVDYNNQSLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|77456230|ref|YP_345735.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf0-1] gi|77380233|gb|ABA71746.1| DNA polymerase III, beta chain [Pseudomonas fluorescens Pf0-1] Length = 367 Score = 366 bits (941), Expect = 3e-99, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 212/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL + L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITV A L DI + L + A I + + ++ + G S F L + P ++FP Sbjct: 61 EPAETGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + L S L+ L+ERT FAMA +++RYYLNG+ ++ ++ AVATDGH Sbjct: 118 TVEEGPGSLTTSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGVIR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + +IVPRK + E+ R+L+ D +V + L + I + + Sbjct: 176 RLAMCSMQADIGQQDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V YN ++I FN YLL+++ +++ ++V L SNSS + Sbjct: 296 NNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D ++ YV+MPMR+ Sbjct: 351 QESDND---------DSAYVVMPMRL 367 >gi|332991510|gb|AEF01565.1| DNA polymerase III subunit beta [Alteromonas sp. SN2] Length = 366 Score = 366 bits (940), Expect = 3e-99, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R L+ L +ER++T+P+ +VL++ ++ L + + E+E+ ++ Sbjct: 1 MKFSISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L+DI+R + +G I F + G + I G + L + +++P Sbjct: 61 GEFTEGEITVPAKKLFDIIRGISEGTDIHFSID---GNKALIKAGRGRYTLSTLSANDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ E FE+ S +K L++ T F+MA +++RYYLNG+ E ++ VATDGH Sbjct: 118 NLEDWEGEVEFEITCSDMKRLIDSTSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + +I+PRK V EI R+++ D S+KV + + + + + Sbjct: 176 RLALCRLSYETTLPAR-QVIIPRKGVLEISRLITEDDKSLKVQIGANHLRIFSNDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DKE+ + L+ A R +I+S+ + + V+L+LSS +L +T Sbjct: 235 KLVDGRFPDYRRVLPQDGDKEIIASKAVLKDAFSRAAILSNEKFRGVRLNLSSGELKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN YL+++++++ S D+V L SN+S I Sbjct: 295 NNPEQEEAEEIVDVNYQGDDLEIGFNVAYLIDVLNSLGS-----DDVKISLSDSNASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ A YV+MPMR+ Sbjct: 350 EDAADDA---------ALYVIMPMRL 366 >gi|163751708|ref|ZP_02158927.1| DNA polymerase III, beta subunit [Shewanella benthica KT99] gi|161328447|gb|EDP99603.1| DNA polymerase III, beta subunit [Shewanella benthica KT99] Length = 366 Score = 366 bits (940), Expect = 4e-99, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHTLKMTGTDLEVELVGQVQLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G T+ A DIV+ L D +I ++ + + G S F L + P E+P Sbjct: 61 GDVEEGRTTIPAKKFLDIVKSLPDQVEIKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F + +LK+L++ T F+MA +++RYYLNG+ + L+ A+ATDGH Sbjct: 118 NVEAFESDIEFTIKQGILKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + K +IVPRK V E+ R+ +D V +++ ++ I S ++ Sbjct: 176 RLALSHRKIEANLPK-KQVIVPRKGVVELQRLYEGEDLDVTIAIGDNAIRATTSSAVLTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ L +T Sbjct: 235 KLIDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ P++I FN YLL++++N+ S DEV L NSS I Sbjct: 295 NNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DEVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ N+ YV+MPMR+ Sbjct: 350 ENHIEE---------NSMYVVMPMRL 366 >gi|315122098|ref|YP_004062587.1| DNA polymerase III subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] gi|313495500|gb|ADR52099.1| DNA polymerase III subunit beta [Candidatus Liberibacter solanacearum CLso-ZC1] Length = 370 Score = 366 bits (939), Expect = 4e-99, Method: Composition-based stats. Identities = 278/386 (72%), Positives = 319/386 (82%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I VERS+ILE L H CRIIER+ TIPV+CHV LQ DG L++KASGPEIEIT IPA Sbjct: 1 MEIIVERSNILEPLNHVCRIIERRTTIPVACHVFLQTIDGSLKMKASGPEIEITEVIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++V GS TVSAHLLYDIVRK +G++I F K + GTEV + GDS FYLQSF ESEFP+ Sbjct: 61 INVGGSATVSAHLLYDIVRKFPEGSEILFSKSDAQGTEVKVVSGDSQFYLQSFSESEFPN 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 KEE+Y YSFEL SSVLK L+ERTHFAMATEEIRYYLNGIFFHINEED LCAVATDGHR Sbjct: 121 IKEEDYEYSFELESSVLKILIERTHFAMATEEIRYYLNGIFFHINEEDSTLCAVATDGHR 180 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 LAVA+V++ IAKMPSIIVPRKAVGEI +I+S+ K SVK+S+SESRIHLNI LSMS+ Sbjct: 181 LAVAKVNVP--IAKMPSIIVPRKAVGEIQKIISTVKFLSVKISISESRIHLNIGRLSMSI 238 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDGEFP+YQNVIP +NDK LRVNC++LRQAVDRVS +SSVR QAVKLSLSS+KLCMTV Sbjct: 239 RLIDGEFPHYQNVIPHNNDKVLRVNCSSLRQAVDRVSTISSVRNQAVKLSLSSEKLCMTV 298 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DNP+MGKAIE ++V Y++CPMDICFNYKYLLEII NIS DD+VVFRLDSS+SS I Sbjct: 299 DNPEMGKAIEYLDVNYHDCPMDICFNYKYLLEIIGNIS-----DDDVVFRLDSSSSSALI 353 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +G + +AFYVLMPMRI Sbjct: 354 QGFEN---------KDAFYVLMPMRI 370 >gi|254510311|ref|ZP_05122378.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11] gi|221534022|gb|EEE37010.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11] Length = 373 Score = 366 bits (939), Expect = 5e-99, Method: Composition-based stats. Identities = 147/388 (37%), Positives = 236/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQALFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ ++ G + + G SNF L + P+ +FP Sbjct: 61 VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 EY +F ++++L+ L +++ FA++TEE RYYLNG++ H+ ++ L VATD Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGSDGGKVLRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ A +P +IVPRK VGE+ ++L + + VS+SE++I +++ Sbjct: 180 GHRLARIDADLPDGAADLPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKIRFATPDITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N ++L V+ QAVDRV+ +SS R +AVKL L +DKL + Sbjct: 240 TSKVIDGTFPDYTRVIPQGNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLDADKLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +S+ Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSAGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + N +A YV+MPMR+ Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373 >gi|16124411|ref|NP_418975.1| DNA polymerase III subunit beta [Caulobacter crescentus CB15] gi|221233094|ref|YP_002515530.1| DNA polymerase III subunit beta [Caulobacter crescentus NA1000] gi|239977224|sp|B8GXP6|DPO3B_CAUCN RecName: Full=DNA polymerase III subunit beta gi|239977225|sp|P0CAU5|DPO3B_CAUCR RecName: Full=DNA polymerase III subunit beta gi|1049324|gb|AAB51448.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15] gi|13421269|gb|AAK22143.1| DNA polymerase III, beta subunit [Caulobacter crescentus CB15] gi|220962266|gb|ACL93622.1| DNA polymerase III, beta chain [Caulobacter crescentus NA1000] Length = 372 Score = 365 bits (938), Expect = 5e-99, Method: Composition-based stats. Identities = 136/387 (35%), Positives = 214/387 (55%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ ++LL A L A+ ++EI A Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +DV G IT AH LY+IVRKL DGA +S + + I G S F L P +FP Sbjct: 61 IDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDD-PRLVIQAGRSRFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 + + ++ L L+++T FA++TEE RYYLNG++ H E KL AVATDG Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE+ +P +IVPRK + E R++ S +V + +S ++ + +++ Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N K L ++ +AVDRV+ +S+ + ++VKL++ ++ +T Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + V Y+ P +I FN +YLL++ I+ + FR S Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAG-----PQAEFRFADPASPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + YVLMP+R+ Sbjct: 355 VVDPVDPGVK---------YVLMPLRV 372 >gi|114045515|ref|YP_736065.1| DNA polymerase III subunit beta [Shewanella sp. MR-7] gi|113886957|gb|ABI41008.1| DNA polymerase III, beta subunit [Shewanella sp. MR-7] Length = 366 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVVH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L + D + +++ ++ I + + Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + + +QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN P++I FN YLL++++N+ S D+V L NSS + Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|312882234|ref|ZP_07741980.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC BAA-2122] gi|309370078|gb|EFP97584.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC BAA-2122] Length = 366 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++RS +L+ L + + T+P+ ++LL+ DG+L I A+ E+E+ + Sbjct: 1 MKFSIQRSHLLKPLQQVSGALGGRPTLPILGNLLLKVADGMLLITATDLEVELISRVNLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ITV + DI R L D A I+F E G V I G S F L + P +FP Sbjct: 61 GEFEAGTITVPSRKFLDICRGLPDEAVITFVLE---GDRVQIRSGRSRFSLSTLPAHDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ LVE+T F+MA +++RYYLNG+ F + + L +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQAELRTLVEKTQFSMANQDVRYYLNGMLFEL--DGTTLSSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+A+V++ + A+ IIVPRK V E++++L + + V + + S + + + + Sbjct: 176 RMAMAQVNLEGEFAQQ-QIIVPRKGVLELVKLLDAPEQKVVLQVGSSNVRAEVNNYVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+ + K L +C L+ A R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVMSLTPSKTLLADCDQLKHAFSRAAILSNEKFRGVRVNLTDSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y ++I FN Y+L++++ + + EV + + SS I Sbjct: 295 NNPEQEEAEEILDVNYQGEAIEIGFNVGYVLDVLNTLKCN-----EVRVSMTDATSSTLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S A YV+ P+R+ Sbjct: 350 ENAQDNS---------AVYVVSPIRL 366 >gi|261868624|ref|YP_003256546.1| DNA polymerase III subunit beta [Aggregatibacter actinomycetemcomitans D11S-1] gi|261413956|gb|ACX83327.1| DNA polymerase III, beta subunit [Aggregatibacter actinomycetemcomitans D11S-1] Length = 367 Score = 365 bits (938), Expect = 6e-99, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 2 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLL 61 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DI R L D A+I+ E + + S F L + P ++P Sbjct: 62 HAEQDGKFTIPAKKFLDICRSLPDNAEIAVTFEED---RAIVRSDRSKFNLSTLPAEDYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 119 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L D ++ + + + + + +++ + Sbjct: 177 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + + +V RL ++SS I Sbjct: 296 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRMRLTDASSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 351 EDCED---------ASAEYVIMPMRL 367 >gi|251791867|ref|YP_003006587.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus NJ8700] gi|247533254|gb|ACS96500.1| DNA polymerase III, beta subunit [Aggregatibacter aphrophilus NJ8700] Length = 366 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 1 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTKTPLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DI R L + A+I+ E + + S F L + P ++P Sbjct: 61 HAEQDGKFTIPAKKFLDICRSLPENAEITVTFEED---RAIVRSDRSKFNLSTLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L D ++ + + + + + +++ + Sbjct: 176 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + + +V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 350 EDCED---------ASAEYVIMPMRL 366 >gi|254417831|ref|ZP_05031555.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3] gi|196184008|gb|EDX78984.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3] Length = 372 Score = 365 bits (937), Expect = 7e-99, Method: Composition-based stats. Identities = 139/387 (35%), Positives = 218/387 (56%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ERS +L+ LGH ++ER+NTIP+ +VLL A L A+ ++E+ A+ Sbjct: 1 MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLAFAATDLDMEMVDEAEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+V G IT AH LY+IVRKL +GA++S + + +S G S F L P +FP Sbjct: 61 VNVEGQITAPAHTLYEIVRKLPEGAEVSLLYSGDD-PRLVVSAGRSRFNLPVLPAGDFPI 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + S+ + L L+++T FA++TEE RYYLNG++ H E L AVATDG Sbjct: 120 MSTDSAGASYVMPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEAGVALLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE A P +IVPRK V ++ R+L V++++S +I I S++ Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDAAGPVEITVSAQKIRFQIGEASLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP NDK+ ++ +AVDRV+ +S+ + ++VKL+ +D++ +T Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNALFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A E + + Y++ P +I FN +YLL++ I+ + FR S Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ENAAFRFADPASPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + YVLMP+R+ Sbjct: 355 VLDPGDPGVQ---------YVLMPLRV 372 >gi|149184745|ref|ZP_01863063.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21] gi|148832065|gb|EDL50498.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21] Length = 374 Score = 364 bits (936), Expect = 9e-99, Method: Composition-based stats. Identities = 151/391 (38%), Positives = 225/391 (57%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ER+ +L L H ++ER+NTIP+ +VL++A L + A+ ++++ I A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAEGNGLRVMATDLDLQVVEHIEAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 SV+ G+ITVSAHLL+DI RKL +G+Q+S +++ G S F L + P +FP Sbjct: 61 SVESDGAITVSAHLLFDIARKLPEGSQVSLETAE---NRMDVKAGRSRFKLPTLPRDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178 E + SF L + L +++RT FA++TEE RYYLNGIF H+++ED L A ATDG Sbjct: 118 MIVEGDLPTSFSLPAKTLAEMIDRTRFAISTEETRYYLNGIFLHVSDEDQPVLKAAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES--- 234 HRLA + MP +IVPRKAV E+ ++L K D V++ LS S+I + Sbjct: 178 HRLARFTLARPEGAEGMPDVIVPRKAVAELRKLLDEKMDGDVQIDLSASKIRFTLGGEGG 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + ++ +LIDG FP+Y VIP NDK L+++ + VDRV+ +++ + +AVK+ L D+ Sbjct: 238 VVLTSKLIDGTFPDYSRVIPTGNDKLLKIDPKSFFAGVDRVATIATEKTRAVKMGLDKDR 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + +TV +PD G A E + Y +I FN YL +I+ I S D+V L + Sbjct: 298 VTLTVTSPDNGTASEELAAEYGSDGFEIGFNAGYLKDILSQIDS-----DQVEIHLADAG 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR D A YVLMPMR+ Sbjct: 353 APTLIRKNDDSP---------ALYVLMPMRV 374 >gi|114326983|ref|YP_744140.1| DNA polymerase III subunit beta [Granulibacter bethesdensis CGDNIH1] gi|114315157|gb|ABI61217.1| DNA polymerase III, beta chain [Granulibacter bethesdensis CGDNIH1] Length = 387 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 146/391 (37%), Positives = 215/391 (54%), Gaps = 22/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ER+ +L+ L H ++E++NTIP+ +VLL+ DG L A+ EI I +PA Sbjct: 13 MKFKAERAVLLKALAHVQSVVEKRNTIPILANVLLEVKDGSLRFTATDMEIAIVEDVPAE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++T A LY+IVRKL DGA + + ++ + G L P +FPS Sbjct: 73 GLRDGAVTAPAGTLYEIVRKLPDGADVELDHQAGDQ-QLMLKSGRYATKLVVLPTDDFPS 131 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE---EDLKLCAVATD 177 + F LA +VL+ L++RT FA++TEE RYYLNGI+FH + + L AVATD Sbjct: 132 MTTGALPHQFRLAGNVLRGLIDRTRFAISTEETRYYLNGIYFHAAQGGPDGAALRAVATD 191 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA E + MP +IVPRK V E+ ++L +V V+LS++RI +++ Sbjct: 192 GHRLARVEEPLPEGALGMPGVIVPRKTVAELRKLLDEVTDTVDVALSDTRIQFVAGPVTL 251 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP Y+ VIP NDK LRV + AV RV+ +SS R + VK++L + L + Sbjct: 252 TSKLIDGTFPEYERVIPKDNDKVLRVGKNDFSAAVARVAAISSERSRPVKMALDRNLLVL 311 Query: 298 TVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + +PD G A E ++ + Y ++I F +YL +I D I +EV FR + Sbjct: 312 SASSPDQGTATEELDGDRIQYEAGALEIGFQARYLNDITDQI------AEEVEFRFADGS 365 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ S A YVLMPMR+ Sbjct: 366 APTVVQDAADSS---------ALYVLMPMRV 387 >gi|88860615|ref|ZP_01135252.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2] gi|88817210|gb|EAR27028.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2] Length = 368 Score = 364 bits (935), Expect = 1e-98, Method: Composition-based stats. Identities = 129/387 (33%), Positives = 224/387 (57%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL+ DG L + + EIE+ + S Sbjct: 2 MQITIPRDQFLKPLIQVSGAIERKHTLPILSNVLLEIADGKLMMTGTDLEIELVACVTLS 61 Query: 61 --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+ +T+ A L DI + L DG++I+ ++ ++V ++ G S F L S P +F Sbjct: 62 HFVEDS-KLTLPAKKLLDICKSLPDGSEITLSAQD---SQVLLTSGKSRFSLASLPALDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ + F++ + L+ L+E THF+MA +++RYYLNG+ F ++ ++K VATDG Sbjct: 118 PNLEQWDGEVDFQITRNELRKLLESTHFSMANQDVRYYLNGMSFEVDNSEIK--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+++ + + +I+PRK V EI+R++ S D+ V + + + + + + Sbjct: 176 HRLALSQKKLDYSLNTQRQLIIPRKGVQEIMRLMVSDDNLVTIQFGANHFRIIDQEFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+ S+ +L +T Sbjct: 236 SKLVDGRFPDYRRVLPRGGDKVVTANREWLRSAFSRVSILSNEKFRGVRLNFSAGELKIT 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + V Y+ ++I FN Y+L++++ + + ++V F L SNSS Sbjct: 296 ANNPEQEQAEEIVEVVYSGPDLEIGFNVSYVLDVLNTLKT-----EDVSFTLSDSNSSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G D A YV+MPMR+ Sbjct: 351 VEGTGDDE---------AMYVVMPMRL 368 >gi|113968348|ref|YP_732141.1| DNA polymerase III subunit beta [Shewanella sp. MR-4] gi|117918469|ref|YP_867661.1| DNA polymerase III subunit beta [Shewanella sp. ANA-3] gi|113883032|gb|ABI37084.1| DNA polymerase III, beta subunit [Shewanella sp. MR-4] gi|117610801|gb|ABK46255.1| DNA polymerase III, beta subunit [Shewanella sp. ANA-3] Length = 366 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVIH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L + D + +++ ++ I + + Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + + +QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN P++I FN YLL++++N+ S D+V L NSS + Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|110832863|ref|YP_691722.1| DNA polymerase III subunit beta [Alcanivorax borkumensis SK2] gi|110645974|emb|CAL15450.1| DNA polymerase III, beta subunit [Alcanivorax borkumensis SK2] Length = 366 Score = 364 bits (934), Expect = 1e-98, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +L+ L ++E++ T+PV +VLL+ DG L + + E+E+ +P Sbjct: 1 MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A L DI + L A I F + G + + G S F L + P SEFP Sbjct: 61 GELEPGETTVPARKLVDIGKSLPAEADIRFEVD---GERMLVRSGRSRFTLSTLPASEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E+ S E+ VL+ L++RT F+MA +++RYYLNG+ F + +L AVATDGH Sbjct: 118 NLEEDAAGSSLEIKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELK--SGRLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + ++ + + S+I+PRK V E+ RIL ++++ + + + + +++ + Sbjct: 176 RLALCDAELDVPVEE-ASVILPRKGVMELSRILGDSGEVARLTIGRNHVRIVVGAITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y VIP +++ + LRQA+ RV+I+S+ + + V++ LS L + Sbjct: 235 KLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRIVA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V +N P++I FN YLL++++ + + + SNSS + Sbjct: 295 NNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGGT-----QAELEMGDSNSSALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 350 FDPESKA---------AVYVVMPMRL 366 >gi|126668222|ref|ZP_01739183.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17] gi|126627371|gb|EAZ98007.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17] Length = 351 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 118/369 (31%), Positives = 201/369 (54%), Gaps = 20/369 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYD 76 ++E+K T+PV +VLL A D L + + E+E+ I P +D G ITV A L D Sbjct: 2 AGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARITPVHIDQPGRITVPARKLAD 61 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 I R L + + I ++ G +++ G S+F L + P FP+ ++E + EL Sbjct: 62 ICRALGEESPIEL---DQQGDRLHLRCGKSHFTLATLPAEHFPNVEDEAESFRLELPQKE 118 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 L+ + + T FAMA +++RYYLNG+ + + ++ VATDGHRLA+A D+ + Sbjct: 119 LRRMFDSTAFAMAQQDVRYYLNGLLLEVAADHVR--TVATDGHRLAMAHQDVETGCPEAR 176 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 +IVPRK V E+ R+L D+ V + + ++ + + S + + +LI+G+FP+Y VIP Sbjct: 177 QVIVPRKGVLELARLLDDVDTPVTLVIGDNHLRATVGSYTFTSKLIEGKFPDYNRVIPRG 236 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 DK + + L+ + R I+S I+ V+L+L++++L + +NPD +A +++ V Y Sbjct: 237 GDKVVLADRITLKNTLQRAGILSHENIRGVRLNLAANELQVFANNPDQEQAEDALPVDYQ 296 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I FN YL+++++ + DD+V L + NSS I + Sbjct: 297 GETLQIGFNVGYLIDVMNALD-----DDQVKVTLSNPNSSALIESQ---------TDARC 342 Query: 377 FYVLMPMRI 385 YV+MPMR+ Sbjct: 343 LYVVMPMRL 351 >gi|127510937|ref|YP_001092134.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4] gi|126636232|gb|ABO21875.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4] Length = 366 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQ 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV A DIV+ L D ++ +++ + + G S F L + P E+P Sbjct: 61 GEVQEGRTTVPAKKFLDIVKSLPDQVELKIEQQD---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L LK+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVDAFQADIEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + + + +IVPRK V E+ R+ +D V +S+ E+ I +S + Sbjct: 176 RLALSHRMVQDSLPE-KQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E +++ Y+ P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDIEYDNAPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHVEE---------DSMYVVMPMRL 366 >gi|114319168|ref|YP_740851.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1] gi|114225562|gb|ABI55361.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1] Length = 366 Score = 363 bits (933), Expect = 2e-98, Method: Composition-based stats. Identities = 129/385 (33%), Positives = 211/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R D+L+ L ++ER+ T+PV +V L+ DGL + A+ E+E+ ++P Sbjct: 1 MRIDIQREDLLKPLQAIIGVVERRQTLPVLANVRLELGDGLARLTATDLEVELVASLPCQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G IT+ A L DI R L D +QI + G ++ G S F L + ++PS Sbjct: 61 VTEGGDITLPARKLLDICRNLPDQSQIQLQVD---GERASLRAGRSRFTLATLSADDYPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + L L+ L+ERTHF+MA +++RYYLNG+ + ++ VATDGHR Sbjct: 118 IEDIGARETVRLPQGQLRKLIERTHFSMAVQDVRYYLNGLMVELEPAMARM--VATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AE I + +IVPRK V E+LR+L D + L ++ I + + + + + Sbjct: 176 LALAEQAIDTGVEAPRQVIVPRKGVQELLRLLDHSDEGADLELGDNHIRVKLGDVRFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ V+P + + VN +LR A+ RVSI+S+ + + V+ L L + Sbjct: 236 LIDGRFPDYRRVVPEATETPATVNREDLRHALLRVSILSNEKYRGVRFLLDGGTLKVASH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E ++V Y P+++ FN Y+L+ + + D++V L S SS I+ Sbjct: 296 NPEQEEAEEEVSVDYGGAPLEVGFNAGYVLDALGALD-----DEDVRLTLRDSASSGLIQ 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G D + + YV+MPMR+ Sbjct: 351 GVDDQT---------SRYVVMPMRL 366 >gi|294138803|ref|YP_003554781.1| DNA polymerase III subunit beta [Shewanella violacea DSS12] gi|293325272|dbj|BAJ00003.1| DNA polymerase III, beta subunit [Shewanella violacea DSS12] Length = 366 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 217/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV G ITV A DIV+ L D ++ ++ + + G S F L + P E+P Sbjct: 61 GDVVEGRITVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + LK+L++ T F+MA +++RYYLNG+ + L+ A+ATDGH Sbjct: 118 NVEAFQSDIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + + +IVPRK V E+ R+ +D V +++ ++ I S ++ Sbjct: 176 RLALSHRQIEATLPE-KQVIVPRKGVVELQRLFEGEDLDVTIAIGDNAIRATTSSAVLTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHIEE---------DSMYVVMPMRL 366 >gi|293391840|ref|ZP_06636174.1| DNA polymerase III, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] gi|290952374|gb|EFE02493.1| DNA polymerase III, beta subunit [Aggregatibacter actinomycetemcomitans D7S-1] Length = 366 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R ++L+ L C ++ + IPV +VLLQ + L I + E+E++ P Sbjct: 1 MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLF 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A D+ R L D A+I+ E + + S F L + P ++P Sbjct: 61 HAEHDGKFTIPAKKFLDLCRSLPDNAEITVTFEED---RAIVRSDRSKFNLSTLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E+ R+L D ++ + + + + + +++ + Sbjct: 176 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y+ M++ FN Y+L++++ + + +V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRIRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 350 EDCED---------ASAEYVIMPMRL 366 >gi|114561190|ref|YP_748703.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB 400] gi|114332483|gb|ABI69865.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB 400] Length = 366 Score = 363 bits (932), Expect = 3e-98, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ ++ L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSESSLKLTGTDLEVELVGQAAIH 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G TV A L DIV+ L + +++ +++ + + G S F L + P ++P Sbjct: 61 GDIDIGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + F L VLK++++ T F+MA +++RYYLNG+ F L+ A+ATDGH Sbjct: 118 NVEEFQADIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + + + +IVPRK V E+ R+L S D + +++ ++ I S + Sbjct: 176 RLALSHRTLDVSLPE-KQVIVPRKGVVEMARLLDSDDQDITIAIGDNAIRAITSSAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P +K + + L+QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGNKVVIASRNQLKQALTRASILSNEKFRGVRIQLETGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN YLL++++N++S DEV L NSS I Sbjct: 295 NNPEQEEAEEIIDVEYDSDNLEIGFNVSYLLDVLNNLAS-----DEVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHKEE---------DSMYVVMPMRL 366 >gi|254465740|ref|ZP_05079151.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I] gi|206686648|gb|EDZ47130.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I] Length = 373 Score = 363 bits (931), Expect = 3e-98, Method: Composition-based stats. Identities = 150/388 (38%), Positives = 235/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A ++ +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLAVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E L AVATD Sbjct: 120 MASSEYHSNFAAKAAVLRRLFDKSKFAISTEETRYYLNGVYLHVANGAEGGKALRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 GHRLARIDAELPLGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ QAVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFAQAVDRVATVSSERSRAVKLQLEEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V YN+ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYNDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +S A YV+MPMR+ Sbjct: 355 LMREGNDES---------AVYVVMPMRV 373 >gi|331007622|ref|ZP_08330764.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989] gi|330418562|gb|EGG93086.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989] Length = 369 Score = 362 bits (930), Expect = 5e-98, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 213/387 (55%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R +L L ++ER+ T+PV +VL+ + L + + E+EI +P Sbjct: 1 MKFSVSREALLVPLQLVAGVVERRQTLPVLANVLVVLENETLSLTGTDLEVEIVARLPLE 60 Query: 61 --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V G IT+ A L DI R L DGA + F + + +V + G S F L + P ++F Sbjct: 61 NPVQDTGEITIPAKKLVDICRSLPDGATVEFILQEDQ--KVIVKSGRSRFTLATLPSNDF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PST++ E F + S++K L++RT FAMA +++RYYLNG+ + + +L VATDG Sbjct: 119 PSTEKSEGDLQFSCSQSIIKRLIDRTAFAMAQQDVRYYLNGMLWEVEGN--RLRCVATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ ++ + + I+PRK V E+ R+L+ +++ + ++L I ++ + + + Sbjct: 177 HRLAMCVRELDIDVPEKSQAILPRKGVIELSRLLNDQEAQIDLTLGTHHIRVDTPNYTFT 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG+FP+Y+ V+P + N T L+QA R +I+S+ + + V+L+ + L + Sbjct: 237 SKLVDGKFPDYERVLPKGGTNVVLGNRTELKQAFARTAILSNEKYRGVRLNFTEGLLNIV 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E + + Y ++I FN YL +I +++ + V L +NSS Sbjct: 297 ANNPEQEEAEEQVVIDYKGDEIEIGFNVSYLQDITSVLNT-----ENVKITLSDANSSAL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ ++ YV+MPMR+ Sbjct: 352 LEEPEE---------GDSVYVVMPMRL 369 >gi|197106929|ref|YP_002132306.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1] gi|196480349|gb|ACG79877.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1] Length = 372 Score = 362 bits (929), Expect = 7e-98, Method: Composition-based stats. Identities = 132/387 (34%), Positives = 215/387 (55%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L LGH +ER+NTIP+ +VLL A L A+ ++EI A Sbjct: 1 MKLTIERAALLRALGHVQSAVERRNTIPILSNVLLSAERDRLTFSATDLDMEIIDEAMAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G IT AH LY+IVRKL +GA +S E + + G S F L P +FP Sbjct: 61 VDQPGQITAPAHTLYEIVRKLPEGADVSLSFTGED-PRLAVQAGRSRFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E + + + L L+++T FA++ EE RYYLNG++ H + + +L AVATDG Sbjct: 120 MSAEGFSGRMGVDVTDLIRLIDKTRFAISAEETRYYLNGLYLHTIVVDGSPRLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+A++ A P +IVPRK VGE R+L V++ +S +I + +++ Sbjct: 180 SRLALADMPAPEGAAGAPGVIVPRKTVGEARRLLEDAGEQVELQVSPQKIRFEFDGAALT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N++ + V+ QAVDRV+ +S+ + ++V++++ + K+ +T Sbjct: 240 SKVIDGNFPDYARVIPKDNNRIVMVDAKLFAQAVDRVATISAEKSRSVRMAIEAGKVVLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + + Y+ P ++ FN +YLL+I +D++ ++ R N Sbjct: 300 VRNMEAGQAVEELEIDYDGEPFELSFNARYLLDI-----TDQISGEQAELRFGGPNDPAL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y+LMP+R+ Sbjct: 355 VLDP---------ADADVQYILMPLRV 372 >gi|91791371|ref|YP_561022.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217] gi|91713373|gb|ABE53299.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217] Length = 366 Score = 361 bits (928), Expect = 8e-98, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + ++ + + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVKVSQDVISLTGTDLEVELVGQAAIH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D V G+ TV A L DIV+ L + +++ +++ + G S F L + P S++P Sbjct: 61 GDIVPGNTTVPAKKLLDIVKSLPEQSELHVEQQD---NRWLLRSGRSRFTLATLPASDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + VLK++++ T F+MA +++RYYLNG+ F LK A+ATDGH Sbjct: 118 NVEAFQAEIEFTIKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNTLK--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I + + +IVPRK V E+ R+L S D + +++ ES I ++ + Sbjct: 176 RLALSHRQIDVSLPE-KQVIVPRKGVVEMSRLLDSDDKDISIAIGESAIRAVTDTAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVVASRQQLKQALTRASILSNEKFRGVRIQLEPGLLRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y+ ++I FN YLL++++N++S ++V L NSS I Sbjct: 295 NNPEQEEAEEIIDVDYDSANLEIGFNVSYLLDVLNNLAS-----EDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHKEE---------DSMYVVMPMRL 366 >gi|119773156|ref|YP_925896.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B] gi|119765656|gb|ABL98226.1| DNA polymerase III, beta subunit [Shewanella amazonensis SB2B] Length = 366 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEATVH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DIV+ L + +I K + + + G S F L + P E+P Sbjct: 61 GDVQEGRTTVPAKKLLDIVKSLPEQTEI---KVEQQENKWLLRCGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + F L LK+L++ T F+MA +++RYYLNG+ L+ AVATDGH Sbjct: 118 NVEAFRPDIEFTLKQGTLKSLIDSTQFSMANQDVRYYLNGLLIETEGNVLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + + +IVPRK V E+ R+L ++D + +++ ES I + + Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVVELSRLLDAEDQDITLAIGESAIRATTATAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRILLEDGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN ++I FN YLL++++++ S DEV L SNSS I Sbjct: 295 NNPEQEEAEEIIDVDYNSTTLEIGFNVSYLLDVLNSLRS-----DEVRVTLIDSNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHVEE---------DSMYVVMPMRL 366 >gi|212632926|ref|YP_002309451.1| DNA polymerase III subunit beta [Shewanella piezotolerans WP3] gi|212554410|gb|ACJ26864.1| DNA polymerase III, beta subunit [Shewanella piezotolerans WP3] Length = 366 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSAHSLKLTGTDLEVELVGEVLLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V G TV A DIV+ L D ++ ++ + + G S F L + P E+P Sbjct: 61 GEVFEGRTTVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F L +K+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVEAFEAELEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + + +IVPRK V E++R + V +++ ++ I + + Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEGDELDVTIAIGDNAIRATTATAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRQQLKQALLRASILSNEKFRGVRVQLENNLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ YV+MPMR+ Sbjct: 350 ---------DNHVEQDSMYVVMPMRL 366 >gi|254490238|ref|ZP_05103428.1| DNA polymerase III, beta subunit [Methylophaga thiooxidans DMS010] gi|224464585|gb|EEF80844.1| DNA polymerase III, beta subunit [Methylophaga thiooxydans DMS010] Length = 367 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 136/385 (35%), Positives = 219/385 (56%), Gaps = 18/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV + I+ L C I+ER+ T+P+ +VLL+ + L + ++ E+E+ +P S Sbjct: 1 MQFTVSQETIVRPLQLVCSIVERRATLPILSNVLLRVHGNQLSMTSTDMELEMIATLPVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G ITVSA DIVR L A IS N + + G S F L + P +FP Sbjct: 61 VEEEGKITVSARKFLDIVRALPGNATISL---NAKDNKAVVKAGKSRFSLSTLPSDDFPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ Y+ L S LK+L++ T FAMA++++RYYLNG+ E+ L AVATDGHR Sbjct: 118 SEGANYIDEISLPQSALKSLLDETSFAMASQDVRYYLNGLLLE--REETTLRAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + +A+ S+IVPRKA+ E+ R+L+ D VK++ S +I + + + + + Sbjct: 176 LAMGSLTTANPVAEKNSVIVPRKAIIELGRLLNETDDDVKLAFSNQQIKVELPDIHFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ V+P DKE+ L+QA+ R +I+S+ + ++V+++L +D+L TV Sbjct: 236 LIDGQFPNYERVLPLGGDKEVLAERDELKQALSRAAILSNDKHRSVRINLDTDQLKATVT 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + A E ++V Y P++I FN YLL++++ I D++V SS + Sbjct: 296 NQEQESAEEEISVDYKGSPLEIAFNNAYLLDLLNAIP-----DEKVKILFTDETSSALVT 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ + YV+MPMR+ Sbjct: 351 PADQKFERQ--------YVVMPMRL 367 >gi|24371609|ref|NP_715651.1| DNA polymerase III, beta subunit [Shewanella oneidensis MR-1] gi|24345359|gb|AAN53096.1|AE015452_9 DNA polymerase III, beta subunit [Shewanella oneidensis MR-1] Length = 366 Score = 361 bits (927), Expect = 1e-97, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L C +ER++ +P+ ++L++ + L++ + E+E+ G Sbjct: 1 MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIH 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV A L DIV+ L + +++ +++ + + G S F L + P E+P Sbjct: 61 GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L VLK+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I AQ+ + +IVPRK V E+ R+L + D + +S+ ++ I + + Sbjct: 176 RLALSHRVIEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + + +QA+ R SI+S+ + + V++ L + L +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V YN P++I FN YLL++++N+ S D+V L NSS + Sbjct: 295 NNPEQEEAEEIIDVDYNNLPLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366 >gi|157373148|ref|YP_001471748.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] gi|157315522|gb|ABV34620.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3] Length = 366 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 113/386 (29%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G T+ A DIV+ L D ++ ++ + + G S F L + P E+P Sbjct: 61 GDVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + LK+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVEAFQADIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + + + +IVPRK V E+ R+ +D + +++ ++ I S + Sbjct: 176 RLALSHRMVEESLPE-KQVIVPRKGVVELQRLFEGEDLDITIAIGDNAIRATTGSAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLENNLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ N+ YV+MPMR+ Sbjct: 350 ENHIEE---------NSMYVVMPMRL 366 >gi|258542325|ref|YP_003187758.1| DNA polymerase III subunit beta [Acetobacter pasteurianus IFO 3283-01] gi|256633403|dbj|BAH99378.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-01] gi|256636462|dbj|BAI02431.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-03] gi|256639515|dbj|BAI05477.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-07] gi|256642571|dbj|BAI08526.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-22] gi|256645626|dbj|BAI11574.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-26] gi|256648679|dbj|BAI14620.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-32] gi|256651732|dbj|BAI17666.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-01-42C] gi|256654723|dbj|BAI20650.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO 3283-12] Length = 374 Score = 361 bits (926), Expect = 1e-97, Method: Composition-based stats. Identities = 148/390 (37%), Positives = 222/390 (56%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ER+ +L+ L H + E++NTIP+ +VL+QA +G L +KA+ EIE+ +PA Sbjct: 1 MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEEVPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ T A +LY+IVRKL DG + + + G + + G L +FPS Sbjct: 61 ITREGATTAPAAVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 ++ + F+L ++ L +L++RT FA++TEE RYYLNGIF H E D KL AVATDG Sbjct: 120 MGAGDFPHRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEAKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E D+ A A MP +IVPRK V E+ +++ V+++LSE+RI ++++ Sbjct: 180 HRLARVEADLPAGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP +N + LRV + AV RV+ +S R + VKL+L L ++ Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + G A E ++ + Y+ ++I F +YL +I D V+ EV F S S Sbjct: 300 ASSAEQGVAKEELDDNRISYDAEGLEIGFQARYLNDITDQ------VEKEVEFAFADSAS 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D S A YVLMPMR+ Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374 >gi|329113488|ref|ZP_08242269.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001] gi|326697313|gb|EGE48973.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001] Length = 374 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 147/390 (37%), Positives = 222/390 (56%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ER+ +L+ L H + E++NTIP+ +VL+QA +G L +KA+ EIE+ +PA+ Sbjct: 1 MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEGVPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ T A +LY+IVRKL DG + + + G + + G L +FPS Sbjct: 61 ITREGATTAPASVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 ++ Y F+L ++ L +L++RT FA++TEE RYYLNGIF H E D KL AVATDG Sbjct: 120 MGAGDFPYRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEPKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E D+ + A MP +IVPRK V E+ +++ V+++LSE+RI ++++ Sbjct: 180 HRLARVEADLPSGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP +N + LRV + AV RV+ +S R + VKL+L L ++ Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + G A E ++ + Y+ ++I F +YL +I D + EV F S S Sbjct: 300 ASSTEQGMAKEELDDNRISYDAEGLEIGFQARYLNDITDQVE------KEVEFAFADSAS 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D S A YVLMPMR+ Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374 >gi|157959832|ref|YP_001499866.1| DNA polymerase III subunit beta [Shewanella pealeana ATCC 700345] gi|157844832|gb|ABV85331.1| DNA polymerase III, beta subunit [Shewanella pealeana ATCC 700345] Length = 366 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 213/386 (55%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ ++ L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSNHSLKLTGTDLEVELVGEVQLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G TV A DIV+ L D ++ ++ + + G S F L + P E+P Sbjct: 61 GEILEGRTTVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F L +K+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + + +IVPRK V E++R + D V +++ ++ I + + Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ YV+MPMR+ Sbjct: 350 ---------DNHIEQDSMYVVMPMRL 366 >gi|254474541|ref|ZP_05087927.1| DNA polymerase III, beta subunit [Ruegeria sp. R11] gi|214028784|gb|EEB69619.1| DNA polymerase III, beta subunit [Ruegeria sp. R11] Length = 373 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYHSNFTANAAILRRLFDKSKFAISTEETRYYLNGVYMHVADAVEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLQLDDDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y++ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFLFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +S A YV+MPMR+ Sbjct: 355 LMREGNDES---------AVYVVMPMRV 373 >gi|163743747|ref|ZP_02151121.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10] gi|161383008|gb|EDQ07403.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10] Length = 373 Score = 360 bits (924), Expect = 2e-97, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 234/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A +++ +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYHSNFTANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A YV+MPMR+ Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373 >gi|126738626|ref|ZP_01754331.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6] gi|126720425|gb|EBA17131.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6] Length = 373 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G +++ G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTSDAATG-RLSVDAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H++ E L VATD Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDAPLPLGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLEEDRLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI + +V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + +S A YV+MPMR+ Sbjct: 355 LMREGNDES---------AVYVVMPMRV 373 >gi|167621943|ref|YP_001672237.1| DNA polymerase III subunit beta [Shewanella halifaxensis HAW-EB4] gi|167351965|gb|ABZ74578.1| DNA polymerase III, beta subunit [Shewanella halifaxensis HAW-EB4] Length = 366 Score = 360 bits (924), Expect = 3e-97, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEVQLE 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V G TV A DIV+ L D ++ ++ + + G S F L + P E+P Sbjct: 61 GEVVEGRTTVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F L +K+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I A + + +IVPRK V E++R + D V +++ ++ I + + Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + L+QA+ R SI+S+ + + V++ L ++ + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ YV+MPMR+ Sbjct: 350 ---------DNHIEQDSMYVVMPMRL 366 >gi|296532158|ref|ZP_06894919.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis ATCC 49957] gi|296267517|gb|EFH13381.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis ATCC 49957] Length = 375 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 149/391 (38%), Positives = 217/391 (55%), Gaps = 22/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK +V+R+ +L+ L H ++ER+NTIP+ +V+L A DG L + A+ EI I +P Sbjct: 1 MKFSVDRAVLLKALAHVQSVVERRNTIPILANVMLAAQDGTLTLTATDMEIAIVEDVPGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V G T A LY+IVRKL DGA++ + + G L P +FP Sbjct: 61 TVSRAGRTTAPAATLYEIVRKLPDGAKVELDHAGGDAP-LALRAGRFATSLMVLPVEDFP 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 S E + + F++ ++L+ LV+RT FA++TEE RYYLNGI+ H E D + L AVATD Sbjct: 120 SMTEGKLPHGFQIPPALLRELVDRTKFAISTEETRYYLNGIYLHATEVDGQKVLRAVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA E + MP +IVPRK V EI ++ +++V LS+++I S+ + Sbjct: 180 GHRLARVEEPLPEGAEGMPGVIVPRKTVNEIRKLADETGDAIEVKLSDTKISFAFGSVRL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP Y+ VIP NDK + V+ AV RV+ +SS R + VKLSL D L + Sbjct: 240 TSKLIDGTFPEYERVIPRGNDKIMTVDKKAFADAVSRVAAISSERSRPVKLSLKQDSLTL 299 Query: 298 TVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 T +PD G+A E ++ V Y P++I F +YL +I D I ++V FR + Sbjct: 300 TASSPDQGQAEEELDNGAVSYGSGPIEIGFQARYLADITDQI------AEKVEFRFADGS 353 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + K A YVLMPMR+ Sbjct: 354 APTVVVDA---------AKPEALYVLMPMRV 375 >gi|163738135|ref|ZP_02145551.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107] gi|161388751|gb|EDQ13104.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107] Length = 373 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 234/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A +++ +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ E L VATD Sbjct: 120 MASSEYHSNFSANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + ++ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A YV+MPMR+ Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373 >gi|167644134|ref|YP_001681797.1| DNA polymerase III subunit beta [Caulobacter sp. K31] gi|167346564|gb|ABZ69299.1| DNA polymerase III, beta subunit [Caulobacter sp. K31] Length = 372 Score = 359 bits (923), Expect = 3e-97, Method: Composition-based stats. Identities = 134/387 (34%), Positives = 213/387 (55%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER+ +L+ LGH ++ER+NTIP+ ++LL A+ L A+ ++EI A Sbjct: 1 MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSADRDTLSFSATDLDMEIIDEGLAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D+ G IT AH LY+IVRKL DG+ +S + + I G S F L P +FP Sbjct: 61 IDIPGQITAPAHTLYEIVRKLPDGSDVSLSFSGDD-PRLVIQAGRSRFNLPVLPAGDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + + ++ L L+++T FA++TEE RYYLNG++ H + ++KL AVATDG Sbjct: 120 MSSDGLSGRISVDTNELIRLIDKTRFAISTEETRYYLNGLYLHTVNDGGEVKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE+ A +P IIVPRK + E R++ S V + +S ++ +++ Sbjct: 180 HRLALAEMAAPEGAAGLPGIIVPRKTIQEARRLMESAGEQVDLQISAQKVRFEFGRAALT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP N K L ++ +AVDRV+ +S+ + ++VKL++ ++ +T Sbjct: 240 SKVIDGAFPDYLRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + V Y+ +I FN +YLL++ I FR S Sbjct: 300 VRNMEAGQAVEEVEVDYDGEAFEIGFNARYLLDVCGQIGGPI-----AEFRFADPASPTL 354 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + YVLMP+R+ Sbjct: 355 VVDPTDPGVK---------YVLMPLRV 372 >gi|163802134|ref|ZP_02196029.1| DNA polymerase III subunit beta [Vibrio sp. AND4] gi|159173939|gb|EDP58749.1| DNA polymerase III subunit beta [Vibrio sp. AND4] Length = 366 Score = 359 bits (921), Expect = 5e-97, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSSRSRFSLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L S L++LVE+T F+MA +++RYYLNG+ F I+ L+ +VATDGH Sbjct: 118 NIEDWQSEVEVSLTQSDLRSLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AV++ + A A+ IIVPRK + E+++++ + + V + + S + + + + Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGIQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P S +K L C LRQA R +I+S+ + + V+++L+ ++ +T Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V + ++I FN Y+L++++ + D+ V + +N+S I Sbjct: 295 NNPEQEEAEEILDVTFEGDAIEIGFNVSYVLDVLNTLRCDK-----VRVSMSDANASALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS A YV+MP+R+ Sbjct: 350 ENADDDS---------AMYVVMPIRL 366 >gi|68249577|ref|YP_248689.1| DNA polymerase III subunit beta [Haemophilus influenzae 86-028NP] gi|68057776|gb|AAX88029.1| DNA polymerase III, beta chain [Haemophilus influenzae 86-028NP] Length = 366 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKTVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|259417199|ref|ZP_05741118.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B] gi|259346105|gb|EEW57919.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B] Length = 373 Score = 359 bits (921), Expect = 6e-97, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLNADAATG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 EY +F ++VL+ L +++ FA++TEE RYYLNG++ H+ L VATD Sbjct: 120 MATSEYHSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y++ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A YV+MPMR+ Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373 >gi|170724372|ref|YP_001758398.1| DNA polymerase III subunit beta [Shewanella woodyi ATCC 51908] gi|169809719|gb|ACA84303.1| DNA polymerase III, beta subunit [Shewanella woodyi ATCC 51908] Length = 366 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +L+ L +ER++ +P+ ++L++ + L++ + E+E+ G + Sbjct: 1 MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A DIV+ L D ++ ++ + + G S F L + P E+P Sbjct: 61 GEVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + LK+L++ T F+MA +++RYYLNG+ L+ A+ATDGH Sbjct: 118 NVEAFQAEIEFTINQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ I + + +IVPRK V E+ R+ ++ + +++ ++ I S + Sbjct: 176 RLALSHRQIQDTLPE-KQVIVPRKGVVELQRLFEGEELDITIAIGDNAIRATTASAVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + + +L+QA+ R SI+S+ + + V++ L + + +T Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVIASRNHLKQALLRASILSNEKFRGVRVQLEENLIKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y P++I FN YLL++++N+ S D+V L NSS I Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ YV+MPMR+ Sbjct: 350 ENHIEE---------DSMYVVMPMRL 366 >gi|301154704|emb|CBW14167.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae T3T1] Length = 366 Score = 358 bits (920), Expect = 7e-97, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D +I+ E + + G S F L + P E+P Sbjct: 61 SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEED---RAIVESGRSKFNLTTLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +++ Q + S+I+PRK V E+ R+L S D ++ + + + +++ + + Sbjct: 176 RLAVCTIELD-QDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + N L+QA R SI+S+ R+++V+L+LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + +V RL ++SS I Sbjct: 295 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKCQ-----QVRIRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 350 ENSED---------ASAEYVIMPMRL 366 >gi|325577774|ref|ZP_08148049.1| DNA-directed DNA polymerase III beta subunit [Haemophilus parainfluenzae ATCC 33392] gi|325160519|gb|EGC72645.1| DNA-directed DNA polymerase III beta subunit [Haemophilus parainfluenzae ATCC 33392] Length = 367 Score = 358 bits (919), Expect = 8e-97, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 2 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 61 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D +I+ E + + G S F L + P E+P Sbjct: 62 SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEED---RAIVESGRSKFNLTTLPAEEYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 119 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV +++ Q + S+I+PRK V E+ R+L S D ++ + + + +++ + + Sbjct: 177 RLAVCTIELD-QDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + + N L+QA R SI+S+ R+++V+L+LS ++L +T Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + +V RL ++SS I Sbjct: 296 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKCQ-----QVRIRLTDASSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 351 ENSED---------ASAEYVIMPMRL 367 >gi|121998016|ref|YP_001002803.1| DNA polymerase III subunit beta [Halorhodospira halophila SL1] gi|121589421|gb|ABM62001.1| DNA polymerase III, beta subunit [Halorhodospira halophila SL1] Length = 366 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 207/385 (53%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V+R +L L ++ER+ T+PV ++ ++A L++ A+ E+E+ + A+ Sbjct: 1 MRFEVQREPLLAALQSIVGVVERRQTLPVLGNIRVEARSQQLQLTATDLEVELVAYLEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A DI R L +GA IS + + S F L + P EFP Sbjct: 61 TKDEGVITLPARKWLDICRNLPEGASISIEANQD---RATLRAASSRFSLATLPADEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + E+ L+ L+ERTHF+MA ++RYYLNG+ + + AVATDGHR Sbjct: 118 VESIGDTEAVEIPRGELRRLIERTHFSMAQHDVRYYLNGLLLELTGSGAR--AVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AE D Q+A+ +IVPRK V E+LR+L D + + + + ++S+ ++ + Sbjct: 176 LALAESDSPVQVAQPRQVIVPRKGVQELLRLLDDADEPATLEFGTNHVRVTLQSVRLTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y VIP DK + ++ LRQA+ RV+I+S+ + + ++ ++ D L + Sbjct: 236 LIDGVFPDYNRVIPQDGDKHVLIDRQYLRQALTRVAILSNEKYRGIRFAVEGDTLRIGSH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + Y +++ FN YLL+ + + + + V L ++SS IR Sbjct: 296 NPEQEEAEEELGIEYGGEAVELGFNANYLLDALGALDT-----ERVQVTLTDASSSGLIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + D NA YV+MPMR+ Sbjct: 351 AEGSD---------NARYVVMPMRL 366 >gi|262189752|ref|ZP_06048107.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93] gi|262034366|gb|EEY52751.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93] Length = 353 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 111/359 (30%), Positives = 200/359 (55%), Gaps = 12/359 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQK-QIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V+++L+ +++ +T Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V + P++I FN Y+L++++ + D V + + Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDAQRQCL 348 >gi|99079843|ref|YP_611997.1| DNA polymerase III subunit beta [Ruegeria sp. TM1040] gi|99036123|gb|ABF62735.1| DNA polymerase III, beta subunit [Ruegeria sp. TM1040] Length = 373 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 146/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER+ +L+ + A ++ER+NTIP+ +VL++A + +A+ +IE+ PA Sbjct: 1 MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLDADAASG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H+ L VATD Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + D+ MP +IVPRK VGE+ ++L D + VS+SE+++ ++++ Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ + +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y++ ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A YV+MPMR+ Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373 >gi|148980123|ref|ZP_01815903.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3] gi|145961424|gb|EDK26730.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3] Length = 356 Score = 358 bits (919), Expect = 9e-97, Method: Composition-based stats. Identities = 111/376 (29%), Positives = 206/376 (54%), Gaps = 21/376 (5%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITV 69 ++ L + + T+P+ ++L++ D +L + A+ E+E+ + D GSITV Sbjct: 1 MKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEAGSITV 60 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 + DI R L D + I+ + G V + G S F L + P ++FP+ ++ Sbjct: 61 PSRKFLDICRGLPDSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIEDWSSEVE 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 + + L+ L+E+T F+MA +++RYYLNG+ F I E L +VATDGHR+AV++ + Sbjct: 118 VSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGHRMAVSQAQLG 175 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 A A+ IIVPRK V E++++L + + V + + S + + + + +L+DG FP+Y Sbjct: 176 ADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPDY 234 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309 + V+P + K L C LR A R +I+S+ + + V+++L+ ++ +T +NP+ +A E Sbjct: 235 RRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADSEMRITANNPEQEEAEE 294 Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 ++V + ++I FN Y+L++++ + ++V + +N+S I DS Sbjct: 295 MLDVTFEGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENAQDDS--- 346 Query: 370 KDNKVNAFYVLMPMRI 385 A YV+MP+R+ Sbjct: 347 ------AMYVVMPIRL 356 >gi|113460283|ref|YP_718342.1| DNA polymerase III subunit beta [Haemophilus somnus 129PT] gi|170718298|ref|YP_001783357.1| DNA polymerase III subunit beta [Haemophilus somnus 2336] gi|112822326|gb|ABI24415.1| DNA polymerase III, beta subunit [Haemophilus somnus 129PT] gi|168826427|gb|ACA31798.1| DNA polymerase III, beta subunit [Haemophilus somnus 2336] Length = 366 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 117/386 (30%), Positives = 203/386 (52%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ V R +L+ L C ++ + P+ +VLLQ +L I + E+E++ Sbjct: 1 MQFIVSREHLLKPLQQVCGVLSSRPNFPILNNVLLQIEGNVLRITGTDLEVELSTQAQLI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS T+ A DI R D A+I+ E E + G S F L + P E+P Sbjct: 61 QASQDGSYTIPAKKFLDICRSFPDEAEITVIFEEE---RALVRSGRSKFNLTALPADEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLADWQSEVDFYLPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q ++I+PRK + E++R+L + + + V + + + +++ S+ + Sbjct: 176 RLAVCTIPLE-QDLHTHAVILPRKGILELMRLLENSEHAAHVQIGTNNLRIDLGSIIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + N L+QA R++I+SS +++ V+L L+S++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATHIMEGNWELLKQAFARMAILSSDKVKTVRLQLTSNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V YN M++ FN Y+L++++ + +V ++SS + Sbjct: 295 TNPEQEVAEEILDVIYNGADMEVGFNVSYILDVLNALKCQ-----QVRLCFTDASSSCLL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +S YV+MPMR+ Sbjct: 350 EDADDESAE---------YVVMPMRL 366 >gi|119503574|ref|ZP_01625657.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2080] gi|119460636|gb|EAW41728.1| DNA polymerase III subunit beta [marine gamma proteobacterium HTCC2080] Length = 365 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 122/386 (31%), Positives = 205/386 (53%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +++ L ++ER+ T+P+ +VLL L + + E+E+ G + Sbjct: 1 MKFSISREALIKPLNLVAGVVERRQTLPILSNVLLNLEGTQLSLTGTDLEVELIGRVEVE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G ITV A L DI + L D +QI F + + + G F L + P +EFP Sbjct: 61 AGGVDGDITVPARKLVDICKSLPDSSQIEFSVD---SGKAMVKAGRGRFTLSTLPATEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E + E+A SV+K L++RT FAMA +++RYYLNG+ + +L VATDGH Sbjct: 118 SVDESAGDQTLEVAQSVVKRLIDRTAFAMAQQDVRYYLNGMLLELKAG--RLRMVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + A +II+PRK V E+ R+L D S+++ + + I + + + Sbjct: 176 RLALCTAN-EAVSTGDAAIIIPRKGVLELSRLL-DTDESIRLVIGSNHIRAANQQFTFTS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP Y+ V+P S DK + LRQA R +I+S+ + + V+L LS+D L +T Sbjct: 234 KLVDGKFPEYERVLPKSADKTVIGQRLELRQAFTRTAILSNEKYRGVRLKLSADTLDITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y +++ FN YLL+++ + D++ Sbjct: 294 NNPEQEQAEEVVAVEYQGEELEVGFNVSYLLDVLSVLDGDQIRLSL-------------- 339 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ ++ YV+MPMR+ Sbjct: 340 SDSASSALLEEADEGDSLYVVMPMRL 365 >gi|86139416|ref|ZP_01057985.1| DNA polymerase III subunit beta [Roseobacter sp. MED193] gi|85823919|gb|EAQ44125.1| DNA polymerase III subunit beta [Roseobacter sp. MED193] Length = 373 Score = 358 bits (919), Expect = 1e-96, Method: Composition-based stats. Identities = 145/388 (37%), Positives = 232/388 (59%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ER +L+ + A ++ER+NTIP+ +VL++A + + +A+ +IE+ PA Sbjct: 1 MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDVAQFRATDLDIEVVDKAPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TV+A L++IVRKL DGA ++ + G + + G SNF L + P +FP Sbjct: 61 VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLTVEAGRSNFSLATLPREDFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177 EY +F +++L+ L +++ FA++TEE RYYLNG++ H++ E L VATD Sbjct: 120 MASSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKVLRCVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + MP +IVPRK VGE+ ++L + + VS+SE+++ ++++ Sbjct: 180 GHRLARIDASLPVGAEDMPGVIVPRKTVGEMRKLLDDDEMDIAVSVSETKVRFATPNITL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDG FP+Y VIP N + L V+ +AVDRV+ +SS R +AVKL L D+L + Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDADEFARAVDRVATVSSERSRAVKLQLEEDRLIL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+ PD G A E + V Y + ++I FN KYLLEI +++V + VF +SS Sbjct: 300 SVNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A YV+MPMR+ Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373 >gi|254435596|ref|ZP_05049103.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27] gi|207088707|gb|EDZ65979.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27] Length = 377 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R +I+ L C ++ER++T+P+ +VLL D L + A+ EIEI A+ Sbjct: 11 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 70 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G +TVSA +I R L G+ + + + I G S F L + P +FPS Sbjct: 71 SSEEGKVTVSARKFLEICRALPSGSALEAQYKE---GQFYIHSGRSRFTLSTLPAEDFPS 127 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V EL + LK L+ RT F MA +++RYYLNG+ + EE + AVATDGHR Sbjct: 128 IDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEES--IHAVATDGHR 185 Query: 181 LAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+A + Q I+PRKA+ E++R+L V++ +++ + LS S Sbjct: 186 LALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFST 245 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+++ + + V L LS KL V Sbjct: 246 KLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIV 305 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G A E +++ Y ++I FN YL+++++ I + EV +++SS I Sbjct: 306 TNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTK-----EVRLTFTNASSSCLI 360 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 361 TPIDA---------SDSKYVVMPMRL 377 Score = 37.1 bits (85), Expect = 4.6, Method: Composition-based stats. Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 11/182 (6%) Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 KE++ + F + + + + L+ + + + L L +ATD Sbjct: 4 LKEKKQLMRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSL--MATD--L 59 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-V 239 + ++ + V + EI R L S S+++ E + +++ + Sbjct: 60 EIEIRTALKVLSSEEGKVTVSARKFLEICRALPSG-SALEAQYKEGQFYIHSGRSRFTLS 118 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L +FP+ ++ EL + L+Q + R + Q V+ L+ L +T Sbjct: 119 TLPAEDFPSIDSI---DAVAELELTQAELKQLLHRTVFCMA--HQDVRYYLNGLLLELTE 173 Query: 300 DN 301 ++ Sbjct: 174 ES 175 >gi|152977690|ref|YP_001343319.1| DNA polymerase III subunit beta [Actinobacillus succinogenes 130Z] gi|150839413|gb|ABR73384.1| DNA polymerase III, beta subunit [Actinobacillus succinogenes 130Z] Length = 366 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 112/386 (29%), Positives = 205/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R ++L+ L C ++ + +PV +VLLQ L I + E+E++ + Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNVPVLNNVLLQIEGDRLTITGTDLEVELSTQAQLN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ T+ A DI R L + A I+ E + + + F L +FP E+P+ Sbjct: 61 SHGEGTFTIPAKKFLDICRSLPEDAVITVDFEQD---RAIVRSSRTKFNLATFPAEEYPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F ++ + ++ L+E T F+MA + RY+LNG+ F L+ VATDGHR Sbjct: 118 LTDWQSEVDFTVSQATMRRLIEATQFSMANNDARYFLNGMKFETEGNLLR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 LAV +++ Q + S+I+PRK V E+ R+L + + +V + + + + S+ + Sbjct: 176 LAVCTIELE-QDLQNHSVILPRKGVLELARLLDATSEQPARVQIGTNNFRVELGSVVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + ++ L + NL+Q+ R SI+SS +++ V+L L+ ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNANRILESDWENLKQSFVRASILSSEKVRTVRLELNQNQLTITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ + E ++V Y P++I FN Y+L++++ + V R ++SS I Sbjct: 295 KNPEQEEVEEILDVSYQSEPIEIGFNVSYVLDVLNALKCQ-----RVRVRFTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ YV+MPM++ Sbjct: 350 EDCEDNTAE---------YVIMPMKL 366 >gi|145630088|ref|ZP_01785870.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021] gi|144984369|gb|EDJ91792.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021] Length = 366 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R +L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISREHLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|145632378|ref|ZP_01788113.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655] gi|145637298|ref|ZP_01792959.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH] gi|144987285|gb|EDJ93815.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655] gi|145269550|gb|EDK09492.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH] Length = 366 Score = 358 bits (918), Expect = 1e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|260912770|ref|ZP_05919256.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis ATCC 43325] gi|260633148|gb|EEX51313.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis ATCC 43325] Length = 366 Score = 357 bits (917), Expect = 1e-96, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59 M+ V R ++L+ L C ++ + IPV +VLLQ N L I + E+E++ + Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQINGDCLVITGTDLEVELSTQSALL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S DV G+ T+ A DI R L + A+IS E + + G S F L + P E+P Sbjct: 61 STDVKGNFTIPAKKFLDICRSLPENAEISVSFEED---RAIVKSGRSKFNLSTLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F + S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTIEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E++R+L + D ++ + + + + + ++ + Sbjct: 176 RLAVCTIALE-QDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIELGNIIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + L + L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEADWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYIGEEMEVGFNVSYILDVLNALKCQ-----RVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +A YV+MPMR+ Sbjct: 350 EDCED---------ASAEYVIMPMRL 366 >gi|77163563|ref|YP_342088.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707] gi|76881877|gb|ABA56558.1| DNA polymerase III, beta subunit [Nitrosococcus oceani ATCC 19707] Length = 367 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R +I+ L C ++ER++T+P+ +VLL D L + A+ EIEI A+ Sbjct: 1 MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G +TVSA +I R L G+ + + + I G S F L + P +FPS Sbjct: 61 SSEEGKVTVSARKFLEICRALPSGSALEAQYKE---GQFYIHSGRSRFTLSTLPAEDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V EL + LK L+ RT F MA +++RYYLNG+ + EE + AVATDGHR Sbjct: 118 IDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEES--IHAVATDGHR 175 Query: 181 LAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+A + Q I+PRKA+ E++R+L V++ +++ + LS S Sbjct: 176 LALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFST 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+++ + + V L LS KL V Sbjct: 236 KLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIV 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G A E +++ Y ++I FN YL+++++ I + EV +++SS I Sbjct: 296 TNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTK-----EVRLTFTNASSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ YV+MPMR+ Sbjct: 351 TPIDA---------SDSKYVVMPMRL 367 >gi|15603025|ref|NP_246097.1| DNA polymerase III subunit beta [Pasteurella multocida subsp. multocida str. Pm70] gi|12721508|gb|AAK03244.1| DnaN [Pasteurella multocida subsp. multocida str. Pm70] Length = 366 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ V R ++L+ L C ++ + IPV +VLLQ L I + E+E++ Sbjct: 1 MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQIRGERLVITGTDLEVELSTETALL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV GS T+ A DI R L + A+IS E + + G S F L + P E+P Sbjct: 61 RTDVQGSFTIPAKKFLDICRSLPEEAEISVSFEED---RAIVKSGRSKFNLSTLPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L S L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFTLEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E++R+L + D ++ + + + +++ ++ + Sbjct: 176 RLAVCTIALE-QDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIDLGNIIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + + L L+QA R +I+S+ R ++V+L LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEAEWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ A E ++V Y M++ FN Y+L++++ + V RL ++SS I Sbjct: 295 TNPEQEVAEEIIDVSYVGEEMEVGFNVSYILDVLNALKCQ-----RVRMRLTDASSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +A YV+MPMR+ Sbjct: 350 EDCDD---------ASAEYVIMPMRL 366 >gi|304309654|ref|YP_003809252.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma proteobacterium HdN1] gi|301795387|emb|CBL43585.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma proteobacterium HdN1] Length = 367 Score = 357 bits (917), Expect = 2e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 203/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R IL+ L ++ER+ T P+ ++LL + L + + E+E+ I Sbjct: 1 MKFKVIREGILKPLQQLAGLVERRQTKPILANILLVLDGNALTLTGTDTEVELRARIQLG 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+ A L DI + L +GA++ +++ + + G S F L + P +FP Sbjct: 61 EEYPFGRATLPAKKLLDICKSLPEGAELLIEADDQ---KALLRSGRSKFSLVALPPDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++ ++ F + L+ L+E+T FAMA +++R+YLNG+ ++E +L+ AVATDGH Sbjct: 118 DLEDGQFEVQFSIQQRYLRELIEKTGFAMAQQDVRFYLNGMLLEVSENNLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + DI+ Q A + +VPRK + EI ++ S D + +SLS + + L + Sbjct: 176 RLALGDRDILWQGAGIRQAVVPRKGILEIPKLFGSDDGELLISLSGNHLRAETADLRFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+D ++P Y V+P ++ + + LRQ + RV I+S+ + + V+L+ L Sbjct: 236 KLLDAKYPEYGRVLPKPGERYIVADRDALRQCLLRVGILSNEKFRGVRLTFQCGVLVARA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NP+ +A ES+ V YN +I FN YLL+++ + S + V L +N++ I Sbjct: 296 SNPEQEEAEESVVVDYNGADTEIAFNIGYLLDVLGVVKS-----ESVSISLADANNTALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D YV+MPMRI Sbjct: 351 RETVDD---------KTLYVVMPMRI 367 >gi|145634168|ref|ZP_01789879.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA] gi|145268612|gb|EDK08605.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA] Length = 366 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LS ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSFKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|229846050|ref|ZP_04466162.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1] gi|229811054|gb|EEP46771.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1] Length = 366 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|301169718|emb|CBW29319.1| DNA polymerase III, beta subunit [Haemophilus influenzae 10810] Length = 366 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|256821230|ref|YP_003145193.1| DNA polymerase III subunit beta [Kangiella koreensis DSM 16069] gi|256794769|gb|ACV25425.1| DNA polymerase III, beta subunit [Kangiella koreensis DSM 16069] Length = 367 Score = 357 bits (916), Expect = 2e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 203/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R +L L +E++ T+PV +VL+ +D L + A+ E+E+ + Sbjct: 1 MRFTISRDQLLAPLQLVSGAVEKRQTLPVLSNVLMVVDDSKLSLTATDLEVELKAQVDLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A L DIVR L DG + K + T + + S F L + +EFP Sbjct: 61 GEFEPGEITVPARKLLDIVRSLGDGENV---KIEQSETRLKVITPSSRFSLSTMSANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + S EL VLK+L+E+T FAMA +++RYYLNG+ F + + KL VATDGH Sbjct: 118 NLDETVSLASLELTQDVLKSLIEKTQFAMAQQDVRYYLNGMLFEFDND--KLTTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ S I+PRK V E+ R+L D ++ ++L + I + S + Sbjct: 176 RLALSRAKASIDADDKISAIIPRKGVTELARLLEHSDDNITLNLGSNHIKVIGPDYSFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP Y+ V+P + DK + + ++++ R SI+ + + + V+ L+++++ + Sbjct: 236 KLVDGRFPEYEKVLPRNGDKIVIADRELFKESLSRASILCNEKFRGVRFMLTNEQVRLHA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A V Y ++I FN Y++++++ I + +V +NSS I Sbjct: 296 NNPEQEEAEVEFGVDYQGSDLEIGFNVSYMIDVMNTIKT-----PQVKLTFIDANSSTLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + YV+MPMR+ Sbjct: 351 EEVDGGE---------SVYVVMPMRL 367 >gi|315497053|ref|YP_004085857.1| DNA polymerase iii, beta subunit [Asticcacaulis excentricus CB 48] gi|315415065|gb|ADU11706.1| DNA polymerase III, beta subunit [Asticcacaulis excentricus CB 48] Length = 373 Score = 356 bits (915), Expect = 2e-96, Method: Composition-based stats. Identities = 133/387 (34%), Positives = 219/387 (56%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +ER +L+ LGH ++ER+NTIP+ +VLL A + A+ ++EI + A Sbjct: 1 MQLIIERGALLKALGHVQNVVERRNTIPILSNVLLSAEGSQVSFSATDLDMEIVDSAEAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G IT AH LY+IVRKL DGA + + + + G S F L P +FP Sbjct: 61 VAVPGQITAPAHTLYEIVRKLPDGADVELRYQAGDDPRLTVQAGRSRFALPVLPAGDFPV 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178 + ++ L LK L+++T FA++TEE RYYLNG+F H + L AVATDG Sbjct: 121 MSGDHDGTTYALLKEDLKRLIDKTRFAVSTEETRYYLNGLFLHTLTEDGSGYLRAVATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+AE+ +I+PRK + + R+L V++++S ++I N + +++ Sbjct: 181 HRLALAEMPAPDGSMGSAGVIIPRKTIDQARRLLDDGTGYVELTVSPAKIRFNFGTAALT 240 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y VIP +NDK +R++ L +AVDRVS +S+ + ++VK+++ +L +T Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKLMRIDTGILSRAVDRVSTISAEKSRSVKMAIEPGRLTLT 300 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V N + G+A+E + Y+ ++I FN +Y+L+++ I+ ++V RL+ + S Sbjct: 301 VRNIEAGQAVEEAEIDYDSDSLEIGFNARYILDVMGQIAG-----EQVELRLNDAASPTL 355 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + YVLMP+R+ Sbjct: 356 VLDTADQGVQ---------YVLMPLRV 373 >gi|217968467|ref|YP_002353701.1| DNA polymerase III subunit beta [Thauera sp. MZ1T] gi|217505794|gb|ACK52805.1| DNA polymerase III, beta subunit [Thauera sp. MZ1T] Length = 369 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 117/385 (30%), Positives = 200/385 (51%), Gaps = 21/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +T R +L L I+E+++T+P+ +VL++ + L + A+ EI+I + Sbjct: 4 LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHADQLTMLATDIEIQIRTTTGGHIG 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 SITV A L DI+R L D A+IS +++ + + G S F LQ+ P +++P Sbjct: 64 GEDASITVGARKLQDILRALPDSAEISLTLDDK---RLTVKAGRSRFQLQTLPAADYPRL 120 Query: 122 -KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + K + + +AMA ++IRYYLNG+ + +L++ VATDGHR Sbjct: 121 NPPTDAAAHLSIGQRTFKRQLAQVAYAMAQQDIRYYLNGLLLIADGGELRM--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D+ A IA I+PRK V E+ R L+ D +++ L+ ++ + + + Sbjct: 179 LAYAASDLEAPIATRTEAILPRKTVLELARQLADSDDPLEILLAGNQAVFRFGPIELVTK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ VIP ++ K + L A+ R +I+++ + + V++ L L + Sbjct: 239 LIDGKFPDYERVIPTAHPKLIHFARQPLLSALQRAAILTNEKFRGVRMVLEDGVLRIAST 298 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ + + Y +DI FN YLL++++N+SS+ V R + NSS I Sbjct: 299 NAEQEEAMDELEIDYQGDKLDIGFNVTYLLDVLNNLSSETVDW-----RFNDGNSSALIT 353 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D YV+MPMRI Sbjct: 354 LPGND---------KFKYVVMPMRI 369 >gi|296285052|ref|ZP_06863050.1| DNA polymerase III subunit beta [Citromicrobium bathyomarinum JL354] Length = 375 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 229/392 (58%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEI-TGAIP 58 MK T+ER+ +L L H ++ER+NTIP+ +VL+ A+ G +++ A+ ++++ Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDADAGGGVKVMATDLDLQVVETMTA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+ITVSAHLL+DI RKL DG+Q+S + + + G S F L + P +F Sbjct: 61 ASVESAGAITVSAHLLFDIARKLPDGSQVSLETAD---NRMVVKAGRSRFQLPTLPRDDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATD 177 P E E SFEL + L +++RT FA++TEE RYYLNGIF H+++E L A ATD Sbjct: 118 PVIVEGELPTSFELPARELAEMIDRTRFAISTEETRYYLNGIFLHVSDEARPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234 GHRLA +D MP +IVPRKAVGE+ ++L DS+V++ LS S+I + Sbjct: 178 GHRLARYTLDRPEGAEGMPDVIVPRKAVGELRKLLEEALDSNVQIDLSASKIRFALGGEG 237 Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ +LIDG FP+Y VIP NDK LR++ Q VDRV+ +++ + +AVK+ L D Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLRLDPKAFFQGVDRVATIATEKTRAVKMGLDED 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 K+ ++V +PD G A E + Y +I FN YL +I+ I S D V L + Sbjct: 298 KVTLSVTSPDNGTAAEEIAAEYKAEGFEIGFNANYLKDILGQIDS-----DTVELHLADA 352 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR +D A YVLMPMR+ Sbjct: 353 GAPTLIR---------RDENSPALYVLMPMRV 375 >gi|220933195|ref|YP_002512094.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7] gi|219994505|gb|ACL71107.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7] Length = 366 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 202/385 (52%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R D+L+ L +ER+ T+P+ +VL++A++ L + + E+E+ Sbjct: 1 MRFSIQREDLLKPLQQVIGAVERRQTMPILANVLIKADEDRLSVTGTDLEVELVAEASEV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TV A L DI R L D A + E G V I+ G + F L + P ++FP+ Sbjct: 61 SASPGEATVPARKLLDICRALPDEASLEIQAE---GDRVLITSGRARFTLSALPAADFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L L++L+ RT FAMA +++RYYLNG+ + + ++ VATDGHR Sbjct: 118 LDEISSSKELTLTERELRHLILRTSFAMANQDVRYYLNGLMLEVGQNVIR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E++ A +I+PRK V E+LR+L D V++ + + I + L + + Sbjct: 176 LALCELNTTVDTASSQQVIIPRKGVQELLRLLEDSDEPVRLQIGANHIRATLPRLRFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y VIP D+ ++V LR+A+ R SI+S+ + + ++L L L + Sbjct: 236 LIDGRFPDYDRVIPKDGDQVMKVEREALRKALARASILSNEKYRGIRLVLGDGLLRIQAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A + + Y M+I FN YLL++++ + D + +NSSV +R Sbjct: 296 NPEQEEAEDEIEAQYTGTAMEIGFNVTYLLDVLNTVEGDVIEA-----TFKDANSSVLMR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 351 DP---------GATDALYVVMPMRL 366 >gi|229843948|ref|ZP_04464089.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1] gi|229812942|gb|EEP48630.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1] Length = 366 Score = 356 bits (915), Expect = 3e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S YV+MPMR+ Sbjct: 350 ENCEDNSSE---------YVIMPMRL 366 >gi|148828163|ref|YP_001292916.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG] gi|148719405|gb|ABR00533.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG] Length = 366 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|145640666|ref|ZP_01796249.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021] gi|145274592|gb|EDK14455.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.4-21] Length = 366 Score = 356 bits (914), Expect = 3e-96, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366 >gi|319897496|ref|YP_004135693.1| DNA polymerase iii, beta subunit [Haemophilus influenzae F3031] gi|317433002|emb|CBY81373.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3031] Length = 366 Score = 356 bits (913), Expect = 4e-96, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDESEITVIFEQD---RALVQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + Q + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISL-GQELQNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|90408443|ref|ZP_01216603.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3] gi|90310427|gb|EAS38552.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3] Length = 368 Score = 356 bits (913), Expect = 5e-96, Method: Composition-based stats. Identities = 123/387 (31%), Positives = 216/387 (55%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ ++ R L L + + +P+ ++L+Q DG+L + + E+E+ I Sbjct: 1 MQFSISREAFLRPLQLVAGSVAGGRPALPIMANILIQIKDGILSLTGTDLEVELITQIHL 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 G ITV A L +I R L D +I F +++ V + G S + L S P S+F Sbjct: 61 ESPSEEGEITVPARKLLNICRGLSDPCEIKFQVKDD---RVTVRSGRSRYLLSSLPASDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + F +A K L+E T FAMA++++RYYLNG++F + + L+ +VATDG Sbjct: 118 PNIESWKSLAEFNVAQKEFKKLIEFTQFAMASQDVRYYLNGMYFEASGDSLR--SVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + I + S+IVPRK V E++++L ++ +V + + ++ + I + + Sbjct: 176 HRLASCAIKLSTPIEEQ-SLIVPRKGVVELVKLLDNEQENVTIQIGKNNLRAIIGNFIFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ VIP + DKEL + +L+QA R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLVDGRFPDYRRVIPRNGDKELIASRESLKQAFTRAAILSNEKFRGVRLTLSKNLLQIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E +++ Y ++I FN Y+L++++ + S++ + SS S Sbjct: 295 ANNPEREEAEEYIDIDYQASDLEIGFNVSYVLDVLNTLKSEK-----IKITFSSSAHSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D D +A YVLMPMR+ Sbjct: 350 IESIDADD--------DALYVLMPMRL 368 >gi|85374293|ref|YP_458355.1| DNA polymerase III subunit beta [Erythrobacter litoralis HTCC2594] gi|84787376|gb|ABC63558.1| DNA polymerase III beta subunit [Erythrobacter litoralis HTCC2594] Length = 375 Score = 355 bits (912), Expect = 5e-96, Method: Composition-based stats. Identities = 156/392 (39%), Positives = 231/392 (58%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59 MK T+ER+ +L L H ++ER+NTIP+ ++L++A DG +++ A+ ++++ + A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNILIEAGDGSAVKVMATDLDLQVVETMNA 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 SV+ GS TVSAHLL+DI RKL DG+Q+S + + I G S F L + P+ +F Sbjct: 61 ASVESSGSTTVSAHLLFDIARKLPDGSQVSLEVAD---NRMTIKAGRSRFQLPTLPKDDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATD 177 P E + SFE+ + L L++RT FA++TEE RYYLNGIF H+++ED L A ATD Sbjct: 118 PVIVEGDLPTSFEIPAKTLAELIDRTRFAISTEETRYYLNGIFLHVSDEDTPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234 GHRLA + MP +IVPRKAVGE+ ++L + D +V V LS S+I + Sbjct: 178 GHRLARFTLARPDGADGMPDVIVPRKAVGELRKLLEERMDGNVVVDLSASKIRFTLGGEG 237 Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ +LIDG FP+Y VIP NDK L+V+ + + VDRV+ +++ + +AVK+ L +D Sbjct: 238 GTVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKSFFEGVDRVATIATEKTRAVKMGLDAD 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 K+ ++V +PD G A E + Y +I FN YL +I+ I S D V L + Sbjct: 298 KVTLSVTSPDNGTASEELAAEYKSEGFEIGFNANYLKDILSQIDS-----DMVELHLADA 352 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR KD A YVLMPMR+ Sbjct: 353 GAPTLIR---------KDENSPALYVLMPMRV 375 >gi|303250481|ref|ZP_07336678.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307251523|ref|ZP_07533430.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307256023|ref|ZP_07537811.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] gi|302650469|gb|EFL80628.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860987|gb|EFM92993.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306865445|gb|EFM97340.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 10 str. D13039] Length = 367 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 211/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + A+ E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTATDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + + S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367 >gi|16272930|ref|NP_439155.1| DNA polymerase III subunit beta [Haemophilus influenzae Rd KW20] gi|260580083|ref|ZP_05847913.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW] gi|1169393|sp|P43744|DPO3B_HAEIN RecName: Full=DNA polymerase III subunit beta gi|1574022|gb|AAC22654.1| DNA polymerase III, beta subunit (dnaN) [Haemophilus influenzae Rd KW20] gi|260093367|gb|EEW77300.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW] Length = 366 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|53729133|ref|ZP_00134099.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|126207490|ref|YP_001052715.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae L20] gi|165975459|ref|YP_001651052.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|190149271|ref|YP_001967796.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|307244803|ref|ZP_07526902.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|307249201|ref|ZP_07531198.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|307262582|ref|ZP_07544213.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] gi|126096282|gb|ABN73110.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 5b str. L20] gi|165875560|gb|ABY68608.1| DNA polymerase III beta chain [Actinobacillus pleuropneumoniae serovar 3 str. JL03] gi|189914402|gb|ACE60654.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 7 str. AP76] gi|306854248|gb|EFM86454.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 1 str. 4074] gi|306858725|gb|EFM90784.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 4 str. M62] gi|306872080|gb|EFN03793.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 13 str. N273] Length = 367 Score = 355 bits (912), Expect = 6e-96, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + + S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367 >gi|307253757|ref|ZP_07535611.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|307258214|ref|ZP_07539957.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] gi|306863241|gb|EFM95181.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 9 str. CVJ13261] gi|306867674|gb|EFM99519.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 11 str. 56153] Length = 367 Score = 355 bits (912), Expect = 7e-96, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 209/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + + S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + ++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRASMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367 >gi|145638186|ref|ZP_01793796.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII] gi|145272515|gb|EDK12422.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII] Length = 366 Score = 355 bits (911), Expect = 7e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|148826360|ref|YP_001291113.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE] gi|148716520|gb|ABQ98730.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE] Length = 366 Score = 355 bits (911), Expect = 8e-96, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSHRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366 >gi|303251823|ref|ZP_07337994.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|307249124|ref|ZP_07531131.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] gi|302649253|gb|EFL79438.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. 4226] gi|306854412|gb|EFM86608.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 2 str. S1536] Length = 367 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 211/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + + S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA +++RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDVRYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367 >gi|332288918|ref|YP_004419770.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179] gi|330431814|gb|AEC16873.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179] Length = 366 Score = 354 bits (910), Expect = 9e-96, Method: Composition-based stats. Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R ++L+ L C ++ + ++PV ++L+Q + L + S E+E++ + Sbjct: 1 MQFIVARENLLKPLQQVCGVLNNRPSLPVLNNILVQIDGDRLTLTGSDLEVELSTFVQLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L + AQI+ EN+ V ++ S F L + P +P Sbjct: 61 SSSENGTFTIPARKFLDICRSLNEDAQITVNYEND---RVLVTAERSKFNLATLPAESYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + SVL+ ++E T F+MA ++ RY+LNG+ F E+ L VATDGH Sbjct: 118 NLTQLDVDVELNIEQSVLRRVMEATQFSMANQDARYFLNGMKFET--ENNVLRTVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + + +IIVPRK V E++R+L S + + + +S I +++ ++ + Sbjct: 176 RLAVCGIQLQQNVPD-YAIIVPRKGVIELMRLLDSNSENAYIRMGQSNIQVHLNNVIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + D+ L V+ +L+QA R +I+S+ R + V+L + +++L + Sbjct: 235 KLIDGRFPDYRRVLPKNADRILEVDWNSLKQACIRAAILSNERFRGVRLIIEANQLKILA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NPD +A E ++V Y PM++ FN Y+L++++ + V RL + SS I Sbjct: 295 QNPDQEEAEEVIDVSYQGEPMEVGFNVSYILDVLNALKCQS-----VRMRLTDATSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ NA YV+MPMR+ Sbjct: 350 EDCEQ---------SNAEYVIMPMRL 366 >gi|145628066|ref|ZP_01783867.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21] gi|144979841|gb|EDJ89500.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21] Length = 366 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQD---RALVQSGRSRFTLATQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETSDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|319775074|ref|YP_004137562.1| DNA polymerase III subunit beta [Haemophilus influenzae F3047] gi|329123015|ref|ZP_08251586.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius ATCC 11116] gi|317449665|emb|CBY85871.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3047] gi|327471946|gb|EGF17386.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius ATCC 11116] Length = 366 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|254447344|ref|ZP_05060810.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015] gi|198262687|gb|EDY86966.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015] Length = 366 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 130/385 (33%), Positives = 216/385 (56%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R +L L +ERKNT+P +VL++A G +++ A+ EIE+ Sbjct: 1 MKLHLSRESLLTPLQKVIGAVERKNTMPALGNVLIKAQGGEIQMTATDLEIELLAKSVLP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G IT+ A L DI + L DGA I+ + E +S G S F L + P ++FP Sbjct: 61 VDQEGDITLPARKLLDICKNLPDGADITLQVDAE---RATLSSGRSRFKLSTLPAADFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V F L S L+ ++++T FAMA +++RYYLNG+ ++ ++ AVATDGHR Sbjct: 118 LEAVQGVTQFTLPQSTLRKVIDKTSFAMAQQDVRYYLNGLMLELDGSTVR--AVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E D I +I+PRK V E+ R+L ++ +VSLS + I +++ +L + + Sbjct: 176 LALCETDAGLDIGDKKQVIIPRKGVQELSRLLDDEERDAEVSLSNNHIQVDLGNLRFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+YQ V+P + DK + + +L+ A+ R S++S+ + + V+L + L + + Sbjct: 236 LIDGRFPDYQRVMPANCDKVVSADKQDLKLALTRTSVLSNEKYKGVRLVADNGALTIQTN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + V Y M+I FN Y+L++++N+ ++ V L +NSS + Sbjct: 296 NPEQEEAEEQLEVQYQGENMEIGFNVNYMLDVLNNL-----TEELVTIALKDANSSCLVE 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 351 ---------EVGEQTAKYVIMPMRL 366 >gi|254363201|ref|ZP_04979250.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica PHL213] gi|153095095|gb|EDN75646.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica PHL213] Length = 367 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+IT+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T Sbjct: 1 MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI + L D + IS E + + I G S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEED---KAIIKAGRSKFSLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++S D +V++ + S I + + + + Sbjct: 176 HRLAVCTMVLNQELL-THSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS++ L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y+ M++ FN Y+L++++ + V F L S+SS Sbjct: 295 ANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKCQ-----RVRFSLVDSSSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D S YV+MPMR+ Sbjct: 350 IEDCDNSSAE---------YVIMPMRL 367 >gi|309751342|gb|ADO81326.1| DNA polymerase III beta subunit [Haemophilus influenzae R2866] Length = 366 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + N L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|309973508|gb|ADO96709.1| DNA polymerase III beta subunit [Haemophilus influenzae R2846] Length = 366 Score = 354 bits (910), Expect = 1e-95, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F+L + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V RL + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366 >gi|260581929|ref|ZP_05849725.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127] gi|260095122|gb|EEW79014.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127] Length = 366 Score = 354 bits (909), Expect = 1e-95, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E++ S Sbjct: 1 MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P Sbjct: 61 SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + FEL + L+ L+E T F+MA ++ RY+LNG+ F L+ VATDGH Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + ++ + S+I+PRK V E++R+L + D ++ + + + +++++ + Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+Y+ V+P + K + + L+QA R SI+S+ R ++V+LSL ++L +T Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + +A E ++V YN +++ FN Y+L++++ + + +V L + SS I Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S YV+MPMR+ Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366 >gi|307260452|ref|ZP_07542147.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] gi|306869855|gb|EFN01637.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae serovar 12 str. 1096] Length = 367 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA--IP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAILE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + + S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367 >gi|261493281|ref|ZP_05989808.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] gi|261496475|ref|ZP_05992855.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261307678|gb|EEY09001.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. OVINE] gi|261311131|gb|EEY12307.1| DNA-directed DNA polymerase III beta subunit [Mannheimia haemolytica serotype A2 str. BOVINE] Length = 369 Score = 354 bits (908), Expect = 2e-95, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+IT+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T Sbjct: 3 MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 62 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI + L D + IS E + + I G S F L + P S++ Sbjct: 63 QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEED---KAIIKAGRSKFSLATLPASDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 120 PNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++S D +V++ + S I + + + + Sbjct: 178 HRLAVCTMVLNQELL-THSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVFT 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS++ L +T Sbjct: 237 SKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKIT 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y+ M++ FN Y+L++++ + V F L S+SS Sbjct: 297 ANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKCQ-----RVRFSLVDSSSSCL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D S YV+MPMR+ Sbjct: 352 IEDCDNSSAE---------YVIMPMRL 369 >gi|322513484|ref|ZP_08066594.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae ATCC 25976] gi|322120703|gb|EFX92587.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae ATCC 25976] Length = 367 Score = 353 bits (907), Expect = 2e-95, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 209/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +VD G T+ A DI R L + + IS E + S F L + P S++ Sbjct: 61 QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEE---YRALVRAARSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ R+++ D +V++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSLEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367 >gi|115378321|ref|ZP_01465487.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1] gi|115364675|gb|EAU63744.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 444 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 204/386 (52%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + ++ + L A I+ERK T+P+ +VL+ A + + A +I + PA Sbjct: 77 MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 136 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T++A ++DIV+ L D N V+I+ G ++F + E+P Sbjct: 137 VSKPGAVTLNAKYIFDIVQNLPDAQVTLKKLANNY---VDIASGSAHFKIVGMAAEEYPK 193 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +EE +++ + L ++++T FA++++E RY LNG++F + K+ VATDGHR Sbjct: 194 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFEP-QSGGKVRMVATDGHR 252 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ E ++ +I+PRK + E+ R+L D+ + +E+ L+M + Sbjct: 253 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 312 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG+FP YQ VIP +K + V+ + + R++++S+ + AV++ L +KL +T Sbjct: 313 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 372 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD+G+A +++ + Y + I FN +YL++++ + DEV F L +S + Sbjct: 373 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 427 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V+MPMR+ Sbjct: 428 HAP---------GDRSFTAVVMPMRV 444 >gi|162147556|ref|YP_001602017.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209542190|ref|YP_002274419.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|161786133|emb|CAP55715.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus PAl 5] gi|209529867|gb|ACI49804.1| DNA polymerase III, beta subunit [Gluconacetobacter diazotrophicus PAl 5] Length = 374 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 143/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H + E++NTIP+ +VL+ DG L + A+ EI + I A Sbjct: 1 MKLKADRATLLKALAHIQSVAEKRNTIPILANVLINVADGRLTLTATDMEIAVVEEIGAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++T A +LY+I RKL DG I + + G L +FPS Sbjct: 61 TSRNGAVTAPAAVLYEIARKLPDGVAIELDHTGGDAP-LALRAGRYATSLNVLDVDDFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 Y F + ++VL+ L++RT FA++TEE RYYLNGI+ H+ +E L AVATDG Sbjct: 120 MMAGTLPYHFTMPAAVLRGLIDRTRFAISTEETRYYLNGIYLHVAAGDEGSMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E ++ +MP +IVPRK V E+ ++L V V LS++RI + +++++ Sbjct: 180 HRLARVETEVPPGAEEMPGVIVPRKTVAELRKLLDEGTEDVAVGLSDTRIQFTVGTVTLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y VIP NDK LRV + AV RV+ +S R + VKLS+ + L ++ Sbjct: 240 SKLIDGTFPEYDRVIPRGNDKILRVGKRDFSDAVARVAAISQERSRPVKLSIGHNLLTLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +PD G A E ++ V Y+ P++I F +YL +I D I D V F S++ Sbjct: 300 AVSPDQGTAKEELDDNYVTYDSTPLEIGFQARYLNDITDQIDKD------VEFAFSDSSA 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R S A YVLMPMR+ Sbjct: 354 PTIVRDVASPS---------ALYVLMPMRV 374 >gi|219871633|ref|YP_002476008.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165] gi|219691837|gb|ACL33060.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165] Length = 367 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 208/387 (53%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T Sbjct: 1 MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G T+ A DI R L D + IS + + V I S F L + P S++ Sbjct: 61 EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDED---RVFIRADRSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS + + F + + L L+E T F+MA ++ RY+LNG+ F L+ +VATDG Sbjct: 118 PSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E++R++ + SV++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L + L+ A+ R +I+S+ R + V+L+L+ + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADAEVLKHALVRAAILSNERFRGVRLALNQNLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + V L ++SS Sbjct: 295 ANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQ-----RVRISLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D A YV+MPMR+ Sbjct: 350 IEDCDN---------ATAEYVIMPMRL 367 >gi|90415377|ref|ZP_01223311.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2207] gi|90332700|gb|EAS47870.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2207] Length = 366 Score = 353 bits (906), Expect = 3e-95, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 210/386 (54%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK ++ R +L L ++ER+ T+P+ +VLL + L + + E+EI G Sbjct: 1 MKFSLSREALLNPLQLVVGVVERRQTLPILSNVLLTLDGSRLAVTGTDLEVEIIGHADVV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G +TVSA DI R L +GA I F + + + G S F L + P +EFP Sbjct: 61 SADEAGEVTVSARKFLDICRSLPEGANIKFSSSD---GKAQVVSGRSRFTLATLPANEFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E F++A +LKNL++ T FAMA +++RYYLNG+ + ++ KL AVATDGH Sbjct: 118 SVDNGENNIQFDIAGVILKNLIDATSFAMAQQDVRYYLNGMLWEVSAN--KLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+ + + +I ++ I+PRK V E+ R+++ + V+V++ + I ++ + Sbjct: 176 RMALCDAECNIEIGELTKAILPRKGVIELSRLVAD-EGVVRVAMGSNHIRVDGSDYCFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG +P+Y V+P DK + N L+QA R +I+S+ + + V++ LS+ + M Sbjct: 235 KLVDGAYPDYDRVLPKGGDKLVEGNRAELKQAFGRTAILSNEKYRGVRIMLSNGAIKMVA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN YLL++++ + D V L S+SS + Sbjct: 295 NNPEQEEAEEEVGVDYAGDELEIGFNVSYLLDVLNVLKGDG-----VRLTLSDSSSSALV 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 S A YV+MPMR+ Sbjct: 350 EDAADGS---------AVYVVMPMRL 366 >gi|114798873|ref|YP_759292.1| DNA polymerase III subunit beta [Hyphomonas neptunium ATCC 15444] gi|114739047|gb|ABI77172.1| DNA polymerase III, beta subunit [Hyphomonas neptunium ATCC 15444] Length = 373 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 148/388 (38%), Positives = 224/388 (57%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ER D+L+ L H I+ER+ TIP+ +VLL+A G L++ A+ +IE + A+ Sbjct: 1 MKLTIERGDLLDALSHVQNIVERRTTIPILSNVLLEATQGALKLTATDLDIEAVDSALAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T A L+D+VRKL GA++ N + I+ G S F L + P ++F + Sbjct: 61 VSRPGSVTAPAGTLFDVVRKLPSGAEVELEL-NPESQRLTIAAGRSLFELPTLPAADFQT 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177 +E SF++A+ L+++T FA++TEE RYYLNGI+ H ++ L VATD Sbjct: 120 MTPDEGAVSFKIAAKDFARLIDKTRFAISTEETRYYLNGIYLHAAKADDGSAVLRTVATD 179 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA+AE+ K+ +IVPRK VGE R+L D V++ +S+++I L + Sbjct: 180 GHRLALAELKAPKGAEKLTGVIVPRKTVGEARRLLDGLDEDVEIEVSDTKIILRAGRAVL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDG FP+Y VIP NDK++ V+ AVDRVS +S+ R ++VKLS+S+ +L + Sbjct: 240 TSKLIDGSFPDYARVIPKGNDKKMTVDNKAFEAAVDRVSTVSAERSRSVKLSVSNGRLTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V++ + G E + Y PM+I FN KYLL+I I S EV F + S Sbjct: 300 AVNHAETGAGNEEIEAEYESEPMEIGFNAKYLLDIAGQIESS-----EVEFMFNDPASPA 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS A +V+MP+R+ Sbjct: 355 LVLDPSDDS---------ARFVVMPLRV 373 >gi|167854884|ref|ZP_02477660.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] gi|167853951|gb|EDS25189.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755] Length = 367 Score = 352 bits (904), Expect = 5e-95, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 209/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ R +L+ L C ++ + T+PV ++LL+ L + + E+E+T Sbjct: 1 MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G T+ A DI R L D + IS + + V I S F L + P S++ Sbjct: 61 EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDED---RVFIRADRSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS + + F + + L L+E T F+MA ++ RY+LNG+ F L+ +VATDG Sbjct: 118 PSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E++R++ + SV++ + S + +++ + + Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L + L++A+ R +I+S+ R + V+L+L+ + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADAEVLKRALVRAAILSNERFRGVRLALNQNLLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN YLL++++ + V L ++SS Sbjct: 295 ANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQ-----RVRISLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D A YV+MPMR+ Sbjct: 350 IEDCDN---------ATAEYVIMPMRL 367 >gi|58579625|ref|YP_198641.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae KACC10331] gi|84621659|ref|YP_449031.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188574272|ref|YP_001911201.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae PXO99A] gi|58424219|gb|AAW73256.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae KACC10331] gi|84365599|dbj|BAE66757.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae MAFF 311018] gi|188518724|gb|ACD56669.1| DNA polymerase III, beta subunit [Xanthomonas oryzae pv. oryzae PXO99A] Length = 366 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 214/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ A Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMIARTMAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DVQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+LR+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELLRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|289662283|ref|ZP_06483864.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. vasculorum NCPPB702] gi|289667648|ref|ZP_06488723.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. musacearum NCPPB4381] Length = 366 Score = 351 bits (901), Expect = 1e-94, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|294665123|ref|ZP_06730426.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] gi|292605124|gb|EFF48472.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 10535] Length = 366 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|33151999|ref|NP_873352.1| DNA polymerase III subunit beta [Haemophilus ducreyi 35000HP] gi|33148221|gb|AAP95741.1| DNA polymerase III beta chain [Haemophilus ducreyi 35000HP] Length = 367 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 206/387 (53%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ R +L+ L C ++ + T+PV ++LL N L + + E+E+T Sbjct: 1 MQLTITREQLLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLEVELTTQAELE 60 Query: 61 --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 VD G T+ A DI R L + + IS E + I S F L + P S++ Sbjct: 61 QAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQD---RALIRADRSKFNLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWKPEVDFSMEQSTLSRLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++ S+IVPRKAV E+ RILS V++ + + + +++ + + Sbjct: 176 HRLAVCTMALSQELT-THSVIVPRKAVLELSRILSMTADPVRLEIGTNNLRISMNGVVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L L++A+ R +I+S+ + V+L+LS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M+I FN YLL++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQNTAMEIGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + YV+MPMR+ Sbjct: 350 IEDCENSTAE---------YVIMPMRL 367 >gi|87199450|ref|YP_496707.1| DNA polymerase III subunit beta [Novosphingobium aromaticivorans DSM 12444] gi|87135131|gb|ABD25873.1| DNA polymerase III, beta subunit [Novosphingobium aromaticivorans DSM 12444] Length = 375 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 151/392 (38%), Positives = 231/392 (58%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK T+ER+ +L L H ++ER+NTIP+ +VL++A D + + A+ +++I + A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAAPDSTVRLMATDLDLQIIETMSA 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 SV+ G+ITVSAHLL+DI RKL DG+Q+S + + + G S F L + P +F Sbjct: 61 VSVEAPGAITVSAHLLFDIARKLPDGSQVSLETSD---NRMIVKAGRSRFQLPTLPRDDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATD 177 P E + SFE+ + L L++RT FA++TEE RYYLNGIF H++++ L A ATD Sbjct: 118 PVIVEGDLPTSFEIPARTLAELIDRTRFAISTEETRYYLNGIFLHVSDDPQPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES-- 234 GHRLA + MP +IVPRK VGE+ ++L DS+V + LS S+I + Sbjct: 178 GHRLARFTITRPDGAEGMPDVIVPRKCVGELRKLLEEVLDSAVLIDLSASKIRFTLGGEN 237 Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ +LIDG FP+Y VIP NDK L+++ + + VDRV+ +++ + +AVK++L +D Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKLDPRSFFEGVDRVATIATEKTRAVKMALEND 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ ++V +PD G A E + Y+ +I FN YL +I+ I D V L + Sbjct: 298 RVTLSVTSPDNGTAAEELPADYSSTGFEIGFNANYLKDILSQIDG-----DTVELHLADA 352 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR KD+K A YVLMPMR+ Sbjct: 353 GAPTLIR---------KDDKSAALYVLMPMRV 375 >gi|21240776|ref|NP_640358.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv. citri str. 306] gi|78045558|ref|YP_361733.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325926218|ref|ZP_08187576.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118] gi|21106040|gb|AAM34894.1| DNA polymerase III beta chain [Xanthomonas axonopodis pv. citri str. 306] gi|78033988|emb|CAJ21633.1| DNA polymerase III beta chain [Xanthomonas campestris pv. vesicatoria str. 85-10] gi|325543400|gb|EGD14825.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118] Length = 366 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|21229480|ref|NP_635397.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66766354|ref|YP_241116.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. campestris str. 8004] gi|188989398|ref|YP_001901408.1| DNA polymerase III subunit beta [Xanthomonas campestris pv. campestris str. B100] gi|21110940|gb|AAM39321.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris str. ATCC 33913] gi|66571686|gb|AAY47096.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris str. 8004] gi|167731158|emb|CAP49330.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris] Length = 366 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 126/385 (32%), Positives = 215/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q N+G L + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTVS---QTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ + IIVPRK V E+LR+L + D V++ L S I + ++ + + Sbjct: 176 LALCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|117923320|ref|YP_863937.1| DNA polymerase III subunit beta [Magnetococcus sp. MC-1] gi|117607076|gb|ABK42531.1| DNA polymerase III, beta subunit [Magnetococcus sp. MC-1] Length = 376 Score = 350 bits (899), Expect = 2e-94, Method: Composition-based stats. Identities = 120/393 (30%), Positives = 198/393 (50%), Gaps = 25/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V R L+ L ++E++NT+P + LL+A+ L + A+ E+ + PA Sbjct: 1 MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+I VSA L++IVR+L + E G + ++ G + F L FP Sbjct: 61 VESSGAIAVSARKLFEIVRELPQDSLRLRS---EAGERLVLTCGRARFTLVGIRADIFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--------NEEDLKLC 172 E SF L+ L ++ +THFAM+ +E RY LNGI H+ E+ + Sbjct: 118 FPETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVR 177 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+AE+ + + + +I+PRK V EI +++ D +V++ L E+ I ++ Sbjct: 178 IVATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSK 237 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + ++ +L+ G FPNYQ VIP N L + L V R+ ++S + + ++++LSS Sbjct: 238 PGIVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSS 297 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D + ++ NP+ A E M + M + FN +YL EI+ + D V +L Sbjct: 298 DHIKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANG-----DTVRMKLRD 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V + + + YVLMPMR+ Sbjct: 353 EESPVLVE---------EHSATGYLYVLMPMRV 376 >gi|238898808|ref|YP_002924490.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] gi|229466568|gb|ACQ68342.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa 5AT (Acyrthosiphon pisum)] Length = 368 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 124/388 (31%), Positives = 214/388 (55%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ N+ +L + A+ ++E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVISPLSARPTMPILGNLLLQVNENVLFLTATDLQMEMVVRVVLS 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS TV A +DI R L +G+ I+ + G + + G S F L + P S Sbjct: 61 HSDLHESGSTTVPARKFFDIWRGLLEGSTITVTLD---GDRLLVYSGRSRFSLSTLPSSG 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + + +F L LK L++ T F+MA +++RYYLNG+ F ++L+ VATD Sbjct: 118 FPGLDDWKTQVAFSLPQETLKKLIDATQFSMAHQDVRYYLNGMLFETENKELR--TVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLAV + + S+IVPRK V E+ R+L + VK+ + E I ++++L+ Sbjct: 176 GHRLAVCSMSTDETLP-SYSVIVPRKGVIELGRLLEASVHPVKLHIGEHNIRAHLDNLTF 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LID FP+Y+ V+P + +K L C L+QA RV+I+S+ + + V+L LS +++ + Sbjct: 235 TCKLIDARFPDYRRVLPKNPNKILEAKCDLLKQAFSRVAILSNEKFRGVRLYLSHNQMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +NP+ +A E +++ Y ++I N Y+L+I++ + D+ V F L ++ SS+ Sbjct: 295 TANNPEQEEAEEILDIEYEGEELEIGLNVSYILDILNILKCDK-----VRFLLINAASSL 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + Y+LMPMR+ Sbjct: 350 QIEDHSSQMVS---------YILMPMRL 368 >gi|119947309|ref|YP_944989.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37] gi|119865913|gb|ABM05390.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37] Length = 367 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 122/387 (31%), Positives = 214/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHA-CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M ++ R L L + + +P+ ++L++ D L + + E+E+ I Sbjct: 1 MHFSISREAFLRPLQLVVSSVAGGRPALPIMANILIEVKDNQLSLTGTDLEVELIAVIAL 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 G ITV A L DI R L + +I F + E +V I G S + L S P +F Sbjct: 61 ENPSENGVITVPARKLLDICRGLSEPCEIKFQVKEE---KVTIRSGRSRYLLSSLPAVDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + + K L+E T FAMA++++RYYLNG++F +E+ L+ +VATDG Sbjct: 118 PNIESWQSLVELTVPQAEFKKLIEFTQFAMASQDVRYYLNGMYFEASEQTLR--SVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + Q+ + S+IVPRK V E++++L + ++V + + ++ + I+ + Sbjct: 176 HRLASCSIKL-NQVIEQQSVIVPRKGVIELVKLLDNDQANVTIQIGQNNLRAVIDGFIFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +L+DG FP+Y+ VIP + DKEL N +L+QA R +I+S+ + + V+L LS + L +T Sbjct: 235 TKLVDGRFPDYRRVIPKNGDKELISNRESLKQAFSRAAILSNEKFRGVRLILSENLLQIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y+ ++I FN Y+L++++ + S ++V +S+ S Sbjct: 295 ANNPEREEAEEYIDVDYHSANLEIGFNVSYVLDVLNTLKS-----EQVKITFSNSDHSAL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D D ++ YVLMPMR+ Sbjct: 350 IESIDSD---------DSLYVLMPMRL 367 >gi|119471659|ref|ZP_01614044.1| DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [Alteromonadales bacterium TW-7] gi|119445438|gb|EAW26725.1| DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [Alteromonadales bacterium TW-7] Length = 367 Score = 350 bits (898), Expect = 2e-94, Method: Composition-based stats. Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ + Sbjct: 1 MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ +T+ A L DI + L +G+ I+ ++ ++ ++ G S F L + ++FP Sbjct: 61 DDIADTKLTLPAKKLLDICKSLPEGSDITLSLQDH---QLLLTSGKSRFSLTTLSAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDGH Sbjct: 118 NLEEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I+PRK V EI+R++ + D V + + I + + + Sbjct: 176 RLAIAQKKLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 236 KLVDGRFPDYRRVLPRGGDKTIIANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V F L SNSS I Sbjct: 296 NNPEQEQAEEVVEVNYQGDELEIGFNVSYVLDVLNTLKT-----EDVQFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G D A YV+MPMR+ Sbjct: 351 EGAGDDE---------AMYVVMPMRL 367 >gi|315125113|ref|YP_004067116.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913] gi|315013626|gb|ADT66964.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913] Length = 367 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ ++ Sbjct: 1 MQITISREQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVASVFVG 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 DV +T+ A L DI + L DG+ ++ ++ ++ ++ G S F L + +FP Sbjct: 61 DDVADTKLTLPAKKLLDICKSLPDGSDLTLSLQDH---QLLLTSGKSRFSLTTLAAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDGH Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I+PRK V EI+R++ + V + + I + + + Sbjct: 176 RLAIAQKQLGQSLNTQRQLIIPRKGVQEIMRLMVADQELVTIQFGANHIRIIDIEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V+F L SNSS I Sbjct: 296 NNPEQEQAEEVVEVMYEGDDLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G + A YV+MPMR+ Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367 >gi|53802864|ref|YP_115419.1| DNA polymerase III subunit beta [Methylococcus capsulatus str. Bath] gi|53756625|gb|AAU90916.1| DNA polymerase III, beta subunit [Methylococcus capsulatus str. Bath] Length = 366 Score = 349 bits (897), Expect = 3e-94, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 197/385 (51%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R D+L L +IER+ T+P+ +VL++ G +E+ + E+++ Sbjct: 1 MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDME 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TV A L DI R L +G +++F + E V++ G S F L + P +P+ Sbjct: 61 GKESGRFTVPARKLMDICRLLPEGGELAFDVKPE---RVSLQCGKSRFILGALPAENYPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F+ + +L+ +E+T FAMA +++RYYLNG+ I + ++ AVA+DGHR Sbjct: 118 FEHGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQG--RIRAVASDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E + II+PRK V E+ R+L+ + S V +S + + + + S +V+ Sbjct: 176 LALFEDAVDGMPDVARQIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFAVK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G +P+Y+ VIP + + + V+ LR A+ RV+++S+ + + V L + + + Sbjct: 236 LVEGRYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLRAQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A + + + + FN YLL+ I+ V D V +N S I Sbjct: 296 NPEHEEAEDEVPADVSGEAFAVGFNASYLLDAINA-----VASDAVRMSFTDANGSCLIE 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + +++MPMR+ Sbjct: 351 D---------LSDSRYRFIVMPMRL 366 >gi|58038493|ref|YP_190457.1| DNA polymerase III subunit beta [Gluconobacter oxydans 621H] gi|58000907|gb|AAW59801.1| DNA polymerase III, beta chain [Gluconobacter oxydans 621H] Length = 374 Score = 349 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 139/390 (35%), Positives = 216/390 (55%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R+ + L H + E++NTIP+ +VL+ D +L + A+ EI + +PAS Sbjct: 1 MKFKVDRTLLQRALAHIHGVAEKRNTIPILANVLMSYQDDVLRLTATDMEIAVVEDVPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV A +L++IVRKL DG + F ++ + + G L P +FP+ Sbjct: 61 GERSGSTTVPAAVLFEIVRKLPDGVALEFDHQDSEAP-LALRAGRYATSLNVLPVDDFPA 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 + + F + ++ L+ L++RT FA++ EE RYYLNGI+ H+ E L AVATDG Sbjct: 120 MVAGDLPHRFSIPAATLRGLIDRTKFAISNEETRYYLNGIYLHVAENGSIPMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E ++ MP +I+PRK + E+ ++L + ++VSLS++RI + ++ Sbjct: 180 HRLARVETELPEGARGMPGVIIPRKTINELRKLLDEGAADLEVSLSDTRIQFQAGPVLLT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP ND+ LRV + AV RV+ +S R + VKLS++ + L ++ Sbjct: 240 SKLIDGTFPEYERVIPKGNDRILRVGKRDFAAAVGRVAAISQERSRPVKLSVTQNMLNLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +PD G A E ++ V Y+ P++I F +YL +I D I EV F S++ Sbjct: 300 ATSPDQGVAHEELDENAVSYDAAPIEIGFQARYLTDITDQID------VEVEFAFSDSSA 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R S A YVLMPMR+ Sbjct: 354 PTIVRDTASPS---------ALYVLMPMRV 374 >gi|325922760|ref|ZP_08184494.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865] gi|325546756|gb|EGD17876.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865] Length = 366 Score = 349 bits (897), Expect = 4e-94, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 214/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+LR+L + D V++ + S I + ++ + + Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|285016823|ref|YP_003374534.1| DNA polymerase III subunit beta protein [Xanthomonas albilineans GPE PC73] gi|283472041|emb|CBA14548.1| probable dna polymerase III subunit beta protein [Xanthomonas albilineans] Length = 366 Score = 349 bits (896), Expect = 4e-94, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 214/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV + L+Q + G L + + E+E+ I Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVHGGQLSLTGTDLEVEMVSRIAVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L++IVR L DG++++ N+ ++ + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFEIVRALPDGSKVTVSLSND---KITVQTGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F ++++ L+ VATDGHR Sbjct: 118 VDEVETTERVVVQEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDKTLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ IIVPRK V E+ R+L D V++ + S + + ++ + + Sbjct: 176 LALCETELENAGGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRNDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++++ LR A+ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYETVIPIGADREVKLDREILRAALQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + ++ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEVEADTKVSDLAIGFNVNYLLDALSALR-----EEFVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + +V+MP+R+ Sbjct: 351 ---------EASSARSRHVVMPLRL 366 >gi|294627437|ref|ZP_06706021.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] gi|292598258|gb|EFF42411.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp. aurantifolii str. ICPB 11122] Length = 366 Score = 349 bits (895), Expect = 5e-94, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEIELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEAETKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|319785622|ref|YP_004145097.1| DNA polymerase III subunit beta [Pseudoxanthomonas suwonensis 11-1] gi|317464134|gb|ADV25866.1| DNA polymerase III, beta subunit [Pseudoxanthomonas suwonensis 11-1] Length = 366 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 212/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R +L+ L ++ER+ T+PV + L+Q DG L + + E+E+ Sbjct: 1 MRFTLQREALLKPLAQVVNVVERRQTLPVLANFLVQVQDGQLSLTGTDLEVEMIARAAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G IT+ A L++IVR L DG++++ G +V + G S F L + P ++FPS Sbjct: 61 DAVDGEITIPARKLFEIVRALPDGSRVTISL---AGDKVTVQAGRSRFSLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + ++ L+ VATDGHR Sbjct: 118 VDEVEATERITVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDQSLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E + + IIVPRK V E+ R+L D S+++ + S I + + +S + + Sbjct: 176 LALCEAPLEQPVGTKRQIIVPRKGVTELQRLLEGGDRSLELEVGRSHIRVKRDDVSFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP +KE+RV+ +R A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGRFPDYEAVIPIGAEKEVRVDREVIRAALQRAAILSNEKYRGVRVEISPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ +V L +NSS +R Sbjct: 296 NPEQEEAQEEIEAETKVDGLAIGFNVNYLLDALGALR-----DEHIVIALRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V+MP+R+ Sbjct: 351 EAGSD---------KCRHVVMPLRL 366 >gi|325915700|ref|ZP_08178005.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325538117|gb|EGD09808.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 366 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 213/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ IIVPRK V E+LR+L + D V++ + S I + ++ + + Sbjct: 176 LALCETELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|166709897|ref|ZP_02241104.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzicola BLS256] Length = 366 Score = 349 bits (895), Expect = 6e-94, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q DG + + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLVTLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+++ IIVPRK V E+ R+L D V++ + S I + ++ + + Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ V+P D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVMPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|77358984|ref|YP_338559.1| DNA polymerase III subunit beta [Pseudoalteromonas haloplanktis TAC125] gi|76873895|emb|CAI85116.1| DNA polymerase III, beta-subunit; processivity clamp of DNA polymerase III [Pseudoalteromonas haloplanktis TAC125] Length = 367 Score = 348 bits (894), Expect = 8e-94, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ ++ Sbjct: 1 MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLEIELVASVFVG 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ +T+ A L DI + L DG+ ++ + ++ ++ G S F L + +FP Sbjct: 61 DDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEH---QLLLTSGKSRFSLTTLAAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDGH Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I+PRK V EI+R++ + + V + + I + + + Sbjct: 176 RLAIAQKQLKQSLNTQRQLIIPRKGVQEIMRLMVADEELVTIQFGANHIRIIDIEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V+F L SNSS I Sbjct: 296 NNPEQEQAEEVVEVGYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G + A YV+MPMR+ Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367 >gi|83749734|ref|ZP_00946711.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551] gi|207727477|ref|YP_002255871.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum MolK2] gi|207741916|ref|YP_002258308.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum IPO1609] gi|83723586|gb|EAP70787.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551] gi|206590714|emb|CAQ56326.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum MolK2] gi|206593302|emb|CAQ60229.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum IPO1609] Length = 371 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 118/391 (30%), Positives = 205/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + TV+A L DI+R + DG + +++ G S F LQ+ EF Sbjct: 61 GAGNGDIATTVAARKLVDILRAMPDGEVTLTLNDK----RMSVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ T L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|332533699|ref|ZP_08409558.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis ANT/505] gi|332036863|gb|EGI73324.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis ANT/505] Length = 367 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 216/386 (55%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+IT+ R L+ L IERK+T+P+ +VLL +G L + + EIE+ + Sbjct: 1 MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60 Query: 61 VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ +T+ A L DI + L DG+ I+ + ++ ++ G S F L + +FP Sbjct: 61 DDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEH---QLLLTSGKSRFSLTTLSADDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + F+L L+ L+E THF+MA +++RYYLNG+ F ++ D+K VATDGH Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I+PRK V EI+R++ + D V + + I + + + Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P DK + N LR A RVSI+S+ + + V+L+LS+ L +T Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + V Y ++I FN Y+L++++ + + ++V+F L SNSS I Sbjct: 296 NNPEQEQAEEVVEVSYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G + A YV+MPMR+ Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367 >gi|300689716|ref|YP_003750711.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07] gi|299076776|emb|CBJ49383.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07] Length = 371 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + TV+A L DI+R + DG + +++ G S F LQ+ EF Sbjct: 61 GAGNGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMSVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEASDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|21326650|gb|AAL30090.1| DNA polymerase III beta chain [Xanthomonas campestris pv. campestris] Length = 366 Score = 348 bits (893), Expect = 9e-94, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 214/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV ++L+Q N+G L + + E+E+ Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L+DI+R L DG++++ + G +V + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFDILRALPDGSRVTVS---QTGDKVTVQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + E ++ + IIVPRK V E+LR+L + D V++ L S I + ++ + + Sbjct: 176 LPLCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + V++ +S +L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+ VV +L +NSS +R Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MP+R+ Sbjct: 351 EASSE---------KSRHVVMPLRL 366 >gi|17548158|ref|NP_521560.1| DNA polymerase III subunit beta [Ralstonia solanacearum GMI1000] gi|17430465|emb|CAD16938.1| probable dna polymerase III (beta chain) protein [Ralstonia solanacearum GMI1000] Length = 371 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + TV+A L DI+R + DG + +++ G S F LQ+ EF Sbjct: 61 GAGNGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMSVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|73539708|ref|YP_294228.1| DNA polymerase III subunit beta [Ralstonia eutropha JMP134] gi|72117121|gb|AAZ59384.1| DNA polymerase III, beta subunit [Ralstonia eutropha JMP134] Length = 371 Score = 348 bits (893), Expect = 1e-93, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 208/391 (53%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGNDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E E+ S L K+L+ HFAMA ++IRYYLNG+ ++ + K+ AVATD Sbjct: 117 PTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVATD 174 Query: 178 GHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V++ + + +I+PRK + E+ R+L D V+V L+ +++ + + Sbjct: 175 GHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFSFAN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHM 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ S ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I + D N YV+MPMRI Sbjct: 350 SSALITVPEDD---------NFKYVVMPMRI 371 >gi|85708877|ref|ZP_01039943.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1] gi|85690411|gb|EAQ30414.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1] Length = 375 Score = 347 bits (892), Expect = 1e-93, Method: Composition-based stats. Identities = 149/392 (38%), Positives = 226/392 (57%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59 MK T+ER+ +L L H ++ER+NTIP+ +VL+ A+DG +++ A+ ++++ + A Sbjct: 1 MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDASDGGSVKVMATDLDLQVVETMNA 60 Query: 60 S-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 S V+ G+ITVSAHLL+DI RKL DGAQ+S + + G + F L + P +F Sbjct: 61 SSVESPGAITVSAHLLFDIARKLPDGAQVSLETAE---NRMEVKAGRARFKLPTLPRDDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATD 177 P E + SFE+ + L +++ T FA++TEE RYYLNGIF H+ +ED L A ATD Sbjct: 118 PVIVEGDLPTSFEIPARTLAQMIDATRFAISTEETRYYLNGIFLHVTDEDEPVLKAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234 GHRLA + MP +IVPRKAV E+ ++L D +V+V LS S+I + Sbjct: 178 GHRLARFTLARPDGAEGMPDVIVPRKAVAELRKLLEEALDGAVQVDLSASKIRFTLGGEG 237 Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + ++ +LIDG FP+Y VIP NDK L+V+ + VDRV+ +++ + +AVK+ L +D Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKLFFEGVDRVATIATEKTRAVKMGLDAD 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 K+ ++V +PD G A E + Y +I FN YL +I+ + +E+ L + Sbjct: 298 KVTLSVTSPDNGNAAEELMADYKSDGFEIGFNANYLKDILGQFDA-----EEIELHLADA 352 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR D A YVLMPMR+ Sbjct: 353 GAPTLIRESDTSP---------ALYVLMPMRV 375 >gi|190572093|ref|YP_001969938.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia K279a] gi|254521676|ref|ZP_05133731.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14] gi|190010015|emb|CAQ43620.1| putative DNA polymerase III beta subunit [Stenotrophomonas maltophilia K279a] gi|219719267|gb|EED37792.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14] Length = 366 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 214/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV + L+Q +G L + + E+E+ I Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L++I+R L DG++I+ + G ++ + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFEIIRALPDGSRITVS---QTGDKITVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E D+ IIVPRK V E+ R+L S D +++ + S + + + ++ + + Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V+ LR ++ R +I+S+ + + +++ +S L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+EV+ +L SNSS +R Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + +V+MP+R+ Sbjct: 351 ---------ESSSEKSRHVVMPLRL 366 >gi|300112747|ref|YP_003759322.1| DNA polymerase III subunit beta [Nitrosococcus watsonii C-113] gi|299538684|gb|ADJ27001.1| DNA polymerase III, beta subunit [Nitrosococcus watsonii C-113] Length = 367 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 128/386 (33%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R +I+ L C ++ER++T+P+ +VLL D L + A+ EIEI A Sbjct: 1 MRFSIKREEIVRHLVTICGVVERRHTLPILSNVLLSVKDSRLSLMATDLEIEIKTAFDIL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+SA +I R L + + + + I G S F L + P +FPS Sbjct: 61 SPEEGKITISARKFLEICRALPSQSALEAQYKE---GQFYIHSGRSRFTLSTLPAEDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V EL + LK L+ RT F MA +++RYYLNG+ + EE + AVATDGHR Sbjct: 118 IDSIDAVAELELTQAELKKLLYRTVFCMAHQDVRYYLNGLLLELTEEA--IHAVATDGHR 175 Query: 181 LAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+A + Q I+PRKA+ E++R+L + SV++ +++ + LS S Sbjct: 176 LALASLAKGSQQAGTEIQSIIPRKAILELVRLLEESNDSVRLKFGTNQMRAEFQGLSFST 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG+FP+Y+ VIP +K+ + +QA+ RV+I+++ + + V L LS+ KL V Sbjct: 236 KLIDGQFPDYKRVIPVGCEKQFVADREKFKQALVRVNILTNDKYRGVHLHLSALKLQAIV 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G A E +++ Y ++I FN YL++++ I + +E+ ++NSS I Sbjct: 296 TNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLSIIDT-----EEIKLTFTNANSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D K ++ YV+MPMR+ Sbjct: 351 TPID---------KADSKYVVMPMRL 367 >gi|194363780|ref|YP_002026390.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia R551-3] gi|194346584|gb|ACF49707.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia R551-3] Length = 366 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 215/385 (55%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L+ L ++ER+ T+PV + L+Q +G L + + E+E+ I Sbjct: 1 MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G T+ A L++I+R L DG++I+ + G ++ + G S F L + P ++FPS Sbjct: 61 DAQDGETTIPARKLFEIIRALPDGSRITVS---QTGDKITVQAGRSRFTLATLPSNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + LK L+ERT FAMA +++RYYLNG+ F + + L+ VATDGHR Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E D+ IIVPRK V E+ R+L S D +++ + S + + + ++ + + Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++VN +LR ++ R +I+S+ + + +++ +S L ++ Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVNRESLRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + + D+EV+ +L SNSS +R Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + +V+MP+R+ Sbjct: 351 ---------ESSSEKSRHVVMPLRL 366 >gi|299065056|emb|CBJ36217.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CMR15] Length = 371 Score = 347 bits (891), Expect = 2e-93, Method: Composition-based stats. Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + TV+A L DI+R + DG + +++ G S F LQ+ EF Sbjct: 61 GAGNGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMSVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDIDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNGFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|300702376|ref|YP_003743976.1| DNA polymerase III subunit beta [Ralstonia solanacearum CFBP2957] gi|299070037|emb|CBJ41322.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CFBP2957] Length = 371 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 118/391 (30%), Positives = 205/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ N + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + TV+A L DI+R + DG + +++ G S F LQ+ EF Sbjct: 61 GAGNGDIATTVAARKLVDILRAMPDGEVSLTLNDK----RMSVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ T L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|241661627|ref|YP_002979987.1| DNA polymerase III subunit beta [Ralstonia pickettii 12D] gi|240863654|gb|ACS61315.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12D] Length = 371 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 116/391 (29%), Positives = 200/391 (51%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L+ + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GAGAGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMTVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|187927114|ref|YP_001897601.1| DNA polymerase III subunit beta [Ralstonia pickettii 12J] gi|309780181|ref|ZP_07674932.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA] gi|187724004|gb|ACD25169.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12J] gi|308920884|gb|EFP66530.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA] Length = 371 Score = 347 bits (890), Expect = 2e-93, Method: Composition-based stats. Identities = 116/391 (29%), Positives = 200/391 (51%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L+ + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GAGAGDVATTVAARKLVDILRAMPDGEVALTLNDK----RMTVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E ++ L LK+L+ HFAMA ++IRYYLNG+ ++ + ++ AVATD Sbjct: 117 PTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V+ A +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D+ YV+MPMRI Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371 >gi|296131552|ref|YP_003638799.1| DNA polymerase III, beta subunit [Thermincola sp. JR] gi|296030130|gb|ADG80898.1| DNA polymerase III, beta subunit [Thermincola potens JR] Length = 370 Score = 346 bits (887), Expect = 4e-93, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 196/386 (50%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +++++ + A R + KN +P+ +L++ + L + A+ E+ I +P + Sbjct: 1 MKFTSNKNNMVYGVQVAQRAVSPKNPLPILSGILMKLKNNNLCLTATDLELGIECTVPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ + A L +IVRKL D + F + + + S + + EFP Sbjct: 61 GSSEGSVVLPAKYLSEIVRKLPD--VLIEFSVEKENNVATLKYAQSKTTIHGYSADEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ + + KN++++ FA A +E R G+ F + ++L+L VATD HR Sbjct: 119 LPSLDGETTYVIKQELFKNMIKQVTFATAADENRPIFTGVLFEVEGDELRL--VATDTHR 176 Query: 181 LAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA+ I + + ++P KA+ EI+RI+ ++ VK++ S +++ + ++++ + Sbjct: 177 LALRIGAIGSHGYSGEKTGALIPAKALNEIVRIMPPENEEVKITFSNNQVVMELDNIRLI 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G+FPNY+ VIP ++R+N AV+R S+++ ++L++ + L + Sbjct: 237 SRLIEGQFPNYKQVIPQGCKSKIRLNTREFLDAVERASLLAKDGSNVIRLAVQNHTLIIN 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD+G E + + I FN KYL++++ I + +EV L S S Sbjct: 297 SNSPDIGTIHEELPIVLEGEETQIAFNSKYLIDVLRVIDA-----EEVFLELTGSLSPGI 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + D N Y+++P+R Sbjct: 352 VKPVEGD---------NYLYLILPVR 368 >gi|74316020|ref|YP_313760.1| DNA polymerase III subunit beta [Thiobacillus denitrificans ATCC 25259] gi|74055515|gb|AAZ95955.1| DNA polymerase III, beta chain [Thiobacillus denitrificans ATCC 25259] Length = 367 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 120/384 (31%), Positives = 218/384 (56%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I ER+ +L L ++ER++T+P+ ++LL+ G L + A+ E++++ + A Sbjct: 4 IQSERNALLSALSAVVGVVERRHTLPILSNLLLEKKAGTLTLLATDLELQVSTRLEAQGG 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 +IT++A L+DIVR L D A + ++ ++V +S G S F LQ+ P ++FP + Sbjct: 64 DDFAITIAARKLFDIVRALPDSASVKLDTKD---SQVVVSAGKSRFTLQTLPAADFPRVE 120 Query: 123 EEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + L LK L++ FAMA+++IRYYLNG+ ++ + L++ VATDGHRL Sbjct: 121 TGAGVGTVVRLPQKTLKRLLQLVQFAMASQDIRYYLNGMLLVLDGQQLRV--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 + AE + A +I+PRK V E+ ++LS D V++ + +++ + + + ++ Sbjct: 179 SYAETTLDAPT-DAQEVIIPRKTVIELSKLLSDSDEPVELRIGSNQVTIMLPGTELVTKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG+FP+YQ VIP + + L+ N + QA+ R +I+S+ + + V+L +S + L + +N Sbjct: 238 VDGKFPDYQRVIPANQPRHLKANRQTVVQALQRAAILSNEKFRGVRLVMSDNTLGIVCNN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A + + V YN P+D+ FN YLL+ + +++ DE+ L +NSS+ + Sbjct: 298 NEQEEAADEIEVSYNGDPLDVGFNVTYLLDGLGAVNT-----DEITLSLGDANSSMLLTS 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 + + YV+MPMRI Sbjct: 353 E---------GEPGFKYVVMPMRI 367 >gi|300309348|ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1] gi|300072133|gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae SmR1] Length = 368 Score = 345 bits (886), Expect = 6e-93, Method: Composition-based stats. Identities = 114/388 (29%), Positives = 203/388 (52%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ +R +L L I+ER++T+P+ ++L++ + + ++ E++IT Sbjct: 1 MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 S + TV+A L DI+R L D ++S N+ + + G S F LQ+ EF Sbjct: 61 GSGSEATATTVAARKLLDILRALPDSGEVSISLSNK---RLTVQSGKSRFALQTLAAEEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E Y L LK+L HFAMA ++IRYYLNG+ + ++ + AVATD Sbjct: 118 PTVAQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKN--VIAVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA +V+ + +I+PRK + E+ R+L D V++ ++ +++ L + + Sbjct: 176 GHRLAFCQVETEEDFPRQE-VIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP+Y V+P ++ L +++ R +IM+S + + V+ ++ L + Sbjct: 235 ISKLVEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N D +A+E + + Y +DI FN YLL++++N+ +D V L +NSS Sbjct: 295 SSTNADQEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLK-----NDYVNIALGDANSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 350 LITIPDN---------ADFKYVVMPMRI 368 >gi|240950076|ref|ZP_04754378.1| DNA polymerase III subunit beta [Actinobacillus minor NM305] gi|240295451|gb|EER46206.1| DNA polymerase III subunit beta [Actinobacillus minor NM305] Length = 367 Score = 345 bits (885), Expect = 8e-93, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58 M T+ R +++ L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MLFTITREQLIKPLQQVCGVLSSRPTLPVIANLLLEVEGDRLLMTGTDLEVELTTEARLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 VD T+ A DI R L + + IS E + + + G S F L + P S++ Sbjct: 61 QEVDFSEKFTIPAKKFLDISRSLPEDSLISMSFEED---KAILKAGRSKFSLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++A S+IVPRKAV E+ R++S+ V++ + S I +++ + + Sbjct: 176 HRLAVCTMALTQELA-SHSVIVPRKAVLELSRLVSANHDIVRLEIGSSNIRISMNGIVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L + L++A+ R +I+S+ + + V+LSL+ + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLNDNVLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN Y+L++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D ++ YV+MPMR+ Sbjct: 350 IEDCDNNTAE---------YVIMPMRL 367 >gi|330814958|ref|YP_004358663.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3] gi|327367351|gb|AEA58707.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3] Length = 368 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 198/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGEQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 175 GHRLAYSSMKIEGGAFPRQEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D + L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDNIEVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|330994265|ref|ZP_08318193.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1] gi|329758732|gb|EGG75248.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1] Length = 380 Score = 344 bits (884), Expect = 1e-92, Method: Composition-based stats. Identities = 145/390 (37%), Positives = 214/390 (54%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R +L+ L H + E++NTIP+ +VL+ DG + + A+ EI + + A Sbjct: 7 MKLKADRVTLLKALAHIQSVAEKRNTIPILANVLINVVDGAMTLTATDMEIAVVEGVAAE 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++T A +LY+IVRKL DGAQ+ + + G L +FPS Sbjct: 67 TQRDGAVTAPAAVLYEIVRKLPDGAQVELDHAGGDAP-LGLRAGRFATSLNVLDVDDFPS 125 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 + F + + VL+ L++RT FA++TEE RYYLNGIF H+ E + L AVATDG Sbjct: 126 MMAGALPHEFSMPAQVLRGLIDRTRFAISTEETRYYLNGIFLHVAEGETGPVLRAVATDG 185 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E ++ A A MP +IVPRK V E+ ++L V V+LS++RI +I +++++ Sbjct: 186 HRLARVETELPAGSAGMPGVIVPRKTVAELRKLLDEGPEQVAVALSDTRIQFSIGNITLT 245 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP NDK LRV AV RV+ +S R + VKLS+ + L ++ Sbjct: 246 SKLIDGTFPEYERVIPHGNDKILRVGKKIFSDAVSRVAAISQERSRPVKLSMGHNLLTLS 305 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D G A E ++ V Y P++I F +YL +I D + EV F S++ Sbjct: 306 AASQDQGTATEELDENHVSYAASPIEIGFQARYLNDITDQVER------EVEFAFSDSSA 359 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D S A YVLMPMR+ Sbjct: 360 PTIVRDVDSPS---------ALYVLMPMRV 380 >gi|257464819|ref|ZP_05629190.1| DNA polymerase III subunit beta [Actinobacillus minor 202] gi|257450479|gb|EEV24522.1| DNA polymerase III subunit beta [Actinobacillus minor 202] Length = 367 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA--IP 58 M T+ R +L L C ++ + T+PV ++LL+ L + + E+E+T + Sbjct: 1 MLFTITREQLLRPLQQVCGVLASRPTLPVIGNLLLEVEGERLSMTGTDLEVELTTQAQLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V+ T+ A DI + L D + IS E + + I G S F L + P S++ Sbjct: 61 QAVNFSEKFTIPAKKFLDIAKSLPDDSVISIAFEAD---KAVIKAGRSKFSLATLPASDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + F + S L L++ T F+MA ++ RY+LNG+ F L+ VATDG Sbjct: 118 PNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLAV + + ++A S+IVPRKAV E+ R++S+ V++ + S I +++ + + Sbjct: 176 HRLAVCTMALTQELA-SHSVIVPRKAVLELSRLVSTSHDIVRLEIGSSNIRISMNGIVFT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y+ V+P + D+ L + L++A+ R +I+S+ + + V+LSLS + L +T Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLSDNILKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP+ +A E ++V Y M++ FN Y+L++++ + + V F L ++SS Sbjct: 295 ANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D ++ YV+MPMR+ Sbjct: 350 IEDCDNNTAE---------YVIMPMRL 367 >gi|237747156|ref|ZP_04577636.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS] gi|229378507|gb|EEO28598.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS] Length = 368 Score = 344 bits (882), Expect = 2e-92, Method: Composition-based stats. Identities = 115/381 (30%), Positives = 207/381 (54%), Gaps = 22/381 (5%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCG 65 R ++L L I+ER++T+P+ ++L++ + ++ EI+I + + Sbjct: 8 RDNLLRPLQIVSGIVERRHTLPILANILIRKEGNAVSFLSTDTEIQIVTHAEIGTAEEDA 67 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124 + TV+A L DI+R L D A+I+ ++ + +S G S F LQ+ P ++FP+ + Sbjct: 68 TTTVAARKLLDILRALPDSAEIAISLNDK---RLVVSAGKSRFSLQTLPAADFPTVSQPL 124 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 EY S L+ LKNL+ +FAMA ++IRYYLNG+ +K AVATDGHRLA Sbjct: 125 EYQTSVTLSQKSLKNLLGMVYFAMAQQDIRYYLNGLLLQTGGNTIK--AVATDGHRLAFC 182 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 +++ + + +I+PRK + E+ R+L + V++ +S +++ + + +L++G Sbjct: 183 QMETEQEFSNN-DVIIPRKTILELQRLLEESEEPVRIDISGAQVRFVFGDVELISKLVEG 241 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +FP+Y VIP + ++ L++A+ R +IM+S + + ++ L+ L ++ N D Sbjct: 242 KFPDYTRVIPKGYKNKFTISRELLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 +AIE + + Y+ +DI FN YLL+++ N+ +DE+ L +NSS + D Sbjct: 302 EEAIEEIELDYDGDNIDIGFNVTYLLDVLGNLK-----NDEISIELGDANSSALMSVPDN 356 Query: 365 DSKNNKDNKVNAFYVLMPMRI 385 + YV+MPMRI Sbjct: 357 ---------TDFKYVVMPMRI 368 >gi|171316344|ref|ZP_02905564.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5] gi|171098473|gb|EDT43275.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5] Length = 368 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|325528072|gb|EGD05284.1| DNA polymerase III subunit beta [Burkholderia sp. TJI49] Length = 368 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|254251051|ref|ZP_04944369.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158] gi|124893660|gb|EAY67540.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158] Length = 368 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ ++ L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|107024099|ref|YP_622426.1| DNA polymerase III subunit beta [Burkholderia cenocepacia AU 1054] gi|116688026|ref|YP_833649.1| DNA polymerase III subunit beta [Burkholderia cenocepacia HI2424] gi|170731358|ref|YP_001763305.1| DNA polymerase III subunit beta [Burkholderia cenocepacia MC0-3] gi|206558824|ref|YP_002229584.1| DNA polymerase III subunit beta [Burkholderia cenocepacia J2315] gi|105894288|gb|ABF77453.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia AU 1054] gi|116646115|gb|ABK06756.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia HI2424] gi|169814600|gb|ACA89183.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia MC0-3] gi|198034861|emb|CAR50733.1| DNA polymerase III, beta chain [Burkholderia cenocepacia J2315] Length = 368 Score = 343 bits (881), Expect = 2e-92, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQIATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|134294130|ref|YP_001117865.1| DNA polymerase III subunit beta [Burkholderia vietnamiensis G4] gi|134137287|gb|ABO53030.1| DNA polymerase III, beta subunit [Burkholderia vietnamiensis G4] Length = 368 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFAASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKIEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGGVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|296446087|ref|ZP_06888036.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] gi|296256446|gb|EFH03524.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b] Length = 371 Score = 343 bits (881), Expect = 3e-92, Method: Composition-based stats. Identities = 143/387 (36%), Positives = 224/387 (57%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++R+ +L+ L RI E++ TIP+ H LL+ + G L I+A+ +IE + A Sbjct: 1 MKLTIDRAPLLKALETTRRIAEQRTTIPILSHALLETDHGRLCIRATDLDIETRILLDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VSA +L+D+ RKL + AQI+ E + ++ + G S F L + P FP Sbjct: 61 IAETGALAVSAAVLHDLTRKLPEKAQIT--LEGQEAGQLQMRSGRSRFKLSTLPADTFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 T E + F L ++ L ++ +T FA++TEE RYYLNG+FFH E+D + L VATDG Sbjct: 119 TTEHGFSADFALPAATLARMLGKTAFAISTEETRYYLNGVFFHHMEDDGRALLRMVATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ E + A A MP +IVPRKA EI R+L +++ ++++S +++ ++ +++S Sbjct: 179 HRLSRIETEAPAGAAAMPGVIVPRKACAEIERLLKGQEAEARLAVSANKLRFSLGDVTLS 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP+Y VIP NDK ++ T + A DRVS + S R +AVKLS + L ++ Sbjct: 239 TKLIDGTFPDYARVIPQGNDKRATLDRTAMAAAADRVSTIHSERGRAVKLSFDASALTLS 298 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V NPDMG+A + M Y+ P++I FN +YL E + + D V RL + Sbjct: 299 VTNPDMGEARDEMEADYDSSPIEIGFNSRYLAEALQVLEG-----DSAVIRLADPGAPTL 353 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + VLMPMR+ Sbjct: 354 FQSA---------TQPDLLIVLMPMRV 371 >gi|152980594|ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille] gi|151280671|gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille] Length = 368 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ +R +L L I+ER++T+P+ ++L++ + + ++ E++IT Sbjct: 1 MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 S + S TV+A L DI+R L D +S N+ + + G S F LQ+ EF Sbjct: 61 GSGNDVASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E Y L LK+L HF+MA ++IRYYLNG+ ++ ++ + AVATD Sbjct: 118 PTVAQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKN--VIAVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA +V + + +I+PRK + E+ R+L D V + ++ +++ L + + Sbjct: 176 GHRLAFCQVATEQEFPRQE-VIIPRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP+Y V+P + L +++ R +IM+S + + V+ +S + + Sbjct: 235 ISKLVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N D +A+E + + Y +DI FN YLL++++N+ D + L +NSS Sbjct: 295 SSTNADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DSINIALGDANSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 350 LITVPDNP---------DFKYVVMPMRI 368 >gi|134093296|ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans] gi|133737199|emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans] Length = 368 Score = 343 bits (880), Expect = 3e-92, Method: Composition-based stats. Identities = 115/388 (29%), Positives = 202/388 (52%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ +R +L L I+ER++T+P+ ++L++ + + ++ E++IT Sbjct: 1 MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 S + S TV+A L DI+R L D +S N+ + + G S F LQ+ EF Sbjct: 61 GSGNEIASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E Y L LK+L HF+MA ++IRYYLNG+ ++ ++ + AVATD Sbjct: 118 PTVAQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKN--VIAVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA +V + A+ +I+PRK + E+ R+L D V + ++ S++ L + + Sbjct: 176 GHRLAFCQVATEQEFARQE-VIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP+Y V+P + L +++ R +IM+S + + V+ +S + + Sbjct: 235 ISKLVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N D +A+E + + Y +DI FN YLL++++N+ D + L +NSS Sbjct: 295 SSTNADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DNINIALGDANSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 350 LITVPDNP---------DFKYVVMPMRI 368 >gi|167589704|ref|ZP_02382092.1| DNA polymerase III subunit beta [Burkholderia ubonensis Bu] Length = 368 Score = 342 bits (879), Expect = 3e-92, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRADF 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGNDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKIEGGAFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|239813021|ref|YP_002941931.1| DNA polymerase III, subunit beta [Variovorax paradoxus S110] gi|239799598|gb|ACS16665.1| DNA polymerase III, beta subunit [Variovorax paradoxus S110] Length = 368 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 196/385 (50%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L L I+ER++T+P+ +VL++ G L++ S EI+I D Sbjct: 4 LKATQDKVLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + T+ A L DI+R + +S +++ + G S F LQS P +FP Sbjct: 64 EGNFTTTIGARKLIDILRTMPADQTVSLES---SASKLVLKGGKSRFTLQSLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + LK+L+ + FAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + ++ + +I+PRK V E+ R+LS + ++++ + ++ + + + Sbjct: 179 LAFSSATLDVEVPRQE-VILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A + +++ Y ++I FN YL++ + N+ D V L SNSS + Sbjct: 298 NAEQEEAQDELDIDYGGDAIEIGFNVTYLIDALSNMD-----QDMVKLDLADSNSSALLT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + YV+MPMRI Sbjct: 353 IPEN---------ASFKYVVMPMRI 368 >gi|78064660|ref|YP_367429.1| DNA polymerase III subunit beta [Burkholderia sp. 383] gi|115350058|ref|YP_771897.1| DNA polymerase III subunit beta [Burkholderia ambifaria AMMD] gi|170697755|ref|ZP_02888842.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10] gi|172059069|ref|YP_001806721.1| DNA polymerase III subunit beta [Burkholderia ambifaria MC40-6] gi|77965405|gb|ABB06785.1| DNA polymerase III, beta subunit [Burkholderia sp. 383] gi|115280046|gb|ABI85563.1| DNA polymerase III, beta subunit [Burkholderia ambifaria AMMD] gi|170137370|gb|EDT05611.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10] gi|171991586|gb|ACB62505.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MC40-6] Length = 368 Score = 342 bits (879), Expect = 4e-92, Method: Composition-based stats. Identities = 107/388 (27%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + + +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + YV+MPMRI Sbjct: 350 LITVPENEE---------FKYVVMPMRI 368 >gi|149925375|ref|ZP_01913639.1| DNA polymerase III subunit beta [Limnobacter sp. MED105] gi|149825492|gb|EDM84700.1| DNA polymerase III subunit beta [Limnobacter sp. MED105] Length = 368 Score = 342 bits (878), Expect = 5e-92, Method: Composition-based stats. Identities = 122/388 (31%), Positives = 208/388 (53%), Gaps = 23/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++ L I+ER+NT+PV ++LL+ GLL + +S E++I + Sbjct: 1 MELIHSSRDALVRKLQIVSNIVERRNTLPVLANILLKKQGGLLTLLSSDIEMQIETSAEV 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + TV+A DI+R L + + + + G ++++ S F LQ+ P +F Sbjct: 61 GAGGEDTATTVAARKFLDILRSLPEDSDVMVKLD---GKKMSVQAKKSRFALQTLPAEDF 117 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P +E E+V L +LKNL+ HF+MA +++RYYLNG+ I E + AVATD Sbjct: 118 PLVQEPKEWVTQISLPQKMLKNLLGMVHFSMAQQDLRYYLNGVLLVI--ESACVRAVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA A+ AK +I+PRK V E+ R+L+ D +V + L+ ++ +++ Sbjct: 176 GHRLAYADAPGQGGTAK-HEVIIPRKTVLELSRLLNDTDDTVTIDLASNQAKFTFSDITL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP+YQ VIP ++ + + L ++ R SI++S + + ++ L ++ L + Sbjct: 235 ITKLVEGKFPDYQRVIPKTHQHHVVIARDALLHSLQRASILTSDKFRGIRWVLGANGLTI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N D +A + M V Y +D+ FN YLL++++N+ S + V F L NSS Sbjct: 295 VANNSDQEEARDEMEVEYQGPEIDVGFNVNYLLDVLNNLKS-----ETVQFTLQDGNSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD + YV+MPMRI Sbjct: 350 LVTTPGKD---------DFKYVVMPMRI 368 >gi|161523182|ref|YP_001578194.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC 17616] gi|189348957|ref|YP_001944585.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC 17616] gi|221201813|ref|ZP_03574850.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M] gi|221207681|ref|ZP_03580689.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2] gi|221214573|ref|ZP_03587543.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1] gi|56798247|dbj|BAD82890.1| DnaN [Burkholderia multivorans] gi|160340611|gb|ABX13697.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC 17616] gi|189332979|dbj|BAG42049.1| DNA polymerase III, beta chain [Burkholderia multivorans ATCC 17616] gi|221165463|gb|EED97939.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1] gi|221172527|gb|EEE04966.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2] gi|221178233|gb|EEE10643.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M] Length = 368 Score = 342 bits (877), Expect = 7e-92, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGSDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I +IVPRK + E+ R+L D +V + +++++ + + Sbjct: 175 GHRLAFSSMKIDGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ ++ L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368 >gi|310817862|ref|YP_003950220.1| DNA polymerase III subunit beta [Stigmatella aurantiaca DW4/3-1] gi|309390934|gb|ADO68393.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1] Length = 368 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 204/386 (52%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + ++ + L A I+ERK T+P+ +VL+ A + + A +I + PA Sbjct: 1 MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T++A ++DIV+ L D N V+I+ G ++F + E+P Sbjct: 61 VSKPGAVTLNAKYIFDIVQNLPDAQVTLKKLANNY---VDIASGSAHFKIVGMAAEEYPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +EE +++ + L ++++T FA++++E RY LNG++F + K+ VATDGHR Sbjct: 118 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFEP-QSGGKVRMVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ E ++ +I+PRK + E+ R+L D+ + +E+ L+M + Sbjct: 177 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG+FP YQ VIP +K + V+ + + R++++S+ + AV++ L +KL +T Sbjct: 237 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NPD+G+A +++ + Y + I FN +YL++++ + DEV F L +S + Sbjct: 297 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V+MPMR+ Sbjct: 352 HAP---------GDRSFTAVVMPMRV 368 >gi|118594215|ref|ZP_01551562.1| DNA polymerase III, beta subunit [Methylophilales bacterium HTCC2181] gi|118439993|gb|EAV46620.1| DNA polymerase III, beta subunit [Methylophilales bacterium HTCC2181] Length = 367 Score = 341 bits (876), Expect = 8e-92, Method: Composition-based stats. Identities = 111/387 (28%), Positives = 217/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 M I + R +L+ L + I+E+++ +P+ ++LL+ ++ L+ A+ E++IT Sbjct: 1 MNIKINRDVLLKPLSNVSGIVEKRHALPILSNLLLEGQDNNSLKFTATDLEVQITLNAKT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V SIT++A L+DI R L +G+ I E ++V + G S F LQ+ P ++P Sbjct: 61 EVPTDFSITIAARKLFDITRSLPEGSTIDLQVEE---SKVVLKAGKSKFNLQTLPAKDYP 117 Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 K EE + + LK ++++ F+MA ++IRYYLNG+ F ++ + KL V TDG Sbjct: 118 VMKLSEEEKKLIRVPQNQLKAILKQVDFSMAQQDIRYYLNGLLFEVDGK--KLNIVGTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ +++ K I+PRK + E++++L V++ L++++ + + + +++ Sbjct: 176 HRLSFTSLELKEPQEK-FQTIIPRKTILELIKLLDETAEEVEIQLTKNQAYFSFQEINLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP ++ + ++ T L ++ R SI+S+ + + +++ + +L + Sbjct: 235 SKVIDGKFPDYHRVIPVGHENKFDIDRTQLLLSMQRASILSNEKYRGIRMVIEKSQLKLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +N + +A E +++ Y+ +DI FN YL++++ NI + +++ F + S+SS Sbjct: 295 SNNSEQEQAEEELDITYDGPSIDIGFNVTYLIDVLTNIQA-----EKLSFAFNDSSSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 350 ITIPKND---------DYKYVVMPMRI 367 >gi|121607000|ref|YP_984329.1| DNA polymerase III subunit beta [Polaromonas naphthalenivorans CJ2] gi|120595969|gb|ABM39408.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans CJ2] Length = 368 Score = 341 bits (876), Expect = 9e-92, Method: Composition-based stats. Identities = 111/385 (28%), Positives = 200/385 (51%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKFLGVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTTAELDGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L D++R + +S ++ + G S F LQ+ P +FP Sbjct: 64 EGDFTTTVGARKLIDVLRSMPSDQTVSLES---AQNKLILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + VLK L+ + FAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAASFGPVFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + ++ K +I+PRK V E+ R+LS K+ ++++ + ++ + E + + Sbjct: 179 LAFSSATLDVEVPKQE-VILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHKNIITLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y+ ++I FN YL++ ++N++ D V L SNSS + Sbjct: 298 NAEQEEAVDELDIDYDGDAIEIGFNVTYLIDALNNMN-----QDMVKIELADSNSSALLT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + YV+MPMRI Sbjct: 353 IPDNAA---------FKYVVMPMRI 368 >gi|171913560|ref|ZP_02929030.1| DNA polymerase III subunit beta [Verrucomicrobium spinosum DSM 4136] Length = 365 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 114/385 (29%), Positives = 190/385 (49%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + L L ++ + T+P+ +VL++A +G L+ + ++ I+G + A Sbjct: 1 MKFSISKEAFLTALQQVQHVVSTRTTLPILSNVLIKAGNGQLQFVTTDLDVGISGTVAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ T+ A L I+R+L E + +I G S F + EFP Sbjct: 61 VEEAGATTLPARKLVSIIRELPSDEVEVTVDERNVA---HIRSGPSFFKVMGLAADEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F+L VLK+ + +T +A++T+E RY LNGI E L VATDG R Sbjct: 118 LPTFSDAREFKLEQRVLKDCLRKTSYAISTDETRYVLNGILCSFKEN--MLTMVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ + II+P KAV EI R+L + V + + +I ++ ++ + Sbjct: 176 LAMVEQELEFPQSNEVDIIIPTKAVNEIQRLLED-EGEVTLKVGSGQIAFDLGDFFLASK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G +PNY+ VIP + + ++ L + + R S++ S + +VKL L+ D L + + Sbjct: 235 LIEGNYPNYRQVIPGEARERIALDREPLLRTLGRTSLLLSDKSNSVKLHLTKDNLEVVAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 PD+G+A ES+ + Y M I FN ++ + + N+ V DEV L S +R Sbjct: 295 APDVGEARESVAINYKGAEMTIAFNPEFFMAPLRNL-----VSDEVYLHLIDEISPGVLR 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N YVLMPMR+ Sbjct: 350 S-----------GTNFLYVLMPMRV 363 >gi|319790696|ref|YP_004152336.1| DNA polymerase iii, beta subunit [Variovorax paradoxus EPS] gi|315593159|gb|ADU34225.1| DNA polymerase III, beta subunit [Variovorax paradoxus EPS] Length = 368 Score = 341 bits (875), Expect = 1e-91, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 196/385 (50%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L L I+ER++T+P+ +VL++ G L++ S EI+I D Sbjct: 4 LKATQDKVLAALQSVSGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + T+ A L DI+R + +S +++ + G S F LQS P +FP Sbjct: 64 EGNFTTTIGARKLIDILRTMPADQTVSLES---SASKLVLKGGKSRFTLQSLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + LK+L+ + FAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + ++ + +I+PRK V E+ R+LS + ++++ + ++ + + + Sbjct: 179 LAFSSAMLDVEVPRQE-VILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A + +++ Y ++I FN YL++ + N+ D V L SNSS + Sbjct: 298 NAEQEEAQDELDIDYGGDAIEIGFNVTYLIDALSNMD-----QDMVKLDLADSNSSALLT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + YV+MPMRI Sbjct: 353 IPEN---------ASFKYVVMPMRI 368 >gi|226225408|ref|YP_002759514.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27] gi|226088599|dbj|BAH37044.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27] Length = 370 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 195/385 (50%), Gaps = 17/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R + E L + K T+PV ++L++ D + A+ +I ++ + A Sbjct: 1 MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVSAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+IT+ A L +I R+L + V + G S F L P EFP+ Sbjct: 61 VETPGAITIPAKKLGEIARELPPSPVKISASGEQ---RVTLECGRSKFKLLGLPRDEFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S+ + S L+ L+ T FA++ EE R LNG+ + + EE ++ VAT+GHR Sbjct: 118 FPSVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREE--RMRMVATNGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E+ + A A +IVP KA+ +I R+ +++ ++++ ++ + S+ R Sbjct: 176 LAKMELPVEASSAPPGDLIVPPKALEQIRRLFPAEEE-LEIARGDNHLGFRSPFTSVFTR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G +PNY+ VIP ND+ + L A+ R+S+++S + +K+S +S L +V Sbjct: 235 LVEGPYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKFSVT 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 PD+G+A + + + Y +DI FN YLLEI+ + + ++V + + I Sbjct: 295 TPDLGEASDELPINYTGDQLDIGFNATYLLEILRFMPT-----EQVRLTFKAPERAATIE 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + D+ ++MP+R+ Sbjct: 350 PE------GWDDPAKYLCLVMPLRL 368 >gi|88813025|ref|ZP_01128267.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231] gi|88789658|gb|EAR20783.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231] Length = 366 Score = 341 bits (874), Expect = 2e-91, Method: Composition-based stats. Identities = 128/385 (33%), Positives = 205/385 (53%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ VER+ +L+ L ++ER+ T+P+ ++LL A + L I A+ E+EI A Sbjct: 1 MEFDVERTALLKALQSIIGVVERRQTLPILANILLDAREQRLAITATDLEVEIQAHAQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G T+ A L DIVR L + A I ++ + + S F L + P +FP+ Sbjct: 61 LSQAGETTLPARKLMDIVRNLPEHADIHVSTSHD---RIALQLPHSRFTLATLPTKDFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E EL S L+ L++RT FAMA +++RYYLNG+ + L+ AVATDGHR Sbjct: 118 VEEIGQTQDLELTQSHLRWLIDRTGFAMALQDVRYYLNGLLLELEPYCLR--AVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AEV + + +IVPRK + E+LR+L+ D +++ L ++ I + + + + Sbjct: 176 LALAEVVTELPLTETKQVIVPRKGIQELLRLLTDSDEPLRLELGDNHIRVTWPEVRFTTK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+DG+FP+YQ VIP N L+V LRQA+ R +I+S+ + V+ L L + + Sbjct: 236 LLDGQFPSYQRVIPKQNGGCLQVERHTLRQALIRAAILSNEHLHGVRFILGGTSLRICSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP +A E + Y+ +I FN YLL+ + I + V L ++NSS +R Sbjct: 296 NPAQEEAEEELTAAYDGEAFEIGFNASYLLDALAAIE-----ESTVEIFLTNANSSALLR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G + YV+MP+R+ Sbjct: 351 GAGNE---------RCRYVVMPLRL 366 >gi|108761971|ref|YP_628517.1| DNA polymerase III subunit beta [Myxococcus xanthus DK 1622] gi|108465851|gb|ABF91036.1| DNA polymerase III, beta subunit [Myxococcus xanthus DK 1622] Length = 368 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 204/386 (52%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + ++ + L A I+ERK T+P+ +VL+ AN G + + A +I + PA Sbjct: 1 MEFRIAADELKKALYRAQGIVERKTTMPILANVLVTANKGGITVTAFDLDIGVVSEHPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T+SA ++DIV+ L D N V+IS G ++F + E+P Sbjct: 61 VIKTGAVTLSAKYVFDIVQNLPDAQVTLKKLANNY---VDISSGSAHFKIVGMAAEEYPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +EE ++ + L ++++T FA++++E RY LNG+FF + K+ VATDGHR Sbjct: 118 LPKEENAPLVQVGGNTLLEMIKKTQFAISSDETRYILNGVFFEP-QSTGKVRMVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ E ++ +I+PRK + E+ R+L D+ + +E+ L+M + Sbjct: 177 LALVERELPGDFKLKSGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG+FP YQ VIP +K + V L +++ R++++S+ + AV++ L ++L +T Sbjct: 237 RLIDGQFPEYQRVIPKEGEKIVLVPKVRLLESLKRIALLSADKSNAVRIGLEENQLIITA 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 NPD+G+A + + + Y + I FN +YL++++ + DEV F L +S + Sbjct: 297 SNPDLGEAKDVLELAYRGNGITIGFNARYLMDVLAVTET-----DEVSFELGDEHSPGVL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V+MPMR+ Sbjct: 352 HAP---------GDRSFTAVVMPMRV 368 >gi|237749315|ref|ZP_04579795.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13] gi|229380677|gb|EEO30768.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13] Length = 368 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 112/381 (29%), Positives = 204/381 (53%), Gaps = 22/381 (5%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCG 65 R ++L L I+ER++T+P+ ++L++ + ++ EI+I + + Sbjct: 8 RDNLLRPLQIVSGIVERRHTLPILANILIRKEGEAVSFLSTDTEIQIVTHAEIGTNEENT 67 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124 + TV+A L DI+R L D + I+ + ++ + + G S F LQ+ P +FP + Sbjct: 68 TTTVAARKLLDILRALPDTSDIAISQNDK---RLVVQAGKSRFSLQTLPADDFPIVSQPA 124 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 EY S ++ LKNL+ +F+MA ++IRYYLNG+ ++ K+ AVATDGHRLA Sbjct: 125 EYETSVTVSQKALKNLLGMVYFSMAQQDIRYYLNGLLLQVDGN--KMTAVATDGHRLAFC 182 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 +++ + +K +I+PRK + E+ R+L D V++ S ++ + + +L++G Sbjct: 183 QMETDQEFSKN-DVIIPRKTILELQRLLEDSDEPVRIDFSGGQVRFVFGDVELISKLVEG 241 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304 +FP+Y VIP + ++ L++A+ R +IM+S + + ++ L+ L ++ N D Sbjct: 242 KFPDYTRVIPKGYKNKFTLSREQLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 +AIE + + Y +DI FN YLL+++ N+ +++V L +NSS + D Sbjct: 302 EEAIEEIELDYGGDSIDIGFNVTYLLDVLGNLK-----NEQVSVELGDANSSALVSVPDN 356 Query: 365 DSKNNKDNKVNAFYVLMPMRI 385 + YV+MPMRI Sbjct: 357 ---------SDFKYVVMPMRI 368 >gi|238025686|ref|YP_002909917.1| DNA polymerase III subunit beta [Burkholderia glumae BGR1] gi|237874880|gb|ACR27213.1| DNA polymerase III, beta subunit [Burkholderia glumae BGR1] Length = 368 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 106/388 (27%), Positives = 196/388 (50%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGEQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I +IVPRK + E+ R+L D V + +++++ + + Sbjct: 175 GHRLAYSSMKIDGGTFPRQEVIVPRKTILELQRLLEDIDDVVNIDIAQTQAKFTFGQVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ + + L ++SS Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VENIQVSLGDASSSA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 350 LITIPEIDE---------FKYVVMPMRI 368 >gi|148260438|ref|YP_001234565.1| DNA polymerase III subunit beta [Acidiphilium cryptum JF-5] gi|146402119|gb|ABQ30646.1| DNA polymerase III, beta subunit [Acidiphilium cryptum JF-5] Length = 374 Score = 340 bits (873), Expect = 2e-91, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H ++E++NTIP+ +VLL +G L I A+ EI + + A+ Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+T A LY+IVR+ D A+I + + G L P EFP Sbjct: 61 TMRDGSVTAPAATLYEIVRRQPDNAEIELDHPGGDAP-LALRAGRYATKLVVLPTDEFPK 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + F + + L+ L++RT FA++TEE RYYLNGI+ H E + L AVATDG Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E + A MP +IVPRK V EI ++L V ++LSE+RI ++++ M+ Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+Y VIP NDK LRV + AV RVS ++S R + VKLS+ D L ++ Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +PD G A E ++ V Y P++I F +YL ++ + I +V F + Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KVEFCFADGAA 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A +VLMPMR+ Sbjct: 354 PTLVRAAGDES---------AIFVLMPMRV 374 >gi|53717713|ref|YP_106699.1| DNA polymerase III subunit beta [Burkholderia pseudomallei K96243] gi|53724902|ref|YP_101863.1| DNA polymerase III subunit beta [Burkholderia mallei ATCC 23344] gi|67642368|ref|ZP_00441125.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4] gi|76811898|ref|YP_331716.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1710b] gi|121599744|ref|YP_994143.1| DNA polymerase III subunit beta [Burkholderia mallei SAVP1] gi|124384769|ref|YP_001028200.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10229] gi|126438733|ref|YP_001057143.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 668] gi|126448071|ref|YP_001079585.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10247] gi|134281596|ref|ZP_01768304.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305] gi|167001181|ref|ZP_02266980.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20] gi|167717461|ref|ZP_02400697.1| DNA polymerase III subunit beta [Burkholderia pseudomallei DM98] gi|167736496|ref|ZP_02409270.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 14] gi|167813574|ref|ZP_02445254.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 91] gi|167822115|ref|ZP_02453586.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 9] gi|167843720|ref|ZP_02469228.1| DNA polymerase III subunit beta [Burkholderia pseudomallei B7210] gi|167892199|ref|ZP_02479601.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 7894] gi|167900711|ref|ZP_02487916.1| DNA polymerase III subunit beta [Burkholderia pseudomallei NCTC 13177] gi|167908928|ref|ZP_02496019.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 112] gi|167916969|ref|ZP_02504060.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BCC215] gi|217423948|ref|ZP_03455448.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576] gi|226193089|ref|ZP_03788699.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237814479|ref|YP_002898930.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei MSHR346] gi|254175303|ref|ZP_04881964.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399] gi|254184147|ref|ZP_04890738.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655] gi|254186618|ref|ZP_04893135.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|254194524|ref|ZP_04900955.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13] gi|254201968|ref|ZP_04908332.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH] gi|254207300|ref|ZP_04913651.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU] gi|254259557|ref|ZP_04950611.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a] gi|254298587|ref|ZP_04966038.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e] gi|254359609|ref|ZP_04975880.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280] gi|52208127|emb|CAH34057.1| DNA polymerase III, beta chain [Burkholderia pseudomallei K96243] gi|52428325|gb|AAU48918.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 23344] gi|76581351|gb|ABA50826.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710b] gi|121228554|gb|ABM51072.1| DNA polymerase III, beta subunit [Burkholderia mallei SAVP1] gi|124292789|gb|ABN02058.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10229] gi|126218226|gb|ABN81732.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 668] gi|126240941|gb|ABO04034.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10247] gi|134247263|gb|EBA47349.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305] gi|147747862|gb|EDK54938.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH] gi|147752842|gb|EDK59908.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU] gi|148028823|gb|EDK86755.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280] gi|157808569|gb|EDO85739.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e] gi|157934303|gb|EDO89973.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur 52237] gi|160696348|gb|EDP86318.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399] gi|169651274|gb|EDS83967.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13] gi|184214679|gb|EDU11722.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655] gi|217393011|gb|EEC33033.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576] gi|225934689|gb|EEH30666.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pakistan 9] gi|237506469|gb|ACQ98787.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei MSHR346] gi|238523507|gb|EEP86945.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4] gi|243063008|gb|EES45194.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20] gi|254218246|gb|EET07630.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a] Length = 367 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 175 GHRLAFSSMKIEGSFGRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367 >gi|326403632|ref|YP_004283714.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301] gi|325050494|dbj|BAJ80832.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301] Length = 374 Score = 339 bits (871), Expect = 3e-91, Method: Composition-based stats. Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H ++E++NTIP+ +VLL +G L I A+ EI + + A+ Sbjct: 1 MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+T A LY+IVR+ D A+I + + G L P EFP Sbjct: 61 TMRDGSVTAPAATLYEIVRRQPDNAEIELDHPGGDAP-LALRAGRYATKLVVLPTDEFPK 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + F + + L+ L++RT FA++TEE RYYLNGI+ H E + L AVATDG Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHSAESEGVPVLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E + A MP +IVPRK V EI ++L V ++LSE+RI ++++ M+ Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+Y VIP NDK LRV + AV RVS ++S R + VKLS+ D L ++ Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +PD G A E ++ V Y P++I F +YL ++ + I +V F + Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KVEFCFADGAA 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +S A +VLMPMR+ Sbjct: 354 PTLVRAAGDES---------AIFVLMPMRV 374 >gi|322417547|ref|YP_004196770.1| DNA polymerase III subunit beta [Geobacter sp. M18] gi|320123934|gb|ADW11494.1| DNA polymerase III, beta subunit [Geobacter sp. M18] Length = 372 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 110/389 (28%), Positives = 206/389 (52%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ L I+E++NT+P+ + LL+ + L I A+ E+ + + P Sbjct: 1 MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLYITATDLEVGMKSSYPTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA LY+IV+++ D + K+N+ V I+ G + F + EFP Sbjct: 61 VIREGKITVSAKKLYEIVKEMPDEEILFSTKDND---WVEITCGKARFNIVGLSSEEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 + + + +L +++E+T +A+ +E +Y LNG+F +E+ L VATDG Sbjct: 118 FPKVKEENFLVFKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGGNVLKMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL+VA+ I I S II P+K + E+ +++ +D + + ++ + + Sbjct: 178 HRLSVAQKAITGNITAELSKGIIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIKKGNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDGEFP+Y VIP +ND+ +++N ++ R+SI+SS + + VK+ ++ + + Sbjct: 238 VVMRLIDGEFPDYTKVIPVANDRIVQINRDKFLHSLKRMSILSSEKFKGVKIDVNPELVI 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G+A E + + Y+ + FN KYL++++ + EV +L S Sbjct: 298 ISSSNPELGEAREEIEIDYDGNGISARFNAKYLIDVLSVMEQR-----EVELKLKDELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ D + V+MPMR+ Sbjct: 353 VIMKAADSEE---------FLAVIMPMRL 372 >gi|91785915|ref|YP_546867.1| DNA polymerase III subunit beta [Polaromonas sp. JS666] gi|91695140|gb|ABE41969.1| DNA polymerase III, beta subunit [Polaromonas sp. JS666] Length = 368 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 113/385 (29%), Positives = 201/385 (52%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I + D Sbjct: 4 LKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTSADLDGD 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI+R + +S +++ + G S F LQ+ P +FP Sbjct: 64 AGNFTTTVGARKLIDILRSMPSDQTVSLES---AQSKLILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + SF + VLK L+ + FAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAANFGPSFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + ++ K +I+PRK V E+ R+LS K+ ++++ + ++ + E + + Sbjct: 179 LAFSSATLDVEVPKQE-VILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHKNIITLGRVPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y ++I FN YL++ + N+ D V L SNSS + Sbjct: 298 NAEQEEAVDELDIDYGGDAIEIGFNVTYLIDALANME-----QDMVKIELADSNSSALLT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + YV+MPMRI Sbjct: 353 IPDDAA---------FKYVVMPMRI 368 >gi|83720585|ref|YP_443734.1| DNA polymerase III subunit beta [Burkholderia thailandensis E264] gi|167582969|ref|ZP_02375843.1| DNA polymerase III subunit beta [Burkholderia thailandensis TXDOH] gi|167620900|ref|ZP_02389531.1| DNA polymerase III subunit beta [Burkholderia thailandensis Bt4] gi|83654410|gb|ABC38473.1| DNA polymerase III, beta subunit [Burkholderia thailandensis E264] Length = 367 Score = 339 bits (870), Expect = 4e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 201/388 (51%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I ++ +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 175 GHRLAFSSMKIEGSFSRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367 >gi|167834928|ref|ZP_02461811.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43] Length = 367 Score = 339 bits (870), Expect = 5e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++ S + + L+ +FAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 175 GHRLAFSSMKIEGAFGRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367 >gi|147676337|ref|YP_001210552.1| DNA polymerase sliding clamp subunit [Pelotomaculum thermopropionicum SI] gi|146272434|dbj|BAF58183.1| DNA polymerase sliding clamp subunit [Pelotomaculum thermopropionicum SI] Length = 369 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 184/386 (47%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +R ++ L R + KN +P+ + +A D L + A+ E+ I +I A Sbjct: 1 MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSITAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ + A + +++RKL D + ++ V I + S + F E+P Sbjct: 61 VLQPGAAVLPARYITELIRKLPDQP--FLIESDQDTGHVTIRYASSEASMNCFQADEYPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F + + ++ ++ + FA+ ++E R G+ F + E ++ VATD HR Sbjct: 119 FPVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREG--QVQVVATDTHR 176 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA + D+ +I+ ++I+P +++ E+ RI +D VKV+ +ES++ + S+ Sbjct: 177 LAWRKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLIT 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI G FPNY+ VIP +R +L +A +R S++S AV+L + + +T Sbjct: 237 RLIGGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTA 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G+ E + V P+ I FN +YL +++ + S +E+ S I Sbjct: 297 -NSEVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGS-----EEIDIEFTGPLSPGVI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + +L+P+R+ Sbjct: 351 RPV---------GSTDYLSLLLPVRL 367 >gi|153002881|ref|YP_001377206.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. Fw109-5] gi|152026454|gb|ABS24222.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. Fw109-5] Length = 376 Score = 339 bits (869), Expect = 6e-91, Method: Composition-based stats. Identities = 122/393 (31%), Positives = 201/393 (51%), Gaps = 25/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M++ + +++ + LG + I+E+K+T+P+ HVLL+A G L + A+ ++ ++ Sbjct: 1 MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V G++ VSA LY+IVR L + N + + G S F + P +F Sbjct: 61 CEVLKEGALAVSARHLYEIVRALPEQQVTLKRAHNNY---LEVRSGPSEFRIVGLPAEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E V ++ L +++ERT FA++ +E RY LNG++F E L+L VATDG Sbjct: 118 PALPRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRL--VATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS------KDSSVKVSLSESRIHLNI 232 HRL+++E I +I+P+K + E+ ++L K+ E+ Sbjct: 176 HRLSLSERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRR 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + +S+RLI+G FP+Y+ VIP +K LR+ + + RVS++SS + AVKL L Sbjct: 236 PGVILSMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQ 295 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L + NPD+G+A E + V Y P+ I FN +YL++++ + S EV L Sbjct: 296 GTLKVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKSA-----EVQLELAD 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +RG D+ V+MPMRI Sbjct: 351 DLSPGVMRGGDE-------KDAGFTAVVMPMRI 376 >gi|197116404|ref|YP_002136831.1| DNA polymerase III subunit beta [Geobacter bemidjiensis Bem] gi|197085764|gb|ACH37035.1| DNA polymerase III, beta subunit [Geobacter bemidjiensis Bem] Length = 372 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 206/389 (52%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ L I+E++NT+P+ + LL+ + L I A+ E+ + + P + Sbjct: 1 MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA LY+IV+++ D K+N+ V I+ G + F + EFP Sbjct: 61 VIREGKITVSAKKLYEIVKEMPDEEIHFTTKDND---WVEITCGKARFNIVGLSSEEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + + +L +++E+T +A+ +E +Y LNG+F +E+ + L VATDG Sbjct: 118 FPKVKEESFLVFKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENVLKMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL+V++ I I S +I P+K + E+ +++ +D + + ++ + + Sbjct: 178 HRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIKKGNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDGEFP+Y VIP SND+ +++N ++ R++I+SS + + VK+ ++ + + Sbjct: 238 VVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVNPELVI 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G+A E + V Y + FN KYL++++ + EV +L S Sbjct: 298 ISSSNPELGEAREEIEVQYEGNNISARFNAKYLIDVLSVMEQR-----EVELKLKDELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ ++ V+MPMR+ Sbjct: 353 VIMKAAAEEE---------FLAVIMPMRL 372 >gi|307728078|ref|YP_003905302.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1003] gi|307582613|gb|ADN56011.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1003] Length = 367 Score = 338 bits (868), Expect = 7e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGETVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I A+ +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|296115230|ref|ZP_06833871.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC 23769] gi|295978331|gb|EFG85068.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC 23769] Length = 374 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 138/390 (35%), Positives = 215/390 (55%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +R+ +L+ L H + E++NTIP+ +VL+ DGL+ + A+ EI + I A Sbjct: 1 MKLKADRATLLKALLHIQGVAEKRNTIPILANVLINVTDGLMTMTATDMEIAVVEGISAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++T A +L DIVR+L DGA + + + + G + L +FPS Sbjct: 61 TLRDGAVTAPAAVLCDIVRRLPDGAVVE-LDQAGGDAPLALRAGRFSTSLNVLDVDDFPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178 + F +AS L+ L++R+ FA++TEE RYYLNGI+FH+ E + L AVATDG Sbjct: 120 MMAGALPHDFTIASQALRGLIDRSRFAISTEETRYYLNGIYFHVAETPQGPMLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA E D+ A MP +I+PRK V E+ ++L + ++LS++RI + ++ ++ Sbjct: 180 HRLARVETDLPDGAAGMPGVIIPRKTVNELRKLLEEGPEHIGIALSDTRIQFTVGNVILT 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FP Y+ VIP NDK L V AV RV+ +S R + VKL+++ + L ++ Sbjct: 240 SKLIDGTFPEYERVIPTGNDKVLHVGKKIFSDAVSRVAAISQERSRPVKLAVTQNLLTLS 299 Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D G A E ++ V Y+ P++I F +YL +I D I V F S++ Sbjct: 300 AASQDQGTATEELDDTHVVYDASPIEIGFQARYLNDITDQIE------KNVEFAFSDSSA 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D + +A YVLMPMR+ Sbjct: 354 PTIVRDVD---------RPSALYVLMPMRV 374 >gi|323524379|ref|YP_004226532.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1001] gi|323381381|gb|ADX53472.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1001] Length = 367 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGESVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I A+ +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|167560989|ref|ZP_02353905.1| DNA polymerase III subunit beta [Burkholderia oklahomensis EO147] gi|167568253|ref|ZP_02361127.1| DNA polymerase III subunit beta [Burkholderia oklahomensis C6786] Length = 367 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLTLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ S + + L+ +FAMA ++IRYYLNG+ ++ + L AVATD Sbjct: 117 PTVAQAKDFGASLSVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDS--LMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 175 GHRLAFSSMKIEGAFPRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNSFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367 >gi|78484348|ref|YP_390273.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2] gi|78362634|gb|ABB40599.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2] Length = 368 Score = 338 bits (868), Expect = 8e-91, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 209/386 (54%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ R ++L++L ++E++ T+P+ ++L Q N L + AS EIE + Sbjct: 1 MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D S+T+ A L IVR L DG I + +S G S F L + P +FP Sbjct: 61 SSDGDFSVTLPAVKLISIVRSLPDGLTILLEFDE---MRCQLSAGRSRFKLSTLPADDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + SF +A LK ++ T FAMA++++R+YLNG+ F I+ + L++ VATDGH Sbjct: 118 TIDLTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRV--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ + + I+PRK V E+ +++ DS + SL+++ + + E + Sbjct: 176 RLSTCSTLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTC 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP++ V+P ND+ ++ + LR + R +I+S+ + + ++L+LS + L + Sbjct: 236 KLVDGRFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D ++ E M + YN M+I FN YLL++++++ ++ V + +NSS + Sbjct: 296 QNSDQDESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMH-----EEAVTLYMKDANSSCMV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + +V+MPMR+ Sbjct: 351 --------DTQNETCHCQHVIMPMRL 368 >gi|126451494|ref|YP_001064387.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1106a] gi|242316207|ref|ZP_04815223.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b] gi|126225136|gb|ABN88676.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106a] gi|242139446|gb|EES25848.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b] Length = 367 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 199/388 (51%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++ S + + L+ +FAMA ++IRYYLNG+ ++ + L AVATD Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDS--LMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I + +IVPRK + E+ R+L D +VK+ +++++ + + Sbjct: 175 GHRLAFSSMKIEGSFGRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP ++ + L++++ R +I++S + + V+ ++ +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D V L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367 >gi|121596426|ref|YP_988322.1| DNA polymerase III subunit beta [Acidovorax sp. JS42] gi|120608506|gb|ABM44246.1| DNA polymerase III, beta subunit [Acidovorax sp. JS42] Length = 368 Score = 338 bits (867), Expect = 9e-91, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 200/385 (51%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VLL+ +++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S +++ + G S F LQ+ P +FP Sbjct: 64 TGDFTTTVGARKLIDILKTMPSDQTVSLESN---QSKLILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + +F + VLK+L+ + FAMA ++IRYYLNGI F E L VATDGHR Sbjct: 121 QEAASFGPAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A + ++ K +I+PRK V E+ R+LS D ++++ + ++ + + + Sbjct: 179 LAFASAQLDVEVPKQE-VILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y ++I FN YL++ + N+ D V D L NSS + Sbjct: 298 NAEQEEAVDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + + YV+MPMRI Sbjct: 353 IPDNE---------HFKYVVMPMRI 368 >gi|332531210|ref|ZP_08407123.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624] gi|332039317|gb|EGI75730.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624] Length = 368 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 110/385 (28%), Positives = 197/385 (51%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +V+L+ + +++ S EI+I D Sbjct: 4 LKASQDKVLSVLQSVAGIVERRHTLPILANVMLRRSGNAVQLTTSDLEIQIRTVAEFEGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI+R L ++ ++ + G S F LQS P +FP Sbjct: 64 SGNFTTTVGARKLIDILRTLPSDQTVTLES---SQNKLVLKGGKSKFTLQSLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + LK L+ + F+MA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAANFGPKFSVPQKTLKELLGQVSFSMAVHDIRYYLNGILFVAEGQQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A + ++ K +I+PRK V E+ R+LS + ++++ + ++ + + + Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDNEGAIEMQFAGNQAKFSFGGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+L++ L + Sbjct: 238 LVEGKFPDYNRVIPKNHKNIIVLGRQPLLASLQRAAILTSDKFKGVRLNIEPGTLRIAST 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y+ ++I FN YL+E++ N+ + V L SNSS + Sbjct: 298 NAEQEEAVDELDIDYSGDSIEIGFNVTYLIEVLGNM-----TQEMVRVELSDSNSSALVT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D N YV+MPMRI Sbjct: 353 IPDN---------ANFKYVVMPMRI 368 >gi|134297883|ref|YP_001111379.1| DNA polymerase III subunit beta [Desulfotomaculum reducens MI-1] gi|134050583|gb|ABO48554.1| DNA polymerase III, beta subunit [Desulfotomaculum reducens MI-1] Length = 365 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 112/384 (29%), Positives = 195/384 (50%), Gaps = 21/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI R ++++ + A R + KN +P+ +LL A D L+++A+ E+ I +P + Sbjct: 1 MKIICTRQNLIQGVTTAQRAVSAKNPLPILSGILLTAKDNKLKLQATDLEMGIQCVVPCT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSI + A L +IVR+L D E+ GT V I +G S + F EFP+ Sbjct: 61 TQEEGSIVLPAKYLSEIVRRLPDSPI---QIESNQGTNVIIRYGQSEITINGFDAEEFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + S + LK + + FA ++E R G+ I L+L V TD HR Sbjct: 118 FPKPQSKNSLTIPEEELKEYLRQILFATLSDENRPVFTGVLMEILNGTLRL--VTTDTHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+ + + +II+P K + E+ R++ + D V +SL E++I +E + R Sbjct: 176 LAMREIK-DSSVDNDINIIIPGKTLNELTRVIGAADQQVTISLGENQIIFGMEDTLLISR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP + +R+ +L +A +R S+++ V Q ++L++ +K+ +T Sbjct: 235 LIEGQFPNYRQVIPQGHKTRIRLKTKDLLEASERASLLARVGTQIIRLNIEEEKIILTA- 293 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N ++G+ E + VY + I FN YL++ + I S D + F L S +R Sbjct: 294 NTEVGRIHEEVPVYLQGESLQISFNAMYLIDALRAIGS-----DNIYFDLSGPLSPGILR 348 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + D + +++P+R Sbjct: 349 PVEGD---------DYLSLILPVR 363 >gi|222109227|ref|YP_002551491.1| DNA polymerase iii subunit beta [Acidovorax ebreus TPSY] gi|221728671|gb|ACM31491.1| DNA polymerase III, beta subunit [Acidovorax ebreus TPSY] Length = 368 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 200/385 (51%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VLL+ +++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S +++ + G S F LQ+ P +FP Sbjct: 64 TGDFTTTVGARKLIDILKTMPADQTVSLESN---QSKLILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + +F + VLK+L+ + FAMA ++IRYYLNGI F E L VATDGHR Sbjct: 121 QEAASFGPAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A + ++ K +I+PRK V E+ R+LS D ++++ + ++ + + + Sbjct: 179 LAFASAQLDVEVPKQE-VILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y ++I FN YL++ + N+ D V D L NSS + Sbjct: 298 NAEQEEAVDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + + YV+MPMRI Sbjct: 353 IPDNE---------HFKYVVMPMRI 368 >gi|120608716|ref|YP_968394.1| DNA polymerase III subunit beta [Acidovorax citrulli AAC00-1] gi|120587180|gb|ABM30620.1| DNA polymerase III, beta subunit [Acidovorax citrulli AAC00-1] Length = 372 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 113/389 (29%), Positives = 198/389 (50%), Gaps = 26/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S + +++ + G S F LQS P +FP Sbjct: 64 TGDFTTTVGARKLIDILKTMPADQTVSLESQ---QSKLVLKGGKSRFTLQSLPAEDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + +F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHR Sbjct: 121 QESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + ++ K +I+PRK V E+ R+LS +++ + ++ + Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGME 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L Sbjct: 238 FVTKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLR 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A++ +++ Y ++I FN YL++ + N+ D V D L NSS Sbjct: 298 VASNNAEQEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVRVD-----LSDGNSS 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D N YV+MPMRI Sbjct: 353 ALMTIPEND---------NFKYVVMPMRI 372 >gi|86156432|ref|YP_463217.1| DNA polymerase III subunit beta [Anaeromyxobacter dehalogenans 2CP-C] gi|85772943|gb|ABC79780.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans 2CP-C] Length = 375 Score = 337 bits (866), Expect = 1e-90, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 208/392 (53%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M++ + ++ + LG + I+E+K+T+P+ HVLL+A L + A+ ++ ++ Sbjct: 1 MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VSA LY+IVR L + N + + G S F + P +FP Sbjct: 61 EVLKEGAVAVSARHLYEIVRALPEQTVTLKKAHNNY---LEVKSGPSEFRIVGLPAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V ++ ++L ++ERT FA++ +E RY LNG++F + L+L VATDGH Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDS--SVKVSLSESRIHLNIE 233 RL+++E + A +I+P+K + E+ ++L S + K+ E+ Sbjct: 176 RLSLSERTVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +RLI+G FP+Y+ VIP + +K +V + + R+S++SS + AVKL LS D Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRARFLETLRRISLLSSDKAHAVKLDLSKD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NPD+G+A E + V Y P+ I FN +Y++E++ + S+ EVVF L Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKSN-----EVVFELADD 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G ++ V+MPMRI Sbjct: 351 LSPGVLKGGEE-------ADQGFTAVVMPMRI 375 >gi|326314825|ref|YP_004232497.1| DNA polymerase III subunit beta [Acidovorax avenae subsp. avenae ATCC 19860] gi|323371661|gb|ADX43930.1| DNA polymerase III, beta subunit [Acidovorax avenae subsp. avenae ATCC 19860] Length = 372 Score = 337 bits (865), Expect = 2e-90, Method: Composition-based stats. Identities = 114/389 (29%), Positives = 197/389 (50%), Gaps = 26/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S + +++ + G S F LQS P +FP Sbjct: 64 TGDFTTTVGARKLIDILKTMPADQTVSLESQ---QSKLVLKGGKSRFTLQSLPAEDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHR Sbjct: 121 QESAAFGPVFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + ++ K +I+PRK V E+ R+LS +++ + ++ + Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGME 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L Sbjct: 238 FVTKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLR 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A++ +++ Y ++I FN YL++ + N+ D V D L NSS Sbjct: 298 VASNNAEQEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVKVD-----LSDGNSS 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D N YV+MPMRI Sbjct: 353 ALMTIPDND---------NFKYVVMPMRI 372 >gi|209515896|ref|ZP_03264758.1| DNA polymerase III, beta subunit [Burkholderia sp. H160] gi|209503744|gb|EEA03738.1| DNA polymerase III, beta subunit [Burkholderia sp. H160] Length = 367 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 110/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + +G + + + G S F LQ+ EF Sbjct: 61 GVGGDSVATTVAARKLLDILRAMPEGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I A+ +I+PRK + E+ R+L D +VK+ ++++++ + + Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTVKIDIAQTQVKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNKFLIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|170694068|ref|ZP_02885224.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M] gi|170141140|gb|EDT09312.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M] Length = 367 Score = 337 bits (864), Expect = 2e-90, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDTVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++Y + + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I A+ +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDTLQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|323703941|ref|ZP_08115571.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM 574] gi|323531099|gb|EGB21008.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM 574] Length = 365 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 115/385 (29%), Positives = 198/385 (51%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI R ++++ + A R + KN +P+ +L A + LE+ A+ E+ I IPA+ Sbjct: 1 MKIICTRQNLVQGVTTAQRGVSAKNPLPILSGILFIAKNNSLELHATDLEMGIQCTIPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSI + A L +IVR+L D QI ++N I +G S + + EFP Sbjct: 61 VQEEGSIVLPARYLGEIVRRLPDAPIQIDATQDNNA----IIRYGQSEITINGYDAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S + LK ++ + FA +T+E R G+ + L VATD H Sbjct: 117 VLPTPQGKGSLSIPEEDLKEILRQVLFATSTDENRPVFTGVLME--NNNGCLRLVATDTH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ E +I I + S+I+P KA+ E+ R++ + D +V +SL ++++ ++E + Sbjct: 175 RLALREENIGNDIEDI-SVIIPGKALNELARVIGAPDRNVTISLGDNQVIFSMEDTRLVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ VIP LR+ L ++V+R S+++ V Q V+L++ +K+ +T Sbjct: 234 RLIEGQFPNYRQVIPRGYKTRLRMRTKELLESVERASLLARVGSQIVRLAIEEEKVIITA 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G+ E + V+ + I FN YL++ + I SD + D L S + Sbjct: 294 -NTEVGRIHEEVPVFLDGETTAISFNAVYLIDALRAIGSDNIYLD-----LSGPLSPGIL 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 R ++D N +++P+R Sbjct: 348 RPVEED---------NYLSLVLPVR 363 >gi|197120423|ref|YP_002132374.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. K] gi|196170272|gb|ACG71245.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. K] Length = 375 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 209/392 (53%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M++ + ++ + LG + I+E+K+T+P+ HVLL+A L + A+ ++ ++ Sbjct: 1 MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VSA LY+IVR L + + N + + G S F + P +FP Sbjct: 61 EVVKEGAVAVSARHLYEIVRALPEQSVTLKKAHNNY---LEVKSGPSEFRIVGLPAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V ++ ++L ++ERT FA++ +E RY LNG++F + L+L VATDGH Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDS--SVKVSLSESRIHLNIE 233 RL+++E + A +I+P+K + E+ ++L S + K+ E+ Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +RLI+G FP+Y+ VIP + +K +V + + R+S++SS + AVKL LS D Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NPD+G+A E + V Y P+ I FN +Y++E++ + S+ EVVF L Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKSN-----EVVFELADD 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G ++ V+MPMRI Sbjct: 351 LSPGVLKGGEE-------ADQGFTAVVMPMRI 375 >gi|91781386|ref|YP_556592.1| DNA polymerase III subunit beta [Burkholderia xenovorans LB400] gi|187922037|ref|YP_001893679.1| DNA polymerase III subunit beta [Burkholderia phytofirmans PsJN] gi|296157626|ref|ZP_06840461.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1] gi|91685340|gb|ABE28540.1| DNA polymerase III, beta subunit [Burkholderia xenovorans LB400] gi|187713231|gb|ACD14455.1| DNA polymerase III, beta subunit [Burkholderia phytofirmans PsJN] gi|295892398|gb|EFG72181.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1] Length = 367 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 204/388 (52%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDSVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++Y + + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I + +I+PRK + E+ R+L D ++K+ ++++++ + + Sbjct: 175 GHRLAFSSMKIEGSF-QRQEVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + + L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDTLQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|220915125|ref|YP_002490429.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans 2CP-1] gi|219952979|gb|ACL63363.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans 2CP-1] Length = 375 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 207/392 (52%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M++ + ++ + LG + I+E+K+T+P+ HVLL+A L + A+ ++ ++ Sbjct: 1 MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VSA LY+IVR L + N + + G S F + P +FP Sbjct: 61 EVLKEGAVAVSARHLYEIVRALPEQTVTLKKAHNNY---LEVKSGPSEFRIVGLPAEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V + ++L ++ERT FA++ +E RY LNG++F + L+L VATDGH Sbjct: 118 ALPRFDKVPFAPVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDS--SVKVSLSESRIHLNIE 233 RL+++E + A +I+P+K + E+ ++L S + K+ E+ Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEQPEAKLGFVENSAIFRRP 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ + +RLI+G FP+Y+ VIP + +K +V + + R+S++SS + AVKL LS D Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + NPD+G+A E + V Y P+ I FN +Y++E++ + S+ EVVF L Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKSN-----EVVFELADD 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++G ++ V+MPMRI Sbjct: 351 LSPGVLKGGEE-------ADQGFTAVVMPMRI 375 >gi|297537199|ref|YP_003672968.1| DNA polymerase III subunit beta [Methylotenera sp. 301] gi|297256546|gb|ADI28391.1| DNA polymerase III, beta subunit [Methylotenera sp. 301] Length = 366 Score = 336 bits (863), Expect = 3e-90, Method: Composition-based stats. Identities = 112/386 (29%), Positives = 208/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+E+++T+P+ ++LL+A + + A+ E++I+ +I ++ Sbjct: 1 MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSIESA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S T+SA L DI R L D ++I+ + + + + G S F LQ+ P +++P Sbjct: 61 TTGDFSTTISAKKLLDICRSLPDSSEINMATND---SRITLKAGKSRFNLQTLPAADYPV 117 Query: 121 TKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + LK+L+++ FAMA ++IRYYLNG+ F + +L V TDGH Sbjct: 118 MTKTQGESTLVTIGQRQLKDLLKQVEFAMAQQDIRYYLNGLLFEVVAN--RLNIVGTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ ++ K +I+PRK V E++++L D V++ L+ ++++ + + Sbjct: 176 RLSFTSTELKQNYDKQ-DVILPRKTVIELIKLLDDSDEDVQIELASNQVNFSFSHFKLIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG+FP+Y VIP + + + A+ R SI+S+ + + +++ LS++ L + Sbjct: 235 KVIDGKFPDYNRVIPTGHQNSFTTDRVGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D +A E + + Y +DI FN YL+++++N SS ++ F +NSS I Sbjct: 295 TNSDQEEAEEELEIDYAGDSLDIGFNVTYLIDVLNNTSS-----EQATFSFADANSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 N + YV+MPMRI Sbjct: 350 TVP---------NNTDYKYVVMPMRI 366 >gi|119896294|ref|YP_931507.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] gi|119668707|emb|CAL92620.1| DNA-directed DNA polymerase [Azoarcus sp. BH72] Length = 369 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 200/385 (51%), Gaps = 21/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R +L L I+E+++T+P+ +VL++ L + A+ EI+I + Sbjct: 4 LNTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKRGDQLTLLATDIEIQIRTTTAGHIG 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 SITV A L DI+R L D I E++ + + G S F LQ+ P +++P Sbjct: 64 GEDSSITVGARKLQDILRALSDSVDIVLTLEDK---RLTVKAGKSRFQLQTLPAADYPRM 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + K + + ++MA ++IRYYLNG+ + +L++ VATDGHR Sbjct: 121 NLPDGDAVRFSVPQRAFKRQLAQVSYSMAQQDIRYYLNGLLLIADGSELRM--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D+ + I+PRK V E+ R L+ D +++ L+ ++ S+ + + Sbjct: 179 LAYAAGDLAVPVQARTEAILPRKTVLELARQLADTDDPLEIILAGNQAVFRFGSIELVTK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ VIP ++ + + + L ++ R +I+++ + + V++ L L + Sbjct: 239 LIDGKFPDYERVIPQNHPRMVTFDRQPLLASLQRAAILTNEKFRGVRMVLGEGALKIISS 298 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y++ P+DI FN YLL++++N+SS ++V +R + NSS + Sbjct: 299 NTEQEEAQEELEIDYHDTPLDIGFNVTYLLDVLNNLSS-----EQVEWRFNDGNSSALVT 353 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D YV+MPMRI Sbjct: 354 LPGND---------KFKYVVMPMRI 369 >gi|295675103|ref|YP_003603627.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002] gi|295434946|gb|ADG14116.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002] Length = 367 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGDSVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + ++Y S + + L+ HF+MA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I A+ +I+PRK + E+ R+L D ++ + ++++++ + + Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLNIDIAQTQVKFTFGQVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + ++ L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNKFQIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y+ +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|241765811|ref|ZP_04763751.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN] gi|241364293|gb|EER59448.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN] Length = 372 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 26/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI+R + +S +++ + G S F LQ+ P +FP Sbjct: 64 TGDFTTTVGARKLIDILRTMPGDQTVSLES---AQSKLILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + LK+L+ + FAMA ++IRYYLNGI F + L L VATDGHR Sbjct: 121 QESAAFGPVFSVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + ++ K +I+PRK V E+ R+LS +++ + ++ + Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDAGGDNQPHIEMQFANNQAKFTFGGME 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L+L L Sbjct: 238 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A++ +++ Y ++I FN YL++ + N+ D V L NSS Sbjct: 298 VASNNAEQEEAVDELDIDYGGDTIEIGFNVTYLIDALANMG-----QDMVKVELSDGNSS 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D N YV+MPMRI Sbjct: 353 ALVTIPDN---------SNFKYVVMPMRI 372 >gi|134096622|ref|YP_001102283.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|291005724|ref|ZP_06563697.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL 2338] gi|133909245|emb|CAL99357.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 374 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 104/389 (26%), Positives = 172/389 (44%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59 MKI VER + + + R + + +PV VLL A+ G L I E+ I A Sbjct: 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDASSGEALTISGFDYEVSAQVTIDA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S+D G VS LL DI + L + G+ V I+ G S F L + P ++P Sbjct: 61 SIDSTGRTLVSGRLLADITKALPNRPVEITVD----GSRVTITCGSSRFSLPTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++ + + V + A ++ L G+ IN + +L VATD Sbjct: 117 ELPAMPD-HAGSVPGDLFSEAVSQVAVAAGKDDTLPMLTGVRMEINAD--RLTMVATDRF 173 Query: 180 RLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236 RLA+ E + S++VP K + + + L + + V++SL + + L+ S Sbjct: 174 RLAMREFTWEPGTTIEDTSVLVPAKTLSDSAKTLGTGGNKVEISLASGDGLLGLSGNSRR 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL+D EFP Y+ ++P + V+ L +A+ RVS+++ R V+L S L Sbjct: 234 STTRLLDAEFPKYRQLLPSESAVTAVVDVAPLVEAIKRVSLVA-ERGTQVRLEFSDAGLR 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T D G A E + V + I FN YLL+ + + S D +SN Sbjct: 293 LTAGGDDEGSAEEELPVELVGEALTIAFNPAYLLDGLGALKS-----DRAQMLFTTSNRP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +D + + Y+LMP+R+ Sbjct: 348 AVLKPVGEDGEVAE----GYLYLLMPVRL 372 >gi|319760740|ref|YP_004124677.1| DNA polymerase iii, beta subunit [Alicycliphilus denitrificans BC] gi|330822655|ref|YP_004385958.1| DNA polymerase III subunit beta [Alicycliphilus denitrificans K601] gi|317115301|gb|ADU97789.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans BC] gi|329308027|gb|AEB82442.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans K601] Length = 368 Score = 336 bits (862), Expect = 4e-90, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 196/385 (50%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L+ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQFTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S T++ + G S F LQ+ P +FP Sbjct: 64 TGDFTTTVGARKLIDILKTMPADQTVSL---ENSQTKLILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + +F + LK L+ + FAMA ++IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAASFGPAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGILFVAEGKTLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A ++ ++ K +I+PRK V E+ R+LS D ++++ + ++ + + Sbjct: 179 LAFASSELDMEVPKQE-VILPRKTVLELQRLLSDADGAIEMRFANNQAKFGFGGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L + Sbjct: 238 LVEGKFPDYNRVIPRNHHNVITLGRAPLLASLQRTAIMTSEKFKGVRLNIEPGSLRVASS 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y ++I FN YL++++ N+ D V L NSSV Sbjct: 298 NAEQEEAVDELDIDYGGDSIEIGFNVTYLIDVLANMG-----QDMVRMELADGNSSVVFG 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + YV+MPMRI Sbjct: 353 IPDN---------THFKYVVMPMRI 368 >gi|186474775|ref|YP_001856245.1| DNA polymerase III subunit beta [Burkholderia phymatum STM815] gi|184191234|gb|ACC69199.1| DNA polymerase III, beta subunit [Burkholderia phymatum STM815] Length = 367 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 201/388 (51%), Gaps = 24/388 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER ++L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 1 MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGGESVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ + + + L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 117 PTVAQAKDFGANLAVPQKTFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + I A+ +I+PRK + E+ R+L D +K+ ++ +++ + + Sbjct: 175 GHRLAYSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDVLKIDIAPTQVKFTFGGVEL 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP S+ + L++++ R +I++S + + V+ + +L + Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNTFVIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKI 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +DI FN YLL+++ N+ D + L ++SS Sbjct: 294 MSTNADQEEAQEELEIPYQGDSIDIGFNVTYLLDVLANLK-----VDMLEISLGDASSSA 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367 >gi|223935962|ref|ZP_03627876.1| DNA polymerase III, beta subunit [bacterium Ellin514] gi|223895184|gb|EEF61631.1| DNA polymerase III, beta subunit [bacterium Ellin514] Length = 369 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 27/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T+ + ++ L ++ + T+P+ +VL++A LE A+ ++ I+ + A+ Sbjct: 1 MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV L+ IVR+L + E + +I G S + + EFP Sbjct: 61 VKEGGATTVPVKKLFGIVRELNNPEI---EIEVDEKNTCSIRSGSSFYKINGLSADEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L +K ++++T FA++T+E RY LNGIF + E KL VATDG R Sbjct: 118 LPKFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEH--KLTMVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-----L 235 LA+ + ++ IVP KAV E+ R+L+ K V++ SE++ ++ + Sbjct: 176 LALVDEEVDVTEKSQGEFIVPAKAVNELNRLLTDK-GEVEIRYSENQAAFTLKDEKGFSI 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +LI+G +PNY+ VIP + + + A+ R IM+S + +VKL+ S + L Sbjct: 235 LIISKLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNNL 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T ++P++G+A ES+ + Y M I FN KY+++ ++ +S +DE+ L S Sbjct: 295 AITANSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALS-----NDEIFLELIDELS 349 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ YV+MPMR+ Sbjct: 350 PGVVKINGP-----------FLYVVMPMRL 368 >gi|78221230|ref|YP_382977.1| DNA polymerase III subunit beta [Geobacter metallireducens GS-15] gi|78192485|gb|ABB30252.1| DNA polymerase III, beta subunit [Geobacter metallireducens GS-15] Length = 373 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 108/390 (27%), Positives = 204/390 (52%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++ L I+E++NT+P+ +VL++A+ +E+ A+ E+ + + + Sbjct: 1 MEFKIDKETFSRALQKIQGIVEKRNTMPILSNVLIEAHADRIELTATDLEVGMKSSYETT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA LY+IV++L + A KEN+ V I G ++F + EFP Sbjct: 61 VTREGRITVSAKKLYEIVKELPEEAISFATKEND---WVEIRCGKAHFSIVGLSPEEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + ++L +++E+T +A+ +E +Y LNG F ED K L VATDG Sbjct: 118 FPKVNEESLIRIEGALLADMIEKTAYAICFDETKYNLNGTFVKATVEDDKPILRMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235 HRL++AE + + + +I P+K + E+ +I + + ++ + + Sbjct: 178 HRLSIAEKEFHGAVGPEMAKGVIFPKKGIFELKKICEEATTEELALGFMDNSAVIKKGNT 237 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +RL+DGEFP+Y V+P +NDK + V ++ R+SI+SS + + +++ ++ +++ Sbjct: 238 VVVMRLVDGEFPDYTRVVPVANDKIVTVARDPFLHSLRRMSILSSEKFKGIRMEINGEQM 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ NP++G+A E ++ Y+ P+ I FN KYLL+++ ++ + EV L S Sbjct: 298 IISSSNPELGEASEELDAAYSGPPLSIRFNAKYLLDVLAVLN-----ESEVALVLRDELS 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D V+MPMR+ Sbjct: 353 PAIVKPAAVD---------GFTAVIMPMRL 373 >gi|54021966|ref|YP_116208.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152] gi|54013474|dbj|BAD54844.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM 10152] Length = 386 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 25/397 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D E + R + + +PV VLL AN+ L + E+ + A Sbjct: 1 MKFRVAREDFAESVAWVARSLPSRPPVPVLGGVLLVANEDGLTVSGFDYEVSAQMRVAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI + L + GT V I+ G + F L + P ++P Sbjct: 61 VAGPGEVLVSGRLLADITKALSNKPVDVSVD----GTRVLITCGSAKFSLPTMPVEDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + EL+ V V + A ++ L GI I + L ATD R Sbjct: 117 LPEVPQ-QTGELSVDVFAEAVGQVAVAAGRDDTLPMLTGIRVEIEGSQVVL--AATDRFR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIES 234 LAV ++ + ++++P + + E + L + D+ V++SL S+ + + Sbjct: 174 LAVRHIEWTPARPDIETAVLIPARTLSEAAKTLGASDAPVQLSLGTGAGSDGLLGIVNAG 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ ++P + + L +A+ RV++++ R V+L S++ Sbjct: 234 RRTTTRLLDAEFPKFRQLLPKEHTSVATLAVAALTEAIKRVALVA-ERGAQVRLEFSTEG 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D G+A E + + P+ I FN YL++ + + + D V F + + Sbjct: 293 LLLSAGGDDAGRAEEWLEADFRGEPLTIAFNPGYLVDGLSALHA-----DRVTFGFTTPS 347 Query: 355 SSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 + ++ D+ N Y+LMP+R+ Sbjct: 348 RPAVLLPASEEEPQTLDSGAFAALTGNYTYLLMPVRL 384 >gi|160895452|ref|YP_001561034.1| DNA polymerase III subunit beta [Delftia acidovorans SPH-1] gi|160361036|gb|ABX32649.1| DNA polymerase III, beta subunit [Delftia acidovorans SPH-1] Length = 372 Score = 336 bits (861), Expect = 5e-90, Method: Composition-based stats. Identities = 112/389 (28%), Positives = 198/389 (50%), Gaps = 26/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S + ++ + G S F LQ+ P +FP Sbjct: 64 TGDFTTTVGARKLIDILKTMPGDQTVSLETQ---QAKMVLKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + SF + VLK+L+ + FAMA ++IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAAAFGPSFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + ++ K +I+PRK V E+ R+LS +++ + ++ + Sbjct: 179 LAFASSQLDVEVPKQE-VILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGME 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L++ L Sbjct: 238 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLTVEPGTLR 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A++ +++ Y ++I FN YL++ + N+S D + L NSS Sbjct: 298 VASNNAEQEEAMDELDIDYGGDTIEIGFNVTYLIDALSNMS-----QDMIRIDLQDGNSS 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + DS YV+MPMRI Sbjct: 353 ALLTIPENDS---------FKYVVMPMRI 372 >gi|89898824|ref|YP_521295.1| DNA polymerase III subunit beta [Rhodoferax ferrireducens T118] gi|89343561|gb|ABD67764.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118] Length = 367 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 109/384 (28%), Positives = 191/384 (49%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGTSLQLTTSDLEIQIRTTAELDGD 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 TV A L DI+R + +S ++ + G S F LQ+ +FP + Sbjct: 64 TGDFTTVGARKLIDILRTMPADQTVSLES---SAAKLILKGGKSRFTLQTMAAEDFPLVQ 120 Query: 123 EE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + F + LK+L+ + FAMA +IRYYLNGI F L L VATDGHRL Sbjct: 121 EAASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGSQLSL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A + ++ K +I+PRK V E+ R+LS ++++ + ++ + + + +L Sbjct: 179 AFASATLDVEVPKQE-VILPRKTVIELQRLLSDTQGAIEMQFANNQAKFSFDGMEFVTKL 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 ++G+FP+Y VIP ++ + + + L + R +I++S + + V+L++ L + +N Sbjct: 238 VEGKFPDYNRVIPKNHQNSITLGRSALLATLQRTAILTSEKFKGVRLNIDPGTLRVASNN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A++ +++ Y ++I FN YL++ + N+S D V L NSS Sbjct: 298 AEQEEAVDELDIDYGGDSIEIGFNVTYLIDALANMS-----QDMVRLELSDGNSSALFTI 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D YV+MPMRI Sbjct: 353 PDN---------ATFKYVVMPMRI 367 >gi|116619147|ref|YP_821303.1| DNA polymerase III subunit beta [Candidatus Solibacter usitatus Ellin6076] gi|116222309|gb|ABJ81018.1| DNA polymerase III, beta subunit [Candidatus Solibacter usitatus Ellin6076] Length = 372 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 108/389 (27%), Positives = 187/389 (48%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV +SD++ L + ++E+K TIP+ +VLL+A D + + A+ E+ I + PA Sbjct: 1 MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS TV A L D +R L +G F +N +I+ G S + FP Sbjct: 61 VKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNH---WASITSGRSRTRIAGMSRESFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L +++ RT FA++ EE R+ LNG + E L + VATDGHR Sbjct: 118 LPQMPEPIAQV-PVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTM--VATDGHR 174 Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLS 236 LA + + K +VP+KA+ E+ ++ V+ ++ + I Sbjct: 175 LAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRL 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + R + G FP+Y+ V+P + ++ +R A++RV+ + R +A+++ +S ++ Sbjct: 235 LITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQFADERSRAIRVQFNSGEVR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + + G++ ES+ Y ++I FN +YLL+ + IS D V F L S+ Sbjct: 295 VFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAIS-----QDHVAFELKDQKSA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + YV+MPMRI Sbjct: 350 GELRPAGDAIADQ------YRYVVMPMRI 372 >gi|318042961|ref|ZP_07974917.1| DNA polymerase III subunit beta [Synechococcus sp. CB0101] Length = 376 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 98/391 (25%), Positives = 190/391 (48%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++ Sbjct: 1 MKLVCSQAELNASLQLVSRAVAGRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV G+IT+ A L +IV ++ + IS E E G +V ++ ++ ++ P +F Sbjct: 61 ASVHTSGAITLPARLFGEIVARMPSDSPISLSCE-EGGEQVELTSASGSYQMRGMPAEDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + +L VL + T FA +++E + L G+ +N E L+ ATDG Sbjct: 120 PELPLAQAATPIKLDPDVLAKGLRATLFASSSDEAKQLLTGVHLGLNAEGLE--CAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236 HRLAV ++ A+ + VP +++ E+ R+LSS V + ++ Sbjct: 178 HRLAVLRLENNAEGEAELDVTVPARSLRELERLLSSRSGGDPVSLFCDRGQVVFQFADQV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DK 294 ++ R +DG +PNY+ +IP S + L+++ L A++RV++++ VK++ + Sbjct: 238 LTSRSLDGTYPNYRQLIPESFARSLKLDRKGLLGALERVAVLADQHNNVVKITSDPVAGQ 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D D+G E++ + + I FN +Y+LE + +++ + V R ++ Sbjct: 298 LAISADAQDVGSGSEAIAADVSGDAIQIAFNVRYVLEGLKAMAA-----ERVELRCNAPT 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V + +D + Y++MP++I Sbjct: 353 TPVVLAPQDDSA---------FTYLVMPVQI 374 >gi|189423084|ref|YP_001950261.1| DNA polymerase III subunit beta [Geobacter lovleyi SZ] gi|189419343|gb|ACD93741.1| DNA polymerase III, beta subunit [Geobacter lovleyi SZ] Length = 372 Score = 335 bits (860), Expect = 6e-90, Method: Composition-based stats. Identities = 114/389 (29%), Positives = 203/389 (52%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R L+ L I+E++ ++P+ ++L++A LEI A+ E+ + G PA Sbjct: 1 MNFKIDRDTFLKALQKVQGIVEKRTSMPILSNILIEAQGDNLEIIATDLEVGLKGNYPAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G ITV A LY+IV++L + KEN+ V I+ G F + P EFP+ Sbjct: 61 VEKDGRITVGAKKLYEIVKELPNQEITFSTKEND---WVEITCGKVRFNIVGLPSDEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF--FHINEEDLKLCAVATDG 178 + EL +++L+ ++E+T +A+ +E +Y LNGIF +E+ L VATDG Sbjct: 118 VATVKDEQLLELEAALLRKMIEKTSYAICNDETKYNLNGIFTRVEQSEKGQCLKMVATDG 177 Query: 179 HRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++A A + +I+P+K + EI +I D ++ +S + + Sbjct: 178 HRLSIASGPFSGTANPELLKGVILPKKGIFEIKKITDEGDGLLQFGFVDSSAVIKKGDTT 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RL+DGEFP+Y VIP +N++ ++ L AV R++I+SS + + + L + + + Sbjct: 238 LIMRLVDGEFPDYTRVIPAANEQIVKAPREELIHAVRRMAILSSEKFKGIMLEIEGNAVK 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G A+E ++V Y+ P + FN +YLL+++ S V+ + + S Sbjct: 298 ISSSNPELGDAMEELDVSYDGNPFSVRFNARYLLDVLMVCESQHVL-----MKFKNELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D V+MPMR+ Sbjct: 353 SIVTPDSDDEL---------LAVIMPMRL 372 >gi|288939766|ref|YP_003442006.1| DNA polymerase III subunit beta [Allochromatium vinosum DSM 180] gi|288895138|gb|ADC60974.1| DNA polymerase III, beta subunit [Allochromatium vinosum DSM 180] Length = 366 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 117/385 (30%), Positives = 202/385 (52%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ R +L L ++ER+ T+P+ ++L+ A G + + + E+E+ + A Sbjct: 1 MEFVANREIVLPALNKVIGVVERRQTLPILGNLLVVARAGRVTLTGTDLEVEVKTSFEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G T+ A L DI R L +GA+I ++E ++ G F L P ++FP+ Sbjct: 61 IQQEGETTIPARKLVDICRNLSEGAEIRLRVKDE---RCVVTSGRGRFTLGLLPAADFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 EE + F++ S LK L+++T FAMA +++RYYLNG+ ++ L AVATDGHR Sbjct: 118 MDLEEGGFDFQIQESQLKRLLDKTAFAMAQQDVRYYLNGLLLELHAT--VLIAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + +IVP K V E+ R L S D + + LSE + + + +++M+ + Sbjct: 176 LAKFVTPLDLTLDTERQVIVPNKTVMELKRQLGSSDDPISIRLSERSLRVVVGAMTMTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+DG +P Y+ VIP + + V L++A+ R SI+S+ + + V+LS L + Sbjct: 236 LVDGRYPEYERVIPGHSGRTATVEKDALKRALSRTSILSNEKYRGVRLSFDPGTLKLLAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + Y+ P+ I FN YL++++ I + V+ +N S R Sbjct: 296 NPEQEEAEEEIELEYDGEPISIGFNVAYLMDVLGVID-----ETAVIIHFQDANGSSIWR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G +S+ +V+MPMR+ Sbjct: 351 GVGGESE---------TFVVMPMRL 366 >gi|187735318|ref|YP_001877430.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC BAA-835] gi|187425370|gb|ACD04649.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC BAA-835] Length = 366 Score = 335 bits (859), Expect = 9e-90, Method: Composition-based stats. Identities = 108/384 (28%), Positives = 190/384 (49%), Gaps = 21/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ + L+ L ++ K T+P+ +V ++A +G + A+ ++ ITG +PA+ Sbjct: 1 MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T+ A L I+ +L + + + + G S F L P EFP Sbjct: 61 VLREGTVTLPAKKLVSIISELPEAEV---QVDVNQRNQAAVECGRSQFKLNGLPADEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +++ ++L++ + RT +A++T+ RY LNGI + K+ VATDG R Sbjct: 118 LPSFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGISLSFR--NGKMTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+AE + + I+P KAVGE+ R+L + +V + + ++ I + + Sbjct: 176 LALAETALEFPEEQQLDAILPTKAVGELRRLL-DEVGTVTIRFTRNQAAFEINDTLLISK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG +PNY+ VIP + + + C L + V RVS++S + +KL+ ++L + Sbjct: 235 LIDGNYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVASS 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+A ESM + Y+ P+ I FN + + + ++ D V + L S ++ Sbjct: 295 AEGVGEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTV----ITLNLIDEMSPGVLK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 D+ YVLMPMR Sbjct: 351 IGDE-----------FLYVLMPMR 363 >gi|120401030|ref|YP_950859.1| DNA polymerase III subunit beta [Mycobacterium vanbaalenii PYR-1] gi|119953848|gb|ABM10853.1| DNA polymerase III, beta subunit [Mycobacterium vanbaalenii PYR-1] Length = 398 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 95/398 (23%), Positives = 175/398 (43%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R D + + R + + T+PV VLL +D L I E+ IPA + Sbjct: 13 KFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTISGFDYEVSAEVQIPAEI 72 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + GT V+++ G + F L + P ++P+ Sbjct: 73 ASPGSVLVSGRLLSDIVRALPAKPVDVSVE----GTRVSLTCGSARFSLPTMPVEDYPTL 128 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 +S + + + A ++ L GI I+ E K+ ATD RL Sbjct: 129 PTLPDETGVV-SSDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 185 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A +++VP K + E + + + V ++L E + + + Sbjct: 186 AVRELTWSTGAAGVEAAVLVPAKTLAEAAKAGTDGNE-VHLALGAGPSVGKEGLLGIRSK 244 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ + Sbjct: 245 GKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVA-DRGAQVRMEFADG 303 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V ++ P+ I FN YL + + ++ + + V F + Sbjct: 304 VLRLSAGADDVGRAEEDLPVEFSGDPLTIAFNPTYLTDGLSSLHA-----ERVTFGFTTP 358 Query: 354 NSSVFIRGKDKD------SKNNKDNKVNAFYVLMPMRI 385 + +R +D S + + Y+LMP+R+ Sbjct: 359 SRPAVLRPAAEDDGGAGGSGPFPAAQTDYVYLLMPVRL 396 >gi|307825355|ref|ZP_07655574.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96] gi|307733530|gb|EFO04388.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96] Length = 366 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 115/385 (29%), Positives = 202/385 (52%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +IL L +IE++ T+P+ +VL+ + L + + EI+I I + Sbjct: 1 MKFIINREEILVPLQQIVSVIEKRQTMPILSNVLMVIEENQLILTGTDLEIQIIAKINIA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSITV A DI R L +GA+I F +++ +V I+ S F L P +P Sbjct: 61 TATPGSITVPARKFLDICRLLPNGAEIKFELQDD---KVKIASSRSRFSLSCLPADNYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + K +++T F MA +++RYYLNG+ +++ LKL VA+DGHR Sbjct: 118 FAESELENHLFINAGKFKKALDKTVFCMANQDVRYYLNGLLLNVSNSKLKL--VASDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ E ++ II+PRK V E+ R+L ++ +KV S + I + I++L S + Sbjct: 176 LSIYEDNLDQATGFEARIILPRKGVLELNRLLDDPEAELKVEFSSNNIRIFIKNLIFSAK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+D ++P++ V ++ + L++A+ RV+I+S+ + + V + D L ++ Sbjct: 236 LVDSKYPDFGKVFQQEFFNQIHIQKQILKEALTRVAILSNEKFKGVTFDIKPDSLKISTH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + Y P+ I FN +YLL+ + N+ S+ V + S+ SS FI Sbjct: 296 NPEHDEAEEELFIEYTGEPLTIAFNAQYLLDAVSNLDSEL-----AVLTIASNASSCFI- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +++MPMR+ Sbjct: 350 --------DEPGDCGYKFIVMPMRL 366 >gi|253698658|ref|YP_003019847.1| DNA polymerase III subunit beta [Geobacter sp. M21] gi|251773508|gb|ACT16089.1| DNA polymerase III, beta subunit [Geobacter sp. M21] Length = 372 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 106/389 (27%), Positives = 204/389 (52%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ L I+E++NT+P+ + LL+ + L I A+ E+ + + P + Sbjct: 1 MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G ITVSA LY+IV+++ D K+N+ V I+ G + F + EFP Sbjct: 61 AIREGKITVSAKKLYEIVKEMPDEEIHFTTKDND---WVEITCGKARFNIVGLSSEEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + + +L +++E+T +A+ +E +Y LNG+F +E+ + L VATDG Sbjct: 118 FPKVKEESFLVFKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENVLKMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL+V++ I I S +I P+K + E+ +++ + + + ++ + + Sbjct: 178 HRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEESGEIMLGFMDNSAVIKKGNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDGEFP+Y VIP SND+ +++N ++ R++I+SS + + VK+ ++ + + Sbjct: 238 VVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVNPELVI 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G+A E + V Y + FN KYL++++ + EV +L S Sbjct: 298 ISSSNPELGEAREEIEVQYEGNSISARFNAKYLIDVLSVMEQR-----EVELKLKDELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ ++ V+MPMR+ Sbjct: 353 VIMKAAAEEE---------FLAVIMPMRL 372 >gi|296137753|ref|YP_003644996.1| DNA polymerase III subunit beta [Tsukamurella paurometabola DSM 20162] gi|296025887|gb|ADG76657.1| DNA polymerase III, beta subunit [Tsukamurella paurometabola DSM 20162] Length = 396 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 164/399 (41%), Gaps = 28/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + E + R + + +PV VLL A D L + E+ + A Sbjct: 10 MKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTVSGFDYEVSAQVRVGAE 69 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI + L + T V IS G + F L + P ++P Sbjct: 70 VADEGQVLVSGRLLADITKALPNKP----VDVELDVTRVAISCGSAKFSLPTMPVEDYPQ 125 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + S+ + + A ++ L GI I E ++ ATD R Sbjct: 126 LPELPQ-QTGAIERSMFAEAISQVAIAAGKDDTLPMLTGIRVEI--EGQRVVLAATDRFR 182 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232 LAV E D Q +++VP K + E + + DS V ++L + + + Sbjct: 183 LAVREFDWQPQSGDVKAAVLVPAKTLSEAAKTFA-GDSEVGIALGAGSAVGADGLLGVVG 241 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+D +FP ++ ++P S+ + L +A+ RV++++ R V++ Sbjct: 242 PDRRTTTRLLDADFPKFRQLLPASHTAIATMEIAPLLEAIKRVALVA-DRGAQVRMEFGD 300 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ D GKA E + + P+ I FN YL + + I + D V F + Sbjct: 301 GTLRLSAGGDDAGKAEEELPADFQGEPLTIAFNPGYLQDGLAAIHT-----DSVTFGFTT 355 Query: 353 SNSSVFIRG------KDKDSKNNKDNKVNAFYVLMPMRI 385 + +R + DS + Y+LMP+R+ Sbjct: 356 PSRPAVLRPTVENAFQPDDSGAFPAPQSAYTYLLMPVRL 394 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 26/188 (13%), Positives = 69/188 (36%), Gaps = 16/188 (8%) Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + F + V ++ + L G+ ++ L + D Sbjct: 2 SLPKGSVGMKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTVSGF--DYE 59 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 A V A++A ++V + + +I + L +K V V L +R+ ++ S S+ Sbjct: 60 VSAQVRV--GAEVADEGQVLVSGRLLADITKALPNK--PVDVELDVTRVAISCGSAKFSL 115 Query: 240 R-LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSD 293 + ++P +P + + + +A+ +V+I + +++ + Sbjct: 116 PTMPVEDYPQ----LPELPQQTGAIERSMFAEAISQVAIAAGKDDTLPMLTGIRVEIEGQ 171 Query: 294 KLCMTVDN 301 ++ + + Sbjct: 172 RVVLAATD 179 >gi|39995112|ref|NP_951063.1| DNA polymerase III subunit beta [Geobacter sulfurreducens PCA] gi|39981874|gb|AAR33336.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens PCA] gi|298504142|gb|ADI82865.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens KN400] Length = 372 Score = 334 bits (858), Expect = 1e-89, Method: Composition-based stats. Identities = 106/389 (27%), Positives = 201/389 (51%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R L I+E++NT+P+ +VL++A + +E+ A+ E+ + + P + Sbjct: 1 MEFTIDRDTFSRALQKIQGIVEKRNTMPILSNVLIEALEDRIELTATDLEVGMKSSYPTT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA LY+IV++L D K N+ V I G + F + EFP Sbjct: 61 VASQGKITVSAKKLYEIVKELPDETISFLTKANDY---VEIRCGKAKFTIVGLSSEEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + S +L +++E+T +A+ +E +Y LNG F +EED + L VATDG Sbjct: 118 FPKVNEESFIRIESGLLADMIEKTSYAICFDETKYNLNGTFVKASEEDGRSILRMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++ + + ++ + +I P+K + E+ ++ + + + + ++ + + Sbjct: 178 HRLSITQREFNGAVSPEMAKGVIFPKKGIFELKKMCEEESTQLSLGFLDNSAVIVKGNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RL+DGEFP+Y V+P +ND+ + V ++ R+SI+SS + + +K+ + + Sbjct: 238 VVMRLVDGEFPDYTRVVPVANDRIVTVARDPFFHSLRRMSILSSEKFKGIKMDIQESGMV 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G+A E ++ + + I FN KYL++++ + + V L S Sbjct: 298 ISSSNPELGEASEELDAVFAGDAISIRFNAKYLIDVLAVLD-----ESSVALHLKDELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D D V+MPMR+ Sbjct: 353 AIVRPADGD---------GFTAVIMPMRL 372 >gi|325267546|ref|ZP_08134198.1| DNA-directed DNA polymerase III beta subunit [Kingella denitrificans ATCC 33394] gi|324980896|gb|EGC16556.1| DNA-directed DNA polymerase III beta subunit [Kingella denitrificans ATCC 33394] Length = 367 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 113/380 (29%), Positives = 198/380 (52%), Gaps = 21/380 (5%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66 R D+L+ L I+ERK+T+P+ ++LLQ+ +G +++ A+ EI+I Sbjct: 8 RDDLLKPLQAVTGIVERKHTLPILSNILLQSENGQVQLLATDLEIQIHTLGAQGAQPDFR 67 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEE 125 IT +A L DI+R L D + + + ++ + G S F LQ+ P +FP+ +E Sbjct: 68 ITTNAKKLQDILRALPDSSTVQLDLADH---KLTLKAGKSRFNLQTLPAQDFPTMNVDEN 124 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F L LK+++ + +MA ++IR+YLNG+ L+L VATDGHRLA Sbjct: 125 TSAAFALPQETLKHMISQVQHSMAVQDIRFYLNGLLMQTEGNQLRL--VATDGHRLAFTS 182 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + ++ K +I+PRK V E+ ++L+ +V V L +++I + ++IDG Sbjct: 183 ATLETELPK-HDVILPRKTVLELNKLLTQPKENVVVELLDNQIRFRCNDTVIVSKVIDGR 241 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 FP+Y VIP N ++ +L A++R SI+++ + + V+L + L +T N + Sbjct: 242 FPDYNRVIPMDNKNIFVIDRLSLLGALERSSILANEKFRGVRLLVQPGSLHITCTNNEQE 301 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 +A E +++ Y +D+ FN +LL+++ N+ S DEV S++ + Sbjct: 302 EASEELDIAYQGESLDVGFNITFLLDLLRNVHS-----DEVQLAFGSADRATLFTVP--- 353 Query: 366 SKNNKDNKVNAFYVLMPMRI 385 N+ YV+MPMRI Sbjct: 354 ------NRPEFKYVVMPMRI 367 >gi|91774358|ref|YP_544114.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT] gi|91708345|gb|ABE48273.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT] Length = 367 Score = 334 bits (857), Expect = 1e-89, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 210/387 (54%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+ER++T+P+ ++LL+A +++ A+ E++I+ ++ ++ Sbjct: 1 MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S T+SA L DI R L + A+I+ ++ + + + G S F LQ+ P ++P Sbjct: 61 AGGELSTTISAKKLLDICRSLPENAEITMATQD---SRIQVKTGKSRFNLQTLPAGDYPL 117 Query: 121 TKEEEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E S ++ LK L ++ FAMA ++IRYYLNG+ F +N +L V TDG Sbjct: 118 MTKTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ ++ + K II+PRK V E++++L + V + L+ + + + + Sbjct: 176 HRLSFTSTELASSYEKQE-IILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP + V+ T + ++ R SI+S+ + + +++ LS++ L + Sbjct: 235 SKVIDGKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y +DI FN Y++++++N S + V F +NSS Sbjct: 295 STNSEQEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDS-----ESVTFSFADANSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ D N YV+MPMRI Sbjct: 350 VTVENDD---------NYKYVVMPMRI 367 >gi|302035396|ref|YP_003795718.1| DNA polymerase III subunit beta [Candidatus Nitrospira defluvii] gi|300603460|emb|CBK39790.1| DNA polymerase III, beta subunit [Candidatus Nitrospira defluvii] Length = 376 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 116/393 (29%), Positives = 195/393 (49%), Gaps = 25/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R ++L L ++E++NT+P+ ++LL+A EI A+ EI + G A+ Sbjct: 1 MKVRIGREELLTGLQRVQGVVEKRNTMPILSNILLEAKHDGAEIVATDLEIGMRGLYKAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G +T+SA LY+I+++L G +N T I G S F + P ++P+ Sbjct: 61 VLEAGGVTISARKLYEIIKELPSGEIELTSGDNNWTT---IQSGKSQFKVVGLPSGDYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL---CAVATD 177 E LA + L L+ +T FA + RY LNG+ + + K V TD Sbjct: 118 LPSIEREGLTPLAGAGLLELIRKTLFAAGDNDARYILNGLLVSLTTTEKKTTLLRLVGTD 177 Query: 178 GHRLAVAEVDIVAQIAKMPS----IIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNI 232 GHRLAVAE ++ AK P+ I+P+KA E+ R+L D + +++ + Sbjct: 178 GHRLAVAEREVGTPNAKQPAQDIKAIIPKKAAQEMRRLLEEGGDEEPLIGFTKNLMIFRK 237 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 L ++ RL++G +PNYQ V+P + K + VN L A+ RVS++S + AVK+S + Sbjct: 238 SGLLLTSRLMEGNYPNYQQVVPKESGKRIAVNRGLLESALRRVSVLSKDKANAVKVSFAP 297 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + NPD G+A E + Y + FN +YLL+ + + + V ++D+ Sbjct: 298 GGMTLFSSNPDYGEATEELVARYEGEALHTGFNARYLLDALSVMDG-----ESVSLQMDT 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S I+ + V+MP++I Sbjct: 353 ALSPCLIQEAESP---------GFKCVVMPIKI 376 >gi|326387150|ref|ZP_08208760.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens DSM 19370] gi|326208331|gb|EGD59138.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens DSM 19370] Length = 356 Score = 334 bits (856), Expect = 2e-89, Method: Composition-based stats. Identities = 147/374 (39%), Positives = 225/374 (60%), Gaps = 25/374 (6%) Query: 18 CRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLY 75 ++ER+NTIP+ +VL+ A G +++ A+ +++I ++PA SV+V G+ITVSAHLL+ Sbjct: 2 QSVVERRNTIPILSNVLIDAAATGSVKLMATDLDLQIIESMPAVSVEVPGAITVSAHLLF 61 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135 DI RKL DG+Q+S + + + G S F L + P +FP E + SFE+ + Sbjct: 62 DIARKLPDGSQVSLETAD---NRMIVKAGRSRFQLPTLPRDDFPVIVEGDLPTSFEIPAR 118 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 L L++RT FA++TEE RYYLNGIFFH+++E LK A ATDGHRLA + M Sbjct: 119 TLAELIDRTRFAISTEETRYYLNGIFFHVSDEVLK--AAATDGHRLARYTLPRPEGAEGM 176 Query: 196 PSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES---LSMSVRLIDGEFPNYQN 251 P +I+PRK VGE+ ++L D++V V LS S++ + + ++ +LIDG FP+Y Sbjct: 177 PDVIIPRKCVGELRKLLEDVLDTNVLVDLSASKVRFTLGGEFGVVLTSKLIDGTFPDYSR 236 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311 VIP NDK LR++ + + VDRV+ +++ + +AVK++L +D++ ++V +PD G A E + Sbjct: 237 VIPTGNDKLLRLDPRSFFEGVDRVATIATEKTRAVKMALDTDRVTLSVTSPDNGTAAEEL 296 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 Y +I FN YL +I+ I D V L +++ IR KD Sbjct: 297 PADYQASGFEIGFNANYLKDILSQIDGDL-----VELHLADASAPTLIR---------KD 342 Query: 372 NKVNAFYVLMPMRI 385 +K A YVLMPMR+ Sbjct: 343 DKSPALYVLMPMRV 356 >gi|297717814|gb|ADI50050.1| DNA polymerase III beta subunit [Candidatus Odyssella thessalonicensis L13] Length = 375 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 135/390 (34%), Positives = 229/390 (58%), Gaps = 20/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER D L+ L H ++E++ T+P+ HVL+QA D L + + ++ + +IPA Sbjct: 1 MKFAVERGDFLKALAHGGSVVEKRTTVPILSHVLIQAEDSQLHLTTTDMDLALVESIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GSITVSAH+L +IVRKL DG +I N+ ++ + G S F + + P +FP Sbjct: 61 VEAPGSITVSAHMLLEIVRKLPDGVKIEATL-NQANDQLTLKAGKSRFNIATLPAEQFPK 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + +SF+L + L+ L++R+ FAM+TEE RY+LNGI+FH +E + + +VATD Sbjct: 120 LTQNDLPFSFKLTAEKLRYLIDRSRFAMSTEETRYFLNGIYFHAHEINGQKVFRSVATDA 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLNIESLS 236 HRLA EV + +P IIV RK + EI ++++ + ++ + +SLS R+ + + Sbjct: 180 HRLACIEVPVPEGAESIPGIIVGRKTITEIRKLINDENPEAEITISLSPQRVEFKLPQAT 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +S RL+DG +P+Y+ IP NDK + V+ + +AVDRV+ +++ ++ +K+S++ +KL Sbjct: 240 LSSRLVDGTYPDYEQAIPKGNDKPVIVDAKDFAKAVDRVATVTTDKLPVIKISVAKNKLT 299 Query: 297 MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + ++G A E M V + ++I FN YL++I + ++ D+ L ++ Sbjct: 300 LVAASSELGDATEEMEVDFPFDHSIEIGFNANYLVDI-----TSQIGDEAAEILLSDGSA 354 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+G N A +VLMPMR+ Sbjct: 355 PAIIKGI---------NDKEALFVLMPMRV 375 >gi|317968477|ref|ZP_07969867.1| DNA polymerase III subunit beta [Synechococcus sp. CB0205] Length = 376 Score = 333 bits (855), Expect = 2e-89, Method: Composition-based stats. Identities = 98/391 (25%), Positives = 190/391 (48%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++ Sbjct: 1 MKLVCSQAELNSSLQLVSRAVAARPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV G+IT+ A L +IV ++ + I+ E E +V ++ ++ ++ P +F Sbjct: 61 ASVATSGAITLPARLFGEIVSRMPADSPITLSCE-EGSEQVELTSLSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + +L VL + T FA + +E + L G+ +++ L+ ATDG Sbjct: 120 PELPLAQAGTPIKLDPEVLIKGLRATLFASSGDEAKQLLTGVHLGLDQNGLE--CAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236 HRLAV + + + VP +++ E+ R+LSS+ S VSL ++ Sbjct: 178 HRLAVLRLQNASSSEAELDVTVPARSLRELERLLSSRGGSDAVSLFCDRGQVVFQWADQV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DK 294 ++ R +DG +PNY+ +IP S ++L+V+ L +A++RV++++ VKL+ + Sbjct: 238 LTSRSLDGTYPNYRQLIPESFGRQLQVDRKGLLRALERVAVLADQHNNVVKLTSDPAAGQ 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D D+G E++ + + I FN +Y+LE + + ++V + ++ Sbjct: 298 LSISADAQDVGSGSEAIGAQVSGDAIQIAFNVRYVLEGLKAMGC-----EQVQLQCNAPT 352 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V + +D S Y++MP++I Sbjct: 353 TPVVLAPQDDSS---------FTYLVMPVQI 374 >gi|253997715|ref|YP_003049778.1| DNA polymerase III subunit beta [Methylovorus sp. SIP3-4] gi|253984394|gb|ACT49251.1| DNA polymerase III, beta subunit [Methylovorus sp. SIP3-4] Length = 367 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 206/387 (53%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+ER++T+P+ ++LL+A D + + A+ E++I+ A+ Sbjct: 1 MNIKINRDTLLKPLSSVTSIVERRHTLPILSNLLLEAKDEKIVLTATDLEMQISLALQTP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V S T+SA L DI R L + A+I+ + + + G S F LQ+ P +++P Sbjct: 61 VGGELSTTISAKKLLDICRSLPENAEITMATAE---SRIQVKTGKSRFNLQTLPAADYPV 117 Query: 121 TKEEEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + LK L ++ FAMA ++IRYYLNG+ F +N +L V TDG Sbjct: 118 MTKATGTTYTVVTIDQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ ++ AQ + +I+PRK V E++++L + V + ++ +++ + + + Sbjct: 176 HRLSFTSTEL-AQSYEKQELILPRKTVIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y VIP + V+ + A+ R SI+S+ + + +++ L SD L + Sbjct: 235 SKVIDGKFPDYTRVIPVGHKNSFNVDRMTILLAMQRASILSNEKYRGIRMVLGSDSLRLI 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y +DI FN Y++++++N++ D V F +NSS Sbjct: 295 STNSEQEEAEEELEIAYAGDSLDIGFNVTYMIDVLNNVNC-----DSVTFSFADANSSCL 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D ++ YV+MPMRI Sbjct: 350 VTVADDET---------YKYVVMPMRI 367 >gi|312794751|ref|YP_004027673.1| DNA polymerase III, beta chain [Burkholderia rhizoxinica HKI 454] gi|312166526|emb|CBW73529.1| DNA polymerase III, beta chain (EC 2.7.7.7) [Burkholderia rhizoxinica HKI 454] Length = 401 Score = 333 bits (855), Expect = 3e-89, Method: Composition-based stats. Identities = 103/388 (26%), Positives = 197/388 (50%), Gaps = 23/388 (5%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ ER +L L I+ER++T+P+ ++L+ N + ++ E++IT Sbjct: 34 MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLISKNGPDVSFLSTDLELQITTRADF 93 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + + TV+A L DI+R + G + + + G S F LQ+ EF Sbjct: 94 GIGNEQVATTVAARKLVDILRAMPIGDVTLTLSDK----RLTVQSGKSRFALQTLAADEF 149 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + +++ + + K L+ HFAMA ++IRYYLNG+ ++ + +L AVATD Sbjct: 150 PTLAQAKDFGANLSVPQKTFKQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 207 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + + A+ +I+PRK + E+ R+L D + + ++ +++ + + Sbjct: 208 GHRLAFSSMKTDGAFARQE-VIIPRKTILELQRLLEDIDDPLTIDIASTQVKFTFGQVEL 266 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++Q VIP + + L+ ++ R +I++S + + V+ ++ +L + Sbjct: 267 VSKLVEGKFPDFQRVIPKGHKNTFMIGRDELQHSLQRAAILTSDKFKGVRCIVAPGQLKI 326 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A E + + Y +D+ FN YLL+++ N+ D + +V + SS Sbjct: 327 MSTNADQEEAQEELEIAYQGDTLDVGFNVTYLLDVLANLKVDMI---QVALG-SDATSSA 382 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + YV+MPMRI Sbjct: 383 LITIPENEQ---------FKYVVMPMRI 401 >gi|253995376|ref|YP_003047440.1| DNA polymerase III subunit beta [Methylotenera mobilis JLW8] gi|253982055|gb|ACT46913.1| DNA polymerase III, beta subunit [Methylotenera mobilis JLW8] Length = 366 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 109/386 (28%), Positives = 206/386 (53%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + R +L+ L I+E+++T+P+ ++LL+A + + A+ E++I+ ++ ++ Sbjct: 1 MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSVDSA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S T+SA L DI R L D + I+ + + + + G S F LQ+ P +++P Sbjct: 61 TSNDFSTTISAKKLLDICRSLPDNSDINMATND---SRITVKAGKSRFNLQTLPAADYPV 117 Query: 121 TKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + LK L+++ FAMA ++IRYYLNG+ + +L V TDGH Sbjct: 118 MTKTQSQGTVITIPQRQLKELLKQVEFAMAQQDIRYYLNGLLVEVVAN--RLNIVGTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ ++ K +I+PRK V E++++L + V V ++ ++++ + ++ + Sbjct: 176 RLSFTSTELKENYEKQ-DVILPRKTVIELIKLLDDSEEDVNVEIANNQVNFSFGNIRLIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG+FP+Y VIP + + A+ R SI+S+ + + +++ LS++ L + Sbjct: 235 KVIDGKFPDYNRVIPTGHQNTFTTERLGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D +A E + + Y +DI FN YL+++++N +S ++V F +NSS I Sbjct: 295 TNSDQEEAEEELEIAYGSDALDIGFNVTYLIDVLNNTNS-----EQVTFSFADANSSCLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 N + YV+MPMRI Sbjct: 350 TLP---------NNPDYKYVVMPMRI 366 >gi|264676138|ref|YP_003276044.1| DNA polymerase III subunit beta [Comamonas testosteroni CNB-2] gi|299530929|ref|ZP_07044343.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44] gi|262206650|gb|ACY30748.1| DNA polymerase III, beta subunit [Comamonas testosteroni CNB-2] gi|298721150|gb|EFI62093.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44] Length = 373 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 110/389 (28%), Positives = 198/389 (50%), Gaps = 25/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + T+ A L DI++ + +S + +++ + G S F LQ+ P +FP Sbjct: 64 AGDFTTTIGARKLIDILKTMPGDQTVSLETQ---QSKMILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + +F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHR Sbjct: 121 QESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + ++ +I+PRK V E+ R+LS +++ + ++ + Sbjct: 179 LAWASATLDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGME 238 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+LS+ L Sbjct: 239 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLR 298 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A++ +++ Y ++I FN YL++++ N+S D V L NSS Sbjct: 299 VASNNAEQEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMS-----QDMVKIDLQDGNSS 353 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S YV+MPMRI Sbjct: 354 ALVTIPENES---------FKYVVMPMRI 373 >gi|221069746|ref|ZP_03545851.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1] gi|220714769|gb|EED70137.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1] Length = 373 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 110/389 (28%), Positives = 197/389 (50%), Gaps = 25/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + T+ A L DI++ + +S + ++ + G S F LQ+ P +FP Sbjct: 64 AGDFTTTIGARKLIDILKTMPGDQTVSLETQ---QAKMILKGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + +F + VLK+L+ + FAMA ++IRYYLNGI F L L VATDGHR Sbjct: 121 QESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + ++ +I+PRK V E+ R+LS +++ + ++ + Sbjct: 179 LAWASATLDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGME 238 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+LS+ L Sbjct: 239 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLR 298 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A++ +++ Y ++I FN YL++++ N+S D V L NSS Sbjct: 299 VASNNAEQEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMS-----QDMVKIDLQDGNSS 353 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S YV+MPMRI Sbjct: 354 ALVTIPENES---------FKYVVMPMRI 373 >gi|300781939|ref|YP_003762230.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] gi|299791453|gb|ADJ41828.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] Length = 377 Score = 332 bits (853), Expect = 4e-89, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 172/392 (43%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA----NDGLLEIKASGPEIEITGA 56 MKI VER + + + R + + +PV VLL A L + E+ T Sbjct: 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGSDGETDALTVSGFDYEVSATVG 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +PA++ G + VS LL DI + L G I+ G + F L + P Sbjct: 61 VPATIADGGRLLVSGRLLADITKALPAQPVEISVD----GARATITCGTARFSLPTMPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + ++ ELA V + A ++ L G+ I+ L L VAT Sbjct: 117 DYPQLPS-QPAFAGELAGDAFGQAVTQVVVAAGKDDTLPMLTGMRLEISGSSLTL--VAT 173 Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIE 233 D RLA+ E A+ +++VP + + E + L + ++++++L E + L+ Sbjct: 174 DRFRLAMREFTWQPAEGLADAAVLVPARTLAEAAKTLGASGATIRLALASGEGLLGLSGS 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP Y+ ++P S+ ++ + L +++ RVS+++ R V+L + Sbjct: 234 GRYTTTRLLDAEFPPYRQLLPASHSSRAVIDVSALTESIKRVSLVA-ERGTQVRLEFGDN 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D G A E + V Y P+ I FN YL++ + + S D + Sbjct: 293 TLRLSAGGDDEGSAEEELQVEYEGEPVTIAFNPGYLVDGLGALHS-----DRAELTFTTP 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N I+ D + Y+LMP+R+ Sbjct: 348 NRPALIKPADAEGNVVP----GYLYLLMPVRL 375 >gi|222053119|ref|YP_002535481.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32] gi|221562408|gb|ACM18380.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32] Length = 372 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 111/389 (28%), Positives = 211/389 (54%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + + L I+E++NT+P+ + L++A++GLL I A+ E+ + + P + Sbjct: 1 MEFSISKETFTKALQKIQGIVEKRNTMPILSNALIEASNGLLHITATDLEVGMKSSYPVT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G ITV+A +Y+I+++L D KEN+ + I G ++F + EFP Sbjct: 61 IAKEGKITVAAKKIYEIIKELSDEEITFSTKEND---WIEIHCGKAHFNIVGLSPDEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + L+++ L ++E+T +A+ T+E ++ LNGIF E+ + + VATDG Sbjct: 118 FPKVNDNIFVNLSNNFLSEMIEKTSYAICTDESKFNLNGIFIKAASEEGRNVIRMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL+V + I+ S +I P+K + E+ +I + + + ++ + ++ Sbjct: 178 HRLSVTNKEFEGAISNELSKGVIFPKKGIYELKKIAEEESGDIMMGFMDNSAVIKKDNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDGEFP+Y VIP +NDK++ V+ L ++ R++I+SS + + +KL + S + Sbjct: 238 IVMRLIDGEFPDYTKVIPANNDKKVTVSREALLHSLRRMAILSSEKFKGIKLDVRSGSIE 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G A E V Y+ P+ + FN +YL++++ + DD+V L S Sbjct: 298 ISSSNPELGDAREEQEVLYDGTPLSVRFNARYLIDVLTVLR-----DDQVELDLRDELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ KD + V+MPMR+ Sbjct: 353 IIMKPIAKD---------DFMSVIMPMRL 372 >gi|88798538|ref|ZP_01114122.1| DNA polymerase III subunit beta [Reinekea sp. MED297] gi|88778638|gb|EAR09829.1| DNA polymerase III subunit beta [Reinekea sp. MED297] Length = 369 Score = 332 bits (852), Expect = 5e-89, Method: Composition-based stats. Identities = 118/386 (30%), Positives = 215/386 (55%), Gaps = 21/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + ++ R +L+ L ++E++ T+PV +VLL+ L + + E+E+ G + S Sbjct: 3 QFSLAREQLLKPLQLVSGVVEKRQTLPVLSNVLLEVEGNQLALTGTDLEVELIGRVELSE 62 Query: 62 -DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ITV A DIVR L + A IS + + V ++ G S F L S P +EFP+ Sbjct: 63 PASDGAITVPAKKFLDIVRSLPEDAIISLQQTED---RVQVASGRSKFTLSSLPATEFPN 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + L ++L L++ T FAMA +++RYYLNG+ +N+ ++ V+TDGHR Sbjct: 120 IEQDENAQEYRLPQNLLSQLIDATAFAMAQQDVRYYLNGMSVELNQSLVR--TVSTDGHR 177 Query: 181 LAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA++ + + + +IVPRK + E+ R+LS D V++ + + + + + + Sbjct: 178 LAMSSRHVDGLNVPERKQVIVPRKGILELNRLLSDDDQPVQLYIGSTHLRTTTDEFTFTT 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG+FP+Y+ VIP DKE+ + ++ R +I+++ + + V++SLS L + Sbjct: 238 KLVDGKFPDYERVIPRGGDKEVVGDRQVMKAIFSRAAILANEKYRGVRMSLSEGSLVVKA 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A ++ V Y+ +++ FN YLL++++ I ++V F L +NSS + Sbjct: 298 NNPEQEEAEVAVEVDYSGPELEVGFNVSYLLDVMNVIRG-----EQVRFVLADANSSALL 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS + YV+MPMR+ Sbjct: 353 TDFDDDS---------SMYVVMPMRL 369 >gi|148262087|ref|YP_001228793.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4] gi|146395587|gb|ABQ24220.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4] Length = 372 Score = 332 bits (852), Expect = 6e-89, Method: Composition-based stats. Identities = 109/389 (28%), Positives = 207/389 (53%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + + L I+E++NT+P+ + L++A++ L I A+ E+ + + P + Sbjct: 1 MEFRVAKDTFTKALQKIQGIVEKRNTMPILSNTLIEAHNDTLYITATDLEVGMKSSYPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ITVSA +Y+I+++L D + KEN+ V I G ++F + EFP Sbjct: 61 VIKEGKITVSAKKIYEIIKELSDEEIVFSTKEND---WVEIHCGKAHFNIVGLSPDEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + L + +L ++E+T +A+ +E ++ LNGIF E+ + L VATDG Sbjct: 118 FPKINDNSFITLNNQILSEMIEKTSYAICNDETKFNLNGIFIKATTENERNVLRMVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL+V E ++ I+ + +I P+K + E+ ++ + + + ++ + + Sbjct: 178 HRLSVTEKELSGNISNELNKGVIFPKKGIFELKKMTEEEIGDIMLGFMDNSAVIKKGNTV 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDGEFP+Y VIP +NDK +++ +L ++ R++I+SS + + +KL + + + Sbjct: 238 IVMRLIDGEFPDYTKVIPTNNDKIIKILRESLLHSLRRMAILSSEKFKGIKLDVRNGSVE 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP++G A E + V Y P+ + FN +YL++++ + +DEV L S Sbjct: 298 ISSSNPELGDAREELEVDYQGEPLSVRFNARYLIDVLTILK-----EDEVELNLRDELSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ K + V+MPMR+ Sbjct: 353 IIMKPA---------AKNDFMSVIMPMRL 372 >gi|114778881|ref|ZP_01453678.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1] gi|114550850|gb|EAU53416.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1] Length = 366 Score = 331 bits (850), Expect = 9e-89, Method: Composition-based stats. Identities = 125/385 (32%), Positives = 204/385 (52%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+ R+ +L+L+ I+E+++TIP+ +VL++AN + + A+ E+ I I S Sbjct: 1 MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHIDGS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVSA L++I+R+L +S N ++I G S F + + P E+P+ Sbjct: 61 VEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGF---ISIVSGSSRFRVNTRPADEYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+E L + L +++ T FAM+T+E R YL G F + ++ L V TDGHR Sbjct: 118 MAEQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFEL-DDSQNLRLVTTDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA++E+ + Q A S IVP+KAV EI ++ V++ +SE +I L S +++ + Sbjct: 177 LALSEIRL-QQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID FP YQ+VIP +N R+ T Q + R I+++ ++L S L ++ Sbjct: 236 LIDARFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + ++ E + Y + I FN +YL + + I + V L S V IR Sbjct: 296 NSEQEESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRAPS-----VCMELKDELSPVLIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G+D + + YV+MPMRI Sbjct: 351 GEDDEQ---------SRYVIMPMRI 366 >gi|319945019|ref|ZP_08019281.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis ATCC 51599] gi|319741589|gb|EFV94014.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis ATCC 51599] Length = 384 Score = 331 bits (850), Expect = 1e-88, Method: Composition-based stats. Identities = 117/405 (28%), Positives = 196/405 (48%), Gaps = 41/405 (10%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+I R +L+ L IIE+++T P+ +VL++ + + EI++ Sbjct: 1 MQIIHAPRDAVLKPLQTVAGIIEKRHTQPILANVLIRQQGEAVTFTGTDMEIQVRTQASI 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + TVSA L DI+R L D + G ++N+ S F LQ+ P +F Sbjct: 61 GAGSGTTATTVSAKKLIDILRALPD----TDVTIELNGNKLNLKTTRSRFALQTLPSEDF 116 Query: 119 PSTKEEEYVYS------------------FELASSVLKNLVERTHFAMATEEIRYYLNGI 160 P K + L+ L++L++ HFAMA ++IR+YLNG+ Sbjct: 117 PVMKAGATDQAGPGSGSAGDGSTADLRADVTLSQKKLRHLLQMVHFAMAQQDIRFYLNGL 176 Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 ++ ++ AVAT+GHRLA D+ A I+PRK+V E+LR+L D V+ Sbjct: 177 LLVLSPAGMR--AVATEGHRLAF-CEDVEVHAAGQADAILPRKSVLELLRLLGDSDEPVR 233 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + +++ L + +L++G+FP+YQ VIP K + + L QA+ R SI+S+ Sbjct: 234 MEIIGTQVRLRFGDIEFISKLLEGKFPDYQRVIPKGYQKVIELERETLAQALQRASILSN 293 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + V+L L+ +L + N + +A E +++ Y P+DI FN YLL+++ + + Sbjct: 294 EKFRGVRLGLAPGRLGIQSSNTEQEEASEEIDIDYGGAPLDIGFNVSYLLDVLGTLKT-- 351 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D V + SS + +S YVLMPMRI Sbjct: 352 ---DRVTMAFGDATSSALLTLPGDES---------FRYVLMPMRI 384 >gi|163854306|ref|YP_001628604.1| DNA polymerase III subunit beta [Bordetella petrii DSM 12804] gi|163258034|emb|CAP40333.1| DNA polymerase III, beta chain [Bordetella petrii] Length = 369 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 203/388 (52%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 1 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D ++ N ++++ S F LQ+ SEF Sbjct: 61 GVGQDNESTTVAARKLLDILKALPDTGEVKLGLAN---NKLSVQSAKSRFALQTLAASEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S L L++L+ HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 118 PTVAQPEKWDVSLSLPQRTLRHLLNMVHFAMAQQDIRYYLNGMLLVFEAGCVR--AVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA I + +IVPRK V E+ R+L D V V ++ +I + + Sbjct: 176 GHRLAH-CATAADGITERHEVIVPRKTVLEMQRLLEDSDEPVAVDVAPGQIRFRFGDVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRQFVVSREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y P+D+ FN YLL+++ N+ ++ + + +N+S Sbjct: 295 SSSNAEQEEAQEELDIDYGHEPLDVGFNVSYLLDVLANVKTENIQWS----VMPDANASA 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D YV+MPMRI Sbjct: 351 LLTLPDDDQ---------FKYVVMPMRI 369 >gi|33591699|ref|NP_879343.1| DNA polymerase III subunit beta [Bordetella pertussis Tohama I] gi|33571342|emb|CAE44819.1| DNA polymerase iii, beta chain [Bordetella pertussis Tohama I] gi|332381118|gb|AEE65965.1| DNA polymerase III subunit beta [Bordetella pertussis CS] Length = 369 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 1 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D ++ ++++ S F LQ+ SEF Sbjct: 61 GVGPENESTTVAARKLLDILKALPDTGEVKL---GLASNKLSVQSAKSRFALQTLAASEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S + +L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 118 PTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 176 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ ++ + Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y+ P+D+ FN YLL+++ NI ++ V + +N+S Sbjct: 295 SSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWS----VMPDANASA 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 351 LITLPDDEQ---------FKYVVMPMRI 369 >gi|124265195|ref|YP_001019199.1| DNA polymerase III subunit beta [Methylibium petroleiphilum PM1] gi|124257970|gb|ABM92964.1| DNA polymerase III, beta subunit [Methylibium petroleiphilum PM1] Length = 368 Score = 331 bits (849), Expect = 1e-88, Method: Composition-based stats. Identities = 111/385 (28%), Positives = 195/385 (50%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + L L I+ER++T+PV +VL++ +E S EI++ D Sbjct: 4 LKSPQEKFLGALQAVAGIVERRHTLPVLANVLMRKTGNAIEFTTSDLEIQVRTQAEFDGD 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 S TV A L DI+R L ++ ++ ++ G S F LQ+ P +FP Sbjct: 64 AGNFSTTVGARKLIDILRTLPADQNVTLSS---AQNKLTLTGGKSRFTLQTLPAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E ++ +F + LK L+ + HFAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAADFGPAFSVPQKSLKALIAQVHFAMAVHDIRYYLNGILFVAEGKSLTL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+A+ + ++ K +I+PRK V E+ R+L +D+++++ + ++ + + Sbjct: 179 LALAQATLDVEMPKQE-VILPRKTVLELQRLLKDEDTAIEMRFAGNQAKFAFSGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+L+ L + Sbjct: 238 LVEGKFPDYNRVIPKNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRLNFDPGTLRIASS 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y ++I FN YL++++ N+ + V L SNSS + Sbjct: 298 NAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANMG-----QEMVTLSLQDSNSSALVT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ YV+MPMRI Sbjct: 353 VPEQ---------GGFKYVVMPMRI 368 >gi|157690800|ref|YP_001485262.1| DNA polymerase III subunit beta [Bacillus pumilus SAFR-032] gi|157679558|gb|ABV60702.1| DNA-directed DNA polymerase III beta subunit [Bacillus pumilus SAFR-032] Length = 421 Score = 331 bits (848), Expect = 1e-88, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 192/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + + S +I I IP Sbjct: 44 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPQR 103 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL ++N L I G + F L Sbjct: 104 DGDLEVITIDRPGSIVLQARFFSEIVKKLPMATVEIEVEQNHLTI---IRSGSAEFNLNG 160 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++F++ + +LKNL+ +T FA++T E R L G+ + + E +L Sbjct: 161 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKV--EKGELI 218 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ RIL V + ++E+++ Sbjct: 219 CTATDSHRLALRKAKLDIDEESSYNVVIPGKSLTELSRILDDGQDLVSIVITETQVLFKA 278 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 279 QNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLSAD 338 Query: 292 SDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ L ++ ++P++GK +E++ + I F+ KY+L+ + + E+ Sbjct: 339 PEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGT-----EIHVS 393 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R + DS +++P+R Sbjct: 394 FTGAMRPFLLRTPNDDSI---------LQLILPVR 419 >gi|182412775|ref|YP_001817841.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1] gi|177839989|gb|ACB74241.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1] Length = 374 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 107/395 (27%), Positives = 193/395 (48%), Gaps = 32/395 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R L ++ K T+P+ +VL++A + + + ++ I I A Sbjct: 1 MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++T+ L IVR+L + + + +V ++ G SNF + + EFP Sbjct: 61 VKETGAVTLPVKRLATIVRELPN---VDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF L S L ++++ +A +T+E RY LNG++F+ D KL VATDG R Sbjct: 118 LPEFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYFNFK--DGKLSLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232 LA+ ++ +II+P K V E++R+L K +K++ ++ R I Sbjct: 176 LALVSKELEVPADSAGAIILPAKTVSELMRLL-DKGEKLKINFNDRRAAFQIATDKDSSG 234 Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ES+ + ++++G +PNYQ V+P + +++ Q V R +++ S + +VK+ L Sbjct: 235 LVESVYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIKL 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 SS+ L +T +PD G+A ESM + Y+ + + FN ++++ + + DE+ F L Sbjct: 295 SSNLLEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRAL-----TKDEIFFEL 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + D + V+MP+R+ Sbjct: 350 KDDVSPGVFKTLD-----------SFLCVIMPVRL 373 >gi|33603962|ref|NP_891522.1| DNA polymerase III subunit beta [Bordetella bronchiseptica RB50] gi|33568938|emb|CAE35352.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica RB50] Length = 371 Score = 331 bits (848), Expect = 2e-88, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 3 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D ++ ++++ S F LQ+ SEF Sbjct: 63 GVGPENESTTVAARKLLDILKALPDTGEVKL---GLASNKLSVQSAKSRFALQTLAASEF 119 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S + +L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 120 PTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 178 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ ++ + Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y+ P+D+ FN YLL+++ NI ++ V + +N+S Sbjct: 297 SSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWS----VMPDANASA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 353 LITLPDDEQ---------FKYVVMPMRI 371 >gi|71905644|ref|YP_283231.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB] gi|71845265|gb|AAZ44761.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB] Length = 368 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 119/385 (30%), Positives = 214/385 (55%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASV 61 I +R +L L I+ER++T+P+ +VLL+ L + A+ EI+IT + A Sbjct: 4 IKTQRDTLLAPLQSVSGIVERRHTLPILSNVLLEKKGDRLTLLATDIEIQITTSTECAGG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G++TV A + +I+R L D +++S E++ + + G S F LQ+ P +FP Sbjct: 64 EGDGAVTVGARKMQEILRSLPDTSEVSLVLEDK---RLQVRAGKSRFSLQTLPADDFPRM 120 Query: 122 KEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F ++ + L+ +T ++MA +++RYYLNG+ + ++L+ AVATDGHR Sbjct: 121 TMSEGETKQFSISQKAFRQLISKTQYSMAAQDVRYYLNGLLLLVEGKELR--AVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A V+I + + +I+PRK V E+ R+L D + ++L+ +++ + S+ + + Sbjct: 179 LAYASVEIDTDLPRQE-MILPRKTVLELNRLLVDTDDLLNITLTPNQVRFSFGSVVLVSK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ V+P + ++V L QA+ R +I+++ + + V++ L + L + Sbjct: 238 LIDGKFPDYERVVPATLKNHMKVGRQTLMQAMQRAAILTNEKFRGVRVVLGDNSLKLIAA 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A+E + V Y +D+ FN YLL++++NI + DE+ + + +NSS I Sbjct: 298 NAEQEEAVEEIEVDYTGDVIDVGFNVGYLLDVLNNIHA-----DEIQWSFNDANSSALIT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D YV+MPMRI Sbjct: 353 LPGND---------RFKYVVMPMRI 368 >gi|169627110|ref|YP_001700759.1| DNA polymerase III subunit beta [Mycobacterium abscessus ATCC 19977] gi|169239077|emb|CAM60105.1| DNA polymerase III, beta subunit (DnaN) [Mycobacterium abscessus] Length = 399 Score = 330 bits (847), Expect = 2e-88, Method: Composition-based stats. Identities = 101/398 (25%), Positives = 180/398 (45%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R D + + R + + T+PV VLL A+D L + E+ +PA V Sbjct: 14 KFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGFDYEVSAQVKVPAEV 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+ VS LL DI R L + + GT + IS G + F L S P ++P+ Sbjct: 74 AAAGNALVSGRLLSDITRSLPNKPVDVALE----GTRLLISCGSAKFSLPSMPVEDYPAL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + V + + A ++ L GI IN + + L ATD RL Sbjct: 130 PSLPEE-TGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEINGDTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSL-------SESRIHLNIE 233 AV E++ + + +++VP K + E + SS S V+++L SE + + + Sbjct: 187 AVRELNWTSGSGETSAAVLVPAKTLSEAAKSASSG-SDVQLALGAGSAIGSEGLLGIVSD 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + + L +A+ RV++++ R ++L Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPTEHTALATIAISELVEAIKRVALVA-DRGAQIRLEFEPG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + ++ S+ V F + Sbjct: 305 LLRLSAGADDVGRAEEELEVEFVGEPLTIAFNPTYLTDGLGSLHSN-----RVTFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 + +R D D + + + + Y+LMP+R+ Sbjct: 360 SRPAVLRPADDDQSSPEGSGPFTAAQTDYVYLLMPVRL 397 Score = 44.1 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 29/191 (15%), Positives = 76/191 (39%), Gaps = 16/191 (8%) Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + S + F +A + V ++ + L G+ ++ L L Sbjct: 2 DLASPTAADTSLKFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGF-- 59 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D A +V + A++A + +V + + +I R L +K V V+L +R+ ++ S Sbjct: 60 DYEVSA--QVKVPAEVAAAGNALVSGRLLSDITRSLPNK--PVDVALEGTRLLISCGSAK 115 Query: 237 MSVR-LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSL 290 S+ + ++P +P ++ + +A+ +V++ + +++ + Sbjct: 116 FSLPSMPVEDYPA----LPSLPEETGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEI 171 Query: 291 SSDKLCMTVDN 301 + D + + + Sbjct: 172 NGDTVVLAATD 182 >gi|317401671|gb|EFV82296.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54] Length = 371 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 199/388 (51%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 3 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D + ++++ S F LQ+ SEF Sbjct: 63 GVGHDNESTTVAARKLLDILKALPDTGDVRLAL---ASNKLSVQSAKSRFALQTLAASEF 119 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S + L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 120 PTVAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + I++ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 178 GHRLAHCSTEADG-ISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + V L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y P+D+ FN YLL+++ N+ D + + +N+S Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEPLDVGFNVGYLLDVLSNVKVDNIQWS----VMPDANASA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 353 LITLPEDDQ---------FKYVVMPMRI 371 >gi|311103226|ref|YP_003976079.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans A8] gi|310757915|gb|ADP13364.1| DNA polymerase III, beta subunit [Achromobacter xylosoxidans A8] Length = 369 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 199/388 (51%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 1 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D + ++++ S F LQ+ SEF Sbjct: 61 GVGQDNESTTVAARKLLDILKALPDTGDVRLAL---ASNKLSVQSAKSRFALQTLAASEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S + L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 118 PTVAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + I++ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 176 GHRLAHCSTEADG-ISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + VN L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRHFLVNREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y +D+ FN YLL+++ N+ D + + +N+S Sbjct: 295 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDNIQWS----VMPDANASA 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 LITLPEDDQ---------FKYVVMPMRI 369 >gi|121607006|ref|YP_994813.1| DNA polymerase III subunit beta [Verminephrobacter eiseniae EF01-2] gi|121551646|gb|ABM55795.1| DNA polymerase III, beta subunit [Verminephrobacter eiseniae EF01-2] Length = 372 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 111/389 (28%), Positives = 188/389 (48%), Gaps = 26/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 4 LKATQDKVLAALQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 T+S L DI+R + +S + + + + G S F L S P +FP Sbjct: 64 TGECMTTMSVRKLIDILRTMPGEQTVSLESD---QSRLILKAGKSRFTLHSLPGQDFPLV 120 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + LK+L+ + F MA ++IRYYLNGI F E L +ATDGHR Sbjct: 121 QESAAFGPVFSVPQKTLKSLLGQVSFTMAVQDIRYYLNGILFV--AEGQTLSLIATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236 LA A + Q+ K +I+PRK V E+ R+LS D +++ + ++ + Sbjct: 179 LAFACATLDVQVPKQE-VILPRKTVLELQRLLSDADGDNRPHIEMQFASNQAKFTFGGME 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++G+FP+Y VIP ++ + + L ++ R +IM+S + + V+L+L L Sbjct: 238 FVTKLVEGKFPDYNRVIPKNHHNCVTLGRAALLTSLQRTAIMTSDKFKGVRLNLEPGALR 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N + +A++ ++V Y ++I FN YL++ + N+ D V NSS Sbjct: 298 VASSNAEQEEAVDELDVDYAGDNIEIGFNVTYLIDALANME-----QDMVQLAFADGNSS 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D N YV+MPMRI Sbjct: 353 ALLTIPAND---------NFKYVVMPMRI 372 >gi|145221420|ref|YP_001132098.1| DNA polymerase III subunit beta [Mycobacterium gilvum PYR-GCK] gi|315441698|ref|YP_004074577.1| DNA polymerase III subunit beta [Mycobacterium sp. Spyr1] gi|145213906|gb|ABP43310.1| DNA polymerase III, beta subunit [Mycobacterium gilvum PYR-GCK] gi|315260001|gb|ADT96742.1| DNA polymerase III, beta subunit [Mycobacterium sp. Spyr1] Length = 398 Score = 330 bits (846), Expect = 3e-88, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 173/398 (43%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R D + + R + + T+PV VLL +D L + E+ IPA + Sbjct: 13 KFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIPAEI 72 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + GT V+++ G + F L + ++P+ Sbjct: 73 ASPGSVLVSGRLLSDIVRSLPAKPVDVSVE----GTRVSLTCGSARFSLPTMAVEDYPTL 128 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 ++ + + + A ++ L GI I+ E K+ ATD RL Sbjct: 129 PTLPDETGVV-SADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 185 Query: 182 AVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ +++VP K + E + + + V ++L E + + + Sbjct: 186 AVRELTWSAGAAGVEAAVLVPAKTLAEAAKAGTDG-TEVHLALGQGPTVGKEGLLGIRSK 244 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ + D Sbjct: 245 GKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVA-DRGAQVRMEFADD 303 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V ++ P+ I FN YL + + ++ + + V F + Sbjct: 304 VLRLSAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHA-----ERVTFGFTTP 358 Query: 354 NSSVFIRGKDKD------SKNNKDNKVNAFYVLMPMRI 385 + +R D S + + Y+LMP+R+ Sbjct: 359 SRPAVLRPAGDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396 >gi|295837756|ref|ZP_06824689.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74] gi|295826661|gb|EFG64969.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74] Length = 376 Score = 329 bits (845), Expect = 4e-88, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 171/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VS LL DI R L + + + G ++ G S F L + P E+P+ Sbjct: 61 TEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVTCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + ++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-SATGTVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + +++ ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPEDSEISAVALVPAKTLLDTAKSLTSGD-NVTIALSGSGSGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374 >gi|318058970|ref|ZP_07977693.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actG] gi|318079378|ref|ZP_07986710.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actF] Length = 376 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 171/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VS LL DI R L + + + G ++ G S F L + P E+P+ Sbjct: 61 TEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVTCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + ++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-SATGTVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + A++ ++ +VP K + + + L++ D +V ++LS E I Sbjct: 174 FAVREFLWKPEDAEISAVALVPAKTLLDTAKSLTNGD-NVTIALSGSGSGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374 >gi|33598883|ref|NP_886526.1| DNA polymerase III subunit beta [Bordetella parapertussis 12822] gi|33575013|emb|CAE39679.1| DNA polymerase iii, beta chain [Bordetella parapertussis] Length = 371 Score = 329 bits (844), Expect = 4e-88, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 3 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D ++ ++++ S F LQ+ SEF Sbjct: 63 GVGPENESTTVAARKLLDILKALPDTGEVKL---GLASNKLSVQSAKSRFALQTLAASEF 119 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S + +L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 120 PTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 178 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + ++ V+ L+ ++ R +I+++ + + V+L L+ ++ + Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y+ P+D+ FN YLL+++ NI ++ V + +N+S Sbjct: 297 SSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWS----VMPDANASA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 353 LITLSDDEQ---------FKYVVMPMRI 371 >gi|188590797|ref|YP_001795397.1| DNA polymerase III subunit beta [Cupriavidus taiwanensis LMG 19424] gi|170937691|emb|CAP62675.1| DNA polymerase III, beta-subunit [Cupriavidus taiwanensis LMG 19424] Length = 371 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 121/391 (30%), Positives = 207/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGNDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E E+ S L K+L+ HFAMA ++IRYYLNG+ + + K+ AVATD Sbjct: 117 PTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGK--KVMAVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V++ + A + S +I+PRK + E+ R+L D V V L+ +++ + Sbjct: 175 GHRLAYCGVELENEAAGVGSRQEVIIPRKTILELQRLLEDNDDPVTVQLAANQVKFTFAN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDTHM 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ + ++V L SN Sbjct: 295 LKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKT-----EQVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I D D N YV+MPMRI Sbjct: 350 SSALITVPDDD---------NFKYVVMPMRI 371 >gi|325677519|ref|ZP_08157183.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC 33707] gi|325551766|gb|EGD21464.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC 33707] Length = 394 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 94/400 (23%), Positives = 173/400 (43%), Gaps = 28/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D + + R + + +PV VLL A++ L + E+ + A Sbjct: 6 MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI R L + GT V I+ G + F L + P ++P Sbjct: 66 VTTTGQVLVSGKLLADITRALPNKPVDVTVD----GTRVLIACGSAKFSLPTMPVEDYPQ 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L + V + A ++ L GI I D+ L ATD R Sbjct: 122 LPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVL--AATDRFR 178 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLN 231 LAV +++ + +++VP + + E + L S V+++L E + + Sbjct: 179 LAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLSPVELALGAGASVGTEGMLGIV 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+D EFP ++ ++P + V L A+ RV++++ R V+L + Sbjct: 239 ADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVA-ERGAQVRLEFN 297 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 S+ L ++ D G+A E++ + P+ I FN YL++ ++++ S + V F Sbjct: 298 SEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTFGFT 352 Query: 352 SSNSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385 + + +R ++ + + + Y+LMP+R+ Sbjct: 353 TPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392 >gi|254445280|ref|ZP_05058756.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium DG1235] gi|198259588|gb|EDY83896.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium DG1235] Length = 380 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 193/399 (48%), Gaps = 34/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R L ++ K T+P+ +VL++A + + + ++ I I A+ Sbjct: 1 MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIKAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++T+ L IV++L + E +V I+ G SNF + EFP+ Sbjct: 61 IEEEGAVTLPVKRLATIVKELPNSDV---KVEASPSNQVKIASGGSNFKIMGISREEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI----NEEDLKLCAVAT 176 E SF + L +++ +A +++E RY LNG+FF+ +L VAT Sbjct: 118 LPEFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI---- 232 DG RLA + ++ S+I+P K V E++R+L K ++K++ ++ R+ I Sbjct: 178 DGRRLAKTDHEMEVGEGMSGSLILPAKTVSELVRLL-DKGENLKIAFNDRRVAFQIHTKD 236 Query: 233 ------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + + ++++G +PNYQ VIP + ++V Q++ R +++++ + V Sbjct: 237 DSDGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSNQV 296 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 K+ +S++ + ++ +PD G++ ES+ + Y+ + + FN ++L++ + + DE+ Sbjct: 297 KIQISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKAL-----TKDEL 351 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 F L S + + + V+MP+R+ Sbjct: 352 FFELKDEVSPGVFKTLE-----------SFLCVIMPVRL 379 >gi|118468117|ref|YP_884424.1| DNA polymerase III subunit beta [Mycobacterium smegmatis str. MC2 155] gi|1706495|sp|P52851|DPO3B_MYCSM RecName: Full=DNA polymerase III subunit beta gi|1321894|emb|CAA63249.1| dnaN [Mycobacterium smegmatis] gi|118169404|gb|ABK70300.1| DNA polymerase III, beta subunit [Mycobacterium smegmatis str. MC2 155] Length = 397 Score = 329 bits (844), Expect = 5e-88, Method: Composition-based stats. Identities = 96/398 (24%), Positives = 173/398 (43%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R D + + R + + TIPV VLL D L I E+ + A + Sbjct: 12 KFRVVREDFADAVAWVARSLPTRPTIPVLAGVLLTGTDEGLTISGFDYEVSAEVKVSAEI 71 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DI + L + GT V+++ G + F L + ++P+ Sbjct: 72 ASAGSVLVSGRLLSDITKALPAKPVEVSVE----GTRVSLTCGSARFSLPTLAVEDYPAL 127 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + +AS + + + A ++ L GI I+ E + L ATD RL Sbjct: 128 PALPEE-TGVIASDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGESVVL--AATDRFRL 184 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ V +++VP K + E + + + V ++L + + + E Sbjct: 185 AVRELTWVTTAGDVEAAVLVPAKTLAEAAKAGTDGN-QVHLALGSGASVGKDGLLGIRSE 243 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ RV++++ R +++ S D Sbjct: 244 GKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVA-DRGAQIRMEFSDD 302 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 303 TLKLSAGADDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLGSLHS-----ERVTFGFTTP 357 Query: 354 NSSVFIRGKDKDSKNN------KDNKVNAFYVLMPMRI 385 + +R +D N K + Y+LMP+R+ Sbjct: 358 SRPAVLRPAGEDDGANGGSGPFPAAKTDYVYLLMPVRL 395 >gi|312137516|ref|YP_004004852.1| DNA polymerase III beta subunit [Rhodococcus equi 103S] gi|311886855|emb|CBH46163.1| DNA polymerase III beta subunit [Rhodococcus equi 103S] Length = 394 Score = 329 bits (843), Expect = 5e-88, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 173/400 (43%), Gaps = 28/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D + + R + + +PV VLL A++ L + E+ + A Sbjct: 6 MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI R L + GT V I+ G + F L + P ++P Sbjct: 66 VTTTGQVLVSGKLLADITRALPNKPVDVTVD----GTRVLIACGSAKFSLPTMPVEDYPQ 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L + V + A ++ L GI I D+ L ATD R Sbjct: 122 LPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVL--AATDRFR 178 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLN 231 LAV +++ + +++VP + + E + L + V+++L E + + Sbjct: 179 LAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLAPVELALGAGASVGTEGMLGIV 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+D EFP ++ ++P + V L A+ RV++++ R V+L + Sbjct: 239 ADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVA-ERGAQVRLEFN 297 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 S+ L ++ D G+A E++ + P+ I FN YL++ ++++ S + V F Sbjct: 298 SEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTFGFT 352 Query: 352 SSNSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385 + + +R ++ + + + Y+LMP+R+ Sbjct: 353 TPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392 >gi|126432615|ref|YP_001068306.1| DNA polymerase III subunit beta [Mycobacterium sp. JLS] gi|126232415|gb|ABN95815.1| DNA polymerase III, beta subunit [Mycobacterium sp. JLS] Length = 398 Score = 328 bits (842), Expect = 7e-88, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 27/397 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R D + + R + + T+PV VLL +D L I E+ + A + Sbjct: 14 KFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFDYEVSAEVRVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DI + L + GT V+++ G + F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDITKALPAKPVDVSVE----GTRVSLTCGSARFSLPTMAVEDYPAL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + + + A ++ L GI I E + L ATD RL Sbjct: 130 PTLPDE-TGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ +++VP K + E + + + V ++L E + + E Sbjct: 187 AVRELTWSTSSPDVEAAVLVPAKTLAEAAKAGTDG-TDVHLALGAGSAVGKEGLLGIRSE 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ + D Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVA-DRGAQVRMEFADD 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V ++ P+ I FN YL + + ++ S + V F + Sbjct: 305 VLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVTFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + +R + + + Y+LMP+R+ Sbjct: 360 SRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 16/191 (8%) Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + T F L + V + T L G+ +++ L + Sbjct: 2 DVVPTTAGHTDLKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGF-- 59 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D A EV + A+IA S++V + + +I + L +K V VS+ +R+ L S Sbjct: 60 DYEVSA--EVRVAAEIASPGSVLVSGRLLSDITKALPAK--PVDVSVEGTRVSLTCGSAR 115 Query: 237 MSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSL 290 S+ + ++P +P D+ + +A+ +V++ + +++ + Sbjct: 116 FSLPTMAVEDYPA----LPTLPDETGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEI 171 Query: 291 SSDKLCMTVDN 301 + + + + + Sbjct: 172 TGESVVLAATD 182 >gi|254246826|ref|ZP_04940147.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184] gi|124871602|gb|EAY63318.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184] Length = 395 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 100/366 (27%), Positives = 187/366 (51%), Gaps = 22/366 (6%) Query: 22 ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYDIVRK 80 ++T+P+ ++L+ N + ++ E++IT V + TV+A L DI+R Sbjct: 50 NARHTLPILANLLITKNGPDVSFLSTDLELQITTRADFGVGGDQIATTVAARKLLDILRA 109 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKN 139 + DG + + + G S F LQ+ EFP+ + +++ + + + Sbjct: 110 MPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEFPTVAQAKDFGATLTVPQKSFRQ 165 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ HFAMA ++IRYYLNG+ ++ + +L AVATDGHRLA + + + +I Sbjct: 166 LLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGHRLAFSSMKLEGGTFGRQEVI 223 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 VPRK + E+ R+L D +V + +++++ + + +L++G+FP++Q VIP ++ Sbjct: 224 VPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKFPDFQRVIPKAHKN 283 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 + L++++ R +I++S + + V+ ++ +L + N D +A E + + Y Sbjct: 284 TFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTNADQEEAQEELEIAYQGDT 343 Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 +DI FN YLL+++ N+ D V L ++SS I + D YV Sbjct: 344 VDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSALITVPENDE---------FKYV 389 Query: 380 LMPMRI 385 +MPMRI Sbjct: 390 VMPMRI 395 >gi|56477035|ref|YP_158624.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1] gi|56313078|emb|CAI07723.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1] Length = 367 Score = 328 bits (842), Expect = 8e-88, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 199/385 (51%), Gaps = 23/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +T R +L L I+E+++T+P+ +VL++ + L + A+ EI+I + Sbjct: 4 LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHGDQLTLLATDIEIQIRTTTAGHIG 63 Query: 63 -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 SITV+A L DI+R + +G + + + G S F LQ+ P +++P Sbjct: 64 GEDASITVAARKLQDILRAVPEGDVTVMLDDK----RLTVKAGRSRFALQTLPAADYPRM 119 Query: 122 KEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F ++ K + + +AMA ++IRYYLNG+ + +L++ VATDGHR Sbjct: 120 NPPDGDATHFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRM--VATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A + + +I+PRK V E+ R L+ + ++V L+ +++ + + + Sbjct: 178 LAFASNPLAGDVPHTE-VILPRKTVMELARQLADSEDPLEVILAGNQVVFRFGPIELVSK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FP+Y+ VIP ++ K L L + RV+I+++ + + V+L L L + Sbjct: 237 LIDGKFPDYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKIVST 296 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A+E + V Y++ P+DI FN YLL++++N V D + +R + NSS + Sbjct: 297 NAEQEEALEELEVDYHDDPLDIGFNVTYLLDVLNN-----VTSDTIEWRFNDGNSSALVT 351 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 YV+MPMRI Sbjct: 352 LP---------GNATFKYVVMPMRI 367 Score = 38.7 bits (89), Expect = 1.7, Method: Composition-based stats. Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 19/243 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +V + L + +++ +LL A+ L + A+ + P + Sbjct: 128 HFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRMVATDGHRLAFASNPLAG 187 Query: 62 DVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 DV + + + ++ R+L D G +V G + + +FP Sbjct: 188 DVPHTEVILPRKTVMELARQLADSEDPLEVI--LAGNQVVFRFGPIEL-VSKLIDGKFP- 243 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN-----GIFFHINEEDLKLCAVA 175 Y + + K L +AT L G+ + + LK+ V+ Sbjct: 244 ------DYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKI--VS 295 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ES 234 T+ + E V I + ++L ++S + + S + + + Sbjct: 296 TNAEQEEALEELEVDYHDDPLDIGFNVTYLLDVLNNVTSDTIEWRFNDGNSSALVTLPGN 355 Query: 235 LSM 237 + Sbjct: 356 ATF 358 >gi|87301552|ref|ZP_01084392.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701] gi|87283769|gb|EAQ75723.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701] Length = 380 Score = 328 bits (841), Expect = 9e-88, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 184/395 (46%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++P Sbjct: 1 MKLVCSQAELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ + L +IV +L + IS E E +V I+ ++ ++ +F Sbjct: 61 ASVESSGTITLPSRLFGEIVARLSSDSPISLSCE-EGQEQVEITSRSGSYQMRGLSAEDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + L L + T FA + +E + L G+ + ++DL+ ATDG Sbjct: 120 PDLPLVQTGTPLRLQPDALVKGLRATLFASSGDEAKQLLTGVHLGLADQDLE--CAATDG 177 Query: 179 HRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNI 232 HRL+V ++ ++ ++ VP +++ E+ R+LS S D V + ++ Sbjct: 178 HRLSVLRLEKAFSGAEDGSEPFAVTVPARSLRELERLLSACSSDDPVSLYCDRGQVVFLW 237 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ R +DG +PNY+ +IP + L ++ QA++RV++++ VKLS Sbjct: 238 ADQVLTSRSLDGTYPNYRQLIPDRFSRTLELDRRGFVQALERVAVLADQHNNVVKLSSDP 297 Query: 293 --DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +L ++ D D+G E + + P++I FN +Y+L+ + + + V R Sbjct: 298 ASGQLHISADAQDVGSGSEDLPAVISGDPIEIAFNVRYMLDGLKAM-----TPERVELRC 352 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + + Y++MP++I Sbjct: 353 NAPTTPAVLTSAQDPT---------FTYLVMPVQI 378 >gi|94308947|ref|YP_582157.1| DNA polymerase III subunit beta [Cupriavidus metallidurans CH34] gi|93352799|gb|ABF06888.1| DNA polymerase III, beta subunit [Cupriavidus metallidurans CH34] Length = 371 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 206/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGSDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E E+ S L K+L+ HFAMA ++IRYYLNG+ ++ + K+ AVATD Sbjct: 117 PTVAEAAEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVATD 174 Query: 178 GHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V++ + + +I+PRK + E+ R+L D V+V L+ +++ + Sbjct: 175 GHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDTDDPVQVQLAANQVKFTFAN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDTHV 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ S ++V L SN Sbjct: 295 LKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I + D N YV+MPMRI Sbjct: 350 SSALITVPEDD---------NFKYVVMPMRI 371 >gi|301631933|ref|XP_002945046.1| PREDICTED: DNA polymerase III subunit beta-like [Xenopus (Silurana) tropicalis] Length = 554 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 198/385 (51%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ ++L++ L+ S EI+I D Sbjct: 190 LKATQDKVLAVLQSVSGIVERRHTLPILANMLIRKTGNALQFTTSDQEIQIRTTAELGGD 249 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 V + TV L DI++ + +S +++ + G S F LQ+ +FP Sbjct: 250 VGDFATTVGVRKLIDILKTMPAEQMVSLES---SQSKLILKGGKSRFTLQTLAAEDFPLV 306 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + VLK L+ + FAMA ++IRY+LNGI F + L L VATDGHR Sbjct: 307 QESPAFGPVFSVPQKVLKGLLNQVSFAMAVQDIRYFLNGILFVAEGKTLSL--VATDGHR 364 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A ++ ++ K +I+PRK V E+ R+LS D ++++ + ++ + + Sbjct: 365 LAFASSELDVEVPKQ-GVILPRKTVLELQRLLSDADGAIEMQFANNQAKFCFGGMEFVTK 423 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L ++ R +IM+S + +AV+L++ L + Sbjct: 424 LVEGKFPDYHRVIPNNHHNSITLGRAPLLTSLQRTAIMTSEKFKAVRLNIEPGTLRVAST 483 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A++ +++ Y +++ FN YLL+++ N+ + V L +NSS + Sbjct: 484 NAEQEEAVDELDIDYGGNSIEVVFNVTYLLDVLANMG-----QEMVKIDLADNNSSALVT 538 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS YV+MPMRI Sbjct: 539 IPENDS---------FKYVVMPMRI 554 >gi|118578451|ref|YP_899701.1| DNA polymerase III subunit beta [Pelobacter propionicus DSM 2379] gi|118501161|gb|ABK97643.1| DNA polymerase III, beta subunit [Pelobacter propionicus DSM 2379] Length = 373 Score = 328 bits (841), Expect = 1e-87, Method: Composition-based stats. Identities = 113/390 (28%), Positives = 204/390 (52%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++ L+ L I+E++ ++P+ +VLL+A + L + A+ E+ + PA Sbjct: 1 MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGMKCIYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G ITV A +Y+IV++L + K+N+ V I G +F + EFP Sbjct: 61 ILSPGRITVGAKKIYEIVKELPNQQISFSAKDND---WVEIRCGKVHFNIVGLSAEEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF--FHINEEDLKL-CAVATD 177 E FE+ S++LK ++E+T +A+ ++ +Y LNG+F IN++D++L VATD Sbjct: 118 FPEVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 GHRL++A + S +I+P+K V E+ +I ++ ++ + Sbjct: 178 GHRLSIASCPFKGNAGQELSKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRGDS 237 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M +RL+DGEFP+Y VIP SND+ + +NC + +V R++I+SS + + + L +S + Sbjct: 238 YMVMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISESSI 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ NP++G A+E ++V Y P + FN +YLL+++ + + V + + Sbjct: 298 RISSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTET-----ESVEMKFKDELA 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS V+MPMR+ Sbjct: 353 PSIILPDKSDS---------FLAVIMPMRL 373 >gi|113866033|ref|YP_724522.1| DNA polymerase III subunit beta [Ralstonia eutropha H16] gi|113524809|emb|CAJ91154.1| DNA polymerase III beta subunit [Ralstonia eutropha H16] Length = 371 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 119/391 (30%), Positives = 205/391 (52%), Gaps = 26/391 (6%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L L I+ER++T+P+ ++L++ + + ++ EI+IT Sbjct: 1 MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R + DG + + + G S F LQ+ EF Sbjct: 61 GVGSDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116 Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ E E+ S L K+L+ HFAMA ++IRYYLNG+ + + K+ AVATD Sbjct: 117 PTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGK--KVMAVATD 174 Query: 178 GHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA V++ + + +I+PRK + E+ R+L D V+V L+ +++ + Sbjct: 175 GHRLAYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTFAN 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP ++ L+QA+ R +I+++ + + V+ L + Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHM 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ N D +A E + + Y+ +DI FN YLL+++ N+ S ++V L SN Sbjct: 295 LKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGDSN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I + D N YV+MPMRI Sbjct: 350 SSALITVPEDD---------NFKYVVMPMRI 371 >gi|161831398|ref|YP_001595902.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331] gi|161763265|gb|ABX78907.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331] Length = 369 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 MK+ + R +L+ L ++ERK T+P+ +VLL L I + E+E+ + Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + +T+ L DI R L D A I +++ E ++ + G S F L + P +F Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E L S ++L+ RTHFAMA +++RYYLNG+ KL A+ATDG Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + II+PRK + E+LR+L ++ + + + I ++ + + Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALAAIRIGNNHIGVSTNDFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FP+ + VIP DK+ ++ L+QA+ R +I+ + + + V+ L L + Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ A E +N+ Y +DI FN Y+L+I++ ++S + +++SSV Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNS-----GNIRLTFSTADSSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + S ++ +V+MPMR+ Sbjct: 351 INEVENPS--------DSAFVVMPMRL 369 >gi|29653366|ref|NP_819058.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493] gi|153209960|ref|ZP_01947547.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165924212|ref|ZP_02220044.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334] gi|212211671|ref|YP_002302607.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212] gi|212217690|ref|YP_002304477.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154] gi|29540628|gb|AAO89572.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493] gi|120575206|gb|EAX31830.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat Q177'] gi|165916346|gb|EDR34950.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334] gi|212010081|gb|ACJ17462.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212] gi|212011952|gb|ACJ19332.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154] Length = 369 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 MK+ + R +L+ L ++ERK T+P+ +VLL L I + E+E+ + Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + +T+ L DI R L D A I +++ E ++ + G S F L + P +F Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E L S ++L+ RTHFAMA +++RYYLNG+ KL A+ATDG Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + II+PRK + E+LR+L ++ + + + I ++ + + Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FP+ + VIP DK+ ++ L+QA+ R +I+ + + + V+ L L + Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ A E +N+ Y +DI FN Y+L+I++ ++S + +++SSV Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNS-----GNIRLTFSTADSSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + S ++ +V+MPMR+ Sbjct: 351 INEVENPS--------DSAFVVMPMRL 369 >gi|332524902|ref|ZP_08401088.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2] gi|332108197|gb|EGJ09421.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2] Length = 369 Score = 327 bits (840), Expect = 1e-87, Method: Composition-based stats. Identities = 111/385 (28%), Positives = 197/385 (51%), Gaps = 21/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +LE L I+ER++T+P+ +VLL+ N ++E+ S EI++ + D Sbjct: 4 LKAAQEKLLEALQSVAGIVERRHTLPILANVLLRKNGPVVELTTSDLEIQVRTSAELGGD 63 Query: 63 VC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI+R L ++ ++ ++ G S F LQS P +FP Sbjct: 64 EGHFATTVGARKLIDILRALPAEQTVTLSS---AQNKLTLAGGKSRFTLQSLPADDFPLV 120 Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ +F + L+ L+ + HF+MA +IRYYLNGI F + L L VATDGHR Sbjct: 121 NEAVDFGPTFSVPQKTLRQLINQVHFSMAVHDIRYYLNGILFIAEGKTLTL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+A+ + + +I+PRK V E+ R+L +++ +++ + ++ L + Sbjct: 179 LALAQGTLETDVPNRQEVILPRKTVLELQRLLKDEETPIEMRFAGNQAKFAFSGLEFVTK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ L V L ++ R +I++S + + V+L+L L + Sbjct: 239 LVEGKFPDYNRVIPRNHKNALVVGRAALLGSLQRAAILTSEKFKGVRLNLEPGVLRIASS 298 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y ++I FN YL++++ N+ + V L +N+S Sbjct: 299 NAEQEEAKEELEIDYAGDTIEIGFNVTYLIDVLANMQ-----QEMVKIELQDTNASALFT 353 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ YV+MPMRI Sbjct: 354 VPEQ---------TGFKYVVMPMRI 369 >gi|194016230|ref|ZP_03054844.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061] gi|194011703|gb|EDW21271.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061] Length = 378 Score = 327 bits (839), Expect = 2e-87, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 191/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + + S +I I I Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFISQR 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL + E E NI G + F L Sbjct: 61 DGDLEVITIDRPGSIVLQARFFSEIVKKLP---MTTVEIEVEQNHLTNIRSGSAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++F++ + +LKNL+ +T FA++T E R L G+ + + E +L Sbjct: 118 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWRV--EKGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ RIL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIDEGSSYNVVIPGKSLTELSRILDDGQDLVSIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ +IP + ++ VN QA+DR S+++ R VKLS Sbjct: 236 QNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLSAD 295 Query: 292 SDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ L ++ ++P++GK +E++ + I F+ KY+L+ + + E+ Sbjct: 296 PEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGT-----EIHVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R + DS +++P+R Sbjct: 351 FTGAMRPFLLRTPNDDSI---------LQLILPVR 376 >gi|313902783|ref|ZP_07836180.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM 13965] gi|313466903|gb|EFR62420.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM 13965] Length = 370 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 192/389 (49%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+++SD+ L A R + + T+ +LL A L + A+ E+ + PA Sbjct: 1 MRLTIDQSDLHAALQVASRAVATRTTLAALSGILLVAEPEQLRLVATDLEMTVEALAPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + L ++VR+L G E + G + S F L + FP+ Sbjct: 61 VQEEGSVILPGRHLAELVRRLPPGEV---QLEVDPGHRARLLQHRSRFTLHGMDPAAFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++V+++++ RT A++T+E R L G+ F + + +L A+ATDG R Sbjct: 118 LPRVGAGSTVLFDNAVMRHVLRRTTMAVSTDESRPILTGVSFRVEGD--RLEALATDGFR 175 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A + V + + P ++P +++ E+ R+L + ++ L +++ + + + Sbjct: 176 IAASRVTLERPVEGQPVDAVIPGRSLAEVARLLPD-EGIGRLILDDTQAGFQLGEVRLIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296 RL++G +P +++P ++V ++A +R +++S R A ++L++ +L Sbjct: 235 RLLEGTYPRVLDLVPSQYPTRVQVPTRAFQEACERAALLSDTRQAARWLIRLTVEPGRLV 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T +P++G+A E + + M I FN +YL++ + I S DEV+F L + Sbjct: 295 VTASDPELGEAREEVPAQVDGEGMTIGFNARYLVDGLKAIDS-----DEVLFELTDPLKA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +RG D + FY+++P++I Sbjct: 350 SRLRGVASD---------DFFYIVLPVKI 369 >gi|302559665|ref|ZP_07312007.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000] gi|302477283|gb|EFL40376.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000] Length = 376 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 165/390 (42%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 TEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + V++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235 AV E + + ++ +VP K + + + L+S D + E I Sbjct: 174 FAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS L Sbjct: 234 RTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 348 PALLSGR---PAVDAEADDAYKYLIMPVRL 374 >gi|108796983|ref|YP_637180.1| DNA polymerase III subunit beta [Mycobacterium sp. MCS] gi|119866067|ref|YP_936019.1| DNA polymerase III subunit beta [Mycobacterium sp. KMS] gi|108767402|gb|ABG06124.1| DNA polymerase III, beta subunit [Mycobacterium sp. MCS] gi|119692156|gb|ABL89229.1| DNA polymerase III, beta subunit [Mycobacterium sp. KMS] Length = 398 Score = 327 bits (838), Expect = 2e-87, Method: Composition-based stats. Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 27/397 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R D + + R + + T+PV VLL +D L I E+ + A + Sbjct: 14 KFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFDYEVSAEVRVVAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DI + L + GT V+++ G + F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDITKALPAKPVDVSVE----GTRVSLTCGSARFSLPTMAVEDYPAL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + + + A ++ L GI I E + L ATD RL Sbjct: 130 PTLPDE-TGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ +++VP K + E + + + V ++L E + + E Sbjct: 187 AVRELTWSTSSPDVEAAVLVPAKTLAEAAKAGTDG-TDVHLALGAGSAVGKEGLLGIRSE 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ RV++++ R V++ + D Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVA-DRGAQVRMEFADD 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V ++ P+ I FN YL + + ++ S + V F + Sbjct: 305 VLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVTFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + +R + + + Y+LMP+R+ Sbjct: 360 SRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 34/192 (17%), Positives = 76/192 (39%), Gaps = 18/192 (9%) Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + T F L + V + T L G+ +++ L + Sbjct: 2 DVVPTTAGHTDLKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTIS---- 57 Query: 177 DGHRLAV-AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 G V AEV +VA+IA S++V + + +I + L +K V VS+ +R+ L S Sbjct: 58 -GFDYEVSAEVRVVAEIASPGSVLVSGRLLSDITKALPAK--PVDVSVEGTRVSLTCGSA 114 Query: 236 SMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLS 289 S+ + ++P +P D+ + +A+ +V++ + +++ Sbjct: 115 RFSLPTMAVEDYPA----LPTLPDETGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVE 170 Query: 290 LSSDKLCMTVDN 301 ++ + + + + Sbjct: 171 ITGESVVLAATD 182 >gi|187479880|ref|YP_787905.1| DNA polymerase III subunit beta [Bordetella avium 197N] gi|115424467|emb|CAJ51021.1| DNA polymerase III, beta chain [Bordetella avium 197N] Length = 371 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 198/388 (51%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 3 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D + ++++ S F LQ+ SEF Sbjct: 63 GVGADNESTTVAARKLLDILKALPDTGDVKLAL---ASNKLSVQSAKSRFALQTLAASEF 119 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S L L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 120 PTVAQPEQWDVSLTLPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 178 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVSLDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + V+ L+ ++ R +I+++ + + V+L L + + + Sbjct: 237 VSKLVEGKFPDFSRVIPTNYTRHFLVSREALQGSLQRAAILTTDKFKGVRLQLGHNVMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y+ +D+ FN YLL+++ N+ + V + +N+S Sbjct: 297 SSSNAEQEEAQEEIDIDYSHEALDVGFNVGYLLDVLANVKVENVEWS----VMPDANASA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D D YV+MPMRI Sbjct: 353 LITLPDDDQ---------FKYVVMPMRI 371 >gi|52078493|ref|YP_077284.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580] gi|52783857|ref|YP_089686.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580] gi|319648519|ref|ZP_08002735.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2] gi|52001704|gb|AAU21646.1| DNA polymerase III (beta subunit) [Bacillus licheniformis ATCC 14580] gi|52346359|gb|AAU38993.1| DnaN [Bacillus licheniformis ATCC 14580] gi|317389598|gb|EFV70409.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2] Length = 378 Score = 326 bits (837), Expect = 3e-87, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 194/395 (49%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL E + I G + F L Sbjct: 61 DGDLEIVTIEQPGSIVLQARFFSEIVKKLPMSTV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 SE+P + E ++F++ + +LKNL+ +T FA++T E R L G+ +++ + L Sbjct: 118 LDASEYPLLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWNVTGGE--LI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDINEDSSYNVVIPGKSLTELSKILDDHQELVDIVITETQVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ +IP + L VN QA+DR S+++ R VKLS + Sbjct: 236 KNVLFFSRLLDGNYPDTNRLIPQESKTNLIVNTKEFLQAIDRASLLAREGRNNVVKLSAA 295 Query: 292 SDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +++ + ++ ++P++GK +E++N + I F+ KY+L+ + + +++ Sbjct: 296 ANESIEISSNSPEIGKVVETVNAEQIEGEDLKISFSPKYMLDALKVLEG-----EDIHVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 FTGAMRPFLIRTPNDDSIVQ---------LILPVR 376 >gi|213622043|ref|ZP_03374826.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 300 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 104/306 (33%), Positives = 175/306 (57%), Gaps = 7/306 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S+ + + V+L +S ++L +T Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294 Query: 300 DNPDMG 305 +NP+ Sbjct: 295 NNPEQE 300 >gi|21222286|ref|NP_628065.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)] gi|256786614|ref|ZP_05525045.1| DNA polymerase III subunit beta [Streptomyces lividans TK24] gi|289770507|ref|ZP_06529885.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] gi|118804|sp|P27903|DPO3B_STRCO RecName: Full=DNA polymerase III subunit beta gi|153241|gb|AAA26735.1| DnaN [Streptomyces coelicolor A3(2)] gi|8247660|emb|CAB92998.1| DNA polymerase III, beta chain [Streptomyces coelicolor A3(2)] gi|289700706|gb|EFD68135.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] Length = 376 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 166/390 (42%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 IEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + V++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPEA-TGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235 AV E + + ++ +VP K + + + L+S D + E I Sbjct: 174 FAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS L Sbjct: 234 RTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 348 PALLSGR---PAVDAEADEAYKYLIMPVRL 374 >gi|225163912|ref|ZP_03726204.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] gi|224801489|gb|EEG19793.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2] Length = 374 Score = 326 bits (836), Expect = 4e-87, Method: Composition-based stats. Identities = 105/395 (26%), Positives = 191/395 (48%), Gaps = 32/395 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R L ++ K T+P+ +VL++A + + + ++ I I A Sbjct: 1 MKFKINRDHFSNGLAQVLNVVGSKATMPILSNVLIEAEKDYISLTTTNLDLGIRCKIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ L IVR+L + + +V ++ G S F + + EFP Sbjct: 61 VKEPGSVTLPVKRLATIVRELPS---VDVAFDGAANHQVKLTSGGSTFKIMGIGKDEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF L+ L +++ +A +T+E RY LNG++F+ D KL VATDG R Sbjct: 118 LPEFGDDRSFNLSQEELTTMLKSVSYAQSTDETRYILNGVYFNFR--DAKLTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232 LA+ ++ +II+P K VGE+LR+L K + +K++ ++ R I Sbjct: 176 LALTSKEMEIPEESAGAIILPAKTVGELLRML-GKGAKIKIAFNDRRASFEISTEGEDTG 234 Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 +S+ + ++++G +PNYQ VIP + +++ + V R +++ S + V++ L Sbjct: 235 LVDSIYLYSKVVEGNYPNYQQVIPKETHQRIKLERELFAECVHRAALVCSDKSNQVRIKL 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S++ L +T +PD G+A ESM + Y+ + + FN ++++ + + DEV F L Sbjct: 295 STNLLEITAQSPDFGEAHESMAIAYSGPDLQVAFNPAFVMDPLKAL-----TKDEVFFEL 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + + + V+MP+R+ Sbjct: 350 KDEVSPGVFKTLE-----------SFICVIMPVRL 373 >gi|42521652|ref|NP_967032.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100] gi|39574182|emb|CAE77686.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100] Length = 368 Score = 326 bits (835), Expect = 4e-87, Method: Composition-based stats. Identities = 115/386 (29%), Positives = 213/386 (55%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +++ D+L L+G I+E++NT+P+ +VLL+A+ L++ A+ E+ +T I Sbjct: 1 MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIKVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VSA L+DI ++L +G KEN + I G + E+P Sbjct: 61 VHQAGKVAVSAKSLFDIAKELSEGPITLIKKEN---NWLEIKQGKYTSKIVGISAEEYPI 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + VLK ++++T ++++T+E RY+LNG+FF +N + VATDGHR Sbjct: 118 FPTYNSQAFIKIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQTG-FKMVATDGHR 176 Query: 181 LAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ +I+PRK + EI +IL S D +V++++ S+ L S + + Sbjct: 177 MSLVNKPSEDIKVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKHSSTILMI 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G++PNYQ IP +++ ++ ++ RVS++++ + +AV L+LS+ ++ ++ Sbjct: 237 RLIEGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGRMEISS 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP++G A E + V Y + I FN KY+ +I+ +++ D++ F L+ S + Sbjct: 297 NNPELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQDKID-----FELNDHLSPGLM 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R N V+MPMRI Sbjct: 352 RP---------HNDQTYTCVVMPMRI 368 >gi|212637851|ref|YP_002314371.1| DNA polymerase III subunit beta [Anoxybacillus flavithermus WK1] gi|212559331|gb|ACJ32386.1| DNA polymerase sliding clamp subunit [Anoxybacillus flavithermus WK1] Length = 378 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 189/395 (47%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R ++ + + + + TIP+ + + A++ + + S +I I IPA Sbjct: 1 MKVIIDREHLVRSVQDVMKAVSSRTTIPILTGIKIVASEQGVTLTGSDSDISIESFIPAE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GS+ + A +IVRKL K+ + T I G + F+L Sbjct: 61 EKDRIIVDVIKQGSVVLQARFFSEIVRKLPKETVQIEVKDQFVTT---IRSGKAEFHLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + + F++ + +LK+++ +T FA++T E R L G+ + I E+ +L Sbjct: 118 LDPEEYPRLPQIQEENMFKVPADLLKHVIRQTVFAVSTSETRPILTGVNWRI--ENNELT 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + + + +I++P K++ E+ +IL + V + ++E++I Sbjct: 176 CIATDSHRLAMRKAKVETESEAYFNIVIPGKSLNELNKILEESNELVHIVVTENQILFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL+DG +P+ +IP + ++ V QA+DR S+++ R V+L +L Sbjct: 236 KHLLFFSRLLDGNYPDTSRLIPTDSQTDVIVKTKEFLQAIDRASLLAREGRNNVVRLSTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK +E + + I F+ KY+++ + + E+ Sbjct: 296 ADKIVEISSNSPEIGKVVEEVQCEQVEGEELKISFSAKYMMDALKALEGT-----EIKIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR DS +++P+R Sbjct: 351 FTGAMRPFLIRPLHDDS---------MLQLILPVR 376 >gi|154706526|ref|YP_001423441.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111] gi|154355812|gb|ABS77274.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111] Length = 369 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 198/387 (51%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58 MK+ + R +L+ L ++ERK T+P+ +VLL L I + E+E+ + Sbjct: 1 MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + +T+ L DI R L D A I +++ E ++ + G S F L + P +F Sbjct: 61 KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + E L S ++L+ RTHFAMA +++RYYLNG+ KL A+ATDG Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA + + II+PRK + E+LR+L ++ + + + I ++ + + Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G FP+ + VIP DK+ ++ L+QA+ R +I+ + + + V L L + Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVCFELRQGLLRIL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 NP+ A E +N+ Y +DI FN Y+L+I++ ++S + +++SSV Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNS-----GNIRLTFSTADSSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + S ++ +V+MPMR+ Sbjct: 351 INEVENPS--------DSAFVVMPMRL 369 >gi|37522801|ref|NP_926178.1| DNA polymerase III subunit beta [Gloeobacter violaceus PCC 7421] gi|35213803|dbj|BAC91173.1| DNA polymerase III beta subunit [Gloeobacter violaceus PCC 7421] Length = 376 Score = 326 bits (835), Expect = 5e-87, Method: Composition-based stats. Identities = 95/393 (24%), Positives = 188/393 (47%), Gaps = 27/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MKI ++ + + L R + + T P+ ++LL+A+ G + + ++ I Sbjct: 1 MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60 Query: 59 AS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 A V+ G T+ A +L DI+ +L + + E+ +++ G S + +Q E Sbjct: 61 AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSEDNA---ISLVCGSSQYQVQGASAEE 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E + L S V+R+ FA +T+E + LNG+ +E ++ VATD Sbjct: 118 FPKLPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEF--VATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES 234 HRL+ D A +I ++P ++V E+ +IL ++ SV+V E ++ + Sbjct: 176 AHRLSFYRTDFTLPEAGTQAIAAVLPVRSVRELEKILGAQAGDSVEVRFDEKQMIFQFPN 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +++ RL+ G +P+YQ ++P + + L ++R+++++ + VKL + + Sbjct: 236 QTLTTRLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSE 295 Query: 295 --LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++VD PD+G+ ES+ V Y+ + FN +YLLE + + + + V F L+ Sbjct: 296 HLMTVSVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATD-----VSFCLNG 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++ N Y++MP+ I Sbjct: 351 ASDPAVLKPV---------GDGNYQYLIMPVSI 374 >gi|293602696|ref|ZP_06685137.1| DNA-directed DNA polymerase III beta subunit [Achromobacter piechaudii ATCC 43553] gi|292818887|gb|EFF77927.1| DNA-directed DNA polymerase III beta subunit [Achromobacter piechaudii ATCC 43553] Length = 371 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 198/388 (51%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L++ + A+ E++IT Sbjct: 3 MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V S TV+A L DI++ L D + ++++ S F LQ+ SEF Sbjct: 63 GVGQDNESTTVAARKLLDILKALPDTGDVRLAL---ASNKLSVQSAKSRFALQTLAASEF 119 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + S + L++L HFAMA ++IRYYLNG+ ++ AVATD Sbjct: 120 PTVAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + IA+ +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 178 GHRLAHCSTEADG-IAERHEVIVPRKTVLEMQRLLEDSDEVVSIDVAPGQIRFRFGDVEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + V L+ ++ R +I+++ + + V+L L+ +++ + Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFMVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y +D+ FN YLL+++ N+ D + + +N+S Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDSIQWS----VMPDANASA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 353 LITLPEDDQ---------FKYVVMPMRI 371 >gi|292490172|ref|YP_003525611.1| DNA polymerase III subunit beta [Nitrosococcus halophilus Nc4] gi|291578767|gb|ADE13224.1| DNA polymerase III, beta subunit [Nitrosococcus halophilus Nc4] Length = 367 Score = 325 bits (834), Expect = 6e-87, Method: Composition-based stats. Identities = 126/386 (32%), Positives = 206/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ER +I+ L C ++ER++T+P+ +VLL + L + A+ E+EI + Sbjct: 1 MQFSIEREEIVRHLATVCGVVERRHTLPILFNVLLSVEEDRLSLTATDLEVEIRTTLEVL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TVSA DI R L A++ E + ++ G S F L + P +FPS Sbjct: 61 HPKGGKTTVSARKFLDICRALPARAELEVQHE---KGQFHVHSGHSRFTLSTLPAEDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T E V EL + LK L+ RT F MA +++RYYL + + + AVATDGHR Sbjct: 118 TDSLEEVVELELTQAELKQLLHRTVFCMAHQDVRYYL--NGLLLELGEETVYAVATDGHR 175 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAVA ++ + I+PRKAV E++R+L + V++ +++ + LS S Sbjct: 176 LAVASLEKGPRREGVQIQSIIPRKAVLELVRLLEESNEPVRLKFGTNQMGAEFQGLSFST 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG+FP+Y+ VIP +K + +QA+ RV+I+++ + + V+L LS+ KL TV Sbjct: 236 KLIDGQFPDYKRVIPVGCEKRFVADREQFKQALGRVNILTNDKYRGVRLHLSNLKLQATV 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + A E + V Y +I FN YL+++++ I++ ++V ++NSS I Sbjct: 296 TNLEQESAEEELEVEYQGESFEIAFNNSYLIDVLNIINT-----EQVKLEFTNANSSCLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V + YV+MPMR+ Sbjct: 351 TPI---------GEVGSKYVVMPMRL 367 >gi|150387855|ref|YP_001317904.1| DNA polymerase III subunit beta [Alkaliphilus metalliredigens QYMF] gi|149947717|gb|ABR46245.1| DNA polymerase III, beta subunit [Alkaliphilus metalliredigens QYMF] Length = 368 Score = 325 bits (833), Expect = 8e-87, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 182/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + ++ + + + K T+P+ + ++ N+ L + + EI I + A Sbjct: 1 MHFSCSQKALMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEHVMEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V A L +I+RKL D KEN ++ I + F + + EFP Sbjct: 61 VLQEGIVVVDARLFSEIIRKLPDAEVDITLKEN---NQLEIKCASTEFNILVYSPDEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +E+A + K ++ +T FA + +E R L G+ I E L VA DG+R Sbjct: 118 LPIVEEDQVYEIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEEN--TLNMVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + I ++VP K + E+ RIL+ ++ + ++L+ + + Sbjct: 176 LALRKGKISGNS--NHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RL++GEF NY+ ++P + ++ + + +++R S+++ R V+ ++ +K+ +T Sbjct: 234 RLLEGEFINYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVIT 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++GK E +N+ ++I FN KY ++ + I D+EV ++ S Sbjct: 294 S-NSELGKVHEEINIVLEGEDIEIAFNSKYFIDALKVID-----DEEVCLEFTTNLSPGI 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + N Y+++P+R+ Sbjct: 348 LKPLANE---------NYTYLVLPVRL 365 >gi|256374162|ref|YP_003097822.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827] gi|255918465|gb|ACU33976.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827] Length = 378 Score = 325 bits (833), Expect = 1e-86, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 172/393 (43%), Gaps = 25/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-----NDGLLEIKASGPEIEITG 55 MKI VER + + + R + + +PV VLL A + L + E+ Sbjct: 1 MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGAEDGSGDALTVSGFDYEVSAQC 60 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 +PA++ G VS LL DI + L + + N G + I+ G + F L + P Sbjct: 61 GVPATISDGGKALVSGKLLADITKALPN----HPVEINVDGARMTITCGSAKFSLPTMPV 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P+ + EL V V + A ++ L G+ I D KL VA Sbjct: 117 EDYPALPSMPQ-LAGELPGEVFGEAVAQVAVAAGKDDTLPMLTGVRLEIA--DGKLVLVA 173 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNI 232 TD RLA+ E + + +++VP K + + + L + + +++SL ++ + L+ Sbjct: 174 TDRFRLAMREFEWTPDETLGDVAVLVPAKTLNDSAKTLGASGAKIELSLAANDGLLGLSG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+D +FP Y+ ++P + ++ L QA+ RVS+++ R V+L Sbjct: 234 NGRRTTTRLLDADFPKYRQLLPSEHSAAAIISVDTLVQAIKRVSLVA-ERGTQVRLEFGD 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ D G A E + V Y P+ I FN YLLE + V + Sbjct: 293 AGLKLSAGGDDEGSAEEELPVDYQGDPVTIAFNPTYLLEGLQA-----VRTPRAHLSFTT 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ ++D + + Y+LMP+R+ Sbjct: 348 PSRPALLKPVNEDGEVAE----GYVYLLMPVRL 376 >gi|329902528|ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] gi|327548756|gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium IMCC9480] Length = 351 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 106/370 (28%), Positives = 195/370 (52%), Gaps = 22/370 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYD 76 I+ER++T+P+ ++L++ + + ++ E++IT I + TV+A L D Sbjct: 2 SGIVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLLD 61 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YVYSFELASS 135 I+R L + +S N+ + + G S F LQ+ EFP+ + E Y L Sbjct: 62 ILRALPESGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQK 118 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 LK+L HF+MA ++IRYYLNG+ ++ ++ + AVATDGHRLA +V+ + + Sbjct: 119 TLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKN--VIAVATDGHRLAFCQVETEQEFTRQ 176 Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 +I+PRK + E+ R+L D V++ ++ +++ L + + +L++G+FP+Y V+P Sbjct: 177 E-VIIPRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPK 235 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 + L +++ R +IM+S + + V+ ++ + ++ N D +++E + + Y Sbjct: 236 GYKNNFTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDY 295 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 +DI FN YLL++++N+ D+V L +NSS I D + Sbjct: 296 GGDSVDIGFNVTYLLDVLNNLKC-----DQVNIALGDANSSALITIPDN---------AD 341 Query: 376 AFYVLMPMRI 385 YV+MPMRI Sbjct: 342 FKYVVMPMRI 351 >gi|111020656|ref|YP_703628.1| DNA polymerase III subunit beta [Rhodococcus jostii RHA1] gi|110820186|gb|ABG95470.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus jostii RHA1] Length = 394 Score = 324 bits (832), Expect = 1e-86, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 28/399 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R + + + R + + +PV VLL A + L + E+ + A V Sbjct: 7 KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAEV 66 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + VS LL DI + L + + GT V I+ G + F L + P ++P Sbjct: 67 GSAGQVLVSGKLLADITKSLPNKPVDVTLE----GTRVLITCGSAKFSLPTMPVEDYPQL 122 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + V + + A ++ L GI I + L ATD RL Sbjct: 123 PQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVL--AATDRFRL 179 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL-SSKDSSVKVSLS-------ESRIHLNI 232 AV E++ ++++P K + E + L S V+++L + + + Sbjct: 180 AVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIVN 239 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL+D EFP ++ ++P + V L +A+ RV++++ R V+L S+ Sbjct: 240 DGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVA-ERGAQVRLQFST 298 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ D G+A E +N + P+ I FN YL++ + ++ S ++V+F + Sbjct: 299 EGLLLSAGGDDAGRAEEGLNAVFQGEPLTIAFNPGYLIDGLSSLHS-----EQVLFGFTT 353 Query: 353 SNSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385 + +R +D D + Y+LMP+R+ Sbjct: 354 PSRPAVLRPATEDEIEPDDSGNFAAPESAYTYLLMPVRL 392 >gi|332286196|ref|YP_004418107.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7] gi|330430149|gb|AEC21483.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7] Length = 369 Score = 324 bits (831), Expect = 1e-86, Method: Composition-based stats. Identities = 119/388 (30%), Positives = 204/388 (52%), Gaps = 22/388 (5%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER+NT+P+ ++LL+ + A+ E++IT Sbjct: 1 MQLVQATRDALLKPLSTVAGIVERRNTLPILANILLRKEGKSVAFIATDLEVQITTHAEF 60 Query: 60 SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V D S TV+A L DI+R L D I +++++ G S F LQ+ +EF Sbjct: 61 GVGDDNESTTVAARKLLDILRALPDSGDIKL---GLASSKLSVQSGKSRFALQTLGATEF 117 Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P+ + E + SF L LK+L HFAMA ++IRYYLNG+ F ++ AVATD Sbjct: 118 PTLAQPEKWDVSFALPQKTLKHLFNMVHFAMAQQDIRYYLNGLLFVFEPGFVR--AVATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA + +V I +IVPRK V E+ R+L D V + ++ +I + + Sbjct: 176 GHRLAHSG-TVVEGIESKHDVIVPRKTVLEMQRLLGDTDEPVSIDVATGQIRFRFGDVEL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L++G+FP++ VIP + + VN L+ ++ R +I+++ +++ V++ LS ++L + Sbjct: 235 VSKLVEGKFPDFTRVIPSNYTRHFSVNREILQGSLQRAAILTTDKLKGVRVQLSDNQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + +A E +++ Y +D+ FN YLL+++ N+ ++ + N+S Sbjct: 295 SSSNAEQEEAQEEIDIDYGHEALDVGFNVSYLLDVLANVKTETIQWS----VQPDVNASA 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D YV+MPMRI Sbjct: 351 LITSPEDDQ---------FKYVVMPMRI 369 >gi|302390799|ref|YP_003826619.1| DNA polymerase III subunit beta [Acetohalobium arabaticum DSM 5501] gi|302202876|gb|ADL11554.1| DNA polymerase III, beta subunit [Acetohalobium arabaticum DSM 5501] Length = 365 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 99/384 (25%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R + + + + I K+T+P+ +L++ + L++ + E+ I + A+ Sbjct: 1 MQIKIDRKNFYDGIQTVRKAISSKSTLPILSGILIETQEKKLKLVGTDLELGIECRVDAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A+ L +IVR+L + K++ ++ IS G S F + P E+P Sbjct: 61 IIKDGAIVLPANHLANIVRELPNKELELELKKD---NKIEISCGLSQFKIHGSPADEYPL 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L+ + ++ R FA + +E R +L G I+ E+LK+ VATD +R Sbjct: 118 LPEVGSGIEYTLSQEKFQAMINRIKFATSDDESRPFLTGGLLSIDNENLKM--VATDSYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA ++++ + K II+P K + E+ ++L+S+D ++ +++++I +++ R Sbjct: 176 LAYTQLELDKDL-KNEKIIIPSKTLNELSKLLNSEDE-IRFLITDNQILFEFSEITIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP ++ E+++ L A R ++++ +K +DKL + + Sbjct: 234 LIEGQFPNYKQVIPDNHKTEIKLKKKELLNATKRSALVARNNSNIIKTKFQNDKLMIESN 293 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 P++G+A E ++ + +I FN YL++++ I ++E++ L S I+ Sbjct: 294 APEVGQAYEELSTSQHGDDTEIAFNANYLIDVLKVID-----NEEILIELSGELSPGVIK 348 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 D D N +V+MP+R Sbjct: 349 EVDND---------NYIHVIMPVR 363 >gi|171056694|ref|YP_001789043.1| DNA polymerase III subunit beta [Leptothrix cholodnii SP-6] gi|170774139|gb|ACB32278.1| DNA polymerase III, beta subunit [Leptothrix cholodnii SP-6] Length = 381 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 113/398 (28%), Positives = 202/398 (50%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L L I+ER++T+P+ +VL++ + G E+ S EI++ A D Sbjct: 4 LKAAQEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGD 63 Query: 63 VC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 S TV A L DI+R L ++ ++ + G S F LQ+ P +FP Sbjct: 64 ESAFSTTVGARKLIDILRMLPSDQIVTLTA---AQNKLTLQGGKSRFTLQTLPADDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E ++ +F + LK+L+++ HFAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QEAADFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-------------KDSSVKVSLSESR 227 LA+A+ + A+I K +I+PRK V E+ R+L ++ +++ ++++ Sbjct: 179 LALAQATLEAEIPKQE-VILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + +L++G+FP+Y VIP ++ + + L ++ R +I++S + + V+ Sbjct: 238 AKFSFGGMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVR 297 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++ L + N + +A E + + Y ++I FN YL++++ N V +D V Sbjct: 298 VNFEPGTLRIASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLAN-----VNEDMVT 352 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L ++SS I + + YV+MPMRI Sbjct: 353 LSLQDASSSALITVPE---------RSGFKYVVMPMRI 381 >gi|89892748|ref|YP_516235.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51] gi|89332196|dbj|BAE81791.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51] Length = 385 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + + + KNT+PV ++++A L +A+ EI I +PA Sbjct: 19 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 78 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + + L D+VRKL D I +N++ +NI + +S+ L+ + EFP Sbjct: 79 VEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDV---INIHYNESDLSLRGYDPEEFPL 134 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F L S+ K ++++T FA + EE R G I + L+L +ATD HR Sbjct: 135 LPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTHR 192 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +I I+P K +GEI R+L +D ++ + ++++I ++ + R Sbjct: 193 LAYRIAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSR 252 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCMT 298 LI+G+FPNY+ VIP S ++ ++ + +V+R S+++ +KLS+ +++L + Sbjct: 253 LIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSID 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++GK E M V + I FN K+LL+++ I S +E+VF L S S Sbjct: 313 -QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYSPGI 366 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR D N Y+ +P+R Sbjct: 367 IRPVDDP---------NYLYLALPVR 383 >gi|254818680|ref|ZP_05223681.1| DNA polymerase III subunit beta [Mycobacterium intracellulare ATCC 13950] Length = 399 Score = 324 bits (830), Expect = 2e-86, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 170/398 (42%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL D L I E+ + A + Sbjct: 14 KFRLVRESFADAVSWVAKNLPSRPAVPVLSGVLLSGTDDGLTISGFDYEVSAEAQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + + G V ++ G++ F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGNARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + A ++ L GI I+ + + L ATD RL Sbjct: 130 PALPDE-TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + +++VP K + E R + + V++SL + + ++ Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARAGADG-AEVRLSLGAGAGVGKDGLLGISGN 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ S Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + + + P+ I FN YL + + ++ S + V F + Sbjct: 305 SLRLSAGADDVGRAEEDLAIDFAGEPLTIAFNPTYLTDGLGSVHS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGK-DKDSKNNKDN-----KVNAFYVLMPMRI 385 +R D DS + Y+LMP+R+ Sbjct: 360 GKPALLRPALDDDSHPTGPGPFSALPTDYVYLLMPVRL 397 >gi|81251093|gb|ABB69891.1| DNA polymerase III beta chain [Nitrosovibrio sp. RY3C] Length = 370 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 24/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I + +L+ L I+ER++T+P+ +VL++ + A+ EI+I P S D Sbjct: 4 IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63 Query: 63 VC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +ITV+A L DI+R L D Q++ + + + G S F LQ+ P +FP Sbjct: 64 ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQE---NRLQVKAGKSRFNLQTLPAEDFP 120 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + L LKNL+ +AMA ++IRYYLNG+ + + LK+ VATDG Sbjct: 121 RLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL A + +++Q + +I+PRKAV E+ + L + V V L ++++ ++ + Sbjct: 179 HRLGFASI-VMSQPQEKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVLV 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP K+ +N Q + R SI+S+ + + V+L L++ L + Sbjct: 238 SKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQIV 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y+ +DI FN YLL++++N++ + V +NSS Sbjct: 298 CSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTC-----ETVQCSFGDANSSAL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 353 ITIPGND---------DFKYVVMPMRI 370 >gi|23006928|ref|ZP_00049021.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 328 Score = 323 bits (829), Expect = 3e-86, Method: Composition-based stats. Identities = 149/329 (45%), Positives = 208/329 (63%), Gaps = 5/329 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TVER+ +L LGH R++ER+NTIP+ +VLL+ + L +KA+ +IE+T +PA Sbjct: 1 MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGEDGLRLKATDLDIEVTETVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV AH++YDIVRKL +GAQ+S + G ++ I G S F L + PE +FP Sbjct: 61 VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGDTG-QMTIRSGRSRFALGALPEGDFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178 E +SF +A++ LK L+E+T FA++TEE RYYLNGI+ H E D LKL AVATDG Sbjct: 120 LAAGELPHSFSIAAAELKLLIEKTQFAISTEETRYYLNGIYLHTVEVDGALKLRAVATDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237 HRLA E MP IIVPRKAV EI +++ SV+V LS ++I L +++ Sbjct: 180 HRLARVETAAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+YQ VIP NDK L V +AVDRVS +SS R +AVKL+++ ++ + Sbjct: 240 ISKLIDGTFPDYQRVIPSGNDKHLTVVRDAFAKAVDRVSTISSERGRAVKLAMADGRVAL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNY 326 +V NPD G E+ + +DI F Sbjct: 300 SVTNPDAGSRTEN-STSITRPWLDIGFKP 327 >gi|302552696|ref|ZP_07305038.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes DSM 40736] gi|302470314|gb|EFL33407.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes DSM 40736] Length = 376 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VDEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D V ++LS E I Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-QVTLALSGSGSGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PALDAEADEAYKYLIMPVRL 374 >gi|219666073|ref|YP_002456508.1| DNA polymerase III subunit beta [Desulfitobacterium hafniense DCB-2] gi|219536333|gb|ACL18072.1| DNA polymerase III, beta subunit [Desulfitobacterium hafniense DCB-2] Length = 367 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + + + KNT+PV ++++A L +A+ EI I +PA Sbjct: 1 MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + + L D+VRKL D I +N++ +NI + +S+ L+ + EFP Sbjct: 61 VEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDV---INIHYNESDLSLRGYDPEEFPL 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F L S+ K ++++T FA + EE R G I + L+L +ATD HR Sbjct: 117 LPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +I I+P K +GEI R+L +D ++ + ++++I ++ + R Sbjct: 175 LAYRIAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCMT 298 LI+G+FPNY+ VIP S ++ ++ + +V+R S+++ +KLS+ +++L + Sbjct: 235 LIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSID 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++GK E M V + I FN K+LL+++ I S +E+VF L S S Sbjct: 295 -QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYSPGI 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR D N Y+ +P+R Sbjct: 349 IRPVDDP---------NYLYLALPVR 365 >gi|116668570|ref|YP_829503.1| DNA polymerase III subunit beta [Arthrobacter sp. FB24] gi|116608679|gb|ABK01403.1| DNA polymerase III, beta subunit [Arthrobacter sp. FB24] Length = 374 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + R + + +PV +LL+A G + + + E IPA Sbjct: 1 MKFRVERDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + V G+I VS LL DI R L G +V ++ S+F+L + PE+E+P Sbjct: 61 ISVEGTILVSGRLLADICRSLPSAP----VDVETDGNKVTLTCRRSSFHLATMPEAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + V + A + ++ L G+ I ++ + L +ATD +R Sbjct: 117 LPALPTI-SGTVPGDSFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237 LA+ EV + S +V K + E+ + L +S D ++ ++ +SR I + Sbjct: 174 LAMREVPWKPVTPGISTSALVKAKTLNEVAKTLGNSGDINLALADDDSRLIGFESGGRTT 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DG++P +++ P + V L +AV RVS+++ R V+L+ + +L + Sbjct: 234 TSLLVDGDYPKIRSLFPDATPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTDGQLHL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E + + + FN YL+E + I + V F ++ Sbjct: 293 DAGTGEDAQASEELEAQLTGDEITVAFNPHYLIEGLSVIETK-----FVRFSFTTAPKPA 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + ++D + Y++MP+R+ Sbjct: 348 MITAQVDADGEDQD---DYRYLVMPVRL 372 >gi|190571329|ref|YP_001975687.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|213018725|ref|ZP_03334533.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] gi|190357601|emb|CAQ55042.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus Pel] gi|212995676|gb|EEB56316.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex quinquefasciatus JHB] Length = 383 Score = 323 bits (828), Expect = 3e-86, Method: Composition-based stats. Identities = 126/384 (32%), Positives = 217/384 (56%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N I V + ++A G +++KA+ +I I ++ A+ Sbjct: 19 MRFSVSRASLLNTLSRVSGVVERRNAIDVLACINIKAQYGSIKLKATDLDISIFASLTAN 78 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ IS G++NF L + + FP Sbjct: 79 VSAEGEVKISAHTLHDIVKKLPTNLDVNFEMNNQ--GKLLISCGNANFSLPNVVSNNFPV 136 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E ++ Y F L S+ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 137 LEEGDHQYDFTLLSADLVDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 194 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK + E+L++L + + + LS+ +I + + Sbjct: 195 LSCIKRPKPEDINGEFGVIIPRKTIMELLKVLDDCNE-INIKLSDRKIKFTCGEYILISK 253 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP S DK++ V + L +DRVS++ S +I+++K SL + L + + Sbjct: 254 LIDGTFPDYKAVIPTSQDKQMIVESSKLASVIDRVSVVVSDKIKSIKFSLQENLLTLHSN 313 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A ES+ V Y+ M++ FN +YLL+++ I ++ F L NS+ I Sbjct: 314 SQECSDATESIEVDYDGALMEVGFNSRYLLDVLSCIE------NKCKFSLSDGNSATIIT 367 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D S A Y++MPMR Sbjct: 368 DEDDPS---------ALYIVMPMR 382 >gi|33864540|ref|NP_896099.1| DNA polymerase III subunit beta [Synechococcus sp. WH 8102] gi|33632063|emb|CAE06516.1| DNA polymerase III beta subunit [Synechococcus sp. WH 8102] Length = 385 Score = 323 bits (828), Expect = 4e-86, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 188/399 (47%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G L + + I ++ Sbjct: 1 MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + ++ E E G +V ++ ++ ++ P ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLASDSPLTLTTE-ESGEQVQLNSLSGSYQMRGMPADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L +S L ++ T FA + +E + L G+ + +L+ A ATDG Sbjct: 120 PDLPMVESGLTLKLQASGLVQALKGTLFASSGDEAKQLLTGVHLSFTDTNLE--AAATDG 177 Query: 179 HRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLAV +V + ++ +P +++ E+ R+++ + + + ++ Sbjct: 178 HRLAVLQVNDALQAAAEGTEGEGAAFAVTLPARSLREVERLVAGWRSEDPISLFCDRGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ R ++G +PNY+ +IP + L ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTSRTLEGTYPNYRQLIPDGFSRTLTMDRRALVGALERIAVLADQHNNVVKF 297 Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S S + ++ D D+G ES+ + + I FN +Y+L+ + ++ D V Sbjct: 298 SSQPESGVVLISADAQDVGSGSESLAAELSGDAIQIAFNVRYMLDGLKAMAG-----DRV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ + +R + Y++MP++I Sbjct: 353 VLHCNAPTTPAVLRPVED--------GDGFIYLVMPVQI 383 >gi|81251089|gb|ABB69888.1| DNA polymerase III beta chain [Nitrosovibrio sp. FJI82] Length = 370 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 24/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I + +L+ L I+ER++T+P+ +VL++ + A+ EI+I P S D Sbjct: 4 IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63 Query: 63 VC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +ITV+A L DI+R L D Q++ + + + G S F LQ+ P +FP Sbjct: 64 ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQE---NRLQVKAGKSRFNLQTLPAEDFP 120 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + L LKNL+ +AMA ++IRYYLNG+ + + LK+ VATDG Sbjct: 121 RLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL A + +++Q + +I+PRKAV E+ + L + V V L ++++ ++ + Sbjct: 179 HRLGFASI-VMSQPREKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVLV 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG+FP+Y VIP K+ +N Q + R SI+S+ + + V+L L++ L + Sbjct: 238 SKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQIV 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A E + + Y+ +DI FN YLL++++N++ + V +NSS Sbjct: 298 CSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTC-----ETVQCSFGDANSSAL 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMRI Sbjct: 353 ITIPGND---------DFKYVVMPMRI 370 >gi|260553771|ref|ZP_05826041.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624] gi|260405075|gb|EEW98575.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624] Length = 382 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 117/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNGQALTITGSDLEVELVASTALS 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 G TV A L DI + L A I + + G+S F L + P + Sbjct: 61 EGACLEAGETTVPARKLMDICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLNTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEILASSSSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNTPLEMSFNAQYLLDVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|239980786|ref|ZP_04703310.1| DNA polymerase III subunit beta [Streptomyces albus J1074] gi|291452644|ref|ZP_06592034.1| DNA polymerase III subunit beta [Streptomyces albus J1074] gi|291355593|gb|EFE82495.1| DNA polymerase III subunit beta [Streptomyces albus J1074] Length = 376 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 92/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ VS LL DI R L + + + G ++ G S F L + P E+P+ Sbjct: 61 TEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVNCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGDVFASAAAQVAIAAGRDDTLPVLTGVRVEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D SV ++L E I Sbjct: 174 FAVREFLWKPEDPETSAVALVPAKTLLDTAKALTSGD-SVTIALAGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RVS+++ R V+LS + Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVSLVA-ERNTPVRLSFEAGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LTLEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPA-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374 >gi|138893681|ref|YP_001124134.1| DNA polymerase III subunit beta [Geobacillus thermodenitrificans NG80-2] gi|196249895|ref|ZP_03148591.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16] gi|134265194|gb|ABO65389.1| DNA polymerase III, beta subunit [Geobacillus thermodenitrificans NG80-2] gi|196210771|gb|EDY05534.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16] Length = 378 Score = 322 bits (827), Expect = 4e-86, Method: Composition-based stats. Identities = 99/395 (25%), Positives = 184/395 (46%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M I+++R + + + + + + TIP+ + L AN + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTANAHGMTLTGSDSDISIESFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + E E I G S F L Sbjct: 61 KEGRLLVDVKRPGSIVLQARFFAEIVKKLPQQ---TIEIETEDNFLTVIRSGHSEFRLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK L+ +T FA++T E R L G+ + + E+ +L Sbjct: 118 LNAEEYPRLPQIEEENVFQIPADLLKTLIRQTVFAVSTSETRPILTGVNWKV--ENGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ +V I A+ A ++++P K++ E+ +IL ++ V + ++ +++ Sbjct: 176 CTATDSHRLAMRKVKIEAENAISYNVVIPGKSLNELSKILDDGNAPVSIVITANQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 E L RL+DG +P +IP + + VN QA+DR S+++ R VKL +L Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTDSKTNMVVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ +P++GK E + ++I F+ KY+++ + + ++ + Sbjct: 296 PGGLLEISSISPEIGKVTEQLQTESIEGEELNISFSAKYMMDALRALDGND-----IQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R DS +++P+R Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376 >gi|328883702|emb|CCA56941.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC 10712] Length = 376 Score = 322 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 92/391 (23%), Positives = 166/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPEMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPESPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGKGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PALDAEADEAYKYLIMPVRL 374 >gi|56418537|ref|YP_145855.1| DNA polymerase III subunit beta [Geobacillus kaustophilus HTA426] gi|56378379|dbj|BAD74287.1| DNA-directed DNA polymerase III beta subunit [Geobacillus kaustophilus HTA426] Length = 378 Score = 322 bits (827), Expect = 5e-86, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M I+++R + + + + + + TIP+ + L A + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL ++N L I G S F L Sbjct: 61 KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTVEIETEDNFLTI---IRSGHSEFRLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK ++ +T FA++T E R L G+ + + E +L Sbjct: 118 LNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGELV 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ +V I ++ ++++P K++ E+ +IL + V + ++ +++ Sbjct: 176 CTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 E L RL+DG +P +IP + + VN QA+DR S+++ R VKL +L Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTESKTTMIVNTKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ +P++GK E + ++I F+ KY+++ + + + + Sbjct: 296 PGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTD-----IQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R DS +++P+R Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376 >gi|311897308|dbj|BAJ29716.1| putative DNA polymerase III subunit beta [Kitasatospora setae KM-6054] Length = 376 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 95/391 (24%), Positives = 167/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + A R + + +PV +LL A +G L + E+ + A Sbjct: 1 MKFRVERDVLAEAVAWAARSLPARPPVPVLAGLLLTAQEGSLALSGFDYEVSARVELEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G V++ G S F L + P E+P+ Sbjct: 61 VEEAGTVLVSGRLLNDISRNLPNRP----VEISTDGARVSVVCGSSRFTLPTLPVDEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + V + A ++ L G+ IN + L ATD +R Sbjct: 117 LPQMP-TATGTVPGDVFASAVSQAAVAAGRDDTLPVLTGVRVEINGSGITL--AATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E+ + + ++ +VP K + +I + L S D V ++LS E I Sbjct: 174 FAVRELLWKPEQDDINAVALVPAKTLQDIAKSLGSGD-QVTIALSAGGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++GEFP ++++ P V +A+ RVS+++ R V+L+ Sbjct: 233 RRTTTRLLEGEFPKFRSIFPTEFSAVAAVQTQPFLEALKRVSLVA-ERNTPVRLNFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A E ++ + I FN YL E + I + + Sbjct: 292 LTLEAGSGDDAQATERVDADLEGDDISIAFNPGYLEEGLKAIDAAY-----AQLSFTTPT 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLTGK---PAVDAEPDDAYQYLIMPVRL 374 >gi|302877247|ref|YP_003845811.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans ES-2] gi|302580036|gb|ADL54047.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans ES-2] Length = 368 Score = 322 bits (826), Expect = 5e-86, Method: Composition-based stats. Identities = 123/385 (31%), Positives = 202/385 (52%), Gaps = 24/385 (6%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--ASV 61 +E+ +L+ L I+ERK T+P+ +VL++ G + A+ EI+IT I A Sbjct: 5 KIEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADH 64 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + +ITV L +I+R L D +++S + + I S F LQS P +FP+ Sbjct: 65 ESNAAITVGGKKLQEILRILPDQSKVSIEVKE---NKAQIKSNKSKFNLQSLPAQDFPTL 121 Query: 122 -KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L+ LK L FAMA +++RYYLNG+ F I ED AVATDGHR Sbjct: 122 SNQLADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVI--EDNIFRAVATDGHR 179 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + I + K+ II+PRKA+ E+ ++LS D +++ S ++ + ++ + Sbjct: 180 LAYNAIAIESSSEKIE-IIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FP+YQ VIP + L +N T ++QA+ R +I+S+ + + V+ L+ LC+ Sbjct: 239 LIEGKFPDYQRVIP-NYTNHLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISS 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A + Y+ +DI FN YL++ + ++ S + +F + NSS+ I Sbjct: 298 NSEQEEAQVEIETDYHGEAIDIGFNVNYLMDGLSSVHS-----EMAIFSFGNPNSSILIT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + YV+MPMRI Sbjct: 353 SPDD---------LEFRYVVMPMRI 368 >gi|324999883|ref|ZP_08120995.1| DNA polymerase III subunit beta [Pseudonocardia sp. P1] Length = 386 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 164/397 (41%), Gaps = 25/397 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLL------QANDGLLEIKASGPEIEIT 54 MK VER + + R + + +PV VL+ + L + E Sbjct: 1 MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIQSDGSDETAGEKLTVSGFDYETSAR 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + A+V G + VS LL DI R L G I+ G+S F L + P Sbjct: 61 VELDATVGEPGRMLVSGRLLADITRALPSKPVDLVVD----GARATINCGNSRFSLPTMP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P + A ++ + + + ++ L GI I L L Sbjct: 117 VEDYPQLPDMPQKAGSVAADALAAAVAQVAVAS-GRDDTLPMLTGIRLEIEGSQLTL--A 173 Query: 175 ATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232 ATD RLAV E++ + A + ++++P K + E+ + L+ + V +S + + L Sbjct: 174 ATDRFRLAVRELEWSPEDASISTAVLIPAKTLAEVAKTLAGSGTVDVALSAGDGMLGLTG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+D EFP ++ +IP + + ++ L +A+ RVS+++ R+ +++ Sbjct: 234 GGRRSTSRLLDAEFPRFRQLIPAEHTTAVELDVAMLVEAIKRVSLVA-DRVAQIRMEFGE 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D L + D+G A E + + P+ I FN YLL+ + + + D + Sbjct: 293 DGLRLAAGGDDVGSAEEELPCALDGNPLTIAFNPGYLLDALGALHT-----DRAQLTFTT 347 Query: 353 SNSSVFIRGKD----KDSKNNKDNKVNAFYVLMPMRI 385 N +R D + K ++LMP+R+ Sbjct: 348 PNRPALVRPVPKPATDDGEAPSPEKSGYLHLLMPVRL 384 >gi|226362896|ref|YP_002780676.1| DNA polymerase III subunit beta [Rhodococcus opacus B4] gi|226241383|dbj|BAH51731.1| DNA polymerase III beta subunit [Rhodococcus opacus B4] Length = 394 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 28/399 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R + + + R + + +PV VLL A + L + E+ + A V Sbjct: 7 KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAEV 66 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + VS LL DI + L + + GT V I+ G + F L + P ++P Sbjct: 67 GSAGQVLVSGKLLADITKSLPNKPVDVTLE----GTRVLITCGSAKFSLPTMPVEDYPQL 122 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + V + + A ++ L GI I + L ATD RL Sbjct: 123 PQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVL--AATDRFRL 179 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL-SSKDSSVKVSLS-------ESRIHLNI 232 AV E++ ++++P K + E + L S V+++L + + + Sbjct: 180 AVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIVN 239 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL+D EFP ++ ++P + V L +A+ RV++++ R V+L S+ Sbjct: 240 DGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVA-ERGAQVRLQFST 298 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L ++ D G+A E +N + + I FN YL++ + ++ S ++V+F + Sbjct: 299 EGLLLSAGGDDAGRAEEGLNAVFQGESLTIAFNPGYLIDGLSSLHS-----EQVLFGFTT 353 Query: 353 SNSSVFIRG------KDKDSKNNKDNKVNAFYVLMPMRI 385 + +R + DS N + Y+LMP+R+ Sbjct: 354 PSRPAVLRPATEEEIEPDDSGNFAAPESAYTYLLMPVRL 392 >gi|254432559|ref|ZP_05046262.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001] gi|197627012|gb|EDY39571.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001] Length = 466 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 35/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++P Sbjct: 79 MKLVCSQTELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 138 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A L +IV +L I+ + G +V++ N+ ++ P +F Sbjct: 139 ASVEASGAITLPARLFGEIVSRLSAEGPITIQSPD-GGEQVDLISLSGNYQMRGMPAEDF 197 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + L + L + T FA + +E + L G+ ++ L+ ATDG Sbjct: 198 PDLPLVQSGQPIRLDADALVKGLRATLFASSGDEAKQLLTGVHLRLDAGALE--CAATDG 255 Query: 179 HRLAV---AEVDIVAQIAKM---------PSIIVPRKAVGEILRILSS--KDSSVKVSLS 224 HRLAV A + A+ + ++ VP +++ E+ R+LSS + + + Sbjct: 256 HRLAVLKLAHGEAPAETSDDAADQADGDPFAVTVPARSLRELERLLSSRQSEEPLSLFCE 315 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 ++ ++ R +DG +PNY +IP S + + + L A++RV++++ Sbjct: 316 RGQVVFLWSDQVLTSRSLDGTYPNYPQLIPDSFVRSISSDRRALIAALERVAVLADQHNN 375 Query: 285 AVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 VKL+ L + D D+G+ ES+ + I FN +YLL+ + ++S Sbjct: 376 VVKLTADPASGTLQVQADAQDVGRGSESVPAVIEGESLQIAFNVRYLLDGLKAMAS---- 431 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++VV ++ + +R D Y++MP++I Sbjct: 432 -EQVVLHCNAPTTPAVLRPGDA---------SGFTYLVMPVQI 464 Score = 44.8 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 31/191 (16%), Positives = 71/191 (37%), Gaps = 18/191 (9%) Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E P + + L ++ A+A+ L + + +L Sbjct: 67 PENPFVPTAPLPMKLVCSQTELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLT- 125 Query: 176 TDGHRLAV-AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS--LSESRIHLNI 232 G L++ + + A + +I +P + GEI+ L S + + + ++ L Sbjct: 126 --GFDLSLGIQTSLPASVEASGAITLPARLFGEIVSRL-SAEGPITIQSPDGGEQVDLIS 182 Query: 233 ESLSMSVR-LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ------A 285 S + +R + +FP+ V + + +R++ L + + R ++ +S + Sbjct: 183 LSGNYQMRGMPAEDFPDLPLV---QSGQPIRLDADALVKGL-RATLFASSGDEAKQLLTG 238 Query: 286 VKLSLSSDKLC 296 V L L + L Sbjct: 239 VHLRLDAGALE 249 >gi|160872676|ref|ZP_02062808.1| DNA polymerase III, beta subunit [Rickettsiella grylli] gi|159121475|gb|EDP46813.1| DNA polymerase III, beta subunit [Rickettsiella grylli] Length = 370 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 116/390 (29%), Positives = 217/390 (55%), Gaps = 25/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R +L+ L +IER+ T+P+ ++L++ ND L + + E+E+ G I Sbjct: 1 MQFTINREILLKPLQLVTAVIERRQTLPILSNLLIRLNDRNLSLLGTDMEVELAGRITLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ T A L DI R L + +++ F + G ++ + G F L + P ++FP Sbjct: 61 KPGQSGTTTAPARKLMDICRSLPEESELKF---QQKGDKLYLQSGRCRFNLSTLPATDFP 117 Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + F L+ L++L+E T+FAMA +++RY+LNG+ + ++ L+ AVAT Sbjct: 118 ISEALDNHPEQAKFVLSPKGLRSLIESTNFAMAHQDVRYFLNGMLWELDRGSLR--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESL 235 DGHRLA+ + + IIVPRKA+ E+ R+LS +++ + + L+++++ + ++ Sbjct: 176 DGHRLALNVKEANITV-DNNQIIVPRKAIYELSRLLSDEENDSLTIFLTKNQLKVAMQDY 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + + +LIDG FP+Y VIP S DK ++ + ++ RVS++S+ + ++V L L + L Sbjct: 235 TFTSKLIDGTFPDYDRVIPKSGDKIFEIDRDLFKASLLRVSVLSNDKHKSVCLELRRNLL 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +N + A + +++ Y+ + I FN YL+++++++ + V L S+ + Sbjct: 295 RIFANNLEQEDAEDYLDIAYHGKDISIAFNINYLIDVLNSLPA-----GPVKITLTSAEA 349 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SV + K+KD+ YV+MPMRI Sbjct: 350 SVRLESKEKDAG---------LYVIMPMRI 370 >gi|302341688|ref|YP_003806217.1| DNA polymerase III, subunit beta [Desulfarculus baarsii DSM 2075] gi|301638301|gb|ADK83623.1| DNA polymerase III, beta subunit [Desulfarculus baarsii DSM 2075] Length = 370 Score = 322 bits (826), Expect = 6e-86, Method: Composition-based stats. Identities = 104/389 (26%), Positives = 204/389 (52%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T + D+ L + ++E++ ++P+ +VLL+A DG L + A+ EI G++ A Sbjct: 1 MELTARKEDLARNLQKSQSVVEKRTSMPILSNVLLEAADGGLTVTATDLEISFQGSLEAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G +TV A Y+I+++L KEN+ ++++ G +++ L +++P+ Sbjct: 61 VNKPGRVTVPARKFYEIIKELPSDDVYLKEKENQ---HIHLTGGRASYDLVGLSAADYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 + + E+ VL ++E+T F+++ E+ R+ L G+F D + L V+TDG Sbjct: 118 LPDIADLSCLEVDGDVLGEMIEKTIFSISQEDTRFNLAGLFVQKRRRDDREILRMVSTDG 177 Query: 179 HRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++ + +I A + +I+PRK V E+ R+ ++D + + L+ S + + + Sbjct: 178 HRLSLIDREIPGLAALDIAGGVIIPRKGVAEMRRL--AEDGGLSLGLNASFAVVKKDGAT 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +R+ +G FP+Y+ V+P + + VN + + RVSI+++ R Q V+LS L Sbjct: 236 LILRMQEGSFPDYEVVVPKNAGRVALVNRQAFGEVIRRVSILATDRFQGVQLSFKEGLLE 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + NPD+G+A E++ V Y + FN +Y L++ + S+ + N+ Sbjct: 296 LISQNPDLGEARETIEVDYEGESFTVGFNARYFLDLCGAMRSEV-----ISLAFVDENNP 350 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+G+ + V+MPMR+ Sbjct: 351 CLIKGEGDE---------GFLSVIMPMRL 370 >gi|325127477|gb|EGC50406.1| DNA polymerase III, beta subunit [Neisseria meningitidis N1568] Length = 367 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|294496877|ref|YP_003560577.1| DNA polymerase III subunit beta [Bacillus megaterium QM B1551] gi|295702244|ref|YP_003595319.1| DNA polymerase III subunit beta [Bacillus megaterium DSM 319] gi|294346814|gb|ADE67143.1| DNA polymerase III, beta subunit [Bacillus megaterium QM B1551] gi|294799903|gb|ADF36969.1| DNA polymerase III, beta subunit [Bacillus megaterium DSM 319] Length = 378 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 182/395 (46%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +++ +++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MKFIIQKDYLVQSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPNE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + A +IV+KL + + I G + F L Sbjct: 61 EEGKEIVDIQKPGSVVLPARFFSEIVKKLPKDIV---ELDVQSHFLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F L + +LKN++ +T FA++T E R L G+ + ++ ++L Sbjct: 118 LDAEEYPHLPQIEENNMFRLPTDLLKNMIRQTVFAVSTSETRPILTGVNWKVDGKELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + I ++++P K++ E +IL V + ++E+++ Sbjct: 176 CIATDSHRLALRKATIETGNEATYNVVIPGKSLSEFSKILDDSHELVDIVITENQVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL+DG +P+ +IP + ++ +N Q++DR S+++ R VKL +L Sbjct: 236 KHLLFFSRLLDGNYPDTSRLIPADSKTDVILNVKEFLQSIDRASLLAREGRNNVVKLSTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++P++GK IE + + + I F+ KY+L+ + + + + Sbjct: 296 DEGIVEISSNSPEIGKVIEEVQSQSISGEELKISFSAKYMLDALKALEGTD-----IKIN 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 FTGAMRPFVIRTLEDDS---------MLQLILPVR 376 >gi|15677733|ref|NP_274896.1| DNA polymerase III subunit beta [Neisseria meningitidis MC58] gi|7227158|gb|AAF42232.1| DNA polymerase III, beta subunit [Neisseria meningitidis MC58] gi|316985518|gb|EFV64465.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76] gi|325133541|gb|EGC56204.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13399] gi|325143791|gb|EGC66108.1| DNA polymerase III, beta subunit [Neisseria meningitidis M01-240013] gi|325200954|gb|ADY96409.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76] gi|325206809|gb|ADZ02262.1| DNA polymerase III, beta subunit [Neisseria meningitidis M04-240196] Length = 367 Score = 322 bits (825), Expect = 7e-86, Method: Composition-based stats. Identities = 113/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++R SI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|239998134|ref|ZP_04718058.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02] gi|240013315|ref|ZP_04720228.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI18] gi|240015760|ref|ZP_04722300.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA6140] gi|240079897|ref|ZP_04724440.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19] gi|240112105|ref|ZP_04726595.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11] gi|240114851|ref|ZP_04728913.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18] gi|240117053|ref|ZP_04731115.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1] gi|240120387|ref|ZP_04733349.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID24-1] gi|240122691|ref|ZP_04735647.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332] gi|240124879|ref|ZP_04737765.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679] gi|240127392|ref|ZP_04740053.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|254492914|ref|ZP_05106085.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291] gi|260441334|ref|ZP_05795150.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2] gi|268593986|ref|ZP_06128153.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02] gi|268596040|ref|ZP_06130207.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19] gi|268598164|ref|ZP_06132331.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11] gi|268600508|ref|ZP_06134675.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18] gi|268602741|ref|ZP_06136908.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1] gi|268681290|ref|ZP_06148152.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332] gi|268683461|ref|ZP_06150323.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679] gi|268685767|ref|ZP_06152629.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|291044692|ref|ZP_06570401.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2] gi|293397794|ref|ZP_06642000.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62] gi|226511954|gb|EEH61299.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291] gi|268547375|gb|EEZ42793.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02] gi|268549828|gb|EEZ44847.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19] gi|268582295|gb|EEZ46971.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11] gi|268584639|gb|EEZ49315.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18] gi|268586872|gb|EEZ51548.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1] gi|268621574|gb|EEZ53974.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332] gi|268623745|gb|EEZ56145.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679] gi|268626051|gb|EEZ58451.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035] gi|291011586|gb|EFE03582.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2] gi|291611740|gb|EFF40809.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62] gi|317165577|gb|ADV09118.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae TCDC-NG08107] Length = 367 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|225025477|ref|ZP_03714669.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC 23834] gi|224941761|gb|EEG22970.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC 23834] Length = 367 Score = 322 bits (825), Expect = 8e-86, Method: Composition-based stats. Identities = 112/384 (29%), Positives = 196/384 (51%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ERK+T+P+ +VL++ G I A+ EI+I P + Sbjct: 4 LEAERDTLLKPLQAVTGIVERKHTLPILSNVLIERTGGQTNILATDLEIQIHTHGPHTDA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A L DI+R L +GA ++ + + + G S F LQ+ P +FP Sbjct: 64 EDFRITTNAKKLQDILRALPEGAIVAL---DWAQNRLTLKTGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V S F L +N++ + +AMA ++IRYYLNG+ + +L+L VATDGHRL Sbjct: 121 IGEEVVSAFTLPQETFRNMLSQVQYAMAVQDIRYYLNGLLMQVEGSNLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + K +I+PRK V E+ ++L+ + V V L +++ + ++ Sbjct: 179 AYSAAVIDADLPK-AEVILPRKTVLELFKLLNRPEEPVTVELLNNQVRFRCNDTVVVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG+FP++ VIP NDK + A++R +I+++ + + V+L L L + N Sbjct: 238 VDGKFPDFNRVIPQDNDKIFLLGRQPFLGALERAAILANEKFRGVRLQLRPGLLSVLCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ N+ + +++ +N S Sbjct: 298 SEQEEAREELEIAYQGAELEVGFNINYLMDVLRNVHA-----EDIQLAFGDANRSTLFTI 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D + Y++MPMRI Sbjct: 353 PDN---------ADFKYIVMPMRI 367 >gi|41406100|ref|NP_958936.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. paratuberculosis K-10] gi|13431485|sp|Q9L7L6|DPO3B_MYCPA RecName: Full=DNA polymerase III subunit beta gi|6969268|gb|AAF33689.1| putative dnaN [Mycobacterium avium subsp. paratuberculosis] gi|41394448|gb|AAS02319.1| DnaN [Mycobacterium avium subsp. paratuberculosis K-10] Length = 399 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 167/398 (41%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL D L I E+ + A + Sbjct: 14 KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + + G V ++ G + F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + A ++ L GI I+ + + L ATD RL Sbjct: 130 PTLPEE-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + +++VP K + E R S V++SL + + ++ Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRLSLGAGAGVGKDGLLGISGN 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ S Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 305 SLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 360 GKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397 >gi|296314156|ref|ZP_06864097.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC 43768] gi|296839191|gb|EFH23129.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC 43768] Length = 367 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLMLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|254804281|ref|YP_003082502.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14] gi|254667823|emb|CBA03814.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14] gi|254670915|emb|CBA07499.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha153] gi|325204853|gb|ADZ00307.1| DNA polymerase III, beta subunit [Neisseria meningitidis M01-240355] Length = 367 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|325139556|gb|EGC62096.1| DNA polymerase III, beta subunit [Neisseria meningitidis CU385] Length = 367 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I P S Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTTGPESGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y ++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|161869313|ref|YP_001598480.1| DNA polymerase III subunit beta [Neisseria meningitidis 053442] gi|161594866|gb|ABX72526.1| DNA polymerase III, beta subunit [Neisseria meningitidis 053442] Length = 367 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|116071808|ref|ZP_01469076.1| DNA polymerase III subunit beta [Synechococcus sp. BL107] gi|116065431|gb|EAU71189.1| DNA polymerase III subunit beta [Synechococcus sp. BL107] Length = 385 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 189/399 (47%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G L + + I ++ Sbjct: 1 MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ E E G +V ++ ++ ++ P ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L ++ T FA + +E + L G+ N + L+ A ATDG Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177 Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLAV +VD ++ ++ +P +++ E+ R+++ + V + ++ Sbjct: 178 HRLAVLQVDDALQDAASASDDASEGFAVTLPARSLREVERLMAGWRSEDPVSLFCDRGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ R ++G +PNY +IP ++ L ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTSRTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVKF 297 Query: 289 SLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + D+ + ++ D D+G ES+ + I FN +YLL+ + + S + V Sbjct: 298 TSQPDEGVVQISADAQDVGSGSESLAASLTGDAIQIAFNVRYLLDGLKAMGS-----ERV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ + ++ + Y++MP++I Sbjct: 353 VLHCNAPTTPAVLKPEGDAEA--------FTYLVMPVQI 383 >gi|321313669|ref|YP_004205956.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5] gi|291482371|dbj|BAI83446.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. natto BEST195] gi|320019943|gb|ADV94929.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5] Length = 378 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL E + I G + F L Sbjct: 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + + + L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSE--LL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK +E++ ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAIAADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|262200048|ref|YP_003271256.1| DNA polymerase III subunit beta [Gordonia bronchialis DSM 43247] gi|262083395|gb|ACY19363.1| DNA polymerase III, beta subunit [Gordonia bronchialis DSM 43247] Length = 388 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 166/400 (41%), Gaps = 29/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + +PV V+L A+DG L I E+ +I A Sbjct: 1 MKFRVARDEFADSVAWVARSLPSRPPVPVLGCVVLGADDG-LTISGFDYEVSAQESIAAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + VS LL DI + L + G V I+ G + F L + P ++P Sbjct: 60 IAEPGQVLVSGRLLADITKALPNKP----VDVTLDGARVAIACGSAKFSLPTMPVEDYPQ 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + + + + + A ++ L G+ I + L ATD R Sbjct: 116 LPDVP-AISGTIPTQLFAEAISQVAIAAGRDDTLPMLTGVRVEIEGSTVVL--AATDRFR 172 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKD-SSVKVSLSESRIH-------LN 231 LAV E+ +++VP K + E + ++ V ++ + Sbjct: 173 LAVRELQWEPTDPDTSGAVLVPAKTLSESAKTAGAEGTGVVSLAFGNGSAIGNDGILGIL 232 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 E+ + RL+D EFP ++ ++P S+ ++ L +A+ RV++++ R V+L Sbjct: 233 GETKRTTTRLLDAEFPKFRQLLPASHTAIATIDSAPLIEAIKRVALVA-ERGAQVRLEFG 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + +T + GKA E + V + + I FN YLL+ + I++D V F Sbjct: 292 EGSVLLTAGGDEAGKAEEELPVQFAGEALTIAFNPGYLLDGLSAINADTVD-----FGFT 346 Query: 352 SSNSSVFIR------GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +R +S + Y+LMP+R+ Sbjct: 347 TPSRPAVLRPSSGEQPAADESGAFAAPESAFTYLLMPVRL 386 >gi|302535571|ref|ZP_07287913.1| DNA polymerase III, beta subunit [Streptomyces sp. C] gi|302444466|gb|EFL16282.1| DNA polymerase III, beta subunit [Streptomyces sp. C] Length = 376 Score = 321 bits (824), Expect = 9e-86, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + ++ +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGD--RVTLASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGQGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDSPA-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADEAYKYLIMPVRL 374 >gi|78183585|ref|YP_376019.1| DNA polymerase III subunit beta [Synechococcus sp. CC9902] gi|78167879|gb|ABB24976.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9902] Length = 385 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 189/399 (47%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G L + + I ++ Sbjct: 1 MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ E E G +V ++ ++ ++ P ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L ++ T FA + +E + L G+ N + L+ A ATDG Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177 Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLAV +V+ A+ ++ +P +++ E+ R+++ D V + ++ Sbjct: 178 HRLAVLQVEDALEDAAANSDDAAEGFAVTLPARSLREVERLMAGWRSDDPVSLFCDRGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ R ++G +PNY +IP ++ L ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTSRTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVKF 297 Query: 289 SLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + D+ + ++ D D+G ES+ + I FN +YLL+ + + S D V Sbjct: 298 TSQPDEGVVQISADAQDVGSGSESLAANLTGDAIQIAFNVRYLLDGLKAMGS-----DRV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ + ++ + Y++MP++I Sbjct: 353 VLHCNAPTTPAVLKPEGDAEA--------FTYLVMPVQI 383 >gi|261417502|ref|YP_003251184.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC61] gi|319765159|ref|YP_004130660.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC52] gi|261373959|gb|ACX76702.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC61] gi|317110025|gb|ADU92517.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC52] Length = 378 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 178/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M I+++R + + + + + + TIP+ + L A + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL E E I G S F L Sbjct: 61 KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTV---EIEREDNFLTIIRSGHSEFRLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK ++ +T FA++T E R L G+ + + E +L Sbjct: 118 LNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGELV 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ +V I ++ ++++P K++ E+ +IL + V + ++ +++ Sbjct: 176 CTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 E L RL+DG +P +IP + + VN QA+DR S+++ R VKL +L Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ +P++GK E + ++I F+ KY+++ + + + + Sbjct: 296 PGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTD-----IQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R DS +++P+R Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376 >gi|261393233|emb|CAX50856.1| DNA polymerase III beta subunit [Neisseria meningitidis 8013] Length = 367 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|119964048|ref|YP_945835.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1] gi|119950907|gb|ABM09818.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1] Length = 374 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 178/388 (45%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + E + R + + +PV +LL+A G + + + E IPA Sbjct: 1 MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + V G+I VS LL DI R L + G++V ++ S+F+L + PESE+P+ Sbjct: 61 IAVEGTILVSGRLLADICRSLPSAP----VEVETDGSKVTLTCRRSSFHLATMPESEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S L V + A + ++ L G+ I ++ + L +ATD +R Sbjct: 117 LPALP-AISGTLPGDAFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237 LA+ EV + S +V K + E+ + L S D ++ ++ +SR I + Sbjct: 174 LAMREVPWKPVTPGISTSALVKSKTLNEVAKTLGGSGDINLALADDDSRLIGFESGGRTT 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DG++P +++ P S V L +AV RVS+++ R V+L+ + L + Sbjct: 234 TSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTQGLLNL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E + + + + FN YL+E + I + V F ++ Sbjct: 293 DAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIETKY-----VRFSFTTAPKPA 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + ++ + +++ + Y++MP+R+ Sbjct: 348 MITAQ---AEADGEDQDDYRYLVMPVRL 372 >gi|254773055|ref|ZP_05214571.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. avium ATCC 25291] Length = 399 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 89/398 (22%), Positives = 167/398 (41%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL D L I E+ + A + Sbjct: 14 KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + + G V ++ G + F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + A ++ L GI I+ + + L ATD RL Sbjct: 130 PTLPEE-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + +++VP K + E R S V++SL + + ++ Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRLSLGAGAGVGKDGLLGISGN 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ + Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFTEG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 305 SLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 360 GKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397 >gi|226303491|ref|YP_002763449.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4] gi|226182606|dbj|BAH30710.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4] Length = 394 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 28/399 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R + + + R + + +PV VLL A + L + E+ + A V Sbjct: 7 KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTVSGFDYEVSAQVRVSADV 66 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G VS LL DI + L + + GT V IS G + F L + P ++P Sbjct: 67 TTAGQALVSGRLLADITKSLPNKPVDVTLE----GTRVLISCGSAKFSLPTMPVEDYPQL 122 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 S + + + + A ++ L GI I + + L ATD RL Sbjct: 123 PTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVL--AATDRFRL 179 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNI 232 AV E++ ++++P K + E + L+ +S V+++L + + + Sbjct: 180 AVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLGIVN 239 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL+D EFP ++ ++P + V T L +A+ RV++++ R V++ S+ Sbjct: 240 DGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVA-ERGAQVRMQFSA 298 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D L ++ D G+A E++N + + I FN YL++ ++++ S + V+F + Sbjct: 299 DGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFGFTT 353 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + +R ++ ++ Y+LMP+R+ Sbjct: 354 PSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 392 >gi|290959003|ref|YP_003490185.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22] gi|260648529|emb|CBG71640.1| DNA polymerase III, beta chain [Streptomyces scabiei 87.22] Length = 376 Score = 321 bits (824), Expect = 1e-85, Method: Composition-based stats. Identities = 94/391 (24%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ VS LL DI R L + + + G + G S F L + P E+PS Sbjct: 61 VDEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D SV ++LS E I Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-SVILALSGSGSGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PALDAEADEAYKYLIMPVRL 374 >gi|229491191|ref|ZP_04385019.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121] gi|229321929|gb|EEN87722.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121] Length = 403 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 28/399 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R + + + R + + +PV VLL A + L + E+ + A V Sbjct: 16 KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTVSGFDYEVSAQVRVSADV 75 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G VS LL DI + L + + GT V IS G + F L + P ++P Sbjct: 76 TTAGQALVSGRLLADITKSLPNKPVDVTLE----GTRVLISCGSAKFSLPTMPVEDYPQL 131 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 S + + + + A ++ L GI I + + L ATD RL Sbjct: 132 PTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVL--AATDRFRL 188 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNI 232 AV E++ ++++P K + E + L+ +S V+++L + + + Sbjct: 189 AVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLGIVN 248 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL+D EFP ++ ++P + V T L +A+ RV++++ R V++ S+ Sbjct: 249 DGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVA-ERGAQVRMQFSA 307 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D L ++ D G+A E++N + + I FN YL++ ++++ S + V+F + Sbjct: 308 DGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFGFTT 362 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + +R ++ ++ Y+LMP+R+ Sbjct: 363 PSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 401 >gi|126658042|ref|ZP_01729194.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] gi|126620680|gb|EAZ91397.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] Length = 393 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 97/407 (23%), Positives = 184/407 (45%), Gaps = 38/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK +SD+ L R + + T P+ +VL+ A+ + + A + I + Sbjct: 1 MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLMVADSQKNRVSLTAFDLSLGIETSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF--FKENELGTEVNISHGDSNFYLQSFPES 116 A V G IT+ A LL DIV +L +G EN V + F +++ Sbjct: 61 ADVSEDGQITLPAKLLNDIVSRLPEGEITLMSEETENNDSHIVALKCASGQFQVRAMDAE 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP E S +L +L ++ FA +++E + L G+ + L+ AT Sbjct: 121 EFPPLPTVEEGESLQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEF--AAT 178 Query: 177 DGHRLAVAEVDIVAQIAKM--------------PSIIVPRKAVGEILRILSSKDSSVKVS 222 DGHRL+V E + Q + ++ +P +A+ E+ R++ +++ S ++ Sbjct: 179 DGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRNESDAIA 238 Query: 223 L--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 L E+++ + ++VR +DG +PNYQ +IP + + + L +++RV++++ Sbjct: 239 LQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVAVLAD 298 Query: 281 VRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + VK + ++ ++V+ D+G A ESM +I FN KYL++ + + + Sbjct: 299 QKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLKALPT 358 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ N V N + Y++MP++I Sbjct: 359 K-----EIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391 >gi|325961452|ref|YP_004239358.1| DNA polymerase III subunit beta [Arthrobacter phenanthrenivorans Sphe3] gi|323467539|gb|ADX71224.1| DNA polymerase III, beta subunit [Arthrobacter phenanthrenivorans Sphe3] Length = 374 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 172/388 (44%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + E + R + + +PV +LL+A G + + + E I A Sbjct: 1 MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIGAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I VS LL DI R L G +V ++ S+F+L + PE+E+P Sbjct: 61 IRDEGTILVSGRLLADICRSLPSAP----VDVETDGNKVTLTCRRSSFHLATMPEAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S + V + A + ++ L G+ I ++ + L +ATD +R Sbjct: 117 LPALP-AISGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237 LA+ EV + S +V K + E+ + L +S D ++ +S +SR I + Sbjct: 174 LAMREVPWKPVTPGISTSALVKAKTLNEVAKTLGNSGDINLALSDDDSRLIGFESGGRTT 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DG++P +++ P S V L +AV RVS+++ R V+L+ + +L + Sbjct: 234 TSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTQGQLNL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E + + + + FN YL+E + I + V F ++ Sbjct: 293 DAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIETK-----FVRFSFTTAPKPA 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + ++D + Y++MP+R+ Sbjct: 348 MITAQADADGEDQD---DYRYLVMPVRL 372 >gi|302543963|ref|ZP_07296305.1| DNA polymerase III, beta subunit [Streptomyces hygroscopicus ATCC 53653] gi|302461581|gb|EFL24674.1| DNA polymerase III, beta subunit [Streptomyces himastatinicus ATCC 53653] Length = 376 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILLKAEEGALSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G V + G S F L + P E+P+ Sbjct: 61 VEDDGTVLVSGRLLADICRALPNRP----VEISSDGVRVTVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374 >gi|255320701|ref|ZP_05361878.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SK82] gi|262380668|ref|ZP_06073821.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SH164] gi|255302317|gb|EET81557.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SK82] gi|262297616|gb|EEY85532.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens SH164] Length = 382 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 117/400 (29%), Positives = 211/400 (52%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + +V +QA+ L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLS 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L DI + L A I + + G+S F L + P + Sbjct: 61 EGACLQPGETTVPARKLMDICKSLPSAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P + ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLNHDNSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDETQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E + ++ IVPRKAV E+ R+LS +D + + + +++ I++ Sbjct: 177 DGHRLALCETLASSTASQPVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK +++ +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGEITVRFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ ++D L + +NP+ +AIE + + YN P+++ FN +YLLE+++ + D+ Sbjct: 297 VFLNFNADSLQLRANNPEQDEAIEDLAIQYNNSPLEMSFNAQYLLEVLNVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VV + +N SV ++ + + YV+MPMR+ Sbjct: 352 VVMTMTEANQSVLVQDP---------AQQDQTYVVMPMRV 382 >gi|254393578|ref|ZP_05008711.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|294813741|ref|ZP_06772384.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|326442162|ref|ZP_08216896.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|197707198|gb|EDY53010.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] gi|294326340|gb|EFG07983.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC 27064] Length = 376 Score = 321 bits (823), Expect = 1e-85, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 168/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VDEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPEMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGKGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAHLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374 >gi|328551702|gb|AEB22194.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens TA208] gi|328909961|gb|AEB61557.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens LL3] Length = 378 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL E + I G + F L Sbjct: 61 EDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++ E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDSQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 D L ++ ++P++GK +E++ + ++I F+ KY+++ + + + + Sbjct: 296 PADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGAD-----IRIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|325129494|gb|EGC52323.1| DNA polymerase III, beta subunit [Neisseria meningitidis OX99.30304] Length = 361 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 114/380 (30%), Positives = 199/380 (52%), Gaps = 21/380 (5%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66 R +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 2 RDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGAGDFR 61 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP E Sbjct: 62 ITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMNVGED 118 Query: 127 V-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRLA A Sbjct: 119 ISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRLAYAA 176 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++IDG+ Sbjct: 177 CAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGK 235 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 FP++ VIP NDK ++ L A++RVSI+++ + + +L L S L + N + Sbjct: 236 FPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNNEQE 295 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 296 EAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTVP--- 347 Query: 366 SKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 348 ------NNPNFKYIVMPMRI 361 >gi|257091665|ref|YP_003165306.1| DNA polymerase III subunit beta [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] gi|257044189|gb|ACV33377.1| DNA polymerase III, beta subunit [Candidatus Accumulibacter phosphatis clade IIA str. UW-1] Length = 376 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 121/392 (30%), Positives = 211/392 (53%), Gaps = 28/392 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61 I R +L L I+ER++T+P+ +VLL+ +L + A+ EI+IT + A Sbjct: 4 IKTRRDTLLGPLQAVSGIVERRHTLPILSNVLLEKRGDVLTLLATDIEIQITTWSTGAVG 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G++TV A L +I+R L + A +S +++ + ++ G S F LQ+ P +FP Sbjct: 64 EGDGAVTVGARKLQEILRSLPESADVSLILDDK---RLQLTAGKSRFSLQTLPADDFPCM 120 Query: 122 KEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F ++ ++L+ +T ++MA +++RYYLNG+ ++ +L+ AVATDGHR Sbjct: 121 ALSEGETKKFTVSQKQFRHLLAQTQYSMAAQDVRYYLNGLLLIVDGSELR--AVATDGHR 178 Query: 181 LAVAEVDIV-------AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 LA + + + A +IVPRK V E+ R+L+ D + + + ++I Sbjct: 179 LAYSSMPLDDAAQAPREPGAARQELIVPRKTVLELSRLLTDTDEPLSIEMLATQIRFQFG 238 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S+ +LIDG FP+Y+ VIP + + V+ L Q++ R +I+++ + + V+L LS+ Sbjct: 239 HVSLVSKLIDGRFPDYERVIPATLRNVVSVSRGLLLQSMIRAAILTNEKFRGVRLILSAG 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + N + +A E + V YN P+D+ FN YLL++++N VDD + + + + Sbjct: 299 SLKIMAANAEQEEAQEEIEVEYNGEPLDVGFNVAYLLDVLNN-----TVDDTIEWGFNDA 353 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS + D YV+MPMRI Sbjct: 354 NSSALLTIPGND---------RFKYVVMPMRI 376 >gi|254387091|ref|ZP_05002365.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1] gi|194345910|gb|EDX26876.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1] Length = 376 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 168/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + ++ +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGD--RVTLASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDSPA-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADEAYKYLIMPVRL 374 >gi|154684520|ref|YP_001419681.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens FZB42] gi|154350371|gb|ABS72450.1| DnaN [Bacillus amyloliquefaciens FZB42] Length = 378 Score = 321 bits (822), Expect = 1e-85, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL E + I G + F L Sbjct: 61 DDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++ E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 D L ++ ++P++GK +E++ + ++I F+ KY+++ + + + + Sbjct: 296 PADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGAD-----IRIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|296167142|ref|ZP_06849549.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] gi|295897464|gb|EFG77063.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium parascrofulaceum ATCC BAA-614] Length = 399 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 89/398 (22%), Positives = 166/398 (41%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL +D L I E+ + A + Sbjct: 14 KFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLSGSDEGLTISGFDYEVSAEAQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DI R L + + G V ++ G + F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDITRALPNKPVDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + A ++ L GI I+ + L ATD RL Sbjct: 130 PVLPEE-TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGNTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + +++VP K + E R + S V++SL + + ++ Sbjct: 187 AVRELTWAASSPDIEAAVLVPAKTLAEAARAGADG-SEVRLSLGAGSGVGKDGLLGISGN 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + +N L +A+ V++++ R V++ S Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + + S + V F + Sbjct: 305 SLRLSAGADDVGRAEEDLAVDFVGEPLTIAFNPTYLTDGLAAVHS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 360 GKPALLRPASADDSPPTGDGPFAALPTDYVYLLMPVRL 397 >gi|158319061|ref|YP_001511568.1| DNA polymerase III subunit beta [Alkaliphilus oremlandii OhILAs] gi|158139260|gb|ABW17572.1| DNA polymerase III, beta subunit [Alkaliphilus oremlandii OhILAs] Length = 368 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 99/387 (25%), Positives = 189/387 (48%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + + + K+T+P+ + L+A + L + + EI I + A+ Sbjct: 1 MKFFCNQKALMHSISIVQKAVSSKSTLPIIKGIYLEAYEDHLRLVGTDMEIGIDHVMEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI V A L +I+R+L D +EN ++ I + F + S+ SEFP Sbjct: 61 IIEEGSIVVDARLFSEIIRRLPDYEVEVSLQEN---NQLLIKCAATEFNILSYNASEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E E++ + KN++ +T FA A +E R L G+ I ++ L VA DG+R Sbjct: 118 LPEIEEDQIHEISQDLFKNMIRQTVFATAQDETRPILTGVLMEIEDD--ILSMVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ + + A + +++P K + E+ RI++ +D ++K+SL+ + + + + Sbjct: 176 VALRKGKLNAHLNNR--VVIPGKTLNEVNRIMTGEEDENIKISLTNNHALFTVGNTKLIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RL++GEF NY +IP ++VN +L +++R S++ R VK S++ K+ + Sbjct: 234 RLLEGEFMNYNQIIPKEFKSRVKVNTRSLLDSIERASLLGKEGRNNLVKFSITDYKMVIN 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E + + + I FN KY ++ + I D+ V ++ S Sbjct: 294 S-NSELGNVHEEILIELEGDDLQIAFNSKYFIDALKVID-----DESVYLEFTTNLSPGI 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D N Y+++P+R+ Sbjct: 348 IKPITND---------NTIYLVLPVRL 365 >gi|118445177|ref|YP_879297.1| DNA polymerase III subunit beta [Clostridium novyi NT] gi|118135633|gb|ABK62677.1| DNA polymerase III, beta subunit [Clostridium novyi NT] Length = 367 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 107/386 (27%), Positives = 186/386 (48%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + L A D L + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKDNELTLIGSDIDLSIETKIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+I V + + +I+RKL + + +N + I S F L EFP Sbjct: 61 VEEEGTIVVDSKIFGEIIRKLPNSSVKINTTDN---NSIEIFCEKSKFDLIHMDADEFPG 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + VLKN+++ T FA+A +E R L GI F + +E KL VA DG+R Sbjct: 118 LPRINENMIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDE--KLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + S ++P K E+ +ILS + +V ++ + + I N+ + R Sbjct: 176 LALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKNVNITFTPNHILFNLGETKVISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP ++ + L ++R S+M VK + D L +T Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E +N+ + I FN KYL++++ + DDE++ DSS S I Sbjct: 294 -NSQLGKVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K++ + Y+++P+R+ Sbjct: 348 KSKEEKA---------YTYLVLPVRL 364 >gi|121634190|ref|YP_974435.1| DNA polymerase III subunit beta [Neisseria meningitidis FAM18] gi|218767524|ref|YP_002342036.1| DNA polymerase III subunit beta [Neisseria meningitidis Z2491] gi|304388448|ref|ZP_07370554.1| DNA-directed DNA polymerase III beta subunit [Neisseria meningitidis ATCC 13091] gi|120865896|emb|CAM09632.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis FAM18] gi|121051532|emb|CAM07829.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis Z2491] gi|254671989|emb|CBA04456.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha275] gi|304337565|gb|EFM03728.1| DNA-directed DNA polymerase III beta subunit [Neisseria meningitidis ATCC 13091] gi|319409788|emb|CBY90096.1| DNA polymerase III beta subunit [Neisseria meningitidis WUE 2594] gi|325131540|gb|EGC54247.1| DNA polymerase III, beta subunit [Neisseria meningitidis M6190] gi|325135493|gb|EGC58111.1| DNA polymerase III, beta subunit [Neisseria meningitidis M0579] gi|325139205|gb|EGC61751.1| DNA polymerase III, beta subunit [Neisseria meningitidis ES14902] gi|325141558|gb|EGC64025.1| DNA polymerase III, beta subunit [Neisseria meningitidis 961-5945] gi|325197602|gb|ADY93058.1| DNA polymerase III, beta subunit [Neisseria meningitidis G2136] gi|325201463|gb|ADY96917.1| DNA polymerase III, beta subunit [Neisseria meningitidis M01-240149] gi|325207444|gb|ADZ02896.1| DNA polymerase III, beta subunit [Neisseria meningitidis NZ-05/33] Length = 367 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 115/384 (29%), Positives = 202/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L S L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|255066617|ref|ZP_05318472.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256] gi|255049201|gb|EET44665.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256] Length = 367 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 117/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L D A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSAIVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L+ K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ + V L +++ ++ ++ Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|29830860|ref|NP_825494.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680] gi|29607973|dbj|BAC72029.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis MA-4680] Length = 376 Score = 321 bits (822), Expect = 2e-85, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLRAEDGALSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + ++ +VP K + + + L+S D SV ++LS E I Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-SVTLALSGSGSGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374 >gi|16077070|ref|NP_387883.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221307811|ref|ZP_03589658.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. 168] gi|221312133|ref|ZP_03593938.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. NCIB 3610] gi|221317066|ref|ZP_03598360.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. JH642] gi|221321329|ref|ZP_03602623.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis str. SMY] gi|118797|sp|P05649|DPO3B_BACSU RecName: Full=DNA polymerase III subunit beta gi|40015|emb|CAA26218.1| unnamed protein product [Bacillus subtilis] gi|467392|dbj|BAA05238.1| beta subunit of DNA polymerase III [Bacillus subtilis] gi|2632269|emb|CAB11778.1| DNA polymerase III (beta subunit) [Bacillus subtilis subsp. subtilis str. 168] Length = 378 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL E + I G + F L Sbjct: 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + + + L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSE--LL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK +E++ ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|89101118|ref|ZP_01173954.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] gi|89084173|gb|EAR63338.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] Length = 378 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 184/395 (46%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R +++ + + + + TIP+ + + A++ + + S +I I IP Sbjct: 1 MKFQIQRDSLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + + + I G S F L Sbjct: 61 SDGNEIVEISRTGSIVLQAKFFSEIVKKLPTDKV---EIDVQNHLQTVIRSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + F + + +LK +V +T FA++T E R L G+ + + ED +L Sbjct: 118 LDAEEYPHLPQLSEEKIFRIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--EDAELT 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + + + + ++++P K++ E+ +IL + + + ++E+++ Sbjct: 176 CIATDSHRLALRKAKVETEANESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 E+L RL++G +P+ +IP + E+ + QA+DR S+++ R VK ++ Sbjct: 236 ENLLFFSRLLEGNYPDTTRLIPNESKTEIGMQTKEFLQAIDRASLLAREGRNNVVKFSTI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++GK +E + + + I F+ KY+++ + + E+ Sbjct: 296 EDGVVEISSNTPEIGKVVEEVQSQFIEGEDLKISFSAKYMMDALKALEGT-----EIKVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 FTGAMRPFVIRPMNDESI---------LQLILPVR 376 >gi|297193295|ref|ZP_06910693.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis ATCC 25486] gi|197718390|gb|EDY62298.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis ATCC 25486] Length = 376 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 166/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGAVSFSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VDEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADEAYKYLIMPVRL 374 >gi|238021643|ref|ZP_04602069.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147] gi|237866257|gb|EEP67299.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147] Length = 367 Score = 320 bits (821), Expect = 2e-85, Method: Composition-based stats. Identities = 116/384 (30%), Positives = 210/384 (54%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L A I+ERK+T+P+ +VLL++ G + I A+ EI+I S Sbjct: 4 LQTERDALLKPLQTATGIVERKHTLPILANVLLESKGGKVHILATDLEIQIHTQGADSEQ 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 +T +A L DI+R L + A + + ++ + G S F LQ+ P ++FP+ Sbjct: 64 GDFQLTTNAKKLQDILRALPENATVQLDLDEH---KLTLKAGKSRFNLQTLPPADFPTMN 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E ++ F L LK+++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 ISETTHTQFSLPQETLKHMINQVQYSMAVQDIRYYLNGLLLQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++AK +I+PRK V E++++L+ ++++ L ++++ ++ ++ Sbjct: 179 AYASTTIEAELAKQ-DVILPRKTVLELVKLLNQPKEAIQIELLDNQVRFQCGDTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP+Y VIP NDK +N L A++R +I+++ + + V+L L+ L +T N Sbjct: 238 IDGKFPDYNRVIPLDNDKIFVINRATLLGALERSAILANEKFRGVRLQLAPGSLKITCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN ++L++++ + +S D++ +N S I Sbjct: 298 SEQEEASEELEIAYAGESLEVGFNIQFLMDVLRSANS-----DDIQIAFGDANRSTLITL 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N Y++MPMRI Sbjct: 353 P---------NNAEFKYIVMPMRI 367 >gi|296330038|ref|ZP_06872522.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305672700|ref|YP_003864371.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii str. W23] gi|296153077|gb|EFG93942.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii ATCC 6633] gi|305410943|gb|ADM36061.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. spizizenii str. W23] Length = 378 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL E + I G + F L Sbjct: 61 EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + + + L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSE--LL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK +E++ ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAILADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|269926108|ref|YP_003322731.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC BAA-798] gi|269789768|gb|ACZ41909.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC BAA-798] Length = 376 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 103/393 (26%), Positives = 185/393 (47%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++ L R + + T+P+ ++LL G L+++A+ E+ IT + A Sbjct: 1 MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWVGAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G TV A L + + L + + E G +++++ G S + +FP+ Sbjct: 61 IEREGVTTVPARLFTEFISSLPNEKVLLELNE---GHKLHVAAGHSAADIHGMDPEDFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VLK ++E+ FA AT++ R L G+ F I+ + KL A DG R Sbjct: 118 VPSASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGD--KLTLAAADGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSMS 238 L+V E I A+ ++IVP KA+ + R++ + V+++++ + +I E++++ Sbjct: 176 LSVKEQSI-NSSAESVNVIVPAKALDALSRLIGDHEEQVEITINPNKSQIVFQAENINVI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS------ 292 RLIDG FPNY +IP V+ R+A+ R I AVKL++S Sbjct: 235 SRLIDGNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDT 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 K+ ++ ++G +S+ I FN +YL +++ I S D+V S Sbjct: 295 GKIVVSATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIES-----DQVALETQS 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NS IR S +V+MPM + Sbjct: 350 PNSPGVIRPVGNGS---------YTHVIMPMHL 373 >gi|241759458|ref|ZP_04757562.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114] gi|241320240|gb|EER56573.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114] Length = 367 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L D A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ ++ Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|261380782|ref|ZP_05985355.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703] gi|284796246|gb|EFC51593.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703] Length = 367 Score = 320 bits (820), Expect = 2e-85, Method: Composition-based stats. Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L D A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ ++ Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|319639359|ref|ZP_07994110.1| DNA polymerase III [Neisseria mucosa C102] gi|317399543|gb|EFV80213.1| DNA polymerase III [Neisseria mucosa C102] Length = 367 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L D A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGNDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ ++ Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTM 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|148241100|ref|YP_001226257.1| DNA polymerase III subunit beta [Synechococcus sp. RCC307] gi|147849410|emb|CAK26904.1| DNA polymerase III beta subunit [Synechococcus sp. RCC307] Length = 379 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 177/393 (45%), Gaps = 24/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ ++++ L R I + T PV +VL+ A+ G + + + I + Sbjct: 1 MKLVCSQAELNGSLQLVSRAIAGRPTHPVLANVLVTADAAAGRISLTGFDLSLGIQTSFA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 A V+ G+IT+ A L DIV +L DG E E TE++ G + ++ + Sbjct: 61 AVVESSGAITLPAKLFTDIVSRLPADGPLTLACPEGEEQTELSALTGS--YQMRGLSAED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + L+ + T FA + +E + L GI + + L+ ATD Sbjct: 119 FPDLPLAQNGQPLLLSGEAFAEGLRSTLFASSGDESKQILTGIHLKVEDGGLEF--AATD 176 Query: 178 GHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIES 234 GHRLAV Q A+ ++ VP +++ E+ R+LS+ + S+ + ++ Sbjct: 177 GHRLAVRRNGAGGQEGAESFAVTVPARSLRELERLLSARPSEESISLFCDRGQVVFLWAD 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-- 292 ++ R ++G +PNY +IP S + + + A++R+++++ VKL+ Sbjct: 237 QVLTSRTLEGTYPNYGQLIPESFARTISLERKPFIAALERIAVLADQHNNVVKLTADPAS 296 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +L ++ D D+G ES+ N + + FN +YLLE + + D V L+S Sbjct: 297 GQLQLSADALDVGSGSESLAAQINGEEIAMAFNVRYLLEGLKAM-----ADATVRLNLNS 351 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + + D + Y++MP++I Sbjct: 352 PTSPAVLSADE-------DGEAGFTYLVMPVQI 377 >gi|78211559|ref|YP_380338.1| DNA polymerase III subunit beta [Synechococcus sp. CC9605] gi|78196018|gb|ABB33783.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9605] Length = 385 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 92/399 (23%), Positives = 182/399 (45%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ L + + I ++ Sbjct: 1 MKVVCSQSELNGALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV++ G+IT+ A LL +IV +L + ++ ++ G +V ++ ++ ++ ++ Sbjct: 61 ASVEISGAITLPARLLGEIVSRLSSDSPVTLAVDD-SGEQVQLTSLSGSYQMRGMSADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L L ++ T FA + +E + L G+ N+ L+ A ATDG Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177 Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLAV V+ A ++ +P +++ E+ R+++S D V + ++ Sbjct: 178 HRLAVLNVEDALQDEAVTDAVDDDGFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ R ++G +PNY +IP + ++ L A++R+++++ VK Sbjct: 238 VFLAADQMVTSRTLEGTYPNYGQLIPDGFARTFGMDRRALIAALERIAVLADQHNNVVKF 297 Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S + ++ D D+G ES+ M I FN +YLL+ + + S D + Sbjct: 298 SSQPEDGVVQISADAQDVGSGSESLPANLEGDAMQIAFNVRYLLDGLKAMGS-----DRI 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ + +R D Y++MP++I Sbjct: 353 VLHCNAPTTPAVLRSDDASEA--------FTYLVMPVQI 383 >gi|225077252|ref|ZP_03720451.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens NRL30031/H210] gi|224951396|gb|EEG32605.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens NRL30031/H210] Length = 367 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L D A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ S+ V L ++++ ++ ++ Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTM 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|297158792|gb|ADI08504.1| DNA polymerase III subunit beta [Streptomyces bingchenggensis BCW-1] Length = 376 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A D L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEDSTLSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G V + G S F L + P E+P+ Sbjct: 61 VEDDGTVLVSGRLLADICRALPNRP----VEISTDGVRVTVVCGSSRFTLHTLPVEEYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGDVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+L+ Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLTFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 347 KPALLSGK---PAMDAEADEAYKYLIMPVRL 374 >gi|169794208|ref|YP_001712001.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE] gi|184156324|ref|YP_001844663.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii ACICU] gi|213155389|ref|YP_002317434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057] gi|215481763|ref|YP_002323945.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB307-0294] gi|239503908|ref|ZP_04663218.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB900] gi|260558094|ref|ZP_05830305.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC 19606] gi|301345944|ref|ZP_07226685.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB056] gi|301512868|ref|ZP_07238105.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB058] gi|301594681|ref|ZP_07239689.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB059] gi|332854714|ref|ZP_08435501.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150] gi|332865594|ref|ZP_08436434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113] gi|332873308|ref|ZP_08441263.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059] gi|169147135|emb|CAM84994.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE] gi|183207918|gb|ACC55316.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii ACICU] gi|193075922|gb|ABO10499.2| DNA polymerase III [Acinetobacter baumannii ATCC 17978] gi|213054549|gb|ACJ39451.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057] gi|213987621|gb|ACJ57920.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB307-0294] gi|260408448|gb|EEX01755.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC 19606] gi|322506193|gb|ADX01647.1| DNA polymerase III, beta chain [Acinetobacter baumannii 1656-2] gi|332727871|gb|EGJ59273.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150] gi|332735246|gb|EGJ66323.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113] gi|332738514|gb|EGJ69386.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059] Length = 382 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|289207189|ref|YP_003459255.1| DNA polymerase III subunit beta [Thioalkalivibrio sp. K90mix] gi|288942820|gb|ADC70519.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. K90mix] Length = 367 Score = 320 bits (820), Expect = 3e-85, Method: Composition-based stats. Identities = 112/386 (29%), Positives = 205/386 (53%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+++ +R + + L E++ T+P+ +V L+ ++ G + + + E+ G Sbjct: 1 MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQGEAAG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ +TVS L D+V+ + ++I + G +++ S F L + P ++FP Sbjct: 61 TIPGECDVTVSVRKLLDVVKAAPEDSEIRATID---GERMSVGFAGSRFSLATLPGADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++ ++ + L+ L+E T F+MA +++RYYL G+ + L+ AVATDGH Sbjct: 118 DWESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLR--AVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+AE ++ I IVPRK + E+ R LS D V+V SE ++ ++ + + Sbjct: 176 RLALAEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDLGNAVLRS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++I+G FP+Y+ VIP L V L+QA+ RVSI++S + + V+++L + + Sbjct: 236 KVIEGRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGDEGCQVMT 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D +A ES+ Y PM+I FN YL+++++ I + D+V L NSS+ + Sbjct: 296 HNADREEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIET-----DQVRIGLRDGNSSILV 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + A YV+MPMR+ Sbjct: 351 QAEPP---------GGARYVVMPMRL 367 >gi|71279230|ref|YP_266784.1| DNA polymerase III subunit beta [Colwellia psychrerythraea 34H] gi|71144970|gb|AAZ25443.1| DNA polymerase III, beta subunit [Colwellia psychrerythraea 34H] Length = 367 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 127/386 (32%), Positives = 210/386 (54%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +L+ L +ERK+T+P+ ++L + + L + A+ E+E+ Sbjct: 1 MKFSLNRELLLKPLLLVSGAVERKSTLPILSNILFEVSGQSLTLTATDLELEMVAYAEIQ 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G IT+ A L DI + L + + ISF +E + +S G S + L + P +FP Sbjct: 61 NQGDDGKITIPARKLLDICKSLPESSLISFEVIDET---IKLSSGRSKYSLSTLPAVDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E + F+L S L+E THF+MA +++RYYLNG+ I E ++ +VATDGH Sbjct: 118 NIEEWKGDVEFQLLKSEFLRLIESTHFSMANQDVRYYLNGM--SIESEGNEIRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ ++ +IVPRK + EI+R+L+ D +V+V L + I + S + Sbjct: 176 RLAICKISNETLALPARQVIVPRKGILEIIRLLAPVDEAVQVFLGSNHIRIIDSEFSFTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L+DG FP+Y+ V+P + DK N LRQ + R SI+S+ + + V+L+ S L +T Sbjct: 236 KLVDGRFPDYRRVLPRNGDKVFETNKDALRQVLSRASILSNEKFKGVRLNFSDTNLKITA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E + + + ++I FN Y+L+++ I D+ V F L +NSSV I Sbjct: 296 NNPEQEQAEEEIEINFPYGELEIGFNVSYVLDVLSAIK-----DENVKFTLADANSSVVI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G + A YV+MPMR+ Sbjct: 351 EG---------SSNGEALYVVMPMRL 367 >gi|169632031|ref|YP_001705767.1| DNA polymerase III, beta chain [Acinetobacter baumannii SDF] gi|169150823|emb|CAO99423.1| DNA polymerase III, beta chain [Acinetobacter baumannii] gi|323516069|gb|ADX90450.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii TCDC-AB0715] Length = 382 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + S Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNAPLEMSFNAQYLLDVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|297528378|ref|YP_003669653.1| DNA polymerase III subunit beta [Geobacillus sp. C56-T3] gi|297251630|gb|ADI25076.1| DNA polymerase III, beta subunit [Geobacillus sp. C56-T3] Length = 378 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M I+++R + + + + + + TIP+ + L A + + S +I I IP Sbjct: 1 MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATALGVTLTGSDSDISIESFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL ++N L I G S F L Sbjct: 61 KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTVEIETEDNFLTI---IRSGHSEFRLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK ++ +T FA++T E R L G+ + + E +L Sbjct: 118 LNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGELV 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ +V I ++ ++++P K++ E+ +IL + V + ++ +++ Sbjct: 176 CTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 E L RL+DG +P +IP + + VN QA+DR S+++ R VKL +L Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ +P++GK E + ++I F+ KY+++ + + + + Sbjct: 296 PGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTD-----IQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R DS +++P+R Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376 >gi|269124279|ref|YP_003297649.1| DNA polymerase III subunit beta [Thermomonospora curvata DSM 43183] gi|268309237|gb|ACY95611.1| DNA polymerase III, beta subunit [Thermomonospora curvata DSM 43183] Length = 375 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + + R + ++ +PV + L+A L++ A E+ Sbjct: 1 MKFRIDRDALADAVAWTARSLPQRPPVPVLGGMHLEA-GDRLKLSAFDYEVSAQVTTDID 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V LL DI R L + G++V + G + F L + P ++PS Sbjct: 60 AEEPGTVLVPGRLLADISRALPP----HPVEVTADGSKVMLRCGSAKFTLPTMPVEDYPS 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + V + A ++ L G+ I+ E + L +TD +R Sbjct: 116 LPEMPPAAGSVGS-DEFAVAVNQVAIAAGKDDTIPMLTGVRVEIDGETVTL--ASTDRYR 172 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNIE 233 LAV E+ + + +VP + + + + L+S + V+V+L E I + Sbjct: 173 LAVRELQWKPERPDFSAAALVPARTLADTAKSLTSG-AEVEVALGGAGSTGEGMIGFSGG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+DG+F Y++++P V +AV RVS+++ R V+L+ S Sbjct: 232 GRRTTTRLLDGDFVKYRSLLPTEYAGMAEVQTGPFIEAVKRVSLVA-ERNTPVRLAFSQG 290 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + D +A+E++ ++I FN+ +LL+ + I SD + Sbjct: 291 EVVLEAGTGDEAQAVEALEATLEGEDINIAFNHGFLLDGLSQIGSDV-----ARLSFTTP 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 346 TKPAVLTGKPPEEGATP----SYRYLIMPVRL 373 >gi|261363924|ref|ZP_05976807.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996] gi|288567936|gb|EFC89496.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996] Length = 367 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 117/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ DG ++ A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L D A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPDSAIVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L+ K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ + V L +++ ++ ++ Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T L A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|171462834|ref|YP_001796947.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] gi|171192372|gb|ACB43333.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius subsp. necessarius STIR1] Length = 371 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 108/391 (27%), Positives = 209/391 (53%), Gaps = 26/391 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R ++L+ L I+ER++T+P+ ++L + + + ++ EI+IT Sbjct: 1 MQLVNTSRDNLLKPLQVVSGIVERRHTLPILANLLFKKIEEKVSFVSTDIEIQITTNANF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R L +G K+ +++ + G S F LQ+ +EF Sbjct: 61 GVGSEDVTTTVAARKLLDILRALPEGPVFLNLKD----SKMVVQSGKSRFSLQTLSATEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + E +++++ + L+ + HF+MA ++IRYYLNG+ + ++ + AVATD Sbjct: 117 PVMQSVGEVTAAWKMSQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKE--VVAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA ++V++ + + +I+PRK + E +L D +++SL+ +++ + Sbjct: 175 GHRLAYSQVELVEAPSGSGQKQEVIIPRKTILECQHLLEGSDEPLEISLTANQVKFSFGD 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP L V L+ A+ R +I+++ + + V+ SLS ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGQKNSLVVGRDALQSALQRAAILTTDKFKGVRFSLSPNR 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N + +A E + Y ++I FN YLL+++ N+ ++++ L +N Sbjct: 295 ITIQSTNAEQEEAQEEIETEYAGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDAN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS I +S YV+MPMRI Sbjct: 350 SSAVITLPGSES---------FKYVVMPMRI 371 >gi|308171893|ref|YP_003918598.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens DSM 7] gi|307604757|emb|CBI41128.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens DSM 7] Length = 378 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++D GSI + A +IV+KL E + I G + F L Sbjct: 61 EDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRFGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++ E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDSQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 D L ++ ++P++GK +E++ + ++I F+ KY+++ + + + + Sbjct: 296 PADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGAD-----IRIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|88607712|ref|YP_505645.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ] gi|88598775|gb|ABD44245.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ] Length = 375 Score = 319 bits (819), Expect = 3e-85, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 205/387 (52%), Gaps = 26/387 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 ++ R D+L+ L + +IER+N+I V V ++A ++E ++ +I I + A+V Sbjct: 11 FSISREDLLQALNYVSSVIERRNSIAVLSCVRIEAKGSVIEFTSTDLDISIEACVQANVA 70 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G SA LLYDIVRKL A + F + ++ ++ G++ FYL +FP + Sbjct: 71 TGGVAVASAQLLYDIVRKLSGEADVRFKLND---GKLLVACGNARFYLHVISPEKFPDIE 127 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 F++ ++ L L+ +T F+M+ EE RY L G++FH+++E LC VATDGHRL+ Sbjct: 128 GSSLDCGFDIPATSLAELLNKTKFSMSVEESRYNLRGVYFHVDDE--MLCCVATDGHRLS 185 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMS 238 +A++ + ++I+PRK V E+L+I+ V V +S +I + M Sbjct: 186 LAKISKPEGLHSGIAVIIPRKTVNEVLKIIGHGGGDAAQMVSVGISNRKICFRYKGYFMV 245 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +++DG FP+Y +IP + ++ + L+ AVDRVS++ +++A+KLS + KL ++ Sbjct: 246 SKVLDGTFPDYAAIIPTECGNSVSIDASVLQSAVDRVSVVVFDKVKAIKLSFTEGKLVLS 305 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G A E ++V Y + I N +YL+E++ +I +++V Sbjct: 306 SASSDQGDASEELSVDYEGDEVVIGLNARYLMEVLGSIKGV------CEIVFSDGSAAVL 359 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + +++MPMRI Sbjct: 360 VKDGEYG-----------MHIVMPMRI 375 >gi|50083299|ref|YP_044809.1| DNA polymerase III beta [Acinetobacter sp. ADP1] gi|49529275|emb|CAG66987.1| DNA polymerase III, beta chain [Acinetobacter sp. ADP1] Length = 382 Score = 319 bits (819), Expect = 4e-85, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + +V +QAN L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L DI + L A I + + G+S F L + P + Sbjct: 61 EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I++ L+ AV T Sbjct: 119 YPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--- 233 DGHRLA+ EV + + IVPRKAVGE+ R+LS +D + + + +++ I Sbjct: 177 DGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIAN 236 Query: 234 --------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ + +LIDG+FP+Y+ VIP DK +++ +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y + +++ FN +YLL+++ + D+ Sbjct: 297 VFLNFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VSMSMTEANQSVLVQDA---------AHPDQTYVVMPMRV 382 >gi|331270705|ref|YP_004397197.1| DNA polymerase III subunit beta [Clostridium botulinum BKT015925] gi|329127255|gb|AEB77200.1| DNA polymerase III, beta subunit [Clostridium botulinum BKT015925] Length = 367 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + L A + L + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNELTLIGSDIDLSIETKIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI V + + +I+RKL + + EN + I S F L EFP+ Sbjct: 61 VQEEGSIVVDSKIFGEIIRKLPNSSIHINTTEN---NSIEIVCEKSKFDLIHMDAEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + VLKN+++ T FA+A +E R L GI F + ++ +L VA DG+R Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDK--RLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ I + S ++P K E+ +ILS + +V ++ + + I N+ + R Sbjct: 176 LALRSNLIDNE--NTISAVIPGKTFNEVSKILSEDEKNVNITFTPNHILFNLGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP ++ L ++R S+M VK + +D L +T Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVNAKRAELLNCIERASLMGKDGNTNLVKFDIKNDNLVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G+ E +N+ + I FN KYL++++ + DDE+V DSS S I Sbjct: 294 -NSQLGRVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIVMEFDSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ ++ Y+++P+R+ Sbjct: 348 KSKENNT---------YTYLVLPVRL 364 >gi|15836607|ref|NP_297295.1| DNA polymerase III subunit beta [Xylella fastidiosa 9a5c] gi|9104762|gb|AAF82815.1|AE003855_2 DNA polymerase III, beta chain [Xylella fastidiosa 9a5c] Length = 366 Score = 319 bits (818), Expect = 4e-85, Method: Composition-based stats. Identities = 121/385 (31%), Positives = 209/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ L H ++ER+ T + ++L++ N+ L + + E+E+ Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS Sbjct: 61 DAESGEITIPARKIYEIVRALPDSSQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHR Sbjct: 118 IDKIEVTERIIIPEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ II+PRK V E+ R+L D +++ ++ + I + ++ + + Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V LR A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + ++ D V +L SNSS IR Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + N + V+MP+R+ Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366 >gi|28197947|ref|NP_778261.1| DNA polymerase III subunit beta [Xylella fastidiosa Temecula1] gi|182680574|ref|YP_001828734.1| DNA polymerase III subunit beta [Xylella fastidiosa M23] gi|28056007|gb|AAO27910.1| DNA polymerase III beta chain [Xylella fastidiosa Temecula1] gi|182630684|gb|ACB91460.1| DNA polymerase III, beta subunit [Xylella fastidiosa M23] gi|307579028|gb|ADN62997.1| DNA polymerase III subunit beta [Xylella fastidiosa subsp. fastidiosa GB514] Length = 366 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ L H ++ER+ T + ++L++ N+ L + + E+E+ Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS Sbjct: 61 DPESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHR Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ II+PRK V E+ R+L D +++ ++ + I + ++ + + Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V LR A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + ++ D V +L SNSS IR Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + N + V+MP+R+ Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366 >gi|225873788|ref|YP_002755247.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC 51196] gi|225791219|gb|ACO31309.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC 51196] Length = 373 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 113/388 (29%), Positives = 191/388 (49%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I+V R D+L L + ++ERK TIP+ + L++A++ L I A+ + + + A Sbjct: 1 MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T+ A LYD V+ L +G +N V I G SN + + FP Sbjct: 61 VKKPGSCTIPARKLYDYVKLLPEGDVSIKLMDNH---WVQIRSGRSNTKMVGMARANFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + L+NL+ +T FA++ EE RY LNG + E + VATDGHR Sbjct: 118 VPEFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAES--IAMVATDGHR 175 Query: 181 LAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 LA E + ++PRKA+ E+ +L + D SV+ + +S + I + Sbjct: 176 LAHIEKSGENFPSMGAEKKTLIPRKALSELQSLLGNTDAESVEFADDDSTLFFRIGHRVL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + R + G+FPNY+ V+P N+K V +L +++ S + R A+K+ L ++L + Sbjct: 236 TSRKLTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D G++ + + Y+ P+ + FN YLL+ + I + EV + S+ Sbjct: 296 SASSTDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGN----TGEVRLEFKDAQSAG 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +D Y++MPMRI Sbjct: 352 QMRPEDG------QEDYKYRYIIMPMRI 373 >gi|149182289|ref|ZP_01860768.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] gi|148849981|gb|EDL64152.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] Length = 378 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 184/395 (46%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R D+++ +G + + + TIP+ + + AN+ + + S +I I IP Sbjct: 1 MKFVIQRDDLVQSVGDVMKAVTSRTTIPILTGIKIIANEEGVTLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V G I + A +IV+KL E + + I G + F L Sbjct: 61 EEGNEIVEVLETGGIVLQAKFFSEIVKKLPMDTV---EIEVQNHLQTVIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E + ++ + +LK ++ +T FA++T E R L G+ + + E+ +L Sbjct: 118 LDPEEYPHLPQIEEGNALKVPTDLLKTMIRQTVFAVSTSETRPILTGVNWKV--ENGELN 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + + K +I++P K++ E+ +IL V++ ++++++ Sbjct: 176 CIATDSHRLAMRKAPLENDNGKEYNIVIPGKSLTELSKILDDNSELVEIVITDNQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL++G +P+ +IP + EL + QA+DR S+++ R VKL ++ Sbjct: 236 KHLMFFSRLLEGNYPDTSRLIPNESKTELTLTTKEFLQAIDRASLLAREGRNNVVKLSTI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++GK IE + + I F+ KY+++ + + E+ Sbjct: 296 EQGFVEISSNTPEIGKVIEEVQSQSIEGEELKISFSAKYMMDALKALEGT-----EIHIN 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I+ DS +++P+R Sbjct: 351 FTGAMRPFVIKPLHDDSI---------LQLILPVR 376 >gi|226309589|ref|YP_002769483.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599] gi|226092537|dbj|BAH40979.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599] Length = 379 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 189/396 (47%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M ITV+R + + H + + + TIP+ + ++ +D L + AS ++ I IP Sbjct: 1 MHITVQREKLSNAVSHVSKAVSSRTTIPILTGIKIKTDDEGLTLTASDSDVSIEVQIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +V GSI ++A + +IVRKL +I ++ L T+ I G + F + Sbjct: 61 EAGEWGVTVHQPGSIVLTARIFSEIVRKLPSN-EIDIQVDDRLATK--IRSGQAEFTING 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F + +LK ++ +T F ++T E+R L G+ + + + KL Sbjct: 118 MDANEYPQLPHLEEDKVFSVPCDLLKAMIRQTVFGVSTSEMRPILTGLMWSL--DQGKLR 175 Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + + +++VP K+ E+++IL + + +++++I + Sbjct: 176 FVATDSHRLASRTAMVECPEDLSFHNVVVPGKSCNELVKILDDDQNLADIVVADNQILVK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + + RL++G +P+ +IP + E+ V+ Q+++R S++S + VKL + Sbjct: 236 SKHILFYSRLLEGTYPDTTRIIPQGSKTEITVSTKEFLQSIERASLLSREGKSNVVKLVT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + +T + P++GK + + N + I FN KY+++ + I S E+ Sbjct: 296 MPDGTVEITSNAPEIGKVTDILMPKAMNGEELKISFNAKYMIDALRAIDSA-----EIKA 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S IR D D ++++P+R Sbjct: 351 SFSGPMSPFVIRPTDHDW---------MLHLILPVR 377 >gi|293611383|ref|ZP_06693679.1| DNA polymerase III [Acinetobacter sp. SH024] gi|292826255|gb|EFF84624.1| DNA polymerase III [Acinetobacter sp. SH024] Length = 382 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 115/400 (28%), Positives = 207/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + ++ +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLL+++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLDVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|261378192|ref|ZP_05982765.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685] gi|269145661|gb|EEZ72079.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685] Length = 367 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 116/384 (30%), Positives = 199/384 (51%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ DG + A+ EI+I + P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRDGQTRLLATDLEIQIDTSGPECSA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S +N + + G S F LQ+ P +FP Sbjct: 64 ADFRITTNAKKFQDILRALPAGALVSLDWDN---NRLTLKAGKSRFALQTLPAEDFPQMN 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V + FEL K+++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 IGEDVSAVFELEQEAFKSMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + + +I+PRK V E+ ++L++ ++V L + ++ ++ ++ Sbjct: 179 AYSACAIDADLPRTE-VILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++R SI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRVELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D+V +N S Sbjct: 298 NEQEEAREEIEIAYQGSGLEVGFNIGYLMDVLRNIHS-----DDVQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|116332683|ref|YP_794210.1| DNA polymerase sliding clamp subunit [Lactobacillus brevis ATCC 367] gi|116098030|gb|ABJ63179.1| DNA polymerase III, beta subunit [Lactobacillus brevis ATCC 367] Length = 379 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 183/395 (46%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ ++ L + R I K TIP+ + + A+D L + S +I I I A Sbjct: 1 MKFTINRAAFIKELNNVSRAISSKTTIPILTGLKIVASDAGLLLTGSNADISIETLIRAD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +D GSI ++A +IV++L + E + G + I+ G + F + Sbjct: 61 NPDVGLTIDEPGSIVLTARFFSEIVKRLPEKE---MTVEVKDGFQTEITSGAAAFNINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + S L+ +V K L+ +T A++ +E R L GI F + D + A Sbjct: 118 DANNYPHLPEIDAADSIVLSGAVFKELISQTVIAVSNQESRPILTGIHFVL--NDNQFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ ++++ +I+P K++ E+ R++ D+ VK+ SE+++ + Sbjct: 176 VATDSHRLSQRQIELSTPSEASFDVIIPGKSLTELSRMIGDDDADVKMQFSENQVLFLLG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 S RL++G +P+ +IP + + L AV+R S++S R VKL+L+ Sbjct: 236 DTSFYSRLLEGNYPDTSRLIPKESSTTVEFEAPELLAAVERASLLSHESRNNVVKLTLTP 295 Query: 293 D--KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ + ++PD+G E + P++I FN Y+ + + + + Sbjct: 296 TDHQVTIFSNSPDVGNVEEELAPKEIGGEPLEISFNPDYMKDALHSFGQAT-----IRVA 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + S N ++ P+R Sbjct: 351 FTSALRPFTLVPTEDTS--------NFIQLITPVR 377 >gi|205371911|ref|ZP_03224731.1| DNA polymerase III subunit beta [Bacillus coahuilensis m4-4] Length = 378 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 187/395 (47%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++R ++++ + + + + TIP+ + + AN+ + + S +I I IP Sbjct: 1 MKFTIQRDNLVQSIQDVMKAVSSRTTIPILTGIKMIANEEGVTLTGSDSDISIESYIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V G + + A +IV+KL E + I G + F L Sbjct: 61 EEDQQIVDVQQSGGVVLQAKFFSEIVKKLPLDTV---EIEVMGQYQTVIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F++ + +LK L+ +T FA++T E R L G+ + + ++ L Sbjct: 118 LDPAEYPHLPTIEEENVFKVPTDLLKTLIRQTVFAVSTSETRPILTGVNWKVEHDE--LN 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + I ++++P K++ E+ +IL + V++ ++E+++ Sbjct: 176 CIATDSHRLAMRKAKIELGSDASYNVVIPGKSLNELSKILDDNNELVEIVITENQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL++G +P+ +IP EL + + QA+DR S+++ R VKL +L Sbjct: 236 KHLLFFSRLLEGNYPDTSRLIPTEKKTELELVTKDFLQAIDRASLLAREGRNNVVKLSTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK +E + + + I F+ KY+++ + + E+ + Sbjct: 296 EAGSIEVSSNSPEIGKVVEEIQSGKVEGEELKISFSAKYMMDALKVLEG-----PEISVQ 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + D+ +++P+R Sbjct: 351 FTGAMRPFVIRPVNDDTI---------LQLILPVR 376 >gi|15826867|ref|NP_301130.1| DNA polymerase III subunit beta [Mycobacterium leprae TN] gi|221229345|ref|YP_002502761.1| DNA polymerase III subunit beta [Mycobacterium leprae Br4923] gi|1169395|sp|P46387|DPO3B_MYCLE RecName: Full=DNA polymerase III subunit beta gi|886326|gb|AAB53142.1| DNA polymerase III beta subunit [Mycobacterium leprae] gi|1262353|emb|CAA94709.1| DnaN [Mycobacterium leprae] gi|13092414|emb|CAC29510.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae] gi|219932452|emb|CAR70095.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae Br4923] Length = 399 Score = 319 bits (818), Expect = 5e-85, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 164/398 (41%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + T+PV VLL +D L I E+ + A + Sbjct: 14 KFCLARESFASAVSWVAKYLPTRPTVPVLSGVLLTGSDSGLTISGFDYEVSAEVQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DI R L + + G V ++ G + F L + ++P+ Sbjct: 74 ASSGSVLVSGRLLSDITRALPNKPVHFYVD----GNRVALTCGSARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L S V + + A + L GI I+ + + L ATD RL Sbjct: 130 PTLPDE-TGTLPSDVFAEAIGQVAIAAGRDYTLPMLTGIRIEISGDTVVL--AATDRFRL 186 Query: 182 AVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ S++VP K + E+ + + V +SL + ++ Sbjct: 187 AVRELKWSVLSSDFEASVLVPAKTLVEVAKAGTDGSG-VCLSLGAGVGVGKDGLFGISGG 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATIDVAELTEAIKLVALVA-DRGAQVRMEFGDG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 305 ILRLSAGADDVGRAEEDLAVAFTGEPLTIAFNPNYLTDGLASVHS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 + +R D + + + Y+LMP+R+ Sbjct: 360 SKPALLRPTSNDDVHPTHDGPFPALPTDYVYLLMPVRL 397 >gi|331693901|ref|YP_004330140.1| DNA polymerase III subunit beta [Pseudonocardia dioxanivorans CB1190] gi|326948590|gb|AEA22287.1| DNA polymerase III, beta subunit [Pseudonocardia dioxanivorans CB1190] Length = 376 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 163/391 (41%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG----LLEIKASGPEIEITGA 56 MK VER + + R + + +PV VL++ L + E Sbjct: 1 MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIEGGGDPGAETLTVSGFDYETSARVE 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + A+V G + VS LL DI R L G+ I+ G+S F L + P Sbjct: 61 LDATVGDPGQVLVSGRLLADITRALPSKPVDLVVD----GSRATINCGNSRFSLPTMPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + +A+ VL + V + A ++ L G+ I E +L AT Sbjct: 117 DYPQLPAMPQ-RAGSVAADVLASAVAQVAVAAGRDDTLPMLTGVRLEI--EGSRLTLAAT 173 Query: 177 DGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES 234 D RLAV E+D + ++++P + + ++ + LS + + +S + + + Sbjct: 174 DRFRLAVRELDWEPEDPSASTAVLIPARTLADVAKALSGSGTVEIALSAGDGMLGMTGSG 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ +IP + + L +A+ RV++++ R+ ++L D Sbjct: 234 RRATTRLLDAEFPRFRQLIPAESTTNAEIEVATLVEAIKRVALVA-DRVAQIRLEFGEDG 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + D+G A E + P+ I FN YLL+ + + + + V + N Sbjct: 293 LRLAAGGDDVGSAEEEIPCALQGEPLTIAFNPSYLLDALGALHT-----ERVQLSFTTPN 347 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D N ++LMP+R+ Sbjct: 348 RPALARPVVADDAANP----GYLHLLMPVRL 374 >gi|56751505|ref|YP_172206.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 6301] gi|81298812|ref|YP_399020.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 7942] gi|56686464|dbj|BAD79686.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 6301] gi|81167693|gb|ABB56033.1| DNA polymerase III, beta subunit [Synechococcus elongatus PCC 7942] Length = 390 Score = 319 bits (817), Expect = 5e-85, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 194/392 (49%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + PV +VLL A+ G L + A + I + Sbjct: 16 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 75 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V+ G+IT+ A LL DIV +L + + ++ + T +S G + ++ EF Sbjct: 76 AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 132 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + +L++S L + T FA + +E + L G+ + + L+ ATDG Sbjct: 133 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEF--AATDG 190 Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235 HRLAV + + A A ++ VP +A+ ++ R+++ D ++ + + + Sbjct: 191 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 250 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293 ++ R +DG++PNY +IP ++ + V+ L A++R+++++ + A++LSL ++ Sbjct: 251 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 310 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L + VD D+G E++ P++I FN +YL E + +++ + + +L+S+ Sbjct: 311 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTD-----IQIQLNSN 365 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V + V Y++MP+++ Sbjct: 366 TSPVVLSPLGP---------VKITYLVMPIQL 388 Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 14/184 (7%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV- 183 + L + A+ + L + + +L A D L++ Sbjct: 13 PPPMKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFD---LSLG 69 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + AQ+ + +I +P K + +I+ L + DS V + +++ L++ S +R I Sbjct: 70 IQTSFAAQVERSGAITLPAKLLNDIVSRLPN-DSDVTLEDNDAAATLSVGSGQYQMRGIS 128 Query: 244 G-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCM 297 EFP V L+++ + L + + +S V L + D L Sbjct: 129 ADEFPELPLVQSQEA---LQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEF 185 Query: 298 TVDN 301 + Sbjct: 186 AATD 189 >gi|168187276|ref|ZP_02621911.1| DNA polymerase III, beta subunit [Clostridium botulinum C str. Eklund] gi|169294798|gb|EDS76931.1| DNA polymerase III, beta subunit [Clostridium botulinum C str. Eklund] Length = 367 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 108/386 (27%), Positives = 188/386 (48%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + L A + + + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNEITLIGSDIDLSIETKIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+I V + + +I+RKL + + EN + I S F L EFPS Sbjct: 61 VEEEGTIVVDSKIFGEIIRKLPNSSVRINTTEN---NSIEIFCEKSKFDLIHMDADEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + VLKN+++ T FA+A +E R L GI F + +E KL VA DG+R Sbjct: 118 LPKINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDE--KLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + S ++P K E+ +ILS + SV ++ + + I N+ + R Sbjct: 176 LALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKSVNITFTPNHILFNLGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP ++ + L ++R S+M VK + D L +T Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E +N+ + I FN KYL++++ + D+E++ DSS S I Sbjct: 294 -NSQLGKVREELNIILQGGELQIAFNSKYLIDVLKILE-----DEEIIMEFDSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD+ + Y+++P+R+ Sbjct: 348 KSKDEKT---------YTYLVLPVRL 364 >gi|220910785|ref|YP_002486094.1| DNA polymerase III subunit beta [Arthrobacter chlorophenolicus A6] gi|219857663|gb|ACL38005.1| DNA polymerase III, beta subunit [Arthrobacter chlorophenolicus A6] Length = 374 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 171/388 (44%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + E + R + + +PV +LL+A G + + + E I A Sbjct: 1 MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEITAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I VS LL DI R L G +V ++ S+F+L + PE+E+P Sbjct: 61 IRDEGTILVSGRLLADICRSLPSAP----VDVETDGNKVTLTCRRSSFHLATMPEAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S + V + A + ++ L G+ I ++ + L +ATD +R Sbjct: 117 LPALP-AISGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237 LA+ EV S +V K + E+ + L +S D S+ +S ++R I + Sbjct: 174 LAMREVPWKPVTPGVSTSALVKAKTLNEVAKTLGNSGDISLALSDDDTRLIGFESGGRTT 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DG++P +++ P S V L +AV RVS+++ R V+L+ ++ L + Sbjct: 234 TSLLVDGDYPKIRSLFPESTPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTAGLLNL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E + + + + FN YL+E + I + V F S+ Sbjct: 293 DAGTGEDAQASEELEAQLSGDDITVAFNPHYLVEGLSVIETK-----FVRFSFTSAPKPA 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + ++D + Y++MP+R+ Sbjct: 348 MITAQADADGEDQD---DYRYLVMPVRL 372 >gi|317120851|ref|YP_004100854.1| DNA polymerase III subunit beta [Thermaerobacter marianensis DSM 12885] gi|315590831|gb|ADU50127.1| DNA polymerase III, beta subunit [Thermaerobacter marianensis DSM 12885] Length = 369 Score = 319 bits (817), Expect = 6e-85, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 190/389 (48%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +++SD+ L A R + ++T+PV +LL A L + A+ E+ + PA Sbjct: 1 MRLVIDQSDLHAALQVAIRGVATRSTLPVLSGILLVAEPEQLRLVATDMEMTVEVLAPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + L +IVR+L G + G I S F + FP+ Sbjct: 61 VQEEGSVVLPGRHLVEIVRRLPPGEVHLEVE----GFRARILQERSRFTIHGTDPGIFPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +L+N++ RT FA++T+E R L G+ F + +L AVATDG R Sbjct: 117 MPHISAGSTVLFDNGLLRNVLRRTTFAVSTDEGRPILTGVSFRAEGD--RLQAVATDGFR 174 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A V + + P + ++P +++ E+ R+L + ++ L E++ + + + Sbjct: 175 IAACSVTLERPVEGQPVAAVIPGRSLAEVARLLPDQ-GIGRLLLDETQAGFQLGEVRLIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296 RL+DG +P+ ++P +++ ++A +R ++++ R A ++L++ +L Sbjct: 234 RLVDGVYPDVLGLVPSEYPTRVQLPTRAFQEACERAALLADTRQPARWVIRLAVEPGRLV 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T +P++G+A E + + M I FN +YL++ + I + +EV+F L + Sbjct: 294 ITASDPELGEAREEIPAQVDGEGMVIGFNARYLVDGLKAIDT-----EEVLFELTEPLKA 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +RG D + Y+++P++I Sbjct: 349 SRLRGVGAD---------DFTYIVLPVKI 368 >gi|329118145|ref|ZP_08246857.1| DNA-directed DNA polymerase III beta subunit [Neisseria bacilliformis ATCC BAA-1200] gi|327465805|gb|EGF12078.1| DNA-directed DNA polymerase III beta subunit [Neisseria bacilliformis ATCC BAA-1200] Length = 367 Score = 319 bits (817), Expect = 7e-85, Method: Composition-based stats. Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VL++ G I A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLIENTHGQTNILATDLEIQINTAGPDSEA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A L DI+R L +GA ++ + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKLQDILRALPEGALVAL---DWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + S F L LK ++ + ++MA ++IRYYLNG+ L+L VATDGHRL Sbjct: 121 VGEEIGSAFSLPQDTLKTMLAQVQYSMAVQDIRYYLNGLLMQTEGGQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + K +I+PRK V E+ ++L+ D V V L E+++ + ++ Sbjct: 179 AYSAAAIEADLPK-AEVILPRKTVLELFKLLNRPDEQVSVELLENQVRFRCNGSVIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG+FP+Y VIP NDK +N A++R +I+++ + + +L L L + N Sbjct: 238 VDGKFPDYNRVIPLDNDKIFLLNRAAFLGALERAAILANEKFRGARLHLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y ++ FN YL++++ NI + D++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEAGFNINYLMDVLRNIHA-----DDIQLAFGDANRSTLFTI 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N + Y++MPMRI Sbjct: 353 P---------NNPDFKYIVMPMRI 367 >gi|313669120|ref|YP_004049404.1| DNA polymerase III, beta subunit [Neisseria lactamica ST-640] gi|309379507|emb|CBX21873.1| unnamed protein product [Neisseria lactamica Y92-1009] gi|313006582|emb|CBN88047.1| putative DNA polymerase III, beta subunit [Neisseria lactamica 020-06] Length = 367 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 112/384 (29%), Positives = 197/384 (51%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I + P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPECGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + G S F LQ+ P +FP Sbjct: 64 ADFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPADDFPQIN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V +FEL K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 IGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + + +I+PRK V E+ ++L++ ++V L + ++ ++ ++ Sbjct: 179 AYSACAIDADLPR-AELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++R +I+++ +I+ +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y ++ FN YL++++ NI + D++ +N Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHT-----DDMQLAFGDANRPTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D N YV+MPMRI Sbjct: 353 PDNP---------NFKYVVMPMRI 367 >gi|170077879|ref|YP_001734517.1| DNA polymerase III subunit beta [Synechococcus sp. PCC 7002] gi|169885548|gb|ACA99261.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7002] Length = 394 Score = 318 bits (816), Expect = 7e-85, Method: Composition-based stats. Identities = 90/408 (22%), Positives = 183/408 (44%), Gaps = 39/408 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 MK +SD+ L R + + T P+ +VLL A+ +++ A + I + P Sbjct: 1 MKFVCSQSDLNSQLSLVGRAVPSRPTHPILGNVLLTADANRHQIQLTAFDLSLGIRTSFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115 A V G++T+ A LL DIV +L +G + L + ++ F ++ Sbjct: 61 AQVIEGGTLTLPAKLLNDIVSRLPEGEVTLSCPSDTLMKGDAQATLTAATGRFQIRGMGA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP + L + L + FA + +E + L G+ +++ L+ A Sbjct: 121 EEFPELPTIQDGKKLMLPAIALSEGLGGVLFAASPDETKQVLTGVHLTHHQDCLEF--AA 178 Query: 176 TDGHRLAVAEV--------------DIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SV 219 TDGHRLA+ E + + ++ +P +A+ E+ R+L++ + + Sbjct: 179 TDGHRLALVETSDQVSPEPESSETGKLPTSTLEDFALTIPARALRELERMLTTANEADLI 238 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + L +S++ + ++ R +DG +P Y +IP +++ + L +++RV++++ Sbjct: 239 ALHLDDSQVIFEVNHQHLTSRKLDGAYPAYHQLIPRQFSRDVTLERRALISSIERVAVLA 298 Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + VK L+ KL + V+ D+G E++ + ++I FN +YL++ + + Sbjct: 299 DQKNNIVKFRLNSAEQKLHLAVEAQDVGSGEEALPAQVSGTDLEIAFNVRYLIDGLKALP 358 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ E+ +L+ +N V V Y++MP++I Sbjct: 359 SN-----EIKMQLNENNQPVIFTP---------LGAVQMTYLIMPVQI 392 >gi|182437494|ref|YP_001825213.1| DNA polymerase III subunit beta [Streptomyces griseus subsp. griseus NBRC 13350] gi|239942669|ref|ZP_04694606.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|239989128|ref|ZP_04709792.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 11379] gi|291446130|ref|ZP_06585520.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|326778149|ref|ZP_08237414.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] gi|178466010|dbj|BAG20530.1| putative DNA polymerase III beta subunit [Streptomyces griseus subsp. griseus NBRC 13350] gi|291349077|gb|EFE75981.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|326658482|gb|EGE43328.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] Length = 376 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 167/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 IDEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + A ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENADASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374 >gi|319651100|ref|ZP_08005234.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2] gi|317397270|gb|EFV77974.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2] Length = 378 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 187/395 (47%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ ++R +++ + + + + TIP+ + + A++ + + S +I I IP Sbjct: 1 MRFIIQRDRLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G+I + A +IV+KL + EN L T I G S F L Sbjct: 61 EAGDEIVEIKQAGAIVLQAKFFSEIVKKLPTDT-VEISVENHLQT--VIRSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK +V +T FA++T E R L G+ + + E+ L Sbjct: 118 LDAEEYPHLPQIEEENVFKIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--ENGTLT 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + I ++ ++++P K++ E+ +IL + + + ++E+++ Sbjct: 176 CIATDSHRLALRKAQIETNASESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 E L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL ++ Sbjct: 236 EHLLFFSRLLEGNYPDTSRLIPSDSKTDVIVNTKEFLQAIDRASLLAKEGRNNVVKLSTI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++GK +E + + I F+ K++++ + + E+ Sbjct: 296 DGGVIEISSNTPEIGKVVEEVQSKSIEGEELKISFSAKFMMDALKALEGS-----EITIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I+ + +S +++P+R Sbjct: 351 FTGAMRPFIIKPLNDESI---------LQLILPVR 376 >gi|260435668|ref|ZP_05789638.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109] gi|260413542|gb|EEX06838.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109] Length = 385 Score = 318 bits (816), Expect = 8e-85, Method: Composition-based stats. Identities = 91/399 (22%), Positives = 184/399 (46%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ L + + I ++ Sbjct: 1 MKVVCSQSELNSALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + ++ ++ G +V ++ ++ ++ ++ Sbjct: 61 ASVETSGAITLPARLLGEIVSRLSSDSPVTLAVDD-SGEQVQLTSLSGSYQMRGMSADDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L L ++ T FA + +E + L G+ N+ L+ A ATDG Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177 Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLAV V+ + + ++ +P +++ E+ R+++S D V + ++ Sbjct: 178 HRLAVLNVEDALQDVAVTDSAEDESFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 L ++ R ++G +PNY +IP + ++ L A++R+++++ VK Sbjct: 238 VLLAADQMVTSRTLEGTYPNYGQLIPDGFTRTFGMDRRALIAALERIAVLADQHNNVVKF 297 Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S + ++ D D+G ES+ M I FN +YLL+ + + S D + Sbjct: 298 SSQPEDGVVQISADAQDVGSGSESLPSNLEGDAMQIAFNVRYLLDGLKAMGS-----DRI 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V ++ + +R ++ Y++MP++I Sbjct: 353 VLHCNAPTTPAVLRSEEASEA--------FTYLVMPVQI 383 >gi|311032257|ref|ZP_07710347.1| DNA polymerase III subunit beta [Bacillus sp. m3-13] Length = 378 Score = 318 bits (816), Expect = 9e-85, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R +++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MKFIIQRDKLVQSVQDVLKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPCE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GS+ + A +I++KL E + I G S F L Sbjct: 61 EDGSENVEVKTAGSVVLQARFFSEIIKKLPMDTV---EIEVQNQYVTTIRSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E F + + +LKN++ +T FA++T E R L G+ + + E+ +L Sbjct: 118 QDAAEYPHLPQVEEQNVFRVPTDLLKNIIRQTVFAVSTSETRPILTGVNWKL--ENHELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + + A+ ++++P K++ E+ +IL + + + ++E+++ Sbjct: 176 CIATDSHRLALRKAKVEAENDITCNVVIPGKSLNELNKILDDTNELLDIVVTENQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 +++ RL+DG +P+ +IP + ++ V QA+DR S+++ R VKL +L Sbjct: 236 KNILFFSRLLDGNYPDTSRLIPAESKTDITVTTKEFLQAIDRASLLAREGRNNVVKLATL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 SD L ++ ++P++GK +E + + + I F+ KY+++ + + + E++ Sbjct: 296 ESDTLEVSSNSPEVGKVVEQVQSNSIDGEELKISFSAKYMMDALKALEGN-----EILIN 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I+ DS +++P+R Sbjct: 351 FTGAMRPFVIKTLHDDS---------MLQLILPVR 376 >gi|311070649|ref|YP_003975572.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942] gi|310871166|gb|ADP34641.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942] Length = 378 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+++ ++E + + + + TIP+ + + A+D + S +I I IP Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL E + I G + F L Sbjct: 61 EGDKEIITIEQPGSIVLQARFFSEIVKKLPMSTV---EIEVQNQYLTIIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ ++ + +LKNL+ +T FA++T E R L G+ + + E+ +L Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKV--ENGELL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + + ++++P K++ E+ +IL V + ++E+++ Sbjct: 176 CIATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL+DG +P+ ++IP + E+ VN QA+DR S+++ R VKLS Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295 Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK +E++ ++I F+ KY+L+ + + E+ Sbjct: 296 PAESIEISSNSPEIGKVVEAVLADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + ++ +++P+R Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376 >gi|261400580|ref|ZP_05986705.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970] gi|269209656|gb|EEZ76111.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970] Length = 367 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 112/384 (29%), Positives = 197/384 (51%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I + P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPECGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + G S F LQ+ P +FP Sbjct: 64 ADFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPADDFPQIN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V +FEL K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 IGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + + +I+PRK V E+ ++L++ ++V L + ++ ++ ++ Sbjct: 179 AYSACAIGADLPR-AELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++R +I+++ +I+ +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y ++ FN YL++++ NI + D++ +N Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHT-----DDMQLAFGDANRPTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D N YV+MPMRI Sbjct: 353 PDNP---------NFKYVVMPMRI 367 >gi|295402122|ref|ZP_06812081.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|312109153|ref|YP_003987469.1| DNA polymerase III subunit beta [Geobacillus sp. Y4.1MC1] gi|294975805|gb|EFG51424.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius C56-YS93] gi|311214254|gb|ADP72858.1| DNA polymerase III, beta subunit [Geobacillus sp. Y4.1MC1] Length = 378 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 183/395 (46%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKIT++R +++ + + + + TIP+ + + A + + S +I I IP Sbjct: 1 MKITIDREALVQSVQDVMKAVSPRTTIPILTGIKITATPQGVTLTGSDSDISIESFIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + E + I G + F L Sbjct: 61 DEDKVLVEIAETGSIVLQARFFSEIVKKLPEKTV---EIEVQPNFLTVIRSGKAEFSLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E FE+ + +LK ++ +T FA++ E R L G+ + I +E+ L Sbjct: 118 LDAEEYPRLPQIEEENVFEIPTDLLKTIIRQTVFAVSVSETRPILTGVNWRIEDEE--LI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + I + + ++++P K++ E+ +IL ++ VK+ ++ ++I Sbjct: 176 CTATDSHRLALRKAKIETENHQSHNVVIPGKSLNELSKILDDSNAPVKIVITANQILFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL+DG +P +IP + ++ VN QA+DR S+++ R VKL +L Sbjct: 236 KRLLFFSRLLDGNYPETSRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S + ++ +P++GK E + + I F+ KY+++ + + + + Sbjct: 296 SDGIIEISSVSPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTD-----IKIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R DS +++P+R Sbjct: 351 FTGAMRPFLLRPLHSDS---------MLQLILPVR 376 >gi|229015407|ref|ZP_04172413.1| DNA polymerase III subunit beta [Bacillus cereus AH1273] gi|229026931|ref|ZP_04183254.1| DNA polymerase III subunit beta [Bacillus cereus AH1272] gi|228734389|gb|EEL85060.1| DNA polymerase III subunit beta [Bacillus cereus AH1272] gi|228745886|gb|EEL95882.1| DNA polymerase III subunit beta [Bacillus cereus AH1273] Length = 381 Score = 318 bits (815), Expect = 1e-84, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEVVEIEQSGSIVLQAKYFSEIVKKLP-KEIVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLEISSNSPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KISFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|262281563|ref|ZP_06059342.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] gi|262257022|gb|EEY75761.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202] Length = 382 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 117/400 (29%), Positives = 207/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLS 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E+ + A++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEITASSTSAQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + ++ +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGNITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLLE++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLEVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VNMSMSEANQSVLVQDP---------AHSDQTYVVMPMRV 382 >gi|299541764|ref|ZP_07052087.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1] gi|298725502|gb|EFI66143.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1] Length = 378 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +LE L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI V A + +IVRKL G + +I G S F+L Sbjct: 61 EDGQQIIHITETGSIVVQARMFNEIVRKLPTNDVEIQVT---PGFQTHIRSGKSEFHLIG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F + + +LK ++ T FA+AT E R L G+ + I E L Sbjct: 118 SDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNE--TLI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + S+++P K++ E+ ++L + V++ ++ ++ Sbjct: 176 CVATDSHRLARRKVQLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 + RL++G +P+ +IP + +N +L QA+DR S+++ R V+ + Sbjct: 236 GDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVVRFEIL 295 Query: 292 SDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ + ++ ++P++GK E + V + I F+ KY++E + I + VV + Sbjct: 296 DNQAVEVSSNSPEIGKVQEEIPVEALEGEGLKISFSAKYMMEALKAIDGQD-----VVIQ 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R D+ +++P+R Sbjct: 351 FTGAMRPFILRSVHDDAI---------LQLILPVR 376 >gi|118465865|ref|YP_879305.1| DNA polymerase III subunit beta [Mycobacterium avium 104] gi|118167152|gb|ABK68049.1| DNA polymerase III, beta subunit [Mycobacterium avium 104] Length = 382 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/393 (22%), Positives = 165/393 (41%), Gaps = 28/393 (7%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66 R + + + + + +PV VLL D L I E+ + A + GS Sbjct: 2 RESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEIASPGS 61 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 + VS LL DIVR L + + G V ++ G + F L + ++P+ Sbjct: 62 VLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTLPTLPE 117 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 + L + + + + A ++ L GI I+ + + L ATD RLAV E+ Sbjct: 118 E-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRLAVREL 174 Query: 187 DIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMS 238 A + +++VP K + E R S V++SL + + ++ + Sbjct: 175 TWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRLSLGAGAGVGKDGLLGISGNGKRST 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL+D EFP ++ ++P + +N L +A+ V++++ R V++ S L ++ Sbjct: 234 TRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEGSLRLS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 293 AGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTPGKPAL 347 Query: 359 IRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 348 LRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 380 >gi|327475231|gb|AEA77210.1| DNA polymerase III beta subunit [Bacillus aquimaris] Length = 378 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R +++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MKFVIQREALVQSVQDVMKAVTSRTTIPILTGIKIIATEEGVTLTGSDSDISIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G I + A +IV+KL E + + I G + F L Sbjct: 61 EEGSEIVEIMDNGGIVLQAKFFSEIVKKLPKDTV---EIEVQNHFQTVIRSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++++ +LK ++ +T FA++T E R L G+ I D +L Sbjct: 118 LDPEEYPHLPQIEEGNGIKVSTDLLKTMIRQTVFAVSTSETRPILTGVNCQIA--DGELS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA+ + I +I++P K++ E+ +IL D V++ ++E+++ Sbjct: 176 CIATDSHRLAMRKAPIETIHDASYNIVIPGKSLNELNKILDDTDEPVEIVITENQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ R VKL +L Sbjct: 236 KHLLFFSRLLEGNYPDTSRLIPSDTKTELTLNTKEFLQAIDRASLLAREGRNNVVKLSTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++GK IE + + I F+ KY+++ + I E+ Sbjct: 296 EGGIIEISSNTPEIGKVIEEVQSESVEGEDLKISFSAKYMMDALKAIEGT-----EIYVN 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ DS +++P+R Sbjct: 351 FTGAMRPFVLKPLHDDSI---------LQLILPVR 376 >gi|307331908|ref|ZP_07611004.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu 4113] gi|306882426|gb|EFN13516.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu 4113] Length = 376 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 87/391 (22%), Positives = 169/391 (43%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + +PV +L++A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILMKAEEGALSLSGFDYEVSARVSVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++ VS LL DI R L + + + G V + G S F L + P E+P+ Sbjct: 61 IEDDGTVLVSGRLLADICRALPNRP----VEISSDGVRVTVVCGSSRFTLHTLPVEEYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+L+ Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETPPFVEAVKRVALVA-ERNTPVRLTFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAMDAEADEAYKYLIMPVRL 374 >gi|172036779|ref|YP_001803280.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142] gi|171698233|gb|ACB51214.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142] Length = 393 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 96/407 (23%), Positives = 184/407 (45%), Gaps = 38/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK +SD+ L R + + T P+ +VL+ A+ + + A + I + Sbjct: 1 MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLVIADSQKNRVSLTAFDLSLGIETSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPES 116 A V G IT+ A LL DIV +L +G +E + V + F +++ Sbjct: 61 ADVSEDGKITLPAKLLNDIVSRLPEGEITLMAEEAEDNDSQIVALKCASGQFQVRAMDAE 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP E S +L +L ++ FA +++E + L G+ + L+ AT Sbjct: 121 EFPPLPTVEEGESIQLPIIMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEF--AAT 178 Query: 177 DGHRLAVAEVDIVAQIAKM--------------PSIIVPRKAVGEILRILSSKDSSVKVS 222 DGHRL+V E + Q + ++ +P +A+ E+ R++ ++ S ++ Sbjct: 179 DGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRSESDAIA 238 Query: 223 L--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 L E+++ + ++VR +DG +PNYQ +IP + + + L +++RV++++ Sbjct: 239 LQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVAVLAD 298 Query: 281 VRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + VK + ++ ++V+ D+G A ESM +I FN KYL++ + + + Sbjct: 299 QKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLKALPT 358 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ N V N + Y++MP++I Sbjct: 359 K-----EIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391 >gi|294668098|ref|ZP_06733205.1| DNA polymerase III, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] gi|291309806|gb|EFE51049.1| DNA polymerase III, beta subunit [Neisseria elongata subsp. glycolytica ATCC 29315] Length = 367 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 115/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++ G I A+ EI+I P S Sbjct: 4 LQADRDALLKPLQAVTGIVERRHTLPILSNVLLESTHGQTNILATDLEIQINTDGPKSEA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A L DI+R L +GAQ++ + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKLQDILRALPEGAQVAL---DWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V S F L LK ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEEVSSAFSLTQEALKGMLSQVQYSMAVQDIRYYLNGLLMQTEGDQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + I A + K +I+PRK V E+ ++L+ + V V L +++ + ++ Sbjct: 179 AYSAATIEADLPK-AEVILPRKTVLELFKLLNQPNEQVSVELLNNQVRFRCNGTVIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG+FP++ VIP NDK +N ++L A++R +I+++ + + +L L L + N Sbjct: 238 VDGKFPDFNRVIPLDNDKIFLLNRSHLLGALERAAILANEKFRGARLHLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ N+ + +++ +N S Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNINYLMDVLRNVHA-----EDMQLAFGDANRSTLFTI 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|320009751|gb|ADW04601.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC 33331] Length = 376 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 168/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSAKVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 IEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAVLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374 >gi|33862274|ref|NP_893834.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9313] gi|33640387|emb|CAE20176.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9313] Length = 388 Score = 317 bits (814), Expect = 1e-84, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 192/402 (47%), Gaps = 33/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I A+ Sbjct: 1 MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ +E G +V + ++ ++ +F Sbjct: 61 ASVESSGAITLPARLLGEIVARLSSDSPIT-LATDEAGEQVELKSSSGSYQMRGMSADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + ++ + L + T FA +++E + L G+ H + + + A ATDG Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKA--MEAAATDG 177 Query: 179 HRLAV--------AEVDIVAQIAKM---PSIIVPRKAVGEILRILSS--KDSSVKVSLSE 225 HRLAV E + +++ S+ +P +++ E+ R+++ D V + + Sbjct: 178 HRLAVLSLADALAVETTVSSEMDDEGENFSVTLPSRSLREVERLIAGWRGDDQVSLFCDK 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ R +DG +PNY+ +IP + V+ A++R+++++ Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFIAALERIAVLADQHNNV 297 Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 VK+S + + L ++ D D+G ES++ + + I FN +Y+L+ + + S Sbjct: 298 VKVSGDNTSELLQISADAQDVGSGSESLSAEFTGDAVQIAFNVRYVLDGLKVMDS----- 352 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V R ++ + I KD D + Y++MP++I Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386 >gi|71275533|ref|ZP_00651819.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon] gi|71900180|ref|ZP_00682320.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1] gi|170729253|ref|YP_001774686.1| DNA polymerase III subunit beta [Xylella fastidiosa M12] gi|71163833|gb|EAO13549.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon] gi|71730069|gb|EAO32160.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1] gi|167964046|gb|ACA11056.1| DNA-directed DNA polymerase [Xylella fastidiosa M12] Length = 366 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ L H ++ER+ T + ++L++ N+ L + + E+E+ Sbjct: 1 MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G IT+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS Sbjct: 61 DAESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHR Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ II+PRK V E+ R+L D +++ ++ + I + ++ + + Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP D+E++V LR A+ R +I+S+ + + V++ +S +L + Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 NP+ +A E + + I FN YLL+ + ++ D V +L SNSS IR Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + N + V+MP+R+ Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366 >gi|299768252|ref|YP_003730278.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1] gi|298698340|gb|ADI88905.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1] Length = 382 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 116/400 (29%), Positives = 207/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I+E L+ AV T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E+ + +++ IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + ++ +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +AIE + + Y P+++ FN +YLLE++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNVPLEMSFNAQYLLEVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VNMSMSEANQSVLVQDP---------AHTDQTYVVMPMRV 382 >gi|302336551|ref|YP_003801757.1| DNA polymerase III subunit beta [Spirochaeta smaragdinae DSM 11293] gi|301633736|gb|ADK79163.1| DNA polymerase III, beta subunit [Spirochaeta smaragdinae DSM 11293] Length = 367 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 112/385 (29%), Positives = 204/385 (52%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E++ +L+ + A II +N + + +VLL+A+DG L IKA+ ++ IP Sbjct: 1 MKFTCEKNALLKEISIAQEIISTRNALSILSNVLLEADDGSLTIKATDLKVSFETRIPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV I+R L +G +N + NF L+S +FP Sbjct: 61 IAAPGSTTVFCDKFLGILRSLPEGDIEVELVDNRVMIRPLFQ--KINFQLKSIAGDKFPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E FE+ L ++ +T FA++ +E RYY+NG++ + E + + VATDG R Sbjct: 119 LQEVSEDLYFEIPQKDLIEMIGQTIFAVSDDETRYYMNGVYVEQDGESISM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ + I +++ + ++I+P K + +++R LSS + ++K+++S+ I + + ++ Sbjct: 177 LSLIKRRIESELKEFDAVIIPPKVL-QLIRKLSSGEGNLKIAISDRNIFVQFDDQRITSN 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP S D +L VN L +A+ RVS++ + + V LS+ + + +T + Sbjct: 236 LIEGQFPNYRRVIPDSQDYQLVVNRDQLEEALKRVSLLVEQKSRRVYLSVENAMMRLTSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E ++ Y I NY YL E + + +EVV R +N ++ + Sbjct: 296 ESDIGVAKEELSCSYEGPETTIALNYLYLAEPLKVMRC-----EEVVLRFTEANKAITLE 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + F+++MPM++ Sbjct: 351 PV---------PEGDYFHIIMPMQL 366 >gi|124021715|ref|YP_001016022.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9303] gi|123962001|gb|ABM76757.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9303] Length = 388 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 191/402 (47%), Gaps = 33/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I A+ Sbjct: 1 MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ A LL +IV +L + I+ +E G +V + ++ ++ +F Sbjct: 61 ASVESSGAITLPARLLGEIVSRLSSDSPIT-LATDEAGEQVELKSLSGSYQMRGMSADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + ++ + L + T FA +++E + L G+ H + + + A ATDG Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKA--MEAAATDG 177 Query: 179 HRLAV--------AEVDIVAQIAKM---PSIIVPRKAVGEILRILSS--KDSSVKVSLSE 225 HRLAV E + + ++ +P +++ E+ R+++ D V + + Sbjct: 178 HRLAVLSLADALDVETTLSSDTDDEGENFAVTLPSRSLREVERLIAGWRSDDQVSLFCDK 237 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 ++ ++ R +DG +PNY+ +IP + V+ A++R+++++ Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFISALERIAVLADQHNNV 297 Query: 286 VKLS--LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 VK+S +S+ L ++ D D+G ES++ + + I FN +Y+L+ + + S Sbjct: 298 VKVSGDSTSELLQISADAQDVGSGSESLSAEFTGDSVQIAFNVRYVLDGLKVMDS----- 352 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V R ++ + I KD D + Y++MP++I Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386 >gi|58584686|ref|YP_198259.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] gi|58419002|gb|AAW71017.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont strain TRS of Brugia malayi] Length = 393 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 123/384 (32%), Positives = 213/384 (55%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R+ +L L ++ER+N I + + ++A G +++ A+ +I I ++ A Sbjct: 29 MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 88 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VSAH L+DIV+KL ++F ++ ++ IS+G++NF L + ++ P Sbjct: 89 VLTEGEVKVSAHTLHDIVKKLPADLDVNFEVNDQ--GKLLISYGNANFSLPNVVLNKLPV 146 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E ++ Y F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 147 LEEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 204 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L++L D + + LS+ +I + + Sbjct: 205 LSCVKKPKPQNINSEFGVIIPRKTVIELLKVLDDCDE-INIKLSDRKIKFTCGKYIIISK 263 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FP+Y+ VIP S DK++ V + L +DRVS++ S RI++++ SL L + + Sbjct: 264 LIDGAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSN 323 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A E + V YN P++I FN +YLL+ + I S + F L S+S+ I Sbjct: 324 SQECSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIKS------KCKFSLSDSSSATVIT 377 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + N N Y++MP+R Sbjct: 378 DE---------NDPNVLYIVMPVR 392 >gi|262193328|ref|YP_003264537.1| DNA polymerase III subunit beta [Haliangium ochraceum DSM 14365] gi|262076675|gb|ACY12644.1| DNA polymerase III, beta subunit [Haliangium ochraceum DSM 14365] Length = 365 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 109/386 (28%), Positives = 203/386 (52%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59 M+ +++S+ L+ L A I +RK+T+P+ +VLL+ + L + A+ + I+ + + Sbjct: 1 MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +TV A L+DIV + + + +N IS G + L P+ +FP Sbjct: 61 KNSAEGGLTVGAKALFDIVANMPEDDVVLRRTDN---NWAEISCGKVKYRLVGMPDRDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E ++ + +++ +++RT F++ +E R++LNG+ F + ++ V+TDGH Sbjct: 118 KVPEHSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARM--VSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ E + A II+P+K +GEI ++L S V++ I ++ +S+ ++V Sbjct: 176 RLSKVERTLEGAPALTAGIIIPKKGIGEIKKLLESG-GKAAVAVKTPYIFVHADSMILAV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP Y+ VIP + +E+ ++ L A+ R +MSS + VK ++S D L +T Sbjct: 235 KLIESQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSSE-TRGVKFNVSPDSLVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DNPD+G+ E + Y+ + I FN KY+++++ +++ D+V L+ + Sbjct: 294 DNPDIGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMAT-----DQVTLELNGELDPGLL 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D N V+MPMRI Sbjct: 349 RPFSDD---------NYLGVVMPMRI 365 >gi|229072955|ref|ZP_04206151.1| DNA polymerase III subunit beta [Bacillus cereus F65185] gi|228710201|gb|EEL62179.1| DNA polymerase III subunit beta [Bacillus cereus F65185] Length = 381 Score = 317 bits (813), Expect = 2e-84, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSA-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|282863319|ref|ZP_06272378.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] gi|282561654|gb|EFB67197.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] Length = 376 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 89/391 (22%), Positives = 165/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + R + + PV +LL+A DG L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 IEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPTMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 AV E + ++ +VP K + + + L+S D +V ++LS E I Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 292 LILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 347 KPALLSGR---PAVDAEANDAYKYLIMPVRL 374 >gi|206970404|ref|ZP_03231357.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] gi|218234602|ref|YP_002364857.1| DNA polymerase III subunit beta [Bacillus cereus B4264] gi|218895143|ref|YP_002443554.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228905434|ref|ZP_04069389.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222] gi|228911330|ref|ZP_04075134.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200] gi|228924235|ref|ZP_04087506.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228955740|ref|ZP_04117735.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228961754|ref|ZP_04123357.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228968643|ref|ZP_04129626.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar sotto str. T04001] gi|229051159|ref|ZP_04194703.1| DNA polymerase III subunit beta [Bacillus cereus AH676] gi|229077276|ref|ZP_04209963.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2] gi|229112903|ref|ZP_04242434.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15] gi|229148040|ref|ZP_04276379.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24] gi|229153649|ref|ZP_04281825.1| DNA polymerase III subunit beta [Bacillus cereus m1550] gi|229181736|ref|ZP_04309059.1| DNA polymerase III subunit beta [Bacillus cereus 172560W] gi|229193741|ref|ZP_04320682.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876] gi|296500840|ref|YP_003662540.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] gi|206734981|gb|EDZ52150.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] gi|218162559|gb|ACK62551.1| DNA polymerase III, beta subunit [Bacillus cereus B4264] gi|218540727|gb|ACK93121.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228589766|gb|EEK47644.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876] gi|228601769|gb|EEK59267.1| DNA polymerase III subunit beta [Bacillus cereus 172560W] gi|228629835|gb|EEK86488.1| DNA polymerase III subunit beta [Bacillus cereus m1550] gi|228635465|gb|EEK91956.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24] gi|228670582|gb|EEL25895.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15] gi|228706031|gb|EEL58332.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2] gi|228722222|gb|EEL73623.1| DNA polymerase III subunit beta [Bacillus cereus AH676] gi|228791072|gb|EEM38690.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar sotto str. T04001] gi|228797948|gb|EEM44958.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pakistani str. T13001] gi|228803968|gb|EEM50592.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228835453|gb|EEM80823.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228848348|gb|EEM93198.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200] gi|228854254|gb|EEM98957.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222] gi|296321892|gb|ADH04820.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] Length = 381 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|30018280|ref|NP_829911.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579] gi|228942639|ref|ZP_04105171.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228975569|ref|ZP_04136121.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228982205|ref|ZP_04142494.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407] gi|229130736|ref|ZP_04259689.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4] gi|29893820|gb|AAP07112.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579] gi|228652753|gb|EEL08638.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4] gi|228777557|gb|EEM25835.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407] gi|228784179|gb|EEM32206.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228817065|gb|EEM63158.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326937799|gb|AEA13695.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar chinensis CT-43] Length = 381 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|172056047|ref|YP_001812507.1| DNA polymerase III subunit beta [Exiguobacterium sibiricum 255-15] gi|171988568|gb|ACB59490.1| DNA polymerase III, beta subunit [Exiguobacterium sibiricum 255-15] Length = 377 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT++R +++ + + + + TIP+ + L+A+ + + S EI I I A Sbjct: 1 MHITIQRDTLIQAIQDVAKAVSSRTTIPILTGIKLEAHGDGMTLTGSDTEISIERTIYAE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GS+ ++A DIV+KL I N + I G + F+L Sbjct: 61 ENGTSYVTVHRAGSVVLNARFFGDIVKKLPTDEVILEVSPNFM---TRIQSGTAEFHLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP + + F L + +L++++ +T FA+A +E R L G+ F +++ L Sbjct: 118 LDPDEFPRLPQVDGGQQFRLPADLLRSMIRQTSFAVAVQETRPVLTGVNFSADKD--ILT 175 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+TD HRLA+ ++IVP K++ E+ ++LS D V ++++ +I Sbjct: 176 CVSTDSHRLALRRAQFETDNEISFQNVIVPGKSLNELSKLLS--DGHVDITITNQQILFK 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 ++ + RL+DG +P+ +IP +R+N L QA+DR S+++ R +K + Sbjct: 234 MKHVLFFSRLLDGNYPDTSRLIPEEYRTAVRMNAKELLQAIDRASLLAREDRNNVIKFAA 293 Query: 291 SSDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + ++ +P++GK E +++ + I FN KY+++ + + + + + Sbjct: 294 EGTTAVEISSHSPEVGKVSEQVSILSLEGEELKISFNSKYMMDALKALDATD-----IEI 348 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + D+D N +++P+R Sbjct: 349 QFTGSIRPFILHPVDQD---------NVLQLILPVR 375 >gi|239825586|ref|YP_002948210.1| DNA polymerase III subunit beta [Geobacillus sp. WCH70] gi|239805879|gb|ACS22944.1| DNA polymerase III, beta subunit [Geobacillus sp. WCH70] Length = 378 Score = 317 bits (812), Expect = 2e-84, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 182/395 (46%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKI ++R +++ + + + + TIP+ + + A + + S +I I IP Sbjct: 1 MKIKIDREALVQSVQDVMKAVSPRTTIPILTGIKIAATSQGVTLTGSDSDISIESFIPTE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + + E + I G + F L Sbjct: 61 EEDKVLVEVVETGSIVLQARFFSEIVKKLPEN---TIEIEVQPNFLTVIRSGKAEFSLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F++ + +LK ++ +T FA++T E R L G+ + + ED +L Sbjct: 118 LDAEEYPRLPQIEEENVFKIPTDLLKTIIRQTVFAVSTSETRPILTGVNWRV--EDGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ + I + + ++++P K++ E+ +IL + V + ++ ++I Sbjct: 176 CTATDSHRLALRKAKIETENQQSYNVVIPGKSLNELSKILDDSNDPVDIVITANQILFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL+DG +P +IP + ++ VN QA+DR S+++ R VKL +L Sbjct: 236 KHLLFFSRLLDGNYPETTRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ +P++GK E + + I F+ KY+++ + + + + Sbjct: 296 NDGIIEISSISPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTD-----IQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R DS +++P+R Sbjct: 351 FTGAMRPFLLRPLHSDS---------MLQLILPVR 376 >gi|254483315|ref|ZP_05096546.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2148] gi|214036410|gb|EEB77086.1| DNA polymerase III, beta subunit [marine gamma proteobacterium HTCC2148] Length = 326 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 110/345 (31%), Positives = 195/345 (56%), Gaps = 20/345 (5%) Query: 42 LEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100 L + + E+E+ G + AS G +T+ A L DI + L +G++ISF E+ ++V Sbjct: 1 LSLTGTDLEVELVGRVKLASAGDSGELTLPARKLVDICKSLPEGSEISFAAED---SKVT 57 Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160 + G S F L + P EFP+ ++ + F + LK L++RT FAMA +++RYYLNG+ Sbjct: 58 VKSGRSRFTLSTLPAREFPNVEDSMGTHQFTIKQGQLKRLIDRTGFAMAQQDVRYYLNGM 117 Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 + + ++ LK+ VATDGHRLA+ + + +I+PRK V E+ R+L ++D + Sbjct: 118 LWELKDKQLKV--VATDGHRLALCTLPEKIEAGDDAQVILPRKGVLELARLLLAEDEDIA 175 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + + I E + + +L+DG+FP+YQ V+P S +K + + LRQA R +I+S+ Sbjct: 176 IVIGSNHIRATTEEFTFTSKLVDGKFPDYQRVLPRSPNKIVLGSRLELRQAFTRTAILSN 235 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + V+L L+ + L + +NP+ +A E++ V Y +++ FN YLL+++ +S Sbjct: 236 EKYRGVRLKLTDNSLDIVANNPEQEEAEEAVPVDYQGESLEVGFNVSYLLDVLAVLSG-- 293 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ L NSS + D+ ++ YV+MPMR+ Sbjct: 294 ---EQIKLSLSDPNSSALLEESDE---------GDSLYVVMPMRL 326 >gi|308389996|gb|ADO32316.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis alpha710] Length = 367 Score = 317 bits (812), Expect = 3e-84, Method: Composition-based stats. Identities = 115/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALLAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L S L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|262374720|ref|ZP_06067992.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205] gi|262310376|gb|EEY91468.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205] Length = 382 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 112/400 (28%), Positives = 201/400 (50%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + +V +Q L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLA 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 DGACIEAGETTVPARKLVEICKSLPSAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I++ L+ V T Sbjct: 119 YPLLSTENSLGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ EV + IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEVLASSTATSSIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ S D L + +NP+ +A E + + Y + P+++ FN +Y+L+++ + D+ Sbjct: 297 VFLNFSQDTLQLRANNPEQDEASEDLVIQYQDAPLEMSFNAQYILDVLSVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VRMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|229164441|ref|ZP_04292369.1| DNA polymerase III subunit beta [Bacillus cereus R309803] gi|228619046|gb|EEK75944.1| DNA polymerase III subunit beta [Bacillus cereus R309803] Length = 379 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN T+ I+ G S F L Sbjct: 61 ENGKEIVEVAQSGSIVLQAKYFSEIVKKLP-KETVEISVENHFMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + S+++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|95929987|ref|ZP_01312727.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM 684] gi|95133956|gb|EAT15615.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM 684] Length = 372 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 215/389 (55%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MKIT +++D+L+ L ++E+K T+P+ +VLL+ + L + A+ EI I I Sbjct: 1 MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + G IT+SA LY+IV++L D KEN V I +G + F + EF Sbjct: 61 AEIISDGKITISAKKLYEIVKELADAEITLKVKEN---NWVEIINGKAKFNIVGLSSEEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176 P +++ + + LKN++++T +A++ +E ++ LNGI+ H D K + V+T Sbjct: 118 PLITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVST 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRL++ +++ +I +I P+K + E+ +I+ ++ +K+S+ ++ +NI+ + Sbjct: 178 DGHRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETT 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RLIDG+FP+Y+ VIP +D ++N L + R+S++++ + + + + +++ Sbjct: 238 LVMRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEIN 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T NP+ G A E++ Y + I FN KYL+++I N VVD ++ + + S Sbjct: 298 VTSSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISN-----VVDKDIRIYIKDNMSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + N V+MPMRI Sbjct: 353 CLILPEDTN---------NYLAVIMPMRI 372 >gi|240172092|ref|ZP_04750751.1| DNA polymerase III subunit beta [Mycobacterium kansasii ATCC 12478] Length = 399 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 88/398 (22%), Positives = 167/398 (41%), Gaps = 28/398 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + + E + + + + +PV VLL +D L I E+ + A + Sbjct: 14 KFRLVKESFAEAVSWVAKNLPTRPAVPVLSGVLLTGSDDGLTISGFDYEVSAEVQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DI R L + + G V ++ G++ F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDITRALPNKPVDFYVD----GNRVALTCGNARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L S + + + A ++ L GI I + L ATD RL Sbjct: 130 PTLPDD-TGTLPSDLFAEAISQVAIAAGRDDTLPMLTGIRVEIAGHTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + S++VP K + E + +S S V++SL + + ++ Sbjct: 187 AVRELTWTALSPDIEASVLVPAKTLAEAAKA-NSDGSDVRLSLGAGTGVGKDGLLGISGN 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ V++++ R V++ + Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPVEHTAVATADVAELTEAIKLVALVA-DRGAQVRMEFAEG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL + + ++ S + V F + Sbjct: 305 TLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSLHS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 +R + + + Y+LMP+R+ Sbjct: 360 GKPALLRPASAEDATPTGSGPFAAVPTDYVYLLMPVRL 397 >gi|294630339|ref|ZP_06708899.1| DNA polymerase III, beta subunit [Streptomyces sp. e14] gi|292833672|gb|EFF92021.1| DNA polymerase III, beta subunit [Streptomyces sp. e14] Length = 376 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 168/390 (43%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + V++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235 AV E + + ++ +VP K + + + L+S DS + E I Sbjct: 174 FAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGDSVILALSGSGAGEGLIGFEGAGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS L Sbjct: 234 RTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 293 ILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 348 PALLSGK---PAVDAEADDAYKYLIMPVRL 374 >gi|294648701|ref|ZP_06726161.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC 19194] gi|292825376|gb|EFF84119.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC 19194] Length = 382 Score = 316 bits (811), Expect = 3e-84, Method: Composition-based stats. Identities = 110/400 (27%), Positives = 203/400 (50%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + ++ +L H +ER++T+ + +V +Q L I S E+E+ + Sbjct: 1 MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACLEPGETTVPARKLVEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I++ L+ V T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ EV + + IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEVLASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +A+E + + Y + P+++ FN +Y+L+++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VRMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|218245876|ref|YP_002371247.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8801] gi|257058924|ref|YP_003136812.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8802] gi|218166354|gb|ACK65091.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8801] gi|256589090|gb|ACU99976.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8802] Length = 393 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 102/407 (25%), Positives = 187/407 (45%), Gaps = 38/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK +S++ L R + + T PV +VLL A++ G + + A + I + Sbjct: 1 MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLLVADESKGRVSLTAFDLSLGIQTSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE---LGTEVNISHGDSNFYLQSFPE 115 A V G++ + A LL DIV +L +G +E + + F L++ Sbjct: 61 AEVSQGGTVALPAKLLNDIVSRLPEGEITLIADADESEDDSQIITLKSASGQFQLRAMSA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFPS E V + +L S+L ++ + FA +++E + L G+ H+ L A Sbjct: 121 EEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGV--HLAGTVDSLEFAA 178 Query: 176 TDGHRLAVAEVDIVAQIAKM-------------PSIIVPRKAVGEILRILSS--KDSSVK 220 TDGHRLAV + + + S+ +P +A+ E+ R+LSS +V Sbjct: 179 TDGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTVA 238 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + E++I + ++ R +DG +P Y +IP + + V +++RV++++ Sbjct: 239 LYVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLAD 298 Query: 281 VRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + VK +L D+ + ++V+ D+GKA ESM D+ FN KYL++ + + S Sbjct: 299 QKNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALPS 358 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ N V + + Y++MP++I Sbjct: 359 Q-----EIQIQLNEGNQPVILTP---------LGGLKMTYLVMPVQI 391 >gi|258593679|emb|CBE70020.1| DNA polymerase III, beta-subunit [NC10 bacterium 'Dutch sediment'] Length = 368 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 111/388 (28%), Positives = 199/388 (51%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R D+L +G ++E K ++P+ H+LL+ + L + + +I + +P Sbjct: 1 MHIKVLRDDLLNGVGPIQAVVETKRSLPILSHLLLETSPSYLSVFGTDLDIGVRKRVPGQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI +SA LY+IVR+L + + + EL I+ G+S F ++ +FPS Sbjct: 61 VVKEGSIALSARKLYEIVRELPATS-VDLSVDGELT--ATITCGNSEFRVKGLSRDDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + ++++ RT FA+++++ RY LNGI F + +D+K+ VATDGHR Sbjct: 118 M-REPKQSGIVIDRRLFRDMIRRTLFAVSSDQTRYTLNGILFRVTPKDVKM--VATDGHR 174 Query: 181 LAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 LA+ ++ + ++ I+PRKA E L++L + + + +S++ + L + + Sbjct: 175 LAMTNHELSSDSCQLTAAIDAIIPRKAAAETLKLLREEPGQITIEISDNHLLLQTDDTLI 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RLI+G+FPNY+ VIP + KE+ VN + R S + R + + +L + Sbjct: 235 DARLIEGQFPNYEQVIPANATKEVTVNREAFLAGLRRTSTILGERALPTTMKFTPGRLLL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N D+G+A E +++ Y M + FN +Y+L+ + +++ ++ RL S Sbjct: 295 SCVNLDLGEARERLDIEYQHDEMSVGFNARYILDFLGALTT-----EQATIRLQDPLSPA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 GKD V+MPMR+ Sbjct: 350 LFSGKDDKQ---------YTCVIMPMRL 368 >gi|226952831|ref|ZP_03823295.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244] gi|226836452|gb|EEH68835.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244] Length = 382 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 109/400 (27%), Positives = 203/400 (50%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + ++ +L H +ER++T+ + +V +Q L I S E+E+ + Sbjct: 1 MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A + + + G+S F L + P + Sbjct: 61 EGACLEPGETTVPARKLVEICKSLPTAALVDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E ++ LK L E+T FAMA +++R+YL G I++ L+ V T Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ EV + + IVPRKAVGE+ R+LS +D + + + +++ I + Sbjct: 177 DGHRLALCEVLASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ + D L + +NP+ +A+E + + Y + P+++ FN +Y+L+++ + D+ Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VRMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382 >gi|228994209|ref|ZP_04154109.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442] gi|228995398|ref|ZP_04155070.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17] gi|229003012|ref|ZP_04160871.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4] gi|228758240|gb|EEM07426.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4] gi|228764351|gb|EEM13226.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17] gi|228765661|gb|EEM14315.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442] Length = 381 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 186/398 (46%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVVTEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGHTISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ ++P++GK +E + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KISFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|52145207|ref|YP_081621.1| DNA polymerase III subunit beta [Bacillus cereus E33L] gi|228988719|ref|ZP_04148804.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|229159051|ref|ZP_04287107.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342] gi|51978676|gb|AAU20226.1| DNA polymerase III, beta subunit [Bacillus cereus E33L] gi|228624470|gb|EEK81241.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342] gi|228771031|gb|EEM19512.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 379 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|255659820|ref|ZP_05405229.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544] gi|260847895|gb|EEX67902.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544] Length = 370 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 106/386 (27%), Positives = 192/386 (49%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT ++++ L R + K P+ + L+A LE++A+ EI + I A Sbjct: 1 MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G +TV ++VRKL +E V+I + F L S +EFP+ Sbjct: 61 IEEPGELTVGGRYFQEVVRKLPGENVKLACTADEK--IVHIESAMAKFTLLSMNAAEFPT 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E F + ++L++L+++T FA +T+E R G + E K+ AT+ HR Sbjct: 119 IQPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTEN--KVTMAATNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 L+V I + +I+P + + E+L +SS + VK+S S ++I + ++L M+ Sbjct: 177 LSVKSETFDQSIGNI-KVIIPSRILQELLHNMSSDIPTDVKISCSYNQISFSFDNLYMTS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+G+FPNY+ VIP ++ + AVDR+S+++ +KL + +++ +T Sbjct: 236 RLIEGQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHIT 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NP++G A E + + + I FN +Y+++++ NI S L+ S Sbjct: 296 SNNPEIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDSKTC-----RIGLNQPLSPAS 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ +D DS Y++ P+R Sbjct: 351 IQEEDDDS---------FVYIVTPVR 367 >gi|225862059|ref|YP_002747437.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|300118808|ref|ZP_07056528.1| DNA polymerase III subunit beta [Bacillus cereus SJ1] gi|225787164|gb|ACO27381.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|298723776|gb|EFI64498.1| DNA polymerase III subunit beta [Bacillus cereus SJ1] Length = 379 Score = 316 bits (810), Expect = 4e-84, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|169825623|ref|YP_001695781.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41] gi|168990111|gb|ACA37651.1| DnaN [Lysinibacillus sphaericus C3-41] Length = 378 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 177/395 (44%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +LE L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI V A + +I+RKL G + +I G S F+L Sbjct: 61 EDGQQIIHIAETGSIVVQARMFNEIIRKLPTNDVEIQVT---PGFQTHIRSGKSEFHLIG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F + + +LK ++ T FA+AT E R L G+ + I E L Sbjct: 118 SDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNE--TLI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + S+++P K++ E+ ++L + V++ ++ ++ Sbjct: 176 CVATDSHRLARRKVQLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSL- 290 + RL++G +P+ +IP + +N +L QA+DR S+++ R V+ + Sbjct: 236 GDVLFFSRLLEGNYPDTSRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVVRFEIL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++P++GK E + V + I F+ KY++E + I + VV + Sbjct: 296 GHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQD-----VVIQ 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R D+ +++P+R Sbjct: 351 FTGAMRPFILRSVHDDAI---------LQLILPVR 376 >gi|329938637|ref|ZP_08288033.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus M045] gi|329302128|gb|EGG46020.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus M045] Length = 376 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 166/390 (42%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+PS Sbjct: 61 VEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + V++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFASAVQQVATAAGRDDTLPVLTGVRIEIEGDSVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235 AV E + + ++ +VP K + + + L+S D + E I Sbjct: 174 FAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALAGSGAGEGLIGFEGAGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS L Sbjct: 234 RTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 348 PALLSGK---PALDAEADEAYKYLIMPVRL 374 >gi|299135925|ref|ZP_07029109.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8] gi|298602049|gb|EFI58203.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8] Length = 389 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 18/387 (4%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +ITV R+++L L A ++ERK TIP+ + L +A+D L I A+ + + + A V Sbjct: 18 EITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASDEKLTITATDLDQSLKTSCVAKV 77 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+ T+ A L+D ++ L +G +N V I G SN + + FP Sbjct: 78 KKAGACTIPARKLFDYIKLLPEGDISIKLMDNH---WVQIRAGRSNTKMVGMARANFPQV 134 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E V F++ ++ LKN++ +T FA++ EE RY LNG + E + VATDGHRL Sbjct: 135 PEFPEVGVFKINAASLKNMIAKTIFAISNEESRYTLNGALLVLKAES--MAMVATDGHRL 192 Query: 182 AVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 A E + + I+ ++PRKA+ E+ +L + ++ V+ + E + I ++ Sbjct: 193 AHIEKLGEALEGISGEKKTLIPRKALAELSGLLGASETDFVEFADDEQSLFFRIGGRVLT 252 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R + G+FPNY+ V+P N K + V +L ++ RV+ + R A+K+ L ++L ++ Sbjct: 253 SRKLTGQFPNYEAVLPRDNTKFVIVRSEDLMSSIQRVAQFADERSGAIKIRLEQNELKLS 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G++ + + YN P+ + FN YL++ + V EV + S+ Sbjct: 313 AQSTDAGESEDIIETPYNYDPLVVGFNSSYLVDFLRATG----VTGEVRLEFKDAQSAGQ 368 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +D + V Y+LMPMRI Sbjct: 369 MRPEDG------NEDVKYRYILMPMRI 389 >gi|183980037|ref|YP_001848328.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M] gi|183173363|gb|ACC38473.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M] Length = 402 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 88/401 (21%), Positives = 171/401 (42%), Gaps = 31/401 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL +D L I E+ +PA + Sbjct: 14 KFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G++ VS LL DI R L + + G V ++ G++ F L + ++P+ Sbjct: 74 ASPGTVLVSGRLLSDITRALPNKPVDFYVD----GNRVALTCGNARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + A ++ L GI I+ E K+ ATD RL Sbjct: 130 PTLPED-TGTLPAELFSEAIGQVAIAAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + +++VP K +GE + + S V++SL + + ++ + Sbjct: 187 AVRELTWNALSPDIEAAVLVPAKTLGEAAKANTDG-SEVRLSLGAGMGVGKDGLLGISGD 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ V++++ R V++ + Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVA-DRGAQVRMEFADG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL++ + ++ S + V F + Sbjct: 305 MLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGK---------DKDSKNNKDNKVNAFYVLMPMRI 385 +R D + Y+LMP+R+ Sbjct: 360 GKPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRL 400 >gi|94676682|ref|YP_588601.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] gi|94219832|gb|ABF13991.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc (Homalodisca coagulata)] Length = 370 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 129/389 (33%), Positives = 208/389 (53%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER +L+ L + ++ +P+ H+LLQ + L + + EIEI I + Sbjct: 1 MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G I V A L+DI R L + A I+ E GT + + G S F L + P + FP Sbjct: 61 KVDKIGIIMVCARKLFDICRSLPEDALINITLE---GTVMLVIAGRSRFSLMTLPATNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F L LK +++ T F+MA +++RY LNG+ F I ++L+ VATDGH Sbjct: 118 KIADGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELR--TVATDGH 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLS 236 RLA + I + SIIVPRK V E+LRIL D+ VK+ + + I + I + Sbjct: 176 RLAACTIYINVLKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNYI 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + LI+G FP+Y +V+P + +K L+V ++QA+ RV+I+S+ + + V+L L ++L Sbjct: 236 FTSNLIEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQLK 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T N + +A E ++V Y +++ FN Y+L+I+ + D V ++ SS Sbjct: 296 ITAKNLEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKC-----DTVRLLFNNEASS 350 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I + + Y++MPMR+ Sbjct: 351 VQI---------DDCMNPMSIYIVMPMRM 370 >gi|312888869|ref|ZP_07748431.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM 18603] gi|311298610|gb|EFQ75717.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM 18603] Length = 374 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 178/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L + +P+ + L + D L I A+ + +T ++ Sbjct: 1 MRFIVSTSTLLKQLQAVSGALSSSTVLPILENFLFEIKDSNLTISATDLQTSMTTSLSVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + + +L D ++ L + + E I+ GD + L +FP Sbjct: 61 AKENGRVAIPSRILLDTLKSLPEQPIAFSVDDKTFAIE--INAGDGKYKLSGENGDDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L +SVL + +T FA++ +E+R + G+F ++ L VATD H+ Sbjct: 119 IPVVENASSVNLPASVLAEAINKTIFAVSNDELRPAMTGVFCQLSTTSLTF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L A+ A S I+P+KA+ + L S ++SV V + + ++++ R Sbjct: 177 LVRYRRK-DAKAAGTTSFILPKKALNLLKSSLPSDETSVAVEYNNTSAFFKFGNINLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ ++ RV+I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPQTNPNKLLIDRQAFLGSLSRVAIYANKTTHQVRLKINGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E + Y M+I FN ++L+E++ N+ S EV + + N + + Sbjct: 296 DIDFANEAHERLTCQYEGDDMEIGFNARFLIEMLKNLGSA-----EVSLEMSTPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + ++MP+ + Sbjct: 351 LPQGGD------ENEDVLMLVMPVML 370 >gi|307152245|ref|YP_003887629.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822] gi|306982473|gb|ADN14354.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822] Length = 393 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 101/407 (24%), Positives = 187/407 (45%), Gaps = 38/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK T +SD+ L + + T P+ +VL A GL+ + A + I + Sbjct: 1 MKFTCSQSDLNANLSLVRSAVPNRPTHPILGNVLFVADTEKGLISLTAFDLSLGIRTSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL----GTEVNISHGDSNFYLQSFP 114 A+V+ GSIT++A LL DIV +L +G +E + ++V I F L+ Sbjct: 61 ANVEEDGSITLAAKLLNDIVSRLPEGEITITLEEEDDGEEEQSKVTIESVSGRFQLRGMK 120 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP E V L S L + + FA +T+E + L G+ ++ L+ Sbjct: 121 ADDFPELPTIENVEPVRLPVSALTEGLRGSLFAASTDETKQVLTGVHLSGLQDSLEF--A 178 Query: 175 ATDGHRLAVAEVDIVAQIAKM------------PSIIVPRKAVGEILRILSSKDSS--VK 220 ATDGHRLAV + + +I +P KA+ E+ RI++ + V Sbjct: 179 ATDGHRLAVVQTPTQQTTEEEDSTPQPESNLEGFAITIPAKALRELERIMTMHKETEAVA 238 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + E+++ + S ++ R ++G +PNY+ +IP + + L +++RV++++ Sbjct: 239 LYVDEAQVIFELGSQRLTSRKLEGAYPNYEQLIPHQFSRSATLERKRLLSSLERVALLAD 298 Query: 281 VRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + VK +L +L ++V++ D+G A ESM+ + +I FN KYL++ + + + Sbjct: 299 QKNNLVKFTLAEEKGQLILSVESQDLGSARESMDAQISGESGEIAFNVKYLMDGLKALGA 358 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ V + Y++MP++I Sbjct: 359 A-----EIQMQLNQEKQPVIFTP---------LGGLKMTYLVMPVQI 391 >gi|149191877|ref|ZP_01870111.1| DNA polymerase III subunit beta [Vibrio shilonii AK1] gi|148834269|gb|EDL51272.1| DNA polymerase III subunit beta [Vibrio shilonii AK1] Length = 320 Score = 316 bits (809), Expect = 5e-84, Method: Composition-based stats. Identities = 108/340 (31%), Positives = 193/340 (56%), Gaps = 21/340 (6%) Query: 47 SGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105 + E+E+ + + GS+TV + DI R L D + I+ E G V + G Sbjct: 1 TDLEVELVSKVTLESEFEAGSVTVPSRKFLDICRGLPDDSTITIVLE---GDRVQVRSGR 57 Query: 106 SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 S F L + P S+FP+ ++ + + + + LK+L+E+T F+MA +++RYYLNG+ F ++ Sbjct: 58 SRFSLSTLPASDFPNIEDWQQEVAVTVTQAELKSLIEKTQFSMANQDVRYYLNGMLFELD 117 Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225 + L+ +VATDGHR+AVA V + IIVPRK V E+ ++L + + V + + Sbjct: 118 QNTLR--SVATDGHRMAVALVSLEGSF-DNKQIIVPRKGVQELSKLLDAPEQPVTLQIGS 174 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 S I + + + +L+DG FP+Y+ V+P + DK L NC LRQA R +I+S+ + + Sbjct: 175 SNIRAEVNNFVFTSKLVDGRFPDYRRVLPQNTDKTLEANCDELRQAFSRAAILSNEKFRG 234 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V+++L +++ +T +NP+ +A E ++V + ++I FN Y+L++++ + D+ Sbjct: 235 VRVNLDQNEMRITANNPEQEEAEEMLDVEFQGDALEIGFNVSYVLDVLNTLRC-----DQ 289 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + ++N+S I + DS A YV+MP+R+ Sbjct: 290 VRISMSNANASALIENSEDDS---------AMYVVMPIRL 320 >gi|298369734|ref|ZP_06981051.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str. F0314] gi|298282291|gb|EFI23779.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str. F0314] Length = 367 Score = 316 bits (809), Expect = 6e-84, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ER++T+P+ +VLL++++G I A+ EI+I A P S Sbjct: 4 LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESSNGQTNILATDLEIQINTAGPESQT 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L + A +S + + + G S F LQ+ P +FP Sbjct: 64 GDFRITTNAKKFQDILRALPESAIVSL---DWADNRLTLKAGKSRFALQTLPAEDFPLMS 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + F L KN++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGHDVSTAFSLTQETFKNMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A++ K +I+PRK V E+ ++L++ + V L ++++ ++ ++ Sbjct: 179 AYATSQIEAELPKTE-VILPRKTVLELFKLLNNPSEQITVELLDNQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK V+ T+ A++R +I+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTDFLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ N+ + D++ +N S Sbjct: 298 NEQEEAREELEIAYQGSELEVGFNIGYLMDVLRNVHA-----DDMQLAFGDANRSTLFTI 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|229035148|ref|ZP_04189094.1| DNA polymerase III subunit beta [Bacillus cereus AH1271] gi|228728214|gb|EEL79244.1| DNA polymerase III subunit beta [Bacillus cereus AH1271] Length = 379 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN T+ I+ G S F L Sbjct: 61 DDGKEIVEVAQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|49476685|ref|YP_034362.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118475780|ref|YP_892931.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al Hakam] gi|196036084|ref|ZP_03103484.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|196041972|ref|ZP_03109259.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] gi|196045398|ref|ZP_03112629.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|218901208|ref|YP_002449042.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228918102|ref|ZP_04081630.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228930496|ref|ZP_04093496.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228931508|ref|ZP_04094418.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228949212|ref|ZP_04111480.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229094601|ref|ZP_04225668.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42] gi|229124993|ref|ZP_04254167.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201] gi|229187719|ref|ZP_04314855.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1] gi|254724148|ref|ZP_05185933.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055] gi|301051743|ref|YP_003789954.1| DNA polymerase III subunit beta [Bacillus anthracis CI] gi|49328241|gb|AAT58887.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] gi|118415005|gb|ABK83424.1| DNA polymerase III, beta subunit [Bacillus thuringiensis str. Al Hakam] gi|195991251|gb|EDX55219.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|196023605|gb|EDX62281.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|196027227|gb|EDX65847.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] gi|218537161|gb|ACK89559.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228595787|gb|EEK53471.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1] gi|228658494|gb|EEL14160.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201] gi|228688848|gb|EEL42679.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42] gi|228810495|gb|EEM56848.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228828151|gb|EEM73875.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228829215|gb|EEM74852.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228841582|gb|EEM86698.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|300373912|gb|ADK02816.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis str. CI] Length = 379 Score = 315 bits (808), Expect = 6e-84, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|1706497|sp|P52023|DPO3B_SYNE7 RecName: Full=DNA polymerase III subunit beta gi|974615|gb|AAA75109.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 7942] Length = 375 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 194/392 (49%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + PV +VLL A+ G L + A + I + Sbjct: 1 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V+ G+IT+ A LL DIV +L + + ++ + T +S G + ++ EF Sbjct: 61 AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + +L++S L + T FA + +E + L G+ + + L+ ATDG Sbjct: 118 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEF--AATDG 175 Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235 HRLAV + + A A ++ VP +A+ ++ R+++ D ++ + + + Sbjct: 176 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293 ++ R +DG++PNY +IP ++ + V+ L A++R+++++ + A++LSL ++ Sbjct: 236 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L + VD D+G E++ P++I FN +YL E + +++ + + +L+S+ Sbjct: 296 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTD-----IQIQLNSN 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S V + V Y++MP+++ Sbjct: 351 TSPVVLSPLGP---------VKITYLVMPIQL 373 >gi|300866651|ref|ZP_07111338.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506] gi|300335360|emb|CBN56498.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506] Length = 387 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 102/403 (25%), Positives = 191/403 (47%), Gaps = 36/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLL A++ + + + I + Sbjct: 1 MKLICTQSDLNSNLSLVSRAVPSRPTHPVLANVLLVADEKTQRVSLTGFDLSLGIRTSFA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A VD GS T+ A LL DI+ +L DG ++ ++ + ++ EF Sbjct: 61 AQVDEGGSFTLPAKLLNDIISRLPDGEI--SLDDDAGEAIATVTSSSGKYTVRGMGPEEF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E E L L ++ T FA + +E + L G+ + ++ L+ ATDG Sbjct: 119 PELPEIEGGELINLPPEALIAGLKGTLFATSPDETKQVLTGVHLKVQQDSLEF--AATDG 176 Query: 179 HRLAVAEVD------------IVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLS 224 HRLAV E + + + I VP KA+ EI +++++ V + L Sbjct: 177 HRLAVVETAKVSDREYDEASLPTQESSAIFEITVPAKALREIEKMVAAGQSSEPVALHLD 236 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 + +I ++ R ++G++PNY+ ++P S ++ + + +L AV+R+++++ + Sbjct: 237 QGQIVFEWADQRLTTRTLEGQYPNYRQLLPRSFERLITLERRSLLAAVERIAVLADQKNN 296 Query: 285 AVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +K S+ + K+ ++VD D+G ESM+ + +DI FN KYL++I+ S Sbjct: 297 ILKCSIDAENQKVTLSVDAKDVGSGTESMSAQISGESIDIAFNVKYLIDILKTAPS---- 352 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ + + V IR VNA +++MP+++ Sbjct: 353 -PEIQMQLNEATAPVIIRP---------LGGVNATFLVMPVQL 385 >gi|239930174|ref|ZP_04687127.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] gi|291438516|ref|ZP_06577906.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672] gi|291341411|gb|EFE68367.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672] Length = 376 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 165/390 (42%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A DG L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + V++ A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMPNA-TGTVPGEVFSSAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235 AV E + ++ +VP K + + + L+S D + E I Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGDQVILALSGSGAGEGLIGFEGAGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G+ P Y+ + P + + +AV RV++++ R V+LS L Sbjct: 234 RTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + D +A+E ++ + I FN +LL+ + I S +S Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + Y++MP+R+ Sbjct: 348 PALLSGR---PAVDAEADEAYKYLIMPVRL 374 >gi|148238337|ref|YP_001223724.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7803] gi|147846876|emb|CAK22427.1| DNA polymerase III beta subunit [Synechococcus sp. WH 7803] Length = 389 Score = 315 bits (808), Expect = 7e-84, Method: Composition-based stats. Identities = 85/403 (21%), Positives = 186/403 (46%), Gaps = 34/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++P Sbjct: 1 MKLVCSQTELNSALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASVD G++T+ A L +IV +L + I+ ++ G +V ++ ++ ++ P +F Sbjct: 61 ASVDTSGAVTLPARLFGEIVSRLSSDSPITLTTDD-SGEQVELTSLSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L + T FA +++E + L G+ + +L A +TDG Sbjct: 120 PDLPLVENGTAVKLDPAALVRALRSTLFASSSDEAKQLLTGVHLRF--DQTRLEAASTDG 177 Query: 179 HRLAVAEVD------------IVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLS 224 HRLAV VD A+ + ++ +P +++ E+ R+++ V + Sbjct: 178 HRLAVLSVDDALQDAIANEEAPDAEGSAGLAVTLPARSLREVERLMAGWKGSDPVSLFFE 237 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 ++ + ++ R ++G +PNY+ +IP S + + ++ +++R+++++ Sbjct: 238 RGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTMALDRRAFVASLERIAVLADQHNN 297 Query: 285 AVKL--SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 V++ S + ++ D D+G ES+ + I FN +Y+L+ + + + Sbjct: 298 VVRIISDPSKGLIQISADAQDVGSGSESLPAQIEGEEVQIAFNVRYVLDGLKAMDA---- 353 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +V ++ + + D Y++MP++I Sbjct: 354 -ERIVLSCNAPTTPAILSPADD--------GAGLTYLVMPVQI 387 >gi|42779083|ref|NP_976330.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987] gi|42734998|gb|AAS38938.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] Length = 379 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 GIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|218437347|ref|YP_002375676.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424] gi|218170075|gb|ACK68808.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424] Length = 394 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 99/408 (24%), Positives = 185/408 (45%), Gaps = 39/408 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK T +SD+ L R + + T P+ +VL A GL+ + A + I + Sbjct: 1 MKFTCSQSDLNTNLSLVSRAVSSRPTHPILGNVLFVADLEQGLISLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-----GTEVNISHGDSNFYLQSF 113 A+++ G+IT+ A LL DIV +L +G + E T+V+I F L+ Sbjct: 61 ATIEEEGTITLPAKLLNDIVSRLPEGEITITLEPEEDEEDQEHTKVSIESVSGRFQLRGM 120 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +FP V +L S L ++ + FA +T+E + L G+ F + L Sbjct: 121 KADDFPELPTIANVDPLKLPISALTEGLKGSLFAASTDETKQVLTGVHF--AGQQDSLEF 178 Query: 174 VATDGHRLAVAEVDIV------------AQIAKMPSIIVPRKAVGEILRILSSKDSS--V 219 ATDGHRLAV + + + +I +P +A+ E+ RI+ + + Sbjct: 179 AATDGHRLAVVQTPTQETTEEEQTPPEPSSNLEGFAITIPARALRELERIMGMHKETDAI 238 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + + E ++ + S ++ R ++G +PNYQ +IP + + L +++RV++++ Sbjct: 239 TLYVDEGQVIFELGSQRLTSRKLEGAYPNYQQLIPRQFSRSATLERKRLLSSLERVALLA 298 Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + VK +LS +L ++V++ D+G A ES+ +I FN KYL++ + + Sbjct: 299 DQKNNLVKFTLSSEKGQLILSVESQDLGSARESIPAEIIGESGEIAFNVKYLMDGLKALP 358 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + +L+ V + Y++MP++I Sbjct: 359 ASD-----IQMQLNQEKQPVIFTP---------LGGLKMTYLVMPVQI 392 >gi|126651996|ref|ZP_01724188.1| DNA polymerase III subunit beta [Bacillus sp. B14905] gi|126591265|gb|EAZ85374.1| DNA polymerase III subunit beta [Bacillus sp. B14905] Length = 378 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 176/395 (44%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +LE L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI V A + +IVRKL G + +I G S F+L Sbjct: 61 EDGQQIIHIAETGSIVVQARMFNEIVRKLPTNDVEIHVT---PGFQTHIRSGKSEFHLIG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F + + +LK ++ T A+AT E R L G+ + I E L Sbjct: 118 SDAAEYPLLPELTEDQKFTIPADLLKTIIRETVLAVATSESRPVLTGVNWQIKNE--TLI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + S+++P K++ E+ ++L + V++ ++ ++ Sbjct: 176 CVATDSHRLARRKVQLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSL- 290 + RL++G +P+ +IP + +N +L QA+DR S+++ R V+ + Sbjct: 236 GDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVVRFEIL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++P++GK E + V + I F+ KY++E + I + VV + Sbjct: 296 GHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQD-----VVIQ 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R D+ +++P+R Sbjct: 351 FTGAMRPFILRSVHDDAI---------LQLILPVR 376 >gi|163838771|ref|YP_001623176.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC 33209] gi|162952247|gb|ABY21762.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC 33209] Length = 408 Score = 315 bits (807), Expect = 8e-84, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 177/386 (45%), Gaps = 18/386 (4%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K VER + + + A R + + +PV +LL+A+ G L + + EI IPA + Sbjct: 36 KFRVERDVLNDAVSWAARALSPRPPVPVLSGLLLKASAGTLSLSSFDYEISARLEIPADI 95 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+I VS LL DI R L + + G++V ++ +S F L + PE+++P Sbjct: 96 AEEGTILVSGRLLADICRSLPSAP----VEVSTDGSKVILTCRNSRFNLATMPEADYPEL 151 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + S +A V + A + ++ L G+ I ++ + L +ATD +RL Sbjct: 152 PALPKI-SGTVAGDAFAKAVTQVTVAASKDDTLPILAGVKVEIEDDLITL--LATDRYRL 208 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 A+ E++ + + S +V K + E+ + L + ++ +S I + Sbjct: 209 AMRELNWKPAVPGISTSALVKAKTLSEVAKTLGGAGEINISLSEDSELIGFESGGRRTTS 268 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+DG++P +++ P + V + L +AV RV++++ R V+L+ + ++ + Sbjct: 269 LLVDGDYPKIRSLFPENTPIHATVETSALVEAVRRVALVA-ERNTQVRLAFTDGQVGLDA 327 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +A E++ + + FN YL E ++ S V F S+ + Sbjct: 328 GTGEDAQASEALEAALTGEEITVAFNPHYLSEGLNAFESK-----YVRFSFTSAPKPAMM 382 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D + D++ + Y++MP+R+ Sbjct: 383 TAQDS---IDGDDQDHYRYLVMPVRL 405 >gi|88809363|ref|ZP_01124871.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805] gi|88786582|gb|EAR17741.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805] Length = 389 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 87/403 (21%), Positives = 187/403 (46%), Gaps = 34/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++P Sbjct: 1 MKLVCSQTELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASVD G++T+ A L +IV +L + I+ ++ +V ++ ++ ++ P +F Sbjct: 61 ASVDTSGAVTLPARLFGEIVSRLSSDSPITLATDDT-SEQVELTSLSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L + L + T FA +++E + L G+ + +L A +TDG Sbjct: 120 PDLPLVENGTAIKLDPAALVRALRSTLFASSSDEAKQLLTGVHLRF--DQTRLEAASTDG 177 Query: 179 HRLAVAEVD------------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLS 224 HRLAV VD A + ++ +P +++ E+ R+++ + V + Sbjct: 178 HRLAVLSVDDALKDAIAADDSAEADESAALAVTLPARSLREVERLMAGWKGNDPVSLFFE 237 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 ++ + ++ R ++G +PNY+ +IP S + + ++ +++R+++++ Sbjct: 238 RGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTIGLDRRAFVASLERIAVLADQHNN 297 Query: 285 AVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 V++S S + ++ D D+G ES+ + I FN +Y+L+ + + Sbjct: 298 VVRISSDPSKGLIQISADAQDVGSGSESLPAQIEGDEVQIAFNVRYVLDGLKAMDG---- 353 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V ++ + + +D S Y++MP++I Sbjct: 354 -DRIVLSCNAPTTPAILSPEDDGS--------GLTYLVMPVQI 387 >gi|149275921|ref|ZP_01882066.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39] gi|149233349|gb|EDM38723.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39] Length = 374 Score = 315 bits (807), Expect = 9e-84, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 185/386 (47%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + DG L I A+ + +T ++ Sbjct: 1 MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGSLTISATDLQTSMTTSLAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V A +L D ++ L D F ++ + IS GD + L +FP Sbjct: 61 SKEGGKVAVPAKILLDTLKTLPDQPV--SFNIDDSSFSIEISAGDGKYKLSGENGDDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L +SVL + +T FA++ +E+R + G+F ++E+++ VATD H+ Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSNDELRPAMTGVFCQLSEQNITF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + ++ K S I+P+KA+ + L S D +V V + + +++++ R Sbjct: 177 L-VRYRRMDSKGDKSSSFILPKKALTLLKAALPSTDVNVSVDYNATSAFFKFDNINLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ + RV I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E ++ Y ++I FN ++L+E++ N+S +EV L + N + + Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNARFLIEMLSNLSG-----EEVTLELSTPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D N ++MP+ + Sbjct: 351 IPQ------TNDENENVLMLVMPVML 370 >gi|87123348|ref|ZP_01079199.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917] gi|86169068|gb|EAQ70324.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917] Length = 390 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 93/404 (23%), Positives = 189/404 (46%), Gaps = 35/404 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++P Sbjct: 1 MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSLP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G++T+ A LL +IV +L + ++ ++ G +V ++ + ++ P EF Sbjct: 61 ASVESSGAVTLPARLLGEIVSRLSSESPVTLASDD-AGEQVELTSLSGCYQMRGMPADEF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + +L ++ L + T FA + +E + L G+ + L A +TDG Sbjct: 120 PELPLVENGTALKLEAAALARALRATLFASSADEAKQLLTGVHLRFSGS--HLEAASTDG 177 Query: 179 HRLAVAEV-------------DIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSL 223 HRLAV V + A S+ +P +++ E+ R+++S D V + Sbjct: 178 HRLAVLAVTDALREAPTLEGGEANDGEAADLSVTLPARSLREVERLVTSWKGDDPVTLFY 237 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 ++ + ++ R ++G +PNY+ +IP S + ++ A++RV++++ Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDSFSRVFELDRRGFVAALERVAVLADQHN 297 Query: 284 QAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 V++S + + ++ D D+G ES+ + P+ I FN +Y+L+ + + + Sbjct: 298 NVVRISSEPESGLVQISADAQDVGSGSESLASDLSGEPVQIAFNVRYVLDGLKAMEA--- 354 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + R ++ + + D DS Y++MP++I Sbjct: 355 --DRIKLRCNAPTTPAVLSAADDDS--------GFTYLVMPVQI 388 >gi|206975877|ref|ZP_03236788.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217957583|ref|YP_002336125.1| DNA polymerase III subunit beta [Bacillus cereus AH187] gi|222093776|ref|YP_002527823.1| DNA polymerase iii subunit beta [Bacillus cereus Q1] gi|229142239|ref|ZP_04270763.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26] gi|229199686|ref|ZP_04326329.1| DNA polymerase III subunit beta [Bacillus cereus m1293] gi|206745971|gb|EDZ57367.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217065811|gb|ACJ80061.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|221237821|gb|ACM10531.1| DNA polymerase III, beta subunit [Bacillus cereus Q1] gi|228583781|gb|EEK41956.1| DNA polymerase III subunit beta [Bacillus cereus m1293] gi|228641257|gb|EEK97564.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26] gi|324323996|gb|ADY19256.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 379 Score = 315 bits (807), Expect = 1e-83, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVNQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 GIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|242243254|ref|ZP_04797699.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144] gi|242233203|gb|EES35515.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144] gi|319399913|gb|EFV88159.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis FRI909] gi|329735734|gb|EGG72015.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU028] Length = 377 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + + ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLEDES-ENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E +N + I FN KY+++ + I +DEV Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375 >gi|224827187|ref|ZP_03700282.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002] gi|224600580|gb|EEG06768.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002] Length = 368 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 107/385 (27%), Positives = 194/385 (50%), Gaps = 22/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61 + ER +L+ L I+ER++T+P+ +VL++ DG + A+ EI+IT + Sbjct: 4 LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKDGAVGFLATDLEIQITTASAETLP 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 +T SA L DI+R + + +S +++ + + G S F LQ+ P +FP Sbjct: 64 GESFRLTTSAKKLQDILRAIPGNSTVSLEQQD---NRLTLKAGKSRFNLQTLPAEDFPLL 120 Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +F L LK L+ + ++MA ++IRYYLNG+ ++ ++L VATDGHR Sbjct: 121 SVNGTPEATFSLPQKELKRLISQVQYSMAVQDIRYYLNGLLMQTDDNQVRL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A +I + K +I+PRK + E+ ++L D + + + +++ S + + Sbjct: 179 LAFAAAEIDTSLPK-AEVILPRKTIIELYKLLQDSDEPITIEVLANQVRFTFGSTVIISK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG+FP+Y VIP NDK ++ A+ R +I+++ + + V+L L L + Sbjct: 238 VVDGKFPDYNRVIPLDNDKLFLIDRLTFLHALQRAAILANEKFRGVRLVLKPGSLSILCT 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + Y ++I FN YLL+++ N+ + + + +N S + Sbjct: 298 NSEQEEAEEELEIDYGGGELEIGFNINYLLDVLTNLPA-----ETLQLAFGDANRSTLVT 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D Y++MPMRI Sbjct: 353 IPD---------YSQFKYIVMPMRI 368 >gi|255533120|ref|YP_003093492.1| DNA polymerase III subunit beta [Pedobacter heparinus DSM 2366] gi|255346104|gb|ACU05430.1| DNA polymerase III, beta subunit [Pedobacter heparinus DSM 2366] Length = 374 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 185/386 (47%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + DG L I A+ + +T ++P Sbjct: 1 MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGNLTISATDLQTSMTTSLPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V A +L D ++ L D F ++ + IS GD + L +FP Sbjct: 61 SKEGGKVAVPARILLDTLKTLPDQPI--SFNIDDSTFSIEISAGDGKYKLSGENGDDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L +SVL + +T FA++++E+R + G+F ++ D + VATD H+ Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSSDELRPAMTGVFCQLS--DQHITFVATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + ++ K S I+P+KA+ + L S D +V V + + E++++ R Sbjct: 177 L-VRYRRMDSKADKSSSFILPKKALTLLKAALPSTDINVSVDYNATSAFFKFENINLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ + RV I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E ++ Y ++I FN K+L+E++ N+S +EV L + N + + Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNAKFLIEMLSNLSG-----EEVTLELSTPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + ++MP+ + Sbjct: 351 IPQ------TNDENEDVLMLVMPVML 370 >gi|153875362|ref|ZP_02003200.1| DNA polymerase III, beta chain [Beggiatoa sp. PS] gi|152068174|gb|EDN66800.1| DNA polymerase III, beta chain [Beggiatoa sp. PS] Length = 375 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 118/394 (29%), Positives = 208/394 (52%), Gaps = 28/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R ++L L ++E++ T+P+ + L+ D L A+ E+EI ++P S Sbjct: 1 MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60 Query: 61 VDV-----CGSITVSAHLLYDIVRKLQDG--AQISFFKENELGTEVNISHGDSNFYLQSF 113 D G T+ A +DI R L D A+I E+E ++ + G S F LQ+ Sbjct: 61 SDNLGTDHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDE-TSQAIVKAGKSKFKLQTL 119 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P +FP+ E + F ++ LK+L+ +T F +A ++RYYL G+ I+ D K+ Sbjct: 120 PADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEIS--DGKISL 177 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNI 232 + TDGHR+AVA+ D + + +I+PRKAV E+ ++L+ + + V+VS ++ I + Sbjct: 178 IGTDGHRMAVAQHDFEGE--ENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKL 235 Query: 233 -ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 +SL M +LIDG FP++ VIP +K + L+QA+ R SI+S+ + + ++ +L+ Sbjct: 236 SDSLIMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLT 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + L ++ N +A E + V Y +++ FN Y+L+ I+ IS+ V Sbjct: 296 ENLLTISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKT-----VQLAFV 350 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 NSS I +D + ++ +++MPMR+ Sbjct: 351 DQNSSCLIMEEDNE---------DSKFIVMPMRL 375 >gi|319949430|ref|ZP_08023491.1| DNA polymerase III subunit beta [Dietzia cinnamea P4] gi|319436892|gb|EFV91951.1| DNA polymerase III subunit beta [Dietzia cinnamea P4] Length = 391 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 97/397 (24%), Positives = 164/397 (41%), Gaps = 29/397 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V R D + + R + + ++P+ VLL+A D L I E ++PA V Sbjct: 8 FRVTREDFADSVAWVARTLPSRPSVPILGGVLLEA-DSGLTISGFDYETSAQVSVPAEVS 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GS VS LL DI R L D ++ I+ G + F L + P ++P Sbjct: 67 EPGSTLVSGRLLADIARALPDRPVEVVVT----AQKMYITCGSAKFTLPTMPVEDYPQLP 122 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + V + A ++ L GI I E ++ +ATD RLA Sbjct: 123 AMPEV-TGSAEVDAFSEAVGQVVVAAGKDDTLPMLTGIRMEI--EGTRVTLIATDRFRLA 179 Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234 + E D +++P KA+ E+ R V +SL E + + + Sbjct: 180 IREFDWEPAREDVTVEVLIPAKALSEVTRSAGHG-GRVDLSLGAGSNVGAEGILGVLVSG 238 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP + ++P + V L QA+ RV++++ R V+++ S + Sbjct: 239 QRTTTRLLDAEFPKVRQLLPPQHTSVAVVEVDALVQAIKRVALVA-DRGVQVRMAFSEGE 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ D +A ES+ V + P+ I FN YLL+ + +I S V F + Sbjct: 298 LALSAGGDDAAQANESLPVDFVGEPLTIAFNPGYLLDGLGSIHSA-----RVAFGFTQPS 352 Query: 355 SSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 +R + + + + Y+LMP+R+ Sbjct: 353 RPAVLRPAPEALPEPGADGAIAPVESDHTYLLMPVRL 389 Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 23/182 (12%), Positives = 66/182 (36%), Gaps = 17/182 (9%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F + + V + + L G+ + L D A+ Sbjct: 4 TDPTFRVTREDFADSVAWVARTLPSRPSVPILGGVLLEADSG---LTISGFDYE--TSAQ 58 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244 V + A++++ S +V + + +I R L D V+V ++ ++++ S ++ + Sbjct: 59 VSVPAEVSEPGSTLVSGRLLADIARALP--DRPVEVVVTAQKMYITCGSAKFTLPTMPVE 116 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 ++P +P + +AV +V + + +++ + ++ + Sbjct: 117 DYPQ----LPAMPEVTGSAEVDAFSEAVGQVVVAAGKDDTLPMLTGIRMEIEGTRVTLIA 172 Query: 300 DN 301 + Sbjct: 173 TD 174 >gi|260221775|emb|CBA30676.1| DNA polymerase III subunit beta [Curvibacter putative symbiont of Hydra magnipapillata] Length = 362 Score = 314 bits (806), Expect = 1e-83, Method: Composition-based stats. Identities = 97/341 (28%), Positives = 181/341 (53%), Gaps = 8/341 (2%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VLL+ L++ S EI+I D Sbjct: 4 LKATQDKVLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGD 63 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + T+ A L DI+R + +S +++ + G S F LQ+ +FP Sbjct: 64 TGSFTTTIGARKLIDILRTMPGDQTVSLES---SQSKIILKGGKSKFTLQTMQAEDFPLV 120 Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + F + LK+L+ + FAMA +IRYYLNGI F + L L VATDGHR Sbjct: 121 QESASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A + ++ K +I+PRK V E+ R+LS + ++++ + ++ + + + Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FP+Y VIP ++ + + L + + R +I++S + + V+L++ L + + Sbjct: 238 LVEGKFPDYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 N + +A++ +++ Y ++I FN YL++ + N+S D V Sbjct: 298 NAEQEEAVDELDIDYGGDSIEIGFNVTYLIDALSNMSQDMV 338 >gi|152973856|ref|YP_001373373.1| DNA polymerase III subunit beta [Bacillus cereus subsp. cytotoxis NVH 391-98] gi|152022608|gb|ABS20378.1| DNA polymerase III, beta subunit [Bacillus cytotoxicus NVH 391-98] Length = 381 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 186/398 (46%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDSDISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 EDGKEIVEVSQSGSIVLQAKYFSEIVKKLPKD-IVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRTAKIEGHNISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STFEQKMLEISSNSPEIGKVVEEVQCEKIDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 KISFTGAMRPFLIRTVNDNSI---------IQLILPVR 379 >gi|323487686|ref|ZP_08092944.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2] gi|323398420|gb|EGA91208.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2] Length = 378 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 178/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R ++E L + + K TIP+ + + + + + S +I I IPA Sbjct: 1 MKFEIKRERLVEGLNDVMKAVSSKTTIPILTGIKMDVSSEGMRLTGSDSDITIQTFIPAE 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 D GSI + A + +I+RKL E + +I G S F+L Sbjct: 61 EDGEQIIQVTNGGSIVLQAKVFGEIIRKLPTNEV---EIEITGNFQTHIRSGKSEFHLIG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + F + + +LK + T FA+++ E R L G+ + + D +L Sbjct: 118 LDAMDYPQLPDIQDDRLFTIPADLLKTINRETVFAVSSSETRPVLTGVHWEVK--DGELV 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA + + S+++P K++ E+ +IL +V++ ++ ++ Sbjct: 176 CVATDSHRLARRKTKLETLPEGEYSVVIPGKSLTELNKILDDTSEAVEIVMTNQQVLFKS 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + + RL++G +P+ +IP + VN +L QA+DR S+++ R V+ S Sbjct: 236 KHILFFSRLLEGNYPDTSRLIPAEYKTTVTVNGRSLLQAIDRASLLAREERNNVVRFSAK 295 Query: 292 SDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++P++GK E + + I F+ K++++ + I + VV + Sbjct: 296 EGTDVEVSSNSPEVGKVEEQLQAQSIEGEELKISFSAKFMMDALKAIDGQD-----VVIQ 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ DS +++P+R Sbjct: 351 FTGAMRPFILKSALDDSI---------LQLILPVR 376 >gi|170761565|ref|YP_001785337.1| DNA polymerase III subunit beta [Clostridium botulinum A3 str. Loch Maree] gi|169408554|gb|ACA56965.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 367 Score = 314 bits (805), Expect = 1e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A L +I+RKL + E+ + I +S F L EFP+ Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + + LKN+++ T FA A +E R L G+ F I ++ L L VA DG+R Sbjct: 118 PPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + ++P K + E+ +IL + +V ++ + + I +I + R Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF +Y+++IP + ++ L +++R S+M+ VK S+DK+ +T Sbjct: 234 LLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E + V + I FN KYLL+++ + DDEVV SS S I Sbjct: 294 -NSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + N Y+++P+R+ Sbjct: 348 KNTELN---------NCTYLVLPVRL 364 >gi|223043416|ref|ZP_03613462.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14] gi|222443205|gb|EEE49304.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14] Length = 377 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVEISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + + I FN KY+++ + I +DEV Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375 >gi|229083316|ref|ZP_04215678.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44] gi|228699991|gb|EEL52614.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44] Length = 381 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIILQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFQIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIESHTISNEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ ++P++GK +E + + I F+ KY+++ + + S E+ Sbjct: 296 STLEEQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KISFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|229099917|ref|ZP_04230840.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29] gi|229100790|ref|ZP_04231610.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28] gi|229118980|ref|ZP_04248325.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3] gi|228664505|gb|EEL20001.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3] gi|228682629|gb|EEL36686.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28] gi|228683532|gb|EEL37487.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29] Length = 381 Score = 314 bits (805), Expect = 2e-83, Method: Composition-based stats. Identities = 94/398 (23%), Positives = 188/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDANISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 EDGKEIVEIGQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + + L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSE--LI 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I A ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADAFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQKMLEISSNSPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KISFTGAMRPFLIRTVNDDSITQ---------LILPVR 379 >gi|51891140|ref|YP_073831.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM 14863] gi|51854829|dbj|BAD38987.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM 14863] Length = 368 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 187/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + + L R + KNTIPV V L A G L I+A+ E+ I P Sbjct: 1 MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEAVTPCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + A D++R++ G + + G S + + F +FP+ Sbjct: 61 VISEGETVLPARYFADLIRRIPYGNIELSV--DYHNHVATLRWGRSQYVIHGFAADQFPT 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +F + S+L++L+ +T FA +E + +L G+ F + ++ L ATDG R Sbjct: 119 LPDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKLRDDLLT--GTATDGIR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +A AE S+I+P +++ E+ R+L+ +DS V V+++ +++ ++ + + Sbjct: 177 IAYAEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL++G++P+ ++P E + +A++R ++++ + AVK+S +DK+ +T Sbjct: 237 RLLEGQYPDVMRLVPQHYPTEAVLPGAEFMEALERATLIT--KDGAVKISFQTDKVTITS 294 Query: 300 DNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + P++G+ E + V P+DI FN +YLL+ + + + + F+ S + Sbjct: 295 NTPEVGQVYEELAVTSMAGDPLDIGFNARYLLDFLKVLE-----EKQFRFQCSGSRNPAR 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + D YV++P+ Sbjct: 350 LMPADSSQ---------FLYVVLPL 365 >gi|27466920|ref|NP_763557.1| DNA polymerase III subunit beta [Staphylococcus epidermidis ATCC 12228] gi|57865930|ref|YP_190093.1| DNA polymerase III subunit beta [Staphylococcus epidermidis RP62A] gi|251811365|ref|ZP_04825838.1| DNA polymerase III subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|282874722|ref|ZP_06283601.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135] gi|293367579|ref|ZP_06614232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|38604836|sp|Q8CQK6|DPO3B_STAES RecName: Full=DNA polymerase III subunit beta gi|81672839|sp|Q5HK00|DPO3B_STAEQ RecName: Full=DNA polymerase III subunit beta gi|27314462|gb|AAO03599.1|AE016744_2 DNA polymerase III beta subunit [Staphylococcus epidermidis ATCC 12228] gi|57636588|gb|AAW53376.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis RP62A] gi|251805114|gb|EES57771.1| DNA polymerase III subunit beta [Staphylococcus epidermidis BCM-HMP0060] gi|281296438|gb|EFA88953.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135] gi|291318292|gb|EFE58685.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus epidermidis M23864:W2(grey)] gi|329724168|gb|EGG60686.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU144] gi|329736046|gb|EGG72319.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU045] Length = 377 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 187/394 (47%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E +N + I FN KY+++ + I +DEV Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375 >gi|116074276|ref|ZP_01471538.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916] gi|116069581|gb|EAU75333.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916] Length = 390 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 87/404 (21%), Positives = 182/404 (45%), Gaps = 35/404 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A+ G L + + I + Sbjct: 1 MKLVCSQSELNSALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G++T+ A LL +IV +L + I+ ++ +V ++ ++ +++ P EF Sbjct: 61 ASVEASGAVTLPARLLGEIVSRLSADSPITLATDD-ASEQVELTSLSGSYQMRAMPADEF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + ++ L + T FA + +E + L G+ +L+ A +TDG Sbjct: 120 PDLPLVENGTALRVEAASLVQALRGTLFASSADEAKQLLTGVHLRFQARNLE--AASTDG 177 Query: 179 HRLAVAEVDI-------------VAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSL 223 HRLAV V + ++ +P +++ E+ R+++ D V + Sbjct: 178 HRLAVLAVKDALQDDPSGAPDADTTTEDGVLAVTLPARSLREVERLIAGWKGDDPVTLFY 237 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 ++ + ++ R ++G +PNY+ +IP + + + A++RV++++ Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDGFTRTIDLERRPFMAALERVAVLADQHN 297 Query: 284 QAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341 V++S + ++ D D+G ES+ M I FN +Y+L+ + + + Sbjct: 298 NVVRISTEPTAGLVQISADAQDVGSGSESLPATLVGDAMQIAFNVRYVLDGLKAMEA--- 354 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +V + ++ + + D S Y++MP++I Sbjct: 355 --DRIVLQCNAPTTPAILTPADDTS--------GFTYLVMPVQI 388 >gi|325954048|ref|YP_004237708.1| DNA polymerase III subunit beta [Weeksella virosa DSM 16922] gi|323436666|gb|ADX67130.1| DNA polymerase III, beta subunit [Weeksella virosa DSM 16922] Length = 372 Score = 314 bits (804), Expect = 2e-83, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 172/386 (44%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ + +I NT+P+ + L + L I S E I+ Sbjct: 1 MKFIVSSNTLLKNVNTIGGVINNNNTLPILDNFLFELKGNELTITGSDLETTISTTFEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I V + +L D ++ K+ G + I N+ L SE+P Sbjct: 61 SEDEGKIAVPSKILTDTLKTFPAQPLTFIQKD---GNTLEIVSEQGNYQLAYEDASEYPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T + E + +L +SV+ + +T FA +E+R + G+ F + VATD HR Sbjct: 118 TPDVEEAHLTKLPASVISEAILKTIFATGNDELRPIMTGVLFQAQPD--VFNFVATDAHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L Q + I+P+K + + IL + V + +++ +++ ++ R Sbjct: 176 LVKYSRT-GLQSVEAAEYIMPKKPLNLLKNILGGNNDEVTIEYNQTNTRFTFQNIVLTCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY VIP N L +N ++ RV+I S+ ++L L + L ++ + Sbjct: 235 LIDGKYPNYDAVIPKENPNVLTINRNLFLSSLKRVAIFSNKTTNQIRLKLIGNSLTISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + YN + I FN K+L+E+++N+ S D++ + N + I Sbjct: 295 DVDFANKAEERLPCEYNGTDLQIGFNSKFLIEMLNNLQS-----DDITLEMSEPNRAGII 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + ++MP+ + Sbjct: 350 KPVD-----GLEEGEEILMLVMPVML 370 >gi|242372601|ref|ZP_04818175.1| DNA polymerase III subunit beta [Staphylococcus epidermidis M23864:W1] gi|242349656|gb|EES41257.1| DNA polymerase III subunit beta [Staphylococcus epidermidis M23864:W1] Length = 377 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 62 IDGEDIVDISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DASENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N + A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGENNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E +N + I FN KY+++ + I +DEV Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375 >gi|31791179|ref|NP_853672.1| DNA polymerase III subunit beta [Mycobacterium bovis AF2122/97] gi|121635885|ref|YP_976108.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121635912|ref|YP_976135.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224988385|ref|YP_002643052.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo 172] gi|32700067|sp|O33914|DPO3B_MYCBO RecName: Full=DNA polymerase III subunit beta gi|31616764|emb|CAD92864.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium bovis AF2122/97] gi|121491532|emb|CAL69986.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|121491559|emb|CAL70016.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str. Pasteur 1173P2] gi|224771498|dbj|BAH24304.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo 172] Length = 402 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R + + + + + +PV VLL +D L I E+ + A + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GS+ VS LL DI R L + + G V ++ G++ F L + P ++P+ Sbjct: 75 SPGSVLVSGRLLSDITRALPNKPVGVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + + + + A ++ L GI I E + L ATD RLA Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187 Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234 V E+ A + +++VP K + E + S V++SL + + ++ Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ + Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D+G+A E + V Y P+ I FN YL + + ++ S + V F ++ Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360 Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400 Score = 44.5 bits (104), Expect = 0.029, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 69/182 (37%), Gaps = 16/182 (8%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F L + V + L+G+ ++ L + D A A+ Sbjct: 11 TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244 V A+I S++V + + +I R L +K V V + +R+ L + S+ + Sbjct: 69 V--GAEIVSPGSVLVSGRLLSDITRALPNK--PVGVHVEGNRVALTCGNARFSLPTMPVE 124 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 ++P +P ++ + +A+ +V+I + +++ + + + + Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query: 300 DN 301 + Sbjct: 181 TD 182 >gi|315925612|ref|ZP_07921822.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter alactolyticus ATCC 23263] gi|315621153|gb|EFV01124.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter alactolyticus ATCC 23263] Length = 369 Score = 313 bits (803), Expect = 2e-83, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 193/386 (50%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++D++ L R + K T+P+ +L + D L + ++ EI I +IPA Sbjct: 1 MKFDCSKTDLISALSLVSRGVSNKTTMPILEGILFEVYDHRLFLTSTNLEISIQTSIPAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + ++ ++++VRKL F E ++ ++ S F ++ EFP Sbjct: 61 VEQDGELILQSNFIFELVRKLSGEDV---FFEQMAQHQLKMTCECSTFTIKGMASDEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + YSF + ++ LK ++ T FA+A +E L G+ I ++ L + +A DG+R Sbjct: 118 FPKVIDDYSFTVDAAALKAMIHGTIFAVAIKENIPVLTGLKLEIEQDQLTM--IALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I + SIIVP K++ E+ ++LS V+V+LS+++I + + R Sbjct: 176 LALRRGALSTPINEAVSIIVPGKSMMELDKLLSGVSGDVQVNLSKAQIFFTMGDTQFTSR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF NY+++IP + E+ ++ L + +R ++++ + +K++ D+L ++ Sbjct: 236 LLEGEFINYKHIIPKDKNTEVVIDKKLLLDSTERAALLAREGKNNLIKMAFGIDELTLSS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + + + I FN K++++ + I +++ + + I Sbjct: 296 -NAEIGDVHEVIPIQKTGDDLKIAFNSKFIIDALRAID-----QEQITINMTNPVGPAVI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D Y+++P+R+ Sbjct: 350 LPEDN----------RYVYLILPVRV 365 >gi|163938015|ref|YP_001642899.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4] gi|229136316|ref|ZP_04265063.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196] gi|163860212|gb|ABY41271.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis KBAB4] gi|228647188|gb|EEL03276.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196] Length = 381 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 188/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ + P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|167629173|ref|YP_001679672.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum Ice1] gi|167591913|gb|ABZ83661.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum Ice1] Length = 371 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 183/387 (47%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R ++LE + R + K T PV + L+A D L + A+ E+ I IP Sbjct: 1 MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIPVR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS V+A + ++ R+L +G N + + + S L + EFP Sbjct: 61 TKRTGSTVVNARIFNEMARRLPEGPITFCV--NGDNPALKVRYHGSELTLNTMNPQEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + K + FA +++E R + G+ + I E+++ VATD HR Sbjct: 119 LPAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRW--VATDTHR 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA ++ + + + +I+ K + ++ R+L ++ ++++L+ S+ L + L + + Sbjct: 177 LALLSGQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVIL 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKLCM 297 R+I+G++P YQ VIP + L + L +AVDR S+ S +KLS + L + Sbjct: 237 RIIEGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTI 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++P++G E + V + P+ I FN++YL +++ + + ++V L + + Sbjct: 297 RSNSPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDT-----EQVRLDLFGTLAPG 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +R +D + Y+++P+R Sbjct: 352 LLRPVGED---------HYLYLIVPVR 369 >gi|289551835|ref|YP_003472739.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis HKU09-01] gi|289181366|gb|ADC88611.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis HKU09-01] Length = 377 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLPGNEVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S + + + +++++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DNSENKNVIIPGKALAELNKIMSDSEEDIDIFFAQNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 ++ + RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +D + ++ +P++G E +N + I FN KY+++ + I +DEV Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAID-----NDEVEIEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKADDSVTQ---------LILPIR 375 >gi|260184855|ref|ZP_05762329.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CPHL_A] gi|289445527|ref|ZP_06435271.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CPHL_A] gi|289418485|gb|EFD15686.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CPHL_A] Length = 402 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R + + + + + +PV VLL +D L I E+ + A + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GS+ VS LL DI R L + + G V ++ G++ F L + P ++P+ Sbjct: 75 SPGSVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + + + + A ++ L GI I E + L ATD RLA Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187 Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234 V E+ A + +++VP K + E + S V++SL + + ++ Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ + Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D+G+A E + V Y P+ I FN YL + + ++ S + V F ++ Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360 Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 361 KPALLRPVSGDDRPVAGLNGDGPFPAVSTDYVYLLMPVRL 400 Score = 44.1 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F L + V + L+G+ ++ L + D A A+ Sbjct: 11 TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244 V A+I S++V + + +I R L +K V V +R+ L + S+ + Sbjct: 69 V--GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 ++P +P ++ + +A+ +V+I + +++ + + + + Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query: 300 DN 301 + Sbjct: 181 TD 182 >gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Rv] gi|15839374|ref|NP_334411.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CDC1551] gi|148659759|ref|YP_001281282.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra] gi|148821193|ref|YP_001285947.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis F11] gi|167969465|ref|ZP_02551742.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra] gi|215405986|ref|ZP_03418167.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 02_1987] gi|215413856|ref|ZP_03422521.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|215425188|ref|ZP_03423107.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T92] gi|215432907|ref|ZP_03430826.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054] gi|215448275|ref|ZP_03435027.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85] gi|218755718|ref|ZP_03534514.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis GM 1503] gi|219555773|ref|ZP_03534849.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T17] gi|253796917|ref|YP_003029918.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 1435] gi|254233407|ref|ZP_04926733.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|254366462|ref|ZP_04982506.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|254548930|ref|ZP_05139377.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis '98-R604 INH-RIF-EM'] gi|260198986|ref|ZP_05766477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T46] gi|260203139|ref|ZP_05770630.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis K85] gi|289441369|ref|ZP_06431113.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46] gi|289552252|ref|ZP_06441462.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 605] gi|289567884|ref|ZP_06448111.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T17] gi|289572578|ref|ZP_06452805.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis K85] gi|289747772|ref|ZP_06507150.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis 02_1987] gi|289748464|ref|ZP_06507842.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T92] gi|289756061|ref|ZP_06515439.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054] gi|289760099|ref|ZP_06519477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85] gi|289764117|ref|ZP_06523495.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|294995610|ref|ZP_06801301.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 210] gi|297632470|ref|ZP_06950250.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN 4207] gi|297729439|ref|ZP_06958557.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN R506] gi|298527400|ref|ZP_07014809.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|306778290|ref|ZP_07416627.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu001] gi|306778820|ref|ZP_07417157.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu002] gi|306782608|ref|ZP_07420930.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu003] gi|306786976|ref|ZP_07425298.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu004] gi|306795596|ref|ZP_07433898.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu006] gi|306801571|ref|ZP_07438239.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu008] gi|306805780|ref|ZP_07442448.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu007] gi|306970177|ref|ZP_07482838.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu009] gi|306974409|ref|ZP_07487070.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu010] gi|307082117|ref|ZP_07491287.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu011] gi|307086728|ref|ZP_07495841.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu012] gi|313656768|ref|ZP_07813648.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN V2475] gi|3913519|sp|Q50790|DPO3B_MYCTU RecName: Full=DNA polymerase III subunit beta gi|3261513|emb|CAA16239.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE) [Mycobacterium tuberculosis H37Rv] gi|13879043|gb|AAK44225.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis CDC1551] gi|124603200|gb|EAY61475.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis C] gi|134151974|gb|EBA44019.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis str. Haarlem] gi|148503911|gb|ABQ71720.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis H37Ra] gi|148719720|gb|ABR04345.1| DNA polymerase III beta subunit dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis F11] gi|253318420|gb|ACT23023.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 1435] gi|289414288|gb|EFD11528.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46] gi|289436884|gb|EFD19377.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 605] gi|289537009|gb|EFD41587.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis K85] gi|289541637|gb|EFD45286.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T17] gi|289688300|gb|EFD55788.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis 02_1987] gi|289689051|gb|EFD56480.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis T92] gi|289696648|gb|EFD64077.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054] gi|289711623|gb|EFD75639.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase) [Mycobacterium tuberculosis GM 1503] gi|289715663|gb|EFD79675.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85] gi|298497194|gb|EFI32488.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 94_M4241A] gi|308213440|gb|EFO72839.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu001] gi|308328157|gb|EFP17008.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu002] gi|308332531|gb|EFP21382.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu003] gi|308336274|gb|EFP25125.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu004] gi|308343892|gb|EFP32743.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu006] gi|308347676|gb|EFP36527.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu007] gi|308351594|gb|EFP40445.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu008] gi|308352301|gb|EFP41152.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu009] gi|308356304|gb|EFP45155.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu010] gi|308360191|gb|EFP49042.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu011] gi|308363878|gb|EFP52729.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis SUMu012] gi|323717341|gb|EGB26546.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis CDC1551A] gi|326905761|gb|EGE52694.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis W-148] gi|328456708|gb|AEB02131.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis KZN 4207] Length = 402 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R + + + + + +PV VLL +D L I E+ + A + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GS+ VS LL DI R L + + G V ++ G++ F L + P ++P+ Sbjct: 75 SPGSVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + + + + A ++ L GI I E + L ATD RLA Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187 Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234 V E+ A + +++VP K + E + S V++SL + + ++ Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ + Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D+G+A E + V Y P+ I FN YL + + ++ S + V F ++ Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360 Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400 Score = 44.1 bits (103), Expect = 0.035, Method: Composition-based stats. Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F L + V + L+G+ ++ L + D A A+ Sbjct: 11 TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244 V A+I S++V + + +I R L +K V V +R+ L + S+ + Sbjct: 69 V--GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 ++P +P ++ + +A+ +V+I + +++ + + + + Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query: 300 DN 301 + Sbjct: 181 TD 182 >gi|326383910|ref|ZP_08205594.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL B-59395] gi|326197369|gb|EGD54559.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL B-59395] Length = 400 Score = 313 bits (803), Expect = 3e-83, Method: Composition-based stats. Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 39/411 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + +PV V+L A++ L++ E+ T I A Sbjct: 1 MKFRVVRDEFADAVAWVARSLPSRPPVPVLGCVVLTADEFGLQVAGFDYEVSATQVISAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G VS LL DI + L + G+ V IS G + F L + P ++P Sbjct: 61 VSESGKALVSGRLLADITKALPNKPVDVTID----GSRVAISCGSAKFSLPTMPVEDYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + + V + A ++ L G+ I + K+ ATD R Sbjct: 117 LPEVPQ-NTGSVPADLFSEAVSQVAIAAGKDDTLPMLTGVRVEIEGD--KVVLAATDRFR 173 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-------SESRIHLN 231 LAV E+ A + +VP K + E + +V+++ SE + + Sbjct: 174 LAVRELQWLPADAGASGAALVPAKTLSEAAKSAGADSTGNVELAFGAVHAIGSEGMLGIT 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + RL+D EFP ++ + P ++ V L +++ RVS+++ R V+L S Sbjct: 234 NNAKKTTTRLLDAEFPKFRQLFPANHTSIATVESAPLIESIKRVSLVA-ERGAQVRLDFS 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 SD + +T + GKA E + V + P+ I FN YLL+ + I + + V F Sbjct: 293 SDSVLLTAGGDEAGKAEEELPVQFYGEPIIIAFNPHYLLDGLAAIGT-----ETVEFGFT 347 Query: 352 SSNS-----------SVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385 + +R + D ++ Y+LMP+R+ Sbjct: 348 NPEPDGSGQRRAAIRPAVLRPSNGDEPAADESGAYTASASEFSYLLMPVRL 398 >gi|315659994|ref|ZP_07912852.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus lugdunensis M23590] gi|315494895|gb|EFU83232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus lugdunensis M23590] Length = 377 Score = 313 bits (802), Expect = 3e-83, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLPGNEVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S + + + +++++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DNSENKNVIIPGKALSELNKIMSDSEEDIDIFFAQNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 ++ + RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +D + ++ +P++G E +N + I FN KY+++ + I +DEV Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAID-----NDEVEIEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKADDSVTQ---------LILPIR 375 >gi|28376976|ref|NP_783868.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum WCFS1] gi|254555171|ref|YP_003061588.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum JDM1] gi|300769107|ref|ZP_07078996.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308179193|ref|YP_003923321.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum subsp. plantarum ST-III] gi|28269807|emb|CAD62704.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum WCFS1] gi|254044098|gb|ACT60891.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum JDM1] gi|300493347|gb|EFK28526.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus plantarum subsp. plantarum ATCC 14917] gi|308044684|gb|ADN97227.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus plantarum subsp. plantarum ST-III] Length = 379 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 181/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS ++ L + R I K TIP+ + L N + + S +I I IPAS Sbjct: 1 MKFTINRSAFIKELNNVQRAISSKTTIPILTGLKLDVNTDAITLTGSDADISIETTIPAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ GSI + A +IV+KL + + G + I+ G ++F + Sbjct: 61 DDNNTLVVEDAGSIVLPARFFSEIVKKLPEDTMTVNVVD---GFQTQITSGAASFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + + LA VLK L+ +T A++ +E R L G+ F + + + A Sbjct: 118 DPENYPHLPEIDTTNTITLAGDVLKELIGQTVIAVSNQESRPILTGVHFILA--NGEFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + +I+P K++ E+ R++ + V++ LSE+++ + Sbjct: 176 VATDSHRLSQRRIKLPEANNANYDVIIPGKSLTELSRMIGDNNPDVQMRLSENQVLFVLG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL-- 290 + S RL++G +P+ +IP ++ + ++ L A++R S++S R V+ S+ Sbjct: 236 NTSFYSRLLEGNYPDTSRLIPKESNTTVEISAPALSAAIERASLLSHESRNNVVRFSVNP 295 Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + + ++PD+G+ E + + ++I FN Y+ E + + + Sbjct: 296 TDKTITIFGNSPDVGEVTEQLQPTDLSGDELEISFNPDYMKEALRSFGQA-----MIKIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + ++ N ++ P+R Sbjct: 351 FTMALRPFTLVPTEE--------GENFIQLITPVR 377 >gi|59800475|ref|YP_207187.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA 1090] gi|59717370|gb|AAW88775.1| putative DNA polymerase III, beta subunit [Neisseria gonorrhoeae FA 1090] Length = 367 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER +T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAFTGIVERLHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I A + + +I+PRK V E+ ++L++ D +++ L + ++ ++ ++ Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP++ VIP NDK ++ L A++RVSI+++ + + +L L L + N Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL++++ NI S D++ +N S Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MPMRI Sbjct: 353 P---------NNPNFKYIVMPMRI 367 >gi|253681213|ref|ZP_04862011.1| DNA polymerase III, beta subunit [Clostridium botulinum D str. 1873] gi|253562451|gb|EES91902.1| DNA polymerase III, beta subunit [Clostridium botulinum D str. 1873] Length = 367 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 185/386 (47%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ + E + A + + K+ +P+ + + A + L + S ++ I I A Sbjct: 1 MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHISAKNNELTLIGSDIDLSIETKIDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI V + + +I+RKL + EN + I S F L EFP+ Sbjct: 61 VKEEGSIVVDSRIFGEIIRKLPNSLININTTEN---NSIEIICEKSKFDLIHMDSDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + VLKN+++ T FA+A +E R L GI F + ++ K+ VA DG+R Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDK--KVNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ I + S ++P K E+ +ILS + +V ++ + + I N+ + R Sbjct: 176 LALKSNMIHNE--NTISAVIPGKTFSEVSKILSDDEKNVNITFTPNHILFNLGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP ++ L ++R S+M VK + +D L +T Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVNAKRAELLNCIERASLMGKEGNTNLVKFDIKNDNLIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G+ E +N+ ++I FN KYL++++ + DDE++ DSS S I Sbjct: 294 -NSQLGRVREELNIILQGDELEIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ ++ Y+++P+R+ Sbjct: 348 KSKENNT---------YTYLVLPVRL 364 >gi|184199648|ref|YP_001853855.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201] gi|183579878|dbj|BAG28349.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201] Length = 374 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +VER + E + R + + +PV +L++A +G L I + EI I A Sbjct: 1 MKFSVERDVLAEAVTWTARSLSPRPPVPVLSGLLIKAENGSLSIASFDYEISARLTISAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ VS LL DI R L + G +V ++ S F L + P ++P Sbjct: 61 VVEEGTTLVSGRLLADICRSLPSAP----VQLEAEGGKVTLTCRSSKFNLAAMPVDDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S +A + V + + A + ++ L GI I E K+ +ATD +R Sbjct: 117 LPGLPE-LSGVVAGDEFAHAVAQVNIAASKDDTLPILTGIRMEIEGE--KMTLLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 LA+ E+ + + ++ K + +I + L SS D ++ ++ + + + Sbjct: 174 LAMRELTWRPTDPTISTAALIKAKTLNDIAKTLGSSGDVNMALAPNTELVGFESGGRRTT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LIDGE+P +++ P + V + L +AV RVS+++ R V+L+ S ++ + Sbjct: 234 SLLIDGEYPKIRSLFPENTPITAVVRTSELVEAVRRVSLVA-ERNTPVRLAFSDGQVALD 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + +A E ++ N + + FN YL E + S V F + Sbjct: 293 AGTGEDAQASEVLDAQLNGDEITVAFNPTYLSEGLHAFDS-----PFVRFSFTAPPKPAV 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +++ + ++ V Y+LMP+R+ Sbjct: 348 LSAQEE---LDGEDTVEYKYLLMPVRL 371 >gi|237793322|ref|YP_002860874.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] gi|229263029|gb|ACQ54062.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 367 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A L +I+RKL + E+ + I +S F L EFP+ Sbjct: 61 ILQEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + + LKN+++ T FA A +E R L G+ F I ++ L L VA DG+R Sbjct: 118 PPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + ++P K + E+ +IL + +V ++ + + I +I + R Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF +Y+++IP + ++ L +++R S+M+ VK S+DK+ +T Sbjct: 234 LLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E + V + I FN KYLL+++ + DDEVV SS S I Sbjct: 294 -NSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + N Y+++P+R+ Sbjct: 348 KNTELN---------NCTYLVLPVRL 364 >gi|56417078|ref|YP_154152.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries] gi|222475444|ref|YP_002563861.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Florida] gi|255003430|ref|ZP_05278394.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Puerto Rico] gi|255004549|ref|ZP_05279350.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Virginia] gi|56388310|gb|AAV86897.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries] gi|222419582|gb|ACM49605.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str. Florida] Length = 379 Score = 313 bits (802), Expect = 4e-83, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 214/385 (55%), Gaps = 23/385 (5%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 ++ R D+L+ L + +IER+N+I V V ++A DG++E+ ++ +I I + ASV Sbjct: 15 SISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNASVVH 74 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G + SA LLYDIVRKL + F + + + G++ F+L +FP+ + Sbjct: 75 KGVVVASAQLLYDIVRKLSGDCAVGFKMSD---GRLLVECGNAKFFLHVVAPEKFPAIEG 131 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E F++ S + L+ +T F+M+ EE RY L G++ H+ E+ LC VATDGHRL++ Sbjct: 132 GEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGHRLSL 189 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMSVR 240 A+V+ + +IVPRK V E+L+I+ + V VS+S+ +I + M + Sbjct: 190 AKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSK 249 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG FP+Y ++IP + ++ +L AVDRVS++ +++A+KLS +S +L ++ Sbjct: 250 VVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLTLSSA 309 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + D G A E + V Y + I N +YL+E++ + EVVF+ N++V I+ Sbjct: 310 SSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGAC----EVVFQ--DGNTAVLIQ 363 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 K+ + +++MPMRI Sbjct: 364 DKEP---------GGSMHIIMPMRI 379 >gi|229176166|ref|ZP_04303658.1| DNA polymerase III subunit beta [Bacillus cereus MM3] gi|228607325|gb|EEK64655.1| DNA polymerase III subunit beta [Bacillus cereus MM3] Length = 379 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 190/396 (47%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DNGKEIVEVAQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IISGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + S+++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|229170194|ref|ZP_04297880.1| DNA polymerase III subunit beta [Bacillus cereus AH621] gi|228613295|gb|EEK70434.1| DNA polymerase III subunit beta [Bacillus cereus AH621] Length = 381 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIKQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ + P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + DS +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379 >gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames] gi|47525256|ref|YP_016605.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49183041|ref|YP_026293.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] gi|65317470|ref|ZP_00390429.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bacillus anthracis str. A2012] gi|167635102|ref|ZP_02393419.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|167641746|ref|ZP_02399989.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|170689459|ref|ZP_02880649.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|170707580|ref|ZP_02898033.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|177655289|ref|ZP_02936843.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190569279|ref|ZP_03022173.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227812680|ref|YP_002812689.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229601421|ref|YP_002864659.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] gi|254687069|ref|ZP_05150927.1| DNA polymerase III subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254735165|ref|ZP_05192875.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254742126|ref|ZP_05199813.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B] gi|254761356|ref|ZP_05213378.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia 94] gi|30253518|gb|AAP24060.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames] gi|47500404|gb|AAT29080.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49176968|gb|AAT52344.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne] gi|167510300|gb|EDR85703.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|167529576|gb|EDR92326.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|170127576|gb|EDS96450.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|170666561|gb|EDT17334.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|172080216|gb|EDT65308.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190559586|gb|EDV13577.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227005199|gb|ACP14942.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229265829|gb|ACQ47466.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] Length = 379 Score = 312 bits (801), Expect = 4e-83, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|229542314|ref|ZP_04431374.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1] gi|229326734|gb|EEN92409.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1] Length = 381 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 92/398 (23%), Positives = 179/398 (44%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++ R+ ++E + + I + TIP+ + + A++ + S +I I +P Sbjct: 1 MKFSILRNRLIESVQDVSKAITSRTTIPILTGIKITASEEGITFTGSDSDISIESFVPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A + G I + A + ++V+KL E + I G SNF L Sbjct: 61 EDGDEIAVIQQTGGIVLQAKIFGELVKKLPMDIV---EIEVANQFQTIIRSGKSNFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + + + +LKNL+ +T FA++T E R L G+ + I +L Sbjct: 118 LDAEEYPHLPQITEDKVIRIPADILKNLIRQTVFAVSTAETRPILTGVNWSIKGS--RLN 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +ATD HRLA +I +I++P K++ E+ +IL + V + ++++++ Sbjct: 176 CIATDSHRLAQRTAEIEMAADAEYNIVIPGKSLNELNKILPDSNEPVGIVITDNQVLFKA 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKL-- 288 + L RL++G +P+ +IP E+ VN QA+DR S+++ VKL Sbjct: 236 KHLLFFSRLLEGNYPDTSRLIPTDGKTEIVVNTKEFLQAIDRASLLAKEGQNANVVKLSS 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + + +T ++P++GK + +N + I F+ KY+++ + + E+ Sbjct: 296 VTDIPGTIEITSNSPEIGKVTDRVNCKSIEGEELKISFSSKYMMDALRALEGT-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 R + IR + D+ +++P+R Sbjct: 351 TIRFTGAMRPFIIRPVNDDT---------TLQLILPVR 379 >gi|16802050|ref|NP_463535.1| DNA polymerase III subunit beta [Listeria monocytogenes EGD-e] gi|46906226|ref|YP_012615.1| DNA polymerase III subunit beta [Listeria monocytogenes serotype 4b str. F2365] gi|47093012|ref|ZP_00230791.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b H7858] gi|224498305|ref|ZP_03666654.1| DNA polymerase III subunit beta [Listeria monocytogenes Finland 1988] gi|224503075|ref|ZP_03671382.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL R2-561] gi|226222641|ref|YP_002756748.1| DNA polymerase III, beta chain [Listeria monocytogenes Clip81459] gi|254824778|ref|ZP_05229779.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|254827426|ref|ZP_05232113.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165] gi|254830706|ref|ZP_05235361.1| DNA polymerase III subunit beta [Listeria monocytogenes 10403S] gi|254899684|ref|ZP_05259608.1| DNA polymerase III subunit beta [Listeria monocytogenes J0161] gi|254913113|ref|ZP_05263125.1| DNA polymerase III [Listeria monocytogenes J2818] gi|254930867|ref|ZP_05264226.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|254937494|ref|ZP_05269191.1| DNA polymerase subunit III [Listeria monocytogenes F6900] gi|254991924|ref|ZP_05274114.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-064] gi|255026749|ref|ZP_05298735.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-003] gi|284803264|ref|YP_003415129.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578] gi|284996405|ref|YP_003418173.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923] gi|300763384|ref|ZP_07073382.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL N1-017] gi|16409361|emb|CAC98217.1| DNA polymerase III, beta chain [Listeria monocytogenes EGD-e] gi|46879490|gb|AAT02792.1| DNA polymerase III, beta subunit [Listeria monocytogenes serotype 4b str. F2365] gi|47018580|gb|EAL09334.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b H7858] gi|225875103|emb|CAS03791.1| DNA polymerase III, beta chain [Listeria monocytogenes serotype 4b str. CLIP 80459] gi|258599804|gb|EEW13129.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165] gi|258610096|gb|EEW22704.1| DNA polymerase subunit III [Listeria monocytogenes F6900] gi|284058826|gb|ADB69767.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578] gi|284061872|gb|ADB72811.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923] gi|293582412|gb|EFF94444.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262] gi|293591115|gb|EFF99449.1| DNA polymerase III [Listeria monocytogenes J2818] gi|293594017|gb|EFG01778.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194] gi|300515661|gb|EFK42710.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL N1-017] gi|328468323|gb|EGF39329.1| DNA polymerase III subunit beta [Listeria monocytogenes 1816] gi|328476146|gb|EGF46852.1| DNA polymerase III subunit beta [Listeria monocytogenes 220] gi|332310335|gb|EGJ23430.1| DNA polymerase III subunit beta [Listeria monocytogenes str. Scott A] Length = 381 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379 >gi|255520068|ref|ZP_05387305.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-175] Length = 381 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTXFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379 >gi|269958514|ref|YP_003328301.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel] gi|269848343|gb|ACZ48987.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel] Length = 379 Score = 312 bits (801), Expect = 5e-83, Method: Composition-based stats. Identities = 124/385 (32%), Positives = 214/385 (55%), Gaps = 23/385 (5%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 ++ R D+L+ L + +IER+N+I V V ++A DG++E+ ++ +I I + ASV Sbjct: 15 SISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNASVVH 74 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 G + SA LLYDIVRKL + F + + + G++ F+L +FP+ + Sbjct: 75 KGVVVASAQLLYDIVRKLSGDCAVGFKMSD---GRLLVECGNAKFFLHVVAPEKFPAIEG 131 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E F++ S + L+ +T F+M+ EE RY L G++ H+ E+ LC VATDGHRL++ Sbjct: 132 GEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGHRLSL 189 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMSVR 240 A+V+ + +IVPRK V E+L+I+ + V VS+S+ +I + M + Sbjct: 190 AKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSK 249 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG FP+Y ++IP + ++ +L AVDRVS++ +++A+KLS +S +L ++ Sbjct: 250 VVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLTLSSA 309 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + D G A E + V Y + I N +YL+E++ + EVVF+ N++V I+ Sbjct: 310 SSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGAC----EVVFQ--DGNTAVLIQ 363 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 K+ + +++MPMRI Sbjct: 364 DKEP---------GGSMHIIMPMRI 379 >gi|9845532|gb|AAG00841.1| DnaN [Mycobacterium tuberculosis] Length = 402 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R + + + + + +PV VLL +D L I E+ + A + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G++ VS LL DI R L + + G V ++ G++ F L + P ++P+ Sbjct: 75 SPGTVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + + + + A ++ L GI I E + L ATD RLA Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187 Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234 V E+ A + +++VP K + E + S V++SL + + ++ Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ + Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D+G+A E + V Y P+ I FN YL + + ++ S + V F ++ Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360 Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400 Score = 43.7 bits (102), Expect = 0.053, Method: Composition-based stats. Identities = 27/182 (14%), Positives = 68/182 (37%), Gaps = 16/182 (8%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F L + V + L+G+ ++ L + D A A+ Sbjct: 11 TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244 V A+I +++V + + +I R L +K V V +R+ L + S+ + Sbjct: 69 V--GAEIVSPGTVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 ++P +P ++ + +A+ +V+I + +++ + + + + Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180 Query: 300 DN 301 + Sbjct: 181 TD 182 >gi|70725003|ref|YP_251917.1| DNA polymerase III subunit beta [Staphylococcus haemolyticus JCSC1435] gi|68445727|dbj|BAE03311.1| DNA polymerase III beta chain, sliding clamp subunit [Staphylococcus haemolyticus JCSC1435] Length = 377 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKLE-DDSENKNVIIPGKALSELNKIMSDSDEEIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +D + ++ +P++G E + + I FN +Y+++ + I +DEV Sbjct: 296 NDVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSRYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K+ DS +++P+R Sbjct: 351 FGTMKPFILKPKEDDSVTQ---------LILPIR 375 >gi|327475229|gb|AEA77209.1| DNA polymerase III beta subunit [Exiguobacterium sp. EPVM] Length = 379 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 186/396 (46%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T++R ++ + + + + TIP+ + L+A+ L + S EI I IP Sbjct: 1 MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ ++A L +IV+KL N + I G + F+L Sbjct: 61 EGGIELIQIQRAGSVVLNARFLGEIVKKLPTNEVTLEVSPNFM---TRIESGQAEFHLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E F L + +LK ++ +T FA++ +E R L G+ F + E L Sbjct: 118 LDPDEYPRLPELSSERRFYLPADLLKTIIRQTSFAVSAQETRPVLTGVNF--SAEKGFLT 175 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA+ +++VP +++ E+ ++L ++ V++ L++ +I Sbjct: 176 CVATDSHRLALRRARFETDNDLTFQNVVVPGRSLNELAKLLDREELPVEIVLTDQQILFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 ++++S RL+DG +P+ +IP +R+N + QA+DR S+++ + R +K Sbjct: 236 MKNISFFSRLLDGAYPDTSRLIPEEYRTAVRLNAKDFLQAIDRASLLARADRNNVIKFVA 295 Query: 291 SS-DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + ++ +P++GK E +++ + I FN K++++ + + + E+ Sbjct: 296 EEATTVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALDAS-----EIEI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S +R ++DS +++P+R Sbjct: 351 QFTGSMRPFILRPVEQDSV---------LQLILPVR 377 >gi|303256369|ref|ZP_07342383.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47] gi|331001505|ref|ZP_08325123.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis YIT 11859] gi|302859860|gb|EFL82937.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47] gi|329568234|gb|EGG50051.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis YIT 11859] Length = 391 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 20/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASV 61 I ++ +I + + +++RK +PV ++L + + A+ +++I Sbjct: 27 INSKKENIFKPIQAVSGVVQRKQPLPVLSNILFVQKGKQVTLVANDLDLQILTVAEIGEE 86 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + S T+SA L DI+ L D +SF K G V +S G S F LQ+ EFP Sbjct: 87 NSEMSTTISARKLTDILATLPDTNPLSFSK---KGDHVVLSSGKSKFELQTISAEEFPVI 143 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + ++F ++ K L+ FA A +RY+LNG++ I E+ K+ VATDGHRL Sbjct: 144 TEVDLEHAFTMSCLRFKYLLNMVSFACAVNNVRYFLNGVY--ICAENNKVRGVATDGHRL 201 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A+ +V+ K I+PRK V E++R++ ++V +SE +I + + +L Sbjct: 202 ALCDVEAEKTADKKLDAILPRKTVKELVRLIPDSQDPIEVYISERQIKFKFVGIEILSKL 261 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 ++G +P+YQ VIP N+KE RV L ++ RV+ +++ ++ V+ +L+ L + +N Sbjct: 262 VEGRYPDYQRVIPEHNEKEFRVGRQELLSSLQRVATLTADKLMGVRWNLTPGHLNVAANN 321 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 DM +A + ++V Y+ P++I FN YL+E+++ + +D V L + IR Sbjct: 322 ADMEEAEDEISVEYSGSPIEIGFNVAYLIEVLNVLK-----NDSVRISLGEQKNPALIRM 376 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D D N +V+MPM+I Sbjct: 377 PDND---------NFKFVVMPMKI 391 >gi|187777366|ref|ZP_02993839.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC 15579] gi|187774294|gb|EDU38096.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC 15579] Length = 367 Score = 312 bits (800), Expect = 5e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A L +I+RKL + E+ + I +S F L EFP+ Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + S LKN+++ T FA A +E R L G+ F I ++ L L VA DG+R Sbjct: 118 PPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + ++P K + E+ +IL + +V ++ + + I +I + R Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF +Y+++IP + ++ + L +++R S+M+ VK S DK+ +T Sbjct: 234 LLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E + V + I FN KYLL+++ + D+EVV SS S I Sbjct: 294 -NSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + N Y+++P+R+ Sbjct: 348 KNTEIN---------NCTYLVLPVRL 364 >gi|165873018|ref|ZP_02217639.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] gi|254755964|ref|ZP_05207996.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum] gi|164711230|gb|EDR16786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] Length = 379 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFSIQKDYLVRSVQGVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA++T E R L G+ + + +L Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +ATD HRLA+ + I + + ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL + Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377 >gi|186680583|ref|YP_001863779.1| DNA polymerase III subunit beta [Nostoc punctiforme PCC 73102] gi|186463035|gb|ACC78836.1| DNA polymerase III, beta subunit [Nostoc punctiforme PCC 73102] Length = 387 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 92/401 (22%), Positives = 182/401 (45%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-------NELGTEVNISHGDSNFYLQ 111 A V G+I + A LL DI +L +G + + G V ++ ++ ++ Sbjct: 61 AEVWQGGAIALPAKLLVDITSRLPEGEITLDDESALTGATSSGEGLIVTLTPKSGHYQVR 120 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 + EFP E L ++ L + + FA + +E + L G+ + ++ L Sbjct: 121 AMGPEEFPELPVIENTEVIYLTTAALVEGLRGSLFATSGDETKQVLTGVHLTVKQD--TL 178 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILS---SKDSSVKVSLSES 226 ATDGHRLAV E + + VP +A+ E+ R+L+ S D V + + Sbjct: 179 EFAATDGHRLAVVETSNERPLGGTSQLEVTVPARALRELQRMLAHSASSDEPVALYFDQG 238 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + V Sbjct: 239 QVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFVSTLERIAVLADQKNNIV 298 Query: 287 KLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 KLS+ S ++ ++ + D+G ESM + ++I FN KYL+E + + S Sbjct: 299 KLSIDSKAQEITLSCEAQDVGSGRESMPAQISGENIEIAFNIKYLMEGLKELPSS----- 353 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ L+ S + V + Y+ MP+++ Sbjct: 354 EIQMHLNQSLTPVIFTP---------LGGLKMTYLAMPVQL 385 >gi|153939951|ref|YP_001389371.1| DNA polymerase III subunit beta [Clostridium botulinum F str. Langeland] gi|168181117|ref|ZP_02615781.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916] gi|170757193|ref|YP_001779628.1| DNA polymerase III subunit beta [Clostridium botulinum B1 str. Okra] gi|226947224|ref|YP_002802315.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str. Kyoto] gi|152935847|gb|ABS41345.1| DNA polymerase III, beta subunit [Clostridium botulinum F str. Langeland] gi|169122405|gb|ACA46241.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str. Okra] gi|182668123|gb|EDT80102.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916] gi|226843050|gb|ACO85716.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str. Kyoto] gi|295317478|gb|ADF97855.1| DNA polymerase III, beta subunit [Clostridium botulinum F str. 230613] gi|322804280|emb|CBZ01830.1| DNA polymerase III beta subunit [Clostridium botulinum H04402 065] Length = 367 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A L +I+RKL + E+ + I +S F L EFP+ Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + S LKN+++ T FA A +E R L G+ F I ++ L L VA DG+R Sbjct: 118 PPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + ++P K + E+ +IL + +V ++ + + I +I + R Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF +Y+++IP + ++ + L +++R S+M+ VK S DK+ +T Sbjct: 234 LLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E + V + I FN KYLL+++ + D+EVV SS S I Sbjct: 294 -NSQLGMVREELKVVLQGDDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + N Y+++P+R+ Sbjct: 348 KNTEIN---------NCTYLVLPVRL 364 >gi|315273165|ref|ZP_07869212.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120] gi|313616216|gb|EFR89294.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120] Length = 381 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLV 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I + KL Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKDN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETNIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379 >gi|325288203|ref|YP_004264384.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM 8271] gi|324963604|gb|ADY54383.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM 8271] Length = 365 Score = 312 bits (800), Expect = 6e-83, Method: Composition-based stats. Identities = 109/387 (28%), Positives = 191/387 (49%), Gaps = 26/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V ++D+L + R + KNT+P+ + L+A + L +A+ E+ I + A Sbjct: 1 MKIKVTKTDLLTGVNTVQRAVSAKNTLPILQGIKLRAENNTLCFEATDLELGIRSSFDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + + L +IVRKL D + + NI++ S+F + + EFP Sbjct: 61 IIEEGTIVLPSRLFSEIVRKLPDSDVVLESTD----HITNINYSGSSFTINGYDPEEFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +L + + KN++ +T FA A EE R G+ H+ E++L L V TD HR Sbjct: 117 IGDVPVEDEIKLPADLFKNMIRQTVFACAAEETRPVFTGLLLHLEEDNLAL--VGTDTHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA I K IVP K++ EI R+L D + + S+SR+ N S+ + R Sbjct: 175 LAYRTAKIPGNKQKFKG-IVPAKSMQEIYRLLQD-DHDLTIYCSKSRVFFNFGSIQLQAR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLCM 297 LIDG+FPNY+ VIP + +L +N N V+R S++S + +V++++ + L + Sbjct: 233 LIDGQFPNYKQVIPQKCNTKLLINTKNFTDMVERASLLSKDNLIKTGSVRINVENSVLKI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + GK E M + + + I FN KY+L+++ I S + ++ + + Sbjct: 293 NQFS-EAGKINEEMKINQDGEDVSISFNSKYVLDLLKIIDS-----ENILMETSGAVNPC 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 R + N + +++P+R Sbjct: 347 IFRPE---------NDQDYLCLVLPLR 364 >gi|299820841|ref|ZP_07052730.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM 20601] gi|299817862|gb|EFI85097.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM 20601] Length = 381 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 103/395 (26%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFIIKRDRLVQAVNEVSRAISSRTTIPILTGIKITVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + A DIVR+L D E + NI G ++F L Sbjct: 61 DNDEVIVEVESFGGIVLQARYFGDIVRRLPDENV---ELEVVSSYQTNIRSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E L +VLKN++ +T FA++ E+R L G+ + I E L Sbjct: 118 LDPLEYPKLPEVTDGKKIILPINVLKNIIRQTVFAVSAIEVRPVLTGVNWLIKENLLT-- 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + + + ++++P K++ E+ +IL S+++ ++ ++I + Sbjct: 176 AVATDSHRLALREIPLETSLEEDYNVVIPGKSLSELNKILDDASESIEMVIANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290 + L RL++G +P+ +IP EL +N + QA+DR S+++ R +KL +L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDIKSELVINSKSFLQAIDRASLLARENRNNVIKLSTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S ++ ++ ++P++G E + + ++ + I FN KY+++ + D++V Sbjct: 296 ESGQVEVSSNSPEIGNVSERVFSQQFSGEELKISFNGKYMMDALRAFEG-----DDIVIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR KD + N ++ P+R Sbjct: 351 FAGTMRPFVIRPKDATNPNEI------LQLITPVR 379 >gi|168183728|ref|ZP_02618392.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] gi|182673196|gb|EDT85157.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] Length = 367 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 190/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKAKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A L +I+RKL + E+ + I +S F L EFP+ Sbjct: 61 ILQEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + + LKN+++ T FA A +E R L G+ F I ++ L L VA DG+R Sbjct: 118 PPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + ++P K + E+ +IL + +V ++ + + I +I + R Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF +Y+++IP + ++ L +++R S+M+ VK S+DK+ +T Sbjct: 234 LLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E + V + I FN KYLL+++ + DDEVV SS S I Sbjct: 294 -NSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + N Y+++P+R+ Sbjct: 348 KNTELN---------NCTYLVLPVRL 364 >gi|229065150|ref|ZP_04200443.1| DNA polymerase III subunit beta [Bacillus cereus AH603] gi|228716179|gb|EEL67898.1| DNA polymerase III subunit beta [Bacillus cereus AH603] Length = 381 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 188/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ + P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDNSI---------IQLILPVR 379 >gi|229917454|ref|YP_002886100.1| DNA polymerase III subunit beta [Exiguobacterium sp. AT1b] gi|229468883|gb|ACQ70655.1| DNA polymerase III, beta subunit [Exiguobacterium sp. AT1b] Length = 379 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 186/396 (46%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T++R ++ + + + + TIP+ + L+A+ L + S EI I IP Sbjct: 1 MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ ++A L +IV+KL N + I G + F+L Sbjct: 61 EGGMELIQIQRAGSVVLNARFLGEIVKKLPTNEVTLEVSPNFM---TRIESGQAEFHLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E F L + +LK ++ +T FA++++E R L G+ F + E L Sbjct: 118 LDPDEYPRLPELASDRRFYLPADLLKTIIRQTSFAVSSQETRPVLTGVNF--SAEKGFLT 175 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA+ +++VP +++ E+ ++L ++ +++ L++ +I Sbjct: 176 CVATDSHRLALRRARFETDNDLTFQNVVVPGRSLNELAKLLDREELPIEIVLTDQQILFR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 ++++S RL+DG +P+ +IP +R+N QA+DR S+++ + R +K Sbjct: 236 MKNISFFSRLLDGAYPDTSRLIPEEYRTAVRMNAKEFLQAIDRASLLARADRNNVIKFVA 295 Query: 291 SSDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + ++ +P++GK E +++ + I FN K++++ + + + E+ Sbjct: 296 EDKTAVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALDAS-----EIEI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S +R ++DS +++P+R Sbjct: 351 QFTGSMRPFILRPVEQDSV---------LQLILPVR 377 >gi|294055612|ref|YP_003549270.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM 45221] gi|293614945|gb|ADE55100.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM 45221] Length = 375 Score = 312 bits (799), Expect = 7e-83, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 192/396 (48%), Gaps = 33/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L ++ ++T+P+ +VL++A DG + + + ++ I I A Sbjct: 1 MKFKINQDHFSNGLQQVLNVVATRSTMPILSNVLIEAADGHISLTTTNLDLGIRCRIKAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G IT+ L IVR+L F E + I+ G S F + EFP Sbjct: 61 IETPGGITLPVRKLATIVRELPQSEV---FVEAGDNNQAKITSGGSLFKIMGISTEEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + FEL S + N+++ + +T+E RY LNG++F+ ++ KL VATDG R Sbjct: 118 LPTFENRHVFELGQSEVVNMLKSVSYGQSTDENRYILNGVYFNFADD--KLTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232 LA+ ++ S+I+P K V E+ R+L D +K++ ++ ++ I Sbjct: 176 LALTALETEITEDNAGSLILPAKTVAELERLLGKGDK-LKIAFNDRQVAFEISIGEDSDS 234 Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + L + ++++G +PNY+ VIP + +++ + + V R ++++S + +VKL Sbjct: 235 GLADQLYLVSKIVEGNYPNYRQVIPKETEHRVKIERELMLECVHRAALVTSDKSNSVKLK 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +S + L ++ + + G++ ESM + Y+ + + FN ++L+E + + DEV F Sbjct: 295 VSKNLLEISGSSSEYGESHESMAIAYDGPEVQVAFNPQFLMEPLKAL-----TKDEVFFE 349 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + D N V+MP+R+ Sbjct: 350 FKDELSPGLFKTLD-----------NFICVIMPLRL 374 >gi|239637287|ref|ZP_04678274.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603] gi|239597124|gb|EEQ79634.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603] gi|330685256|gb|EGG96917.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis VCU121] Length = 377 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I +IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEISIPKQ 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 62 IDGEDIVDISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKLE-DTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 ++ RL++G +P+ + P + + +L +N A+DR S+++ +KLS Sbjct: 236 GHVNFISRLLEGHYPDTTRLFPENYEIKLGINNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + + I FN KY+++ + I +DEV Sbjct: 296 NEVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375 >gi|148378013|ref|YP_001252554.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC 3502] gi|153931816|ref|YP_001382412.1| DNA polymerase III subunit beta [Clostridium botulinum A str. ATCC 19397] gi|153937046|ref|YP_001385964.1| DNA polymerase III subunit beta [Clostridium botulinum A str. Hall] gi|148287497|emb|CAL81556.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC 3502] gi|152927860|gb|ABS33360.1| DNA polymerase III, beta subunit [Clostridium botulinum A str. ATCC 19397] gi|152932960|gb|ABS38459.1| DNA polymerase III, beta subunit [Clostridium botulinum A str. Hall] Length = 367 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++ +LE + + + K+T+P+ +L++AN L + S ++ I + A+ Sbjct: 1 MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I + A L +I+RKL + E+ + I +S F L EFP+ Sbjct: 61 ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPGEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + S LKN+++ T FA A +E R L G+ F I ++ L L VA DG+R Sbjct: 118 PPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + ++P K + E+ +IL + +V ++ + + I +I + R Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF +Y+++IP + ++ + L +++R S+M+ VK S DK+ +T Sbjct: 234 LLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E + V + I FN KYLL+++ + D+EVV SS S I Sbjct: 294 -NSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + N Y+++P+R+ Sbjct: 348 KNTEIN---------NCTYLVLPVRL 364 >gi|84497193|ref|ZP_00996015.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649] gi|84382081|gb|EAP97963.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649] Length = 377 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 171/391 (43%), Gaps = 24/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + +PV +L++AND G + + A E+ +PA Sbjct: 1 MKFRVEREVLAEAVTWVARGLPARPPVPVLAGILIEANDEGTVTLSAFDYEVSARLTVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ V LL DI R L + G++V + G S F L P ++P Sbjct: 61 EVSESGTVLVLGRLLADISRNLPNKP----VDVEVQGSKVQVVCGSSRFSLLQMPSDDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S + + V + A + L G+ I + K+ +ATD + Sbjct: 117 TLPSSPEP-SGSIDGQLFTQAVNQVSIAADRGDTLPILTGVRVEIEGD--KMTLLATDRY 173 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 RLA+ E+ A ++VP + + + R L + S+ V+L + + Sbjct: 174 RLAMRELTWNPTDSAASHIVLVPARTLADTARSLGAS-GSIDVALGSAAGGDGLVGFEAG 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S + RL+DGE+P ++ P +++ E VN L +AV RV++++ R V+L + Sbjct: 233 SRRTTTRLLDGEYPKVSSIFPTTSETESVVNTAELVEAVKRVALVA-ERNTPVRLRFTEG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + + +A E++ +++ FN +LL+ + + ++ Sbjct: 292 QVAIEAGTGEDAQASEAVEATLTGPDVEVAFNPGFLLDGLGAVGTEFS-----RLSFTQP 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + G+ ++ + + + YV+MP+R Sbjct: 347 SRPAVLSGQ---AEADGEADTSYRYVIMPVR 374 >gi|23193192|gb|AAN14421.1|AF319579_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 381 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 188/398 (47%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQTGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ + P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDNSI---------IQLILPVR 379 >gi|325106471|ref|YP_004276125.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145] gi|324975319|gb|ADY54303.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145] Length = 374 Score = 312 bits (799), Expect = 8e-83, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 179/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + +L+ L + +P+ + L + +G L I A+ + + ++ Sbjct: 1 MRFIVSTTTLLKHLQSVSGALSSSAVLPILENFLFEIKEGNLIISATDLQTSMITSLAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G I V + +L D ++ L + E E IS GD + L +FP Sbjct: 61 AKEGGKIAVPSKILLDTLKTLPEQPIAFSVDEQTYAIE--ISAGDGKYKLSGENGEDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L +S L + +T FA++ +E+R + G+F ++ +D+ VATD H+ Sbjct: 119 IPTVDEASTVNLPASALSEAINKTIFAVSNDELRPAMTGVFCQLSPQDITF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + S I+P+KA+ + L S+D +V V + + ++S+ R Sbjct: 177 LVRYRRK-DTKSESSTSFILPKKALNLLKSALPSEDVNVAVEYNSTSAFFKFANISLICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP +N +L ++ + + RV I ++ V+L +S +L ++ + Sbjct: 236 LIDERYPDYEAVIPQNNPNKLILDKSLFLNCLKRVVIFANKTTHQVRLKISGSELHISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E + YN M+I FN K+L+E+++NIS DEV + + N + + Sbjct: 296 DLDFANEAHERIGCQYNGEDMEIGFNAKFLIEMLNNISG-----DEVTLEMSTPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + ++MP+ + Sbjct: 351 ------FPSVTDENEDVLMLVMPVML 370 >gi|217965933|ref|YP_002351611.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23] gi|255022506|ref|ZP_05294492.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-208] gi|290892038|ref|ZP_06555035.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071] gi|217335203|gb|ACK40997.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23] gi|290558632|gb|EFD92149.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071] gi|307569525|emb|CAR82704.1| DNA polymerase III, beta subunit [Listeria monocytogenes L99] Length = 381 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 102/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379 >gi|75906227|ref|YP_320523.1| DNA polymerase III subunit beta [Anabaena variabilis ATCC 29413] gi|75699952|gb|ABA19628.1| DNA polymerase III, beta subunit [Anabaena variabilis ATCC 29413] Length = 387 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 184/401 (45%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT------EVNISHGDSNFYLQS 112 A V G+I + A LL DI +L +G + GT V+++ + L++ Sbjct: 61 ADVWQSGAIALPAKLLVDITSRLPEGEITLDDESATDGTATGEGLIVSLTPKTGKYQLRA 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + L ++ L + + FA + +E + L G+ + ++ L Sbjct: 121 MGAEEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQD--TLE 178 Query: 173 AVATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLAV E + + VP +A+ E+ R+L+ + + + L + Sbjct: 179 FAATDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQG 238 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + V Sbjct: 239 QVIFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNIV 298 Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 KL++ ++ +L ++ + +MG ESMN ++I FN KYL+E + + S Sbjct: 299 KLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPS-----P 353 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ ++ + + V + Y+ MP+++ Sbjct: 354 EIQMHINQNLTPVIFTP---------LGGLKMTYLAMPVQL 385 >gi|224477955|ref|YP_002635561.1| DNA polymerase III subunit beta [Staphylococcus carnosus subsp. carnosus TM300] gi|222422562|emb|CAL29376.1| DNA polymerase III beta subunit [Staphylococcus carnosus subsp. carnosus TM300] Length = 378 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R + L + I + T+P+ + + A + + + S EI I +IP Sbjct: 2 MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKEDEVILTGSDSEISIEISIPKQ 61 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL + I+ G S F L Sbjct: 62 VDGEDIVTISETGSVVLPGRFFVDIIKKLPGKDVKLST---NAQFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPQVSQDDAIQLPIKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKLEDEDIDNKNVIIPGKALAELNKIVSDSEDDINIFFASNQVLFKV 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 ++ RL++G +P+ + P + + ++ ++ ++ A+DR S+++ +KLS Sbjct: 237 GHINFISRLLEGHYPDTSRLFPENYETKIEMSNSDFYHAIDRASLLAREGGNNVIKLSTG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++++ ++ +P++G E +N + I FN KY+++ + I S DEV Sbjct: 297 NEEVELSSTSPEIGTVKEDVNANDVEGSNLKISFNSKYMMDALKAIDS-----DEVEVEF 351 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K+ DS +++P+R Sbjct: 352 FGTMKPFTLKPKEDDSVVQ---------LILPIR 376 >gi|262371172|ref|ZP_06064493.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] gi|262313902|gb|EEY94948.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046] Length = 382 Score = 311 bits (798), Expect = 9e-83, Method: Composition-based stats. Identities = 118/400 (29%), Positives = 204/400 (51%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + +L +L H +ER++T+ + +V +Q L I S E+E+ + P + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKVQVTQASLTITGSDLEVELVASTPLT 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 G TV A L DI + L A I + + G+S F L + P + Sbjct: 61 EGACLQAGETTVPARKLMDICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E + LK L E+T FAMA +++R+YL G I+ L+ AV T Sbjct: 119 YPLLTTENTQGTQVAVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDNNQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIES 234 DGHRLA+ E + ++ IVPRKAVGE+ R+LS +D + + + + ++I S Sbjct: 177 DGHRLALCETVASSNATQLIQAIVPRKAVGELQRLLSIEDEQLALLIGRELLNVTISIAS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RVSI+S+ +++ Sbjct: 237 RDKEQGDTMVRFTTKLIDGKFPDYRRVIPRGGDKNVLIAHDVFKQSLQRVSILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ ++D L + +NP+ +A+E + + YN PM++ FN +Y+LE++ + D+ Sbjct: 297 VFLNFAADTLQLRANNPEQDEAVEDLAIQYNNAPMEMSFNAQYILEVLGALDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VSMTMTEANQSVLVQDP---------AHQDQTYVVMPMRV 382 >gi|271961611|ref|YP_003335807.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270504786|gb|ACZ83064.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 379 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 173/393 (44%), Gaps = 24/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M +ER + E + R + + ++PV + L+ + G L++ E+ + Sbjct: 1 MMFRIERDVLAEAVAWTARSLPARPSVPVLAGMRLEVTEKGQLKLSGFDYEVSAEVTLEP 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G + VS LL +I R L + F E G + ++ G + F L + P ++P Sbjct: 61 QSGEAGVVLVSGRLLAEITRALP-AQPVDFVVE---GAKAVVTCGSARFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + V + V + A ++ L G+ I + + L ATD + Sbjct: 117 SLPTMPPAAGRVGS-DVFASAVGQVAVAAGKDDTLPMLTGVRMEIEGDTVTL--AATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNI 232 RLAV E+ +I ++P K + + + L S + V+V++S E I + Sbjct: 174 RLAVRELKWQPGQPDFSAIAMIPGKTLADAAKALGSTGAEVEVAMSSVGGTGEGMIGFSS 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+D EFP Y++++P ++ + +AV RV++++ R V+L+ Sbjct: 234 AGRRTTTRLLDPEFPKYRSLLPTEFSARADLSTSAFVEAVKRVALVA-ERNTPVRLAFRG 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D++ + + D +A+E + V + ++I FN+++LLE + I SD ++ + Sbjct: 293 DEVVLEAGSGDEAQAVEVLPVDFEGDDINIAFNHQFLLEGLGAIDSDV-----ARLQMTT 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + G + + Y++MP+R+ Sbjct: 348 STKPAILTG---GKHVDDGGVPDYRYLIMPIRL 377 >gi|16329463|ref|NP_440191.1| DNA polymerase III subunit beta [Synechocystis sp. PCC 6803] gi|2494196|sp|P72856|DPO3B_SYNY3 RecName: Full=DNA polymerase III subunit beta gi|1651945|dbj|BAA16871.1| DNA polymerase III beta subunit [Synechocystis sp. PCC 6803] Length = 391 Score = 311 bits (798), Expect = 1e-82, Method: Composition-based stats. Identities = 99/405 (24%), Positives = 181/405 (44%), Gaps = 36/405 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLL+A+ L + A + I + Sbjct: 1 MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQ---ISFFKENELGTEVNISHGDSNFYLQSFPE 115 A V G IT+ A LL DIV +L DG I + I+ F ++ Sbjct: 61 ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLDA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +FP+ E V L + L + FA +T+E + L G+ HI L A Sbjct: 121 DDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGV--HIKGSGDSLEFAA 178 Query: 176 TDGHRLAVAEVDIVAQIAKMPSII-----------VPRKAVGEILRILSSKDSS--VKVS 222 TDGHRLAV E + + ++I +P +A+ E+ R+++S+ +S V + Sbjct: 179 TDGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLV 238 Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 ++++++ + ++ R ++G +P Y +IP + + + L +++RVS+++ + Sbjct: 239 VNDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQK 298 Query: 283 IQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V +L ++L + V+ D+G ESM I FN KYL++ + + S++ Sbjct: 299 NNLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPSND 358 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +L+ N V + Y++MP+R+ Sbjct: 359 -----IQMQLNEGNQPVIFTP---------LGGLKMTYLVMPVRL 389 >gi|42520873|ref|NP_966788.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] gi|42410613|gb|AAS14722.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila melanogaster] Length = 365 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 217/384 (56%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N I V + ++A G +++ A+ +I + ++ A+ Sbjct: 1 MRFSVSRTSLLNTLSRVSGVVERRNAIDVFACINIKAQHGSIKLMATDLDISMFASLAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ Sbjct: 61 VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 119 LEEDNYKHDFTLLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L+IL + +KV LS+ +I + + Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKFTCGEYILISK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FPNY+ VIP S DK + + L +DRVS++ S +++++K SL L + + Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A ES+ V YNE P++I FN +YLL+++ I ++ F L NS+ I Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGNSATIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D S A YV+MPMR Sbjct: 350 DEDDSS---------ALYVVMPMR 364 >gi|297558987|ref|YP_003677961.1| DNA polymerase III subunit beta [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296843435|gb|ADH65455.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 379 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 177/394 (44%), Gaps = 28/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGA 56 MK VER + E + R + + ++PV +LL+A + L + E+ A Sbjct: 1 MKFRVERDVLAEAVAWTARTLPTRPSVPVLVGILLEAGEFDGLQQLRLSGFDYEVSTQAA 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + V+ G++ V+ LL +I R L + + G +V ++ G + F L + P Sbjct: 61 VDVEVEEPGTVLVTGKLLAEITRNLPAQP----VEISTDGAKVVVTGGSAKFTLTTMPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ E V S + S V + A ++ L G+ I E + L +T Sbjct: 117 DYPTLPEMPGV-SGTVGSDAFAAAVSQVAVAAGRDDTLPMLTGVRVEIEGETITL--AST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSES-----RIHL 230 D +RLAV E + + ++ +VP K + + + L+S + V ++LS+ I Sbjct: 174 DRYRLAVREFTWKPENPDLSAVALVPAKTLHDTAKSLTSG-AEVSIALSDGGSGEGMIGF 232 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + RL+DGEFP Y+ ++P + + V+ + +AV RVS+++ R ++LS Sbjct: 233 EGGGRRTTTRLLDGEFPKYRALLPDTFNSVAEVSRSEFVEAVKRVSLVA-ERNTPLRLSF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S +L + + +A+E + + + I FN +LL+ + I +D Sbjct: 292 SQGQLVLEAGTGEEAQAVEVLEADLDGDDIQIAFNSGFLLDGLGAIGTDV-----ARLHF 346 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S + GK + ++ + Y++MP+R Sbjct: 347 TTSTKPSILTGKPAEEGSSPE----YRYLIMPVR 376 >gi|17229502|ref|NP_486050.1| DNA polymerase III subunit beta [Nostoc sp. PCC 7120] gi|17131100|dbj|BAB73709.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120] Length = 387 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 184/401 (45%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT------EVNISHGDSNFYLQS 112 A V G+I + A LL DI +L +G + GT V+++ + L++ Sbjct: 61 ADVWQSGAIALPAKLLVDITSRLPEGEITLDDESATDGTATGEGLIVSLTPKTGKYQLRA 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + L ++ L + + FA + +E + L G+ + ++ L Sbjct: 121 MGAGEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQD--TLE 178 Query: 173 AVATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLAV E + + VP +A+ E+ R+L+ + + + L + Sbjct: 179 FAATDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQG 238 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + V Sbjct: 239 QVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNIV 298 Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 KL++ ++ +L ++ + +MG ESMN ++I FN KYL+E + + S Sbjct: 299 KLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPS-----P 353 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ ++ + + V + Y+ MP+++ Sbjct: 354 EIQMHINQNLTPVIFTP---------LGGLKMTYLAMPVQL 385 >gi|254851840|ref|ZP_05241188.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503] gi|258605132|gb|EEW17740.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503] Length = 381 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIIEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379 >gi|229014657|ref|ZP_04171771.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048] gi|228746668|gb|EEL96557.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048] Length = 381 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 187/398 (46%), Gaps = 33/398 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIKQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P + E + F++ + +LK+++ +T FA+++ E R L G+ + + +L Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175 Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 +ATD HRLA+ + I ++++P K++ E+ +IL + V + ++E ++ Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288 + L RL++G +P+ +IP + ++ VN QA+DR S+++ R VKL Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295 Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L L ++ + P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR + +S +++P+R Sbjct: 351 KVSFTGAMRPFLIRTVNDNSI---------IQLILPVR 379 >gi|154496127|ref|ZP_02034823.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC 29799] gi|150274682|gb|EDN01746.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC 29799] Length = 370 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 175/387 (45%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E++ + + + R + K++IP +LL+A L + E I +PA Sbjct: 1 MKFTCEKALLQSAISTSSRAVSPKSSIPALEGILLEA-GSELRLTGYNLETGIRTVVPAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ +SA L +I+RKL D I + VNI G S F + EFP Sbjct: 60 IQAKGSLVLSARLFGEIIRKLPDDTVIFTAE----NYMVNIKCGMSEFNILGTDPEEFPE 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 EY SF + LK ++ +T FA++ E R G F ++E L + V+ DG+R Sbjct: 116 LPTVEYQNSFVITQERLKAMIGQTLFAVSDNESRPIHTGSLFEVDENGLTV--VSVDGYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ I + + S +VP A+ E+ +I S D V+ + + + Sbjct: 174 LALRHEPIDKKEGEASFSFVVPGAALSEVEKICSQVDEPASVTQGARHVMFKVGDTMLVA 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 R ++GEF Y+ +P +N + + L ++DRVS++ S +++ ++ + L ++ Sbjct: 234 RRLEGEFLAYRQAVPRNNPIHIEGDTRALLSSIDRVSLIISDKLKSPLRCIFEENLLKIS 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +G A + V + ++I FN KYL++ + + D V L + S Sbjct: 294 TKTA-IGDARDECPVSGDGKGLEIGFNNKYLMDALKAAPA-----DRVRLELSTGVSPCV 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D N Y+++P+R+ Sbjct: 348 ILPDD--------GGDNFLYMVLPVRL 366 >gi|72160490|ref|YP_288147.1| DNA polymerase III subunit beta [Thermobifida fusca YX] gi|71914222|gb|AAZ54124.1| DNA polymerase III beta subunit family protein [Thermobifida fusca YX] Length = 379 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 171/395 (43%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND---GLLEIKASGPEIEITGAI 57 MK V+R + + R + + +PV + L+ D L + E+ ++ Sbjct: 1 MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQASV 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS+ V LL +IVR L + G+ ++ G++ F L + P + Sbjct: 61 DVHAEEAGSVLVPGRLLAEIVRTLPPHPVEFHVE----GSRALLTCGNARFTLLTLPLED 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P+ + V V + + + ++ L G+ + + ATD Sbjct: 117 YPTLPAMPRTIG-SAPADVFATAVRQVLPSTSRDDTLPMLTGVHLTFRGD--TILLAATD 173 Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR------IHL 230 +R+AV E+ + + S +VP + +G+ R L+ + + +S S+SR I Sbjct: 174 RYRIAVREMWWKPEEVDIDTSALVPARTLGDFSRSLTGGNVDIALSTSDSRGAGEGMIGF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RLID +F +Y++ P + V L +AV RV++++ R V+LS Sbjct: 234 EHDGKRTTTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVA-DRSTPVRLSF 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +S ++ + + D +A+E++ V + PM I FN +Y L+ + N+ + + R Sbjct: 293 TSSEVVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVET-----ERAFLRF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G + + K + Y++MP+R+ Sbjct: 348 VAPTRPAVITG----TPAKEGGKPDFRYLVMPLRL 378 >gi|254478910|ref|ZP_05092272.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM 12653] gi|214035132|gb|EEB75844.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM 12653] Length = 385 Score = 311 bits (797), Expect = 1e-82, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 190/389 (48%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ +LE + A R + + T+P+ + + A ++++ + EI I IPA Sbjct: 16 MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 75 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V A + D+V+KL +G +++ VN+ GD NF + EFP Sbjct: 76 IEEEGETVVPARIFSDLVKKLPEGEV---EVKSDSQNTVNVVSGDINFSIAGSNPEEFPE 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF+L S+LK+L+++T F ++ E+ R L G+ F + +LK AVA DG R Sbjct: 133 IPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGFR 190 Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + A+ S+++P + EI RIL +++ V + + +++ I++ Sbjct: 191 MAIYSYKSEKSFFDEEAEKYSLVIPGDTLDEISRILEDEETEVIIYHTSNQVLFQIDNTK 250 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ +N ++++R S+++ + VK + + Sbjct: 251 VISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEIGDSFIV 310 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + E + V ++I FN +YLL+ + I ++EV +S + Sbjct: 311 ISSSSEKG-SMSEKLEVEVKGMLLEIAFNSRYLLDALKAID-----EEEVNLYFINSINP 364 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 365 LIIKPV---------GEKEYLYMILPVKL 384 >gi|302331774|gb|ADL21967.1| DNA-directed DNA polymerase beta subunit, DnaN [Staphylococcus aureus subsp. aureus JKD6159] Length = 377 Score = 311 bits (796), Expect = 1e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus Mu50] gi|15925707|ref|NP_373240.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus N315] gi|21281731|ref|NP_644817.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MW2] gi|49482255|ref|YP_039479.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MRSA252] gi|49484914|ref|YP_042135.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MSSA476] gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus COL] gi|87160973|ref|YP_492724.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|88193825|ref|YP_498610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus NCTC 8325] gi|148266449|ref|YP_001245392.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus JH9] gi|150392482|ref|YP_001315157.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus JH1] gi|151220214|ref|YP_001331037.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus str. Newman] gi|156978333|ref|YP_001440592.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus Mu3] gi|161508268|ref|YP_001573927.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|221141517|ref|ZP_03566010.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus str. JKD6009] gi|253730401|ref|ZP_04864566.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253733837|ref|ZP_04868002.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|254663936|ref|ZP_05143408.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus Mu50-omega] gi|257424198|ref|ZP_05600627.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257426875|ref|ZP_05603277.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257429511|ref|ZP_05605898.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257432158|ref|ZP_05608521.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus E1410] gi|257435119|ref|ZP_05611170.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257793540|ref|ZP_05642519.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781] gi|258411154|ref|ZP_05681433.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763] gi|258420942|ref|ZP_05683876.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719] gi|258438581|ref|ZP_05689804.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299] gi|258443963|ref|ZP_05692301.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115] gi|258446221|ref|ZP_05694381.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300] gi|258449120|ref|ZP_05697226.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus A6224] gi|258451365|ref|ZP_05699396.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948] gi|258454402|ref|ZP_05702370.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937] gi|262049434|ref|ZP_06022306.1| DNA polymerase III beta chain [Staphylococcus aureus D30] gi|262051883|ref|ZP_06024098.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3] gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|282894281|ref|ZP_06302511.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117] gi|282902633|ref|ZP_06310526.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282910028|ref|ZP_06317836.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282912276|ref|ZP_06320072.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282912916|ref|ZP_06320708.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282918070|ref|ZP_06325820.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|282920721|ref|ZP_06328440.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765] gi|282921292|ref|ZP_06329010.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282922544|ref|ZP_06330234.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282927752|ref|ZP_06335366.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102] gi|283959486|ref|ZP_06376927.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|284023039|ref|ZP_06377437.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus 132] gi|293497969|ref|ZP_06665823.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|293511559|ref|ZP_06670253.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294849830|ref|ZP_06790570.1| DNA polymerase III [Staphylococcus aureus A9754] gi|295406866|ref|ZP_06816670.1| DNA polymerase III [Staphylococcus aureus A8819] gi|295429299|ref|ZP_06821921.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296275685|ref|ZP_06858192.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus MR1] gi|297209450|ref|ZP_06925848.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297245901|ref|ZP_06929763.1| DNA polymerase III [Staphylococcus aureus A8796] gi|297589199|ref|ZP_06947840.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus MN8] gi|300911474|ref|ZP_07128923.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus TCH70] gi|304379950|ref|ZP_07362679.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|60389826|sp|Q6GD88|DPO3B_STAAS RecName: Full=DNA polymerase III subunit beta gi|60389828|sp|Q6GKU3|DPO3B_STAAR RecName: Full=DNA polymerase III subunit beta gi|60392198|sp|P0A022|DPO3B_STAAM RecName: Full=DNA polymerase III subunit beta gi|60392199|sp|P0A023|DPO3B_STAAW RecName: Full=DNA polymerase III subunit beta gi|60392200|sp|P0A024|DPO3B_STAAU RecName: Full=DNA polymerase III subunit beta gi|60392205|sp|P99103|DPO3B_STAAN RecName: Full=DNA polymerase III subunit beta gi|81695636|sp|Q5HJZ4|DPO3B_STAAC RecName: Full=DNA polymerase III subunit beta gi|13699919|dbj|BAB41218.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus N315] gi|14245769|dbj|BAB56164.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus Mu50] gi|21203166|dbj|BAB93867.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus MW2] gi|49240384|emb|CAG39030.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus MRSA252] gi|49243357|emb|CAG41774.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus MSSA476] gi|57285296|gb|AAW37390.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus COL] gi|87126947|gb|ABD21461.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus USA300_FPR3757] gi|87201383|gb|ABD29193.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus NCTC 8325] gi|147739518|gb|ABQ47816.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus JH9] gi|149944934|gb|ABR50870.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus JH1] gi|150373014|dbj|BAF66274.1| DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus str. Newman] gi|156720468|dbj|BAF76885.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus Mu3] gi|160367077|gb|ABX28048.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus subsp. aureus USA300_TCH1516] gi|253725881|gb|EES94610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus USA300_TCH959] gi|253728140|gb|EES96869.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus TCH130] gi|257273216|gb|EEV05318.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 55/2053] gi|257276506|gb|EEV07957.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 65-1322] gi|257279992|gb|EEV10579.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus 68-397] gi|257283037|gb|EEV13169.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus E1410] gi|257285715|gb|EEV15831.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M876] gi|257787512|gb|EEV25852.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781] gi|257840039|gb|EEV64504.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763] gi|257843132|gb|EEV67547.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719] gi|257848140|gb|EEV72132.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299] gi|257850847|gb|EEV74791.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115] gi|257855047|gb|EEV77990.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300] gi|257857553|gb|EEV80448.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus A6224] gi|257860895|gb|EEV83712.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948] gi|257863496|gb|EEV86256.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937] gi|259160210|gb|EEW45239.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3] gi|259162431|gb|EEW47001.1| DNA polymerase III beta chain [Staphylococcus aureus D30] gi|262073982|gb|ACY09955.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus ED98] gi|269939528|emb|CBI47886.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus TW20] gi|282314765|gb|EFB45151.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C101] gi|282315707|gb|EFB46091.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C427] gi|282318355|gb|EFB48715.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus D139] gi|282323016|gb|EFB53335.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M899] gi|282323972|gb|EFB54288.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WBG10049] gi|282326094|gb|EFB56399.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus WW2703/97] gi|282590512|gb|EFB95590.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102] gi|282594129|gb|EFB99117.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765] gi|282597092|gb|EFC02051.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus C160] gi|282763326|gb|EFC03456.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117] gi|283469231|emb|CAQ48442.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus ST398] gi|283789078|gb|EFC27905.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus A017934/97] gi|285815729|gb|ADC36216.1| DNA polymerase III beta subunit [Staphylococcus aureus 04-02981] gi|291096900|gb|EFE27158.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 58-424] gi|291465517|gb|EFF08049.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M809] gi|294823378|gb|EFG39807.1| DNA polymerase III [Staphylococcus aureus A9754] gi|294968331|gb|EFG44356.1| DNA polymerase III [Staphylococcus aureus A8819] gi|295127058|gb|EFG56702.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16] gi|296885911|gb|EFH24846.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC 51811] gi|297177266|gb|EFH36519.1| DNA polymerase III [Staphylococcus aureus A8796] gi|297577710|gb|EFH96423.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus MN8] gi|300887653|gb|EFK82849.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus TCH70] gi|302749913|gb|ADL64090.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus subsp. aureus str. JKD6008] gi|304341530|gb|EFM07440.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus ATCC BAA-39] gi|312436857|gb|ADQ75928.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus subsp. aureus TCH60] gi|312828565|emb|CBX33407.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus ECT-R 2] gi|315129545|gb|EFT85537.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus CGS03] gi|315195228|gb|EFU25616.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus CGS00] gi|315197920|gb|EFU28253.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus CGS01] gi|320141419|gb|EFW33262.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus MRSA131] gi|320144402|gb|EFW36167.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus MRSA177] gi|323439697|gb|EGA97415.1| DNA polymerase III subunit beta [Staphylococcus aureus O11] gi|323443270|gb|EGB00887.1| DNA polymerase III subunit beta [Staphylococcus aureus O46] gi|329725853|gb|EGG62332.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 21172] gi|329731811|gb|EGG68171.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 21189] gi|329732483|gb|EGG68833.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus 21193] Length = 377 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|82749779|ref|YP_415520.1| DNA polymerase III subunit beta [Staphylococcus aureus RF122] gi|82655310|emb|CAI79690.1| DNA polymerase III beta chain [Staphylococcus aureus RF122] Length = 377 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VNGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|297184135|gb|ADI20254.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11] Length = 373 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 177/386 (45%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L II+ NT+P+ + L + G L + AS E ++ + Sbjct: 1 MKFIVSSSKLLKQLQLIGGIIQSNNTLPILDNFLFELKQGELTVSASDLETMMSVNLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L D ++ + F E E+ + + L EFP Sbjct: 61 SEDHGAAAVPAKTLLDTLKTFPEQPLTFTFDEGAHSIEL--ASDYGKYSLAYIDGEEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + L + L + +T FA +E+R ++G+FF L VATD H+ Sbjct: 119 FPELEDASTANLPAEALVTGITKTLFATGNDELRPVMSGVFFQFESNSLTF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V A I+P+K + + LS S V+V + + +++ + R Sbjct: 177 L-VRYRRTDLGAADTAEFIMPKKPLNMLRGSLSYDSSEVEVVYNNTNARFTFDNVVLVCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP SN + ++ + +V RV+I S+ ++L L+ ++ ++ + Sbjct: 236 LIDGKYPNYEAVIPQSNPNVMLIDRSAFSSSVKRVAIFSNKTTHQIRLKLAGAEISVSAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +PD KA E ++ Y M+I FN ++LLE++ N+ S D V + + N + + Sbjct: 296 DPDFSNKAHERISCDYQGDDMEIGFNSRFLLEMLSNLGS-----DNVRMEMSAPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++ N ++MP+ + Sbjct: 351 IPAD-----GMNDGENLLMLVMPVML 371 >gi|327438161|dbj|BAK14526.1| DNA polymerase sliding clamp subunit [Solibacillus silvestris StLB046] Length = 378 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R +L L + + K TIP+ + + + + + S +I I IP Sbjct: 1 MKFNILRDRLLAGLNDVMKAVSSKTTIPILTGIKIDVTNEGMTLTGSDADITIQTFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A + +I+RKL E G I G S F+L Sbjct: 61 ENGEQIMDITQTGSIVLQARMYNEIIRKLPTNEV---EIEITNGYATIIRSGKSEFHLIG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E F + + +LK+++ T FA+AT E R L G+ + + + L Sbjct: 118 LDATEYPQLPEIAADRQFTIPTDLLKSVIRETVFAVATSESRPVLTGVNWKVEGDA--LI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V++ + S+++P K++ E+ +IL ++ V++ L+ + Sbjct: 176 CVATDSHRLARRKVNLENLPNDITSVVIPGKSLNELNKILEDTNNPVQIVLTNQHVLFKT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-SL 290 + + RL++G +P+ +IP + +N +L QA+DR S+++ R V+ +L Sbjct: 236 DDVLFFSRLLEGNYPDTSRLIPEEFKTMITINGKSLLQAIDRASLLAREDRNNVVRFETL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++GK E + V + I F+ KY++E + I + VV Sbjct: 296 ENQTVEISSNSPEIGKVEEQIQVESLEGENLKISFSAKYMMEALKAIDGQD-----VVIE 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R D+ +++P+R Sbjct: 351 FTGAMRPFILRSVADDAI---------LQLILPVR 376 >gi|300934348|ref|ZP_07149604.1| DNA polymerase III subunit beta [Corynebacterium resistens DSM 45100] Length = 394 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 94/399 (23%), Positives = 171/399 (42%), Gaps = 28/399 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + TV + D LG R + K T PV VL++AND L + E+ I A V Sbjct: 7 RFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFDREVSTQITINAEV 66 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G I ++ L+ DIV L D KE T+V ++ G S F L + ++P Sbjct: 67 DEPGRILIAGKLVNDIVGSLPDKPITLELKE----TKVLVTSGSSRFELPAMTIEDYPEL 122 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 V + V + A ++ L G+ ++ E++ + ATD RL Sbjct: 123 PSLPGVTGTIDP-HLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTM--AATDRFRL 179 Query: 182 AVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLS-------ESRIHLNI 232 AV + AQ ++++P + + + R L + +++++ + + + Sbjct: 180 AVRTLQWNPAQADGQATLLIPARTLSDTARSLDAQSSDPIEIAVGSGDSIGQDGLLGIAT 239 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 +S + RL+D EFP ++ ++P S+ V L+ A+ RVS+++ R +++ Sbjct: 240 DSRHTTTRLLDAEFPKFRPLLPTSHTAVASVEIAPLQDAIRRVSLVA-DRNSQIRMQFEE 298 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ ++G A E + + P++I FN YL E + I + VVF Sbjct: 299 GSLTLSAGGSEVGSATEQLQCAFAGEPLEIAFNPGYLKEGLGAIHT-----PRVVFGFTL 353 Query: 353 SNSSVFIR------GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + N + + Y+LMP+RI Sbjct: 354 ASRPAIMIPDAGNLPEADAEGNFATPETDFTYLLMPVRI 392 Score = 46.4 bits (109), Expect = 0.009, Method: Composition-based stats. Identities = 27/183 (14%), Positives = 66/183 (36%), Gaps = 16/183 (8%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 F + + ++ ++ + L G+ N+E L L R Sbjct: 3 NNNVRFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFD----REVST 58 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LID 243 ++ I A++ + I++ K V +I+ L D + + L E+++ + S + + Sbjct: 59 QITINAEVDEPGRILIAGKLVNDIVGSLP--DKPITLELKETKVLVTSGSSRFELPAMTI 116 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMT 298 ++P +P ++ +AV +V+ + V + L + + M Sbjct: 117 EDYPE----LPSLPGVTGTIDPHLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTMA 172 Query: 299 VDN 301 + Sbjct: 173 ATD 175 >gi|331700397|ref|YP_004397356.1| DNA polymerase III subunit beta [Lactobacillus buchneri NRRL B-30929] gi|329127740|gb|AEB72293.1| DNA polymerase III, beta subunit [Lactobacillus buchneri NRRL B-30929] Length = 379 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 177/395 (44%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R+ + L R I K TIP+ + + A L + S +I I + A Sbjct: 1 MKFSIGRTAFTKGLNTVSRAISTKTTIPILTGLKIVAGPDGLVLTGSDADISIETTLKAD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +IV+KL EN + I+ G S+F + Sbjct: 61 DPDNMLVIESEGAIVLPARFFTEIVKKLPKDTITLEVGEN---FQTMITSGQSSFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + S LA+ + K ++ +T A++ +E R L G+ F I++ + A Sbjct: 118 DANNYPHLPEIQTNDSIPLAADLFKQIISQTVVAVSNQESRPILTGVHFVISDN--HVMA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + I ++P K++ E+ +++ V +S++E++ I Sbjct: 176 VATDSHRLSQRKVTLETPINGSYDFVIPGKSLTELSKMIDDGQDEVSLSVTENQALFVIG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RL++G +P+ +IP S+D + L A++R S++S R VK+++ Sbjct: 236 NTLFYSRLLEGNYPDTTRLIPDSHDTRISFEAPELLAAIERASLLSHESRNNVVKITIDP 295 Query: 293 DK--LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 DK + + ++PD+G E + ++I FN Y+ + + + + + D Sbjct: 296 DKKTVTIYGNSPDVGNVEEDLEPKSLEGNELEISFNPDYMKDALRSFTQATINID----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + + ++ P+R Sbjct: 351 FTSALRPFTLTPTED--------SDSFVQLITPIR 377 >gi|116871424|ref|YP_848205.1| DNA polymerase III subunit beta [Listeria welshimeri serovar 6b str. SLCC5334] gi|116740302|emb|CAK19420.1| DNA polymerase III, beta subunit [Listeria welshimeri serovar 6b str. SLCC5334] Length = 381 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379 >gi|315286762|ref|ZP_07872176.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596] gi|313630891|gb|EFR98583.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596] Length = 381 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 DNGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379 >gi|294788719|ref|ZP_06753960.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453] gi|294483201|gb|EFG30887.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453] Length = 367 Score = 311 bits (796), Expect = 2e-82, Method: Composition-based stats. Identities = 116/384 (30%), Positives = 206/384 (53%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R +L+ L I+ERK+T+P+ +VLL++ DG + I A+ EI+I + Sbjct: 4 LQTDRDSLLKPLQAVTGIVERKHTLPILSNVLLESKDGRIHILATDLEIQIHTQGAENDK 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 +T +A L DI+R L DGA + + + + G S F LQ+ P +FP+ Sbjct: 64 GDFRLTTNAKKLQDILRALPDGAIVQL---DWADNRLTLKAGKSRFNLQTLPAEDFPTMS 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + F L K+++ + ++MA ++IRYYLNG+ + E L+L V+TDGHRL Sbjct: 121 VNDSAQVRFSLTQETFKHMISQVQYSMAVQDIRYYLNGLLLQVEENQLRL--VSTDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A + +I A ++K +I+PRK V E+ ++L+ + +++ L ++I L + ++ Sbjct: 179 AYSVCEIEANLSKTE-VILPRKTVLELNKLLNQPNELIEIELLGNQIRLTCNDTVIVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP+Y VIP NDK ++ T+L A++R +I+++ + + VKL LS+ L ++ N Sbjct: 238 IDGKFPDYNRVIPLDNDKIFLISRTDLLGALERSAILANEKFKGVKLFLSAGLLRVSCTN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A E + + Y +++ FN YL +++ N D++ L + + S Sbjct: 298 NEQEEAQEELEIAYQGESLEVSFNINYLTDVLRNTHC-----DDIQIALGNEHKSSLFTK 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D+ + YV+MPMRI Sbjct: 353 PDE---------ADFKYVVMPMRI 367 >gi|126662353|ref|ZP_01733352.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38] gi|126625732|gb|EAZ96421.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38] Length = 373 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 184/386 (47%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L++ AS E +T + Sbjct: 2 MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELDNNQLKVSASDLETTMTSTLEID 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ + A LL DI++ + ++N + V IS + + P EFP Sbjct: 62 STSQGSVAIPAKLLLDILKTFPEQPLTFTVEDN---STVEISSNSGKYAIAYAPGEEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VL V +T FA +++R ++G+FF + E L VATD H+ Sbjct: 119 AVVLDDPSKTLVPAEVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEG--LIFVATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +++ I+P+K + + IL + D+ V + ++S + E+ ++ R Sbjct: 177 LVKYART-DVKASQVADFIMPKKPLNILKGILGASDAEVSIEYNDSNATFSFENYVLTCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L +N +V RV+I ++ ++L ++ +L ++ + Sbjct: 236 LIDGKYPNYEAVIPKENPNKLLINRVQFLNSVRRVAIFANKTTHQIRLKIAGTELNISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N+SS DE+ + N + + Sbjct: 296 DIDYSNKADERLTCDYQGDDMQIGFNSRFLTEMLNNLSS-----DEIQLEMSMPNRAGIL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 351 TPVD-----GLDEGETVTMLVMPVML 371 >gi|225630799|ref|YP_002727590.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi] gi|225592780|gb|ACN95799.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi] Length = 385 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 130/384 (33%), Positives = 218/384 (56%), Gaps = 20/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N+I V + ++A G +++ A+ +I + ++ A+ Sbjct: 21 MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 80 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ Sbjct: 81 VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 138 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 139 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 196 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L+IL + +KV LS+ +I L + + Sbjct: 197 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 255 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FPNY+ VIP S DK + + L +DRVS++ S +++++K SL L + + Sbjct: 256 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 315 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + A ES+ V YNE P++I FN +YLL+++ I ++ F L NS+ I Sbjct: 316 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGNSATIIT 369 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D S YV+MPMR Sbjct: 370 DEDDSSV---------LYVVMPMR 384 >gi|298693324|gb|ADI96546.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus ED133] Length = 377 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVIELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|34495457|ref|NP_899672.1| DNA polymerase III subunit beta [Chromobacterium violaceum ATCC 12472] gi|34101313|gb|AAQ57682.1| DNA-directed DNA polymerase, beta subunit [Chromobacterium violaceum ATCC 12472] Length = 369 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 113/385 (29%), Positives = 197/385 (51%), Gaps = 21/385 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 + ER +L+ L I+ER++T+P+ +VL++ G + A+ EI+IT A + Sbjct: 4 LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKGGQVGFLATDLEIQITTASSDELP 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 +T SA L DI+R + A ++ E G + + G S F LQ+ P +FP Sbjct: 64 GEDFRLTTSAKKLQDILRAIPGNATVT--LEQLDGGRLVLKAGKSRFNLQTLPAEDFPLL 121 Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 SF L+ LK L+ + +AMA ++IRYYLNG+ + ++L VATDGHR Sbjct: 122 SVGSAGESSFTLSQRELKRLISQVQYAMAVQDIRYYLNGLLMQTDGNQVRL--VATDGHR 179 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A D+ A + K +I+PRK + E+ ++L D +K+ + +++ + + + + Sbjct: 180 LAFASADVAATLPK-AEVILPRKTIIELYKLLQDSDDEIKIEVLANQVRFSFGATVIISK 238 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++DG+FP+Y VIP NDK + A+ R +I+++ + + V+L L+ K+ + Sbjct: 239 VVDGKFPDYNRVIPLDNDKIFLIERLEFLHALQRAAILANEKFRGVRLVLAPGKMSILCT 298 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + +A E + + + ++I FN YLL+++ N+ + D + S+ S Sbjct: 299 NSEQEEAEEELEIAFQGGTLEIGFNINYLLDVLTNLPA-----DTLQLAFGDSSRSALFT 353 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MPMRI Sbjct: 354 IPD---------VSNFKYIVMPMRI 369 >gi|16799081|ref|NP_469349.1| DNA polymerase III subunit beta [Listeria innocua Clip11262] gi|16412423|emb|CAC95235.1| DNA polymerase III, beta chain [Listeria innocua Clip11262] Length = 381 Score = 310 bits (795), Expect = 2e-82, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I D KL Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIK--DNKLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379 >gi|257054091|ref|YP_003131923.1| DNA polymerase III subunit beta [Saccharomonospora viridis DSM 43017] gi|256583963|gb|ACU95096.1| DNA polymerase III, beta subunit [Saccharomonospora viridis DSM 43017] Length = 379 Score = 310 bits (794), Expect = 2e-82, Method: Composition-based stats. Identities = 99/394 (25%), Positives = 166/394 (42%), Gaps = 26/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG------LLEIKASGPEIEIT 54 MKI VER + E + R + + +PV VLL A L I E+ T Sbjct: 1 MKIRVERDGLAEAVAWVARSLPSRPPVPVLGGVLLDAGGDSGDGADTLTISGFDYEVSAT 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +P+++ G VS LL DI + L + G V+I+ G++ F L + P Sbjct: 61 AGVPSTIAEGGRTLVSGRLLADITKALPAQPVDISVE----GARVSITCGNAKFSLPTMP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P + + E+A V + A ++ L G+ I L L V Sbjct: 117 VEDYPELPA-QPELAGEVAGDAFAQAVAQVAVAAGKDDTLPMLTGMRVEITGSTLTL--V 173 Query: 175 ATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 ATD RLA+ E A+ +++VP + + + + L S ++V++ L+ L + Sbjct: 174 ATDRFRLAMREFSWQPAEGITDSAVLVPARTLADAAKSLGSAGTTVQIGLAGGDGLLGLS 233 Query: 234 SLS--MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RLID EFP Y+ ++P ++ L +A+ RVS+++ R V+L Sbjct: 234 GGGKFTTTRLIDAEFPPYRQLLPSDYSSRAILHVPALTEAIKRVSLVA-ERGTQVRLEFE 292 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + D G A E + V Y P+ I FN YL + + + + + Sbjct: 293 DGSLRLAAGGDDEGSAEEELPVDYEGEPVTIAFNPSYLADGLGALHA-----ERAELTFT 347 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N I+ D N + Y+LMP+R+ Sbjct: 348 TPNRPALIKPADD----NGEVVPGYLYLLMPVRL 377 >gi|282907049|ref|ZP_06314897.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus subsp. aureus Btn1260] gi|282329948|gb|EFB59469.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus subsp. aureus Btn1260] Length = 377 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPGQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|258423236|ref|ZP_05686128.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635] gi|257846565|gb|EEV70587.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635] Length = 377 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 IDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|228474178|ref|ZP_04058915.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119] gi|314935202|ref|ZP_07842555.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp. hominis C80] gi|228271873|gb|EEK13210.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119] gi|313656537|gb|EFS20276.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp. hominis C80] Length = 376 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 1 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNNVILTGSDSEISIEITIPKQ 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 61 VDGEDIVDITETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 118 LDPEQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 176 CTATDSHRLAVRKLKLEDE-SENKNVIIPGKALSELNKIMSDNDEDIDIFFASNQVLFKV 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 235 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 294 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + + I FN KY+++ + I ++EV Sbjct: 295 NEVIELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAID-----NEEVEVEF 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 350 FGTMKPFILKPKADDSVTQ---------LILPIR 374 >gi|319893739|ref|YP_004150614.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius HKU10-03] gi|317163435|gb|ADV06978.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius HKU10-03] Length = 376 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 1 MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL E + I+ S F L Sbjct: 61 VDGQEIINLVEPGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSAHSEFNLSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 118 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNE--LL 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +I ++I+P KA+ E+ +I++ + + + + +++ + Sbjct: 176 CTATDSHRLAVRKLKLEEEIED-KNVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N ++ A+DR S+++ +KLS Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 294 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ ++ +P++G E + + I FN KY+++ + I ++EV Sbjct: 295 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NEEVEVEF 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD D+ +++P+R Sbjct: 350 FGTMKPFILKPKDDDTVTQ---------LILPIR 374 >gi|291612474|ref|YP_003522631.1| DNA polymerase III, subunit beta [Sideroxydans lithotrophicus ES-1] gi|291582586|gb|ADE10244.1| DNA polymerase III, beta subunit [Sideroxydans lithotrophicus ES-1] Length = 367 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 116/383 (30%), Positives = 206/383 (53%), Gaps = 23/383 (6%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-V 63 ++R+++L+ L I+ERK +P+ +VL++ + + EI+I + A+ D Sbjct: 6 IDRNELLKPLQAVVGIVERKQPLPILSNVLIKKTKDSVRFITTDLEIQIEAQLRATFDAT 65 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 SIT+SA L +I+R + D + ++ + ++ + S F LQ+ P +FP E Sbjct: 66 ESSITISAKKLQEILRAIPDNSMVTL---DNQDNKLLVKANKSRFSLQTLPAQDFPILSE 122 Query: 124 -EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 E+ VL+ L+ +AMA ++IRYYLNG+ I+E +KL +ATDGHRLA Sbjct: 123 QLIGASKIEIEQGVLRRLLSSVQYAMAQQDIRYYLNGVLLVIDETTIKL--IATDGHRLA 180 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 ++ + K +I+ RK V E+L++L+ + V++ L+E ++ ++ + ++ ++I Sbjct: 181 FISEELKEKHQKQE-VILSRKTVNELLKLLADSEDKVQLELAEKQVRISFADVILTSKVI 239 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG+FP+Y VIP + L ++ + QA+ R +I+S+ + + V+L L+ L + N Sbjct: 240 DGKFPDYNRVIPA-HTNHLTLDRLTILQALQRAAILSNEKFRGVRLLLTEKNLRVISSNS 298 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + +A E + Y+ P+DI FN YLL+ I+NI++ V NSS+ I Sbjct: 299 EQEEAQEDIENDYSGAPLDIGFNVNYLLDGINNINTQT-----VTLSFGDQNSSLLITIP 353 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 + K + YV+MPMRI Sbjct: 354 E---------KSDYKYVVMPMRI 367 >gi|323463202|gb|ADX75355.1| DNA polymerase III, beta subunit [Staphylococcus pseudintermedius ED99] Length = 377 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 61 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL E + I+ S F L Sbjct: 62 VDGQEIINVVEPGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSAHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L VLKN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNE--LL 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +I ++I+P KA+ E+ +I++ + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLKLEEEIED-KNVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L +N ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ ++ +P++G E + + I FN KY+++ + I ++EV Sbjct: 296 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NEEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD D+ +++P+R Sbjct: 351 FGTMKPFILKPKDDDTVTQ---------LILPIR 375 >gi|254520695|ref|ZP_05132751.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA] gi|226914444|gb|EEH99645.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA] Length = 366 Score = 310 bits (794), Expect = 3e-82, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M E+ + E + A + I K T+P+ + + A + L + S ++ I + A Sbjct: 1 MIFICEKQKLQEGISIANKAITGKTTMPILEGIYINAKNEGLTLIGSDMDVSIETKVDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +I+RKL + EN++ + I+ S F L ++P+ Sbjct: 61 ILEEGMIVIDARIFGEIIRKLPNSDIKIETLENDI---IQITCEKSVFNLVYMNGEDYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S E++ ++LKN+++ T FA+A +E R L GI F + ++L L VA DG+R Sbjct: 118 LPSINENLSVEVSQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + +++P K + E+ +IL VK++ + + I N+ + + R Sbjct: 176 LAVRSEFLDND--NEIEVVIPGKTLNEVSKILEDVSDIVKITFTNNHILFNLNNTKVISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299 L+DG+F NY +++P + + VN L+ ++R S+M+ +KL + + + +T Sbjct: 234 LLDGKFVNYSSLLPQEHKILVDVNKQQLQSCIERASLMAKDSNSNLIKLEVQEENMIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E + + P+ I FN +YLL+++ N+ DDEV + SS S I Sbjct: 294 -NSQLGKVREELTINLQGEPIQIAFNSRYLLDVLKNVD-----DDEVKLEMTSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ D N+ Y+++P+R+ Sbjct: 348 KCKNTD---------NSKYLVLPVRL 364 >gi|220930852|ref|YP_002507760.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168] gi|219992162|gb|ACL68765.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168] Length = 367 Score = 309 bits (793), Expect = 3e-82, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 188/385 (48%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 M+ T+ + D + R + KNT+P+ + L+A D L +KA+ E+ I + A Sbjct: 1 MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVKA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G I + A L I+R+L D FK + E ++ S F ++ F EFP Sbjct: 61 DIITEGKIVLPASHLSGIIRELPDDNI--NFKADLDKYEAELTCLSSRFKIKGFDADEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + L L L++ F+ +T++ + L G I + K+ VAT+ + Sbjct: 119 QLPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVI--DSGKIRMVATNTY 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+++ +D+ +I+P + E+ +L D V++ + ++ + N + + Sbjct: 177 RLSLSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 R+I+G+FPNYQ V+P + ++RV+ NL ++V RVS+++ + + +S+ +K+ +T Sbjct: 236 RVIEGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + G A E + + +I + YLL+++ ++ DD V+ L + + + Sbjct: 296 QDSEEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLN-----DDVVILELIGPLNPLTL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + K+N + Y++MP+R Sbjct: 351 K---------KENSDDFIYLVMPVR 366 >gi|283767792|ref|ZP_06340707.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus H19] gi|283461671|gb|EFC08755.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus H19] Length = 377 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 186/394 (47%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 E+++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 ENVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|73661311|ref|YP_300092.1| DNA polymerase III subunit beta [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] gi|72493826|dbj|BAE17147.1| DNA polymerase III beta subunit [Staphylococcus saprophyticus subsp. saprophyticus ATCC 15305] Length = 376 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 91/394 (23%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R + L + I + T+P+ + ++ + + + S EI I IP Sbjct: 1 MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIEVKNNEVILTGSDSEISIEITIPKQ 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + DI++KL E + I+ G S F L Sbjct: 61 VDGEDIIDIVETGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSGHSEFNLSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 118 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV +V + ++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 176 CTATDSHRLAVRKVALE-DDSENKNVIIPGKALSELNKIMSDSEEDIDIFFASNQVLFKV 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 294 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + + + I FN KY+++ + I +DEV Sbjct: 295 NELVELSSTSPEIGTVKEDVKASNVDGGNLKISFNSKYMMDALKAID-----NDEVEVEF 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 350 FGTMKPFILKPKDDDSVTQ---------LILPIR 374 >gi|262377660|ref|ZP_06070880.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145] gi|262307419|gb|EEY88562.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145] Length = 382 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 110/400 (27%), Positives = 200/400 (50%), Gaps = 33/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M++ + + +L +L H +ER++T+ + ++ +Q L + S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNLKIQVTAQALTVTGSDLEVELVASTALA 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L DI + L A + + + G+S F L + P + Sbjct: 61 EGACLQEGETTVPARKLIDICKSLPSAALVDLHITEDQ--RCILKSGNSRFVLGTLPADD 118 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E + LK L E+T FAMA +++R+YL G I+ L+ AV T Sbjct: 119 YPLLNTENTQGTQVTVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLR--AVTT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234 DGHRLA+ E + + IVPRKAV E+ R+LS +D + + + +++ I Sbjct: 177 DGHRLALCETVAQSTATQPIQAIVPRKAVAELQRLLSVEDEQLSLLIGRELLNVTINMSS 236 Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + +LIDG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ Sbjct: 237 RDKEQADIIVRFTTKLIDGKFPDYRRVIPRGGDKVVMIAHDVFKQSLQRVAILSNEKLRG 296 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V L+ ++D L + +NP+ +AIE + + Y + P+++ FN +YL+E++ + D+ Sbjct: 297 VFLNFNADSLQLRANNPEQDEAIEDLVIQYADSPLEMSFNAQYLIEVLGVLDG-----DD 351 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + +N SV ++ + YV+MPMR+ Sbjct: 352 VSMTMTEANQSVLVQDP---------AHTDQTYVVMPMRV 382 >gi|195546611|ref|YP_002117639.1| p081 [Rhizobium phage 16-3] gi|102642576|gb|ABF71357.1| p081 [Rhizobium phage 16-3] Length = 378 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 130/386 (33%), Positives = 202/386 (52%), Gaps = 30/386 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + R+ + +L + R++E +NTIP+ + L A DG L + + +I T A Sbjct: 21 MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDIVATDTAAAD 80 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++ V A LL DI +K +S E ++ + G S F L + P ++FP Sbjct: 81 VTEGGAVCVDAKLLSDIAKKTGGDVSLS-----EDKGQLIVKSGRSRFSLPALPAADFPD 135 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATDGH 179 EY SF++ L L FA++TEE R+YLNGIF H++E+ D + AVATDGH Sbjct: 136 LSGGEYTASFDMD---LAALFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGH 192 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ + + A +IVPRK VG + + +V+VS+SE++I + ++ Sbjct: 193 RLSRHQAAYPGEDA-FKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTS 245 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LIDG FP+YQ VIP NDK++ ++RQA RVS++SS R +AVKLS + + + V Sbjct: 246 KLIDGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAV 305 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G A + + V Y+ P+DI FN YL E++ + ++ L S Sbjct: 306 SSPETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPA-----GDITLALADGGSPSVF 360 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + VLMPMR+ Sbjct: 361 TSEKAPEL---------LAVLMPMRV 377 >gi|310825636|ref|YP_003957993.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612] gi|308737370|gb|ADO35030.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612] Length = 371 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 202/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R ++ L A + + K T+PV +L Q + L + ++ EI + +IPA+ Sbjct: 1 MKFSCSRDALINALSIAQKGVSNKTTLPVLEGILFQVYNNQLVLTSTDLEIGVQTSIPAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD+ G I +S++L+ +++RKL G ++ F K++ +V I SNF ++ FP EFP Sbjct: 61 VDMDGEIILSSNLITEVIRKL-SGEEVFFQKDD--SNQVKIECLLSNFTIKGFPTDEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +SF + + VLK ++ T F++A E L G+ I + + L +A DG+R Sbjct: 118 FPEVIEEHSFVIEAGVLKEMIRGTIFSVAVSENIPVLTGLKMEIENDAISL--IALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ + I S+I+P K++ E+ ++LS + +V V S+++I + + + R Sbjct: 176 LSLKRGKLKEAIDGSISVIIPGKSMNELNKLLSGYNENVIVKFSKTQIFFEMGNTQFTSR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF NY+++IP +++V+ L ++ +R ++++ + +K+ + D+L +T Sbjct: 236 LLEGEFINYKHIIPTEKATQVKVSRKLLLESSERAALLAREGKNNLIKMDFNIDQLILTS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + + P+ I FN K+ ++ + I DE+ L +S I Sbjct: 296 -NAEIGDVFEVIPIENQGDPIKIAFNSKFFIDALKVID-----RDEMSIELTTSVGPAVI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + Y+++P+RI Sbjct: 350 VPADGSDE--------FIYLILPVRI 367 >gi|47097284|ref|ZP_00234842.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a F6854] gi|47014329|gb|EAL05304.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a F6854] Length = 378 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 99/380 (26%), Positives = 186/380 (48%), Gaps = 21/380 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ ++L S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNN 369 + +R KD + N Sbjct: 351 FSGTMRPFVLRPKDAANPNE 370 >gi|166366608|ref|YP_001658881.1| DNA polymerase III subunit beta [Microcystis aeruginosa NIES-843] gi|166088981|dbj|BAG03689.1| DNA polymerase III beta subunit [Microcystis aeruginosa NIES-843] Length = 382 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 187/396 (47%), Gaps = 27/396 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK T +S++ L R + + T PV +VL A++ G + + A + I + Sbjct: 1 MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPE 115 A V G IT+ A LL DIV +L +G +ENE E ++ + F ++ Sbjct: 61 AEVVEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP L L ++ FA + +E + L G+ + L+ A Sbjct: 121 DEFPELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGVHLTKTVDCLEF--AA 178 Query: 176 TDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLN 231 TDGHRLAV + + + ++ +P +A+ E+ R++++K ++ + + +S++ Sbjct: 179 TDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQVIFE 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL- 290 + ++ R ++G +P Y +IP S D+ L ++ L + ++ V+++S + VK SL Sbjct: 239 MGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLD 298 Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +D+L + V++PD+G A ESM DI FN KYL++ + + +++ + + Sbjct: 299 SENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQ 353 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++S V + Y++MP++I Sbjct: 354 LNASTQPVIFTP---------LGGLKMTYLVMPVQI 380 >gi|317126743|ref|YP_004093025.1| DNA polymerase III subunit beta [Bacillus cellulosilyticus DSM 2522] gi|315471691|gb|ADU28294.1| DNA polymerase III, beta subunit [Bacillus cellulosilyticus DSM 2522] Length = 380 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 101/397 (25%), Positives = 185/397 (46%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++ R ++ + H + I + TIPV + ++A+ + + S +I I IP Sbjct: 1 MKFSINRDQFVQSVQHVSKAISPRTTIPVLTGIKIEASFDGVTLTGSDSDISIESFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + E + T + G S F L Sbjct: 61 DEEIQNVELEQPGSIVLPARFFAEIVKKLPEDTIELSVSEQFVTT---LKSGSSVFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +E+P E E F+L + +LKN++ +T FA++T E R L G+ + I E+ L Sbjct: 118 LDPNEYPRLPEIEEDNVFKLKTDLLKNIIRQTVFAVSTVETRPILTGVHWAI--EEGTLA 175 Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ ++++P K++ E+ +IL + V + ++E++I Sbjct: 176 CTATDSHRLAMRNAKAETNTNDLSFSNVVIPGKSLNELSKILDDNEEWVDIIVTENQILF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288 ++L RL+DG +P N+IP ++ +++ QA++R ++S + V L Sbjct: 236 KAKNLLFFSRLLDGNYPATNNMIPTNSKTNVKLETKKFMQAIERALLLSRDGKNNVVNLK 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +LS+ L +T P++GK E + +N + I FN K +++ + I S EV Sbjct: 296 TLSNTHLEITSVTPEVGKVTEDVATLDFNGEELRISFNGKNIIDALRVIDST-----EVT 350 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S I+ + + N ++ P+R Sbjct: 351 IDFTGAMSPFVIKPTEHE---------NMLHLFSPVR 378 >gi|159029576|emb|CAO90235.1| dnaN [Microcystis aeruginosa PCC 7806] Length = 382 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 187/396 (47%), Gaps = 27/396 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK T +S++ L R + + T PV +VL A++ G + + A + I + Sbjct: 1 MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPE 115 A V G IT+ A LL DIV +L +G +ENE E ++ + F ++ Sbjct: 61 AEVLEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP L L ++ FA + +E + L G+ + L+ A Sbjct: 121 DEFPELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGVHLTKTVDCLEF--AA 178 Query: 176 TDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLN 231 TDGHRLAV + + + ++ +P +A+ E+ R++++K ++ + + +S++ Sbjct: 179 TDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQVTFE 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL- 290 + ++ R ++G +P Y +IP S D+ L ++ L + ++ V+++S + VK SL Sbjct: 239 MGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLD 298 Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +D+L + V++PD+G A ESM DI FN KYL++ + + +++ + + Sbjct: 299 SENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQ 353 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++S V + Y++MP++I Sbjct: 354 LNASTQPVIFTP---------LGGLKMTYLVMPVQI 380 >gi|314934959|ref|ZP_07842318.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87] gi|313652889|gb|EFS16652.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87] Length = 377 Score = 309 bits (793), Expect = 4e-82, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A D + + S EI I IP Sbjct: 2 MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVEISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P E + +L+ V+KN++ +T+FA++T E R L G+ + I + + L Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVIKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + ++ ++I+P KA+ E+ +I+S D + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L + + A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGIINGDFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + ++ +P++G E + + I FN KY+++ + I +DEV Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ KD DS +++P+R Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375 >gi|304315539|ref|YP_003850684.1| DNA polymerase III subunit beta [Thermoanaerobacterium thermosaccharolyticum DSM 571] gi|302777041|gb|ADL67600.1| DNA polymerase III, beta subunit [Thermoanaerobacterium thermosaccharolyticum DSM 571] Length = 370 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 189/388 (48%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ +L + + + + T+P+ +LL A D L + ++ EI I + A Sbjct: 1 MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLTAKDNKLVMYSTDMEIGIECKVDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI VS+ + D+VRKL + ++ VNI G S F + EFP Sbjct: 61 IVEEGSIVVSSKVFSDLVRKLPENTIYFTTDQD---YIVNIKCGLSEFTISGNSSEEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +F + +VLK +++ T F +A + R L GI I++ + VA DG+R Sbjct: 118 IPEVLKEITFSINQNVLKEMIKMTSFCVAQDMTRPILTGILMEISKN--TINMVALDGYR 175 Query: 181 LA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +A D++ + S+++P E++RI+ D +V VS + ++I I + Sbjct: 176 MAIKKYISEDLLLKEFDDFSVVIPGTTANELVRIMEDNDDNVYVSFTGNQILFEINDTKV 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L+DG + NY+ VIP + + +L A+DR S+++S + +K + + +L + Sbjct: 236 ISKLLDGNYMNYKAVIPKDFKSIVIIEKDDLIGAIDRASLLASNKSNLIKFTFNERELII 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + GK E +N+ ++I FN +YLLE + I S +++ + +S + + Sbjct: 296 SS-NSEKGKMSERVNIDIEGNLIEIAFNSRYLLEALRVIDS-----EKIKMNMINSINPM 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D + Y+++P+++ Sbjct: 350 IITPVEDD---------DYLYMVLPVKL 368 >gi|282895332|ref|ZP_06303534.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9] gi|281199638|gb|EFA74498.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9] Length = 384 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 29/398 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T P+ +VLLQA++ + + A + I + Sbjct: 1 MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADENTNQVSLTAFDLSLGIRTSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQIS-----FFKENELGTEVNISHGDSNFYLQSF 113 A V G+I + A +L DI +L +G K G + + + L+S Sbjct: 61 AEVIEGGAIALPAKILVDITSRLPEGDITLDNQSGRSKAKAEGINFILKPKNGKYELRSM 120 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 EFP E + +L ++ L ++ + FA +++E + L G+ + ++ L+ Sbjct: 121 GAEEFPELPLIENSNAIQLTTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEF-- 178 Query: 174 VATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIH 229 ATDGHRLAV + + + + VP +A+ E+ R+L+ + +V + L E +I Sbjct: 179 AATDGHRLAVLETINERPLENDEQLEVTVPARALRELQRMLNHSASEEAVSLYLDEGQIV 238 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 ++ ++ R ++G++P+Y+ +IP +++L + ++R++I++ + VK++ Sbjct: 239 FAWQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNNIVKIN 298 Query: 290 LS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++ ++ ++ + D+G A ESM + + I FN KYLLE + + S E+ Sbjct: 299 INTGDQEITLSCEAQDVGNATESMPAQISGEDIVIAFNVKYLLEGLKELPST-----EIQ 353 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+ S + V + Y+ MP+++ Sbjct: 354 MHLNQSLTPVIFTP---------LGGLKMTYLAMPVQL 382 >gi|161723112|ref|YP_288065.2| DNA polymerase III subunit beta [Thermobifida fusca YX] Length = 380 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 29/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGA 56 MK VER + + + R + + ++PV +LL A+D L + + E+ + Sbjct: 1 MKFRVERDVLADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVS 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + +D G I VS LL +IVR L + + G +V +S G + F + + P Sbjct: 61 VDVDIDEPGRILVSGKLLAEIVRNLPPQT----VEVSTDGAKVVVSCGSAKFTILTLPVE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ + + S V + A ++ L G+ I + L V+T Sbjct: 117 DYPTLPAMP-ALTGSVLSDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIH 229 D +RLAV E+ + + ++ +VP K + + + L+ + + ++LS E I Sbjct: 174 DRYRLAVRELTWTPEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIG 232 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + RL++GEFP Y+ ++P S + V +AV RVS+++ R ++LS Sbjct: 233 FEGGGRRTTTRLLEGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVA-ERNTPLRLS 291 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +SD+L + + +A+E ++ + I FN +LL+ ++ I SD + Sbjct: 292 FTSDRLVLEAGTGEEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIESDV-----AHLQ 346 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I GK D D Y++MP+RI Sbjct: 347 FTTSTKPAIITGKPADDGTASD----YRYLIMPVRI 378 >gi|313625801|gb|EFR95417.1| DNA polymerase III, beta subunit [Listeria innocua FSL J1-023] Length = 381 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I D KL Sbjct: 118 LDSMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIK--DNKLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379 >gi|289433375|ref|YP_003463247.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|289169619|emb|CBH26153.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b str. SLCC3954] gi|313640126|gb|EFS04744.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL S4-171] Length = 381 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E KL Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 AVATD HRLA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I + Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290 + L RL++G +P+ +IP EL +N QA+DR S+++ V ++L Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLITL 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ ++P++G E++ + + I FN KY+++ + D++ Sbjct: 296 DNGQVEVSSNSPEVGNVSENVFSQSFTGEEVKISFNGKYMMDALRAFEG-----DDIQIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R KD + N ++ P+R Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379 >gi|113953564|ref|YP_729240.1| DNA polymerase III subunit beta [Synechococcus sp. CC9311] gi|113880915|gb|ABI45873.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9311] Length = 385 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 177/399 (44%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T PV +VLL A+ G L + + I ++ Sbjct: 1 MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASVD G++T+ A LL +IV K + +V ++ ++ ++ P +F Sbjct: 61 ASVDTSGAVTLPARLLGEIVSK-LSSDSPVSLSSDAGADQVELTSSSGSYQMRGMPADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + + L + T FA + +E + L G+ N++ +L A +TDG Sbjct: 120 PELPLVENGTALRVDPASLLKALRATLFASSGDEAKQLLTGVHLRFNQK--RLEAASTDG 177 Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLA+ V+ ++ +P +++ E+ R+++S V + ++ Sbjct: 178 HRLAMLTVEDALQAEISAEESEPDELAVTLPARSLREVERLMASWKGGDPVSLFCERGQV 237 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + ++ R ++G +PNY+ +IP + + ++ A++R+++++ V++ Sbjct: 238 VVLAADQMVTSRTLEGTYPNYRQLIPDGFSRTIDLDRRAFISALERIAVLADQHNNVVRI 297 Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + + ++ D D+G ES+ N + I FN +Y+L+ + + D V Sbjct: 298 ATEPATGLVQISADAQDVGSGSESLPAEINGDAVQIAFNARYVLDGLKAMDC-----DRV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + + D Y++MP++I Sbjct: 353 RLSCNAPTTPAILTPANDD--------PGLTYLVMPVQI 383 >gi|23097457|ref|NP_690923.1| DNA polymerase III subunit beta [Oceanobacillus iheyensis HTE831] gi|22775680|dbj|BAC11958.1| DNA-directed DNA polymerase III beta chain [Oceanobacillus iheyensis HTE831] Length = 378 Score = 309 bits (792), Expect = 5e-82, Method: Composition-based stats. Identities = 94/395 (23%), Positives = 188/395 (47%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T++R ++ + + + I + IP+ + ++ + + + S +I I IP Sbjct: 1 MRFTIQRDKLINGVSNVMKAISARTVIPILTGMKIEVKNHGVTLTGSDSDISIEYYIPIE 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 D G+I + A DIVRKL + + + +++L V I+ G + F L Sbjct: 61 EDGIVHVENIEEGTIILQAKYFPDIVRKLPE-STVDIVVDDQLN--VRITSGKAEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + + SFEL +LK+++++T FA++T E R L G+ + + L Sbjct: 118 QSAEEYPQLPKVQTENSFELPIDLLKSMIKQTVFAVSTMETRPILTGVNLKLVDNS--LS 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA E+ + ++ I+VP K++ E+ +IL + +V++S++ ++I Sbjct: 176 FTATDSHRLARREIPVSNAPIEISQIVVPGKSLNELNKILGDSEETVEISVTNNQILFRT 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 + L+ RL+DG +P +IP + ++++ L +DR S+++ R VK + Sbjct: 236 KHLNFLSRLLDGNYPETSRLIPEQSKTKIQLKTKELLGTIDRASLLAKEERNNVVKFNAP 295 Query: 292 SDKLC-MTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ ++P++G +E + + I F+ KY+++ + I DEV Sbjct: 296 GNSMIEISSNSPEVGNVVEEITADQMEGEDVKISFSSKYMIDALKAIE-----YDEVQIE 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR DS +++P+R Sbjct: 351 FTGAMRPFIIRPVGDDSI---------LQLILPVR 376 >gi|268315580|ref|YP_003289299.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252] gi|262333114|gb|ACY46911.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252] Length = 379 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 100/392 (25%), Positives = 186/392 (47%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV +D+L+ L ++ K T+P+ +L +A DG L + A+ EI I +P Sbjct: 1 MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60 Query: 61 VD----VCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ G+ + V A L + +R L D E V ++ ++ + F Sbjct: 61 LELQNGKEGARRVAVPARRLLETLRALPDLPVQFSADE---SFNVTLTTDQGHYKMVGFD 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +++P+ E + +S + +++L+ +++T FA++ + +R + GIFF + E+ ++ V Sbjct: 118 GADYPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRV--V 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGH V IVP KA + ++ + D + + + E + + Sbjct: 176 ATDGH-RLVRLRLRELVSETPLEFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGP 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + RLID +PNY+ VIP ND+ L V+ AV RV + +S V+L+L D Sbjct: 235 VRIISRLIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDH 294 Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + ++ + +A E + Y+ PM I FN YL E++ N+ S DEVV S Sbjct: 295 VEIAAEDIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDS-----DEVVLEFSSP 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N + + ++ + ++MP+ + Sbjct: 350 NRAGVVMPHEQ------AEGEDLLMLIMPVML 375 >gi|284041473|ref|YP_003391813.1| DNA polymerase III subunit beta [Conexibacter woesei DSM 14684] gi|283945694|gb|ADB48438.1| DNA polymerase III, beta subunit [Conexibacter woesei DSM 14684] Length = 369 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 189/386 (48%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ R ++L L R+ + I V L A G +E++A+ E+ + +PA Sbjct: 1 MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGLRVPLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS+ + A L+ D+VR L + E E+ G++ F++++ +FP Sbjct: 61 IEREGSVVLPARLIVDVVRSLSGPTATLELRPAEQDVELV--AGNAQFHIRTLRAEDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + V R + + +E R L GI +E +L++ VATD +R Sbjct: 119 FPEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRM--VATDSYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 L+V E + + VP +A+ E+ R++ D + V + ++++ I + +S Sbjct: 177 LSVKETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FPNY+ ++P S + EL + + + V R+S+++ + ++LS + +L ++ Sbjct: 237 RLIEGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLA-QKNAPLRLSFAPGELTVSA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 PD+G+A ES+ V + P +I FN +L + + + V +V+ +L S I Sbjct: 296 QTPDIGEARESLPVAFQGEPFEIGFNPDFLRDGL-----ESVGSGDVMLKLISPLRPGLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y++MP+R+ Sbjct: 351 QSAED---------GGFLYLIMPIRL 367 >gi|118615921|ref|YP_904253.1| DNA polymerase III subunit beta [Mycobacterium ulcerans Agy99] gi|118568031|gb|ABL02782.1| DNA polymerase III (beta chain) DnaN [Mycobacterium ulcerans Agy99] Length = 402 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 168/401 (41%), Gaps = 31/401 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + + + + + + +PV VLL +D L I E+ +PA + Sbjct: 14 KFRLVPESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G++ VS LL DI R L + G V ++ G++ F L + ++P+ Sbjct: 74 ASPGTVLVSGRLLSDITRALPKKPVDFYVD----GNRVALTCGNARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + ++ L GI I+ E K+ ATD RL Sbjct: 130 PTLPED-TGTLPAELFSEAIGQVAITAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233 AV E+ A + +++VP K +GE + + S V++SL + + ++ + Sbjct: 187 AVRELTWNALSPDIEAAVLVPAKTLGEAAKANTDG-SEVRLSLGAGMGVGKDGLLGISGD 245 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP ++ ++P + + L +A+ V++++ R V++ + Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVA-DRGAQVRMEFADG 304 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E + V + P+ I FN YL++ + ++ S + V F + Sbjct: 305 MLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGFTTP 359 Query: 354 NSSVFIRGK---------DKDSKNNKDNKVNAFYVLMPMRI 385 +R D + Y+LMP+R+ Sbjct: 360 GKPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRL 400 >gi|308066840|ref|YP_003868445.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681] gi|305856119|gb|ADM67907.1| DNA polymerase III, beta chain [Paenibacillus polymyxa E681] Length = 380 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 190/396 (47%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKI++ ++ + E + H + I + TIP+ + L N + + AS +I I IP Sbjct: 1 MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + A +I++KL K+ + IS G + + Sbjct: 61 DGDQTVVQIEQPGSVVLPAKFFVEIIKKLPSQEIHMEVKD---QFQTFISSGATEIQIVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + +LKN++++T F+++T E L G+ +++ E +LK Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + + ++++ K + E+ RI+ ++ V + ++++++ Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 ++ + R++DG +P+ +IP S EL V+ +L +++DR ++S + VK+ S Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ + ++GK E + V + P+ I FN KY+L+++ I S +++ Sbjct: 296 LENGGLEISSSSSELGKVREEVTVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D NA Y+++P R Sbjct: 351 AFTGIMSPIILKPAD---------SSNALYIILPYR 377 >gi|160932423|ref|ZP_02079813.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753] gi|156868382|gb|EDO61754.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753] Length = 440 Score = 309 bits (791), Expect = 6e-82, Method: Composition-based stats. Identities = 110/389 (28%), Positives = 193/389 (49%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MKI ++S ++E + + R + K+T+ +LL+ +G L++ E+ IT I A Sbjct: 68 MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELGITTVIEA 127 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G + +SA L DIVR+L D E I+ G S F + P SE+P Sbjct: 128 QVDEPGEVVLSARLFGDIVRRLPDETVTILVDE---KMITQITCGPSEFSIVGIPSSEYP 184 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S +L S +LK+++ +T FA+A + + G F+I ++L V+ DG+ Sbjct: 185 ELPSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRL--VSVDGY 242 Query: 180 RLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA+ +++ + +VP K + E++++L +D +V++ + I IE S+ Sbjct: 243 RLAMRTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSV 302 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLC 296 RL++GEF +Y+ IP E+ VN NL +V+RVS++ + R++ V+ S D Sbjct: 303 ISRLLEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEI 362 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +GKA + ++ ++I FN +YLL+ + N + DEV +L S Sbjct: 363 KISCVTSIGKANDELSAQITGPEVEIGFNNRYLLDALRNADT-----DEVKVQLTGPVSP 417 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I DS ++++P+R+ Sbjct: 418 MKIVPTQGDS---------FLFLVLPVRL 437 >gi|112789950|gb|ABI21619.1| Smu19B [uncultured organism] Length = 357 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 15/367 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D+ + + + + + +PV +LL+ + G L + E+ + Sbjct: 1 MKFRVARDDLADAVAWVAKSLPSRPPVPVLGGILLEVDGGTLTVSGFDYEVSTRAELSVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + VS LL +I R L G+ V+I G + F L + P ++P Sbjct: 61 AEDDGRVLVSGRLLSEITRALPAKPVDFAVD----GSRVSIVGGSARFTLPTMPVDDYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++++ V ++ A ++ L GI I + KL ATD R Sbjct: 117 LPEMPAGSGTVESAAL-AEAVAQSVVAAGRDDTLPMLTGIRVEIEGD--KLTLAATDRFR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV E+ M +++VP + + + + L +SV V+L + + L +V Sbjct: 174 LAVRELGWTPDTPDMSTAVLVPARTLSDAAKTLGGA-ASVIVALGDGLLGLQAGGRRTTV 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL+D EF Y++++P + + V + L +A+ RV++++ R +++ ++ L +T Sbjct: 233 RLLDVEFVKYRSLLPSEHTTTVDVPVSELVEAIRRVALVT-DRGHHLRMQVTDGLLTLTA 291 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D GKA E + V + + I FN YL++ + + S + V + + + Sbjct: 292 GGDDEGKAEEELPVEADGAELLIAFNPGYLIDGLGVLHS-----ERVRMAFTTPSRPALL 346 Query: 360 RGKDKDS 366 D D Sbjct: 347 LPMDSDG 353 >gi|146300470|ref|YP_001195061.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101] gi|14531036|gb|AAK63183.1| DNA polymerase III beta subunit DnaN [Flavobacterium johnsoniae UW101] gi|146154888|gb|ABQ05742.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101] Length = 372 Score = 309 bits (791), Expect = 7e-82, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 183/386 (47%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L + AS E ++ + Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLSID 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A LL +I++ + ++N V IS + L EFP Sbjct: 61 STSKGSVAVPAKLLLEILKTFPEQPLTFTVEDN---NTVEISSNSGKYALAYAAGEEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + + VL V +T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 SVNLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + +++ I+P+K + + IL S D+ VK+ ++S + ++ + R Sbjct: 176 L-VKYARADVKASQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ + +V RV+I S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLLIDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y + I FN ++L+E++ N+ SD ++ + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIM-----LEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + ++MP+ + Sbjct: 350 TPAD-----GLEEGETVTMLVMPVML 370 >gi|22299892|ref|NP_683139.1| DNA polymerase III subunit beta [Thermosynechococcus elongatus BP-1] gi|22296077|dbj|BAC09901.1| DNA polymerase III beta subunit [Thermosynechococcus elongatus BP-1] Length = 370 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 194/388 (50%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S + L R+ + P+ ++LLQA G L + + + + A+ Sbjct: 1 MKVVCSQSVLSSKLAPLSRVAPSNPSHPILANILLQAEGGRLGLSVFDLSLGMQIWLDAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G+ITVSA L ++V ++ + I E+ T V + +G F +Q EFP+ Sbjct: 61 VKVPGAITVSAKLFSEMVSRMPN-RDIEITAED---TRVILDYGSGFFEIQGMSAEEFPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V L + L+ ++ + FA +T+E + L+G H+ E +L ATDGHR Sbjct: 117 LPTLEDVTPITLTAEALRRGLQGSLFAASTDENKQILSG--LHVTFERDRLEFAATDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-LSMSV 239 LAV + + I +P K++ ++ R+++ +D V + +++ +I + ++ Sbjct: 175 LAVTVTEQPVPAEPLSPITIPAKSLKDLERLMAKQDGMVALRCDPTQVVFDIGNDARITS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297 RL++G++PNY+ +IP + +++ V + L A++RV+I+++ + VK+++ + +L + Sbjct: 235 RLLEGQYPNYRQLIPKTFARQVTVERSALADALERVAILAAQKNNVVKINIDTEAQELKL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + P +G E++ + M + FN KYLLE + ++S + V +L+ Sbjct: 295 SAEAPQLGSGEENLPAQISGESMVVAFNVKYLLEGLKVMNSAD-----VQLQLNGETQPA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y++MP++I Sbjct: 350 ILLP---------LGEAQMKYLVMPIQI 368 >gi|289642467|ref|ZP_06474612.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca glomerata] gi|289507726|gb|EFD28680.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca glomerata] Length = 385 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 166/395 (42%), Gaps = 22/395 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER D + + R + + T + V ++L A L + A E+ + Sbjct: 1 MKFRVERDDFTDAVAWTARTLPTRATSQLQVLAGLMLDATGPSLSVAAFDYEVAAQSGVD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+++ G VS LL +I R L + G V ++ G++ F L + ++ Sbjct: 61 ATIEQEGRALVSGKLLAEITRALPSAPVDLYTD----GARVVLTCGNARFTLPTMSVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + V + A ++ L G+ I+ + L L ATD Sbjct: 117 PALPPMP-AVTGHIEGAAFAGAVSQVAVAAGKDDTLPVLTGVRVEIDGDVLTL--AATDR 173 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV ++ + +VP + + E + LS V +SL E+ Sbjct: 174 YRLAVRKLRWRPASETADGVAMVPARTLSETAKSLSGSGVEVAISLGSGPSGEALAGFAG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + RL+DG FP YQ ++P S+ +V +AV RV+++++ R V+LS S Sbjct: 234 GGRQTTTRLVDGSFPPYQRLLPDSSPLTAQVEIAPFAEAVKRVALVAA-RTAPVQLSFSD 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D+L + +A E++ + Y+ + I FN YLL+ + + SD V Sbjct: 293 DQLVLEAGAGGEAQAQETLTIGYDGPSLSIAFNPSYLLDGLGALESDVVHVGFASADDPD 352 Query: 353 --SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + GK D D Y+LMP+R+ Sbjct: 353 EASKKPAILTGKAPDDGEVPD----YRYLLMPIRL 383 >gi|108802858|ref|YP_642795.1| DNA polymerase III subunit beta [Rubrobacter xylanophilus DSM 9941] gi|108764101|gb|ABG02983.1| DNA polymerase III, beta subunit [Rubrobacter xylanophilus DSM 9941] Length = 375 Score = 308 bits (790), Expect = 8e-82, Method: Composition-based stats. Identities = 101/387 (26%), Positives = 188/387 (48%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + L R + ++ + V VLL+A +G LE+ A+ E+ I PA Sbjct: 1 MRAVCNTGVLAGKLALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTRSPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + A + DIVR L +G IS + E G V + ++ + ++++ +FP+ Sbjct: 61 VEEAGRLVIPARIFSDIVRSLPEG-MISIEHDVESGAAV-LRSRENEYRIRAYAAEDFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF ++ L V++ + + +E R L GI I+ ED +L V TD +R Sbjct: 119 LPEFSEEGSFRVSGEALVETVQKVSSSYSRDETRPVLTGIL--ISFEDSRLRMVTTDSYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239 L++ E ++ I+P +A+ E+ RI S D ++V LSE++ + + + Sbjct: 177 LSIKETELATTFEGKREAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGT 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ--AVKLSLSSDKLCM 297 +LI G FP Y+ ++P + ++E+ VN + ++ RV++ + + V L S + + Sbjct: 237 KLIAGNFPEYRRLLPAAFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEV 296 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V + ++G+A E + +E I FN YLL+ I + + ++VVF+ + Sbjct: 297 VVRSGEVGEAHERIPAS-SEDDFTISFNPGYLLDGISAVDT-----EKVVFKFNEPLKPG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I N + + + Y++MPMR Sbjct: 351 LIVP-------NGEEEPDFRYLIMPMR 370 >gi|260887487|ref|ZP_05898750.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] gi|330837869|ref|YP_004412449.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] gi|260862774|gb|EEX77274.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] gi|329745633|gb|AEB98989.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185] Length = 370 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 107/386 (27%), Positives = 204/386 (52%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++++ + + + I K P+ + ++A + +E+ A+ E+ I IP+ Sbjct: 1 MKFTCHKNELAQAIQLVSKAIANKPQTPILSGIYMEATNNQVELHATDNEMGIISIIPSE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + +S + +++R+L + +E ++ I SNF L S P ++FP+ Sbjct: 61 VEQEGKLVLSGRYMQEVIRRLPGETVTISQEIDENISK--IQSAASNFTLLSMPANDFPT 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K E F++ +VL++++++T FA +T+E R G IN E LK+ AT+ HR Sbjct: 119 VKRLEDGIRFKIQDNVLRDIIKKTVFACSTDEARPVFTGCQMEINGETLKM--AATNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 L+V + +++A ++ II+P K + E+LR L+S V V S ++ E++ + Sbjct: 177 LSVKK-EVIANLSGDLHIIIPAKILNELLRALNSDMPVEVDVCCSSNQASFQFENVVLMS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 RLI+G+FPNY +VIP + + ++ + AVDRVS++S S ++L +++ ++ Sbjct: 236 RLIEGQFPNYDSVIPKNFATTVTLDTEDFLAAVDRVSLISRSADYNIIRLEFGGNQVHIS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD+GKA E + + ++I FN KY+ +++ NI S F L+ S + Sbjct: 296 SNSPDIGKADEIVAASIDGPAVNIAFNAKYVTDVLKNIDSKNF-----RFLLNQSLQAAA 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 +R +D + Y++ P+R Sbjct: 351 VREEDNPT---------FVYIVTPVR 367 >gi|20806544|ref|NP_621715.1| DNA polymerase III subunit beta [Thermoanaerobacter tengcongensis MB4] gi|20514981|gb|AAM23319.1| DNA polymerase III beta subunit [Thermoanaerobacter tengcongensis MB4] Length = 370 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 191/389 (49%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ +LE + A R + + T+P+ + + A ++++ + EI I IPA Sbjct: 1 MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V A + D+V+KL +G +++ VN+ GD NF + EFP Sbjct: 61 IEEEGETVVPARIFSDLVKKLPEGEV---EVKSDSQNTVNVVSGDINFSIAGSNPEEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF+L S+LK+L+++T F ++ E+ R L G+ F + +LK AVA DG R Sbjct: 118 IPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGFR 175 Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + A+ S+++P + EI RIL +++ V + + +++ I++ Sbjct: 176 MAIYSYKSEKSFFDEEAEKYSLVIPGDTIDEISRILEDEETEVIIYHTSNQVLFQIDNTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ +N ++++R S+++ + VK + + Sbjct: 236 VISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEIGDSFIV 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + E + V ++I FN +YLL+ + I+ ++EV +S + Sbjct: 296 ISSSSEKG-SMSEKLEVEVKGMLLEIAFNSRYLLDALKAIN-----EEEVNLYFINSINP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 350 LIIKPV---------GEKEYLYMILPVKL 369 >gi|297200941|ref|ZP_06918338.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] gi|197716888|gb|EDY60922.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] Length = 376 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 167/390 (42%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + PV +LL+A +G L + + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G + G S F L + P E+P+ Sbjct: 61 VEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + A ++ L G+ I + + L +TD +R Sbjct: 117 LPQMP-SATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235 AV E + + ++ +VP K + + + L+S DS + E I Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGDSVILALSGSGAGEGLIGFEGAGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G+ P Y+++ P + + +AV RV++++ R V+LS L Sbjct: 234 RTTTRLLEGDLPKYRSLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + D +A+E ++ + + I FN +LL+ + I S +S Sbjct: 293 ILEAGSSDDAQAVERVDAHLEGDDVSIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + GK + + Y++MP+R+ Sbjct: 348 PALLSGK---PALDAEADEAYKYLIMPVRL 374 >gi|94967033|ref|YP_589081.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis Ellin345] gi|94549083|gb|ABF39007.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis Ellin345] Length = 371 Score = 308 bits (790), Expect = 9e-82, Method: Composition-based stats. Identities = 118/387 (30%), Positives = 193/387 (49%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV + D+L+ L ++ERK TIP+ + L +A L I A+ ++ + A Sbjct: 1 MEITVSKFDLLKELTATQGVVERKTTIPILSNFLFEAVGDKLNITATDLDLSLRTACVTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T+ A LYD V+ L DG EN VNI G SN + S FPS Sbjct: 61 VKKEGSCTIPARKLYDYVKLLPDGDITIKLLENH---WVNIRSGRSNTKMVGMARSNFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ ++ L+ ++ +T FA++ EE RY LNG + E L V+TDGHR Sbjct: 118 LPVFPTTGMVKIPAAALRTMIGKTIFAISNEESRYTLNGALMVLKPES--LIMVSTDGHR 175 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMS 238 LA E +I+ +VP+KA+ E+ +L S + ++ + ES + I ++ Sbjct: 176 LAHIERQGGKFEISGEMKTLVPKKAMSELYSLLQSTETEDIEFAKDESTLFFRIGGRLLT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R + G+FPNY+ V+P NDK + + A+ RV+ + R QA+K+ L D+L ++ Sbjct: 236 SRQLTGQFPNYEAVLPKDNDKSVTIRTDEFMAAILRVAQFADERSQAIKVRLEKDELRIS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G++ +S+ Y + I FN +YL+E + + DEV ++ S+ Sbjct: 296 SSSTETGESEDSIVTAYTGEVVTIGFNSQYLIEFLKAAGA-----DEVRLEFKNAQSAGQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R + ++ YV+MPMRI Sbjct: 351 LRPE------ATSDEFKYRYVVMPMRI 371 >gi|300853234|ref|YP_003778218.1| DNA polymerase III subunit beta [Clostridium ljungdahlii DSM 13528] gi|300433349|gb|ADK13116.1| DNA polymerase III, beta chain [Clostridium ljungdahlii DSM 13528] Length = 367 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++++ E + A + I K+++P+ +L+ +++ S ++ I I A Sbjct: 1 MNFICTKTELQEAISIAQKAITGKSSMPILNGLLITTCKNQIKLTGSDIDLSIETKINAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ V + L +I+RKL + EN + I S F L +FP Sbjct: 61 IKEEGSVVVDSRLFGEIIRKLPNDNINISTTEN---NSIEIICQKSKFNLIHMNAEDFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + +LK++++ T FA A +E R L GI F I ++ KL VA DG+R Sbjct: 118 IPNINENIIFLIPQKILKDMIKSTIFAAAQDETRPILTGILFEIKDK--KLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + + + ++P K + E+ +IL D +V ++ + + I N+++ + R Sbjct: 176 LALKSEYLNTE--NIINAVIPEKTLSEVSKILEDNDKNVNITFTPNHILFNLDNTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299 L++GEF Y ++IP + ++ L ++R S+M+ +KL + + + +T Sbjct: 234 LLEGEFIKYNSIIPDEFNLQVTAKREELLSCIERASLMAKDSNTNLIKLEIEENNMIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E +N+ + I FN KYL++++ + ++E++ + SS S I Sbjct: 294 -NSQLGMVREELNILLQGDTLKIAFNSKYLIDVLKIMD-----EEEIIMKFSSSVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KDKD N Y+++P+R+ Sbjct: 348 KNKDKD---------NCTYLVLPVRL 364 >gi|329312725|gb|AEB87138.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp. aureus T0131] Length = 377 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + L + I + T+P+ + + A + + + S EI I IP Sbjct: 2 MEFTIKRDYFITQLNDTLKAISPRTTLPILTSIKIDAKEHEVILTGSDSEISIEITIPKT 61 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + DI++KL E + I+ G S F L Sbjct: 62 VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + +L+ VLKN++ +T+FA++T E R L G+ + I E + L Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLAV ++ + +++ ++I+P KA+ E+ +I+S + + + + +++ + Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++ RL++G +P+ + P + + +L ++ A+DR S+++ +KLS Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + ++ +P++G E ++ + I FN KY+++ + I +DEV Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ K DS +++P+R Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375 >gi|227533505|ref|ZP_03963554.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] gi|227188834|gb|EEI68901.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp. paracasei ATCC 25302] Length = 434 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 174/395 (44%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A Sbjct: 56 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 115 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F + Sbjct: 116 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 172 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + +++ VL+ L+ +T A++ +E R L G+ I + +L A Sbjct: 173 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 230 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA + + A II+P K++ E+ R+LS +++ ++E+++ Sbjct: 231 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 290 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++S V L++ Sbjct: 291 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 350 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + K + ++PD+G E ++ + ++I FN Y+ + + + D Sbjct: 351 ADQKATIYGNSPDVGNVEEVLSFNKLSGEDLEISFNPDYMKDALQGFGQTAIEVD----- 405 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + K ++ P+R Sbjct: 406 FTAPLRPFTLVPTED--------KERFIQLITPVR 432 >gi|54025936|ref|YP_120178.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152] gi|54017444|dbj|BAD58814.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM 10152] Length = 381 Score = 308 bits (789), Expect = 1e-81, Method: Composition-based stats. Identities = 94/390 (24%), Positives = 165/390 (42%), Gaps = 20/390 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + V R D+ + R + + +PV L+A+D L I E+ I A V Sbjct: 4 RFRVARGDLADAATWVARSLPSRPPVPVLGGAHLRADDDGLTISVFDYEVSAQMRIAAEV 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + VS LL DI + L + F G+ V I+ G + F L + P ++P Sbjct: 64 AHDGEVLVSGKLLADITKALPNKPVDITFD----GSRVLIACGSAKFSLPTMPVEDYPKL 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + S ELA+ + V + A ++ L GI I+ ++ L ATD +RL Sbjct: 120 PDVP-ARSGELAADLFATAVSQVAVAAGRDDTLPMLTGIRVEIDGAEVTL--AATDRYRL 176 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 AV ++ ++VP + + E ++ L S + ++++ +S L + R Sbjct: 177 AVRTLEWSPTDPSVETQVLVPARTLAEAVKALESA-APARLAIDDSMFGLVNARRRTTTR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+D EFP ++ ++P + V +L A+ RV++++ R V+L S D L ++ Sbjct: 236 LLDAEFPKFRQLLPKEHTSVATVFVPDLVDAIKRVALVA-ERGAQVRLEFSEDGLLLSAG 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D G+A E++ + P+ I FN YL++ + + S V + + Sbjct: 295 GDDAGRAEEAVPAEFRGEPLTIAFNPGYLMDGLTALHSTS-----VTLGFTTPTRPAVLV 349 Query: 361 GKDKDSKNNKDNKVNAF-----YVLMPMRI 385 A Y+LMP+RI Sbjct: 350 PSGDVEVKESSGGFAALSGPFVYMLMPVRI 379 >gi|310639473|ref|YP_003944231.1| DNA polymerase iii, beta subunit [Paenibacillus polymyxa SC2] gi|309244423|gb|ADO53990.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa SC2] Length = 380 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 191/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKI++ ++ + E + H + I + TIP+ + L N + + AS +I I IP Sbjct: 1 MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GS+ + A +I++KL K+ + IS G + + Sbjct: 61 DGDQTVVQIEQPGSVVLPAKFFVEIIKKLPSQEIRMEVKD---QFQTFISSGATEIQIVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + +LKN++++T F+++T E L G+ +++ E +LK Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + + ++++ K + E+ RI+ ++ V + ++++++ Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 ++ + R++DG +P+ +IP S EL V+ +L +++DR ++S + VK+ S Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + L ++ + ++GK E +NV + P+ I FN KY+L+++ I S +++ Sbjct: 296 LENGDLEISSSSSELGKVREEVNVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D NA Y+++P R Sbjct: 351 AFTGIMSPIILKPAD---------SSNALYIILPYR 377 >gi|81251069|gb|ABB69873.1| DNA polymerase III beta chain [Nitrosospira sp. GS832] Length = 369 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 122/390 (31%), Positives = 206/390 (52%), Gaps = 26/390 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT ++ Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSVE- 59 Query: 60 SVDVCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ G S+TV A L DI+R L D Q++ ++ G S F LQ+ P Sbjct: 60 DVNPAGEEHSVTVPAKKLQDILRALPDKVQVTLET---GENRLHAKAGKSRFNLQTLPVE 116 Query: 117 EFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +FP E E + LK+++ +AMA ++IRYYLNG+ + + LK+ VA Sbjct: 117 DFPKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLMEDNYLKV--VA 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA A + + A K +I+PRK V E+ R+L+ D V V ++++ ++ Sbjct: 175 TDGHRLAFALMLLAAPQEKKE-VILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNV 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +++DG+FP+Y VIP +K+ +N L Q + R SI+S+ + + V+L L+S L Sbjct: 234 ILVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNL 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +N + +A E + + Y +DI FN YLL+++++++ + V +NS Sbjct: 294 RIVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNC-----ETVRCAFGDANS 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I D + YV+MPMRI Sbjct: 349 SALISIPGND---------DFKYVVMPMRI 369 >gi|312869207|ref|ZP_07729379.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3] gi|311095228|gb|EFQ53500.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3] Length = 380 Score = 307 bits (788), Expect = 1e-81, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 178/396 (44%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T+ R+ + L + R I K TIP+ + + + + + S +I I I AS Sbjct: 1 MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V G+I + A +IV+KL D E G + +I+ G + F + Sbjct: 61 DEDYGLTVKEAGAIVLPARFFSEIVKKLPDKQV---TIEVTNGFQADITSGTAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 S FP E E + L + VLK ++ +T A++ +E R L G+ F + D L A Sbjct: 118 DASNFPHLPEIESDNTITLPTDVLKEVIRQTVIAVSKQESRPILAGVHFTLK--DGLLTA 175 Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + + II+P K++ E+ ++ + VKV +SE+++ Sbjct: 176 VATDSHRLAQRKVALENVDSSINFDIIIPGKSLDELSGMMGDGNEDVKVQVSENQVLFIF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290 + RL++G +P +IP ++D + V ++DR S++S R VKL++ Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLTIQ 295 Query: 291 -SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ ++ ++ D+PD+G E + ++I FN Y+ + + + + Sbjct: 296 PANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYMKDALRSFGQST-----IRI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + N +++ P+R Sbjct: 351 SFTSALRPFTLVPTED--------TENFVHLITPVR 378 >gi|227514120|ref|ZP_03944169.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] gi|227087491|gb|EEI22803.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931] Length = 379 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 81/395 (20%), Positives = 180/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK T+ R+ + L + R + K+TIP+ + L ++ + + S +I I + Sbjct: 1 MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +V+ G+I + A DIV+KL D + G + I G + F + Sbjct: 61 DGQYQLTVEEPGAIVLPARFFSDIVKKLPDQQVTIAVTD---GFQAQIMSGTAEFVINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E SFE+A+ + +++ +T A++ +E R L GI H++ D L A Sbjct: 118 DANNYPHLPEIETAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + + +++P ++ E+ R++ VK+ +++++ Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RL++G +P+ +IP +++ + ++ + A++R S++S R VKL++ Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ ++ D+G E++ ++I FN ++ + + + + ++ Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAK-----IILS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + + ++ P+R Sbjct: 351 FTTALRPFTLVPTEDSDQ--------FVQLITPVR 377 >gi|320109372|ref|YP_004184962.1| DNA polymerase III subunit beta [Terriglobus saanensis SP1PR4] gi|319927893|gb|ADV84968.1| DNA polymerase III, beta subunit [Terriglobus saanensis SP1PR4] Length = 397 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 23/392 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +ITV RS++L L A ++ERK TIP+ + L +A++ L I A+ + + + A V Sbjct: 21 EITVSRSELLRELTAAQSVVERKTTIPILSNFLFEADEDRLTITATDLDQSLRTSCAAKV 80 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+ T+ A LYD ++ L DG +N V I G SN + + FP Sbjct: 81 KKPGACTIPARKLYDYIKLLPDGEISIKLMDNH---WVQIRAGRSNTKMVGMARANFPQV 137 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E S ++A L++++ +T F++++EE RY LNG + E + VATDGHRL Sbjct: 138 AEFPTTGSIKIAVPALRSMIAKTIFSISSEESRYTLNGALLVLKAES--MAMVATDGHRL 195 Query: 182 AV--AEVDIVAQIAKMPSIIVPRKAVGEILRIL------SSKDSSVKVSLSESRIHLNIE 233 A + +A ++ ++PRKA+GE+ +L + ++ V+ + ++ + I Sbjct: 196 AHIERLGENLAGVSGEKKTLIPRKALGELSSLLANSNAATEEEDYVEFADDDTTLFFRIG 255 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ R + G+FPNY+ V+P N+K + V +L A+ RV+ + R AVK+ L + Sbjct: 256 GRVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMGALQRVAQFADERSGAVKIRLEQN 315 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L ++ + D G++ + + YN P+ + FN +YL++ + I + EV + Sbjct: 316 ELRISSSSTDSGESEDIIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKDA 371 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ +R +D + Y+LMPMRI Sbjct: 372 QSAGQMRPED------SNEDQKYRYILMPMRI 397 >gi|295133681|ref|YP_003584357.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87] gi|294981696|gb|ADF52161.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87] Length = 372 Score = 307 bits (788), Expect = 2e-81, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L N+ L + AS E ++ + Sbjct: 1 MKFIVSSSYLLKQLQILGGVINNNNTLPILDNFLFDLNNDELTVSASDLETTMSAKLNVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V A LL D ++ + ++N + +S + L EFP+ Sbjct: 61 SDSEGKIAVPAKLLLDTLKTFPEQPLTFVAEDNHT---IELSSNHGKYALAYADGEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +L + + +T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 PVSLEDPSNTVIEGDILSSAISKTIFASGNDDLRPVMSGVFFQFSTEGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + ++ I+P+K + + IL+ +S V + +ES + ++ R Sbjct: 176 LVKYSRE-DVTASQTAEFIMPKKPLNLLKGILAGSESEVLIEYNESNAKFTFDDTTLICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + +V RVSI S+ V+L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N++S DEV + N + + Sbjct: 295 DVDYSNKAEERLTCGYQGDDMQIGFNSRFLTEMLNNLNS-----DEVQLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPVD-----GLDPGEKITMLVMPVML 370 >gi|284028001|ref|YP_003377932.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836] gi|283807294|gb|ADB29133.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836] Length = 381 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 172/395 (43%), Gaps = 26/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + A R + + ++P+ +L++A +G + + E + +PA Sbjct: 1 MKFRVERDVLAESVAWAARSLPSRPSVPILAGLLVEAEEGQITLSGFDYETSVRVTVPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G +S L+ DI + L + G + ++ G S F LQ+ P E+P+ Sbjct: 61 VADTGKCLISGRLVADISKSLPNQPVDIAVD----GAKAQVTCGSSRFTLQTLPTEEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + S V V + A E+ L G+ I + L +ATD +R Sbjct: 117 LPDLP-AASGTVRSDVFAQAVSQVVTAAGREDTLPVLTGVRVEIEGSTISL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLN----I 232 LA+ E++ Q + ++P + + E + ++ D V ++ + + Sbjct: 174 LAIRELEWNPQSPDASAAALIPARVLSETAKAMTGTDIIVSLAAPGSGDGIVGFEGEVSG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+DGEFP + +IP + +R++ L +AV RV++++ R V+L+ Sbjct: 234 GNRRATTRLLDGEFPKVRGIIPTDSAIATRVRLDTATLVEAVKRVALVA-ERNAPVRLTF 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S D + + + D +A ES+ P+ + FN YLL+ ++ I + Sbjct: 293 SEDSVTLDAGSGDEAQASESIEARVVGEPVTVGFNPTYLLDGLNAIGTPV-----AHLAF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + D YVLMP+R+ Sbjct: 348 TQATKPAELTGVTD---FDGDPIAEFRYVLMPVRL 379 >gi|332968622|gb|EGK07676.1| DNA-directed DNA polymerase III beta subunit [Kingella kingae ATCC 23330] Length = 367 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 108/384 (28%), Positives = 201/384 (52%), Gaps = 21/384 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + +R ++L+ + I+ERK+T+P+ +VLL+++ G + + A+ EI+I S Sbjct: 4 LETQRDNLLKPIQAVTGIVERKHTLPILANVLLESHAGKIRVLATDLEIQIHTQGAESEH 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 +T +A L DI++ L D A + + + + G S F LQ+ P +FP+ Sbjct: 64 GDFRLTTNAKKLQDILKALPDSANVQLDWADH---RLTLKSGKSRFNLQTLPAEDFPTMN 120 Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + F L LK+++ + ++MA ++IR+YLNG+ + L+L VATDGHRL Sbjct: 121 VGDTTTAAFALPQETLKHMISQVQYSMAVQDIRFYLNGLLLQVEGNQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 A A I + K +I+PRK V E ++L+ + + L + ++ L + ++ Sbjct: 179 AFASTTIDTDLPKQ-DVILPRKTVLEWNKLLNQPKENAVIELLDKQVRLRCNDTVVVSKV 237 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 IDG+FP+Y VIP N++ + +N L A++R SI+++ + + V+L LS+ L ++ N Sbjct: 238 IDGKFPDYNRVIPMDNNRIVVLNRLALLGALERSSILANEKFRGVRLQLSAGSLRVSCTN 297 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + +A+E + + Y ++ FN +LL+++ +S D++V ++ S Sbjct: 298 NEQEEAVEELELAYQGESLETSFNISFLLDMLRALS-----DEDVQIAFGTATQSTLFTL 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 ++ N YV MPMR+ Sbjct: 353 PEQP---------NFKYVAMPMRL 367 >gi|320162114|ref|YP_004175339.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1] gi|319995968|dbj|BAJ64739.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1] Length = 378 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 99/391 (25%), Positives = 194/391 (49%), Gaps = 25/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + + LG R + ++T+PV +VLL ++G L + A+ E+ I+ + A Sbjct: 6 MKVTVSQQHLAHGLGLVSRAVAPRSTLPVLGNVLLATDEGRLRLAATNLELGISCWLGAQ 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A L D++ L + ++ N +++ G S+ L+ +EFP Sbjct: 66 IQEEGSITVPARLFADLIGTLPN--EMIHLAVNPRSMALSVKCGSSSTELKGIDAAEFPP 123 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L + K ++++ FA +TEE R L G+ I+ +++ L ATDG R Sbjct: 124 VPAVDSDHGVLLPVADFKEMIQQVAFAASTEEARPVLQGVQMVISGDEISL--AATDGFR 181 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 ++V ++ + +A+ S+I+P +A+ E+ RI + + V ++ +E+L ++ + Sbjct: 182 ISVRQMRLSEPVAQPISVIIPARALQELARIAQEGEVRLIVPPGRGQVVFQMENLQLTSQ 241 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-----SDKL 295 LIDG FP+Y+ ++P S V+ L +AV + I++ + V+L L ++ Sbjct: 242 LIDGNFPDYKVILPRSYKTHTIVSTEALLKAVKQAEIIARMGNGVVRLHLQKFDDRPGQI 301 Query: 296 CMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++ + + G A ES+ + + I FN K+L E ++ I + +V + + + Sbjct: 302 EISAQSEETG-ANESLVDANIEGPTLAIAFNVKFLREALEVIKT-----PNLVLQTNDNR 355 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++ +S +V+MPM + Sbjct: 356 SPARLQPVGDES---------FQHVIMPMHL 377 >gi|227529861|ref|ZP_03959910.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] gi|227350230|gb|EEJ40521.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540] Length = 379 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 177/395 (44%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS + L + R I K TIP+ + + + + + S +I I + AS Sbjct: 1 MKFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVANDSITLTGSNSDITIESVMSAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A +IV+KL D E G + +I+ G + F + Sbjct: 61 NEDYELKIAEPGSIVLPARFFSEIVKKLPDK---HVTIEITSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E + LA+ +LK ++ +T A++ +E R L GI H+ D L A Sbjct: 118 DAENFPHLPEVEANNTVVLANDMLKEVIRQTVIAVSKQESRPILAGI--HVTLHDGLLTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA +V + +I+P K++ E+ ++S D VK+ ++++++ Sbjct: 176 VATDSHRLAQRKVQLDGVGDVNYDVIIPGKSLDELSGMISDVDDDVKMQVTDNQVLFIFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RL++G +P +IP ++D + V+ ++DR S++S R VKL++ Sbjct: 236 NTHFYSRLLEGNYPETSQLIPDTSDTTVEVDAGTFLSSIDRASLLSHESRNYVVKLTIKP 295 Query: 293 DK--LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ D+PD+G E + ++I FN Y+ + + + V Sbjct: 296 GEKLVRISGDSPDIGMVEEDVATSAVEGNDLEISFNPNYMKDALRSFGQST-----VKIS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N +++ P+R Sbjct: 351 FTSPLRPFTLVPTED--------TENFVHLITPVR 377 >gi|125974857|ref|YP_001038767.1| DNA polymerase III subunit beta [Clostridium thermocellum ATCC 27405] gi|125715082|gb|ABN53574.1| DNA polymerase III, beta subunit [Clostridium thermocellum ATCC 27405] Length = 366 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++E + + + K T+ + +LL+A D ++ + E+ I I A Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLIDAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ + DIVR+L D + KEN V I +S+F L+ P FPS Sbjct: 60 ILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +++ +++++ +T FA++TE R L G ++ V+ DG R Sbjct: 117 LPSIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITF--VSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + + + S++VP K + EI +IL D + + S+++I I + + R Sbjct: 175 MALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 L++GE+ NY+++IP + +R+ +L +++R S++ S + VK ++ DK+ +T Sbjct: 234 LLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + V N M++ FN +Y +E + I D+ V +SS I Sbjct: 294 -NTEIGAVREEIRVEVNGSNMEVGFNPRYFIEALRVID-----DELVDIYFNSSVGPCTI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + DS Y+++P+RI Sbjct: 348 RPLEGDS---------FAYMILPVRI 364 >gi|73667428|ref|YP_303444.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake] gi|72394569|gb|AAZ68846.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake] Length = 375 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 119/386 (30%), Positives = 205/386 (53%), Gaps = 20/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 V + +L+ L + ++E++++I V V ++A D + + ++ +I I +I A + Sbjct: 8 NFFVSKDKLLQALSYINSVVEKRHSIVVLSCVRIEAKDHQINLTSTDLDISIIASISAHI 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G + VSA LLYDIV+KL + +I F + + I G + F+L +FP Sbjct: 68 NENGVVVVSAQLLYDIVKKLPNDIEIKFVIGKD--GRLVIECGRTEFFLPVVDIEKFPII 125 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E F L S L NL +T FA++ EE R+ LNG++ H + LC ATDGHRL Sbjct: 126 ENNELQNKFTLQVSELVNLFGKTKFAISVEESRFNLNGVYVHTADN--ILCCAATDGHRL 183 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSV 239 ++A++ + IIVP+K V EIL+I+S S + + VSLS+ +I + + Sbjct: 184 SLAKLSKSQNMLSNFGIIVPKKTVNEILKIVSHGSNNDLISVSLSDRKICFEYQEYILIS 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG FP+Y +IP S++K + + L A+DRVS++ +++ +KL +KL ++ Sbjct: 244 KVIDGTFPDYNAIIPKSHNKSVLIESEVLSNAIDRVSVVVFDKVKVIKLRFVDNKLILSA 303 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D G A E + V Y+ M I N +YL+E + V + + + +SV + Sbjct: 304 ASSDQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCVKGKCILSFYDAGTSVLM 357 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ N + Y++MPMRI Sbjct: 358 QEQE--------NIDDFTYIIMPMRI 375 >gi|18308984|ref|NP_560918.1| DNA polymerase III subunit beta [Clostridium perfringens str. 13] gi|110798947|ref|YP_694477.1| DNA polymerase III subunit beta [Clostridium perfringens ATCC 13124] gi|110803106|ref|YP_697353.1| DNA polymerase III subunit beta [Clostridium perfringens SM101] gi|168207735|ref|ZP_02633740.1| DNA polymerase III, beta subunit [Clostridium perfringens E str. JGS1987] gi|168212005|ref|ZP_02637630.1| DNA polymerase III, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|168215268|ref|ZP_02640893.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str. F4969] gi|168218305|ref|ZP_02643930.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC 8239] gi|169343474|ref|ZP_02864474.1| DNA polymerase III, beta subunit [Clostridium perfringens C str. JGS1495] gi|182627053|ref|ZP_02954778.1| DNA polymerase III, beta subunit [Clostridium perfringens D str. JGS1721] gi|18143659|dbj|BAB79708.1| DNA-directed DNA polymerase III beta chain [Clostridium perfringens str. 13] gi|110673594|gb|ABG82581.1| DNA polymerase III, beta subunit [Clostridium perfringens ATCC 13124] gi|110683607|gb|ABG86977.1| DNA polymerase III, beta subunit [Clostridium perfringens SM101] gi|169298426|gb|EDS80515.1| DNA polymerase III, beta subunit [Clostridium perfringens C str. JGS1495] gi|170660920|gb|EDT13603.1| DNA polymerase III, beta subunit [Clostridium perfringens E str. JGS1987] gi|170710065|gb|EDT22247.1| DNA polymerase III, beta subunit [Clostridium perfringens B str. ATCC 3626] gi|170713330|gb|EDT25512.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str. F4969] gi|177907579|gb|EDT70218.1| DNA polymerase III, beta subunit [Clostridium perfringens D str. JGS1721] gi|182379690|gb|EDT77169.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC 8239] Length = 366 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 188/386 (48%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T +++ + E + A + I K+T+P+ + ++A++ ++ I S ++ I A Sbjct: 1 MIFTCDKNKLQESIAIAQKAITGKSTMPILEGLYIEASENIVTIIGSDKDVSIETKFEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V A + +I+RKL + E + I+ S F L +FPS Sbjct: 61 VTEPGKLVVDAKIFGEIIRKLPNDKIKIETVSEEA---IRITCQKSVFDLLHMNAEDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + +LKN+++ T FA+A +E R L GI F I D KL VA DG+R Sbjct: 118 LPKINENMIFSINQGILKNMIKGTSFAIAQDETRPILQGILFEIK--DSKLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + ++P K + E+ +IL + V ++ + + I N+ + R Sbjct: 176 LAIRTENIDTN--NTINAVIPGKTLNEVAKILEDSEEIVNITFTPNHILFNMGDTKVISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++P + ++ V+ L+ ++R S+M+ VK ++ + + +T Sbjct: 234 LLEGEFIKYDALLPKEHKLQIEVDKQTLQNGIERASLMAKEGNSNLVKFDITDENIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E + + + I FN KYLL+++ N+ +D++ R+ SS S I Sbjct: 294 -NSQLGKVREEVTIKLQGDEIQIAFNSKYLLDVLKNME-----EDKIELRMTSSISPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R K+ D Y+++P+RI Sbjct: 348 RNKNNDLCE---------YLVLPVRI 364 >gi|184154478|ref|YP_001842818.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus fermentum IFO 3956] gi|183225822|dbj|BAG26338.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus fermentum IFO 3956] gi|299782687|gb|ADJ40685.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus fermentum CECT 5716] Length = 379 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 180/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK T+ R+ + L + R + K+TIP+ + L ++ + + S +I I + Sbjct: 1 MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +V+ G+I + A DIV+KL D + G + I G + F + Sbjct: 61 DGQYQLTVEEPGAIVLPARFFSDIVKKLPDQQVTIAVTD---GFQAQIMSGTAEFVINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + SFE+A+ + +++ +T A++ +E R L GI H++ D L A Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + + +++P ++ E+ R++ VK+ +++++ Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RL++G +P+ +IP +++ + ++ + A++R S++S R VKL++ Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ ++ D+G E++ ++I FN ++ + + + + ++ Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAK-----IILS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + + ++ P+R Sbjct: 351 FTTALRPFTLVPTEDSDQ--------FVQLITPVR 377 >gi|145588191|ref|YP_001154788.1| DNA polymerase III subunit beta [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] gi|145046597|gb|ABP33224.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius subsp. asymbioticus QLW-P1DMWA-1] Length = 371 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 111/391 (28%), Positives = 207/391 (52%), Gaps = 26/391 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M++ R +L+ L I+ER++T+P+ ++L + N + ++ EI+IT Sbjct: 1 MQLVNTSRDSLLKPLQVVSGIVERRHTLPILANLLFKKNGEKVSFISTDIEIQITTNANF 60 Query: 60 SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V + TV+A L DI+R L +G K+N + + G S F LQ+ +EF Sbjct: 61 GVGSEDVTTTVAARKLLDILRALPEGEVSLNLKDN----RMVVQSGKSRFSLQTLSATEF 116 Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + E ++ + + L+ + HF+MA ++IRYYLNG+ + ++ + AVATD Sbjct: 117 PVMQSVGEVTAAWSMTQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKE--VVAVATD 174 Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 GHRLA + V++ + + II+PRK + E +L D S+++SL+ +++ + Sbjct: 175 GHRLAFSRVELTEAPSGSGQRQEIIIPRKTILECQHLLEDSDESLEISLTANQVKFSFGD 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + + +L++G+FP++Q VIP + L V L+ A+ R +I+++ + + V+ SLS ++ Sbjct: 235 IELISKLVEGKFPDFQRVIPKGHKNTLVVGRDALQAALQRAAILTTDKFKGVRFSLSPNR 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N + +A E + Y+ ++I FN YLL+++ N+ ++++ L +N Sbjct: 295 ITIQSTNAEQEEAQEEIETEYSGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDAN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS + + N YV+MPMRI Sbjct: 350 SSAVVTLPGSE---------NFKYVVMPMRI 371 >gi|158336234|ref|YP_001517408.1| DNA polymerase III subunit beta [Acaryochloris marina MBIC11017] gi|158306475|gb|ABW28092.1| DNA polymerase III, beta subunit [Acaryochloris marina MBIC11017] Length = 372 Score = 307 bits (787), Expect = 2e-81, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 183/391 (46%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++SD+ L R++ T PV +VLL A L + + I I A Sbjct: 1 MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++T+ A L DIV +L + I ++ T V ++ ++ +Q EFP Sbjct: 61 VEETGALTLPARFLNDIVSRLPN-CDIEVETDD---TAVTLTCDSGHYQMQGLVAEEFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + +L + V ++ T FA +T+E + L G+ + +E TDGHR Sbjct: 117 LPSLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGLHLNTSESG--FEFATTDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI----ESLS 236 LA+A + ++ +P KA+ E+ R+L ++ V + ++ + + Sbjct: 175 LAIANFP-DLVTPEPMTMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTER 233 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDK 294 +S RL++G++P Y ++P ++++ V L +V+R++++++ + ++L + Sbjct: 234 LSCRLLEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQN 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ + P++G E + + +DI FN KYL + + + S EV +++S+ Sbjct: 294 VALSAEAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQ-----EVQLQMNSAT 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y++MP++I Sbjct: 349 MPAVLSP---------LSGRQITYLIMPIQI 370 >gi|296268000|ref|YP_003650632.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833] gi|296090787|gb|ADG86739.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833] Length = 378 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 166/392 (42%), Gaps = 23/392 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59 M ++R + E + R + + ++PV + L+ D L++ E+ + Sbjct: 1 MLFRIDRDQLAEAVAWTARSLPTRPSMPVLAGMRLEVTDDHRLKLSGFDYEVSAEVTLDL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G + VS LL +I R L G + ++ G + F L + P ++P Sbjct: 61 ETGEPGVVLVSGRLLAEITRALPAQPVNFTLD----GAKAVVTCGSTRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + V + V + A+ ++ L G+ I + + L ATD + Sbjct: 117 SLPVMPPAAGRVGS-DVFASAVAQVAVAVGKDDTLPMLTGVRMEIEGDLITL--AATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233 RLAV E+ + ++ ++P + + +I + L + V+++LS E I + Sbjct: 174 RLAVRELKWEPAQPGLQAVAMIPGRTLADIAKALGGTGAEVEIALSSGGTGEGMIGFSSA 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+D EFP Y++++P V + +AV RV++++ R V+L+ Sbjct: 234 GRRTTTRLLDPEFPKYRSLLPTEFSARADVATSAFVEAVKRVALVA-ERNTPVRLTFRGG 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + + D +A+E + V + + I FN++YLL+ + + SD + + Sbjct: 293 EVVLEAGSGDEAQAVEVLPVDFEGDEITIAFNHQYLLDGLAVLDSDV-----ARMQFTTP 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++ + Y++MP+R+ Sbjct: 348 TKPAIITA---GKPAGEEAASDYRYLIMPIRL 376 >gi|261854632|ref|YP_003261915.1| DNA polymerase III subunit beta [Halothiobacillus neapolitanus c2] gi|261835101|gb|ACX94868.1| DNA polymerase III, beta subunit [Halothiobacillus neapolitanus c2] Length = 370 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V+R + +E++ T+ + ++LL+ DG L + A+ EI++ ++ Sbjct: 1 MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVDVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV+A L DIV+ A+I+ + + + I G F L S FP Sbjct: 61 MQAPGATTVNARKLADIVKSASQDAKIALTQTD---GWLEIDIGTGVFRLASIEAGSFPQ 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L L+++T F+MA +++RY+LNG+ + ++ AVATDGH Sbjct: 118 MTIDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPG--QMTAVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 RLA A + +IVPRK V E+L+ L D V ++ +++I L I + Sbjct: 176 RLAYAHLSDERLTENNRQVIVPRKMVSEMLKALDRDSDDEVSLAFRDNQIELLIGENYLI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG++P+Y V+P SN K L V+ T L+Q + R SI+S+ R LS +L + Sbjct: 236 SKLIDGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMIE 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + + E+M+V Y+ + I FN YLL I+ I S +EV L++ SSV Sbjct: 296 SSNAEHESSKETMSVGYDASDLKISFNISYLLNILAVIES-----EEVCMELEAPESSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +++ YVLMPM++ Sbjct: 351 IKPV-------MPGDIDSKYVLMPMKL 370 >gi|86133972|ref|ZP_01052554.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152] gi|85820835|gb|EAQ41982.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152] Length = 372 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 179/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L++ AS E ++ + Sbjct: 1 MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENQLKVSASDLETTMSSVVDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL D ++ D E + IS + + F EFP Sbjct: 61 SDSSGSIAVSARLLLDTLKTFPDQPLTFKT---EGDNTIEISSDQGKYDMAYFGGDEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +++L + +T FA +++R ++G+FF + + L VATD H+ Sbjct: 118 AVSLPSPSKTVVPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + I+P+K + + IL +S V + +++ +++ + R Sbjct: 176 LVKYSRT-DVTADQTAEFIMPKKPLNLLKGILGGSESDVTIEYNDANAKFTFDNIVLVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L V+ + +V RVSI SS ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E ++ Y M I FN ++L E+++N++S +V+ + N + + Sbjct: 295 DLDFSNKADERLSCDYQGDDMQIGFNSRFLSEMLNNLNSSDVL-----IEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPID-----GTDEGEQVTMLVMPVML 370 >gi|298491074|ref|YP_003721251.1| DNA polymerase IF1 subunit beta ['Nostoc azollae' 0708] gi|298232992|gb|ADI64128.1| DNA polymerase III, beta subunit ['Nostoc azollae' 0708] Length = 382 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 184/396 (46%), Gaps = 27/396 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I Sbjct: 1 MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRSTFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE---LGTEVNISHGDSNFYLQSFPE 115 A V G+I + A LL DI +L +G + + G V + + +++ Sbjct: 61 AEVIEGGAIALPAKLLVDITSRLPEGEITLDDESGDNTGEGILVTLKPKSGKYQVRAMGA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E + +L ++ + ++ + FA + +E + L G+ + ++ L A Sbjct: 121 EEFPELPVIESSEAIQLTTAAVIEGLKGSLFATSADETKQVLTGVHLTVKQD--TLEFAA 178 Query: 176 TDGHRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLN 231 TDGHRLAV E + + VP +A+ E+ R+L SS + +V + L ++ + Sbjct: 179 TDGHRLAVLETTNERPIDSNEQLEVTVPARALRELQRMLAHSSLEETVALYLDPGQVVFS 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ R ++G++P Y+ +IP ++++ + ++R+++++ + VK+S+ Sbjct: 239 WQNQRLTSRTLEGQYPAYRQLIPRQFERQVTLERRQFISTLERIAVLADQKNNIVKVSID 298 Query: 292 --SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ + D+G ESM + +DI FN KYL+E + + S E+ Sbjct: 299 NANQEITLSCEAQDVGSGTESMPAKISGEDIDIAFNVKYLMEGVKELPSS-----EIQMH 353 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+ S + V + Y+ MP+++ Sbjct: 354 LNQSLTPVVFTP---------LGGLKMTYLAMPVQL 380 >gi|257871390|ref|ZP_05651043.1| DNA polymerase subunit III [Enterococcus gallinarum EG2] gi|257805554|gb|EEV34376.1| DNA polymerase subunit III [Enterococcus gallinarum EG2] Length = 376 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 188/393 (47%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ R++ ++ L R I K TIP+ V L D L + S +I I + Sbjct: 1 MKVTLNRTEFMQELQTVQRAISSKTTIPILTGVKLVLTDKGLTLTGSNADISIETFLSVE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +I+R+L D EN +V I+ G +NF + Sbjct: 61 KEKVQMKIEQTGAIVLQARFFSEIIRRLPDNTVTLEVIEN---NQVAITSGKANFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E E+ + +L +V T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADSYPHLPVVESQDRIEVPAHILNKIVNETVFAVSQHESRPILTGVHFVL--ENKKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + A +I++P K++ E+ R L+ ++ ++++S+ ++++ Sbjct: 176 VATDSHRLSQRVIPLESGEAN-FNIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTN 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + L A++R S++S R V+LS++ Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLSAIERASLLSHEGRNNIVRLSINE 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK E ++ + P++I FN Y+ + D + R Sbjct: 295 DSVILYGNSPEIGKVEEDLSYEQVSGEPLEISFNPDYMKAALRAFG-----DTSITIRFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + + + ++ P+R Sbjct: 350 SAIRPFTLEPTES--------QGSFIQLITPVR 374 >gi|86143001|ref|ZP_01061423.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217] gi|85830446|gb|EAQ48905.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217] Length = 372 Score = 307 bits (786), Expect = 2e-81, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 180/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + +L++ AS E + + Sbjct: 1 MKFIVSSSYLLKQLQVLGGVISNSNTLPILDNFLFELEENVLKVSASDLETTMIATLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+I V A LL D ++ + +N + IS + L EFP+ Sbjct: 61 SEDSGNIAVPARLLLDTLKTFPEQPLTFVAGDN---NTIEISSNHGKYALAYASGEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + VL V T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AVELDDPSKVTIPAGVLATAVSNTIFATGNDDLRPVMSGVFFQFDTEGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L Q + I+P+K + + IL+S D + V ++S + +++ + R Sbjct: 176 LVKYGRT-DVQANQTAEFIMPKKPLNLLKGILASSDDDINVEYNDSNAKFSFDNVQLLCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLIIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L+E+++N+++++ V + N + + Sbjct: 295 DVDYSNKAEERLTCDYQGDDMQIGFNSRFLVEMLNNLNAND-----VSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPVD-----GLDEGEKVTMLVMPVML 370 >gi|301065127|ref|YP_003787150.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str. Zhang] gi|300437534|gb|ADK17300.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str. Zhang] Length = 379 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 174/395 (44%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F + Sbjct: 61 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + +++ V++ L+ +T A++ +E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADAALSVSADVVRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA + + A II+P K++ E+ R+LS +++ ++E+++ Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++S V L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + K + ++PD+G E ++ + ++I FN Y+ + + + D Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGEDLEISFNPDYMKDALQGFGQTAIEVD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + K ++ P+R Sbjct: 351 FTAPLRPFTLVPTED--------KERFIQLITPVR 377 >gi|116493576|ref|YP_805310.1| DNA polymerase sliding clamp subunit [Lactobacillus casei ATCC 334] gi|191636826|ref|YP_001985992.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei BL23] gi|239630806|ref|ZP_04673837.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|116103726|gb|ABJ68868.1| DNA polymerase III, beta subunit [Lactobacillus casei ATCC 334] gi|190711128|emb|CAQ65134.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei BL23] gi|239527089|gb|EEQ66090.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei 8700:2] gi|327380863|gb|AEA52339.1| DNA-directed DNA polymerase [Lactobacillus casei LC2W] gi|327384029|gb|AEA55503.1| DNA-directed DNA polymerase [Lactobacillus casei BD-II] Length = 379 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 174/395 (44%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F + Sbjct: 61 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + +++ VL+ L+ +T A++ +E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA + + A II+P K++ E+ R+LS +++ ++E+++ Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++S V L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + K + ++PD+G E ++ + ++I FN Y+ + + + D Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGEDLEISFNPDYMKDALQGFGQTAIEVD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + K ++ P+R Sbjct: 351 FTAPLRPFTLVPTED--------KERFIQLITPVR 377 >gi|1321905|emb|CAA63258.1| dnaN [Mycobacterium tuberculosis H37Rv] Length = 399 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 34/400 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + R + + + + + +PV VLL +D L I E+ + A + Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GS+ VS LL DI R L + + G V ++ G++ F L + P ++P+ Sbjct: 75 SPGSVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + + + + A ++ L GI L ATD RLA Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVE----SLVRRGCATDS-RLA 184 Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234 V E++ A + +++VP K + E + S V++SL + + ++ Sbjct: 185 VRELEWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 243 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+D EFP ++ ++P + ++ L +A+ V++++ R V++ + Sbjct: 244 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 302 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + ++ D+G+A E + V Y P+ I FN YL + + ++ S + V F ++ Sbjct: 303 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 357 Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385 +R D + + Y+LMP+R+ Sbjct: 358 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 397 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 11/155 (7%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +F L + V + L+G+ ++ L + D A A+ Sbjct: 11 TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244 V A+I S++V + + +I R L +K V V +R+ L + S+ + Sbjct: 69 V--GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 ++P +P ++ + +A+ +V+I + Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAA 155 >gi|88802627|ref|ZP_01118154.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P] gi|88781485|gb|EAR12663.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P] Length = 372 Score = 307 bits (786), Expect = 3e-81, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 178/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + ++ L+I AS E ++ + Sbjct: 1 MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENNLKISASDLETTMSSVVTVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL D ++ D E + IS + + F EFP Sbjct: 61 SDSTGSIAVSARLLLDTLKTFPDQPLTFKT---EGANTIEISSDQGKYDMAYFGGDEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +++L + +T FA +++R ++G+FF + + L VATD H+ Sbjct: 118 ALSLPSPSKTVIPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + I+P+K + + IL DS V + +++ +++ + R Sbjct: 176 LVKYSRT-DVTADQTAEFIMPKKPLNLLKGILGGSDSDVTIEYNDANAKFTFDNIVLVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L V+ + +V RVSI SS ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E ++ Y M I FN ++L E++ N+SS EV+ + N + + Sbjct: 295 DLDFANKADERLSCDYQGDDMQIGFNSRFLSEMLSNLSST-----EVLIEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPID-----GTDEGEQVTMLVMPVML 370 >gi|81427618|ref|YP_394615.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei subsp. sakei 23K] gi|78609257|emb|CAI54304.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei subsp. sakei 23K] Length = 379 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 179/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R+ ++ L R I K TIP+ + L + L + S +I I + AS Sbjct: 1 MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ G I + A +IV+KL + N + I G S F + Sbjct: 61 DEKNQLVVEEVGEIVLPARFFSEIVKKLPEDQMRIAVGNN---FQTTIRSGKSEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E +F +++ VLK L+ +T A++ +E R L G+ + + ++ A Sbjct: 118 DANSYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGVHLVLA--NGEMLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA ++ + +I+P K++ E+ R L+ V++ ++E+++ Sbjct: 176 VATDSHRLAQRKLPVALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL-- 290 +L+ RL++G +P+ +IP S+ ++ N L A++R S++S R V+L+L Sbjct: 236 NLAFYSRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDT 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ + ++PD+G E++ ++I FN Y+ + + + +V Sbjct: 296 EANTAIIYGNSPDVGNVEEALQFENLTGESLEISFNPDYMKDALRSFGQTT-----IVIN 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + + + ++ P+R Sbjct: 351 FTAALRPFTLVPSED--------QEHYIQLITPVR 377 >gi|303240058|ref|ZP_07326579.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2] gi|302592327|gb|EFL62054.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2] Length = 367 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 193/386 (50%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++E + + + K+T+P+ +LL+A+ ++ + EI I + A Sbjct: 1 MKVICSKEHLIEGINIVQKAVSTKSTLPILEGILLEASSD-FKLTGNDLEIGIECYVQAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ + DIVR+L D + N + V I +S+F L+ P +P+ Sbjct: 60 IQTQGSIVLNSKMFGDIVRRLPDSEVLIEVLPN---SSVIIECENSHFELKGMPSDNYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F + +++++ +T FA++ +E R L G E ++ V+ DG R Sbjct: 117 LPSIKKENAFIIKQKTVRDMIRQTLFAVSIDENRPILTGSLLECKENNVTF--VSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I + K ++++P K + EI++IL D + + ++++I +I + R Sbjct: 175 LALRKCIIENE-NKSFNVVIPGKTLNEIVKILQPIDEEISIYSTQNQILFDIGKCKVVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 L++GE+ NY ++IP + ++RV ++ +++R S++ + + VK ++ +K+ ++ Sbjct: 234 LLEGEYLNYNSIIPKDFETKVRVKTKDILSSLERASLITAEEKKYPVKFNVMDEKIVISS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + V + +DI FN KY +E + I D+EV SS I Sbjct: 294 -NTEIGAVREEVRVDISGNRLDIGFNPKYFIEALKVIE-----DEEVDIYFTSSIGPCTI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R K Y+++P+RI Sbjct: 348 RPI---------GKQEYAYMILPVRI 364 >gi|159902541|ref|YP_001549885.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9211] gi|159887717|gb|ABX07931.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9211] Length = 397 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 94/399 (23%), Positives = 184/399 (46%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV ++LL A+ G L + + I ++ Sbjct: 13 MKLVCSQSELNSALQLVSRAVASRPTHPVLANILLTADAGTGRLSLTGFDLNLGIQTSLT 72 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+V G+ T+ A L +IV KL + I+ + ELG +VN++ + ++ +F Sbjct: 73 ASVEVSGATTLPAKLFGEIVSKLSSDSPINLVSD-ELGEKVNLTSKSGTYQMRGLNADDF 131 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + S ++ + N ++ T FA +++E + L G+ + L A ATDG Sbjct: 132 PELPLVQTGASLQINPLIFANALKSTLFASSSDESKQILTGVHLIFDGN--ILQAAATDG 189 Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228 HRLAV ++ + +P K++ EI R + + + + + ++ Sbjct: 190 HRLAVLNLEDAINLNSSTNLNTNDKIEVTLPAKSLREIERFIGNYKNEEKISLFYDSGQV 249 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + ++ R+++G++PNY +IP S L + A++R+++++ +K+ Sbjct: 250 VFTALNQVVTTRILEGDYPNYNQLIPESFSNILEFDRKPFISALERIAVLADQHNNVIKI 309 Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S D + +T D D+G +ES+ V +N I FN +YLLE + +D++ Sbjct: 310 SKEPSSDLVKITADAQDVGSGVESIPVKFNGDNFQIAFNVRYLLEGLRVFE-----EDKI 364 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + + + D + Y++MP++I Sbjct: 365 CLRCNLPTTPAILSSIDD--------QNTFIYLVMPIQI 395 >gi|163788818|ref|ZP_02183263.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1] gi|159876055|gb|EDP70114.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1] Length = 372 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 179/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + + L I AS E ++ I Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELSQSKLTISASDLETTMSSTIDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI + A LL D ++ + +EN V IS + L +EFP+ Sbjct: 61 SDSEGSIALPARLLLDTLKTFPEQPLTFVVEEN---NTVEISSNHGKYALAYADGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + +L + +T FA +++R ++G+FF ++++L VATD H+ Sbjct: 118 AVSIEDASKTTITGDILATAISKTIFAAGNDDLRPVMSGVFFQFSQDNLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L D + I+P+K + + IL+ D V V +ES E+ + R Sbjct: 176 LVKYTRD-DVSATETAEFIMPKKPLNLLKGILAGSDDGVLVEYNESNAKFTFENSVLICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ T +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLVIDRTQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+I+N++S D V + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMINNLNS-----DNVQLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + ++MP+ + Sbjct: 350 TPID-----GLDEGEHVTMLVMPVML 370 >gi|81251085|gb|ABB69885.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS18] Length = 369 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 125/389 (32%), Positives = 204/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQD 60 Query: 60 SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 SVD S+TV+A L DI+R L D AQ+ + G S F LQ+ P + Sbjct: 61 SVDNDEEHSVTVAAKKLQDILRALPDKAQVVLEM---GENRLLAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + LK+L+ +AMA ++IRYYLNG + ED L VAT Sbjct: 118 FPKFPESKEAQGKVTVQQKELKHLLSMVQYAMAQQDIRYYLNG--LLLLLEDSYLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + A K +I+PRK V E+ ++L+ D + + + ++++ ++ Sbjct: 176 DGHRLAFALMTLEAPQEKKE-VILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVV 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R SI+S+ + + V+L L++D L Sbjct: 235 LVSKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N + +A E + + Y+ +DI FN YLL++++N +S + + +NSS Sbjct: 295 IVCSNSEQEEAQEELELQYDGEALDIGFNITYLLDVLNNTTS-----EAIRCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D N YV+MPMRI Sbjct: 350 ALITIPGND---------NFKYVVMPMRI 369 >gi|256003887|ref|ZP_05428874.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM 2360] gi|281418688|ref|ZP_06249707.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20] gi|255992225|gb|EEU02320.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM 2360] gi|281407772|gb|EFB38031.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20] gi|316939068|gb|ADU73102.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM 1313] Length = 366 Score = 306 bits (785), Expect = 3e-81, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 190/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++E + + + K T+ + +LL+A D ++ + E+ I I A Sbjct: 1 MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLIDAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ + DIVR+L D + KEN V I +S+F L+ P FPS Sbjct: 60 ILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +++ +++++ +T FA++ E R L G ++ V+ DG R Sbjct: 117 LPSIEKENMIKVSQKAIRDMIRQTLFAVSMEGTRPILTGSLIECAGNEITF--VSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + + + S++VP K + EI +IL D + + S+++I I + + R Sbjct: 175 MALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 L++GE+ NY+++IP + +R+ +L +++R S++ S + VK ++ DK+ +T Sbjct: 234 LLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + V N M++ FN +Y +E + I D+ V +SS I Sbjct: 294 -NTEIGAVREEIRVEVNGSNMEVGFNPRYFIEALRVID-----DELVDIYFNSSVGPCTI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + DS Y+++P+RI Sbjct: 348 RPLEGDS---------FAYMILPVRI 364 >gi|289577267|ref|YP_003475894.1| DNA polymerase III subunit beta [Thermoanaerobacter italicus Ab9] gi|289526980|gb|ADD01332.1| DNA polymerase III, beta subunit [Thermoanaerobacter italicus Ab9] Length = 370 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 190/389 (48%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKDQVKFSGTDLDIGIECQIPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V A + ++VRKL +G E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEGDV---KIESDSQNTVNVICDSINFTIAGSDAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+L ++LK+L+++T F +A E+ R L G+ F + ++K AVA DG R Sbjct: 118 IPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGFR 175 Query: 181 LAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + + SI++P K + EI +IL +++ + + + +++ IE+ Sbjct: 176 MAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ V L ++++R S+++ + +K + + Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N + GK +E + V ++I FN +YLL+ + I ++E+ +S + Sbjct: 296 VSS-NSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369 >gi|167036433|ref|YP_001664011.1| DNA polymerase III subunit beta [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|167038677|ref|YP_001661662.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X514] gi|256751454|ref|ZP_05492332.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300913763|ref|ZP_07131080.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561] gi|307723220|ref|YP_003902971.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X513] gi|320114859|ref|YP_004185018.1| DNA polymerase III subunit beta [Thermoanaerobacter brockii subsp. finnii Ako-1] gi|166852917|gb|ABY91326.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X514] gi|166855267|gb|ABY93675.1| DNA polymerase III, beta subunit [Thermoanaerobacter pseudethanolicus ATCC 33223] gi|256749673|gb|EEU62699.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus CCSD1] gi|300890448|gb|EFK85593.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561] gi|307580281|gb|ADN53680.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X513] gi|319927950|gb|ADV78635.1| DNA polymerase III, beta subunit [Thermoanaerobacter brockii subsp. finnii Ako-1] Length = 370 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 96/389 (24%), Positives = 191/389 (49%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A G ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I V A + ++VRKL +G E++ VN+ NF + EFP Sbjct: 61 IEEEGEIVVPAKIFSELVRKLPEGDV---KIESDSQNTVNVVCDSINFTIAGSDAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 SF+L ++LK+L+ +T F +A E+ R L G+ F + + ++K AVA DG R Sbjct: 118 IPLVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVK--AVALDGFR 175 Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + + SI++P K + EI RIL +++ +++ + +++ IE+ Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ V L ++++R S+++ + +K + + Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N + GK IE + V ++I FN +YLL+ + I ++E+ +S + Sbjct: 296 VSS-NSEKGKMIEKIEVDVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369 >gi|260662539|ref|ZP_05863434.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN] gi|260553230|gb|EEX26173.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN] Length = 379 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 80/395 (20%), Positives = 180/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK T+ R+ + L + R + K+TIP+ + L ++ + + S +I I + Sbjct: 1 MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +V+ G+I + A DIV+KL D + G + I G + F + Sbjct: 61 DGQYQLTVEEPGAIVLPARFFSDIVKKLPDQQVTIAVTD---GFQAQIMSGTAEFVINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + SFE+A+ + +++ +T A++ +E R L GI H++ D L A Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + + +++P ++ E+ R++ VK+ +++++ Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RL++G +P+ +IP +++ + ++ + A++R S++S R VKL++ Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 ++ ++ D+G E++ ++I FN ++ + + + + ++ Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAK-----IILS 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + + ++ P+R Sbjct: 351 FTTTLRPFTLVPTEDSDQ--------FVQLITPVR 377 >gi|150025164|ref|YP_001295990.1| DNA polymerase III, beta subunit [Flavobacterium psychrophilum JIP02/86] gi|149771705|emb|CAL43179.1| Probable DNA polymerase III, beta subunit [Flavobacterium psychrophilum JIP02/86] Length = 372 Score = 306 bits (785), Expect = 4e-81, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 181/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + L + AS E ++ ++ Sbjct: 1 MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELKKNELLVSASDLETTMSASLTID 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS+ V A LL +I++ + +EN + IS + L P EFP Sbjct: 61 SDSQGSVAVPAKLLLEILKTFPEQPLTFTVEEN---NTIEISSQSGKYALAYAPGDEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + VL V +T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AVNLEEPSKTIVPAEVLSTAVSKTIFAAGNDDLRPVMSGVFFQFSPEG--LIFVATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +++ I+PRK + + IL++ + V + ++S + ++ ++ R Sbjct: 176 LVKYART-DVKASQVADFIMPRKPLNILKGILATSNEEVTIEYNDSNATFSFDNYILTCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + T +V RV+I S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLMIERTQFLSSVRRVAIFSNKTTHQIRLKIAGTELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++LLE++ N+ SD ++ + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLLEMLGNLQSDMIM-----LEMSMPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPID-----GLDEGETVTMLVMPVML 370 >gi|269954812|ref|YP_003324601.1| DNA polymerase III subunit beta [Xylanimonas cellulosilytica DSM 15894] gi|269303493|gb|ACZ29043.1| DNA polymerase III, beta subunit [Xylanimonas cellulosilytica DSM 15894] Length = 377 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 169/390 (43%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK V+R + + + R + + PV V ++A+ G++ + + E+ IPA Sbjct: 1 MKFRVDRDVLADAVTWTARTLPTRPPAPVLAGVRIEADATGVISLSSFDYEVSARSEIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VS LL DI R L + GT+V ++ G S F L + P ++P Sbjct: 61 EVSEPGTVLVSGRLLADIARALPHKP----VDVSLEGTKVVVTCGASRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + S ++ L V + A + +E L G+ I E ++ ++TD + Sbjct: 117 TLPQMPE-LSGTVSGDALTLAVTQVSVAASRDETLPLLTGVRMEIEGE--RITLLSTDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 RLA+ E+ ++ +V K + ++ + L + V V LS I Sbjct: 174 RLALRELTWTPATPGFSAVALVKAKTLIDVAKSLGAGGGLVNVGLSTGSGLDLIGFEAGG 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +L+DG++P + + P + V L A RVS+++ R ++L+ + + Sbjct: 234 RHTTSQLVDGDYPAVRRLFPDATPIHAVVPTQALIDAARRVSLVA-ERNTPIRLAFTEGQ 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ + + FN ++LL+ + + + D V N Sbjct: 293 VVLDAGQGDDAQASEALEAVLVGEDITVAFNPQFLLDGLTALGT-----DFVRLSFTHPN 347 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G++ + ++ + Y+L+P+R Sbjct: 348 KPVEFTGQES---LDGEDSSDYRYLLVPIR 374 >gi|15893300|ref|NP_346649.1| DNA polymerase III subunit beta [Clostridium acetobutylicum ATCC 824] gi|15022819|gb|AAK77989.1|AE007513_2 DNA polymerase III beta subunit [Clostridium acetobutylicum ATCC 824] gi|325507409|gb|ADZ19045.1| DNA polymerase III subunit beta [Clostridium acetobutylicum EA 2018] Length = 366 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 188/386 (48%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK E++ + E + A + + K+T+PV +L+ + L + S ++ I I Sbjct: 1 MKFICEKNILQEAIITAQKAVTGKSTMPVLQGILMSVQNNELTLIGSDIDLSIETKINVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + A LL +I+RKL + EN V I+ S L ++FPS Sbjct: 61 VLEEGKVVLDARLLSEIIRKLPNSKVEIQTIENNC---VEITCNKSKLTLVYLNPNDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + F++ LK +++ T FA+A +E R L G+ F I D KL VA DG+R Sbjct: 118 LPEIDENSIFKINQKTLKTMIKGTIFAIAQDETRPILTGVLFEIK--DSKLNLVAIDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ I + + + ++P K + E+++IL D V ++ + + I N+ + + R Sbjct: 176 LALRSQYIDNETS--INAVIPGKTLNEVIKILED-DGDVNITFTSNHILFNLGNTKIISR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP + + L ++R S+M+ +KL + D + +T Sbjct: 233 LLEGEFIKYNSIIPEEYNLNIVARKEELLDCIERASLMAKDGNNNLIKLDIEDDVMIITS 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E +N+ P+ I FN KYL++++ ++ +E+V SS S I Sbjct: 293 -NSQLGNVREEINIILQGQPLKIAFNSKYLIDVLKIMN-----QEEIVMNFSSSISPCII 346 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ D ++ Y+++P+R+ Sbjct: 347 KNKEND---------DSTYLILPVRL 363 >gi|260062622|ref|YP_003195702.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501] gi|88784189|gb|EAR15359.1| DNA polymerase III, beta chain [Robiginitalea biformata HTCC2501] Length = 372 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 177/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L N L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVISNSNTLPILDNFLFDLNGTKLTVSASDLETTMSSELEVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I V A LL D ++ + ++N V IS + L +EFP Sbjct: 61 SGDKGTIAVPARLLLDTLKTFPEQPLTFVVEDN---NTVEISSSHGKYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E+ +L +++T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AVELPDPSKTEIMGDILATAIDKTLFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L Q +++ I+P+K + + IL+ + V V+ ++S + + R Sbjct: 176 LVKYRRT-DVQASEVAEFIMPKKPLNLLKGILAGSEDPVTVAYNDSNAKFLFANTVLVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + + L +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLVIQRSQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y + I FN ++L+E++ N+ S DE+ + N + + Sbjct: 295 DVDYSNKAEERLTCSYQGDDLQIGFNSRFLVEMLGNLGS-----DEISLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPAD-----GLDEGEFITMLVMPVML 370 >gi|288554607|ref|YP_003426542.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] gi|288545767|gb|ADC49650.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] Length = 380 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 93/397 (23%), Positives = 182/397 (45%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T++R + + + + + + TIP+ + + A+ + + S ++ I IP Sbjct: 1 MQFTIQRDRFVHDVQNVAKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDVSIETFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ GSI + A +IV+KL G I +++ T I G S F L Sbjct: 61 DAENEIVTIEQEGSIVLQARFFAEIVKKLP-GETIELIVQDQFAT--TIRSGSSVFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F L +LKN++ +T FA++T+E R L G+ E + L Sbjct: 118 LDPEEYPRLPQLEEDLLFRLPQDMLKNMIRQTVFAVSTQETRPVLTGVNLETEEGE--LI 175 Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ + I + ++++P K++ E+ +I+ + + V ++E++I Sbjct: 176 CTATDSHRLAMRKATIERNDEELTFSNVVIPGKSLNELSKIIDDSNELIDVVVTENQILF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288 ++L RL++G++P +N+IP + + Q ++R ++S + + L Sbjct: 236 KFKNLLFFSRLLEGKYPVTKNMIPAQSKTSFTLKTKPFLQTLERALLLSREGKNNVINLK 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + +T P++GK E++ M I FN K +++ + I S +E+ Sbjct: 296 TLDEGLIEITSIQPEVGKVTENIQSEQMQGEDMRISFNGKNIIDALKVIDS-----EEIN 350 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S IR D D + ++ P+R Sbjct: 351 IVFTGAMSPFVIRPTDHD---------HYLHLFSPVR 378 >gi|120436260|ref|YP_861946.1| DNA polymerase III subunit beta [Gramella forsetii KT0803] gi|117578410|emb|CAL66879.1| DNA polymerase III subunit beta [Gramella forsetii KT0803] Length = 372 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 180/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L N+ L + AS E ++ + Sbjct: 1 MKFIVSSNYLLKQLQILGGVINNSNTLPILDNFLFDLNNDELTVSASDLETTMSAKLKVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V A LL D ++ + ++N + +S + L EFP+ Sbjct: 61 SDSEGKIAVPAKLLLDTLKTFPEQPLTFVVEDN---NTIELSSNHGKYALAYADGEEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S + + +L + + +T FA +++R ++G+FF E+ L VATD H+ Sbjct: 118 PVELEDPSSTVVEADILASAISKTIFASGNDDLRPVMSGVFFQFTEDGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + + I+P+K + + IL+ +S V + ++S + + R Sbjct: 176 LVKYSRE-DIKANQAAEFIMPKKPLNLLKGILAGSESEVLIEYNDSNAKFTFDETQLICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + +V RVSI S+ V+L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L+E+++N+++ DEV+ + N + + Sbjct: 295 DVDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLNNLTA-----DEVMLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPID-----GLDPGEKITMLVMPVML 370 >gi|163755511|ref|ZP_02162630.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1] gi|161324424|gb|EDP95754.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1] Length = 372 Score = 306 bits (784), Expect = 4e-81, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 185/386 (47%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L Q N+ L++ AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFQLNENELKVSASDLETTMSSVLTVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I V A LL D ++ + ++N V IS + L +EFP+ Sbjct: 61 SDSTGNIAVPAKLLLDTLKTFPEQPLTFVVEDN---NTVEISSNHGKYALAYADGNEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + + +A VL + +T FA +++R ++G+FF + E+L VATD H+ Sbjct: 118 SVELKEPSATTIAGHVLSTAISKTIFASGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + Q +++ I+P+K + + IL + V + ++S ++ + R Sbjct: 176 LVKYQRT-DLQASQVAEFIMPKKPLNLLKGILGGSEDDVVIEYNDSNAKFTFDNTVLVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L +N +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLEINRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N+ + D+V + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLGA-----DDVSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + + ++MP+ + Sbjct: 350 TPID-----GLEEGEHITMLVMPVML 370 >gi|317123179|ref|YP_004097291.1| DNA polymerase III subunit beta [Intrasporangium calvum DSM 43043] gi|315587267|gb|ADU46564.1| DNA polymerase III, beta subunit [Intrasporangium calvum DSM 43043] Length = 375 Score = 306 bits (784), Expect = 5e-81, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 167/389 (42%), Gaps = 22/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + +PV VLL+A DG L + A E+ +PA Sbjct: 1 MKFRVERDVLAEAVTWVARGVPARPPVPVLAGVLLEAAEDGTLTLSAFDYEVSARITVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + V LL +I R L + GT++N++ G S F L+ P +++P Sbjct: 61 DVAEAGQVLVLGRLLAEISRNLPAKP----IDISTDGTKLNVTCGSSRFSLREMPVADYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S +A V V + A + L G+ + + K+ +ATD + Sbjct: 117 TLPAAPEP-SGTIAGDVFTQAVAQVSIAADRGDTLPILTGVRMEVEGD--KIVLLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIH---LNIESL 235 RLA+ E+ + ++P + + E + L + SV+++L Sbjct: 174 RLAMRELTWSPASPAASHVALIPARQLSETAKALGAS-GSVQIALGGGGDGLIGFEAGQR 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL+DGE+P ++ P S D E + L +AV RV++++ R V L + ++ Sbjct: 233 QATTRLLDGEYPKVTSIFPSSVDTEAVIETAALEEAVKRVALVA-ERNTPVLLKFTDGQV 291 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D +A E++ + + I FN +YLL+ + V + Sbjct: 292 AIEAGTGDDAQASEAVEAVLHGPEIQIAFNPQYLLDGLHA-----VGQPWSRLSFTQPSR 346 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G+ ++ + D + YVLMP+R Sbjct: 347 PAVLTGQ---AEADSDTDASYRYVLMPVR 372 >gi|282898715|ref|ZP_06306703.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii CS-505] gi|281196583|gb|EFA71492.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii CS-505] Length = 382 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 190/396 (47%), Gaps = 27/396 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T P+ +VLLQA+ + + A + I + Sbjct: 1 MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADVNTNQVSLTAFDLSLGIRTSFT 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPE 115 A V G++ + A +L DI +L +G + + TE + + + L+S Sbjct: 61 AEVIEGGAVALPAKILVDITSRLPEGDITLDDQSGDSTTEGINFILKPKNGKYELRSMGA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E ++ ++ L ++ + FA +++E + L G+ + ++ L+ A Sbjct: 121 EEFPELPLIESSNPIQITTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEF--AA 178 Query: 176 TDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLN 231 TDGHRLAV + + + + VP +A+ E+ R+L+ + ++ + L E +I Sbjct: 179 TDGHRLAVLETINERPLENDEQLEVTVPARALRELQRMLNHSASEEAISLCLDEGQIVFA 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ R ++G++P+Y+ +IP +++L + ++R++I++ + VK+S++ Sbjct: 239 WQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNNIVKISMN 298 Query: 292 SD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ ++ + D+G A ESM + +DI FN KYLLE + + S E+ Sbjct: 299 TGEQEITLSCEAQDVGNATESMPAQISGEDIDIAFNVKYLLEGLKELPST-----EIQMH 353 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L+ + + V + Y+ MP+++ Sbjct: 354 LNQNLTPVIFTP---------LGGLKMTYLAMPVQL 380 >gi|220905645|ref|YP_002480956.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7425] gi|219862256|gb|ACL42595.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7425] Length = 374 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 186/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +SD+ L R++ K T PV +VLL+A L + + + IPA Sbjct: 1 MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +V GS T+ A DIV +L + + V ++ G ++ +Q EF + Sbjct: 61 TEVPGSFTLPARFFNDIVSRLPNAPITIAVE----SPTVTLACGAGHYQMQGLEAEEFTA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L SS+L ++ T FA +T+E + L G+ + + L+ ATDGHR Sbjct: 117 LPDLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEF--AATDGHR 174 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----L 235 LAVA P S+ VP KA+ E+ R+L ++ + ++++ + Sbjct: 175 LAVAYGQPEEFSPDTPLSVTVPAKALRELERMLGRTPVALTLRCDQTQVVFEFATEQGMA 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SD 293 +S RL++G +PNY+ ++P ++++ V ++R+++++ + VK+ L + Sbjct: 235 RLSSRLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQ 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L ++ + P G ES+ + +++ FN KYL++ + +++ EV +++++ Sbjct: 295 QLDVSAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTAS-----EVQIQMNAA 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V + + Y++MP+++ Sbjct: 350 TAPVILSP---------LSGTKMTYLIMPIQL 372 >gi|81251073|gb|ABB69876.1| DNA polymerase III beta chain [Nitrosospira sp. NRS527] Length = 369 Score = 306 bits (783), Expect = 5e-81, Method: Composition-based stats. Identities = 121/390 (31%), Positives = 205/390 (52%), Gaps = 26/390 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT ++ Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSVE- 59 Query: 60 SVDVCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ G S+TV A L DI+R L D Q++ ++ G S F LQ+ P Sbjct: 60 DVNPAGEERSVTVPAKKLQDILRALPDKVQVTLET---GENRLHAKAGKSRFNLQTLPVE 116 Query: 117 EFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +FP E E + LK+++ +AMA ++IRYYLNG+ + + LK+ VA Sbjct: 117 DFPKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLMEDNYLKV--VA 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRLA A + + A K +I+PRK V E+ R+L+ D V V ++++ ++ Sbjct: 175 TDGHRLAFALMLLAAPQEKKE-VILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNV 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +++DG+FP+Y VIP +K+ +N L Q + R SI+S+ + + V+L L+S L Sbjct: 234 MLVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNL 293 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +N + +A E + + Y +DI FN YLL+++++++ + V +NS Sbjct: 294 RIVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNC-----ETVRCAFGDANS 348 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I + YV+MPMRI Sbjct: 349 SALISIP---------GNNDFKYVVMPMRI 369 >gi|227511153|ref|ZP_03941202.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227523340|ref|ZP_03953389.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] gi|227085635|gb|EEI20947.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577] gi|227089531|gb|EEI24843.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290] Length = 379 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 97/395 (24%), Positives = 179/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R++ + L R I K TIP+ + LQA L + S +I I I Sbjct: 1 MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V+ G+I + A DIV+KL + EN + I+ G S+F + Sbjct: 61 NPDNLLAVESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E S LA +LK ++ +T A++ +E R L G+ F ++ D A Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + I ++P K++ E+ R++ + +S++E+++ I Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLIELSRMIDDNKEDIILSVTENQVLFTIG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 RL++G +P+ +IP S+D + + L +++R S++S + R VK+++ Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295 Query: 293 D--KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + + ++PD+G E M ++I FN Y+ + + + S + D Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPKSVEGNELEISFNPDYMKDALRSFSQATINLD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 SS + + + ++ P+R Sbjct: 351 FTSSLRPFTLTPTED--------SDSFVQLITPIR 377 >gi|81251081|gb|ABB69882.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS16] Length = 369 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 124/389 (31%), Positives = 203/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQD 60 Query: 60 SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 SVD S+TV+A L DI+R L D AQ+ + G S F LQ+ P + Sbjct: 61 SVDNDEEHSVTVAAKKLQDILRALPDKAQVVLEM---GENRLLAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + LK+L+ +A A ++IRYYLNG + ED L VAT Sbjct: 118 FPKFPESKEAQGKVTVQQKELKHLLSMVQYATAQQDIRYYLNG--LLLLLEDSYLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + A K +I+PRK V E+ ++L+ D + + + ++++ ++ Sbjct: 176 DGHRLAFALMTLEAPQEKKE-VILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVV 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R SI+S+ + + V+L L++D L Sbjct: 235 LVSKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N + +A E + + Y+ +DI FN YLL++++N +S + + +NSS Sbjct: 295 IVCSNSEREEAQEELELQYDGEALDIGFNITYLLDVLNNTTS-----EAIRCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D N YV+MPMRI Sbjct: 350 ALITIPGND---------NFKYVVMPMRI 369 >gi|311748577|ref|ZP_07722362.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1] gi|126577099|gb|EAZ81347.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1] Length = 374 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 187/386 (48%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L ++ +P+ + L + + +L I AS + + I Sbjct: 1 MKFIVSSSALLKQLSAINGVVTTNPVVPILENFLFEIQESVLTITASDLQTSMITEIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I V A +L + ++ L + F + V IS + + L ++FP Sbjct: 61 AKEDGNIAVPARILIETLKNLPEQPVT--FSIDHDTYAVEISSDNGRYRLAGENATDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++++ VL + V T FA +++E+R + G++ +++ + VATDGHR Sbjct: 119 IPTVSNATTVDMSTEVLASAVSNTIFATSSDELRPAMTGVYINLSPTNTTF--VATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + + ++I+PRKA+ + L S++ V V ++S + S+ M R Sbjct: 177 L-VRYRRVDVASSDAANLIIPRKALNLLKSTLPSENVPVSVEFNQSNAYFKFNSIKMICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID FP+Y+NVIP N + ++ L ++ R++I ++ V+L L+ +L ++ + Sbjct: 236 LIDERFPDYENVIPAENPNLMTIDRQELLSSLKRIAIYANKTTHQVRLKLTGSELLISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E ++ ++ ++I FN K+L+E+++N+S EV + + N + I Sbjct: 296 DLDFSNEANERLSCEHDGEDIEIGFNAKFLVEMLNNLSCK-----EVTLKFSAPNRAGLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++D + ++MP+ + Sbjct: 351 LPAEQD------ENEDILMLVMPVML 370 >gi|119509171|ref|ZP_01628322.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414] gi|119466337|gb|EAW47223.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414] Length = 387 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 184/401 (45%), Gaps = 32/401 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R + + T PV +VLLQA+ + + A + I + Sbjct: 1 MKLVCTQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAKTNQVSLTAFDLSLGIRTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQ-------ISFFKENELGTEVNISHGDSNFYLQ 111 A V G+I + A LL DI +L +G + G V ++ ++ ++ Sbjct: 61 AEVLEGGAIALPAKLLVDITSRLPEGEVTLDDESALESETATGEGLIVTLTPKSGHYQVR 120 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 + EFP E +L ++ L + + FA + +E + L G+ + ++ L Sbjct: 121 AMSAEEFPELPIIENAEPIQLTTAALIEGLRGSLFATSGDETKQVLTGVHLTVRQD--TL 178 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLAV E + + VP +A+ E+ R+L D ++ + L + Sbjct: 179 EFAATDGHRLAVLETTNERPLDNSEQLEVTVPARALRELQRMLGHNAASDQAIALYLDQG 238 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ ++ ++ R +DG++P Y+ +IP +++L + L ++R+++++ + V Sbjct: 239 QVVFAWQNQRLTSRTLDGQYPAYRQLIPRQFERQLTIERKQLISTLERIAVLADQKNNIV 298 Query: 287 KLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 K+S++ S ++ ++ + D+G ES+ + ++I FN KYL+E + + S Sbjct: 299 KVSINSASQEITLSCEAQDVGSGRESIPAQISGEDIEIAFNIKYLMEGLKELPSS----- 353 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ L+ + + V + Y+ MP+++ Sbjct: 354 EIQMHLNQALTPVIFTP---------LGGLKMTYLAMPVQL 385 >gi|167748044|ref|ZP_02420171.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662] gi|167652524|gb|EDR96653.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662] Length = 367 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 184/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD++ + + + K T+P+ +L++A+ G + + A+ E+ I I + Sbjct: 1 MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L ++IVRKL D E + + I+ + F++ SEFP Sbjct: 61 ILEQGKIALDAKLFFEIVRKLPDNDV---TIETDSDYKATITCEKACFHIVGQEGSEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S L+ LK ++ +T F+++ E + G F + ED KL V+ DGHR Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFEV--EDKKLNVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ + ++VP K + EI +I+S + V + ++ I + + Sbjct: 176 ISIRNIELK-ESYDSFKVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RL++GE+ ++ + ++ +N +DR S++ + + ++++ + L ++ Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G E++ + + I FN K+L++++ I D+E+ L + + F Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVLRVID-----DEEINIYLVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+ + Y+++P+ Sbjct: 349 I----------KDDSESYIYLILPV 363 >gi|153854254|ref|ZP_01995553.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814] gi|149753029|gb|EDM62960.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814] Length = 452 Score = 306 bits (783), Expect = 6e-81, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 189/385 (49%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 84 MKITCSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEISGD 143 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D +N + I+ + F + P EF Sbjct: 144 IIDRGMIAIDAKIFSEIVRKLPDNEVTIETLDN---LQTVITCEKAKFDIAGKPGDEFAY 200 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S E++ LK ++ +T F+++ E + G F I++ LK+ V+ DGHR Sbjct: 201 LPIIEKEDSIEVSQFTLKEVIRQTIFSISDSESNKLMTGELFDISDNILKV--VSLDGHR 258 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + +A ++VP K + EI +ILS + ++ V +S +++ I ++ + Sbjct: 259 ISIRKVPLKKSVADR-KLVVPGKTLIEISKILSGEAENVVSISYTKNHIVFEFDNTIVVS 317 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R+N L +DR +++ + + +++ + + + Sbjct: 318 RLIEGEYFRIDQMLSNDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMELK 377 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+EV L ++ + F Sbjct: 378 IKSQ-IGSMNEEIMITKEGKDLLIGFNPKFLIDALRVID-----DEEVTIYLMNAKAPCF 431 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ + Y+++P+ Sbjct: 432 I----------KDDEESYIYLILPV 446 >gi|153952672|ref|YP_001393437.1| DNA polymerase III subunit beta [Clostridium kluyveri DSM 555] gi|219853345|ref|YP_002470467.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016] gi|146345553|gb|EDK32089.1| DnaN [Clostridium kluyveri DSM 555] gi|219567069|dbj|BAH05053.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016] Length = 367 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 180/386 (46%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + E + + I K+++PV +LL+A + + + S ++ I I A Sbjct: 1 MKFLCTKNKLQESIFTVQKAITGKSSMPVLNGILLEAYNDTIRLTGSDIDLSIITTIQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI + + + DI+RKL + EN V I S F + +FP Sbjct: 61 VQEEGSIVIDSRIFGDIIRKLPNDNIYISTTEN---NSVEILCQKSKFNIIHMNAEDFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + + LKN+++ T FA A +E R L GI F I + KL VA DG+R Sbjct: 118 IPNINENIFFSIPQNTLKNMIKSTIFATAQDEARPILTGILFEIKNK--KLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + + + ++P K + E+ +IL + +V ++ + + I N+ + + R Sbjct: 176 LALKSEFLDNE--NVINAVIPGKTLNEVSKILDDDNENVNITFTPNHILFNLINTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299 L+ GEF Y ++IP + + + L ++R S+M+ +KL + + + +T Sbjct: 234 LLQGEFIKYNSIIPEEYNLRVTAKKSELLDCIERASLMAKDSNTNLIKLKIEQNNMIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E +N+ + I FN KYL++++ + D+E+V S S I Sbjct: 294 -NSQIGMVREELNILLEGDTLQIAFNSKYLIDVLRIME-----DEEIVMEFSGSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K N Y+++P+R+ Sbjct: 348 KN---------SKKNNCIYLVLPVRL 364 >gi|167766863|ref|ZP_02438916.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1] gi|317499295|ref|ZP_07957568.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] gi|167711411|gb|EDS21990.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1] gi|291558403|emb|CBL37203.1| DNA polymerase III, beta subunit [butyrate-producing bacterium SSC/2] gi|316893464|gb|EFV15673.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA] Length = 367 Score = 305 bits (782), Expect = 6e-81, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 179/385 (46%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD++ + + + T+P+ +L++A+ G +++ A+ E+ I I Sbjct: 1 MKIICTKSDLVHAVSIVSKAVSNNTTLPILKCILIEASTGNIKLTANDMELGIETTIDGQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +IVRKL D E + + I+ + F + EFPS Sbjct: 61 IHQPGKIAIEAKLFSEIVRKLPDNDI---TIETDDQYKATITCEKACFQIMGQEGEEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S L+ LK ++ +T F+++ E + G F + ++ +L V+ DGHR Sbjct: 118 LPEIEKNQSITLSQFSLKEVIRQTIFSISDNENTKLMTGELFEVKDD--QLSVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + EI++I+S + D +V + ++ I ++ + Sbjct: 176 ISIRHIELK-DHYDPFKVVVPGKTLQEIVKIISGEMDENVSIYVTSKHILFEFDNTRVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RL++GE+ ++ + ++ +N +DR S++ + + + ++ L + Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLNCIDRASLLIRESDKKPIIIDIADHSLKLN 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N G E + + + I FN K+L++++ I D+E+ L + + + Sbjct: 295 I-NSFFGSMEEEILIQKEGRDLLIGFNPKFLMDVLRVID-----DEEINIYLVNPKAPCY 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+ Y+++P+ Sbjct: 349 I----------KDDAGTYNYLILPV 363 >gi|71891808|ref|YP_277537.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] gi|71795914|gb|AAZ40665.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia pennsylvanicus str. BPEN] Length = 367 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 116/386 (30%), Positives = 204/386 (52%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R + + L I+ + +P+ HVLL+ ND L I A+ EIEIT + Sbjct: 1 MNFVIDRKLLYQSLQKVVGILSGRPRMPILTHVLLEVNDNCLCITATDLEIEITVRVILQ 60 Query: 61 VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GS+ V ++I R L + ++IS +++ ++ I G S FYL +F +FP Sbjct: 61 DKYPIGSVIVPGRKFFEICRSLSESSKISIVSKDK---KMIICSGCSKFYLSTFSSLDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++ ++ ++LK ++E T F+M +++RY LNGI F E L++ VATDGH Sbjct: 118 KLEKWGNNLKLVISQAILKKMIELTQFSMGHQDVRYCLNGILFETKEHILRI--VATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA E+ + + S I+PRK V EILR+L+ K+ V + + + + + E+ + + Sbjct: 176 RLASCEITMDLLLPNQSS-IIPRKGVIEILRLLNVKEKLVNIQTNSNNLRMETENYTFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LID FPN +V + L V C L+QA+ R +I+++ +++ V+ +L +++L +T Sbjct: 235 KLIDAVFPNCHDVFIKRSKNVLEVECGILKQALKRAAILANEKLRIVRFTLITNQLKITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + + E ++V Y+ + I FN YL++++ + + + F L SSV I Sbjct: 295 HNFEHEASEEILDVLYSGKSIKISFNVDYLIDVLQVMDTQ-----FLRFYLTDEISSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +K A Y++MP+RI Sbjct: 350 ESTEK--------CHGATYIVMPIRI 367 >gi|289705897|ref|ZP_06502276.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58] gi|289557382|gb|EFD50694.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58] Length = 371 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 171/387 (44%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + + + A R + + +PV +L+ A G++ I + E I A Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + VS LL DIVR L AQ++ + G +V ++ S F L + P ++P+ Sbjct: 61 VETAGQVLVSGRLLNDIVRSLP-QAQVTVELD---GGKVLVTCRSSRFALATMPVGDYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + V + A + ++ L + I + + +ATD +R Sbjct: 117 LPELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGD--TMTFLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 LA+ E+ + S+++ + + E+ + L S D + + + + + Sbjct: 174 LAMKEIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 L+DGE+P +++ P S+ + V+ L +A RV++++ R A+++ + ++ + Sbjct: 234 SVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTDGQVTLD 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D A ES+ + + FN YL E + + +V F S+ Sbjct: 293 AGTGDDASANESVPCTLEGEDITVAFNPSYLSEGLAVVD-----QPQVRFAFTSAPKPAL 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G +++ D Y++MP+RI Sbjct: 348 LTGVNQEDGVVSD----YRYLVMPVRI 370 >gi|227891670|ref|ZP_04009475.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC 11741] gi|227866473|gb|EEJ73894.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC 11741] Length = 379 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 179/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +++R+ ++ L R I K TI + + + + L + S +I I I Sbjct: 1 MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G++ + A +IV+KL + + E + I+ G + F + Sbjct: 61 DDNAALQIEQEGAVVLPARFFSEIVKKLPEQ---TMTIEINERFQATITSGSAEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P E + + +LK ++ +T A++ +E R L GI I + +L A Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIK--NGELLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I+P K++ E+ +++S D ++++ +SE++ + Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + S RL++G++P+ + +IP ++ + N L Q+++R S++S R VKL+++ Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++G E ++ ++I FN Y+ + + + E+ Sbjct: 296 SAQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQS-----EITIA 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + K N ++ P+R Sbjct: 351 FTQPLRPFTIVPTED--------KDNFVQLITPVR 377 >gi|332293550|ref|YP_004432159.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5] gi|332171636|gb|AEE20891.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5] Length = 372 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 176/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + + L + AS E +T + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELDGNTLTVSASDLETTMTSKLDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I + A LL D ++ + EN V IS + L +EFP+ Sbjct: 61 SSDNGAIALPARLLLDTLKTFPEQPLTFTQHEN---NTVEISSNHGKYALAYADGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ SVL + T FA +++R ++G+FF + L VATD H+ Sbjct: 118 AVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFGTDGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L ++ I+P+K + + ILS+ D + V +ES + +++ + R Sbjct: 176 LVKYGRT-DVVASQAAEFIMPKKPLNLLKGILSTSDDEIAVEYNESNAKFSFDNVELVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N L ++ +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N+++++ V + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNAND-----VSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPVD-----GLDEGEQVTMLVMPVML 370 >gi|257067225|ref|YP_003153480.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810] gi|256558043|gb|ACU83890.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810] Length = 374 Score = 305 bits (782), Expect = 7e-81, Method: Composition-based stats. Identities = 88/391 (22%), Positives = 168/391 (42%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK ++R + + + A R + + +P+ V + A+ G L++ E+ + A Sbjct: 1 MKFHLDRGVLGDAVSWATRTLPVRPAMPILQGVRIVADAGGELQLSTFDYEVSAQIRLEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G + V +L DIVR L + + GT++ + G + F L + P E+P Sbjct: 61 EVDQPGEVLVQGRMLSDIVRALPNKDVSVALE----GTKLQVRCGSARFALATLPVEEYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 V A+ V + + A + ++ L G+ I+ E + L +ATD + Sbjct: 117 QLPTMPPVAGAV-AADVFSEAIAQVTVAASKDDTLPLLTGVKVEISGETMTL--MATDRY 173 Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 RLA+ E+ + +V + + E+ R L++ V+++LSE I Sbjct: 174 RLALRELTWNPTTPGTELTALVRGRTLHEVARSLATGGG-VEIALSEDDSATLIGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DGE+P + + P ++ V +L AV RVS+++ R V+LS + + Sbjct: 233 RRTTSTLVDGEYPPVRRLFPDTSAITAVVATASLIDAVKRVSLVA-ERNTPVRLSFTEGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E + + + + FN +LL+ + + + + S Sbjct: 292 VALEAGAGDDAQASEVLEAHLEGEDLVVGFNSGFLLDGLGALGT-----EFARLTFTDSI 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+D + Y++MPMRI Sbjct: 347 KPSVMTGQDSLEGAP---DSSYKYLIMPMRI 374 >gi|297543500|ref|YP_003675802.1| DNA polymerase III subunit beta [Thermoanaerobacter mathranii subsp. mathranii str. A3] gi|296841275|gb|ADH59791.1| DNA polymerase III, beta subunit [Thermoanaerobacter mathranii subsp. mathranii str. A3] Length = 370 Score = 305 bits (782), Expect = 8e-81, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 189/389 (48%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKITALKDQVKFSGTDLDIGIECQIPAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V A + ++VRKL + E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEEDV---KIESDSQNTVNVICDSINFTIAGSDAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+L ++LK+L+++T F +A E+ R L G+ F + ++K AVA DG R Sbjct: 118 IPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGFR 175 Query: 181 LAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + + SI++P K + EI +IL +++ + + + +++ IE+ Sbjct: 176 MAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ V L ++++R S+++ + +K + + Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N + GK +E + V ++I FN +YLL+ + I ++E+ +S + Sbjct: 296 VSS-NSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369 >gi|257413824|ref|ZP_04744342.2| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82] gi|257202157|gb|EEV00442.1| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82] Length = 388 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++L + + + + T+ + +L+ A+ +++ A+ E+ I I Sbjct: 19 MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 78 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D E + + I+ + F + +F Sbjct: 79 IAERGVIALDAKIFSEIVRKLPDSDV---TIETDASFKTTITCEKAKFNIVGKSGDDFSY 135 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F I E DLK+ V+ DGHR Sbjct: 136 IPYIERNEPIVMSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGHR 193 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ + ++VP K + E+ +IL + V + L+++ I E+ ++ Sbjct: 194 ISIRNIELKNNYS-HKKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVVS 252 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + ++++N L +DR +++ + + ++++ + + Sbjct: 253 RLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMELK 312 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + I FN K+ ++ + I ++EV + + + F Sbjct: 313 I-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVID-----EEEVTLYMVNPKAPCF 366 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ Y+++P+ Sbjct: 367 I----------KDDEGTFIYLILPV 381 >gi|301300475|ref|ZP_07206674.1| DNA polymerase III, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] gi|300851922|gb|EFK79607.1| DNA polymerase III, beta subunit [Lactobacillus salivarius ACS-116-V-Col5a] Length = 379 Score = 305 bits (781), Expect = 8e-81, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 179/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +++R+ ++ L R I K TI + + + + L + S +I I I Sbjct: 1 MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G++ + A +IV+KL + + E + I+ G + F + Sbjct: 61 DDNAALQIEQEGAVVLPARFFSEIVKKLPEQ---TMTIEINERFQATITSGSAEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P E + + +LK ++ +T A++ +E R L GI I + +L A Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIK--NGELLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I+P K++ E+ +++S D ++++ +SE++ + Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + S RL++G++P+ + +IP ++ + N L Q+++R S++S R VKL+++ Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++G E ++ ++I FN Y+ + + + E+ Sbjct: 296 SVQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQS-----EITIA 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + K N ++ P+R Sbjct: 351 FTQPLRPFTIVPTED--------KDNFVQLITPVR 377 >gi|227508129|ref|ZP_03938178.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] gi|227192358|gb|EEI72425.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp. gravesensis ATCC 27305] Length = 379 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 178/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R++ + L R I K TIP+ + LQA L + S +I I I Sbjct: 1 MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A DIV+KL + EN + I+ G S+F + Sbjct: 61 NPDNLLAIESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E S LA +LK ++ +T A++ +E R L G+ F ++ D A Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +V + I ++P K++ E+ R++ + +S++E++ I Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLVELSRMIDDNKEDIILSVTENQALFTIG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 RL++G +P+ +IP S+D + + L +++R S++S + R VK+++ Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295 Query: 293 D--KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + + ++PD+G E M ++I FN Y+ + + + S + D Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPRSVEGNELEISFNPDYMKDALRSFSQSTINLD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 SS + + + ++ P+R Sbjct: 351 FTSSLRPFTLTPTED--------SDSFVQLITPIR 377 >gi|326789141|ref|YP_004306962.1| DNA polymerase III subunit beta [Clostridium lentocellum DSM 5427] gi|326539905|gb|ADZ81764.1| DNA polymerase III, beta subunit [Clostridium lentocellum DSM 5427] Length = 368 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 184/387 (47%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +L + + K T+P+ +LL+A++ L + + E+ I I A Sbjct: 1 MHIYCRQDLLLNSINTVLKACSTKTTMPILECILLKASNNKLTLVGNNLELGIESTIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + + + +I+R++ +N + + I S F + +FP+ Sbjct: 61 VINEGYIALESKIFSEIIRRMPGEVVEISTDDNFMTS---IISEKSKFQIAGQSGKDFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + LK ++ +T F++A +E R L G I +L + V+ DG+R Sbjct: 118 LPDVEKANICTVNQLALKEMIRQTIFSVAQDETRPILTGEMLQIKNNNLNM--VSVDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 ++ ++ + + ++ +++P + + EI +IL+S++ V V + + ++ + Sbjct: 176 ISYRQLQLSNENGEIE-VVIPGRTLSEINKILTSEEKEDVTVYFGDKHVLFDLGDSKVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RL++GEF Y+ V + ++ V+ N +++R +++S + +++ ++ +K+ +T Sbjct: 235 RLLEGEFLKYEQVFSPDYETKILVDRKNFLMSIERAALISREGKKNPIRVEINGEKMIIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E ++V + I FN KYL++ + I DD V SS + Sbjct: 295 S-NAELGTAREELDVILEGKEITIAFNPKYLIDALKAID-----DDNVCIHFISSLTPCI 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++ + + Y+++P+R+ Sbjct: 349 IQPEEGE---------HYKYLILPIRV 366 >gi|317472419|ref|ZP_07931744.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] gi|316900139|gb|EFV22128.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA] Length = 367 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 183/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD++ + + + K T+P+ +L++A+ G + + A+ E+ I I + Sbjct: 1 MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L ++IVRKL D E + + I+ + F++ SEFP Sbjct: 61 ILEQGKIALDAKLFFEIVRKLPDNDV---TIETDSDYKATITCEKACFHIVGQEGSEFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E S L+ LK ++ +T F+++ E + G F ED KL V+ DGHR Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFE--AEDKKLNVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ + ++VP K + EI +I+S + V + ++ I + + Sbjct: 176 ISIRNIELK-ESYDSFKVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RL++GE+ ++ + ++ +N +DR S++ + + ++++ + L ++ Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + G E++ + + I FN K+L++++ I D+E+ L + + F Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVLRVID-----DEEINIYLVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+ + Y+++P+ Sbjct: 349 I----------KDDSESYIYLILPV 363 >gi|300088050|ref|YP_003758572.1| DNA polymerase III subunit beta [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299527783|gb|ADJ26251.1| DNA polymerase III, beta subunit [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 376 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 179/391 (45%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++ + ++ + L R ++T+P++ +VLL ++G L++ A+ E+ +T + A Sbjct: 1 MRLSCLQENLAKGLNIVGRAAAARSTLPITTNVLLATDEGRLKLSATNLEMAVTCWLGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS TV A L+ + + L N+ + + G + +FP Sbjct: 61 VEEEGSTTVPAKLMTEFIGSLPPEKVDMTLSGNKT---LTLKCGRFEARMTGVDAKDFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ + K V R FA AT+E R L GI + L L A DG R Sbjct: 118 VPRVENGVNAKVDVAEFKKGVARVVFAAATDESRPVLTGIDAEFDGSVLTL--AAADGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMS 238 LAV ++ + +++ I+P K +GE+ R+++ D S+ +++ +S+I ++++ + Sbjct: 176 LAVYKMTLSEPVSQKVKAIIPAKTLGEVSRLITDADESIGITVDTQKSQILFKLKNIELV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK---- 294 +L+ G FP Y +IP S+ + ++ +A I + V+L ++ Sbjct: 236 SQLLQGTFPQYSQIIPQSHSTRVVLDVAQFLRASRAAQIFARDGGGIVRLIMTPGSGKTP 295 Query: 295 --LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L +T + ++G ++ + I FN KYLL+++ + +D+V + Sbjct: 296 GRLSITARSEEIGDDQAELDAAISGDEAKIAFNGKYLLDVLSVL-----TEDQVALEVTG 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +S +R D N YV+MPM Sbjct: 351 PSSPGVLRPVGSD---------NYIYVVMPM 372 >gi|172039682|ref|YP_001799396.1| DNA polymerase III subunit beta [Corynebacterium urealyticum DSM 7109] gi|171850986|emb|CAQ03962.1| DNA polymerase III, beta subunit [Corynebacterium urealyticum DSM 7109] Length = 394 Score = 305 bits (781), Expect = 9e-81, Method: Composition-based stats. Identities = 87/398 (21%), Positives = 170/398 (42%), Gaps = 28/398 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +V + D L R + K T P+ V++ A+D LE+ E+ + A+VD Sbjct: 8 FSVAKDDFASALAWVARALPTKPTQPILRGVMILADDDGLELSGFDREVSTRVRVNANVD 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L DIV L G +I+ G+ V + S F L + ++P Sbjct: 68 EPGRILVAGKLASDIVGALP-GKEITMEY---SGSTVLVRSSSSRFELPAMTIEDYPVLP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + + ++ + + A ++ L GI I E++ L ATD RLA Sbjct: 124 DMP-AVTGTIDPNLFTEAISQVAIAAGKDDTLPMLTGIRMEIEGENVVL--AATDRFRLA 180 Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 V A +++P + + + R L + +++++ + + + + Sbjct: 181 VRSFQWNPASADAKAELLIPARTLADTARTLDHSLNDPIEIAIGSGEDIGADGLLGIVTD 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + RL+D +FP ++ ++P ++ V L A+ RVS+++ R +++ Sbjct: 241 ARRTTTRLLDADFPKFRPLLPARHNAMASVEIAPLLDAIRRVSLVA-ERNSQIRMHFEES 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ D+G+A E +N Y+ P+ I FN YL + + I + + VVF Sbjct: 300 TLTLSAGGSDVGQAEEVLNCAYHGEPLTIAFNPAYLKDGLSAIHT-----ERVVFGFTQP 354 Query: 354 NSSVFIR------GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + ++ D + N Y+LMP+R+ Sbjct: 355 SRPAILIPAPAELPEAEEDGTFPDPETNFKYLLMPVRL 392 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 28/184 (15%), Positives = 71/184 (38%), Gaps = 16/184 (8%) Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E+ SF +A + + A+ T+ + L G+ +++ L+L R Sbjct: 2 EQENVSFSVAKDDFASALAWVARALPTKPTQPILRGVMILADDDGLELSGFD----REVS 57 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LI 242 V + A + + I+V K +I+ L K+ + + S S + + S + + Sbjct: 58 TRVRVNANVDEPGRILVAGKLASDIVGALPGKE--ITMEYSGSTVLVRSSSSRFELPAMT 115 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCM 297 ++P V+P ++ +A+ +V+I + +++ + + + + Sbjct: 116 IEDYP----VLPDMPAVTGTIDPNLFTEAISQVAIAAGKDDTLPMLTGIRMEIEGENVVL 171 Query: 298 TVDN 301 + Sbjct: 172 AATD 175 >gi|86130089|ref|ZP_01048689.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134] gi|85818764|gb|EAQ39923.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134] Length = 372 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 175/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L + AS E +T + Sbjct: 1 MKFIVSSSYLLKQLQVLGGVINNSNTLPILDNFLFELDGNALTVSASDLETTMTSKLDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I + A LL D ++ + EN + IS + L +EFP+ Sbjct: 61 SSDNGAIALPARLLLDTLKTFPEQPLTFTQHEN---NTIEISSNHGKYALAYADGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ SVL + T FA +++R ++G+FF + L VATD H+ Sbjct: 118 AVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFATDGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L ++ I+P+K + + ILS+ D + V +ES +++ + R Sbjct: 176 LVKYGRT-DVVASQAAEFIMPKKPLNLLKGILSTSDDEISVEYNESNAKFTFDNVELVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N L ++ +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N+++++ V + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNAND-----VSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPVD-----GLDEGEQVTMLVMPVML 370 >gi|332521540|ref|ZP_08397994.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4] gi|332042939|gb|EGI79138.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4] Length = 372 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 181/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L ++ L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDIDNNALTVSASDLETTMSSTLDIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS+ + A LL D ++ + +EN V IS + L +EFP Sbjct: 61 SDSKGSVAIPARLLLDTLKTFPEQPLTFTVEEN---NTVEISSNHGKYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ +L + +T FA +++R ++G+FF + ++L VATD H+ Sbjct: 118 AVSLEDPSATTISGDILATAISKTIFAAGNDDLRPVMSGVFFQFSTDNLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +++ I+P+K + + ILSS D V + ++S E+ + R Sbjct: 176 LVKYTRE-DVSASQVAEFIMPKKPLTLLKGILSSSDQDVTIEYNDSNAKFTFENTILICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ T +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSIDRTQFLNSVKRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N+++ + V + N + + Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLNATD-----VQLEMSMPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPID-----GLDEGEYVTMLVMPVML 370 >gi|332709092|ref|ZP_08429061.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L] gi|332352143|gb|EGJ31714.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L] Length = 393 Score = 305 bits (781), Expect = 1e-80, Method: Composition-based stats. Identities = 95/407 (23%), Positives = 190/407 (46%), Gaps = 38/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK+ +SD+ L R++ + T PV +VLL+A+ + + + A + I + Sbjct: 1 MKLVCSQSDLNTNLSLVSRVVPSRPTHPVLGNVLLEADQKNQRVLLTAFDLSVGIQTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK---ENELGTEVNISHGDSNFYLQSFPE 115 A V+ G IT+ A LL DIV +L G + V ++ + ++ Sbjct: 61 ADVETGGEITLPAKLLNDIVSRLPSGEITLEDDGTGTDSDSLIVTLTSATGRYQVRGMSS 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP E + + VLK ++ + FA +++E + L G+ + + KL A Sbjct: 121 EEFPELPEVNTSVAVHIPVEVLKAGLQGSLFATSSDETKQVLTGVHLTVQSD--KLEFAA 178 Query: 176 TDGHRLAVAEVDIVAQIAKMPS-------------IIVPRKAVGEILRILSSKDSS--VK 220 TDGHRLAV E + + + +P +A+ E+ RI+S ++ + Sbjct: 179 TDGHRLAVVETNRTIEESATTEATQELDDHDFPLEFTLPARALRELERIVSKAEAQDIIA 238 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + +I ++ R ++G++P+Y ++P +++L ++ L AV+R+++++ Sbjct: 239 IQFEPGQIVCQGGEQLLTSRTLEGQYPSYHQLLPKHFERQLILDRRQLLSAVERIAVLAD 298 Query: 281 VRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + VK ++ + +L ++V+ D+G ESM V + ++I FN KYL++ + +S+ Sbjct: 299 QKNNIVKFNIDSVNQRLHLSVEAKDLGSGRESMEVEISGDSLEIAFNVKYLIDGLKALST 358 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +++ +NS V + Y++MP++I Sbjct: 359 S-----EIKMQMNEANSPVIFMP---------LGGLKMTYLIMPVQI 391 >gi|328956384|ref|YP_004373770.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4] gi|328672708|gb|AEB28754.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4] Length = 380 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 190/396 (47%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++RS L+ L R I + TIP+ + + AND L + S +I I IP S Sbjct: 1 MKFTIKRSAFLKSLSDVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I + A +IV+KL + + E + I+ ++F + Sbjct: 61 EDDNLLVIEKTGGIVLQARFFSEIVKKLPEE---TMTIEILDHFQALITSATASFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P + SF L ++ K ++ +T A++T E R L G+ I E+ K A Sbjct: 118 DPNNYPHLPIIDTKESFTLPVNLFKQVIGQTVIAISTHESRPILTGVNIVI--ENGKFLA 175 Query: 174 VATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ + + Q +K +II+P K++ E+ R L ++++ ++E+++ Sbjct: 176 VATDSHRLSQRVIPLEMNDEQASKKYNIIIPGKSLIELSRTLDENSDTIEMMITENQVLF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 E++ RL++G +P+ + +IP ++ E+ N ++L +++R S++S + VK++ Sbjct: 236 KSENMYFYSRLLEGYYPDTKRLIPDNSSTEISFNASSLLGSIERASLLSHEGKNNVVKIT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + + ++ ++PD+G E ++ P+++ FN Y+ + + + + Sbjct: 296 INPNLVEISGNSPDVGNVNEELDYQSVEGEPIELSFNPDYMKDALRTFGQTD-----IKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + + D + ++ P+R Sbjct: 351 KFTSPVRPFILVPSENDQ--------DFIQLITPVR 378 >gi|90960992|ref|YP_534908.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118] gi|90820186|gb|ABD98825.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118] Length = 379 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 179/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +++R+ ++ L R I K TI + + + + L + S +I I I Sbjct: 1 MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G++ + A +IV+KL + + E + I+ G + F + Sbjct: 61 DDNAALQIEQEGAVVLPARFFSEIVKKLPEQ---TMTIEINERFQATITSGSAEFTINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+P E + + +LK ++ +T A++ +E R L GI I + +L A Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIK--NGELLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I+P K++ E+ +++S D ++++ +SE++ + Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + S RL++G++P+ + +IP ++ + N L Q+++R S++S R VKL+++ Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ + P++G E ++ ++I FN Y+ + + + E+ Sbjct: 296 SAQSVILSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQS-----EITIA 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + K N ++ P+R Sbjct: 351 FTQPLRPFTIVPTED--------KDNFVQLITPVR 377 >gi|309811337|ref|ZP_07705124.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185] gi|308434644|gb|EFP58489.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185] Length = 378 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 171/389 (43%), Gaps = 23/389 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VER + E + A R + ++ +PV VLL+A+ L + A E+ + A V Sbjct: 4 KLRVERDVLAEAVAWAVRGLSQRPPVPVLAGVLLEASPEGLTLSAFDYEVSAKVTVDADV 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G++ V LL DI + L I E G++V ++ G + F LQS P E+P+ Sbjct: 64 EEAGTVLVLGRLLADITKSLP-HKPIELISE---GSKVQVTCGSAKFSLQSMPTGEYPTL 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + +A V V + A + L G+ ++ KL +ATD +RL Sbjct: 120 PANPDP-TGVIAGDVFTQAVAQVSVAADRGDTLPILTGVRVEVSGN--KLTLLATDRYRL 176 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESL 235 A+ EV A + +VP + + + + L + +V +SLS Sbjct: 177 AMREVMWNAGDEGAEYAALVPARTLDSLAKSLGAA-GNVSLSLSGASTGSGLAGFEAGQR 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M+ RL+DG++P ++ P S D V L +A RVS+++ R V+L + D + Sbjct: 236 RMTTRLLDGDYPKVTSLFPTSVDTTAIVETAQLAEACKRVSLVA-ERNMPVRLRFAEDSV 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + +A E+ + ++I F+ ++LL+ + + + V Sbjct: 295 RIEAGTGEDAQASETFEAKIDGPELEIAFSPQFLLDGLGVVGTKY-----VRLGFTQPTR 349 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G+D+ + D + Y++MP+R Sbjct: 350 PAVLSGQDE---IDGDADDSYRYLIMPVR 375 >gi|257866277|ref|ZP_05645930.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30] gi|257873207|ref|ZP_05652860.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10] gi|257875894|ref|ZP_05655547.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20] gi|325567640|ref|ZP_08144307.1| DNA-directed DNA polymerase III beta subunit [Enterococcus casseliflavus ATCC 12755] gi|257800235|gb|EEV29263.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30] gi|257807371|gb|EEV36193.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10] gi|257810060|gb|EEV38880.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20] gi|325159073|gb|EGC71219.1| DNA-directed DNA polymerase III beta subunit [Enterococcus casseliflavus ATCC 12755] Length = 376 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 191/393 (48%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ R++ ++ L R I K TIP+ V L ++ L + S +I I + Sbjct: 1 MKLTLNRTEFMQELQTVQRAISTKTTIPILTGVKLSLSEKGLTMTGSNADISIETFLSVE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +IVR+L + +N +V I+ G +NF + Sbjct: 61 NEKAQMQIEKTGAIVLQARFFSEIVRRLPESTLTLEVLDN---NQVAITSGKANFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E S E+ + VL +V T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADSYPHLPVVESQDSIEIPAHVLNKVVSETVFAVSQHESRPILTGVHFVL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + + +I++P K++ E+ R L+ ++ ++++S+ ++++ + Sbjct: 176 VATDSHRLSQRVIPLESG-ETAFNIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTK 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + L QA++R S++S R V+L++S Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLQAIERASLLSHEGRNNIVRLAISE 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + + ++P++GK E ++ P++I FN Y+ + D +V R Sbjct: 295 EAVVLYGNSPEIGKVEEDLSFEKVTGDPLEISFNPDYMKAALRAFG-----DTSIVIRFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + K + ++ P+R Sbjct: 350 SAIRPFTLEPTES--------KGSFIQLITPVR 374 >gi|305666627|ref|YP_003862914.1| DNA polymerase III subunit beta [Maribacter sp. HTCC2170] gi|88708898|gb|EAR01133.1| DNA polymerase III, beta chain [Maribacter sp. HTCC2170] Length = 372 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 178/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNKLTVSASDLETTMSSVLDVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I V A LL + ++ + ++N V IS + L +EFP Sbjct: 61 SDNEGTIAVPAKLLLETLKTFPEQPLTFVVEDN---NTVEISSNHGKYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S + +L + +T FA +++R ++G+FF + E+L VATD H+ Sbjct: 118 AVELANPSSTNIMGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +++ I+P+K + + IL+ +S V + ++S ++ + R Sbjct: 176 LVKYQRS-DVTASQVAEFIMPKKPLNLLKGILAGSESEVAIEYNDSNAKFTFDNAELICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSIARNQFLSSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N++S DEV + N + + Sbjct: 295 DIDYSNKAEERLTCSYQGDDMQIGFNSRFLTEMLNNLNS-----DEVALEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D N ++MP+ + Sbjct: 350 TPID-----GLDEGENVTMLVMPVML 370 >gi|317489244|ref|ZP_07947761.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325832265|ref|ZP_08165264.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1] gi|316911645|gb|EFV33237.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA] gi|325486101|gb|EGC88555.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1] Length = 366 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 183/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +S++ L + I ++T+P+ + L A+D L ++A+ E+ I ++ A Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V L +IV+ L D A +++ I+ ++F +++ +FP Sbjct: 61 IEETGKAVVPGKLFSEIVKNLPDAAVHVAAEDDSA----VITCDTASFSIKTLDAEDFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + ++V+R ++ +E R L G+ I ED L VATD +R Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ A+ ++ + EI + S+D +K++L+E++I + R Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMT 298 ++G FPNY+ ++P S + ++ +L V R S++ V+ ++ S + ++ Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFDINMASQTVQLS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D+G A E+++ ++I FNY Y+L+ + ++++ D V + SS Sbjct: 293 AVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVNT-----DNVFLEVQSSMKPGI 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D N Y++MP+RI Sbjct: 348 FKA---------DEGENFLYLVMPVRI 365 >gi|257789781|ref|YP_003180387.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243] gi|257473678|gb|ACV53998.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243] Length = 366 Score = 304 bits (780), Expect = 1e-80, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 184/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +S++ L + I ++T+P+ + L A+D L ++A+ E+ I ++ A Sbjct: 1 MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V L +IV+ L D A +++ I+ ++F +++ +FP Sbjct: 61 IEETGKAVVPGKLFSEIVKNLPDAAVHVAAEDDSA----VITCDTASFSIKTLDAEDFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + ++V+R ++ +E R L G+ I ED L VATD +R Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E ++ A+ ++ + EI + S+D +K++L+E++I + R Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMT 298 ++G FPNY+ ++P S + ++ +L V R S++ V+ +++ S + ++ Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFAINMASQTVQLS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D+G A E+++ ++I FNY Y+L+ + ++S+ D V + SS Sbjct: 293 AVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVST-----DNVFLEVQSSMKPGI 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D N Y++MP+RI Sbjct: 348 FKA---------DEGENFLYLVMPVRI 365 >gi|259502129|ref|ZP_05745031.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri DSM 16041] gi|259169942|gb|EEW54437.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri DSM 16041] Length = 380 Score = 304 bits (779), Expect = 2e-80, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 178/396 (44%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T+ R+ + L + R I K TIP+ + + + + + S +I I I A+ Sbjct: 1 MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAN 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V G+I + A +IV+KL D E G + I+ G + F + Sbjct: 61 NEDYGLTVKEAGAIVLPARFFSEIVKKLPDKQV---TIEVTNGFQAEITSGTAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 S FP E E + LA+ VLK ++ +T A++ +E R L G+ F + D L A Sbjct: 118 DASNFPHLPEIESDNTITLATDVLKEVIRQTVIAVSKQESRPILAGVHFTLK--DGLLTA 175 Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + + II+P K++ E+ ++S VKV +SE+++ Sbjct: 176 VATDSHRLAQRKVALENVDNSISFDIIIPGKSLDELSGMMSDDSEDVKVQVSENQVLFIF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290 + RL++G +P +IP ++D + V ++DR S++S R VKL++ Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLTIQ 295 Query: 291 -SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ ++ ++ D+PD+G E + ++I FN Y+ + + + + Sbjct: 296 PANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYMKDALRSFGQST-----IRI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + N +++ P+R Sbjct: 351 SFTSALRPFTLVPTED--------TENFVHLITPVR 378 >gi|15612565|ref|NP_240868.1| DNA polymerase III subunit beta [Bacillus halodurans C-125] gi|13959350|sp|Q9RCA1|DPO3B_BACHD RecName: Full=DNA polymerase III subunit beta gi|5672648|dbj|BAA82686.1| 58%-identity [Bacillus halodurans] gi|10172614|dbj|BAB03721.1| DNA polymerase III (beta subunit) [Bacillus halodurans C-125] Length = 380 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 90/397 (22%), Positives = 182/397 (45%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M ++R ++ + H + + + TIP+ + + A+ + + S +I I IP Sbjct: 1 MHFVIDRDIFVQNVNHVSKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDISIETFIPLE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A + +IV+KL + +++ + T I G S F L Sbjct: 61 EGDRQNVEVKQEGSIVLQAKVFAEIVKKLPEQEIEIHVQDSFVTT---IRSGSSVFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P E + F L +LK+++ +T FA++T+E R L G+ F I ED L Sbjct: 118 LDPDEYPRLPVLEEDHVFRLPQKILKDIIRQTVFAVSTQETRPVLTGVNFEI--EDGILT 175 Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ +V + + ++++P K++ E+ +IL + + + ++E++ Sbjct: 176 CTATDSHRLAMRKVPVEKNDDELQFSNVVIPGKSLNELSKILDENEELLDIVVTENQTLF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288 ++++ RL++G++P +N+IP V+ Q ++R ++S + Q + L Sbjct: 236 KLKNMLFFSRLLEGKYPVTKNMIPKEAKTSFAVHTKAFLQTLERALLLSREGKNQVINLK 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + +T P++GK E++ + I FN K +++ + + S + + Sbjct: 296 TLGDGVVEVTAITPEIGKVTENVATQGLEGEELRISFNGKNVIDALKVVDS-----ESIH 350 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + D D + ++ P+R Sbjct: 351 IAFTGAMSPFVLSPTDHDQ---------SLHLFSPVR 378 >gi|262277741|ref|ZP_06055534.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114] gi|262224844|gb|EEY75303.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114] Length = 369 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 204/385 (52%), Gaps = 17/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R +L+ L H ++E+KNT+P+ +VL++A+DG L++ A+ +I IT + Sbjct: 1 MEFKIDRDVLLKSLAHVQGVVEKKNTLPILGNVLIEAHDGFLKLTATDLDIIITEKLTCQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS T +A ++YDIVRKL+ G+ + + + + G S+F L EFP Sbjct: 61 TIKEGSTTTTAQVIYDIVRKLKTGSSLHLSL--KENNRLKLISGKSDFNLTCISPDEFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ E+ S ++ +T F+++ +E R+YLNG++ + + KL AVATDGHR Sbjct: 119 LEDNMDEQYLEIPSFEFLKIINKTKFSISNDETRHYLNGVYLDKKDGENKLIAVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + +I S+I+P+K V E+L I+ ++K+ ++S+I + + + + Sbjct: 179 LSKSATEIKG-ADNFQSVILPKKTVFELLTIIDEDSINLKILSTKSKIKFLYKDIVLISK 237 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +IDG+FP+Y+ VIP + N A+DR+ +SS R +K+SL + ++ Sbjct: 238 VIDGKFPDYEKVIPKDERIAAKSNVEEFISALDRLKSLSSDRKGVIKISLDKGLMKFLIN 297 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + G IE + Y ++I FN YL+++ + + S + +V L + S + ++ Sbjct: 298 DAISGDGIEEVQTQYQGEHLEIGFNSTYLIDVANVLESKD-----IVLMLKDATSPIQVK 352 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y++MPMR+ Sbjct: 353 DESDPL---------STYIVMPMRV 368 >gi|269793360|ref|YP_003312815.1| DNA polymerase III subunit beta [Sanguibacter keddieii DSM 10542] gi|269095545|gb|ACZ19981.1| DNA polymerase III, beta subunit [Sanguibacter keddieii DSM 10542] Length = 376 Score = 304 bits (778), Expect = 2e-80, Method: Composition-based stats. Identities = 89/390 (22%), Positives = 169/390 (43%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + PV V ++A+ +G L + + E+ IPA Sbjct: 1 MKFRVERDVLAEAVTWTARTLPTRPPAPVLAGVRIEASAEGTLGLSSFDYEVSARSEIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I VS LL +I R L + F E GT+V + G S F L + P ++P Sbjct: 61 EVSEPGVILVSGRLLAEISRALP-AKPVDFTVE---GTKVTVVCGASRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + S + L + V + A + ++ L G+ I E ++ +ATD + Sbjct: 117 ALPSMPEI-SGTVQGDELTHAVAQVTVAASRDDTLPLLTGVRVEIEGE--RITMLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 RLA+ E+ + ++ +V + + ++ + L V V+LS + Sbjct: 174 RLALREMTWKPASPDISTVALVRARTLSDVAKSLGGS-GEVNVALSTGTGVDLVGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P+ + + P V L A RV++++ R +++S S + Sbjct: 233 RHTTSLLVDGDYPHVRRLFPDETPIHAVVPTQPLIDAAKRVALVA-ERNTPIRMSFSEGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ + + FN ++LL+ + + + D V N Sbjct: 292 VVLDAGQGDDAQASEALEAVLVGEDISVAFNPQFLLDGLGALGT-----DFVRLSFTHPN 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+D + ++ + Y+L+P+R Sbjct: 347 KPVEFTGQDS---LDGEDSSHYRYLLVPIR 373 >gi|153811987|ref|ZP_01964655.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174] gi|149831886|gb|EDM86972.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174] Length = 371 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 181/387 (46%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++L+ + + + + K T+P+ +L+ A ++ + E+ I + Sbjct: 1 MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + A + Y+I+R+L D N + T I+ + F + +F Sbjct: 61 IEEKGMVALDAKIFYEIIRRLPDNDVTITTDSNFVAT---ITCEKAKFTIPGKAGEDFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK ++ +T F++A E + G F I + LK+ V+ DGHR Sbjct: 118 LPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCLKI--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + + I+VP K + EI +ILS + D V + +++ I + + Sbjct: 176 ISIRKMPLKKEYSDR-KIVVPGKTLSEISKILSGEIDDQVSIYFTKNHILFEFDQTMVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ D ++ VN +DR +++ + + + + + + + Sbjct: 235 RLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLLVREGDKKPIVIEIKDNSMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ MG E +++ + + I FN K+L++ + I D+ + L + + F Sbjct: 295 IDSA-MGSMNEEIDIEKDGKDILIGFNPKFLIDALKVID-----DEVIHMYLMNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D++ N Y+++P+ I Sbjct: 349 IR----------DDEENYTYLILPVNI 365 >gi|331083520|ref|ZP_08332632.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] gi|330404213|gb|EGG83761.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA] Length = 405 Score = 303 bits (777), Expect = 2e-80, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 176/385 (45%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + + + + K T+P+ +L+ A+ ++ ++ E+ I + Sbjct: 36 MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 95 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A + +IVRKL D E T I+ + F + +F Sbjct: 96 VLEKGIIALDAKIFSEIVRKLPDNDVTIETDEKLNAT---ITCEKAKFNIPGKSGEDFSY 152 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A E + G F I E+ L ++ DGHR Sbjct: 153 LPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLRVISLDGHR 210 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + ++VP K + EI +ILS + + V++ LS + I + + Sbjct: 211 ISIRKIGLKENCEDR-KVVVPGKTLNEISKILSGELEDMVEIYLSANHILFEFDDTKVVS 269 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++++N +DR +++ + + +++ + ++ + Sbjct: 270 RLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINIQNGQMELR 329 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ +G E +++ + I FN K+L++ + I D+EV L ++ + F Sbjct: 330 IDSQ-IGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYLMNAKAPCF 383 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D+ Y+++P+ Sbjct: 384 IR----------DDNQQYIYLILPV 398 >gi|157273494|gb|ABV27393.1| DNA polymerase III beta subunit [Candidatus Chloracidobacterium thermophilum] Length = 391 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 108/406 (26%), Positives = 189/406 (46%), Gaps = 38/406 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ------ANDGLLEIKASGPEIEIT 54 M+ +V ++D+L+ L ++E+K TIP+ ++LL A LL + + + + Sbjct: 1 MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + PA++ G+ + A L DIVR L D FK + G +NI+ S F L S Sbjct: 61 TSCPATIRHSGTALLPARRLLDIVRNLPDADI--HFKSDGSGN-MNITCERSRFRLFSPA 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI------NEED 168 +PS E + + +++ ++ R FA + EE RY LNG+ + + Sbjct: 118 PEGYPSLPETP-ALPLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDAS 176 Query: 169 LKLCAVATDGHRLAVAEVD--------IVAQIAK-MPSIIVPRKAVGEILRILSSKD-SS 218 L VATDGHRLA+ E + + K S ++P+K + EI R+ + + Sbjct: 177 GLLRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIARLAADTTATE 236 Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 + + + I S + RL+ G+FPNY+ V+P +N+ + L A RV ++ Sbjct: 237 IAFGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGVV 296 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + AVKL + ++ + +P+ G+A+E+++V Y + I FN YL++ + S Sbjct: 297 ADETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAHS 356 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + F + + +R D D + YV+MPMR Sbjct: 357 TQT-----RFEFKDEITQIQMRPVDGDG-------YDYRYVVMPMR 390 >gi|159035676|ref|YP_001534929.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205] gi|157914511|gb|ABV95938.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205] Length = 377 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 172/392 (43%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV VLL+ +D L++ E+ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPSRPSVPVLAGVLLRVSDANLQVSGFDYEVSSQVTVEVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+ VS LL +I + L +G + + G + F L + P ++P+ Sbjct: 61 GDADGAALVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V + + ++ V + A +E + G+ ++ L +ATD +R Sbjct: 117 LPEMP-VSTGTVDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGG--TLAMLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 LA+ E++ ++ + +VP + + + + L S V ++LS E I + Sbjct: 174 LALREMEWNPDDPEITLNALVPARTLHDTAKALGSLGGQVTMALSQGAAGEGMIGFAGGT 233 Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+DG +P +++ P +++ + +V + L + V RV++++ R V LS S D Sbjct: 234 RRTTSRLLDGANYPPVRSLFPATHNAQAQVPVSALIEVVKRVALVA-ERTTPVLLSFSGD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + +A E+M + P+ + FN +YL++ + N+ + V + Sbjct: 293 GLVVEAGGTEEARASEAMEATFTGDPLTVGFNPQYLIDGLSNMGTQS-----AVLSFVDA 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + Y++MP+R+ Sbjct: 348 FKPAVISPVGEDGEVVP----GYRYLIMPIRV 375 >gi|284988631|ref|YP_003407185.1| DNA polymerase III subunit beta [Geodermatophilus obscurus DSM 43160] gi|284061876|gb|ADB72814.1| DNA polymerase III, beta subunit [Geodermatophilus obscurus DSM 43160] Length = 386 Score = 303 bits (777), Expect = 3e-80, Method: Composition-based stats. Identities = 79/397 (19%), Positives = 155/397 (39%), Gaps = 25/397 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + ++PV +LL+ + L + E+ + Sbjct: 1 MKFRVAREVLADAVAWTARSLPPRPSVPVLAGILLEVDGSQLSVSGFDYEVSARAEVDVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V LL +I R L G ++IS G++ F L + P ++PS Sbjct: 61 ATESGRVLVPGRLLAEITRALPP----HPVDLTAEGPRLSISCGNARFSLPTLPVEDYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S V V + A ++ L G+ I ++ + L ATD +R Sbjct: 117 LPAMPSSAGVV-DSDVFAEAVGQVAVAAGRDDTLPMLTGVRLEIEDDLVTL--AATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDS----SVKVSLSESRIHLNIESL 235 LAV E +++VP + + + + L+S S E + L+ + Sbjct: 174 LAVREFAWRPDTPGLTTAVLVPARTLADAAKTLTSGPEITLSLSSGSSGEGILGLSGKDR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL+D EF Y+ ++P + + A RV++++ R ++ + ++ Sbjct: 234 QTTTRLLDAEFVKYRAIMPNESASNATLPVGLFTDAAKRVALVA-ERGTPLRCEFTPGQV 292 Query: 296 CMTVDNP-DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + D G+A E +V + P+ I FN +LL+ + + + S Sbjct: 293 TLRAGGTDDEGQAEERCDVEFEGEPLTIGFNPTFLLDGLAAVHT-----PRARMDFTSPL 347 Query: 355 SSVFIRG------KDKDSKNNKDNKVNAFYVLMPMRI 385 + G D+ + + + Y++MP+R+ Sbjct: 348 KPAVLSGVPEPATDDEAASRPAERPGSYRYLIMPVRL 384 >gi|296127871|ref|YP_003635121.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109] gi|296019686|gb|ADG72922.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109] Length = 376 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 169/390 (43%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+ V+R + + + R + + +PV V ++A+ G +++ + E+ +PA Sbjct: 1 MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADTTGTVQLSSFDYEVSARAQLPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VS LL +I R L GT+V ++ G S F L + P ++P Sbjct: 61 DVSEPGTVLVSGRLLAEISRALPAKP----VDVVLDGTKVQVTCGASRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S V + + L + V + A + ++ L G+ I E ++ +ATD + Sbjct: 117 SLPVMPEV-TGTVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGE--RVTLLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 RLA+ E+ + ++ +V + + + + L SV V+LS+ I Sbjct: 174 RLALREMTWKPASPTVEAVALVRARTLSDAAKSLGGA-GSVSVALSDGGGVDLIGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P + + P V+ L +A RV++++ R ++LS S + Sbjct: 233 RQTTSLLVDGDYPPVRRLFPDETPIHAIVHRQALAEAAKRVALVA-ERNTPIRLSFSDGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ + + FN ++L + + + + V N Sbjct: 292 VVLDAGQGDDAQASEALEASLVGDDISVAFNPQFLADGLGALDTT-----FVRMSFTHPN 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G++ D++ + Y+L+P+R Sbjct: 347 KPVEFTGQES---LEGDDRKDYRYLLVPIR 373 >gi|302669376|ref|YP_003829336.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus B316] gi|302393849|gb|ADL32754.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus B316] Length = 369 Score = 303 bits (776), Expect = 3e-80, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 181/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +S+++ L + + K T+ + +L+ A +G+++ A+ E+ I + + Sbjct: 1 MKFVCSKSNLVSGLQIVSKAVPSKTTMSILECILVDATEGIIKFIANDMELGIQTVVEGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + DIVRKL D E++ +V IS + F L +F Sbjct: 61 IVERGYIALDAKIFVDIVRKLPDNDV---TIESDSTNKVTISCERAKFNLIGRKGDDFTY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ L+N++++T F++A + + G F ++ E+LKL V+ DGHR Sbjct: 118 LPSIEKIDGVTVSQYTLRNVIQQTIFSIAENDANKMMAGELFEVDGENLKL--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + +IVP K +GEI +IL + V + ++ + + ++ Sbjct: 176 ISIRKVKLNGSYP-YKKVIVPGKTLGEISKILGDSIEKMVNIYFTDKHVLFEFDKTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + ++ +N +DR +++ + V +S++ K+ + Sbjct: 235 RLIEGEYFSIDQMLSSDYETKISINRKEFLDCIDRATLLVKEGDKKPVIISVTDGKIELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ +G E + + + I FN K+L++ + I D+ V + + + F Sbjct: 295 INSA-IGSMDEEIEIDKQGKDLMIGFNPKFLIDALRVID-----DELVDIYMVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D + Y+++P+ Sbjct: 349 IR----------DKESTYIYLVLPV 363 >gi|222150252|ref|YP_002559405.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus caseolyticus JCSC5402] gi|222119374|dbj|BAH16709.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus caseolyticus JCSC5402] Length = 377 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 88/394 (22%), Positives = 180/394 (45%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++R + L + I + T+PV + L D L + S E+ I IP+ Sbjct: 1 MKFTIQRDYFIAQLNDTLKAISPRTTLPVLTGIKLDVFDNRLVLTGSDSEVSIEITIPSE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GSI + DI++KL E + I+ G S F + Sbjct: 61 LNHEEILTVENKGSIVLPGRFFVDIIKKLPADTV---TIETNDQFQAKITSGQSEFNVSG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P + + L VLKN++++T+FA++T E R L G+ + I D L Sbjct: 118 IDSDQYPLLPQVSEEEAITLPVKVLKNIIKQTNFAVSTSETRPVLTGVNWLIR--DNVLN 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ ++ + ++I+P KA+ E+ +I+ + ++ + + +++ Sbjct: 176 CTATDSHRLALRKLKLEDTNIDEINVIIPGKALSELNKIIGDNEDTIDIFFAANQVLFKF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 ++ RL++G +P+ + P ++ L +N + A+DR S+++ +KLS + Sbjct: 236 GHINFISRLLEGNYPDTSRLFPEISETALSINNGDFFHAIDRASLLAREGGNNVIKLSAT 295 Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + ++ +P++G E++ ++ + I FN KY+++ + I ++V Sbjct: 296 DNTVELSSTSPEIGTVKENVKTSKFDGTGIKISFNSKYMMDALRAID-----VEDVRVEF 350 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + D N +++P+R Sbjct: 351 FGTMRPFILKPDEDD---------NLIQLILPIR 375 >gi|258544742|ref|ZP_05704976.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC 15826] gi|258520013|gb|EEV88872.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC 15826] Length = 371 Score = 303 bits (776), Expect = 4e-80, Method: Composition-based stats. Identities = 109/388 (28%), Positives = 191/388 (49%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAI-P 58 MK ++ + LE L I+ RK T P+ H LLQA D L +K + E+ + + Sbjct: 1 MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLKGTDTEVTLQILLHE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+ITV A L D+VR L A I E E ++ + S F + + P +F Sbjct: 61 LNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKE---QLLVKAAGSLFRIATLPAEDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E + E S L +++++ F+MA+E++RYYLNG++ +I E+ + AV+TDG Sbjct: 118 PALAEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVSTDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ A + ++IVP+K V E++++L V ++L E ++ L + ++ Sbjct: 178 HRLSCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYRLT 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG FPNY+ V+P + + ++ +++ R ++ R ++L+ L + Sbjct: 238 SQLIDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQLA 297 Query: 299 VDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N + A E++ + +++ N YL++ I IS D V + +S Sbjct: 298 ARNLENETADETLEIINPQNLQLEVALNINYLIDAIATISG-----DNVQLHIADGSSPC 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + YV+MPMR+ Sbjct: 353 LITSSDDEGV---------RYVIMPMRL 371 >gi|313904726|ref|ZP_07838100.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6] gi|313470519|gb|EFR65847.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6] Length = 369 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 182/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ D+ +G + + K T+P+ +L+ A+ ++ A+ E+ I +P Sbjct: 1 MKLIFDQQDLANSVGIVMKAVPSKTTMPILQCILIDASFSQIKFTANDMELGIETIVPGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + DIVRKL + EN++ T I+ + F + +F Sbjct: 61 IAEKGKIALDAKIFSDIVRKLPNSRVTIETNENDVTT---ITCEKAKFDIPGKSGDDFAD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ L+ ++ +T F++A E + G F ++ KL VA DGHR Sbjct: 118 LPKIDRNDFISISQLSLREVIRQTIFSIAVNENNKLMTGELFEVSNN--KLKVVALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++I ++ + ++VP K + EI +ILS + D V + S++ + + + Sbjct: 176 IAIRNLEISSECS-PKRVVVPGKTLNEISKILSGEADDLVTIYFSDNYLLFEFDDTVVLS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 RLIDGE+ ++ + ++ VN +DR +++ + V + ++ +++ + Sbjct: 235 RLIDGEYFKIDQMLSSDYETKIEVNRQEFISCIDRATLLVRESDKMPVIIDITDEQMELQ 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ +G E +++ + I FN K+LL+ + I D+ V ++ + F Sbjct: 295 IDSA-IGSMDEEIDIEKTGKDITIGFNPKFLLDALRVID-----DERVSIFFVNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D + N Y+++P+ I Sbjct: 349 IR----------DEEGNYIYLILPVNI 365 >gi|308175816|ref|YP_003915222.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117] gi|307743279|emb|CBT74251.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117] Length = 375 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 185/388 (47%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +VE+ + + + R + ++ PV +L+ +++GL+ ++ EI IPA Sbjct: 1 MKFSVEKDVLADAVSWTARSLAQRPPSPVLAGILITSHEGLVRLEGFDYEISSHIEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI VS LL +I R L + GT+++++ G S F+L + P E+P+ Sbjct: 61 ISEQGSILVSGKLLAEITRSLPNSTVTIETD----GTKISLNCGRSRFHLATMPVDEYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + V + A + ++ L GI I + + +ATD +R Sbjct: 117 LPELPAIAG-TIDGQAFSEAVSQVIVAASKDDTLPVLTGIKVEIENDLITF--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237 LA+ E++ +++ S ++ K + E+ + LS+ +K++L E+ + + Sbjct: 174 LALRELNWSPNKSEISTSFLIKAKTLSEVAKTLSNS-GELKLALGENGEMVGFESSNRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + LI+GE+P +++ P V + L +AV RVS+++ R V+++ + +L + Sbjct: 233 TSLLINGEYPKIRSLFPSDTPIHATVRTSELMEAVRRVSVVA-ERNTPVRMAFTDGQLTL 291 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + +A E++ + + FN +L E +++ ++ D V F S+ Sbjct: 292 DAGTGEDAQAEEAIVAALRGEDIVVAFNPTFLSEGLNSFNT-----DFVRFSFTSAPKPA 346 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ K ++D++ Y++MP+R+ Sbjct: 347 MLTGQ---KKLDEDDQDQYRYLVMPVRL 371 >gi|119714274|ref|YP_921239.1| DNA polymerase III subunit beta [Nocardioides sp. JS614] gi|119534935|gb|ABL79552.1| DNA polymerase III, beta subunit [Nocardioides sp. JS614] Length = 408 Score = 302 bits (775), Expect = 4e-80, Method: Composition-based stats. Identities = 92/394 (23%), Positives = 170/394 (43%), Gaps = 28/394 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K VER + + + A R + + ++PV +L++A+D L + E + A V Sbjct: 31 KFRVERDVLADAVAWAARSLPVRPSVPVLAGLLVEASDDGLVLSTFDYETSARATLTAEV 90 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G VS LL DI R L + + G V+++ G + F LQ+ P ++PS Sbjct: 91 SDEGQALVSGRLLADICRSLP-AKPVEMVLD---GARVSLTCGSARFSLQTMPVDDYPSL 146 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + S + V + A +++ L G+ I+ + L +ATD RL Sbjct: 147 PSMP-AATGTVQSEAFAHAVAQAVTAAGRDDMLPVLTGVRIEIDGSTISL--LATDRFRL 203 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIES- 234 + E++ + + +VP + +G+ + L+ V ++L E I Sbjct: 204 SHRELEWSPRTPDESAAALVPARVLGDTAKSLTGG-GEVTIALATTGSGEGIIGFEGHGP 262 Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + RL+DGEFP +++ P + V+ L ++V RV++++ R AV+L+ S Sbjct: 263 GGLRRTTTRLLDGEFPKVRSLFPNEHQTTALVDKAALVESVKRVALVA-ERNTAVQLAFS 321 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + + D +A ES+ + + FN ++LL+ + I V Sbjct: 322 DGVLTLDAGSGDEAQASESIEATIDGEDITTGFNPQFLLDGLTAIDQPV-----VELAFT 376 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I G + + D + Y+LMP R+ Sbjct: 377 QASKPVVISG----AVDGDDTDSSFRYLLMPRRL 406 >gi|145592569|ref|YP_001156866.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440] gi|145301906|gb|ABP52488.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440] Length = 377 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV VLL+ DG L++ E+ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVLLRVTDGNLQVSGFDYEVSSQVTVEVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+ VS LL +I + L +G + + G + F L + P ++P+ Sbjct: 61 GDADGATLVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V + + ++ V + A +E + G+ ++ L +ATD +R Sbjct: 117 LPEMP-VSAGTIDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGG--TLAMLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 LA+ E++ + ++ + +VP + + + + L V ++LS E I Sbjct: 174 LALREIEWNPEDPEISLNALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFVGGP 233 Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+DG +P +++ P + + + +V + L + V RV++++ R V LS S D Sbjct: 234 RRTTSRLLDGANYPPVRSLFPATQNAQAQVPVSALIEVVKRVALVA-ERTTPVLLSFSDD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + +A E+M ++ P+ I FN +YL++ + N+ + V + Sbjct: 293 GLVVEAGGTEEARASEAMEATFSGDPLTIGFNPQYLIDGLSNMGTQ-----FAVLSFVDA 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + Y++MP+R+ Sbjct: 348 FKPAVISPVGEDGEVVP----GYRYLIMPIRV 375 >gi|225570326|ref|ZP_03779351.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM 15053] gi|225160858|gb|EEG73477.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM 15053] Length = 406 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 187/385 (48%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 39 MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATADIIKLTANDMELGIQTEIEGE 98 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D + E + + I+ + F L P EF Sbjct: 99 ITERGMIAIDARIFSEIVRKLPDSDIVI---ETDANLQTVITCEKAKFDLSGKPGEEFSY 155 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S E++ LK ++ +T F++A E + G F I + L++ V+ DGHR Sbjct: 156 LPIIEKEESIEISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNILRV--VSLDGHR 213 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ ++A ++VP K + E+ +ILS + +S V +S + + I ++ + Sbjct: 214 ISIRKIELKNEVAD-KKLVVPGKTLTEVSKILSGEAESMVNISYTNNHIVFEFDNTIVVS 272 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R+N L +DR +++ + + +++ + + + Sbjct: 273 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDEIMELK 332 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+E L ++ + F Sbjct: 333 IKSQ-IGSMNEEIMIEKEGKDLLIGFNPKFLIDALRVID-----DEEATLYLMNAKAPCF 386 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+ + Y+++P+ Sbjct: 387 I----------KDDAESYIYLILPV 401 >gi|86738726|ref|YP_479126.1| DNA polymerase III subunit beta [Frankia sp. CcI3] gi|86565588|gb|ABD09397.1| DNA polymerase III, beta subunit [Frankia sp. CcI3] Length = 402 Score = 302 bits (775), Expect = 5e-80, Method: Composition-based stats. Identities = 96/412 (23%), Positives = 170/412 (41%), Gaps = 39/412 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER + E + R + + T + V +LL A +L+I A E+ + Sbjct: 1 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPILKIAAYDYEVAAQCTVH 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ LL +I R L GT + I+ G++ F L P ++ Sbjct: 61 ATVSEEGRGLVNGKLLAEITRALPAAP----VDLGIDGTRLVITCGNARFALPMLPVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + S V + A ++ L G+ I + L L ATD Sbjct: 117 PALPAMPPI-TGHIEGSAFAAAVSQVAIAAGRDDTLPVLTGVRIEIEGDTLTL--AATDR 173 Query: 179 HRLAVAEVDIVAQI----AKMPSI--------------IVPRKAVGEILRILSSKDSSVK 220 +RLAV + + +VP + + + + LS V Sbjct: 174 YRLAVRTLKWRPSETAAGPDEDGVTGVDGPPPTPVTVALVPARTLLDTAKSLSGSGVEVS 233 Query: 221 VSLS-----ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 ++L E+ + + RL+DG FP Y+ ++P S+ ++ L++AV RV Sbjct: 234 IALGTGPSGETLAGFAGSTRQTTTRLLDGSFPPYRKLLPDSSPLIAQLEIAPLQEAVKRV 293 Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 +++++ + V+L+ S D L + +A E++ V Y+ + + FN YLL+ + Sbjct: 294 ALVAA-KTAPVQLTFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGA 352 Query: 336 ISSDEVVDDEVVFRLD--SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + SD V ++N + GK D D Y+LMP+R+ Sbjct: 353 LESDVVRIGFASAEDPAVAANKPAILTGKADDDGEVPD----YRYLLMPIRL 400 >gi|295425826|ref|ZP_06818507.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus amylolyticus DSM 11664] gi|295064519|gb|EFG55446.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus amylolyticus DSM 11664] Length = 376 Score = 302 bits (774), Expect = 5e-80, Method: Composition-based stats. Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L ++ L + S +I I IP S Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLSEDQLVLTGSDTDISIEIKIPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + IS +S F + + Sbjct: 61 EDLSVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKISSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF +A +L+ ++ T FA+AT+E R L+G+ F + + +K AVAT Sbjct: 118 NYPRLPEIPEESSFTIAGKILREIINETQFAVATQESRLVLSGVHFTFSPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV ++++ I +++ Sbjct: 176 DSHRLSERTIALENGPQTKTDLIIPGKSLQELSRIIGEADPEVKVCPGDNQVLCRIGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293 RL+DG +P+ ++P + + + +L A+DR S+++ + R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLLPTESTTSVEFDLADLSSALDRASLLTHAGRNNVVNLNLDTENG 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 K+ +T + ++G E +N + + I FN YL + + V D +V + Sbjct: 296 KVKLTGTSAEIGNVEEDVNFKNLDGKNLTISFNPDYLRDALRA-----SVTDAIVMKFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + ++ P+R Sbjct: 351 PLRPFTVTPNKDDVQ--------FIQLITPVR 374 >gi|251794038|ref|YP_003008769.1| DNA polymerase III subunit beta [Paenibacillus sp. JDR-2] gi|247541664|gb|ACS98682.1| DNA polymerase III, beta subunit [Paenibacillus sp. JDR-2] Length = 380 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 177/396 (44%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK+++ + ++ E + + + TIP+ + ++ + + AS +I I IP Sbjct: 1 MKLSISKHELNEAIQQVAKAASSRPTIPILGGIKIEVTHQGVTLTASDTDISIQSFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 A+VD G++ + A +IV+KL E + I G ++ + Sbjct: 61 RDDLVIANVDKPGNVVLPAKFFVEIVKKLPSDNV---EIEVGAHFQTLIRSGSTDIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E F++ +LK ++ +T A + E L G+ + + ++ LK Sbjct: 118 LDPEEFPVLPSIEQNELFQMPGDLLKAMIRQTVLAASVNEQTPILTGVLWSLQDKQLKF- 176 Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + ++++ K + E+ +++ + V + ++++++ Sbjct: 177 -VATDRHRLASRIAQAETAADYRFNNVVIAAKTLVELSKLVPDQHGLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 I ++ R++DG +P+ +IP EL ++ L A+DR +MS + V+L + Sbjct: 236 IGNVLFYTRVLDGTYPDTSKIIPSVFKTELVLDTKKLTDAIDRAYLMSREEKTNIVRLAT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + ++G+ E + ++ P+ I FN KY+L+++ I S + + Sbjct: 296 MEDGSIEISSSSTELGRVTEQLEPKQFDGEPLKIAFNSKYMLDVLKVIDS-----EHIFI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + IR D YV++P R Sbjct: 351 GFTGAMSPIVIRPTDHSYN---------TYVILPYR 377 >gi|33239453|ref|NP_874395.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp. marinus str. CCMP1375] gi|33236978|gb|AAP99047.1| DNA polymerase III beta subunit [Prochlorococcus marinus subsp. marinus str. CCMP1375] Length = 385 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 186/400 (46%), Gaps = 32/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 MK+ + ++ L R + + + PV +VLL A+ G L + + I ++ Sbjct: 1 MKLVCSQIELNTALQLVSRAVATRPSHPVLANVLLTADAGTGKLSLTGFDLNLGIQTSLS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS++ G+ITV + L +I+ KL + I+ ++ +VN+ N+ +++ +F Sbjct: 61 ASIESSGAITVPSKLFGEIISKLSSESSITLSTDD-SSEQVNLKSKSGNYQVRAMSADDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E ++ ++ ++ T FA +T+E + L G+ LK + ATDG Sbjct: 120 PDLPMVENGAFLKVNANSFAVSLKSTLFASSTDEAKQILTGVNLCFEGNSLK--SAATDG 177 Query: 179 HRLAVAEV---------DIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESR 227 HRLAV ++ + +++ + +P +++ E+ R LS DS + + + Sbjct: 178 HRLAVLDLQNVIASETNPEINNLSEKLEVTLPSRSLRELERFLSGCKSDSEISCFYDQGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 ++ R +DG +PNY +IP +L ++ A++R+++++ VK Sbjct: 238 FVFISSGQIITTRTLDGNYPNYNQLIPDQFSNQLVLDKKYFIAALERIAVLAEQHNNVVK 297 Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 +S + + L ++ D D+G ES+ + Y+ + I FN +YLLE + I ++ ++ Sbjct: 298 ISTNKELQILNISADAQDLGSGSESIPIKYDSEDIQIAFNSRYLLEGLKIIETNTIL--- 354 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + D+ N Y++MP++I Sbjct: 355 --LKFNAPTTPAIFTPNDE---------TNFVYLVMPVQI 383 >gi|332654820|ref|ZP_08420562.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16] gi|332516163|gb|EGJ45771.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16] Length = 368 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + E++ + + A R + K++IP +L++A D L + E I +PA Sbjct: 1 MKFSCEKALLTAAVSIASRAVAAKSSIPAMEGILIEA-DTRLRLTGYNLETGIQATVPAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ +SA L +I+RK+ D + K+ VNI G S F + EFP Sbjct: 60 IKQPGSLVLSARLFGEIIRKMPDDVVVFTSKD----YMVNIKCGMSEFNILGTDPEEFPE 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L S L++++ +T FA++ E R G F ++ DL + V+ DG+R Sbjct: 116 LPTVDQQNSITLEQSALRSMIAQTLFAVSDNESRPVHTGSLFEVDHNDLTV--VSVDGYR 173 Query: 181 LAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ S +VP A+ E+ +I S + V V+ I + Sbjct: 174 LALRREKADKIGGSEQFSFVVPGSALSEVEKIC-SGEGPVTVNQGARHILFQAGDTVLVC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 R ++GEF Y+N IP +N +++ + L +++RVS++ S +++ ++ + +T Sbjct: 233 RRLEGEFLPYRNAIPRNNPIQIQCDTRALLSSIERVSLIISEKLKSPLRCVFGDGMVDIT 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +G A + + + ++I FN KYL++ + +D+ + SS + Sbjct: 293 TKTA-IGDAADQCPIDGDGQGLEIGFNNKYLMDALKAAPADK-----LRLEFSSSVAPCV 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + Y+++P+R+ Sbjct: 347 ILPAEGE--------ETFVYMVLPVRL 365 >gi|325288100|ref|YP_004263890.1| DNA polymerase III subunit beta [Cellulophaga lytica DSM 7489] gi|324323554|gb|ADY31019.1| DNA polymerase III, beta subunit [Cellulophaga lytica DSM 7489] Length = 373 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 181/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELKQNSLTVSASDLETTMSSVLEVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I + A LL + ++ + +EN V IS + L +EFP+ Sbjct: 61 SDNEGTIALPAKLLLETLKTFPEQPLTFVVEEN---NTVEISSNHGKYALAYVDGAEFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +L + +T FA +++R ++G+FF + E+L VATD H+ Sbjct: 118 AVELSNPSTTTILGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +++ I+P+K + + IL ++ V + +ES ++ + R Sbjct: 176 LVKYQRT-DVTASQVAEFIMPKKPLTLLKGILGGSENDVTIEYNESNAKFTFDNTELICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N L ++ T L +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNVLSISRTQLLSSVRRVSIFSNKTTHQIRLKVAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L+E++ N+SS D+V + N + + Sbjct: 295 DIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLGNLSS-----DDVSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + ++MP+ + Sbjct: 350 TPID-----GVDEGEHVTMLVMPVML 370 >gi|256843830|ref|ZP_05549317.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256849615|ref|ZP_05555047.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US] gi|262046283|ref|ZP_06019246.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US] gi|256613735|gb|EEU18937.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 125-2-CHN] gi|256713731|gb|EEU28720.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US] gi|260573613|gb|EEX30170.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US] Length = 376 Score = 302 bits (774), Expect = 6e-80, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + K+ AVAT Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293 RL+DG +P+ +IP + + + L A++R S+++ V L + + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D + ++ P+R Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374 >gi|237784639|ref|YP_002905344.1| DNA polymerase III subunit beta [Corynebacterium kroppenstedtii DSM 44385] gi|237757551|gb|ACR16801.1| DNA polymerase III, beta subunit [Corynebacterium kroppenstedtii DSM 44385] Length = 394 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 91/398 (22%), Positives = 166/398 (41%), Gaps = 28/398 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ L R + K T P+ V++ A+D L + E+ I A V Sbjct: 8 FRVAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLLLAGFDYEVSTRVRISAEVL 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + V+ L DI+ L GT+V+++ G SNF L + ++P Sbjct: 68 EPGQVLVAGKLANDIIGSLPHKDVAISVD----GTKVHVTCGQSNFELPAMTIEDYPELP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + A ++ L GI + +++ L ATD RLA Sbjct: 124 SLPEETGHIDP-HVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDNVVL--AATDRFRLA 180 Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 V E I++P + + + R L ++ + +++++ + + + E Sbjct: 181 VREFTWEPSSPDVDAEILIPARTLADSARTLDTRLNDPIQLAMGAAQDVGKDGLLGIVSE 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + RLID +FP ++ ++P S+ V L A+ RVS+++ R VKL S D Sbjct: 241 NRQTTTRLIDADFPKFRPLLPKSHSSMAIVEIAPLLDAIRRVSLVA-ERNAQVKLEFSED 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L ++ + G A E++ + P+ I FN YL E + +I + VVF Sbjct: 300 QLVLSAGGSEAGTAEETLPAQFAGEPLLIAFNANYLKEGLASIDTK-----NVVFGFTQP 354 Query: 354 NSS-VFIRGKDKDSKNNKDNKVN-----AFYVLMPMRI 385 + + I + + + D + Y+LMP+R+ Sbjct: 355 SRPAILIPEPETMPEQDSDGQFPTPSTYFTYLLMPVRL 392 Score = 44.8 bits (105), Expect = 0.025, Method: Composition-based stats. Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 26/187 (13%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA----VATDGHRL 181 SF +A L + ++A++ + L G+ ++E L L V+T Sbjct: 4 NGVSFRVAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLLLAGFDYEVST----- 58 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSV 239 V I A++ + ++V K +I+ L KD V +S+ +++H+ + + Sbjct: 59 ---RVRISAEVLEPGQVLVAGKLANDIIGSLPHKD--VAISVDGTKVHVTCGQSNFELPA 113 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSDK 294 I+ ++P +P ++ ++ A+ +V+ + +K+ + D Sbjct: 114 MTIE-DYPE----LPSLPEETGHIDPHVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDN 168 Query: 295 LCMTVDN 301 + + + Sbjct: 169 VVLAATD 175 >gi|225377586|ref|ZP_03754807.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM 16841] gi|225210562|gb|EEG92916.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM 16841] Length = 382 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 177/385 (45%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++L + + + + T+ + +L+ A+ +++ A+ E+ I I Sbjct: 13 MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D + E + + I+ + F + +F Sbjct: 73 IAERGIIALDAKIFSEIVRKLPDSDVV---IETDSNFKTTITCEKAKFNIVGKSGDDFSY 129 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F I E LK+ V+ DGHR Sbjct: 130 IPFIERNECISISQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENQLKV--VSLDGHR 187 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + E+ +IL + V + LSE+ I + ++ Sbjct: 188 ISIRNIELKNNY-DHKKVVVPGKTLQEVSKILPGSAEEEVNIFLSENHIVFEFDDTTVVS 246 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ D ++++N L +DR +++ + + ++++ + + Sbjct: 247 RLIEGEYFKIEQMLSSDYDTKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELK 306 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + I FN K+ ++ + I ++EV + + + F Sbjct: 307 I-NSFIGSMNEDIDITKEGKDILIGFNPKFFIDALRVID-----EEEVSLYMVNPKAPCF 360 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ Y+++P+ Sbjct: 361 I----------KDDEGKFIYLILPV 375 >gi|323705849|ref|ZP_08117421.1| DNA polymerase III, beta subunit [Thermoanaerobacterium xylanolyticum LX-11] gi|323534845|gb|EGB24624.1| DNA polymerase III, beta subunit [Thermoanaerobacterium xylanolyticum LX-11] Length = 370 Score = 302 bits (773), Expect = 7e-80, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 189/388 (48%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ +L + + + + T+P+ +LL++ + + + + EI I +I A Sbjct: 1 MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLKSENNKIVMYTTDMEIGIQCSIEAF 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI VS+ + D+VRKL D F E++ V I G + F + EFP Sbjct: 61 IIEDGSIVVSSKVFSDLVRKLPDDTV---FFESDESNMVYIKCGLTEFSISGNSSDEFPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +F L +LK +++ T F++A + R L GI +++ + VA DG+R Sbjct: 118 IPDVIKDVTFSLNQKILKEMIKMTSFSVAQDMARPILTGILMEVSKN--TINMVALDGYR 175 Query: 181 LA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 ++ D +++ S+++P E+LR++ D V +S + ++I + Sbjct: 176 MSIKKYVSEDPLSKNLDDFSVVIPGTTANELLRVMEDSDDEVSISFTGNQILFEFNDTKV 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +L+DG + NY+ VIP + ++ +L A+DR S+++S + +K + + +L + Sbjct: 236 ISKLLDGNYMNYKTVIPKDFKSVVIIDKDDLIGAIDRASLLASNKSNLIKFTFNERELVI 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N + GK E +N+ ++I FN +YLLE + I S + + + +S + + Sbjct: 296 SS-NSEKGKMSERLNIEIEGNLIEIAFNSRYLLEALRVIDSKK-----IKISMINSINPM 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D + Y+++P+++ Sbjct: 350 IITPIEDD---------DYLYMVLPVKL 368 >gi|182416732|ref|ZP_02948131.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521] gi|237669656|ref|ZP_04529634.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] gi|182379389|gb|EDT76884.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521] gi|237654890|gb|EEP52452.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str. BoNT E BL5262] Length = 368 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 107/388 (27%), Positives = 199/388 (51%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 M T E+ +ILE + + I K+T+P+ V ++ N D L + S ++ I + Sbjct: 1 MIFTCEKQEILEGISIVQKAITGKSTMPILEGVYIKTNELDSSLTLIGSDMDVSIQTTVN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A++ GSI + A + +I+RKL + EN++ + I+ S F + +EF Sbjct: 61 ANIIEPGSIVIDAKIFGEIIRKLPNSTIKIETIENQV---IRITCEKSVFDVVYMNTNEF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + ++LKN+++ T FA+A +E R L GI F + ++L L VA DG Sbjct: 118 PELPEINEDLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA+ + + I +++P K + E+ +IL + V ++ + + I N+E + Sbjct: 176 YRLAIKSEFLDSDIE--IEVVIPGKTLNEVSKILEDVEDIVDITFTNNHILFNLEKTKII 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297 RL++G+F NY +++P + + VN L+ +++R S+M+ +KL + D L + Sbjct: 234 SRLLEGKFINYNSLLPQEHKLSVHVNRQELQNSIERASLMAKDGNTNLIKLDIQQDNLII 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N +GK E +++ + I FN +YLL+++ N+ +DEVV ++ S S Sbjct: 294 SS-NSQLGKVREEISMKLQGDEIQIAFNSRYLLDVLKNME-----EDEVVLKMTSGISPC 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I ++N NA Y+++P+R+ Sbjct: 348 VIE---------ENNNENAKYLVLPVRL 366 >gi|29374663|ref|NP_813815.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583] gi|227518107|ref|ZP_03948156.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104] gi|227555686|ref|ZP_03985733.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22] gi|229547128|ref|ZP_04435853.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322] gi|229550698|ref|ZP_04439423.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200] gi|255971550|ref|ZP_05422136.1| DNA polymerase subunit III [Enterococcus faecalis T1] gi|255974523|ref|ZP_05425109.1| DNA polymerase subunit III [Enterococcus faecalis T2] gi|256618526|ref|ZP_05475372.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200] gi|256761855|ref|ZP_05502435.1| DNA polymerase subunit III [Enterococcus faecalis T3] gi|256854982|ref|ZP_05560343.1| DNA polymerase III [Enterococcus faecalis T8] gi|256957014|ref|ZP_05561185.1| DNA polymerase subunit III [Enterococcus faecalis DS5] gi|256960823|ref|ZP_05564994.1| DNA polymerase subunit III [Enterococcus faecalis Merz96] gi|256963984|ref|ZP_05568155.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704] gi|257078691|ref|ZP_05573052.1| DNA polymerase subunit III [Enterococcus faecalis JH1] gi|257081348|ref|ZP_05575709.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol] gi|257084005|ref|ZP_05578366.1| DNA polymerase subunit III [Enterococcus faecalis Fly1] gi|257087835|ref|ZP_05582196.1| DNA polymerase subunit III [Enterococcus faecalis D6] gi|257088487|ref|ZP_05582848.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188] gi|257417427|ref|ZP_05594421.1| DNA polymerase subunit III [Enterococcus faecalis AR01/DG] gi|257418841|ref|ZP_05595835.1| DNA polymerase III [Enterococcus faecalis T11] gi|257421344|ref|ZP_05598334.1| DNA polymerase III subunit beta [Enterococcus faecalis X98] gi|293382661|ref|ZP_06628589.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712] gi|293387927|ref|ZP_06632463.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613] gi|294781249|ref|ZP_06746596.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1] gi|300862250|ref|ZP_07108330.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|307268917|ref|ZP_07550281.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248] gi|307274013|ref|ZP_07555223.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855] gi|307276498|ref|ZP_07557618.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134] gi|307284060|ref|ZP_07564230.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860] gi|307287181|ref|ZP_07567252.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109] gi|307296591|ref|ZP_07576411.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411] gi|312901295|ref|ZP_07760578.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470] gi|312903108|ref|ZP_07762289.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635] gi|312908813|ref|ZP_07767752.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512] gi|312951719|ref|ZP_07770613.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102] gi|312979545|ref|ZP_07791227.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516] gi|29342121|gb|AAO79887.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583] gi|227074441|gb|EEI12404.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104] gi|227175196|gb|EEI56168.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22] gi|229304131|gb|EEN70127.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200] gi|229307710|gb|EEN73697.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322] gi|255962568|gb|EET95044.1| DNA polymerase subunit III [Enterococcus faecalis T1] gi|255967395|gb|EET98017.1| DNA polymerase subunit III [Enterococcus faecalis T2] gi|256598053|gb|EEU17229.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200] gi|256683106|gb|EEU22801.1| DNA polymerase subunit III [Enterococcus faecalis T3] gi|256709495|gb|EEU24542.1| DNA polymerase III [Enterococcus faecalis T8] gi|256947510|gb|EEU64142.1| DNA polymerase subunit III [Enterococcus faecalis DS5] gi|256951319|gb|EEU67951.1| DNA polymerase subunit III [Enterococcus faecalis Merz96] gi|256954480|gb|EEU71112.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704] gi|256986721|gb|EEU74023.1| DNA polymerase subunit III [Enterococcus faecalis JH1] gi|256989378|gb|EEU76680.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol] gi|256992035|gb|EEU79337.1| DNA polymerase subunit III [Enterococcus faecalis Fly1] gi|256995865|gb|EEU83167.1| DNA polymerase subunit III [Enterococcus faecalis D6] gi|256997299|gb|EEU83819.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188] gi|257159255|gb|EEU89215.1| DNA polymerase subunit III [Enterococcus faecalis ARO1/DG] gi|257160669|gb|EEU90629.1| DNA polymerase III [Enterococcus faecalis T11] gi|257163168|gb|EEU93128.1| DNA polymerase III subunit beta [Enterococcus faecalis X98] gi|291079967|gb|EFE17331.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712] gi|291082664|gb|EFE19627.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613] gi|294451712|gb|EFG20167.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1] gi|295112342|emb|CBL30979.1| DNA polymerase III, beta subunit [Enterococcus sp. 7L76] gi|300848775|gb|EFK76532.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11] gi|306495927|gb|EFM65515.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411] gi|306501779|gb|EFM71070.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109] gi|306503431|gb|EFM72680.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860] gi|306506825|gb|EFM75975.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134] gi|306509321|gb|EFM78381.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855] gi|306514725|gb|EFM83276.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248] gi|310625251|gb|EFQ08534.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512] gi|310630292|gb|EFQ13575.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102] gi|310633499|gb|EFQ16782.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635] gi|311287727|gb|EFQ66283.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516] gi|311291672|gb|EFQ70228.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470] gi|315026676|gb|EFT38608.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2137] gi|315030121|gb|EFT42053.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4000] gi|315033556|gb|EFT45488.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0017] gi|315036379|gb|EFT48311.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0027] gi|315143594|gb|EFT87610.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2141] gi|315148268|gb|EFT92284.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4244] gi|315151292|gb|EFT95308.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0012] gi|315153718|gb|EFT97734.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0031] gi|315155122|gb|EFT99138.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0043] gi|315158748|gb|EFU02765.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0312] gi|315163332|gb|EFU07349.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0645] gi|315165727|gb|EFU09744.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1302] gi|315168221|gb|EFU12238.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1341] gi|315170512|gb|EFU14529.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1342] gi|315174181|gb|EFU18198.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1346] gi|315573990|gb|EFU86181.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309B] gi|315578840|gb|EFU91031.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0630] gi|315581941|gb|EFU94132.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309A] gi|323479241|gb|ADX78680.1| DNA polymerase III, beta subunit [Enterococcus faecalis 62] Length = 376 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 189/393 (48%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV+RS L+ L R I K TIP+ V + ++ L + S +I I + Sbjct: 1 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + + +I+RKL + +N +V I+ G ++F + Sbjct: 61 DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDN---NQVAITSGKADFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + +L +L ++ T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + Q + +I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLSQRVIP-TEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S++ ++ L A++R S++S R V+LS+S Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK E++N + +DI FN Y+ + + D + + Sbjct: 295 DSVVLYGNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFG-----DMNITVKFL 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + ++ ++ P+R Sbjct: 350 SPIRPFTLEPTETE--------LDFIQLITPVR 374 >gi|295108628|emb|CBL22581.1| DNA polymerase III, beta subunit [Ruminococcus obeum A2-162] Length = 371 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 85/387 (21%), Positives = 182/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++L+ + + + + K T+P+ +L+ A ++ + E+ I + Sbjct: 1 MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + A + Y+I+R+L D N + T I+ + F + +F Sbjct: 61 IEEKGMVALDAKIFYEIIRRLPDNDVTITTDSNYVAT---ITCEKAKFTIPGKAGEDFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK ++ +T F++A E + G F I + LK+ ++ DGHR Sbjct: 118 LPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCLKI--ISLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + + I+VP K +GEI +ILS + D V + +++ I + + Sbjct: 176 ISIRKMPLKREYSDR-KIVVPGKTLGEISKILSGEIDDQVNIYFTKNHILFEFDQTMVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ D ++ VN +DR +++ + + + ++ + + Sbjct: 235 RLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLLVREGDKKPIVIEITDGSMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ MG E +++ + + I FN K+L++ + I D+ + L + + F Sbjct: 295 IDSA-MGSMNEEIDIEKSGKDIVIGFNPKFLIDALKVID-----DEVINMYLMNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D++ N Y+++P+ I Sbjct: 349 IR----------DDEENYTYLILPVNI 365 >gi|255527585|ref|ZP_05394449.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] gi|296186783|ref|ZP_06855184.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] gi|255508718|gb|EET85094.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] gi|296048497|gb|EFG87930.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7] Length = 367 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 184/386 (47%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E+S + E + + I K+T+P+ + ++ ++ L + S ++ I I + Sbjct: 1 MKFTCEKSILQEGISTVQKAITGKSTLPILNGIHIKTHENELILTGSDIDLSIESKIKSD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A + +I+RKL + +N + I S F L +FP Sbjct: 61 IIEEGSIVIDAKIFGEIIRKLDNDTIHISTIDN---NSIEIVCKKSRFTLIHMNSEDFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + S+LKN++ T FA A +E R L GI F I ++ KL VA DG+R Sbjct: 118 LPNINENMIFSIPQSILKNMIRGTIFATAQDETRPILTGILFEIKDK--KLNLVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + S ++P K + E+ +IL D SV ++ + + I ++ + R Sbjct: 176 LALKSETLDTD--NIISAVIPGKTLSEVSKILEENDESVNITFTPNHILFSVGETKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++GEF Y ++IP + ++ L +++R S+M +K + + + +T Sbjct: 234 LLEGEFIKYNSIIPEEYNLKIIAKRIVLLNSIERASLMGKDGNTNLIKFDIEDENMVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E +N+ P+ I FN KYL++++ + +DEVV L SS S I Sbjct: 294 -NSQLGMVREELNIILQGEPLQIAFNSKYLIDVLKIME-----EDEVVIELSSSVSPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K N N Y+++P+R+ Sbjct: 348 KNK---------NTNNCTYLVLPVRL 364 >gi|163790920|ref|ZP_02185343.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7] gi|159873762|gb|EDP67843.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7] Length = 380 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 187/396 (47%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++RS L+ L R I + TIP+ + + AND L + S +I I IP S Sbjct: 1 MKFTIKRSAFLKSLADVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I + A +IV+KL + + E + I+ ++F + Sbjct: 61 EEENLLTIEKTGGIVLQARFFSEIVKKLPEE---TMTIEILDHFQALITSATASFRINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P + +F L ++ K ++ +T A++T E R L G+ I E K A Sbjct: 118 DPNNYPHLPIIDTSETFTLPVNLFKQVIGQTVIAISTHESRPILTGVNIVIENE--KFLA 175 Query: 174 VATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ + I Q K +II+P K++ E+ R L ++++ ++E+++ Sbjct: 176 VATDSHRLSQRVIPIEMNDEQATKKYNIIIPGKSLIELSRTLDETSDTIEMMITENQVLF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 E+L RL++G +P+ + +IP ++ E+ N + L +++R S++S + VK++ Sbjct: 236 KAENLYFYSRLLEGYYPDTKRLIPDNSSTEISFNASALLGSIERASLLSHEGKNNVVKIT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ D + ++ ++PD+G E + + P+++ FN Y+ + + + + Sbjct: 296 ITPDLIEISGNSPDVGNVKEELEYLSVEGEPIELSFNPDYMKDALRTFGQTD-----IKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + + N + ++ P+R Sbjct: 351 KFTSPVRPFILVPSE--------NGQDFIQLITPVR 378 >gi|67922001|ref|ZP_00515517.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501] gi|67856217|gb|EAM51460.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501] Length = 396 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 94/410 (22%), Positives = 186/410 (45%), Gaps = 41/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK +SD+ L R + + T P+ +VL+ A+ + + A + + + Sbjct: 1 MKFLCSQSDLNSNLSLVSRAVASRPTHPILANVLVVADSQKNRVSLTAFDLSLGLETSFS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF----FKENELGTEVNISHGDSNFYLQSFP 114 A V G IT+ A LL +IV +L +G +++ V + F +++ Sbjct: 61 ADVSEDGKITLRAKLLNEIVSRLPEGEITLMAEEEEDDDDDSQIVVLKSASGQFQVRAMN 120 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP E +L +L ++ FA +++E + L G+ + L+ Sbjct: 121 AEEFPPLPTVEEGELVQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEF--A 178 Query: 175 ATDGHRLAVAEVDIVAQIAKM---------------PSIIVPRKAVGEILRILSSKDSSV 219 ATDGHRL+V E + + ++ +P +A+ E+ R+L S+ S Sbjct: 179 ATDGHRLSVVETTLSPETDDEGNEQGESPEMPNLEGFAVTIPARALRELERMLGSRSESD 238 Query: 220 KVSL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 ++L E+++ + ++VR +DG +PNYQ +IP + + + L +++RV++ Sbjct: 239 TIALQVDEAQVVFQLGYQRLTVRKLDGAYPNYQMLIPQQFSRSICLERKRLLSSLERVAV 298 Query: 278 MSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 ++ + VK + S+ ++ ++VD D+G A ESM +I FN KYL++ + Sbjct: 299 LADQKNNLVKCTFSNEDGQVSLSVDTQDLGSAKESMPAEVTGNSGEIAFNVKYLMDGLKA 358 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ + + +L+ N V + N + Y++MP++I Sbjct: 359 LATKD-----IKIQLNEGNQPVIL---------NPLGGLQMTYLVMPVQI 394 >gi|118496617|ref|YP_897667.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. novicida U112] gi|194323923|ref|ZP_03057698.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. novicida FTE] gi|254372004|ref|ZP_04987497.1| hypothetical protein FTCG_01143 [Francisella tularensis subsp. novicida GA99-3549] gi|254375146|ref|ZP_04990626.1| DNA polymerase III [Francisella novicida GA99-3548] gi|118422523|gb|ABK88913.1| DNA polymerase III, beta subunit [Francisella novicida U112] gi|151569735|gb|EDN35389.1| hypothetical protein FTCG_01143 [Francisella novicida GA99-3549] gi|151572864|gb|EDN38518.1| DNA polymerase III [Francisella novicida GA99-3548] gi|194321820|gb|EDX19303.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. novicida FTE] gi|328676080|gb|AEB26950.1| DNA polymerase III beta subunit [Francisella cf. novicida Fx1] Length = 367 Score = 302 bits (773), Expect = 8e-80, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 217/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L + + I F +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDFRVNE---NKVTIVSNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD KA + + V YN+ PM+ICFNYKYLL+II+ +S ++ + LD+ N S Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367 >gi|327533855|gb|AEA92689.1| DNA-directed DNA polymerase III beta subunit [Enterococcus faecalis OG1RF] Length = 376 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 189/393 (48%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV+RS L+ L R I K TIP+ V + ++ L + S +I I + Sbjct: 1 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + + +I+RKL + +N +V I+ G ++F + Sbjct: 61 DEKAQMTIEHTGSIVLQSRFFGEIIRKLPEDMFTMEVLDN---NQVAITSGKADFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + +L +L ++ T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + Q + +I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLSQRVIP-TEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S++ ++ L A++R S++S R V+LS+S Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK E++N + +DI FN Y+ + + D + + Sbjct: 295 DSVVLYGNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFG-----DMNITVKFL 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + ++ ++ P+R Sbjct: 350 SPIRPFTLEPTETE--------LDFIQLITPVR 374 >gi|210624035|ref|ZP_03294152.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275] gi|210153242|gb|EEA84248.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275] Length = 368 Score = 302 bits (773), Expect = 9e-80, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 188/386 (48%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + + + I + TI + +LL +G L++ S EI I + + Sbjct: 1 MKLICNQKILSQKISIVQKAINSRTTIELLKGILLSTENGALKLTGSDAEIRIETFVQSE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I + A L DIVRKL D E + V+I +S F ++ E+P+ Sbjct: 61 IEEDGKIVLDAKLFGDIVRKLPDS---FVQIETDANNNVHIYCENSRFTIKGHSAEEYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + + +LK+++++T FA++ ++ + L G E+ K VA DG+R Sbjct: 118 FSDVEESEMYSIPQELLKDMIKQTSFAISQDQTKPVLMGELLE--AENGKASLVAIDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV I + K +I+P K + +I +++ + S+ V +E + + R Sbjct: 176 LAVRSCSIDS-FTKDIKVIIPGKTLVDINSLMT-GEGSINVGFTEKNAVFMLGDTKVVTR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L++G+F +Y ++P + +++ L +++R S++S S R +KLS+ D + +T Sbjct: 234 LLEGDFIDYSRLLPKEYNSRIKLKSKALLNSIERASLLSQSERNNLIKLSIRDDAMVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D G E +++ +DI FN +YL+E + NI S +E+ ++ + + Sbjct: 294 -NTDRGNVYEEVSLELEGEYLDIAFNSRYLMEGLKNIDS-----EEIYIEFTTNVNPCIV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D+ ++ Y+L+P+R+ Sbjct: 348 KPVDE---------IDYTYLLLPVRM 364 >gi|295691864|ref|YP_003600474.1| DNA polymerase iii, beta subunit [Lactobacillus crispatus ST1] gi|295029970|emb|CBL49449.1| DNA polymerase III, beta subunit [Lactobacillus crispatus ST1] Length = 376 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + K+ AVAT Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293 RL+DG +P+ +IP + + + L A++R S+++ V L + + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D + ++ P+R Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374 >gi|227877541|ref|ZP_03995602.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] gi|227862864|gb|EEJ70322.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01] Length = 376 Score = 301 bits (772), Expect = 9e-80, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 170/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + K+ AVAT Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293 RL+DG +P+ +IP + + + L A++R S+++ + V L + + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGLNNVVTLTLDIENQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D + ++ P+R Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374 >gi|167627067|ref|YP_001677567.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] gi|167597068|gb|ABZ87066.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25017] Length = 367 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 218/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L N+ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L D + I F ++ +V I +S F L S +P Sbjct: 61 CNTNIKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ L+ ++ R SI+++ + + V+L++S ++ ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD KA + + V YN+ M+ICFNYKYLL+II+ +S ++ + LD+ N S Sbjct: 296 ANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDIINVLS-----EETMTIYLDNPNMSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367 >gi|154508241|ref|ZP_02043883.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC 17982] gi|153797875|gb|EDN80295.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC 17982] Length = 378 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + VS LL DI + L G +VN+ G S+F L P E+P Sbjct: 61 VDEAGEVLVSGRLLADISKSLPSKP----VSVELDGQKVNLVCGSSHFTLAVMPLDEYPL 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +S++ V + A + ++ L G+ IN + L +ATD +R Sbjct: 117 LPSQPTGVGAIDSSTLS-QAVSQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232 LA+ E+D + + +V + + ++ + ++S + V+V LS S I Sbjct: 174 LAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFTA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + L+DG++P + + P + + V+ L +AV R+S+++ R +V+L+ + Sbjct: 233 QGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVA-ERKTSVRLAFTE 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +L + D +A E++ N + FN ++L++ + + + D V F Sbjct: 292 GQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFLIDGLQVLDT-----DYVRFGFTH 346 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I G+ K ++ Y+LMP+R Sbjct: 347 PTKPAVITGQ---KKADEGEVTQFRYLLMPIR 375 >gi|199598233|ref|ZP_03211654.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus HN001] gi|199590836|gb|EDY98921.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus HN001] Length = 379 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F ++ Sbjct: 61 DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + VL+ L+ +T A++T+E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADEALTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + A II+P K++ E+ R+L + +++ ++E+++ Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++S V L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 K + ++PD+G E ++ ++I FN Y+ + + + D Sbjct: 296 GEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + K ++ P+R Sbjct: 351 FTAPLRPFTLVPTED--------KEKFIQLITPVR 377 >gi|254414533|ref|ZP_05028299.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] gi|196178763|gb|EDX73761.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] Length = 400 Score = 301 bits (772), Expect = 1e-79, Method: Composition-based stats. Identities = 88/414 (21%), Positives = 184/414 (44%), Gaps = 45/414 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+T +S++ L R + + T PV +VLL+A + + + A + + + Sbjct: 1 MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLKADAENQRVSLTAFDLSLGLQTSFN 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-------FKENELGTEVNISHGDSNFYLQ 111 A+V+ G+I + A L DIV +L +G + + ++ + ++ Sbjct: 61 ANVEADGAIAIPAKLFNDIVSRLPEGDITLEDSLSEAESDADTESLSITLTSTSGQYKMR 120 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +FP + E +L L + + FA + +E + L G+ + E+ L+ Sbjct: 121 GMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSLEF 180 Query: 172 CAVATDGHRLAVAEV----------------DIVAQIAKMPSIIVPRKAVGEILRIL--S 213 ATDGHRLAV E + VP + + E+ R+L S Sbjct: 181 --AATDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGLS 238 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 +V + +I + ++ R ++G++P Y+ +IP +++ + L AV+ Sbjct: 239 ESSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAVE 298 Query: 274 RVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 R+++++ + VK + + + +TV+ D+G A ES++ ++I FN KYL++ Sbjct: 299 RIAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLID 358 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S+ + + F+++++N+ V + + Y++MP++I Sbjct: 359 GLKALSTSD-----IQFQMNAANTPVILTP---------LGGLKMTYLIMPVQI 398 >gi|241667602|ref|ZP_04755180.1| DNA-directed DNA polymerase [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254876147|ref|ZP_05248857.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] gi|254842168|gb|EET20582.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia ATCC 25015] Length = 367 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 121/387 (31%), Positives = 218/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L N+ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L D + I F ++ +V I +S F L S +P Sbjct: 61 CNTNVKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ L+ ++ R SI+++ + + V+L++S ++ ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD KA + + V YN+ M+ICFNYKYLL+II+ +S ++ + LD+ N S Sbjct: 296 ANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDIINVLS-----EETMTIYLDNPNMSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367 >gi|187930915|ref|YP_001890899.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] gi|187711824|gb|ACD30121.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. mediasiatica FSC147] Length = 367 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 217/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L + + I F +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITEAIIDSKVLDSASKSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD KA + + V YN+ PM+ICFNYKYLL+II+ +S ++ + LD+ N S Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367 >gi|149370683|ref|ZP_01890372.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49] gi|149356234|gb|EDM44791.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49] Length = 372 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 180/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L II NT+P+ + L + + L++ AS E +T + Sbjct: 1 MKFIVSSSYLLKKLQVLGGIINNNNTLPILDNFLFELHGNSLKVSASDLESTVTSMLDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ + A LL D ++ + +EN V IS + L +EFPS Sbjct: 61 SNEVGNVCIPARLLLDTLKTFPEQPLTFTLEEN---NTVEISSNHGKYALAYADGAEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + +L + +T FA +++R ++G+FF N + L VATD H+ Sbjct: 118 AVELKDPSSTIIQGDILATAISKTIFASGNDDLRPVMSGVFFQFNTDGLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + A+ I+P+K + + IL+ + V V ++S + + + R Sbjct: 176 LVKYTRE-DVKAAETAEFIMPKKPLNLLKSILAGSEDEVVVEYNDSNAKFSFDGTELICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L ++ +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSISRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L E+++N++ D+V + N + + Sbjct: 295 DVDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLTC-----DDVSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPVD-----GLDEGERVTMLVMPVML 370 >gi|229551103|ref|ZP_04439828.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|258538193|ref|YP_003172692.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus Lc 705] gi|229315564|gb|EEN81537.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1] gi|257149869|emb|CAR88841.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus Lc 705] Length = 379 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F ++ Sbjct: 61 DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + VL+ L+ +T A++T+E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + A II+P K++ E+ R+L + +++ ++E+++ Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++S V L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 K + ++PD+G E ++ ++I FN Y+ + + + D Sbjct: 296 GEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + K ++ P+R Sbjct: 351 FTAPLRPFTLVPTED--------KEKFIQLITPVR 377 >gi|332971205|gb|EGK10168.1| DNA-directed DNA polymerase III beta subunit [Desmospora sp. 8437] Length = 378 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 195/395 (49%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK + R+ + E + + + K T+P+ + ++ L + S ++ I IP Sbjct: 1 MKFRICRTALTEAVSQVSKAVSTKTTVPILTGIHATVDEEGLWLTGSNSDLTIQVCIPLR 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +VD GS+ + + DIVRKL G Q+ + + T ++ ++F L+ Sbjct: 61 RDDKELVNVDTMGSVVLPGRIFSDIVRKLP-GDQVEWDVDERWKTTLH--SDQAHFELKG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + F L + +LK+++ +T FA++T E R L G+ + + E +L Sbjct: 118 LDPEEYPRVPRFDEEQMFSLPAELLKSMIRQTGFAVSTSEARGVLTGVLWRL--ESGRLT 175 Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD RL+ E D+ + + ++++P K++ E+ +IL+ + V V L++++I + Sbjct: 176 FVATDSIRLSRKEADVEVPEELTLENVVIPGKSLSELGKILADQTGWVDVILADNQIMVR 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 + L RL+DG +P+ VIP S E+RV+ + Q+VDR +++S R +K ++ Sbjct: 236 SDHLLFFSRLLDGTYPDTNRVIPKSGKTEIRVSTKEILQSVDRAALISRDGRDNVIKWTV 295 Query: 291 SS-DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + D+G +E ++ + + + FN +Y+++ + + S DE+ Sbjct: 296 KEKGVVQVQSAAQDVGSVLEEVDAQVDGEEVSLSFNAQYMMDALRAVDS-----DEIRIL 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L + + I+ D++ +A ++++P+R Sbjct: 351 LTGTMTPFLIQPADRE---------DALHLIVPIR 376 >gi|56707189|ref|YP_169085.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|89255451|ref|YP_512812.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica LVS] gi|110669659|ref|YP_666216.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis FSC198] gi|115313983|ref|YP_762706.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134301171|ref|YP_001121139.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|156501372|ref|YP_001427436.1| DNA polymerase III, subunit beta [Francisella tularensis subsp. holarctica FTNF002-00] gi|208780098|ref|ZP_03247441.1| DNA polymerase III, beta subunit [Francisella novicida FTG] gi|254366861|ref|ZP_04982899.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica 257] gi|254368433|ref|ZP_04984450.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|254371403|ref|ZP_04987404.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|56603681|emb|CAG44635.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis SCHU S4] gi|89143282|emb|CAJ78443.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica LVS] gi|110319992|emb|CAL08018.1| DNA polymerase III, beta chain [Francisella tularensis subsp. tularensis FSC198] gi|115128882|gb|ABI82069.1| DNA-directed DNA polymerase [Francisella tularensis subsp. holarctica OSU18] gi|134048948|gb|ABO46019.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis WY96-3418] gi|134252689|gb|EBA51783.1| DNA polymerase III, beta chain [Francisella tularensis subsp. holarctica 257] gi|151569642|gb|EDN35296.1| DNA polymerase III [Francisella tularensis subsp. tularensis FSC033] gi|156251975|gb|ABU60481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica FTNF002-00] gi|157121327|gb|EDO65528.1| DNA polymerase III [Francisella tularensis subsp. holarctica FSC022] gi|208744102|gb|EDZ90403.1| DNA polymerase III, beta subunit [Francisella novicida FTG] gi|282158288|gb|ADA77679.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis NE061598] Length = 367 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 120/387 (31%), Positives = 217/387 (56%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L + + I F +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD KA + + V YN+ PM+ICFNYKYLL+II+ +S ++ + LD+ N S Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367 >gi|291536989|emb|CBL10101.1| DNA polymerase III, beta subunit [Roseburia intestinalis M50/1] Length = 370 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++L + + + + T+ + +L+ A+ +++ A+ E+ I I Sbjct: 1 MKLICSKSNLLYGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D E + + I+ + F + +F Sbjct: 61 IAERGVIALDAKIFSEIVRKLPDSDV---TIETDASFKTTITCEKAKFNIVGKSGDDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F I E DLK+ V+ DGHR Sbjct: 118 IPYIERNEPIVMSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ + ++VP K + E+ +IL + V + L+++ I E+ ++ Sbjct: 176 ISIRNIELKNNYS-HKKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + ++++N L +DR +++ + + ++++ + + Sbjct: 235 RLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + I FN K+ ++ + I ++EV + + + F Sbjct: 295 I-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVID-----EEEVTLYMVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ Y+++P+ Sbjct: 349 I----------KDDEGTFIYLILPV 363 >gi|238855507|ref|ZP_04645812.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3] gi|260665211|ref|ZP_05866060.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|282931533|ref|ZP_06337032.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] gi|313472765|ref|ZP_07813253.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153] gi|238831873|gb|EEQ24205.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3] gi|239529254|gb|EEQ68255.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153] gi|260560948|gb|EEX26923.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US] gi|281304340|gb|EFA96443.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] Length = 376 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 99/392 (25%), Positives = 185/392 (47%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ L+ L + R I + TIP+ + + ++ L + S +I I IP S Sbjct: 1 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEDLILTGSDTDISIEIKIPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +I++KL F E + G + IS +S F + + Sbjct: 61 EDLKVESTGSIVLPARFFNEIIKKLPGKD---FNFEVKEGLQTQISSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +FE++ + ++ T+FA++T+E R L G+ F K+ AVAT Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVF--NQAKIKAVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ +D+ +I+P K++ E+ RI+ +D V V+ ++++ I ++S Sbjct: 176 DSHRLSQRVIDLENGPQVETDLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNIS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P ++ + +L QA+DRVS+++ + R VKL+L + Sbjct: 236 FYSRLLEGTYPDTDRLLPTNSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTQNG 295 Query: 294 KLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + D+P++G E + ++I FN YL + + D V+ Sbjct: 296 VAQLEGDSPEIGTVEEKPLAKQLTGQNLEISFNPDYLQAALRA-----SITDTVIMNFTE 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + +D V+ ++ P+R Sbjct: 351 ALRPFTVVPGKED--------VDFIQLITPVR 374 >gi|150014894|ref|YP_001307148.1| DNA polymerase III subunit beta [Clostridium beijerinckii NCIMB 8052] gi|149901359|gb|ABR32192.1| DNA polymerase III, beta subunit [Clostridium beijerinckii NCIMB 8052] Length = 366 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 108/386 (27%), Positives = 198/386 (51%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T E+ ILE + + I K+T+P+ + + AN+ + + S ++ I + A+ Sbjct: 1 MIFTCEKQKILEGISIVQKAITGKSTMPILEGIYINANNSTITLIGSDMDVSIQTLVDAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A + +I+RKL + EN+L + I+ S F + +EFP Sbjct: 61 IMEEGSIVIDAKIFGEIIRKLPNSTIRIETMENQL---IKITCEKSIFDVVYMNTNEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++LKN+++ T FA+A +E R L GI F + ++L L VA DG+R Sbjct: 118 LPEINENLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVRNKNLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I +++P K + E+ +IL D V ++ + + I N++ + R Sbjct: 176 LAIKSEFLDTDID--IEVVIPGKTLNEVSKILEDIDEIVDITFTNNHILFNLKRTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++G+F NY++++P + + VN L+ A++R S+M+ +KL L D L +T Sbjct: 234 LLEGKFINYKSLLPQEHKLFVNVNRQELQNAIERASLMAKDGNTNLIKLDLHQDNLVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK + +++ ++I FN KYLL+++ N+ D+EVV ++ S S I Sbjct: 294 -NSQLGKVRDEISIKLQGDEIEIAFNSKYLLDVLKNME-----DNEVVMKMTSGISPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + NA Y+++P+R+ Sbjct: 348 EEHNNE---------NAKYLVLPVRL 364 >gi|328675184|gb|AEB27859.1| DNA polymerase III beta subunit [Francisella cf. novicida 3523] Length = 367 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 119/387 (30%), Positives = 216/387 (55%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L + + I F +V I +S F L S +P Sbjct: 61 CNTSIKLALNADKIYNIVRSLNENSMIDFRVNE---NKVTIVSNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +NPD KA + + V YN+ M+ICFNYKYLL+II+ +S ++ + LD+ N S Sbjct: 296 ANNPDNEKAEDKIEVQYNDQAMEICFNYKYLLDIINVLS-----EETMTIYLDNPNMSAL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + KD K N+ +++MPM+I Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367 >gi|325955723|ref|YP_004286333.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC] gi|325332288|gb|ADZ06196.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC] Length = 376 Score = 301 bits (771), Expect = 1e-79, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSESSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F N + +K AVAT Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI++ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL+DG +P+ +IP + + L A++R S+++ + R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMNFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D V+ ++ P+R Sbjct: 351 PLRPFVINPDKED--------VDFVQLITPVR 374 >gi|210614349|ref|ZP_03290168.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787] gi|210150693|gb|EEA81702.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787] Length = 369 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 186/385 (48%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++ + + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIICTKSNLAKGVNIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D E++ + I+ + F + + +F Sbjct: 61 IIQKGVIAIDAKIFSEIVRKLPDNEI---TIESDSNLQTMITCEKAKFSISAKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK L+ +T F++A + + G F I+E LK+ V+ DGHR Sbjct: 118 LPYIEKAESITLSQFTLKELIRQTIFSIADNDSNKLMTGELFEIDENILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ + ++ + ++VP K + E+ +ILS + DS+V +S +++ + ++ + Sbjct: 176 ISIRKTELTKNY-QSRKVVVPGKTLMEVSKILSGEADSTVCLSFTDNHVVFEFDNTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++++N L +DR +++ + + +++ + + + Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVKINKKELLSCIDRATLLVKEGDKKPIIINIMDEVMELR 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+EV L ++ + F Sbjct: 295 IKSQ-LGSMNEEIMISKEGKDLLIGFNPKFLIDALRVIE-----DEEVTIYLMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D K + Y+++P+ Sbjct: 349 IR----------DEKESYVYLILPV 363 >gi|256851675|ref|ZP_05557063.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260661608|ref|ZP_05862520.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|282934241|ref|ZP_06339518.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] gi|256615633|gb|EEU20822.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN] gi|260547665|gb|EEX23643.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN] gi|281301715|gb|EFA93982.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1] Length = 376 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 182/392 (46%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ L+ L + R I + TIP+ + + ++ L + S +I I IP S Sbjct: 1 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +I++KL F E + G + IS +S F + + Sbjct: 61 ADLTVESTGSIVLPARFFNEIIKKLPGKD---FSFEVKEGLQTQISSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +FE++ + ++ T+FA++T+E R L G+ F K+ AVAT Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVF--NQAKIKAVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ +D+ +I+P K++ E+ RI+ +D V V+ ++++ I ++S Sbjct: 176 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293 RL++G +P+ ++P ++ + +L QA+DRVS+++ + R VKL+L + Sbjct: 236 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + D+P++G E ++I FN YL + + D V+ Sbjct: 296 VAQLEGDSPEIGTVEEKPWAKQITGQNLEISFNPDYLQAALRA-----SITDTVIMNFTE 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D + ++ P+R Sbjct: 351 PLRPFTVVPGKEDVE--------FIQLITPVR 374 >gi|221632726|ref|YP_002521947.1| DNA polymerase III subunit beta [Thermomicrobium roseum DSM 5159] gi|221156728|gb|ACM05855.1| DNA polymerase III, beta subunit [Thermomicrobium roseum DSM 5159] Length = 380 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 91/393 (23%), Positives = 172/393 (43%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ +S++ L R + R++T+PV +VLL A++ L I A+ EI ++ + PA Sbjct: 1 MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G ++V A + + + L I ++ ++ G S + P +FPS Sbjct: 61 VTDPGQLSVRADVFTEFIGSLPKQDVILSGTTG--SNDLRVTCGTSKARIPGIPAEDFPS 118 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L+ + + FA AT++ R L G+ +L L A DG Sbjct: 119 LPRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTL--AAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237 RL+V + + A +IIVP +A+GE+ R+L + +V++ ++ + ++ L Sbjct: 177 RLSVRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEF 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------- 290 RLIDG FP ++ +IP + V+ + A R I + + VKL + Sbjct: 237 LSRLIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSEL 296 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L ++ D G + + + I FN +YL +++ + E+ + Sbjct: 297 DPGSLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKAT-----EIALEM 351 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + N++ R +S +V+MPM Sbjct: 352 TTPNAAGVFRPVGDES---------FVHVVMPM 375 >gi|326329130|ref|ZP_08195458.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium Broad-1] gi|325953017|gb|EGD45029.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium Broad-1] Length = 379 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 166/395 (42%), Gaps = 28/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V+R + + A R + + + PV +L++A L + E + A Sbjct: 1 MKFRVDRDVFADAVAWAARSLPVRPSTPVLSGLLIEAGHEGLVLSTFDYETSARATLSAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G VS LL DI R L + + G V+++ G + F LQ+ P ++P+ Sbjct: 61 VADEGKALVSGKLLADICRSLP-AKPVEMVTD---GARVSLTCGSARFSLQTMPVEDYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V + A +++ L G+ I + L +ATD R Sbjct: 117 LPEMPTAAG-TVKSELFAHAVAQAVTAAGRDDMLPVLTGVRLEIEGSTISL--LATDRFR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN--- 231 L+ E++ + +VP K +G+ + L+S S V ++LS E I Sbjct: 174 LSHRELEWNPATPDESLAALVPAKVLGDTAKSLTSG-SEVTLALSTTGTGEGIIGFEGAA 232 Query: 232 -IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + RL+DGEFP +++ P + V+ +L ++V RV++++ R AV++ Sbjct: 233 AGGVRRTTTRLLDGEFPKVRSLFPAEHLTTALVDKASLVESVKRVALVA-ERNTAVQMVF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L + + D +A ES+ + FN ++LL+ + I + V Sbjct: 292 EDGVLTLDAGSGDEAQASESIEATMEGEGLTTGFNPQFLLDGLQAID-----EQVVELAF 346 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V I GK + + Y+LMP R+ Sbjct: 347 TQAPKPVVISGKPAEGG----EEPGFRYLLMPRRL 377 >gi|256848505|ref|ZP_05553947.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis 101-4-CHN] gi|256714772|gb|EEU29751.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis 101-4-CHN] Length = 378 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 176/395 (44%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ RS L + R I K TIP+ V + D + + S +I I + A Sbjct: 1 MKFTINRSVFANQLNNVLRAISSKTTIPILTGVKIVVEDQQVILTGSNADITIQTTLSAE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +I++KL D E G + IS G + F + Sbjct: 61 NGKTALTIEEPGAIVLPARFFSEIIKKLPDQDV---TIEVHDGFQAKISSGTAEFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + +L+++VE+T A++ +E R L GI + ++ +L A Sbjct: 118 DANNYPHLPEIQSASTITAVADLLRDVVEQTRIAVSKQESRPILTGIHMRLADD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA +V + + +++P ++ E+ R+++ +++ ++E+++ + Sbjct: 176 VATDSHRLAQRKVTVPTN-GQSYDVVIPGNSMTELARMIADVKGDIQIQIAENQVLFQFD 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 + RL++G +P +IP + D + + N A+DR S++S VKLSL Sbjct: 235 NALFYSRLLEGMYPETSRLIPDTADTTIELEAGNFLAAIDRASLLSHQGHNNVVKLSLDP 294 Query: 293 --DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ D+ D+G E ++ ++I FN Y+ + + + V+ Sbjct: 295 DTNTAKISGDSADVGNVEEDVSFEKLTGNKLEISFNPDYMSDALKSFGQASVL-----LS 349 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + N ++ P+R Sbjct: 350 FTSPLRPFTLVPTED--------QENFVQLITPVR 376 >gi|307717719|ref|YP_003873251.1| DNA polymerase III subunit beta [Spirochaeta thermophila DSM 6192] gi|306531444|gb|ADN00978.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6192] Length = 367 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 179/385 (46%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ER ++++ + A II KN + + +VLL A D L I+A+ ++ + P Sbjct: 1 MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSRLTIRATDLKVGFETSSPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV L I+R L GA + F + + NF L++ ++P Sbjct: 61 VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + S L ++ T FA++ +E RY++NG+F E+ L + VATDG R Sbjct: 120 MP-LHGDSYFSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E + + +I+P K + ++L + V V++ E + L + +S Sbjct: 177 LAYIEKGVDGGVPDFNGVIIPPKILHLARKLLP-GEGMVDVAIGEKHVFLRYGDVYLSSN 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G FP Y+ VIP + +A+ RVS++ + + V L++ L ++ + Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVSSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E + Y + + I NY YLLE + + +++V + ++ +R Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVM-----TEEQVEIAFTEPSRAITVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + F+++MPM++ Sbjct: 351 PV---------PEREFFHIVMPMQL 366 >gi|68535064|ref|YP_249769.1| DNA polymerase III subunit beta [Corynebacterium jeikeium K411] gi|260579562|ref|ZP_05847433.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC 43734] gi|68262663|emb|CAI36151.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium K411] gi|258602333|gb|EEW15639.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC 43734] Length = 394 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 90/398 (22%), Positives = 169/398 (42%), Gaps = 28/398 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D LG R + K T P+ V++ A+D LE+ E+ I A V+ Sbjct: 8 FIVPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFDREVSTRVRINAEVN 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L DIV L + F GT V + G S F L + ++P Sbjct: 68 EPGKILVAGKLASDIVGSLPNKPINIEFD----GTTVILKTGKSKFELPAMTIEDYPVLP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 E V ++ + + A ++ L G+ I+ E+ + VATD RLA Sbjct: 124 ELPEVTGTIDP-NLFAESISQVAVAAGRDDTLPMLTGVHVEIDGEN--VIMVATDRFRLA 180 Query: 183 VAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLNIE 233 V AQ +++P + + + R + + +++++ + + ++ E Sbjct: 181 VRSFQWNPAQADAQAKLLIPARTLADTARSMDPNNTDPIEIAVGSGEDIGADGLLGISTE 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S + RL+D EFP ++ ++P ++ V L++A+ RVSI++ R +++ + Sbjct: 241 SRHTTTRLLDAEFPKFRPLLPKTHTALASVEIAPLQEAIKRVSIVA-ERNSQIRMDFKDN 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ D+G A E+++ + P+ I FN YL E + I + VVF + Sbjct: 300 TVTLSAGGSDVGSATETLDCAFAGEPLVIAFNPSYLKEGLAAIHT-----PRVVFGFTMA 354 Query: 354 NSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + + + Y+LMP+R+ Sbjct: 355 SRPAILLPDPGELPEADAEGNFATPETDFTYLLMPVRL 392 Score = 44.5 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 24/181 (13%), Positives = 67/181 (37%), Gaps = 16/181 (8%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 SF + + + ++ ++ + L G+ ++E L+L R V Sbjct: 5 AVSFIVPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFD----REVSTRV 60 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDGE 245 I A++ + I+V K +I+ L +K + + + + L + + + Sbjct: 61 RINAEVNEPGKILVAGKLASDIVGSLPNK--PINIEFDGTTVILKTGKSKFELPAMTIED 118 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTVD 300 +P V+P + ++ +++ +V++ + V + + + + M Sbjct: 119 YP----VLPELPEVTGTIDPNLFAESISQVAVAAGRDDTLPMLTGVHVEIDGENVIMVAT 174 Query: 301 N 301 + Sbjct: 175 D 175 >gi|293380892|ref|ZP_06626928.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1] gi|290922565|gb|EFD99531.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1] Length = 376 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 172/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 61 DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + + K+ AVAT Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293 RL+DG +P+ +IP + + + L A++R S+++ + R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDVENQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D + ++ P+R Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374 >gi|315037232|ref|YP_004030800.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112] gi|312275365|gb|ADQ58005.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112] gi|327182551|gb|AEA30998.1| DNA polymerase III subunit beta [Lactobacillus amylovorus GRL 1118] Length = 376 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSESSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F N + +K AVAT Sbjct: 118 NYPRLPEISDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI++ D VKV +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL+DG +P+ +IP + + L A++R S+++ + R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMNFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D V+ ++ P+R Sbjct: 351 PLRPFVINPDKED--------VDFVQLITPVR 374 >gi|258506997|ref|YP_003169748.1| DNA polymerase III beta subunit [Lactobacillus rhamnosus GG] gi|257146924|emb|CAR85897.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus GG] gi|259648367|dbj|BAI40529.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus rhamnosus GG] Length = 379 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 172/395 (43%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+ RS L+ L R I K TIP+ + + ND L + S +I I I A Sbjct: 1 MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G I + A +IV++L + K+N + I+ G S F ++ Sbjct: 61 DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E + + + VL+ L+ +T A++ +E R L G+ I + +L A Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + A II+P K++ E+ R+L + +++ ++E+++ Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290 + RL++G +P+ +IP S++ + + L ++ R S++S V L++ Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++PD+G E ++ ++I FN Y+ + + + D Sbjct: 296 GEQRATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVD----- 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + K ++ P+R Sbjct: 351 FTAPLRPFTLVPTED--------KEKFIQLITPVR 377 >gi|197302270|ref|ZP_03167329.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC 29176] gi|197298701|gb|EDY33242.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC 29176] Length = 369 Score = 300 bits (770), Expect = 2e-79, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 182/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I +I Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVVKLTANDMELGIETSIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I ++A + +IVRKL D E E + I+ + F + + +F Sbjct: 61 IVERGIIALNAKIFSEIVRKLPDSEV---TIETESDNQALITCEKAKFSIAAQSGDDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK + +T F++A + + G F I E LK+ V+ DGHR Sbjct: 118 LPAIESNDFITVSEFTLKEAIRQTIFSIADNDTNKMMTGELFEITENVLKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++D+ + +IVP K + EI +I+ + ++ V++S +++ I + + Sbjct: 176 ISIRKIDLK-DSYEPRKVIVPGKTLQEISKIIGGEAEAEVQISFTKNHIVFEFDRTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++RVN L +DR +++ + + + + D + M Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVRVNKRELLDCIDRATLLIKEGDKKPIIIDIKDDAMQMM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+EV ++ + F Sbjct: 295 IKSQ-IGSMDEVILCTKDGKDLMIGFNPKFLIDALRVID-----DEEVDLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + + Y+++P+ Sbjct: 349 I----------KDEEQSYIYLILPV 363 >gi|313199779|ref|YP_004038437.1| DNA polymerase III subunit beta [Methylovorus sp. MP688] gi|312439095|gb|ADQ83201.1| DNA polymerase III, beta subunit [Methylovorus sp. MP688] Length = 341 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 105/361 (29%), Positives = 191/361 (52%), Gaps = 22/361 (6%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 +P+ ++LL+A D + + A+ E++I+ A+ V S T+SA L DI R L + A+ Sbjct: 1 MPILSNLLLEAKDEKIVLTATDLEMQISLALQTPVGGELSTTISAKKLLDICRSLPENAE 60 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS--FELASSVLKNLVERT 144 I+ + + + G S F LQ+ P +++P + + LK L ++ Sbjct: 61 ITMATAE---SRIQVKTGKSRFNLQTLPAADYPVMTKATGTTYTVVTIDQKSLKRLFKQV 117 Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FAMA ++IRYYLNG+ F +N +L V TDGHRL+ ++ AQ + +I+PRK Sbjct: 118 EFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDGHRLSFTSTEL-AQSYEKQELILPRKT 174 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 V E++++L + V + ++ +++ + + + ++IDG+FP+Y VIP + V+ Sbjct: 175 VIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLISKVIDGKFPDYTRVIPVGHKNSFNVD 234 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 + A+ R SI+S+ + + +++ L SD L + N + +A E + + Y +DI F Sbjct: 235 RMTILLAMQRASILSNEKYRGIRMVLGSDSLRLISTNSEQEEAEEELEIAYAGDSLDIGF 294 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N Y++++++N++ D V F +NSS + D ++ YV+MPMR Sbjct: 295 NVTYMIDVLNNVNC-----DSVTFSFADANSSCLVTVADDET---------YKYVVMPMR 340 Query: 385 I 385 I Sbjct: 341 I 341 >gi|81251077|gb|ABB69879.1| DNA polymerase III beta chain [Nitrosospira sp. TYM9] Length = 369 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 201/389 (51%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT ++ Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKREKISFIATDLEIQITTSVED 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 S+TV A L DI+R L D Q++ ++ G S F LQ+ P + Sbjct: 61 ANPAGEERSVTVPAKKLQDILRALPDKVQVTLET---GENRLHAKAGKSRFNLQTLPVED 117 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + LK+++ +AMA ++IR YLNG+ + + LK+ VAT Sbjct: 118 FPKFPESTEPQAKITVQQKELKHILSMVQYAMAQQDIRCYLNGLLLLMEDSYLKV--VAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + A K +I+PRK V E+ R+L+ D V + ++++ ++ Sbjct: 176 DGHRLAFALMLLAAPQEKKE-VILPRKVVLELSRLLNDVDEPVTMEFLQNQVRFTFSNVI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP +K+ +N L Q + R SI+S+ + + V+L L+S L Sbjct: 235 LVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + Y +DI FN YLL+++++++ + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNC-----ETVRCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + YV+MPMRI Sbjct: 350 ALISIP---------GNNDFKYVVMPMRI 369 >gi|56961784|ref|YP_173506.1| DNA polymerase III subunit beta [Bacillus clausii KSM-K16] gi|56908018|dbj|BAD62545.1| DNA-directed DNA polymerase III beta subunit DnaN [Bacillus clausii KSM-K16] Length = 380 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 94/397 (23%), Positives = 178/397 (44%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + +ER+ ++ + H + + + TIP+ + L A+ L + S ++ I IP Sbjct: 1 MHVIIERNRMVHDVQHVAKAVSSRTTIPILTGIKLVADANGLTLTGSDSDLSIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + + +IV+KL + T I G S F L Sbjct: 61 ENEREIVQIEQAGSIVLQSKYFAEIVKKLPGETIEIQVHDQFAAT---IRSGSSVFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + + F L +L+N++ +T FA++T+E R L G+ E+ +L Sbjct: 118 LDPEEYPRLPQLKEDLIFSLPQDMLRNIIRQTVFAVSTQETRPVLTGVNIET--ENGELI 175 Query: 173 AVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ + I +Q + ++++P K++ E+ +IL ++ ++E++I Sbjct: 176 CTATDSHRLAMRKTKIDSQDEGLEFKNVVIPGKSLQELSKILEDTSDLAEIVVTENQILF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--L 288 + +L RL++G++P +IP V L ++R ++S V Sbjct: 236 KLGNLLFFSRLLEGKYPVTSGMIPTQFKTSFVVKTKELVHTLERAMLLSREAKNNVINVK 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L +++ +T + ++GK E M + + I FN K +L+ + + S DEV Sbjct: 296 TLGDNQIEITSTSQEIGKVTEKMATDQFEGDEIRISFNGKNILDALKVVDS-----DEVQ 350 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L + S IR D D + ++ P+R Sbjct: 351 IFLTGAMSPFVIRPIDSD---------HYLHLFSPVR 378 >gi|295694689|ref|YP_003587927.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912] gi|295410291|gb|ADG04783.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912] Length = 375 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 184/392 (46%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+I V + + L R + +T+P+ + L A+ L + A+ EI + + A Sbjct: 1 MRIHVHQQSLAAALQQVQRAVSAHSTMPILGGIKLTADTDSLRLIATNQEIAVETYLAAD 60 Query: 60 ----SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 S+++ GSI + A ++VRKL D + V I+ + F L F Sbjct: 61 SDTLSIEMPGSIVLPARYFVELVRKLPDPWVHLTV---QQPYSVQITSAQAAFLLHGFDP 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 EFP + F + S LK+ + +T A+A EE R L G+ + + + + Sbjct: 118 EEFPRLPQIASDQPFLIHSDNLKDAIRQTVVAIAAEETRPVLTGLCMKFDADSITF--IG 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA ++ + I +VP K++ E+ R+L D+ V ++++++ + ++ ++ Sbjct: 176 TDSHRLASRKLFLQGGPEGASEIAVVPGKSIHELARLLPEDDTPVTMTIADNTLLVSSDT 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 RL++G++P+ +IP + + + A++R +++ + Q V+L L SD Sbjct: 236 TRFFTRLLEGQYPDTSKIIPTTFKTRIHIRRDPFASALERALLIAREMQNQVVRLQLQSD 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ + D+G+ E + + ++ + + FN KY+L+ + + +++ D Sbjct: 296 RIELSAHSHDVGRVSEQVPLDQFSGDALTLAFNGKYMLDAVRSFDGEQLTVD-----FTG 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + +R D ++++P+R Sbjct: 351 TMSPMILRPTDGQE---------YLHLVLPVR 373 >gi|213964020|ref|ZP_03392264.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno] gi|213953352|gb|EEB64690.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno] Length = 384 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 106/386 (27%), Positives = 176/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 11 MKFIVSSSYLLKKLQVFGGVINSNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 70 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL DI++ + KEN + + IS N+ L EFP Sbjct: 71 SDSQGSIAVSAKLLIDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 127 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + VL V++T FA +++R ++GI F +E L V TD H+ Sbjct: 128 PVALPEASKVTMLGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 185 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + + I+P+K + + IL+ ++ V V +ES + + + R Sbjct: 186 L-VKYERLDIKANDAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICR 244 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY VIP N +L +N + +++R+S+ S+ V+L ++ L ++ + Sbjct: 245 LIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKVAGSSLVISAE 304 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D K E Y ++I FN K+L E+I+N+ S DE++ + N + I Sbjct: 305 DIDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDS-----DEILIEMSLPNRAGLI 359 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + MP+ + Sbjct: 360 TPVD-----GLDEGEKVLMLAMPIML 380 >gi|302864510|ref|YP_003833147.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC 27029] gi|315500820|ref|YP_004079707.1| DNA polymerase iii, beta subunit [Micromonospora sp. L5] gi|302567369|gb|ADL43571.1| DNA polymerase III, beta subunit [Micromonospora aurantiaca ATCC 27029] gi|315407439|gb|ADU05556.1| DNA polymerase III, beta subunit [Micromonospora sp. L5] Length = 377 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 172/392 (43%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV V+L+ DG L++ E+ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQVSGFDYEVSSQVTVEVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+ VS LL +I + L +G + + G + F L + P ++P+ Sbjct: 61 GDADGAALVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ + V + A +E + G+ ++ + +ATD +R Sbjct: 117 LPEMPESAG-TVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGS--TMAMLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 LA+ E++ ++ + +VP + + + + L V ++LS E I + + Sbjct: 174 LALREMEWNPDDPEISLNALVPARTLHDTAKALGPLGGHVTMALSSGGAGEGMIGFSGGT 233 Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+DG +P +++ P ++ E RV L + V RV++++ R V LS S+D Sbjct: 234 RRTTSRLLDGANYPPVRSLFPADHNAEARVAVAALIEVVKRVALVA-ERTTPVLLSFSAD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + +A E+M ++ P+ I FN +YL++ + N+ + + R + Sbjct: 293 GLVVEAGGTEEARASEAMEATFSGEPLTIGFNPQYLIDGLANLGAQH-----ALLRFVDA 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + Y++MP+R+ Sbjct: 348 FKPAVISPAGEDGEVIP----GYRYLIMPIRV 375 >gi|260584258|ref|ZP_05852005.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC 700633] gi|260157776|gb|EEW92845.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC 700633] Length = 385 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 101/396 (25%), Positives = 179/396 (45%), Gaps = 27/396 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R L+ L R I K TIP+ + L + + + S E+ I +P Sbjct: 1 MKFSINRQAFLKNLADVQRAIPSKTTIPILTGIKLVVSQEGITLTGSDSEVSIEIFLPVE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A +IV+KL +F E + I+ G + F L Sbjct: 61 HEELQLSIVETGSIVLPARFFGEIVKKLPQN---TFTLETNEQLQATITAGSAAFTLNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P E E + L + + ++ +T A++T E R L GI I LK A Sbjct: 118 SAHDYPQLPEVEKDHVLTLPVPLFRQVILQTSIAVSTAESRPILTGIHMVIANNQLK--A 175 Query: 174 VATDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ + + A I +P K + E+ RI+ + ++ +++E+++ Sbjct: 176 VATDSHRLSQRIIPLEMPETSNALTFEITLPGKTLIELSRIIDGLE-TIDFAITENQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLS 289 E+LS RL++G +P+ +I + + V ++L AVDR S+MS + LS Sbjct: 235 QTETLSFYSRLLEGRYPDTDRLINDQFNTAITVVASDLVAAVDRASLMSHTDKNNIATLS 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ +++ +T ++P++GK E + V Y +D+ FN YL + + S E Sbjct: 295 INENRILLTGNSPEIGKVEEEITVENYEGASLDVSFNPDYLKDALRLFGSS-----EATI 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +N + KD S D + ++ P+R Sbjct: 350 QFLEANRPFTLTLKDNHS----DIPYSFIQLVTPVR 381 >gi|28209865|ref|NP_780809.1| DNA polymerase III subunit beta [Clostridium tetani E88] gi|28202300|gb|AAO34746.1| DNA polymerase III, beta chain [Clostridium tetani E88] Length = 367 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S + E + A + + K+T+P+ + ++A + L + S ++ I + A Sbjct: 1 MKIFCNKSILQESISIAQKAVTGKSTMPILQGIFIKAENNSLTLIGSDIDLSIETIMDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI + + + +I+RKL + K+N + I S F L EFP Sbjct: 61 VIEEGSIVIDSKIFGEIIRKLPNDVIEITSKDN---NIIEIKCQKSKFNLVHMSADEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + ++LKN+V T FA + EE R L G+ F I ++ L L VA DG+R Sbjct: 118 LPKINENIIFSIPEALLKNMVRGTIFATSQEETRPILTGLLFEIKDKILNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV I ++ S ++P K + E+ +ILS D V ++ + + I +I + R Sbjct: 176 LAVKSEIIDSE--NSISAVIPGKTLNEVSKILSENDEKVNITFTPNHILFSIGKTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTV 299 L++G+F NY+++IP + ++ + ++R S+M + +KL+++ D + +T Sbjct: 234 LLEGDFINYKSIIPKEYNLKVIAKRIKFLECIERASLMGKDGNTSLIKLNITDDSIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +G E M + ++I FN KYL++++ + +DE++ L SS S I Sbjct: 294 -NSQLGMVREEMGIILQGEDLEIAFNSKYLIDVLKVME-----EDEIILELSSSISPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ + + Y+++P+R+ Sbjct: 348 KNKEAN---------DCTYLVLPVRL 364 >gi|332668534|ref|YP_004451541.1| DNA polymerase III subunit beta [Cellulomonas fimi ATCC 484] gi|332337571|gb|AEE44154.1| DNA polymerase III, beta subunit [Cellulomonas fimi ATCC 484] Length = 376 Score = 300 bits (769), Expect = 2e-79, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 168/390 (43%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+ V+R + + + R + + +PV V ++A+ G +++ + E+ IPA Sbjct: 1 MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADSTGTIQLSSFDYEVSARSQIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VS LL +I R L D GT+V ++ G S F L + P ++P Sbjct: 61 DVAEPGTVLVSGRLLAEISRALPDKP----VDVVLDGTKVVVTCGASRFTLLTMPVEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + L + V + A + ++ L G+ I E K+ +ATD + Sbjct: 117 SLPVMPATAG-TVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGE--KVTLLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSES----RIHLNIES 234 RLA+ E+ + ++ +V + + + + L S SV V+LS I Sbjct: 174 RLALRELTWKPSAPDISTVALVRARTLSDAAKSLGSA-GSVTVALSTGAGVDLIGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+DG++P + + P V+ L +A RV++++ R ++L+ + + Sbjct: 233 RQTTSLLVDGDYPAVRRLFPDETPIHAIVSTHALAEAAKRVALVA-ERNTPIRLAFTQGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ + + FN ++LL+ + + + V N Sbjct: 292 VVLDAGQGDDAQASEALEATLVGDDITVAFNPQFLLDGLGALDTT-----FVRLSFTHPN 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G++ D+K Y+L+P+R Sbjct: 347 KPVEFTGQES---LEGDDKQEYRYLLVPIR 373 >gi|297582340|ref|YP_003698120.1| DNA polymerase III subunit beta [Bacillus selenitireducens MLS10] gi|297140797|gb|ADH97554.1| DNA polymerase III, beta subunit [Bacillus selenitireducens MLS10] Length = 380 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 88/378 (23%), Positives = 176/378 (46%), Gaps = 23/378 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T++R ++ + + I + TI + + + A+ + + S ++ I IP Sbjct: 1 MKFTIQRDAFVQSVADVSKAISPRTTIQILTGIKIVADQDGITLTGSDSDLSIESFIPKE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A D+++KL + + + I+ G S F + Sbjct: 61 KDGEELVNIQEEGSIVLQARFFGDMIKKLPETSIEVAVND---QFIAQITSGGSVFNING 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E F + ++LK L+ +T FA+++ E R L GI +H+ ED L Sbjct: 118 IDPDEYPRLPDVEEADLFRMPKNLLKTLIRQTAFAVSSVETRPILTGIHWHL--EDSVLT 175 Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ATD HRLA+ + ++++P K + E+ +IL+ D ++V ++ ++I Sbjct: 176 CTATDSHRLAMRMAKVDDNENNLSFSNVVIPGKTLTELNKILNDTDELLEVVVAGNQILF 235 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288 + + RL++G +P +N+IP + +++ L A++R ++S + V + Sbjct: 236 KGDYFLLYSRLLEGNYPATKNMIPTGSKTSVKLETKRLLDAIERALLLSREGKNNVVHVK 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L S +L +T P++GK E + + Y + I FN K L++ + + + EV Sbjct: 296 NLESGELEITSVTPEVGKVTEHVTTMSYEGDELKISFNGKNLIDALRVMEAS-----EVH 350 Query: 348 FRLDSSNSSVFIRGKDKD 365 + S ++ D+D Sbjct: 351 INFTGAMSPFVLKPIDED 368 >gi|315640355|ref|ZP_07895471.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus DSM 15952] gi|315483891|gb|EFU74371.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus DSM 15952] Length = 376 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 96/393 (24%), Positives = 181/393 (46%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T+ R ++ L R I K TIP+ V +Q + L + S +I I + A Sbjct: 1 MKVTLHRGTFIQELQTVQRAISSKTTIPILTGVKIQLSHQGLTLTGSNADISIETFLSAT 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A +IVR+L + EN +V I+ G ++F + Sbjct: 61 NEKANMQIEQTGAIVLQARFFGEIVRRLPEETFTLEVIEN---NQVLITSGKASFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + VL L+ T FA++ E R L G+ + +L A Sbjct: 118 DADNYPHLPVVETNQQLTIPVEVLNQLISETVFAVSQHESRPILTGVHMTLKNN--QLVA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + +Q + I++P K++ E+ R L+ D + +S+ E+++ E Sbjct: 176 VATDSHRLSQRTIPLESQ-SDQIDIVIPGKSLTELSRSLAETDEQIDISIMENQVLFETE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + L A++R S++S R VKLS++ Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPTSFNTEIEFSVPALLAAIERASLLSHEGRNNIVKLSITD 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + ++P++GK ES++ + P+DI FN Y+ + D + + Sbjct: 295 QDVILYGNSPEVGKVEESLSYDKVSGDPLDISFNPDYMKAALRAFG-----DTTIAIKFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + + + ++ P+R Sbjct: 350 SAIRPFTLEPTE--------GQASFIQLITPVR 374 >gi|239916573|ref|YP_002956131.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665] gi|281414963|ref|ZP_06246705.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665] gi|239837780|gb|ACS29577.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665] Length = 374 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 165/386 (42%), Gaps = 19/386 (4%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K TVER + + + A R + + +PV +L+ A G++ I + E I A V Sbjct: 5 KFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEADV 64 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G + VS LL DIVR L G +V ++ S F L + P ++P+ Sbjct: 65 ETAGQVLVSGRLLNDIVRSLPQAQVTVELD----GGKVLVTCRSSRFSLATMPVGDYPAL 120 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + + + V + A + ++ L + I + + +ATD +RL Sbjct: 121 PELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGD--TITFLATDRYRL 177 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 A+ E+ + S+++ + + E+ + L S D + + + + + Sbjct: 178 AMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+DGE+P +++ P S+ + V+ L +A RV++++ R A+++ + ++ + Sbjct: 238 VLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLDA 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D A ES+ + + FN YL E + + +V F S+ + Sbjct: 297 GTGDDASANESVPCTLEGEDITVAFNPSYLSEGLAVVD-----QPQVRFAFTSAPKPALL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G +++ D Y++MP+RI Sbjct: 352 TGVNQEDGVVSD----YRYLVMPVRI 373 >gi|330813296|ref|YP_004357535.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp. IMCC9063] gi|327486391|gb|AEA80796.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp. IMCC9063] Length = 371 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 127/387 (32%), Positives = 220/387 (56%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R IL+ L H ++E+KNT+P+ +VL++A D ++I A+ +I IT I A Sbjct: 1 MEIKIDRDIILKCLNHIQGVVEKKNTLPILANVLIEAFDNKIQISATDLDIIITEKIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T +A +LYD++RKL G+ I +N+ + + G S+F L P SEFP Sbjct: 61 VIKEGSTTTTAQVLYDLIRKLPAGSGIHLNLQNDK--RLKLISGKSDFNLTCLPASEFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179 ++ E+ S L L+ +T F+++ +E R+YLNGI+ H EED KL AVATDGH Sbjct: 119 LEDSIESDYLEVKSKYLLKLLNKTKFSISNDETRHYLNGIYLHKPEEDNSKLIAVATDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RL+ ++ + K +I+P+K + EI+ I+S + D+ +K+ S+I I+ + + Sbjct: 179 RLSKTQITVDEN-KKFHPVILPKKTIFEIINIISDEPDTPIKILSVRSKIKFIIKDIVLI 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG+FP+Y+ VIP KE+ N + AVDR+ +S+ R +K+++ + K+ Sbjct: 238 SKVIDGKFPDYEKVIPSDTRKEVLANVADFISAVDRIKSLSADRKGVIKINIENHKIRFF 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G+ IE ++ Y ++I FN YL++I + I D+ + + + S + Sbjct: 298 INDTSSGEGIEEISAVYEGDNLEIGFNSGYLMDIANCIQ-----DENITLKPKDATSPII 352 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + ++ YV+MPMR+ Sbjct: 353 IKDQ---------KDPDSTYVVMPMRV 370 >gi|311742164|ref|ZP_07715974.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum DSM 15272] gi|311314657|gb|EFQ84564.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum DSM 15272] Length = 380 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 165/395 (41%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + R + + ++PV +L++A+ L + E +PA Sbjct: 1 MKFRIDRDTFADAVAWTARSLPLRPSVPVLAGLLVEASAEGLTLSGFDYETSTRATLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G VS LL +IV+ L + GT+VN++ G + F LQ+ P E+P Sbjct: 61 VSDEGRALVSGRLLSEIVKSLPNKP----IDVALDGTKVNLTCGSARFALQTMPVEEYPR 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + + V++ A +E+ L GI + + L +ATD R Sbjct: 117 LPQMP-TATGTVKADLFATAVQQAGAAAGRDEMLPLLTGIRLELEGSTISL--MATDRFR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNI-- 232 ++ ++D + + +VP K + E R L S + V++S + I Sbjct: 174 ASLRDLDWYPEASDLSAQALVPAKVLNETARSLQSG-GDITVAVSSGQTGDGLIGFEGVV 232 Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL++G+FP + + + VN ++V RVS+++ R V+L+ Sbjct: 233 GNGTRRTTTRLLEGDFPRVRQLFQAQAETVAYVNTQEFVESVKRVSLVA-ERNTPVRLTF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + L + + D +A ES+ + I FN YLLE + +S D V Sbjct: 292 ADGVLLLEAGSGDEAQASESLEATIEGNDISIGFNPGYLLEGLGVMS-----DPVVHLSF 346 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G + + Y++MP+R+ Sbjct: 347 TQHTKPAAISGVGE---TGAEPDGAFRYLIMPVRL 378 >gi|258513368|ref|YP_003189590.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM 771] gi|257777073|gb|ACV60967.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM 771] Length = 367 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 103/385 (26%), Positives = 199/385 (51%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++L + + + K+ +P+ +L +A D L ++A+ E+ I +P Sbjct: 1 MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLPVK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + + + DI+R+L D + F+ N+ + I + +S + F EFP Sbjct: 61 VIETGEIVLPSKYIIDIIRRLPD--TVIEFESNDYLNSITIKYKNSQANIHGFAADEFPM 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++F +++S+ K ++ +T FA T+E R GI F I E++ K+ VATD HR Sbjct: 119 LPPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ + ++P IIVP K + E+L+IL+S D +K++++E++I + +++ Sbjct: 177 LAMITEHLPLIKQELPGIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI G++PNY +VIP ++++ ++ Q+V+R S++SS Q +++ + + Sbjct: 237 RLIKGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIVIS 296 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G E + V++ + I FN KYL++ + + S +E+ L + + Sbjct: 297 SNNEAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDS-----EEIYLELSGPINPCLL 351 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 R +D+ N +L+P+R Sbjct: 352 RTEDR----------NYLSILLPVR 366 >gi|331086958|ref|ZP_08336034.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] gi|330409619|gb|EGG89058.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA] Length = 369 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 184/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A +++ A+ E+ I I + Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D I E + I+ + F + +F Sbjct: 61 ILQKGIIALDAKIFSEIVRKLPDNEVI---IETNSNLQTLITCEKAKFNISGKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++ +T F+++ + ++G F +++ LK+ V+ DGHR Sbjct: 118 LPYIEKKDCITLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + + ++VP K + EI +ILS + +S V + + + I + + Sbjct: 176 ISIRKIELK-ESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R+N L +DR +++ + + ++++ + + + Sbjct: 235 RLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQLK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + + I FN K+L++ + I D+EV ++ + F Sbjct: 295 IQSQ-IGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + + Y+++P+ Sbjct: 349 I----------KDEEQSYIYLILPV 363 >gi|213966240|ref|ZP_03394424.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46] gi|213951092|gb|EEB62490.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46] Length = 396 Score = 300 bits (768), Expect = 3e-79, Method: Composition-based stats. Identities = 86/401 (21%), Positives = 165/401 (41%), Gaps = 30/401 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I + D+ + R + + T P+ ++ A+D L++ E+ I A V Sbjct: 7 RIRAAKDDLAGAVSWVARNLPARPTQPILRGMIFLADDNGLQLAGYDYEVSTQIRISAEV 66 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G V+ L+ DIV KL + F GT+V + G S F L S ++P Sbjct: 67 DEPGRFAVNGKLVSDIVSKLPNKQVEMHFD----GTKVIVRCGSSRFELPSLTLEDYPQL 122 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + + +++L + + A +E L GI ++ L ATD RL Sbjct: 123 PEAP-AATGTVDAALLAEAIGQVAVAAGKDESLPMLTGIRMETEGNEVTL--AATDRFRL 179 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR----------IHL 230 AV + +++P K E R L + V ++ + + + Sbjct: 180 AVRSFEWEQVPEGETKLLIPAKTFAETARTLDTTSSEPVTLAFGDGSDDREVGSEGLLAI 239 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + + RL+D EFP ++ ++P + L+ A+ RVS+M+ +++ Sbjct: 240 LADPRRTTTRLLDAEFPKFRPLLPKQHSSMAVARVDQLQDAIRRVSLMA-DHGAQIRMDF 298 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S ++ ++ ++G A E++ + P+ I FN +YLLE + + S V+ Sbjct: 299 SDGQVVLSAHGDEVGHAEETVACNFYGEPLLIAFNPQYLLEGLSAVRSH-----RVLLGF 353 Query: 351 DSSNSS-VFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + + I + + +D + + Y+LMP+R+ Sbjct: 354 TQPSRPAILIPEPEAIPELGEDGFYPTPETDFTYLLMPVRL 394 >gi|226326147|ref|ZP_03801665.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758] gi|225205689|gb|EEG88043.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758] Length = 369 Score = 299 bits (767), Expect = 3e-79, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 184/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD+++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIRCLKSDLVKGVSIVSKAVPTKTTMPILECILIDATTDIIKLTANDMELGIETVIRGQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G I + A + DIVRKL D + E+ + + I+ + F + +F Sbjct: 61 IDEKGMIALDARIFSDIVRKLPDNEIVI---ESGVNFQTLITCEKAKFNISGKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F +N + LK+ V+ DGHR Sbjct: 118 LPYIERENPVSISQFTLKEVIRQTIFSIADNDSNKLMTGELFDMNGDILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + + I+VP K + E+ +ILS + DS V++ + + I + + Sbjct: 176 ISIRKIELK-ESYEPKKIVVPGKTLIEVSKILSGEADSEVRLYFTANHIVFEFDDTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + ++R+N L +DR +++ + + +++ + + + Sbjct: 235 RLIEGEYFRIEQMLSNDYETKVRINKRELLNCIDRATLLVKEGDKKPIIINIQDEMMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + + G E + + + I FN K+L++ + I D+E ++ + F Sbjct: 295 IKS-EKGTMDEEIMITKEGKDLLIGFNPKFLIDALRVID-----DEEADLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + Y+++P+ Sbjct: 349 I----------KDEGESYVYLILPV 363 >gi|256820579|ref|YP_003141858.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271] gi|256582162|gb|ACU93297.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271] Length = 374 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 106/386 (27%), Positives = 177/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL DI++ + KEN + + IS N+ L EFP Sbjct: 61 SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + VL V++T FA +++R ++GI F +E L V TD H+ Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + + + I+P+K + + IL+ ++ V V +ES + + + R Sbjct: 176 L-VKYERLDIKANEAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY VIP N +L +N + +++R+S+ S+ V+L ++ L ++ + Sbjct: 235 LIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D K E Y ++I FN K+L E+I+N+ S DE++ + N + I Sbjct: 295 DVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDS-----DEILIEMSLPNRAGLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + MP+ + Sbjct: 350 TPVD-----GLDEGEKVLMLAMPIML 370 >gi|225575692|ref|ZP_03784302.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM 10507] gi|225037096|gb|EEG47342.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM 10507] Length = 369 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 183/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++ + + A + + K T+P+ +L+ A ++ + E+ I + + Sbjct: 1 MKIICSKSNLSKGVNIALKAVPSKTTMPILECILIDATANQIKFVTNDMELGIETMVDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +I+RKL D ++ +++L T I+ + F + +F Sbjct: 61 ISEKGMIALDAKIFSEIIRKLPDN-DVTIQTDDKLNT--LITCEKAKFNIPGKSGEDFVY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK ++ +T F++A E + G F I + LK+ V+ DGHR Sbjct: 118 LPMIERDASITLSQFTLKEMIRQTIFSIAVNENNKLMTGELFEIKDNYLKI--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A+ +++ IIVP K + EI +ILS + D V + +++ I + + Sbjct: 176 IAIRRMELAKDYEDR-KIIVPGKTLNEISKILSGEVDDQVTIYFTKNHILFEFDQTLVLS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + +L++N +DR +++ + + ++++ + +T Sbjct: 235 RLIEGEYFRIDQMLSSDYETKLKINKKEFLSCIDRATLLVREGDKKPIIINITDTSMVLT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ MG E +++ + I FN K+L++ + I D+E+ L + + F Sbjct: 295 IDSA-MGSMDEEIDIVKEGKDILIGFNPKFLIDALRVID-----DEEITIYLVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+K + Y+++P+ Sbjct: 349 I----------KDDKGSYTYLILPV 363 >gi|315223688|ref|ZP_07865538.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga ochracea F0287] gi|314946263|gb|EFS98262.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga ochracea F0287] Length = 374 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 177/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI VSA LL DI++ + KEN + + IS N+ L EFP Sbjct: 61 SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + VL V++T FA +++R ++GI F +E L V TD H+ Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + + + I+P+K + + IL+ ++ V + +ES + + + R Sbjct: 176 L-VKYERLDIKANEAADFIMPKKPLNILKGILAGSETEVTIEYNESNAKFSFDDMEFICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY VIP N +L +N + +++R+S+ S+ V+L ++ L ++ + Sbjct: 235 LIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D K E Y ++I FN K+L E+I+N+ S DE++ + N + I Sbjct: 295 DVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDS-----DEILIEMSLPNRAGLI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + MP+ + Sbjct: 350 TPVD-----GLDEGEKVLMLAMPIML 370 >gi|256831257|ref|YP_003159984.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603] gi|256684788|gb|ACV07681.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603] Length = 376 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 170/389 (43%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK VER + E + R + + PV V ++A +G++++ + E+ G IPA Sbjct: 1 MKFRVERDVLTEAVTWTARTLPARPPAPVLSGVRIEATQEGVVKLASFDYEVSARGEIPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+I VS LL +I + L GT+V++ G S F L + P E+P Sbjct: 61 EVTEPGTILVSGRLLAEIAKALPHKPVDFTVD----GTKVSVVCGASRFSLLTMPVEEYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + S + V + A + ++ L G+ I E K+ +ATD + Sbjct: 117 TLPTMPELTGVVDGSELSA-AVSQVTVAASRDDTLPLLTGVRIEIEGE--KVTLLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSS-KDSSVKVSLSES--RIHLNIESL 235 RLA+ E+ M ++ +V + + ++ + L D +V +S+ E I Sbjct: 174 RLALREMTWRPSAPDMSTVALVRARTLNDVSKSLGPVGDVNVALSVGEGVDLIGFEAGGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + L+DG++P+ + + P V L A RV++++ R ++L+ S ++ Sbjct: 234 QTTSLLVDGDYPHVRRLFPDETPIHAVVATQPLIDAARRVALVA-ERNTPIRLNFSEGQV 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D +A E + + + FN ++LL+ ++ + + D V N Sbjct: 293 VLDAGQGDDAQASEVLESTLVGEDISVAFNPQFLLDGLNALGT-----DFVRLSFTHPNK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G++ + ++ + Y+L+P+R Sbjct: 348 PVEFTGQES---LDGEDSKHYRYLLVPIR 373 >gi|325663384|ref|ZP_08151834.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] gi|325470838|gb|EGC74068.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA] Length = 369 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 184/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A +++ A+ E+ I I + Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D I E + I+ + F + +F Sbjct: 61 ILQKGIIALDAKIFSEIVRKLPDNEVI---IETNSNLQTLITCEKAKFNISGKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++ +T F+++ + ++G F +++ LK+ V+ DGHR Sbjct: 118 LPYIEKKDCITLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + + ++VP K + EI +ILS + +S V + + + I + + Sbjct: 176 ISIRKIELK-ESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R+N L +DR +++ + + ++++ + + + Sbjct: 235 RLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQLK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + + I FN K+L++ + I D+EV ++ + F Sbjct: 295 IQSQ-IGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + + Y+++P+ Sbjct: 349 I----------KDEEQSYIYLILPV 363 >gi|315187336|gb|EFU21092.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6578] Length = 367 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ER ++++ + A II KN + + +VLL A D L I+A+ ++ + P Sbjct: 1 MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSKLTIRATDLKVGFETSSPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV L I+R L GA + F + + NF L++ ++P Sbjct: 61 VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 F + S L ++ T FA++ +E RY++NG+F E+ L + VATDG R Sbjct: 120 MP-LHGDSYFSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E ++ + +I+P K + ++L + V ++ E + L + +S Sbjct: 177 LAYIEKEVDGGVPDFNGVIIPPKILHLARKLLP-GEGMVDFAIGEKHVFLRYGDVYLSSN 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G FP Y+ VIP + +A+ RVS++ + + V L++ L + + Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVRSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E + Y + + I NY YLLE + + +++V + ++ +R Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVM-----TEEQVEIAFTEPSRAITVR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + F+++MPM++ Sbjct: 351 PV---------PEREFFHIVMPMQL 366 >gi|163784003|ref|ZP_02178965.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159880725|gb|EDP74267.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 365 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 93/383 (24%), Positives = 187/383 (48%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T++++ + ++L A E+K+ +P+ + LL+A DG L ++ + E+ + ++ A Sbjct: 1 MELTIDKTTLQDVLRKAISATEKKSALPILSNFLLEAKDGKLIVEGTDLEVHVKISVFAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V+A L DI R L + + + I G + + L + ++P Sbjct: 61 VEEEGKACVNAKKLTDIARLLPSETVHIKTDD----SSLKIKSGKTKYSLPTVAPEDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +F ++ + L+N + +T +A + EE RY L G F + + VATDGHR Sbjct: 117 MYPFPEDTAFLISGADLQNAINKTLYAASKEESRYALQGDLF--KSRNNHIDVVATDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ Q+ +++P+K++ E+ ++L+ + V+++ +E + + R Sbjct: 175 LALYIIEREGQLDTNVEVVIPQKSLNELRKLLTGAE-DVEMAATEQYAFFKTKEWILMTR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FP+Y VIP E+ ++ +AV RVS + + +K +L + L + Sbjct: 234 LLEGAFPDYTQVIPDEFSIEIILDKKETLEAVKRVSAVVEGDTKPIKFTLKPNVLELRSF 293 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + G+A++ + V Y I FN KY++E I + V DD+ + + NS + Sbjct: 294 SQEYGEAVDEIEVQYEGEEFTIGFNAKYIIEAI-----EVVDDDKFYMKFTNPNSQTMVE 348 Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383 + + ++MPM Sbjct: 349 PIENN---------RYKAIIMPM 362 >gi|294338442|emb|CAZ86768.1| DNA polymerase III, beta subunit [Thiomonas sp. 3As] Length = 371 Score = 299 bits (767), Expect = 4e-79, Method: Composition-based stats. Identities = 121/390 (31%), Positives = 208/390 (53%), Gaps = 27/390 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++T R ++L+LLG I+ER+ T+P+ +VL+Q N S E++I +V Sbjct: 3 RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFITSDMEVQIRLQAGGAV 62 Query: 62 D---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +ITV+ L DI+R G + + ++ + S F LQ+ P +F Sbjct: 63 QTSAEDAAITVNMRKLLDILRAASPGNVTLEWSDG----KMTVRAAKSRFSLQTLPAEDF 118 Query: 119 PSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P + ++ L +LK L+ THFAMA +IRYYLNG+ + + + + L VAT Sbjct: 119 PLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--VAT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235 DGHR+ +A + + + II+PRK V E+ R+LS +D + ++L+ ++ L ++ L Sbjct: 177 DGHRMTLATAPLEKAVERRE-IILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDGL 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +LI+G+FP+YQ V+P + L+V T L+ A+ RV+I+++ + + V+++L L Sbjct: 236 EFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGLL 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T N + +A E ++V Y ++I FN YL++ + N++S D++ L NS Sbjct: 296 RLTSINAEQEEAQEEIDVDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDGNS 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S D+ N YV+MPMRI Sbjct: 351 SALFTMPDEP---------NFKYVVMPMRI 371 >gi|270308396|ref|YP_003330454.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS] gi|270154288|gb|ACZ62126.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS] Length = 378 Score = 299 bits (766), Expect = 4e-79, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 173/392 (44%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS TV A LL + V L + N +NI + +FP Sbjct: 61 IEEEGSTTVPAKLLTEFVSSLPNDKIELNL--NAKSKALNIKCARFEARITGVDAKDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S ++ + V FA AT+E R L G+ L L A DG R Sbjct: 119 VPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTL--AAADGFR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237 LAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ + Sbjct: 177 LAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------S 291 +L+ G FP Y +IP S ++ V+ A +I + V+L + + Sbjct: 237 VSQLVQGNFPQYSQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNT 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|227550641|ref|ZP_03980690.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257896288|ref|ZP_05675941.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|293379369|ref|ZP_06625513.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1] gi|227180242|gb|EEI61214.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330] gi|257832853|gb|EEV59274.1| DNA polymerase subunit III [Enterococcus faecium Com12] gi|292641892|gb|EFF60058.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1] Length = 376 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 99/393 (25%), Positives = 184/393 (46%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ R+ ++ L R I K TIP+ V + L + S +I I + Sbjct: 1 MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + A +I+R+L + EN+ +V I+ G +NF + Sbjct: 61 NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +L VL L+ T FA++ E R L G+ F ++ D L A Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + Q A I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLSQRVIPVE-QTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + + A++R S++S R V+LS+ Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK ES++ N P++I FN Y+ + D + + Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASNGDPLEISFNPDYMKAALRAFG-----DMSIKVKFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + V ++ P+R Sbjct: 350 SAIRPFTLEPTED--------GVQFIQLITPVR 374 >gi|327475233|gb|AEA77211.1| DNA polymerase III beta subunit [Bacillus sp. 15.4] Length = 361 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 89/378 (23%), Positives = 175/378 (46%), Gaps = 30/378 (7%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--------ASVDVCGSITV 69 + + + TIP+ + + A D + + S +I I IP V G I + Sbjct: 1 MKAVTSRTTIPILTGIKIIATDEGVTLTGSDSDISIESFIPTEEDGNEIVEVIEKGGIVL 60 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 A +IV+KL E + + I G + F L E+P + E + Sbjct: 61 QAKFFSEIVKKLPMDTV---EIEVQNHLQTVIRSGKAEFNLNGLDPEEYPHLPQIEEGNA 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F++ + +LK +V +T FA++T E R L G+ + + E+ +L +ATD HRLA+ + + Sbjct: 118 FKVPTDLLKTMVRQTVFAVSTSETRPILTGVNWRV--ENGELSCIATDSHRLAMRKAPLE 175 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 + +I++P K++ E+ +IL V++ ++++++ + L RL++G +P+ Sbjct: 176 SDTGNEYNIVIPGKSLTELSKILDDNSEPVEIVITDNQVLFKAKHLLFFSRLLEGNYPDT 235 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDNPDMGKA 307 +IP + EL + QA+DR S+++ R VKL ++ S + ++ + P++GK Sbjct: 236 SRLIPNESKTELVLATKEFLQAIDRASLLAREGRNNVVKLSTVESGVIEISSNTPEIGKV 295 Query: 308 IESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 IE + + I F+ KY+++ + + E+ D + I+ DS Sbjct: 296 IEQVQSQSNEGEELKISFSAKYMMDALKALEGTEIHID-----FTGAMRPFVIKPLHDDS 350 Query: 367 KNNKDNKVNAFYVLMPMR 384 +++P+R Sbjct: 351 I---------LQLILPVR 359 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 2/143 (1%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + ++ + T P+ V + +G L A+ P D Sbjct: 118 FKVPTDLLKTMVRQTVFAVSTSETRPILTGVNWRVENGELSCIATDSHRLAMRKAPLESD 177 Query: 63 V--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +I + L ++ + L D ++ + H L + Sbjct: 178 TGNEYNIVIPGKSLTELSKILDDNSEPVEIVITDNQVLFKAKHLLFFSRLLEGNYPDTSR 237 Query: 121 TKEEEYVYSFELASSVLKNLVER 143 E LA+ ++R Sbjct: 238 LIPNESKTELVLATKEFLQAIDR 260 >gi|57234032|ref|YP_181940.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195] gi|57224480|gb|AAW39537.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195] Length = 378 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 173/392 (44%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS TV A LL + V L + N +NI + +FP Sbjct: 61 IEEEGSTTVPAKLLTEFVSSLPNDKIELNL--NAKSKALNIKCARFEARITGVDAKDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S ++ + V FA AT+E R L G+ L L A DG R Sbjct: 119 VPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTL--AAADGFR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237 LAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ + Sbjct: 177 LAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------S 291 +L+ G FP Y +IP S ++ V+ A +I + V+L + + Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNT 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 297 PGKLTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKAQ-----QVSLEVT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|297205284|ref|ZP_06922680.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus jensenii JV-V16] gi|297149862|gb|EFH30159.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus jensenii JV-V16] Length = 386 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 98/392 (25%), Positives = 182/392 (46%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ L+ L + R I + TIP+ + + ++ L + S +I I IP S Sbjct: 11 MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 70 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +I++KL F E + G + IS +S F + + Sbjct: 71 ADLTVESTGSIVLPARFFNEIIKKLPGKD---FSFEVKEGLQTQISSENSEFTINGLDAN 127 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +FE++ + ++ T+FA++T+E R L G+ F K+ AVAT Sbjct: 128 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVF--NQAKIKAVAT 185 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ +D+ +I+P K++ E+ RI+ +D V V+ ++++ I ++S Sbjct: 186 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 245 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293 RL++G +P+ ++P ++ + +L QA+DRVS+++ + R VKL+L + Sbjct: 246 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 305 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + D+P++G E ++I FN YL + + D V+ Sbjct: 306 VAQLEGDSPEIGTVEEKPWAKQITGQNLEISFNPDYLQAALRA-----SITDTVIMNFTE 360 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D + ++ P+R Sbjct: 361 PLRPFTVVPGKEDVE--------FIQLITPVR 384 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 30/183 (16%), Positives = 71/183 (38%), Gaps = 8/183 (4%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 E + F + ++ + + A+++ L+GI ++ E+L L TD Sbjct: 8 EDIMKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKI 67 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 V + SI++P + EI++ L KD S +V + ++ E+ ++ +D Sbjct: 68 PVSADLTVESTGSIVLPARFFNEIIKKLPGKDFSFEVKEG-LQTQISSENSEFTINGLDA 126 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSDKLCMTV 299 NY + +++ ++ R+ ++ + S + V + K+ Sbjct: 127 N--NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIKAVA 184 Query: 300 DNP 302 + Sbjct: 185 TDS 187 >gi|315605506|ref|ZP_07880543.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 180 str. F0310] gi|315312773|gb|EFU60853.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 180 str. F0310] Length = 378 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 173/392 (44%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A+ L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKADGDELTLSSFDYEVSANSHIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + VS LL DI + L G +VN+ G S+F L P E+P Sbjct: 61 VDEAGEVLVSGRLLADISKSLPSKP----VSVELDGQKVNLVCGSSHFTLAVMPLDEYPL 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +S++ V + A + ++ L G+ IN + L +ATD +R Sbjct: 117 LPAQPTGIGAIDSSTLS-QAVSQVSIAASRDDTLPLLTGVRIEINGPSITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232 LA+ E+D + I +V + + ++ + ++S + V+V LS S I Sbjct: 174 LAMRELDWEPTDTSIEEIALVKARILQDVAKSMTSG-AKVEVGLSGETQPGASSLIGFTA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + L+DG++P + + P S + V+ L +AV R+S+++ R +V+L+ + Sbjct: 233 SGRRTTSTLMDGDYPAVRRLFPESTPIQAVVDRHALLEAVKRMSLVA-ERKTSVRLAFTE 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +L + D +A E++ + + FN ++L++ + + + D V F Sbjct: 292 GQLVLEAGQGDNAQASEAIEASLHGDDISTAFNPQFLIDGLQVLDT-----DFVRFGFTH 346 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S I G+ K ++ Y+LMP+R Sbjct: 347 STKPAVITGQ---RKVDEGEVTQFRYLLMPIR 375 >gi|257888094|ref|ZP_05667747.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733] gi|257899272|ref|ZP_05678925.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|293572719|ref|ZP_06683683.1| DNA polymerase III, beta subunit [Enterococcus faecium E980] gi|257824148|gb|EEV51080.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733] gi|257837184|gb|EEV62258.1| DNA polymerase subunit III [Enterococcus faecium Com15] gi|291607211|gb|EFF36569.1| DNA polymerase III, beta subunit [Enterococcus faecium E980] Length = 376 Score = 299 bits (766), Expect = 5e-79, Method: Composition-based stats. Identities = 98/393 (24%), Positives = 184/393 (46%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ R+ ++ L R I K TIP+ V + L + S +I I + Sbjct: 1 MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + A +I+R+L + EN+ +V I+ G +NF + Sbjct: 61 NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +L VL L+ T FA++ E R L G+ F ++ D L A Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + Q A I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLSQRVIPVE-QTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + + A++R S++S R V+LS+ Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK ES++ + P++I FN Y+ + D + + Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLEISFNPDYMKAALRAFG-----DMSIKVKFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + V ++ P+R Sbjct: 350 SAIRPFTLEPTED--------GVQFIQLITPVR 374 >gi|86606304|ref|YP_475067.1| DNA polymerase III subunit beta [Synechococcus sp. JA-3-3Ab] gi|86554846|gb|ABC99804.1| DNA polymerase III, beta subunit [Synechococcus sp. JA-3-3Ab] Length = 454 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 87/417 (20%), Positives = 176/417 (42%), Gaps = 50/417 (11%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIPAS 60 T E++++ L R + + +PV +VL++A + + A + I A Sbjct: 51 FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFEAE 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G T+ A LL DIV +L G V ++ + L+ P E+P+ Sbjct: 111 VKGSGRTTLPAKLLSDIVSRLPSGPIGLSQVPESAA--VTLTSAAGQYQLRGMPAEEYPT 168 Query: 121 TKEEEY-------------VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NE 166 E EL L + +T FA + ++ + L G+ + Sbjct: 169 LPEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTG 228 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMP------SIIVPRKAVGEILRILSSKD--SS 218 + +L ATDGHRLA+ +V+ + +P + + E+ RIL ++ S+ Sbjct: 229 DPPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKLDFTIPARTLREVERILGAQTAASA 288 Query: 219 VKVSLSESRIHLNIE--------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 V++ S++ + ++ RL++G++P+Y +IP ++ + + L + Sbjct: 289 VELRFDRSQVQFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPLIE 348 Query: 271 AVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 +++RV + ++ R + +K +LS L ++ + PD+G ES+ V + +++ FN +Y Sbjct: 349 SLERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNVRY 408 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 LLE + + +V L+ + Y++MP+++ Sbjct: 409 LLEALKVFHTQ-----QVSLELNGATQPAI---------WKPIGATRLCYLVMPVQL 451 >gi|293191013|ref|ZP_06609057.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309] gi|292820700|gb|EFF79666.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309] Length = 378 Score = 299 bits (766), Expect = 6e-79, Method: Composition-based stats. Identities = 91/392 (23%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G + VS LL DI + L G +VN+ G S+F L P E+P Sbjct: 61 ADEAGEVLVSGRLLADISKSLPSKP----VSVELDGQKVNLVCGSSHFTLAVMPLDEYPL 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +S++ V + A + ++ L G+ IN + L +ATD +R Sbjct: 117 LPAQPTGVGAIDSSTLS-QAVTQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232 LA+ E+D + + +V + + ++ + ++S + V+V LS S I Sbjct: 174 LAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFTA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + L+DG++P + + P + + V+ L +AV R+S+++ R +V+L+ + Sbjct: 233 QGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVA-ERKTSVRLAFTE 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +L + D +A E++ N + FN ++L++ + + + D V F Sbjct: 292 GQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFLIDGLQVLDT-----DYVRFGFTH 346 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I G+ K ++ Y+LMP+R Sbjct: 347 PTKPAVITGQ---KKADEGEVTQFRYLLMPIR 375 >gi|288916709|ref|ZP_06411084.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] gi|288351964|gb|EFC86166.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] Length = 386 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 171/395 (43%), Gaps = 21/395 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER + + + R + + T + V +LL A L++ A E+ G + Sbjct: 1 MKFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGEVD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ +L DI R L GT + ++ G++ F L P ++ Sbjct: 61 ATVTEEGRGLVNGKMLADITRSLPAAPVDVSVD----GTRLVVACGNARFALPMLPVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + + V + A ++ L G+ I+ + L L ATD Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTL--AATDR 173 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV + + +VP + + + + LS V ++L E+ Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGTGVEVAIALGTGPSGETLAGFAG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL++G FP Y+ ++P S+ ++ L +AV RV++++ R V+L+ + Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVA-PRTAPVQLTFTP 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD- 351 D L + +A E++ V Y+ + + FN YLL+ + + SD V Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPTYLLDALGALESDIVRIGFASDEDPA 352 Query: 352 -SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++N + GK D + + Y+LMP+R+ Sbjct: 353 LAANKPAILTGKGGDDQT---EIPDYRYLLMPIRL 384 >gi|69246707|ref|ZP_00604075.1| DNA polymerase III, beta chain [Enterococcus faecium DO] gi|257878647|ref|ZP_05658300.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933] gi|257881313|ref|ZP_05660966.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502] gi|257885588|ref|ZP_05665241.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501] gi|257890530|ref|ZP_05670183.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410] gi|257893105|ref|ZP_05672758.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408] gi|258615269|ref|ZP_05713039.1| DNA polymerase III, beta subunit [Enterococcus faecium DO] gi|260558228|ref|ZP_05830424.1| DNA polymerase subunit III [Enterococcus faecium C68] gi|261206918|ref|ZP_05921607.1| DNA polymerase subunit III [Enterococcus faecium TC 6] gi|289566505|ref|ZP_06446929.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF] gi|293553548|ref|ZP_06674175.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039] gi|293563252|ref|ZP_06677704.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162] gi|293569158|ref|ZP_06680464.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071] gi|294616658|ref|ZP_06696429.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636] gi|294619746|ref|ZP_06699151.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679] gi|294623760|ref|ZP_06702588.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317] gi|314940130|ref|ZP_07847310.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04] gi|314943039|ref|ZP_07849843.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C] gi|314948157|ref|ZP_07851553.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082] gi|314953429|ref|ZP_07856347.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A] gi|314993832|ref|ZP_07859168.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B] gi|314998143|ref|ZP_07863025.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01] gi|68195121|gb|EAN09580.1| DNA polymerase III, beta chain [Enterococcus faecium DO] gi|257812875|gb|EEV41633.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933] gi|257816971|gb|EEV44299.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502] gi|257821444|gb|EEV48574.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501] gi|257826890|gb|EEV53516.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410] gi|257829484|gb|EEV56091.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408] gi|260075402|gb|EEW63708.1| DNA polymerase subunit III [Enterococcus faecium C68] gi|260078546|gb|EEW66248.1| DNA polymerase subunit III [Enterococcus faecium TC 6] gi|289161714|gb|EFD09590.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF] gi|291588127|gb|EFF19969.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071] gi|291590478|gb|EFF22216.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636] gi|291594016|gb|EFF25485.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679] gi|291596714|gb|EFF27937.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317] gi|291602303|gb|EFF32528.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039] gi|291604791|gb|EFF34273.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162] gi|313587855|gb|EFR66700.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01] gi|313591723|gb|EFR70568.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B] gi|313594532|gb|EFR73377.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A] gi|313598239|gb|EFR77084.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C] gi|313640635|gb|EFS05215.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04] gi|313645411|gb|EFS09991.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082] Length = 376 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 98/393 (24%), Positives = 184/393 (46%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ R+ ++ L R I K TIP+ V + L + S +I I + Sbjct: 1 MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + A +I+R+L + EN+ +V I+ G +NF + Sbjct: 61 NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +L VL L+ T FA++ E R L G+ F +++ L A Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILSDNS--LLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + Q A I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLSQRVIPVE-QAADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP S + E+ + + A++R S++S R V+LS+ Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294 Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK ES++ + P+DI FN Y+ + D + + Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLDISFNPDYMKAALRAFG-----DMSIKVKFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + V ++ P+R Sbjct: 350 SAIRPFTLEPTED--------GVQFIQLITPVR 374 >gi|255037469|ref|YP_003088090.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] gi|254950225|gb|ACT94925.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] Length = 374 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 176/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L ++ +P+ + LL + L + AS + + I Sbjct: 1 MKFVVSSSVLLKQLSAINGVVSTNPIVPILENFLLTLDGNSLTVTASDLQTVMITEIEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+I + A LL D +R L + GTE I + + L +FP Sbjct: 61 SSEKGAIAIPAKLLLDTLRGLPEQPITLQVNAETFGTE--IISDNGRYKLSGENPIDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T S + +S L + + T FA +T+++R + G+F + E VATDGHR Sbjct: 119 TPVVNRGQSVDFSSVALGSAISNTLFATSTDDLRPAMTGVFVQMGAESATF--VATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + S+I+ RKA+ + L S+D VK + S + ++ M R Sbjct: 177 LVRYRRTDIKSDIDT-SMIIQRKALNLLKSCLPSEDVPVKAEFTSSNAFFSFGNIRMICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID FP+Y+N IP +N L +N + ++ R+SI S+ V++ ++ + L ++ + Sbjct: 236 LIDERFPDYENAIPTNNPNTLTINRLEILSSLRRISIYSNRTTHQVRMKMALNDLVISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E + YN M+I FN K+L+E++ N+SS + F L + N + I Sbjct: 296 DLDYSNEANERLMCEYNGDDMEIGFNAKFLIEVLGNLSSKT-----ITFELSAPNRAGLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D++ + ++MP+ + Sbjct: 351 IPVDQE------ENEDILMLVMPVML 370 >gi|225851072|ref|YP_002731306.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1] gi|225645102|gb|ACO03288.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1] Length = 364 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 193/385 (50%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ ++++D+ LL A E+K+ +P+ + LL+A D L ++ + E+ ++ ++ A Sbjct: 1 MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSVFAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ V+A L DI R L ++ + + I G + + L P +FP Sbjct: 61 IENEGTACVNAKKLTDISRLLPSNEVYIKLED----STLKIKSGKTKYNLPVAPSEDFPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +F ++ L+ + +T +A + EE RY L G+ F + + VATDGHR Sbjct: 117 MYPFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGN--IDVVATDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ I +IIVP+KA+ E+ ++L+ + V+V+ ++ + + R Sbjct: 175 LALY--TIERTGKGDINIIVPQKALNELKKLLTGLE-DVEVAATDQYAFFRTKEWILMTR 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FP+Y VIP +E++++ +++ RVS + + +KL+L + L + Sbjct: 232 LLEGVFPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSV 291 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + G+A++ ++V Y I FN KYL+E ++ I DEVV + + N+ I Sbjct: 292 SVEYGEAVDELSVDYEGEEYSIGFNAKYLIEAVEVIDG-----DEVVIKFTNPNAQTLII 346 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D++ + ++MPM I Sbjct: 347 PADQEDR--------YKAIVMPMEI 363 >gi|289548994|ref|YP_003473982.1| DNA polymerase III subunit beta [Thermocrinis albus DSM 14484] gi|289182611|gb|ADC89855.1| DNA polymerase III, beta subunit [Thermocrinis albus DSM 14484] Length = 362 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 107/385 (27%), Positives = 197/385 (51%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V+R ++ E+L A E+K+ +PV + ++A DG L + A+ E + +PA Sbjct: 1 MRLYVDREELAEVLKKAQAATEKKSALPVLNNFKIKAEDGHLAVYATDLENFLFLHLPAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ V+A +++R L +E+ ++ +S G S F L EFP Sbjct: 61 VEEEGTLAVNAKKFTEVIRSLTSAEVYLHLRED----KLVVSGGRSTFKLAVADPEEFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + AS++LK +++T +A++ E+ RY L G++ H E+ K+ V +DGHR Sbjct: 117 FPEISGSAAQINASTLLK-AIDKTEYAISKEDSRYALQGLYLHRVED--KIHFVGSDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ A + S+I+PRK++ + L V + E+ H+ E+ ++SVR Sbjct: 174 LALFWTYSDADV----SVILPRKSLKVLEGFLKETVGGVSIFKDENFAHVKGENWTLSVR 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GE+P+Y +VIP ++ V+ +L ++ R+S ++ VK+S + + + Sbjct: 230 LLEGEYPDYLSVIPQDFQTQVVVDRDSLIASIKRLSAIAESSAFPVKISFMENLAVLEIT 289 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 P+ G+ + + V P++I FN KYLLE +D+ V+ V +S V + Sbjct: 290 EPEFGEGRDEVEVELEGEPVEIGFNGKYLLEALDSFDVRRVILKAV-----DPDSPVLME 344 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +D + K ++MPMR+ Sbjct: 345 SEDPE-------KDPYLCLVMPMRL 362 >gi|319954740|ref|YP_004166007.1| DNA polymerase iii, beta subunit [Cellulophaga algicola DSM 14237] gi|319423400|gb|ADV50509.1| DNA polymerase III, beta subunit [Cellulophaga algicola DSM 14237] Length = 372 Score = 299 bits (765), Expect = 6e-79, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L L + AS E ++ + Sbjct: 1 MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNQLIVSASDLETTMSSVLNVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V A LL DI++ + ++N V IS + L +EFP Sbjct: 61 SDNEGLIAVPAKLLLDILKTFPEQPLTFVVEDN---NTVEISSNHGKYALAYADGAEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S + +L + +T FA +++R ++GIFF + E L VATD H+ Sbjct: 118 AVELANPSSTTIIGDILATAINKTIFAAGNDDLRPVMSGIFFQFSPESLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + +++ I+P+K + + IL +S V + +ES + E+ + R Sbjct: 176 LVKYQRT-DISASQVAEFIMPKKPLNLLKGILGGSESDVTIEYNESNAKFSFENTELICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N L ++ L +V RVSI S+ ++L ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNVLSISRNQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L+E++ N++S D+V + N + + Sbjct: 295 DIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLANLTS-----DDVSLEMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D ++MP+ + Sbjct: 350 TPVD-----GLDEGELVTMLVMPVML 370 >gi|238061914|ref|ZP_04606623.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149] gi|237883725|gb|EEP72553.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149] Length = 377 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 172/392 (43%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER + E + + + + ++PV V+L+ DG L++ E+ + Sbjct: 1 MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQVSGFDYEVSSQVTVEVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+ VS LL +I + L +G + + G + F L + P ++P+ Sbjct: 61 GDADGAALVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ + V + A +E + G+ ++ + L +ATD +R Sbjct: 117 LPDMPESAG-TVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGGN--LAMLATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 LA+ E++ + + +VP + + + + L V ++LS E I + + Sbjct: 174 LALREMEWHPDDPEVSINALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFSGGT 233 Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+DG +P +++ P S++ E R+ + L + V RV++++ R V LS SSD Sbjct: 234 RRTTSRLLDGANYPPVRSLFPASHNAEARLAVSTLIEVVKRVALVA-ERTTPVLLSFSSD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + +A E+M + P+ I FN +YL++ + N+ + + + Sbjct: 293 GLVVEAGGTEEARASEAMEATFTGDPLTIGFNPQYLIDGLANLGAQ-----FALLSFVDA 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + Y++MP+R+ Sbjct: 348 FKPAVISPAGEDGEVIP----GYRYLIMPIRV 375 >gi|258650273|ref|YP_003199429.1| DNA polymerase III subunit beta [Nakamurella multipartita DSM 44233] gi|258553498|gb|ACV76440.1| DNA polymerase III, beta subunit [Nakamurella multipartita DSM 44233] Length = 408 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 90/420 (21%), Positives = 167/420 (39%), Gaps = 49/420 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R D+ + + + + + +PV +LL+ + L + E+ + Sbjct: 1 MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60 Query: 61 V------DVCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF 108 D G + VS LL +I R L LG +V+I G + F Sbjct: 61 TLDELEPDAPGGPAGTDRVLVSGRLLAEITRSLPAKPVDLAV----LGPKVSIVAGSARF 116 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L + P ++P + S + S+ V +T A ++ L GI I+ + Sbjct: 117 TLPTMPVEDYPPLPQMP-AASGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEIDGD- 174 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 +L ATD RLAV E+ + +++VP + + + + L V V+L E Sbjct: 175 -RLTLAATDRFRLAVRELGWHPDQENLSTAVLVPARTLADAAKTLGGA-KQVTVALGEGL 232 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + L+ +VRL+D EF Y++++P S+ + V L +++ RV++++ R ++ Sbjct: 233 LGLDAGDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVT-DRGHHLR 291 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L + L +T D G+A E + + + I FN YLL+ + + + D V Sbjct: 292 LQVGEGALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHA-----DTVR 346 Query: 348 FRLDSSNSSVFIRG----------------------KDKDSKNNKDNKVNAFYVLMPMRI 385 + + D D + ++ Y++MP R+ Sbjct: 347 LSFTTPARPALLVPIVKSDEPAESAEAAAEAAATPDIDADGVGSDEDTPAYRYLVMPARL 406 >gi|312142410|ref|YP_003993856.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus'] gi|311903061|gb|ADQ13502.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus'] Length = 371 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 80/384 (20%), Positives = 181/384 (47%), Gaps = 17/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++E+ D+ + L R + + T+P+ + L+ +L +KA+ E+ I + Sbjct: 1 MKFSIEQKDLYKALNIVRRAVAKNKTLPILTGIYLKVEKNILSLKATDLELGIKYNVNVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ + A +I+R+L E++ ++ I+ +S F + F EFPS Sbjct: 61 SEEEGSVVLPAMQFINIIRELPSEKIEIELNEDKW--QLQINCLNSLFKINGFDPDEFPS 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E F L ++ K+++E+ + + +E + L G F + E++++ V+T+ +R Sbjct: 119 LPEVEASAEFNLPAAKFKSMLEKVKISTSKDETQPALTGALFVVKAEEVRM--VSTNTYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + + + ++ +I+P + E+ +L + S+ + + + + + R Sbjct: 177 LSYVDSPLKTNLDQIIEVILPGSTLDELNNLLED-EGSIDIVVDNNYARFEFAGIELISR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP + + + + + L AV R S+++ + +S + + Sbjct: 236 LIEGKFPNYELVIPDEFNSKFKADLSKLHGAVKRASLIAKEDANIISISADEGIMEINST 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 G A E +++ + I + YL++++ + S +E+ + + + I+ Sbjct: 296 EGSAGYAHEELSIELSGPDQKINIDAGYLIDVLKVLDS-----EEINIEMIGPLNPLVIK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 +D+ Y++MP+R Sbjct: 351 NEDQAGGK-------FIYLIMPVR 367 >gi|78778386|ref|YP_396498.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9312] gi|78711885|gb|ABB49062.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT 9312] Length = 385 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 193/399 (48%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M+I ++++ + + + + T P+ ++LL A+ G + + + I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISLTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL + + +S + L + I +F L+ P ++ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPNESPVSLEVDENLDNIL-IKSDRGSFNLKGIPSDDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F + L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKATIFATSNDDSKQLLTGVNFTFKQNYLE--SASTDG 177 Query: 179 HRLAVAEV---------DIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + D I S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGNEEHIENKDKSPSIEDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP + K N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGAYPNYSQLIPDTFSKIFNFNTKKLIDALERIAVLADQQSSVVK 297 Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L + L ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S V Sbjct: 298 IKLDNTDLASISADAQDIGNANESIPVSYSGEDFDIAFNVRYLLEGLKVIASK-----NV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + + + +D N + Y++MP+++ Sbjct: 353 LLKCNLATTPAVFVPED--------NLNSFTYLVMPVQV 383 >gi|163848190|ref|YP_001636234.1| DNA polymerase III subunit beta [Chloroflexus aurantiacus J-10-fl] gi|222526095|ref|YP_002570566.1| DNA polymerase III subunit beta [Chloroflexus sp. Y-400-fl] gi|163669479|gb|ABY35845.1| DNA polymerase III, beta subunit [Chloroflexus aurantiacus J-10-fl] gi|222449974|gb|ACM54240.1| DNA polymerase III, beta subunit [Chloroflexus sp. Y-400-fl] Length = 377 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + D+ L + K+T+PV ++LL ++G L++ A+ E+ I I A+ Sbjct: 1 MKLTCMQEDLKRGLAAVGHAVAGKSTLPVLANILLATDEGRLKLTATNLEVGINRWISAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V A LL D+V L + ++ + + G ++ EFPS Sbjct: 61 ITRDGAVAVPAKLLTDVVGGLPNDKVTLSL--DQKTQTLRVECGRFVSNIKGVDADEFPS 118 Query: 121 TKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + V + +++ FA AT+E R L G+ ++ + L VA DG Sbjct: 119 LPTVSAQTPLVSLPAEVWQEAIDQVAFAAATDESRPILTGVLVRTRDQQVTL--VAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSM 237 RLA+ + + A +A ++P + + E+ RI+ D+ V + S + + E++ + Sbjct: 177 RLAMRTIQLSAPVAHAVDCLIPARTLSELARIIGDTDAEVAMVYTPGGSHVLFHTENIEV 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------ 291 RLI+G FP+++ +IP + ++ + L +AV S + VKL + Sbjct: 237 VSRLIEGRFPDFERIIPQQYLTRMVLDNSELAKAVKLASFFAGSSQNVVKLKIEPASELA 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ ++ + ++G ++ I N ++L + I + S+ ++ F + Sbjct: 297 PGRVVISANAAELGDNTSELDGSVTGEGGVIALNVRFLADAIAAVHSN-----QIAFEMQ 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S+ S + +D +++MPM Sbjct: 352 SAQSPAVFKPVGQD---------GYIHIVMPM 374 >gi|282889708|ref|ZP_06298247.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str. Hall's coccus] gi|281500282|gb|EFB42562.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str. Hall's coccus] Length = 376 Score = 299 bits (765), Expect = 7e-79, Method: Composition-based stats. Identities = 98/385 (25%), Positives = 183/385 (47%), Gaps = 13/385 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L+ I+ +K TIP+ + L++A +G L + A+ + I A Sbjct: 1 MKFVISTQELNFLINKCLNIVSQKATIPILSNFLMEAKNGELILTATDLTVGIRCHTEAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + A ++R+L +NE +S S F L +SEFPS Sbjct: 61 ILEEGATALPAKRFAQLIRELTAVNVEIATNDNET---TQVSADSSRFKLHGMNKSEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F++ LK+++ RT FA++ ++ R+ L G+F I E K TDG R Sbjct: 118 LPQMDGAVQFKIPEGDLKDMLFRTAFAVSRDDNRFALTGVFMQIMEG--KAIFAGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + + +A + I+P KAV EIL+ LS + V L +I + + + + Sbjct: 176 LSRTHLSLGLDVAFNGNYIIPIKAVEEILKNLSD-NGEATVYLMHDKIAIEASNTMLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ G++P+ VIP + L ++ L + +VS+ ++ +V+ + + +L + + Sbjct: 235 LLSGDYPDVSRVIPNQLETVLSLHREELITLLRQVSLFTADTSHSVRFTFNEGELRLAAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G+ SM V Y ++I FN Y L+I+ + + V L + I Sbjct: 295 TMEIGEGKVSMPVNYTGPRLEIAFNPIYFLDILRHSKG-----ETVTMGLTDPFNPGVIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 DK+ + ++ V+ +VLMPMR+ Sbjct: 350 --DKEGVSQINSSVSPLFVLMPMRL 372 >gi|294505818|ref|YP_003569876.1| DNA polymerase III, beta chain [Salinibacter ruber M8] gi|294342146|emb|CBH22924.1| DNA polymerase III, beta chain [Salinibacter ruber M8] Length = 422 Score = 298 bits (764), Expect = 8e-79, Method: Composition-based stats. Identities = 106/391 (27%), Positives = 191/391 (48%), Gaps = 24/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +D+LE L + K+T+P+ +L + + L + A+ EI I +P Sbjct: 46 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 105 Query: 61 VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G+ I V A L D +R L D I F +++ ++ G ++ + Sbjct: 106 FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 162 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S++P E E + + +L +++T FA++ + +R + G++F ++EE+ VA Sbjct: 163 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEE--TSVVA 220 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRL + + IVP KA RI+ D V + +S + Sbjct: 221 TDGHRLVKLTLP-ELRADTSADFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGES 278 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RLID +PNYQ+VIP ND+ L VN ++ AV RV + SS ++L +++D + Sbjct: 279 RVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTV 338 Query: 296 CMTVDNPD-MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++ ++ + +A E+++ Y+ PM+I FN +YL E++ N+ DEVVF L S N Sbjct: 339 TISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSPN 393 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ + + ++MP+ + Sbjct: 394 RAGIVLPREG------ADDEDILMLIMPVML 418 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 26/183 (14%), Positives = 64/183 (34%), Gaps = 9/183 (4%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 F +S+ L + A+ ++ L I F + + L+L A + + Sbjct: 43 PTPMKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTV 102 Query: 185 EVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 V + I VP + + + LR L ++S + +++ +++ Sbjct: 103 PVQFEKNGTPESTPIAVPAQRLIDTLRALPD---LPIEFAADSDFEIRMDTDQGHYKMVG 159 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMT 298 + +Y + E+ V L +++D+ + S V +S ++ + Sbjct: 160 HDGSDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSVV 219 Query: 299 VDN 301 + Sbjct: 220 ATD 222 >gi|259047904|ref|ZP_05738305.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC 49175] gi|259035438|gb|EEW36693.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC 49175] Length = 385 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 27/396 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V R L+ L R I K TIP+ + L A++ L + S E+ I +P Sbjct: 1 MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V GSI + A +IV+KL F E + I+ G ++F L Sbjct: 61 DEELQLTVQEPGSIVLPARFFGEIVKKLPLN---LFSIETNDQLQATITAGSASFTLNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P E E + + + + ++ +T A++T E R L GI I D KL A Sbjct: 118 SAVDYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGIHMVIK--DNKLKA 175 Query: 174 VATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ + + A + +P K + E+ RI+ + ++ ++++++I Sbjct: 176 VATDSHRLSQRIIPLQMPAGSDALTFEMTLPGKTLLELSRIIDGLE-TIDFAITDNQILF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLS 289 E+LS RL++G +P+ +I + + V + L AV+R S+MS + L+ Sbjct: 235 QTETLSFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKNNIATLT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 LS +++ +T +P++G E + V + P++I FN YL E + S E V Sbjct: 295 LSPERILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEALKLFGSS-----EAVI 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +N ++ K+ S + ++ P+R Sbjct: 350 NFLEANRPFTLKLKEDHSGIPH----SFIQLVTPVR 381 >gi|260588816|ref|ZP_05854729.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583] gi|260540595|gb|EEX21164.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583] Length = 370 Score = 298 bits (764), Expect = 9e-79, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 176/385 (45%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + + + + K T+P+ +L+ A+ ++ ++ E+ I + Sbjct: 1 MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A + +IVRKL D E T I+ + F + +F Sbjct: 61 VLEKGIIALDAKIFSEIVRKLPDNDVTIETDEKLNAT---ITCEKAKFNIPGKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A E + G F I E+ L ++ DGHR Sbjct: 118 LPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLRVISLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + ++VP K + EI +ILS + + V++ LS + I + + Sbjct: 176 ISIRKIGLKENCEDR-KVVVPGKTLNEISKILSGELEDMVEIYLSANHILFEFDDTKVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++++N +DR +++ + + +++ + ++ + Sbjct: 235 RLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINIQNGQMELR 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ +G E +++ + I FN K+L++ + I D+EV L ++ + F Sbjct: 295 IDSQ-IGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYLMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D+ Y+++P+ Sbjct: 349 IR----------DDNQQYIYLILPV 363 >gi|297621406|ref|YP_003709543.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044] gi|297376707|gb|ADI38537.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044] Length = 373 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 177/385 (45%), Gaps = 17/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L+ ++ T+PV ++L++A +G L + A+ + + A Sbjct: 1 MKFVISTQEFNYLISKCQHVVPPNPTMPVLSNILIEAKNGELILTATDLTVGVRCFTEAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS T+ L ++R+L EN + I S F L +P Sbjct: 61 VLEEGSTTLPVKKLASLIRELTSMNVEVTTSENHVTE---IISDTSKFKLNGMAGGNYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +L LK + RT FA++ ++ RY L G+F HI E+ + C V TDG R Sbjct: 118 LPSFADATPIKLTQQQLKEMFFRTSFAVSKDDTRYALTGVFLHI--ENGRACFVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA +D+ + IVP KAV EIL+ L ++ + L +I + E+ + Sbjct: 176 LARTRLDLEIDPSFSGGYIVPIKAVDEILKNLK-EEGDATLYLLNDKIAVETENSLHVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ G++P+ VIP + + L ++ L + +VS+ ++ +V+ S + ++ ++ + Sbjct: 235 LLSGDYPDVNRVIPDRSGQSLTLHREELLTLLRQVSLFTAEGYHSVRFSFGNGEVKLSAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G+ SM V Y+ +DI F+ + ++I+ + + V + S + I Sbjct: 295 TKDVGEGNVSMPVNYHADQIDIAFDPTFFMDILKHTRG-----ERVTLGVTDSFNPGVIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ ++++ +VLMPMR+ Sbjct: 350 DTEEGTEDSP------LFVLMPMRL 368 >gi|269837341|ref|YP_003319569.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM 20745] gi|269786604|gb|ACZ38747.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM 20745] Length = 379 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 93/393 (23%), Positives = 179/393 (45%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++ ++ D+ LG+ R + RK+T+PV +VLL A G L++ A+ EI IT A+ Sbjct: 1 MRLSCQQEDLQRALGYVSRAVSRKSTLPVLGNVLLSAEGGRLKLAATNLEIAITAWADAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ITV + LL + V L + + + + V +S S +++ +FP+ Sbjct: 61 VEEEGTITVRSDLLTEFVASLPNDSV--SIELDRRTLSVAVSCARSKAHIKGIGAEDFPT 118 Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + + + + FA AT++ R L G+ L L A DG Sbjct: 119 LASIGDTEPTARIDPAEFREAIGQVAFAAATDDSRPVLAGVLAEFEGASLTL--AAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237 RL+V D+V + SI+VP +A+ E+ RI+ + + ++++ + ++ + S+ Sbjct: 177 RLSVRRCDLVEPSRESLSIVVPARALQELARIIGDLEEPIDLAVTPNRSQLLVRAGSIEF 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL-------SL 290 RLIDG FP+ +++IP + + V+ A R + + V++ L Sbjct: 237 LSRLIDGHFPDVRHIIPQTYGTRMVVSRDEFLAAARRAKLFAQSNNDVVRIQMNPGDGEL 296 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + G + + I FN +YL E++ + S+ EV + Sbjct: 297 DPGFATISAQAAETGDNEDHLEAQVEGPQAHIAFNGRYLTEVLSVMRSN-----EVALEM 351 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S N++ + D + +V+MPM Sbjct: 352 TSPNAAGVFKPVGSD---------DFTHVIMPM 375 >gi|331092113|ref|ZP_08340944.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] gi|330402314|gb|EGG81885.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA] Length = 369 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 181/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D + E + + I+ + F + EF Sbjct: 61 IIEKGLIAIDAKIFSEIVRKLPDNEVVI---ETDSNLQTLITCEKAKFNISGKSGEEFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E EL+ LK ++ +T F ++ + + G F INE LK+ VA DGHR Sbjct: 118 LPYIEKEEPVELSQFTLKEIIRQTIFTISDHDSNKLMTGELFEINENILKV--VALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +V+++ A +IVP K + E+ +ILS + +S + + + I + + Sbjct: 176 ISIRKVELMNNYA-SKKVIVPGKTLIEVSKILSGEVESKANIYFTPNHIVFEFDQTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++RVN L +DR ++ + + +++ + + + Sbjct: 235 RLIEGEYFKIDQMLSSDYETKVRVNKKELLSCIDRAMLLVKEGDKKPIIINIGDEAMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+E+ L ++ + F Sbjct: 295 IQSQ-LGSMNEDILITKEGKDLLIGFNPKFLMDALRVIE-----DEEIQIYLTNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D K + Y+++P+ Sbjct: 349 IR----------DEKESYIYLILPV 363 >gi|30248033|ref|NP_840103.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718] gi|30179918|emb|CAD83913.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718] Length = 373 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 117/392 (29%), Positives = 198/392 (50%), Gaps = 28/392 (7%) Query: 1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T+ +R + + L I+ER++T+P+ + L++ +G L + + EIE Sbjct: 1 MKLTITDRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGQLTLVTTDLEIEAEATSNI 60 Query: 60 -SVDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G+ TVS L DI+R L GA I + + I G S F LQ P Sbjct: 61 PELENQGALQTTVSVRKLQDILRALPSGAAIELTRSE---NRLQIVSGKSRFSLQLLPAE 117 Query: 117 EFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP E ++ LA VLK ++R AMA +++RYYLNG+ I ED KL V Sbjct: 118 DFPRMIRDSEPCSATYTLAQRVLKKHLQRVAHAMAQQDLRYYLNGMLLLI--EDNKLTLV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL + +D+ K + IVPRK V E++R L D V V + ++ Sbjct: 176 ATDTHRLGITSIDLDGNFEKSET-IVPRKTVLELIRQLEDSDKPVIVEIYPKKVCFRFSD 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292 + ++I G+F +++ IP ++ + VN + A+ R +I+SS + V L++++ Sbjct: 235 AVLVSKVISGKFLDFRRAIPQTSVFQFDVNRLDFLHALQRTAIISSSNDLFRNVHLNITN 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 KL ++ N + +A E +++ Y+ +D FN YL+E+++N+ S +++ +S Sbjct: 295 GKLNISAKNKEQEEAQEEIDIVYSNETIDTSFNIVYLMEVLNNLDS-----EQIRCSFES 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S++ I D + +VLMPMR Sbjct: 350 MQSAILITLPDDEQ---------FKHVLMPMR 372 >gi|317131010|ref|YP_004090324.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3] gi|315468989|gb|ADU25593.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3] Length = 369 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 99/387 (25%), Positives = 189/387 (48%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + E L A R + K ++P +L++ D + ++A E+ I+ I A Sbjct: 1 MQFRCNTKKLAEALAVAGRAVSSKTSMPALEGILIRTGDHQIILQAYDLELGISTTIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G I ++A + D+VRKL G + +++L T ++ G + F + P EFP Sbjct: 61 CRSDGEIVLNAKIFADMVRKLP-GDTVEVKSDDKLLT--IVTSGAAEFTILGTPAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S EL ++L +++ +T FA++T+E GI F + E+ L+L VA DG R Sbjct: 118 LPSLSDGASIELPENLLSSMIRQTIFAISTDESNPIHTGILFELQEKTLRL--VAVDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + +VP K + EI ++L S D + V++ E I +I ++ Sbjct: 176 LAIRTEPVTQD--GSFAFVVPGKTLAEISKLLHSESDEKITVTVGEKHILFDIAGYTVIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 RL++G+F +Y++V+ + RVN L ++DR S++ + R++ V+ SD++ + Sbjct: 234 RLLEGQFLDYKSVLGGNTTAHARVNARALTDSIDRASLLITDRLKSPVRCIFESDRIRIK 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + +GK + ++ + P ++ FN +YL++ + DEV +L S + Sbjct: 294 CSSS-IGKVYDEVSAAFEGEPCEMGFNNRYLMDALKAADC-----DEVRIQLGGPLSPMK 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D D+ ++++P+R+ Sbjct: 348 ICPPDGDA---------FIFLVLPVRL 365 >gi|320095109|ref|ZP_08026818.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 178 str. F0338] gi|319977976|gb|EFW09610.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral taxon 178 str. F0338] Length = 378 Score = 298 bits (763), Expect = 1e-78, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + E + R + + P+ V ++A D L + + E+ IPA+ Sbjct: 1 MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIRAADDELTLSSFDYEVSANSKIPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + VS LL DI + L + G +VN+ G S+F L P E+P Sbjct: 61 VDEAGEVLVSGRLLADISKSLPSKPVTVELE----GQKVNLVCGSSHFTLAVMPLDEYPL 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ V + A + ++ L G+ + + +ATD +R Sbjct: 117 LPAQPAAIGYIDPQTL-AQAVAQVSIAASRDDTLPLLAGVCTELTGS--TITFLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232 LA+ E+D + + ++ + + ++ + ++S + V+V LS S I + Sbjct: 174 LAMRELDWQPTDTSIEEVTVIKARILQDVAKSMTSG-TKVEVGLSGQSQPGASSLIGFSA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + L+DG++P + + P + + + L +AV R+S+++ R +V+L+ S Sbjct: 233 SGRHTTSTLMDGDYPAVRRLFPETTPIQAVCDRHALLEAVKRMSLVA-ERNTSVRLAFSE 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + + +A E++ + + FN ++L+E + + + D V F Sbjct: 292 GQVVLEAGQGENAQASEAIEATLHGDDISTAFNPQFLIEGLSVLDT-----DYVRFGFTH 346 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I G+ K ++ Y+LMP+R Sbjct: 347 ATKPAVITGQKKP---DEGEVTQFRYLLMPIR 375 >gi|227893837|ref|ZP_04011642.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047] gi|227864326|gb|EEJ71747.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047] Length = 378 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L + L + S +I I IP + Sbjct: 3 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 62 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 63 EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSENSEFTINGLDAN 119 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + +K AVAT Sbjct: 120 NYPRLPEIPDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 177 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +++ I +LS Sbjct: 178 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKVCPGDNQALFIIGNLS 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293 RL+DG +P+ +IP + + L A++R S+++ + R V L+L Sbjct: 238 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVEKQ 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 298 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMDFTK 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + + ++ P+R Sbjct: 353 PLRPFIINPDKDNVE--------FVQLITPVR 376 >gi|218781945|ref|YP_002433263.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] gi|218763329|gb|ACL05795.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 376 Score = 297 bits (762), Expect = 1e-78, Method: Composition-based stats. Identities = 101/394 (25%), Positives = 192/394 (48%), Gaps = 27/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + L+ + I RK T P++ +VL+ A + + A+ EI G PA+ Sbjct: 1 MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+IT+ L++IVR+ GA EN V I + + ++FP Sbjct: 61 VEEEGTITIPGKKLFEIVREFPHGAIDVRDLEN---GWVQIFKDKVQYKIVGMDPNDFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLNGIFFH--INEEDLKLCAVAT 176 E E + FEL S V +++E+T+ + M++EE R +L G++ + EE L V+T Sbjct: 118 LPEVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVST 177 Query: 177 DGHRLAVAEVDIVAQI-----AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 DG+RLA + + +I+P+K + EILR+ S + + + ++ + Sbjct: 178 DGNRLARVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRV-SEGGGKISLGVQKNYFVIQ 236 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 E+ ++ RL++GE+P+Y VIP + + + R+SI+ S R +AV+ + Sbjct: 237 KEAETIIGRLVEGEYPDYNLVIPNDLETFFEIEKQPFVSILKRMSILCSERYRAVRFKVD 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++V+NP++G + E M + +N + FN ++ ++ ++ + S D + + Sbjct: 297 PQRLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKS-----DMIKVNIL 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ + G + V+MPMR+ Sbjct: 352 DSSKPCILEGSEDP---------RYLSVIMPMRM 376 >gi|296134506|ref|YP_003641748.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12] gi|295794628|gb|ADG29418.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12] Length = 371 Score = 297 bits (762), Expect = 2e-78, Method: Composition-based stats. Identities = 120/390 (30%), Positives = 208/390 (53%), Gaps = 27/390 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++T R ++L+LLG I+ER+ T+P+ +VL+Q N S E++I +V Sbjct: 3 RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFITSDMEVQIRLQAGEAV 62 Query: 62 D---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +ITV+ L DI+R G + + ++ + S F LQ+ P +F Sbjct: 63 QTSAEDAAITVNMRKLLDILRAASPGNVTLEWSDG----KMTVRAAKSRFSLQTLPAEDF 118 Query: 119 PSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P + ++ L +LK L+ THFAMA +IRYYLNG+ + + + + L VAT Sbjct: 119 PLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--VAT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235 DGHR+ +A + + + II+PRK V E+ R+LS +D + ++L+ ++ L ++ L Sbjct: 177 DGHRMTLASAPLEKAVERRE-IILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDGL 235 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +LI+G+FP+YQ V+P + L+V T L+ A+ RV+I+++ + + V+++L L Sbjct: 236 EFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGLL 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T N + +A E +++ Y ++I FN YL++ + N++S D++ L NS Sbjct: 296 RLTSINAEQEEAQEEIDIDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDGNS 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S D+ N YV+MPMRI Sbjct: 351 SALFTMPDEP---------NFKYVVMPMRI 371 >gi|283457091|ref|YP_003361654.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18] gi|283133069|dbj|BAI63834.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18] Length = 380 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 169/388 (43%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L+ A+ G + I + E I A Sbjct: 7 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSARQVIAAD 66 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V +L +I R L + E + + I +NF L P ++P Sbjct: 67 VEAEGVCLVPGKILAEICRSLPNAPVEFTADE----SVIRIHCRSANFQLAGMPVVDYPE 122 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V++ A++ +E L GI IN + + L +ATD +R Sbjct: 123 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 179 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSM 237 LA+ E+ ++++ K V E+ LS ++ ++L + I + Sbjct: 180 LAMREIKWNPTNPDVQAAVLLKAKTVSEVGSTLSGS-GNLSIALPAAGELIGFAAGTRRT 238 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L+DG++PN + + P V ++L +A R+S+++ R ++L + + + Sbjct: 239 TSVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVA-ERNTPLRLKFTQGSVAI 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D +A E++ + + + + +N YL + + + + V F + Sbjct: 298 DAGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGLKVFGT-----EFVRFSFTDAPKPA 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G+D+ ++ N Y+LMP+R+ Sbjct: 353 VISGQDEP---LAEDDRNYRYLLMPVRL 377 >gi|255283815|ref|ZP_05348370.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM 14469] gi|255265698|gb|EET58903.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM 14469] Length = 367 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 182/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++++L+ + + + K T+P+ +L+ A G ++ + E+ I + S Sbjct: 1 MKIVCQKNELLKSVNIVMKAVPSKTTMPILECILIDATRGEIKFTTNDMELGIETVVNGS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I+RKL + E + + I + F + ++P Sbjct: 61 ILEKGKIALDARLFSEIIRKLPENEV---TIETDNKLQATILCEKAQFSISGKDGEDYPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S ++ LK ++++T F++A E + G F I++ LK+ V+ DGHR Sbjct: 118 LPFVEKDNSICISQFTLKEVIKQTIFSIAQNENNRMMTGELFEISDNILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ K I+VP K + EI +ILS + + V + +++ I ++ Sbjct: 176 ISIRKIELKENYEK-KKIVVPGKTLIEISKILSGETEDMVNIYFTKNHILFEFDNTIAVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ + +L++N L +DR +++ + + + +S + + Sbjct: 235 RLIEGEYFRIEQMLSSDYETKLKINKKELLNCIDRATLLIKEGDKKPIIIGISDTSMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + I FN ++L++ + I D+ + L + + F Sbjct: 295 I-NSQIGSMNEQISIEKEGKDILIGFNPRFLMDALRVID-----DETITIYLVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D+ + Y+++P+ Sbjct: 349 IR----------DDAESYIYLILPV 363 >gi|111219508|ref|YP_710302.1| DNA polymerase III subunit beta [Frankia alni ACN14a] gi|111147040|emb|CAJ58687.1| DNA polymerase III, beta chain [Frankia alni ACN14a] Length = 413 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 29/402 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 MK VER + E + R + + T + V +LL A +L++ A E+ G + Sbjct: 22 MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ LL +I R L GT + I+ G++ F L P ++ Sbjct: 82 ATVSEEGRALVNGKLLAEITRALPAAP----VDLGIDGTRLVITCGNARFALPMLPVDDY 137 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ V + + S V + A ++ L G+ I + L L ATD Sbjct: 138 PALPAMPPV-TGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTL--AATDR 194 Query: 179 HRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLS-----E 225 +RLAV + + +VP + + + + LS V ++L E Sbjct: 195 YRLAVRSLKWRPDDSAGEGDAAAPVTVALVPARTLLDTAKSLSGSGVEVSIALGTGPSGE 254 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + + + RL++G+FP ++ ++P S+ ++ L++AV RV+++++ + Sbjct: 255 TLAGFAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVAA-KTAP 313 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V+LS S D L + +A E++ V Y+ + + FN YLL+ + + SD V Sbjct: 314 VQLSFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVRIGF 373 Query: 346 VVFRLD--SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++N + GK D D Y+LMP+R+ Sbjct: 374 ASAEDPAVAANKPAILTGKADDDGEVPD----YRYLLMPIRL 411 >gi|119492671|ref|ZP_01623850.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106] gi|119453009|gb|EAW34180.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106] Length = 391 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 95/407 (23%), Positives = 195/407 (47%), Gaps = 40/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M+ VE+ + L R I + T P+ ++LL+A L + A + I ++ Sbjct: 1 MRFIVEQEKLSSNLSLISRAIPSRPTHPILSNILLEATAETQQLSLTAFDLSLGIYTSMS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V+V G T+ A LL DIV +L + ++ + + ++ + ++ E+ Sbjct: 61 AEVEVGGRFTLPAKLLNDIVSRLPNSPI--ALDDDAGESIITLNSSSGRYQVRGMGAEEY 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S +L + L ++ T FA + +E + L G+ I E+L+ +TDG Sbjct: 119 PALPSIEDGESIQLPADALIEGLKGTLFATSPDETKQVLTGVHLKIQSENLEF--ASTDG 176 Query: 179 HRLAVAEVD----------IVAQIAKMPSIIVPRKAVGEILRIL-------SSKDSSVKV 221 HRLAV + + I + + +P +A+ E+ R++ VK+ Sbjct: 177 HRLAVVKAESLNGDDQSEAISTAKIEDFEVTIPARALREVERMIAAASPGKEDSKLMVKL 236 Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ES++ + + ++ R ++G +P YQ +IP ++ V+ N A++R+++++S Sbjct: 237 RFDESQVIFELGNQRLNSRKLEGSYPAYQQLIPNQFLNQINVDRRNFLGALERIAVLASQ 296 Query: 282 RIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISS 338 + VK ++ +D K+ ++V+ D+G A+ES++ + P ++ FN KYL+E + +++ Sbjct: 297 KNDIVKCTIDNDNQKISLSVEAADVGNALESLSAQVSGDEPKELAFNVKYLMEGLKVLNT 356 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+++ S V + V Y++MP+++ Sbjct: 357 S-----EIQIQLNAATSPVILSP---------LGGVKMTYLVMPVQL 389 >gi|257455165|ref|ZP_05620403.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60] gi|257447498|gb|EEV22503.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60] Length = 391 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 114/410 (27%), Positives = 206/410 (50%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ + R +L+ + + ++++ + + ++ L D L + AS E+E+ + Sbjct: 1 MQLVISRDLLLQAINLISKAADKRHNMVILGNMKLALTDSQLVMVASDLELELQATLNLP 60 Query: 60 --SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G ITV A+ DIV+ L DG +S N+ + I G S F L + P + Sbjct: 61 ASACKQPGEITVPANKFKDIVKLLPDGLPVSISVGND--NQCLIVCGSSRFKLSTLPAQD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E E V +L L +L+++THFAMA +++RYYL G+ F + E +L V+TD Sbjct: 119 FPLLGEPEQVTPIQLGREDLVDLLDKTHFAMAVQDVRYYLTGMLFEVKER--QLATVSTD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKA-------VGEILRILSSKDSSVKVSLSES--RI 228 GHRLA+A I + + I+PRKA + E+ R+L ++D+ + +++ ++ Sbjct: 177 GHRLALARTVIACDDSVALAAILPRKAVLELQRLLAELKRMLPNQDNKITLNVGREFLQV 236 Query: 229 HLNIESL------------SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 L + + + RLIDG+FP+Y+ V+P +K R++ L + RV+ Sbjct: 237 LLPFGEVDSTGQLKNAIMVAFTARLIDGKFPDYRRVMPSLTNKIARISQEQLANVLRRVA 296 Query: 277 IMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 I+S+ + + V S + L + N + +A E + V Y P++I FN YLL++++ Sbjct: 297 ILSNEKSRGVIFDFSGDNNLMVRASNAEQDEASEQLEVKYQGEPLEISFNVAYLLDVLNV 356 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + E+ F + +N+SV ++ + +V+MPMRI Sbjct: 357 LQG------EIDFHMSQANASVLVQQVNDSKHE---------FVVMPMRI 391 >gi|148543245|ref|YP_001270615.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016] gi|184152657|ref|YP_001840998.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112] gi|227364308|ref|ZP_03848401.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3] gi|325683507|ref|ZP_08163023.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri MM4-1A] gi|148530279|gb|ABQ82278.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016] gi|183224001|dbj|BAG24518.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112] gi|227070621|gb|EEI08951.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3] gi|324977857|gb|EGC14808.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri MM4-1A] Length = 380 Score = 297 bits (761), Expect = 2e-78, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T+ RS + L + R I K TIP+ + + N+ + + S +I I I A+ Sbjct: 1 MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A DIV+KL D E G + +I+ G + F + Sbjct: 61 DADNDLTIEETGAIVLPARFFSDIVKKLPDKKV---TIEVTSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E S L + +LK ++ +T A++ +E R L G+ + D L A Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGVHMMLK--DGVLTA 175 Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + +I+P K++ E+ ++S V++ ++E+++ Sbjct: 176 VATDSHRLAQRKVVLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290 + RL++G +P +IP + D + + +++R S++S R VKLSL Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLK 295 Query: 291 -SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S + + ++ D+PD+G E + + ++I FN Y+ + + + + Sbjct: 296 PSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYMKDALRSFGQAT-----IKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + N +++ P+R Sbjct: 351 SFTSPLRPFTLVPTED--------QENFVHLITPVR 378 >gi|187933007|ref|YP_001884267.1| DNA polymerase III subunit beta [Clostridium botulinum B str. Eklund 17B] gi|187721160|gb|ACD22381.1| DNA polymerase III, beta subunit [Clostridium botulinum B str. Eklund 17B] Length = 366 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 189/385 (49%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M E+ +L+ + + I K+T+ V + + A + L + S ++ I + A Sbjct: 1 MIFICEKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVNAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A + +I+RKL + + ++ + I+ S F + EFPS Sbjct: 61 VLDKGEIVIDAKIFGEIIRKLPNSDIKIETVKEDV---IQITCEKSVFNVVCMNAEEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+ S+LKN+++ T F++A +E R L GI F + + +L L VA DG+R Sbjct: 118 LPNINEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRNLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I +++P K + E+ +IL D +V ++ + + I N+E+ + R Sbjct: 176 LAIRSEFLDNDI--NLEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L+DG+F NY +++P + + V + ++R S+M+ + L L + L +T Sbjct: 234 LLDGKFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E +++ ++I FN +YLL+++ N+ S DEV+ + S S I Sbjct: 294 -NSQLGKVREEVSINLQGDEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD + N+ Y+++P+R Sbjct: 348 KEKDGE---------NSQYLVLPVR 363 >gi|57239515|ref|YP_180651.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Welgevonden] gi|58579497|ref|YP_197709.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Welgevonden] gi|57161594|emb|CAH58522.1| DNA polymerase III, beta subunit [Ehrlichia ruminantium str. Welgevonden] gi|58418123|emb|CAI27327.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Welgevonden] Length = 375 Score = 297 bits (760), Expect = 2e-78, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 22/387 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 V + +L+ L + I+E++++I V V ++A D + + ++ +I I +I A+V Sbjct: 8 NFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISANV 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 V G I VSA LLYDIVRKL + +I F + + I + F L +FP Sbjct: 68 LVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKD--GRLTIECSRTEFSLPIVDIEKFPVI 125 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E F L S L NL +T FA++ EE R+ LNG++ H + + LC ATDGHRL Sbjct: 126 EHNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTS--NGALCCAATDGHRL 183 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESLSMSV 239 ++A++ V I IIVP+K V EIL+I+S + + +SLS +I + + Sbjct: 184 SLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYILIS 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG FP+Y ++IP S+DK + ++ L A+DRVS++ +++ +KL + +KL ++ Sbjct: 244 KVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLILSA 303 Query: 300 DNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G A E + + Y+ + I N +YL+E + I + +N+++ Sbjct: 304 ASSDQGDAREELEIDTYSTSEITIGLNARYLMEALYCIKG------KCHLSFYDANTAIL 357 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D D +A Y++MPMRI Sbjct: 358 IQEQDND---------DAMYIIMPMRI 375 >gi|302872924|ref|YP_003841557.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B] gi|307687877|ref|ZP_07630323.1| DNA polymerase III subunit beta [Clostridium cellulovorans 743B] gi|302575781|gb|ADL49793.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B] Length = 367 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 104/388 (26%), Positives = 188/388 (48%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T +++++ E + A + + K+T+P+ +LL A L I +S ++ I A+ Sbjct: 1 MNFTCDKTNLQEAISIAQKAVTGKSTMPILQGLLLNARGNKLTINSSDIDLGIETKCNAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSI V + L DI+RKL + QI E + I+ S F L EFP Sbjct: 61 IKEEGSIVVDSKLFGDIIRKLPNSEIQIKSISEGT----IEITCQRSRFTLVHMKADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++KN++ T FA+A +E R L GI F I L L VA DG Sbjct: 117 QLPYIDEDEIISIPQKLIKNMIRSTIFAIAIDETRPILTGILFEIKNRTLNL--VALDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + I + + S ++P K + E+++IL + V ++ + + I N+ + Sbjct: 175 RLALKKETIDTE--QEFSAVIPGKTLHEVVKILED-EGDVDITFTTNHILFNLGETKVVS 231 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RL++GEF YQ +IP ++ + VN +L +++R S++S +K ++S D + +T Sbjct: 232 RLLEGEFIKYQAIIPEEHELSISVNRASLLNSIERASLVSKDASSNLIKFNISEDNIVIT 291 Query: 299 VDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N +G E +++ + I FN KYL++ + + ++ + + S+ S Sbjct: 292 S-NSQLGDVREEVSIKLLKGNELQIAFNSKYLIDALKIME-----EETITLQFTSAVSPC 345 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + D N Y+++P+RI Sbjct: 346 IIKNIEND---------NVIYLVLPVRI 364 >gi|81251062|gb|ABB69868.1| DNA polymerase III beta chain [Nitrosospira sp. TCH716] Length = 369 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 204/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATD 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D S+TV+A L DI+R L + Q++ + + + + G S F LQ+ P + Sbjct: 61 GGKADEEYSVTVAAKKLQDILRALPERVQVTLETSD---SRLQVKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + ++ LK+L+ +AMA ++IRYYL + E+ +L VAT Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++ L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + Y+ +DI FN YLL++++N + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|167759578|ref|ZP_02431705.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704] gi|167662805|gb|EDS06935.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704] Length = 402 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 87/385 (22%), Positives = 187/385 (48%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 34 MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEIEGQ 93 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D E + + I+ + F + P EF Sbjct: 94 ITERGMIAIDARIFSEIVRKLPDNEV---TIETDSNLQTVITCEKAKFDIAGKPGEEFSY 150 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S E++ LK ++ +T F++A E + G F I + L++ ++ DGHR Sbjct: 151 LPIIEKEESIEISQFTLKEIIRQTIFSIADTESNKLMTGELFEIKDNILRV--ISLDGHR 208 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ Q+ +IVP K + E+ +ILS + +S V +S + + I ++ + Sbjct: 209 ISIRKIELKDQVTD-KKLIVPGKTLIEVSKILSGEIESMVNISYTNNHIVFEFDNTIVVS 267 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R+N L +DR +++ + + +++ + + + Sbjct: 268 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMELK 327 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+EV L ++ + F Sbjct: 328 IKSQ-VGSMNEEIYISKEGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCF 381 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ N Y+++P+ Sbjct: 382 I----------KDDEENYIYLILPV 396 >gi|73748915|ref|YP_308154.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1] gi|73660631|emb|CAI83238.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1] Length = 378 Score = 297 bits (760), Expect = 3e-78, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS T+ A LL + V L + N +NI + +FP Sbjct: 61 IEEEGSTTIPAKLLTEFVSSLPNDKI--DLSLNAKSKALNIKCARFEARITGVDSKDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S +++ + V FA A +E R L G+ L L A DG R Sbjct: 119 IPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTL--AAADGFR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237 LAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ + Sbjct: 177 LAVYKLPLLESVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291 +L+ G FP Y +IP S + V+ A +I + V+L + Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDTT 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|58617550|ref|YP_196749.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel] gi|58417162|emb|CAI28275.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel] Length = 375 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 22/387 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 V + +L+ L + I+E++++I V V ++A D + + ++ +I I +I A+V Sbjct: 8 NFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISANV 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 V G I VSA LLYDIVRKL + +I F + + I + F L +FP Sbjct: 68 LVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKD--GRLTIECSRTEFSLPIVDIEKFPVI 125 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E F L S L NL +T FA++ EE R+ LNG++ H + + LC ATDGHRL Sbjct: 126 ENNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTS--NGALCCAATDGHRL 183 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESLSMSV 239 ++A++ V I IIVP+K V EIL+I+S + + +SLS +I + + Sbjct: 184 SLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYILIS 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG FP+Y ++IP S+DK + ++ L A+DRVS++ +++ +KL + +KL ++ Sbjct: 244 KVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLILSA 303 Query: 300 DNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G A E + + Y+ + I N +YL+E + I + +N+++ Sbjct: 304 ASSDQGDAREELEIDTYSTSEITIGLNARYLMEALYCIKG------KCHLSFYDANTAIL 357 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ +D D +A Y++MPMRI Sbjct: 358 IQEQDND---------DAMYIIMPMRI 375 >gi|298209075|ref|YP_003717254.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559] gi|83849002|gb|EAP86871.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559] Length = 362 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 97/376 (25%), Positives = 172/376 (45%), Gaps = 17/376 (4%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 ++ L +I NT+P+ + L + ++ L+I AS E + I D GSI V Sbjct: 1 MKQLQVLGGVINTSNTLPILDNFLFELDNNSLKISASDLETTMVSTIDVESDSQGSIAVP 60 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 A LL D ++ + ++N + IS + + EFP+ E Sbjct: 61 ARLLLDTLKTFPEQPLTFVKEDN---NTIEISSNHGKYAVAYADGEEFPNAVALEDPSQT 117 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 L VL + +T FA +++R ++G+FF ++ L VATD H+L Sbjct: 118 VLNGDVLATAISKTIFASGNDDLRPVMSGVFFQFAKDGLTF--VATDAHKLVKYSRT-DV 174 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 I+P+K + + IL+ DS V V +ES +++ + RLIDG++PNY+ Sbjct: 175 SATNEAEFIMPKKPLTLLKGILAGSDSDVTVEYNESNARFTFDNVELICRLIDGKYPNYE 234 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIE 309 VIP N +L ++ + +V RVSI S+ V+L ++ +L ++ ++ D KA E Sbjct: 235 AVIPKENPNKLTIDRSQFLNSVKRVSIFSNKTTHQVRLKIAGSELNISAEDIDYSNKAEE 294 Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 + Y M I FN ++L E+++N++++ EV + N + + D Sbjct: 295 RLTCAYQGDDMQIGFNSRFLSEMLNNLNAN-----EVQLEMSLPNRAGILTPVD-----G 344 Query: 370 KDNKVNAFYVLMPMRI 385 D ++MP+ + Sbjct: 345 LDEGELVTMLVMPVML 360 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+T++RS L + I K T V L+ L I A + + Sbjct: 244 KLTIDRSQFLNSVKRVS-IFSNKTTHQ----VRLKIAGSELNISAEDIDYSNKAEERLTC 298 Query: 62 DVCG---SITVSAHLLYDIVRKLQ-DGAQISFFKENELGT 97 G I ++ L +++ L + Q+ N G Sbjct: 299 AYQGDDMQIGFNSRFLSEMLNNLNANEVQLEMSLPNRAGI 338 >gi|300780157|ref|ZP_07090013.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium genitalium ATCC 33030] gi|300534267|gb|EFK55326.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium genitalium ATCC 33030] Length = 418 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 82/399 (20%), Positives = 171/399 (42%), Gaps = 28/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + + R + KNT PV V++ A+D LE E+ I A VD Sbjct: 30 FRVHKDDLSDAVAWVARNLPTKNTQPVLRAVVITADDNGLEFAGFDYEVSTRVRIAAEVD 89 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + V+ L+ DIV + +N+ + + G + F L P ++P Sbjct: 90 QPGRVAVAGKLMADIVSNMPAKPIDVSVADNQ---RLLLQGGSARFELPLMPLDDYPQLP 146 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + L ++ + + + A ++ L G+ ++ ++ ATD RLA Sbjct: 147 VLPEV-TGTLDTTTFVDAITQVASAAGRDDTLPMLTGVHMEVSGN--RVQLAATDRFRLA 203 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIE 233 + ++ + + + +++P K + + R L + + V++++ + L+ Sbjct: 204 LRSLEWEPKAPDVEAKLLIPAKTLLDNARTLDTHLEEPVEIAVGSGDNVGGDGLFGLHSG 263 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D EFPN Q ++P ++ V L +A+ RVS+++ R +++ Sbjct: 264 NRETTTRMLDAEFPNIQPLLPKTHTSMASVEIAPLMEAIRRVSLVA-DRNAQLRMHFQPG 322 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + + G+A ES+ + + I FN YL + ++ I + D VVF Sbjct: 323 EVTLFASGAESGEASESLQCAFTGADELLIAFNSGYLRDGLNVIHT-----DRVVFGFTE 377 Query: 353 SNSSVFIRGKDKDSKNNKDNK------VNAFYVLMPMRI 385 ++ + + + + N Y+LMP+R+ Sbjct: 378 ASRPAIMVPEPDELPEAAADGSFETPATNFTYLLMPVRL 416 >gi|289422499|ref|ZP_06424342.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius 653-L] gi|289157071|gb|EFD05693.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius 653-L] Length = 367 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 184/386 (47%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + +A + I + TI + +L + +L + E+ I I AS Sbjct: 1 MKLICGQKKLANAINNAQKAINNRTTIELLRGILFSTKEDMLTVTGYDNELCIETKIDAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I V++ L+ DI+RKL D E+ + IS +S + ++ EFP Sbjct: 61 VSKAGKIVVNSKLVGDIIRKLPDSMVSIEVDED---YNMFISCLNSRYKIKGINAEEFPV 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + + +++++ +T FA A E + L G ++E + + AV DG+R Sbjct: 118 VADLETEKMIKFNQAEMRHMIRQTVFATANEPVNPILAGELIEVSEGHINMAAV--DGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + + S+IVP + + +LS D + + I + + ++ R Sbjct: 176 LAVRKSILEDSSSDDISVIVPGTTLNHLNSLLSD-DGDFYMGVDPKNIVFVLGNTKITAR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 L+DG F Y +++P ++ VN NLR++V+R +++ SS + +K+S+SS + +T Sbjct: 235 LMDGNFTKYDSLLPKEYMSKVLVNTRNLRESVERAALLFSSEKNNIIKVSVSSGMMVITA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + G A E +N+ ++I FN +Y L+ I NI S + + L + I Sbjct: 295 NN-ENGNAYEEINIELEGEDLEIAFNSRYFLDGIKNIDS-----EFIEIELGGPVNPCII 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D V Y+++P+R+ Sbjct: 349 KPVD---------GVEYIYLILPVRV 365 >gi|327404393|ref|YP_004345231.1| DNA polymerase III subunit beta [Fluviicola taffensis DSM 16823] gi|327319901|gb|AEA44393.1| DNA polymerase III, beta subunit [Fluviicola taffensis DSM 16823] Length = 372 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 180/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V +++L L ++ NT+P+ + L D L I AS E + + Sbjct: 1 MNFIVSSTNLLRHLQSISGVLSTSNTLPILDNFLFTITDSQLIISASDLETTMQTTMEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + A +L D+++ L D FK ++ EV I++ + + F EFP Sbjct: 61 ATDSGKVAIPAKMLLDVLKNLPDQP--CTFKIDDSKYEVEIAYDNGKSKMVGFNGEEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 T E S ++ ++ + + +T FA +++R ++G++ + D+ VATD H+ Sbjct: 119 TPTIENSTSIRISGEIISSAINKTLFAAGNDDLRPVMSGMYCQFSPSDITF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V Q + I+P+K + + L D V++ ++S + + R Sbjct: 177 L-VRYRRSDGQATNGAAFILPKKPLNLLKSNLR-GDEEVQLEYTDSNAIFTFNDIVLMCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N L V+ A+ RVSI ++ VKL ++ +L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNILIVDRMQFLGAIKRVSIFANKTTHQVKLKIAGSELNVSAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E + Y+ ++I FN ++L+E+++NI + EV + + + + Sbjct: 295 DLDFSNEANERLTCNYDGTDIEIAFNSRFLMEMLNNIDAA-----EVKMAMSEPSRAGLL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++++ + ++MP+ I Sbjct: 350 MPNTSENES-----EDILMLVMPVMI 370 >gi|253573853|ref|ZP_04851195.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] gi|251846330|gb|EES74336.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786 str. D14] Length = 380 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 191/396 (48%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + D+ E + H + I + TIP+ + L N + + AS +I I IPA Sbjct: 1 MKIRILKHDLNESIQHVSKAISSRTTIPILTGIKLDVNFQGMTLTASDTDISIQAFIPAE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL E + G + I G ++ + Sbjct: 61 DQEKQIVQVERPGSVVLPAKFFVEIIKKLPSSEI---EMEVQDGFQTFIRSGSTDIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + +LKN++ +T F+++T E L G+ +++ + K Sbjct: 118 LDPEEFPVLPSIEENQVISIPGDLLKNMIRQTVFSISTNETSPILTGVLWNLADNQFKF- 176 Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + A+ + +I++ K + E+ +I+ +++ V++ ++++++ Sbjct: 177 -VATDRHRLASRIAGLDDAEGVRFSNIVIAGKTLNELSKIIPDQNTRVEIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 I+ + R++DG +P+ +IP + EL ++ L ++DR ++S + V+L + Sbjct: 236 IDRVLFYTRILDGTYPDTSKIIPTTYKTELILDTKKLSDSIDRAYLLSREEKTNIVRLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + ++GK E ++V ++ P+ I FN KY+L+++ + S +++ Sbjct: 296 MEDGTIEISSSSSELGKVTEQLDVAHFSGDPLRISFNSKYMLDVLKVVES-----EQLHI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + I+ D + Y+++P R Sbjct: 351 GFTGAMSPIIIKPVDDSQ---------SLYLILPYR 377 >gi|71064583|ref|YP_263310.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4] gi|71037568|gb|AAZ17876.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4] Length = 391 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 108/410 (26%), Positives = 203/410 (49%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++++ R +L+ + + ++++ + + ++ LQ ++ L + AS E+E+T + Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60 Query: 60 --SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G+ T+ A L DI + L AQ++ + ++ G S F L + P + Sbjct: 61 AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTT--QENERCLLTSGKSRFTLGTLPSED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS E + ++ S L +L+ +T FAMA +++RYYL G+ F ++++ +L VATD Sbjct: 119 YPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSES--RI 228 GHRLA+A I I+PRKAV E+ ++L +D++V +S ++ Sbjct: 177 GHRLALARSVIDVNADLNMQAILPRKAVIELERLASELGKMLGDQDNAVTLSFGREFLQV 236 Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 L ++ + RLIDG+FP+Y+ V+P + DK N + + RV+ Sbjct: 237 SLPFGDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVA 296 Query: 277 IMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 I+S+ + + V + S + + +N + +A+E + Y PM++ FN YL +++ Sbjct: 297 ILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGV 356 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + + SN+SV + + + YV+MPMRI Sbjct: 357 IQGD------LQMHMSQSNASVLVNQLNDEFHQ---------YVIMPMRI 391 >gi|167770839|ref|ZP_02442892.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM 17241] gi|167666879|gb|EDS11009.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM 17241] Length = 367 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 183/386 (47%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ ++ +++ + + R + KNT+ VLL+A + L + E+ I+ I A Sbjct: 1 MQLICDKQLLVDAVANVSRAVSSKNTLAALEGVLLRAKNNTLSLTGYDLELAISTEIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I +SA + D++R++ QIS + ++ T + + + + P SE+P Sbjct: 61 VREAGEIVLSARIFLDMIRRMP-SEQISISSDAKMLT--LVKGSMTEYTILGLPASEYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + LKN++ +T FA+A + + G F I + LC V+ DG+R Sbjct: 118 LPGVSETTELSIPQAALKNMISQTLFAIAVSDSKPVHTGSLFDIKGGE--LCLVSVDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + + S IVP K++ E+ ++L ++ V++ ++ I S + R Sbjct: 176 LALRREKVA--FDETLSFIVPGKSLSEVSKLLRDEEGDVELGVARRHIIFRTGSYRIVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299 L++GEF +Y+ IP +++ +L A+DR S++ S I+ +++ + ++ Sbjct: 234 LLEGEFLDYRAAIPEGGATTVKIGTRDLISAIDRASLLISDNIKSPLRMKFEEGLIKISC 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +GKA + + + ++I FN +Y+L+ + DE+ ++ S + + Sbjct: 294 STA-IGKAYDEIRCEQSGDDVEIGFNSRYMLDALKASEG-----DEIRVLINGPLSPIKL 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D+ ++++P+R+ Sbjct: 348 MPVEGDA---------FVFLVLPVRL 364 >gi|289432911|ref|YP_003462784.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT] gi|288946631|gb|ADC74328.1| DNA polymerase III, beta subunit [Dehalococcoides sp. GT] Length = 378 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS T+ A LL + V L + N +NI + +FP Sbjct: 61 IEEEGSTTIPAKLLTEFVSSLPNDKI--DLSLNAKSKALNIKCARFEARITGVDSKDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S +++ + V FA A +E R L G+ L L A DG R Sbjct: 119 IPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTL--AAADGFR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237 LAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ + Sbjct: 177 LAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291 +L+ G FP Y +IP S + V+ A +I + V+L + Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDTT 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|256389234|ref|YP_003110798.1| DNA polymerase III subunit beta [Catenulispora acidiphila DSM 44928] gi|256355460|gb|ACU68957.1| DNA polymerase III, beta subunit [Catenulispora acidiphila DSM 44928] Length = 396 Score = 296 bits (759), Expect = 3e-78, Method: Composition-based stats. Identities = 92/407 (22%), Positives = 166/407 (40%), Gaps = 39/407 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-------NDGLLEIKASGPEIEI 53 MK VER + E + R + + PV ++ +A + G + + E+ Sbjct: 1 MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60 Query: 54 TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 I A V G I + LL DI + L + + G++V +S G S F LQ+ Sbjct: 61 RAQIGADVTEPGRILIHGKLLADIAKSLPNRPVEFSTE----GSKVLLSCGSSRFTLQTL 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P ++P+ AS + V + A ++ L GI I E K+ Sbjct: 117 PVEDYPALPTMPTATGAVTASGLAG-AVSQVAIAAGRDDTIPMLTGIRVEIEGE--KITL 173 Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-----ESR 227 VATD RLAV E+ + M + ++P K + + + L+ D V ++LS E Sbjct: 174 VATDRFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGD-WVSLALSGGDAGEGL 232 Query: 228 IHLNIE---------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 I S M+ RL+ GEF Y+++ P + V +A RVS++ Sbjct: 233 IGFESGEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVSLV 292 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 + R +KL+ + ++ + D +A E+M+ + + + FN +LL+ + I + Sbjct: 293 A-DRTSPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVIDT 351 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + G+ + + Y++MP+R+ Sbjct: 352 QY-----AQLSFTVASKPAVLMGR---PALDAPAQEEFRYLMMPLRV 390 >gi|253581086|ref|ZP_04858346.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA] gi|251847622|gb|EES75592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA] Length = 371 Score = 296 bits (759), Expect = 4e-78, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 181/387 (46%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ ++L+ + + + + K T+P+ +L+ A ++ + E+ I + Sbjct: 1 MKIICQKINLLKSVNISLKAVPSKTTMPILECILIDATTNQIKFTTNDMELGIETIVDGI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I + A + Y+I+R+L D E T I+ + F + +F Sbjct: 61 IEEKGIIALDAKIFYEIIRRLPDNTVTIKTDEKLTAT---ITCEKAKFTIPGKSGEDFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S ++ LK ++ +T F++A+ E + G F I LK+ V+ DGHR Sbjct: 118 LPLIEKEESLTISQFTLKEMIRQTIFSIASNETNKLMTGELFEIKNNYLKI--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A+ +++ A ++VP K + EI +ILS + D V + S++ I + + Sbjct: 176 IAIRRMELKKDYADR-KVVVPGKTLNEISKILSGEIDDIVNIYFSKNHILFEFDQTIVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLIDGE+ ++ + ++++N +DR +++ + + + ++ + + + Sbjct: 235 RLIDGEYFRIDQMLSSDYETKIKINKKEFLDCIDRATLLVREGEKKPIIIEITDNSMELR 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ MG E++++ + I FN ++L++ + I D+ + L + + F Sbjct: 295 IDSA-MGSMNENIDIDKEGKDILIGFNPRFLIDALKVID-----DETISIYLVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D++ N Y+++P+ I Sbjct: 349 IR----------DDEENYTYLILPVNI 365 >gi|84394124|ref|ZP_00992858.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01] gi|84375270|gb|EAP92183.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01] Length = 304 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 100/323 (30%), Positives = 180/323 (55%), Gaps = 20/323 (6%) Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GSITV + DI R L D + I+ + G V + G S F L + P ++FP+ + Sbjct: 2 EAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIE 58 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + + L+ L+E+T F+MA +++RYYLNG+ F I L+ +VATDGHR+A Sbjct: 59 DWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGHRMA 116 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 V++ + A A+ IIVPRK V E++++L + + V + + S + + + + +L+ Sbjct: 117 VSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLV 175 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P + K L C LR A R +I+S+ + + V+++L ++ +T +NP Sbjct: 176 DGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDTEMRITANNP 235 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + +A E ++V ++ ++I FN Y+L++++ + ++V + +N+S I Sbjct: 236 EQEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENA 290 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 DS A YV+MP+R+ Sbjct: 291 QDDS---------AMYVVMPIRL 304 >gi|307243425|ref|ZP_07525582.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM 17678] gi|306493235|gb|EFM65231.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM 17678] Length = 367 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 189/386 (48%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + + +A R I K T+ + +L+ A D L+++ EI I I A Sbjct: 1 MKILCNQKKLAHAITNAQRAINTKTTVEILRGILISAEDNKLKVRGYDNEISIETEIEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ GSI +++ L+ +IVRKL D E + V IS S F ++ +FP+ Sbjct: 61 VELAGSIVINSKLIGEIVRKLPDS---YISIETDDNFNVFISCMSSRFKIKGISAEDFPN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +++ + +KN++ T FA AT+ NG I+ E K+ A DG+R Sbjct: 118 IDSIEVGDMLKISQADMKNMIRNTVFAAATDNSNQTFNGELIEIDSE--KINMAALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + K S IVPR + + +LS D + +++S + ++ + R Sbjct: 176 LATMTNPFKSGVDKNLSAIVPRNTLNHLNSLLSD-DGDLYIAISPRDVVFKFDNTRLVGR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 LIDGE+ +Y++++P ++ V L++AV+R S++ +S + +K++++ L +T Sbjct: 235 LIDGEYADYKSLLPKEYVTKISVETKKLQEAVERASLLFTSDKNNTIKMTVTDKLLVITS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + G A E + V + +DI FN +Y L+ I ++S + V + + I Sbjct: 295 NN-ENGNAYEEIGVEFEGDMLDIAFNSRYFLDGIKYLNS-----EYVSIEFLGAINPCVI 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + Y+++P+RI Sbjct: 349 KPLDD---------IEYTYLILPVRI 365 >gi|81251058|gb|ABB69865.1| DNA polymerase III beta chain [Nitrosospira sp. TCH711] Length = 369 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 204/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATD 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D S+TV+A L DI+R L + Q++ + + + + G S F LQ+ P + Sbjct: 61 GGKADEEYSVTVAAKKLQDILRALPERMQVTLETSD---SRLQVKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + ++ LK+L+ +AMA ++IRYYL + E+ +L VAT Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++ L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + Y+ +DI FN YLL++++N + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|309792259|ref|ZP_07686731.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6] gi|308225800|gb|EFO79556.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6] Length = 377 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 173/394 (43%), Gaps = 27/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ L + K+T+PV +VLL + G L++ A+ ++ IT I A Sbjct: 1 MKLTCLQENLKRGLATVSHAVAGKSTLPVLSNVLLATDGGRLKLAATNLDVGITHWIGAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV A LL D++ L + + V + ++ EFP Sbjct: 61 VQEEGAITVPAKLLADVIGGLPNDRVTLTL--DARTQTVKVECARYTSNIKGIEAEEFPI 118 Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + L+ + L+ +++ FA A+++ R L G+ + E +L A DG Sbjct: 119 IPTVSDRAPAVSLSPATLREAIDQVAFAAASDDTRPVLAGVLVRLREN--RLTFAAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237 RLA V + +A+ IVP +++ E+ RI + + + +++S S + + E+ + Sbjct: 177 RLATRVVQLPEAVAQPQEFIVPARSLVELARIAADSEGQISLTMSPSGGQALFHTENTEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------ 291 RLIDG+FP+++ +IP ++ L +AV S ++ VKL+L Sbjct: 237 VSRLIDGKFPDFERIIPSQYLTRSILDTAELAKAVKLASFFANPSQNVVKLTLEPGGELG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L ++ + ++G ++ + I N KYL + I I + +V Sbjct: 297 PGRLVISANAAEVGDNTGEIDGMIHGEGGQIALNVKYLADAIAAIKTA-----QVALETQ 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + + ++ +++MPM + Sbjct: 352 GSQNPGVFKPVGQE---------GYVHIVMPMSL 376 >gi|194467404|ref|ZP_03073391.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23] gi|194454440|gb|EDX43337.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23] Length = 380 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T+ RS + L + R I K TIP+ + + N+ + + S +I I I A+ Sbjct: 1 MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A DIV+KL D E G + +I+ G + F + Sbjct: 61 DADNDLTIEDTGAIVLPARFFSDIVKKLPDKKV---TIEVTSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E S L + +LK ++ +T A++ +E R L G+ + D L A Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGVHMTLK--DGILTA 175 Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + +I+P K++ E+ ++S V++ ++E+++ Sbjct: 176 VATDSHRLAQRKVVLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290 + RL++G +P +IP + D + + +++R S++S R VKLSL Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLK 295 Query: 291 -SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S + + ++ D+PD+G E + + ++I FN Y+ + + + + Sbjct: 296 PSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYMKDALRSFGQAT-----IKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + N +++ P+R Sbjct: 351 SFTSPLRPFTLVPTED--------QENFVHLITPVR 378 >gi|255326480|ref|ZP_05367562.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296] gi|255296520|gb|EET75855.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296] Length = 374 Score = 296 bits (758), Expect = 4e-78, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 169/387 (43%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L+ A+ G + I + E I A Sbjct: 1 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSAHQVIAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V +L +I R L + E + + I +NF L P ++P Sbjct: 61 VEAEGVCLVPGKILAEICRSLPNAPVEFTADE----SVIRIHCRSANFQLAGMPVVDYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V++ A++ +E L GI IN + + L +ATD +R Sbjct: 117 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 LA+ E+ ++++ K V E+ LS S D S+ + + I + + Sbjct: 174 LAMREIKWNPVNPDVQAAVLLKAKTVSEVGSTLSGSGDLSIALPAAGELIGFAAGTRRTT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 L+DG++PN + + P V ++L +A R+S+++ R ++L + + + Sbjct: 234 SVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVA-ERNTPLRLKFTQGSVAID 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A E++ + + + + +N YL + + + + V F + Sbjct: 293 AGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGLKVFGT-----EFVRFSFTDAPKPAV 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G+D+ ++ N Y+LMP+R+ Sbjct: 348 ISGQDEP---LAEDDRNYRYLLMPVRL 371 >gi|332976003|gb|EGK12874.1| DNA-directed DNA polymerase III beta subunit [Psychrobacter sp. 1501(2011)] Length = 391 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 110/410 (26%), Positives = 202/410 (49%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ R +L+ + + ++++ + V ++ L+ + LL + AS E+E++ + Sbjct: 1 MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAEVKLG 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 V G+ T+ A L++I + L ++F E I+ G S F L + P ++ Sbjct: 61 NGATGVVGATTLPASKLHEICKLLPKDTMVNFSAE--ANERCVITSGKSRFVLGTLPAAD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + L+ +VL +L+ +T FAMA +++RYYL G+ F + + +L VATD Sbjct: 119 FPVLGTPANITPLTLSRAVLMDLMAKTQFAMAIQDVRYYLTGMLFEVAQR--QLTTVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSES--RI 228 GHRLA+A I I+PRKAV E+ +++ D ++ + ++ Sbjct: 177 GHRLALARSVIDVADDFTMQAILPRKAVIELERLGNELGKLVGDNDGNLTLVFGREFLQV 236 Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 L + ++ + RLIDG+FP+Y+ V+P S +K N + + RVS Sbjct: 237 TLPFGNVNSTGQIDDAIKVTFTARLIDGKFPDYRRVMPASTNKVALANKDQMTDVLRRVS 296 Query: 277 IMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 I+S+ + + V S + + +N + +A+E++ V Y P+++ FN YL +++D Sbjct: 297 ILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVNYQGEPIELSFNAAYLQDVLDV 356 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D V + +NSSV + N+ N YV+MPMRI Sbjct: 357 LGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391 >gi|72383165|ref|YP_292520.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. NATL2A] gi|72003015|gb|AAZ58817.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. NATL2A] Length = 386 Score = 296 bits (758), Expect = 5e-78, Method: Composition-based stats. Identities = 97/400 (24%), Positives = 194/400 (48%), Gaps = 31/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK++ +S++ L R + + T PV +VLL A++ G L + + I +I Sbjct: 1 MKLSCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS+D G+IT+ A L +IV KL + + + + E +V ++ + ++ +F Sbjct: 61 ASIDSSGAITLPAKLFGEIVSKLSNDSPLVLTSD-ETSQQVELTSKSGTYQVRGMLSDDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E SF+L +L N ++ T FA +T++ + L G+ + ++ + ATDG Sbjct: 120 PELPLVENGTSFKLNPLLLSNAIKSTLFASSTDDAKQLLTGVNLTFDGYGIE--SAATDG 177 Query: 179 HRLAVAEVDIVAQIAKM---------PSIIVPRKAVGEILRILSSKDSSVKV--SLSESR 227 HRLAV ++ + +K SI +P K++ E+ + LS+ D S + + + + Sbjct: 178 HRLAVLNLNNILSDSKEIDSSIKFEKFSITLPSKSLREVEKFLSTCDISHPINFFIDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + +++R ++G +PNY ++P + + EL + +++R+++++ +K Sbjct: 238 VVFISVEDIITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNVIK 297 Query: 288 LSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 ++ S++ + ++ D D+G ES+ V Y I FN +YLL+ + I S+ Sbjct: 298 VTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGLKVIDSNL----- 352 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S + + D VN Y++MP++I Sbjct: 353 IKLSCNSPTTPAIFSPINSD--------VNFTYLVMPIQI 384 >gi|291548767|emb|CBL25029.1| DNA polymerase III, beta subunit [Ruminococcus torques L2-14] Length = 369 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 184/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++S++++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MRIICKKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVIKLTANDMELGIETTIDGI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G I ++A + +IVRKL D + E E + I+ + F + + +F Sbjct: 61 IDSRGIIALNAKIFSEIVRKLPDNDVVI---ETESDNQAIITCEKAKFNIAAQSGDDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK +V +T F++A + + G F I+ + L++ V+ DGHR Sbjct: 118 LPAIEREDFITISEFTLKEVVRQTIFSIADNDTNKMMTGELFEIDNDVLRV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + +IVP K + EI +I+ + D+ V++S +++ I + + Sbjct: 176 ISIRKIELK-DAYQPRKVIVPGKTLQEISKIIGGEADAEVEISFTKNHIVFEFDRTLVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + + VN L +DR +++ + + + + ++ + + Sbjct: 235 RLIEGEYFRIDQMLSSDYETRVHVNKKELLDCIDRATLLIKEGDKKPIIIDIKNESMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K+L++ + I D+EV ++ + F Sbjct: 295 IKSQ-IGSMDELIFCTKDGKDLMIGFNPKFLIDALRVIE-----DEEVDLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + Y+++P+ Sbjct: 349 I----------KDENQSYIYLILPV 363 >gi|147669676|ref|YP_001214494.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1] gi|146270624|gb|ABQ17616.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1] Length = 378 Score = 295 bits (757), Expect = 5e-78, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + ++ + L + + T+P++ +VL+ +DG L++ A+ E+ I+ I A Sbjct: 1 MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS T+ A LL + V L + N +NI + +FP Sbjct: 61 IEEEGSTTIPAKLLTEFVSSLPNDKI--DLSLNAKSKALNIKCARFEARITGVDSKDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S +++ + V FA A +E R L G+ L L A DG R Sbjct: 119 IPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTL--AAADGFR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237 LAV ++ ++ + +I+P + +GE+ R+ S + + V ++S+I ++++ + Sbjct: 177 LAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIEL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291 +L+ G FP Y +IP S + ++ A +I + V+L + Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTRVVIDANQFLMATKTATIFARDGGGIVRLMMNPGGDTT 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 KL ++ + ++G ++ I FN KYLL+++ + + +V + Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S +S I+ D N +V+MPM Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374 >gi|188587627|ref|YP_001919467.1| DNA polymerase III subunit beta [Clostridium botulinum E3 str. Alaska E43] gi|251779638|ref|ZP_04822558.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] gi|188497908|gb|ACD51044.1| DNA polymerase III, beta subunit [Clostridium botulinum E3 str. Alaska E43] gi|243083953|gb|EES49843.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str. 'BoNT E Beluga'] Length = 366 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 187/385 (48%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M E+ +L+ + + I K+T+ V + + A + L + S ++ I + A Sbjct: 1 MIFICEKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVKAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A + +I+RKL + + ++ + I+ S F + EFPS Sbjct: 61 VLDKGEIVIDAKIFGEIIRKLPNSDIKIETVKEDV---IQITCEKSVFNVVCMNAEEFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+ S+LKN+++ T F++A +E R L GI F + + L L VA DG+R Sbjct: 118 LPNINEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRTLNL--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I +++P K + E+ +IL D +V ++ + + I N+E+ + R Sbjct: 176 LAIRSEFLDNDI--NLEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L+DG+F NY +++P + + V + ++R S+M+ + L L + L +T Sbjct: 234 LLDGKFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N +GK E + + ++I FN +YLL+++ N+ S DEV+ + S S I Sbjct: 294 -NSQLGKVREEVLINLQGEEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD + N+ Y+++P+R Sbjct: 348 KEKDGE---------NSQYLVLPVR 363 >gi|58336356|ref|YP_192941.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM] gi|227902593|ref|ZP_04020398.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC 4796] gi|58253673|gb|AAV41910.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM] gi|227869682|gb|EEJ77103.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC 4796] Length = 376 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 173/392 (44%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L+ + L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRTTIPILSGIKLELTNEELILTGSDTDISIEIKIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +I++KL F E + + I +S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIIKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ + ++ T FA + ++ R L G+ F + +K AVAT Sbjct: 118 NYPRLPEISDSASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VKV +S+ I +L+ Sbjct: 176 DSHRLSQRIIALENGPQSETDLIIPGKSLQELARIIGETDPEVKVCPGDSQALFVIGNLA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294 RL+DG +P+ +IP + + L A++R S+++ + R V L+L ++K Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDTEKQ 295 Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ ++I FN Y+ + + V D V+ Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I KD + ++ P+R Sbjct: 351 PLRPFIINPDKKDIE--------FVQLITPVR 374 >gi|206891136|ref|YP_002247870.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii DSM 11347] gi|206743074|gb|ACI22131.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii DSM 11347] Length = 368 Score = 295 bits (757), Expect = 6e-78, Method: Composition-based stats. Identities = 106/387 (27%), Positives = 190/387 (49%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ I E L I+E+K+ +PV H L+ + + I A+ E + + A Sbjct: 1 MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLETAVKQPLEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + A Y+IV++L + +I ++ + I G SNF L S SEFP Sbjct: 61 VLEIGKACIPARKFYEIVKELDEDIEIMLLEQ-----WIKIQSGRSNFRLASLDPSEFPV 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L+ L +E+T +A + RY LNG+ F I E + V TDGHR Sbjct: 116 WPQIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQIK-EPAEFNVVGTDGHR 174 Query: 181 LAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA + + + I +I+ +K++ E+ + LS + +V + + ++ + I+ ++ Sbjct: 175 LAHFKATVEDISSIEGEKKVILSKKSLNELRKFLSDTE-TVSIHIGKTHVMCEIDGINFL 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I+G +P+Y+ VIP NDK V+ +L ++ RVS++S R AVK D L ++ Sbjct: 234 TRMIEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLIIS 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +P++G+A + + V Y P I FN +YL+E + + + D+ + + +V+ Sbjct: 294 SSDPEIGEARDELTVDYQGEPFIIGFNARYLIEAL-----ERITSDKAKITMSEPDKAVY 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + S V+MP+R+ Sbjct: 349 ITDGEAASFV-------YECVVMPLRL 368 >gi|83814447|ref|YP_444160.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855] gi|83755841|gb|ABC43954.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855] Length = 377 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 106/391 (27%), Positives = 191/391 (48%), Gaps = 24/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +D+LE L + K+T+P+ +L + + L + A+ EI I +P Sbjct: 1 MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 60 Query: 61 VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G+ I V A L D +R L D I F +++ ++ G ++ + Sbjct: 61 FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S++P E E + + +L +++T FA++ + +R + G++F ++EE+ VA Sbjct: 118 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEE--TSVVA 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDGHRL + + IVP KA RI+ D V + +S + Sbjct: 176 TDGHRLVKLTLP-ELRADTSADFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGES 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RLID +PNYQ+VIP ND+ L VN ++ AV RV + SS ++L +++D + Sbjct: 234 RVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTV 293 Query: 296 CMTVDNPD-MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++ ++ + +A E+++ Y+ PM+I FN +YL E++ N+ DEVVF L S N Sbjct: 294 TISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSPN 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ + + ++MP+ + Sbjct: 349 RAGIVLPREG------ADDEDILMLIMPVML 373 >gi|124024713|ref|YP_001013829.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. NATL1A] gi|123959781|gb|ABM74564.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. NATL1A] Length = 386 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 96/400 (24%), Positives = 192/400 (48%), Gaps = 31/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK+ +S++ L R + + T PV +VLL A++ G L + + I +I Sbjct: 1 MKLNCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS++ G+IT+ A L +IV KL + + + + E +V ++ + ++ +F Sbjct: 61 ASIESSGAITLPAKLFGEIVSKLSNDSPLVLTSD-ETSQQVELTSKSGTYQVRGMVSDDF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E SF+L +L N ++ T FA +T+E + L G+ + ++ + ATDG Sbjct: 120 PDLPLVESGNSFKLNPLLLSNAIKSTLFASSTDEAKQLLTGVNLTFDGYGIE--SAATDG 177 Query: 179 HRLAVAEVDIVAQIAKM---------PSIIVPRKAVGEILRILSSKD--SSVKVSLSESR 227 HRLAV ++ + +K SI +P K++ E+ + LS+ D + + + + Sbjct: 178 HRLAVLNLNNILSDSKEIDSSTKFEKFSITLPSKSLREVEKFLSTCDISQPINFFVDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + +++R ++G +PNY ++P + + EL + +++R+++++ +K Sbjct: 238 VVFISVEDIITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNVIK 297 Query: 288 LSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 ++ S++ + ++ D D+G ES+ V Y I FN +YLL+ + I S+ Sbjct: 298 VTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGLKVIDSNL----- 352 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S + + D VN Y++MP++I Sbjct: 353 IKLSCNSPTTPAVFSPINSD--------VNFTYLVMPIQI 384 >gi|307265437|ref|ZP_07546993.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii Rt8.B1] gi|306919551|gb|EFN49769.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii Rt8.B1] Length = 370 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 97/389 (24%), Positives = 192/389 (49%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A G ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V A + ++VRKL +G E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEGEV---KVESDSQNTVNVVCDSINFTIAGSDAVEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+L ++LK+L+ +T F +A E+ R L G+ F + + ++K AVA DG R Sbjct: 118 IPQVSRENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGFR 175 Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + + SI++P K + EI RIL K++ +++ + +++ IE+ Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILEDKETEIEIYHTANQVLFQIENTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ V L ++++R S+++ + +K + + Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N + GK +E + V ++I FN +YLL+ + I ++E+ +S + Sbjct: 296 VSS-NSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369 >gi|198282150|ref|YP_002218471.1| DNA polymerase III subunit beta [Acidithiobacillus ferrooxidans ATCC 53993] gi|218667577|ref|YP_002424516.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] gi|198246671|gb|ACH82264.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans ATCC 53993] gi|218519790|gb|ACK80376.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans ATCC 23270] Length = 365 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT++R D+L +L + I +R+ P+ HVL++A A+ E++++ + Sbjct: 1 MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSADLDHP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ V A LYDI R L + I F K+ G ++ + S F L P +FP Sbjct: 61 VDAPGTCAVPARKLYDICRALPEHTPIEFHKD---GEKLLLKAAKSRFTLHILPADQFPY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + MA + R +LNG+ + ++L+L VATDGHR Sbjct: 118 LSTHSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRL--VATDGHR 175 Query: 181 LAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + + I+PRKAV E+LRIL D + + +S++ LN + + Sbjct: 176 LAMMTLPFASSLESGSYQAILPRKAVLELLRILD--DGDIVLEMSDASFLLNDGTQQFAC 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LID ++P+Y+ VIP + + ++ + A+ + ++ S R L L +D++ + Sbjct: 234 KLIDAKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + + + V Y +DI FN +YL + ++ + + R+ S+SS Sbjct: 294 RNEEQEEGEIQIPVEYQGDTLDIAFNSRYLTD-----TTQIFPQESLRMRVKDSDSSAVF 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + N Y++MP+R+ Sbjct: 349 TPVDSN---------NPLYIIMPVRL 365 >gi|227432905|ref|ZP_03914849.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] gi|227351338|gb|EEJ41620.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. cremoris ATCC 19254] Length = 378 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 91/395 (23%), Positives = 179/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ RS ++ L R I + TIP+ ++ L ND L + S EI I +P S Sbjct: 1 MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNAEISIETTVPQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV++L + A + G I+ G S+F + Sbjct: 61 DTSAQLIITTPGGITLPATFFINIVKRLPNDAMTLNVE----GLRATITSGASSFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI + ++ A Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGN--RVKA 174 Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V TD HRL+ V + A ++I+P K+ E+ +L +D V++ S ++ + Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 + + RL++G +P +IP + ++ + ++L A+DR S++S R V+LSL Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + +T + ++G+ E +N ++I FN Y+ + + + V + Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYVRDALRIFNGKRVD-----VK 348 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + + ++ P+R Sbjct: 349 FTSNLRPFTLTPEGETDNRQ-------LQLITPVR 376 >gi|326799125|ref|YP_004316944.1| DNA polymerase III subunit beta [Sphingobacterium sp. 21] gi|326549889|gb|ADZ78274.1| DNA polymerase III, beta subunit [Sphingobacterium sp. 21] Length = 374 Score = 295 bits (756), Expect = 7e-78, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 176/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + D L I A+ + + ++ Sbjct: 1 MRFIVSTSTLLKQLQAVNGASSSSTVLPILENFLFEIKDNSLTISATDLQTSMITSLQVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V A +L + ++ L D F + + IS GD + L +FP Sbjct: 61 SKEEGKVAVPAKILIETLKTLPDQPI--AFSVDTQTFAIEISAGDGKYKLSGENADDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +SVL + +T FA++ +E+R + G+ + ++ V+TD H+ Sbjct: 119 IPVVENPSTVRIPASVLSEAISKTIFAVSNDELRPAMTGVLCQLTPQNTTF--VSTDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + ++ S+I+P+KA+ + L S+D V V + + ++ + R Sbjct: 177 L-VRYRRADVKSEQVTSMILPKKALTLLKSSLPSEDVDVAVEYNNTSAFFKFGNIHLICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP N +L ++ L ++ RV I ++ V+L ++ +L ++ + Sbjct: 236 LIDERYPDYEAVIPQVNPNKLTIDRLLLLNSLRRVVIFANKTTHQVRLRITGSELNISSE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E ++ Y +I FN K+L+E++ N+ +EVV + + N + + Sbjct: 296 DLDFANEAHERLSCQYEGEDTEIGFNAKFLIEMLSNLEC-----EEVVLEMSTPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ N ++MP+ + Sbjct: 351 LPAVEE------ENENILMLVMPVML 370 >gi|158311870|ref|YP_001504378.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] gi|158107275|gb|ABW09472.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] Length = 386 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 89/395 (22%), Positives = 172/395 (43%), Gaps = 21/395 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 M+ VER + + + R + + T + V +LL A L++ A E+ G + Sbjct: 1 MRFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGELD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G V+ +L DI R L GT + ++ G++ F L P ++ Sbjct: 61 ATVTEEGRGLVNGKMLADITRSLPAAPVDVHVD----GTRLVVACGNARFALPMLPVDDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + + V + A ++ L G+ I+ + L L ATD Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTL--AATDR 173 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232 +RLAV + + +VP + + + + LS V V+L E+ Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGSGVEVAVALGTGPSGETLAGFAG 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + RL++G FP Y+ ++P S+ ++ L +AV RV+++++ R V+L+ + Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVAA-RTAPVQLTFTP 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD--EVVDDEVVFRL 350 D L + +A E++ V Y+ + + FN YLL+ + + SD + Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPAYLLDALGALESDIVRIGFASAEDAA 352 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ + GK D + + Y+LMP+R+ Sbjct: 353 LAASKPAILTGKGGDDQT---EIPDYRYLLMPIRL 384 >gi|255020210|ref|ZP_05292279.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254970352|gb|EET27845.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 365 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 114/387 (29%), Positives = 200/387 (51%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER +L LL + +R+ P+ H+L+ A L A+ EI++ IPA Sbjct: 1 MKIRVERDTLLPLLASMVSVADRRPIQPILSHLLVTAESDSLRCVATDLEIQLLAHIPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS + A LYDI R L + + + ++ E + + G + F+LQS P +FP Sbjct: 61 VEQAGSCAIPARKLYDICRSLPESSTLDILRDKE---RIALRCGSARFHLQSLPAEQFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ ++S + + + L++ + AMA + R++LNG+ + E +L+ VATDGHR Sbjct: 118 SSNDDTLFSGQCSGTTLRDALSIAATAMAQNDARFFLNGVLLEVAEHELR--CVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 LA + A A++PS I+PRKAV E+ R+L + +++ L + I L + + Sbjct: 176 LARMTLPF-AHAAELPSYQGILPRKAVLELGRLLD--EQDIELRLGHNAIVLVNDRMQFR 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LID +P+Y+ VIP + + +V+ L+QA+ +++++SS + A L + L + Sbjct: 233 CKLIDARYPDYRRVIPLGHPERAQVDRLALKQALTQINVLSSDKNPACVLKFQTTSLSLR 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + +A + V Y ++I FN YL + S+ + E+ +L + SSV Sbjct: 293 SRNEEQEEAEVEIPVQYGGAGLEIAFNSHYLAD-----STQIFTESEIAMQLKDNGSSVL 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MP+R+ Sbjct: 348 FTPLKGD---------NPLYIVMPIRL 365 >gi|88658616|ref|YP_507795.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str. Arkansas] gi|88600073|gb|ABD45542.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str. Arkansas] Length = 369 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 210/387 (54%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M V + +L+ L + I+E++++I V V ++A D +++ ++ +I I +I A Sbjct: 1 MNFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+V G + VSA LLYDIV+KL + +I FF + + I G + F+L +FP Sbjct: 61 VNVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHR Sbjct: 119 IENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMS 238 L++ ++ + IIVP+K V EIL+I+S S + + +SLS+ +I + + Sbjct: 177 LSLTKLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILI 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++IDG FP+Y ++IP S+DK + + L A+DRVS++ +++ +KL S+KL ++ Sbjct: 237 SKVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G A E + V Y+ M I N +YL+E + I + + + +SV Sbjct: 297 AASSDQGDAREELEVDYSGEDMTIGLNARYLMEALYCIKG------KCLLSFYDAGTSVL 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ ++ N + Y++MPMRI Sbjct: 351 IQEEE--------NIDDFTYIIMPMRI 369 >gi|93004835|ref|YP_579272.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5] gi|92392513|gb|ABE73788.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5] Length = 391 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 110/410 (26%), Positives = 202/410 (49%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++++ R +L+ + + ++++ + + ++ LQ + L + AS E+E+T + Sbjct: 1 MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLFESELVLTASDLEVELTSTLKLP 60 Query: 60 --SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G+ T+ A L DI + L AQ+S + ++ G S F L + P + Sbjct: 61 AGACVEAGTTTLPATKLRDICKSLPAQAQVSLIT--QENQRCLLTSGKSRFTLGTLPSED 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +PS E + ++ S L +L+ +T FAMA +++RYYL G+ F ++++ +L VATD Sbjct: 119 YPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL-------RILSSKDSSVKVSLSES--RI 228 GHRLA+A I I+PRKAV E+ ++L KD++V +S ++ Sbjct: 177 GHRLALARSVIEVSADLSMQAILPRKAVIELERLATELGKMLGDKDNAVTLSFGREFLQV 236 Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 L ++ + RLIDG+FP+Y+ V+P + DK N + + RV+ Sbjct: 237 SLPFGDVDSAGQVSQDLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVA 296 Query: 277 IMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 I+S+ + + V + S + + +N + +A+E + Y PM++ FN YL +++ Sbjct: 297 ILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGV 356 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D + + SN+SV + + + YV+MPMRI Sbjct: 357 IQGD------LQMHMSQSNASVLVNQLNDEFHQ---------YVIMPMRI 391 >gi|110637953|ref|YP_678160.1| DNA polymerase III subunit beta [Cytophaga hutchinsonii ATCC 33406] gi|110280634|gb|ABG58820.1| DNA polymerase III, beta subunit [Cytophaga hutchinsonii ATCC 33406] Length = 374 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 187/387 (48%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I +P+ + L + DG+L + AS + + I Sbjct: 1 MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSI V A +L D ++ L + E IS + + L ++FP Sbjct: 61 AKAKGSIAVPAKILLDTLKNLPEQPVTFTIDPETYSIE--ISSDNGRYKLSGENATDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + YS ++++ +L + T FA + +E++ + G++ + E + VATDGHR Sbjct: 119 VPGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATF--VATDGHR 176 Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L DIV+++A ++I+P+KA+ + L S++++VK+ + S + ++ M Sbjct: 177 LIRYRRTDIVSEMAN--TLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID FP+Y+N IP N L + T++ ++ R+SI ++ V+L L+ +L ++ Sbjct: 235 RLIDERFPDYENAIPVDNPNVLTITRTDMMNSLKRISIYANKTTHQVRLKLAGSELQISA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ D +A E + + M+I FN K+L+E++ N+ S ++ + N + Sbjct: 295 EDLDFSNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDS-----PQISMHFSAPNRAGI 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D KD + ++MP+ + Sbjct: 350 ITPAD------KDEHEDVLMLVMPVML 370 >gi|325265441|ref|ZP_08132164.1| DNA polymerase III, beta subunit [Clostridium sp. D5] gi|324029299|gb|EGB90591.1| DNA polymerase III, beta subunit [Clostridium sp. D5] Length = 384 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 181/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++++ + + + K T+P+ +L+ A+ ++++ A+ E+ I I Sbjct: 16 MKIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVVKLTANDMELGIETRIEGD 75 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I ++A + +IVRKL D E + + I+ + F + + +F Sbjct: 76 IVERGIIALNARIFSEIVRKLPDSDV---TIETDSDNQTLITCEKAKFNIAAQSGEDFSY 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F I ED L V+ DGHR Sbjct: 133 LPVIEKEDYITVSEFTLKEVIRQTIFSIADNDTNKMMTGELFEI--EDSILKVVSLDGHR 190 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ A +IVP K + EI +I+ + ++ V +S +++ I + + Sbjct: 191 ISIRKIELKEDYA-PKKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTVVVS 249 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G++ ++ + ++R+N L +DR +++ + + + + + + + Sbjct: 250 RLIEGDYFKIDQMLSSDYETKVRINKKELLDCIDRATLLIKEGDKKPIIIDIRDESMELK 309 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + I FN K++++ + I D+EV ++ + F Sbjct: 310 IKSQ-IGSMDEEIFITKEGKDLMIGFNPKFMIDALRVID-----DEEVDLYYMNAKAPCF 363 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD K + Y+++P+ Sbjct: 364 I----------KDEKQSYIYLILPV 378 >gi|148651820|ref|YP_001278913.1| DNA polymerase III subunit beta [Psychrobacter sp. PRwf-1] gi|148570904|gb|ABQ92963.1| DNA polymerase III, beta subunit [Psychrobacter sp. PRwf-1] Length = 391 Score = 295 bits (756), Expect = 8e-78, Method: Composition-based stats. Identities = 112/410 (27%), Positives = 203/410 (49%), Gaps = 44/410 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ R +L+ + + ++++ + V ++ L+ + LL + AS E+E++ + Sbjct: 1 MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAQVKLG 60 Query: 61 VDVCGSI---TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 GSI T+ A L++I + L I+ E I+ G S F L + P ++ Sbjct: 61 NGATGSIGATTLPASKLHEICKLLPKDTMINLAAE--SNERCVINSGKSRFVLGTLPAAD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + L+ +VL +L+ +T FAMA +++RYYL G+ F +++ +L VATD Sbjct: 119 FPILGNPANITPLTLSRNVLMDLMAKTQFAMAIQDVRYYLTGMLFEVSQR--QLTTVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSES--RI 228 GHRLA+A I I+PRKAV E+ +++ D ++ +S ++ Sbjct: 177 GHRLALARSVIEVADDFSMQAILPRKAVIELERLANELGKLVGGNDGNLTLSFGREFLQV 236 Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 L + ++ + RLIDG+FP+Y+ V+P + DK N + + RVS Sbjct: 237 SLPFGNVDSTGQIDDSVRVTFTARLIDGKFPDYRRVMPNNTDKIALANKEQMTDVLRRVS 296 Query: 277 IMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 I+S+ + + V S + + +N + +A+E++ V Y P+++ FN YL +++D Sbjct: 297 ILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVKYQGAPIELSFNAAYLQDVLDV 356 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D V + +NSSV + N+ N YV+MPMRI Sbjct: 357 LGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391 >gi|229829519|ref|ZP_04455588.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM 14600] gi|229791950|gb|EEP28064.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM 14600] Length = 368 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 183/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT ++++++ + + + + T+P+ +L+ A+ +++ A+ EI I I Sbjct: 1 MKITCSQAELVKGVNIVTKAVPTRTTMPILQCILIDASANQIKLMANDMEIGIETIIDGR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I + A + +IV+KL D + E + NIS +NF + F Sbjct: 61 IEERGIIALDASIFSNIVKKLPDSQVVITTGE---SFQANISCEKANFNINGMDGENFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ LK ++ +T F++A E + G F I+ ++ V+ DGHR Sbjct: 118 LPVIPRNEPVVISEFTLKEVIRQTIFSIADNENNKLMAGELFEIHGS--RMRVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++ ++VP K + EI +I+ + +V + ++E+ I ++ Sbjct: 176 ISIRNIELKSECPD-YKVVVPGKTLNEISKIIPGSYEENVMIYITENHIIFEFGQTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLIDGE+ + ++ + ++R++ L + +DR +++ + + + ++++ + + Sbjct: 235 RLIDGEYFKIEQMLSSDYETKIRISKRELLECIDRATLLVNPGDKKPIIMNVTDGNMELN 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E++ + + I FN K+ ++ + NI D+E+ + + + F Sbjct: 295 IQSF-IGSMNENIAIDKEGRDILIGFNPKFFIDALRNID-----DEEITIYMVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+ Y+++P+ Sbjct: 349 I----------KDDDNKFLYLILPV 363 >gi|81251050|gb|ABB69859.1| DNA polymerase III beta chain [Nitrosospira sp. HBN8222A] Length = 369 Score = 295 bits (755), Expect = 8e-78, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 204/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATD 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D S+TV+A L DI+R L + Q++ + + + G S F LQ+ P + Sbjct: 61 GGKADEEYSVTVAAKKLQDILRALPEKVQVTLETSD---SRLQAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + ++ LK+L+ +AMA ++IRYYL + E+ +L VAT Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVI 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + Y+ +DI FN YLL++++N + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|213052697|ref|ZP_03345575.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 274 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 97/280 (34%), Positives = 158/280 (56%), Gaps = 7/280 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 +L+DG FP+Y+ V+P + DK L C L+QA R +I+S Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 274 >gi|83588877|ref|YP_428886.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC 39073] gi|83571791|gb|ABC18343.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC 39073] Length = 374 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 185/390 (47%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++ + R + T +LLQA++ L ++ + ++ I P Sbjct: 1 MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + A + ++VR+L + ++ V I++ S L S S+FP Sbjct: 61 VIEEGELLLPARIFTEMVRRLPPTSLSLQSLQD---NTVEIAYQQSKVQLNSIDASQFPL 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +SF +A + LK+ + + A +++R NG+ + + + + VATD HR Sbjct: 118 LPPVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTHR 177 Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + + +VP +A+ E+ R+L +D VK+++ ES+I+ E L++ Sbjct: 178 LAVYHGQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLYT 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA----VKLSLSSDKL 295 RL++G+FP+YQ VIP + + + +L V+R ++++ +A + L + L Sbjct: 238 RLLNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKSL 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T + ++G E + P+++ N +YLLE + I + + V+ L + Sbjct: 298 KITSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETLRVIDT-----ENVILELLAPLK 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V +R ++ N F +++P+RI Sbjct: 353 PVVVRPAGQE---------NYFCLILPVRI 373 >gi|89891238|ref|ZP_01202745.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria bacterium BBFL7] gi|89516550|gb|EAS19210.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria bacterium BBFL7] Length = 371 Score = 295 bits (755), Expect = 9e-78, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 174/386 (45%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S + + L +I NT+P+ + LL+ N L++ AS E + A+ Sbjct: 1 MKFIVSSSYLQKHLQMLGGVINSNNTLPILDNFLLELNGKELKVSASDMETTMLTALEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A LL D ++ + + +SH + + EFP Sbjct: 61 SEDDGSIAIPAKLLLDTLKTFPEQPLTFSAD----NGIMTVSHDKGSSEIACANGEEFPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S + L + +T FA +++R ++G+FF + + L VATD H+ Sbjct: 117 AVSLTDPSSTSILGDTLATAINKTIFAAGNDDLRPVMSGVFFQFSTDSLTF--VATDAHK 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + ++ I+P+K + + +L ++ V + +ES +S S+ R Sbjct: 175 LVRYRRE-DLAASETAEFIMPKKPLNLLKSMLQGSETEVLIEYNESNAQFTFDSTSIICR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +L + +V RVSI S+ ++L ++ +L ++ + Sbjct: 234 LIDGKYPNYEAVIPKENPNKLVIARNQFLNSVRRVSIFSNKTTHQIRLKMAGAELNISAE 293 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M I FN ++L+E+++N++ D+V + N + + Sbjct: 294 DIDYSNKADERLTCDYQGDDMQIGFNSRFLIEMLNNLNC-----DDVSLEMSMPNRAGIL 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + ++MP+ + Sbjct: 349 TPVD-----GLDEGEHVTMLVMPVML 369 >gi|46447339|ref|YP_008704.1| DNA polymerase III subunit beta [Candidatus Protochlamydia amoebophila UWE25] gi|46400980|emb|CAF24429.1| putative DNA polymerase III, beta chain [Candidatus Protochlamydia amoebophila UWE25] Length = 403 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 186/385 (48%), Gaps = 14/385 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L+ ++ +K TIP+ + L++A + L + A+ + I A Sbjct: 30 MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTEAK 89 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS T+ A L +VR+L ++ I G S F L ++++PS Sbjct: 90 ILEEGSTTLPAKRLSQLVREL---TAVNVEISTNTNEITTIIAGSSRFKLNGMSKTDYPS 146 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++FE+ S LK+L+ RT FA++ E+ RY L G+F I + + TDG R Sbjct: 147 LPDLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITF--IGTDGKR 204 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA A+ I + I+P KAV EIL+ L+ + VK+SL ++ + + + + Sbjct: 205 LARAKGVIDNDPSFSGQAIIPIKAVDEILKNLTD-EGEVKISLMADKVAIEANQMRILTK 263 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ G++P+ VIP ++ + ++ L + ++S+ ++ +V+ + +L +T + Sbjct: 264 LLSGDYPDVNRVIPEKSEIIVTLHREELSSLLRQISLFTADHNHSVRFTFIPGELKLTAN 323 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G+ SM V Y+ ++I FN + ++I+ + + V+ L + + I Sbjct: 324 TMDIGEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKG-----ETVIMGLTDAYNPGIIT 378 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + +V+MPMR+ Sbjct: 379 ---DSAELANSLDASPLFVIMPMRL 400 >gi|332685536|ref|YP_004455310.1| DNA polymerase III subunit beta [Melissococcus plutonius ATCC 35311] gi|332369545|dbj|BAK20501.1| DNA polymerase III beta subunit [Melissococcus plutonius ATCC 35311] Length = 376 Score = 295 bits (755), Expect = 1e-77, Method: Composition-based stats. Identities = 99/393 (25%), Positives = 187/393 (47%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++R+ +L+ L R I K TIP+ V + D L + S +I I + Sbjct: 1 MKLTIKRTSLLQELQTVQRAISSKTTIPILTGVKIVLADEGLYLTGSNADISIESFLTKE 60 Query: 61 VDV-------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GSI + A L +I+RKL + EN +++I G ++F + Sbjct: 61 DEKAKMTIFKTGSIVLQARFLGEILRKLPEDIVTMEVLEN---NQISIVSGKADFIVNGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + E+ +L ++ T FA++ E R L G+ F ++E+ KL A Sbjct: 118 DAENYPHLPVIDTKNQMEIPVHLLTKIINETGFAVSMHESRPILTGVHFILSEQ--KLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + I Q+ + I++P K++ E+ R +++ V++S+ E+++ + Sbjct: 176 VATDSHRLSQRIIPIE-QMVENFDIVIPGKSLQELSRSFVNEEEQVEISIMENQVLFKTK 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 ++ RL++G +P+ +IP + + E+ L A++R S++S R V+LS+S Sbjct: 235 NMYFYSRLLEGNYPDTNRLIPATFNTEVEFYGPKLLSAIERASLLSHEGRNNIVRLSISP 294 Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D + + ++P++GK ES+N +DI FN Y+ + + + + + Sbjct: 295 DSVILYGNSPEIGKVEESLNYEHITGDTLDISFNPDYMKDALRAFG-----EMNITIKFI 349 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + D VN ++ P+R Sbjct: 350 SPIRPFTLEPTEAD--------VNFVQLITPVR 374 >gi|313675527|ref|YP_004053523.1| DNA polymerase iii, beta subunit [Marivirga tractuosa DSM 4126] gi|312942225|gb|ADR21415.1| DNA polymerase III, beta subunit [Marivirga tractuosa DSM 4126] Length = 374 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 182/386 (47%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ + +I +P+ + L + DGLL I AS + + I Sbjct: 1 MKFLVSSSALLKQISSINGVISTNPMVPILENFLFEIQDGLLTITASDLQTSMITEIDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSI V A +L D ++ L + E E IS + + L ++FP Sbjct: 61 SSENGSIAVPARILMDTLKNLPEQPVTFSIDEETYSIE--ISSDNGRYKLAGENATDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E E + ++++ VL + T +A + +E+R + G++ +E + VATDG+R Sbjct: 119 VQEVENPDTVDISADVLATAINHTIYATSNDELRPAMGGVYVKFDETNTTF--VATDGNR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + II+PRKA+ + L +++ +V V + S + ++ + R Sbjct: 177 L-IRYRRVDVASDSGTGIIIPRKALSLLKNSLPAENVNVAVEFNMSNAYFKFNNIKLICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+D FP+Y+NVIP N+ +L +N ++ R+SI ++ V+L ++ +L + + Sbjct: 236 LVDERFPDYENVIPAENNIKLTINRQEFMSSLKRISIYANKTTHQVRLKINGSELQIFAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E M + ++I FN K+L+E+++N+ S EV + + N + + Sbjct: 296 DLDFSNEANEIMACEHQGDDIEIGFNAKFLVEMLNNLDSK-----EVSIDMSAPNKAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + ++MP+ + Sbjct: 351 FPSD------MDENEDILLLVMPVML 370 >gi|254977344|ref|ZP_05273816.1| DNA polymerase III subunit beta [Clostridium difficile QCD-66c26] gi|255094674|ref|ZP_05324152.1| DNA polymerase III subunit beta [Clostridium difficile CIP 107932] gi|255102901|ref|ZP_05331878.1| DNA polymerase III subunit beta [Clostridium difficile QCD-63q42] gi|255308721|ref|ZP_05352892.1| DNA polymerase III subunit beta [Clostridium difficile ATCC 43255] gi|255316428|ref|ZP_05358011.1| DNA polymerase III subunit beta [Clostridium difficile QCD-76w55] gi|255519088|ref|ZP_05386764.1| DNA polymerase III subunit beta [Clostridium difficile QCD-97b34] gi|255652271|ref|ZP_05399173.1| DNA polymerase III subunit beta [Clostridium difficile QCD-37x79] gi|255657640|ref|ZP_05403049.1| DNA polymerase III subunit beta [Clostridium difficile QCD-23m63] gi|296452679|ref|ZP_06894370.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP08] gi|296880068|ref|ZP_06904037.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP07] gi|296258461|gb|EFH05365.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP08] gi|296428935|gb|EFH14813.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile NAP07] gi|328887503|emb|CAJ66816.2| DNA polymerase III subunit beta [Clostridium difficile] Length = 368 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + +G A + I K TI + +L+ +G L++ EI I + A Sbjct: 1 MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + V A L DI+RKL D E + + I+ +S F ++ + EFP Sbjct: 61 IIEKGDVVVDARLFGDIIRKLPDS---FVEIETDSENNIYINCVNSRFKIKGYAAKEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +LKN++++T FA++ ++ + L G I + +L L VA DG+R Sbjct: 118 LPELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAIDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + + + +I+P K + ++ +LS +D +VKV +E I + R Sbjct: 176 LAVKSCSVDS-LTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTKIITR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L++G+F +Y+ ++P ++ +++N L +++R S++S S + +KLS+ + +T Sbjct: 234 LLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G E + + + +DI FN +Y +E + NI ++E+ ++ + I Sbjct: 294 -NTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVNPCII 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D VN Y+L+P+RI Sbjct: 348 KPTDD---------VNYIYLLLPVRI 364 >gi|149919820|ref|ZP_01908297.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1] gi|149819427|gb|EDM78858.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1] Length = 372 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 110/386 (28%), Positives = 188/386 (48%), Gaps = 15/386 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M+ ++++ L L A + +R++T+PV +VLL+A D L A+ I +T +P Sbjct: 1 MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVPC 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GS+T+ L +VR L GA +N + I S F L PE +FP Sbjct: 61 KVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDN---SWAQILAKRSEFKLMGMPEGDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L NL+E+T F+++T+E R LNG + V+TDGH Sbjct: 118 ELPDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLE--SDGQTATMVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ +A IIVPRK + EI ++L+ + V +++S+ + + E L++SV Sbjct: 176 RLTKFSLELEG-LALPREIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L + FP ++ V+P + V T L A+ + ++++ + VK+ L L + Sbjct: 235 KLNNVTFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNA 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DNP++G + V Y+ P+ FN YL+E + +S+D + D + Sbjct: 295 DNPELGAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLD-----FQGELDPCVL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D N+ V+ V+MPMRI Sbjct: 350 RPAPDDEGNDP---VDFLAVVMPMRI 372 >gi|282852315|ref|ZP_06261657.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1] gi|282556057|gb|EFB61677.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1] Length = 376 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + I ++ F + + Sbjct: 61 ADLVVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVRESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E ++ + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374 >gi|283797184|ref|ZP_06346337.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1] gi|291075142|gb|EFE12506.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1] gi|295090279|emb|CBK76386.1| DNA polymerase III, beta subunit [Clostridium cf. saccharolyticum K10] Length = 372 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 182/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ E+ +L + + + K T+P+ +L+ A +++ + E+ I + Sbjct: 1 MKLSFEKDSLLNGINIVLKAVPSKTTMPILECILIDATGTEIKLTGNDMELGIETQVEGL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + + A L DI+RKL G + E++ IS S F +Q EF Sbjct: 61 ILERGKVALDAKLFSDIIRKL-SGEESPIIIESDEKNNTTISCDKSVFKIQGKDGDEFSY 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++ +T F+++ + + G F +N+ +LK+ V+ DGHR Sbjct: 120 IPHIERDRYITLSQFTLKEVIRQTLFSISPNDSNKMMTGELFEVNDNELKV--VSLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + +IVP K +GEI +IL+ +S V++ S + I +S + Sbjct: 178 MSIRKIELKDHYNDI-KVIVPGKTLGEISKILNGDNESEVQIFFSSNHIMFEFDSTLVVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++ VN +++R SI+ + + ++++ + + + Sbjct: 237 RLIEGEYFRISQMLSSDYETKVNVNRRAFLDSIERASILIRENDKKPIIITITDEGMQLK 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + + + I FN K+L++ + I D+EV + + S F Sbjct: 297 MNSA-YGTMNAEVGITKFGKDIMIGFNPKFLIDALRIID-----DEEVTLYMMNPKSPCF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ N Y+++P+ Sbjct: 351 I----------KDDEENYIYLILPV 365 >gi|164686445|ref|ZP_02210473.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM 16795] gi|164604456|gb|EDQ97921.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM 16795] Length = 371 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 182/388 (46%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + +G + I K T+ + VL+ + +K EI I +PA Sbjct: 1 MKIICNQKLLANKIGIVQKAINSKTTLDLLKGVLIVTKQDEIILKGYDLEIGIESHVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI +++ L DI+RKL D E+ V I+ +S F ++ E+P Sbjct: 61 VIQEGSIVINSKLFGDIIRKLPDSFVEIETDED---NNVYINCLNSKFKIKGDSAKEYPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VLK+++++T FA + ++ + L G I ++ L VA DG+R Sbjct: 118 IPDVNEDKLYSIPQDVLKSMIKQTVFATSQDQTKPILMGELLEIENGNINL--VAIDGYR 175 Query: 181 LAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 AV + II+P K + ++ +LSS++ VKV +E I + Sbjct: 176 FAVRSCQVDNLIHEDLKAKIIIPGKTLIDVNSLLSSEEE-VKVGFNEKNAIFIINDTKIV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCM 297 RL++GEF +Y+ + P + ++++ +L +++R S++S S + +KLS+ + + Sbjct: 235 TRLLEGEFIDYKKLCPREYNSKIKLKTKDLLNSIERASLLSQSEQNNLIKLSIRDSMMAI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +N + G E +++ +DI FN +YLLE + NI +E+ ++ + Sbjct: 295 TSNN-EKGNVYEEVSLSLEGDYLDIAFNSRYLLEGLKNIDC-----EEIYIEFTTNVNPC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ D Y+L+P+RI Sbjct: 349 IIKPAD---------GTKYTYLLLPVRI 367 >gi|255324007|ref|ZP_05365132.1| DNA polymerase III, beta subunit [Corynebacterium tuberculostearicum SK141] gi|311741698|ref|ZP_07715520.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium pseudogenitalium ATCC 33035] gi|255298864|gb|EET78156.1| DNA polymerase III, beta subunit [Corynebacterium tuberculostearicum SK141] gi|311303219|gb|EFQ79300.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium pseudogenitalium ATCC 33035] Length = 393 Score = 294 bits (754), Expect = 1e-77, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 174/399 (43%), Gaps = 30/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 7 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVD 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL DIV L + + +++ ++ ++ G S F L P ++P Sbjct: 67 EPGQIAVAGKLLSDIVASLPNKE----VEISQVDSKALVTCGSSRFELPLIPLDDYPQLP 122 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + + A ++ L G+ I +D+++ ATD RLA Sbjct: 123 VLPEVTGTIQPQ-LFVEAIHQVAAAAGKDDTLPMLTGVHMDIRGKDIEM--TATDRFRLA 179 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + ++ + + + ++VP K + E R L + V++++ + L+ + Sbjct: 180 MRTLEWEPKSPDVEAKLLVPAKTLQETGRSLDPHLNIPVEIAVGTDDNIGADGLFGLHAD 239 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN Q ++P ++ + L++A+ RVS+++ R +++ + Sbjct: 240 NRETTTRMLDADFPNVQPLLPKNHTNIASIEVAPLQEAIRRVSLLT-DRNAQIRMEFADG 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ D G A E++ ++ I FN YL + + I++ D VVF Sbjct: 299 QVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLGVINT-----DRVVFGFTE 352 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ ++ + N Y+LMP+R+ Sbjct: 353 PSRPAIMIPEPEELPEADEDGNFPTPETNFTYLLMPVRL 391 >gi|116628685|ref|YP_813857.1| DNA polymerase sliding clamp subunit [Lactobacillus gasseri ATCC 33323] gi|311111575|ref|ZP_07712972.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22] gi|116094267|gb|ABJ59419.1| DNA polymerase III, beta subunit [Lactobacillus gasseri ATCC 33323] gi|311066729|gb|EFQ47069.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22] Length = 376 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + I ++ F + + Sbjct: 61 DDLVVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVRESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E ++ + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374 >gi|291521106|emb|CBK79399.1| DNA polymerase III, beta subunit [Coprococcus catus GD/7] Length = 367 Score = 294 bits (753), Expect = 1e-77, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S +L + + + + T+P+ +L+ G++++ A+ ++ I + Sbjct: 1 MKIICNKSALLTGVNTVLKAVPARTTMPILECILIDTTSGVIKLTANDMDLGIETTVDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A L +IVRKL D +N + I + F + +F + Sbjct: 61 VLDKGCIALEAKLFSEIVRKLPDSEVTIETDDN---NKALIKCEKAKFNIAGKDGEDFVA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + L+ LK ++ +T F+++ E ++G I+++ L+L V+ DG R Sbjct: 118 LPEIEKTHFITLSQFSLKEIIRQTIFSISDNESNRMMSGELLQIDQDQLRL--VSLDGQR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + ++I P K + EI +ILS D V++ ++ + + + Sbjct: 176 ISIRKISLKESYDPIKAVI-PGKTLNEISKILSGDMDDDVRIYFTDRHVLFEFDQTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 RL++GE+ +I + ++ +N L+ ++R S++ + + ++++ + M Sbjct: 235 RLLEGEYFQIDKMISSDYNTKITINKKELQGCIERASLLIRESERKPIIINVTDGSMEMK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + MG E +++ + I FN K++L+ + I D+E+ L + + Sbjct: 295 IQSA-MGSMNEDIDISKEGRDIMIGFNPKFILDALRVID-----DEEITMYLVNPKAPFI 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I K+++ + Y+++P+ Sbjct: 349 I----------KNDEQSYIYLVLPI 363 >gi|189460118|ref|ZP_03008903.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136] gi|189433160|gb|EDV02145.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136] Length = 374 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 181/372 (48%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN++P+ LL+ DG L + AS E ++ +I Sbjct: 1 MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLLELQDGTLSMTASDNETTLSTSIEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G + VS+ L + ++++ + F+ N E+ + + + + L E+P Sbjct: 61 EFDGDGHLAVSSKTLLEALKEIPEQP--LSFQINPSNLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+E + + VL V R+ FA A +E+R +NGI+F I ED+ L VA+DG Sbjct: 119 QTQELGSNAVQVNIPADVLMGGVNRSIFATADDELRPVMNGIYFDITPEDITL--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V A + + I+P+K + +L + V++ + +E+ M Sbjct: 177 HKL-VRCKTFAAHSDEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNASFTLENYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + ++ A+ RVS+ SS +KLSLS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKATIDRAAFISALRRVSVFSSQASSLIKLSLSENQMKIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y M I F +L++I++N+S+ VV L + + Sbjct: 296 AQDIDFSTSAEETIICQYEGNAMSIGFKSSFLIDILNNLSAQ-----NVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I ++++ + Sbjct: 351 VIVPEEQEENED 362 >gi|78043484|ref|YP_361491.1| DNA polymerase III subunit beta [Carboxydothermus hydrogenoformans Z-2901] gi|77995599|gb|ABB14498.1| DNA polymerase III, beta subunit [Carboxydothermus hydrogenoformans Z-2901] Length = 371 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 88/389 (22%), Positives = 185/389 (47%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK T S + E + A + + K+ PV +L +AN + + + A+ ++ + + P Sbjct: 1 MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A + GS+ +++ L DI++KL + + + NE + I +G S + ++ EF Sbjct: 61 AKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNE--GKCVIKYGASEVSVATYRPEEF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P +E SF ++ +++ FA T+E R G+ F I ++L+L VA+D Sbjct: 119 PKNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRL--VASDT 176 Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRLA + I K ++I+P + + E +RI + D + + +SE ++ + + + Sbjct: 177 HRLAFRKTFIKREDTGKNINVIIPSRTLHEAVRIFGTVDE-LLIKISEGQVEFSGNGIKL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM--SSVRIQAVKLSLSSDKL 295 + RLI+G+FPNYQ VIP + + +N +++R +++ + K L + + Sbjct: 236 TSRLIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENM 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T + + G E + + + FN +YL++++ + + +E+ L + Sbjct: 296 IITSQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLET-----EEIYLSLTGPLN 349 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + N +++P+R Sbjct: 350 PGVVKPVNDE---------NYLCLVLPVR 369 >gi|227506186|ref|ZP_03936235.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC 6940] gi|227197210|gb|EEI77258.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC 6940] Length = 393 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 172/399 (43%), Gaps = 30/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K T PV +L+ A+D LE E+ I A VD Sbjct: 7 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAAMVD 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL DIV L + ++ +++ ++V ++ G S F L P ++P Sbjct: 67 EPGRIAVAGKLLADIVASLPN-KEVEMTQQD---SKVLLTCGSSRFELPVIPLDDYPQLP 122 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + + A ++ L G+ I+ +++ ATD RLA Sbjct: 123 VLPEVTGTVNPQ-LFVEAISQVASAAGKDDTLPMLTGVHMEIHGSHVEM--TATDRFRLA 179 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + + + + ++VP K + + R L + + V++++ E L+ + Sbjct: 180 MRTFEWEPTSPDVEAKLLVPAKTLQDTGRSLDTHLNIPVEIAVGTGENIGAEGLFGLHAD 239 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN ++P ++ + L++A+ RVS+++ R +++ S Sbjct: 240 NRETTTRMLDADFPNVSPLLPKTHTAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEG 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + D GKA E++ + I FN YL + + + + D VVF Sbjct: 299 QVTL-AAGADSGKADETLPCAFTGRDEFVIAFNPSYLKDGLAVVHT-----DRVVFGFTE 352 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ ++ + N Y+LMP+R+ Sbjct: 353 PSRPAIMIPEPEEMPLADEDGVFPTPETNFTYLLMPVRL 391 >gi|332879970|ref|ZP_08447654.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332681966|gb|EGJ54879.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 373 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 107/386 (27%), Positives = 179/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I NT+P+ + L + + L I AS E + G + Sbjct: 1 MKFIVSSSYLLKKLQVFGGVINSSNTMPILDNFLFELSPNSLTISASDLETTVRGTLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GSI +SA LL DI++ + KEN + IS N+ L +EFP Sbjct: 61 SDSVGSIAISAKLLTDILKTFSEQPLTFLVKEN---NIIEISSTTGNYTLAYLDGAEFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L VL +++T FA+ +++R ++G+ F NE+ L V TD H+ Sbjct: 118 PVALPEANKVTLLGDVLATAIQKTIFAVGNDDLRPTMSGVLFQFNEQGLTF--VGTDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V + + I+P+K + + IL+ ++ V V +ES + + + R Sbjct: 176 L-VKYERADIKATEATDFIMPKKPLNILKGILAGSETQVTVEYNESNAEFSFDDMEFICR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY VIP N +L +N + +V+R+S+ S+ V+L ++ L ++ + Sbjct: 235 LIDGKYPNYDAVIPKENPNKLTLNRSQFYNSVNRLSLFSNKTTHQVRLKVAGSSLIISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D K E + Y M+I FN K+L E+I+N+ S DE++ + N + I Sbjct: 295 DVDYSNKGEERLTCNYQGDDMEIGFNSKFLKEMINNLDS-----DEILLEMSLPNRAGII 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D D + MP+ + Sbjct: 350 TPID-----GLDEGEKVLMLAMPIML 370 >gi|154503048|ref|ZP_02040108.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149] gi|153796289|gb|EDN78709.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149] Length = 369 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 181/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +S++++ + + + K T+P+ +L+ A+ ++++ A+ E+ I I Sbjct: 1 MRIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVIKLTANDMELGIETRIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I ++A + +IVRKL D + + + I+ + F + + +F Sbjct: 61 ILERGIIALNAKIFSEIVRKLPDSDVVIETTSD---NQTLITCEKAKFNIAAQSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F I LK+ V+ DGHR Sbjct: 118 LPVIEKEDYITVSEFTLKEVIRQTIFSIADNDTNKMMTGELFEIEGNILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ A+ +IVP K + EI +I+ + ++ V +S +++ I + + Sbjct: 176 ISIRKIELKENYAQ-KKVIVPGKTLQEISKIIGGEAEALVDISFTKNHIVFEFDKTVVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++R++ L +DR +++ + + + + + + Sbjct: 235 RLIEGEYFKIDQMLSSDYETKVRIHKKELLDCIDRATLLIKEGDKKPIIIDIKDGTMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E++ + + I FN K+L++ + I D+EV ++ + F Sbjct: 295 IKSQ-IGSMDETIFITKEGKDLLIGFNPKFLIDALRVID-----DEEVDLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + Y+++P+ Sbjct: 349 I----------KDENQSYIYLILPV 363 >gi|116617176|ref|YP_817547.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] gi|116096023|gb|ABJ61174.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp. mesenteroides ATCC 8293] Length = 378 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 30/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ RS ++ L R I + TIP+ ++ L ND L + S +I I +P S Sbjct: 1 MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNADISIETTVPQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV++L + A N G I+ G S+F + Sbjct: 61 DTSAQLIITTPGGITLPATFFINIVKRLPNDAMTL----NIEGLRATITSGASSFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI + +K A Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGNSVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V TD HRL+ V + A ++I+P K+ E+ +L +D V++ S ++ + Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 + + RL++G +P +IP + ++ + ++L A+DR S++S R V+LSL Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + +T + ++G+ E +N ++I FN Y+ + + + V + Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYVRDALRIFNGKRVD-----VK 348 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + + ++ P+R Sbjct: 349 FTSNLRPFTLTPEGETDNKQ-------LQLITPVR 376 >gi|291532566|emb|CBL05679.1| DNA polymerase III, beta subunit [Megamonas hypermegale ART12/1] Length = 346 Score = 294 bits (753), Expect = 2e-77, Method: Composition-based stats. Identities = 94/348 (27%), Positives = 183/348 (52%), Gaps = 6/348 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT E+ ++++ + + + + +P+ + ++A+ +E++ + EI I I A Sbjct: 1 MKITCEKKELVQAIQTVLKAVPSRPQMPILSGIYIKAHQNYIELQGTDYEISIICKIKAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+I + LY++VR L + K N+ VNI + F L + E+EFP Sbjct: 61 IETEGTIVLPGKYLYEVVRTLPG--EYVEIKNNDSDNSVNIRSNSAQFNLLNMQENEFPI 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + + N +++T FA AT+E R G I +E+ + AT+ HR Sbjct: 119 IEPLKGQIDFNLKNDIFLNFIKKTSFACATDESRPVFTGCLMDITDEN--IVMAATNMHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ + +I II+P K + E I +S+ + +++S + ++I + E++ + Sbjct: 177 LALIKENINYISDNNIKIIIPAKILNEFTHIFNSEIPTDIQISCTHNKISFSYENIYVIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 RLI+G+FP+Y VIP + +N + A+DRVS++S S + + + ++ Sbjct: 237 RLIEGQFPDYNRVIPKEFKTHVNINKNEFQSALDRVSLISRSGDYNIIHFEFVDNIVRIS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 DNP++GKA E++NV ++I FN KY+++++ I ++ + + Sbjct: 297 SDNPNIGKAEETINVDIEGPGINISFNAKYIIDVLKAIDAENFIFPLI 344 >gi|81251054|gb|ABB69862.1| DNA polymerase III beta chain [Nitrosospira sp. KAN8] Length = 369 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 119/389 (30%), Positives = 204/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-- 57 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT Sbjct: 1 MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTYTTD 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D S+TV+A L DI+R L + Q++ + + G S F LQ+ P + Sbjct: 61 DGKADEEYSVTVAAKKLQDILRALPEKMQVTLETSD---NRLQAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + ++ LK+L+ +AMA ++IRYYLN + E+ +L VAT Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLN--GLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVV 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + Y+ +DI FN YLL++++N S + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDS-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|156740759|ref|YP_001430888.1| DNA polymerase III subunit beta [Roseiflexus castenholzii DSM 13941] gi|156232087|gb|ABU56870.1| DNA polymerase III, beta subunit [Roseiflexus castenholzii DSM 13941] Length = 377 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ + ++ L + K+T+PV ++L+ ++DG L++ A+ EI IT I A Sbjct: 1 MKLSCLQENLKRGLAVVSHAVAGKSTLPVLSNILIASDDGRLKLAATNLEIGITCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++ V A LL D+V L + I + T +N+ ++ EFP+ Sbjct: 61 IEEEGAVAVPAKLLSDVVGSLPNDR-IDLTLDGRTQT-LNLKCARFESNIKGTESGEFPA 118 Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++L+ +++ FA +TEE R L G+ + D + A DG Sbjct: 119 IPTVDNRTPTAVFPPTLLRETIQQVAFAASTEETRPVLQGVQLRLR--DNRAIFAAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSM 237 RLA V++ +A+ +I+P +A+ E+ RIL+ +S V++ + S ++ + ++ + Sbjct: 177 RLAQRIVELPEPVAQPQDLIIPARALNELARILNDDESQVEMIVTHSGGQVLFHTSTVDL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291 RLIDG++P+ VIP ++ L +AV S + +V+L L Sbjct: 237 VSRLIDGKYPDVDRVIPQQYQTRAVLDTQELTKAVKLASYFTVAPSNSVRLHMEPGGDLG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ ++ + D+G ++ I N K+L + I I + ++ Sbjct: 297 PGRMTISANAVDVGDNKGQVDAMIEGEGGQIALNVKFLSDAIAAIPT-----PQLALETQ 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S + D +++MPM Sbjct: 352 SPQHPAVFKPVGAD---------GYIHIVMPM 374 >gi|300362677|ref|ZP_07058853.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri JV-V03] gi|300353668|gb|EFJ69540.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri JV-V03] Length = 376 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D +KV+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGESDPEIKVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK+SL + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMSLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E + + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374 >gi|91214601|ref|ZP_01251574.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755] gi|91187028|gb|EAS73398.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755] Length = 364 Score = 294 bits (752), Expect = 2e-77, Method: Composition-based stats. Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 17/376 (4%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L+ L +I NT+P+ + L + + L+I AS E + A+ G I V Sbjct: 2 LKNLQTLGGVINNNNTMPILDNFLFELDHNSLKISASDLETTMCSALDVESSDQGKIAVP 61 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 A LL D ++ + +N + IS + L +FPS E Sbjct: 62 ARLLLDTLKSFPEQPLTFHKLDNHT---IEISSEQGKYALAYANAEDFPSPVSIEDPSQT 118 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 L +L + +T FA +++R +NG+FF E L V TD H+L Sbjct: 119 ILVGDILATAINKTIFATGNDDLRPVMNGVFFRFTPEA--LIFVGTDAHKLVKYSRT-DI 175 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 + K I+P+K + + +L + V++ +ES + E+L ++ RL+DG++PNY+ Sbjct: 176 KADKPAEFIMPKKPLNLLKGVLLGSEEDVQIEFNESNAKFSFENLELTCRLVDGKYPNYE 235 Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIE 309 VIP N L ++ + +V RVSI S+ ++L ++ +L ++ ++ D KA E Sbjct: 236 AVIPQENPNTLTIDRSLFLSSVRRVSIFSNKTTHQIRLKIAGAELNISAEDLDYSNKAEE 295 Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 + Y + I FN K+L E+++N++S +++ ++ N + + D Sbjct: 296 RLTCDYQGDDLTIGFNSKFLTEMLNNLNS-----EDIKIKMSLPNRAGILTPVD-----G 345 Query: 370 KDNKVNAFYVLMPMRI 385 + + ++MP+ + Sbjct: 346 LEEGEHITMLVMPVML 361 >gi|284928718|ref|YP_003421240.1| DNA polymerase III subunit beta [cyanobacterium UCYN-A] gi|284809177|gb|ADB94882.1| DNA polymerase III, beta subunit [cyanobacterium UCYN-A] Length = 391 Score = 293 bits (751), Expect = 2e-77, Method: Composition-based stats. Identities = 89/405 (21%), Positives = 183/405 (45%), Gaps = 36/405 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58 MK ++D L R + + T P+ +VL+ A+ + + A + I + Sbjct: 1 MKFVCSQNDFSNNLSLVSRAVPTRPTHPILANVLMVADIVKQKISLTAFDLSLGIETSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQ--ISFFKENELGTEVNISHGDSNFYLQSFPES 116 A++ G T+ A LL DIV +L +G IS ++ + + F +++ Sbjct: 61 ANISEGGQTTLPAKLLNDIVSRLPEGEISLISEETKDNQTNLLYLKSASGKFQIRTISAD 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP E EL + + + FA + +E++ L G+ + L+ AT Sbjct: 121 EFPPLPMIENDDFIELPTITITEGLRGVLFASSNDELKQVLTGVHLKGTADSLEF--AAT 178 Query: 177 DGHRLAVAEV------------DIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVS 222 DGHRL+V E + + + S+ +P KA+ E+ +I+ ++ +++ Sbjct: 179 DGHRLSVVEAMFSSEIDNKKEQTLKTKNSNEFSVTIPAKALRELEKIIHNNNDFEVIQLQ 238 Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 + + ++ + +++R +DG +P Y +IP + + ++ N +++RV++++S + Sbjct: 239 IDDLQVIFYLGKQKLTIRKLDGNYPKYSMLIPQKFEHVISLDRKNFLNSLERVAVLASQK 298 Query: 283 IQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 VK ++ K + ++V+ D+G A ES+ DI FN KYL++ + +S+ Sbjct: 299 NNLVKCVFNNKKQIILLSVETQDLGSAEESIEAKITGESGDIAFNIKYLMDGLKALSTK- 357 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E+ +L+ N V N + Y++MP+++ Sbjct: 358 ----EIKMQLNEGNKPVIF---------NPLGGLKMTYLVMPVQM 389 >gi|291297540|ref|YP_003508818.1| DNA polymerase III subunit beta [Stackebrandtia nassauensis DSM 44728] gi|290566760|gb|ADD39725.1| DNA polymerase III, beta subunit [Stackebrandtia nassauensis DSM 44728] Length = 380 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 174/391 (44%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + + + + + + ++PV L+ +DG L I E+ +P + Sbjct: 1 MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVSSQVTLPVT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS VS LL +IV+ L G+ V I+ G + F L + P ++PS Sbjct: 61 SDASGSALVSGKLLAEIVKALPAKP----VDVAAEGSHVEITCGSARFTLPTMPVEDYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ V +T A ++ + G+ L L +ATD +R Sbjct: 117 LPDMPEAVG-TIDAAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLAL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSE------SRIHLNIE 233 +A+ ++ + ++P KA+ + + L S+ V ++L + + + Sbjct: 174 MAIRDLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVGFAAD 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + R++DG+ P +++IP + ELRVN L RVS+++ R ++L++ D Sbjct: 234 GRRTTSRVLDGQLPPLRSLIPVTYAAELRVNAAELASVARRVSLVT-ERNSPLRLNVDGD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + A E+M+ Y+ M + FN +YLL+ + IS+ VF Sbjct: 293 GLVVEAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISAPV-----AVFSFTEP 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V ++G DK + ++ + ++L P+R Sbjct: 348 GKPVTLKG-DKANADDDGDFSGYTHLLQPLR 377 >gi|126695338|ref|YP_001090224.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9301] gi|126542381|gb|ABO16623.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9301] Length = 385 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 189/399 (47%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 M+I ++++ + + + + T P+ ++LL A+ G + + + I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISVTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ G+IT+ + LL +IV KL + +S E + I +F L+ P E+ Sbjct: 61 GTIKNSGAITIPSKLLSEIVNKLPNETPVSLEVEENSDNIL-IKSDRGSFNLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIA---------KMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + I S+ +P +++ EI +++S S + S+K+ + + Sbjct: 178 HRLAVALIGNEEDIENKENLSSNVDNLSVTIPNRSLREIEKLVSLRSSEKSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K L N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTKKLIDALERIAVLADQQSSVVK 297 Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L L ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S + V Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + + + +D N + Y++MP+++ Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383 >gi|123967537|ref|YP_001008395.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. AS9601] gi|123197647|gb|ABM69288.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. AS9601] Length = 385 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 192/399 (48%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 M+I ++++ + + + + T P+ ++LL A++G + + + I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISVTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL + +S + + I +F L+ P E+ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPNETPVSLEVDENSDNIL-IKSDRGSFNLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIEPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIA---------KMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + QI S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGKEEQIENKENLSSNVDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K + N L +++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKIINFNTKKLIDSLERIAVLADQQSSVVK 297 Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L L ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S + V Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + + + +D N + Y++MP+++ Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383 >gi|188584644|ref|YP_001916189.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus JW/NM-WN-LF] gi|179349331|gb|ACB83601.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus JW/NM-WN-LF] Length = 370 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 186/386 (48%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MKI ++ ++ E L R I KNTIP +Q +D L I E+ I + Sbjct: 1 MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLST 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS+ V +DI++KL + F ++ + I G + ++ E+P Sbjct: 61 EILEQGSVVVPTK-FFDIIKKLPEDQIT--FSVDQENYLITIESGQVYYEIKGLDPEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E SF + +LK ++ +T FA++ EE + G+ + D KL VATD + Sbjct: 118 KLPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKF-DSDNKLDMVATDSY 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + I I+P+KA+G++ RI+S +D + + L+ E + + Sbjct: 177 RLAWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLFS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 +LID EFPN VIP + ++ ++ L+ +++R S+++S VKL++S + + +T Sbjct: 237 KLIDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEIT 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++P GK E + +Y + I N ++++E++ I +D+V S S + Sbjct: 297 SNSPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIE-----EDQVELEFTGSYSPMI 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR ++ D F++++P+R Sbjct: 352 IRPRENDQ---------YFHLILPVR 368 >gi|326202773|ref|ZP_08192640.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM 2782] gi|325986850|gb|EGD47679.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM 2782] Length = 366 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 187/386 (48%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++L + + + K T+P+ +LL A D ++ + EI I + A Sbjct: 1 MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNAED-KFKLTGNDLEIGIECYVEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ + DIVR+L D + N L V + +S+F ++ S +PS Sbjct: 60 IRSTGSIVINSKIFGDIVRRLPDAEVLIEVTVNNL---VVVECENSHFEIKGINPSGYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L LK+++ +T FA+ ++E R L G + +++ L V+ DG R Sbjct: 117 LPVVDKENVLTLTQGDLKDMIRQTVFAVGSDENRPVLTGSLIEVKDKE--LVIVSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + I S+I+P K + EI +IL + D V V S +++ + +S + R Sbjct: 175 LALRRKILENDIND-FSVIIPGKTLNEISKILQATDDEVSVYSSNNQVVFDAKSWRIVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LI+G+F NY +++ + ++ +N + +++R S++S + + VKL + +DK+ +T Sbjct: 234 LIEGKFLNYNSLLNKDFETKVVINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIVITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D+G E + ++I +N +L++ + I +D ++N+ + Sbjct: 294 -NADLGNVREEVKAEIEGNSLEIGYNPAFLIDALKAID-----EDRASVYFITTNAPCTL 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ + Y++ +RI Sbjct: 348 RP-------LIESNNDFAYLIQAVRI 366 >gi|238853340|ref|ZP_04643720.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4] gi|238834028|gb|EEQ26285.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4] Length = 376 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L + R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + I ++ F + + Sbjct: 61 DDLVVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVRESFQTKIVSENTEFMINGLDTN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E ++ + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374 >gi|322433662|ref|YP_004215874.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9] gi|321161389|gb|ADW67094.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9] Length = 397 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 117/391 (29%), Positives = 202/391 (51%), Gaps = 22/391 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGAI 57 +ITV R+++L L A ++ERK TIP+ + L +A++ G L I A+ + + + Sbjct: 22 EITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASNEGETGRLTITATDLDQSLRTSC 81 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 A V G+ T+ A LYD +R L +G +N V I G SN + + Sbjct: 82 AAKVKKAGACTIPARKLYDYIRLLPEGEISIKLMDNH---WVQIRAGRSNTKMVGMARAN 138 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP E ++ L+ + LK +V +T FA++ EE RY LNG + E + VATD Sbjct: 139 FPQVAEFPASGAYTLSVASLKTMVSKTIFAISNEESRYTLNGALLVLKAES--MAMVATD 196 Query: 178 GHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIES 234 GHRLA E + + I+ ++PRKA+ E+ +L+S D +++ + +S + + Sbjct: 197 GHRLAHVEKLGETLEGISGEKKTLIPRKALSELSSLLNSTDAETMQFADDDSTLFFKMGG 256 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ R + G+FPNY+ V+P N+K + V +L A+ RV+ + R A+K+ L ++ Sbjct: 257 RVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMSAIQRVAQFADERSGAIKIRLEQNE 316 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ + D G++ +++ YN P+ + FN +YL++ + I + EV + Sbjct: 317 LRLSSSSTDSGESEDTIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKDAQ 372 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ +R +D + V Y+LMPMRI Sbjct: 373 SAGQMRPEDG------NEDVKYRYILMPMRI 397 >gi|15604794|ref|NP_219578.1| DNA polymerase III subunit beta [Chlamydia trachomatis D/UW-3/CX] gi|166154296|ref|YP_001654414.1| DNA polymerase III subunit beta [Chlamydia trachomatis 434/Bu] gi|166155171|ref|YP_001653426.1| DNA polymerase III subunit beta [Chlamydia trachomatis L2b/UCH-1/proctitis] gi|14194661|sp|O84078|DPO3B_CHLTR RecName: Full=DNA polymerase III subunit beta gi|3328470|gb|AAC67666.1| DNA Pol III (beta chain) [Chlamydia trachomatis D/UW-3/CX] gi|165930284|emb|CAP03770.1| DNA polymerase III, beta chain [Chlamydia trachomatis 434/Bu] gi|165931159|emb|CAP06724.1| DNA polymerase III, beta chain [Chlamydia trachomatis L2b/UCH-1/proctitis] Length = 416 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 111 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 167 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 225 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 399 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 400 -----------DSTRSLFVIMPMRL 413 >gi|58697440|ref|ZP_00372737.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila simulans] gi|58536133|gb|EAL59745.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila simulans] Length = 353 Score = 293 bits (751), Expect = 3e-77, Method: Composition-based stats. Identities = 126/371 (33%), Positives = 210/371 (56%), Gaps = 20/371 (5%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 L ++ER+N+I V + ++A G +++ A+ +I + ++ A+V G + +SAH Sbjct: 2 LSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAATVLTEGEVKISAHT 61 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ +E+ Y + F L Sbjct: 62 LHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPALEEDNYKHDFILL 119 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHRL+ + I Sbjct: 120 NTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHRLSCIKRPKPGNIN 177 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 +I+PRK V E+L+IL + +KV LS+ +I L + +LIDG FPNY+ VI Sbjct: 178 GEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISKLIDGTFPNYKAVI 236 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313 P S DK + + L +DRVS++ S +++++K SL L + ++ + A ES+ V Sbjct: 237 PASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSNSQECSDATESIEV 296 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 YNE P++I FN +YLL+++ I ++ F L NS+ I +D S Sbjct: 297 DYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGNSATIITDEDDSSV------ 344 Query: 374 VNAFYVLMPMR 384 YV+MPMR Sbjct: 345 ---LYVVMPMR 352 >gi|320120270|gb|EFE27943.2| DNA polymerase III, beta subunit [Filifactor alocis ATCC 35896] Length = 363 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 187/385 (48%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV + + + L A + I K + + L+A + L I + EI I +I A+ Sbjct: 2 MKFTVNQREFSDALAIASKAIISKTPLDILKGFYLEAYENELTITGNNLEIGIRTSIDAA 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + A +L DI+RKL + K+ V + F ++ ++ FP+ Sbjct: 62 VETEGKSVIDAKILSDIIRKLPNEEVTVSIKDGN----VLLQCQKLKFTIKEMLDNGFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + ++L+ ++++THFA+ T+E + G + ED ++ +A DG R Sbjct: 118 VDELEEAVYQNIHPAILEEMIKKTHFAVTTDETKPVFMGELVEL--EDNQMNVIALDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + ++ + + S+I+P K + EI+R+ + + VK+ + + ++ + Sbjct: 176 LAYKKCELKSSVGSR-SMIIPGKTMVEIMRLCQTMEEDVKIGIEDRHASFLFGRTLVNTQ 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI GEF Y+ +IP +++VN A+DR +++S + VKL + +D+L +T Sbjct: 235 LIQGEFSKYEEIIPKEFSTKIKVNRQKFIDALDRATLVS--KNYLVKLRIQNDELLITAH 292 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + ++G E ++V ++I FN ++ L+ + + D+ + +++ S I+ Sbjct: 293 DNEVGNLEEILDVELEGKNLEIAFNIRFFLDSLKVME-----DEYIYMNFNTNVSPCIIK 347 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + Y+++P+RI Sbjct: 348 PE---------FETDYTYLVLPVRI 363 >gi|166032889|ref|ZP_02235718.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC 27755] gi|166027246|gb|EDR46003.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC 27755] Length = 369 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 183/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +SD+++ + + + K T+P+ +L+ A ++++ A+ E+ I I Sbjct: 1 MKIVCNKSDLVKGVNIVSKAVPGKTTMPILECILIDATTDIIKLTANDMELGIQTEIAGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +IVRKL D E + + I + F + P +EF Sbjct: 61 IIDRGMIAIDAKIFSEIVRKLPDNEV---SIETDDRLQTTIVCEKAKFDISGKPGNEFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S ++ LK ++ +T F++A E + G F I + L++ + DGHR Sbjct: 118 LPIIEKDDSIVISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNVLRV--ASLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ ++ ++VP K + EI +ILS + +S V++S + + I ++ + Sbjct: 176 ISIRKIELKNPVSD-YKMVVPGKTLIEISKILSGEAESMVEISYTNNHIVFEFDNTIVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G++ ++ D ++R+N +DR +++ + + + + + + + Sbjct: 235 RLIEGDYFKIDQMLSSDYDTKVRINKKEFLNCIDRATLLIKEGDKKPIIIDIQDEMMELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + + + I FN K+L++ + I D+EV L ++ + F Sbjct: 295 IKSQ-IGSMNEEIMISKDGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + Y+++P+ Sbjct: 349 I----------KDETESYIYLILPV 363 >gi|71914140|gb|AAZ54042.1| DNA polymerase III, beta subunit [Thermobifida fusca YX] Length = 372 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 172/387 (44%), Gaps = 29/387 (7%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGAIPASVDVCG 65 + + + R + + ++PV +LL A+D L + + E+ ++ +D G Sbjct: 2 LADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVSVDVDIDEPG 61 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125 I VS LL +IVR L + + G +V +S G + F + + P ++P+ Sbjct: 62 RILVSGKLLAEIVRNLPPQT----VEVSTDGAKVVVSCGSAKFTILTLPVEDYPTLPAMP 117 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 + + S V + A ++ L G+ I + L V+TD +RLAV E Sbjct: 118 -ALTGSVLSDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VSTDRYRLAVRE 174 Query: 186 VDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNIESLSMS 238 + + + ++ +VP K + + + L+ + + ++LS E I + Sbjct: 175 LTWTPEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIGFEGGGRRTT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL++GEFP Y+ ++P S + V +AV RVS+++ R ++LS +SD+L + Sbjct: 234 TRLLEGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVA-ERNTPLRLSFTSDRLVLE 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + +A+E ++ + I FN +LL+ ++ I SD + +S Sbjct: 293 AGTGEEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIESDV-----AHLQFTTSTKPAI 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I GK D D Y++MP+RI Sbjct: 348 ITGKPADDGTASD----YRYLIMPVRI 370 Score = 36.0 bits (82), Expect = 9.8, Method: Composition-based stats. Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 7/115 (6%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDGHRLAVAEVDIVAQIA 193 +L + V T + L G+ ++ D +L + D A VD+ Sbjct: 1 MLADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVSVDVDIDEP 60 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDGEFP 247 I+V K + EI+R L +V+VS +++ ++ S + + L ++P Sbjct: 61 GR--ILVSGKLLAEIVRNLPP--QTVEVSTDGAKVVVSCGSAKFTILTLPVEDYP 111 >gi|76788788|ref|YP_327874.1| DNA polymerase III subunit beta [Chlamydia trachomatis A/HAR-13] gi|237804424|ref|YP_002888578.1| DNA polymerase III subunit beta [Chlamydia trachomatis B/TZ1A828/OT] gi|76167318|gb|AAX50326.1| DNA polymerase III, beta chain [Chlamydia trachomatis A/HAR-13] gi|231272724|emb|CAX09628.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/TZ1A828/OT] gi|289525120|emb|CBJ14591.1| DNA polymerase III, beta chain [Chlamydia trachomatis Sweden2] Length = 416 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 111 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 167 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 225 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 399 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 400 -----------DSTRSLFVIMPMRL 413 >gi|257456818|ref|ZP_05622002.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580] gi|257445824|gb|EEV20883.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580] Length = 367 Score = 293 bits (750), Expect = 3e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 180/385 (46%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T + +L+ + A II K I + +VLL A +G L I+A+ ++ IP Sbjct: 1 MKFTFTKEVLLKEMAIAQEIISNKTAISILSNVLLIAKEGSLTIRATDIKVAFETKIPVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV I+ + G + K+ +L + F L++ +++FP Sbjct: 61 VAEEGATTVFCDKFTSIIASMPSGEIEAEQKDQKLIIRSI--SKKAKFSLKTISDNDFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V FE+ + K ++ +T FA++ +E RY++NG++ E + L ATDG R Sbjct: 119 FTDSSNVQFFEVPAKDFKEMITQTIFAVSDDETRYFMNGVYMEKKENN--LIFAATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + D + I+P K + + R SS++ + + +SE I + + S Sbjct: 177 LAFIQHDFGIALPDFKGSIIPPKILSIVQR-RSSEEGMISIGISEKNIFFRFNAYNFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ VIP S C + QA+ RV+++ + + + L +S L +T + Sbjct: 236 LIDGQFPNYERVIPESQAHHFEAQCDDFLQALKRVALLVEQKSKRIFLKISDGTLSITSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G A E + Y + I NY YL E + + S + + ++ +R Sbjct: 296 ENELGTANEEIPCKYEGEEITIALNYMYLEEPLKVLGS-----ENIRIEFTDPMRAITLR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + F+++MPM++ Sbjct: 351 PE---------TDTHFFHIIMPMQM 366 >gi|254413972|ref|ZP_05027740.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] gi|196179108|gb|EDX74104.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC 7420] Length = 391 Score = 293 bits (750), Expect = 4e-77, Method: Composition-based stats. Identities = 83/405 (20%), Positives = 184/405 (45%), Gaps = 36/405 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+T D+ L +CR + + + P+ ++LL A + + + A + I Sbjct: 1 MKLTCSSVDLQTHLSLSCRAVPSRPSHPILGNILLSACSDTQQIHLTAFNLSLGIKTRFL 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDG-------AQISFFKENELGTEVNISHGDSNFYLQ 111 A ++ G +T+ A L DIV L +G + ++ + + ++H + + Sbjct: 61 AHIETGGQVTIPAKLFQDIVSHLPEGDITVSVQPEPQETEDADPSWMITLTHASGRYQFK 120 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 +FP +S ++ +S L V+ + A +T+E + L G+ + + L+ Sbjct: 121 GTNPEDFPQLPAINGGHSLQIPTSSLSEGVQSSLVATSTDEAKQVLCGVHLTVQPDFLEF 180 Query: 172 CAVATDGHRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKV 221 ATDGHRLAVA+ A+ + +P K + E+ RILS+ ++ + + Sbjct: 181 --AATDGHRLAVAQTATQVTETETTDEAQAEPTQLTIPTKTLTELDRILSTSKPENPIAL 238 Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 + ++ + +S ++ R ++G++P Y+ +IP + V L +A++R++I++ Sbjct: 239 YYCQGQVIFDAQSAYLTSRTLEGQYPEYRALIPKKFKNHITVEKRQLLKALERIAILADP 298 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + ++L+L ++ + + G E + + ++I FN +YL+E + + + Sbjct: 299 KNKVIRLTLDKKNQHVLLTTATENGTGQEVIPAQISGKDLEIAFNSQYLIEGLKVTKTSD 358 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +++ ++S + N Y+LMP++I Sbjct: 359 -----IRLQINETHSPAILTP---------LGGQNLTYLLMPVQI 389 >gi|220927461|ref|YP_002504370.1| DNA polymerase III subunit beta [Clostridium cellulolyticum H10] gi|219997789|gb|ACL74390.1| DNA polymerase III, beta subunit [Clostridium cellulolyticum H10] Length = 366 Score = 292 bits (749), Expect = 4e-77, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 187/386 (48%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + ++L + + + K T+P+ +LL A D ++ + EI I + A Sbjct: 1 MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNA-DDKFKLTGNDLEIGIECYVEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I +++ + DIVR+L D + N L V + +S+F ++ S +PS Sbjct: 60 IRSTGCIVINSKIFGDIVRRLPDSEVLIEVTGNNL---VIVECENSHFEIKGINPSGYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E EL S LK+++ +T FA+ ++E R L G + +++ L V+ DG R Sbjct: 117 LPVVEKENILELTQSDLKDMIRQTVFAVGSDENRPVLTGSLIEVKDKE--LVIVSIDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ I S+IVP K + EI +IL D V V S +++ + +S + R Sbjct: 175 LALRRKNLENDIND-FSVIVPGKTLNEISKILQPTDEEVSVYSSNNQVVFDAKSWRIVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LI+G+F NY +++ + ++ +N + +++R S++S + + VKL + +DK+ +T Sbjct: 234 LIEGKFLNYNSLLNKDFETKVIINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIIITS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D+G E + ++I +N +L++ + I ++ ++N+ + Sbjct: 294 -NADLGNVREEVKAEIEGNALEIGYNPAFLIDALKAID-----EERASIYFITTNAPCTM 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ Y++ +RI Sbjct: 348 RP-------LIESNNAFAYLVQAVRI 366 >gi|294786218|ref|ZP_06751472.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305] gi|315225748|ref|ZP_07867536.1| DNA-directed DNA polymerase III beta subunit [Parascardovia denticolens DSM 10105] gi|294485051|gb|EFG32685.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305] gi|315119880|gb|EFT83012.1| DNA-directed DNA polymerase III beta subunit [Parascardovia denticolens DSM 10105] Length = 374 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 172/387 (44%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+ + E + RII + P+ V L+A DG L++ A E+ I A Sbjct: 1 MKVEVDSAAFSEAVSWTTRIIPTRPATPILAGVKLEAADGTLQLSAFNYEVSARNHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L G G +V I+ G S F LQ PES++P Sbjct: 61 VDESGTVVVQGKLLADIAKSLPAGKIYLSTS----GAKVTIAAGKSTFSLQLMPESDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + + A++ EE R L G+ + + K+ ATD R Sbjct: 117 LPSVPAILG-SIDGDTFSHAISQATVAISREETRPVLTGVKMVFSGD--KVQMTATDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237 L+ + A + + ++ R ++ + +V + + + + Sbjct: 174 LSRSTFTWSPSAADLETELLVRGSLMRDVARSLDASQNVVIGFDPESPTLVSFDNAGKVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP+ + + VN T+L A+ RVS+++ R +++S +L + Sbjct: 234 TAQLIDGEFPSVDRLFASDYPIHVVVNKTDLIDAIRRVSLVA-ERNAPIRMSFEGKELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D +A E++ + + P+ I FN YLLE + I + V ++ + +V Sbjct: 293 SAGSSDESQAQETLPIDMDGEPITIAFNPSYLLEGLGAI-----YEPYVRMKMVAPTKAV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+P+R Sbjct: 348 EFNGQQE---QDGDESLDYRYLLVPVR 371 >gi|332638151|ref|ZP_08417014.1| DNA-directed DNA polymerase III, beta chain [Weissella cibaria KACC 11862] Length = 376 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 178/394 (45%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ R+ ++ + + R I + ++P+ V L ++ L + S +I I IP Sbjct: 1 MQFTINRAVFIKAMNNVSRAISSRTSMPILTGVKLVLDNNGLTLTGSDTDISIETVIPVT 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V G++ + A +IV++L +F N G + I+ +S F + Sbjct: 61 DDQATLQVSEPGALVLPAAFFSNIVKRLPGE---TFTLSNTTGFQAKITSENSEFDINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E + L + L ++ +T A++ + + L G+ F + +L A Sbjct: 118 DANNYPHLPEIEVRNNLTLPAETLTEVIGQTVIAVSKQLSQPILTGVHFILAGGNLT--A 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA V IIVP ++ ++ +L + +V V ++E+++ + Sbjct: 176 VATDRHRLAQRTVAF-GDSDVSADIIVPGPSLNQLQAML-DEVETVDVRVAENQVIFQLG 233 Query: 234 -SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + + RL++G +P+ +IP L +N +L Q ++R +++S R ++ ++S Sbjct: 234 ANTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVIQFTVS 293 Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +K ++ ++P++G+ E + + I FN Y+ E + + D+++ Sbjct: 294 DEKSLISSNSPEVGRVEEQIFAAETAGDELTISFNPDYMREALKSFG-----DEQIQIGF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + ++ N ++ P+R Sbjct: 349 KTALDPFTLVPTNNET--------NFIQLITPVR 374 >gi|227502243|ref|ZP_03932292.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC 49725] gi|306834800|ref|ZP_07467864.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium accolens ATCC 49726] gi|227077067|gb|EEI15030.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC 49725] gi|304569328|gb|EFM44829.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium accolens ATCC 49726] Length = 393 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 175/399 (43%), Gaps = 30/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 7 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTKVRIAGMVD 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL DIV L + + +++ ++ ++ G S F L P ++P Sbjct: 67 EPGQIAVAGKLLSDIVATLPNKE----VEISQVDSKALVTCGSSRFELPLIPLDDYPQLP 122 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + +++ A ++ L G+ I+ +D+++ ATD RLA Sbjct: 123 VLPEVTGTIQPQ-LFAEAIQQVAAAAGKDDTLPMLTGVHMDIHGKDIEM--TATDRFRLA 179 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + ++ + + ++VP K + + R L + +++++ + L+ + Sbjct: 180 MRTLEWEPAAEDVEAKLLVPAKTLQDTGRSLDPHLNIPIEIAVGSGDNIGADGLFGLHAD 239 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN Q ++P S+ V L++A+ RVS+++ R +++ + Sbjct: 240 NRETTTRMLDADFPNVQPLLPKSHTNIASVEVAPLQEAIRRVSLLT-DRNAQIRMEFADG 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ D G A E++ ++ I FN YL + + I++ D VVF Sbjct: 299 QVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLAVINT-----DRVVFGFTE 352 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ ++ + N Y+LMP+R+ Sbjct: 353 PSRPAIMIPEPEELPEADEDGNFPTPQTNFTYLLMPVRL 391 >gi|227487661|ref|ZP_03917977.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51867] gi|227541369|ref|ZP_03971418.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51866] gi|227092355|gb|EEI27667.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51867] gi|227182920|gb|EEI63892.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum ATCC 51866] Length = 391 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 86/393 (21%), Positives = 167/393 (42%), Gaps = 21/393 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D + + + + PV +++ A D LE+ E+ + A V Sbjct: 8 FRVAQDDFADAVSWVAHNLPTRPVQPVLRGLVITATDDGLELAGFDYEVSTKVRLNAQVL 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + V+ L+ DI L G + +E ++V +S G + F L P E+PS Sbjct: 68 QNGRLAVAGKLISDITSSLAAGTV--EVETDETHSKVLLSCGKAKFELPIIPLDEYPSLP 125 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + A ++ L GI I D L ATD RLA Sbjct: 126 AMPETAGRVDP-HQFTEAVSQVATAAGKDDALPMLTGIHVDIEGSD--LIMAATDRFRLA 182 Query: 183 VAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVR 240 V ++ + S+++P + + + + + + + ++V+L I + E+ + R Sbjct: 183 VRHLEWEPSRELEKSSLLIPARTLLDTAKSMDNGLNKPLEVALGNGLIGMVTENRQTTTR 242 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+D EFPNY ++P +++ + L +A+ RVS+++ + ++++ S+ ++ +T Sbjct: 243 LLDAEFPNYNPLLPKTHNYIATCDVDELLKALRRVSLVA-DKSGQIRMTFSAGQVSLTAA 301 Query: 301 NPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N + G A E + + + I FN YL + ++ + S V+ F SN S Sbjct: 302 NSESGAAEEVLPAAFQGVEDSLVIAFNPAYLRDGLNVMRSKRVM-----FGFTDSNRSAI 356 Query: 359 IRGKDKDSKNNKDNKVNA------FYVLMPMRI 385 + + ++ + A Y+LMP+R+ Sbjct: 357 LTPEPEELPEAAADGSFASPHSAVTYLLMPVRL 389 >gi|297588056|ref|ZP_06946700.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC 53516] gi|297574745|gb|EFH93465.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC 53516] Length = 367 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 185/386 (47%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + ++L+ + A + + + TI + +L A + L + A+ E+ + Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I +++ ++ +I+RKL D +N +NI + F +Q +EFPS Sbjct: 61 IYEKGQIVINSSMIGNIIRKLPDDDIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L S L++ + +T FA + ++ R L G+ F+I + ++ VA DG+R Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMND--RIEFVALDGYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +++ + V++ IVP +A+ E+ +IL ++ + +++ I +E+ + R Sbjct: 175 VSLDCMSNVSEFE--MKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYSR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LIDG++ +Y V+ + + L+ A++R S+M+ + VKL S ++L ++ Sbjct: 231 LIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS 290 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D+GK E + + I FN KYLL+ + I DD++ + S + Sbjct: 291 -NTDIGKVDEYVKCEIGGEDLKIAFNAKYLLDGLKVID-----DDDITLNMSGSLRPMVF 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N N Y+++P+++ Sbjct: 345 KP---------LNDTNYTYLVLPVKL 361 >gi|268318564|ref|YP_003292220.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785] gi|262396939|emb|CAX65953.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785] Length = 376 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E + + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRA-----SITDSIIMSFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374 >gi|291561643|emb|CBL40442.1| DNA polymerase III, beta subunit [butyrate-producing bacterium SS3/4] Length = 372 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 182/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T +++ +L + + + K T+P+ +L+ A+ +++ A+ E+ I + Sbjct: 1 MKLTFQKTALLNGINIVLKAVPSKTTMPILECILIDASTDEIKLTANDMELGIETKVEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I RKL D + + +E V I+ +S F +Q EF Sbjct: 61 ILEKGKIALDAKLFSEIARKLSDSDSLVTIESDEKFNTV-ITCENSVFKIQGKDGEEFSY 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L+ LK ++ +T F+++ + + G F +N + L++ V+ DGHR Sbjct: 120 LPYIERNKNITLSQFSLKEVIRQTIFSISVNDSNKMMTGELFEVNGDTLRV--VSLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + + + +IVP K + EI +IL+ + V++ + I + + Sbjct: 178 MAIRKIVLKDEY-ESTKVIVPGKTLNEISKILTGDNEKEVQIFFGANHILFEFDDTIVVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ ++ +N + +++R SI+ + + L++ K+ + Sbjct: 237 RLIEGEYFKVDQMLSSDYATKVSLNKKDFLDSIERASILIRENDKKPIILNIEDSKMGLK 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + ++ + I FN K+L + + I D+EV + ++ S F Sbjct: 297 LNSS-FGTMNAEILIHKTGQDLMIGFNPKFLSDALRIID-----DEEVTLYMMNAKSPCF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I+ +D+ + Y+++P+ Sbjct: 351 IKDEDE----------SYIYLILPV 365 >gi|254455931|ref|ZP_05069360.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp. HTCC7211] gi|207082933|gb|EDZ60359.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp. HTCC7211] Length = 370 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 112/387 (28%), Positives = 206/387 (53%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V + D+ + L + +IE+++T+P+ ++LL ++ L I A+ ++ + Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNILLDVSNSKLTITATDLDLIFVHQLNNI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G T ++ ++YDIVRK G +I+ + +++ + S F L +EFP Sbjct: 61 EVLEEGKTTTTSSIMYDIVRKFSSGKKINLSLTD--ISKLQVESEKSIFNLNCISATEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATD 177 T E F + S L L+ + F+++ +E R+YL+GI+FH E + L AVATD Sbjct: 119 LTDENFNENEFVIKSKQLLKLLNKCKFSVSNDETRHYLSGIYFHQTEVEDKNYLTAVATD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HR++++++ + Q II+P+K + ++ +L S D VKVS +S+I + + + Sbjct: 179 SHRMSISKIRL-GQKIDFEPIILPKKTIFQLCSLLDSYDGDVKVSNLKSKIKFELNNSIL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG+FPNY VIP +N K+L ++ +VDRV+ +S + VK +LS D L + Sbjct: 238 ISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLNSVDRVASVSLDKKDGVKFNLSKDILDL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+N + G E++NV ++ ++I FN +YL+++ + + V + + S Sbjct: 298 SVNNTNSGDGKETLNVKFD-HDLEISFNSRYLIDVASQLDG-----ERVEIFFNDTGSPA 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ ++ +V+MPM+ Sbjct: 352 LIKDP---------GDFDSIFVVMPMK 369 >gi|254526327|ref|ZP_05138379.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT 9202] gi|221537751|gb|EEE40204.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT 9202] Length = 385 Score = 292 bits (749), Expect = 5e-77, Method: Composition-based stats. Identities = 96/399 (24%), Positives = 191/399 (47%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 M+I ++++ + + + + T P+ ++LL A++G + + + I + Sbjct: 1 MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL +S + + + I +F L+ P E+ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPTETPVSLEVDEDSDNIL-IKSDRGSFTLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + I S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGNEEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K L N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297 Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L L ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S + V Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + + + +D N + Y++MP+++ Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383 >gi|260774540|ref|ZP_05883453.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14] gi|260610446|gb|EEX35652.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14] Length = 308 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 103/323 (31%), Positives = 182/323 (56%), Gaps = 20/323 (6%) Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GSITV A DI R L D A I+ E G ++I G S F L + P ++FP+ + Sbjct: 6 EAGSITVPARKFLDICRGLPDSAVITVLLE---GDRISIRSGRSRFSLATLPANDFPNIE 62 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + + + L+ L+E+T F+MA +++RYYLNG+ F I+ L+ AVATDGHR+A Sbjct: 63 DWQSDIDITVTQAELRGLIEKTQFSMANQDVRYYLNGMMFEIDASTLR--AVATDGHRMA 120 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 VA+ + +Q II PRK + E++++L + + V + + S + + + +L+ Sbjct: 121 VAQTTV-SQALANKQIIFPRKGILELVKLLDAPEQPVVLQIGASNLRAEVNQFVFTSKLV 179 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG FP+Y+ V+P + +K L C LRQA R +I+S+ + + V+++L+ + +T +NP Sbjct: 180 DGRFPDYRRVLPQNTNKTLITGCDELRQAFSRAAILSNEKFRGVRVNLAEGTMRITANNP 239 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + +A E ++V + ++I FN Y++++++ + D+V + +N+S I Sbjct: 240 EQEEAEEMLDVSFTGEAIEIGFNVSYVIDVLNTLRC-----DQVRISMSDANASALIENV 294 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 + DS A YV+MP+R+ Sbjct: 295 EDDS---------AMYVVMPIRL 308 >gi|237802508|ref|YP_002887702.1| DNA polymerase III subunit beta [Chlamydia trachomatis B/Jali20/OT] gi|231273742|emb|CAX10522.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/Jali20/OT] Length = 416 Score = 292 bits (748), Expect = 5e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 51 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 111 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMAIITSGSSCFRLLSMGKEDFPM 167 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 225 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 399 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 400 -----------DSTRSLFVIMPMRL 413 >gi|153815424|ref|ZP_01968092.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756] gi|317500886|ref|ZP_07959098.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|331089212|ref|ZP_08338114.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] gi|145847283|gb|EDK24201.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756] gi|316897766|gb|EFV19825.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA] gi|330405764|gb|EGG85293.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA] Length = 369 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 182/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + + + + K T+P+ +L+ A+ ++++ A+ E+ I +I Sbjct: 1 MKIICTKQNLAKGVSIVSKAVPSKTTMPILECILIDASTDVIKLTANDMELGIETSIDGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + ++A + +IVRKL D I + + + I+ G + F + S P EF Sbjct: 61 IIERGILALNAKIFAEIVRKLPDNEII---IDTQGDNQALITGGKAKFKIASLPGDEFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A + + G F I + LK+ V+ DGHR Sbjct: 118 LPNIEKDDFITVSEFTLKEVIRQTIFSIADSDTNKMMTGELFEIEDNILKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++++ A +IVP K + EI +I+ + ++ V +S +++ I + + Sbjct: 176 ISIRKIELKDSYA-PKKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTIVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++++N L + +DR +++ + + + + + + Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVKINKRELLECIDRATLLIKEGDKKPLIIDIRDESMEFK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G E + + I FN K+L+E + I D+EV ++ + F Sbjct: 295 IKSQ-VGSMDEDIMCIKEGKDLLIGFNPKFLIEALRVIE-----DEEVDLYFMNAKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + Y+++P+ Sbjct: 349 I----------KDEAQSYIYLILPV 363 >gi|227889155|ref|ZP_04006960.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] gi|227850384|gb|EEJ60470.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200] Length = 376 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEKLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + + I ++ F + + Sbjct: 61 DDLIVQSKGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E + + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374 >gi|23335940|ref|ZP_00121171.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bifidobacterium longum DJO10A] gi|23465221|ref|NP_695824.1| DNA polymerase III subunit beta [Bifidobacterium longum NCC2705] gi|189440297|ref|YP_001955378.1| DNA polymerase III subunit beta [Bifidobacterium longum DJO10A] gi|227547510|ref|ZP_03977559.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239622841|ref|ZP_04665872.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. infantis CCUG 52486] gi|296453189|ref|YP_003660332.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. longum JDM301] gi|312133631|ref|YP_004000970.1| dnan [Bifidobacterium longum subsp. longum BBMN68] gi|317482360|ref|ZP_07941380.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|322688193|ref|YP_004207927.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. infantis 157F] gi|322690195|ref|YP_004219765.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|23325849|gb|AAN24460.1| DNA polymerase III, beta chain [Bifidobacterium longum NCC2705] gi|189428732|gb|ACD98880.1| DNA polymerase sliding clamp subunit [Bifidobacterium longum DJO10A] gi|227212025|gb|EEI79921.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis ATCC 55813] gi|239514838|gb|EEQ54705.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp. infantis CCUG 52486] gi|291517732|emb|CBK71348.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. longum F8] gi|296182620|gb|ADG99501.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. longum JDM301] gi|311772889|gb|ADQ02377.1| DnaN [Bifidobacterium longum subsp. longum BBMN68] gi|316916240|gb|EFV37642.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA] gi|320455051|dbj|BAJ65673.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. longum JCM 1217] gi|320459529|dbj|BAJ70149.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. infantis 157F] Length = 374 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 170/387 (43%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + + P+ V L+A DG L+ A EI I A Sbjct: 1 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L+ G+ + I+ G S F LQ P++E+P Sbjct: 61 VDEAGSVLVQGKLLADITKSLRSEKTYLVTD----GSTLTITSGKSKFTLQLMPDTEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A++ EE R L G+ + K+ +TD R Sbjct: 117 LPVVPAMLGQV-DAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237 LA A Q + + + R ++ + + + ++++ + + Sbjct: 174 LARATFTWTPQNPDVDTTTLVRGSLLKDVARALDEHQNIRLDFDADSPTLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + + VN +L A+ RV++++ R ++++ + ++ + Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMTFTGQEVAL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D +A E++++ + + + FN YL E + V + V ++ + V Sbjct: 293 SAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGLSA-----VTEPFVRIKMTTPVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|326802616|ref|YP_004320434.1| DNA polymerase III, beta subunit [Aerococcus urinae ACS-120-V-Col10a] gi|326651483|gb|AEA01666.1| DNA polymerase III, beta subunit [Aerococcus urinae ACS-120-V-Col10a] Length = 383 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 190/396 (47%), Gaps = 29/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK T++RS ++ L + R I + TIP+ + + D + + S I I I Sbjct: 1 MKFTIKRSIFVDHLNNVQRAISSRTTIPILTGIKIAVLDSGIILTGSDSTISIEIYISKE 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 S+ GSI + + L DIV+KL + ++N + I G+S F L Sbjct: 61 DESNQLSIAETGSIVLPSRFLGDIVKKLPEDQLTLEVQDN---LQTVIRSGESVFNLNGT 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 SE+P+ E + ++ L + K +V T +++ ++IR G+ F + +E LK A Sbjct: 118 AGSEYPTLPEIDADSTYVLPGHLFKRVVNHTIISVSNQQIRPLFTGVHFILADEQLK--A 175 Query: 174 VATDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 V+TD HRL+ V + K I +P + + E+ R++ + +++ ++++++ Sbjct: 176 VSTDSHRLSQRIVPLTMPEESQGKALEINIPGQTLTELTRLVDDNE-DIEMMVTDNQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 I+++ + RL++G +P+ ++ + +++V+ L AV+R I+S + VKLS Sbjct: 235 KIDNVYLYSRLLEGNYPDTDRLLSLDYNTKIKVDAQELVHAVERALILSHQGKNNVVKLS 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 LS ++ ++ + ++G E ++ + + ++I FN YL E + + + VV Sbjct: 295 LSQEEAILSGHSSEIGYVKEKLSLLSFEGDDLEISFNPDYLREALRSFGGQD-----VVI 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 R + S + + + ++ N ++ P+R Sbjct: 350 RFVNPTHSFILTPSEDE------DEFNMVQLITPIR 379 >gi|81251046|gb|ABB69856.1| DNA polymerase III beta chain [Nitrosospira sp. 9SS1] Length = 369 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 117/389 (30%), Positives = 205/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTD 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D S+TV+A L DI+R L + +++ + + + G S F LQ+ P + Sbjct: 61 GGKADEEYSVTVAAKKLQDILRALPEKMRVTLETSD---SRLQAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + + LK+L+ +AMA ++IRYYLN + E+ +L VAT Sbjct: 118 FPKFPESNEKQGTVTVQQKELKHLLSMVQYAMAHQDIRYYLN--GLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + + +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALMMLETSL-ERKEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVV 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L+++ L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTANNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + YN +DI FN YLL++++N S + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYNGEGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|329666393|gb|AEB92341.1| DNA polymerase III, beta chain [Lactobacillus johnsonii DPC 6026] Length = 376 Score = 292 bits (748), Expect = 6e-77, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E + + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374 >gi|210612900|ref|ZP_03289510.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787] gi|210151377|gb|EEA82385.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787] Length = 369 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 184/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++D+++ + + + K++ + +LL+A + + + E+ I + + Sbjct: 1 MKIICKKADLVKAVQTVSKAVPMKSSTTILECILLRAEKEKITLTGNNLELGIETMMSGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GSI + A + +IVRKL +G + E + + + + + L E+ Sbjct: 61 IEEEGSIAIQAKVFGEIVRKLPEGDVVLETGEKD---QATVRCKKTKYNLAVKSAEEYTC 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E ++ LK + +T F++A + + G + IN ++LK+ VA DGHR Sbjct: 118 IPDVERKNRVMISEFDLKEAIRQTIFSVADTTTKKAMTGELWEINGKELKI--VALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + + +IVP K + E+++I+ + V V +E+ I IE+ Sbjct: 176 ISLRKVKLKKEYEPR-KVIVPGKNLAEMIKIIGGDPEKEVAVYFTENHIQFEIENTRAIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLSSDKLCMT 298 RLI+GE+ + ++ +++V L++ +DR ++ + + L++ + L + Sbjct: 235 RLIEGEYLKVEQLLSKDYGTKIKVQKKELQECIDRAGLLLKDDAKKPIILNIEENILSLE 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V +MG ESM + + I FN K+LLE++ I D+EV ++ + Sbjct: 295 V-ASNMGSMNESMFIVKEGEKLRIGFNPKFLLEMLRVID-----DEEVFMYFTNAKTPCT 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D K + Y+++P+ + Sbjct: 349 VR----------DEKDSYVYLVLPVNL 365 >gi|326390363|ref|ZP_08211922.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW 200] gi|325993640|gb|EGD52073.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW 200] Length = 370 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 191/389 (49%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + E + A R + + T+P+ + + A ++ + +I I IPA Sbjct: 1 MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKSQVKFSGTDLDIGIECQIPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V A + ++VRKL +G E++ VN+ NF + EFP Sbjct: 61 VEEEGEIVVPAKIFSELVRKLPEGDV---KIESDSQNTVNVVCDSINFTIAGSDALEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF+L ++LK+L+ +T F +A E+ R L G+ F + + ++K AVA DG R Sbjct: 118 IPKVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGFR 175 Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +A+ + + SI++P K + EI RIL +++ +++ + +++ IE+ Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTK 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RL++G F NY V+P E+ V L ++++R S+++ + +K + + Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N + GK +E + V ++I FN +YLL+ + I ++E+ +S + Sbjct: 296 VSS-NSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ + Y+++P+++ Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369 >gi|157412339|ref|YP_001483205.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9215] gi|157386914|gb|ABV49619.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9215] Length = 385 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 192/399 (48%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M+I +++ + + + + T P+ ++LL A++G + + + I + Sbjct: 1 MEIICNQNEFNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +V G+IT+ + LL +IV KL +S + + + I +F L+ P E+ Sbjct: 61 GTVKNSGAITIPSKLLSEIVNKLPTETPVSLAVDEDSDNIL-IKSDRGSFTLKGIPSDEY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA + ++ + L G+ F L+ + +TDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177 Query: 179 HRLAVAEV---------DIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAVA + + ++ S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVALIGNKEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP S K L N L A++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297 Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L L ++ D D+G A ES+ V Y+ DI FN +YLLE + I+S + V Sbjct: 298 IKLDDKDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + + + +D N + Y++MP+++ Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383 >gi|330718063|ref|ZP_08312663.1| DNA polymerase III, beta subunit [Leuconostoc fallax KCTC 3537] Length = 377 Score = 292 bits (748), Expect = 7e-77, Method: Composition-based stats. Identities = 86/394 (21%), Positives = 177/394 (44%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++ R + ++ L R I + TIP+ ++ ++ +D L + S +I I I Sbjct: 1 MHFSINRQNFIKSLNAVSRAISSRTTIPILTNIKIEVSDTQLTLTGSNADISIQTRILDS 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +I+++L F+ G I+ G S+F + Sbjct: 61 DTTAELIIKETGGITLPATFFSNIIKRLPADT----FELKLEGLRAAITSGASSFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E E S ++++ L +++ +T + +T+E R L G+ F + + +K + Sbjct: 117 DIQNYPQLPEVEDAESLSVSAAQLTDIISQTIISASTQESRPILTGVHFQLTGDSVK--S 174 Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + A+ +IVP K+ E+ +L +D V + L+ ++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGADAQVNADVIVPAKSFKELGAMLEGQD-RVVIKLTANQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + + RL++G +P +IP + EL +N L A+DR +++S R V+L++ Sbjct: 234 GNTTFYSRLLEGNYPETDRLIPTESTTELMINAMTLLGAIDRAALLSHESRNNVVQLTMK 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + ++ + ++G+ E+++ ++I FN Y+ + + D EV + Sbjct: 294 DNTAVLSGMSQEIGQVKEALDAKKVEGDDLEISFNPDYVRDALRVFH-----DKEVELQF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ I + ++ P+R Sbjct: 349 TSNLRPFTITPAGETDNKQ-------LQLITPVR 375 >gi|219846975|ref|YP_002461408.1| DNA polymerase III subunit beta [Chloroflexus aggregans DSM 9485] gi|219541234|gb|ACL22972.1| DNA polymerase III, beta subunit [Chloroflexus aggregans DSM 9485] Length = 378 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 90/393 (22%), Positives = 170/393 (43%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T + D+ L + K+ T+PV +VLL ++G L++ A+ E+ I I A Sbjct: 1 MKLTCMQDDLKRGLAAISHAVAGKSATLPVLANVLLATDNGRLKLTATNLEVGINRWIGA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G++ V A LL D+V L + + + + G ++ EFP Sbjct: 61 NIAQAGAVAVPAKLLADVVGGLPNDTVTLTL--DPKTQTLRVECGRFVSNIKGVDADEFP 118 Query: 120 STKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S L + + + +E+ FA AT+E R L G+ + L L VA DG Sbjct: 119 SLPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVLVRTRDRQLTL--VAADG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236 RLA+ + + +A ++P + + E+ RI+ + V + S + + E+ Sbjct: 177 FRLAMRTIPLAETVAHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTENTE 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS----- 291 + RLI+G FP+++ +IP ++ T L +AV S +S VKL + Sbjct: 237 VVSRLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAGEM 296 Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ ++ ++ ++G ++ I N K+L + I + S+ ++ F + Sbjct: 297 GPGRIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGSN-----QIAFEM 351 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S+ S + D +++MPM Sbjct: 352 QSAQSPAVFKPVGHD---------GYIHIVMPM 375 >gi|126697568|ref|YP_001086465.1| DNA polymerase III subunit beta [Clostridium difficile 630] gi|260681771|ref|YP_003213056.1| DNA polymerase III subunit beta [Clostridium difficile CD196] gi|260207934|emb|CBA60043.1| DNA polymerase III, beta chain [Clostridium difficile CD196] Length = 402 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 190/385 (49%), Gaps = 23/385 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 KI + + +G A + I K TI + +L+ +G L++ EI I + A + Sbjct: 36 KIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAEI 95 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + V A L DI+RKL D E + + I+ +S F ++ + EFP Sbjct: 96 IEKGDVVVDARLFGDIIRKLPDS---FVEIETDSENNIYINCVNSRFKIKGYAAKEFPKL 152 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + + +LKN++++T FA++ ++ + L G I + +L L VA DG+RL Sbjct: 153 PELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAIDGYRL 210 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 AV + + + + +I+P K + ++ +LS +D +VKV +E I + RL Sbjct: 211 AVKSCSVDS-LTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTKIITRL 268 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVD 300 ++G+F +Y+ ++P ++ +++N L +++R S++S S + +KLS+ + +T Sbjct: 269 LEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITS- 327 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + G E + + + +DI FN +Y +E + NI ++E+ ++ + I+ Sbjct: 328 NTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVNPCIIK 382 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D VN Y+L+P+RI Sbjct: 383 PTDD---------VNYIYLLLPVRI 398 >gi|42518086|ref|NP_964016.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533] gi|41582370|gb|AAS07982.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533] Length = 376 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 96/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ LE L +A R I + TIP+ + L D +L + S +I I IP + Sbjct: 1 MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V GSI + A +IV+KL F E + + I ++ F + + Sbjct: 61 DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF+++ + ++ T FA+AT+E R L G+ F N +K AVAT Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ ++ + +I+P K++ E+ RI+ D + V+ E+++ + +++ Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293 RL+DG++P+ +IP + + L ++++R S+++ R VK++L + Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+P++G E + + I FN YL E + + D ++ Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +D VN ++ P+R Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374 >gi|256826462|ref|YP_003150421.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641] gi|256582605|gb|ACU93739.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641] Length = 365 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 177/387 (45%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + D L + ++T+P+ + +L ++A+ ++ I +IPA Sbjct: 1 MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIPAF 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL D+V+ L + A +I S+F L++F +FP Sbjct: 61 IEEEGEAVIPSKLLTDVVKSLPEAAVHVETTTETA----SIMCESSSFSLKTFDPQDFPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + S ++V+R ++ +E R L G+ ++ D L VATD +R Sbjct: 117 FPEVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVH--DGMLRMVATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV ++D ++I + L LS S+ ++L+E++I + + + R Sbjct: 175 LAVTDIDFTTPSEDFTAVI--SGSFMSDLAGLSDTGESLTLALAENQIVVTYDGTTFINR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMT 298 I+G +P Y +IP + + N L +AV R S++S+ + V+ ++ + ++ Sbjct: 233 RIEGNYPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQIS 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D+G+A E++ +I FN+ Y+++ + +I + + V L S Sbjct: 292 TASQDVGEAHETLGAKIQGEDEEIAFNFGYVIDGLSSIET-----ESVQLELQGSMKPGI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +++ N Y++MP+R+ Sbjct: 347 LRATEQE---------NFLYLIMPVRL 364 >gi|319940694|ref|ZP_08015036.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis 3_1_45B] gi|319805845|gb|EFW02612.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis 3_1_45B] Length = 372 Score = 292 bits (747), Expect = 7e-77, Method: Composition-based stats. Identities = 111/390 (28%), Positives = 198/390 (50%), Gaps = 23/390 (5%) Query: 1 MKITVER-SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +++ + I+ER ++PV ++L++ + + +I+I + Sbjct: 1 MKLISSPVEALIKPVRSVAGIVERNQSLPVVSNILIEQKGVDVTFSTTDLDIQIRTSASV 60 Query: 60 SVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+ GSIT++A +I+ L+ + ++ ++ S G +F +Q+ P +F Sbjct: 61 GVEGCEGSITLNAQKFSEILGALRPLDTLDVDIDDGGLADLTTSGG--HFSMQTLPAQDF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P K + +F L + L+ L+ T FAMA ++IRY+L G+ F + E KL AVATD Sbjct: 119 PVLKIMPWTTTFTLPAKTLRYLLTMTAFAMAPKDIRYFLMGVLFVV--EGAKLIAVATDT 176 Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRLA E +I IVPRK V E+LRIL D+ V V++ +++I N + Sbjct: 177 HRLAYCEAEIDGLNQETKIEAIVPRKTVRELLRILPEDDTPVTVNVGDTQIGFNFAGIEF 236 Query: 238 SVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +LI+G+FP+YQ V+P +N + + +N L A+ RV I+++ R ++ + L Sbjct: 237 VSKLIEGKFPDYQRVMPTLDTNPQCVSINREELLLALRRVQILTNERFHGIRWLFTKGSL 296 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N + +A + + V + +DI FN Y++E+++N+ + EV F ++ Sbjct: 297 TVQGSNAEQEEASQKLAVNWEWDDLDIGFNLLYMIELLNNLK-----NSEVNFHFAATPK 351 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SV + + S Y++MPMRI Sbjct: 352 SVLVTMPESSS---------FRYLIMPMRI 372 >gi|226942153|ref|YP_002797227.1| DNA polymerase III subunit beta [Laribacter hongkongensis HLHK9] gi|226717080|gb|ACO76218.1| DnaN [Laribacter hongkongensis HLHK9] Length = 377 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 104/379 (27%), Positives = 197/379 (51%), Gaps = 15/379 (3%) Query: 1 MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+I +R +L+ L I+ER++T+P+ +VL++ + L A+ EI+IT A P Sbjct: 1 MQILQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPE 60 Query: 60 SVDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + +T SA DI+R + D ++ E+ + + G S F LQS P +F Sbjct: 61 PIAGPDFRLTTSAKKFSDILRAIPDRTTVTLDHED---GRLTVKAGKSRFNLQSLPADDF 117 Query: 119 PST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P + + F L K L+ + +AMA ++IRYYLNG+ + +KL VATD Sbjct: 118 PLLTQSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKL--VATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA A++ + + +I+PRK + E+ ++L+ D ++ ++L +++ + Sbjct: 176 GHRLAFAQMTLDTPLP-AAEVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVI 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG+FP+Y VIP NDK + L+QA+ R +I+++ + + V+L++ + +L + Sbjct: 235 VSKVVDGKFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + +A E + + Y ++I FN YL +++ + D + +N S Sbjct: 295 QCNNSEQEEAEEELEIAYGGSGLEIGFNITYLQDVLAALH-----VDTLQLAFGDANRSA 349 Query: 358 FIR-GKDKDSKNNKDNKVN 375 + + + + ++D N Sbjct: 350 LVTIPRQSELQVHRDADAN 368 >gi|323486748|ref|ZP_08092067.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum WAL-14163] gi|323694890|ref|ZP_08109040.1| DNA polymerase III [Clostridium symbiosum WAL-14673] gi|323399887|gb|EGA92266.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum WAL-14163] gi|323500980|gb|EGB16892.1| DNA polymerase III [Clostridium symbiosum WAL-14673] Length = 372 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 178/385 (46%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ + +++ + + + K T+P+ +L+ A +++ + E+ I + Sbjct: 1 MKLSFNKDNLMNGINIVLKAVSSKTTMPILECILIDATSNEIKLTGNDMELGIETKVEGM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A LL DI+RKL + + +E V I+ S F +Q EF Sbjct: 61 ILERGKIALDAKLLSDIIRKLSGDESLITIESDEKFNTV-ITCEKSVFKIQGKDGEEFSY 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++ +T F+ + + + G +N+ LK+ V+ DGHR Sbjct: 120 IPHIERDNYICLSQFTLKEVIRQTLFSTSPNDSNKMMTGELIEVNDNILKV--VSLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + Q + +IVP K +GEI +IL+ +S V + + + I + + Sbjct: 178 MSIRKVILKDQYHDI-KVIVPGKTLGEISKILNGDNESEVLIFFTSNHIMFEFDDTVVVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ D ++ VN +++R SI+ + + ++++ + + + Sbjct: 237 RLIEGEYFRINQMLSSDYDTKVTVNRREFMDSIERASILIRENDKKPIIINITDEGMELK 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G +N+ + I FN K+L++ + I D+EV + + S F Sbjct: 297 LNSA-FGTMNAEINITKFGKDLMIGFNPKFLVDALRIID-----DEEVTLYMMNPKSPCF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + N Y+++P+ Sbjct: 351 I----------KDEEENYIYLILPV 365 >gi|297748204|gb|ADI50750.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-EC] gi|297749084|gb|ADI51762.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-LC] Length = 428 Score = 292 bits (747), Expect = 8e-77, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 63 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 122 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 123 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 179 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 180 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 237 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 238 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 296 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 297 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 356 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 357 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 411 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 412 -----------DSTRSLFVIMPMRL 425 >gi|304570547|ref|YP_265835.2| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 370 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 209/387 (54%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V + D+ + L + +IE+++T+P+ +VLL A++ L I A+ ++ I Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ T ++ ++YDI+RK G +I+ + +++ + S F L SEFP Sbjct: 61 EVIEEGNTTTTSSIMYDIIRKFSSGKKINLSLTD--VSKLQVESEKSVFNLNCISASEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATD 177 T E F + S L L+ + F+++ +E R+YL+GIFFH E+ L A ATD Sbjct: 119 LTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HR++++++ + Q+ P II+P+K + ++ +L S D VK+S +S+I + + + Sbjct: 179 SHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSIL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG+FPNY VIP +N K+L ++ +VDRV+ +S + VK +LS D L + Sbjct: 238 ISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+N + G ES+ V ++ ++I FN +YL+++ + D+ + + + S Sbjct: 298 SVNNTNSGDGKESLTVKFD-HDLEISFNSRYLIDVASQLDGDK-----IEIFFNDTGSPA 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ ++ +V+MPM+ Sbjct: 352 LIKDP---------GDFDSIFVVMPMK 369 >gi|254496739|ref|ZP_05109598.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12] gi|254354034|gb|EET12710.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12] Length = 367 Score = 291 bits (746), Expect = 9e-77, Method: Composition-based stats. Identities = 108/386 (27%), Positives = 196/386 (50%), Gaps = 23/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + T+++ D+L L +++K ++ + + L + D LL I A+ EIEI+ + Sbjct: 3 EFTIKKEDLLTPLLTVAGAVDKKQSLAILSNFLFKIADNLLFITATDLEIEISAQVACES 62 Query: 62 -DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ITV A DI+R L D A + +N + I G S+F L + P +P Sbjct: 63 RNTTGAITVPAKKFIDIIRSLDDQASPNLVFDN---GILTIKQGRSSFKLTTLPAEGYPL 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+F + AVATDGHR Sbjct: 120 SEDECNDVELSIPRLVLLQLLQATHFAMSQQDVRVFLNGLFLDFEPN--IISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A++ +++P+K V E+LR+L+ D +V ++ +S L Sbjct: 178 MAISRYQC--SHISDKKLLLPKKGVQELLRLLNCIDDENVSLAAGKSHFKLVSSQFVFLS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP + DK++ ++C+ L++A+ R+ I++ + +AV L L L + Sbjct: 236 KLIEARFPPYAKAIPRNQDKQIIIDCSVLKRALSRIVILAHEKSKAVMLHLQPGLLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A+ES+ + I N YLL+++ + D ++ L ++SS+ I Sbjct: 296 NNNEQEEAVESLVAETQGDELKIGLNATYLLDVLSHFG-----DGQIRLSLSQTDSSILI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D N Y++MPM+I Sbjct: 351 ESLEND---------NYQYIIMPMKI 367 >gi|82701137|ref|YP_410703.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC 25196] gi|81251042|gb|ABB69853.1| DNA polymerase III beta chain [Nitrosospira multiformis] gi|82409202|gb|ABB73311.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC 25196] Length = 369 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 118/389 (30%), Positives = 206/389 (52%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A+ EI+IT + Sbjct: 1 MKLIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTD 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 V S+TV+A L DI+R L + +++ + + + G S F LQ+ P + Sbjct: 61 GGKVREEYSVTVAAKKLQDILRALPEKMRVTLETND---SRLQAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + ++ LK+L+ +AMA ++IRYYLN + E+ +L VAT Sbjct: 118 FPKFPESNETQGTVKVQQKELKHLLAMVQYAMAHQDIRYYLN--GLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + + +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALMMLETSL-ERKEVILPRKVVLELSRLLNETEDPVTIEVLQNQVRFTFSNVV 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTADNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + +A E + + YN +DI FN YLL++++N S + V +NSS Sbjct: 295 IVCNNSEQEEAQEELELQYNGDGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|213690931|ref|YP_002321517.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213522392|gb|ACJ51139.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320456977|dbj|BAJ67598.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 374 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 170/387 (43%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + + P+ V L+A +G L+ A EI I A Sbjct: 1 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIEGTLQFSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L+ G+ + I+ G S F LQ P++E+P Sbjct: 61 VDEAGSVLVQGKLLADITKSLRSEKTYLVTD----GSTLTITSGKSKFTLQLMPDTEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A++ EE R L G+ + K+ +TD R Sbjct: 117 LPVVPAMLGQV-DAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237 LA A Q + + + R ++ + + + ++++ + + Sbjct: 174 LARATFTWTPQNPDVDTTTLVRGSLLKDVARALDEHQNIRLDFDADSPTLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + + VN +L A+ RV++++ R ++++ + ++ + Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMTFTGQEVAL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D +A E++++ + + + FN YL E + V + V ++ + V Sbjct: 293 SAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGLSA-----VTEPFVRIKMTTPVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|256823907|ref|YP_003147867.1| DNA polymerase III subunit beta [Kytococcus sedentarius DSM 20547] gi|256687300|gb|ACV05102.1| DNA polymerase III, beta subunit [Kytococcus sedentarius DSM 20547] Length = 378 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 81/391 (20%), Positives = 164/391 (41%), Gaps = 24/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 M+ V+R + E + R + + +PV V L A+ G L + A E+ + A Sbjct: 1 MEFQVQRDVLSEAVAWVVRGLTNRPPVPVLAGVRLVADPAGTLTLSAFDYEVSGEVTVEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G V LL +I R L D + + G ++ ++ G S F L P +++P Sbjct: 61 DVVTGGEALVLGRLLSEISRSLPDKP----VRIQQDGGKLQVTCGSSRFALLEMPLADYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S S + ++ V + A + L G+ + E ++ +ATD + Sbjct: 117 SLPTSPEA-SGTVDGALFTKAVAQVSVAADRSDALPILTGVHVEFDGE--RITMLATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSE-----SRIHLNIE 233 R+A E+ + + +VP + + + + L + SV ++L + I Sbjct: 174 RMARRELTWTPRDPSAHHVALVPSRTLSDTAKSLGAV-GSVDIALGDEAGGKGLIGFAAG 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RL+DGE+P ++ P ++D + + + L +A+ RVS+++ R V+L + Sbjct: 233 QRHSTTRLLDGEYPKVSSIFPTTSDVDAVMETSALVEAIKRVSLVA-ERTTPVRLRFTPG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + D +A E++ + +D+ FN +LL+ + + + Sbjct: 292 SVAIEAGTGDDAQASEAVECTLDGDEIDVAFNPGFLLDGLGALGT-----PFARMSFTQP 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G+ ++ + + YV+MP+R Sbjct: 347 GKPALLTGQ---AEADGEADDAFSYVIMPVR 374 >gi|300777078|ref|ZP_07086936.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium gleum ATCC 35910] gi|300502588|gb|EFK33728.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium gleum ATCC 35910] Length = 376 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + L +I + P+ + L + + + I AS E + ++ Sbjct: 1 MKFIISSGELQKALQTVSGVISSSQSRPILENYLFELDGNNVTITASDGETTLVTSLEVK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118 D G V A + D ++ + K+N GT ++ I NF + ++ Sbjct: 61 SDDTGKFAVPAKIFQDFIKTYGEQPLTFVVKDNAEGTGSQLEILDEKDNFAVALDNADDY 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + S + + VL + T FA + + +R + G+ F E + V+TD Sbjct: 121 PELPEFDASQSVTMPAGVLSEALTNTLFATSNDSLRPVMTGVLFQFGENETNF--VSTDS 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL V + A+ I+P+K + IL+S + V + +E+ Sbjct: 179 HRLVVYKR-ADLMNAEPMEFIMPKKPLNIFKNILASSNEDVTIDFNENMAKFTFGKHIWI 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY VIP N L +N L A+ R SIMS+ V+ LS + L + Sbjct: 238 CRLIDGKYPNYTAVIPKENPNVLTINRNLLLGAIKRASIMSNKSTNQVRFKLSGNILHLH 297 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ + KA + YN ++I F+ K+L E++ + S D++ ++ N Sbjct: 298 AEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLTILGS-----DDITMKMSQPNRPG 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I D + N + MP+ Sbjct: 353 IIEPVD-----GLEENENILMLSMPV 373 >gi|304437931|ref|ZP_07397877.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] gi|304369071|gb|EFM22750.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral taxon 149 str. 67H29BP] Length = 380 Score = 291 bits (746), Expect = 1e-76, Method: Composition-based stats. Identities = 102/397 (25%), Positives = 191/397 (48%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +SD++ L + + K P+ V + A +G LE++ + E+ IPA Sbjct: 1 MNITLPKSDLIAALQIVSKGLSTKPQTPILSGVYMNAREGQLELQTTNYELGFIVTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + L + RKL ++S E+ G I G F L++ ++FP Sbjct: 61 IHGTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGL-AEIRSGTVRFTLRTMEVTDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVATD 177 + + F + VL LV+++ FA EE R G + ++ AT+ Sbjct: 119 LQRMDGTLQFTIKDRVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVEGREVTF--AATN 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 HRLAV + + ++ +I+P + + E+ R ++S S V VS S ++I ++ +++ Sbjct: 177 VHRLAVKSEQLEEEAGQIR-VIIPARFLEEVTRTMNSDVPSDVHVSCSYNQISVSFDNIY 235 Query: 237 MSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293 M+ RLI+G FP+Y+ VIP + ++ ++ AVDR S+++ + + VKL + Sbjct: 236 MTSRLIEGAFPDYRRVIPQDANIRTKVTLDVAAFSAAVDRASLIARTDQYNIVKLRFADG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +C++ ++P++G+A E++ + I FN YL++ + ++ SD + L S Sbjct: 296 MMCISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCI-----LSLQGS 350 Query: 354 N------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N S + IR ++ N YV+ P+R Sbjct: 351 NEQGVNLSPITIR---------EEADPNYIYVVTPVR 378 >gi|295398134|ref|ZP_06808183.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans ATCC 11563] gi|294973653|gb|EFG49431.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans ATCC 11563] Length = 383 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 180/396 (45%), Gaps = 29/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK ++ RS ++ L R I + TIPV V + + L + S I I I A Sbjct: 1 MKFSINRSVFIQNLTDVQRAISSRTTIPVLTGVKISVKEEGLYLTGSDATISIEAFIDAK 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I + + L +IV+KL EN + I+ ++F L Sbjct: 61 DDDNKLKIEATGDIVLPSRFLGEIVKKLPSDMMNLEVVEN---FQTEITSDRASFTLNGI 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 SE+P E + ++ L + K +V +T +++ +EIR GI F I +LK A Sbjct: 118 NGSEYPRLPEIDAKQTYALPTDTFKQVVNQTIISVSNQEIRPIFTGIHFEIGNGELK--A 175 Query: 174 VATDGHRLAVAEVDIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATD HRL+ + + + I +P +++ E++RI+ S + +++ ++++++ Sbjct: 176 VATDSHRLSQRIMPLTMPEVAGDTVLDINIPGRSLQELIRIVDSNE-DIEMMVTDNQVLF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289 ++ + RL++G +PN ++P + + V + L AV+R I+S + V+L+ Sbjct: 235 KARNIYLYSRLLEGNYPNTDRLLPNDHSTIIEVAASELVNAVERALILSHEGKNNVVRLN 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 +S + ++ + ++G E +NV ++I FN YL E + + V Sbjct: 295 ISDQDIILSSQSAEVGNVEEEINVVKAEGEALEISFNPDYLREALKSFGQQ-----NVQI 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 SS+ + D+ + N ++ P+R Sbjct: 350 GFQSSSHPFTLLPSDQ------TDNFNFVQLITPIR 379 >gi|67772421|gb|AAY79411.1| DNA polymerase beta subunit [Ehrlichia chaffeensis] Length = 375 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 123/386 (31%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 V + +L+ L + I+E++++I V V ++A D +++ ++ +I I +I A V Sbjct: 8 NFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHV 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 +V G + VSA LLYDIV+KL + +I FF + + I G + F+L +FP Sbjct: 68 NVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPII 125 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHRL Sbjct: 126 ENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRL 183 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSV 239 ++ ++ + IIVP+K V EIL+I+S S + + +SLS+ +I + + Sbjct: 184 SLTKLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILIS 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG FP+Y ++IP S+DK + + L A+DRVS++ +++ +KL S+KL ++ Sbjct: 244 KVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSA 303 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D G A E + V Y+ M I N +YL+E + I + + + +SV I Sbjct: 304 ASSDQGDAREELEVDYSGEDMTIGLNARYLMEALYCIKG------KCLLSFYDAGTSVLI 357 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ N + Y++MPMRI Sbjct: 358 QEEE--------NIDDFTYIIMPMRI 375 >gi|238926598|ref|ZP_04658358.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531] gi|238885544|gb|EEQ49182.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531] Length = 380 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 99/397 (24%), Positives = 194/397 (48%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +++++ L + + K P+ V + A +G LE++++ E+ IPA Sbjct: 1 MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + L + RKL ++S E+ G I G + F L++ ++FP Sbjct: 61 IRSTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGL-AEICSGTARFTLRTMEVTDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVATD 177 + F + +VL LV+++ FA EE R G + + K+ AT+ Sbjct: 119 LHRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEV--DGHKVTFAATN 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 HRLAV + + ++ II+P + + E+ R ++S S V +S + ++I ++ +++ Sbjct: 177 VHRLAVKSESLETEAGQIC-IIIPARFLEEVTRTMTSDVPSDVNISCTYNQISISFDNIY 235 Query: 237 MSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293 M+ RLI+G FP+Y+ VIP + ++ ++ AV+R S+++ + + VKLS + Sbjct: 236 MTSRLIEGTFPDYRRVIPQDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFADG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ ++P++G+A E++ + I FN YL++ + ++ SD + L S Sbjct: 296 TMRISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCI-----LSLQGS 350 Query: 354 N------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N S + IR ++ N YV+ P+R Sbjct: 351 NEQGVNLSPITIR---------EEADPNYIYVVTPVR 378 >gi|169823699|ref|YP_001691310.1| DNA polymerase III subunit beta [Finegoldia magna ATCC 29328] gi|302380135|ref|ZP_07268608.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|303234446|ref|ZP_07321084.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4] gi|167830504|dbj|BAG07420.1| DNA polymerase III beta subunit [Finegoldia magna ATCC 29328] gi|302312077|gb|EFK94085.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3] gi|302494401|gb|EFL54169.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4] Length = 367 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 185/386 (47%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + ++L+ + A + + + TI + +L A + L + A+ E+ + Sbjct: 1 MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I +++ ++ +I+RKL D +N +NI + F +Q +EFPS Sbjct: 61 IYEKGQIVINSSMIGNIIRKLPDADIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L S L++ + +T FA + ++ R L G+ F+I + ++ VA DG+R Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMND--RIEFVALDGYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +++ + V++ IVP +A+ E+ +IL ++ + +++ I +E+ + R Sbjct: 175 VSLDCLSNVSEFE--MKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYSR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LIDG++ +Y V+ + + L+ A++R S+M+ + VKL S ++L ++ Sbjct: 231 LIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS 290 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D+GK E + + I FN KYLL+ + I DD++ + S + Sbjct: 291 -NTDIGKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVID-----DDDITLNMSGSLRPMVF 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + N N Y+++P+++ Sbjct: 345 KP---------LNDTNYTYLVLPVKL 361 >gi|91762458|ref|ZP_01264423.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] gi|91718260|gb|EAS84910.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002] Length = 370 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 115/387 (29%), Positives = 209/387 (54%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V + D+ + L + +IE+++T+P+ +VLL A++ L I A+ ++ I Sbjct: 1 MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ T ++ ++YDI+RK G +I+ + +++ + S F L SEFP Sbjct: 61 EVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTD--VSKLQVESEKSVFNLNCISASEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATD 177 T E F + S L L+ + F+++ +E R+YL+GIFFH E+ L A ATD Sbjct: 119 LTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HR++++++ + Q+ P II+P+K + ++ +L S D VK+S +S+I + + + Sbjct: 179 SHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSIL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG+FPNY VIP +N K+L ++ +VDRV+ +S + VK +LS D L + Sbjct: 238 ISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V+N + G ES+ V ++ ++I FN +YL+++ + D+ + + + S Sbjct: 298 SVNNTNSGDGKESLTVKFD-HDLEISFNSRYLIDVAAQLDGDK-----IEIFFNDTGSPA 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ ++ +V+MPM+ Sbjct: 352 LIKDP---------GDFDSIFVVMPMK 369 >gi|295394845|ref|ZP_06805058.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium mcbrellneri ATCC 49030] gi|294972178|gb|EFG48040.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium mcbrellneri ATCC 49030] Length = 383 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 164/388 (42%), Gaps = 25/388 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPAS 60 K VER + + A + + ++ IPV VL+ A+ +G + E+ + A Sbjct: 12 KFKVERDVFADAVTWAAKNLPQRPVIPVLTGVLVTADSNGTVRFAFYDLEVSQRITVEAD 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ VS LL DI R L + +V+IS G S F L + P E+P Sbjct: 72 VETPGTFLVSGRLLADIARALPPQQVVLEL----NNGKVDISCGSSRFSLMTMPVEEYPD 127 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++S ++ V + A + ++ L + I + K+ +ATD +R Sbjct: 128 LPTIPDTTGVV-SASTFQHAVSQVAVAASRDDTLPVLTSVRIEIEGD--KVTLLATDRYR 184 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIESL 235 LAV + + + ++ K + E+ + +S +++S++ES + + Sbjct: 185 LAVRQFTWNPRTPDFSANALLRAKTLSEVAKSMS---GDLEISIAESNGKEMLSFTSDGR 241 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++ LI+G++P +++ P + + LR+AV RVS+++ R +K + L Sbjct: 242 VVTSLLIEGDYPKVRSLFPKESTITAVLQVGALREAVRRVSLVA-ERNTPIKFEFTDGSL 300 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D +A E++ + FN Y+ E ++ I + V F L Sbjct: 301 VLRAGAGDDAQASEALPATIEGGDILTGFNPHYISEGLNAIDT-----PYVRFSLTDPKK 355 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V I G + + + Y+LMP+ Sbjct: 356 PVVISGMQEP---DGEVDSAYRYLLMPI 380 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 29/184 (15%), Positives = 73/184 (39%), Gaps = 17/184 (9%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + F++ V + V + + L G+ + A + L V+ Sbjct: 8 DSTVKFKVERDVFADAVTWAAKNLPQRPVIPVLTGVLVTADSNGTVRFAF----YDLEVS 63 Query: 185 E-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLI 242 + + + A + + +V + + +I R L V + L+ ++ ++ S S + + Sbjct: 64 QRITVEADVETPGTFLVSGRLLADIARALPP--QQVVLELNNGKVDISCGSSRFSLMTMP 121 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCM 297 E+P+ +P D V+ + + AV +V++ +S +V++ + DK+ + Sbjct: 122 VEEYPD----LPTIPDTTGVVSASTFQHAVSQVAVAASRDDTLPVLTSVRIEIEGDKVTL 177 Query: 298 TVDN 301 + Sbjct: 178 LATD 181 >gi|209523424|ref|ZP_03271979.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328] gi|209496166|gb|EDZ96466.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328] Length = 393 Score = 291 bits (745), Expect = 1e-76, Method: Composition-based stats. Identities = 96/409 (23%), Positives = 197/409 (48%), Gaps = 42/409 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M++ VE+ + L R I + + P+ ++L++A+ L + A + I + P Sbjct: 1 MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINTSFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V G +T+ A LL DIV +L G + E V ++ + ++ E+ Sbjct: 61 AQVQQGGVLTLPAKLLNDIVSRLPGGDI--QVDDEETEAVVTLTSSSGRYQVRGMVAEEY 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E +S +LA+ L ++ T FA + +E + L G+ + ++ LC +TDG Sbjct: 119 PDLPSVEGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFASTDG 176 Query: 179 HRLAVAEV----DIVAQIAKMPSIIVPRKAVGEILRILSSKDS---------------SV 219 HRLAV +V D +Q + I +P +A+ E+ R++ S +S V Sbjct: 177 HRLAVVKVENVRDPNSQEPENLEITIPARALREVERMIVSANSARHSAATEEESTTPPMV 236 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + ++++ + + ++ R ++G +P Y+ +IP ++ V L A++R+ +++ Sbjct: 237 TLGFDDTQVVFELGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLAALERIGVLA 296 Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNI 336 S + VK + + ++ ++V+ D+G A+ESM + P ++ FN KYL++ + + Sbjct: 297 SQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLKVL 356 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S E+ +L+++++ V I N + Y++MP+++ Sbjct: 357 NSS-----EIQIQLNAASTPVII---------NPFGGLKMTYLVMPIQL 391 >gi|330752164|emb|CBL87124.1| DNA polymerase III, beta chain [uncultured Flavobacteria bacterium] Length = 373 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L L +I+ NT+P+ H L+ G L I AS E +T A+ Sbjct: 1 MKFIVSSSKLLRSLQTVSGVIQSNNTLPILDHFLVHLTPGKLTITASDIETTMTTALAVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + A +L D V+ + F N + +S + L SE+P Sbjct: 61 SSEEITAAIPAKILLDTVKSFPEQP--LTFTLNSSTHSLEVSSDFGKYALAYVDPSEYPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S ++ L + +T FA +++R ++G+FF E L VATD H+ Sbjct: 119 SASLNEADSINISEKTLGTAINKTLFAAGNDDLRPVMSGVFFQFTNEGLTF--VATDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L +I+P+K + + L S ++V +S ++ +++ R Sbjct: 177 LVRYSRK-DILAPSTAELILPKKPLTLLKTTLGSGGNNVSISYTDQNAQFTYGEVTLLCR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PN+Q VIP N L + L +V R+SI S+ VKL ++ ++L ++ + Sbjct: 236 LIDGKYPNFQAVIPKDNPNHLVADRMALLSSVKRISIFSNKTTHQVKLKVAGNELNISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D KA E + Y M+I FN ++L+E++ N+ S DE++ + + N + + Sbjct: 296 DLDFSNKANERLTCNYQGTDMEIGFNSRFLIEMLSNLES-----DEIILEMSAPNRAGIL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D ++MP+ + Sbjct: 351 LPD-----GGLDEGEELLMLVMPVML 371 >gi|68171925|ref|ZP_00545242.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] gi|67998647|gb|EAM85383.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] Length = 375 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 124/386 (32%), Positives = 209/386 (54%), Gaps = 20/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 V + +L+ L + I+E++++I V V ++A D +++ ++ +I I +I A V Sbjct: 8 NFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHV 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 +V G + VSA LLYDIV+KL + +I FF + + I G + F+L +FP Sbjct: 68 NVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPII 125 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHRL Sbjct: 126 ENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRL 183 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSV 239 ++ ++ I IIVP+K V EIL+I+S S + + +SLS+ +I + + Sbjct: 184 SLTKLSQSQNILSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILIS 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++IDG FP+Y ++IP S+DK + + L A+DRVS++ +++ +KL S+KL ++ Sbjct: 244 KVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSA 303 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D G A E + V Y+ M I N +YL+E + I + + + +SV I Sbjct: 304 ASSDQGDAREELEVDYSGEDMTIGLNARYLMEALYCIKG------KCLLSFYDAGTSVLI 357 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ N + Y++MPMRI Sbjct: 358 QEEE--------NIDDFTYIIMPMRI 375 >gi|148658484|ref|YP_001278689.1| DNA polymerase III subunit beta [Roseiflexus sp. RS-1] gi|148570594|gb|ABQ92739.1| DNA polymerase III, beta subunit [Roseiflexus sp. RS-1] Length = 377 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 170/392 (43%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ + ++ L + K+T+PV ++LL ++DG L++ A+ EI IT I A Sbjct: 1 MKLSCLQENLKRGLAIVSHAVAGKSTLPVLSNILLASDDGRLKLAATNLEIGITCWIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G++TV A LL D+V L + I + T +N+ ++ EFP+ Sbjct: 61 IEDEGAVTVPAKLLSDVVGSLPNDR-IDLTLDVRTQT-LNLKCARFETNIKGTEAGEFPT 118 Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++L+ +E+ FA ATEE R L G+ + D + A DG Sbjct: 119 IPTIDDRTPAAIFPPALLRETIEQVAFAAATEETRPVLQGVQLRLR--DNRAIFAAADGF 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV--KVSLSESRIHLNIESLSM 237 RLA +++ I + +I+P +A+ E+ RI+ +S V ++ ++ + ++ + Sbjct: 177 RLAQRIIELPEPIVQQQELIIPARALTELARIVDDDESPVEMMITPGGGQVLFHTSTVDL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------ 291 RLI+G FP+ VIP ++ L +AV S + V+L + Sbjct: 237 VSRLIEGRFPDVDRVIPQQYQTRAVLDRQELTKAVKLASFFAVASSNIVRLHMEPGGEMG 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ ++ + ++G ++ I N K+L + I I + ++ Sbjct: 297 PGRITISANAVEVGDNKGQIDATIQGDGGQIALNVKFLSDAIAAIPT-----PQIALETQ 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S + D +++MPM Sbjct: 352 SPQHPAVFKPVGAD---------GYIHIVMPM 374 >gi|227543720|ref|ZP_03973769.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300908785|ref|ZP_07126248.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri SD2112] gi|227186288|gb|EEI66359.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A] gi|300894192|gb|EFK87550.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri SD2112] Length = 380 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 175/396 (44%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T+ RS + L + R I K TIP+ + + N + + S +I I I A+ Sbjct: 1 MNFTINRSAFISQLNNILRAISSKTTIPILTGLKMVVNKDNIVLTGSNSDITIESVINAN 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G+I + A DIV+KL D E G + +I+ G + F + Sbjct: 61 DAENDLTIEATGAIVLPARFFSDIVKKLPDKKV---TIEVTSGFQADITSGSAKFQINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP E E S L + +LK ++ +T A++ +E R L G+ + D L A Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGVHMTLK--DGVLTA 175 Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA +V + + +I+P K++ E+ ++S V++ ++E+++ Sbjct: 176 VATDSHRLAQRKVVLENIDNSIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIF 235 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + RL++G +P +IP + D + + +++R S++S R VKLSL Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLK 295 Query: 292 SDK--LCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ D+PD+G E + + ++I FN Y+ + + + + Sbjct: 296 PSESLVRISGDSPDIGTVEEKVVTSALDGNDLEISFNPNYMKDALRSFGQAT-----IKI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + N +++ P+R Sbjct: 351 SFTSPLRPFTLVPTED--------QENFVHLITPVR 378 >gi|302384446|ref|YP_003820268.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1] gi|302195074|gb|ADL02645.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1] Length = 373 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T ++ +IL + + + K T+ + + + A+ +++ A+ E+ I + + Sbjct: 1 MKLTFKQDEILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A LL +IVRKL E++ IS +S F++Q EF Sbjct: 61 ILERGKIALEAKLLSEIVRKLSSAGDSLVTIESDEKFTTTISCENSVFHIQGRDGEEFAY 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L+ LK ++ +T F++A + + G F + LK+ V+ DGHR Sbjct: 121 LPYIERDHYICLSQFSLKEVIRQTIFSIAPNDSNKMMTGELFQVTGNQLKV--VSLDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ + +IVP K + E+ +IL + V + S + I + + Sbjct: 179 ISIRNIELKDTYHDI-KVIVPGKTLNEVSKILGGDSEKEVLIFFSTNHILFEFDDTIVVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + + VN L +DR +I+ + + +++ ++ + Sbjct: 238 RLIEGEYFRIDQMLSSDYETKTSVNKRQLLDCLDRATILVRENDKKPLIMNIEDQEMELK 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + ++ + I FN K+L++ + I D+EV + + S F Sbjct: 298 MNSS-FGSMNAQVPIHKTGSDIMIGFNPKFLIDALRIID-----DEEVTLYMLNPKSPCF 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D + Y+++P+ Sbjct: 352 IR----------DEEGKYIYLILPV 366 >gi|239834278|ref|ZP_04682606.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] gi|239822341|gb|EEQ93910.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG 3301] Length = 351 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 192/385 (49%), Gaps = 36/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++++RS + L R IE +N+IP+ +VLL DG L + + ++EIT ++P Sbjct: 2 MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV +L DI +++ G G + ++ G S + L P +FPS Sbjct: 62 DCHSGSATVPGKMLADIAKRV-TGDITLELDAASSGGRLTVASGRSRYKLDVLPAEDFPS 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + EL L LV A++T++ R +L+G+FFH +E +L AVATDGHR Sbjct: 121 FSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEG--RLVAVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L D + +I+P K V + + +K+SLS++++ + ++ + Sbjct: 176 LVRNYGD---EGDTEYGVILPSKLVAMLPK------GVIKLSLSQTKVRIEAGGTVITSK 226 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G FP++ +IP N L V+ L A+ RVS +++ +AVKL ++ D LC+++ Sbjct: 227 LIEGTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEVA-DVLCLSIA 285 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + KA + + + P+ I FN KYL +++ + + +V F S + Sbjct: 286 D----KAQDEIEGELDGEPLTIGFNPKYLQDMLGAVD-----EKDVCFAFSDGMSPAVLT 336 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 G+ N V+MP+R+ Sbjct: 337 GQG-----------NWTGVVMPLRV 350 >gi|94264232|ref|ZP_01288027.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|94266206|ref|ZP_01289915.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93453213|gb|EAT03671.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] gi|93455343|gb|EAT05547.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1] Length = 376 Score = 290 bits (744), Expect = 2e-76, Method: Composition-based stats. Identities = 101/390 (25%), Positives = 190/390 (48%), Gaps = 25/390 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V R + L L I +K T+ V ++LL+A + L + + E+ + +PA V Sbjct: 5 FNVPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVPAEVT 64 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G IT+ A L+++VR+ Q ++N T V I+ G+S+ L EFP+ Sbjct: 65 SPGEITLPARKLFELVREAQADQIEIAEQDN---TRVKINAGNSDCRLAGMAADEFPAFP 121 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFF--HINEEDLKLCAVATDGH 179 + + + V++ L+++T +A+A E E + L G+ I E+ L V++DGH Sbjct: 122 PHQDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDGH 181 Query: 180 RLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RLA+ E + A + + I+VPRK + E+ ++ S + +++ E ++ + + Sbjct: 182 RLAMMESKVEADLGPLAMDRVILVPRKGMQEVRKLCESG-GQIALAIEEKQLVVKAGEYT 240 Query: 237 MSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 M RL+ G+FP+Y+++I + + +N +L ++ RV+I + R AV + + ++ Sbjct: 241 MVARLMSGDFPDYKSIIQVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENSRM 300 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ N D G A E + + Y M + FN KY E + + S + V +++ +S Sbjct: 301 TLSSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEALQVMDS-----EMVKAYINAEDS 355 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++G D V+MPM+I Sbjct: 356 PCLLQG---------DKDPGYLSVIMPMKI 376 >gi|266620979|ref|ZP_06113914.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479] gi|288867360|gb|EFC99658.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479] Length = 373 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 173/385 (44%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T ++ IL + + + K T+ + + + A+ +++ A+ E+ I + + Sbjct: 1 MKLTFQQDAILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A LL +IVRKL E++ IS S F++Q EF Sbjct: 61 IHERGKIALDAKLLSEIVRKLSSAGDSVVTIESDEKFTTTISCEKSVFHIQGRDGEEFAY 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++ +T F++A + + G F ++ LK+ V+ DGHR Sbjct: 121 LPYIERDNYICLSQFTLKEVIRQTIFSIAPNDSNKMMTGELFQVSGSQLKV--VSLDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ V++ + +IVP K + E+ +IL + V + S + I + + Sbjct: 179 ISIRNVELKDTYHDI-KVIVPGKTLSEVSKILGGDNEKEVLIFFSSNHILFEFDDTIVVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++ VN L +++R +I+ + + +++ +L + Sbjct: 238 RLIEGEYFRIDQMLSSDYETKITVNKRELLDSIERATILIRENDKKPLIINVVDQELQLK 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + + + I FN K+L++ + I D+EV + + S F Sbjct: 298 MNSS-FGSMNAEVAAHKTGSDIMIGFNPKFLIDALRIID-----DEEVTLYMLNPKSPCF 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D + Y+++P+ Sbjct: 352 IR----------DEEGKYIYLILPV 366 >gi|116491820|ref|YP_803555.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC 25745] gi|116101970|gb|ABJ67113.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC 25745] Length = 379 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 93/395 (23%), Positives = 180/395 (45%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+ R+ ++ L R I K TIP+ + ++A + L + S +I I I Sbjct: 1 MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIEAEEDRLILTGSNTDISIETTISTN 60 Query: 59 -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ G++ ++A DIV+KL D + K+ G + I+ G S F + Sbjct: 61 DEEAHLNIESTGAVVLTARFFGDIVKKLPDNTMLLEVKD---GFQTTITSGASEFKINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + FP E + + L + V ++ T A++ +E R L GI F I KL A Sbjct: 118 DANNFPHLPEVDSQTTITLKADVFSEMINETVIAVSNQESRPILTGIHFTIEGN--KLSA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +++ I II+P K++ E+ R+L + ++ + +SE++ + Sbjct: 176 VATDSHRLSQRVINLPEPIKMPEDIIIPGKSLLELSRMLDDEIDTITLQISENQALFTFD 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS- 291 RL++G +P+ +IP + E+ L +++R S++S + R VKL+++ Sbjct: 236 ETLFYSRLLEGLYPDTSRLIPKESSTEMEFEAPELLASIERASLLSHAGRNNVVKLTINA 295 Query: 292 -SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++ D+P++G E + ++I FN YL + + + + Sbjct: 296 ANKQAIISGDSPEVGNVEEEVVTKDIVGEDLEISFNPDYLKDALRSFGHTS-----IKMA 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + + N ++ P+R Sbjct: 351 FTSALRPFTLVPTED--------QENFIQLITPVR 377 >gi|260437690|ref|ZP_05791506.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876] gi|292809916|gb|EFF69121.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876] Length = 365 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 170/385 (44%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S++L+ + R + + T+ + +L+ A + +++ A+ E+ I I Sbjct: 1 MKIVCTKSELLKGVNITLRAVPVRTTMTILECILIDATELDIKLTANDMELGIETTIEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A DI+RKL D E + +I+ S F + + +F Sbjct: 61 IIEKGKIAIEAKFFADIIRKLPDSEI---TIETDSNFNASITCEKSVFNIPARDGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK L+ +T F++ E + G F + E++LK+ V+ D +R Sbjct: 118 LPYIEKNNMITISQFDLKELIRQTIFSIGDNESNLIMTGELFEVTEDNLKV--VSLDRYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ V + I +IVP K + EI +I++ +S V V S++ I + + Sbjct: 176 VSIRNVKL-NNIYNDIKVIVPGKTLNEISKIITGDAESMVDVYFSDNHILFEFDKTIVIS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMT 298 RLI+GEF ++ + ++ +N L +DR ++ + V + + + Sbjct: 235 RLIEGEFFKINQMLSKDYETKITINKRELLDCIDRATLFVKEGNKKPVIFDIEDGSVKIN 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +GK E +++ + I FN K++++ + I D+ + ++ S Sbjct: 295 ITST-VGKMNEEIDIEKEGSDIKIGFNPKFVIDALRVID-----DETISMTFMNAKSPCT 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR KD Y+++P+ Sbjct: 349 IRDKDN----------RYIYLILPV 363 >gi|148358141|ref|YP_001249348.1| DNA polymerase III subunit beta [Legionella pneumophila str. Corby] gi|296105499|ref|YP_003617199.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99 Alcoy] gi|148279914|gb|ABQ54002.1| DNA polymerase III beta chain [Legionella pneumophila str. Corby] gi|295647400|gb|ADG23247.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99 Alcoy] Length = 367 Score = 290 bits (743), Expect = 2e-76, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 197/386 (51%), Gaps = 23/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 62 D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A DI+R L + S + L V I S F L + P +PS Sbjct: 63 NNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A++ +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSC--NNITQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP DK + ++C L++A+ R+ I++ + +AV L L +L + Sbjct: 236 KLIEARFPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +AIE+++ + I N YLL+++ + S D ++ + ++ SS+ I Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLAHFS-----DGQIRLSMSNTESSILI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MPM+I Sbjct: 351 ESLVND---------NYQYIIMPMKI 367 >gi|281356711|ref|ZP_06243202.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC BAA-548] gi|281316838|gb|EFB00861.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC BAA-548] Length = 364 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 93/384 (24%), Positives = 177/384 (46%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV R + + L II ++ +PV +V++QA +G+L + + EI I+ + A Sbjct: 1 MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G T A L +V + + + + I G S+F L P ++FP+ Sbjct: 61 VEEAGVTTAPARKLASLVGCFVGTDVVFEVDDKD---HIKIKCGTSHFTLLGLPAADFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E ++ S K ++ +A++ ++ R L G+ E + L VATDG R Sbjct: 118 AVEFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTL--VATDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E A I+P KA E R+L D+ + + L + + ++ + Sbjct: 176 LAMQEKTPEAIEGGDGDAIIPLKAASEARRLLE-GDAVMTIRLGDKQCTFVAGGFELTTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G +PNY+ V+P S + + V + ++ VS++ S + L +++L + Sbjct: 235 LIEGTYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQAS 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + ++G+ + + + + P ++ FN YL + + N +D+ + +++ + V I Sbjct: 295 SAEVGEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADADK-----IRMKINDPLNPVAIE 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 G + YV+MP+R Sbjct: 350 GSE-----------GFLYVIMPIR 362 >gi|300742655|ref|ZP_07072676.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567] gi|300381840|gb|EFJ78402.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567] Length = 375 Score = 290 bits (743), Expect = 3e-76, Method: Composition-based stats. Identities = 92/389 (23%), Positives = 180/389 (46%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L++A G + I + EI I AS Sbjct: 1 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAKSGEVSISSFDHEISAKQTIEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ V +L +I R L + A + F + + + ++ + F L P +++P Sbjct: 61 VEQEGTCLVPGKMLAEICRSLPN-ADVEFVAND---STIFMTCRSAKFQLAGMPVADYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V + A++ +E L GI I+ + L +ATD +R Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237 LA+ E+ + ++ ++++ K + E+ R LSS + ++L E+ I + S Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296 + L+DG++PN + + P V ++L +A R+S+++ R ++L + D ++ Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVA-ERNTPLRLQFTEDGQVS 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A ESM + + + +N YL E + + D V F + Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+D+ + ++ Y++ P+R+ Sbjct: 347 AVLSGQDEP---LSEEDLSYRYLVQPIRL 372 >gi|302336539|ref|YP_003801746.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084] gi|301320379|gb|ADK68866.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084] Length = 367 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 98/387 (25%), Positives = 182/387 (47%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V +S + + L + + +T+P+ +L+ A +G L + + I + I A Sbjct: 1 MKFSVSQSSLSQALAVVSKGMGSNSTLPILSGILITAAEGTLTFQTTDLTINVRHRIAAM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS VS +L +IV+ L D A E V+IS S F L + S+FP Sbjct: 61 VEEAGSTVVSGKILMNIVKTLPDAAVSFEGGE----RVVSISCDKSTFRLNTLDPSDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + EL SS+L +V++ + + + R L+G+ + E ++L VATD +R Sbjct: 117 FPQFALGRTIELPSSLLSEMVDKVYKVTSRDTSRPILSGVLLSVEENTIRL--VATDSYR 174 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + A IVP ++L L S V + ++S++ + + Sbjct: 175 LAVCDSNAETSSADEAFQTIVPGMTFHDVL-TLPSMTEKVLIGTTDSQVVFVFGNTTYIT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 R I+G FPNY+ ++P + ++VN + A+ RVS+++ + V + + ++ Sbjct: 234 RKIEGNFPNYKQLLPADCNTSVKVNVSEFASALKRVSVIALANPSVRVDIDTDGGVMKLS 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G++ E + V M I NY Y+ + ++ ++++ E+ L S+ Sbjct: 294 ASSPDQGESTELLPVDVEGQSMSIALNYHYVFDCVNAAANEK----EITLELLSAMQPGI 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+N Y+LMP+R+ Sbjct: 350 FKS---------YAKINYLYLLMPVRM 367 >gi|325066320|ref|ZP_08124993.1| DNA polymerase III subunit beta [Actinomyces oris K20] gi|326772842|ref|ZP_08232126.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505] gi|326637474|gb|EGE38376.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505] Length = 376 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 155/389 (39%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + E + R + + +PV V L+A L + + E+ + A Sbjct: 1 MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + VS LL DI + L + + G +V +S G + F L + ++P+ Sbjct: 61 VEEDGVVLVSGRLLADIAKALPNKPVDLEVE----GNKVAVSCGSARFSLAAMAADDYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V + + L V + A + ++ L + + L L +ATD +R Sbjct: 117 LPVMPAVAG-TIDAHDLARAVGQVSIAASRDDTLPLLTSVQIEVEGSSLVL--MATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDS----SVKVSLSESRIHLNIESL 235 LA+ E+ ++ + ++ + + ++ + L+S S + S I Sbjct: 174 LAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + L DG++P + + P S V L AV RVS+++ R + +S + L Sbjct: 234 RTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVA-DRSTPIHMSFTQGNL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D +A E + + + FN YLL+ + ++ V ++ Sbjct: 293 ELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALN-----QPYVRLDFTHASK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G D + Y+LMP+R Sbjct: 348 PAVLTGMDS---IGGTEDSSFRYLLMPIR 373 >gi|325298420|ref|YP_004258337.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] gi|324317973|gb|ADY35864.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] Length = 374 Score = 290 bits (742), Expect = 3e-76, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 184/372 (49%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V +++ L R+I KN++P+ LL+ +DG L + +S E ++ +I Sbjct: 1 MKFIVSSTNLFNHLQAISRVINSKNSLPILDCFLLELHDGTLSMTSSDNETTLSTSIEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ L + ++++ + F+ N E+ + + + + L +E+P Sbjct: 61 EFDGDGRFAVSSRTLLEALKEIPEQP--LAFQVNLDTLEITVQYQNGQYNLMGQNANEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++ + + +L + V R FA A +E+R +NGI+F I ED+ L VA+DG Sbjct: 119 QPQDLGANAVRLTMPAEILMSGVNRCIFATADDELRPVMNGIYFDITPEDITL--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V A + + I+P+K + +L + V++ + +E+ M Sbjct: 177 HKL-VRNKTYAAHGTEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + ++ +L A+ RVS+ SS +KL+LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAILDRASLISALRRVSVFSSQASSLIKLNLSDNQIKIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y+ PM I F +L++I++NI + V L + + Sbjct: 296 AQDIDFSTSAEETVICQYDGNPMSIGFKSSFLIDILNNIPAA-----NVTIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I ++++ + Sbjct: 351 VIVPEEQEENED 362 >gi|311112570|ref|YP_003983792.1| DNA-directed DNA polymerase III subunit beta [Rothia dentocariosa ATCC 17931] gi|310944064|gb|ADP40358.1| DNA-directed DNA polymerase III beta subunit [Rothia dentocariosa ATCC 17931] Length = 375 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 177/389 (45%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + E +G R + + T PV +L++A G + I + EI I AS Sbjct: 1 MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAESGEVSISSFDHEISAKQTIEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ V +L +I R L + + + + ++ + F L P +++P Sbjct: 61 VEQEGTCLVPGKMLAEICRSLPNADVEFVAND----STIFMTCRSAKFQLAGMPVADYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + S + + V + A++ +E L GI I+ + L +ATD +R Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237 LA+ E+ + ++ ++++ K + E+ R LSS + ++L E+ I + S Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296 + L+DG++PN + + P V ++L +A R+S+++ R ++L + D ++ Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVA-ERNTPLRLQFTEDGQVS 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A ESM + + + +N YL E + + D V F + Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+D+ + ++ Y++ P+R+ Sbjct: 347 AVLSGQDEP---LSEEDLSYRYLVQPIRL 372 >gi|81251065|gb|ABB69870.1| DNA polymerase III beta chain [Nitrosospira sp. PJA1] Length = 369 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 118/389 (30%), Positives = 201/389 (51%), Gaps = 24/389 (6%) Query: 1 MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58 MK+ +R +L+ L I+ER++T+P+ +VL++ + A EI+IT Sbjct: 1 MKLIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIAPDLEIQITTYTTD 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D S+TV+A L DI+R L + Q++ + + G S F LQ+ P + Sbjct: 61 GGKADEEYSVTVAAKKLQDILRALPEKVQVTLETSD---NRLQAKAGKSRFNLQTLPAED 117 Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E E + ++ LK+L+ +AMA ++IRYYL + E+ +L VAT Sbjct: 118 FPKFPESNEPQGTVKIQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA A + + + K +I+PRK V E+ R+L+ + V + + ++++ ++ Sbjct: 176 DGHRLAFALIMLETPLEKKE-VILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVV 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++DG+FP+Y VIP K+ +N L Q + R +I+S+ + + V+L L++D L Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLR 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +N + + E + + YN +DI FN YLL++++N S + V +NSS Sbjct: 295 IVCNNSEQEETQEELELQYNGEGLDIGFNITYLLDVLNNAES-----ETVTCAFGDANSS 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I DS YV+MPMRI Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369 >gi|291547606|emb|CBL20714.1| DNA polymerase III, beta subunit [Ruminococcus sp. SR1/5] Length = 371 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 179/387 (46%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S +L+ + A + + K T+P+ +L+ A ++ + E+ I + + Sbjct: 1 MKIICSKSSLLKSVSIALKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + A + Y+I+R+L D + T I+ + F + +F Sbjct: 61 IEEKGKVALDAKIFYEIIRRLPDNDVTIKTDDKYAAT---ITCEKAKFNIPGKSGEDFAY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ LK ++ +T F++A E + G F I LK+ V+ DGHR Sbjct: 118 LPMIEKDEPLTISQYTLKEMIRQTIFSIAVNENNKLMTGELFEIKNNCLKV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + ++VP K + E+ +ILS + D V + +++ I + + Sbjct: 176 ISIRKMSLKKDYSDR-KVVVPGKTLSEVSKILSGEVDDQVSIYFTKNHILFEFDQTMVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + +L++N +DR +++ + + ++++ D + + Sbjct: 235 RLIEGEYFRIDQMLSSDYETKLKINKKEFLDCIDRATLLVREVDKKPIIINITDDDMELR 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +D+ MG E +++ + I FN K+L++ + I D+ V L + + F Sbjct: 295 IDSA-MGSMNEEIDIEKEGKDIMIGFNPKFLIDALRVID-----DETVTIYLVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D++ N Y+++P+ I Sbjct: 349 IR----------DDEENYTYLILPVNI 365 >gi|163814986|ref|ZP_02206373.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759] gi|158449669|gb|EDP26664.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759] Length = 368 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 183/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ ++++L+ + + + K T P+ +L++A+ G++++ A+ EI I + + Sbjct: 1 MKISIRKANLLQGITTVSKAVSNKTTHPILSCILVEASGGIIKLTANDMEIGIESYVDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + A L D +RKL D E++ + I F L ++F + Sbjct: 61 VIEDGKVALEAKLFSDFIRKLPDSEI---SIESDKENKTLIKCERLEFNLPGKSGNDFSN 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ L++++ +T F+++ E + G F ++ +L V+ DGHR Sbjct: 118 LPVVSKDKYITISQFALRDVINQTIFSISDNENNKLMTGELFEVSNN--RLSVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +D+ + + ++VP K++ +I +I++ D V + +E+ I ++ + Sbjct: 176 ISIRYIDLKGDNSDI-KVVVPGKSLSDISKIMNGGVDDPVNIYFNENNILFEFDNTKVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ +++ ++++N ++DR +++ + ++LS+ L + Sbjct: 235 RLIEGEYFRISHMLSVDYQIKMKINKREFLDSLDRATLLIKESDKKPIRLSIGDRNLGLK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G + +++ + I FN K +++ + I D+ V +++ S Sbjct: 295 ISSL-IGSLNDEIDIEKEGNNLVIGFNPKLIIDALRVID-----DENVTIYFNNTKSPCV 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD+ + Y+++PM Sbjct: 349 I----------KDDAGSYIYLILPM 363 >gi|86609004|ref|YP_477766.1| DNA polymerase III subunit beta [Synechococcus sp. JA-2-3B'a(2-13)] gi|86557546|gb|ABD02503.1| DNA polymerase III, beta subunit [Synechococcus sp. JA-2-3B'a(2-13)] Length = 439 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 89/421 (21%), Positives = 181/421 (42%), Gaps = 52/421 (12%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIPAS 60 T E++D+ L R + + +PV +VL++A+ + + A + I A Sbjct: 30 FTCEQADLSHHLTSVGRAVASRPALPVLANVLVEADAETQRVALTAFDLNLCIRSEFEAQ 89 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G T+ A LL DIV +L G + + V + + ++S E+P Sbjct: 90 VRGSGRTTLPAKLLSDIVSRLPSGPVTLDASSQAQESAPVILMSAAGQYQVRSMSAEEYP 149 Query: 120 STKEE----------------EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163 + E + EL L + +T FA + +E + L G+ Sbjct: 150 TLPEISLRTADADGDFVGEESPTAQALELPIESLLQGIGQTLFAASGDETKQVLTGVHVK 209 Query: 164 I-NEEDLKLCAVATDGHRLAVAEVDIV------AQIAKMPSIIVPRKAVGEILRILSSKD 216 + + L ATDGHRLA+ +V+ A +P + + E+ RIL ++ Sbjct: 210 LLAGDPPCLEFAATDGHRLAIVQVEAEGIPVASAHGEIGLDFTIPARTLREVERILGTQT 269 Query: 217 --SSVKVSLSESRIHLNIE--------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 S+V++ S++ + ++ RL++G++P+Y +IP ++++ + Sbjct: 270 AASTVELRFDRSQVQFVLPPRASKTQCQQRITSRLLEGQYPDYNRLIPKQFERQVTLERR 329 Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 L ++++RV ++++ R VK +LS+ L ++ + PD+G ES+ V + +++ F Sbjct: 330 PLIESLERVGVLAAQRNDIVKFNLSAATQTLRISTEAPDVGSGEESLPVQMSGPDLELAF 389 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N +YLL+ + + +V L+ + + Y++MP++ Sbjct: 390 NVRYLLDALRVFHTQ-----QVSLELNGATQPAI---------WKPLGAMRLCYLVMPVQ 435 Query: 385 I 385 + Sbjct: 436 L 436 >gi|229818504|ref|YP_002880030.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333] gi|229564417|gb|ACQ78268.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333] Length = 378 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 86/390 (22%), Positives = 164/390 (42%), Gaps = 21/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK V+R + + + R + + +IPV V ++A+ G L + + E+ I A Sbjct: 1 MKFRVDRDVLADAVTWTARTLPTRPSIPVLAGVRIEADPQGALRLSSFDYEVSALSEIAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G++ VS LL +I R L GT V ++ G S F L + P ++P Sbjct: 61 DVPDAGTVLVSGRLLAEISRALPGKP----VDVELDGTRVVLTCGSSRFTLLTMPLDDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S S + + L V + A + +E L G+ I + KL +ATD + Sbjct: 117 SLPAMPPA-SGTVDAGTLAEAVAQVTIAASRDETLPLLTGVRVEIEGD--KLTLLATDRY 173 Query: 180 RLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSL----SESRIHLNIES 234 RLA+ E+ + +V + + E+ + L+S +V +SL + + Sbjct: 174 RLAMRELSWNPASPGLEATALVRARTLSEVAKSLTSA-GAVSISLPNGDGKDLVGFEAGG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L++G++P + + P + + L +A RVS+++ R ++L+ S + Sbjct: 233 RRTTSLLVEGDYPPVRRLFPEATTSHAVASTNELVEAARRVSLVA-ERNTPIRLTFSEGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D +A E++ P+ FN YLL+ + + + + Sbjct: 292 VVLEAGQGDDAQASEAIESTLTGEPITTAFNPGYLLDGLGVVGT-----EFTRLSFTHGT 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G+ K ++ D V Y++ P+R Sbjct: 347 KPAVLTGQPKLEDDDADRDV-FRYLIQPIR 375 >gi|189485007|ref|YP_001955948.1| DNA polymerase III beta subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] gi|170286966|dbj|BAG13487.1| DNA polymerase III beta subunit [uncultured Termite group 1 bacterium phylotype Rs-D17] Length = 373 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 108/392 (27%), Positives = 195/392 (49%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ E+ +++ + + KNT+P ++L +A +++ ++ EI + I Sbjct: 1 MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIKGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G IT+ + +I+++L +I + ++NI G S F L ++E+P Sbjct: 61 ITEDGGITIPSKRFANIIKELSTDDEIEIKADE--TNQINIKSGKSKFNLMGISKTEYPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +F + + +++++ FA + + RY LNGI+F + D KL VATDG R Sbjct: 119 IPEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFIL--GDSKLTMVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLNIESLSMS 238 LA A+ +I Q IVP KAV +ILR+L S +++ +S++RI I+ +++ Sbjct: 177 LAYAKTNIT-QAEVKGKAIVPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLL 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-----MSSVRIQAVKLSLSSD 293 LI+G FPNY+ VIP +D ++++N N AV ++++ +SS R AVK S D Sbjct: 236 STLIEGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQD 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ + +G + + Y P +I FN ++ EI +I + +F +S Sbjct: 296 LLKISASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSID-----EYSAIFEFTNS 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I + + N V+MPMR+ Sbjct: 351 LNPAVIYPETDE---------NYLCVVMPMRV 373 >gi|124004099|ref|ZP_01688946.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134] gi|123990678|gb|EAY30158.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134] Length = 376 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 177/387 (45%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V + + L +I +P+ + L DG L AS + IT I Sbjct: 1 MKFSVSSALLQRQLSAISGVIMSSPVVPILENFLFVLEDGKLIASASDLQTSITTEIEVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A +L D ++ L + E V I+ ++ L EFP Sbjct: 61 TQDTGSVAVPAKILLDTLKSLPEQPVTFSIDEEHKS--VEITSNTGHYKLAGENADEFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + L+S +L + T FA + +E+R + GI+ E+ VATDGHR Sbjct: 119 IAQADSKLNIALSSDILGKAIGNTIFATSNDELRPAMTGIYIQFKED--HTLFVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + V ++I+P+K++G + L + V S+S + + + M R Sbjct: 177 LIRYKREDVVGGGDPMTMIIPKKSLGLLRSTLPNDPVEVHAEFSDSNAFFSFDDIKMVCR 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMTV 299 LID FP+Y+N IP N L ++ +L ++ R++I ++ ++L ++ + L + Sbjct: 237 LIDERFPDYENAIPTDNPNVLTIDRVSLLNSLKRLAIYANKSTNQIRLKMTAAGTLQIFA 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ D +A E++ Y ++I FN K+++E++ NI++ E+ + + N + Sbjct: 297 EDLDFSNEANEALACEYQGDDLEIGFNAKFVIEMLSNITAK-----EIKIEMSTPNKAGI 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + K + + ++MP+ + Sbjct: 352 LKPTE------KIDNGDILMLVMPVML 372 >gi|313205876|ref|YP_004045053.1| DNA polymerase iii, beta subunit [Riemerella anatipestifer DSM 15868] gi|312445192|gb|ADQ81547.1| DNA polymerase III, beta subunit [Riemerella anatipestifer DSM 15868] gi|315022188|gb|EFT35216.1| DNA polymerase III beta subunit [Riemerella anatipestifer RA-YM] gi|325336683|gb|ADZ12957.1| DNA polymerase III, beta subunit [Riemerella anatipestifer RA-GD] Length = 376 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 170/386 (44%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S++ + L +I + P+ + L + ++ L+I +S E + ++ Sbjct: 1 MKFIVASSELQKALQVVSGVISSSQSRPILENYLFELDNQNLKITSSDGETTLVTSLEVM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPESEF 118 + G I V A ++++ + KE NE+G + I N+ + ++ Sbjct: 61 SEDQGKIAVPAKTFQELIKTFGEQPLTFTVKESANEMGALLEILDDRDNYEVALDNAEDY 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + S + S VL + T FA + + +R + G+ F E + V+TD Sbjct: 121 PELPEFDASQSVTIPSGVLAEALVNTLFATSNDTLRPVMTGVLFQFGENEANF--VSTDS 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL V + + ++ I+P+K + IL++ + V + +E+ + Sbjct: 179 HRLVVYKRK-DIKNSEPIEFIMPKKPLSIFKNILANTEEEVVIEFNENMAKFTFGNHIWI 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY VIP N L VN L ++ R SI+S+ V+ LS + L + Sbjct: 238 CRLIDGKYPNYSAVIPQENPNLLTVNRNLLLSSIRRASILSNKSTNQVRFKLSGNILHLH 297 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ + KA + Y ++I F+ K+L E++ +SS D+V+ R+ N Sbjct: 298 AEDTEFANKADMQIPCDYKGEDINIGFSSKFLTEMLSVLSS-----DDVLMRMSQPNRPG 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 + D D + + MP+ Sbjct: 353 ILEPID-----GLDENEHILMLSMPV 373 >gi|297570054|ref|YP_003691398.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus AHT2] gi|296925969|gb|ADH86779.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus AHT2] Length = 376 Score = 289 bits (741), Expect = 4e-76, Method: Composition-based stats. Identities = 102/390 (26%), Positives = 190/390 (48%), Gaps = 25/390 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V R D L L I +K T+ V ++LL+++ L + A+ E+ I IPA + Sbjct: 5 FNVSRLDFLTALAALQNITGKKGTLAVLANILLESDQEGLVMTATDLEVGIRCRIPAEIL 64 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 GS+T+ A L+++V+ + + E + + V IS S+ L EFPS Sbjct: 65 SPGSVTLPARKLFELVK---ESEEKHLHLEEQENSWVKISAESSDCRLSGISADEFPSFP 121 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATDGH 179 + ++++ +L+++T +++A E E + L GI I +E L V++DGH Sbjct: 122 PYREDNLVAIPTALMTDLIDKTIYSVAHEGENNFNLAGILLEKEILDEGHFLRMVSSDGH 181 Query: 180 RLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL++ E + ++ + I++P+K + EI ++ ++ +V + L E + L + Sbjct: 182 RLSMMEGKVETDLSSLEMDRVILIPKKGIQEIRKLC-DEEETVLLGLEEKQAVLKAGGYT 240 Query: 237 MSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + VRL+ G+FP+Y+ +I N K + ++ + ++ RV+I + R AV + +DK+ Sbjct: 241 LVVRLMSGDFPDYKGIIQVINKAKHIGIDRRKMMHSLKRVNIFTEDRYNAVNFIIENDKI 300 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ N D G A E + Y M+I FN KY E + + S++V ++S S Sbjct: 301 TLSSQNMDYGSAREEVPAGYQGESMEIGFNGKYFYEALQVMDSEKVKA-----YINSEES 355 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++G D V+MPM++ Sbjct: 356 PCLLQG---------DKDPGYLSVIMPMKL 376 >gi|320535592|ref|ZP_08035689.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421] gi|320147555|gb|EFW39074.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421] Length = 367 Score = 289 bits (741), Expect = 5e-76, Method: Composition-based stats. Identities = 104/385 (27%), Positives = 184/385 (47%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T ++ L+ L A II K I + +VLL A +G L +KA+ ++ IP Sbjct: 1 MKFTFDKDVFLKELAIAQEIISNKTAISILSNVLLTAKEGSLILKATDIKVNFETKIPVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV ++ L G E + + + F L++ +++FP Sbjct: 61 IQEEGSTTVFCDKFVSVISSLPQGEI--EITEKDQKLIITSVAKKAKFQLRTISDNDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + FE+ + K ++E+T F+++ +E RY++NG++ E+ L VATDG R Sbjct: 119 FSEPDNIQFFEINTKDFKEMIEQTVFSVSDDETRYFMNGVYMEKKNEN--LIFVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E + I II+P K + I R + + S+ + + E I N S S Sbjct: 177 LAYIEKNFGITIPDFKGIIIPPKILSIINR-RTQNEGSIAIGVGEKNIFFNFGSYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY VIP + DK + + L A+ RV+++ + + + +L+S L ++ + Sbjct: 236 LIDGQFPNYDKVIPENQDKSFEIEKSELTDALKRVALLVEQKTRRIFFNLNSGSLIISSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G+A E + Y + + NY Y+ E + I+S D + ++ +R Sbjct: 296 ENELGQAKEEIPCQYEGDEIVMALNYLYVEEPLKVINS-----DRIKIEFTDPMRAITLR 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + F+++MPM+I Sbjct: 351 AE---------PNKDFFHIIMPMQI 366 >gi|323141436|ref|ZP_08076326.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT 12067] gi|322414092|gb|EFY04921.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT 12067] Length = 369 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 108/387 (27%), Positives = 200/387 (51%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I+ + + + + R I K + P+ + + A D LEI+A + I+ I A Sbjct: 1 MIISCNTNSLNKAIQTVQRAIISKPSTPIFSGIHVIAADNKLEIQAMDLNMAISCTIDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I VSA D++RKL A+ +NE + +S G S + L E ++P Sbjct: 61 ISESGEIVVSAKHFADLIRKLP--AESLTISKNEEKHSIKVSSGKSEYQLFLMNEDDYPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L ++K L+++T F+ +T+E R GI +D K+ V T+ HR Sbjct: 119 FPTFDADRTIALDDGMIKELIKKTIFSCSTDEARPLFTGILVE--AKDGKITFVGTNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + S+I+P K +GEI R L+ + V +SL ++I + I+++ + Sbjct: 177 LAIKSLPYEGN--EELSMIIPSKVLGEISRNLTGEVPQQVLISLLNNQIMVVIDNIVIVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G+FP+Y+ VIP +VN L AV+RV++ S+ +K+S+++D++ +T Sbjct: 235 RLIEGQFPDYRRVIPPKFALTSKVNIKELAGAVERVALFSTDGDYSIIKMSVAADEITIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD+G +E ++ P+++ FN KY+L+I+ N+ + +E V +++S S V Sbjct: 295 SSSPDVGTGLEVVSCQTIGDPLNVAFNAKYILDILKNLEA-----EEAVLSMNTSLSPVC 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D+ + Y++ P+R+ Sbjct: 350 VTCADEP---------DYTYIVTPVRV 367 >gi|261403878|ref|YP_003240119.1| DNA polymerase III subunit beta [Paenibacillus sp. Y412MC10] gi|261280341|gb|ACX62312.1| DNA polymerase III, beta subunit [Paenibacillus sp. Y412MC10] Length = 380 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 189/396 (47%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ ++ + E + H + I + TIP+ + L + + AS +I I IPA Sbjct: 1 MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL KEN + IS G + + Sbjct: 61 DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + L +LKN++++T F+++T E L G+ + +N+ +LK Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKF- 176 Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 ATD HRLA + A ++++ K + E+ +I+ +++ V + ++++++ Sbjct: 177 -TATDRHRLATRSAHLEGADGISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289 I+ + R++DG +P+ +IP S+ EL ++ L +++DR ++S + L + Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + ++GK E ++ + + P+ I FN KY+L+++ + S ++++ Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVES-----EQLMI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D Y+++P R Sbjct: 351 AFMGVMSPIILKPLDDSKSQ---------YIILPYR 377 >gi|225181146|ref|ZP_03734592.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1] gi|225168115|gb|EEG76920.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1] Length = 367 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TV ++ + E L + K+T+PV +L Q++ + + A+ E+ I + P Sbjct: 1 MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGIRTSFPVP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + A +I+RKL E TE I G S F L E+P+ Sbjct: 61 DQEKGEVVLPAKA-VEIIRKLPGDTVSLTVNEENFLTE--IKSGQSEFQLYGLSTEEYPA 117 Query: 121 TKEEEYV---YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + Y+ E+ + + + +T FA + +E + GI F + + L L ++D Sbjct: 118 FADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLS--SSD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLA + Q A +VP K + E++RIL++ + SV+++++++++ + +++ + Sbjct: 176 TFRLATTSCRVQNQGADGV-FLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIKL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 S RL+D FPN VIP V+ + AV+R S++S V+LS+ + L + Sbjct: 235 SSRLLDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLVI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + GK E + V + ++I N +++L+++ D+ + L ++N Sbjct: 295 RASSK-FGKTQEHVPVELSGEGLEISLNSRFILDMLKVHEG-----DQCILELTNANKPC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R Y+++P++I Sbjct: 349 ILRD---------SLYQEYLYLVLPIKI 367 >gi|150005411|ref|YP_001300155.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482] gi|254884284|ref|ZP_05256994.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA] gi|294777189|ref|ZP_06742646.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510] gi|319640630|ref|ZP_07995347.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A] gi|149933835|gb|ABR40533.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482] gi|254837077|gb|EET17386.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA] gi|294449058|gb|EFG17601.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510] gi|317387751|gb|EFV68613.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A] Length = 374 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 179/372 (48%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN++P+ L++ DG L + AS E ++ ++ Sbjct: 1 MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ + + ++++ + F N E+ + + + + L E+P Sbjct: 61 ESDGDGRFAVSSKTILEALKEIPEQP--LTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + V+ + R+ FA A +E+R +NGI+F I ED+ VA+DG Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V VA + + I+P+K + +L + V++ + +E+ SM Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RVS+ SS +KL LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMMLISALRRVSVFSSQASSLIKLRLSENQIQIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ E++F L + + Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQ-----EILFELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ K + Sbjct: 351 VIVPVEQEEKED 362 >gi|160878164|ref|YP_001557132.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg] gi|160426830|gb|ABX40393.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg] Length = 370 Score = 289 bits (740), Expect = 5e-76, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 185/385 (48%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++++L + A + + K+T+P+ ++++ + +++ ++ EI I + S Sbjct: 1 MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIETIVKGS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ ++A + +I+RKL D E + I+ + F + EFP Sbjct: 61 IISNGSVAINAKVFSEIIRKLPDNEV---NVETDEKFMTTITCEKAKFTIAGKSAEEFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + EL+ LK ++ +T F+++ E + G F IN +L++ V+ DGHR Sbjct: 118 LPTIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRV--VSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +V++ A I+VP K + E+ +ILS + V + ++ + + + Sbjct: 176 ISIRKVELKNSYA-PKKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFDDTLVLS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++++N +DR +++ + + + + KL + Sbjct: 235 RLIEGEYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIEDKKLELK 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + I FN K+L++ + I D+EV L + + F Sbjct: 295 I-NTSIGTMDEDIDIEKEGKDILIGFNPKFLIDALRVID-----DEEVEIYLINPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I+ K++ + Y+++P+ Sbjct: 349 IKDKEE----------SYIYLILPV 363 >gi|329925046|ref|ZP_08279990.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5] gi|328940165|gb|EGG36497.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5] Length = 380 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 189/396 (47%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ ++ + E + H + I + TIP+ + L + + AS +I I IPA Sbjct: 1 MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL KEN + IS G + + Sbjct: 61 DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + L +LKN++++T F+++T E L G+ + +N+ +LK Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKF- 176 Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 ATD HRLA + A ++++ K + E+ +I+ +++ V + ++++++ Sbjct: 177 -TATDRHRLATRSAHLEGADGITFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289 I+ + R++DG +P+ +IP S+ EL ++ L +++DR ++S + L + Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + ++GK E ++ + + P+ I FN KY+L+++ + S ++++ Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVES-----EQLMI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D Y+++P R Sbjct: 351 AFMGVMSPIILKPLDDSKSQ---------YIILPYR 377 >gi|237727133|ref|ZP_04557614.1| DNA polymerase subunit III [Bacteroides sp. D4] gi|265750417|ref|ZP_06086480.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA] gi|229433989|gb|EEO44066.1| DNA polymerase subunit III [Bacteroides dorei 5_1_36/D4] gi|263237313|gb|EEZ22763.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA] Length = 374 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 178/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN++P+ L++ DG L + AS E ++ ++ Sbjct: 1 MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ + + ++++ + F N E+ + + + + L E+P Sbjct: 61 ESDGDGRFAVSSKTILEALKEIPEQP--LTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + V+ + R+ FA A +E+R +NGI+F I ED+ VA+DG Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V VA + + I+P+K + +L + V++ + +E+ SM Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RVS+ SS +KL LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ E++F L + + Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQ-----EILFELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPVEQEENED 362 >gi|310657318|ref|YP_003935039.1| DNA polymerase III subunit beta [Clostridium sticklandii DSM 519] gi|308824096|emb|CBH20134.1| DNA polymerase III subunit beta [Clostridium sticklandii] Length = 363 Score = 289 bits (740), Expect = 6e-76, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITV ++++ + + + KNTI + +L + +G L + ++ EI + I A Sbjct: 1 MKITVNQNELQSAINMTLKGVSNKNTIEILKGILFETYEGKLMLTSNNLEIGVQTVIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + + A ++ DIVRKL E + V IS F ++ F +FP Sbjct: 61 IQREGKVVIDAKIISDIVRKLPSSDVCLDVDETHI---VKISSTSLEFNIKGFSGEDFPI 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E Y E++S + K +V +T FA++ +E + L G + + VA DG R Sbjct: 118 PVSIEENYYKEISSDIFKEMVRKTSFAVSLDETKPLLMGELIEFKNNSINM--VAIDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + IIVP K + +I R++ +K+ E I ++ R Sbjct: 176 LAIKYIK-DDNFVTDSKIIVPGKTLVDISRMIPPSVDKIKLGFDEKHASFIIGETILTTR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GEF NY +IP +L+++ + A+DR +++ + +K+ +S D L ++ Sbjct: 235 LLEGEFINYSQIIPKEFSTKLKIHTKDFLYALDRACLVA--KNNLIKIDISDDNLKISSK 292 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N ++G E++ + ++I FN KY ++ + I ++ + L+++ S ++ Sbjct: 293 NDEIGNLEENIFIELEGSNLEIAFNAKYFMDALKTID-----EEYISLELNTNVSPCILK 347 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D DS Y+L+P+RI Sbjct: 348 PYDDDS---------YTYLLLPVRI 363 >gi|320532812|ref|ZP_08033589.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] gi|320134963|gb|EFW27134.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171 str. F0337] Length = 376 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 155/389 (39%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + E + R + + +PV V L+A L + + E+ + A Sbjct: 1 MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + VS LL DI + L + + G +V +S G + F L + ++P+ Sbjct: 61 IEEDGVVLVSGRLLADIAKALPNKPVDLEVE----GNKVAVSCGSARFSLAAMAADDYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V + + L V + A + ++ L + + L L +ATD +R Sbjct: 117 LPVMPTVAG-TIDAHDLARAVGQVSIAASRDDTLPLLTSVQIEVEGSSLVL--MATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDS----SVKVSLSESRIHLNIESL 235 LA+ E+ ++ + ++ + + ++ + L+S S + S I Sbjct: 174 LAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGR 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + L DG++P + + P S V L AV RVS+++ R + +S + L Sbjct: 234 RTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVA-DRSTPIHMSFTQGNL 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D +A E + + + FN YLL+ + ++ V ++ Sbjct: 293 ELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALN-----QPYVRLDFTHASK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G D + Y+LMP+R Sbjct: 348 PAVLTGMDS---IGGTEDSSFRYLLMPIR 373 >gi|330470834|ref|YP_004408577.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] gi|328813805|gb|AEB47977.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] Length = 373 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 84/387 (21%), Positives = 170/387 (43%), Gaps = 24/387 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 ER + E + + + + ++PV V+L+ DG L++ E+ + D G Sbjct: 2 ERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGTLQVSGFDYEVSSQVTVEVQGDADG 61 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125 + VS LL +I + L +G + + G + F L + P ++P+ E Sbjct: 62 AALVSGRLLAEITKALPGKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPTLPEMP 117 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 + ++ V + A + +E + G+ ++ L +ATD +RLA+ E Sbjct: 118 ESAG-TIDAAAFAAAVAQVAVAASRDETLPMMTGVRVELSGG--TLSMLATDRYRLALRE 174 Query: 186 VDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESLSMSV 239 ++ ++ + +VP + + + + L V ++LS E I + + + Sbjct: 175 MEWNPDDPEISINALVPARTLNDTAKALGPVGGQVTMALSQGAAGEGMIGFSGGTRRTTS 234 Query: 240 RLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL+DG +P +++ P S++ E RV + L + V RV++++ R V LS S+D L + Sbjct: 235 RLLDGANYPPVRSLFPASHNAEARVPVSTLIEVVKRVALVA-ERTTPVLLSFSADGLVVE 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + +A E+M + P+ I FN +YL++ + N+ + V + + Sbjct: 294 AGGTEEARASEAMEATFTGEPLTIGFNPQYLIDGLANLGAQ-----FAVLQFVDAFKPAV 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +D + Y++MP+R+ Sbjct: 349 ISPAGEDGELIG----GYRYLIMPIRV 371 >gi|297564208|ref|YP_003683181.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] gi|296848657|gb|ADH70675.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp. dassonvillei DSM 43111] Length = 384 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 81/400 (20%), Positives = 160/400 (40%), Gaps = 32/400 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+ V+R E + R + + +PV + ++ + L + E+ ++ Sbjct: 1 MKLRVDRDAFAEAVAWTARALPTRPAVPVLSGIRMELSPDGASLHLSGFDYEVSTRASVD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G+ V LL +IVR L G+ + G ++ I G + F L + P ++ Sbjct: 61 VLSEEPGAALVPGRLLAEIVRNLPSGSVHI----DSDGPKLRIVGGAARFTLITMPLEDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ +A+ V + A + ++ L G++ + + L L VATD Sbjct: 117 PTLPGMPGRIG-SVAADAFAAAVRQVAPAASRDDTLPMLTGVYLDFSGDTLSL--VATDR 173 Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL------------SSKDSSVKVSLSE 225 +R+AV E+ + + +VP + + + +R L +S V +S E Sbjct: 174 YRIAVRELWWSPEDQGLDAAALVPARTLSDTVRGLLTKSNVDIALSTASGGEGVSLSPGE 233 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 I + RLID EF Y P V T L +AV RV++++ R Sbjct: 234 GMIGFENGERRTTTRLIDSEFVKYAAWFPKEFSARAEVAVTPLAEAVKRVALVA-DRNTP 292 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 ++L+ S ++ + + + +A+E++ V Y P+ + F YL++ + + + D Sbjct: 293 LRLAFSEGEVVLEAGSGEDAQAVEAIEVGYEGEPLRLAFRPDYLMDGLAGVET-----DT 347 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D + + Y++ P+R+ Sbjct: 348 AYLNFTEPTKPAVFT----DVPAKEGENPSFRYLVQPLRV 383 >gi|323341101|ref|ZP_08081349.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis ATCC 25644] gi|323091522|gb|EFZ34146.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis ATCC 25644] Length = 379 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 86/395 (21%), Positives = 171/395 (43%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +V R+ L+ L A I K T+ + V L + L I S +I I + Sbjct: 1 MKFSVHRAAFLQYLNTAQTAISGKTTLEILTGVKLNLSADALTITGSNSDISIETILSIA 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 +++ GS+ + A +IV++L + +F + I G S F + Sbjct: 61 DEDAQLTIEEPGSVVLPARFFGEIVKRLPED---TFTLTVNDRFQTTIVSGASEFTINGV 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + ++ +LK ++++T A + +E R L GI INE +L A Sbjct: 118 ESEAYPHLPEIDSKDQLKIPGDLLKQIIDQTVIATSKQENRPMLTGIHLTINESELT--A 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + + I+VP ++ ++ ++L V++ +SE+++ ++ Sbjct: 176 VATDSHRLSQRKATLENNATGNYDILVPGDSLSKLSKMLGETQEDVELQISENQVLFILD 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292 S RL++G++PN +IP S + ++ +L ++++R S++S V+L + Sbjct: 236 HTSFYSRLLEGQYPNTAQLIPNSASTTVEIDAHSLLRSIERASLLSHEGHNNVVRLVIDP 295 Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + + ++P++G E ++ ++I FN Y+ + + EV Sbjct: 296 AANTATIFGNSPEIGNVEEVLDFNQIEGDELEISFNPDYMKDALHAFGQS-----EVKLN 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + D + ++ P+R Sbjct: 351 FTLPLRPFTIVPSEDDG--------SFIQLITPVR 377 >gi|160893410|ref|ZP_02074195.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50] gi|156864805|gb|EDO58236.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50] Length = 363 Score = 289 bits (739), Expect = 6e-76, Method: Composition-based stats. Identities = 86/379 (22%), Positives = 176/379 (46%), Gaps = 24/379 (6%) Query: 7 RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66 + +++ + + + + K T P+ + ++A +G +++ A+ EI I + +V G Sbjct: 2 KGKLMQGISNVSKAVSTKTTHPILSCIFIEAENGNIKLTANDMEIGIESYVEGTVIEEGK 61 Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 + + A LL DIVRKL D E+ + I S F + +F S E Sbjct: 62 VAIEAKLLSDIVRKLPDSEIHMETNED---FKTTIKCEKSLFTIAGKSGEDFSSLPVVEK 118 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 ++ L+ ++ +T F+++ E + G F ++ +L VA DGHR+A+ V Sbjct: 119 SKFITISQFTLREIINQTIFSISDSEYNNVMTGELFEVSNN--RLRVVAIDGHRIAIRNV 176 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 ++ + + +IVP KA+ I +I+S D V + +++ I + + RL++GE Sbjct: 177 ELKNESEDV-KVIVPGKALSYISKIVSGGVDDDVNIYFADNNILFEFDRTKVVSRLVEGE 235 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTVDNPDM 304 F N++ + +N +DR S++ + +KL++ + L + +D+ + Sbjct: 236 FFRIDNMLNVDYQIKFTINKREFLDCLDRSSLLIKESDKKPIKLTIEDNMLYLKIDSL-I 294 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364 G E + ++ + I FN K+L++ I I DD++ ++++ S I Sbjct: 295 GSMNEEIEIHKEGNNIIIGFNPKFLMDAIRAIE-----DDDITIYMNNTKSPCVI----- 344 Query: 365 DSKNNKDNKVNAFYVLMPM 383 KD + + Y+++PM Sbjct: 345 -----KDEEESYIYLILPM 358 >gi|291541863|emb|CBL14973.1| DNA polymerase III, beta subunit [Ruminococcus bromii L2-63] Length = 368 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 100/386 (25%), Positives = 191/386 (49%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ RSD+ + + R + K +IP VL++A L I EI IT I A+ Sbjct: 1 MKISCLRSDLATAISNVSRAVSTKASIPALEGVLIKAYGNTLNISGYNLEIGITTDIEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I VSA L DIVR+L + F E + I+ G N+ + E+P Sbjct: 61 IKEEGEIVVSAKLFLDIVRRLPEEIV---FIETDERMVTYIACGKVNYQIVGMSSVEYPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L + +L++++ +T +A++ + G + I ED +A DG+R Sbjct: 118 LPSFEQTDRITLNAKILRDMIRQTVYAVSENTAKPIYTGSLYEI--EDGVFKIIAIDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ ++ ++ +VP K E+L++L+ + + ++ + + I I++ + R Sbjct: 176 MAIRSENVDSESKNRF--VVPGKTQHEVLKLLTDDEENTEIIIGQRHITFKIKNYRIISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299 LI+G F Y++ IP E+ +N + AV+R+S++++ RIQ V+ S D++ ++ Sbjct: 234 LIEGTFIEYKSAIPKETKTEVVINTRTIIDAVERMSLLNNDRIQSPVRCIFSDDEIKLSC 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +G+A + ++V ++I FN +YLL+ + N + DE+ L+ S +++ + Sbjct: 294 TSA-VGRANDVISVPIIGESVEIGFNNRYLLDALKNADT-----DEIKLILNGSLTAMIV 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS +++PMR+ Sbjct: 348 KPVKGDS---------YLSIVVPMRL 364 >gi|52840258|ref|YP_094057.1| DNA polymerase III beta chain [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|52627369|gb|AAU26110.1| DNA polymerase III beta chain [Legionella pneumophila subsp. pneumophila str. Philadelphia 1] gi|307608752|emb|CBW98134.1| DNA polymerase III, beta chain [Legionella pneumophila 130b] Length = 367 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 23/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 62 D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSITV A DI+R L + A S + L V I S F L + P +PS Sbjct: 63 KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A++ +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSC--NNIAQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP DK + ++C +L++A+ R+ I++ + +AV L L +L + Sbjct: 236 KLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +AIE+++ + I N YLL+++ + S + ++ + ++ SS+ I Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFS-----EGQIRLSMSNTESSILI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MPM+I Sbjct: 351 ESLVND---------NYQYIIMPMKI 367 >gi|292669294|ref|ZP_06602720.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia ATCC 43541] gi|292649135|gb|EFF67107.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia ATCC 43541] Length = 380 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 98/397 (24%), Positives = 192/397 (48%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I++ ++D++ L + + K P+ + + A +G LE++ + E+ IPA Sbjct: 1 MNISLAKNDLISALQIVSKGLSTKPQTPILSGIYMTAKEGQLELQTTNYELGFILTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ + L + RKL ++S ++ G V I G + F L++ S+FP Sbjct: 61 IHNTGTAVLPGKYLTEFARKLP-AEEVSIDTDSADGLAV-IQSGAARFTLRTMEISDFPV 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVATD 177 + F + L LV+++ FA EE R G + +++ AT+ Sbjct: 119 LHHMDGTLHFTIKDRTLARLVKKSAFACLREEQRDRRPIFTGCQLEVEGKEITF--AATN 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236 HRLAV + ++ +I+P K + E+ R +SS+ + + V+ S +++ ++ S+ Sbjct: 177 VHRLAVKSEQLEEDAGQIR-VIIPAKFLEEVTRTISSEVPADIHVTCSYNQVSMSSGSIY 235 Query: 237 MSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293 M+ RLI+G FP+Y+ VIP + ++ ++ + AVDR S+++ + + VKLS + Sbjct: 236 MTARLIEGTFPDYRRVIPREENIRTKVTLDAASFASAVDRASLIARADQYNIVKLSFTQG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ ++P++G+A E++ + I FN YL++ + ++ SD + L S Sbjct: 296 LMRISSNSPEIGEAEETIPAEVTGDDVTIAFNASYLMDALKSLDSDTCI-----LSLQGS 350 Query: 354 N------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N S + IR ++ N YV+ P+R Sbjct: 351 NEQGVNLSPMTIR---------EEADPNYIYVVTPVR 378 >gi|256419662|ref|YP_003120315.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588] gi|256034570|gb|ACU58114.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588] Length = 372 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 89/370 (24%), Positives = 164/370 (44%), Gaps = 11/370 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V S +L+ L +I +P+ L + L + A+ E + + Sbjct: 1 MKFIVSSSTLLKQLQQISGVINSNTVLPILEDFLFLIDKNELTVVATDLETVMKVKLEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G I + A +L D ++ L D N V I+ + + + FP Sbjct: 61 AKESGRICIPAKILMDSLKNLPDQPLTFHIDLNSYA--VEITSDNGKYKVMGENPENFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF ++++ L + +T FA++ +++R + G+FF + L VATD HR Sbjct: 119 EPAADDTTSFTVSATALVTAINKTLFAVSNDDLRPAMTGVFFELTPTSLTF--VATDAHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + K + IVP+K + + L DS +K++ S++ + + M R Sbjct: 177 LVKYVRT-GVECPKAETFIVPKKPLNLLKSALPDNDSEIKIAYSQNHFFVMHDGAQMICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID FP+Y+ VIP N L V ++ + A+ RVS+ ++ V LS++ +L ++ Sbjct: 236 LIDARFPDYKVVIPKDNPYRLTVAKSDFQNALKRVSVFANKSTNQVALSITGSELQLSAQ 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D + E M+ Y M I FN K+L+E+++ DE+ L + + + Sbjct: 296 DVDFSFEGNERMSCQYTGDDMQIAFNAKFLIEMLNAAEG-----DEITIELSTPTKAGIL 350 Query: 360 RGKDKDSKNN 369 + +K+ + Sbjct: 351 KPSEKEENED 360 >gi|255310878|ref|ZP_05353448.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276] gi|255317178|ref|ZP_05358424.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276s] gi|255348439|ref|ZP_05380446.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70] gi|255502981|ref|ZP_05381371.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70s] gi|255506651|ref|ZP_05382290.1| DNA polymerase III subunit beta [Chlamydia trachomatis D(s)2923] gi|301335548|ref|ZP_07223792.1| DNA polymerase III subunit beta [Chlamydia trachomatis L2tet1] gi|296434664|gb|ADH16842.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/150] gi|296436517|gb|ADH18687.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11222] gi|296438381|gb|ADH20534.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/11023] Length = 366 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 1 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 61 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|291455694|ref|ZP_06595084.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213] gi|291382622|gb|EFE90140.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213] Length = 374 Score = 289 bits (739), Expect = 7e-76, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 172/387 (44%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + + P+ V L+A DG L+ A EI I A Sbjct: 1 MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS V LL DI + L+ G+ + I+ G S F LQ P++E+P Sbjct: 61 VDEVGSALVLGKLLADITKSLRSEKTYLTTD----GSTLTITSGKSKFTLQLMPDAEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + A + + V + A++ EE R L G+ ++ K+ +TD R Sbjct: 117 LPVVPPMLGQVDAQTFV-QAVNQASVAVSREENRPVLTGVRMQFQDD--KVIMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237 LA A Q A + +I + R ++ + + + ++++ + Sbjct: 174 LARAAFTWTPQDANVDTITLVRGSLLKDVARSLDEHQNIRLDFDADNPTLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + + VN +L A+ RV++++ R +++ + +L + Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMMFTGQELAL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D +A E++++ + + + FN YL E + I + V ++ + V Sbjct: 293 SAGSADEAQANETLDIDMDGDEITVAFNPSYLKEGLSAI-----AEPFVRIKMTTPVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|239618231|ref|YP_002941553.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1] gi|239507062|gb|ACR80549.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1] Length = 367 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 182/388 (46%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAI-P 58 M+ ++ R++ L L + K P+ +L + A D LE+ A+ E I + P Sbjct: 1 MRFSIPRNEFLTRLESVSTAVASKTVKPILSGILFRTAEDSKLELIATDLETSIKTYVQP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + G V A +L +I+R L DG F++ T + I S F L + EF Sbjct: 61 SEISGTGQFVVDAKVLLEIMRNLPDGKVFFEFQD----TNLVIRMEKSRFVLPTMSGEEF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + + E + + L+ +++R F A +E LNG+++ + L+L VA DG Sbjct: 117 PEVEPAQGGWELETSVTALEIMIDRVLFCAAKDEFMRNLNGVYWELEGGYLRL--VAADG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237 RLA+AE + ++ K++ ++ + ++ +K+ +R+ + M Sbjct: 175 FRLALAEEKTNQNLEDH--FLLTLKSMKDLQSSIKTAGSDDMKIVYDGTRVGFYFDGTEM 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 R+++ +FP+Y+ V+P + + N ++L A+ R SI + + ++K+ + D + + Sbjct: 233 VARVVEADFPDYKKVLPKAFKTRVVANTSSLSDAIRRASIAARLGSDSIKIEIKEDNMKL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +PD G++ E + + + + I FN K+LLE I + +EV SNS + Sbjct: 293 IAKSPDHGESSEELEIKKDGEDLIIAFNPKFLLEATKKIDT-----EEVELNFVDSNSPL 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + Y++MP+R+ Sbjct: 348 QMNPVDVE---------GYLYIIMPIRL 366 >gi|271970493|ref|YP_003344689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] gi|270513668|gb|ACZ91946.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021] Length = 365 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 81/386 (20%), Positives = 160/386 (41%), Gaps = 23/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R + + + R + + +PV +LL+A D L + A ++ +I A Sbjct: 1 MKFQVNRDVLADAVAWVARALPNRPALPVLSGLLLEAGDD-LVLSAFDYDVSARASIEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + +L +I R L + G+E ++ G + F L + P +FP+ Sbjct: 60 VAEPGRVLIPGRILAEITRSLPAEP----VEIVTSGSEAVLTCGSAEFGLLTMPVEDFPT 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V + V + A + +E L GI I+ E + ATD +R Sbjct: 116 LPSMPPKIGAVG-GGVFASAVGQVAPAASRDESLPMLTGIRIDISGE--TVAMAATDRYR 172 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A E + + +VP + + E+ R L + V ++L + S +V Sbjct: 173 IAAREFGWRPEEPGAAAAAMVPARVLVEVARSLRGGE--VSMALGDGVAGFESVGRSTTV 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL+D +F +Y++ + + A+ RV++++ R A++LS S ++ + Sbjct: 231 RLLDEQFIDYRSRLSDDWSIRADLRVAPFIDAIKRVALVA-ERNTAIRLSFSQGQVLIQA 289 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D+G+ E M + + I F ++LL+ + + + + V ++S + I Sbjct: 290 GGGDIGRGTEVMEAELSGDGIQIAFQSQFLLDGLAGVET-----EFVRLNMESPSRPALI 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ Y++M +R+ Sbjct: 345 TEVPGDA------DPAFRYLVMSLRL 364 >gi|320531086|ref|ZP_08032115.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399] gi|320136668|gb|EFW28621.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399] Length = 380 Score = 288 bits (738), Expect = 8e-76, Method: Composition-based stats. Identities = 108/393 (27%), Positives = 194/393 (49%), Gaps = 24/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +SD+L L + + K P+ + L A DG LE++++ EI IPA Sbjct: 1 MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ + L + RKL D I E+ LG I+ G++ F L+ +FP Sbjct: 61 VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLG---VITSGNARFTLRQMEVDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVAT 176 + + F + VL +LV+++ FA EE R G + ++ L AT Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITL--AAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235 + HRLAV I + ++ +++P K + E+ R ++S+ + +++ S ++I ++ E + Sbjct: 176 NVHRLAVKSEHIESDAGQIR-VVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 M+ RLI+G FP+Y VIP + ++ +N + AV+R S++S + + VKL Sbjct: 235 YMTSRLIEGSFPDYHRVIPRDENIRTKVTMNAADFAAAVERASLISRTDQYNIVKLEFED 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE-VVDDEVVFRLD 351 + L +T ++PD+G+A E++ P I FN YLL+ + ++ SD ++ + Sbjct: 295 NLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSDICILSLQAPNEQG 354 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + IR ++ + YV+ P+R Sbjct: 355 QNLSPITIR---------EEADKDYIYVVTPVR 378 >gi|309388283|gb|ADO76163.1| DNA polymerase III, beta subunit [Halanaerobium praevalens DSM 2228] Length = 370 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 78/384 (20%), Positives = 178/384 (46%), Gaps = 17/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ + L R + + T+P+ + L ++ +L +K++ E+ I + Sbjct: 1 MKFSINQKELYKALNIVRRAVAKNQTLPILTGIFLSLDNNILTLKSTDLELGIKYDLKVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GSI + A +I+R+L + N+ ++ I +S F + F EFP+ Sbjct: 61 GQVNGSIVLPATQFLNIIRELPNQKI--EIDLNKDKWQLEIKCLNSLFKINGFDPDEFPN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +F L + K ++++ + + +E + L G FF + E +K+ V+T+ +R Sbjct: 119 LPKVEDSANFSLPAKKFKEMIKKVRISTSKDETQPALTGAFFEVETEKVKM--VSTNTYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ E + +A+ ++I+P + E+ +L + D SV++ + + + + R Sbjct: 177 LSYIEAPLKTSVAEKIAVILPGSTLQELNNLLEA-DESVEIEVDNNYARFTFAGIEVISR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP ++ + + + L AV R S+++ + + L + + Sbjct: 236 LIEGKFPNYELVIPDESNSKFSADLSQLHGAVKRASLIAKLDANIITLLAEDGLMEINSA 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 G A E + + I + Y ++++ + + +E+ + + + ++ Sbjct: 296 EGSSGYAHEELKIEIEGPKQKINIDAGYFIDVLKVLDA-----EEINIEMIGPLNPLVVK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + + Y++MP+R Sbjct: 351 SQ-------SEAGDKFIYLIMPVR 367 >gi|255535062|ref|YP_003095433.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium 3519-10] gi|255341258|gb|ACU07371.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium 3519-10] Length = 385 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 16/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V ++ + L +I + P+ + L + ++ L+I AS E + ++ Sbjct: 10 MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLEVR 69 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118 D G V A + D V+ + K+ E G + I NF + ++ Sbjct: 70 SDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAEDY 129 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + S ++++ +L + T FA + + +R + G+ F E++ V+TD Sbjct: 130 PELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNF--VSTDS 187 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL V + A+ I+P+K + IL++ V + +E+ + Sbjct: 188 HRLVVYKRT-DLMNAEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIWI 246 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG++PNY VIP N L +N L ++ R SIMS+ V+ LS + L + Sbjct: 247 CRLIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHLH 306 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ + KA + YN ++I F+ K+L E++ +SS D++ ++ N Sbjct: 307 AEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSS-----DDITMKMSQPNRPG 361 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I D + N + MP+ Sbjct: 362 IIEPVD-----GLETDENILMLSMPV 382 >gi|167461552|ref|ZP_02326641.1| DNA polymerase III subunit beta [Paenibacillus larvae subsp. larvae BRL-230010] gi|322381373|ref|ZP_08055376.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] gi|321154949|gb|EFX47220.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae subsp. larvae B-3650] Length = 380 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T+ ++ + E + H + I K TIP+ + + A + + AS +I I P Sbjct: 1 MKLTILKNYLTESIQHVSKAISSKTTIPILTGIKIDAATSGVTLTASDTDISIQSFTPNE 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GS+ + A +I+RKL E + I G S + Sbjct: 61 NEEIAIIELHQPGSVVLPAKFFMEIIRKLPSQKI---EIEVRDHFQTIIRSGSSEIQIMG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E+P + E ++ S +LK ++++T FA++T E L G+ +H+ D KL Sbjct: 118 LDPEEYPLLPQLEESKMIQIPSDLLKTMIKQTSFAVSTNETTPILTGVLWHVQ--DGKLK 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 +A D HRLA E+ + +A+ +I++ + + E+ +IL +++ + + +S++++ Sbjct: 176 FIACDRHRLASREISLDLDVAQTFHNIVISGRTLNELSKILPDQNALIDILVSDNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS- 289 I S+ R++DG +P+ +IP S EL VN L A+DR ++S + VKL Sbjct: 236 INSILFYSRILDGTYPDTSKLIPQSFQTELIVNTKELADAIDRAYLLSREDKTNIVKLIM 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + + ++ + ++GK E +++ + + I FN KY+L+ + + S D + Sbjct: 296 LEDETIEISSSSSELGKVTEQLSLQSFKGERLRISFNSKYMLDALKVMDS-----DYIQI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + I+ +D+ N +++P R Sbjct: 351 GFTGAMQPIIIKPEDQ---------ANILQLILPYR 377 >gi|313894749|ref|ZP_07828310.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137 str. F0430] gi|312976658|gb|EFR42112.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137 str. F0430] Length = 380 Score = 288 bits (738), Expect = 9e-76, Method: Composition-based stats. Identities = 108/393 (27%), Positives = 194/393 (49%), Gaps = 24/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT+ +SD+L L + + K P+ + L A DG LE++++ EI IPA Sbjct: 1 MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ + L + RKL D I E+ LG I+ G++ F L+ +FP Sbjct: 61 VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLG---VITSGNARFTLRQMEVDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVAT 176 + + F + VL +LV+++ FA EE R G + ++ L AT Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITL--AAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235 + HRLAV I + ++ +++P K + E+ R ++S+ + +++ S ++I ++ E + Sbjct: 176 NVHRLAVKSEHIESDAGQIR-VVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 M+ RLI+G FP+Y VIP + ++ +N + AV+R S++S + + VKL Sbjct: 235 YMTSRLIEGSFPDYHRVIPRDENIRTKVTMNAGDFAAAVERASLISRTDQYNIVKLEFED 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE-VVDDEVVFRLD 351 + L +T ++PD+G+A E++ P I FN YLL+ + ++ SD ++ + Sbjct: 295 NLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSDICILSLQAPNEQG 354 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S + IR ++ + YV+ P+R Sbjct: 355 QNLSPITIR---------EEADKDYIYVVTPVR 378 >gi|333030103|ref|ZP_08458164.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011] gi|332740700|gb|EGJ71182.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011] Length = 374 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 99/369 (26%), Positives = 173/369 (46%), Gaps = 13/369 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L Q +G+L + S E + +I Sbjct: 1 MKFIVSSAALYSHLQAVSRVINSKNALPILDCFLFQLENGVLSVTVSDSETTMETSIDVI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G I ++A L D ++++ + F + EV +++ + + L E+P Sbjct: 61 ECVTEGKIAIAAKTLLDALKEIPEQP--LTFSVDSSTLEVTVTYQNGQYSLMGQNADEYP 118 Query: 120 STKEEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + F ++ L + RT +A A +E+R +NG++F I ED+ + VA+DG Sbjct: 119 QSAALNNESVKFTMSVDTLLAGINRTVYATADDELRPVMNGVYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L +V + A+ + I+P+K + IL + V++S E + + M Sbjct: 177 HKLVRCQV-LDAKGNDRAAFILPKKPANLLKNILPKEQGEVEISFDERNAIFALGNYHMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N ++ V+ + A+ RV+I SS VKL L + ++ Sbjct: 236 CRLIEGRYPNYNSVIPKDNPFKVTVDRVSFIGALRRVAIFSSQASSLVKLRLKDSSMNIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y M I F +L++I+ NISS DEVV L + + Sbjct: 296 AQDIDFSTSAEENLVCQYTGTDMSIGFKSTFLIDILSNISS-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDS 366 I +++ Sbjct: 351 VIIPVEQEE 359 >gi|304405888|ref|ZP_07387546.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus YK9] gi|304345131|gb|EFM10967.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus YK9] Length = 380 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ ++++ + + + + IP+ + + + AS +I I IP Sbjct: 1 MKLSIAKNELNDAIQQVAKAASTRPAIPILGGIKFDVTHQGITLTASDTDISIQSFIPVE 60 Query: 61 --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 VD GS+ + + + +IV+KL E I G ++ + Sbjct: 61 SGDSIVAKVDKPGSVVLPSKFIVEIVKKLPSDEV---EIEVGEQFITMIRSGSTDIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E ++ +LK+L+ +T FA +T E L G ++ E +L+ Sbjct: 118 LDPEEFPVLPSIEQSDVLQIPGDLLKSLIRQTVFAASTSEQTPILTGALVNLFEGELRF- 176 Query: 173 AVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRLA + + ++++ K + E+ R++ + V++ +++++ Sbjct: 177 -VATDRHRLANRSAHVDTLPSLRFSNVVISAKTLNELSRLIPDASALVEMVVADNQALFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289 I S+ RL+DG +P+ +IP S EL V+ L A+DR +MS + V+L + Sbjct: 236 IGSVLFYSRLLDGTYPDTSKIIPQSYKTELVVDTKKLTDAIDRAYLMSREEKTNIVRLIT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L + ++ + ++G+ E + + + I FN KY+L+++ I S +++ Sbjct: 296 LEHGGIEISSSSSELGRVTEQLEAFKMEGEALRIAFNSKYMLDVLKVIDS-----EQLNI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + S + IR D ++ Y+++P R Sbjct: 351 QFTGAMSPIIIRPADHP---------HSTYIILPYR 377 >gi|237710743|ref|ZP_04541224.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA] gi|229455465|gb|EEO61186.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA] Length = 374 Score = 288 bits (738), Expect = 1e-75, Method: Composition-based stats. Identities = 96/372 (25%), Positives = 178/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN++P+ L++ DG L + AS E ++ ++ Sbjct: 1 MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLFLTASDSETTLSTSLEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ + + ++++ + F N E+ + + + + L E+P Sbjct: 61 ESDGDGRFAVSSKTILEALKEIPEQP--LTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + V+ + R+ FA A +E+R +NGI+F I ED+ VA+DG Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V VA + + I+P+K + +L + V++ + +E+ SM Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RVS+ SS +KL LS +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ E++F L + + Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQ-----EILFELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPVEQEENED 362 >gi|154483924|ref|ZP_02026372.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC 27560] gi|149735415|gb|EDM51301.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC 27560] Length = 366 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 174/386 (45%), Gaps = 25/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++SD++ + + + K T+ + +L+ A +G ++ A+ E+ I + Sbjct: 1 MKLVCKKSDLITGINIVMKAVSSKTTMSILECILIDATEGEIKFTANDMELGIETKVEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI + A + +IVRKL D + + T+ NI+ +S F + +F Sbjct: 61 IIEAGSIAIDAKIFSEIVRKLPDNDVVIEVNDE---TKANITCENSKFNILVKSADDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L+ LK L+ +T F + + L G F + +L VA D R Sbjct: 118 LPEIEKKDKITLSQFALKELIRQTIFTVNDADKNKILTGELFEVMGN--RLKVVALDKFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A+ +++ ++VP K++ EI +IL+ D V + + + I + + Sbjct: 176 IAIRNMELKEDYGN-FKVLVPGKSLNEISKILNGGVDDEVNIYFTSNHILFEFDETKVVS 234 Query: 240 RLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297 RLI+ + + +I ++ +N + +DR +++ + V L++ ++ + Sbjct: 235 RLIECSNYFDTDKMISNDYKTKITINKKEMANCIDRATLLIKEGDKKPVFLTIKDTEMEL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ N +G ES+ + M I FN K+L++I+ + S +EV + + Sbjct: 295 SI-NTFIGSMDESIPIVREGSDMMISFNPKFLIDILRVLDS-----EEVNIYFTNPKAPC 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 FIR D++ + YV++P+ Sbjct: 349 FIR----------DDENSYIYVVLPV 364 >gi|225012856|ref|ZP_03703289.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A] gi|225002978|gb|EEG40955.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A] Length = 372 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 87/386 (22%), Positives = 171/386 (44%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L +I NT+P+ + L + N L + AS E + I Sbjct: 1 MKFIVSSAALLKELQMLGGVINSTNTLPILDNFLFEINGNSLTLTASDLETTFSTRIAVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + + A LL D ++ + E V IS + + + +EFP Sbjct: 61 SESNSMVALPARLLLDTLKTFPEQPLTFIKTE---KNTVEISANNGKYAVAYVEGNEFPK 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + S +L + T FA +++R ++G+FF + E L VATD H+ Sbjct: 118 AAQVNDAKTTLIQSDILYTAINSTLFASGNDDLRPVMSGVFFQFSTESLTF--VATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L I+P+K + + IL S + + +++ +++ R Sbjct: 176 LVKYTRS-DVTATDTSEFIMPKKPLQLLKGILQGSISEISIEYNDTNAQFRFGDSALTCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG++PNY+ VIP N +++V+ + +V RVSI S+ ++L ++ L ++ + Sbjct: 235 LIDGKYPNYEAVIPKENPNQMQVSRVSFLNSVRRVSIFSNKTTHQIRLKIAGAALQISAE 294 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D A E ++ Y + I FN ++L+E+++N+ D++ + N + + Sbjct: 295 DFDYSNSAEERLDCDYQGDDIQIGFNSRFLIEMLNNMEC-----DQIKLSMSLPNRAGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N + + ++MP+ + Sbjct: 350 TPLD-----NTEEGEHITMLVMPVML 370 >gi|224023849|ref|ZP_03642215.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM 18228] gi|224017071|gb|EEF75083.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM 18228] Length = 374 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 181/372 (48%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN++P+ L++ DG L + AS E ++ +I S Sbjct: 1 MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLIELQDGTLSMTASDNETTLSTSIEVS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G VS+ L + ++++ + F+ N E+ + + + + L E+P Sbjct: 61 DYEEDGRFAVSSKTLLEALKEIPEQP--LSFQINSSNLEITVQYQNGKYSLMGQSADEYP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E E + + +L + R+ FA A +E+R +NGI+F I ED+ L VA+DG Sbjct: 119 QASELNEGAVQVVMGADILTTGINRSLFATADDELRPVMNGIYFDITTEDITL--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V A + + I+P+K + +L + V++ + +E+ M Sbjct: 177 HKL-VRNKTYAAHGEEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNATFTLENYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + ++ + A+ RVS+ SS +KLSLS + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAIIDRASFISALRRVSVFSSQASSLIKLSLSENMMKIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A ES+ Y+ M I F +L++I++NI+S V+ L + + Sbjct: 296 AQDIDFSTSAEESLICQYDGNAMSIGFKSSFLIDILNNIASQ-----NVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 + ++++ + Sbjct: 351 VVVPEEQEENED 362 >gi|15834966|ref|NP_296725.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg] gi|270285140|ref|ZP_06194534.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg] gi|270289162|ref|ZP_06195464.1| DNA polymerase III subunit beta [Chlamydia muridarum Weiss] gi|301336535|ref|ZP_07224737.1| DNA polymerase III subunit beta [Chlamydia muridarum MopnTet14] gi|14194691|sp|Q9PKW4|DPO3B_CHLMU RecName: Full=DNA polymerase III subunit beta gi|7190388|gb|AAF39208.1| DNA polymerase III, beta subunit [Chlamydia muridarum Nigg] Length = 366 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 186/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 1 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 61 VYESGSVTIPSRRFFQLIREL---TEANIEVAANSGEMATITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I+ + + V TDG R Sbjct: 118 LPDMQNALRFTLDSEQLKDMFQRTSFAVSREESRYVLTGVLLSIS--NGTMTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R ++S+D + L +++I + + + + Sbjct: 176 LAKIDTNISLDPSFSGDYIIPIKAVEEIIR-MASEDVQSTIFLDQTKIAVECGNTLLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 235 LLSGEFPDFSPVISTQSSVQLNLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|218130098|ref|ZP_03458902.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697] gi|317476591|ref|ZP_07935836.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] gi|217987602|gb|EEC53930.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697] gi|316907187|gb|EFV28896.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA] Length = 374 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + F N E+ + + + + L EFP Sbjct: 61 ESDTDGRFAVTAKTLLDALKEIPEQP--LTFDINTDSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + V + E + +E+ M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLENYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y PM I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPVEQEENED 362 >gi|25026559|ref|NP_736613.1| DNA polymerase III subunit beta [Corynebacterium efficiens YS-314] gi|259508309|ref|ZP_05751209.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314] gi|23491838|dbj|BAC16813.1| putative DNA polymerase III beta subunit [Corynebacterium efficiens YS-314] gi|259164127|gb|EEW48681.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314] Length = 394 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 164/398 (41%), Gaps = 28/398 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V R D++ +G R + K T PV +L+ A+D LE+ E+ + A V Sbjct: 8 FRVAREDLVTSVGWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYEVSTRVRVSAEVA 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 V G I V+ +L +I+ L + G++V +S G ++F L S P ++P Sbjct: 68 VPGRIAVAGKILSEIIGTLPNKPVDFRLD----GSKVLVSCGSASFELPSIPLDDYPPLP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + + V + A ++ L G+ I+ + L ATD RLA Sbjct: 124 SLPE-RTGSINPKLFTEAVTQVASAAGRDDSLPMLTGVNMEIHGNQISL--AATDRFRLA 180 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + + + + + +++P K + E R L + + + +++ E + + Sbjct: 181 LRTFEWDPASSGIEAKLLIPAKTLLENARTLDTGLNEEIGIAVGTGEQVGREGLFGIRTD 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN Q ++P + V L AV RVS+++ R + + S Sbjct: 241 NRESTTRMLDADFPNIQPLLPKEHTAIASVEIAPLLDAVRRVSLVA-DRNAQIIMEFSDG 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ ++ D G A E + + + I FN YL + + I + VF Sbjct: 300 QVILSAGGSDAGHAQEVLPCAFTGKDLKIAFNPGYLKDGLSVIPTS-----RAVFGFTEP 354 Query: 354 NSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385 + + + ++ + Y+LMP+R+ Sbjct: 355 SRPAIMIPEPEEFPEADERGVFQTPDTYFTYLLMPVRL 392 >gi|227831832|ref|YP_002833539.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC 700975] gi|227452848|gb|ACP31601.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC 700975] Length = 444 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 171/399 (42%), Gaps = 30/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 58 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVD 117 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL DIV L + +I +E+ +V + G S F L P ++P Sbjct: 118 EPGRIAVAGKLLSDIVASLPN-KEIEMTQED---NKVLLICGSSRFELPLIPLDDYPQLP 173 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + + A ++ L G+ IN +++ ATD RLA Sbjct: 174 VLPEVTGTINPQ-LFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEM--TATDRFRLA 230 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + + + + + ++VP K + E R L + + V++++ E L+ + Sbjct: 231 MRTFEWEPVSSDVQAKLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHAD 290 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN ++P ++ + L++A+ RVS+++ R +++ S Sbjct: 291 NRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEG 349 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + D G+A E++ +N I FN YL + + + ++ VVF Sbjct: 350 EVTL-AAGADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTN-----RVVFGFTE 403 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ ++ + + Y+LMP+R+ Sbjct: 404 PSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 442 >gi|123965235|ref|YP_001010316.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT 9515] gi|123199601|gb|ABM71209.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT 9515] Length = 385 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 191/399 (47%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M+I +++ + + + + T P+ ++LL A+ G + + + I + Sbjct: 1 MEIVCNQNEFNYAIQLVSKAVSSRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G+IT+ + LL +IV KL +S ++ + I +F ++ P ++ Sbjct: 61 ATVKKSGAITIPSKLLAEIVNKLPSETPVSLDVDDSSDNIL-IKSDRGSFNIKGIPSDDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E S + S ++ T FA ++++ + L G+ F N + L+ + ATDG Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKLTIFASSSDDSKQLLTGVNFTFNLKFLE--SAATDG 177 Query: 179 HRLAVAEVDIVAQ---------IAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAV VD S+ +P +++ EI +++S + ++S+K+ + + Sbjct: 178 HRLAVVLVDKKENFDEVADLSSNEDNLSVTIPTRSLREIEKLVSLRTSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP K N L +++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGSYPNYSQLIPDDFSKLFTFNTKILIDSLERIAVLADQQSSVVK 297 Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L L ++ D D+G A E + V Y+ DI FN +YLLE + ISS + V Sbjct: 298 IKLEEKGLALISADAQDIGNASEIVPVSYDFDQFDIAFNVRYLLEGLKVISS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +F+ + S + + +D S + Y++MP+++ Sbjct: 353 LFKCNLSTTPAVLVPEDNIS--------SFTYLVMPVQV 383 >gi|58700013|ref|ZP_00374572.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533470|gb|EAL57910.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 332 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 117/337 (34%), Positives = 200/337 (59%), Gaps = 5/337 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N+I V + ++A G +++ A+ +I + ++ A+ Sbjct: 1 MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +SAH L+DIV+KL ++F N+ ++ +S G++NF L + S FP+ Sbjct: 61 VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+ L VATDGHR Sbjct: 119 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ + I +I+PRK V E+L+IL + +KV LS+ +I L + + Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG FPNY+ VIP S DK + + L +DRVS++ S +++++K SL L + + Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 + + A ES+ V YNE P++I FN +YLL+++ I Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK 332 >gi|29346774|ref|NP_810277.1| DNA polymerase III subnit beta [Bacteroides thetaiotaomicron VPI-5482] gi|253572230|ref|ZP_04849633.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6] gi|298386579|ref|ZP_06996135.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14] gi|29338671|gb|AAO76471.1| DNA polymerase III, beta chain [Bacteroides thetaiotaomicron VPI-5482] gi|251838005|gb|EES66093.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6] gi|298260956|gb|EFI03824.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14] Length = 374 Score = 288 bits (737), Expect = 1e-75, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + + N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPEQPLTFYV--NTDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E E+ + VL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAVLGENAVRVEMEAGVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y+ M I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQVCQYSGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPVEQEENED 362 >gi|152963974|ref|YP_001359758.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] gi|151358491|gb|ABS01494.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] Length = 383 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 173/389 (44%), Gaps = 22/389 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPAS 60 ++ VER + + + A R + + +PV VLL+A D G L++ E+ +PA Sbjct: 10 ELQVERDVLADAVAWAARALPSRPPVPVLAGVLLEATDEGTLKLSTFDYEVSARVELPAD 69 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL DI R L + + G++V ++ G S F L + E+P+ Sbjct: 70 VRTAGRVLVSGRLLADISRSLPNRPVTLTTE----GSKVVVTCGASRFTLLTMTVEEYPA 125 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S EL + V + A + +E L G+ I + +L +ATD +R Sbjct: 126 LPTLPDS-SGELPGAEFTEAVAQVTVAASRDETLPILTGVRMEIEGD--RLTLLATDRYR 182 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLS 236 LAV E+ + ++ +V + + ++ R L S S + +++++ + I Sbjct: 183 LAVRELRWNPSSPDISAVALVRARTLSDVARSLGSS-SMLTMAMADGKSDLIGFQAGGRY 241 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + L+DGE+P + + P + V+ L +AV RV++++ R V+L L Sbjct: 242 STSLLVDGEYPKVRALFPAESPTHAVVSTAALTEAVKRVALVA-ERNTPVRLRFEDGVLS 300 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + +A E++ + I FN ++LL+ + +++ S Sbjct: 301 LEAGQGEDAQATEALEAALVGESIAIAFNPQFLLDGLGALAA-----PFARLSFTQSTRP 355 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ + + D+ + Y+LMP+R+ Sbjct: 356 AVLTGQ---ADLDGDDDDSYRYLLMPVRL 381 >gi|54292966|ref|YP_125381.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens] gi|53752798|emb|CAH14232.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens] Length = 367 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 23/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 62 D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSITV A DI+R L + A S + L V I S F L + P +PS Sbjct: 63 KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A++ +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSC--NNITQKKLLIPKKGVQELLRLLNCINDEQVLLTAGKSHIKLITNQFVFLS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP DK + ++C +L++A+ R+ I++ + +AV L L +L + Sbjct: 236 KLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +AIE+++ + I N YLL+++ + S + ++ + ++ SS+ I Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFS-----EGQIRLSMSNTESSILI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MPM+I Sbjct: 351 ESLIND---------NYQYIIMPMKI 367 >gi|270289891|ref|ZP_06196117.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4] gi|304385856|ref|ZP_07368200.1| DNA-directed DNA polymerase III beta subunit [Pediococcus acidilactici DSM 20284] gi|270281428|gb|EFA27260.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4] gi|304328360|gb|EFL95582.1| DNA-directed DNA polymerase III beta subunit [Pediococcus acidilactici DSM 20284] Length = 379 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 95/395 (24%), Positives = 175/395 (44%), Gaps = 29/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK T+ R+ ++ L R I K TIP+ + ++A L + S +I I I Sbjct: 1 MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIKAEADQLVLTGSNTDISIETTISVN 60 Query: 58 ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I ++A DIV+KL D E G + I+ G S F + Sbjct: 61 DPDAELDIEQTGDIVLTARFFSDIVKKLPDNK---MLVEVSDGFQTTITSGASEFKINGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + FP E + + L + V ++ T A++ +E R L GI F I E+ KL A Sbjct: 118 DANNFPHLPEVDSQTTITLQADVFSEMINETVIAVSNQESRPILTGIHFTI--ENNKLTA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ +++ + II+P K++ E+ R+L + ++ + +SE++ + Sbjct: 176 VATDSHRLSQRIINLPEAVKMPEDIIIPGKSLLELSRMLDEEIDTITLQISENQALFTFD 235 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS- 291 RL++G +P+ +IP + + L +++R S++S + R VKL+++ Sbjct: 236 ETLFYTRLLEGLYPDTSRLIPKESTTAMEFEAPELLASIERASLLSHAGRNNVVKLTINA 295 Query: 292 -SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + K +T D+P++G E + ++I FN YL + + + + Sbjct: 296 AAKKAIITGDSPEVGNVEEVVVTKDIQGEDLEISFNPDYLKDALRSFG-----HTAIKME 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + N ++ P+R Sbjct: 351 FTSPLRPFTLVPTED--------QENFIQLITPVR 377 >gi|284039727|ref|YP_003389657.1| DNA polymerase III subunit beta [Spirosoma linguale DSM 74] gi|283819020|gb|ADB40858.1| DNA polymerase III, beta subunit [Spirosoma linguale DSM 74] Length = 379 Score = 287 bits (736), Expect = 1e-75, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN------DGLLEIKASGPEIEIT 54 MK V S +L+ L H ++ +P+ + L + + G L + AS + +T Sbjct: 1 MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 IP + GSI + A LL D +R L + GTE I + + L Sbjct: 61 TQIPVEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTE--ILTDNGRYKLSGEN 118 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP S ++ S VL + + T FA +T+++R + G+ +N++ V Sbjct: 119 PIDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATF--V 176 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDGHRL + + SII+PRKA+ + L ++ V S++ Sbjct: 177 ATDGHRL-IRYRRTDLNASASTSIIIPRKALQLLKASLP-ENVPVTAEFSQANASFTFGP 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLID FP+Y+N IP +N + + T+L ++ R+ I ++ ++LSL ++ Sbjct: 235 TQLICRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKANS 294 Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L ++ ++ D +A E + Y M+I FN K + E++ N+S+ + + + Sbjct: 295 LTISAEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSAK-----MISLEMSAP 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N + + DK+ + ++MP+ + Sbjct: 350 NRAGLLIPADKE------ENEDILMLVMPVML 375 >gi|332665319|ref|YP_004448107.1| DNA polymerase III subunit beta [Haliscomenobacter hydrossis DSM 1100] gi|332334133|gb|AEE51234.1| DNA polymerase III, beta subunit [Haliscomenobacter hydrossis DSM 1100] Length = 372 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 178/387 (45%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V S++L+ L A I +P+ L D L I A+ + IT + Sbjct: 1 MKFSVSSSELLKQLQVAAGSIGSNPVLPILEDFLFSIADNKLTISATDLDTAITTQMDVM 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G+I V A +L D ++ L EN E I+ + L +FP+ Sbjct: 61 ADTDGTIAVPAKILLDTLKALPQQPITFSIDENTFAIE--ITSAYGKYRLSGENGQDFPA 118 Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E E + + S+ L V +T FA + +E+R + G++F ++ K+ VATD H Sbjct: 119 IPEPEAEDDTITIPSNALIQGVNKTLFATSNDELRLAMMGVYFQVDFS--KITMVATDAH 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +L S I+P+KA+ I +L + D VK+S +++ + + +S Sbjct: 177 KLVRYTFT-DLSSEVSTSFILPKKALNLIKNVLPAGDE-VKMSFNKANAFFSFGNTQISC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLID +P+Y VIP N L V+ + ++ R++I ++ V L++S L ++ Sbjct: 235 RLIDSRYPDYHAVIPVDNPFLLTVSRADFASSLKRIAIYANKTTNQVILNISPGNLIVSA 294 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A E ++ Y+ P+ I FN K+LLE+++ + S DEV L +S + Sbjct: 295 QDLDFSNEATEKLSCTYDGDPLMIGFNAKFLLEMLNVLES-----DEVRMELSTSTRAGI 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + ++MP+ + Sbjct: 350 LLPVEE------VPGEDILMLVMPVML 370 >gi|227496604|ref|ZP_03926882.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM 15434] gi|226833884|gb|EEH66267.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM 15434] Length = 377 Score = 287 bits (736), Expect = 2e-75, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 161/391 (41%), Gaps = 24/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + E + R + + +PV V L+A++ L + + E+ IPA Sbjct: 1 MKLRVDRDVLAEAVTWTARSVPARPPVPVLAGVRLEASNASLVLASFDYEVSAHCEIPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + VS LL DI + L + GT+V +S G S F L + ++P+ Sbjct: 61 VEEEGVVLVSGRLLADIAKALPSKPVDLEVE----GTKVTVSCGSSRFALAAMAAEDYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L V + A + +E L + ++ + +L +ATD +R Sbjct: 117 LPVMPSTAG-TVDAHDLAQAVAQVSIAASRDETLPLLTSVQMEVDGD--RLTLMATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSE------SRIHLNIE 233 LAV E+ +Q + + ++ + + ++ + L+S V V+L+E I Sbjct: 174 LAVREMTWASQDKTLSTHALLKARTLSDVAKSLTST-GDVTVALTEAGSTTSGLIGFEAG 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + L DG++P + P V L AV RVS+++ R + +S + Sbjct: 233 GRRTTSLLTDGDYPPVLRLFPEETSIHATVGREELMAAVRRVSLVA-DRSTPIHMSFTQG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + +A E + + + FN YLL+ + I V Sbjct: 292 SLALDAGAGEDAQASEQLVAHLEGEDISTAFNPGYLLDGLGAIH-----QPYVTLDFTHP 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + G D + ++ Y++MP+R Sbjct: 347 SKPAVLTGVDS---IGGEKDLSFRYLIMPIR 374 >gi|312977116|ref|ZP_07788865.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05] gi|310896444|gb|EFQ45509.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05] Length = 369 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 87/383 (22%), Positives = 164/383 (42%), Gaps = 26/383 (6%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS----VDVCG 65 ++E L + R I + TIP+ + L + L + S +I I IP + V+ G Sbjct: 3 LIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVNDDLNVESTG 62 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125 SI + A +IV+KL F E + + I +S F + + +P E Sbjct: 63 SIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDANNYPRLPEIP 119 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 SF ++ + ++ T FA + ++ R L G+ F + + K+ AVATD HRL+ Sbjct: 120 DAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVATDSHRLSQRT 177 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + + +I+P K++ E+ RI+ D VKV +++ I +LS RL+DG Sbjct: 178 IALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLSFYSRLLDGN 237 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLCMTVDNP 302 +P+ +IP + + + L A++R S+++ V L + + ++ + Sbjct: 238 YPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQSAKLSGKSA 297 Query: 303 DMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 ++G E ++ ++I FN Y+ + + V D V+ I Sbjct: 298 EIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTKPLRPFIINP 352 Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384 +D + ++ P+R Sbjct: 353 DKEDIE--------FVQLITPVR 367 >gi|315644301|ref|ZP_07897471.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453] gi|315280676|gb|EFU43965.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453] Length = 380 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 189/396 (47%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKI++ ++ + E + H + I + TIP+ + L + + AS +I I IP Sbjct: 1 MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPSE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GS+ + A +I++KL K+N + IS G + + Sbjct: 61 DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKDN---FQTFISSGATEIQMVG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 EFP E + + +LKN++++T F+++T E L G+ +++N+ +LK Sbjct: 118 LDPEEFPVLPNIEDSQTVSIPGDLLKNMIKQTVFSISTHETTPILTGVLWNLNDNELKF- 176 Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 ATD HRLA + Q ++++ K + E+ +I+ +++ V + ++++++ Sbjct: 177 -TATDRHRLATRSAQLEGTQDISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289 I+ + R++DG +P+ +IP S+ EL ++ L +++DR ++S + L + Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + ++GK E ++ + + P+ I FN KY+L+++ + S ++++ Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVES-----EQLMI 350 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ D Y+++P R Sbjct: 351 AFMGVMSPIVLKPLDDSKSQ---------YIILPYR 377 >gi|54295985|ref|YP_122354.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris] gi|53749770|emb|CAH11150.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris] Length = 367 Score = 287 bits (735), Expect = 2e-75, Method: Composition-based stats. Identities = 112/386 (29%), Positives = 199/386 (51%), Gaps = 23/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++T+++ D+L L +++K ++ + H LL+ +DGLL I A+ EIE++ + Sbjct: 3 ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62 Query: 62 D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A DI+R L + A S + L V I S F L + P +PS Sbjct: 63 NNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E + VL L++ THFAM+ +++R +LNG+ + + AVATDGHR Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +A++ +++P+K V E+LR+L+ D V ++ +S I L Sbjct: 178 MAISRYSC--NNIAQAKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP DK + ++CT L++A+ R+ I++ + +AV L L +L + Sbjct: 236 KLIEARFPPYTKAIPREQDKYIVIDCTTLKRALSRIVILAHEKSKAVLLHLQLGQLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +AIE+++ + I N YLL+++ + S + ++ + ++ SS+ I Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLSHFS-----EGQIRLSMSNTESSILI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D N Y++MPM+I Sbjct: 351 ESLVND---------NYQYIIMPMKI 367 >gi|300857419|ref|YP_003782402.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis FRC41] gi|300684873|gb|ADK27795.1| DNA polymerase III beta subunit [Corynebacterium pseudotuberculosis FRC41] gi|302205159|gb|ADL09501.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis C231] gi|302329717|gb|ADL19911.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis 1002] gi|308275400|gb|ADO25299.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis I19] Length = 395 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 93/399 (23%), Positives = 165/399 (41%), Gaps = 29/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 VE+ D+ + R + K T PV V++ A+D LE EI I A V Sbjct: 8 FRVEKEDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEISTKVRISADVS 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL DI+ L F + G++ + G S F L P E+P Sbjct: 68 QPGRIAVAGKLLSDIIGTLPAKPVEIFVE----GSQALVVCGSSRFELPLIPLDEYPILP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + + V + A ++ L GI I+ ED+ L ATD RLA Sbjct: 124 KLPAATGAIDP-KLFADAVLQVAAAAGKDDTLPMLTGIHMEIDGEDVTL--TATDRFRLA 180 Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILS-SKDSSVKVSL-------SESRIHLNIE 233 + + +++P K + + R L + V++++ SE ++I+ Sbjct: 181 LRRFQWTPAVPDAKADLLIPAKNLSDNARSLDQNSTDPVEIAVGAGESIGSEGLFGIHID 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S + R++D +FPN ++P + V + L A+ RV++++ R ++L S + Sbjct: 241 SRQTTTRMLDADFPNVNPLLPKVHKSMASVEISALADAIRRVALVA-ERNAQIRLQFSKN 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ D G A ES+ Y I FN YL + + I ++ VVF Sbjct: 300 EVILSAGGSDAGHAEESVPCAYTGDEDFLIAFNSGYLRDGLSVIKTN-----RVVFGFTE 354 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ + + Y+LMP+R+ Sbjct: 355 PSRPAIMIPEPEELPEADSDGTFPTPNTDFTYLLMPVRL 393 >gi|288817885|ref|YP_003432232.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6] gi|288787284|dbj|BAI69031.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6] gi|308751484|gb|ADO44967.1| DNA polymerase III, beta subunit [Hydrogenobacter thermophilus TK-6] Length = 361 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 195/385 (50%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V+R + L+ L A E+K+ +PV + LLQA L +KA+ E +T ++ A Sbjct: 1 MRFSVDREEFLDALTKAKSATEKKSALPVLNNFLLQAQKDRLIVKATDLENFLTFSVRAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V+A L +++ + + E+ +++I+ G S F L + +FP Sbjct: 61 VYEEGVVAVNADKLTSVIKAIPSATLQAQLLED----KLSITGGRSKFNLTALEAEDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + +++T +A++ E+ RY L G++ H E K V +DGHR Sbjct: 117 FPEVKVSSQI--PAVDFLKAIDKTEYAISKEDTRYALQGMYIH--EHKGKTHFVGSDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +++PRK++ I +L + + S HL E +S+R Sbjct: 173 LALYFTP----SPFSLELLIPRKSLKVIEGLLKDYIGEISIGKDGSFAHLQGEDFQLSIR 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GE+P+Y +VIP S + E+ +N + A+ R+S ++ VK+SL + + Sbjct: 229 LLEGEYPDYLSVIPESFNIEVLINKSEFLSALKRLSAIAESSAFPVKISLQDNLAVFEIT 288 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 P+ G+ + +++ Y++ PM++ FN KYL+E +++ +++V ++ +S++ + Sbjct: 289 EPEYGEGRDEVDIEYSQEPMELGFNGKYLIEALESFDTEKVW-----LKIVDPDSAIVLD 343 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 +DK+S ++MPMRI Sbjct: 344 SEDKESDP-------YMCLVMPMRI 361 >gi|19551252|ref|NP_599254.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC 13032] gi|62388895|ref|YP_224297.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC 13032] gi|145294045|ref|YP_001136866.1| DNA polymerase III subunit beta [Corynebacterium glutamicum R] gi|21322767|dbj|BAB97396.1| DNA polymerase III beta subunit [Corynebacterium glutamicum ATCC 13032] gi|41324228|emb|CAF18568.1| DNA POLYMERASE III, BETA SUBUNIT [Corynebacterium glutamicum ATCC 13032] gi|140843965|dbj|BAF52964.1| hypothetical protein [Corynebacterium glutamicum R] Length = 394 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 161/398 (40%), Gaps = 28/398 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V R D++ + R + K T PV +L+ A+D LE+ ++ + A V Sbjct: 8 FRVAREDLVTAVAWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYDVSTRVRLSAEVS 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL +I L + G++ ++ G S F L P ++P Sbjct: 68 QPGRIAVAGKLLSEITGSLPNKPVDFRID----GSKAFVTCGSSRFELPLIPLDDYPMLP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + + + + + V + A ++ L G+ I + L ATD RLA Sbjct: 124 KLPAG-TGSINAKLFTEAVSQVASAAGKDDSLPMLTGVSMEIVGNQINL--AATDRFRLA 180 Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + + A + +++P + + + R L S + S+ +++ E ++ + Sbjct: 181 LRTFEWEANDPELNVKLLIPARTLLDNARSLDSGLNDSIDIAVGTGDQVGREGLFGVHTD 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + RL+D +FPN ++P + V L A+ RVS+++ R + L S Sbjct: 241 NRETTTRLLDADFPNIAPLLPKEHTAIASVEIAPLVDAIRRVSLVA-ERNAQIVLHFSEG 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ +T + G A E++ + + I FN YL + + V VF Sbjct: 300 QVILTAGATEAGHAEETLPCAFTGKELTIAFNPGYLKDGLSV-----VPTSRAVFGFTEP 354 Query: 354 NSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ + +N Y+LMP+R+ Sbjct: 355 SRPAIMIPEPEEMPSANENGIFQTPDTYFTYLLMPVRL 392 >gi|224535481|ref|ZP_03676020.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus DSM 14838] gi|224522895|gb|EEF92000.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus DSM 14838] Length = 374 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 101/367 (27%), Positives = 177/367 (48%), Gaps = 13/367 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L I S E + ++ Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELKDGTLSITVSDSETTMVTSVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A + D ++++ + F+ N E+ + + + + L EFP Sbjct: 61 ESDADGRFAVAAKTILDALKEIPEQP--LSFEVNTNSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ +SVL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDASVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K I +L + V + E +E M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRMQLVGALRRVSIFSSQASSLIKLRMQPNQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y+ PM I F +L++I++NI++ DEV+ L + + Sbjct: 296 AQDIDFSTSAEETLACQYDGNPMSIGFKSTFLIDILNNIAA-----DEVIIELADPSRAG 350 Query: 358 FIRGKDK 364 I ++ Sbjct: 351 VIIPVEQ 357 >gi|296435593|gb|ADH17767.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9768] gi|296437453|gb|ADH19614.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11074] gi|297139952|gb|ADH96710.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9301] Length = 366 Score = 287 bits (734), Expect = 2e-75, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R+++ L+ ++ + IPV HVL+++ + L A+ + + A Sbjct: 1 MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFMATDLTVSTRCVVKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+T+ + + ++R+L + + G I+ G S F L S + +FP Sbjct: 61 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L S LK++ +RT FA++ EE RY L G+ I + + V TDG R Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + I+P KAV EI+R +SS+D + L +++I + + + + Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK S S +L +T + Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|238915978|ref|YP_002929495.1| DNA polymerase [Eubacterium eligens ATCC 27750] gi|238871338|gb|ACR71048.1| DNA polymerase [Eubacterium eligens ATCC 27750] Length = 367 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 171/385 (44%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + +G + + + T+ + +L+ A ++ + E+ I + Sbjct: 1 MKLVFTKSNLNKAVGIVMKAVPTRTTMNILECILIDATTNEIKFTGNDMELGIETIVEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + + A L +IVRKL D N I+ S F + +F Sbjct: 61 IIEKGKVAIDAKLFSEIVRKLPDNDITLTTDSN---NNALITCEKSKFNIAGKSGDDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L+ LK ++ +T F++A + + G F +NE LK+ V DGHR Sbjct: 118 LPAIIKDKMITLSQFQLKEVINQTIFSIAINDNNKMMTGELFEVNEGTLKV--VGLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ + + + + +++P K + EI +IL+ +S V + + + + + + Sbjct: 176 IAIRNIKLEGRADDVR-VVIPGKTLQEISKILNADAESFVNIYFTNNHVLFEFDQTHVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298 RLI+G++ ++ + ++ +N ++DR +++ + + +++ + L + Sbjct: 235 RLIEGDYFKISQMLSNDYETKVSINKKEFLDSIDRANLLIREGDKKPIIINILNGLLQVN 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++ +G E +++ + I FN K+L++ + I D+ V L + S F Sbjct: 295 VNSA-IGALNEDIDIDKEGKDIMIGFNPKFLMDALRVID-----DENVTIYLVNHKSPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR K++ N Y+++P+ Sbjct: 349 IRDKEE----------NYIYLILPV 363 >gi|225386352|ref|ZP_03756116.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme DSM 15981] gi|225047534|gb|EEG57780.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme DSM 15981] Length = 373 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 177/385 (45%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ ++ + + + K T+ + +L+ A+ +++ + E+ I + Sbjct: 1 MKLRFQKDALVNGINIVLKAVPSKTTMSILECILIDASGSEIKLTGNDMELGIETTVAGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I R++ + E++ I +S F +Q EF Sbjct: 61 ILEHGKIALDAKLFSEITRRVSSESSAVVSIESDERFNTTIRCENSVFNIQGRDGEEFAY 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++++T F+++ + ++G F +NE +L V+ DGHR Sbjct: 121 LPYIERDKYICLSQFTLKEVIQQTIFSISPNDSNKMMSGELFEVNEN--QLQVVSLDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + + +IVP K +GE+ +IL+ + V + S + I +S + Sbjct: 179 ISIRKVRLKDHYDDI-KVIVPGKTLGEVSKILNGDNEKEVLIYFSANHILFEFDSTIVVS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++ VN ++R +I+ + + ++++ + + + Sbjct: 238 RLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATILIRENDKKPLIINITDNSMQLK 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + ++ N + I FN K+L++ + I D+E+ + + S F Sbjct: 298 LNSS-FGSMNADLLIHKNGKDIMIGFNPKFLIDALRAID-----DEEINLYMMNPKSPCF 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ N Y+++P+ Sbjct: 352 I----------KDDEENYIYLILPV 366 >gi|329955850|ref|ZP_08296653.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056] gi|328525230|gb|EGF52280.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056] Length = 374 Score = 287 bits (734), Expect = 3e-75, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + N L E+ + + + + L EFP Sbjct: 61 ESDTDGRFAVTAKTLLDALKEIPEQPLTFDINTNSL--EITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + V + E + +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENRIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y PM I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQTCQYTGNPMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPVEQEENED 362 >gi|258510022|ref|YP_003183456.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257476748|gb|ACV57067.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 374 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 91/374 (24%), Positives = 169/374 (45%), Gaps = 20/374 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ + L + + + V +L++ ++ + A E+ I +P Sbjct: 1 MEFSLQKQALSNALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V G+I + A DIVRKL D +I + TE IS F+L Sbjct: 61 EETGLRVHQTGAIVLPARYFGDIVRKLPD-TEIHMRVDANYMTE--ISAQSVEFHLHGID 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP S ++ +S L L+E T FA AT E+R L G+ I + L + Sbjct: 118 AEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGV--SITSDPTHLTFI 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG RLA V +++P K++ E+ +IL ++SV++ L+ S I Sbjct: 176 ATDGLRLAQHRVP--QADLPERQVVIPAKSLSELSKILPEDETSVEMVLTPSHGLFVIGP 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293 RL++G +P+ +IP S ++ ++ A+DR ++++ + V+L ++ D Sbjct: 234 TRFYTRLLEGTYPDTSRLIPRSARTQVVLDGDAFLHAIDRAALIARDKDNHMVRLEVTGD 293 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L +T +P++G E+++ + I FN +Y++E + + + E+ R + Sbjct: 294 TLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAA-----EIAIRFNG 348 Query: 353 SNSSVFIRGKDKDS 366 +N + I S Sbjct: 349 ANQAFVIERSGDPS 362 >gi|163781756|ref|ZP_02176756.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] gi|159882976|gb|EDP76480.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1] Length = 363 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 98/386 (25%), Positives = 196/386 (50%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R + E L A E+K+ +P+ + LL A L ++A+ E + ++ A Sbjct: 1 MKLQIDREEFEEALKKAREATEKKSALPILTNFLLTAEGDRLVVRATDLENYLVLSVKAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ GS+ VS+ L DIVR L + A + E G ++ I+ G S F L + +FP Sbjct: 61 IEEGGSVCVSSRSLSDIVRNL-NSALLYIETE---GEKLVITGGRSKFKLPTVSPEDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ +++ + +T +A+A EE R L G++ + ++ V +DGHR Sbjct: 117 FPEVVEGEE-AISGNLILKGIAKTEYAIAKEEARISLQGMYM--KGHEGRVHFVGSDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 L++ + + +++PRK++ I R+L+ +D V S S + E + V Sbjct: 174 LSL----FEPEGSFSYELLIPRKSLKVIQRLLTGIEDVRVAKSEDGSFAYFTSEEWKLIV 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL++GE+P+Y VIP E+ ++ ++A+ R+S ++ ++ VK++L+ + + Sbjct: 230 RLLEGEYPDYLAVIPHEFSAEVLLDVEETKRALKRLSGLAEGKVFPVKITLNDNLAVLEF 289 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G+ E ++V Y +I FN +Y+LE ++ + S++ F+ + +++ + Sbjct: 290 MDPEFGEGREELDVDYVGETFEIGFNGRYILEALEALDSEK-----AWFKFTTPDTAALL 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 D +S ++MPMR+ Sbjct: 345 ESDDYESDP-------YRCIIMPMRV 363 >gi|194476875|ref|YP_002049054.1| DNA polymerase III subunit beta [Paulinella chromatophora] gi|171191882|gb|ACB42844.1| DNA polymerase III subunit beta [Paulinella chromatophora] Length = 394 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 86/408 (21%), Positives = 179/408 (43%), Gaps = 39/408 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+ ++++ L R + + T P+ +VLL A GLL + + I +I Sbjct: 1 MKLVCSQTELNTSLQLVSRAVATRPTHPILANVLLTANAETGLLSLTGFDLNLGIQISIS 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ASV+ G+IT+ + LL +IV +L + I+ + + + ++ + ++S P ++F Sbjct: 61 ASVETSGAITLPSRLLGEIVSRLSNEGPIT-ISDMKGQERIELTSISGTYQMRSMPAADF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P L + L + T FA + +E + L G+ +L+ ATDG Sbjct: 120 PDLPLIVSGIPVRLEAEALIRGLRGTIFATSNDEAKQVLTGVHLCFTNHELE--CAATDG 177 Query: 179 HRLAV-----------------AEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSV 219 HRLAV + + ++ +P +++ E+ R+LS +V Sbjct: 178 HRLAVLRLANAVTEDLLIKAEEIKETEEEDGIEDFAVTLPARSLKELERLLSGHPTKEAV 237 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + + + + ++ R +DG +P Y+ +IP + + + L A++RV++++ Sbjct: 238 SLFYNRGQAVFLWANQILTSRTLDGIYPAYKGLIPDHFTRSIALERKALISALERVAVLA 297 Query: 280 SVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 V+L +LC++ D ++G E M ++I FN +Y+L+ + + Sbjct: 298 GQHNNVVRLEGDPMTRQLCISADAQEIGSGSEEMLAIITGGCIEIAFNVRYMLDGLKAM- 356 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 D+ + +SSN+ + + + Y++MP+++ Sbjct: 357 ----TDERIEILCNSSNTPAILTPQGD--------MHSFMYLIMPIQV 392 >gi|163759228|ref|ZP_02166314.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica DFL-43] gi|162283632|gb|EDQ33917.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica DFL-43] Length = 385 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 124/394 (31%), Positives = 214/394 (54%), Gaps = 26/394 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEI--EITGAIPA 59 +T R+ +L + A +ER+NTIPV ++LL+ D L + + ++ + + A Sbjct: 7 LTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGLRVSGTDLDVMTTVATGLDA 66 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +T+ AHLL+DI+RKL D A++S + ++ ++ G S F LQ+ P +++P Sbjct: 67 EPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDG--SGQMTLTSGRSRFNLQTLPGADWP 124 Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 +E+ +FE+ ++ + FA++TEE RYYLNG++ H + +L VATDG Sbjct: 125 RLQEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMHAIDN--RLVTVATDG 182 Query: 179 HRLAVAEVD----IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK--VSLSESRIHLNI 232 HRLA A ++ MP II+PRK VG + + L++ +++SE+ I + Sbjct: 183 HRLARAVYSAAVGVMPAADAMPGIIIPRKTVGLVAKALAAAAKDATLAIAVSENMISFEL 242 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + ++ +LIDG FP+Y+ VIP +N R + L QA +RVSI+SS R +AVK++ Sbjct: 243 GATRIASKLIDGTFPDYERVIPIANPNSWRFDVAALLQATERVSIISSERGRAVKMAWGR 302 Query: 293 DKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + +TV NPD G+ + ++V + ++I FN KYL +++ ++S V L+ Sbjct: 303 ESIDLTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHMSKSGSV------HLN 356 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D D+++ +VLMPMR+ Sbjct: 357 TGGDPARFEPVHAD-----DDEIAMTFVLMPMRV 385 >gi|284051274|ref|ZP_06381484.1| DNA polymerase III subunit beta [Arthrospira platensis str. Paraca] gi|291566285|dbj|BAI88557.1| DNA polymerase III beta subunit [Arthrospira platensis NIES-39] Length = 393 Score = 286 bits (733), Expect = 3e-75, Method: Composition-based stats. Identities = 93/409 (22%), Positives = 198/409 (48%), Gaps = 42/409 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M++ VE+ + L R I + + P+ ++L++A+ L + A + I + P Sbjct: 1 MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINASFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V G +T+ A LL DIV +L G + + V ++ + ++ E+ Sbjct: 61 AQVQQGGVLTLPAKLLNDIVSRLPGGDI--EVNDEDTEAVVTLTSSSGRYQVRGMVAEEY 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + +S +LA+ L ++ T FA + +E + L G+ + ++ LC +TDG Sbjct: 119 PELPSVQGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFASTDG 176 Query: 179 HRLAVAEV----DIVAQIAKMPSIIVPRKAVGEILRILSSKDS---------------SV 219 HRLAV +V D ++ + I +P +A+ E+ R++ S +S V Sbjct: 177 HRLAVVKVENVRDPNSEEQEDLEITIPARALREVERMIVSANSGRHSTATEEEATTPLMV 236 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 + ++++ ++ + ++ R ++G +P Y+ +IP ++ V L A++R+ +++ Sbjct: 237 TLGFDDTQVVFDVGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLGALERIGVLA 296 Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNI 336 S + VK + + ++ ++V+ D+G A+ESM + P ++ FN KYL++ + + Sbjct: 297 SQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLKVL 356 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S E+ +L+++++ V I N + Y++MP+++ Sbjct: 357 NSS-----EIQIQLNAASTPVII---------NPLGGLKMTYLVMPIQL 391 >gi|332296671|ref|YP_004438593.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM 12168] gi|332179774|gb|AEE15462.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM 12168] Length = 367 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 101/385 (26%), Positives = 190/385 (49%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T +R +++ + A II KN + + +VL A + L IKA+ ++ IP Sbjct: 1 MRFTFDRDAMVKEIAIAQEIISTKNALSILSNVLFIAENNTLAIKATDIKVNFETKIPVV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ T+ I+ L G +I F +E+ T I F L+S +FP Sbjct: 61 IEEEGTTTIFCDKFMSILASLPPG-EIEFIQEDIKVTIKPI-SKKVKFQLKSMASDKFPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F++ + K ++ +T FA++ +E RY++NG+FF +++L L V+TDG R Sbjct: 119 FSSAENVPYFDVPADQFKEMITQTIFAVSDDETRYFMNGVFFEKKDDNLNL--VSTDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + I PS+IVP K + +L+ +S + + +++ + I++ + S Sbjct: 177 LAFSSKALCQGITDFPSVIVPPKVLTAVLK-RASSEGMISLAIVDKMIYIKFGNYHFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G+FPNYQ VIP + + ++L A+ RV+++ + + V L+ L +T Sbjct: 236 LLEGQFPNYQRVIPETQAHSFELQKSDLADALKRVALLVDQKARRVYFELNPGTLTITSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E + Y+ + I NY Y+ E + ++ D + F +V ++ Sbjct: 296 ESDIGVAKEEIPCQYDGETVTIAMNYLYIDEPMKVMNC-----DRIKFEFTEPMRAVTLK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + F+++MPM++ Sbjct: 351 PV---------PESDYFHIIMPMQM 366 >gi|325475138|gb|EGC78323.1| DNA polymerase III [Treponema denticola F0402] Length = 367 Score = 286 bits (733), Expect = 4e-75, Method: Composition-based stats. Identities = 102/384 (26%), Positives = 193/384 (50%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ +R +L+ + A II K + + +VLL DG L IKA+ ++ IP + Sbjct: 1 MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV I+ L G K+ +L + + + F L++ PE++FP+ Sbjct: 61 IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVK--KAKFQLKTIPENDFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F + + K ++ +T F+++ +E RY++NG++ E+ L VATDG R Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIENKED--TLYFVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + I + +IVP K + I + +S + +++V + E I N S S Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILNIINK-RASDEGNIEVGIGEKNIFFNFNSYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ VIP + + V+ T +A+ RVS++ ++ + + L++ L ++ Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G A E + Y+ + + NY Y+ + + I+S D + + ++ ++ Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITS-----DRIKVEFTEAMKAITLK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + F+++MPM+ Sbjct: 351 PEPEE---------DFFHIIMPMQ 365 >gi|218291095|ref|ZP_03495118.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218238980|gb|EED06187.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 374 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 90/374 (24%), Positives = 167/374 (44%), Gaps = 20/374 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++ + L + + + V +L++ ++ + A E+ I +P Sbjct: 1 MEFSLQKQALANALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V G+I + A DIVRKL D +I + TE IS F+L Sbjct: 61 EETGLRVHKTGAIVLPARYFGDIVRKLPD-TEIHMRVDANYMTE--ISAQSVEFHLHGID 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP S ++ +S L L+E T FA AT E+R L G+ I + L + Sbjct: 118 AEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGV--SITSDPTHLTFI 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG RLA V +++P K++ E+ +IL ++ V++ L+ S I Sbjct: 176 ATDGLRLAQHRVP--QADLPERQVVIPAKSLSELSKILPEDETPVEMVLTPSHGLFVIGP 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293 RL++G +P+ +IP S ++ + A+DR ++++ + V+L ++ D Sbjct: 234 TRFYTRLLEGTYPDTSRLIPRSARTQVVLEGDAFLHAIDRAALIARDKDNHMVRLEVTGD 293 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L +T +P++G E+++ + I FN +Y++E + + + E+ R + Sbjct: 294 TLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAA-----EIAIRFNG 348 Query: 353 SNSSVFIRGKDKDS 366 +N + I S Sbjct: 349 ANQAFVIERSGDPS 362 >gi|332885445|gb|EGK05694.1| DNA polymerase III, beta subunit [Dysgonomonas mossii DSM 22836] Length = 374 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 182/372 (48%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ V + +L L ++I KNT+P+ LL+ L + A+ E + ++ Sbjct: 1 MRFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLSLTAADSETRLVTSLEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D +++L D + L T + +G NF ++P Sbjct: 61 EADGNGKFAVNAKNLLDPLKELPDQPLTFEINSDNLETFIFFHNGKYNFI--GQNGEDYP 118 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 K+ E S + VL + + RT FA A +E+R +NG++F I+ EDL VA+DG Sbjct: 119 QPKQLKETAVSLTIEPQVLFSGINRTLFASADDELRPVMNGVYFDISTEDLTF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ A+ S I+P+K + IL + +V++ E+ ++ + S +M+ Sbjct: 177 HKL-VRCKTLSAKGAERASFILPKKPANLLRAILPKESETVEIKFDENNAYIKMSSYTMT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R I+G +PNY +VIP +N ++ ++ + A+ RVS+ S+ V+L LS + ++ Sbjct: 236 CRFIEGRYPNYNSVIPQNNPNKVILDRLSFLNALKRVSVFSNQASNLVRLQLSDKNIIVS 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+++ Y PM I F +L++I++NI S + + L + + Sbjct: 296 AQDIDFSTAAEETISCDYTGTPMSIGFKSSFLIDILNNIPSSD-----ISLELSDPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I + + + Sbjct: 351 LIIPAENEENED 362 >gi|189501610|ref|YP_001957327.1| DNA polymerase III subunit beta [Candidatus Amoebophilus asiaticus 5a2] gi|189497051|gb|ACE05598.1| DNA polymerase III, beta subunit [Candidatus Amoebophilus asiaticus 5a2] Length = 372 Score = 286 bits (732), Expect = 4e-75, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 182/387 (47%), Gaps = 18/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ S + + L + IP+ + L + +G L+I AS + I + Sbjct: 1 MKFSISSSTLYKHLVALYGAVVSNPLIPILENFLFEITNGKLKITASDLQTSIITELELD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V S+ V A +L D ++ L + F +E ++I + L ++FP Sbjct: 61 VKGETSVAVPARILLDTLKNLPEQPI--SFYIDESVYSISIKSDTGQYNLAGENATDFPQ 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S +L + +LK +++T A + +E++ +NG++ + E+ VATD HR Sbjct: 119 IPEVAAKTSIQLPADILKRAIQQTIIATSHDELKPAINGMYMNFKEDA--FTFVATDIHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + + P I+PRK + + +L + V++S + +H I ++ M R Sbjct: 177 LIRYTRNNITAAEQAP-FILPRKTLMLLNGLLPTDKQEVEISFGSNNVHFKIANVRMVSR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+NVIP +N +LR+N L ++ R+ I ++ VK +L L + + Sbjct: 236 LIDERYPDYENVIPKNNPHKLRINRMALLTSLKRIIIYTNKITHQVKFTLGEQNLEILAE 295 Query: 301 NPDM-GKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + KA E ++ Y ++I FN K L+E+++N+ + DEV F N + Sbjct: 296 DFNFDNKAKEQLSCEYVGDASLEIGFNAKSLIEMLNNLQA-----DEVNFHFSQPNKAAV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D++ + ++MP+ + Sbjct: 351 IIPNDQE------EGEDILLLIMPITL 371 >gi|323357955|ref|YP_004224351.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum StLB037] gi|323274326|dbj|BAJ74471.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum StLB037] Length = 383 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 167/392 (42%), Gaps = 24/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R E + +++ ++N P+ VL++AN+ L + A E I A+ Sbjct: 1 MKFHVNRDVFSEAVSFVVKLLPQRNPQPILAGVLIEANEQGLTLAAFDYEASARTTIEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+I V LL DI +L + E+ + ++ G + F L S P E+P+ Sbjct: 61 VDEPGTILVHGRLLSDIASRLPNAPIQIAVDEDGG---ILLTCGSARFTLASMPVQEYPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + FA + +++ L G+ ++ +L VATD +R Sbjct: 118 IPEVTGESGLV-PADEFATAIAQVAFAASRDDVTPVLTGVQLEVSGT--RLSLVATDRYR 174 Query: 181 LAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIE 233 +A+ E+ + S +VP + + E+ + + + ++ S S I Sbjct: 175 VALREIPWDGGQAASDETTSALVPARTLQEVGKTFAHG-GDISIAFSGSGDREIIAFTAA 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +++ LI G FP + + P + VN L +AV RV+++ R ++ + +D Sbjct: 234 NKTVTSLLIKGNFPPVRRLFPEQTEHHSVVNTAELAEAVRRVALVL-DRSAPLRFTFGAD 292 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + M + +A E+++ + + N +YLLE + + S+ + F + Sbjct: 293 GVSMDASGTEQARATETVDATLVGDEVTLGLNPQYLLESLGAVRSEFT---RITFTSSDN 349 Query: 354 N---SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 S V + + + +K + Y+L P Sbjct: 350 ANKLSPVLVTPQ---TSVDKGGEGTFKYLLQP 378 >gi|300172304|ref|YP_003771469.1| DNA polymerase III subunit beta [Leuconostoc gasicomitatum LMG 18811] gi|299886682|emb|CBL90650.1| DNA polymerase III, beta subunit [Leuconostoc gasicomitatum LMG 18811] Length = 377 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 84/394 (21%), Positives = 171/394 (43%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++ L R I + TIP+ ++ + L + S +I I I S Sbjct: 1 MQFSINRQAFIKALNDVSRAISSRTTIPILTNIKIVLTQEELILTGSNSDISIETRIDQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV+ L G +I+ G S+F + Sbjct: 61 DTGAQLIIKQPGGITLLATFFSNIVKNLPADDMTLSVD----GVRASITSGASDFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI +N D+K A Sbjct: 117 DVHNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + A +I+P K+ E+ +L +D V++ L+ ++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGTDAHVKADVIMPAKSFNELQSLLEGQD-RVEIKLAANQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + + RL++G +P +IP + +L + + L A++R S++S R V+L+L Sbjct: 234 GNTTFYSRLLEGNYPETDRLIPTESTTQLTIEASALLGAINRASLLSHESRNNVVQLTLK 293 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + + + ++G+ E + ++I FN Y+ + + + V + Sbjct: 294 NGVVTLIGTSQEVGRVQEELVTKSVEGEDLEISFNPDYVRDALRVFNGKSVD-----IKF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + ++ P+R Sbjct: 349 TSNLRPFTLTPAGETDDKQ-------LQLITPVR 375 >gi|168335259|ref|ZP_02693360.1| DNA polymerase III subunit beta [Epulopiscium sp. 'N.t. morphotype B'] Length = 390 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 188/387 (48%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + + + + ++T P+ +L+ A + L + + E+ I I Sbjct: 23 MKFICNQNILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMGIEKTIEGE 82 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I++K+ G I NE T++ I+ G S F LQ+ S FP+ Sbjct: 83 ILENGKIAIDAKLFSEIIKKMPQG-DIKMATINE--TQITITSGKSRFTLQTLDTSHFPT 139 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S ++ LKNL+++T F++A EE R L G F + E+ +L VA DG Sbjct: 140 LPDVSLKQSLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEV--ENGQLSLVAIDGFX 197 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A + + + + +I P K + EI +ILS++ + V + E+ I N+ ++ Sbjct: 198 IAFRTISLNNKNLSIEKVI-PAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVS 256 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 L++GEF Y+++ + ++ VN +++R ++MS ++ +++ D L +T Sbjct: 257 XLLEGEFLRYKDIFSNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIIT 316 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D+G ++E +++ P+ I FN +YL++ + NI DDE+ S + Sbjct: 317 S-NTDIGNSLEEIDIILTGMPLKIAFNPRYLIDALKNIE-----DDEICINFLSKTAPAV 370 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D Y+++P+R+ Sbjct: 371 IMPINSD---------KYRYLVLPIRV 388 >gi|268628357|gb|ACZ13577.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628359|gb|ACZ13578.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628361|gb|ACZ13579.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628363|gb|ACZ13580.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] gi|268628365|gb|ACZ13581.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. kayaii] Length = 276 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|170016360|ref|YP_001727279.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20] gi|169803217|gb|ACA81835.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20] Length = 377 Score = 286 bits (732), Expect = 5e-75, Method: Composition-based stats. Identities = 89/394 (22%), Positives = 171/394 (43%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++ L R I + TIP+ ++ + ++ L + S +I I I S Sbjct: 1 MQFSINRQAFIKSLNDVARAISSRTTIPILTNIKIVLSEDELILTGSNSDISIETRIEQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV+ L + G NI+ G S F + Sbjct: 61 DTTAQLVIKEKGGITLPATFFANIVKNLPADDLMLAVD----GLRANITSGASAFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI +N D+K A Sbjct: 117 DVRNYPQLPEMDDVQSLSVSAAQLIDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + A +I+P K+ E+ +L +D V + LS ++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGTEAHVSADVIIPAKSFNELQSLLEGQD-RVDIKLSANQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + RL++G +P +IP + EL ++ L A++R S++S R V+L+L Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTELTMDAGALLGAINRASLLSHESRNNVVQLTLK 293 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + +T + ++G+ E + ++I FN Y+ + + S V + Sbjct: 294 AGVATLTGTSQEVGQVQEELVTKSVAGEDLEISFNPDYVRDALRVFSGKPVD-----VKF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + ++ P+R Sbjct: 349 TSNLRPFTLTPAGETDNKQ-------LQLITPVR 375 >gi|153808234|ref|ZP_01960902.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185] gi|149129137|gb|EDM20353.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185] Length = 374 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 175/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPEQP--LTFLINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + VL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + SV + E ++S M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGSVTIEFDERNAVFMLDSYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPVEQEENED 362 >gi|261368843|ref|ZP_05981726.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM 15176] gi|282569113|gb|EFB74648.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM 15176] Length = 369 Score = 285 bits (731), Expect = 5e-75, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 183/386 (47%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK E+S + + R I ++ IPV + L+A L + E+ IT I + Sbjct: 1 MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIECN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V V G + A LL +V ++ G + + IS G + F + + S++PS Sbjct: 61 VLVPGETVLEAKLLLSMVSRMPAGDVRIELTDE---GQAIISGGVAEFEIPALNASDYPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +S+++ L+E+T +A++ ++ + G F I L + VA DG+R Sbjct: 118 LPVTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVIEPGSLTI--VALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + D+ + + II+P K + E+L+I+ D VK+ + + ++ R Sbjct: 176 LAIIQRDV--ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 LI+G+F NY++VIP N + V+C ++R S++ + R +++S + DK+ + Sbjct: 234 LIEGDFLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVRC 293 Query: 300 DNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 P +GK ++ V P++I FN +YLL+ + + +V ++ S V Sbjct: 294 QTP-LGKVVDEFPPVAMTGDPVEIGFNNRYLLDAMRYSKC-----ERMVLEINGPLSPVK 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +D + Y+++P+R Sbjct: 348 ILPED---------GKDFIYLVLPVR 364 >gi|298246028|ref|ZP_06969834.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM 44963] gi|297553509|gb|EFH87374.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM 44963] Length = 379 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 95/394 (24%), Positives = 173/394 (43%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ D+ L + ++T+P+ ++LL + G L++ A+ EI I I A Sbjct: 1 MKIICKQQDLSRGLSTVSHAVSSRSTLPILANILLTTDHGRLKLSATNLEIGINCWIDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GS TV A + D+V L ++S E+ ++I SN ++ SEFP Sbjct: 61 VQEEGSTTVPAKTISDLVSSLRPSQVELSVADESHT---MSIKGQGSNATIKGMDPSEFP 117 Query: 120 STKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E L + LK ++E FA A ++ R L G+ E KL A D Sbjct: 118 LIPSAEGSETPIALDAHQLKEMIEYVAFAAADDDTRPVLTGVHVETTNE--KLTFAAADA 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSM 237 RLAV + +I++P + + E+ RIL ++ S + V+ + S++ + +++ + Sbjct: 176 FRLAVMSAPMPGGDLLADTILIPARTLTELARILPNEGSVQMIVTPNRSQVLFHTDNVDL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--- 294 RLI+G FPN++ +IP + V AV V+ + ++ ++S Sbjct: 236 VSRLIEGTFPNFRGIIPKEHTTRAVVETKEFSAAVKTVTPFARDSSNIARVKVNSGSEDG 295 Query: 295 -----LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L + D+G + ++N + +I FN KYL +++ + + EV Sbjct: 296 NETGTLTIEATAEDIGSNVSTINAAVDGPEQEIIFNVKYLSDVLGVVGT-----PEVALE 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S+ ++ + Y++MPM Sbjct: 351 ITSAARPGVVKPVGP---------ADYTYIIMPM 375 >gi|206900545|ref|YP_002251261.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12] gi|206739648|gb|ACI18706.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12] Length = 367 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 184/389 (47%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ D+ + L + K TIP+ +V ++A + L ++ + E+ + ++P Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEVGLALSMPVI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + A L D++ KL + ++ I G S+ +Q EFP Sbjct: 61 VEEPGEVCLPASLFIDVIGKLPE---VTLEVYVNERNRAIIHAGYSDIEIQGESPEEFPK 117 Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y L + +++T FA A +EI+ L G+ F +D KL VA DGH Sbjct: 118 VEVGNITEYHASLDRILFAKAIKQTIFAAAEDEIKQVLTGVLFE--GKDGKLNMVAVDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA+ ++I PSIIVP K++ E +I++ + V ++ ++++ N + Sbjct: 176 RLALKTLEIDK---DFPSIIVPAKSLKEWQKIITKALEDRVNIAALDNQVVFNCGEIYFI 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 RL+ G+FP Y +IP + N + ++R+ + + + VK+SLSS+++ + Sbjct: 233 SRLLQGQFPAYDKIIPTEFTASFKANRKDFLDILERMEVFAEIDQTNTVKISLSSEEVVI 292 Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + G A E + N + ++I FN +YL++ +DN DE+V + S Sbjct: 293 STLPSERGFAKEVLPAEVNIDGNLEIGFNVEYLMDPLDNAD-----WDEIVMKFTSDLGP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + N Y+LMP+R+ Sbjct: 348 ALITSPEDE---------NYTYILMPVRL 367 >gi|309804912|ref|ZP_07698974.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|309809746|ref|ZP_07703600.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 2503V10-D] gi|308165851|gb|EFO68072.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 09V1-c] gi|308169925|gb|EFO71964.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 2503V10-D] Length = 376 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|296110745|ref|YP_003621126.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii IMSNU 11154] gi|295832276|gb|ADG40157.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii IMSNU 11154] Length = 377 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 172/394 (43%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R +++L R I + TIP+ +V + ND L + S +I I I S Sbjct: 1 MQFSINRQAFIKILNDVSRAISSRTTIPILTNVKIVLNDEELVLTGSNSDISIESRIDQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV+ L G +I+ G S+F + Sbjct: 61 DTSAQLVIKETGGITLPATFFSNIVKNLPADHMTLAVD----GVRAHITSGASDFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E V + ++++ L +++ +T + +T+E R L GI +N D+K A Sbjct: 117 DVRNYPQLPEMTDVQTLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174 Query: 174 VATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + + +I+P K+ E+ +L +D V + L+ ++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGTETTVNADVIIPAKSFNELQSLLEGQD-RVDIKLAANQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + RL++G +P +IP + +L + + L A++R S++S R V+L+L+ Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTQLTIEASTLLGAINRASLLSHESRNNVVQLTLA 293 Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + +T + ++G+ E + ++I FN Y+ + + S V + Sbjct: 294 DGVVTLTGTSQEVGRVQEELATTSVEGENLEISFNPDYVRDALRVFSGKPVD-----VKF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ + + ++ P+R Sbjct: 349 TSNLRPFTLTPAGETDDKQ-------LQLITPVR 375 >gi|167762355|ref|ZP_02434482.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC 43183] gi|167699998|gb|EDS16577.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC 43183] Length = 374 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 103/372 (27%), Positives = 178/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + L R+I KN +P+ L + DG L + S E + + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + F N E+ + + + + L EFP Sbjct: 61 DSDADGRFAVTAKTLLDALKEIPEQP--LTFDINTSSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGENAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E + +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPANLMKNLLPKEQGTVTIEFDERNAVVTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y PM I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPAEQEENED 362 >gi|117927213|ref|YP_871764.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B] gi|117647676|gb|ABK51778.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B] Length = 387 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 91/400 (22%), Positives = 171/400 (42%), Gaps = 30/400 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V+R + + + R + + ++PV +L++A D L I + E+ + +I A+ Sbjct: 1 MRFQVDRGLFADAVAWSARTLPARPSMPVLGGLLIEAMDE-LRIASFDYEVSASASIDAT 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G VS LL +I R L G+ + I+ G S F L P E+P+ Sbjct: 60 IAETGRALVSGRLLAEISRNLPAQP----VDVELDGSRLVIACGASRFTLPLLPIEEYPN 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + V + A ++ L G+ I+ + + L ATD +R Sbjct: 116 LPPLP-TLAGTIGADLFATAVSQVVVAAGRDDTLPVLTGVRMEIDRDVMTL--AATDRYR 172 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS------ESRIHL--- 230 LAV + + ++P + +GE+ + L++ + V + LS E+ I Sbjct: 173 LAVRDFHWQPARGDLTAAALIPARTLGEVAKALTTG-AEVTIFLSTESTSNENLIGFSGR 231 Query: 231 -NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + RLIDGE+ Y++++P +V L +AV RVS+++ R V+L+ Sbjct: 232 GTSGERQTTTRLIDGEYVKYRSLLPAEAAATAQVATAALIEAVRRVSLVA-PRTSPVRLT 290 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYN----ECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + D+L + D +A E ++ + + I FN YLL+ + + S+ Sbjct: 291 FNPDRLTLEAGTGDDAQASEWIDARFESSTGDDEFVIAFNPAYLLDGLGAVESETT---- 346 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S N +R + + Y+LMP+R+ Sbjct: 347 -TLSFTSPNKPAVLRAGKDADTSADAGSDDYRYLLMPVRL 385 >gi|227539239|ref|ZP_03969288.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|300770712|ref|ZP_07080591.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium spiritivorum ATCC 33861] gi|227240921|gb|EEI90936.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC 33300] gi|300763188|gb|EFK60005.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium spiritivorum ATCC 33861] Length = 374 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 178/386 (46%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +P+ + L + D L I A+ + + ++ Sbjct: 1 MRFIVSTSILLKQLQAISGASSSSTVLPILENFLFEIKDNTLTISATDLQTSMVTSLQIE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + + +L + ++ L D N L E IS GD + L +FP Sbjct: 61 SKEEGRVAMPSKILIETLKTLPDQPVAFSVDTNTLAIE--ISAGDGKYKLSGENADDFPK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + VL + +T FA++ +E+R ++G+ + E+ V+TD H+ Sbjct: 119 IPTVDNTSTVNIPAPVLAEAINKTIFAVSNDELRPAMSGVLVQLAEQSTTF--VSTDAHK 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L V K S+I+P+KA+ + L S D +V + + + ++ + R Sbjct: 177 L-VRYRRTDIYTDKPASLILPKKALSLLKSSLPSDDVNVTIEYNNTNAFFQFGNIFLICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y+ VIP N +L V+ + + RV I ++ V+L +S +L ++ + Sbjct: 236 LIDERYPDYEAVIPQVNPNKLTVDRSLFLNTLRRVVIFANKTTHQVRLRISGSELNISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A E ++ + M+I FN K+L+E+++N+SS +EV+ + + N + + Sbjct: 296 DLDFSNEAHERLSCQFEGDDMEIGFNAKFLVEMLNNLSS-----EEVIIEMSTPNRAGLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 KD+ + ++MP+ + Sbjct: 351 IPA------IKDDNEDILMLVMPVML 370 >gi|160882257|ref|ZP_02063260.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483] gi|237718359|ref|ZP_04548840.1| DNA polymerase III [Bacteroides sp. 2_2_4] gi|293372862|ref|ZP_06619236.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f] gi|299146574|ref|ZP_07039642.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23] gi|156112346|gb|EDO14091.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483] gi|229452292|gb|EEO58083.1| DNA polymerase III [Bacteroides sp. 2_2_4] gi|292632151|gb|EFF50755.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f] gi|298517065|gb|EFI40946.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23] Length = 374 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 177/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + F+ N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPEQP--LTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ +SVL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|268628293|gb|ACZ13545.1| DNA polymerase III beta chain [Xenorhabdus beddingii] Length = 276 Score = 285 bits (731), Expect = 6e-75, Method: Composition-based stats. Identities = 103/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + A G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLAQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|262183096|ref|ZP_06042517.1| DNA polymerase III subunit beta [Corynebacterium aurimucosum ATCC 700975] Length = 393 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 86/399 (21%), Positives = 171/399 (42%), Gaps = 30/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K T PV +L+ A+D LE E+ I VD Sbjct: 7 FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVD 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ LL DIV L + +I +E+ +V + G S F L P ++P Sbjct: 67 EPGRIAVAGKLLSDIVASLPN-KEIEMTQED---NKVLLICGSSRFELPLIPLDDYPQLP 122 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + + A ++ L G+ IN +++ ATD RLA Sbjct: 123 VLPEVTGTINPQ-LFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEM--TATDRFRLA 179 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 + + + + + ++VP K + E R L + + V++++ E L+ + Sbjct: 180 MRTFEWEPVSSDVQAKLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHAD 239 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN ++P ++ + L++A+ RVS+++ R +++ S Sbjct: 240 NRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEG 298 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + D G+A E++ +N I FN YL + + + ++ VVF Sbjct: 299 EVTL-AAGADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTN-----RVVFGFTE 352 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ ++ + + Y+LMP+R+ Sbjct: 353 PSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 391 >gi|227549438|ref|ZP_03979487.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] gi|227078515|gb|EEI16478.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM 44291] Length = 406 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 170/399 (42%), Gaps = 29/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + + R + KNT PV +++ A+D LE E+ I A V Sbjct: 19 FRVHKEDLSDAVAWVARSLPTKNTQPVLRAIVITADDSGLEFAGFDYEVSSRVRIGAEVS 78 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + V+ L+ DIV + + + G+++ + G + F L P ++P Sbjct: 79 QPGRVAVAGKLMADIVANMPAKPM----EVSTDGSKMLLQGGSARFELPLMPLDDYPQLP 134 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V S+ + V + A ++ L G+ I+ L+L ATD RLA Sbjct: 135 TLPEVTGRISPSAFVG-AVTQVASAAGRDDTLPMLTGVHMEISGNALQL--TATDRFRLA 191 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIE 233 + + + + ++VP K + + R L + + V++++ + L+ Sbjct: 192 IRRLQWEPASDDVEAKLLVPAKTLLDNARTLDTHVEEPVEIAVGAAGNVGGDGLFGLHSG 251 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN Q ++P ++ V L +A+ RVS+++ R V++ Sbjct: 252 NRETTTRMLDADFPNIQPLLPKTHTSMASVEIAPLVEAIRRVSLVA-DRNAQVRMHFHPG 310 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + D G+A E++ ++ + I FN YL + + I ++ VVF Sbjct: 311 EVTLHASGADSGEASETVAAAFSGADELLIAFNSGYLKDGLAVIGTN-----RVVFGFTE 365 Query: 353 SNSSVFIRGKDKDSKNNKDNK------VNAFYVLMPMRI 385 ++ + + + + + + Y+LMP+R+ Sbjct: 366 ASRPAIMIPEPEQLPEAEADGTFPTPATDFTYLLMPVRL 404 >gi|160941460|ref|ZP_02088795.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC BAA-613] gi|158435606|gb|EDP13373.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC BAA-613] Length = 372 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 172/385 (44%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ I+ + + + K T+ + +L+ A+ +++ + E+ I + Sbjct: 1 MKLRFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTNEIKLTGNDMELGIETRVEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I R+L S E++ IS +S F +Q EF Sbjct: 61 ILEHGKIALDAKLFSEITRRL-SSENASVTIESDDKFNTTISCENSVFNIQGRDGEEFAY 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++++T F+++ + + G F +NE LK+ V+ DGHR Sbjct: 120 LPYIEKDKYICLSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--VSLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + +IVP K + E+ +IL + V + S + I ++ + Sbjct: 178 ISIRKVRLKDHYEDT-KVIVPGKTLSEVSKILGGDNEKEVLIYFSTNHILFEFDNTIVVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++ VN ++R +I+ + + +++ + + + Sbjct: 237 RLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATILIRENDKKPLIINIGDNSMELK 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + ++ + I FN K+L++ + I D+E+ + + S F Sbjct: 297 LNSS-FGSMNADLMIHKTGKDIMIGFNPKFLIDALRVID-----DEEINIYMMNPKSPCF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD + N Y+++P+ Sbjct: 351 I----------KDEEENYIYLILPV 365 >gi|325912232|ref|ZP_08174629.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D] gi|325475891|gb|EGC79060.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D] Length = 376 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 179/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 EDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|89898369|ref|YP_515479.1| DNA polymerase III subunit beta [Chlamydophila felis Fe/C-56] gi|89331741|dbj|BAE81334.1| DNA polymerase III beta chain [Chlamydophila felis Fe/C-56] Length = 366 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 184/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I D + V TDG R Sbjct: 118 LPDIQNSIRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTIA--DGMVTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + IVP KAV E++++ S+DS + L +++I + + + + Sbjct: 176 LAKTDTEISLDKSFAGDYIVPIKAVEEMIKLC-SEDSEATIFLDQAKIAVECGNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK + + +L +T + Sbjct: 235 LLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|259500776|ref|ZP_05743678.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners DSM 13335] gi|259167470|gb|EEW51965.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners DSM 13335] Length = 380 Score = 285 bits (730), Expect = 7e-75, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 5 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 65 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 121 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 179 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 300 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 354 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 355 PLRPFVVVPKDSDEK--------FIQLITPVR 378 >gi|161506636|ref|YP_001576584.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571] gi|160347625|gb|ABX26299.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571] gi|323465559|gb|ADX69246.1| DNA polymerase III Beta chain [Lactobacillus helveticus H10] Length = 376 Score = 285 bits (730), Expect = 8e-75, Method: Composition-based stats. Identities = 94/392 (23%), Positives = 170/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L D L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +F ++ + ++ T FA + ++ R L G+ F N ++K AVAT Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VK+ +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL+DG +P+ +IP + + + L A++R S+++ + R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ + I FN Y+ + + V D VV Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRA-----SVTDSVVMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I D + ++ P+R Sbjct: 351 PLRPFIINPGKDDIE--------FVQLITPVR 374 >gi|239624132|ref|ZP_04667163.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA] gi|239520518|gb|EEQ60384.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA] Length = 372 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 82/385 (21%), Positives = 174/385 (45%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ I+ + + + K T+ + +L+ A+ G +++ + E+ I + Sbjct: 1 MKLIFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTGEIKLTGNDMELGIETKVEGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I R+L S E++ IS +S F +Q EF Sbjct: 61 ILEHGKIALDAKLFSEITRRL-SSENASVTIESDDKFNTTISCENSVFNIQGRDGEEFAY 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ LK ++++T F+++ + + G F +NE LK+ V+ DGHR Sbjct: 120 LPYIEKDKYICLSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--VSLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + +IVP K + EI +IL + V + S + I ++ + Sbjct: 178 ISIRKVRLKDHYDDT-KVIVPGKTLSEISKILGGDNEKEVLIYFSANHILFEFDNTVVVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GE+ ++ + ++ VN ++R +I+ + + +++ + + M Sbjct: 237 RLIEGEYFRINQMLSSDYETKVSVNKKEFLNCIERATILIRENDKKPLIINIGDNSMEMK 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +++ G + ++ + I FN K+L++ + I D+E+ + + S F Sbjct: 297 LNSS-FGSMNADLMIHKTGKDIMIGFNPKFLIDALRVID-----DEEINIYMMNPKSPCF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ N Y+++P+ Sbjct: 351 I----------KDDEENYIYLILPV 365 >gi|268628367|gb|ACZ13582.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. laumondii] Length = 276 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|53714271|ref|YP_100263.1| DNA polymerase III subunit beta [Bacteroides fragilis YCH46] gi|60682327|ref|YP_212471.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC 9343] gi|253564787|ref|ZP_04842243.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5] gi|265766237|ref|ZP_06094278.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16] gi|52217136|dbj|BAD49729.1| DNA polymerase III beta chain [Bacteroides fragilis YCH46] gi|60493761|emb|CAH08551.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC 9343] gi|251946252|gb|EES86629.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5] gi|263253905|gb|EEZ25370.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16] gi|301163801|emb|CBW23356.1| putative DNA polymerase III beta chain [Bacteroides fragilis 638R] Length = 374 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L Q DG L + S E + ++ Sbjct: 1 MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + K + E+ + + + + L EFP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPEQPLTFDIKPDTY--EITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + +L + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKL-VRCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|255690065|ref|ZP_05413740.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565] gi|260624342|gb|EEX47213.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565] Length = 374 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPEQP--LTFDVNPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + VL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGMVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N +L V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKLTVDRQQLMGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ DEV+ L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|315654132|ref|ZP_07907048.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners ATCC 55195] gi|315488828|gb|EFU78474.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners ATCC 55195] Length = 380 Score = 285 bits (729), Expect = 9e-75, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 5 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 65 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 121 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 179 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 239 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 300 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 354 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 355 PLRPFVVVPKDSDEK--------FIQLITPVR 378 >gi|260173819|ref|ZP_05760231.1| DNA polymerase III, beta chain [Bacteroides sp. D2] gi|315922082|ref|ZP_07918322.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313695957|gb|EFS32792.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 374 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 177/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + F+ N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPEQP--LTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ +SVL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ DEV+ L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|257783817|ref|YP_003179034.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469] gi|257472324|gb|ACV50443.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469] Length = 366 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 182/387 (47%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + L + I T+P+ + L+A +G+LE+++S I I I A+ Sbjct: 1 MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIAAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G VS ++ +IV+ L D A E +++ S+F L + ++ Sbjct: 61 VEEEGETVVSGKVIQNIVKNLPDAAITFEGGE----RTLSVICQRSSFRLNTLSAHDWAQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + EL S +L +V++ + + E R L GI + + ++L VATD R Sbjct: 117 FPEFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRL--VATDSFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + + SII+ + ++L + S + V + +++++ + + R Sbjct: 175 LAVCDSNTDTPAGESFSIIISGEVFHDVLSMRSMTE-KVLIGTTDNQVIFQFGNTTHISR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLCMT 298 I+G FP+Y+ ++P S + +N + A+ RVS+++ + +V+ + +D ++ ++ Sbjct: 234 KIEGHFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIA-LANPSVRFDVDADGKEVKLS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G++ E + + I NY Y+ + ++ S D + L + Sbjct: 293 ASSPDQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSK----DLLRLELQGPSQPAI 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + KVN Y+LMP+R+ Sbjct: 349 FKS---------NGKVNYLYLLMPVRL 366 >gi|329919782|ref|ZP_08276733.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G] gi|328937129|gb|EGG33557.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G] Length = 376 Score = 285 bits (729), Expect = 1e-74, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|268628379|gb|ACZ13588.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. akhurstii] Length = 276 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSSPHAEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|42525749|ref|NP_970847.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405] gi|41815760|gb|AAS10728.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405] Length = 367 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 101/384 (26%), Positives = 193/384 (50%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI+ +R +L+ + A II K + + +VLL DG L IKA+ ++ IP + Sbjct: 1 MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS TV I+ L G K+ +L + + + F L++ PE++FP+ Sbjct: 61 IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVK--KAKFQLKTIPENDFPA 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V F + + K ++ +T F+++ +E RY++NG++ E+ L +ATDG R Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIENKED--TLYFIATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + + I + +IVP K + I + +S + +++V + E I N S S Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILNIINK-RASDEGNIEVGIGEKNIFFNFNSYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG+FPNY+ VIP + + V+ T +A+ RVS++ ++ + + L++ L ++ Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G A E + Y+ + + NY Y+ + + I+S D + + ++ ++ Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITS-----DRIKVEFTEAMKAITLK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + F+++MPM+ Sbjct: 351 PEPEE---------DFFHIIMPMQ 365 >gi|268628373|gb|ACZ13585.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. luminescens] gi|268628375|gb|ACZ13586.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. luminescens] Length = 276 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|268628377|gb|ACZ13587.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. hainanensis] Length = 276 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHAEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|329961133|ref|ZP_08299388.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057] gi|328532071|gb|EGF58881.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057] Length = 374 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 100/372 (26%), Positives = 178/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G V+A L D ++++ + F+ N E+ + + + + L EFP Sbjct: 61 ESDMDGRFAVAAKTLLDALKEIPEQP--LTFEINTSSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + +L + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQILLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLMKNLLPKEQGNVTIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQLLTGALRRVSIFSSQASSLIKLRMQENLIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ DEV+ L + + Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|237715176|ref|ZP_04545657.1| DNA polymerase subunit III [Bacteroides sp. D1] gi|262408871|ref|ZP_06085416.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22] gi|294647647|ref|ZP_06725214.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a] gi|294810714|ref|ZP_06769362.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC 1b] gi|298481745|ref|ZP_06999935.1| DNA polymerase III, beta subunit [Bacteroides sp. D22] gi|229445009|gb|EEO50800.1| DNA polymerase subunit III [Bacteroides sp. D1] gi|262353082|gb|EEZ02177.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22] gi|292637013|gb|EFF55464.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a] gi|294442047|gb|EFG10866.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC 1b] gi|295087705|emb|CBK69228.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens XB1A] gi|298271967|gb|EFI13538.1| DNA polymerase III, beta subunit [Bacteroides sp. D22] Length = 374 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V A L D ++++ + F N E+ + + + + L EFP Sbjct: 61 ESDTNGRFAVVAKTLLDALKEIPEQP--LTFDINPDNYEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ +SVL + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGAVTIEFDERNAVFMLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ DEVV L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|301165373|emb|CBW24944.1| putative DNA polymerase III, beta chain [Bacteriovorax marinus SJ] Length = 371 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 116/389 (29%), Positives = 213/389 (54%), Gaps = 22/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + D+ L +++++N+ P+ + L++ + L I A+ E+ I A Sbjct: 1 MKIRLHTEDLKSALNKVLSVVDKRNSRPILTYTLIETANDQLNISATDLEVSSKVVIKAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G V+A ++DI+++L G +I +++ T + ++ GD ++ L + +FP Sbjct: 61 VDNPGKFCVNAKNIFDILKELP-GTEIELSLDDQSNT-LKLNCGDIHYSLLIYKADDFPH 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V F+L+S L N++ +T +A+ +E R YLNGI+ E D KL AVATDGHR Sbjct: 119 LVFNQDVNKFKLSSEQLANIINKTSYAVLNDETRLYLNGIYLQ--EIDSKLRAVATDGHR 176 Query: 181 LAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES-LS 236 L++ E D+ + + II+PRK + EI +I + DS +++S+ ++ +++N ++ Sbjct: 177 LSLLETDLSENNNETLINGIIIPRKGIFEIKKISETYPDSEIELSVDDTFLYVNAKNEYF 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +SVRLI E+P YQ VIP + + + A+ R+ IMS+ + V+L LS + Sbjct: 237 LSVRLIAREYPKYQAVIPNKTTYTMTTDRNSFFDAIRRIKIMSNEKSNGVRLKLSDQTMT 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T ++P +G A+E+M V YN M+I FN KYL++ + + + E+ L++ S Sbjct: 297 LTANHPSLGDAMETMPVDYNGKEMEIGFNAKYLIDTLHSFD-----EGEISLELNNELSP 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I+ ++ N ++MP+++ Sbjct: 352 IIIKS---------NSLPNYLGIIMPLKL 371 >gi|85857847|ref|YP_460049.1| DNA polymerase III subunit beta [Syntrophus aciditrophicus SB] gi|85720938|gb|ABC75881.1| DNA polymerase III, beta chain [Syntrophus aciditrophicus SB] Length = 372 Score = 284 bits (728), Expect = 1e-74, Method: Composition-based stats. Identities = 98/389 (25%), Positives = 191/389 (49%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++R L+ + I+ERK+T+P+ ++LL+ D ++I A+ E+ + A Sbjct: 1 MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYEAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+IT+SA L++++R++Q + +++ ++ +S + + + EFP+ Sbjct: 61 IISSGAITLSAKKLFEMIREIQGDSIHFSCDDHD---QITLSSQKAVYRIPGISADEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 +E + + + +S+LK L+ + FA++ +E R L G E+ L VATDG Sbjct: 118 VAYDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDG 177 Query: 179 HRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRLA + I II+PRK + EI +++ ++ + + L + Sbjct: 178 HRLARSYEVIEGNSPFTLEKGIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTANTL 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + V LID +P+Y VIP + N L + R+ ++S+ + V L+L+++++ Sbjct: 238 LKVSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNRMI 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 M NPD+G+A + + V Y + + FN YL++ I+ I ++EV+F + S Sbjct: 298 MNSTNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIR-----EEEVLFDIGSFMKP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D V+MP+++ Sbjct: 353 SMIMPVHND---------RFLCVVMPLKL 372 >gi|302190773|ref|ZP_07267027.1| DNA polymerase III, beta chain [Lactobacillus iners AB-1] gi|309807871|ref|ZP_07701803.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|312872661|ref|ZP_07732726.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|325913673|ref|ZP_08176035.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B] gi|308168973|gb|EFO71059.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 01V1-a] gi|311091703|gb|EFQ50082.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2062A-h1] gi|325477032|gb|EGC80182.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B] Length = 376 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|332829626|gb|EGK02272.1| DNA polymerase III, beta subunit [Dysgonomonas gadei ATCC BAA-286] Length = 374 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 103/372 (27%), Positives = 179/372 (48%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + +L L ++I KNT+P+ LL+ L + A+ E + ++ Sbjct: 1 MKFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLTLTAADAETRLVTSLEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D +++L + + L T + +G NF ++P Sbjct: 61 EADGNGKFAVNAKNLLDPLKELPEQPLTFEINNDNLETFIFFHNGKYNFI--GQSGDDYP 118 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 KE E S + VL + RT FA A +E+R +NG+FF I EDL VA+DG Sbjct: 119 QPKELKETAVSLTIEPQVLFAGINRTLFASADDELRPVMNGVFFDITPEDLTF--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ A+ S I+P+K + IL + +V++ E+ ++ + S +M+ Sbjct: 177 HKL-VRCKTLSAKGAERASFILPKKPANLLKAILPKEAETVEIKFDENNAYIKMSSYTMT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R I+G +PNY +VIP +N ++ ++ A+ RVS+ S+ +KL L+ + +T Sbjct: 236 CRFIEGRYPNYNSVIPQNNTNKVILDRQTFLNALKRVSVFSNQASNLIKLQLTDRNIVVT 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM+I F +L+EI++NI S + + L + + Sbjct: 296 AQDIDFSTAAEETIACEYTGSPMNIGFKSSFLIEILNNIPSTD-----ISLELSDPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I + + + Sbjct: 351 LIIPTENEENED 362 >gi|291526545|emb|CBK92132.1| DNA polymerase III, beta subunit [Eubacterium rectale DSM 17629] Length = 370 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 180/385 (46%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++++L+ + + + + T+ + +L+ A+ +++ A+ E+ I I + Sbjct: 1 MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I + A + +IVRKL D E + + IS + F + +F Sbjct: 61 IEERGIIALDAKIFSEIVRKLPDNDV---TIETDASFKTVISCEKAKFNIIGKSGDDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK ++ +T F++A + + G F I E KL V+ DGHR Sbjct: 118 LPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + EI +I+ D V + ++ + I E+ ++ Sbjct: 176 ISIRYIEMKNHY-DSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ D ++R+N L + +DR +++ + + ++++ + + Sbjct: 235 RLIEGEYFKIDQMLSSDYDTKVRINKRELLECIDRATLLVKEGDKKPIIMNITDGNMELR 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + + I FN K+ ++ + I ++EV + + + F Sbjct: 295 I-NSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVID-----EEEVNLYMVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ Y+++P+ Sbjct: 349 I----------KDDEGKFIYLILPV 363 >gi|326692340|ref|ZP_08229345.1| DNA polymerase III, beta subunit [Leuconostoc argentinum KCTC 3773] Length = 377 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 172/394 (43%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R ++ L R I + TIP+ ++ + + L + S +I I I S Sbjct: 1 MQFSINRQVFIKSLNDVSRAISSRTTIPILTNIKIVLSQDELILTGSNSDISIEKRIEQS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G IT+ A +IV+ L G +I+ G S F + Sbjct: 61 DTSAQLVIGSTGGITLPATFFANIVKNLPADDLTLAVD----GLRASITSGASAFTINGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E + V S ++++ L +++ +T + +T+E R L GI +N D+K A Sbjct: 117 DVRNYPQLPELDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V TD HRL+ V + A+ +I+P K+ E+ +L +D V + L++++ ++ Sbjct: 175 VTTDSHRLSQRIVTLTGTDAQVNADVIMPAKSFNELQSLLEGQD-RVDIKLAKNQAVFDL 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + RL++G +P +IP + +L ++ L A++R S++S R V+L+++ Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTQLTIDAGTLLGAINRASLLSHESRNNVVQLTMT 293 Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + +T + ++G+ E + ++I FN Y+ + + + V + Sbjct: 294 DGVVTLTGTSQEVGQVQEELQTTSVEGENLEISFNPDYVRDALRVFNGKLVD-----LKF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + ++ P+R Sbjct: 349 TTNLRPFTVTPAGEVDNKQ-------LQLITPVR 375 >gi|312874976|ref|ZP_07734995.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b] gi|311089721|gb|EFQ48146.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b] Length = 376 Score = 284 bits (727), Expect = 2e-74, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 179/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 EDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|268628273|gb|ACZ13535.1| DNA polymerase III beta chain [Xenorhabdus doucetiae] Length = 276 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS ++ G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + +K L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|260101877|ref|ZP_05752114.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus helveticus DSM 20075] gi|260084305|gb|EEW68425.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus helveticus DSM 20075] gi|328468761|gb|EGF39732.1| DNA polymerase III subunit beta [Lactobacillus helveticus MTCC 5463] Length = 376 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 170/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ R+ +E L + R I + TIP+ + L D L + S +I I IP + Sbjct: 1 MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI + A +IV+KL F E + + I +S F + + Sbjct: 61 EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSENSEFTINGLDAN 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E +F ++ + ++ T FA + ++ R L G+ F N ++K AVAT Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + +I+P K++ E+ RI+ D VK+ +++ I +LS Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL+DG +P+ +IP + + + L A++R S+++ + R V L+L + Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + ++G E ++ + I FN Y+ + + V D VV Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRA-----SVTDSVVMSFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + + ++ P+R Sbjct: 351 PLRPFIINP--------GKDNIEFVQLITPVR 374 >gi|268628349|gb|ACZ13573.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii] Length = 276 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVALSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|309805919|ref|ZP_07699951.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 03V1-b] gi|308167695|gb|EFO69842.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 03V1-b] Length = 376 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|268628339|gb|ACZ13568.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. temperata] gi|268628341|gb|ACZ13569.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. temperata] gi|268628343|gb|ACZ13570.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. temperata] Length = 276 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVALSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSDVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628295|gb|ACZ13546.1| DNA polymerase III beta chain [Xenorhabdus hominickii] gi|268628297|gb|ACZ13547.1| DNA polymerase III beta chain [Xenorhabdus hominickii] gi|268628299|gb|ACZ13548.1| DNA polymerase III beta chain [Xenorhabdus hominickii] Length = 276 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + A G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLAQPHENGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|312873272|ref|ZP_07733327.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d] gi|311091152|gb|EFQ49541.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d] Length = 376 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKLATGPAVTTNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|319901724|ref|YP_004161452.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108] gi|319416755|gb|ADV43866.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108] Length = 374 Score = 284 bits (726), Expect = 2e-74, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 177/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L + S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLTVTVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G V A L D ++++ + F+ N E+ + + + + L EFP Sbjct: 61 ESDMDGRFAVIAKTLLDALKEIPEQP--LTFEINTDSLEITVQYQNGKYSLVGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + +V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLMKNLLPKEQGNVVIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENLIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ DEV+ L + + Sbjct: 296 AQDIDFSTSAEENLVCQYAGNPMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|325980883|ref|YP_004293285.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212] gi|325530402|gb|ADZ25123.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212] Length = 371 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 25/388 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60 I R +L+ L I+ER+ T+P+ +VL++ N + EI+I + S Sbjct: 4 IKTNRDTLLKPLQTVTGIVERRQTLPILSNVLIRQNQEKTSFLTTDLEIQIKTEVAESLS 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + TVSA L DI+R L +++ ++++ + + S F LQ P +FP Sbjct: 64 SQKDFAFTVSAKKLQDILRSLSADIEVTLTRKDD---HLLVKSHKSAFNLQILPAEDFPE 120 Query: 121 T-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +E E + L K+L+ FA+A ++IRYYLNG+ I+ + +L +V TDGH Sbjct: 121 VTEEPESDNAVTLTQKEFKDLLHLVQFAVAQQDIRYYLNGLLLLIDGK--QLISVGTDGH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + + K +I+PRKAV E+ ++L + +K+ ++++ + +++ Sbjct: 179 RLAFVSTGLD-KAQKKQEVILPRKAVFELSKLLHDNEDPIKIEYFQNKVRFSFSDITLIS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAVKLSLSSDKLCM 297 ++IDG+FP+Y VIP N+K +N QA+ RVSI+S+ + + V+L ++ D L + Sbjct: 238 KIIDGKFPDYNRVIPTRNNKLFEINRLVFLQALQRVSILSNQSDKFRGVRLIVNKDNLRI 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N + +A E + + Y + P+DI N YL+++++N V + V +++NSSV Sbjct: 298 ICKNNEQEEAEEELEINYQDDPVDISLNITYLMDLLNN-----VTSERVQCAFENANSSV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y++MPMRI Sbjct: 353 LMTVPGNEI---------FKYIVMPMRI 371 >gi|160891922|ref|ZP_02072925.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492] gi|270296412|ref|ZP_06202612.1| DNA polymerase III, beta subunit [Bacteroides sp. D20] gi|317480392|ref|ZP_07939492.1| DNA polymerase III [Bacteroides sp. 4_1_36] gi|156858400|gb|EDO51831.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492] gi|270273816|gb|EFA19678.1| DNA polymerase III, beta subunit [Bacteroides sp. D20] gi|316903470|gb|EFV25324.1| DNA polymerase III [Bacteroides sp. 4_1_36] Length = 374 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L + DG L S E + + Sbjct: 1 MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSATVSDSETTMVTTVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G V+A L D ++++ + F+ N E+ + + + + L EFP Sbjct: 61 ESDMDGRFAVTAKTLLDALKEIPEQP--LTFEINTDSLEITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + VL + R FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLMKNLLPKEQGMVTIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + + + ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLLGALRRVSIFSSQASSLIKLRMQENLIVIS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ DE+V L + + Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISA-----DEIVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIIPVEQEENED 362 >gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656] gi|238874106|gb|ACR73813.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656] gi|291529188|emb|CBK94774.1| DNA polymerase III, beta subunit [Eubacterium rectale M104/1] Length = 370 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++++L+ + + + + T+ + +L+ A+ +++ A+ E+ I I + Sbjct: 1 MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I + A + +IVRKL D E + + IS + F + +F Sbjct: 61 IEERGIIALDAKIFSEIVRKLPDNDV---TIETDASFKTVISCEKAKFNIIGKSGDDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ LK ++ +T F++A + + G F I E KL V+ DGHR Sbjct: 118 IPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ +++ ++VP K + EI +I+ D V + ++ + I E+ ++ Sbjct: 176 ISIRYIEMKNHY-DSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+GE+ ++ D ++R+N L +DR +++ + + ++++ + + Sbjct: 235 RLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELR 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + N +G E +++ + + I FN K+ ++ + I ++EV + + + F Sbjct: 295 I-NSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVID-----EEEVNLYMVNPKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ Y+++P+ Sbjct: 349 I----------KDDEGKFIYLILPV 363 >gi|268628353|gb|ACZ13575.1| DNA polymerase III beta chain [Photorhabdus sp. Q614] gi|268628355|gb|ACZ13576.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp. asymbiotica] Length = 276 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SKNQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628351|gb|ACZ13574.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp. australis] Length = 276 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SKNQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|187250426|ref|YP_001874908.1| DNA polymerase III subunit beta [Elusimicrobium minutum Pei191] gi|186970586|gb|ACC97571.1| DNA polymerase III, beta subunit [Elusimicrobium minutum Pei191] Length = 369 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 108/388 (27%), Positives = 194/388 (50%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + LE L + + T+P+ + L++ +G +++ + E+ I A Sbjct: 1 MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+T+ + DI++ L + +I+ + +V+I G S F++ P+SE+P Sbjct: 61 ILEEGSVTIPLKEVSDILKNLPNDKEINLTVGED--NKVHIKSGKSKFWVIGTPKSEYPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L ++ +VE+T F+ +T+E RY LNG+ + K VATDG R Sbjct: 119 IPEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWVKTGN--KFEVVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRIHLNIESLS 236 LA+A I + II+P K + E+LR S S+D ++ +S++ +++ NI+ + Sbjct: 177 LALAVDTIESDTKD-FKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETT 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 RLI+G FPNY+ VIP + + + R S+ ++ VK SL+++ L Sbjct: 236 YISRLIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLK 295 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T ++ M + M V Y P +I FN +Y+L+++ NIS+ ++V F ++ Sbjct: 296 ITSNSQKM-DFSDEMKVEYTAEPFEISFNPQYVLDVLKNIST-----EKVEFSFINAAQP 349 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I + N YV+MP+R Sbjct: 350 VLIE---------EINNTKFKYVIMPVR 368 >gi|299143461|ref|ZP_07036541.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] gi|298517946|gb|EFI41685.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386 str. F0131] Length = 364 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 188/386 (48%), Gaps = 25/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +ER ++ + + I + T+ + +L+ A D LL + AS EI I +PA Sbjct: 1 MKIRIERKELSRHISIVQKAISSRTTMQILEGILIIAKDNLLTLIASDTEISIKTTLPAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I V++ L DI+RKL I F+ N+ T +NI S F +Q EFP Sbjct: 61 ISDEGKIVVNSRLFGDIIRKL--QGDIIDFEINQ--TNMNIKCLKSEFNIQCQVPDEFPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +L SS K + +T FA++ +E R G+ I + K+ VA DG R Sbjct: 117 LPRVDENLTIKLKSSDFKEAIRKTSFAVSFDETRVAFTGVLMDIKNK--KINFVALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + + + S I+P +++ E+++I+ + + V +++ + + +++ Sbjct: 175 MALK--SLDTECEENISAIIPARSLNELVKIIEN-EEYVNLTIGRNSLKFDLDKTIFYTT 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L+ GEF Y+ +I + V +L+ +++R ++++ + VKL + ++ +T Sbjct: 232 LLSGEFFKYEGLIKNDQSIIVEVLKHDLQSSLERATLLAKEDKANLVKLDMKDSEIEITS 291 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G ES++ + + I FN KYLLE + I S++ V S + I Sbjct: 292 -NSEIGNVEESVDAKISGENLKIAFNSKYLLEGVRIIESEK-----VTLNFTDSINPCII 345 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R +D + Y+++P+R+ Sbjct: 346 REEDD---------KDYIYLVLPVRL 362 >gi|268628287|gb|ACZ13542.1| DNA polymerase III beta chain [Xenorhabdus koppenhoeferi] Length = 276 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 100/271 (36%), Positives = 161/271 (59%), Gaps = 6/271 (2%) Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+ TV A +DI R L DGA+IS + G + + G S F L + P S+FP+ Sbjct: 12 HEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPASDFPNL 68 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRL Sbjct: 69 DHWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRL 126 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 AV ++I + S+IVPRK V E++R+L D+ +++ + + I ++ + +L Sbjct: 127 AVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKL 185 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +N Sbjct: 186 VDGRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLKITANN 245 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 P+ +A E ++V Y M+I FN Y+L++ Sbjct: 246 PEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|162456447|ref|YP_001618814.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56'] gi|161167029|emb|CAN98334.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56'] Length = 376 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + D+L L+ + ++K+ +P +VLL A + + A+ + +TG A Sbjct: 1 MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTGQTHAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V A L + V+ + DG E + + + L P SEFP Sbjct: 61 IKTGGTVAVPARDLLERVKAMPDGPIQITTTEGAHTSLKAVGSPR-RYTLPGLPGSEFPQ 119 Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S EL L L+ RTHF+++T+E R ++N F + ++ V TDGH Sbjct: 120 LPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGD--RVRMVTTDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES--RIHLNIES 234 RL+ E + A ++++P KA+ E+ R+ + + V++++S NI Sbjct: 178 RLSKMEATVSGSSA-TATMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIAG 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + SV+L+D +FP YQ VIP ++ +R +A+ +++ ++ R VKLS++ Sbjct: 237 MQFSVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPGT 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T ++PD G + + V Y+ + I FN KY L+++ +I D+EV+ + Sbjct: 297 LRITSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASID-----DEEVILGISGEL 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR ++ N+ + V+MPMRI Sbjct: 352 DPAVIRP------GSESNQQSYVAVIMPMRI 376 >gi|268628279|gb|ACZ13538.1| DNA polymerase III beta chain [Xenorhabdus japonica] Length = 276 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + A G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLAQPHEQGATTVPARKFFDIWRGLPDGAKISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMSIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y++V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRHVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628335|gb|ACZ13566.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. thracensis] gi|268628337|gb|ACZ13567.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. thracensis] Length = 276 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVALSLPHEGGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|305681648|ref|ZP_07404454.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC 14266] gi|305658808|gb|EFM48309.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC 14266] Length = 418 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 30/400 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K PV +L+ A+D LE E+ IPA V+ Sbjct: 30 FVVAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVN 89 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L+ DI L + F G+ V + G S F L S P ++P+ Sbjct: 90 QPGRIAVAGKLIADITATLPNKPVEIFVD----GSTVQLKCGSSRFELPSIPLDDYPTLP 145 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + V + A ++ L G+ I ED+ L ATD RLA Sbjct: 146 TLPEVTGAINP-RLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITL--TATDRFRLA 202 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILS-SKDSSVKVSLS-------ESRIHLNIE 233 + + + +++P K E R L + V++++ E ++++ Sbjct: 203 LRRFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVD 262 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + RL+D EFPN ++P + V ++L+ A+ RV++++ R +++ + Sbjct: 263 ARQTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVA-DRNAQIRMHFTPG 321 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ ++ D G A ES+ + + I FN YL + + V VVF Sbjct: 322 EVLLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHV-----VRTQRVVFGFT 376 Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385 S+ + + + D + Y+LMP+R+ Sbjct: 377 ESSRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 416 >gi|329942797|ref|ZP_08291576.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10] gi|332287389|ref|YP_004422290.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC] gi|313847969|emb|CBY16966.1| DNA polymerase III, beta chain [Chlamydophila psittaci RD1] gi|325506563|gb|ADZ18201.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC] gi|328815057|gb|EGF85046.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10] gi|328914638|gb|AEB55471.1| DNA polymerase III, beta subunit [Chlamydophila psittaci 6BC] Length = 366 Score = 283 bits (725), Expect = 3e-74, Method: Composition-based stats. Identities = 95/385 (24%), Positives = 183/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTIA--NGTATVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA ++++ + I+P KAV EI+++ S+DS + L +++I + + + + Sbjct: 176 LAKTDIEVSLDKSFTGDYIIPIKAVEEIIKLC-SEDSEASIFLDQAKIAVECGNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + L ++ L + +V++ ++ +VK + + +L +T + Sbjct: 235 LLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|217967933|ref|YP_002353439.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724] gi|217337032|gb|ACK42825.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724] Length = 367 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 180/389 (46%), Gaps = 26/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ D+ + L + K TIP+ +V ++A + L ++ + EI + ++P Sbjct: 1 MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + A L D++ KL + ++ I G S+ +Q EFP Sbjct: 61 VEEPGEVCLPASLFIDVIGKLPE---VTLEIHVNERNRAVIHAGYSDIEIQGESTEEFPK 117 Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y + +++T FA A +EI+ L G+ F ++ KL VA DGH Sbjct: 118 VEIGNIGEYHASFDRILFAKAIKQTIFAAAEDEIKQVLTGVLFE--GKEGKLNMVAVDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA+ ++I A IIVP K++ E +I++ D V ++ ++++ N + Sbjct: 176 RLALKTLEIEKDFAP---IIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVFNCGEIYFI 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297 RL+ G+FP Y +IP + N + + R+ + + + VK+SLSS+++ + Sbjct: 233 SRLLQGQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKISLSSEEVVI 292 Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + G A E + + ++I FN +YL++ +DN DEVV R S Sbjct: 293 STLPSERGFAKEVLPAEVEIDGNLEIGFNVEYLMDPLDNAD-----WDEVVMRFTSDLGP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + N Y+LMP+R+ Sbjct: 348 ALITSPEDE---------NYTYILMPVRL 367 >gi|268628329|gb|ACZ13563.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. tasmaniensis] gi|268628331|gb|ACZ13564.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. tasmaniensis] Length = 276 Score = 283 bits (724), Expect = 3e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVALSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628333|gb|ACZ13565.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. tasmaniensis] Length = 276 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVALSLPHEAGATTVPARKFFDIWRGLPDGAEISLELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P S DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|313885457|ref|ZP_07819207.1| DNA polymerase III, beta subunit [Eremococcus coleocola ACS-139-V-Col8] gi|312619187|gb|EFR30626.1| DNA polymerase III, beta subunit [Eremococcus coleocola ACS-139-V-Col8] Length = 384 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 189/395 (47%), Gaps = 26/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55 MK T+ R ++L + R I K TIP+ + ++ N + + S +I I Sbjct: 1 MKFTINRQKFTDVLNNVSRAIPGKTTIPILTGIKIEVNPDGVTLIGSDADISIESFLSNQ 60 Query: 56 --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ ++ GSI V A L DI+RKL + E++ + I+ G + F L Sbjct: 61 DESLQLNIKEQGSIVVGARLFNDIIRKLPTNEILL---ESDSNYLLTITSGPAVFTLNGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E ++ + L + K ++ T F+ + +E R L G+ I+ + + Sbjct: 118 DGAAYPHLPEIDFENTVSLPTLAFKEMINHTIFSASNQESRPILTGLNLSIHPD--YISG 175 Query: 174 VATDGHRLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ V++ + + ++ +P+K V E++RI+ D +++ ++E ++ Sbjct: 176 VATDSHRLSRREIPVELNTDLLDLTNVTIPKKTVTELVRIVED-DQKLQMLVNEQQVIFI 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 +E+L++ RL++G +P+ +IP ++ +L VN + A++R S+MS + V+LS+ Sbjct: 235 LENLTIYSRLLEGNYPDTDRLIPSNHQTQLVVNANDFLAAIERASLMSHQSKNNIVQLSI 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++V + G+A E + + + + I FN Y+ + + + + ++ D Sbjct: 295 KDQAVELSVSGNERGRASEDIQLKAVSGQDLLISFNPDYMRDALKSFNGIDIKID----- 349 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + D + + +L P+R Sbjct: 350 FQTAVRPMLLSALDGSDLAHNE----LLQLLTPIR 380 >gi|255010438|ref|ZP_05282564.1| putative DNA polymerase III beta chain [Bacteroides fragilis 3_1_12] gi|313148242|ref|ZP_07810435.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12] gi|313137009|gb|EFR54369.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12] Length = 374 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 97/372 (26%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I KN +P+ L Q DG L + S E + ++ Sbjct: 1 MKFIVSSTALSSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V+A L D ++++ + K + E+ + + + + L EFP Sbjct: 61 ESDSNGKFAVAAKTLLDALKEIPEQPLTFEIKPDTY--EITVQYQNGKYSLMGQNADEFP 118 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ + +L + R+ FA A +E+R +NGI+F I ED+ + VA+DG Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + A+ + + I+P+K + +L + V + E +ES M Sbjct: 177 HKL-VRCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ V+ L A+ RVSI SS +KL + +++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLIGALRRVSIFSSQASSLIKLRMQENQIVVS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+ Y M I F +L++I++NIS+ +EV+ L + + Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----EEVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 + +++ + Sbjct: 351 VVIPVEQEENED 362 >gi|161598680|ref|NP_938411.2| DNA polymerase III subunit beta [Corynebacterium diphtheriae NCTC 13129] Length = 395 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 169/399 (42%), Gaps = 29/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 VE+ D+ + R + K T PV V++ A+D LE E+ I A V Sbjct: 8 FRVEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVR 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L+ DI+ L + I F E GT+V + G S F L P E+P Sbjct: 68 QPGRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + V ++ + V + A +E L GI I+ E++ L ATD RLA Sbjct: 124 QLPAVTGAIDP-NLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTL--TATDRFRLA 180 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLNIE 233 + + + +++P K + + R L S V++++ E ++I+ Sbjct: 181 LRRFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHID 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN ++P ++ V + L A+ RV++++ R +++ + D Sbjct: 241 NRQTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVA-ERNAQIRMQFTRD 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ D G A ES+ + I FN YL + + I + VVF Sbjct: 300 EVILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRTS-----RVVFGFTE 354 Query: 353 SNSSVF-IRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + I + + + D Y+LMP+R+ Sbjct: 355 PSRPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 393 >gi|312871279|ref|ZP_07731377.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a] gi|311093293|gb|EFQ51639.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a] Length = 376 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 178/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GSI + A +I++KL F E + + I +S+F + Sbjct: 61 EDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF ++ K ++ T FA+A +E R LNG+ F N ++ + A+AT Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ + A ++++P ++ E+ +I++ D V V E+++ I +++ Sbjct: 176 DSHRLSRRTLKFATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293 RL++G +P+ + +IP + ++ L ++++RVS+++ R VK L++ Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ D+ ++G E + N ++I FN YL + + + D +V + Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + KD D K ++ P+R Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374 >gi|229816998|ref|ZP_04447280.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM 20098] gi|229785743|gb|EEP21857.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM 20098] Length = 374 Score = 283 bits (724), Expect = 4e-74, Method: Composition-based stats. Identities = 92/387 (23%), Positives = 171/387 (44%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + + P+ + L+A DG L + A EI I A Sbjct: 1 MKVEVNSGALADAVAWTTRVIDARPSNPILAGIRLEAADGALRLSAFNYEISARDHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI V LL DI + L T + I+ G S F +Q P +E+P Sbjct: 61 VDESGSILVLGKLLADITKSLPSEKTYLSA----NSTTLTITSGKSTFTMQLMPNAEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A++ EE R L G+ + + K+ +TD R Sbjct: 117 LPSMPGMLGQV-DAPTFIQAVSQACVAVSREENRPVLTGVRMQFDGD--KVVLTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237 LA A Q + + + R + + ++ R L+ + + +E+ L ++ S Sbjct: 174 LARATFSWSPQDPTVHTTTLVRGSLLRDVSRSLNERQNLTLDFDTENPSLLGFDNAGRSS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + + ++ +L A+ RV++++ R +++ S +L + Sbjct: 234 TSQLIDGEFPAVDRLFADDYPIQAVIDKQSLIGAIKRVALVA-ERDAPIRMVFSGQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E ++V + + + FN YL+E + IS + V +L ++ V Sbjct: 293 SAGAVDEAQAKEIIDVDMDGDDITVAFNPSYLIEGLSAIS-----EPYVRMKLTTAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|268628305|gb|ACZ13551.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L DS +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFVFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SQNQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628303|gb|ACZ13550.1| DNA polymerase III beta chain [Xenorhabdus bovienii] gi|268628307|gb|ACZ13552.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 282 bits (723), Expect = 4e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L DS +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFVFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|119025020|ref|YP_908865.1| DNA polymerase III subunit beta [Bifidobacterium adolescentis ATCC 15703] gi|118764604|dbj|BAF38783.1| DNA polymerase III, b subunit DnaN [Bifidobacterium adolescentis ATCC 15703] Length = 374 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 161/387 (41%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 1 MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L G+ + I+ G S F +Q PESE+P Sbjct: 61 VDEAGSVLVLGKLLADITKSLPAAKTYLSTD----GSTMTITSGKSTFTMQLMPESEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S V + A++ EE R L GI + K+ +TD R Sbjct: 117 LPVVPTKLGQV-DSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237 LA + + A + + + R ++ + + +V + + Sbjct: 174 LARSSFTWTPEDATISTTALVRGSLLRDMARSLDEHQNVTIDFDADNPSLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + +N L A+ RVS+++ R +++ S +L + Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVA-ERNAPIRMVFSGQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YL++ + IS + V ++ ++ V Sbjct: 293 SAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMTTAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|268628313|gb|ACZ13555.1| DNA polymerase III beta chain [Xenorhabdus indica] gi|268628315|gb|ACZ13556.1| DNA polymerase III beta chain [Xenorhabdus indica] Length = 276 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEEGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276 >gi|225028837|ref|ZP_03718029.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353] gi|224953833|gb|EEG35042.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353] Length = 370 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 175/387 (45%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT ++ L + + + K T+ + +L++A D +++ A+ E+ I I + Sbjct: 1 MKITCSKNQFLYGVNTVSKAVSNKTTMDILQCILIEAYDDCIKLTANDTELGIETVIEGT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + +I++K+ D E + + NI + +F Sbjct: 61 IIEPGKIALEAKIFSEIIKKIPDNDV---CIETDESGKTNIECEQIQCSIMGRKGDDFSH 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L+ LK ++ +T F+++ E + G I E+ K+ + DGHR Sbjct: 118 LPEIEKENKITLSQFDLKEVIRQTIFSVSDNENNKLMTGELLSI--ENNKMTVTSLDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 ++V +++ KM +IVP K + E+ +IL + ++ + L++ I + Sbjct: 176 ISVRNIELQESYPKME-VIVPGKTLSEVSKILPGEAKDTINLYLTDKHILFEFGETKVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RL++G+F N ++ + +L +N L + +DR ++ + + L + ++++ + Sbjct: 235 RLLEGKFYNIGQMLSNDYETKLTINKMELLRCLDRSTLFVKESDKKPIILKIENEQMNLM 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +G + + + + I FN K+L++ + I ++EV L +S + Sbjct: 295 ISSQ-IGSMKDQIAISKEGKDLVIGFNPKFLVDALRVID-----EEEVTIYLINSIAPCI 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR D K + Y+++P+ + Sbjct: 349 IR----------DEKSSYLYLILPINV 365 >gi|225020876|ref|ZP_03710068.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii ATCC 33806] gi|224946358|gb|EEG27567.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii ATCC 33806] Length = 396 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 30/400 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ + R + K PV +L+ A+D LE E+ IPA V+ Sbjct: 8 FVVAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVN 67 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L+ DI L + F G+ V + G S F L S P ++P+ Sbjct: 68 QPGRIAVAGKLIADITATLPNKPVEIFVD----GSTVQLKCGSSRFELPSIPLDDYPTLP 123 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + + V + A ++ L G+ I ED+ L ATD RLA Sbjct: 124 TLPEVTGAINP-RLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITL--TATDRFRLA 180 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILS-SKDSSVKVSLS-------ESRIHLNIE 233 + + + +++P K E R L + V++++ E ++++ Sbjct: 181 LRRFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVD 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + RL+D EFPN ++P + V ++L+ A+ RV++++ R +++ + Sbjct: 241 ARQTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVA-DRNAQIRMHFTPG 299 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ ++ D G A ES+ + + I FN YL + + V VVF Sbjct: 300 EVLLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHV-----VRTQRVVFGFT 354 Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385 S+ + + + D + Y+LMP+R+ Sbjct: 355 ESSRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 394 >gi|33860561|ref|NP_892122.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp. pastoris str. CCMP1986] gi|33633503|emb|CAE18460.1| DNA polymerase III, beta chain [Prochlorococcus marinus subsp. pastoris str. CCMP1986] Length = 385 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 194/399 (48%), Gaps = 30/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58 M+I +++ + + + + T P+ ++LL A+ G + + + I + Sbjct: 1 MEIVCNQNEFNYAIQLVSKAVASRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V+ G+IT+ + LL +IV KL +S + E + I +F ++ P ++ Sbjct: 61 ATVNKSGAITIPSKLLSEIVNKLPSETPVSLDVD-ESSDNILIKSDRGSFNIKGIPSDDY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E S + S ++ T FA ++++ + L G+ F N + L+ + ATDG Sbjct: 120 PSLPFVESGTSLNIDPSSFLKALKLTIFASSSDDSKQLLTGVNFTFNLKYLE--SAATDG 177 Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227 HRLAV VD + S+ +P +++ EI +++S S ++S+K+ + + Sbjct: 178 HRLAVVLVDNKENFDEKEDFASNEENLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + ++ R ++G +PNY +IP + K N + ++++R+++++ + VK Sbjct: 238 VVFISSNQIITTRTLEGSYPNYSQLIPDNFTKIFTFNTKKIIESLERIAVLADQQSSVVK 297 Query: 288 LSLSSDKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + L+ L + + D D+G A E + V + DI FN +YLLE + ISS + V Sbjct: 298 IKLNEKDLALVSADAQDIGNASELVPVSFYFDQFDIAFNVRYLLEGLKVISS-----ENV 352 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +F+ + + + +D N + Y++MP+++ Sbjct: 353 IFKCNLPTTPAVLVPED--------NINSFTYLVMPVQV 383 >gi|139439856|ref|ZP_01773221.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC 25986] gi|133774784|gb|EBA38604.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC 25986] Length = 367 Score = 282 bits (723), Expect = 5e-74, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 186/388 (47%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + + +G + + +T+P+ VL++A DG+LE + S I I I A Sbjct: 1 MKFTVSQSSLTQAIGVVMKGVASASTLPILSGVLVKAQDGILEFQTSNYTISIRHRIAAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + +L +I + L D E +V IS S+F L + ++FP Sbjct: 61 VEEEGEMVIPCKMLSNITKTLPDAPVTFELSE----RQVLISCEKSSFRLNTLDANDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EL + +L +V R +T++ R L G+ + ++L VATD R Sbjct: 117 FPAYAIESAVELPTDILSEMVGRVWRVTSTDKARPILGGVHMKVENNTVRL--VATDSFR 174 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + + VP A + L I++S+ +++ + +++++ + + Sbjct: 175 LAVCDTQVETSTLEGSFELNVPADAFNDALNIMASQ-ATIMIGATDTQVVFEAGNTTYVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297 R I+G +PNY+ +IP S ++++ A+ RV++++S AVK + + ++ + Sbjct: 234 RRIEGVYPNYKQLIPDSCVTSVKIDVAAFNAALKRVAVIASA-NPAVKFEIDVENGQMGL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D A E+++V I FNY Y+ ++ +S ++ E+ L S + + Sbjct: 293 SSISNDQDLAQETIDVEAEGESGTIAFNYHYIFGCLNALSKEK----EITLELKSYSQAG 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K+N Y++MP+RI Sbjct: 349 IFKSYD---------KINYLYLVMPVRI 367 >gi|268628275|gb|ACZ13536.1| DNA polymerase III beta chain [Xenorhabdus romanii] Length = 276 Score = 282 bits (723), Expect = 6e-74, Method: Composition-based stats. Identities = 99/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS ++ G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + +K L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y ++I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVNYQGSEVEIGFNVSYVLDV 276 >gi|268628289|gb|ACZ13543.1| DNA polymerase III beta chain [Xenorhabdus szentirmaii] Length = 276 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 164/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLVANCDTLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628345|gb|ACZ13571.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii NC19] gi|268628347|gb|ACZ13572.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii] Length = 276 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVALSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETESEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|104773259|ref|YP_618239.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] gi|103422340|emb|CAI96848.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. bulgaricus ATCC 11842] Length = 375 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 188/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L+ + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL KE G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P + ++ ++ Q + R S+++ + R AV+++L+ Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ ++P++GK E + + I FN Y+ + V D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D+ + ++ P+R Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373 >gi|268628317|gb|ACZ13557.1| DNA polymerase III beta chain [Xenorhabdus cabanillasii] Length = 276 Score = 282 bits (722), Expect = 6e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEEGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLXIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276 >gi|268628369|gb|ACZ13583.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. caribbeanensis] gi|268628371|gb|ACZ13584.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp. caribbeanensis] Length = 276 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + S+ G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMMARVTLSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEAEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I ++ S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L +C L+QA R +I+S+ + + V+L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SKNQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276 >gi|160944265|ref|ZP_02091494.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii M21/2] gi|158444447|gb|EDP21451.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii M21/2] Length = 368 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 185/386 (47%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I +++ + + + + +++IPV +LL+A L + E+ I I A+ Sbjct: 1 MNIVCDKTLLSAAIDGVSKAVTMRSSIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I ++A LL ++ ++ G +N + I G + F +QS P ++FP Sbjct: 61 IKEPGEIVLNAKLLSSMISRMPAGQISIVAADN---GKTTIQSGVAQFEIQSMPATDFPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VL+++++RT +A++ +E + G F I + KL VA DG+R Sbjct: 118 LPNTGAEQTLTIKTGVLRDMIDRTLYAVSQDEKKPAHTGELFEIELD--KLTIVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E I A K IIVP K + E+ +L + + V +S + + ++ Sbjct: 176 LAIVERPITA--VKDIRIIVPSKTMTEVSHLLANDDEEDVHISANRRYVVFTTAGYTIMS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 RLI+GEF NY+NVIP + + ++ + ++R S++ + R +++S + K+ + Sbjct: 234 RLIEGEFLNYRNVIPAGSRTRVTIDTKDFISTIERASLIITERLKNPLRISFTEGKVVVR 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++G+ ++ + ++I FN +YLL+ + N + ++V + S V Sbjct: 294 CQ-TNLGRVVDEFSAACEGDEVEIGFNNRYLLDALRNART-----EQVRMEISGPLSPVK 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + + Y+++P+R Sbjct: 348 VLPVEGN---------DFLYLVLPVR 364 >gi|300812000|ref|ZP_07092456.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] gi|300497026|gb|EFK32092.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus PB2003/044-T3-4] Length = 375 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL KE G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEI-AGTSFSLPPKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P + ++ ++L Q + R S+++ + R AV+++L+ Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ ++P++GK E + + I FN Y+ + V D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D+ + ++ P+R Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373 >gi|268628319|gb|ACZ13558.1| DNA polymerase III beta chain [Xenorhabdus budapestensis] gi|268628321|gb|ACZ13559.1| DNA polymerase III beta chain [Xenorhabdus budapestensis] Length = 276 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEEGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFPLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMHI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVKYHGTEMEIGFNVSYVLDV 276 >gi|116513230|ref|YP_812136.1| DNA polymerase sliding clamp subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] gi|116092545|gb|ABJ57698.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ATCC BAA-365] Length = 375 Score = 282 bits (722), Expect = 7e-74, Method: Composition-based stats. Identities = 107/392 (27%), Positives = 189/392 (48%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L+ + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL KE G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P + ++ ++L Q + R S+++ + R AV+++L+ Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ ++P++GK E + + I FN Y+ + V D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D+ + ++ P+R Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373 >gi|296118605|ref|ZP_06837183.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM 20306] gi|295968504|gb|EFG81751.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM 20306] Length = 398 Score = 282 bits (721), Expect = 7e-74, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 164/399 (41%), Gaps = 29/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V + D+ +G R + K PV ++ A+D LEI E+ I A ++ Sbjct: 11 FRVAKDDLSHAVGWVARNLPTKAAQPVLRAMIFTADDNGLEIAGFDYEVSTRVRIAAEIE 70 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G + V+ L+ DIV + + ++ T+V I G S F L + ++P Sbjct: 71 EPGRVAVAGKLMSDIVSAMPNRPVEIRQED----TKVLIQCGSSRFELPTISLEDYPQLP 126 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 V + V + A ++ L GI I +D+ L ATD RLA Sbjct: 127 VLPEVTGKINPQ-LFSEAVSQVAAAAGKDDTLPMLTGISMSIEGKDVHL--TATDRFRLA 183 Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233 V + ++VP K + E R L S + +++++ + L+ + Sbjct: 184 VRTFEWEPTAEDVKTQLLVPAKTLQETARTLDSHINDPIEIAVGTGDSIAADGLFGLHAD 243 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FP +++P ++ V L++A+ RVS+++ R +++ S Sbjct: 244 NRETTTRMLDADFPTVSHLLPKTHTAMASVEIGPLQEAIRRVSLLT-DRNAQIRMLFSEG 302 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ + D G A E++ + + I FN +L + + I + D VVF Sbjct: 303 EVQLAAGATDTGNAEETIPCAFTGRDELLIAFNPAFLKDGLAVIPT-----DRVVFGFTE 357 Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385 + + + ++ ++ Y+LMP+R+ Sbjct: 358 PSRPAIMIPEPEELPEADEDGNFPTPDTFFTYLLMPVRL 396 >gi|268628309|gb|ACZ13553.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L DS +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|154486347|ref|ZP_02027754.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis L2-32] gi|154084210|gb|EDN83255.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis L2-32] Length = 374 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 161/387 (41%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 1 MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L G+ + I+ G S F +Q PESE+P Sbjct: 61 VDEAGSVLVLGKLLADITKSLPAAKTYLSTD----GSTMTITSGKSTFTMQLMPESEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S V + A++ EE R L GI + K+ +TD R Sbjct: 117 LPVVPTKLGQV-DSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237 LA + + A + + + R ++ + + +V + + Sbjct: 174 LARSSFTWTPEDATISTTALIRGSLLRDMARSLDEHQNVTIDFDADNPSLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + +N L A+ RVS+++ R +++ S +L + Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVA-ERNAPIRMVFSGQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YL++ + IS + V ++ ++ V Sbjct: 293 SAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMTTAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|268628327|gb|ACZ13562.1| DNA polymerase III beta chain [Xenorhabdus stockiae] Length = 276 Score = 282 bits (721), Expect = 8e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLIANCDTLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|294790225|ref|ZP_06755383.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304] gi|294458122|gb|EFG26475.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304] Length = 374 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 170/387 (43%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ S E + R+I + P+ V L+A DGLL++ A E+ I A Sbjct: 1 MKVEIDSSAFSEAVSWTTRVIPARPATPILTGVKLEAADGLLQLSAFDYEVSARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G V LL DI + L G G ++ +S G S F L P+S++P Sbjct: 61 VDESGLAVVQGKLLADIGKALPVGKIYLSTS----GAKLTVSGGQSTFSLPLMPQSDYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + V + A++ EE R L G+ + D K+ +TD R Sbjct: 117 LPQIPDALG-SVDADTFAHAVAQATVAISREESRPVLTGVKMIFS--DGKVQMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLNIESLSM 237 L+ + + + ++ R + + +V V S + + + Sbjct: 174 LSRSTFAWSPSADDIDTSLLVRGTLLRDVARSLDTSQNVVVGFNPDSPTLVGFDNAGKIS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP+ + + ++ L A+ RVS+++ R +++S ++++ + Sbjct: 234 TAQLIDGEFPSVDRLFAADYPIHVVLDKNALIDAIRRVSLVA-ERNAPIRMSFENNQVTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D +A E+++V + P+ I FN YL+E + V + V ++ S +V Sbjct: 293 SAGSADESQAKETLSVDMDGDPITIAFNPAYLVEGLSA-----VYEPYVRMKMISPTKAV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + ++ Y+L+P+R Sbjct: 348 EFNGQQD---QDGEESLDYRYLLVPVR 371 >gi|268628301|gb|ACZ13549.1| DNA polymerase III beta chain [Xenorhabdus mauleonii] Length = 276 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + A G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLAQPHENGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P ++FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPATDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC ++QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLVANCDMIKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|38198902|emb|CAE48513.1| DNA polymerase III, beta chain [Corynebacterium diphtheriae] Length = 405 Score = 282 bits (721), Expect = 9e-74, Method: Composition-based stats. Identities = 95/399 (23%), Positives = 169/399 (42%), Gaps = 29/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 VE+ D+ + R + K T PV V++ A+D LE E+ I A V Sbjct: 18 FRVEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVR 77 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L+ DI+ L + I F E GT+V + G S F L P E+P Sbjct: 78 QPGRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLP 133 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + V ++ + V + A +E L GI I+ E++ L ATD RLA Sbjct: 134 QLPAVTGAIDP-NLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTL--TATDRFRLA 190 Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLNIE 233 + + + +++P K + + R L S V++++ E ++I+ Sbjct: 191 LRRFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHID 250 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + R++D +FPN ++P ++ V + L A+ RV++++ R +++ + D Sbjct: 251 NRQTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVA-ERNAQIRMQFTRD 309 Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ D G A ES+ + I FN YL + + I + VVF Sbjct: 310 EVILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRTS-----RVVFGFTE 364 Query: 353 SNSSVF-IRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385 + I + + + D Y+LMP+R+ Sbjct: 365 PSRPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 403 >gi|260904980|ref|ZP_05913302.1| DNA polymerase III, beta subunit [Brevibacterium linens BL2] Length = 379 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 87/388 (22%), Positives = 163/388 (42%), Gaps = 21/388 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPAS 60 K V R + + + A + + + + PV +L+ A G + + E+ I A Sbjct: 9 KFKVNRDVLADAVTWATKTLPSRPSAPVLTGILITAEAGGTVRLSVFDYEVSSRVEIAAD 68 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++ VS LL DI + L + + ++V+++ S F L + P E+PS Sbjct: 69 VVTPGTVLVSGRLLADISKALPNQDVTLEQID----SKVDVTCSSSRFSLMTMPVGEYPS 124 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S +++ +N V + A + ++ L + I E K+ +ATD +R Sbjct: 125 LPQVPDA-SGTVSAGEFQNAVSQVTIATSKDDTLPILTSVRVEIEGE--KVTLLATDRYR 181 Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237 LAV E + ++ ++ + + ++ + L D ++ +S + I Sbjct: 182 LAVREFTWNPGRPDVSAVALLRGRTLSDVSKSL-GGDVTIGLSNDAGKDLISFTSAGRVT 240 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + L++GE+P +++ P S V LR+AV RVS+++ R ++ +S L + Sbjct: 241 TSLLVEGEYPKVRSLFPDSVPIHAIVETGVLREAVRRVSLVA-ERNTPLRFEVSDGMLTL 299 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D +A E++ P+ + FN Y+ E + I S V F V Sbjct: 300 HAGTGDDAQASEAVEAVLQGDPITVGFNPHYIAEGLAAIES-----PYVNFSFTQPMKPV 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G+ + Y+LMP RI Sbjct: 355 IISGQRDLESTA---DESYRYLLMPTRI 379 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 32/186 (17%), Positives = 74/186 (39%), Gaps = 13/186 (6%) Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F++ VL + V + + L GI E + D Sbjct: 1 MNAEASPLKFKVNRDVLADAVTWATKTLPSRPSAPVLTGILI-TAEAGGTVRLSVFDYE- 58 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 + V+I A + +++V + + +I + L ++D +++ S+ + + S+ Sbjct: 59 -VSSRVEIAADVVTPGTVLVSGRLLADISKALPNQDVTLEQIDSKVDVTCSSSRFSLMT- 116 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKL 295 + GE+P+ +P D V+ + AV +V+I +S +V++ + +K+ Sbjct: 117 MPVGEYPS----LPQVPDASGTVSAGEFQNAVSQVTIATSKDDTLPILTSVRVEIEGEKV 172 Query: 296 CMTVDN 301 + + Sbjct: 173 TLLATD 178 >gi|268628291|gb|ACZ13544.1| DNA polymerase III beta chain [Xenorhabdus miraniensis] Length = 276 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYRGTEMEIGFNVSYVLDV 276 >gi|313122777|ref|YP_004033036.1| DNA polymerase iii, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] gi|312279340|gb|ADQ60059.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp. bulgaricus ND02] Length = 375 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT----GA 56 MK TV+R+ + L + + + IP+ + L + L + S +I I + Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 I V+ GSI V+AHL +IVRKL KE G ++ I+ +++ + S Sbjct: 61 IDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P + ++ ++L Q + R S+++ + R AV+++L+ Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ ++P++GK E + + I FN Y+ + V D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D+ + ++ P+R Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373 >gi|62185060|ref|YP_219845.1| DNA polymerase III subunit beta [Chlamydophila abortus S26/3] gi|62148127|emb|CAH63884.1| DNA polymerase III, beta chain [Chlamydophila abortus S26/3] Length = 366 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 183/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV H+L++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHMLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTIA--NGTATVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA ++++ + I+P KAV EI+++ S+DS + L +++I + + + + Sbjct: 176 LAKTDIEVSLDKSFTGDYIIPIKAVEEIIKLC-SEDSEASIFLDQAKIAVECGNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + L ++ L + +V++ ++ +VK + + +L +T + Sbjct: 235 LLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|325685105|gb|EGD27236.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus delbrueckii subsp. lactis DSM 20072] Length = 375 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 107/392 (27%), Positives = 188/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL KE G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P + ++ ++L Q + R S+++ + R AV+++L+ Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ ++P++GK E + + I FN Y+ + V D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D+ + ++ P+R Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373 >gi|268628277|gb|ACZ13537.1| DNA polymerase III beta chain [Xenorhabdus vietnamensis] Length = 276 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 101/282 (35%), Positives = 164/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMHIGQNLP-SHSVIVPRKGVIELMRLLDGGDNLLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|312193899|ref|YP_004013960.1| DNA polymerase III subunit beta [Frankia sp. EuI1c] gi|311225235|gb|ADP78090.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c] Length = 387 Score = 281 bits (720), Expect = 1e-73, Method: Composition-based stats. Identities = 86/398 (21%), Positives = 164/398 (41%), Gaps = 26/398 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNT----IPVSCHVLLQANDGLLEIKASGPEIEITGA 56 MK VER + E + R + ++ V +LL A L + A E+ Sbjct: 1 MKFRVERDEFTEAVAWTARSLPSRSATATNQQVLMGLLLDATGPGLVVAAFDYEVAAQAT 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + A+V G +L DI ++L +N ++ I+ G++ F LQ+ P Sbjct: 61 LEATVHEEGRALAPGRMLADITKQLPAAPVEVETDDN----KLVITCGNARFTLQTLPVD 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P+ + + V + A ++ L G+ I + L L AT Sbjct: 117 EYPTLPPL-PPITGHIEGGAFGAAVAQVAVAAGKDDTLPVLTGVRLEIEGDTLTL--AAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSL-----SESRIHL 230 D +RLAV + + ++P + + + R L + V ++L E+ Sbjct: 174 DRYRLAVRTLKWSPSSPDAAGVALIPARTLLDTARSLGGGTAQVAIALGTGPSGEALAGF 233 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + RL+DG+FP Y+ ++P S + L +AV RV++++ + V+L+ Sbjct: 234 AGNHRQTTTRLVDGQFPPYRKLLPDSCPLTAQAEKGPLLEAVKRVALVA-PKTAPVRLAF 292 Query: 291 SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S+D L + + +A E++ Y+ +++ FN YL + + + SD+V Sbjct: 293 SADHLRLEAGSHGGEAQASETLPATYDGPDLEVAFNPAYLQDALTAVESDQVEFGFASAE 352 Query: 350 LD--SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + GK D + Y+LMP+++ Sbjct: 353 DAEVAAKKPAILTGKGA-----GDELPDYRYLLMPIQL 385 >gi|229824636|ref|ZP_04450705.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271] gi|229786007|gb|EEP22121.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271] Length = 404 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 98/395 (24%), Positives = 173/395 (43%), Gaps = 27/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M ++ R + L H R I K IPV + L+ L + S I I I Sbjct: 22 MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81 Query: 59 -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V GSI +SA L DIVRKL ++ V ++ G + F +Q Sbjct: 82 QEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQD---HYNVQLTSGKAVFTIQGV 138 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 S++P E + L + K L+ +T F+ + +E R L G+ + D L Sbjct: 139 DSSQYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFH--DGYLTG 196 Query: 174 VATDGHRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATD HRL+ ++ I K +I +P+K V E+ RIL +S+V + ++ + Sbjct: 197 VATDSHRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDD-ESNVTFYVMAQQLVFH 255 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 ++L + RL++G FP+ +IP + + EL VN + QA++R +++ V + V+L + Sbjct: 256 FDNLVIYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKM 315 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S + + V +G++ E ++ + I FN Y+ + + + D + Sbjct: 316 SQGSVALLVQGISIGQSTEELSYDSLEGDDLTIAFNPDYMRDAVKSFG-----DTTIKLG 370 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + +R ++ + +L P+R Sbjct: 371 FISGERPLLLR-----EDKVEEGHNDLIQLLTPIR 400 Score = 39.4 bits (91), Expect = 0.89, Method: Composition-based stats. Identities = 25/189 (13%), Positives = 67/189 (35%), Gaps = 19/189 (10%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 F + N + A+ + L G+ + + +L +D + Sbjct: 20 PTMHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSD--RLILTGSDASISIESV 77 Query: 186 VDIVAQIAKMP-----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 ++ + A++ SI++ + +I+R L + ++V + L +++ Sbjct: 78 IETSQEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQ-DHYNVQLTSGKAVFTIQ 136 Query: 241 LID-GEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSD 293 +D ++P V+P DK + + ++ +++ +S + + LS Sbjct: 137 GVDSSQYP----VLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDG 192 Query: 294 KLCMTVDNP 302 L + Sbjct: 193 YLTGVATDS 201 >gi|300814758|ref|ZP_07095006.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836 str. F0141] gi|300511145|gb|EFK38397.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836 str. F0141] Length = 365 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 178/386 (46%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R D+ + + R I + T+ + +L+++ D + + A+ EI I A Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V+ L +I+RKL + + +NI G+S F + +P+ Sbjct: 61 VEEEGQIVVNGRLFGNIIRKLNNDDIFIKVE----NFNMNIKCGNSEFNISVQNAEGYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F L+ LK+ + +T FA++ +E R G++ ++ + VA DG R Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQD--HINFVALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + I S IVP ++ E+ +IL + ++L + I + Sbjct: 175 MAI--MKINKNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LI G+F +Y+N++ S + V + + A +R S+++ R V+++L+++++ + Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDS 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + ++G E +N + I FN +Y+LE I + + D ++ L + I Sbjct: 293 KS-EIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMET-----DNIILNLTDFINPCII 346 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D + + Y+++P+R+ Sbjct: 347 KEEDNE---------DYIYLVLPVRL 363 >gi|297625206|ref|YP_003686969.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] gi|296920971|emb|CBL55508.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii subsp. shermanii CIRM-BIA1] Length = 386 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 33/401 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKITVER + E + R + + ++P+ +L++A L + + E I A Sbjct: 1 MKITVERDVMAEAVAWVARSLPNRPSVPILAGLLMRATGSQLVLSSFDYETSARITIDAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G VS LL +I R L + N V + G + F LQ P ++P Sbjct: 61 VDEEGEALVSGRLLSEIARSLPNRPARFTANSNH----VELVCGSARFTLQMLPVEDYPQ 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S + S V + A +E+ G+ IN++ +L +ATD +R Sbjct: 117 LPEMPAE-SGTVPSDEFTRSVAQVVVAAGRDELLPVFTGVRIEINDD--RLSLLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 +A+ E+ + S +VP + + E R + ++ V ++LS E I L+ E Sbjct: 174 MALKELTWNPATTQAESAALVPARVLSESARSMGGGEA-VALALSNGIEGEGLIGLSGEG 232 Query: 235 ----LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ RL+DGEFP ++++ + +RV + ++V RVS+++ R +V++ + Sbjct: 233 AGGRRELTTRLLDGEFPKVRHLMDIKPNVTVRVKTEEVLESVKRVSLVA-ERNTSVRMVI 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYN---ECPM---DICFNYKYLLEIIDNISSDEVVDD 344 D++ + D +A E++ N M + FN +YL + + + + Sbjct: 292 EDDRIALDAATGDQAQATEAIEAQVNNVAGGEMAVSAVGFNPRYLTDALSALDT-----P 346 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + ++G + + + + +V+M MR+ Sbjct: 347 YVQFSFTAPGKPCLVQGLPD---VDGEPEADYKHVIMLMRL 384 >gi|228473010|ref|ZP_04057767.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC 33624] gi|228275592|gb|EEK14369.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC 33624] Length = 384 Score = 281 bits (719), Expect = 1e-73, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 17/383 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +I NT+P+ + L + ++ L + AS E I G I Sbjct: 12 MRFIVSSSYLLKKLQIIGGVINSNNTMPILENFLFELSENKLVVSASDLETTIKGVIEVE 71 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 SI V +L D ++ + A +N ++I + + L +EFPS Sbjct: 72 STDSISIAVPYKILIDTLKTFSEQALTFIINDN---NTIDIVSNNGKYTLAYLDSNEFPS 128 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L +L ++ T FA +++R +NG+FF+ EE L ATD H+ Sbjct: 129 VVEIENASQVTLMGDILATAIQSTFFATGNDDLRPIMNGVFFNFTEEG--LIFAATDAHK 186 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L E + + + ++P+K + + IL+ ++ V + +ES + + L R Sbjct: 187 LVKYERQ-DIKSDQPAAFVIPKKPLNLLKGILAGSETQVTIEYNESNAKFSFDQLDYVCR 245 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG +PNY+ VIP N +L VN + + R+S +S +++ + + L + + Sbjct: 246 LIDGTYPNYEAVIPKENPNKLIVNRNLILNSTKRISNFASKATHQMRIKIVGNSLQIFAE 305 Query: 301 NPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + +A E++ Y M+I FN K+ +E++ N+SS DE++ + SN + Sbjct: 306 DIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSS-----DEILLEMSYSNRPGIL 360 Query: 360 RGKDKDSKNNKDNKVNAFYVLMP 382 D D + ++MP Sbjct: 361 TPAD-----GLDEGEKIYMLVMP 378 >gi|330444456|ref|YP_004377442.1| DNA polymerase III subunit beta [Chlamydophila pecorum E58] gi|328807566|gb|AEB41739.1| DNA polymerase III, beta subunit [Chlamydophila pecorum E58] Length = 367 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 186/385 (48%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++++ L+ ++ + IPV HVL++ N+ L A+ + A Sbjct: 1 MKFAISKNELGSLIKKIQSVVPQNTPIPVLSHVLMETNNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G++++ + + ++++L + E+ I+ G S F L S + +FP Sbjct: 61 VYEKGAVSIPSKRFFQLIKELTENNIEISAIAGEMA---QITSGSSCFRLLSMGKQDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK++++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDMQNAVRFTLPTEQLKDMLQRTSFAVSREESRYVLTGVLLSITNGIATI--VGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + ++ + + I+P KAV EI+++ SS+D+ + L + +I + ++ + + Sbjct: 176 LAKIDAEVSLDKSFVGDYIIPIKAVEEIIKLCSSEDTETTIFLDQDKIAVESDNTLLITK 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + + ++ L + +V++ ++ +VK + + +L +T + Sbjct: 236 LLSGEFPDFTPVISTQSSVQFDLHREELIALLKQVALFTNENSHSVKFTFTPGELTLTAN 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 296 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 351 -----------DSTRSLFVIMPMRL 364 >gi|294792396|ref|ZP_06757543.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27] gi|294456295|gb|EFG24658.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27] Length = 370 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 183/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL + E+ G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + + +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDNFAMKELIDLTNYAAATDEDRPIFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ ++ S + + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSENNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E ++V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVSVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|269797071|ref|YP_003310971.1| DNA polymerase III subunit beta [Veillonella parvula DSM 2008] gi|269093700|gb|ACZ23691.1| DNA polymerase III, beta subunit [Veillonella parvula DSM 2008] Length = 370 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 182/386 (47%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL + E+ G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G INE ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ ++ S + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|29840207|ref|NP_829313.1| DNA polymerase III subunit beta [Chlamydophila caviae GPIC] gi|29834555|gb|AAP05191.1| DNA polymerase III, beta chain [Chlamydophila caviae GPIC] Length = 366 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 185/385 (48%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNEVGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + G I+ G S F L S + +FP Sbjct: 61 VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + L+ +++RT FA++ EE RY L G+ I + + V TDG R Sbjct: 118 LPDIQNAIRFTLPAEQLREMLQRTSFAVSREESRYVLTGVLLTIA--NGIVTVVGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +I + + IVP KAV EI+++ S+DS + L +++I + + + + Sbjct: 176 LAKTDTEISLDKSFIGDYIVPIKAVEEIIKLC-SEDSEATIFLDQAKIAVECGNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI + +L ++ L + +V++ ++ +VK + + +L +T + Sbjct: 235 LLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSTRSLFVIMPMRL 363 >gi|313893531|ref|ZP_07827101.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158 str. F0412] gi|313441974|gb|EFR60396.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158 str. F0412] Length = 370 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL + E+ G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ ++ + + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNSEIGMAKEDIAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|269303215|gb|ACZ33315.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae LPCoLN] Length = 366 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + + G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKEL---TEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + ++ + I+P KAV EI+++ S + + L + +I + ++ + + Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T + Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVCLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSASGLFVIMPMRL 363 >gi|238018222|ref|ZP_04598648.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748] gi|237864693|gb|EEP65983.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748] Length = 370 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL + E+ G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ ++ + + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|270158401|ref|ZP_06187058.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968] gi|289163355|ref|YP_003453493.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150] gi|269990426|gb|EEZ96680.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968] gi|288856528|emb|CBJ10323.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150] Length = 367 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 109/386 (28%), Positives = 195/386 (50%), Gaps = 23/386 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 + T+++ D+L L +++K ++ + + L+ +DGLL I A+ EIEI+ + S Sbjct: 3 EFTIKKEDLLPPLLAVAGAVDKKQSLAILSNFFLKLSDGLLNITATDLEIEISAQVACVS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GSITV A DI+R L D N L + + G S+F L + P +P Sbjct: 63 KHSSGSITVPAKKFIDIIRSLDDETSPDVLVNNSL---LTLKQGRSSFKLTTLPAEGYPL 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++E L VL L++ THFAMA +++R +LNG+F + AVATDGHR Sbjct: 120 SEDECNEVELTLPRLVLLKLLQSTHFAMAQQDVRVFLNGLFLDFEPNL--ISAVATDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ K +++P+K V E+LRIL+ D + ++ +S L Sbjct: 178 MAICRYQCSNISDK--KLLLPKKGVQELLRILNYIDDEEILLTAGKSHFKLITRQFVFIS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ FP Y IP + DK + ++C+ L++++ R+ I++ + +AV L L L + Sbjct: 236 KLIEARFPPYTKAIPRNQDKHILIDCSVLKRSLSRIVILAHEKSKAVMLHLQPGMLTLIA 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N + +A+ES+ + I N YLL+++ + + ++ L +++SS+ I Sbjct: 296 NNNEQEEAVESLIAETQGDELKIGLNATYLLDVLSHFG-----EGQIRLSLSNTDSSILI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + Y++MPM+I Sbjct: 351 ESLNDE---------DYQYIIMPMKI 367 >gi|282881769|ref|ZP_06290427.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B] gi|281298379|gb|EFA90817.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B] Length = 365 Score = 280 bits (718), Expect = 2e-73, Method: Composition-based stats. Identities = 86/386 (22%), Positives = 178/386 (46%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + R D+ + + R I + T+ + +L+++ D + + A+ EI I A Sbjct: 1 MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V+ L +I+RKL + + +NI G+S F + +P+ Sbjct: 61 VEEEGQIVVNGRLFGNIIRKLNNDDIFIKVE----NFNMNIKCGNSEFNISVQNAEGYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F L+ LK+ + +T FA++ +E R G++ ++ + VA DG R Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQD--YINFVALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + I S IVP ++ E+ +IL + ++L + I + Sbjct: 175 MAI--MKINKNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 LI G+F +Y+N++ S + V + + A +R S+++ R V+++L+++++ + Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDS 292 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + ++G E +N + I FN +Y+LE I + + D ++ L + I Sbjct: 293 KS-EIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMET-----DNIILNLTDFINPCII 346 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +D + + Y+++P+R+ Sbjct: 347 KEEDNE---------DYIYLVLPVRL 363 >gi|290953774|ref|ZP_06558395.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica URFT1] gi|295312852|ref|ZP_06803583.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica URFT1] Length = 351 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 115/369 (31%), Positives = 209/369 (56%), Gaps = 22/369 (5%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIV 78 + K+T+P+ +L ++ L+I AS + EI+ I S + + ++A +Y+IV Sbjct: 3 SVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIV 62 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELASSVL 137 R L + + I F +V I +S F L S +P SF+L+ Sbjct: 63 RSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPLIDSNINEQASFDLSQQDF 119 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGHR+++ E I +++ S Sbjct: 120 HHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSAS 177 Query: 198 -IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 I+P+KA+ E+ +I+ + ++K+ L ++ + + + +LIDG +P+YQ VIP + Sbjct: 178 QSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKN 237 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 N K L V+ + ++ R SI+++ + + V+L++S ++L ++ +NPD KA + + V YN Sbjct: 238 NTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYN 297 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + PM+ICFNYKYLL+II+ +S ++ + LD+ N S + KD K N+ Sbjct: 298 DQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSALV----------KDEKDNS 342 Query: 377 FYVLMPMRI 385 +++MPM+I Sbjct: 343 LFIIMPMKI 351 >gi|212715152|ref|ZP_03323280.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM 16992] gi|212661833|gb|EEB22408.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM 16992] Length = 386 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ V L+A DG L++ A I I A Sbjct: 13 MKVEVNSQALADAVAWTTRVIDARPASPILAGVRLEAIDGTLQLSAFNYAISARHHIEAG 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GS+ V LL DI + L G+ + I+ G S F +Q P++E+P Sbjct: 73 VDEAGSVLVLGKLLADITKSLPAAKTYLSTD----GSTMTITSGKSTFTMQLMPDAEYPD 128 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 A + V + A++ EE R L GI + K+ +TD R Sbjct: 129 LPVIPSKLGQVDAQT-FTQAVTQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 185 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237 L+ + + + +V + ++ R L + V +E+ L E+ Sbjct: 186 LSRSSFTWTPENPDTNATALVRGALLRDVARSLDEHQNIVVDFDTENPSLLGFENAGRVS 245 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + +N +L A+ RVS+++ R ++++ +S +L + Sbjct: 246 TSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVA-ERNAPIRMAFTSQELTL 304 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T D +A E +++ + + + FN YL+E + I + V ++ ++ V Sbjct: 305 TAGTADEAQAKEILDIDMDGEDITVAFNPTYLIEGLSAI-----AEPFVRMKMTTAVKPV 359 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + ++ + ++ Y+L+PMR Sbjct: 360 EFNGQQE---SDSEESMDYRYLLVPMR 383 >gi|268628281|gb|ACZ13539.1| DNA polymerase III beta chain [Xenorhabdus poinarii] gi|268628283|gb|ACZ13540.1| DNA polymerase III beta chain [Xenorhabdus poinarii] gi|268628285|gb|ACZ13541.1| DNA polymerase III beta chain [Xenorhabdus poinarii] Length = 276 Score = 280 bits (717), Expect = 2e-73, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWKSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L ++ +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGENPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVNDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEILDVSYQGTEMEIGFNVSYVLDV 276 >gi|268628311|gb|ACZ13554.1| DNA polymerase III beta chain [Xenorhabdus bovienii] Length = 276 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F EE+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 VATDGHRLAV ++I + S+IVPRK V E++R+L DS +++ + + I Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|294794202|ref|ZP_06759338.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44] gi|294454532|gb|EFG22905.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44] Length = 370 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 181/386 (46%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL + E+ G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ ++ S + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVILS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|326335580|ref|ZP_08201767.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp. oral taxon 338 str. F0234] gi|325692346|gb|EGD34298.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp. oral taxon 338 str. F0234] Length = 373 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 175/383 (45%), Gaps = 17/383 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V S +L+ L +I NT+P+ + L + + L + AS E I G I Sbjct: 1 MRFIVSSSYLLKKLQIIGGVINTNNTMPILENFLFELSGNKLVVSASDLETTIKGVIEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 SI V +L + ++ + A +N V+I + + L +EFP+ Sbjct: 61 SSDTVSIAVPYKILIETLKTFTEQALTFIINDN---NTVDIVSNNGKYTLAYLDSAEFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L +L ++ T FA +++R +NG+FF++ E+ L ATD H+ Sbjct: 118 IVEIENANHVSLMGDILATAIQSTLFATGNDDLRPIMNGVFFNLTEDA--LIFAATDAHK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L E + S ++P+K + + IL+ +S V + +ES + + L R Sbjct: 176 LVKYERQ-DIKSEYPASFVIPKKPLNLLKGILAGSESEVTIEYNESNAKFSFDQLDYVCR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LIDG +PNY+ VIP N +L VN L + R+S +S +++ + + L + + Sbjct: 235 LIDGNYPNYEAVIPKENPNKLIVNRNLLMNSTKRISNFASKSTHQMRVKIVGNSLQIFAE 294 Query: 301 NPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + +A E++ Y M+I FN K+ +E++ N+SS DEV+ + SN + Sbjct: 295 DIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSS-----DEVLLEMSYSNRPGIL 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMP 382 D D + ++MP Sbjct: 350 TPAD-----GLDEGEKVYMLVMP 367 >gi|268628263|gb|ACZ13530.1| DNA polymerase III beta chain [Xenorhabdus kozodoii] gi|268628265|gb|ACZ13531.1| DNA polymerase III beta chain [Xenorhabdus kozodoii] Length = 276 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMRARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATDGHRLAV ++I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TIATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFTFTSKLVDGRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYPGTEMEIGFNVSYILDV 276 >gi|257062756|ref|YP_003142428.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM 20476] gi|256790409|gb|ACV21079.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM 20476] Length = 365 Score = 280 bits (717), Expect = 3e-73, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 167/387 (43%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +S+ L L + ++T+PV V + A L ++ + + I + A Sbjct: 1 MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + LL DIV+ L D A + +E +S ++F L + +FPS Sbjct: 61 VEDEGMCVIPQKLLSDIVKNLPDAAITVDVDD----SEATVSCDKTSFTLHTLIPDDFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + V++ A + ++ R L G+ E + VATD +R Sbjct: 117 FPEVNIDNQITVPFKQFSSAVKKVAKAASKDQSRAVLTGVLLRTTPEG--MSIVATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + + +V V E+ L ++ + LS +++ M R Sbjct: 175 LAVCNLKFDS-AGEEFEALVTSSFVLEVAS-LPEVQETIDICLSANQVMFRFGDTVMVNR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMT 298 I+G++P Y+ +I S + + L AV RV +MSS +K ++ ++ Sbjct: 233 RIEGKYPAYEKLIAGSYTTKTCYTTSALITAVKRVGLMSSAAS-PIKFDINEATKNTVLS 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ ++G A E ++ N ++I N++Y+++ + +IS+ D V F S Sbjct: 292 TNSQEIGTASEVVSCEVNGENVEIALNHQYIIDGLSSIST-----DHVFFETQGSMKPGV 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + + + Y+LMP+R+ Sbjct: 347 FRSGEGE---------DFLYLLMPVRL 364 >gi|268628323|gb|ACZ13560.1| DNA polymerase III beta chain [Xenorhabdus innexi] gi|268628325|gb|ACZ13561.1| DNA polymerase III beta chain [Xenorhabdus innexi] Length = 276 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ T+ A +DI R L DGA+IS + G + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 V+TDGHRLAV ++I Q S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TVSTDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKILEANCDTLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276 >gi|303230644|ref|ZP_07317394.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-049-V-Sch6] gi|302514699|gb|EFL56691.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-049-V-Sch6] Length = 373 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 185/387 (47%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I ++++ + + ++ + K + + + + + +E++ + E+ I I A Sbjct: 1 MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V++ +++RKL E+ G + I+ G S F L + +F Sbjct: 61 ILEPGTLVVASRYFQELIRKLPGETIQLSKLED--GNTLKITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVATDGH 179 ++ + S +K L++ T++A A+++ R G I + D ++ VATD H Sbjct: 119 VEQIHDQDYVNIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVATDTH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 R+AV +V I +I+P KA+ E+ R+L + + S +K+ + ++I ES+ + Sbjct: 179 RMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESIYII 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297 RLI+G +P Y+ VIP D V+ AVDRVS+++ ++ S +++ + Sbjct: 239 SRLIEGTYPEYEKVIPAQFDSSAVVDRKEFAGAVDRVSLLAKDMSYNVIRYDWSEEQVTL 298 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N ++G A E + V + P I FN +Y+ +I+ + + D + L N V Sbjct: 299 SSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTG-----DNIHMYLK-QNGPV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 353 VIR---------QDNNPNYTYVVTPVR 370 >gi|303228573|ref|ZP_07315400.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-134-V-Col7a] gi|302516752|gb|EFL58667.1| DNA polymerase III, beta subunit [Veillonella atypica ACS-134-V-Col7a] Length = 373 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 187/387 (48%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I ++++ + + ++ + K + + + + + +E++ + E+ I I A Sbjct: 1 MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V++ +++RKL + + E G + I+ G S F L + +F Sbjct: 61 ILEPGTLVVASRYFQELIRKLPG--ETIQLSKPEDGNTLKITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVATDGH 179 ++ + S +K L++ T++A A+++ R G I + D ++ VATD H Sbjct: 119 VEQIHDQDYVNIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVATDTH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 R+AV +V I +I+P KA+ E+ R+L + + S +K+ + ++I ES+ + Sbjct: 179 RMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESIYII 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297 RLI+G +P Y+ VIP D V+ + AVDRVS+++ ++ S +++ + Sbjct: 239 SRLIEGTYPEYEKVIPAQFDSSAVVDRKDFAGAVDRVSLLAKDMSYNVIRYDWSEEQVTL 298 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N ++G A E + V + P I FN +Y+ +I+ + + D + L N V Sbjct: 299 SSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTG-----DNIHMYLK-QNGPV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 353 VIR---------QDNNPNYTYVVTPVR 370 >gi|15835873|ref|NP_300397.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae J138] gi|33241682|ref|NP_876623.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae TW-183] gi|14194707|sp|Q9Z8K0|DPO3B_CHLPN RecName: Full=DNA polymerase III subunit beta gi|8978712|dbj|BAA98548.1| DNA polymerase III (beta chain) [Chlamydophila pneumoniae J138] gi|33236191|gb|AAP98280.1| DNA-directed DNA polymerase III beta chain [Chlamydophila pneumoniae TW-183] Length = 366 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + + G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKEL---TEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + ++ + I+P KAV EI+++ S + + L + +I + ++ + + Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T + Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSASGLFVIMPMRL 363 >gi|15618258|ref|NP_224543.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae CWL029] gi|4376617|gb|AAD18487.1| DNA Polymerase III (beta chain) [Chlamydophila pneumoniae CWL029] Length = 366 Score = 280 bits (716), Expect = 3e-73, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + + G I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKEL---TEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + ++ + I+P KAV EI+++ S + + L + +I + ++ + + Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEAAIFLDQDKIAVECDNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T + Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSASGLFVIMPMRL 363 >gi|268628271|gb|ACZ13534.1| DNA polymerase III beta chain [Xenorhabdus griffiniae] Length = 276 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS +++ + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELDSD---RILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L S LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQSTLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 +ATDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TIATDGHRLAVCSMSIGQDLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYILDV 276 >gi|167041927|gb|ABZ06665.1| putative DNA polymerase III beta subunit, N-terminal domain protein [uncultured marine microorganism HF4000_137B17] Length = 371 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 124/388 (31%), Positives = 225/388 (57%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ R+ L+ L HA IIE+K T+P+ ++L++A D + I A+ +I T IP Sbjct: 1 MEFTISRNTFLKSLSHAYGIIEKKTTLPILSNILIEAKDSKIRITATDLDIIYTEEIPLQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS T SA ++YDI+RKL+ ++ F + ++ + G+S F L FP Sbjct: 61 ELKKEGSTTTSASIIYDILRKLEPNTKVELFL--QSANKLKLVSGNSKFNLLCLSPDNFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177 E+ +FE++S+ + L+ +T +++ +E R+YLNGI+ H + K L +V+TD Sbjct: 119 LADEDIKQKTFEISSNKMLKLLNKTKISISNDETRHYLNGIYLHKINIENKSFLSSVSTD 178 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 HRL+ + ++I + SII+P+K + +++ +L S++K+S ++S+I I++ + Sbjct: 179 SHRLSSSRLEIDSNT-DFESIILPKKTIFQLISLLEQSTSAIKISNNKSKIKFEIDNGVL 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 ++IDG FP+Y V+P N K L++ + +++RV+ +SS R + +K+ +S D L + Sbjct: 238 ISKVIDGRFPDYSKVVPIDNVKILQIKLNEFKNSIERVTTVSSDRKEGLKMKISKDFLQL 297 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +V++P+ G+ IES+N +N MDI FN +YL++I I +D ++ L + S V Sbjct: 298 SVNSPNSGEGIESINAIFNSDDMDISFNSRYLIDIASQIE-----NDLIIINLKDAASPV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + N+F+V+MPM+I Sbjct: 353 LIKDM---------SDKNSFHVVMPMKI 371 >gi|16752700|ref|NP_444967.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae AR39] gi|7189343|gb|AAF38262.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae AR39] Length = 366 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R+++ L+ ++ + IPV HVL++ + L A+ + A Sbjct: 1 MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I++ + + +V++L + + E+ I+ G S F L S + +FP Sbjct: 61 VYEKGAISIPSKRFFQLVKELTEANLEISYSAGEMA---QITSGSSCFRLLSMEKEDFPM 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + F L + LK +++RT FA++ EE RY L G+ I + V TDG R Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + ++ + I+P KAV EI+++ S + + L + +I + ++ + + Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLITK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GEFP++ VI ++ +L ++ L + +V++ ++ +VK S +L +T + Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +G+ SM V Y+ ++I FN + L+I+ + D+ V + S + I Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +V+MPMR+ Sbjct: 350 -----------DSASGLFVIMPMRL 363 >gi|310286522|ref|YP_003937780.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17] gi|311063461|ref|YP_003970186.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum PRL2010] gi|309250458|gb|ADO52206.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17] gi|310865780|gb|ADP35149.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum PRL2010] Length = 374 Score = 279 bits (715), Expect = 4e-73, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 168/387 (43%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + P+ + L+A DG L++ A EI I A Sbjct: 1 MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEPGTALVLGKLLADITKSLPAEKTYLSTD----GSTMTINSGKSTFTMQLMPDAEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V + A++ EE R L G+ + + K+ +TD R Sbjct: 117 LPVVPAKLGQV-DAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237 L+ A Q + + R + + ++ R L + V +++ L E+ Sbjct: 174 LSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + + ++ L A+ RV++++ R +++ S ++ + Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVA-ERNAPIRMVFSGQEVTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YL+E + I + V ++ ++ V Sbjct: 293 SAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAI-----TEPFVRMKMTTAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|169830221|ref|YP_001716203.1| DNA polymerase III subunit beta [Candidatus Desulforudis audaxviator MP104C] gi|169637065|gb|ACA58571.1| DNA polymerase III, beta subunit [Candidatus Desulforudis audaxviator MP104C] Length = 389 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 95/405 (23%), Positives = 174/405 (42%), Gaps = 39/405 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-----LLEIKASGPEIEITG 55 M+ R +L + R + +K+ + +L +A G + + S ++ I Sbjct: 1 MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAGEAGQQGVSLTGSNMDLTIRR 60 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 IPA V V G++ + A L +IVR+L D + V +++G + L + Sbjct: 61 IIPAGVTVSGAVVLPARQLAEIVRRLPDVPV--SITADHQKNSVELTYGRARALLNGYSA 118 Query: 116 SEFPSTKE-------------EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162 +EFP + S V NL R +A T+++R G+ Sbjct: 119 AEFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFTGVLL 178 Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILS-SKDSSVK 220 I+E +++ AVATD HRLA+ VD + +IV +A+GE++R+LS +++ + Sbjct: 179 EIDEGEIR--AVATDTHRLAMHRVDYEGEPENRKMQVIVSGRALGELVRVLSQAEEEQFE 236 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR-VNCTNLRQAVDRVSIMS 279 V+++E+ I ++ + RLI G +P+Y+ VIP + + + L Q V+R + ++ Sbjct: 237 VTIAENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVERAATLA 296 Query: 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + L L L +T + + G E + V ++I FN KYL E + S Sbjct: 297 QDGSPVINLHLGQGLLGVTAQS-EAGSIHEEIPVELAGQELEISFNAKYLEEALRWCEST 355 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +++ D IR +++P+R Sbjct: 356 QLILD-----FHGPVGPAIIRPLGD--------GDTYLALVLPVR 387 >gi|229816227|ref|ZP_04446537.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM 13280] gi|229808235|gb|EEP44027.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM 13280] Length = 367 Score = 279 bits (715), Expect = 5e-73, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 182/388 (46%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + + + + I +T+P+ VL++A DG+LE + S I I I A Sbjct: 1 MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + + +L +IV+ L D E +V I+ S F L + +FP Sbjct: 61 VDEEGQVVIPCKMLSNIVKTLPDAPVSFELAE----RQVTITCERSTFRLNTLDAGDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S EL +++L +V R +T++ R LNG++ + ++L VATD +R Sbjct: 117 FPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSYR 174 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + + VP A + L ++ S+ + +++++ + + Sbjct: 175 LAVCDTQVETSSLEGSFELNVPADAFNDAL-AITGGQGSILIGSTDTQVVFVAGNTTYVA 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCM 297 R I+G +PNY+ ++P S ++++ L A+ RVS ++ AVK +S + ++ + Sbjct: 234 RRIEGMYPNYKALLPASCATTVKIDVAALTSALKRVSTVA-QANSAVKFDISVETGQMML 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D A ++ V I FNY Y+ ++ +S ++ E+ L S N + Sbjct: 293 SAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQAG 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K+N Y++MP+RI Sbjct: 349 VFKSYD---------KINYLYLVMPVRI 367 >gi|282848765|ref|ZP_06258160.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745] gi|282581551|gb|EFB86939.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745] Length = 370 Score = 279 bits (714), Expect = 5e-73, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 181/386 (46%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT ++++ + + ++ + K + + + + +G +E++ + E+ I I Sbjct: 1 MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V + +++RKL + E+ G + I+ G S F L + +F Sbjct: 61 IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + S +K L++ T++A AT+E R G I E ++ + VATD HR Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +AV ++ I I+P K + E+ R+L + + + + + + ++I N ES+ + Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 RLI+G +P Y+ VIP D ++ AVDRVS+++ ++ S + ++ Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G A E + V + P I FN +Y+ +I+ + + D + N V Sbjct: 297 TQNTEIGMAKEDVVVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR +DN N YV+ P+R Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367 >gi|154492231|ref|ZP_02031857.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC 43184] gi|154087456|gb|EDN86501.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC 43184] Length = 374 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 95/371 (25%), Positives = 178/371 (47%), Gaps = 11/371 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ V + +L L ++I KN++P+ L L I AS E + ++ Sbjct: 1 MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLVTSVDVM 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G VSA +L D +++L + ++ L ++ +G NF Q ++ Sbjct: 61 NAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK-GDTYPQ 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S + + +L N + R+ FA A +E+R +NGI+F I+ +DL VA+DGH Sbjct: 120 QKPLNENAISIMMDAQMLLNGISRSLFATADDELRPVMNGIYFDIHTDDLTF--VASDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +L V ++ + + S I+P+K + +LS + V + ++ ++N + M Sbjct: 178 KL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEGEMVSIKFDDNNAYINCANFEMVC 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G +PNY +VIP N ++ ++ + A+ RVS+ S+ VKL L +++ ++ Sbjct: 237 RLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLQLKENEMLVSA 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D A E + ++ + I F YL+EI+ NI+S +EV+ L + + Sbjct: 297 QDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINS-----EEVILELADPSRAGL 351 Query: 359 IRGKDKDSKNN 369 I + + + Sbjct: 352 IVPSENEENED 362 >gi|225848547|ref|YP_002728710.1| DNA polymerase III subunit beta [Sulfurihydrogenibium azorense Az-Fu1] gi|225643105|gb|ACN98155.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium azorense Az-Fu1] Length = 362 Score = 279 bits (713), Expect = 6e-73, Method: Composition-based stats. Identities = 111/385 (28%), Positives = 192/385 (49%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V++ + + I E+K +PV + LL+A +G L I+ + E+ T I A Sbjct: 1 MDIIVDKKSFQDAVKKV--IAEKKAALPVLTNFLLKAENGKLIIQGTDLEVFTTYWINAD 58 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ V+A L DI + L + +N + I G + + L + +FP Sbjct: 59 VKEEGSVCVNAKKLTDISKVLPAASVSLTLDKNN----LKIVSGKTKYSLPTTDPEDFPV 114 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E + ++ L + +T +A + +E R+ LNG+ F E+ L VATDGHR Sbjct: 115 FEEFPADLAVRVSGDTLLKGITKTVYAASKDESRFALNGVCFSFVEK--YLDFVATDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + ++ + IVP+KA+ EI +++S D V+V++S S I +S R Sbjct: 173 LALYKGEVSGGSIE-GKYIVPQKALSEIKKLVSEYD-DVEVAISGSSIFFKGSDWMLSAR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FP+Y VIP S + E+ V ++ +V RV + + +KL+L +KL ++ Sbjct: 231 LLEGVFPDYTQVIPKSFNIEVEVLKGDILDSVKRVVVAEESDAKPIKLTLKENKLIISTP 290 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + A + +++ YN+ +I FN KY+++ I DE+ D ++V + + +S I Sbjct: 291 TVEDAYAEDEIDIEYNQEEFEIGFNGKYIIDAI-----DEIEDSKIVLKFINKDSQTVIV 345 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 KD+ V+MPM I Sbjct: 346 PKDESEP--------YLAVVMPMNI 362 >gi|268628267|gb|ACZ13532.1| DNA polymerase III beta chain [Xenorhabdus kozodoii] Length = 276 Score = 279 bits (713), Expect = 7e-73, Method: Composition-based stats. Identities = 98/271 (36%), Positives = 162/271 (59%), Gaps = 6/271 (2%) Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+ TV A +DI R L DGA+IS + G + + G S F L + P ++FP+ Sbjct: 12 HEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPATDFPNL 68 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ +ATDGHRL Sbjct: 69 DDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRL 126 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 AV ++I + S+IVPRK V E++R+L D+ +++ + + I ++ + +L Sbjct: 127 AVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKL 185 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ LS ++L +T +N Sbjct: 186 VDGRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANN 245 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 P+ +A E ++V Y M+I FN Y+L++ Sbjct: 246 PEQEEAEEIVDVSYQGTEMEIGFNVSYILDV 276 >gi|325124857|gb|ADY84187.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. bulgaricus 2038] Length = 375 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 108/392 (27%), Positives = 188/392 (47%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV+R+ + L + + + IP+ + L + L + S +I I + P S Sbjct: 1 MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPIS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ GSI V+AHL +IVRKL KE G ++ I+ +++ + S Sbjct: 61 DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 +P E SF L S L+ L+ +T FA++TEE R L G+ F +K AVAT Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D HRL+ VDI A ++ S+I+P K + E+ +I+ D +KV L +S+I E+LS Sbjct: 175 DSHRLSQRIVDIAAGPSEGLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293 RL++G +P+ ++P + ++ ++L Q + R S+++ + R AV+++L+ Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ ++P++GK E + M I FN Y+ + V D V+ Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDMTISFNPDYMAAALRA-----SVTDSVIINFTE 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D+ + ++ P+R Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373 >gi|268628269|gb|ACZ13533.1| DNA polymerase III beta chain [Xenorhabdus ehlersii] Length = 276 Score = 278 bits (712), Expect = 9e-73, Method: Composition-based stats. Identities = 98/282 (34%), Positives = 165/282 (58%), Gaps = 7/282 (2%) Query: 52 EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 E+ + G+ TV A +DI R L DGA+IS +++ + + G S F L Sbjct: 1 EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELDSD---RILVRSGRSRFSL 57 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + P S+FP+ + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ Sbjct: 58 STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 ++TDGHRLAV + I + S+IVPRK V E++R+L D+ +++ + + I Sbjct: 118 --TISTDGHRLAVCSMSIGQDLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ + +L+DG FP+Y+ V+P + DK L NC L+QA R +I+S+ + + V++ L Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 S ++L +T +NP+ +A E ++V Y M+I FN Y+L++ Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYILDV 276 >gi|218261816|ref|ZP_03476531.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii DSM 18315] gi|218223762|gb|EEC96412.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii DSM 18315] Length = 374 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 177/371 (47%), Gaps = 11/371 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ V + +L L ++I KN++P+ L L I AS E + ++ Sbjct: 1 MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLVTSVDVM 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G VSA +L D +++L + ++ L ++ +G NF Q ++ Sbjct: 61 NAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK-GDTYPQ 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S + + +L N + R FA A +E+R +NGI+F I+ +DL VA+DGH Sbjct: 120 QKPLNDNAISIMMDAQMLLNGISRALFATADDELRPVMNGIYFDIHTDDLTF--VASDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +L V ++ + + S I+P+K + +LS ++ + + ++ ++N + M Sbjct: 178 KL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEEGMISIKFDDNNAYVNCANFEMVC 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G +PNY +VIP N ++ ++ + A+ RVS+ S+ VKL L ++ ++ Sbjct: 237 RLIEGRYPNYNSVIPQENPFKVTIDRVSFLNALKRVSVFSNPASSLVKLQLKESEMLVSA 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D A E + ++ + I F YL+EI+ NI+S +EV+ L + + Sbjct: 297 QDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINS-----EEVILELADPSRAGL 351 Query: 359 IRGKDKDSKNN 369 I + + + Sbjct: 352 IVPSENEENED 362 >gi|224283953|ref|ZP_03647275.1| DNA polymerase III subunit beta [Bifidobacterium bifidum NCIMB 41171] gi|313141105|ref|ZP_07803298.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] gi|313133615|gb|EFR51232.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171] Length = 374 Score = 278 bits (711), Expect = 1e-72, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 168/387 (43%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ + + + + R+I+ + P+ + L+A DG L++ A EI I A Sbjct: 1 MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEPGTALVLGKLLADITKSLPAEKTYLSTD----GSTMTINSGKSTFTMQLMPDAEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V + A++ EE R L G+ + + K+ +TD R Sbjct: 117 LPVVPAKLGQV-DAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237 L+ A Q + + R + + ++ R L + V +++ L E+ Sbjct: 174 LSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + + ++ L A+ RV++++ R +++ S ++ + Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVA-ERNAPIRMVFSGQEVTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YL+E + I + V ++ ++ V Sbjct: 293 SAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAI-----TEPFVRMKMITAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|308095428|ref|ZP_07663276.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308087823|gb|EFO37518.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466] Length = 287 Score = 277 bits (710), Expect = 1e-72, Method: Composition-based stats. Identities = 92/284 (32%), Positives = 168/284 (59%), Gaps = 7/284 (2%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++L++ + +L + A+ E+E+ + D GSITV + DI R L Sbjct: 4 RPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEAGSITVPSRKFLDICRGLP 63 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 D A I+F E G V + G S F L + P ++FP+ ++ + L+ + L+ L++ Sbjct: 64 DDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLID 120 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 +T F+MA +++RYYLNG+ F I + L +VATDGHR+AV++ + A A+ IIVPR Sbjct: 121 KTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGHRMAVSQTQLGADFAQ-KQIIVPR 177 Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262 K V E+++++ + + V + + S + + + + +L+DG FP+Y+ V+P +K L Sbjct: 178 KGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLI 237 Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 +C LRQA R +I+S+ + + V+++L+ ++ +T +NP+ K Sbjct: 238 ASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQKK 281 >gi|167010109|ref|ZP_02275040.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. holarctica FSC200] Length = 344 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 115/364 (31%), Positives = 208/364 (57%), Gaps = 22/364 (6%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83 K+T+P+ +L ++ L+I AS + EI+ I S + + ++A +Y+IVR L + Sbjct: 1 KSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNE 60 Query: 84 GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELASSVLKNLVE 142 + I F +V I +S F L S +P SF+L+ +++ Sbjct: 61 NSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPLIDSNINEQASFDLSQQDFHHIIS 117 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVP 201 + F+MA ++ RY+LNG+F+ IN L+ AV+TDGHR+++ E I +++ S I+P Sbjct: 118 KVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSASQSIIP 175 Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261 +KA+ E+ +I+ + ++K+ L ++ + + + +LIDG +P+YQ VIP +N K L Sbjct: 176 KKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTKLL 235 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321 V+ + ++ R SI+++ + + V+L++S ++L ++ +NPD KA + + V YN+ PM+ Sbjct: 236 AVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQPME 295 Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 ICFNYKYLL+II+ +S ++ + LD+ N S + KD K N+ +++M Sbjct: 296 ICFNYKYLLDIINVLS-----EETMSIYLDNPNMSALV----------KDEKDNSLFIIM 340 Query: 382 PMRI 385 PM+I Sbjct: 341 PMKI 344 >gi|210634751|ref|ZP_03298279.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279] gi|210158691|gb|EEA89662.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279] Length = 367 Score = 277 bits (710), Expect = 2e-72, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 181/388 (46%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV +S + + + + I +T+P+ VL++A DG+LE + S I I I A Sbjct: 1 MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + + +L +IV+ L D E +V I+ S F L + +FP Sbjct: 61 VDEEGQVVIPCKMLSNIVKTLPDAPVEFELSE----RQVTITCERSAFRLNTLDAGDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S EL +++L +V R +T++ R LNG++ + ++L VATD +R Sbjct: 117 FPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSYR 174 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + + VP A + L ++ S+ + +++++ + + Sbjct: 175 LAVCDTQVETSTLEGSFELNVPADAFNDAL-AITGGQGSILIGSTDTQVVFVAGNTTYVA 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCM 297 R I+G +PNY+ ++P + ++++ L A+ RVS ++ AVK +S + + + Sbjct: 234 RRIEGVYPNYKALLPAACATTVKIDVAALTSALKRVSTVA-QANSAVKFDISTETGSMVL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D A ++ V I FNY Y+ ++ +S ++ E+ L S N + Sbjct: 293 SAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQAG 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D K+N Y++MP+RI Sbjct: 349 VFKSYD---------KINYLYLVMPVRI 367 >gi|150007344|ref|YP_001302087.1| DNA polymerase III subunit beta [Parabacteroides distasonis ATCC 8503] gi|255014025|ref|ZP_05286151.1| DNA polymerase III beta chain [Bacteroides sp. 2_1_7] gi|256839635|ref|ZP_05545144.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13] gi|262382081|ref|ZP_06075219.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B] gi|298375332|ref|ZP_06985289.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] gi|301310654|ref|ZP_07216593.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3] gi|149935768|gb|ABR42465.1| DNA polymerase III beta chain [Parabacteroides distasonis ATCC 8503] gi|256738565|gb|EEU51890.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13] gi|262297258|gb|EEY85188.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B] gi|298267832|gb|EFI09488.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] gi|300832228|gb|EFK62859.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3] Length = 374 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 93/371 (25%), Positives = 174/371 (46%), Gaps = 11/371 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ V + +L L ++I KN++P+ L L + AS E + ++ Sbjct: 1 MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNTLTVTASDAETRLVTSVDVM 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G VSA +L D +++L + + L ++ +G NF Q ++ Sbjct: 61 NAQGAGLFAVSAKILLDPLKELPEQPLTFDINDENLEIFIHFQNGKYNFIGQK-GDTYPQ 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S + + +L N + R+ FA A +E+R +NG++F I+ +DL VA+DGH Sbjct: 120 QKPLNDNAISISMDAQMLLNGISRSLFATADDELRPVMNGVYFDIHTDDLTF--VASDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +L V ++ + + S I+P+K + +L+ + V + ++ ++ + M Sbjct: 178 KL-VRLRNLAVKSPERASFILPKKPANLLKNLLAKESEQVLIKFDDNNAYITCTNFEMVC 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G +PNY +VIP N ++ ++ + A+ RVS+ S+ VKL L + ++ Sbjct: 237 RLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLHLKDSLITVSA 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D A E + ++ + I F YL+EI+ NISS +EVV L + + Sbjct: 297 QDIDFSTSAEERIVCQFDGTELSIGFKATYLIEILGNISS-----EEVVLELADPSRAGL 351 Query: 359 IRGKDKDSKNN 369 I + D + Sbjct: 352 IVPSENDEDED 362 >gi|328954616|ref|YP_004371949.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2] gi|328454940|gb|AEB06134.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2] Length = 367 Score = 277 bits (709), Expect = 2e-72, Method: Composition-based stats. Identities = 98/388 (25%), Positives = 176/388 (45%), Gaps = 24/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV ++ + E L + + +T+P+ VL+ A DG+LE + S I I I A Sbjct: 1 MEFTVSQNALSEALAIVSKGVASASTLPILSGVLITAGDGVLEFQTSNYTISIRHRIAAH 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ V L +I + L D E +VNI+ S F L + ++FP Sbjct: 61 VEKDGSLVVPCKTLSNITKTLPDAPVRFQLVE----RQVNITCEKSTFRLNTLDAADFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EL S L ++V R +T++ R L G+ + ++L VATD R Sbjct: 117 FPTYALESAVELPSRTLTDMVARVWRVTSTDKARPILGGVHMTVENNTIRL--VATDSFR 174 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV + + + VP A + L I+ S+ ++ V +++++ + Sbjct: 175 LAVCDTQVETSSLEGSFELNVPADAFNDALTIM-SEQQTILVGATDTQVVFEAGDTTYVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297 R I+G +PNY +IP S ++++ + A+ RVS ++S AVK ++ L + Sbjct: 234 RRIEGVYPNYNQLIPDSCTTSVKIDVEAITAALKRVSAIAS-TNPAVKFAIDVERGSLAL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + D A E ++V I FNY Y+ ++ ++ ++ E+ L + + Sbjct: 293 SAISSDQDLAQEIIDVEAEGESGVIAFNYHYIFGCLNVLAKEQ----EISLELKNYTQAG 348 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+N Y++MP+RI Sbjct: 349 VFKS---------YGKINYLYLVMPVRI 367 >gi|306843604|ref|ZP_07476205.1| DNA polymerase III, beta subunit [Brucella sp. BO1] gi|306276295|gb|EFM57995.1| DNA polymerase III, beta subunit [Brucella sp. BO1] Length = 275 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 124/289 (42%), Positives = 179/289 (61%), Gaps = 16/289 (5%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 +++ G S+F LQ P+S+FP + +SF + + LK L++RT FA++TEE RYYLN Sbjct: 1 MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLN 60 Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 GIFFH E D LKL AVATDGHRLA AE++ + MP II+PRK V E+ +++ D Sbjct: 61 GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 V V LS+++I + S+ ++ +LIDG FP+YQ VIP NDK+L ++ + +VDRVS Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVS 180 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 +SS R +AVKLS++ +L +TV+NPD G A + + Y+ P+DI FN KYLL+I + Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQL 240 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + VF L + S +R + + YVLMPMR+ Sbjct: 241 SGTD-----AVFMLADAGSPTLVRDTGDE---------DVLYVLMPMRV 275 Score = 38.7 bits (89), Expect = 1.8, Method: Composition-based stats. Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 7/93 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI-EITGAIPAS 60 K+T++R D + I + V L DG L + + P+ T + A Sbjct: 164 KLTIDRQDFAASVDRVSTISSERG-----RAVKLSIADGQLTLTVNNPDSGSATDELAAD 218 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 D I ++ L DI +L + + Sbjct: 219 YDGDPLDIGFNSKYLLDITGQLSGTDAVFMLAD 251 >gi|317054733|ref|YP_004103200.1| DNA polymerase III subunit beta [Ruminococcus albus 7] gi|315447002|gb|ADU20566.1| DNA polymerase III, beta subunit [Ruminococcus albus 7] Length = 368 Score = 277 bits (708), Expect = 3e-72, Method: Composition-based stats. Identities = 90/387 (23%), Positives = 179/387 (46%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + + + + + + ++T+P + D LLE+ E+ I I Sbjct: 1 MKFICTKQTLYDAIVNVSKAVSERSTLPSLEGIKFSLADSLLELTGYNLEMGIRTVISVR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS ++A L ++++K+ + + +V IS G + F + + ++P Sbjct: 61 SDDKGSCIINARLFSEMIKKMSADEVLIDISD---SYQVTISGGVTKFNMFAASAEDYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E++ ++ VLKN++ +T FA+A E + L G F I L L VA DG+R Sbjct: 118 LPEKDSETQIPISQPVLKNMIAQTKFAVALTEDKPILKGELFDIENNTLTL--VAIDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +AV + A+ +VP K++ EI +LS +D +V + S I +I + Sbjct: 176 MAVRYEPVK--YAEQIKFVVPSKSLSEIQGLLSDNEDDTVYIHPSRKHIIFDIGGYMVYS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMT 298 RL++G+F Y++ IP S++ ++ V+ L ++R ++ + R V+ +D + + Sbjct: 234 RLLEGDFHPYKSAIPNSSNTDVVVDRKELISTLERAMLLINDRSPSPVRCFFENDHVKIN 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +GK + ++ ++I F KYLL+ + I D++V R+ S ++ Sbjct: 294 CTTA-LGKISDEISADIAGPVIEIGFKCKYLLDPLKVIE-----DEKVKLRMGGSLLAMK 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + Y+++P+R+ Sbjct: 348 IVPCEGE---------KYTYLVLPVRL 365 >gi|288922085|ref|ZP_06416290.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] gi|288346562|gb|EFC80886.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] Length = 391 Score = 276 bits (707), Expect = 3e-72, Method: Composition-based stats. Identities = 90/402 (22%), Positives = 173/402 (43%), Gaps = 30/402 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 M++TV+R + +L+ A R + K T + V +LL+A+ L + A E+ TGA Sbjct: 1 MRLTVDRDSLADLVPWAARTLPSKATTQLQVLAGLLLEADGSALRVSAYDYEVATTGAAD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V G V+ +L D+V+ L GT + I+ G ++F L P ++ Sbjct: 61 ARVVEEGRALVNGKMLADLVKSLPKARVELAVD----GTRLTITSGSASFKLPMLPSEDY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + + + + V + A ++ L GI + + + L ATD Sbjct: 117 PALPPMPDLLG-TVDAGLFVTAVGQVGIAAGRDDTLPVLTGIRVEFSPKTITL--AATDR 173 Query: 179 HRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR--------- 227 +RLAV + ++++P + + +I R ++ + + ++ + + Sbjct: 174 YRLAVRTIPWEPAPDADLTLTLLIPARTLSDIAR--AAGEGRITIAAAGQKKAEGRGSGE 231 Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 ++ + RLI+G FP Y+ ++P S V L AV RV++++S R Sbjct: 232 PASAGFDVAGRQTTTRLIEGTFPPYRKLLPDSTPLIAEVEIPPLAAAVKRVALVAS-RTA 290 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 V+L+ + L + +A E++ V Y+ + + FN YLL+ I D V Sbjct: 291 PVQLTFAPGLLALEAGAGGEAQASETLAVAYDGPELKVSFNPAYLLDAAGAIEDDLVRFG 350 Query: 345 EVVFRLD-SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ + GK + + + Y+LMP+R+ Sbjct: 351 FATEEPEIAAVKPAILTGK---TGGDPAEIPDYRYLLMPIRL 389 >gi|297616216|ref|YP_003701375.1| DNA polymerase III subunit beta [Syntrophothermus lipocalidus DSM 12680] gi|297144053|gb|ADI00810.1| DNA polymerase III, beta subunit [Syntrophothermus lipocalidus DSM 12680] Length = 382 Score = 276 bits (706), Expect = 4e-72, Method: Composition-based stats. Identities = 96/395 (24%), Positives = 185/395 (46%), Gaps = 28/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITG-AIP 58 MK ++ + ++ + R + T+PV +LL+A+ L + + EI ++ + Sbjct: 1 MKFSINQPELARVAALVQRAASTRETVPVLSGLLLKASATTGLSMTCTDLEIALSAHTLE 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G+ V+A D+VR L + +I ++E + + +++G S +L + EF Sbjct: 61 ANVIEEGTALVNARYFADLVRYLPN-IEIQVLTDDE-NSRLTVNYGRSQTHLHLYNPQEF 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P T +E + LK L+ +T FA A + G+ F + L++ VA+D Sbjct: 119 PETGRQEPTPLLSVPQKTLKELLRKTSFAAAVNHFKQVFTGVLFDFTPDQLRV--VASDT 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLS 236 HRLA+ + + + + +++P + V E++RIL + V L+ + I E Sbjct: 177 HRLAMMSLAMSSTHTEPRQLVIPSRTVAELIRILEDSEKEVSCGLAGNNIVFTCEEPGFQ 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM------SSVRIQAVKLSL 290 ++ RL++G++PNY VIP + +++ L A++R +M S I+ V L L Sbjct: 237 LTSRLLEGQYPNYLPVIPGNFVSTVKLEPGPLANALERAVLMPTDKQSSKQPIRHVTLEL 296 Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 +L ++ + MG+ E + ++ + I FN +YLL++I + + + Sbjct: 297 KDRELRVSAYSQKMGELQEVLEDISVEGESNIQISFNTRYLLDVIKVLQGECTT---ISL 353 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S S I+ KD + YVL+P+ Sbjct: 354 KFTGSLSPALIQDPCKD---------DYLYVLVPL 379 >gi|313204262|ref|YP_004042919.1| DNA polymerase iii, beta subunit [Paludibacter propionicigenes WB4] gi|312443578|gb|ADQ79934.1| DNA polymerase III, beta subunit [Paludibacter propionicigenes WB4] Length = 378 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 90/375 (24%), Positives = 173/375 (46%), Gaps = 15/375 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V +D+L L R+I KN++P+ + L L + AS E + ++ Sbjct: 1 MKFIVSSTDLLSHLQAISRVINNKNSLPILDNFLFHLEGKTLTMTASDIETTLITSMEVE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G + V++ LL D +R+ + F N+ + I+ + ++ E+P Sbjct: 61 SADGNGKVAVASRLLLDTLREFSEQP--LTFSINDSNLAMVITSANGSYNFIGQNGDEYP 118 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + S L S L + +T F A +E+R +NG+FF I + L L VATD Sbjct: 119 RLPQLQDDAQSLTLPVSTLSAGISKTLFCTADDELRPVMNGVFFDIVADSLTL--VATDA 176 Query: 179 HRLAVA---EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 H+L + + + I+P+K + IL + V++ H + + Sbjct: 177 HKLVRYKTSHTSASVEGEETVNFILPKKPANMLKNILPRESGEVEIRFDNKNAHFKLANY 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +M R ++G +PNY VIP SN ++ ++ L A+ RVS+ ++ VKL+ +++ Sbjct: 237 TMICRQVEGRYPNYNGVIPKSNPFKIIIDRVTLLNALKRVSVFANQASNLVKLAFGQNQI 296 Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++ + D A E++ ++ P+ I F +L+EI+ NI++ + ++F L ++ Sbjct: 297 HISAQDIDFSISAEETITCQFDADPIKIGFKSSFLIEILGNINATD-----IIFELSDAS 351 Query: 355 SSVFIRGKDKDSKNN 369 + I + ++ Sbjct: 352 RAGLILPFENEANEE 366 >gi|301060276|ref|ZP_07201142.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2] gi|300445619|gb|EFK09518.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2] Length = 371 Score = 276 bits (706), Expect = 5e-72, Method: Composition-based stats. Identities = 97/389 (24%), Positives = 195/389 (50%), Gaps = 22/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++R ++L+ + IIE+K+ +PV +L A++ + I A+ E+ I A Sbjct: 1 MEIKIDRDELLKSVSKVQSIIEKKSNMPVLSTILFTADNATVRISATDLELGFQETINAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSIT+S +++I+++ + KEN + IS G + F L S P EFP+ Sbjct: 61 ILEEGSITLSGRKIFEILKETRSSELHIKEKEN---NWIFISDGVARFNLASIPPDEFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178 E E V + L +++ +T +A+ EE + L+G+ D K L VATDG Sbjct: 118 FMEPEGVSMVSIEGETLVDMINKTIYAVTAEEAGFKLSGVLTEKLSIDGKNLLRMVATDG 177 Query: 179 HRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++ + + + +++P+K + E+ ++ + +V++ + + Sbjct: 178 HRLSLIDKPLENLETLELSAGVMIPKKGMSELNKMAADG-GTVEIGFKDKNCVAKKGNAF 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RL++ FP+Y+ VI + + + L A+ ++ I+S+ R +AVK++L +D + Sbjct: 237 LVMRLLETNFPDYKAVIVKNEKDPVDIGKAVLMDAMRKMLILSNERYRAVKITLENDVMD 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + NPD+G+A E++ + Y+ ++ FN K+ ++ + ++ S+ + D S+ Sbjct: 297 LVSTNPDLGEAQENLEIKYSGERVEAGFNPKFFIDTLQSMQSETIHLD-----FTDSSKP 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G D ++MPMR+ Sbjct: 352 FVLTG---------DMDEGFIGLIMPMRV 371 >gi|325279749|ref|YP_004252291.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM 20712] gi|324311558|gb|ADY32111.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM 20712] Length = 374 Score = 275 bits (705), Expect = 5e-72, Method: Composition-based stats. Identities = 89/373 (23%), Positives = 162/373 (43%), Gaps = 12/373 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L L ++I K P+ ++LL A +G+L AS E + I Sbjct: 1 MKFVVSSNTLLTRLQAVSKVIGGKPVQPILDNILLVATEGVLYATASDKETTMEARIELE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G IT+ A +L DI+++ + F+ N EV I F + ++P Sbjct: 61 SLEEEGKITIPAKILLDILKEFPEQP--LTFEINTETNEVKIISEKGEFSVPGESAEDYP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + ++ + +T FA A +++R +N I +NE++ VA+D Sbjct: 119 IQAALNDSSNDLTSKCGLILEGIVKTIFATANDDLRPVMNCILIEMNEDN--FTFVASDA 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + S+I+P+K + IL DS +K+S ++ M+ Sbjct: 177 HKLVRYKRFDAKSENGQFSLILPKKPALMLKNILPKDDSELKISFNDKMACFVFGDYKMT 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 L++G FPNY +VIP +N K++ + L ++ RVS+M++ VK ++ K+ ++ Sbjct: 237 STLVEGRFPNYNSVIPQNNPKKIIIEKKELYNSLRRVSVMANQASNLVKFDVAEGKIVIS 296 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D E++ Y + I F ++LEI+ NI S + VV L Sbjct: 297 AQDMDYSMSGHETLTCQYEGENIAIGFKSPFVLEILSNIES-----ENVVLELSDPTRPG 351 Query: 358 FIRGKDKDSKNNK 370 + + + Sbjct: 352 LFLPFENEDNDED 364 >gi|306842703|ref|ZP_07475346.1| DNA polymerase III, beta subunit [Brucella sp. BO2] gi|306287149|gb|EFM58651.1| DNA polymerase III, beta subunit [Brucella sp. BO2] Length = 275 Score = 275 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 124/289 (42%), Positives = 178/289 (61%), Gaps = 16/289 (5%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 +++ G S+F LQ P+S+FP + +SF + + LK L++RT FA++TEE RYYLN Sbjct: 1 MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLN 60 Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 GIFFH E D LKL AVATDGHRLA AE++ + MP II+PRK V E+ +++ D Sbjct: 61 GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 V V LS+++I + S+ ++ +LIDG FP+YQ VIP NDK+L ++ +VDRVS Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQGFAASVDRVS 180 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336 +SS R +AVKLS++ +L +TV+NPD G A + + Y+ P+DI FN KYLL+I + Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITSQL 240 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + VF L + S +R + + YVLMPMR+ Sbjct: 241 SGTD-----AVFMLADAGSPTLVRDTGDE---------DVLYVLMPMRV 275 Score = 36.8 bits (84), Expect = 5.5, Method: Composition-based stats. Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 7/93 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI-EITGAIPAS 60 K+T++R + I + V L DG L + + P+ T + A Sbjct: 164 KLTIDRQGFAASVDRVSTISSERG-----RAVKLSIADGQLTLTVNNPDSGSATDELAAD 218 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 D I ++ L DI +L + + Sbjct: 219 YDGDPLDIGFNSKYLLDITSQLSGTDAVFMLAD 251 >gi|283782561|ref|YP_003373315.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05] gi|283441379|gb|ADB13845.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05] Length = 374 Score = 275 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 164/387 (42%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + ++A +G L++ A +I I A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI + L+ DI + L + N + I+ G S F LQ P E+P Sbjct: 61 VDEEGSILILGKLMADITKSLPAEKTYLKSENNT----LTITSGKSTFTLQLMPLGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + V + + + EE R L GI ++ + +TD R Sbjct: 117 LPELPHKLGQV-DAPTFIQAVNQASVSTSREENRPVLTGIRIQFEDD--TVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237 L+ + + + S + R ++ + +V + +E S + + Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTRGSLLRDIAHSLDDHQNVIIHFNEEDKSLLGFENSGRTS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDGEFP+ + +N L A+ RVS+++ R +++ S+ +L + Sbjct: 234 TSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVA-ERNAPIRMIFSNQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YLLE + I + V ++ ++ V Sbjct: 293 SAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMKMATAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + ++ D + Y+L+PMR Sbjct: 348 EFNGQQE---SDGDESTDYRYLLVPMR 371 >gi|324991865|gb|EGC23788.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK405] gi|324996245|gb|EGC28155.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK678] gi|325698031|gb|EGD39912.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK160] gi|327458489|gb|EGF04839.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1] gi|327471609|gb|EGF17052.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK408] Length = 378 Score = 275 bits (705), Expect = 6e-72, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ +V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSNVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|269216527|ref|ZP_06160381.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122] gi|269130056|gb|EEZ61138.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122] Length = 364 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 175/387 (45%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ +++ L LG A + I ++TIP+ V ++ LE+K + E I + A Sbjct: 1 MKFSINKTEFLNALGIAGKGIASRSTIPILSGVYIKTLGTSLELKGTDSERAIRCTVSAL 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G V LLYDIV+ D A E T+ IS ++F L+ F ++FP+ Sbjct: 61 IDEDGECVVPERLLYDIVKSFPDAAITMEVDE----TQALISCDKTSFTLKVFDPADFPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ V+R + ++ R L G+ + ++L VATD +R Sbjct: 117 FPDIDVNTKASISFKAFSQAVKRVAKVASKDQGRPALTGVLITTIPDGMRL--VATDSYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ +++ + + + L K+ S+++ LS + + S+ R Sbjct: 175 LAMDDIPCENPTEGFEALV--SGSFMQEVASLPEKEESIEICLSSNHVVFTYGSIVFINR 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--MT 298 I+ FPNYQ ++ S + AV RV +MSS+ +K + S ++ Sbjct: 233 RIEARFPNYQQLLTDSYTTRTEFETAGILAAVRRVGLMSSL-SAPIKFDIESSTATALLS 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + DMG A ES++ ++I N++Y+++ + +I +D+V +S Sbjct: 292 TVSQDMGSAEESLSCDVEGENIEIALNHQYVVDGLSSIPTDKVF-----LETRTSMMPGI 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R +D + Y+LMP+RI Sbjct: 347 FRAQDPE---------RFLYLLMPVRI 364 >gi|329116060|ref|ZP_08244777.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD 2020] gi|326906465|gb|EGE53379.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD 2020] Length = 378 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 180/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ RS ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 3 QFSINRSLFIQALNATKRAISSKNAIPILSTIKIEVNQENITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLISSTGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASLQESRPILTGVHITLSNNKD-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + + A +++P K++ E + +V++ S S+I E Sbjct: 179 ATDSHRMSQRLLSLE-KSANNFDVVIPSKSLREFSSVFGDDIETVEIFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLMNQFETEVVFNTQSLRHAMERAHLISNATQNGTVKLEIAAN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ V++P++GK E ++ V + + I FN YL+E + + S D V R S Sbjct: 298 EVTAHVNSPEVGKVNEELDTVEKSGNDLTISFNPTYLIESLKALKS-----DTVRIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N+ ++ P+R Sbjct: 353 PVRPFTLTPDD--------NQEGFIQLITPVR 376 >gi|306834601|ref|ZP_07467713.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis ATCC 700338] gi|304423237|gb|EFM26391.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis ATCC 700338] Length = 378 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ +S L+ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 3 KFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A+ +IV L D ++ E ++ ++ G S L+ Sbjct: 63 ENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIEHHQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E L + +LK+++ T FA + +E R L G+ ++ + AV Sbjct: 120 VDLYPRLQEMATENPLVLETKLLKSIIAETAFAASLQESRPILTGVHMVLS-DHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + ++++P K++ E + + +V+V S+S++ + Sbjct: 179 ATDSHRMSQRKLTLENTSND-FNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + + E+ N LR A++R ++S+ + VKL ++++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEIANN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + + + I FN YL+E + + S + VV R S Sbjct: 298 SVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKS-----ETVVIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLMPGDD--------AENFIQLITPVR 376 >gi|261415732|ref|YP_003249415.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|261372188|gb|ACX74933.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] gi|302326015|gb|ADL25216.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp. succinogenes S85] Length = 373 Score = 275 bits (704), Expect = 7e-72, Method: Composition-based stats. Identities = 98/384 (25%), Positives = 188/384 (48%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++++ + + L A + K+TI + + L+ LE+ A+ ++ I + Sbjct: 1 MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVEVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ ++A L+D V+ L D + + + + + F ++FP Sbjct: 61 GERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYLVKIQWSERGKASIIGFDANDFPP 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + +A+S L L E+T FA +T+ R LNG+F +D K+ VATDGHR Sbjct: 121 FPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVFLE--AKDGKISMVATDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L A +D +I+P KA+ IL ++ DS+V+V S + I N S+ + + Sbjct: 179 LGRAAID-QEGAELSNGVIIPHKALQHILH-MAKGDSTVEVRTSATHILFNTGSIQVISK 236 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L +G +P+Y++VIP ++ + N T + + V M++ R + ++L + L ++ Sbjct: 237 LYEGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILELSAT 296 Query: 301 NPDM-GKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD+ G + E++ + +N I FN ++L EI+ S +EV+ ++++ + Sbjct: 297 DPDVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKS-----EEVIMKMNNPLGACI 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMP 382 I + +N ++LMP Sbjct: 352 IEPVGE--------NMNFSFLLMP 367 >gi|313887623|ref|ZP_07821305.1| DNA polymerase III, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] gi|312846232|gb|EFR33611.1| DNA polymerase III, beta subunit [Peptoniphilus harei ACS-146-V-Sch2b] Length = 364 Score = 275 bits (704), Expect = 9e-72, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 189/386 (48%), Gaps = 25/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V R ++ + + + I ++ T+ + + + A + L + A+ EI I + A Sbjct: 1 MLIKVNRKELTKHISIVQKAISQRTTMQILEGIKISAKNNSLTLTATDTEISIKTELNAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I +++ L DI+RKL++ N +N+ GDS F L + E+P Sbjct: 61 VEREGDIVINSRLFGDIIRKLENDI----ININVENYMMNLKCGDSIFNLSTQKADEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S ++++ LKN+V++T FA++ +E R G+ I + + VA DG R Sbjct: 117 LPKVEENISIDISAKDLKNIVKKTTFAVSNDESRIVFTGVLMDIKKS--YINFVALDGFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ ++ I SII+P +++ E+++I+ + +K+++S + I + Sbjct: 175 MAIQRLEKETGIEN--SIIIPSRSLNELVKIIDD-EEDLKLNISRNNIVFKFNNTVFYST 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L+ G+F +Y ++ + V+ + AV+R S+++ R +KL++ + + + Sbjct: 232 LLSGDFFSYSALLRDEHKISTSVSKREFQLAVERASLLAREDRANLIKLNVKENYIDIKS 291 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + ++ +DI FN +Y+L+ + + S +E+V S + + I Sbjct: 292 -NSEIGDVFEKVKTSEHDESLDIAFNSRYILDGVKILES-----EEIVLNFTDSVNPLII 345 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + DS Y+++P+R+ Sbjct: 346 TEAENDS---------YIYLVLPVRL 362 >gi|81251097|gb|ABB69894.1| DNA polymerase III beta chain [Nitrosomonas sp. CNS332] Length = 373 Score = 275 bits (703), Expect = 9e-72, Method: Composition-based stats. Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 28/392 (7%) Query: 1 MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T+ R + + L I+ER++T+P+ +VL+ DG L + + EIE+ Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 60 -SVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GS+ TVS L DI+R L G+ + + + I G S F LQ P Sbjct: 61 PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSE---NRLQIVSGKSRFSLQLLPAE 117 Query: 117 EFPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP ++ SF L +LK ++R AMA +++RYYLNG I ED KL V Sbjct: 118 DFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLMLV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRLA+ D+ Q K + I+PRK V E++R L D V V + +I + Sbjct: 176 ATDTHRLAITSFDLDGQFEKSET-IIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSD 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292 + ++I G+F +++ IP ++ + +N + A+ R +I+SS ++V L++++ Sbjct: 235 AVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRSVHLNITN 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 KL ++ N + +A E + + Y+ +D FN YL+E+++N+ S + + +S Sbjct: 295 GKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSFES 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S++ I D D N +VLMPMR Sbjct: 350 MQSAILITLPDDDQFN---------HVLMPMR 372 >gi|24378534|ref|NP_720489.1| DNA polymerase III subunit beta [Streptococcus mutans UA159] gi|24376382|gb|AAN57795.1|AE014853_2 putative DNA polymerase III, beta subunit [Streptococcus mutans UA159] Length = 378 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 179/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ + L+ L R I KN IP+ + ++ N + + S +I I I A Sbjct: 3 KFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAEE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V G+I + A+ +IV L D I+ E +V ++ G S L+ Sbjct: 63 ENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIEQHQVVLNSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ + + AV Sbjct: 120 VEQYPRLQEVGTNNPLILETKLLKTIISETAFAASTQESRPILTGVHLVLT-NHKEFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + + +++P +++ E + + SV+V S S+I E Sbjct: 179 ATDSHRMSQRKLTLD-HSSDDFDVVIPSRSLREFAAVFTDDIESVEVFFSNSQILFRSEY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + + E+ N LR A++R ++S+ + VKL + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEIINN 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ V++P++GK E +++ + + I FN YL+E + + S + V R S Sbjct: 298 QVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKS-----ETVTIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + DN N ++ P+R Sbjct: 353 PIRPFTLTP--------SDNSENFIQLITPVR 376 >gi|114565578|ref|YP_752732.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei str. Goettingen] gi|114336513|gb|ABI67361.1| DNA polymerase III, beta subunit [Syntrophomonas wolfei subsp. wolfei str. Goettingen] Length = 409 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 103/392 (26%), Positives = 186/392 (47%), Gaps = 23/392 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITG-AIP 58 MK +E+ D+L + R KN IPV +LL+++ D L + A+ EI I Sbjct: 30 MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRASTAK 89 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V GS+ V+AH +D ++ L + F + N+ +++I +G S+ ++ ++ + E+ Sbjct: 90 IEVIEKGSVLVNAHYFFDFIKLLPEVPI--FIELNQETAQLDIKYGRSSGFINTYRDYEY 147 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ ++ F + VLK +++T FA AT R G+ F + E L VA+D Sbjct: 148 PALPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDL-GEGGNLNVVASDT 206 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA I + S I+P + EILR+L + + LS + + + + Sbjct: 207 HRLARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFLLL 266 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKL 295 RLI+G++PNY+ VIP S +++++ L ++R ++ S +IQ + +++ Sbjct: 267 SRLIEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEENEV 326 Query: 296 CMTVDNPDMGKAIESMNVY--YNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + MG+ E + + ++I FN Y L+++ + + E++ L S Sbjct: 327 EVNSYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGE---AKELLINLSS 383 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I KD N YVL+P+R Sbjct: 384 ILGPVMIVNPQKD---------NYLYVLVPLR 406 >gi|282879819|ref|ZP_06288548.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1] gi|281306329|gb|EFA98360.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1] Length = 374 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ S + L ++I KN++P+ L + L+I AS E + ++ Sbjct: 1 MRFTLSSSALNNRLQTLSKVINLKNSLPILDCFLFDVANNELKITASDSENVMQTSVSLD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G V + D V++L + L ++ +G NF Q +E+P Sbjct: 61 ECDGNGKFAVPNRTILDAVKELPEQPLTFDVDTEHLTIKILYQNGVYNFTAQ--NAAEYP 118 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T E + + + VL N + R+ FA A +E+R +NGI+F + E L VA+DG Sbjct: 119 QTSEIPDGATVVTIGADVLNNNINRSLFATAQDELRPVMNGIYFDLTPEG--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + S I+P+K + +L+ + V + + E S+S Sbjct: 177 HKL-VRNKNFEIKSDTPASFILPKKPATLLRTVLTKGEGDVVIKFDNRNAEIRYEGGSLS 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G++PNY +VIP N +L V+ L A+ RV +S Q ++L L + KL ++ Sbjct: 236 CRLIEGKYPNYNSVIPQDNPNQLNVDRKGLLGALRRVLPFASESSQLIRLHLETGKLELS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E + Y M I F L +I+ N+ S DEV +L + + Sbjct: 296 SEDVDFATSAKEQIVCDYTGQTMSIGFKGSSLTDILTNLDS-----DEVTIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 LIIP------STQPEHQEVLMLIMPM 370 >gi|170288484|ref|YP_001738722.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2] gi|170175987|gb|ACB09039.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2] Length = 366 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A Sbjct: 1 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V ++ +V+ L D + G + IS G + F + + P EFP Sbjct: 61 EISGEARFVVPGDVIQKMVKVLPDEITELSLE----GDALVISSGSTVFRITTMPADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+DG Sbjct: 117 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 RLA+AE + + S ++ K++ E+ +L + + V R+ L+ + Sbjct: 175 RLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + + Sbjct: 233 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G+ ++ + V + I FN K++ +++ +I + +E+ S S Sbjct: 293 SKSPDYGEVVDEIEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D Y++MP+R+ Sbjct: 348 INPLD---------ISGYLYIVMPIRL 365 >gi|288904225|ref|YP_003429446.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus UCN34] gi|306832485|ref|ZP_07465637.1| DNA-directed DNA polymerase III beta subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325977202|ref|YP_004286918.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] gi|288730950|emb|CBI12494.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus UCN34] gi|304425385|gb|EFM28505.1| DNA-directed DNA polymerase III beta subunit [Streptococcus gallolyticus subsp. gallolyticus TX20005] gi|325177130|emb|CBZ47174.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp. gallolyticus ATCC BAA-2069] Length = 378 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ +S L+ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 3 KFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A+ +IV L D ++ E ++ ++ G S L+ Sbjct: 63 ENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIEHHQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E L + +LK+++ T FA + +E R L G+ ++ + AV Sbjct: 120 VDLYPRLQEMATENPLVLETKLLKSIIAETAFAASIQESRPILTGVHMVLS-DHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + ++++P K++ E + + +V+V S+S++ + Sbjct: 179 ATDSHRMSQRKLTLENTSND-FNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + + E+ N LR A++R ++S+ + VKL ++++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEIANN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + + + I FN YL+E + + S + VV R S Sbjct: 298 SVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKS-----ETVVIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLMPGDD--------AENFIQLITPVR 376 >gi|114330038|ref|YP_746260.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91] gi|114307052|gb|ABI58295.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91] Length = 373 Score = 275 bits (703), Expect = 1e-71, Method: Composition-based stats. Identities = 119/392 (30%), Positives = 199/392 (50%), Gaps = 28/392 (7%) Query: 1 MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T+ R + + L I+ER++T+P+ +VL+ DG L + + EIE+ Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 60 -SVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GS+ TVS L DI+R L G+ + + + I G S F LQ P Sbjct: 61 PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSE---NRLQIVSGKSRFSLQLLPAE 117 Query: 117 EFPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP ++ SF L +LK ++R AMA +++RYYLNG I ED KL V Sbjct: 118 DFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLMLV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRLA+ D+ Q K + I+PRK V E++R L D V V + +I + Sbjct: 176 ATDTHRLAITSFDLDGQFEKSET-IIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSD 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292 + ++I G+F +++ IP ++ + +N + A+ R +I+SS + V L++++ Sbjct: 235 AVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITN 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 KL ++ N + +A E + + Y+ +D FN YL+E+++N+ S + + ++ Sbjct: 295 GKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSFEN 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S++ I D D N +VLMPMR Sbjct: 350 MQSAILITLPDDDQFN---------HVLMPMR 372 >gi|15643032|ref|NP_228075.1| DNA polymerase III, beta subunit [Thermotoga maritima MSB8] gi|4980758|gb|AAD35350.1|AE001708_18 DNA polymerase III, beta subunit [Thermotoga maritima MSB8] Length = 366 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A Sbjct: 1 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V ++ +V+ L D + G + IS G + F + + P EFP Sbjct: 61 EISGEARFVVPGDVIQKMVKVLPDEITELSLE----GDALVISSGSTVFRITTMPADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+DG Sbjct: 117 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 RLA+AE + + S ++ K++ E+ +L + + V R+ L+ + Sbjct: 175 RLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + + Sbjct: 233 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G+ ++ + V + I FN K++ +++ +I + +E+ S S Sbjct: 293 SKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D Y++MP+R+ Sbjct: 348 INPLD---------ISGYLYIVMPIRL 365 >gi|298253030|ref|ZP_06976822.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis 5-1] gi|297532425|gb|EFH71311.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis 5-1] Length = 374 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 165/387 (42%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + ++A +G L++ A +I I A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI + L+ DI + L + N + I+ G S F LQ P E+P Sbjct: 61 VDEEGSILILGKLMADITKSLPAEKTYLKSENNT----LTITSGKSTFTLQLMPLGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + + + EE R L GI ++ + + +TD R Sbjct: 117 LPKLPHKLGQV-DAPTFIQAVNQASVSTSREENRPVLTGIRIQFEDDSVTM--TSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237 L+ + + + S + R ++ + +V + +E S + + Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTRGSLLRDIAHSLDDHQNVIIHFNEEDKSLLGFENSGRTS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDGEFP+ + +N L A+ RVS+++ R +++ S+ +L + Sbjct: 234 TSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVA-ERNAPIRMIFSNQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YLLE + I + V ++ ++ V Sbjct: 293 SAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMKMATAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + ++ D + Y+L+PMR Sbjct: 348 EFNGQQE---SDGDESTDYRYLLVPMR 371 >gi|116750114|ref|YP_846801.1| DNA polymerase III subunit beta [Syntrophobacter fumaroxidans MPOB] gi|116699178|gb|ABK18366.1| DNA polymerase III, beta subunit [Syntrophobacter fumaroxidans MPOB] Length = 369 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 108/386 (27%), Positives = 191/386 (49%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59 MK+ +E+ +++++L I ++K+++PV +VL+ +++ +E A+ E+ + Sbjct: 1 MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQTGG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ GS TVSA L++IVR+L + E ++ I G + F L + P +FP Sbjct: 61 QVETPGSSTVSARKLFEIVRELPQPEVLL---EGLPNNKMQILSGRARFELSTIPGEDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 ++ ++ LK + +T ++ +E + + G F H ED V++DGH Sbjct: 118 QLNFYRETELVKVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNED-SYRFVSSDGH 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ EV A + +I+PRK V EILR+L K+ V + + E + L S + Sbjct: 177 RLSYCEVPKEAFGTLDIREGLIIPRKGVQEILRMLE-KEEEVVLGVHEKYVVLRTPSTFL 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 SV+L+D EFP Y+ +IP + ++ A+ R SI+S+ + V+ L+ L + Sbjct: 236 SVQLLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKGVLEL 295 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 NP++G A E+++V Y + FN +YLLE I + S V + V D + V Sbjct: 296 EAGNPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWV----DQFHGGV 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 F+ +D ++MPM Sbjct: 352 FVGSED----------PGFLSLVMPM 367 >gi|237756531|ref|ZP_04585058.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] gi|237691305|gb|EEP60386.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium yellowstonense SS-5] Length = 362 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + D+ E I E+K +P+ + LL+A DG L + + E+ + IPA Sbjct: 1 MKLKAYKKDLQEAFKKV--ISEKKAALPILTNFLLKAEDGKLTVYGTDLEVYTSYTIPAD 58 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ V++ + DI + L + + G + I+ G + + L +F +FP Sbjct: 59 VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ L + +T +A++ +E R+ LNG+ F + KL VATDGHR Sbjct: 115 PESYPSDLAILISGQELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + + IVP+KA+ EI +++S + V+V++S S I + +S R Sbjct: 173 LALYSTEITGKGLE-GKYIVPQKALNEIKKLVSDVE-DVEVAVSGSSIFFKGSNYILSAR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FPNY VIP S + E+ ++ + L ++ RV I + +KL L +KL ++ Sbjct: 231 LLEGVFPNYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENDNKPIKLKLFDNKLIISTP 290 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 A + + V Y+ +I FN KY+L+ + DE+ D +V + + +S I Sbjct: 291 PTSDAYAEDEIEVNYDGEEFEIGFNGKYILDAV-----DEIEDKNIVVKFINKDSQTVII 345 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + V+MPM I Sbjct: 346 PENPEER--------YLAVVMPMTI 362 >gi|290579528|ref|YP_003483920.1| putative DNA polymerase III subunit beta [Streptococcus mutans NN2025] gi|254996427|dbj|BAH87028.1| putative DNA polymerase III beta subunit [Streptococcus mutans NN2025] Length = 378 Score = 274 bits (702), Expect = 1e-71, Method: Composition-based stats. Identities = 93/392 (23%), Positives = 180/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ + L+ L R I KN IP+ + ++ N + + S +I I I A Sbjct: 3 KFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAEE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V G+I + A+ +IV L D I+ E +V ++ G S L+ Sbjct: 63 ENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIEQHQVVLNSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L +++LK ++ T FA +T+E R L G+ + + AV Sbjct: 120 VEQYPRLQEVGTNNPLILETNLLKTIISETAFAASTQESRPILTGVHLVLT-NHKEFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + + +++P +++ E + + SV+V S S+I E Sbjct: 179 ATDSHRMSQRKLTLD-HSSDDFDVVIPSRSLREFATVFTDDIESVEVFFSNSQILFRSEY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + + E+ N LR A++R ++S+ + VKL + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEIINN 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ V++P++GK E +++ + + I FN YL+E + + S + V R S Sbjct: 298 QVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKS-----ETVTIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + DN N ++ P+R Sbjct: 353 PIRPFTLTP--------SDNSENFIQLITPVR 376 >gi|188996889|ref|YP_001931140.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1] gi|188931956|gb|ACD66586.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1] Length = 362 Score = 274 bits (702), Expect = 2e-71, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + D+ E I E+K +P+ + LL+A DG L + + E+ + IPA Sbjct: 1 MKLKAYKKDLQEAFKKV--ISEKKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIPAD 58 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ V++ + DI + L + + G + I+ G + + L +F +FP Sbjct: 59 VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ L + +T +A++ +E R+ LNG+ F + KL VATDGHR Sbjct: 115 PEAFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ +I + + IVP+KA+ EI +++S + V+V++S S I + +S R Sbjct: 173 LALYSTEITGKGLE-GKYIVPQKALNEIKKLVSDVE-DVEVAVSGSSIFFKGSNYVLSAR 230 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++G FP+Y VIP S + E+ ++ + L ++ RV I + +KL L +KL ++ Sbjct: 231 LLEGVFPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTP 290 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 A + + V Y+ +I FN KY+LE + DE+ D +V + + +S I Sbjct: 291 PTSDTYAEDEIEVNYDGEEFEIGFNGKYILEAV-----DEIEDKNIVAKFINKDSQTVII 345 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + V+MPM I Sbjct: 346 PENPEER--------YLAVVMPMTI 362 >gi|56966599|pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit (Tm0262) From Thermotoga Maritima At 2.00 A Resolution Length = 378 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+TV ++ + + A + + +K+ P+ L + DG I A+ E + + A Sbjct: 13 MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V ++ +V+ L D + G + IS G + F + + P EFP Sbjct: 73 EISGEARFVVPGDVIQKMVKVLPDEITELSLE----GDALVISSGSTVFRITTMPADEFP 128 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +FE+ +S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+DG Sbjct: 129 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 186 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 RLA+AE + + S ++ K++ E+ +L + + V R+ L+ + Sbjct: 187 RLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 244 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +R++D EFP+Y+ VIP + ++ V+ LR+++ RV +++S ++VK + + + + Sbjct: 245 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 304 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G+ ++ + V + I FN K++ +++ +I + +E+ S S Sbjct: 305 SKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 359 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D Y++MP+R+ Sbjct: 360 INPLD---------ISGYLYIVMPIRL 377 >gi|319945981|ref|ZP_08020230.1| DNA-directed DNA polymerase III beta subunit [Streptococcus australis ATCC 700641] gi|319747789|gb|EFW00034.1| DNA-directed DNA polymerase III beta subunit [Streptococcus australis ATCC 700641] Length = 378 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 3 NFSINKAYFLQALNTTKRAISSKNAIPILSTIKIDVTSEGITLIGSNGQISIEYFISVKD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V G+I + A ++V L D + KE E ++ + G S L+ Sbjct: 63 ENAGLLVTTPGAILLEATFFINVVSSLPD--VVLDVKEIEQK-QIVLVSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L LK ++ T FA +T+E R L G+ F ++ + +L V Sbjct: 120 AEQYPRIQEISASNPLTLPIQTLKKIISETAFAASTQESRPILTGVHFVLS-DHKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +++P +++ E+ + S + V+V + ++I ++ Sbjct: 179 ATDSHRMSQKNITLEKN-GDNFDVVIPSRSLRELTSVFSDEIEQVEVFFANNQILFRSDN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP E+ +LRQA++R ++S+ + VKL ++S Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSSEVTFKVAHLRQAMERARLLSNATQNGTVKLEIASG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + ++I FN YL++ + I S++ VV R S Sbjct: 298 VVSAHVNSPEVGRVNEEIDTEAVSGDDLNISFNPTYLIDALKAIESEK-----VVIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + ++ ++ P+R Sbjct: 353 AVRPFTLVPAEE--------SERFIQLITPVR 376 >gi|320547712|ref|ZP_08041997.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus ATCC 9812] gi|320447787|gb|EFW88545.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus ATCC 9812] Length = 378 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 181/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ +S L+ L R I KN +P+ + ++ + + + S +I I IP + Sbjct: 3 KFSINKSFFLQALNATKRAISTKNALPILSTIKIEVQNNNITLTGSNGQISIENTIPTTN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A+ +IV L D ++ E ++ + G S L+ Sbjct: 63 ENAGLLITSPGAVLLEANFFINIVSSLPD---VTLDFEEIESHQIVLISGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E + + +LK+++ T FA + +E R L G+ +++ AV Sbjct: 120 VDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKD-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++VP K++ E + + +V+V S+S++ + Sbjct: 179 ATDSHRMSQRKLTLENTSND-FNVVVPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ N LR A++R ++S+ + VKL ++++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNSFETEVTFNTNALRSAMERAHLISNATQNGTVKLEITNN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + + + I FN YL+E + + S + V+ R S Sbjct: 298 SVSAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKS-----ETVIIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLVPGDD--------AENLIQLITPVR 376 >gi|323345728|ref|ZP_08085951.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis ATCC 33269] gi|323093842|gb|EFZ36420.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis ATCC 33269] Length = 374 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ S + L R+I KN++P+ L + G L I AS E + ++ Sbjct: 1 MRFTLSSSALNGHLQTLARVINSKNSLPILDCFLFEVAGGKLNITASDSENVMRSSVQLD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS + + D V++L + + L +V +G +F Q E+P Sbjct: 61 ESDTEGSFAIPNRTILDAVKELPEQPLTFDVDTSNLTIKVLYQNGMYSFTAQ--HADEYP 118 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + + S+VL + + R+ FA A +E+R +NGI+F + + L VA+DG Sbjct: 119 RTQPMPDGATVVTIDSAVLNDNISRSLFATAQDELRPVMNGIYFDLTADS--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + I+P+K + ILS V + E + +S Sbjct: 177 HKL-VRNKNFTIKSDTPAAFILPKKPATLLKNILSKDGGDVVIKFDERNAEIQYAGGILS 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N L ++ L A+ RV +S Q V+ L + KL +T Sbjct: 236 CRLIEGRYPNYNSVIPQNNPNLLTIDRRTLLGALRRVLPFASESSQLVRFHLEAGKLELT 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E++ Y M I F L EI+ N+ S DEV +L + + Sbjct: 296 SEDVDFATSAKENITCDYTGQTMSIGFKGSSLSEILTNLDS-----DEVTIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 IIVP------TTQPENEDVLMLIMPM 370 >gi|291543410|emb|CBL16519.1| DNA polymerase III, beta subunit [Ruminococcus sp. 18P13] Length = 368 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 176/385 (45%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ DI +G+ + + K+TI + ++ + +LE+ E+ I I A Sbjct: 1 MKFSCKKEDICAAIGNVSKAVSVKSTITALEGIRIKLSYTVLELTGYDLELGIRSTIEAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + CG V+A L +I RK+ D +I F+ +E+ + I+ + + + + E+P Sbjct: 61 SEDCGEFVVNARLFSEITRKMSD--EILTFETDEMLN-IRITGAVTEYCISAMSAEEYPD 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + F + LK+++ +T A++ E + + G F I E+ V +DG+R Sbjct: 118 LPEVSDEHRFLVPQDQLKSMINQTAHAVSLNENKPVMTGALFDITEDGN-FNMVTSDGYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ I A++ +VP + + E+ R+L + + + I + +++ Sbjct: 177 LALRTEHI--DTAEVHRFVVPARTLSEVSRLLKEDAKAPCGIYNNFKHIVFELGEITVFS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 RL++G+F NY+ IP E+ V L ++R +++ + + + V+ + + ++ Sbjct: 235 RLLEGDFHNYRASIPPDKRTEVIVRTRELVNCLERCALLINEKNKAPVRCVFENGTVKVS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +G +++ V + + I FN K++L+ + D+ + L N V Sbjct: 295 CKTG-IGSISDTIPVDLSGDAVTIGFNNKFMLDALRASECDK-----LRIHLSGGNRVVK 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I + DS +++MP+ Sbjct: 349 IIPPEGDS---------FVFLVMPV 364 >gi|323350830|ref|ZP_08086489.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis VMC66] gi|322123004|gb|EFX94707.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis VMC66] gi|324989579|gb|EGC21525.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK353] gi|325686478|gb|EGD28507.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK72] Length = 378 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + L + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGLTLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNQF-LKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|312866786|ref|ZP_07726999.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis F0405] gi|311097569|gb|EFQ55800.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis F0405] Length = 378 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 172/392 (43%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 3 NFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIKD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D E + +V ++ G S L+ Sbjct: 63 ENAGLLVTSPGSILLEATFFINVVSSLPDVTLDFKEIEQK---QVLLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK L+ T FA + +E R L G+ F +++ +L V Sbjct: 120 ADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +++P +++ E + S +V+V + ++I E Sbjct: 179 ATDSHRMSQKVITLDKN-GDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + E N NLR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFKNG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++G+ E ++ + + I FN YL+E + I S ++VV R S Sbjct: 298 VVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDS-----EQVVIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ + ++ P+R Sbjct: 353 SVRPFTLVPEENEQ--------GFIQLITPVR 376 >gi|322390525|ref|ZP_08064043.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 903] gi|321142799|gb|EFX38259.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 903] Length = 380 Score = 274 bits (701), Expect = 2e-71, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 5 NFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIKD 64 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D E + +V ++ G S L+ Sbjct: 65 ENAGLLVTSPGSILLEATFFINVVSSLPDVTLDFKEIEQK---QVLLTSGKSEITLKGKD 121 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK L+ T FA + +E R L G+ F +++ +L V Sbjct: 122 ADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNK-ELKTV 180 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +++P +++ E + S +V+V + ++I E Sbjct: 181 ATDSHRMSQKVITLEKN-GDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRSEH 239 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + E N NLR A++R ++S+ + VKL + Sbjct: 240 ISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFKNG 299 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++G+ E ++ + + I FN YL+E + I S ++VV R S Sbjct: 300 VVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDS-----EQVVIRFIS 354 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + ++ P+R Sbjct: 355 SVRPFTLVPEGNEQ--------GFIQLITPVR 378 >gi|81251101|gb|ABB69897.1| DNA polymerase III beta chain [Nitrosomonas sp. IWT310] Length = 373 Score = 274 bits (700), Expect = 3e-71, Method: Composition-based stats. Identities = 120/392 (30%), Positives = 198/392 (50%), Gaps = 28/392 (7%) Query: 1 MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T+ R + + L I+ER++T+P+ +VL+ DG L + + EIE+ Sbjct: 1 MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60 Query: 60 -SVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ GS+ TVS L DI+R L G+ + + + I G S F LQ P Sbjct: 61 PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSE---NRLQIVSGKSRFSLQLLPAE 117 Query: 117 EFPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP + SF L +LK ++R AMA +++RYYLNG I ED KL V Sbjct: 118 DFPRMVRDNERCDTSFTLTQQMLKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLMLV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRLA+ D+ Q K + I+PRK V E++R L D V V + +I + Sbjct: 176 ATDTHRLAITSFDLDGQFEKSET-IIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSD 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292 + ++I G+F +++ IP ++ + +N + A+ R +I+SS + V L++++ Sbjct: 235 AVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITN 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 KL ++ N + +A E + + Y+ +D FN YL+E+++N+ S + + +S Sbjct: 295 GKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSFES 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S++ I D D N +VLMPMR Sbjct: 350 MQSAILITLPDDDQFN---------HVLMPMR 372 >gi|222152203|ref|YP_002561378.1| DNA polymerase III subunit beta [Streptococcus uberis 0140J] gi|222113014|emb|CAR40317.1| DNA polymerase III, beta chain [Streptococcus uberis 0140J] Length = 378 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 174/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ RS ++ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 3 QFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSSTDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ +I+ L D E +V ++ G S L+ Sbjct: 63 ENAGLLITDTGSILLEANFFINIISSLPDVTLDFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+L+ T FA +T+E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTDNPLVLETKLLKSLINETAFAASTQESRPILTGVHLTLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + ++++P +++ E + + +V++ S S+I E+ Sbjct: 179 ATDSHRMSQRLLVLDKASTD-FNVVIPSRSLREFSSVFTDDIETVEIFFSPSQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E N LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTDRLLINQFETEATFNTQALRHAMERAFLISNATQNGTVKLEIKEN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E + + + + I FN YL+E + + S + V R S Sbjct: 298 TISAHVNSPEVGKVNEELEIVEKSGSDLTISFNPTYLIEALKALKS-----ETVRIRFVS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + ++ P+R Sbjct: 353 PVRPFTLTPGDDEE--------GFIQLITPVR 376 >gi|322377904|ref|ZP_08052392.1| DNA polymerase III, beta subunit [Streptococcus sp. M334] gi|321281080|gb|EFX58092.1| DNA polymerase III, beta subunit [Streptococcus sp. M334] Length = 378 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S ++V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|332522185|ref|ZP_08398437.1| DNA polymerase III, beta subunit [Streptococcus porcinus str. Jelinkova 176] gi|332313449|gb|EGJ26434.1| DNA polymerase III, beta subunit [Streptococcus porcinus str. Jelinkova 176] Length = 377 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 171/392 (43%), Gaps = 28/392 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ RS ++ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 3 QFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIETIIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D E+ +V ++ G S L+ Sbjct: 63 ENAGLLISSTGAILLEASFFINIISSLPDFTLDFKEIEHH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA +T+E R L G+ + + AV Sbjct: 120 VEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASTQESRPILTGVHLTLK-NHKEFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +++P K++ E + + +V++ S S+I + Sbjct: 179 ATDSHRMSQRLLTLEKSATD-FDVVIPSKSLREFTSVFTDDIETVEIFFSPSQILFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E N LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEVTES 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E + V + I FN YL+E + ++ V R S Sbjct: 298 SVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKAFK-----NETVRIRFVS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ ++ P+R Sbjct: 353 PVRPFTLTSDDEE---------GFIQLITPVR 375 >gi|171778196|ref|ZP_02919425.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] gi|171283020|gb|EDT48444.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp. infantarius ATCC BAA-102] Length = 378 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ +S L+ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 3 KFSINKSFFLQALNATKRAISSKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A+ +IV L D ++ E ++ ++ G S L+ Sbjct: 63 ENAGLLITSSGAVLLEANFFINIVSSLPD---VTLDFEEIEHHQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E + + +LK+++ T FA + +E R L G+ +++ AV Sbjct: 120 VDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKD-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + ++++P K++ E + + +V+V S+S++ + Sbjct: 179 ATDSHRMSQRKLTLDNTSND-FNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ N LR A++R ++S+ + VK+ ++++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNSFETEVTFNTGALRSAMERAHLISNATQNGTVKVEITNN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + + + I FN YL+E + + S + VV R S Sbjct: 298 SISAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKS-----ETVVIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLMPGDD--------AENFIQLITPVR 376 >gi|302388601|ref|YP_003824422.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM 16646] gi|302199229|gb|ADL06799.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM 16646] Length = 370 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 167/389 (42%), Gaps = 28/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ +L + A R I K T+P+ + A LE+ ++ E+ I +PA Sbjct: 1 MQFLIEKDQLLSGVSVAERFIASKTTMPILSGIKFSAYGSTLELSSTDLEMGIECRLPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G +S + DI RKL G + +E ++ + GD + +FP Sbjct: 61 IMEEGDAVISTKVFSDIARKLPQGQVLFRRQEG----QITVEAGDFRLNMPVLEAGDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179 E + KN+V++T FA A + R L G + + VA DG Sbjct: 117 VVPPETNPILKFPKETFKNMVKQTIFARAEDSIARPVLTGELLEAR--NGRFHVVALDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 R+A + S++VP +A+ E+ R LS + + ++ +R+ E+L M+ Sbjct: 175 RIAWRWEEAEVPD---FSVVVPGRALLELTRALSDTGEDTFEIHTGRNRVVFCTENLVMA 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLC 296 R+++G+F +Y+ V+ + L +++R I++ + VK + + ++ Sbjct: 232 TRVLEGKFIDYEQVVKVDPKITVVAKTDALLSSIERAFIVAREGSKNNLVKFRIGNGRME 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + +MG E + + + + FN ++ +E + + V E+ + Sbjct: 292 VSSE-TEMGSVYEKVECETSGDDLVVAFNARFFIEALRS-----VEQPEIELKFAGEVGP 345 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR ++ ++ N ++P+R+ Sbjct: 346 CVIRPRNVENHINF---------ILPVRL 365 >gi|297243221|ref|ZP_06927156.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis AMD] gi|296888755|gb|EFH27492.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella vaginalis AMD] Length = 374 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 163/387 (42%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + ++A +G L++ A +I I A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDARPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI + L+ DI + L + N + I+ G S F LQ P E+P Sbjct: 61 VDEEGSILILGKLMADITKSLPAEKTYLKSENNT----LTITSGKSTFTLQLMPLGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + + + EE R L GI ++ + +TD R Sbjct: 117 LPKLPNKLGQV-DAPTFIQAVNQASVSTSREENRPVLTGIRIQFEDD--TVTMTSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237 L+ + + + S + R ++ + +V + +E S + + Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTRGSLLRDIAHSLDDHQNVIIHFNEEDKSLLGFENSGRTS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + ++IDGEFP+ + +N L A+ RVS+++ R +++ S+ +L + Sbjct: 234 TSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVA-ERNAPIRMIFSNQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YLLE + I + V ++ ++ V Sbjct: 293 SAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMKMATAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + ++ D + Y+L+PMR Sbjct: 348 EFNGQQE---SDGDESTDYRYLLVPMR 371 >gi|157363350|ref|YP_001470117.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO] gi|157313954|gb|ABV33053.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO] Length = 367 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 90/385 (23%), Positives = 177/385 (45%), Gaps = 22/385 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ + + + I K P+ +L + + A+ E + + + Sbjct: 3 RLKTNVGEFTSKISIVSKTIPSKTIKPIMACILFDISHDGTFLHATDLETGVKARMESEA 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G V A +Y+IVR L + ++ + L + + G S F L + +FP Sbjct: 63 DGEGKFAVDAKTVYEIVRTLPNEEEVLLEFSSNL---MTLECGRSKFRLPTMDPGDFPEI 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + +++ER F A +E LNG+F+ I L+L VA+DG RL Sbjct: 120 SLTTEGNTLMLDAKTINDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRL--VASDGFRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVR 240 A++E + AQ S ++ K++ E+ I+ S DS + + R+ LN + + +R Sbjct: 178 ALSEERLNAQSE--SSFLISLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 +++ +FP+Y+ V+P + ++ + + +A+ R +++ ++V+L +S D L ++ Sbjct: 236 VVEIDFPDYRKVLPKAFKSKVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSR 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 +PD G+ E + + + I FN +LLE + ++ + +EV S S + I Sbjct: 296 SPDYGEVNEEIPIKKEGEDITIAFNPLFLLEAMRHVHT-----EEVELNFVDSTSPLQI- 349 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N N Y++MP+RI Sbjct: 350 --------NPLNVEGYLYIIMPIRI 366 >gi|328946932|ref|YP_004364269.1| DNA polymerase III subunit beta [Treponema succinifaciens DSM 2489] gi|328447256|gb|AEB12972.1| DNA polymerase III, beta subunit [Treponema succinifaciens DSM 2489] Length = 374 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 102/390 (26%), Positives = 191/390 (48%), Gaps = 24/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T ++ +++ + A II KN + ++L+ A + L IKA+ ++ +P Sbjct: 1 MRFTFDKDTMIKEISIAQEIISTKNMGSILSNILIIAQENKLTIKATDIKVNFETQVPVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS------HGDSNFYLQSFP 114 + G+ TV I+ L G +I F +E + E +I+ F ++S Sbjct: 61 ITEEGTTTVYCDKFMGILNSLPSG-EIEFNQEKKENEEQSINVIIKPVDKKIKFQMKSMS 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + +FP E V FE++S +K ++ +T FA++ +E RY++NG+FF ++L + V Sbjct: 120 QEKFPEFYSAENVPYFEVSSKDIKEMIAQTSFAVSEDETRYFMNGVFFEKKGDNLNM--V 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG RL+ I+A I++ PS IV K + IL+ ++ ++ V++ + I + Sbjct: 178 ATDGRRLSFVSKSILAGISEFPSAIVHPKILNIILKHAP-EEGNIFVAVVDKMIFFKFGN 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 L++G+FPNY+ VIP +V +L A+ RV++M + + ++S Sbjct: 237 YKFGAALLEGQFPNYERVIPEHQAFNFQVYKADLVDALKRVALMVDKKAGRIFFNISDGV 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T DMG A E + Y I N++Y+ E + I+S +++ F Sbjct: 297 LKITSSQSDMGSADEEIPCQYQGDSYTIALNFRYIEEPLRGINS-----EKIAFEFTEEM 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +V +R + + + F+++MPM+ Sbjct: 352 KAVTMRPEPAE---------DYFHIIMPMQ 372 >gi|328952218|ref|YP_004369552.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM 11109] gi|328452542|gb|AEB08371.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM 11109] Length = 388 Score = 273 bits (699), Expect = 3e-71, Method: Composition-based stats. Identities = 109/404 (26%), Positives = 201/404 (49%), Gaps = 39/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +E+ +L+ G +I+R+ P+ H LL+A + L+I A+ E+ +G PA Sbjct: 1 MKLHIEKDALLQGAGRTQGVIDRRGHTPILSHCLLEAGNNQLKISATDYEVSFSGYYPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G +TV A Y+I+R+L G EN + + I GD+ + P FP Sbjct: 61 VEEEGGLTVPAVSFYNILRELPAGTISLESTEN---SNLVIQVGDARYQFLGLPVENFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL--CAVATDG 178 + E EL++SVL ++E+T F++A ++I+ +L G+ ED ++ V++DG Sbjct: 118 LPKLENQPMIELSNSVLSEMLEKTIFSIAADDIQPHLTGVLLEKITEDGRIIVRLVSSDG 177 Query: 179 HRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 HRL++ + +I A QI +II+PRK V E+LR++ S++ + + + I L Sbjct: 178 HRLSLIDREIPAIEQINLEKAIIIPRKGVAEMLRLI-SEEERCALGIEKKSIILRQGDKY 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +RL+D ++P+Y+ +IP S + + V + R+S++S+ + + V + +S L Sbjct: 237 LYIRLLDKKYPDYRRIIPASPEVRITVGRRAFLDVLKRISLLSAEKFKGVIMMVSEGWLD 296 Query: 297 MTVDNPDMGKAIESMNV-------------YYNEC----PMDICFNYKYLLEIIDNISSD 339 + NP++G E + + +E P+ + +N +YL+E + + S Sbjct: 297 IRYHNPEIGGGDERLPITVNFLNSEVVAEQERDEETLCLPIRLSYNARYLIEPLSVMQS- 355 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 DE+ F L + +R N ++MPM Sbjct: 356 ----DEIYFELTKKKKPLCLRDA---------NDPKYLSIVMPM 386 >gi|125716889|ref|YP_001034022.1| DNA polymerase III subunit beta [Streptococcus sanguinis SK36] gi|125496806|gb|ABN43472.1| DNA polymerase III, beta chain, putative [Streptococcus sanguinis SK36] Length = 378 Score = 273 bits (698), Expect = 3e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEITGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|325689355|gb|EGD31361.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK115] Length = 378 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|146317664|ref|YP_001197376.1| DNA polymerase III subunit beta [Streptococcus suis 05ZYH33] gi|223933959|ref|ZP_03625918.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591] gi|253750925|ref|YP_003024066.1| DNA polymerase III, beta chain [Streptococcus suis SC84] gi|253752824|ref|YP_003025964.1| DNA polymerase III, beta chain [Streptococcus suis P1/7] gi|253754649|ref|YP_003027789.1| DNA polymerase III, beta chain [Streptococcus suis BM407] gi|302023111|ref|ZP_07248322.1| DNA polymerase III subunit beta [Streptococcus suis 05HAS68] gi|330831851|ref|YP_004400676.1| DNA polymerase III subunit beta [Streptococcus suis ST3] gi|145688470|gb|ABP88976.1| DNA polymerase sliding clamp subunit [Streptococcus suis 05ZYH33] gi|223897378|gb|EEF63780.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591] gi|251815214|emb|CAZ50778.1| DNA polymerase III, beta chain [Streptococcus suis SC84] gi|251817113|emb|CAZ54834.1| DNA polymerase III, beta chain [Streptococcus suis BM407] gi|251819069|emb|CAR44083.1| DNA polymerase III, beta chain [Streptococcus suis P1/7] gi|319757174|gb|ADV69116.1| DNA polymerase III subunit beta [Streptococcus suis JS14] gi|329306074|gb|AEB80490.1| DNA polymerase III subunit beta [Streptococcus suis ST3] Length = 378 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 3 QFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A ++V + D E + ++ ++ G S L+ Sbjct: 63 ENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK---QIVLTSGKSEITLKGKE 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + VLK + T FA +T+E R L G+ F + E L V Sbjct: 120 AEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + ++++P +++ E + + +V+V S ++I E Sbjct: 179 ATDSHRMSQRKLVLDTS-GDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + NLR +++R ++S+ + VKL ++++ Sbjct: 238 ISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIANN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ V + + I FN YL+E + +S ++V S Sbjct: 298 VVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTS-----EQVKISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ + ++ P+R Sbjct: 353 SVRPFTLIPNNE--------GEDFIQLVTPVR 376 >gi|307705908|ref|ZP_07642746.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597] gi|307620569|gb|EFN99667.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597] Length = 378 Score = 273 bits (698), Expect = 4e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 IVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|332365095|gb|EGJ42860.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK355] Length = 378 Score = 272 bits (697), Expect = 4e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNC-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|307707900|ref|ZP_07644375.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261] gi|307615965|gb|EFN95163.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261] Length = 378 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S ++V S Sbjct: 298 IVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|309799271|ref|ZP_07693519.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302] gi|308117116|gb|EFO54544.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302] Length = 378 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ GS+ + A ++V L D E + ++ ++ G S L+ Sbjct: 63 ENAGLLINSLGSVLLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F ++ +L V Sbjct: 120 SEQYPRIQEIAASNPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLS-NHKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + LRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVAKLRQSMERARLLSSATQNGTVKLEIKEG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + + I FN YL+E + ++S ++V S Sbjct: 298 IVSAHVHSPEVGKVNEEIDTENVSGADLTISFNPTYLIEALKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376 >gi|288803394|ref|ZP_06408827.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18] gi|288334214|gb|EFC72656.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18] Length = 374 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 180/386 (46%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + + L R+I KN++P+ L + +DG L I AS E + G + Sbjct: 1 MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEVHDGQLTITASDSENVMRGTLNLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ V+ H + D V++L + +E+ V +G NF + E+P Sbjct: 61 SCEGEGNFAVNNHTILDAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPILG--ADEYP 118 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + L + L + + R+ FA A +E+R +NG++F + E+ L VA+DG Sbjct: 119 KAQSVSDNATTITLQAEKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDG--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + S ++P+K + +LS V + E ++ +++ Sbjct: 177 HKL-VRNKIFSIKSDSPASFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLA 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G++PNY +VIP N ++ ++ +L A+ RV +S Q ++ +S+ L + Sbjct: 236 CRLIEGKYPNYNSVIPQDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSAGLLELN 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y PM I F +L+I++N+ S D+VV +L + + Sbjct: 296 AEDIDFATSAKESVTCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 VIVP------GTQPENEDILMLIMPM 370 >gi|221194950|ref|ZP_03568006.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626] gi|221184853|gb|EEE17244.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626] Length = 366 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 183/387 (47%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M TV +S + L + I ++P+ V L+A +G LEI+++ + I + A+ Sbjct: 1 MNFTVSQSSLQTALDIVMKGIGSNPSLPILSGVYLKAQEGTLEIQSNDLTVSIKHKVAAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G VSA +L IV+ L D A +++ + ++ S ++L P +++P+ Sbjct: 61 VEEEGETVVSAKVLQTIVKNLPDAAITFKYEDEG----IKLTCQKSTYHLTVLPVADWPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S EL S++L +V++ + ++ + R L GIF E ++L VATD R Sbjct: 117 FPEVVPEKSIELPSALLSKMVDKIYRVVSHDVSRPILQGIFLTAEENTIRL--VATDSFR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + + I+ +A+ +L + + + ++ V +S++++ + + R Sbjct: 175 LAVCDTHTDTPTGEKFEAIISGEAIHNVLSMRTMTE-TIMVGISDNQVVFTFGNTTHVSR 233 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMT 298 I+G +P+Y+ ++ S + + A+ VS+++ AV+L + ++C + Sbjct: 234 KIEGNYPDYKKLLAPSCSTAITLPIEETSAAIKHVSVVALQNF-AVRLDIDAEGGEICFS 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G A E++ + I FNY+Y+ + ++ +S + V F L S Sbjct: 293 SSSPDQGNASETIKADVEGKSLTIGFNYQYVFDCLNALSEQK----SVRFELLSETQPAV 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+N Y+L+P+ + Sbjct: 349 FKA---------SGKINYLYLLIPVHL 366 >gi|15899951|ref|NP_344555.1| DNA polymerase III subunit beta [Streptococcus pneumoniae TIGR4] gi|148988887|ref|ZP_01820302.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] gi|148993606|ref|ZP_01823077.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68] gi|148997956|ref|ZP_01825469.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP11-BS70] gi|149003111|ref|ZP_01828020.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|149007715|ref|ZP_01831324.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP18-BS74] gi|149020160|ref|ZP_01835134.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP23-BS72] gi|168487222|ref|ZP_02711730.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|168489314|ref|ZP_02713513.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195] gi|168493998|ref|ZP_02718141.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|168576112|ref|ZP_02722017.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016] gi|169834446|ref|YP_001693436.1| DNA polymerase III subunit beta [Streptococcus pneumoniae Hungary19A-6] gi|194397554|ref|YP_002036723.1| DNA polymerase III subunit beta [Streptococcus pneumoniae G54] gi|221230950|ref|YP_002510102.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC 700669] gi|225853613|ref|YP_002735125.1| DNA polymerase III subunit beta [Streptococcus pneumoniae JJA] gi|225855737|ref|YP_002737248.1| DNA polymerase III subunit beta [Streptococcus pneumoniae P1031] gi|225857811|ref|YP_002739321.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 70585] gi|237651055|ref|ZP_04525307.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI 1974] gi|237821168|ref|ZP_04597013.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI 1974M2] gi|298229493|ref|ZP_06963174.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str. Canada MDR_19F] gi|298255937|ref|ZP_06979523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str. Canada MDR_19A] gi|298501758|ref|YP_003723698.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|303254903|ref|ZP_07340988.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455] gi|307066638|ref|YP_003875604.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae AP200] gi|307126153|ref|YP_003878184.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 670-6B] gi|18266730|sp|O06672|DPO3B_STRPN RecName: Full=DNA polymerase III subunit beta gi|14971466|gb|AAK74195.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae TIGR4] gi|147755966|gb|EDK63009.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP11-BS70] gi|147758852|gb|EDK65848.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS69] gi|147760710|gb|EDK67682.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP18-BS74] gi|147925698|gb|EDK76774.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73] gi|147927827|gb|EDK78849.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68] gi|147930838|gb|EDK81819.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP23-BS72] gi|168996948|gb|ACA37560.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae Hungary19A-6] gi|183569923|gb|EDT90451.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1087-00] gi|183572312|gb|EDT92840.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195] gi|183575839|gb|EDT96367.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC3059-06] gi|183578124|gb|EDT98652.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016] gi|194357221|gb|ACF55669.1| DNA polymerase III beta subunit [Streptococcus pneumoniae G54] gi|220673410|emb|CAR67868.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC 700669] gi|225720912|gb|ACO16766.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 70585] gi|225723086|gb|ACO18939.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae JJA] gi|225725186|gb|ACO21038.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae P1031] gi|298237353|gb|ADI68484.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A] gi|301793327|emb|CBW35686.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV104] gi|302598174|gb|EFL65235.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455] gi|306408175|gb|ADM83602.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae AP200] gi|306483215|gb|ADM90084.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 670-6B] gi|332071324|gb|EGI81819.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17545] gi|332071686|gb|EGI82179.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17570] gi|332198659|gb|EGJ12742.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41317] gi|332199069|gb|EGJ13150.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47901] Length = 378 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|296875520|ref|ZP_06899592.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 15912] gi|296433444|gb|EFH19219.1| DNA-directed DNA polymerase III beta subunit [Streptococcus parasanguinis ATCC 15912] Length = 378 Score = 272 bits (697), Expect = 5e-71, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 170/392 (43%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ + + + + S +I I I Sbjct: 3 NFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIKD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D E + +V ++ G S L+ Sbjct: 63 ENAGLLVTSPGSILLEATFFINVVSSLPDVTLDFKEIEQK---QVLLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK L+ T FA + +E R L G+ F +++ L V Sbjct: 120 ADQYPRIQEIVASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNKD-LKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +++P +++ E + S +V+V + ++I E Sbjct: 179 ATDSHRMSQKVITLEKN-GDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + E N NLR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFKNG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++G+ E ++ + + I FN YL+E + I S ++VV R S Sbjct: 298 VVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDS-----EQVVIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + ++ P+R Sbjct: 353 SVRPFTLVPEGNEQ--------GFIQLITPVR 376 >gi|149013382|ref|ZP_01834091.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP19-BS75] gi|182682972|ref|YP_001834719.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14] gi|303259728|ref|ZP_07345704.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293] gi|303262195|ref|ZP_07348140.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS292] gi|303265391|ref|ZP_07351298.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397] gi|303266061|ref|ZP_07351955.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457] gi|303268469|ref|ZP_07354263.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458] gi|147762905|gb|EDK69853.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP19-BS75] gi|182628306|gb|ACB89254.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14] gi|301800975|emb|CBW33636.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV200] gi|302636835|gb|EFL67325.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP14-BS292] gi|302639280|gb|EFL69739.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293] gi|302641970|gb|EFL72323.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458] gi|302644365|gb|EFL74618.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457] gi|302645068|gb|EFL75308.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397] Length = 378 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ + + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|34580501|ref|ZP_00141981.1| DNA polymerase III beta chain [Rickettsia sibirica 246] gi|28261886|gb|EAA25390.1| DNA polymerase III beta chain [Rickettsia sibirica 246] Length = 379 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 115/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + ++V LS ++I E+ SM Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEVLLSSNKIKFICNENTSM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDV-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|15902046|ref|NP_357596.1| DNA polymerase III subunit beta [Streptococcus pneumoniae R6] gi|116516939|ref|YP_815419.1| DNA polymerase III subunit beta [Streptococcus pneumoniae D39] gi|30315898|sp|P59651|DPO3B_STRR6 RecName: Full=DNA polymerase III subunit beta gi|2109446|gb|AAC45337.1| beta subunit of DNA polymerase III [Streptococcus pneumoniae] gi|15457530|gb|AAK98806.1| DNA biosynthesis; sliding clamp subunit, required for high processivity; DNA polymerase III beta-subunit [Streptococcus pneumoniae R6] gi|116077515|gb|ABJ55235.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae D39] Length = 378 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|312130942|ref|YP_003998282.1| DNA polymerase iii, beta subunit [Leadbetterella byssophila DSM 17132] gi|311907488|gb|ADQ17929.1| DNA polymerase III, beta subunit [Leadbetterella byssophila DSM 17132] Length = 374 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 177/386 (45%), Gaps = 17/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V +++L+ L + +I +P+ + L + + L + AS + + + + Sbjct: 1 MKFIVSSTELLKNLSYISGVIAPNPIVPILENFLFELDQNKLVVTASDMQTVMVAELDVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 SI + A LL D ++ L + + G E+ S G F + +FP Sbjct: 61 SSDVASIAIPARLLMDTLKSLPEQPITVNLNTDTFGVEIVTSTG--RFKITGENPLDFPR 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ EL S VL + T FA +T+++R + G+F I + VATDGHR Sbjct: 119 PPQVNKNFNIELNSDVLAAAINNTIFATSTDDLRPAMTGVFMDIQSDHTTF--VATDGHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + Q + +I+PRKA+ + L S V S S + ++ + R Sbjct: 177 L-IRYRRNDIQSSTDNRLILPRKALNLLKSSLPSDVVPVVTEFSSSNAFFSFGNIKLICR 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +P+Y NVIP +N +L V + + R+SI S+ ++L + ++L ++ + Sbjct: 236 LIDERYPDYDNVIPKANPYKLIVERSTFLATLKRISIFSNKTTHQIRLKMEPNELTISAE 295 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D +A+E + ++ ++I FN K+L E++ N+SS V+ L N + I Sbjct: 296 DLDYSNEAVEKIACEFDGELLEIGFNAKFLSEMLSNLSSSTVM-----MELSQPNRAGLI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +K + + ++MP+ + Sbjct: 351 VP------TSKQDNEDILMLVMPVML 370 >gi|15892506|ref|NP_360220.1| DNA polymerase III subunit beta [Rickettsia conorii str. Malish 7] gi|20137866|sp|Q92I37|DPO3B_RICCN RecName: Full=DNA polymerase III subunit beta gi|15619665|gb|AAL03121.1| DNA polymerase III beta chain [Rickettsia conorii str. Malish 7] Length = 379 Score = 272 bits (696), Expect = 6e-71, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ LS ++I E+ SM Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTSM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDV-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|325695761|gb|EGD37660.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK150] gi|332363607|gb|EGJ41388.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1059] gi|332364165|gb|EGJ41942.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK49] Length = 378 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|88854500|ref|ZP_01129167.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1] gi|88816308|gb|EAR26163.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1] Length = 381 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 82/387 (21%), Positives = 183/387 (47%), Gaps = 16/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R E + A +++ ++ T+P+ VL++A D L + + E+ I A Sbjct: 1 MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATDEGLTLSSFDYEVSARTQIKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + VS LL +I +L + ++N ++ ++ G +F L S P E+P+ Sbjct: 61 VDEPGRVLVSGKLLAEIASRLPNAPVRFSTEDN----KITVACGTGHFTLSSMPVEEYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L + + + + A + +++ + G+ +++ ++ L VATD +R Sbjct: 117 LPQISDQVG-TLKADLFSAAIAQVAVAASRDDVTPVITGVQLEVSQNNISL--VATDRYR 173 Query: 181 LAVAEVDIVAQIA--KMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESR--IHLNIESL 235 +AV +++ A + + + +VP K + E+ + +S + SV ++ ++ R I + ++ Sbjct: 174 VAVRDIEWDAGASGVESATALVPAKTLVEVGKTFGNSGEISVAITSTDERELIAFHADNK 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +++ LI G FP + + P + D +N L +AV RVS++ R A++ + +++ + Sbjct: 234 TVTSLLIKGNFPPVRRLFPETVDNFAVMNTAELIEAVRRVSLVL-EREAALRFTFTTEGV 292 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + +A E+++ + + ++L++ + ++ S+ V + Sbjct: 293 TLEAIGSEQAQASETIDAFLTGDDTVVSLKPQFLIDGLSSVHSEFVRISFTKTENPNKPG 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMP 382 V I + S ++ N Y+L P Sbjct: 353 PVLITSQ---SSKDQPGSDNYKYLLQP 376 >gi|332359495|gb|EGJ37314.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1056] Length = 378 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V++ + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S ++V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|327467737|gb|EGF13231.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK330] Length = 378 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIADG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S ++V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|270291827|ref|ZP_06198042.1| DNA polymerase III, beta subunit [Streptococcus sp. M143] gi|270279355|gb|EFA25197.1| DNA polymerase III, beta subunit [Streptococcus sp. M143] Length = 378 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ + + N+ + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVNNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S ++V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376 >gi|227873172|ref|ZP_03991463.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268] gi|227841003|gb|EEJ51342.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268] Length = 374 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 178/385 (46%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++ +++D+L L + + K T+ + +L+ A +G + + + + I P Sbjct: 1 MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIESICPGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A L +I+++L + E I S F + EF S Sbjct: 61 ILEPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDEFTS 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E++ L+N++ +T F+ A+ E + G +F I D + A DGHR Sbjct: 121 LPSVEKQEIVEISQLSLRNMINQTIFSTASGENNKKMTGEYFEII--DNQFSITALDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +A+ + ++ ++ S IVP++ + E+ +I+S + V++ S+ + + E + Sbjct: 179 IAIRKTEL-SESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTIVVT 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298 +L++GE+ + + ++ + ++R+N + +DR I++ Q + L + L + Sbjct: 238 QLVEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSLSLK 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + D+G+ M V + I FN YL++ + NI ++EV S S VF Sbjct: 298 IVS-DIGRMDAEMPVQQEGKDLLIGFNPTYLMDALQNIE-----EEEVDLYFTISRSPVF 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR +++ + Y+++P+ Sbjct: 352 IRDQEE----------SYNYMILPV 366 >gi|293364517|ref|ZP_06611242.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis ATCC 35037] gi|306826188|ref|ZP_07459523.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307702807|ref|ZP_07639757.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037] gi|315612158|ref|ZP_07887073.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis ATCC 49296] gi|331265440|ref|YP_004325070.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5] gi|291317025|gb|EFE57453.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis ATCC 35037] gi|304431664|gb|EFM34645.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp. oral taxon 071 str. 73H25AP] gi|307623663|gb|EFO02650.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037] gi|315315719|gb|EFU63756.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis ATCC 49296] gi|326682112|emb|CBY99728.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5] Length = 378 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ + + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S ++V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376 >gi|307711217|ref|ZP_07647639.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321] gi|307617179|gb|EFN96357.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321] Length = 378 Score = 272 bits (696), Expect = 7e-71, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVNSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTDEE--------FMQLITPVR 376 >gi|332077809|gb|EGI88268.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41301] Length = 378 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQ-YKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|225352381|ref|ZP_03743404.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium pseudocatenulatum DSM 20438] gi|225156888|gb|EEG70257.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium pseudocatenulatum DSM 20438] Length = 386 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 87/387 (22%), Positives = 166/387 (42%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 13 MKVEVNSQALADAVAWTTRVIDARPASPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 72 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD GSI V LL DI + L G+ + I+ G S F +Q P++E+P Sbjct: 73 VDESGSILVLGKLLADITKSLPAAKTYLSTD----GSTLTITSGKSTFTMQLMPDNEYPD 128 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 A + + + + A++ EE R L GI K+ +TD R Sbjct: 129 LPVVPAKLGQVDAQTFAQAVAQA-SVAVSREENRPVLTGIRVQFQGN--KVIMSSTDRFR 185 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237 L+ + + + + + R A+ + + ++ V + Sbjct: 186 LSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVVDFDPENPSLLGFENAGRVS 245 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + +N +L A+ RVS+++ R ++++ +S +L + Sbjct: 246 TSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVA-ERNAPIRMAFTSQELTL 304 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T + D +A E +++ + + + FN YL+E + IS + V ++ ++ V Sbjct: 305 TAGSVDEAQAKEILDIDMDGEDITVAFNPAYLIEGLSAIS-----EPFVRMKMTTAVKPV 359 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + +N + ++ Y+L+PMR Sbjct: 360 EFNGQQE---SNSEESMDYRYLLVPMR 383 >gi|148984546|ref|ZP_01817834.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71] gi|225860014|ref|YP_002741523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae Taiwan19F-14] gi|147923323|gb|EDK74437.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71] gi|225727256|gb|ACO23107.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae Taiwan19F-14] gi|301799151|emb|CBW31663.1| DNA polymerase III, beta chain [Streptococcus pneumoniae OXC141] gi|327388987|gb|EGE87335.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA04375] Length = 378 Score = 272 bits (695), Expect = 8e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIEAVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|168484306|ref|ZP_02709258.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|172042453|gb|EDT50499.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC1873-00] gi|332198866|gb|EGJ12948.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47368] Length = 378 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|306828595|ref|ZP_07461789.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis ATCC 6249] gi|304429203|gb|EFM32289.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis ATCC 6249] Length = 378 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 173/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ + + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F ++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLS-NHKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLR +++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRHSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGNDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376 >gi|50953927|ref|YP_061215.1| DNA polymerase III subunit beta [Leifsonia xyli subsp. xyli str. CTCB07] gi|50950409|gb|AAT88110.1| DNA polymerase III, beta subunit [Leifsonia xyli subsp. xyli str. CTCB07] Length = 381 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 166/388 (42%), Gaps = 18/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK R E + A +++ ++ T+P+ VL++ + L++ + E+ I A Sbjct: 1 MKFQANRDVFSEAVSFAVKLLPQRTTLPILSGVLIETTENGLQLSSFDYEVSAQTKIAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + VS LL +I KL + +E +++ + G +NF L S P E+PS Sbjct: 61 VEETGRVLVSGRLLAEIAAKLPNAPVQFSTEE----SKIIVKAGSANFTLLSMPVEEYPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A + +++ + G+ + + L L VATD +R Sbjct: 117 IPDVSGEAGLV-PAEEFAEAVAQVGVAASRDDVTPVITGVQLEVGDNTLGL--VATDRYR 173 Query: 181 LAVAEVDIVAQI--AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234 +AV E+D + + +VP + + EI + L +V ++++ I + Sbjct: 174 VAVREIDWDNGTTLGETKTALVPARTLTEIGKTLGHS-GTVSIAITNRDDRELIAFTDDR 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +++ LI G FP + + P + +N L +A RVS++ R A++ + ++D Sbjct: 233 KTVTSLLIKGNFPPVRRLFPDQVENHAVMNTAELIEATRRVSLVL-EREAALRYTFTADG 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + +A ES++ + ++LL+ + + S+ V + Sbjct: 292 LTLEAIGSEQAQASESIDALLTGQETVVSLKPQFLLDGLGAVHSEFVRISFTKTENPNKP 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 V I + + D + Y+L P Sbjct: 352 GPVLITSQTSKDQAGAD---SYKYLLQP 376 >gi|307710360|ref|ZP_07646801.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564] gi|307618952|gb|EFN98087.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564] Length = 378 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ ++ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFIQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|328945175|gb|EGG39330.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1087] Length = 378 Score = 272 bits (695), Expect = 9e-71, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEITGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S ++V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|322515791|ref|ZP_08068736.1| DNA-directed DNA polymerase III beta subunit [Streptococcus vestibularis ATCC 49124] gi|322125753|gb|EFX97071.1| DNA-directed DNA polymerase III beta subunit [Streptococcus vestibularis ATCC 49124] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 183/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISASE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ ++V L D ++ E +V + G S L+ Sbjct: 63 ENAGLLITRPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + VLK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 VEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + + +++P +++ E+ + S ++++ S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 NVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKS-----ETVRVRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|190410684|ref|YP_001965254.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1] gi|84872699|gb|ABC67436.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1] Length = 372 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 169/387 (43%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK+ ++ +D+ + +A R + + PV +LL A D L I+A E+ +PA Sbjct: 1 MKLRIDHADLAAAVCYAARTLPSRPPAPVLAGLLLDATGDERLRIRAFDYEVSADTTVPA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G V LL DI L+D + + GT + + G + F L P E+P Sbjct: 61 AITTPGRALVPGRLLADITTTLRDDVHL-----DLDGTRLTLRAGSARFTLPLLPLEEYP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + L++ V + A++ EE L GI + E L ATD + Sbjct: 116 TLPE-PGDVTGTLSAPAFAEAVAQVACAVSREEALPVLTGISLRHDHEASTLTLSATDRY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH-LNIESLSMS 238 R AV + ++P +A+ + + + + V + S + L E + + Sbjct: 175 RYAVRTLPWKDAHLPDTGAVIPGRALLDAAKAAAGDATVDLVLPARSGLFALRGEQHTTT 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCM 297 +R +DGE P Y ++ P V L+ AV RV+++S + ++++ + L + Sbjct: 235 IRALDGELPKYASLFPTEFAHTATVEIDALKAAVQRVALVSPKKDGPIRMTFAGDGTLVL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A+++++ + + I FN +LL+ + +++ + V F SS Sbjct: 295 ESGSGDDAQALDAVDTALDGAELTIAFNPAFLLDGLSALTA-----ESVRFDFTSSTKPA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + G D + + Y+LMP+R Sbjct: 350 VLSGHGSDDQALR-------YLLMPIR 369 >gi|306826409|ref|ZP_07459723.1| DNA-directed DNA polymerase III beta subunit [Streptococcus pyogenes ATCC 10782] gi|304431404|gb|EFM34399.1| DNA-directed DNA polymerase III beta subunit [Streptococcus pyogenes ATCC 10782] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + ++ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETKVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|157964502|ref|YP_001499326.1| DNA polymerase III subunit beta [Rickettsia massiliae MTU5] gi|157844278|gb|ABV84779.1| DNA polymerase III beta chain [Rickettsia massiliae MTU5] Length = 379 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGEFTVSTKTLNDIVRKLPDSEL---TLTDRGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ LS ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|21909538|ref|NP_663806.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS315] gi|28894914|ref|NP_801264.1| DNA polymerase III subunit beta [Streptococcus pyogenes SSI-1] gi|21903718|gb|AAM78609.1| beta subunit of DNA polymerase III [Streptococcus pyogenes MGAS315] gi|28810159|dbj|BAC63097.1| putative DNA polymerase III beta subunit [Streptococcus pyogenes SSI-1] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D I+ + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ININVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPGKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|168491772|ref|ZP_02715915.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC0288-04] gi|183573995|gb|EDT94523.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae CDC0288-04] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQ-YKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + N NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S++ V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D N ++ P+R Sbjct: 353 AVRPFTLVPADTD--------ENFMQLITPVR 376 >gi|322388481|ref|ZP_08062084.1| DNA-directed DNA polymerase III beta subunit [Streptococcus infantis ATCC 700779] gi|321140794|gb|EFX36296.1| DNA-directed DNA polymerase III beta subunit [Streptococcus infantis ATCC 700779] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IPV + + + + + S +I I I Sbjct: 3 HFSINKNLFLQSLNITKRAISSKNAIPVLSTIKIDVTNEGITLIGSNGQISIENFISQKD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ GSI + A ++V L D E ++ ++ G S L+ Sbjct: 63 ENAGLLINSLGSILLEASFFINVVSSLPDVTLDFKEIEQH---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA + +E R L G+ F ++ +L V Sbjct: 120 SEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLS-NHKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKN-SDNFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERARLLSSATQNGTVKLEIKQG 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + + + I FN YL+E + ++S++ V S Sbjct: 298 VVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|94993398|ref|YP_601496.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10750] gi|94546906|gb|ABF36952.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10750] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIQALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|322392424|ref|ZP_08065884.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris ATCC 700780] gi|321144416|gb|EFX39817.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris ATCC 700780] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 179/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IPV + + N+ + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPVLSTIKIDVNNEGITLIGSNGQISIENFISQKD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ GSI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 ENAGLLINSLGSILLEASFFINVVSSLPDVTLDFKEIEQD---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA + +E R L G+ F ++ +L V Sbjct: 120 SEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLS-NHKELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKN-SDNFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERSRLLSSATQNGTVKLEIKQG 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ + + + I FN YL+E + ++S++ V S Sbjct: 298 VVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|312864131|ref|ZP_07724366.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396] gi|311100363|gb|EFQ58571.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 183/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISASE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ ++V L D ++ E +V + G S L+ Sbjct: 63 ENAGLLITRPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + VLK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 VEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + + +++P +++ E+ + S ++++ S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNSSQSGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 NVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKS-----ETVRVRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|228476802|ref|ZP_04061450.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126] gi|228251539|gb|EEK10676.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126] Length = 378 Score = 271 bits (694), Expect = 1e-70, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I S Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISVSE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ ++V L D ++ E +V + G S L+ Sbjct: 63 ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + VLK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 VEQYPRIQEVDSLTPLLMDTKVLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + A +++P +++ E+ + S +++V S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDDIENLEVFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 SVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKS-----ETVRVRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|11320911|gb|AAG33951.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 108/383 (28%), Positives = 207/383 (54%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ L + R I + + P+ +VL+ + +L + A+ EIE+ I S Sbjct: 1 MKFNIKNNIFVQHLQNVNRFITKNTSFPILENVLISIKNRILSLTATNLEIELISNIELS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V GSITVS+ L I R + + I N ++++ S++ L + P +FP Sbjct: 61 KHYVPGSITVSSRKLLQICRNSLNSSNIQVELHN---NKMHVISEKSHYILNTLPSDDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y+ F + S +LK ++E+THF+M +++RYYLNG+ F I + L + VATDG+ Sbjct: 118 NHNNXCYISEFTIQSKILKEMIEKTHFSMGKQDVRYYLNGMLFKIXDNSLHI--VATDGY 175 Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL ++ + +I K SII+ RK + E+ ++L+S VKV + S I + IE L + Sbjct: 176 RLGTSKTLLTKEEIIKNFSIIIARKGITELYKLLNSSTQLVKVFIGRSNIRIYIEQLIFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY+++ + + +NC L+Q++ R +I++ + +++ ++ D+ + Sbjct: 236 AQLIEGKFPNYESIFLKKKNNGIILNCQLLKQSLLRAAILAHEKFCGIEIHVNKDQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ ++ Y ++I N Y+L+I++ I+S ++ + SN+S+ Sbjct: 296 SDNQEEETAEDTFDINYIGPSIEISINVYYILDILNVINSK-----NILLFPNYSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + N + Y++M Sbjct: 351 IEAE---------NDASTIYIVM 364 >gi|78101467|pdb|2AWA|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution gi|78101468|pdb|2AWA|B Chain B, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution gi|78101469|pdb|2AWA|C Chain C, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution gi|78101470|pdb|2AWA|D Chain D, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec 2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae Tigr4 At 2.50 A Resolution Length = 390 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 175/391 (44%), Gaps = 27/391 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 ++ ++ L+ L R I KN IP+ V + + + + S +I I I + Sbjct: 16 FSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKNE 75 Query: 63 VCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 76 DAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKDS 132 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L VA Sbjct: 133 EQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTVA 191 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD HRL+ ++ + +++P +++ E + + +V++ + ++I E++ Sbjct: 192 TDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSENI 250 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDK 294 S RL++G +P+ +IP + + N NLRQ+ +R ++SS + VKL + Sbjct: 251 SFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSXERARLLSSATQNGTVKLEIKDGV 310 Query: 295 LCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + V +P++GK E ++ + I FN YL++ + ++S++ V S+ Sbjct: 311 VSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFISA 365 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D D + ++ P+R Sbjct: 366 VRPFTLVPADTD--------EDFXQLITPVR 388 >gi|94989511|ref|YP_597611.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10270] gi|94543019|gb|ABF33067.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10270] Length = 378 Score = 271 bits (693), Expect = 1e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLENTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|15674252|ref|NP_268425.1| DNA polymerase III subunit beta [Streptococcus pyogenes M1 GAS] gi|71909816|ref|YP_281366.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS5005] gi|13621327|gb|AAK33147.1| beta subunit of DNA polymerase III [Streptococcus pyogenes M1 GAS] gi|71852598|gb|AAZ50621.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS5005] Length = 378 Score = 271 bits (693), Expect = 2e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|50913348|ref|YP_059320.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10394] gi|139472890|ref|YP_001127605.1| DNA polymerase III subunit beta [Streptococcus pyogenes str. Manfredo] gi|50902422|gb|AAT86137.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS10394] gi|134271136|emb|CAM29346.1| DNA polymerase III, beta chain [Streptococcus pyogenes str. Manfredo] Length = 378 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|56808864|ref|ZP_00366575.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Streptococcus pyogenes M49 591] gi|71902669|ref|YP_279472.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS6180] gi|94987633|ref|YP_595734.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS9429] gi|94991499|ref|YP_599598.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS2096] gi|209558589|ref|YP_002285061.1| DNA polymerase III subunit beta [Streptococcus pyogenes NZ131] gi|71801764|gb|AAX71117.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS6180] gi|94541141|gb|ABF31190.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS9429] gi|94545007|gb|ABF35054.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS2096] gi|209539790|gb|ACI60366.1| Beta subunit of DNA polymerase III [Streptococcus pyogenes NZ131] Length = 378 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|21672305|ref|NP_660372.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] gi|232008|sp|P29439|DPO3B_BUCAP RecName: Full=DNA polymerase III subunit beta gi|144150|gb|AAA73150.1| dnaN [Buchnera aphidicola] gi|2827015|gb|AAC38107.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|21622904|gb|AAM67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg (Schizaphis graminum)] Length = 366 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 208/382 (54%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++ + + L R++ + + P+ ++L+Q DG L + + EIE+ I Sbjct: 1 MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T+S + +I R L + ++I +N+ ++ IS +SN+ L + FP Sbjct: 61 TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNK---KMYISSENSNYILSTLSADTFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + +Y+ F+++S++LK ++E+T F+M +++RYYLNG+ ++ L+ +VATDG+ Sbjct: 118 NHQNFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLEKKDKFLR--SVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + I SII+P KAV E+L++L+++ + + + + I + ++L + Sbjct: 176 RLAISYTQLKKDI-NFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++V+ + N L++++ RV+I++ + +++ + + K + Sbjct: 235 QLIEGEYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + + Y ++I N YLL++I+NI S + + L+ S SS+ I Sbjct: 295 DNQEEETAEDLFEIDYFGEKIEISINVYYLLDVINNIKS-----ENIALFLNKSKSSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 ++ S YV+M Sbjct: 350 EAENNSSNA---------YVVM 362 >gi|148269798|ref|YP_001244258.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1] gi|281412318|ref|YP_003346397.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10] gi|147735342|gb|ABQ46682.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1] gi|281373421|gb|ADA66983.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10] Length = 366 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 185/387 (47%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKITV ++ + + A + + +K+ P+ L + DG I + E + + A Sbjct: 1 MKITVTTLELRDKITIASKALAKKSVKPILAGFLFEVKDGNFYICTTDLETGVKATVNAA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V ++ +V+ L D + G + IS G + F + + P EFP Sbjct: 61 EISGEARFVVPGDIIQKLVKVLPDEITELSLE----GDVLVISSGSTVFRITTMPADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +FE+ S+L+ +VE+ FA A +E LNG+F+ +++ L+L VA+DG Sbjct: 117 EITPAESGITFEVDISLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 RLA+AE + + S ++ K++ E+ +L + + V R+ L + Sbjct: 175 RLALAEE--QIENEEETSFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLTTNDVETV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +R++D EFP+Y+ VIP + ++ V+ +L +++ RV +++S ++VK + + + + Sbjct: 233 MRVVDAEFPDYKRVIPETFKTKVVVSRKDLMESLKRVMVIASKGSESVKFEIEENVMRLV 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G+ I+ + V + I FN K++ +++ +I + +E+ S S Sbjct: 293 SKSPDYGEVIDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D Y++MP+R+ Sbjct: 348 INPLD---------ISGYLYIVMPIRL 365 >gi|157828455|ref|YP_001494697.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165933170|ref|YP_001649959.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. Iowa] gi|157800936|gb|ABV76189.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila Smith'] gi|165908257|gb|ABY72553.1| DNA polymerase III, beta chain [Rickettsia rickettsii str. Iowa] Length = 379 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 112/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ L+ ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|67459041|ref|YP_246665.1| DNA polymerase III subunit beta [Rickettsia felis URRWXCal2] gi|75536523|sp|Q4ULS3|DPO3B_RICFE RecName: Full=DNA polymerase III subunit beta gi|67004574|gb|AAY61500.1| DNA polymerase III beta chain [Rickettsia felis URRWXCal2] Length = 379 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G +TVS L DIVRKL D + T + I + F L + P S FP Sbjct: 63 VSEGELTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPPM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ LS ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|52142810|ref|YP_084019.1| DNA polymerase III subunit beta [Bacillus cereus E33L] gi|51976279|gb|AAU17829.1| DNA polymerase III, beta subunit [Bacillus cereus E33L] Length = 376 Score = 270 bits (692), Expect = 2e-70, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDKQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S R V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASERANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++V + ++I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374 >gi|296271493|ref|YP_003654125.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833] gi|296094280|gb|ADG90232.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833] Length = 364 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 161/385 (41%), Gaps = 25/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V R + + + R++ ++T+P +LL+A+ L I E+ I A Sbjct: 1 MKIRVNRDVLADAVAWTARLLPGRSTVPALSGLLLEADAD-LRISVFDYEVSAWAQIEAD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + +L +I + L D + G E ++ G + L P+ +FPS Sbjct: 60 VAAPGRVLIPGRVLAEITKSLPDRPVDLY----RDGGEAVLTCGSLEYDLLVLPDEDFPS 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V + + A + ++ L G+ I + +++ ATD +R Sbjct: 116 LPAMPPKAGAVG-GGVFASAAGQVAAAASRDDSLPMLTGVRIDI--DGVRVSMAATDRYR 172 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A E + ++VP + + E R L ++ + + L E+ I L + ++ V Sbjct: 173 IAAREFLWHPERPDERRGVVVPARLLVEAARSL--REGEISIGLGENVIGLRNQDRTVIV 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL+D +F +Y++ + + +AV RV++++ V+L+ S ++ + Sbjct: 231 RLLDDQFIDYRSRLSEQWPIHADLALAPFVEAVKRVTLVAEPNT-PVRLAFSPGQVLIRA 289 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +G++ E + + +DI F +LL+ + + + + V + + + I Sbjct: 290 GGGSIGRSTEIVAAELDGPDIDIAFQPHFLLDGLAGVET-----ERVRLHMATPTRAALI 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + D Y++MP+R Sbjct: 345 TEEGDDPA--------FRYLVMPVR 361 >gi|229586697|ref|YP_002845198.1| DNA polymerase III subunit beta [Rickettsia africae ESF-5] gi|228021747|gb|ACP53455.1| DNA polymerase III beta chain [Rickettsia africae ESF-5] Length = 379 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLLAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ LS ++I E+ SM Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTSM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDV-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|228915297|ref|ZP_04078890.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228844240|gb|EEM89298.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 380 Score = 270 bits (691), Expect = 2e-70, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 5 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 65 IDDEQITTILQVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 178 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 179 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++V + ++I F+ +++L+ + I ++ V Sbjct: 297 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 352 SFSGSMRPILIEAGTQSA---------AIHLISPVR 378 >gi|157825704|ref|YP_001493424.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford] gi|157799662|gb|ABV74916.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford] Length = 379 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 206/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G +TVS L DIVRKL D I + T + I + F L + P S FP+ Sbjct: 63 VSEGELTVSTKTLNDIVRKLPDSELILT---DLGTTGLEIKGKNCKFNLFTLPVSSFPTM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ LS ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEMLLSSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLVIGFNPQYLEDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|327463835|gb|EGF10151.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1057] Length = 378 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIVGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S ++V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|42781777|ref|NP_979024.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987] gi|42737700|gb|AAS41632.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] Length = 376 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + AN + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAFIPILSGIKITANQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I + L Sbjct: 61 MDDEQITTTLQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP SEFP+ + E ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPASEFPNVPQIEDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDYN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETQISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN ++IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ + E + I F+ +++L+ + I ++ V Sbjct: 293 NESTIKVSSNASQIGKIYETQQVDAIHGEKQLHISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374 >gi|19745203|ref|NP_606339.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS8232] gi|19747292|gb|AAL96838.1| beta subunit of DNA polymerase III [Streptococcus pyogenes MGAS8232] Length = 378 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNATKRAISTKNAIPILSSIKIKVTPTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|196032677|ref|ZP_03100091.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|218903815|ref|YP_002451649.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228927740|ref|ZP_04090788.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] gi|228946302|ref|ZP_04108629.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|229122239|ref|ZP_04251453.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] gi|195995428|gb|EDX59382.1| DNA polymerase III, beta subunit [Bacillus cereus W] gi|218538894|gb|ACK91292.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|228661088|gb|EEL16714.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] gi|228813352|gb|EEM59646.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228831803|gb|EEM77392.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pondicheriensis BGSC 4BA1] Length = 376 Score = 270 bits (691), Expect = 3e-70, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILQVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++V E ++I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGEKQLNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374 >gi|229011945|ref|ZP_04169125.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048] gi|228749359|gb|EEL99204.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048] Length = 376 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 96/396 (24%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I + KL Sbjct: 117 LSANEFPNVPFLDSHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E+ I + + IVP + E+L+++SS + V + LSES I Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMSSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ + E ++I F+ +Y+++ + I +D V Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|324326663|gb|ADY21923.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 376 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 94/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIKKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILKVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDYN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++V + ++I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374 >gi|322375217|ref|ZP_08049731.1| DNA polymerase III, beta subunit [Streptococcus sp. C300] gi|321280717|gb|EFX57756.1| DNA polymerase III, beta subunit [Streptococcus sp. C300] Length = 378 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ + + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + + ++V L D E + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLESSFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA +T+E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S ++V S Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|222099398|ref|YP_002533966.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359] gi|221571788|gb|ACM22600.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359] Length = 366 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 96/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI ++ + + A + + +K+ PV L + +G I A+ E + ++ A Sbjct: 1 MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLETGVKASVNCA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V +L +V+ L D + G + I+ G + F + + P EFP Sbjct: 61 EISGDARFVVPGDVLQKLVKVLPDETTELSLE----GDNLVITSGSTVFRITTMPADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E SFE+ +S+L+ +VE+ FA AT+E LNG+F+ +++ L+L VA+DG Sbjct: 117 DIAPAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRL--VASDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238 RLA+AE + + + ++ K++ E+ +L++ V V R+ L + Sbjct: 175 RLALAEE--QIENEEETNFLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTNDVETV 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +R++D EFP+Y+ VIP + ++ V+ +L++++ RV +++S ++VK + + + + Sbjct: 233 MRVVDAEFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENTMRLV 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +PD G+ I+ + V + I FN K++++ + I + +E+ S S Sbjct: 293 SRSPDYGEVIDELEVQKEGEDLIIAFNPKFIVDALRRIET-----EELEMNFVDSTSPCQ 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D Y++MP+R+ Sbjct: 348 INPLD---------ISGYIYIVMPIRL 365 >gi|292557466|gb|ADE30467.1| DNA polymerase III, beta subunit [Streptococcus suis GZ1] Length = 378 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 3 QFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSHGQISIEHFISIQD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A ++V + D E + ++ ++ G S L+ Sbjct: 63 ENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK---QIVLTSGKSEITLKGKE 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + VLK + T FA +T+E R L G+ F + E L V Sbjct: 120 AEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + ++++P +++ E + + +V+V S ++I E Sbjct: 179 ATDSHRMSQRKLVLDTS-GDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + NLR +++R ++S+ + VKL ++++ Sbjct: 238 ISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIANN 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ V + + I FN YL+E + +S ++V S Sbjct: 298 VVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTS-----EQVKISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + ++ + ++ P+R Sbjct: 353 SVRPFTLIPNNE--------GEDFIQLVTPVR 376 >gi|327490339|gb|EGF22126.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sanguinis SK1058] Length = 378 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S ++ I I Sbjct: 3 HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V+ GSI + A ++V L D I FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + + +V+V + ++I E+ Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP L N ++LR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIIGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + I FN YL++ + I S++ V S Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + N ++ P+R Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376 >gi|325854307|ref|ZP_08171506.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A] gi|327313529|ref|YP_004328966.1| DNA polymerase III subunit beta [Prevotella denticola F0289] gi|325484101|gb|EGC87035.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A] gi|326944906|gb|AEA20791.1| DNA polymerase III, beta subunit [Prevotella denticola F0289] Length = 374 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 178/386 (46%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + + L R+I KN++P+ L + +DG L I AS E + G + Sbjct: 1 MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEVHDGQLTITASDSENIMRGTLNLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G V+ H + D V++L + E+ V +G NF + E+P Sbjct: 61 NCEGEGDFAVNNHTILDAVKELPEQPLALNVNMEEMKIYVTYQNGSYNFPILG--ADEYP 118 Query: 120 ST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + + + L + + R+ FA A +E+R +NGI+F + E+ L VA+DG Sbjct: 119 KVQPMSETATTVTIGAEKLSDSLTRSLFATAQDELRPVMNGIYFDLKEDG--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + ++P+K + +LS V + + ++ +++ Sbjct: 177 HKL-VRNRNFSVKSETPAAFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLA 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G++PNY +VIP N ++ ++ +L A+ RV +S Q ++ +SS L + Sbjct: 236 CRLIEGKYPNYNSVIPLDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSSGLLELN 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y PM I F +L+I++N+ S D+VV +L + + Sbjct: 296 AEDIDFSTSAKESIVCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 VIVPA------VQPENEDVLMLIMPM 370 >gi|238650892|ref|YP_002916748.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic] gi|238624990|gb|ACR47696.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic] Length = 379 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K II+P+K+ EIL+I+ + +++ L+ ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGIILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|88192167|pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase Of Streptococcus Pyogenes gi|88192168|pdb|2AVT|B Chain B, Crystal Structure Of The Beta Subunit From Dna Polymerase Of Streptococcus Pyogenes Length = 378 Score = 270 bits (690), Expect = 3e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSADFM-VVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|302345412|ref|YP_003813765.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC 25845] gi|302150115|gb|ADK96377.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC 25845] Length = 374 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 96/386 (24%), Positives = 179/386 (46%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + + L R+I KN++P+ L + +DG L I AS E + G + Sbjct: 1 MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEVHDGQLIITASDSENVMRGTLNLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ V+ H + D V++L + +E+ V +G NF + E+P Sbjct: 61 SCEGEGNFAVNNHTILDAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPILG--ADEYP 118 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + L + L + + R+ FA A +E+R +NG++F + E+ L VA+DG Sbjct: 119 KAQSVSDNATTITLQAEKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDG--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + S ++P+K + +LS V + E ++ +++ Sbjct: 177 HKL-VRNKIFSIKSDSPASFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLA 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G++PNY +VIP N ++ ++ +L A+ RV +S Q ++ +S L + Sbjct: 236 CRLIEGKYPNYNSVIPQDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSVGLLELN 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y PM I F +L+I++N+ S D+VV +L + + Sbjct: 296 AEDIDFATSAKESVTCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 VIVP------GTQPENEDILMLIMPM 370 >gi|225869489|ref|YP_002745436.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi 4047] gi|225698893|emb|CAW91874.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi 4047] Length = 378 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 3 QFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 S++P +E L + +LK+++ T FA + +E R L G+ +++ AV Sbjct: 120 VSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKN-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S++ + Sbjct: 179 ATDSHRMSQRLITLEKTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E N +LR A++R ++S+ + VKL + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIEAN 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ V++P++GK E ++V + I FN YL+E + I S + V S Sbjct: 298 RISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + + ++ P+R Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376 >gi|229017981|ref|ZP_04174857.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] gi|229024202|ref|ZP_04180665.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|228737094|gb|EEL87626.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|228743250|gb|EEL93374.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] Length = 376 Score = 270 bits (690), Expect = 4e-70, Method: Composition-based stats. Identities = 98/396 (24%), Positives = 180/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I KN IP+ + + AN + + AS I I IP+S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKNLIPILSGIKITANPSGITLIASNSNIFIEKFIPSS 60 Query: 61 VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEGVQITTIVKAGSIVVPAKYFIEIIKKMPSDILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F +EFP+ + ++ + L + ++T FA A E R L G+ F I + KL Sbjct: 117 FSANEFPNVPFIDEHAEIQVETEQLIEVFKQTVFAAAKNESRPVLTGVHFVI--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E+ I + + IVP + E+L++++S + V + LSES I Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKQILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ E ++I F+ +Y+++ + I +D V Sbjct: 293 DESTIQISSNASQIGKISETQQIDTILGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPIVIEAGEQSA---------AVYLISPVR 374 >gi|241895508|ref|ZP_04782804.1| DNA-directed DNA polymerase III, beta chain [Weissella paramesenteroides ATCC 33313] gi|241871254|gb|EER75005.1| DNA-directed DNA polymerase III, beta chain [Weissella paramesenteroides ATCC 33313] Length = 376 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 80/394 (20%), Positives = 180/394 (45%), Gaps = 30/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ R+ ++ + + R I + ++ + + L ++ L + S +I I IPA+ Sbjct: 1 MEFTINRAAFIKAMNNVNRAISSRTSMTILKGIKLVLDETGLILTGSNTDISIEILIPAN 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + G+I + A +IV++L +F N G + I+ ++ F + Sbjct: 61 DDEAKLQIMEPGAIVLPATFFSNIVKRLPGE---TFKLTNASGLQTKITSENAEFDINGQ 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + +P E E L++ L ++ +T A++ + + L G+ F + +L A Sbjct: 118 DANNYPHLPEVEVRNDLTLSADTLNEVIGQTVIAVSKQLSQPILTGVHFILASGNLT--A 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRLA V IIVP ++ ++ +L + +V V ++E+++ + Sbjct: 176 VATDRHRLAQRSVAFD-DSDVNADIIVPGTSLTQLQAML-DEVENVDVRVAENQVIFQLG 233 Query: 234 -SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 + + RL++G +P+ +IP L +N +L Q ++R +++S R ++ +++ Sbjct: 234 ENTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVIQFAIT 293 Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S+K ++ ++P++G+ E + + I FN Y+ E + + D+++ Sbjct: 294 SEKSLISSNSPEVGRVEEQIFAAETAGDDLTISFNPDYMREALRSFG-----DEQIQIGF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ + + ++ N ++ P+R Sbjct: 349 KTALDPFTLVPTNNET--------NFIQLITPVR 374 >gi|261338545|ref|ZP_05966429.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM 20093] gi|270276566|gb|EFA22420.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM 20093] Length = 374 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 167/388 (43%), Gaps = 21/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ V L+A DG L + A EI I A Sbjct: 1 MKVEVNSTSLADAAAWTTRVIDSRPNSPILAGVKLEAKDGALFLSAFNYEISARDRIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L + G+ + I+ G S F +Q PESE+P Sbjct: 61 VDEPGAVVVLGKLLTDISKMLPSEKTYLATE----GSTLRITSGKSTFTMQLMPESEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A++ + R L + + E + L +TD +R Sbjct: 117 LPQLPPQIGQV-DAETFAQAVAQAVVAVSHDGTRQVLTAVRMQCDGERVTLS--STDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESR---IHLNIESLS 236 L+ A + + + R + +I R L + +V +S S + + Sbjct: 174 LSRALFHWTPDDNDINATALIRGTHLRDISRSL-DEHQNVVISFDPSNPTLLGIQNAGRI 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +V+LIDGEFP + V L A+ RVS+++ R + +++ + +++ Sbjct: 233 STVQLIDGEFPAVDRLYADEYPIHAVVERQQLISAIKRVSLVA-GRNEPIRMIFTGEEVT 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 MT D +A E ++V + + + FN YL+E I I + V ++ ++ Sbjct: 292 MTAGAADESQAREILDVDLDGEDITVAFNPNYLIEGISAI-----TEPYVRMKMTTAVKP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V D +++ D +N Y+L+PMR Sbjct: 347 VEF---DGQQEHDSDESMNYRYLLVPMR 371 >gi|313889501|ref|ZP_07823147.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN 20026] gi|313122113|gb|EFR45206.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN 20026] Length = 377 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 172/392 (43%), Gaps = 28/392 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ RS ++ L R I KN IPV + ++ + + + S +I I IP S Sbjct: 3 QFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIENIIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D E+ +V ++ G S L+ Sbjct: 63 ENAGLLISSTGAILLEASFFINIISSLPDLTLDFKEIEHH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA +T+E R L G+ + + AV Sbjct: 120 VEQYPRLQEVSTDNPLILETKLLKSIISETAFAASTQESRPILTGVHLTLK-DHKAFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +++P +++ E + + +V++ S S+I + Sbjct: 179 ATDSHRMSQRLLTLEKSATD-FDVVIPSRSLREFTSVFTDDIETVEIFFSPSQILFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E N LR A++R ++S+ + VKL ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEITET 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E + V + I FN YL+E + + ++ V R S Sbjct: 298 SVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKALK-----NETVRIRFVS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ ++ P+R Sbjct: 353 PVRPFTLTSDDEE---------GFIQLITPVR 375 >gi|118478062|ref|YP_895213.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al Hakam] gi|196043398|ref|ZP_03110636.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|225864666|ref|YP_002750044.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|229184910|ref|ZP_04312101.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1] gi|118417287|gb|ABK85706.1| DNA polymerase III beta subunit family protein [Bacillus thuringiensis str. Al Hakam] gi|196025707|gb|EDX64376.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|225789614|gb|ACO29831.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102] gi|228598563|gb|EEK56192.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1] Length = 376 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLINSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++V + ++I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374 >gi|291539807|emb|CBL12918.1| DNA polymerase III, beta subunit [Roseburia intestinalis XB6B4] Length = 344 Score = 269 bits (689), Expect = 4e-70, Method: Composition-based stats. Identities = 72/359 (20%), Positives = 166/359 (46%), Gaps = 24/359 (6%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 + + +L+ A+ +++ A+ E+ I I + G I + A + +IVRKL D Sbjct: 1 MAILECILIDASANEIKLTANDMELGIETKIEGEIAERGVIALDAKIFSEIVRKLPDSDV 60 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF 146 E + + I+ + F + +F E ++ LK ++ +T F Sbjct: 61 ---TIETDASFKTTITCEKAKFNIVGKSGDDFSYIPYIERNEPIVMSQFTLKEVIRQTIF 117 Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206 ++A + + G F I E DLK+ V+ DGHR+++ +++ + ++VP K + Sbjct: 118 SIADNDNNKLMTGELFEIEENDLKV--VSLDGHRISIRNIELKNNYS-HKKVVVPGKTLQ 174 Query: 207 EILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 E+ +IL + V + L+++ I E+ ++ RLI+GE+ + ++ + ++++N Sbjct: 175 EVSKILPGSAEDEVCIFLTDNHIVFEFENTTVVSRLIEGEYFKIEQMLSSDYETKVKINK 234 Query: 266 TNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 L +DR +++ + + ++++ + + + N +G E +++ + I F Sbjct: 235 RELLDCIDRATLLVKEGDKKPIIMNITDGTMELKI-NSFIGSMNEDIDIAKEGKDILIGF 293 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 N K+ ++ + I ++EV + + + FI KD++ Y+++P+ Sbjct: 294 NPKFFIDALRVID-----EEEVTLYMVNPKAPCFI----------KDDEGTFIYLILPV 337 >gi|81251105|gb|ABB69900.1| DNA polymerase III beta chain [Nitrosomonas sp. OZK11] Length = 373 Score = 269 bits (689), Expect = 5e-70, Method: Composition-based stats. Identities = 113/393 (28%), Positives = 194/393 (49%), Gaps = 30/393 (7%) Query: 1 MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AI 57 MK+T+ R + + L I+ER++T+P+ + L++ +G L + + EIE +I Sbjct: 1 MKLTITNRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGKLTLVTTDLEIEAEAISSI 60 Query: 58 PASVDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 P ++ G+ TVS L DI+R L I + + I G S F LQ P Sbjct: 61 P-ELENQGTLQTTVSVKKLQDILRALPANTAIELTRSE---NRLQIVSGKSRFSLQLLPA 116 Query: 116 SEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +FP E S+ L V K ++R AMA +++RYYLNG+ I ED K+ Sbjct: 117 EDFPRMIRDNEPCSMSYTLPQRVFKKQLQRVSHAMAQQDLRYYLNGLLLLI--EDNKMTL 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 ATD HRL + + + K + I+PRK V E++R L D V++ + ++ Sbjct: 175 AATDTHRLGITSIALKGNFEKSET-IIPRKTVLELIRQLEDSDRPVEIEIYPKKVCFRFP 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLS 291 + ++I G+F +++ IP ++ VN + A+ R +I+SS + V L+++ Sbjct: 234 DAVLISKVISGKFLDFRRAIPQTSVFRFDVNRLDFFHALQRTAIISSSNDLFRNVHLNIT 293 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 S KL ++ N + +A E + + Y++ +D FN YL+E+++N+ S ++V + Sbjct: 294 SGKLNISAKNKEQEEAQEEIEIVYSDETIDTSFNIVYLMEVLNNLDS-----EQVTCSFE 348 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S S++ I D + +VLMPMR Sbjct: 349 SMQSAILITLPDDEQ---------FKHVLMPMR 372 >gi|229167522|ref|ZP_04295260.1| DNA polymerase III, beta subunit [Bacillus cereus AH621] gi|228616084|gb|EEK73171.1| DNA polymerase III, beta subunit [Bacillus cereus AH621] Length = 376 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I + KL Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E+ I + + IVP + E+L++++S + V + LSES I Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMNSNANLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ + E ++I F+ +Y+++ + I +D V Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|319936679|ref|ZP_08011092.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1] gi|319808236|gb|EFW04801.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1] Length = 367 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 94/387 (24%), Positives = 190/387 (49%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ++R +L L R + K+ +PV + D L + S +I I +I + Sbjct: 1 MNFKIKRLALLNALAKVSRAVSMKSPLPVLTGIKFDLKDNELILTGSDSDITIQTSIKEN 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ GS+ +S+ + +I++K+ + + GT I +S F L ++ Sbjct: 61 IEIIQTGSVVLSSRYILEIIKKIDSEFVHIYIVD---GTLTRIEGANSKFDLNGTSYIDY 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + ++ S+ LK +E+T FA + +E R L G+ F +D L +ATD Sbjct: 118 PRIDLNKSGVHLQMKSTDLKQAIEQTSFATSEKETRPVLTGVNF--KAKDHVLECIATDS 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA + I + ++ +II+P+K++ EI RI+ KD + + +S+ ++ +S+ + Sbjct: 176 YRLAKRILTIDSDVS--FNIIIPKKSLIEISRIIE-KDEFIDLYVSDRKVLFIFDSVLIQ 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG +P+ +IP ++ + V+ +L ++DR S++S+ + +KLS+S D + ++ Sbjct: 233 TRLIDGSYPDTSRLIPHEHNYSMSVDSVSLLNSIDRASLLSNEQTNIIKLSMSEDHVMLS 292 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + ++G E+++ +Y + I F+ KYL + I +I+ ++V Sbjct: 293 SYSQEIGSVEENLSKAFYKGDELSISFSAKYLNDAIKSING-----EKVKVLFTGEMKPF 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I +KD + +++P+R Sbjct: 348 IIMDFEKD---------DIIQLVLPVR 365 >gi|319788989|ref|YP_004150622.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1] gi|317113491|gb|ADU95981.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1] Length = 364 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 184/393 (46%), Gaps = 37/393 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V ++ I + + A +++ +P+ +VLL+A D LL + A+ EI I+ + S Sbjct: 1 MKIKVNKALIRDAVKVAASAADKRGNVPILSNVLLEAEDNLLRLVATNLEIGISTVVDCS 60 Query: 61 VDVCGSITVS----AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 V+ CG TV+ A L I G ++S + +++ + +S F L + P Sbjct: 61 VEECGKTTVNAGKAAKLFSSIT-----GEEVSLSAGD---SKLVVETANSRFSLATLPPE 112 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP E + L S + + + +A + +E RY L G+ F + L AVAT Sbjct: 113 EFPEV-ELPQTFPVTLPSQEIDRAIRKVAYAASKDEARYILTGVLF--RSVNGALHAVAT 169 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ E+ AQ I+P+K++ E+ ++L + V + + ++++ N Sbjct: 170 DGHRLALYEISAAAQGVNS---IIPKKSLSELKKLLRESEE-VGIVETGNKLYFNTGDTV 225 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDKL 295 M LI+GE+P+Y VIP N K L + L A+ V+ I ++ +LS KL Sbjct: 226 MWTSLIEGEYPDYTAVIPEGNSKVLTADREELLSALKEVAVIFDKEEVRGAVFTLSDGKL 285 Query: 296 CMTVDNPD---MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +T + +A ++ V Y+ I FN +L+E + + + + ++ Sbjct: 286 TITARKIEGDAAEEAEVTIPVDYSGGEFQIGFNIVHLIESVGSFDG-----ETLKIAMEE 340 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V I ++ N V+MPM++ Sbjct: 341 PVTPVLITSPEEPQLTN---------VIMPMKV 364 >gi|16885215|gb|AAF98349.2| DNA polymerase III beta subunit [Streptococcus pyogenes] Length = 378 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A + +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSADLM-VVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D++ + ++ P+R Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376 >gi|268610502|ref|ZP_06144229.1| DNA polymerase III subunit beta [Ruminococcus flavefaciens FD-1] Length = 367 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 174/387 (44%), Gaps = 24/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++++ E + + R + +K+TIP + ++ + G +E+ E+ I I AS Sbjct: 1 MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTISAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G VSA L + R++ E+ + +NIS + + SEFP Sbjct: 61 TEGEGEFVVSARLFSEFTRRMSGDEVTFDIDESMV---INISCSATECSFPAMSASEFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + SF + S LK+++ T +A + E + L G F I E+ VA DG R Sbjct: 118 LPMVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDI--ENGSFNMVAIDGFR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ + + +VP+KA+ E+ ++ D + ++ I I S+ + Sbjct: 176 LAIRGE--MTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVIS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 RL++G F NY+ IP E+ VN + +++R S++ + + ++ + + + ++ Sbjct: 234 RLLEGAFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKIS 293 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +GK ++++ + + I FN K +LE + D+ V R + + + Sbjct: 294 CRTG-IGKINDAISADISGETVTIGFNNKLILEALRAAEGDK-----VRIRFNGAMKVIE 347 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + +S +++MP+++ Sbjct: 348 ILPLEGES---------FIFLVMPIQL 365 >gi|322386431|ref|ZP_08060060.1| DNA-directed DNA polymerase III beta subunit [Streptococcus cristatus ATCC 51100] gi|321269517|gb|EFX52448.1| DNA-directed DNA polymerase III beta subunit [Streptococcus cristatus ATCC 51100] Length = 378 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISTKNAIPILSTVKIDVTKEGITLIGSNGQISIENFISVQN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A+ +++ L D + FKE E ++ ++ G S L+ Sbjct: 63 ENAGLLVTSPGSILLEANFFINVISSLPD--IVLDFKEIEQK-QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + VLKN++ T FA +T+E R L G+ F + + L V Sbjct: 120 ADQYPRIQEVSTSNPLVLETKVLKNIINETAFAASTQESRPILTGVHFVLTDNQ-SLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + + +++P +++ E + + + +V+V + +++ E+ Sbjct: 179 ATDSHRMSQKKITLDKK-GDDFDVVIPSRSLREFTAVFTDEIETVEVFFANNQLLFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + N NLR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSSVVTFNTNNLRHAMERSRLLSNATQNGTVKLEIVKG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++G+ E ++ + + I FN YL+E + + S++ V S Sbjct: 298 IVSAHVHSPEVGRVNEEIDTESVSGEDLTISFNPTYLIEALKAVDSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + N ++ P+R Sbjct: 353 AVRPFTLVPSED--------AENFIQLITPVR 376 >gi|304439077|ref|ZP_07398996.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] gi|304372436|gb|EFM26023.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus duerdenii ATCC BAA-1640] Length = 358 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 31/386 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ + + A R + + T+ + +LL A D L + + ++ I + Sbjct: 1 MKFRASKQELSKHIQIAQRAVSSRTTMQILEGLLLIAKDNTLTLIGTDTDLTIISTMACI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + V++ L DI+RKL+D K+ +NI +S+F + EFP Sbjct: 61 VEEEGEVVVNSRLFGDIIRKLEDSFVDITLKD----LNLNIVCKNSDFNINCQSSKEFPR 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF + LK + +T FA++ EE R G+F E+ + VA DG R Sbjct: 117 NLNFEDKGSFTMKEEDLKEAIRKTTFAVSIEETRKIFTGVFMDCKED---ISFVALDGFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A + I + ++ I+P + E+ +IL S D VK+++ E +I + + Sbjct: 174 MARERIAISTEPSES---IIPANHLNELQKILGSGD--VKITIGERKILFETNNTKIYST 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299 L GE+ NY+++I S+ E+++N + +++R S+++ R +KL+++ +++ ++ Sbjct: 229 LYSGEYFNYKDLIRKSHTTEVKINREMFQTSIERASLLAKEERSNLIKLNIADNRVKISS 288 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N ++G E + N +DI FN KYLL+ I + +DE+V S + + I Sbjct: 289 -NTEIGNVEEVLECEINGPGLDIAFNSKYLLDGIKIMD-----EDEIVLNFTDSINPLII 342 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 N+ + Y+++P+R+ Sbjct: 343 ------------NEKSYTYLVLPVRL 356 >gi|223983628|ref|ZP_03633806.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM 12042] gi|223964395|gb|EEF68729.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM 12042] Length = 373 Score = 269 bits (688), Expect = 5e-70, Method: Composition-based stats. Identities = 97/392 (24%), Positives = 182/392 (46%), Gaps = 30/392 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + L R I + +P + ++ N + + S +I I + S Sbjct: 1 MNFKISKRVFYSALNTVSRAISSNSPLPALSGIKIEVNQDSIVLTGSDSDISIQTTLKGS 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 V GSI + A + +IVRK+ D +I + G+ IS + F + Sbjct: 61 DEEINLIVKETGSIVIEAKYILEIVRKI-DADEIELEIVD--GSLTKISGMSAEFRINGM 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P+ FE+ + VL ++ +T FA + E R L G+ + + +L Sbjct: 118 RALDYPAIDFTRPGQQFEMDADVLLKVISQTTFATSDRETRPVLTGVNMKCSGK--RLEC 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD +RLA VD+ ++ +I +P K++ E+ + ++ +DSSV +++S+ + I Sbjct: 176 VATDSYRLARKIVDLTSE--NNFNITIPAKSLNEVSKTIA-QDSSVLIAVSDKKAQFWIG 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + RLIDG +P +IP EL V+ ++ A+DR S + + I VKLS +S+ Sbjct: 233 ETVIQTRLIDGAYPETARLIPTEFAHELTVDSRDMLNAIDRASFIKNEGISIVKLSANSE 292 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ ++ + ++G ++E++N+ Y P++I F+ KY+ E I +S+ + Sbjct: 293 EVVISSKSQEVGSSVENLNILTYEGNPLEISFSGKYVFEAIRVLSATT-----IKILFSG 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR D DS +++P+R Sbjct: 348 EMKPFVIRNTDDDSI---------LQLVLPVR 370 >gi|195977158|ref|YP_002122402.1| DNA polymerase III subunit beta [Streptococcus equi subsp. zooepidemicus MGCS10565] gi|195973863|gb|ACG61389.1| DNA polymerase III beta subunit [Streptococcus equi subsp. zooepidemicus MGCS10565] Length = 378 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 3 QFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 S++P +E L + +LK+++ T FA + +E R L G+ +++ AV Sbjct: 120 VSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKD-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S++ + Sbjct: 179 ATDSHRMSQRLITLEKTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E N +LR A++R ++S+ + VKL + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIEAN 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ V++P++GK E ++V + I FN YL+E + I S + V S Sbjct: 298 RISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + + ++ P+R Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376 >gi|289177771|gb|ADC85017.1| DNA polymerase III, beta chain [Bifidobacterium animalis subsp. lactis BB-12] Length = 395 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 92/389 (23%), Positives = 167/389 (42%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + +I+ + P+ V L+A DG +++ A EI I A Sbjct: 22 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 81 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L E T + I+ G + F LQ PESE+P Sbjct: 82 VDESGTVVVLGKLLADISKVLPAEKTYLSANE----TTMTITSGPATFTLQLMPESEYPD 137 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A+A +E R L G+ E++ L +TD R Sbjct: 138 LPQLPPQIGQV-DAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 194 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESR---IHLNIESL 235 L A A + + + R + +++I S D +V + L + I + Sbjct: 195 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 252 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +V+LIDGEFP + S + + +L A RVS+++ R +++ + +L Sbjct: 253 ISTVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVA-ERNAPIRMVFTDQQL 311 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T D A E++ + + + + FN YL E + IS + + ++ ++ Sbjct: 312 TLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAVK 366 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+ + + + ++ Y+L+PMR Sbjct: 367 PVEFNGQQDE---DGEESMSYRYLLVPMR 392 >gi|227498787|ref|ZP_03928927.1| DNA polymerase III [Acidaminococcus sp. D21] gi|226904239|gb|EEH90157.1| DNA polymerase III [Acidaminococcus sp. D21] Length = 372 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 173/388 (44%), Gaps = 21/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + E + + + + + I P+ + + N LE+ A + + + Sbjct: 1 MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSMKKVLEVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I V A L D++ K I + E E+ ++ +++ ++PS Sbjct: 61 GNEDGVILVPAQSLGDLLAKF--STDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPS 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E L +L L+ +T +A +T+E R G+F ++ + V T+ HR Sbjct: 119 FPEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVFME--KKGQHITCVGTNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 LA+ D S+++P + + EI L+ + V + +S+I + + SLS+ Sbjct: 177 LAIKSADPETADDSEYSLLIPARVLKEIANNLTGELPEDVAIIQKDSKILVRMGSLSLVS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G FP+Y IP S +N +L +A+ RVS+ + ++L++ +D++ ++ Sbjct: 237 SLIEGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSS 296 Query: 300 DNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D G+ +E M P++I FN KYL++ NIS D+VV +SS S Sbjct: 297 AASDRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISC-----DQVVLETNSSLSPA 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D S Y++ P+R+ Sbjct: 352 RMMPVDDPS---------YTYIITPVRV 370 >gi|21234115|ref|NP_639692.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)] gi|13620601|emb|CAC36640.1| putative DNA-polymerase III, beta chain [Streptomyces coelicolor A3(2)] Length = 372 Score = 269 bits (688), Expect = 6e-70, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T++ + + +A R + + +P+ +LL A+ L I A EI A+ Sbjct: 1 MKLTIDHTAFAAAVSYAVRSLPARPPVPILAGLLLDASSSGLRISAFDYEISADTTAAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G VS LL DIV ++ + G + + G + F L + P E+P+ Sbjct: 61 VTETGRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTLPLDEYPA 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L V + A++ EE L GI H + E L ATD +R Sbjct: 116 LPE-PGTITGTLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTLYATDRYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLNIESLSM 237 AV + S ++P +A+ + + + D++V ++L L + + Sbjct: 175 FAVRTLSWKDANLPDTSAVIPGRALSDAAKATAD-DTTVDLALPTGDAGLFTLRSDLTTT 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-LC 296 ++R ++GE P Y + P V L+ A RV+++S+ + +KL+ ++D L Sbjct: 234 AIRALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTADSTLV 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D +A++S++ + I FN +LL+ ++ + + + V F S Sbjct: 294 LEGGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNAL-----MAESVQFDFISPTKP 348 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R D D + + Y+LMP+R+ Sbjct: 349 AVLRAHDGDDQALR-------YLLMPIRL 370 >gi|228933970|ref|ZP_04096813.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] gi|228825666|gb|EEM71456.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar andalousiensis BGSC 4AW1] Length = 380 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 5 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 65 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 120 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R+ L G+ + + KL Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIEL--DHNKLI 178 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 179 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296 Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E ++V + ++I F+ +++L+ + I ++ V Sbjct: 297 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 352 SFSGSMRPILIEAGTQSA---------AIHLISPVR 378 >gi|11320907|gb|AAG33949.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 203/382 (53%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ S ++ L R + + + P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFKIKNSIFIKNLQKINRFVVKNISFPILENILISITNGILSLTATNLEIELIANIKLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS TVS+ L DI R + + I +++I S++ L + P FP Sbjct: 61 KHYIAGSTTVSSRKLLDICRHSLNSSDIQIEL---CENKMHIISDKSHYILTTLPSDNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I + L VATDG+ Sbjct: 118 NHNNFHHISEFYIDSNILKTMIEKTHFSMGKQDVRYYLNGMLLEIT--NHALYMVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + QI + SII+ RK + E+ ++L+ +++ + + I + IE L+ + Sbjct: 176 RLGITKTXLKKQIIEFFSIIIARKGIIELYKLLNVSKQLIRILIGTNNIRIYIEQLTFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +L++G+FPNY ++ + + +N L+Q++ R +I++ + V++ + ++ + Sbjct: 236 QLLEGKFPNYDSLFVTKKNNSIILNNILLKQSLLRAAILTHEKFCGVEIYIKKNQFEVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A ++ N+ Y + I N Y+L+I++ ISS + V+ L++SN+S+ I Sbjct: 296 DNQEEETAKDTFNINYIGPSIKISINVYYILDILNAISS-----ENVILFLNNSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + YV+M Sbjct: 351 EAE---------NDTSTIYVVM 363 >gi|217960140|ref|YP_002338700.1| DNA polymerase III subunit beta [Bacillus cereus AH187] gi|222096204|ref|YP_002530261.1| DNA polymerase iii subunit beta [Bacillus cereus Q1] gi|229139332|ref|ZP_04267903.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] gi|217067373|gb|ACJ81623.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|221240262|gb|ACM12972.1| dna polymerase iii, beta subunit [Bacillus cereus Q1] gi|228643879|gb|EEL00140.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] Length = 376 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 174/396 (43%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ E +I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + A +++ P+R Sbjct: 348 SFSGSMRPILIEA---------GTQCAAIHLISPVR 374 >gi|206973618|ref|ZP_03234536.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|206747774|gb|EDZ59163.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] Length = 376 Score = 269 bits (687), Expect = 7e-70, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 175/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++SK V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSKLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q +DR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGIDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ E +I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + A +++ P+R Sbjct: 348 SFSGSMRPILIEA---------GTQCAAIHLISPVR 374 >gi|116626974|ref|YP_819593.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMD-9] gi|116100251|gb|ABJ65397.1| DNA polymerase III, beta subunit [Streptococcus thermophilus LMD-9] gi|312277420|gb|ADQ62077.1| DNA polymerase III, beta subunit [Streptococcus thermophilus ND03] Length = 378 Score = 269 bits (687), Expect = 8e-70, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISASE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ ++V L D ++ E +V + S L+ Sbjct: 63 ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSAKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + +LK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 AEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + A +++P +++ E+ + S ++++ S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ + LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 NVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKS-----ESVRIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|330995700|ref|ZP_08319598.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT 11841] gi|329574759|gb|EGG56320.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT 11841] Length = 374 Score = 268 bits (686), Expect = 8e-70, Method: Composition-based stats. Identities = 91/372 (24%), Positives = 174/372 (46%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK V S + L R+I KNT+P+ L + D +L I AS E + ++ Sbjct: 1 MKFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITSLELV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D ++A + D ++++ + + + N +G F + E+P Sbjct: 61 ESDANTRFCINAKTIQDSMKEIAEQPLSFDINPDNMEITANYQNG--RFNIVGQSADEYP 118 Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 +E + + + + N + R FA A +E+R +NG++F I ++L V+TDG Sbjct: 119 EMNLPQEDMKGLVIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VSTDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + + I+P+K + +L + V + +E ++ +ES + Sbjct: 177 HKL-VRNRNYTIKGDQPAAFILPKKPATILKNLLPKESDDVTLRFNERNAYITMESSRII 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + V+ L A+ RV I S+ +KL L S++L ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQLVVS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E + Y + PM+I F +L++I++N+ + V+ L + + Sbjct: 296 GQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGG-----ENVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPAEQEENED 362 >gi|300727972|ref|ZP_07061350.1| DNA polymerase III, beta subunit [Prevotella bryantii B14] gi|299774814|gb|EFI71428.1| DNA polymerase III, beta subunit [Prevotella bryantii B14] Length = 374 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV + + L ++I KN++ + L D L I AS E + I Sbjct: 1 MKFTVSSTALSSRLNTLSKVINSKNSLAILDSFLFHITDNQLTITASDRENVMQTTIAIE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G + H++ D VR+L + ++ +G NF Q EFP Sbjct: 61 NVEGTGDFCIPNHVILDAVRELPEQPLNFDIDLESFAIKILYQNGLYNFTAQ--NAEEFP 118 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E + +S+L + + R+ FA A +E+R +NGI+F + + L + VA+DG Sbjct: 119 PVQHIEDGATEITAEASILVDNINRSLFATANDELRPVMNGIYFDLTPDSLSI--VASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + S ++P+K + +LS D V + ++ + +++ Sbjct: 177 HKL-VRNQNFTIKNDIPASFVLPKKPATLLKNVLSKDDGDVTIKFNDRNAEIIFTDGTLN 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ L KL ++ Sbjct: 236 CRLIEGRYPNYNSVIPKDNPNHVTIDRKSLLSAIRRVLPFASESSQLVRFHLEMGKLEVS 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E + Y PM I F LLEI++NI S +EVV +L + + Sbjct: 296 SQDLDFATAAKEHLTCEYTNKPMSIGFKGSSLLEILNNIDS-----EEVVLQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 IIVPA------TQPENEDVLMLIMPM 370 >gi|330861745|emb|CBX71919.1| DNA polymerase III subunit beta [Yersinia enterocolitica W22703] Length = 253 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 86/258 (33%), Positives = 144/258 (55%), Gaps = 7/258 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ + G + + G S F L + P ++FP Sbjct: 61 HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + F L + LK L+E T F+MA +++RYYLNG+ F E+L+ VATDGH Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + I Q S+IVPRK V E++R+L D+ +++ + + I ++ + Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234 Query: 240 RLIDGEFPNYQNVIPCSN 257 +L+DG FP+Y+ V+P + Sbjct: 235 KLVDGRFPDYRRVLPKKS 252 >gi|159898038|ref|YP_001544285.1| DNA polymerase III subunit beta [Herpetosiphon aurantiacus ATCC 23779] gi|159891077|gb|ABX04157.1| DNA polymerase III, beta subunit [Herpetosiphon aurantiacus ATCC 23779] Length = 381 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 179/398 (44%), Gaps = 31/398 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + ++ L A + ++++PV ++LL G L++ + EI IT + A Sbjct: 1 MRLACLQENLKRGLALAGHAVAGRSSLPVLANILLATESGRLKLAGNNLEIGITALVGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+IT+ A LL D+V L + + + + ++ + ++ EFP+ Sbjct: 61 VDEDGAITIPAKLLSDLVGNLPNDTV--ELEVDPRTQTLTVTCRGTKANIKGIDADEFPA 118 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKLCAVATD 177 L +L+ +V + A A E L G+ ++ A D Sbjct: 119 MAVPGNEPVLAYLPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATF--AAID 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESL 235 G+RLAV +++ A +++P +A+ E+ R L ++ + +S++ + ++ + +++ Sbjct: 177 GYRLAVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTV 236 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKEL--RVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 R+IDG+FP+Y+ +P +++ ++ +AV R+++ S V L++ Sbjct: 237 DFVSRVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERG 296 Query: 291 ---SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + + ++G+++E+++ + + N +YL E + I + D+V Sbjct: 297 DGSEPGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDT-----DQVA 351 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + NS R D +++MPMRI Sbjct: 352 LETQTPNSPGVFRPIGGDE---------YLHLVMPMRI 380 >gi|22536187|ref|NP_687038.1| DNA polymerase III subunit beta [Streptococcus agalactiae 2603V/R] gi|25010077|ref|NP_734472.1| DNA polymerase III subunit beta [Streptococcus agalactiae NEM316] gi|76787013|ref|YP_328729.1| DNA polymerase III subunit beta [Streptococcus agalactiae A909] gi|76797975|ref|ZP_00780234.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21] gi|77405619|ref|ZP_00782708.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B] gi|77407693|ref|ZP_00784448.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1] gi|77411784|ref|ZP_00788120.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111] gi|77413651|ref|ZP_00789836.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515] gi|22533004|gb|AAM98910.1|AE014191_2 DNA polymerase III, beta subunit [Streptococcus agalactiae 2603V/R] gi|23094428|emb|CAD45647.1| beta subunit of DNA polymerase III [Streptococcus agalactiae NEM316] gi|76562070|gb|ABA44654.1| DNA polymerase III, beta subunit [Streptococcus agalactiae A909] gi|76586655|gb|EAO63154.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21] gi|77160306|gb|EAO71432.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515] gi|77162175|gb|EAO73150.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111] gi|77173692|gb|EAO76806.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1] gi|77175763|gb|EAO78543.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B] Length = 378 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L L R I KN IP+ V ++ + + S +I I IPAS Sbjct: 3 HFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDAIILTGSNGQISIENTIPASN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A +I+ L D E ++ ++ G S L+ Sbjct: 63 ENAGLLVTNPGSILLEAGFFINIISSLPDVTLEFTEIEQH---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ I++ AV Sbjct: 120 VDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNK-YFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A ++VP K++ E + + +V+V S+S++ E+ Sbjct: 179 ATDSHRMSQRTFQLE-KSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N LR A++R ++S+ + V+L + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQNE 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ V ++I FN YL+E + + S + V R S Sbjct: 298 TVSAHVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKS-----ETVTIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + ++ P+R Sbjct: 353 PVRPFTLTPGED--------TEDFIQLITPVR 376 >gi|30262664|ref|NP_845041.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames] gi|47527976|ref|YP_019325.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames Ancestor'] gi|49185507|ref|YP_028759.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne] gi|165869103|ref|ZP_02213763.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] gi|167632459|ref|ZP_02390786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|167637875|ref|ZP_02396154.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|170685339|ref|ZP_02876563.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|170704813|ref|ZP_02895279.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|177649679|ref|ZP_02932681.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190565349|ref|ZP_03018269.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227814502|ref|YP_002814511.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229604660|ref|YP_002866976.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] gi|254685252|ref|ZP_05149112.1| DNA polymerase III subunit beta [Bacillus anthracis str. CNEVA-9066] gi|254722660|ref|ZP_05184448.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055] gi|254737705|ref|ZP_05195408.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western North America USA6153] gi|254743118|ref|ZP_05200803.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B] gi|254752020|ref|ZP_05204057.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum] gi|254760541|ref|ZP_05212565.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia 94] gi|30257296|gb|AAP26527.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames] gi|47503124|gb|AAT31800.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames Ancestor'] gi|49179434|gb|AAT54810.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne] gi|164715829|gb|EDR21346.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488] gi|167514424|gb|EDR89791.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193] gi|167532757|gb|EDR95393.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442] gi|170130614|gb|EDS99475.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389] gi|170670699|gb|EDT21438.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465] gi|172084753|gb|EDT69811.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174] gi|190563376|gb|EDV17341.1| DNA polymerase III, beta subunit [Bacillus anthracis Tsiankovskii-I] gi|227007484|gb|ACP17227.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684] gi|229269068|gb|ACQ50705.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248] Length = 376 Score = 268 bits (686), Expect = 9e-70, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R+ L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E ++V + ++I F+ +++L+ + I ++ V Sbjct: 293 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374 >gi|254468927|ref|ZP_05082333.1| DNA polymerase III, beta subunit [beta proteobacterium KB13] gi|207087737|gb|EDZ65020.1| DNA polymerase III, beta subunit [beta proteobacterium KB13] Length = 316 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 102/336 (30%), Positives = 180/336 (53%), Gaps = 21/336 (6%) Query: 51 IEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 ++ + I ++ IT+SA L+DI R L + +++ F + VN+ G S F L Sbjct: 1 MQTSLNIDTKIETDFEITISARKLFDITRALPENSELDFQINE---SRVNVKAGKSKFNL 57 Query: 111 QSFPESEFPSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 Q+ P ++P K+ + S +L+ + LK L+++ FAMA ++IRYYLNG+ F I + Sbjct: 58 QTLPSKDYPLLKKNDSESVSVKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQ-- 115 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 KL V TDGHRL+ + K +I+PRK + E++++L D V++ + ++ Sbjct: 116 KLNIVGTDGHRLSFTSTKLDDSYEKKE-VIIPRKTIMELIKLLDDSDEIVELEILNQQVT 174 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + + ++IDG+FP+Y VIP + ++ L A+ R SI+S+ + + ++L Sbjct: 175 FKFGDIFIITKVIDGKFPDYNRVIPVGYENGFLIDRQMLLNAMQRASILSNEKYRGIRLV 234 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 LS + + + N + +A E + + YN+ +DI FN YL+++++NI D++ F Sbjct: 235 LSENNMQLITTNSEQEEAQEDIEILYNKEAIDIGFNVTYLIDVLNNIQ-----FDQLSFT 289 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS + + D + YV+MPMRI Sbjct: 290 FKDSNSSCLVTIPNND---------DYKYVVMPMRI 316 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 25/176 (14%), Positives = 61/176 (34%), Gaps = 6/176 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP-EIEITGAIPASV 61 + + ++ + ELL + +++ +L + L I + + T Sbjct: 78 VKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQKLNIVGTDGHRLSFTSTKLDDS 137 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + + + ++++ L D +I + L +V GD F + + +FP Sbjct: 138 YEKKEVIIPRKTIMELIKLLDDSDEIVELEI--LNQQVTFKFGDI-FIITKVIDGKFPDY 194 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 V + L+ A +Y GI ++E +++L ++ Sbjct: 195 NRVIPVGYENGFLIDRQMLLNAMQRASILSNEKY--RGIRLVLSENNMQLITTNSE 248 >gi|325678528|ref|ZP_08158139.1| DNA polymerase III, beta subunit [Ruminococcus albus 8] gi|324109747|gb|EGC03952.1| DNA polymerase III, beta subunit [Ruminococcus albus 8] Length = 370 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 180/387 (46%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + + + + + + ++T+P + D LLE+ E+ I AIP Sbjct: 1 MRFICSKTSLYDAIVNVSKAVSERSTLPSLEGIRFSLADSLLELTGYNLEMGIRTAIPVR 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D GS ++A L ++++K+ D ++ ++ S + F + + +++P Sbjct: 61 SDDKGSCIMNARLFAEMIKKM-DTEELLIDVSESYQVTISGSATKTTFNMFAATAADYPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E++ +A VLKN++ +T FA+A + + L G F I E+ L VA DG+R Sbjct: 120 LPEKDSETQIPIAQPVLKNMIAQTKFAVAMTDDKPILKGELFDI--ENNTLTMVAIDGYR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 +AV + + +VP K++ EI +LS +D +V + S I +I + Sbjct: 178 MAVRYEPVK--FNEPIKFVVPSKSLSEIQSLLSDNEDDTVYIHPSRKHIIFDIGGYVVYS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMT 298 RL++G+F Y++ IP S++ ++ V+ L ++R ++ + R V+ +D + + Sbjct: 236 RLLEGDFHPYKSAIPNSSNTDVVVDRKALISTLERAMLLINDRSPSPVRCYFDNDHVKLN 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +GK + + ++I F KYLLE + I D++V + S ++ Sbjct: 296 CVAA-LGKISDEIAADVTGPVIEIGFKCKYLLEPLKVID-----DEKVKLMMGGSLLAMK 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + Y+++P+R+ Sbjct: 350 IVPCEGE---------KYTYLVLPVRL 367 >gi|189218019|ref|YP_001938661.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum V4] gi|189184877|gb|ACD82062.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum V4] Length = 371 Score = 268 bits (686), Expect = 1e-69, Method: Composition-based stats. Identities = 100/389 (25%), Positives = 186/389 (47%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK +VE+ ++ L II ++T+P+ HVLL A L A+ + + + A Sbjct: 1 MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELTA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V+ G+ T+ A L IVR+L D Q+S+ + +S S F L P+ ++P Sbjct: 61 NVEEEGTTTLPARRLLTIVREL-DSDQLSWKT--NSNHQTTLSSDRSFFQLNGLPDDDYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E ++ ++ ++ +AMA +E R LNG +F I + TDG Sbjct: 118 KFFPERREEGLSISQGKIRKMLRMVEYAMA-DESRPALNGAWFSIK--SGRFEVAVTDGK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA ++ + + IVP KAV EI RI+ D ++K+ L ++I L ++++ Sbjct: 175 RLAYTFEEVENESFEAEG-IVPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNILFFS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ--AVKLSL-SSDKLC 296 +L +G++PN++ VIP + ++ ++ + A+ RVS ++ V L +++L Sbjct: 234 KLTEGKYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGTNELV 293 Query: 297 MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ P++G+A E++++ + I FN YL+E + + ++V+ + V + Sbjct: 294 LSCQAPEIGQARETISLKAFQGEAFSIPFNPLYLIEPLREMEKEDVILEFVNPSTKGN-- 351 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I N YVLMP++ Sbjct: 352 PCLIT-----------EGTNFVYVLMPIK 369 >gi|229060366|ref|ZP_04197732.1| DNA polymerase III, beta subunit [Bacillus cereus AH603] gi|228718956|gb|EEL70573.1| DNA polymerase III, beta subunit [Bacillus cereus AH603] Length = 376 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I + KL Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E+ I + + IVP + E+L++++S + V + LSES I Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ + E ++I F+ +Y+++ + I +D V Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNIAFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|47570668|ref|ZP_00241271.1| DNA polymerase III, beta subunit [Bacillus cereus G9241] gi|47552665|gb|EAL11113.1| DNA polymerase III, beta subunit [Bacillus cereus G9241] Length = 376 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 175/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNV--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN ++IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ E +I F+ +++L+ + I ++ V Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + A +++ P+R Sbjct: 348 SFSGSMRPILVEAGTHSA---------AIHLISPVR 374 >gi|225867619|ref|YP_002743567.1| DNA polymerase III, beta chain [Streptococcus equi subsp. zooepidemicus] gi|225700895|emb|CAW97554.1| DNA polymerase III, beta chain [Streptococcus equi subsp. zooepidemicus] Length = 378 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IP+ + ++ N + + S +I I IP S Sbjct: 3 QFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G++ + A +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 S++P +E L + +LK+++ T FA + +E R L G+ +++ AV Sbjct: 120 ISQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKD-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S++ + Sbjct: 179 ATDSHRMSQRLITLDKTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRSDY 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E N +LR A++R ++S+ + VKL + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLMKDFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIEAN 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ V++P++GK E ++V + I FN YL+E + I S + V S Sbjct: 298 RISAHVNSPEVGKVNEDLDVVSQAGSDLTISFNPTYLIEALKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + + ++ P+R Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376 >gi|55821995|ref|YP_140436.1| DNA polymerase III subunit beta [Streptococcus thermophilus CNRZ1066] gi|55737980|gb|AAV61621.1| beta subunit of DNA polymerase III [Streptococcus thermophilus CNRZ1066] Length = 378 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISASE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ ++V L D ++ E +V + S L+ Sbjct: 63 ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSAKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + +LK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 AEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + A +++P +++ E+ + S ++++ S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ + LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 NVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKS-----ESVRVRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|317503310|ref|ZP_07961360.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae DSM 15606] gi|315665569|gb|EFV05186.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae DSM 15606] Length = 373 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 109/386 (28%), Positives = 180/386 (46%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ S + L ++I KN++P+ L + ++ L+I AS E +T +P Sbjct: 1 MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDNENVMTSLVPLS 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS V + D V++L + L ++ +G NF Q E+P Sbjct: 61 ECDGEGSFAVPNRTILDAVKELPEQPLQFEVDIEALTIKILYQNGMYNFTAQ--NADEYP 118 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + + +AS+ L N + R+ FA AT+E+R +NGI+F + + L VATDG Sbjct: 119 HTQAVPDGAHVITMASNSLINNITRSLFATATDELRPVMNGIYFDLTPD--YLAIVATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V D + S I+P+K + +LS DS V + + + + Sbjct: 177 HKL-VRNQDYTVKSDTPASFILPKKPATLLKNVLSKDDSDVVIKFDDRTTEIRFAEGQLC 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ + S KL ++ Sbjct: 236 CRLIEGNYPNYNSVIP-ENPHNMSIDRKSLIGALRRVLPFASESSQLVRFRIESGKLEVS 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E + YN M I F L EI++N+ DEV F+L + + Sbjct: 295 SEDIDFATSAKEQIVCDYNGPQMSIGFKGSSLQEILNNLDC-----DEVNFQLADPSRAG 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I ++ VN ++MPM Sbjct: 350 VIVPTEQP------ENVNVLMLIMPM 369 >gi|157151517|ref|YP_001449324.1| DNA polymerase III subunit beta [Streptococcus gordonii str. Challis substr. CH1] gi|157076311|gb|ABV10994.1| DNA polymerase III, beta subunit [Streptococcus gordonii str. Challis substr. CH1] Length = 378 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ + + + + + S +I I I + Sbjct: 3 NFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISVNN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 ENAGLLVTSLGSILLEATFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P ++ L + +LK+L+ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLT-DHKNLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + S + +V+V + +I E+ Sbjct: 179 ATDSHRLSQKKIILEKN-GDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + LR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEIEGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + + I FN YL+E + ++S++ V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDAENVSGENLTISFNPTYLIEALKAVNSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D++ + ++ P+R Sbjct: 353 AVRPFTLVPSDQEE--------DFIQLITPVR 376 >gi|319746184|gb|EFV98454.1| DNA-directed DNA polymerase III beta subunit [Streptococcus agalactiae ATCC 13813] Length = 378 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 90/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L L R I KN IP+ V ++ + + S +I I IPAS Sbjct: 3 HFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDTIILTGSNGQISIENTIPASN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A +I+ L D E ++ ++ G S L+ Sbjct: 63 ENAGLLVTNPGSILLEAGFFINIISSLPDVTLEFTEIEQH---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ I++ AV Sbjct: 120 VDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNK-YFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A ++VP K++ E + + +V+V S+S++ E+ Sbjct: 179 ATDSHRMSQRTFQLE-KSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N LR A++R ++S+ + V+L + ++ Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQNE 297 Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++ V ++I FN YL+E + + S + V R S Sbjct: 298 TVSAYVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKS-----ETVTIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + ++ P+R Sbjct: 353 PVRPFTLTPGED--------TEDFIQLITPVR 376 >gi|163940409|ref|YP_001645293.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4] gi|163862606|gb|ABY43665.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis KBAB4] Length = 376 Score = 268 bits (685), Expect = 1e-69, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI V A +I++K+ I E + I + L Sbjct: 61 IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 +EFP+ + ++ + L + ++T FA A E R L G+ F I + KL Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E+ I + + IVP + E+L++++S + V + LSES I Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPNSTISELLKLMNSNSNLVYIYLSESHIIFKF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V L + Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ + E ++I F+ +Y+++ + I +D V Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A Y++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374 >gi|308235534|ref|ZP_07666271.1| DNA polymerase III subunit beta [Gardnerella vaginalis ATCC 14018] gi|311114015|ref|YP_003985236.1| DNA-directed DNA polymerase III subunit beta [Gardnerella vaginalis ATCC 14019] gi|310945509|gb|ADP38213.1| DNA-directed DNA polymerase III beta subunit [Gardnerella vaginalis ATCC 14019] Length = 372 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 89/386 (23%), Positives = 171/386 (44%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + R+I+ + P+ + L+A DG+L++ A ++ + A Sbjct: 1 MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKLEAKDGILQLSAFNYQLSSRHHVEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D GS+ V L+ DI + L E T + IS G S F LQ PE E+P Sbjct: 61 IDEQGSVLVLGKLMADITKSLPSEKTYLSSNE----TTLTISSGKSTFTLQLMPEGEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A++ EE R L GI H ++ + ATD +R Sbjct: 117 LPQIPEKLGQV-DAPTFVQAVVQASVAVSREEDRPVLTGIHAHFEDDSVTF--TATDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237 LA + + + + + + ++ + + +V V+L++ S + Sbjct: 174 LARSTFKWTPEHFDINTSTLIKGSILRDISRSIDEHQNVIVNLNDKEPSILGFENSGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP+ + +N T L A+ RV++++ + + +S S D+L + Sbjct: 234 TSQLIDGEFPSVDRLFVDEYPIHAIINRTMLINAIKRVALVA-EKDAPIYMSFSGDELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + N +A E +++ + + + FN YL+E + IS + V ++ S+ V Sbjct: 293 SAGNDSESQAKELIDIDMDGQDIIVAFNPNYLIEGLSAIS-----EPFVHAKITSAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 G+ + + D +N Y+++PM Sbjct: 348 EFNGQQE---ADGDESMNYRYLVVPM 370 >gi|6606556|gb|AAF19207.1|AF213932_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 102/385 (26%), Positives = 214/385 (55%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ ++ L R+I + +T+P+ ++L+ N+G++ + + E E+ I S Sbjct: 1 MKFNIKNKIFIQHLKKVNRLISKNSTLPILENILITVNNGIISLTTTNLETELISNIETS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I R + ++I + +++I+ +SN+ L + P FP Sbjct: 61 KTHTPGSITVSGQKLLNICRNSSESSEIKISLNED---KMHIASDNSNYILTTLPSENFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++ F ++S +LK ++E+T F+M +++RYYLNG+ + L AVATDG+ Sbjct: 118 NHNKFHHISEFFISSDILKKMIEQTQFSMGKQDVRYYLNGMLLE--KNKTSLYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + + + S+I+PRK + E+ ++L+ + + V + ++ I ++IE L +V Sbjct: 176 RLGITKTFLKEDV-FIFSVIIPRKGIIELHKLLNIEPQLIHVLIGKNNIRIHIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++++ + + +N L+Q++ RV+++S V++ ++++K + Sbjct: 235 QLIEGEYPDYKSILLRKKNHSIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N D KA +S + Y ++I N Y++E++ I+S + ++ SN+S+ I Sbjct: 295 NNQDEEKAEDSFKINYCGDDIEISINVYYIIEVLSVITSK-----NIFMFINESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +S + YV+M +R Sbjct: 350 ESEEDNS---------SLYVIMLLR 365 >gi|33519499|ref|NP_878331.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus] gi|33517162|emb|CAD83544.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus] Length = 367 Score = 267 bits (684), Expect = 1e-69, Method: Composition-based stats. Identities = 113/386 (29%), Positives = 195/386 (50%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M VER+DI L II+ ++ +P+ H+LL D L I A+ EIEI I Sbjct: 1 MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + S+TV + ++I + L + ++I + IS G SNF L P +FP Sbjct: 61 KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQE---NRFLISSGCSNFVLSILPVLDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 K+ E + VLK +++ T F+M ++ RYYLNGI + + V+TDG+ Sbjct: 118 KVKKYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGICLKTEKN--TISMVSTDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL++ EV + S+I+PRK V EI +L + VK+ + + I++ + + + Sbjct: 176 RLSMCEVT-SKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIRS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LID EFP+Y+ + ++ L+ A+ R SI+S+ +++ V L+S++L +T Sbjct: 235 KLIDSEFPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKITT 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + E + + ++ + I FN YLL++I+ + S + F L ++ SSV I Sbjct: 295 DNFKEETSEEILKILFSYENISISFNVDYLLDVINVVDSQ-----MLKFSLINTVSSVQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 G K + Y++MP+++ Sbjct: 350 EGVPK--------YYGSIYIIMPVKV 367 >gi|289166911|ref|YP_003445178.1| DNA polymerase III, beta subunit [Streptococcus mitis B6] gi|288906476|emb|CBJ21306.1| DNA polymerase III, beta subunit [Streptococcus mitis B6] Length = 378 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ L+ L R I KN IP+ + + + + + S +I I I Sbjct: 3 HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGVTLIGSNGQISIENFISQKN 62 Query: 62 DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G SI + A ++V L D ++ + ++ ++ G S L+ Sbjct: 63 EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK ++ T FA + +E R L G+ F +++ +L V Sbjct: 120 SEQYPRIQEISVSTPLVLETKLLKKIINETAFAASIQESRPILTGVHFVLSQHK-ELKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + + +V++ + ++I E+ Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + + NLRQ+++R ++SS + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVINLRQSMERARLLSSATQNGTVKLEIKGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V +P++GK E ++ + I FN YL++ + ++S ++V S Sbjct: 298 IVSAHVHSPEVGKVNEEIDTDQVIGEDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D D + ++ P+R Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376 >gi|239947309|ref|ZP_04699062.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] gi|239921585|gb|EER21609.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes scapularis] Length = 379 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G +TVS L DIVRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGELTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ C+ +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + +++ LS ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGIFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N + + + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSDISAPVLIKFPENPKD---------IFVVMPVKV 379 >gi|323126261|gb|ADX23558.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp. equisimilis ATCC 12394] Length = 378 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IPV + + + + + S +I I IP S Sbjct: 3 QFSINRTLFIQALNATKRGISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLITSPGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEIAQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + + ++ P+R Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376 >gi|228985790|ref|ZP_04145940.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228773962|gb|EEM22378.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 376 Score = 267 bits (684), Expect = 2e-69, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I + L Sbjct: 61 MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNV--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN ++IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ ++ E +I F+ +++L+ + I ++ V Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + A +++ P+R Sbjct: 348 SFSGSMRPILVEAGTHSV---------AIHLISPVR 374 >gi|196040371|ref|ZP_03107672.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] gi|196028856|gb|EDX67462.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99] Length = 376 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + E ++I F+ ++++E + I ++ + Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSAV---------VHLISPVR 374 >gi|55820105|ref|YP_138547.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMG 18311] gi|55736090|gb|AAV59732.1| beta subunit of DNA polymerase III [Streptococcus thermophilus LMG 18311] Length = 378 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I AS Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISASE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ ++V L D ++ E +V + + L+ Sbjct: 63 ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSAKTEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + +LK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 AEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + A +++P +++ E+ + S ++++ S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ + LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 NVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKS-----ESVRIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|198274685|ref|ZP_03207217.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135] gi|198272132|gb|EDY96401.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135] Length = 405 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 94/364 (25%), Positives = 176/364 (48%), Gaps = 13/364 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK V + + L R+I +N++P+ L + DG L + AS + ++ +I Sbjct: 32 MKFIVSSTALFSHLQAISRVINSRNSLPILDCFLFELRDGTLFMTASDNDTTLSTSIEVN 91 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G VS+ L + ++++ + + + + E+ + + + + L E+P Sbjct: 92 ESDSDGRFAVSSKTLLEALKEIPEQPLSFHIEPSNM--EITVEYLNGKYSLMGQNADEYP 149 Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + +L N V R+ FA A +E+R +NGI+F I+ ED+ L VA+DG Sbjct: 150 QAQALGSNAVQVTMGAEILMNGVNRSLFATADDELRPVMNGIYFDISTEDITL--VASDG 207 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V A+ A+ + I+P+K + +L + V++ + +E+ M Sbjct: 208 HKL-VRCKTYAARGAEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 266 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ A+ RVS+ SS +KLSLS +++ ++ Sbjct: 267 CRLIEGRYPNYNSVIPQNNPHRAIIDRALFISALRRVSVFSSQSSSLIKLSLSENQMKIS 326 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y PM I F +L++I++NIS+ ++ L + + Sbjct: 327 AQDIDFSTSAEETIACQYGGNPMSIGFKSSFLIDILNNISAQ-----NIIIELADPSRAG 381 Query: 358 FIRG 361 I Sbjct: 382 VIVP 385 >gi|326562315|gb|EGE12641.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 103P14B1] gi|326575519|gb|EGE25444.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 101P30B1] Length = 385 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPEETVVIDAPED--TTRCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ ++D + V N ++G+A E + V Y+ +++ FN YL +++ + Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 EV L+ +S I D YV+MPMR Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384 >gi|322373977|ref|ZP_08048511.1| DNA polymerase III, beta subunit [Streptococcus sp. C150] gi|321276943|gb|EFX54014.1| DNA polymerase III, beta subunit [Streptococcus sp. C150] Length = 378 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 88/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + + ++ L+ L R I KN IP+ + ++ + + S +I I +I S Sbjct: 3 QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSEGIYLTGSNGQISIENSISVSE 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A+ ++V L D ++ E +V + G S L+ Sbjct: 63 ENAGLLITQSGTILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + + + + VLK+++ T FA +T+E R L G+ F ++ L AV Sbjct: 120 VEQYPRIQEVDSLTPLMMNTKVLKSIISETSFAASTQESRPILTGVHFVLS-NHNDLKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + A +++P +++ E+ + S +++V S ++I E+ Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDDIDNLEVFFSANQILFRSET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ S + E+ +LR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIVNG 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E ++V + + I FN YL++ + + S + V R S Sbjct: 298 NVSAHVNSPEVGKVNEDIDVQDVSGSDLIISFNPTYLIDALKALKS-----ETVRVRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376 >gi|50839100|gb|AAT81767.1| DNA polymerase III, beta chain [Propionibacterium acnes KPA171202] gi|332674400|gb|AEE71216.1| DNA polymerase III subunit beta [Propionibacterium acnes 266] Length = 503 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 174/401 (43%), Gaps = 35/401 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I +ER + E + A R + + T+P+ +L++A + + AS E + A V Sbjct: 119 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 178 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G VS LL DI R L + + ++++ G + F LQ+ P E+P Sbjct: 179 DEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 234 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + +SV V + A +E+ G+ IN E L L +ATD +R+ Sbjct: 235 PQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 291 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234 A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 292 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 350 Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ ++ Sbjct: 351 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 409 Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344 D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 410 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 463 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 464 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 501 >gi|322412916|gb|EFY03823.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp. dysgalactiae ATCC 27957] Length = 378 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 93/393 (23%), Positives = 178/393 (45%), Gaps = 29/393 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IPV + + + + + S +I I IP S Sbjct: 3 QFSINRTLFIQALNITKRAISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLITSPGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEIAQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S D V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGNDLTISFNPTYLIESLKAIKS-----DTVKIHFLS 352 Query: 353 SNSS-VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I G D++S ++ P+R Sbjct: 353 PVRPFTLIPGDDEES---------FIQLITPVR 376 >gi|11320899|gb|AAG33945.1|AF197885_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 267 bits (683), Expect = 2e-69, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 200/382 (52%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGILSLTATNLEIELIANIQLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 THYISGNTTVSSRKLLDICRHSLNTSNINIELN---ANKIHIISNTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S +LK+++E+THF+M +++RYYLNG+ + L VATDG+ Sbjct: 118 NHNHFHHISEFCIDSHILKDMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + Q + SI++ RK + E+ ++L+ +++ + ++ I + IE L + Sbjct: 176 RLGITHTLLKQQQIESFSIVMTRKGIIELYKLLNISRQLIRILIGKNSIRIYIEQLVFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FPNY ++ + + +NC L+Q++ R +I++ + V++ + ++ + Sbjct: 236 QLIEGKFPNYNSIFLKKKNNAIILNCALLKQSLLRAAILTHEKFCGVEIHIKKNQFTVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A ++ N+ Y + I N Y+L+++++ISS + ++ L++SN+S+ I Sbjct: 296 DNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISS-----ENILLFLNNSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + Y++M Sbjct: 351 EAE---------NDTSTIYIVM 363 >gi|332980607|ref|YP_004462048.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON] gi|332698285|gb|AEE95226.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON] Length = 371 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 185/390 (47%), Gaps = 25/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT E+ D++ L A + + K IP+ +++++ D +K++ EI I + + Sbjct: 1 MIITCEKDDLVNALSIAEKALPSKTIIPMLNNIIIETVDDATHLKSTDTEISIDTVLNGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ ++ L DI R L + E +I G S ++ +FP Sbjct: 61 IIDQGSVALNGRLFIDIARSLPKEQVTIKVDD---HNEASIKCGLSEISIKGMGTVDFPQ 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF ++S++ ++++ +T F++A ++ R L G +++ L V+ DG+ Sbjct: 118 LPVISNGMSFNISSTIFRDMIRQTAFSIAPPDDNREVLTGELLKFENDEIML--VSVDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+++ +I + ++P KA+ E++RIL ++ + + + R I M+ Sbjct: 176 RISIRYEEISEIPDRQFEAVIPGKALMELMRILPPTQENLNIKIDDKRAAFTINGTVMTA 235 Query: 240 RLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 +L++ +F NY++++ + VN +L A +R +++ + +KLS+S + Sbjct: 236 QLLNSKFINYEDILLPELSETKTTITVNRADLLSAAERAMLVAKEGKSSLIKLSISEHGM 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T N D+GK E + + N ++I FN +YL + + + D++V+ + +S S Sbjct: 296 VLTS-NADIGKVHEDIPIDINGSAIEIAFNGRYLTDPLKVVD-----DEQVLMKFNSDVS 349 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D S Y+++P+R+ Sbjct: 350 PCIIEPVDGKS---------FLYLVLPVRM 370 >gi|228939801|ref|ZP_04102379.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|228972690|ref|ZP_04133290.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228979275|ref|ZP_04139613.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407] gi|228780476|gb|EEM28705.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407] gi|228787055|gb|EEM35034.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar thuringiensis str. T01001] gi|228819897|gb|EEM65944.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar berliner ATCC 10792] gi|326940453|gb|AEA16349.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar chinensis CT-43] Length = 376 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|326571821|gb|EGE21827.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC7] Length = 385 Score = 267 bits (682), Expect = 2e-69, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C G T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGGTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSAIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNGITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ ++D + V N ++G+A E + V Y+ +++ FN YL +++ + Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 EV L+ +S I D YV+MPMR Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384 >gi|326560702|gb|EGE11070.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 46P47B1] gi|326561744|gb|EGE12079.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 7169] gi|326569035|gb|EGE19104.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC1] Length = 385 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ ++D + V N ++G+A E + V Y+ +++ FN YL +++ + Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 EV L+ +S I D YV+MPMR Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384 >gi|319778797|ref|YP_004129710.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9] gi|317108821|gb|ADU91567.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9] Length = 380 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 111/396 (28%), Positives = 197/396 (49%), Gaps = 32/396 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI----- 57 + I + L I+E+K ++P+ HVL++ L++ S I+IT + Sbjct: 4 FQLGTEAIRKPLDTVVGIVEKKASLPILSHVLIKKGPQSLDLVTSDLSIQITTKLRFGED 63 Query: 58 -----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 P + V A L +I+R + GA I N +++ +S DS F LQ+ Sbjct: 64 DSSSAPVDDAEIIKVAVPALKLQNIIRVMPTGAMIEA---NLNESKITLSADDSRFTLQT 120 Query: 113 FPESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 P +++P + E+ F + LK ++ AMA +IRYYLNG+ I L Sbjct: 121 LPGADYPDANFDTEWKVRFSIDVQALKKILNLVSCAMAQSDIRYYLNGMLLVIEPG--ML 178 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 VATDGHRL+ A I + +I+PRK V ++LR+L + V+VS+S I Sbjct: 179 HGVATDGHRLSHAAETIEG-VTDQTKVIIPRKTVEQLLRLLDESHNEVQVSVSGRSIQFK 237 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290 + + + ++G+FP+++ VIP + E+ +N + + R +I+ + ++ ++KL Sbjct: 238 FGDIEVLSKQVEGKFPDFEKVIPKGYNTEIIINRSEFSDNLQRANILVNEDKLHSIKLHF 297 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++++L ++ N D ++ +++ YN P+D+ FN YLLE++ ++S + V + Sbjct: 298 ANNRLTISSSNLDQEESKMELDIEYNNNPIDMGFNALYLLEVLSVLNS----YENVTLSM 353 Query: 351 DS-SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SNSS+ I K+ D YV+MP+RI Sbjct: 354 SGESNSSLLISIKEDDQ---------FKYVVMPLRI 380 >gi|49479172|ref|YP_036786.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar konkukian str. 97-27] gi|49330728|gb|AAT61374.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar konkukian str. 97-27] Length = 376 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+ Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSV 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + E ++I F+ ++++E++ I ++ + Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEVLKAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSAV---------VHLISPVR 374 >gi|229150900|ref|ZP_04279111.1| DNA polymerase III, beta subunit [Bacillus cereus m1550] gi|228632460|gb|EEK89078.1| DNA polymerase III, beta subunit [Bacillus cereus m1550] Length = 376 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I +K + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEKSA---------AVHLISPVR 374 >gi|218897702|ref|YP_002446113.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228901233|ref|ZP_04065431.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222] gi|218540909|gb|ACK93303.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|228858404|gb|EEN02866.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222] Length = 376 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AIHLISPVR 374 >gi|196230262|ref|ZP_03129125.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428] gi|196225859|gb|EDY20366.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428] Length = 280 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V + +L L ++ + T+P+ +VLLQA L + + ++ ++GAI A Sbjct: 1 MKFSVSKEKLLAGLQTVQNVVSTRTTLPILSNVLLQAEGDQLRLTTTDLDVGVSGAITAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ T+ A L++IVR+L I E + +I G S F + PE EFP Sbjct: 61 VEKPGATTLPARRLFNIVRELPAAEII---VEVDSKNVASIRCGQSFFKILGLPEEEFPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ +F + VL++ +++T +A++T+E RY LNGI F E K+ VATDG R Sbjct: 118 LPKQTDARTFTIGQQVLRDALKKTSYAISTDETRYVLNGILFSFKEN--KVTLVATDGRR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++++ ++ IIVP KAV E+ R+L + V++S+ E+++ I ++ + Sbjct: 176 LALVDLEVEFPRSQEVDIIVPTKAVTELGRLLGD-EGDVRLSVEENQVAFQIGDTLLASK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 LI+G +PNY+ VIP + + + Q S R + Sbjct: 235 LIEGNYPNYRQVIPGEAKERVTLERELFLQRCASCGAGSPARSRT 279 >gi|326563091|gb|EGE13364.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 12P80B1] gi|326571724|gb|EGE21737.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC8] gi|326574362|gb|EGE24305.1| DNA polymerase III, beta subunit [Moraxella catarrhalis CO72] Length = 385 Score = 267 bits (682), Expect = 3e-69, Method: Composition-based stats. Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R+ +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRNLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ ++D + V N ++G+A E + V Y+ +++ FN YL +++ + Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 EV L+ +S I D YV+MPMR Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384 >gi|183602669|ref|ZP_02964033.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219682501|ref|YP_002468884.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis AD011] gi|241190068|ref|YP_002967462.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|241195474|ref|YP_002969029.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|183218087|gb|EDT88734.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis HN019] gi|219620151|gb|ACL28308.1| DNA polymerase III, beta subunit [Bifidobacterium animalis subsp. lactis AD011] gi|240248460|gb|ACS45400.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis Bl-04] gi|240250028|gb|ACS46967.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis DSM 10140] gi|295793055|gb|ADG32590.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp. lactis V9] Length = 374 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 92/389 (23%), Positives = 167/389 (42%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V + + + +I+ + P+ V L+A DG +++ A EI I A Sbjct: 1 MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G++ V LL DI + L E T + I+ G + F LQ PESE+P Sbjct: 61 VDESGTVVVLGKLLADISKVLPAEKTYLSANE----TTMTITSGPATFTLQLMPESEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + V + A+A +E R L G+ E++ L +TD R Sbjct: 117 LPQLPPQIGQV-DAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESR---IHLNIESL 235 L A A + + + R + +++I S D +V + L + I + Sbjct: 174 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +V+LIDGEFP + S + + +L A RVS+++ R +++ + +L Sbjct: 232 ISTVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVA-ERNAPIRMVFTDQQL 290 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T D A E++ + + + + FN YL E + IS + + ++ ++ Sbjct: 291 TLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAVK 345 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V G+ + + + ++ Y+L+PMR Sbjct: 346 PVEFNGQQDE---DGEESMSYRYLLVPMR 371 >gi|229079875|ref|ZP_04212407.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2] gi|228703459|gb|EEL55913.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2] Length = 376 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQT----IKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELANN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|228965621|ref|ZP_04126702.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228794029|gb|EEM41551.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 376 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EEMITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AIHLISPVR 374 >gi|319940208|ref|ZP_08014561.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV] gi|319810679|gb|EFW07009.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV] Length = 378 Score = 266 bits (681), Expect = 3e-69, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 NFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISIKN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D I+ + ++ ++ G S L+ Sbjct: 63 EDAGLLVTSSGSILLEATFFINVVSSLPD---ITLDFKEIDQKQIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L +SVLKN++ T FA +T+E R L G+ F + E L V Sbjct: 120 ADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + +V++ + +++ E+ Sbjct: 179 ATDSHRMSQKQIILEKN-GDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + NLR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + + I FN YL++ + I+S++ V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESISGQDLTISFNPTYLIDSLKAINSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ D N ++ P+R Sbjct: 353 AVRPFTLKPSDD--------TENFIQLITPVR 376 >gi|229178968|ref|ZP_04306326.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W] gi|228604525|gb|EEK61988.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W] Length = 376 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I I Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|25452934|sp|Q9EVE4|DPO3B_BUCRP RecName: Full=DNA polymerase III subunit beta gi|11320921|gb|AAG33956.1|AF197896_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 210/382 (54%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T++ ++E L R++ + + P+ ++L+Q +G+L + + EIE+ I Sbjct: 1 MKFTIQNDILVENLKKITRLLIKNVSFPILENILIQIENGILSLTTTNLEIELVSKIKII 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G IT+S + +I R L + +++ + + ++ +S +SN+ L + +FP Sbjct: 61 TKYTPGKITISGRKILNICRNLSEKSEVKMPLKEK---KMYVSCENSNYILSTLSADDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++ +F ++S++LK ++E+T F+M +++RYYLNG+ ++D L +VATDG+ Sbjct: 118 NHQNFNHISNFHISSNILKEMIEKTEFSMGKQDVRYYLNGMLLE--KKDNFLRSVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + I SII+P KAV E+ R+L+++ + + + + I + I+ L + Sbjct: 176 RLAISYSKLEKDI-NFFSIIIPSKAVMELSRLLNTQVQLLNILIGTNSIRIYIKDLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++V+ + NCT L++++ R +I++ + +++ + +K + Sbjct: 235 QLIEGEYPDYESVLFKEKKNPIIANCTLLKKSLLRAAILAHEKFCGIEIKIEKNKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + ++ Y ++I N YLL++I+NI S + ++ L+ S SS+ I Sbjct: 295 DNQEEETAEDLFDINYLGDTIEISINVYYLLDVINNIKS-----ENIILFLNKSKSSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 ++ Y++M Sbjct: 350 EAENNSLNA---------YIIM 362 >gi|251781470|ref|YP_002995771.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp. equisimilis GGS_124] gi|242390098|dbj|BAH80557.1| DNA polymerase III, beta chain [Streptococcus dysgalactiae subsp. equisimilis GGS_124] Length = 378 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ ++ L R I KN IPV + + + + + S +I I IP S Sbjct: 3 QFSINRTLFIQALNATKRGISSKNAIPVLSTIKINVSSSDITLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ +I+ L D + E +V ++ G S L+ Sbjct: 63 ENAGLLITSPGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + A +++P K++ E + + +V+V S S+I E Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ ++ + E+ N +LR A++R ++S+ + VKL ++ + Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEIAQN 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++GK E +++ + + I FN YL+E + I S + V S Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + + ++ P+R Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376 >gi|293400057|ref|ZP_06644203.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] gi|291306457|gb|EFE47700.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 5_2_54FAA] Length = 372 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 179/391 (45%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M V + + L A R I + +P V ++A L + S +I I + Sbjct: 1 MYFKVSKKEFYNALSVAARAISTFSPLPAFSGVKIEATMDCLILTGSDSDISIQTKLKKS 60 Query: 59 ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK+ D +I F E G+ IS + F + Sbjct: 61 EHCVLEIHDMGSIVIEAKYILEIVRKI-DADEIEF--EMLDGSLTKISGNTAEFRINGMR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 SE+P+ + F ++ +LK ++ +T FA + +E R L G+ F E +L V Sbjct: 118 ASEYPAIDFSKPNECFNVSEDILKKIILQTSFATSDKETRPVLTGVNFQCKEH--QLHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA V+I + +I +P K++ E+++ L + V++++++ + I Sbjct: 176 ATDSYRLAKKTVEIEESL--NFNITIPAKSLQEVVKTLE-GEGDVEIAVNDKKAQFIIHD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K +LS + Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDAHDLLNAIDRASFIKNDGVSVIKFNLSEQE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + ++G + E + + ++ ++I N +Y+ + I +S V F L Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFSGNALEISCNGRYVFDAIKALSGSL-----VKFSLCGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ D DS +++P+R Sbjct: 348 MKPFIIQSVDDDSV---------LQLVLPVR 369 >gi|262281646|ref|ZP_06059415.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA] gi|262262100|gb|EEY80797.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA] Length = 378 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ + + + + + S +I I I + Sbjct: 3 NFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISINN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 ENAGLLVTSLGSILLEATFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P ++ L + +LK+L+ T FA + +E R L G+ F + + L V Sbjct: 120 ADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLT-DHKNLKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HRL+ ++ + +++P +++ E + S + +V+V + +I E+ Sbjct: 179 ATDSHRLSQKKIILEKN-GDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + LR A++R ++S+ + VKL + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEIEGG 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + + I FN YL+E + ++S ++V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDAENVSGDNLTISFNPTYLIEALKAVNS-----EKVTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D++ + ++ P+R Sbjct: 353 AVRPFTLVPSDQE--------EDFIQLITPVR 376 >gi|15606912|ref|NP_214293.1| DNA polymerase III beta chain [Aquifex aeolicus VF5] gi|3913514|sp|O67725|DPO3B_AQUAE RecName: Full=DNA polymerase III subunit beta gi|2984154|gb|AAC07688.1| DNA polymerase III beta chain [Aquifex aeolicus VF5] Length = 363 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 99/386 (25%), Positives = 194/386 (50%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V+R ++ E+L A E+K +P+ + LL A + L ++A+ E + ++ Sbjct: 1 MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + V + LYDIV+ L + G ++ I+ G S + L + P +FP Sbjct: 61 VEEEGEVCVHSQKLYDIVKNLNSAYVYLHTE----GEKLVITGGKSTYKLPTAPAEDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L+ ++L N +E+ +A+A EE L G++ E+ ++ V +DGHR Sbjct: 117 FPEIVEGGE-TLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYED--RIHFVGSDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239 LA+ +++PRK++ + ++++ +D +++ S ES + + ++V Sbjct: 174 LALY----EPLGEFSKELLIPRKSLKVLKKLITGIEDVNIEKSEDESFAYFSTPEWKLAV 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL++GEFP+Y +VIP E+ + + + R+ +S ++ VK++LS + Sbjct: 230 RLLEGEFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFEF 289 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G+A E + V Y P +I FN KYL+E +D S + V F+ + +++ + Sbjct: 290 ADPEFGEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDS-----ERVWFKFTTPDTATLL 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D + + ++MPMR+ Sbjct: 345 EAEDYEKEP-------YKCIIMPMRV 363 >gi|229097210|ref|ZP_04228172.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29] gi|228686021|gb|EEL39937.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29] Length = 376 Score = 266 bits (681), Expect = 4e-69, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 174/396 (43%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS + I IP S Sbjct: 1 MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEQIATILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQ----IITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P +EFP+ ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLV 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LS+S + Sbjct: 175 CAATDSHRLAIRETPISSDA--KANCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ V Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAI-----TEEMVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|206972508|ref|ZP_03233452.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] gi|206732532|gb|EDZ49710.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134] Length = 376 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTIFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I I Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|160914814|ref|ZP_02077028.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991] gi|158433354|gb|EDP11643.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991] Length = 372 Score = 266 bits (680), Expect = 4e-69, Method: Composition-based stats. Identities = 93/391 (23%), Positives = 177/391 (45%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + + + L A R I + +P + + A + + + S ++ I + Sbjct: 1 MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60 Query: 59 ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK D I F + G+ IS + F + Sbjct: 61 EDCVLEIKEMGSIVIEAKYILEIVRK-TDADIIEFEMID--GSLTKISGNSAEFRINGMK 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E+P+ + SF+LA VLK ++ +T FA + +E R L G+ FH + L V Sbjct: 118 AIEYPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHCEGNE--LHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA V++ ++ ++ +P K++ E+L+ L ++ V++++++ + I Sbjct: 176 ATDSYRLARKTVELEEEL--NFNVTIPSKSLQEVLKTLE-GENEVEIAVNDKKAQFIIGD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K SLS + Sbjct: 233 TIVQTRLIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + ++G + E + + + P++I N +Y+ E I + V F L Sbjct: 293 CVLSSKSIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAIRALGGSL-----VKFSLCGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I + D +++P+R Sbjct: 348 MKPFVITSLEDDKI---------LQLVLPVR 369 >gi|11320903|gb|AAG33947.1|AF197887_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 99/382 (25%), Positives = 201/382 (52%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGVLSLTATNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TVS+ L DI R + + ++ + +++I S + L++ P FP Sbjct: 61 THYISGNTTVSSQKLLDICRHSLNSSNMNIELD---ANKIHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S+++K ++E+THF+M +++RYYLNG+ + L VATDG+ Sbjct: 118 NHNHFHHISEFYIDSNIIKEMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LHMVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGITHTLLKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FPNY +V + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 236 QLIEGKFPNYDSVFLTKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A ++ N+ Y + I N Y+L+I+++ISS + + L++SN+S+ I Sbjct: 296 DNQEEETAEDTFNINYIGPSIKISINVYYMLDILNSISS-----ENIFLFLNNSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + Y++M Sbjct: 351 EAE---------NDTSTIYIVM 363 >gi|281424379|ref|ZP_06255292.1| DNA polymerase III, beta subunit [Prevotella oris F0302] gi|281401648|gb|EFB32479.1| DNA polymerase III, beta subunit [Prevotella oris F0302] Length = 373 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 103/386 (26%), Positives = 178/386 (46%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ S + L ++I KN++P+ L + ++ L+I AS E +T + Sbjct: 1 MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS V + D V++L + L ++ +G NF Q E+P Sbjct: 61 ECDGEGSFAVPNRTILDAVKELPEQPLSFDVDIEALTIKILYQNGMYNFTAQ--NADEYP 118 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + + S+ L + + R+ FA AT+E+R +NGI+F + + L VATDG Sbjct: 119 HTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V D + S I+P+K + +LS D+ V + + + ++ Sbjct: 177 HKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQLT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ + + KL ++ Sbjct: 236 CRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEVS 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E + YN M I F L +I++N+ S DEV+F+L + + Sbjct: 295 SEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDS-----DEVIFQLADPSRAG 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + N ++MPM Sbjct: 350 VIVPAQQP------ENANILMLIMPM 369 >gi|325269039|ref|ZP_08135660.1| DNA-directed DNA polymerase III beta subunit [Prevotella multiformis DSM 16608] gi|324988660|gb|EGC20622.1| DNA-directed DNA polymerase III beta subunit [Prevotella multiformis DSM 16608] Length = 374 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 94/386 (24%), Positives = 176/386 (45%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + + L R+I KN++P+ L + ++ L I AS E + G + Sbjct: 1 MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEIHNRQLTITASDSENVMRGTLNLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G V+ H + D V++L + E+ V +G NF + E+P Sbjct: 61 DCEGEGDFAVNNHTILDAVKELPEQPLALAVNMEEMKIYVTYQNGSYNFPI--MSAEEYP 118 Query: 120 ST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + + ++ L + + R+ FA A +E+R +NG++F + E+ L VA+DG Sbjct: 119 RVQPMSESATTVTIGAAKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDG--LAVVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + S ++P+K + +LS V + + ++ +++ Sbjct: 177 HKL-VRNKIFTVKSETPASFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLA 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G++PNY +VIP N + ++ +L A+ RV +S Q ++ +SS L + Sbjct: 236 CRLIEGKYPNYNSVIPLDNPNLVTIDRKSLIGALRRVLPFASDSSQLIRFYVSSGLLELN 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y PM I F +L+I++N+ S D+VV +L + + Sbjct: 296 AEDIDFATSAKESVTCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 VIVPA------MQPESEDILMLIMPM 370 >gi|299140891|ref|ZP_07034029.1| DNA polymerase III, beta subunit [Prevotella oris C735] gi|298577857|gb|EFI49725.1| DNA polymerase III, beta subunit [Prevotella oris C735] Length = 373 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ S + L ++I KN++P+ L + ++ L+I AS E +T + Sbjct: 1 MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS V + D V++L + L ++ +G NF Q E+P Sbjct: 61 ECDGEGSFAVPNRTILDAVKELPEQPLSFDVDIEALTIKILYQNGMYNFTAQ--NADEYP 118 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T+ + + S+ L + + R+ FA AT+E+R +NGI+F + + L VATDG Sbjct: 119 HTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V D + S I+P+K + +LS D+ V + + + ++ Sbjct: 177 HKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQLT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ +L A+ RV +S Q V+ + + KL ++ Sbjct: 236 CRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEVS 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E + YN M I F L +I++N+ DEV+F+L + + Sbjct: 295 SEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDG-----DEVIFQLADPSRAG 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + N ++MPM Sbjct: 350 VIVPAQQP------ENANILMLIMPM 369 >gi|332876761|ref|ZP_08444519.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] gi|332685320|gb|EGJ58159.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329 str. F0087] Length = 374 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 174/372 (46%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ V S + L R+I KNT+P+ L + D +L I AS E + + Sbjct: 1 MRFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITNLELV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D ++A + D ++++ + + + N +G F + E+P Sbjct: 61 ESDANARFCINAKTIQDSMKEIAEQPLSFDINPDNMEITANYQNG--RFNIVGQSADEYP 118 Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 +E + + + + + N + R FA A +E+R +NG++F I ++L V+TDG Sbjct: 119 EMNLPQEDMNALIIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VSTDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + + I+P+K + +L + V + +E ++ +ES + Sbjct: 177 HKL-VRNRNYGIKDHQPAAFILPKKPATILKNLLPKESDDVTLKFNERNAYITMESSRLI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N + V+ L A+ RV I S+ +KL L S++L ++ Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQLVVS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E + Y + PM+I F +L++I++N+ + V+ L + + Sbjct: 296 GQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGG-----ENVIIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 I +++ + Sbjct: 351 VIVPAEQEENED 362 >gi|326578062|gb|EGE27922.1| DNA polymerase III, beta subunit [Moraxella catarrhalis O35E] Length = 385 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C GS T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGSTTLPAEMFFSVCKSLPEETVVIDAPED--TTRCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTAVPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ ++D + V N ++G+A E + V Y+ +++ FN YL +++ + Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 EV L+ +S I D YV+MPMR Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384 >gi|301054217|ref|YP_003792428.1| DNA polymerase III subunit beta [Bacillus anthracis CI] gi|300376386|gb|ADK05290.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis str. CI] Length = 376 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I G+ L Sbjct: 61 IDDEQITTILQVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 + ++ RLI+G++PN +IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + E ++I F+ ++++E + I ++ + Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSAV---------VHLISPVR 374 >gi|224541289|ref|ZP_03681828.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM 15897] gi|224525793|gb|EEF94898.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM 15897] Length = 367 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 95/387 (24%), Positives = 178/387 (45%), Gaps = 25/387 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + R +L+ L R + K+ +P+ + + L + AS +I I I Sbjct: 1 MDFNINRLVLLDALTKVSRAVSLKSPLPILTGIKFDLLEDGLVLTASDSDISIQTTINEG 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ GS+ +S+ + +I+RK+ + GT I+ S F L +F Sbjct: 61 IIINQTGSVVLSSKYILEIIRKIDGDTVHIQVVD---GTLTRITSESSLFDLNGSKSFDF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + F + S K ++E+T FA + +E R L G+ F + + KL +ATD Sbjct: 118 PRIDLNKNGKHFSMKSYEFKKIIEKTLFATSEQETRPVLTGVNFKV--DQHKLVCIATDS 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA I I +I++P+K++ +I+ I+ KD + + +S+ ++ I + Sbjct: 176 YRLAQVSQPIDDDI--QFNIVIPKKSLNQIIHIIE-KDEMIDLYVSDRKVLFVIGQYLVL 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLIDG +PN ++ + +N + L A+ R S++S + VKL++S D+ ++ Sbjct: 233 TRLIDGTYPNTSRLVEDQGSYTMSINSSALLGAISRASLLSDEQSNIVKLTMSPDENILS 292 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + ++G E++ +Y PM I F+ KYL + I +I + + + R Sbjct: 293 SYSQEIGSVEENLTKAFYKGEPMTISFSAKYLADAIRSIGT-----ETIQLRFTEKMRPF 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I G D+ + V++P+R Sbjct: 348 QITGLDE---------SDNIQVVLPVR 365 >gi|229070157|ref|ZP_04203421.1| DNA polymerase III, beta subunit [Bacillus cereus F65185] gi|228712975|gb|EEL64886.1| DNA polymerase III, beta subunit [Bacillus cereus F65185] Length = 376 Score = 266 bits (680), Expect = 5e-69, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQT----IKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------TVHLISPVR 374 >gi|319760165|ref|YP_004124103.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str. BVAF] gi|318038879|gb|ADV33429.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str. BVAF] Length = 369 Score = 265 bits (679), Expect = 5e-69, Method: Composition-based stats. Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 22/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M VER + +L ++ + +P+ H+LL+ N+ L + + E+EI + Sbjct: 1 MTFCVERQSLYPILQKIISVVSNRPRLPILKHILLEINNNCLILIVTNLEVEIIAHVFLE 60 Query: 61 VDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S+TVS LY+I R L A+I EN ++ ++ G S+F L + P S+FP Sbjct: 61 KRYVFRSVTVSGIKLYEIFRNLSACAKIFIKLEN---NKLLVNSGCSSFVLSTLPASDFP 117 Query: 120 STKEEEYVYSFE--LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + + + F ++ + K ++E T FAM + R+YLNGIFF I ++ +++ VATD Sbjct: 118 NVETLKVDCEFNVIISQLMFKKIIELTQFAMGYRDARHYLNGIFFEIEDKVVRV--VATD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 GHRLA+ E+ ++ SII+PR+ + EILR+L+ + VK+ + ++RI + I++ + Sbjct: 176 GHRLAMCEITADT-LSSSHSIIIPRQGIVEILRLLNYTKNLVKIKIYDNRICVKIDNYIV 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LID FPNY+ V+ + V+ L+QA+ RVSI+S+ +++ V +L D+L + Sbjct: 235 HSKLIDSVFPNYKRVLTNNLKLFFEVDRIILKQALKRVSILSNEKLRVVHFNLMHDQLKI 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T +N + E + + Y+ + I FN Y+L+II+ I S + F L SSV Sbjct: 295 TANNFKQETSEEILEILYDNENIGISFNVDYILDIINVIDSKT-----LKFFLTDPVSSV 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I G K A YV+MP+R Sbjct: 350 KIEGIPK--------FYEATYVVMPVR 368 >gi|11320905|gb|AAG33948.1|AF197888_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 97/382 (25%), Positives = 198/382 (51%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R + + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIHNLQKINRFVTKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITVS+ + DI R + + I +++I S + L + P FP Sbjct: 61 KNYTSGHITVSSRKILDICRNSLNSSNIKIEL---CDNKIHIISDKSQYILTTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S+ LK ++E+THF+M +++RYYLNG+ + LC VATDG+ Sbjct: 118 NYHHFHHIAEFCIDSNTLKEMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LCMVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + Q + SI++ R+ + E+ ++L+ S+K+ + ++ I + IE + Sbjct: 176 RLGITQTLLTTQKIESFSIVMTRRGIIELYKLLNVSRQSIKILIGKNSIRIYIEQFIFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FPNY ++ + + +NC L++++ R +I++ + V++ + +++ Sbjct: 236 QLIEGKFPNYDSLFLTKKNNGIILNCMLLKKSLLRAAILTHEKFCGVEIHIQNNQFKALS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ I Sbjct: 296 DNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + Y++M Sbjct: 351 EAE---------NDASTIYIVM 363 >gi|229030374|ref|ZP_04186418.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] gi|228730947|gb|EEL81885.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] Length = 376 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 175/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + + K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAVSAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G+I V A +I++K+ I E + I + L Sbjct: 61 NEDDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQ----IITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 LPAYEFPNVPLIDGHTKIQVETERLIEVFKQTVFAVAKNESRPVLTGVHLELDYN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD HRLA+ E I + S IVP + E+L++++S V + LSES I Sbjct: 175 CVATDSHRLAIRETMISTDV--KASCIVPSATISELLKLMTSNSEFVYIYLSESYIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN ++IP + ++ + Q VDR ++++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNDFQTVINIDRKKILQGVDRSNLLASDWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++L+ + I ++ V Sbjct: 293 NESAIKISSNASQIGKISETQQVDTIQGEKQLNISFDGRFMLDALKAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ A +++ P+R Sbjct: 348 SFSGSMRPILIEA---------GSQSAAIHLISPVR 374 >gi|169335350|ref|ZP_02862543.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM 17244] gi|169258088|gb|EDS72054.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM 17244] Length = 368 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 188/387 (48%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V+R++ L+ L + +N +LL++ D +L + A+ EI+I+ I A Sbjct: 1 MNIKVDRNEFLKALITVSKATTLRNVGS-LEGILLESYDDVLSLYATNKEIQISTIIDAK 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + +++ +L DIVR +G EN + ++ +S F + + FP+ Sbjct: 60 VIREGKLLINSRILSDIVRSFDNGEVEIDADEN---NNIKLTCLNSKFNITAMDHRTFPN 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + V++N+++ T FA AT + L GI N+ED+K VA DG Sbjct: 117 KEVYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKF--VAIDGF 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+A+ + +VP + E+ +IL++ D V +++++ + NI + Sbjct: 175 RMAIRSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 L+ G+F +Y N++P + +++N L A +R +I+S R + L + + L +T Sbjct: 235 SLLQGQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLLT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + G E++N+ + +DI FN +Y+++ + I D++V+ +SSNS Sbjct: 295 SKSA-YGNVEENININLSGEDLDISFNSRYVIDALKVIE-----DEKVILEFNSSNSPCL 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ + Y++MP+RI Sbjct: 349 IKPV---------SSNKFTYLIMPVRI 366 >gi|319440838|ref|ZP_07989994.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM 44702] Length = 366 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 144/385 (37%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T + D+ L I K T P+ VL+ D A ++ IP Sbjct: 1 MKTTFAKHDLARALELTKPAIPSKPTQPILAGVLITVGDDTATFDAFDQSSQVHTTIPCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + + L+D+V KL D +G+ + G F L ++P Sbjct: 61 TSEPGQVLLPHRTLHDVVAKLPDKPITIT----HMGSAAQFTCGPRTFELPPMTLDDYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + S L + A ++ L GI ++ D L ATD R Sbjct: 117 LPDMPPAVG-TIDWSDLAAAIREVGAAAGRDDTLPMLTGI--KVDSHDGALTLAATDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA + +++P + + + R ++ V + + R+ + +R Sbjct: 174 LAHTTLPWDGDDLD---MLIPARDILTLAR--TTWHGDVTIHHDQRRLGFTLGDTRTILR 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LID +FP ++ +IP +D +R++ + AV S+++ Q V LS++S ++ + Sbjct: 229 LIDADFPKWRPLIPKDSDTTIRIDRKTMADAVKFTSVLAGDTGQVV-LSITSGQVTIASK 287 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 G E + ++I F +YLL+ + D + + Sbjct: 288 TAQDGAGEEVIACDTVGNELNIAFTSRYLLDALA-------GDGTALMTFTQPGRPAMVW 340 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 D + K + ++LMP+R+ Sbjct: 341 P-DLPCEEGKVPDADRGHLLMPVRL 364 >gi|6606558|gb|AAF19208.1|AF213933_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 265 bits (679), Expect = 6e-69, Method: Composition-based stats. Identities = 108/385 (28%), Positives = 208/385 (54%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + L R+I + +T+P+ ++L+ N+G++ + A+ E E+ I S Sbjct: 1 MKFNIKNKIFTQHLKKINRLITKNSTLPILENILITVNNGIISLTATNLETELISNIEIS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I R + + I E +++IS +SN+ L + P FP Sbjct: 61 KTYTPGSITVSGQKLLNICRNSSELSDIKISLNKE---KIHISLENSNYILNTLPAENFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++V F ++S +LK ++E+THF+M +++RYYLNG+ + L VATDG+ Sbjct: 118 NHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLE--KNKTSLYTVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +A+ + + + S I+PRK + E+ ++L+ + + V + ++ I + IE L +V Sbjct: 176 RLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++++ + +N L+Q++ RVS++S V++ ++++K + Sbjct: 235 QLIEGEYPDYKSILSRKKQHPIILNNKILKQSLLRVSVLSDKNFCGVEIYITNNKFQVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N KA +S + Y ++I N Y++E+++ ISS + + SN+S+ I Sbjct: 295 NNQHEEKAEDSFKINYYGENIEISINVYYIIEVLNVISSK-----NIFIFFNESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ S YV+M +R Sbjct: 350 ESEEDHSL---------LYVIMLLR 365 >gi|6606554|gb|AAF19206.1|AF213931_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 109/385 (28%), Positives = 214/385 (55%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R+I + +T+P+ ++L+ N+G++ + A EIE+ I S Sbjct: 1 MKFNIINKIFTQHLKKVNRLISKNSTLPILENILITVNNGIISLTAKNLEIELISNIEIS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I + + ++I K N +++I +SN+ L + P FP Sbjct: 61 KTHTPGSITVSGQKLLNICQNSSESSEI---KINLNKDKMHIISDNSNYILTTLPSDNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F ++S +LK ++E+T F+M +++RYYLNGI + L AVATDG+ Sbjct: 118 NHNNFHHISEFFISSEILKKMIEKTQFSMGKQDVRYYLNGILLE--KNKTALYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +A+ + + + S I+PR+ + E+ ++L+ K + V + ++ I +NIE L +V Sbjct: 176 RLGIAKTFLNENV-CIFSAIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRINIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++V+ + + +N L+Q++ RV+++S V++ ++++K ++ Sbjct: 235 QLIEGEYPDYKSVLLRKKNHPIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVSS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N KA +S + Y ++I N Y++E+++ I+S+ + L+ SN+S+ I Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSN-----NIFIFLNESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +S + YV+M +R Sbjct: 350 ESEEDNS---------SLYVIMLLR 365 >gi|296112232|ref|YP_003626170.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4] gi|295919926|gb|ADG60277.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4] Length = 385 Score = 265 bits (679), Expect = 7e-69, Method: Composition-based stats. Identities = 110/404 (27%), Positives = 194/404 (48%), Gaps = 40/404 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ R +L+ + + ++++ + ++ L +G L + AS E+E+T Sbjct: 1 MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60 Query: 61 VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 D C G T+ A + + + + L + + E+ T I+ G + L P + Sbjct: 61 KDGCIQAGGTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + +++ L +L+ T FAMAT+++RYYL G+ F I E L AVATD Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233 GHRLAVA ++ + +I+P KAV E+ R+L + D S V L L + Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235 Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 ++ +S RLI+G+FP+Y+ VIP +NDK + N + R+S++++ Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295 Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 V ++ ++D + V N ++G+A E + V Y+ +++ FN YL +++ + Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 EV L+ +S I D YV+MPMR Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384 >gi|313900815|ref|ZP_07834305.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2] gi|312954235|gb|EFR35913.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2] Length = 372 Score = 265 bits (678), Expect = 7e-69, Method: Composition-based stats. Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M V + + L A R I + +P + + A + L + S ++ I + Sbjct: 1 MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60 Query: 59 ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK+ D +I F + G+ IS + F + Sbjct: 61 EECVLEIRDMGSIVIEAKYILEIVRKI-DADEIEFEMID--GSLTKISGNTAEFRINGMR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P+ + F L LK ++ +T FA + +E R L G+ FH L V Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHCEGN--TLHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA +DI + +I +P K++ E+++ L + V++++++ + I Sbjct: 176 ATDSYRLAKKTIDISESL--NFNITIPAKSLSEVVKTLE-GEGEVEIAVNDKKAQFIIHD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K SLS + Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + ++G + E + + + ++I N +Y+ + I +S V FRL Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFTGSSLEISCNGRYVFDAIKALSGSL-----VTFRLCGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ D D N +++P+R Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369 >gi|312865826|ref|ZP_07726048.1| DNA polymerase III, beta subunit [Streptococcus downei F0415] gi|311098701|gb|EFQ56923.1| DNA polymerase III, beta subunit [Streptococcus downei F0415] Length = 378 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 92/392 (23%), Positives = 178/392 (45%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ ++ L R I KN IP+ + + + + + S +I I +I S Sbjct: 3 NFSINKAFFIQALNTTKRAISSKNAIPILSSLKIDVHSTGITLTGSNGQISIENSIATSD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A+ +IV L D +S + ++V ++ G S L+ Sbjct: 63 ENAGLLITETGSILLEANFFINIVSSLPD---VSLDFKEIEHSQVLLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E + VLK L+ T FA +T+E R L GI + + AV Sbjct: 120 VEQYPRLQEVATSNPLIFDTKVLKTLIAETAFAASTQESRPILTGIHLVLTDNKN-FKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ I+ +++P +++ E + + + +V+V LS S+I ES Sbjct: 179 ATDSHRMSQRKL-ILENSGDNFDVVLPSRSLREFVAVFTDDIETVEVFLSGSQILFRSES 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S R+++G +P+ ++ + E+ + NLR A++R ++S+ + VKL + Sbjct: 238 ISFYARMLEGAYPDTDRLLVSDFETEILFDTNNLRSAMERAHLISNATQNGTVKLEIVDG 297 Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 K+ V++P++GK E ++ + + I FN YL+E + + S + V R S Sbjct: 298 KVSAHVNSPEVGKVNEEIDTLEIDGSDLTISFNPTYLIEALKALKS-----ETVRIRFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D N ++ P+R Sbjct: 353 PVRPFTLTPGDD--------GENFIQLITPVR 376 >gi|291457887|ref|ZP_06597277.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] gi|291419431|gb|EFE93150.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078 str. F0262] Length = 373 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 87/384 (22%), Positives = 173/384 (45%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++ ++ + A + + K+T+P+ +LL A++G + + + E I Sbjct: 1 MKLQFQKDALISSINIAIKAVPSKSTMPIMECLLLDASNGKICLVGNDTEFGIETVCRGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + + A L +I++KL ++S E++ I S F + +EF Sbjct: 61 ILEAGKVALDARLFSEIIKKLPQDNELSVLIESDEHFVTTIRCEKSVFKISGKDGNEFTM 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L+ LK+ + +T F++A E + G F + + +C + DGHR Sbjct: 121 IPGIDRSNSVSLSQFTLKSFINQTIFSVALNESNKKMTGEFLEVKGDLFSVC--SLDGHR 178 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ + +M + IVP KA+ EI RILS V + +++ I + + Sbjct: 179 ISIRRTQLKESCPEMKA-IVPGKALIEISRILSGGLKDEVMIYFTKNHILFEFDDTLVLS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDGE+ + ++ D ++ VN L +++R +I + + SD L + Sbjct: 238 RLIDGEYFHVAQMLSEDYDTKITVNRRELLDSIERSTIFVQDNEKQPLILRISDGLLSLL 297 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D+G+ +++ + + I FN +YL + + NI S + V S +FI Sbjct: 298 ISSDLGRMDAEVSIEKSGNDLMIGFNPRYLADALRNIDS-----ESVSIYFTIPRSPLFI 352 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 R D++ Y+++P+ Sbjct: 353 R----------DDEETYTYMILPV 366 >gi|306821800|ref|ZP_07455395.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] gi|304550167|gb|EFM38163.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii subsp. margaretiae ATCC 43715] Length = 396 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 81/385 (21%), Positives = 180/385 (46%), Gaps = 20/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + D+ + + + + KNT+ + + + +G L + + E+ I +IP Sbjct: 30 MKFKVNQRDLSKAISVVQKAVATKNTMEILKGIYFEIEEGNLLLTTNNMEVGIQTSIPCE 89 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I + A ++ DIVRKL + F + + + +S F ++ +FP Sbjct: 90 VYEEGKIVIDAKIISDIVRKLPNDTI--HFTSIDENDLIEVRCQNSKFNIKYIRCEDFPM 147 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ + KN++ +T++A+++ + FF I++ + +V D R Sbjct: 148 PAYIDERFFVKIEADDFKNMILKTNYAISSNDPNQIYMCHFFKIDKNKFTMFSV--DNFR 205 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 + E + ++I+ + +I + + +K + + I + I+ ++ Sbjct: 206 FVIMEKEFEDISFDEKNLIINGSILTDIAKTIEDGVEFIKFAFDDKHICVIIDDTIITSN 265 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ G F +Y+++IP + + V ++L+ A+DRVS++S+ + +KL + +T Sbjct: 266 LVTGNFIDYESIIPRNEKSTVTVRSSDLKSAIDRVSLLSN--NKLIKLESKDFMMNITSR 323 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N +G A E +++ +I FN ++LL+I+ N+ D+ + ++ +S S I Sbjct: 324 NDQVGNANEIVDIKLEGENFEIAFNCEFLLDILKNVD-----DEYITMKITNSLSPCKIT 378 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 + + N +V++P+RI Sbjct: 379 SESDE---------NYIHVILPVRI 394 Score = 50.2 bits (119), Expect = 6e-04, Method: Composition-based stats. Identities = 47/281 (16%), Positives = 103/281 (36%), Gaps = 20/281 (7%) Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F F + + +E F++ L + A+AT+ L GI+F I E Sbjct: 10 FKFGIFYKLHYIKFLTQEVDMKFKVNQRDLSKAISVVQKAVATKNTMEILKGIYFEIEEG 69 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 +L L + + I ++ + I++ K + +I+R L + D+ S+ E+ Sbjct: 70 NLLLTTNNME----VGIQTSIPCEVYEEGKIVIDAKIISDIVRKLPN-DTIHFTSIDEND 124 Query: 228 -IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV--SIMSSVRIQ 284 I + ++ +++ I E I +++ + + + + +I S+ Q Sbjct: 125 LIEVRCQNSKFNIKYIRCEDFPMPAYIDERF--FVKIEADDFKNMILKTNYAISSNDPNQ 182 Query: 285 AVK---LSLSSDKLCMTVDNP--DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 + +K M + + E ++ ++E + I N L +I I Sbjct: 183 IYMCHFFKIDKNKFTMFSVDNFRFVIMEKEFEDISFDEKNLII--NGSILTDIAKTIED- 239 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVL 380 + + F D + V I S N ++ ++ Sbjct: 240 --GVEFIKFAFDDKHICVIIDDTIITSNLVTGNFIDYESII 278 >gi|148927270|ref|ZP_01810840.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp. GTL1] gi|147887329|gb|EDK72783.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp. GTL1] Length = 366 Score = 265 bits (678), Expect = 8e-69, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 168/388 (43%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + ++ + L R+ K +P+ ++LL+ ++ L + A+ EI IT I A Sbjct: 1 MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV A L+ + + L G + G ++I+ G + + EFP Sbjct: 61 VAQNGAITVPARLMAEFISNLPKGNVELSVE----GAHLHIAAGAYSSTINGMEAEEFPE 116 Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E+ + V+K V +T +++ R +L G++ H E D L ATDG Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGD--LYFAATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL+ ++ + + K IVP + ++LR+L +V++ E+++ + + ++ Sbjct: 175 YRLSERKIGAMKEDLKX---IVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVT 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLC 296 RLIDG+F +Y+ +IP D + + S+ + ++ L L Sbjct: 232 SRLIDGQFVDYRQLIPKGADIASVLRKEEFSRITKIASLFARESGGSITLKTDKEKGTLA 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +G+ + + N +YLLE + I + FR S Sbjct: 292 IHSIASQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSS-----ITFRFSGKLSP 345 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D ++ +++MP++ Sbjct: 346 CRLTATDDEA--------TYQHIIMPLK 365 >gi|309774991|ref|ZP_07670007.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308917245|gb|EFP62969.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 372 Score = 265 bits (677), Expect = 9e-69, Method: Composition-based stats. Identities = 96/391 (24%), Positives = 177/391 (45%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M V + + L A R I + +P + + A + L + S ++ I + Sbjct: 1 MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60 Query: 59 ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A + +IVRK+ D +I F + G+ IS + F + Sbjct: 61 EECVLEIRDMGSIVIEAKYILEIVRKI-DAEEIEFEMID--GSLTKISGNTAEFRINGMR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P+ + F L LK ++ +T FA + +E R L G+ FH L V Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHCEGN--TLHCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA +DI A +I +P K++ E+++ L + V++++++ + I Sbjct: 176 ATDSYRLAKKTIDIAE--ALNFNITIPAKSLSEVVKTLE-GEGEVEIAVNDKKAQFIIHD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG +P +IP D EL ++ +L A+DR S + + + +K SLS + Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ + ++G + E + + ++ ++I N +Y+ + I +S V FRL Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFHGNSLEISCNGRYVFDAIKALSGSL-----VTFRLCGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ D D N +++P+R Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369 >gi|229173346|ref|ZP_04300890.1| DNA polymerase III, beta subunit [Bacillus cereus MM3] gi|228610040|gb|EEK67318.1| DNA polymerase III, beta subunit [Bacillus cereus MM3] Length = 376 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 170/396 (42%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + + + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVNKAISTKAIIPILSGIKITVDQSGITLIASDSNIFIEKLIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + G+I V A +I++K+ I E + I + L Sbjct: 61 TEGDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQ----IITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P EFP+ + + + L + ++T FA+A E R L G+ + E KL Sbjct: 117 LPAYEFPNVPLIDDHAKIQAETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--EHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I ++ S IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETIISTEV--KASCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN ++IP + V+ + Q VDR S++SS V L + Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRKRILQGVDRSSLLSSEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + ++ + +GK E+ + E ++I F+ +++++ + I ++ V Sbjct: 293 DESTIKISSNASQIGKISETQQIDEIQGEKQLNISFDGRFMMDALKAIK-----EETVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I + A +++ P+R Sbjct: 348 SFSGSMRPILIEAGTPSA---------AVHLISPVR 374 >gi|228953017|ref|ZP_04115078.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] gi|228806635|gb|EEM53193.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar kurstaki str. T03a001] Length = 376 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 90/396 (22%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G++ V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKVGTMVVPAKYFIEIIKKMPSDIAIKSKNEQT----IKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|229190784|ref|ZP_04317777.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876] gi|228592654|gb|EEK50480.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876] Length = 376 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|293374956|ref|ZP_06621252.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909] gi|325844316|ref|ZP_08168092.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1] gi|292646433|gb|EFF64447.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909] gi|325489183|gb|EGC91565.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1] Length = 378 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 92/397 (23%), Positives = 181/397 (45%), Gaps = 32/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V+R +L L + + I K +PV + +D L + S +I I +P Sbjct: 1 MKIKVDRQLLLTQLSYISKAIPTKTPLPVLTGIKFVVSDEGLYLTTSDSDITINTFLPLE 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ GSI + +I++KL E G V I G S + L Sbjct: 61 VNDTQVIQIDAVGSIIIPGKYFIEIIKKLNGDTIEISTFE---GNYVTIKCGRSEYTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F +++P+ + + + +LK ++ +T F+ A E R L G+ F + ++ L Sbjct: 118 FDVTQYPNIELIKNDDPIHMEKQLLKTIIRQTVFSTANSENRPVLTGVNFRYDADE--LM 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VATD RL+ V + ++ +I++P +++ E+ +IL +SV + L+ ++I I Sbjct: 176 CVATDSFRLSKKTVPL-NKLHDSFNIVIPGRSLIELSKILDDSHNSVDIYLANNQILFQI 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290 ++S RL+DG +P + +P + E++ N L A DR ++++ + VKL++ Sbjct: 235 GNISFQSRLLDGIYPETKEFVPTTFGIEIKANYHELLNAFDRAALIARDQVSNVVKLNIL 294 Query: 291 -SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 KL +T +P++GK E + V + + I + ++++ + I+ + +V+ Sbjct: 295 PEESKLLITAQSPEVGKVEEEVQVEMISGGELRIACSALFIIDALKAIN-----NSDVIM 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +R K +++P+R+ Sbjct: 350 SFNGDMRPFVLRDK---------YDETTIQLIVPVRM 377 >gi|296503248|ref|YP_003664948.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] gi|296324300|gb|ADH07228.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] Length = 376 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 177/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|183219429|ref|YP_001837425.1| DNA polymerase IIIsubunit beta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] gi|189909575|ref|YP_001961130.1| DNA-directed DNA polymerase subunit beta [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167774251|gb|ABZ92552.1| DNA-directed DNA polymerase, beta subunit [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Ames)'] gi|167777851|gb|ABZ96149.1| DNA polymerase III, beta chain [Leptospira biflexa serovar Patoc strain 'Patoc 1 (Paris)'] Length = 372 Score = 265 bits (677), Expect = 1e-68, Method: Composition-based stats. Identities = 87/389 (22%), Positives = 176/389 (45%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV ++ L+ + +I + ++ +Q + + + A+ EI I ++P++ Sbjct: 1 MKFTVNTTEFLKAINSVDGVISVREIKSALSNLKIQTGENEVYLSATDLEIAIKTSVPST 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS----HGDSNFYLQSFPES 116 + G+ ++ A L I + L + EN +E I+ D+ F + Sbjct: 61 IGEKGTASLPAKQLSSIFKNLNFDTSLLTTTENSENSETTITDASGKMDTKFKVNGIDSE 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + + + + E ++ + +T +AMA EE R+ NG+F + D L V T Sbjct: 121 DIKTIPKVDEASVVEFPCQTIREMFRKTSYAMAIEETRFVFNGLFLKPDNTD--LIVVGT 178 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG RL+ Q +I+P KAV E+L+++ K+ + K+ E +I+++ ++ Sbjct: 179 DGRRLSKIVRKFPKQFPFKNGVIIPHKAVREMLKMMEGKE-TAKIGFVEEQIYVSSGNVE 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LIDG FP+Y+ VIP + +RV + + + I + + ++L+ S + Sbjct: 238 LLFKLIDGNFPDYEQVIPKQTTESVRVVKADFLTFLKQALISAEEPSKQIRLAFSKGNVN 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ NP +M + YN + I F YL +++ + D EV+ +S++ Sbjct: 298 ISSSNPGTMMFDHNMPIEYNGETITIAFKGDYLSDVVKAVD-----DPEVILEFTTSSAP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + + + V+MPM++ Sbjct: 353 VLFKDP---------SDSDFVSVIMPMKL 372 >gi|30020817|ref|NP_832448.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579] gi|229128034|ref|ZP_04257016.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4] gi|229145271|ref|ZP_04273660.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24] gi|29896369|gb|AAP09649.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579] gi|228638110|gb|EEK94551.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24] gi|228655309|gb|EEL11165.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4] Length = 376 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 175/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKFLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + SES I Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATINELLKLMNSNSEFVYIYFSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|229103294|ref|ZP_04233977.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28] gi|228680133|gb|EEL34327.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28] Length = 376 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 173/396 (43%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS + I IP S Sbjct: 1 MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEQIATILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQ----IITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P +EFP+ ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLV 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + IVP + E+L++++S V + LS+S + Sbjct: 175 CAATDSHRLAIRETLVSSDA--KANCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + + RLI+G++PN N+IP + V + Q VDR S+++S V L + Sbjct: 233 GTTTFYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ V Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAI-----TEEMVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|229110137|ref|ZP_04239713.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] gi|228673329|gb|EEL28597.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] Length = 376 Score = 264 bits (676), Expect = 1e-68, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQ---------FAAVHLISPVR 374 >gi|228921359|ref|ZP_04084683.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] gi|228838304|gb|EEM83621.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar huazhongensis BGSC 4BD1] Length = 376 Score = 264 bits (676), Expect = 2e-68, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 177/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQSLSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIKKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++ V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNGNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|227500985|ref|ZP_03931034.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] gi|227216758|gb|EEI82156.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC 35098] Length = 370 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 97/387 (25%), Positives = 186/387 (48%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + D++ + A + + + I + + + D L +KA EI I + A Sbjct: 1 MKFRISQQDLMSAINIAMKAVSKSTNIQIHELIYFECFDNSLFLKAFDGEIAIKTKVDAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + V A L+ +IVRKL + I K+ ++NI SNF L +F E Sbjct: 61 VDEKGEMAVKASLIANIVRKLPNDIVIVENKDG----KINIKCSSSNFNLLAFDYFEKNE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+ + VLK + +T FA + +E + L GI F D L VA DG+R Sbjct: 117 L-SIPDTLAIEIDNDVLKRSISQTEFATSLDETKLALTGILFEFK--DGFLNMVALDGYR 173 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ +V + + I+P++++ E RI+S D+ K+ +E+ + E+ +M Sbjct: 174 VSLKKVKLEYPTDYEDSEYIIPKRSLLEWSRIVSD-DTKTKLYKNENDLIFVSENTTMQC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 ++ID F +Y+N+I ++ + V+ L ++DR +++ R +K+ +S DKL + Sbjct: 233 KVIDKNFIDYRNIINDISETSIIVDKRELINSLDRAQVLADPGRANLIKIEIS-DKLMLI 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E+++V ++I FN +Y+ E + S + + S+ + Sbjct: 292 KSNSEIGDVREAIDVDQQGPDLEIAFNARYMQEGVKACDSTK-----IKLNFKSALNPCL 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + N+ + Y+++P+R+ Sbjct: 347 IYPE-----NSSYENEDFTYLVLPVRL 368 >gi|269217834|ref|ZP_06161688.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] gi|269212769|gb|EEZ79109.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848 str. F0332] Length = 377 Score = 264 bits (675), Expect = 2e-68, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 165/390 (42%), Gaps = 23/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MK+ VE + + R I + ++PV + ++A+ DG + + + P+I I A Sbjct: 1 MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHAVIEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +VD G+ V LL D R L + G ++ + G S+ +QS P ++P Sbjct: 61 AVDDPGTTLVHGRLLSDFARALPNKP----IDMELKGAKLEVVCGSSHISMQSMPLEDYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S V S + ++ + V + A ++++ L + I + + L +ATD + Sbjct: 117 SAPPMPEV-SGVVDGALWQETVAQVVTAASSDDTLPLLVSVCIEIEGKTMSL--MATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSES----RIHLNIES 234 RLAV ++ I+ R + + +I + L S V++++ S I + Sbjct: 174 RLAVRDLTWEPANEDASHRILVRASRLSDIAKALGSV-GKVELAIDNSGRTGMIGFSAAG 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 RLIDGE+P +N+ P + + A+ R ++ + AV+LS S + Sbjct: 233 RHNVARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVV-EKNSAVRLSFSEGQ 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + D + E++ + + + FN +L E + S+ V S++ Sbjct: 292 VILEAGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSA-----PYVRLSFTSAS 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + + ++ +LMP+R Sbjct: 347 KPAVLTAQ---PEIDGEDDQEFRLLLMPIR 373 >gi|288926238|ref|ZP_06420164.1| DNA polymerase III, beta subunit [Prevotella buccae D17] gi|315606364|ref|ZP_07881380.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae ATCC 33574] gi|288337017|gb|EFC75377.1| DNA polymerase III, beta subunit [Prevotella buccae D17] gi|315252055|gb|EFU32028.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae ATCC 33574] Length = 374 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ + + L R+I KN +P+ L Q + L I A E + A+ Sbjct: 1 MRFTLSSTALSSRLNTLARVINSKNALPILDCFLFQVENNRLLITAGDGENVMQSALELD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S + G V + D V++L + ++ +G NF Q E+P Sbjct: 61 SCEGEGEFAVPNRTILDAVKELPEQPLNFDIDTQSFAIKIVYQNGLYNFTAQ--NAEEYP 118 Query: 120 ST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E+ + + ++VL + + R+ FA A +E+R +NGI+F + + L VA+DG Sbjct: 119 RMQPVEDGATTMTMDAAVLVDNISRSLFATAQDELRPVMNGIYFDLTPDA--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + I+P+K + +LS V V ++ + + Sbjct: 177 HKL-VRNKNFNIKSETPAAFILPKKPASLLKNVLSKDGGEVIVKFNDRSAEMRFSDGVLY 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N + ++ L A+ RV +S Q V+ + S ++ ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPNRVTIDRRALLGALRRVLPFASESSQLVRFHVESGRMELS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E + Y+ PM I F + EI+ ++ S DEVV L + + Sbjct: 296 GEDIDFATSAKEQVTCEYSGQPMSIGFKGGSMQEILSSLES-----DEVVIELADPSRAG 350 Query: 358 FIRGKDKDSKNN 369 + + + Sbjct: 351 TVMPSQQPENED 362 >gi|229116204|ref|ZP_04245594.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3] gi|228667036|gb|EEL22488.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3] Length = 376 Score = 264 bits (674), Expect = 2e-68, Method: Composition-based stats. Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V I + L + I K IP+ + + A+ + + AS + I IP S Sbjct: 1 MEFIVNHKHITQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEQIATILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQ----IITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P +EFP+ E ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 LPANEFPNVPLIEDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLV 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP + E+L++++S V + LS+S + Sbjct: 175 CAATDSHRLAIRETLISSDA--KANCIVPSATISELLKLMNSHTEFVYIYLSDSHVIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ V Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAI-----TEEMVTL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|224458008|ref|ZP_03666481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp. tularensis MA00-2987] gi|254875663|ref|ZP_05248373.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] gi|254841662|gb|EET20098.1| DNA polymerase III [Francisella tularensis subsp. tularensis MA00-2987] Length = 329 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 97/324 (29%), Positives = 181/324 (55%), Gaps = 7/324 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + R D+L+ L + K+T+P+ +L ++ L+I AS + EI+ I S Sbjct: 1 MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + ++A +Y+IVR L + + I F +V I +S F L S +P Sbjct: 61 CNTTIKLALNADKIYNIVRSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPL 117 Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 SF+L+ +++ + F+MA ++ RY+LNG+F+ IN L+ AV+TDGH Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+++ E I +++ S I+P+KA+ E+ +I+ + ++K+ L ++ + + + Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LIDG +P+YQ VIP +N K L V+ + ++ R SI+++ + + V+L++S ++L ++ Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDI 322 +NPD KA + + V YN+ PM+I Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEI 319 >gi|330835985|ref|YP_004410626.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374] gi|329747888|gb|AEC01244.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374] Length = 371 Score = 264 bits (674), Expect = 3e-68, Method: Composition-based stats. Identities = 91/384 (23%), Positives = 186/384 (48%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ I + + A ++N++ + +VLL+ + LL IKA+ ++ IP Sbjct: 1 MKFVCQKATIFKEISLALDFTSQRNSLSIVSNVLLETKENLLVIKATDQKVGFHSQIPVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS TV I+R L + + K +L E +F L++ +FP Sbjct: 61 TLEEGSTTVFCDKFLGILRSLPETDILFEEKNEKLYIEPV--AQKMDFQLRTIGSDKFPD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +E V F ++ ++V +T FA++ +E RYY++G++ L VATDG R Sbjct: 119 LEEHSNVPFFTISQKDFLDMVNQTIFAISEDETRYYMSGVYLEY--NTSSLIMVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L+ E I I + PS+I+P K + ++R +++ + + ++ ++E+ I + + Sbjct: 177 LSYIERKIEETIPRFPSVIIPAKFLT-LIRKMATGEGTFRLGVTENTIFASFGGQFIYSA 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP S + + ++ +AV RVS+ + + + L + + + ++ + Sbjct: 236 LINGKFPNYRRVIPESQSTSVITSVADILEAVKRVSLFVETKAKKIFLDIDQNGITVSSE 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+G A E++ Y+ P I NY Y++ + + ++ + ++ + Sbjct: 296 ENDLGIARETITADYSGEPCRISLNYGYIMSPLRVMEGEKT-----RISFTDTGKALTLS 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + + + F+++MPM+ Sbjct: 351 PE---------PERDYFHIIMPMQ 365 >gi|218233276|ref|YP_002367414.1| DNA polymerase III subunit beta [Bacillus cereus B4264] gi|218161233|gb|ACK61225.1| DNA polymerase III, beta subunit [Bacillus cereus B4264] Length = 376 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 179/396 (45%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEIILSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ +++++ + I ++++ Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EEKITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|315222843|ref|ZP_07864728.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211] gi|315188079|gb|EFU21809.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211] Length = 378 Score = 263 bits (673), Expect = 3e-68, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 ++ ++ L+ L R I KN IP+ V + + + + S +I I I Sbjct: 3 NFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISIKN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 V GSI + A ++V L D E + ++ ++ G S L+ Sbjct: 63 ENAGLLVTSSGSILLEATFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L +SVLKN++ T FA +T+E R L G+ F + E L V Sbjct: 120 ADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + +++P +++ E + + +V++ + +++ E+ Sbjct: 179 ATDSHRMSQKKIVLEKN-GDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFRSEN 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + NLR A++R ++S+ + VKL + + Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEIING 297 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V++P++G+ E ++ + + I FN YL++ + I+S++ V S Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESISGQNLTISFNPTYLIDSLKAINSEK-----VTISFIS 352 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + N ++ P+R Sbjct: 353 AVRPFTLVPNED--------TENFIQLITPVR 376 >gi|300213941|gb|ADJ78357.1| DNA polymerase III, beta chain [Lactobacillus salivarius CECT 5713] Length = 352 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 75/361 (20%), Positives = 162/361 (44%), Gaps = 29/361 (8%) Query: 35 LQANDGLLEIKASGPEIEITGAI-------PASVDVCGSITVSAHLLYDIVRKLQDGAQI 87 + + L + S +I I I ++ G++ + A +IV+KL + Sbjct: 1 MDLSKDALTLTGSNSDISIETIISIADDNAALQIEQEGAVVLPARFFSEIVKKLPEQ--- 57 Query: 88 SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147 + E + I+ G + F + E+P E + + +LK ++ +T A Sbjct: 58 TMTIEINERFQATITSGSAEFTINGLNAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIA 117 Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 ++ +E R L GI I + +L AVATD HRL+ + + + +I+P K++ E Sbjct: 118 VSNQESRPILTGIHLVIK--NGELLAVATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSE 175 Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267 + +++S D ++++ +SE++ + + S RL++G++P+ + +IP ++ + N Sbjct: 176 LSKMISDSDENIEIQISENQALFILGNTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVE 235 Query: 268 LRQAVDRVSIMSSV-RIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNV-YYNECPMDIC 323 L Q+++R S++S R VKL+++ + ++ + P++G E ++ ++I Sbjct: 236 LLQSIERASLLSHEGRNNVVKLAINPSVQSVVLSGNTPEVGNVEEELHFKNLEGSELEIS 295 Query: 324 FNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 FN Y+ + + + E+ I + K N ++ P+ Sbjct: 296 FNPDYMKDALRSFGQS-----EITIAFTQPLRPFTIVPTED--------KDNFVQLITPV 342 Query: 384 R 384 R Sbjct: 343 R 343 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 22/201 (10%), Positives = 62/201 (30%), Gaps = 16/201 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG---PEIEITGAIP 58 ++TV + +++ + + + P+ + L +G L A+ I + Sbjct: 99 QLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIKNGELLAVATDSHRLSQRII-KLS 157 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + D + + L ++ + + D + + +E + + L + Sbjct: 158 GADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILGNTSFYTRLLEGKYPDT 217 Query: 119 PSTKEEEYVYSFELASSVLKNLVER------------THFAMATEEIRYYLNGIFFHINE 166 + + + + L +ER A+ L+G + Sbjct: 218 ERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINPSVQSVVLSGNTPEVGN 277 Query: 167 EDLKLCAVATDGHRLAVAEVD 187 + +L +G L ++ Sbjct: 278 VEEELHFKNLEGSELEISFNP 298 >gi|282878678|ref|ZP_06287447.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310] gi|281299223|gb|EFA91623.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310] Length = 374 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 174/386 (45%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ S + L ++I KN++P+ L D L I AS E + ++ Sbjct: 1 MRFTLSSSALNSRLQTLSKVINSKNSLPILDSFLFDIQDKQLNITASDSENVMRTSLQLD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D V + + D V++L + L ++ +G NF Q +E+P Sbjct: 61 ECDGESKFAVPSRTILDAVKELPEQPLTFEVDVTNLTIQIQYQNGVYNFTAQ--NAAEYP 118 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++ + + + +L + + R+ FA A +E+R +NGI+F + + L VA+DG Sbjct: 119 ESQAIPDGATVITMNAGILNDNINRSLFATAQDELRPVMNGIYFDLTSDS--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + S I+P+K + +L+ + + ++ S+S Sbjct: 177 HKL-VRNKNFKLKSETPASFILPKKPAMLLRNVLTKDEGDAVIKFDTKNAEIHYAGGSLS 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP N +L V+ L A+ R+ +S Q V+L L + KL ++ Sbjct: 236 CRLIEGRYPNYNSVIPQDNPNQLTVDRKGLLGALRRILPFASESSQLVRLHLETGKLELS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y+ M+I F L EI+ N+ S ++V +L + + Sbjct: 296 SEDIDFATSAKESIVCDYSGQTMNIGFKGSSLTEILTNLES-----EDVTIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I ++ + ++MPM Sbjct: 351 VIVP------TTQEEDEDILMLIMPM 370 >gi|288800440|ref|ZP_06405898.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299 str. F0039] gi|288332653|gb|EFC71133.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299 str. F0039] Length = 374 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 11/371 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK + + + L ++I KNT+P+ L + ND +L I S E + +P Sbjct: 1 MKFKLSSTSLNNSLQTLAKVIASKNTLPILESFLFEVNDNVLTITGSDNENVMRTTLPLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G I + + D+V++L + N EV +G NF Q P Sbjct: 61 ESDGDGVIAIPSRTTLDVVKELPEQPLAFDIDTNNFNVEVTYQNGKYNFTAQDGTAYPKP 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + +++L + R+ FA+ ++++R +NG++F + L + VA+DGH Sbjct: 121 E-GVSEGTSVITIPANILNANITRSMFAVGSDDMRPVMNGLYFDLQTTGLSI--VASDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +L + + A + I+P+K + +L +S V + + +N S +++ Sbjct: 178 KLVRNVISTITG-ATPAAFILPKKPATLLKNVLPKDNSDVVIKFGTNCAEINFASGTLTC 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G +PNY +VIP SN ++ ++ +L A+ RV +S Q ++ L + KL ++ Sbjct: 237 RLIEGRYPNYSSVIPESNPNQVTIDRLSLLGALRRVLPFASESTQLIRFKLEAGKLEISS 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ D A E++N Y M I F + +I++++ S DEV +L + + Sbjct: 297 EDIDFSTSAKEAVNCDYTGNNMSIGFKGGSMTDILNSLES-----DEVTIQLADPSRAGL 351 Query: 359 IRGKDKDSKNN 369 I + + Sbjct: 352 ILPSVQPENAD 362 >gi|13398088|gb|AAK21713.1| DnaN [Buchnera aphidicola] Length = 368 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 102/383 (26%), Positives = 197/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I L VATDG+ Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++L + Sbjct: 236 AQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQLKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|11320909|gb|AAG33950.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 263 bits (672), Expect = 4e-68, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 201/383 (52%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFNIKNNIFVQHLQKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GSITVS+ L I R + + I + ++++ S++ L + P FP Sbjct: 61 QHYISGSITVSSRKLLQICRNSSNLSNIQIELHD---NKIHVISDKSHYTLNTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + Y+ + S +L+ ++E+ +F+M +++RYYLNG+ I + L VATDG+ Sbjct: 118 NHQNFCYISEITIQSRILREIIEKIYFSMGKQDVRYYLNGMLCKIIDNS--LHMVATDGY 175 Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL +++ + +I K SII+ RK + E+ +L+ VKV + S I + I L + Sbjct: 176 RLGISKTLLLKEEIIKNFSIIIARKGITELYXLLNFSXQLVKVFIGRSNIRIYIXXLIFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FP+Y+++ + + ++C L+Q++ R +I++ + +++ ++ ++ + Sbjct: 236 AQLIEGKFPDYESIFLKKKNNGILIDCQLLKQSLSRAAILAHEKFCGIEIHINKNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A + ++ Y ++I N Y+L+I++ I+S ++ L+ SN+S+ Sbjct: 296 SDNQEEETAEDIFDINYIGPSIEISINVYYILDILNVINSQ-----NILLFLNHSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + N + Y++M Sbjct: 351 IEAE---------NDASTIYIVM 364 >gi|161621802|ref|YP_054725.2| DNA polymerase III subunit beta [Propionibacterium acnes KPA171202] gi|289424627|ref|ZP_06426410.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187] gi|289155324|gb|EFD04006.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187] Length = 386 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 175/402 (43%), Gaps = 35/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 1 MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G VS LL DI R L + + ++++ G + F LQ+ P E+P Sbjct: 61 VDEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + +SV V + A +E+ G+ IN E L L +ATD +R Sbjct: 117 LPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 +A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 174 MALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDG 232 Query: 235 ----LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ + Sbjct: 233 ANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVI 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVD 343 + D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 292 NDDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT----- 345 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 346 PYVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 384 >gi|229045382|ref|ZP_04192044.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] gi|228724982|gb|EEL76277.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] Length = 376 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 89/396 (22%), Positives = 177/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISIKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G+ ++ K Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|157827170|ref|YP_001496234.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389] gi|157802474|gb|ABV79197.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389] Length = 379 Score = 262 bits (671), Expect = 5e-68, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N I ++ L A DGLLE+ ++ ++ ++ I V Sbjct: 3 KVIVETKTLVQALGFASSVVEKRNVISELANIKLSAKDGLLELSSTNMDLYLSQKIGVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G +TVS L DIV+KL D + T + I+ + F L + P FP Sbjct: 63 VSEGELTVSTKTLNDIVKKLPDSEL---TLTDLGTTGLEITGKNCRFNLFTLPVESFPVM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNGI+ H+ D + A +TDGHRL Sbjct: 120 DNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVK--DSEFYAASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +V+ V + +I +I+P+K+ EIL+I+ ++ +++ LS ++I E++ M Sbjct: 178 SVSSVVLAEKIED-FGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y + IP ++ +L +N ++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEI 296 Query: 298 TVDNPDMGKAIESMN--------VYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N Y+ +DI FN +YL +++ I SD V Sbjct: 297 SAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++ V I+ + +V+MP+++ Sbjct: 352 YFSSVSAPVLIKFPESPKD---------IFVVMPVKV 379 >gi|282853040|ref|ZP_06262377.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139] gi|282582493|gb|EFB87873.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139] Length = 386 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 35/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ER + E + A R + + T+P+ +L++A + + AS E + A Sbjct: 1 MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G VS LL DI R L + + ++++ G + F LQ+ P E+P Sbjct: 61 VDEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +SV V + A +E+ G+ IN E L L +ATD +R Sbjct: 117 LPHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 +A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 174 MALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDG 232 Query: 235 ----LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ + Sbjct: 233 ANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVI 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVD 343 + D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 292 NDDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT----- 345 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 346 PYVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 384 >gi|6606560|gb|AAF19209.1|AF213934_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 262 bits (671), Expect = 6e-68, Method: Composition-based stats. Identities = 105/385 (27%), Positives = 214/385 (55%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + L R+I + NT+P+ ++L+ N+ ++ + A+ E E+ +I S Sbjct: 1 MKFNIKNKIFTQHLKKINRLISKNNTLPILENILITVNNDIVSLTATNLETELISSIKTS 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 GSITVS L +I + + ++I + +++I DSN+ L + P FP Sbjct: 61 NTHTPGSITVSGQKLLNIXQNSSELSEIKISLNED---KMHIVSDDSNYILTTLPSDNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F ++S VLK ++E+T F+M +++RYYLNGI N++ L AVATDG+ Sbjct: 118 NHNNFHHISEFFISSDVLKKMIEKTQFSMGKQDVRYYLNGILLEKNKKS--LYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + + + S+I+PR+ + E+ ++L+ K + V + ++ I ++IE L +V Sbjct: 176 RLGISKTALKENV-CIFSVIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRIHIEKLIFTV 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+GE+P+Y++++ + +N L+Q++ RVS++S +++ ++++K + Sbjct: 235 QLIEGEYPDYKSILLRKKKHPIVLNNKILKQSLLRVSVLSXKNFCGIEIHITNNKFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +N KA +S + Y ++I N Y++E+++ I+S + ++ SN+S+ I Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSK-----NIFIFVNESNNSIHI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +S + YV+M +R Sbjct: 350 ESEEDNS---------SLYVIMLLR 365 >gi|148244171|ref|YP_001218865.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius okutanii HA] gi|146325998|dbj|BAF61141.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius okutanii HA] Length = 367 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 105/386 (27%), Positives = 196/386 (50%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++LE L +IE+K T+P+ HVL+Q + LL + + EIEI + Sbjct: 1 MNIQLRVKELLEPLQTVISVIEKKQTLPILAHVLIQLENNLLTLTTTDMEIEIKTSQIIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S TV A L +I++KL + I F N +++ I ++F L +F +FPS Sbjct: 61 NKEEISFTVYAKDLINIIKKLPENTIIKFIINN---SKIYIKVNKNSFELNTFRHQDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + + +LKNL+E+T F+M ++IR YLNG++F IN+ + + V TDGHR Sbjct: 118 LPKIKNKKNITIKRKILKNLIEKTSFSMGNQDIRAYLNGLYFEINKNN--IVVVTTDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 L++ ++ ++I+PRK++ E ++L+ + V + S + +L+ + ++ Sbjct: 176 LSIGKIKQANNSLNKKTVILPRKSIIEFTKLLNKNEHEEVNIYTSNNYFYLSTNNTTIIS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FPNY VIP + + +N + ++ + SI + VKL + +L + Sbjct: 236 KLINSKFPNYLPVIPTDFNNTIIINRLDFLNSLQQASIFVEEHTKGVKLIFKNSQLYIFS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N + G+A + ++I FN YL+ I++ ++++E+ + N S + Sbjct: 296 -NSERGQAKTQIKTKNFNKKIEIAFNINYLISILEKLNTNEINM----IIPNGKNKSCLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D Y++MPMR+ Sbjct: 351 NSINDDI---------YQYIVMPMRL 367 >gi|11320913|gb|AAG33952.1|AF197892_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 102/382 (26%), Positives = 209/382 (54%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFNINNKIFIQYLKKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELIANIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D + GS TVS+ + DI R D + I + +++I+ +S++ L++ P FP Sbjct: 61 EDCISGSTTVSSQKILDICRYSSDLSDIKIELSQD---KMHITSDNSHYILKTLPIDNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +V F + S+ L++++E+THF+M +++RYYLNG+ I + L VATDG+ Sbjct: 118 NHNSFHHVVEFFIHSNSLRDMIEKTHFSMGKKDVRYYLNGMLLEIIDNS--LHMVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A+ + + +I++ R+ + E+ ++L+ S+K+ + ++ I + I++L + Sbjct: 176 RLALAKTLLNQIKKQSFAIVIARQGIIELYKLLNVSKQSIKILIGKNNIRIFIKNLIFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G FPNY +V + + +NC L++++ R +I+S + V++ +++++ + Sbjct: 236 QLIEGTFPNYTSVFLKKKNNGIILNCKLLKRSLLRTAILSHEKFCGVEIHINNNEFKVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + + YN ++I N Y+L+I++ ISS + ++ ++ SN+S+ I Sbjct: 296 DNQEEETAEDKFQIDYNNPSIEISINVYYILDILNTISS-----ENILLFVNHSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + Y++M Sbjct: 351 EAE---------NDASTIYIVM 363 >gi|254424267|ref|ZP_05037985.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335] gi|196191756|gb|EDX86720.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335] Length = 344 Score = 262 bits (670), Expect = 6e-68, Method: Composition-based stats. Identities = 81/357 (22%), Positives = 167/357 (46%), Gaps = 25/357 (7%) Query: 36 QANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 A + + + I A VD G+ T+ A LL DIV +L + E+ Sbjct: 4 DAAAQTVTLVGFDETLGIQTTFAAQVDESGTTTLPAKLLGDIVSRLPNEDI--DISEDND 61 Query: 96 GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 V +S + ++ ++P+ E E + ++++ L + FA +++E + Sbjct: 62 EPVVTLSCSAGRYQVRGLSAEDYPNLPEIESTDTVKISADALVEGLRGALFATSSDETKQ 121 Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRIL 212 L G+ +E L+ ATDGHRLAV + ++ +P KA+ E+ RIL Sbjct: 122 VLTGVHLTAMDESLEF--AATDGHRLAVVNTIDETGTSTPDLEMNVTIPGKALRELERIL 179 Query: 213 SS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 + V + L E+++ ++ ++ RL+DG++PNY +IP +++L ++ Sbjct: 180 QAYPSSEPVALKLDETQVVFDLGRQRITTRLLDGQYPNYNQLIPKQFERQLTLDRKQFVS 239 Query: 271 AVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 +++R+ +++ R VKL++S+ L ++V+ ++G +E++ +DI FN +Y Sbjct: 240 SLERIGVIADQRNNIVKLTISNTQQSLALSVEAQEVGSGLENLPAQVTGDDLDIAFNVRY 299 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 LLE + + + E+ + +++ S ++ Y++MP++I Sbjct: 300 LLEGLKALPTS-----EIQVQCNTATSPSVLKP---------LGGTKITYLVMPVQI 342 Score = 44.8 bits (105), Expect = 0.022, Method: Composition-based stats. Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 20/230 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + ++E L A T V V L A D LE A+ A+ ++D Sbjct: 96 VKISADALVEGLRGALFATSSDETKQVLTGVHLTAMDESLEFAATD---GHRLAVVNTID 152 Query: 63 VCGS--------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY--LQS 112 G+ +T+ L ++ R LQ T+V G L Sbjct: 153 ETGTSTPDLEMNVTIPGKALRELERILQAYPSSEPVALKLDETQVVFDLGRQRITTRLLD 212 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +++ L + +ER N + I+ L Sbjct: 213 GQYPNYNQLIPKQFERQLTLDRKQFVSSLERIGVIADQRN-----NIVKLTISNTQQSL- 266 Query: 173 AVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKV 221 A++ + + ++ AQ+ I + + E L+ L + + V+ Sbjct: 267 ALSVEAQEVGSGLENLPAQVTGDDLDIAFNVRYLLEGLKALPTSEIQVQC 316 >gi|51473607|ref|YP_067364.1| DNA polymerase III subunit beta [Rickettsia typhi str. Wilmington] gi|81610796|sp|Q68WW0|DPO3B_RICTY RecName: Full=DNA polymerase III subunit beta gi|51459919|gb|AAU03882.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str. Wilmington] Length = 381 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 111/397 (27%), Positives = 206/397 (51%), Gaps = 31/397 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G ITVS L DIVRKL D + ++ I + F L + P S FP+ Sbjct: 63 LSEGEITVSTQTLSDIVRKLPDSELTLTELD---IMKLEIKGQNCQFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + SF+++ + ++E T F+++ +E RY LNGI+ HI +++ A +TDGHRL Sbjct: 120 DSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKE--FFAASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSESRIHLNI-ESLSM 237 +++ + + +I K +I+P+K+ EIL+I+ +++ LS ++I E+ + Sbjct: 178 SISWITLEEKI-KNFGVILPQKSAEEILKIVKDLKNIHEDIEILLSSNKIKFICNENTIL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +A+KLSLS L + Sbjct: 237 LSKLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTLEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E + + + + I FN +YL +++ + S+ V E+ F Sbjct: 297 SAVGEARGNAKEIITASQDKESFYEYNCDESLVIGFNPQYLEDVLKAVKSNLV---ELYF 353 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+++ V I+ +V+MP+++ Sbjct: 354 SDISASAPVLIKFPQNPKD---------IFVIMPVKV 381 >gi|189467073|ref|ZP_03015858.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM 17393] gi|189435337|gb|EDV04322.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM 17393] Length = 355 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 95/352 (26%), Positives = 171/352 (48%), Gaps = 13/352 (3%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVR 79 I KN +P+ L + DG L + S E + ++ D G V+A + D ++ Sbjct: 2 INSKNALPILDCFLFELKDGTLSVTVSDSETTMVTSVEVNESDADGRFAVAAKTILDALK 61 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLK 138 ++ + F+ N E+ + + + + L EFP + + E+ +SVL Sbjct: 62 EIPEQP--LSFEVNTDSLEITVQYQNGKYSLMGQNADEFPQSAMLGDNAVRVEMEASVLL 119 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 + R FA A +E+R +NGI+F I ED+ + VA+DGH+L V + A+ + + Sbjct: 120 GGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDGHKL-VRCKTLAAKGNERAAF 176 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 I+P+K I +L + V + E +E M RLI+G +PNY +VIP +N Sbjct: 177 ILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMVCRLIEGRYPNYNSVIPQNNP 236 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNE 317 ++ V+ L A+ RVSI SS +KL + +++ ++ + D A E++ Y+ Sbjct: 237 YKVTVDRIQLVGALRRVSIFSSQASSLIKLRMQPNQIVISAQDIDFSTSAEETLACQYDG 296 Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 PM I F +L++I++NI++ DEV+ L + + I +++ + Sbjct: 297 NPMSIGFKSTFLIDILNNIAA-----DEVIIELADPSRAGVIIPVEQEENED 343 >gi|51244500|ref|YP_064384.1| DNA polymerase III, beta chain [Desulfotalea psychrophila LSv54] gi|50875537|emb|CAG35377.1| probable DNA polymerase III, beta chain [Desulfotalea psychrophila LSv54] Length = 376 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 93/389 (23%), Positives = 183/389 (47%), Gaps = 25/389 (6%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 TV + D+LE LG I + T+ + +VL++ ++G L + A+ EI + I A + Sbjct: 6 TVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIKAEIHG 65 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 GS+T+ + +++IVR + E + + V I G S + L E+P E Sbjct: 66 EGSLTLPSKKIFEIVR---ESGSEKISIEEKENSWVVIKAGQSTYNLAGMASDEYPEFPE 122 Query: 124 EEYVYSFELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLK--LCAVATDGHR 180 + S + + L+E+ F++A +E Y L I F +E K L +++DGHR Sbjct: 123 YDEDSFTVFESYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMISSDGHR 182 Query: 181 LAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 L++ ++ + P ++P+K V E + +KD S++VS ++ L M Sbjct: 183 LSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKD-SIEVSFEHDKLILRNNQDVM 241 Query: 238 SVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 V L GEFP Y+ ++ + L + ++ R+++ + ++L++ D + Sbjct: 242 VVSLKTGEFPQYKAIVDAVQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQLAIDKDFMV 301 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N D+G A + + Y+ P+ + FN +Y ++ + + +++ ++SSNS Sbjct: 302 LSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYFIDTLQAMECEKIKA-----YINSSNSP 356 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I N D+ ++MPM++ Sbjct: 357 CLI---------NSDDDPGFTSIIMPMQL 376 >gi|153839072|ref|ZP_01991739.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810] gi|149747455|gb|EDM58409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810] Length = 268 Score = 262 bits (670), Expect = 7e-68, Method: Composition-based stats. Identities = 89/285 (31%), Positives = 169/285 (59%), Gaps = 17/285 (5%) Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160 + G S F L + P ++FP+ ++ + L+ + L+ L+++T F+MA +++RYYLNG+ Sbjct: 1 VRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGM 60 Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 F I + L +VATDGHR+AV++ + A A+ IIVPRK V E+++++ + + V Sbjct: 61 LFEI--DGTTLRSVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVV 117 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 + + S + + + + +L+DG FP+Y+ V+P +K L +C LRQA R +I+S+ Sbjct: 118 LQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSN 177 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 + + V+++L+ ++ +T +NP+ +A E ++V + P++I FN Y+L++++ + Sbjct: 178 EKFRGVRVNLAGSEMRITANNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRC-- 235 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++V + +N+S I D DS A YV+MP+R+ Sbjct: 236 ---EKVQVSMSDANASALIENADDDS---------AMYVVMPIRL 268 >gi|289427477|ref|ZP_06429190.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165] gi|289159407|gb|EFD07598.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165] gi|313765025|gb|EFS36389.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA1] gi|313771065|gb|EFS37031.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL074PA1] gi|313792567|gb|EFS40653.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA1] gi|313803568|gb|EFS44750.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA2] gi|313806857|gb|EFS45355.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA2] gi|313811770|gb|EFS49484.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA1] gi|313814220|gb|EFS51934.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA1] gi|313815418|gb|EFS53132.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA1] gi|313817644|gb|EFS55358.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA2] gi|313821531|gb|EFS59245.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA1] gi|313824525|gb|EFS62239.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA2] gi|313826194|gb|EFS63908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA1] gi|313829190|gb|EFS66904.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA2] gi|313832304|gb|EFS70018.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL007PA1] gi|313832764|gb|EFS70478.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL056PA1] gi|313839623|gb|EFS77337.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL086PA1] gi|314916214|gb|EFS80045.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA4] gi|314917481|gb|EFS81312.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA1] gi|314921817|gb|EFS85648.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA3] gi|314926332|gb|EFS90163.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA3] gi|314930918|gb|EFS94749.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL067PA1] gi|314955286|gb|EFS99691.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA1] gi|314959159|gb|EFT03261.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA1] gi|314961664|gb|EFT05765.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA2] gi|314963872|gb|EFT07972.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA1] gi|314969082|gb|EFT13180.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA1] gi|314975199|gb|EFT19294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA1] gi|314977612|gb|EFT21707.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL045PA1] gi|314980256|gb|EFT24350.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA2] gi|314985202|gb|EFT29294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA1] gi|314987111|gb|EFT31203.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA2] gi|314990687|gb|EFT34778.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA3] gi|315078994|gb|EFT51006.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA2] gi|315081496|gb|EFT53472.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL078PA1] gi|315083081|gb|EFT55057.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA2] gi|315086614|gb|EFT58590.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA3] gi|315088016|gb|EFT59992.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA1] gi|315097161|gb|EFT69137.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL038PA1] gi|315099341|gb|EFT71317.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA2] gi|315102318|gb|EFT74294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA1] gi|315107497|gb|EFT79473.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA1] gi|315109865|gb|EFT81841.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA2] gi|327332501|gb|EGE74236.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA2] gi|327333674|gb|EGE75391.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA3] gi|327444468|gb|EGE91122.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA2] gi|327446722|gb|EGE93376.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA2] gi|327448836|gb|EGE95490.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA1] gi|327454253|gb|EGF00908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA3] gi|327456313|gb|EGF02968.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA2] gi|327457413|gb|EGF04068.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL092PA1] gi|328756011|gb|EGF69627.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA1] gi|328757975|gb|EGF71591.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL020PA1] gi|328758854|gb|EGF72470.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA2] gi|328759812|gb|EGF73403.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL099PA1] Length = 414 Score = 262 bits (670), Expect = 8e-68, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 174/401 (43%), Gaps = 35/401 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I +ER + E + A R + + T+P+ +L++A + + AS E + A V Sbjct: 30 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 89 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G VS LL DI R L + + ++++ G + F LQ+ P E+P Sbjct: 90 DEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 145 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + +SV V + A +E+ G+ IN E L L +ATD +R+ Sbjct: 146 PQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 202 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234 A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 203 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 261 Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ ++ Sbjct: 262 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 320 Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344 D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 321 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 374 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 375 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 412 >gi|171741733|ref|ZP_02917540.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC 27678] gi|283454961|ref|YP_003359525.1| DNA polymerase III, subunit beta [Bifidobacterium dentium Bd1] gi|171277347|gb|EDT45008.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC 27678] gi|283101595|gb|ADB08701.1| DNA polymerase III, beta subunit [Bifidobacterium dentium Bd1] Length = 374 Score = 262 bits (669), Expect = 8e-68, Method: Composition-based stats. Identities = 80/387 (20%), Positives = 164/387 (42%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + + R+I+ + P+ + L+A DG L++ A I I A Sbjct: 1 MKVEINSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEAGTALVLGKLLADITKSLPSEKTYLSTD----GSTMTITSGKSTFTMQLMPDNEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + A++ EE R L GI + K+ +TD R Sbjct: 117 LPVVPAKLGQVDSPTFM-QAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237 L+ + + + + + R A+ + + ++ + S + Sbjct: 174 LSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFENAGRVS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + ++ +L A+ RVS+++ R ++++ + +L + Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVA-ERNAPIRMAFAGQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YL+E + IS + V ++ ++ V Sbjct: 293 SAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMTTAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|15604284|ref|NP_220800.1| DNA polymerase III subunit beta [Rickettsia prowazekii str. Madrid E] gi|6225282|sp|Q9ZDB3|DPO3B_RICPR RecName: Full=DNA polymerase III subunit beta gi|3860976|emb|CAA14876.1| DNA POLYMERASE III, BETA CHAIN (dnaN) [Rickettsia prowazekii] gi|292572033|gb|ADE29948.1| DNA polymerase III beta chain [Rickettsia prowazekii Rp22] Length = 381 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 115/397 (28%), Positives = 206/397 (51%), Gaps = 31/397 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A IIE++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKTLMQSLGFARSIIEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G ITV+ L DIVRK D E T++ I + F L + P S FP+ Sbjct: 63 LNEGEITVATQTLSDIVRKFPDSELTLTEIE---ITQLEIKGQNCKFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + SF+++ + ++E T F+++ +E RY LNGI+ HI +++ A +TDG+RL Sbjct: 120 DSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKE--FFAASTDGYRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD---SSVKVSLSESRIHLNI-ESLSM 237 +++ + + +I K +I+P+K+ EIL+I+ +++ LS ++I E+ + Sbjct: 178 SISWITLEEKI-KNFGVILPQKSAEEILKIVKDPKNIHEDIEILLSSNKIKFICNENTIL 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N +++R++I++ + +AVKLSLS L + Sbjct: 237 LSKLIDGTFPDYSAFIPKSSVSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRKILEI 296 Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E + + + + I FN +YL +++ I SD V E+ F Sbjct: 297 SAVGEARGTAKEIITASQDKESFYEYNHDESLVIGFNPQYLEDVLKAIKSDIV---ELYF 353 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+++ V I+ +V+MP+++ Sbjct: 354 SDISASAPVLIKFPRNPKD---------IFVIMPVKV 381 >gi|148271180|ref|YP_001220741.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp. michiganensis NCPPB 382] gi|147829110|emb|CAN00007.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp. michiganensis NCPPB 382] Length = 383 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 171/390 (43%), Gaps = 20/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V R E + A +++ ++ T+P+ VL++A + L + + E+ I A Sbjct: 1 MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + VS LL DI +L + ++ +++ +S G ++F L S P E+P+ Sbjct: 61 IEEPGRVLVSGRLLADIANRLPNAPVRFTTED----SKITVSCGSAHFTLLSMPVEEYPT 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L + V + A + +++ + G+ + E L L +ATD +R Sbjct: 117 LPQISEQSGL-LPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYR 173 Query: 181 LAVAEVDIVAQIA----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNI 232 +AV E+D + + +VP + + EI + ++ V+++++ I + Sbjct: 174 VAVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHS-GTISVAITDTDDRQLIAFSA 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + +++ LI G FP + + P + D +N +L +A RV ++ R A++ + S Sbjct: 233 DRKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFSI 291 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D L + + +A ES++ + ++LL+ + + S+ V + Sbjct: 292 DGLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKTDNPN 351 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 V I + + D N Y+L P Sbjct: 352 KPGPVLITSQSSKDQAGAD---NYRYLLQP 378 >gi|314922679|gb|EFS86510.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL001PA1] gi|314965764|gb|EFT09863.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA2] gi|314982905|gb|EFT26997.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA3] gi|315091211|gb|EFT63187.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA4] gi|315094445|gb|EFT66421.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL060PA1] gi|315105165|gb|EFT77141.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA2] gi|327328940|gb|EGE70700.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL103PA1] Length = 414 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 90/401 (22%), Positives = 173/401 (43%), Gaps = 35/401 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I +ER + E + A R + + T+P+ +L++A + + AS E + A V Sbjct: 30 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 89 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G VS LL DI R L + + ++++ G + F LQ+ P E+P Sbjct: 90 DEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 145 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + +SV V + A +E+ G+ IN E L L +ATD +R+ Sbjct: 146 PHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 202 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234 A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 203 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 261 Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ ++ Sbjct: 262 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 320 Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344 D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 321 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 374 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 375 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 412 >gi|13398078|gb|AAK21708.1| DnaN [Buchnera aphidicola] Length = 368 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I L VATDG+ Sbjct: 118 NHNNFHHISEFYIHSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHALLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY + + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|219681400|ref|YP_002467785.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] gi|257471073|ref|ZP_05635072.1| DNA polymerase III beta chain [Buchnera aphidicola str. LSR1 (Acyrthosiphon pisum)] gi|219624243|gb|ACL30398.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A (Acyrthosiphon pisum)] Length = 366 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 207/382 (54%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + +++ L R++ + ++P+ +VL+ +G+L + + EIE+ I S Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVATIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G+ T+S L DI R + + I N +++I G+S + L + P FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S +LK ++E+ F+M +++RYYLNGI + D L AVATDG+ Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVRYYLNGILLE--KTDRSLYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + I SI++PRK V E+ R+L+ +KV + ++ I ++IE L + Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++P+Y++V+ + + + +N L+Q++ R +I+S + V++ + + + + Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + N+ Y + I N Y++EI+++I+S + + L+++N+S+ I Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + YV+M Sbjct: 350 EAE---------NDASILYVVM 362 >gi|13398095|gb|AAK21716.1| DnaN [Buchnera aphidicola] Length = 368 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 100/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I L VATDG+ Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY + + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|11320893|gb|AAG33942.1|AF197882_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 261 bits (668), Expect = 1e-67, Method: Composition-based stats. Identities = 98/383 (25%), Positives = 198/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R I + + P+ ++L+ + +L + + EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ITVS+ L DI R + + ++ +++I S + L++ P FP Sbjct: 61 KHYVSGNITVSSRKLLDICRHSLNSSNMNIEL---HANKIHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ + L VATDG+ Sbjct: 118 NHNNFHHIAEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEMIHNS--LYMVATDGY 175 Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + + I + IE L + Sbjct: 176 RLGMTHTRLTKTQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGTNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY ++ + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQCKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|13398101|gb|AAK21719.1| DnaN [Buchnera aphidicola] Length = 368 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I L VATDG+ Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHTILTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|11320897|gb|AAG33944.1|AF197884_1 DNA polymerase III beta subunit [Buchnera aphidicola] gi|13398063|gb|AAK21701.1| DnaN [Buchnera aphidicola] gi|13398065|gb|AAK21702.1| DnaN [Buchnera aphidicola] gi|13398067|gb|AAK21703.1| DnaN [Buchnera aphidicola] gi|13398069|gb|AAK21704.1| DnaN [Buchnera aphidicola] gi|13398072|gb|AAK21705.1| DnaN [Buchnera aphidicola] gi|13398074|gb|AAK21706.1| DnaN [Buchnera aphidicola] gi|13398076|gb|AAK21707.1| DnaN [Buchnera aphidicola] gi|13398080|gb|AAK21709.1| DnaN [Buchnera aphidicola] gi|13398082|gb|AAK21710.1| DnaN [Buchnera aphidicola] gi|13398086|gb|AAK21712.1| DnaN [Buchnera aphidicola] gi|13398090|gb|AAK21714.1| DnaN [Buchnera aphidicola] gi|13398093|gb|AAK21715.1| DnaN [Buchnera aphidicola] gi|13398097|gb|AAK21717.1| DnaN [Buchnera aphidicola] gi|13398099|gb|AAK21718.1| DnaN [Buchnera aphidicola] gi|13398103|gb|AAK21720.1| DnaN [Buchnera aphidicola] gi|13398105|gb|AAK21721.1| DnaN [Buchnera aphidicola] Length = 368 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I L VATDG+ Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|11320917|gb|AAG33954.1|AF197894_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 261 bits (667), Expect = 1e-67, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 210/382 (54%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + ++ L R + + NT P+ ++L+ +G+L + A+ EIE+ I S Sbjct: 1 MKFNIKNNILIHNLQKINRFVTKNNTFPILENILISIKNGILSLTATNLEIELISNITLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS T+S+ L DI R + +S + G +++I S + L + + FP Sbjct: 61 THYIPGSTTISSRKLLDICR---NSLNLSDIQIQLNGNKIHIISDKSKYILTTLSSNNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + K ++ F + S++++ ++E+THF+M +++RYYLNG+ ++ L + +ATDG+ Sbjct: 118 NHKNFHHIAEFFINSNIIREMIEKTHFSMGKQDVRYYLNGMLLEKIDDSLNM--IATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + + SII+ RK + E+ ++L+ + +K+ +++S I + IE + Sbjct: 176 RLGISKTILQEKKISSFSIIITRKGITELYKLLNIPNQKIKILIAKSHIRIYIEQFIFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FPNY++V+ + + +N L+Q++ RVSI+S + V++ + + + Sbjct: 236 QLIEGQFPNYESVLFQQKNNGIILNSKLLKQSLMRVSILSHEKFCGVEIYIRDNTFKVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + ++ Y ++I N Y+L+I+++I+S + ++ L++SN+S+ I Sbjct: 296 DNQEEEIAEDMFDINYIGPVIEISINVYYILDILNSINS-----ENILIFLNNSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + + N YV+M Sbjct: 351 KAE---------NDTLTTYVVM 363 >gi|13398084|gb|AAK21711.1| DnaN [Buchnera aphidicola] Length = 368 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + L R I + + P+ ++L+ D +L + + EIE+ I Sbjct: 1 MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + I+ +++I S + L++ P FP Sbjct: 61 KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S++LK ++E+THF+M +++RYYLNG+ I L VATDG+ Sbjct: 118 NHNNFHHISEFYIDSNILKKMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY + + + +NC L+Q++ R SI++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++ISS + ++ L++SN+S+ Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + + Y++M Sbjct: 351 IEAEHD---------ASTIYIVM 364 >gi|306823995|ref|ZP_07457369.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium dentium ATCC 27679] gi|309801968|ref|ZP_07696082.1| DNA polymerase III, beta subunit [Bifidobacterium dentium JCVIHMP022] gi|304552993|gb|EFM40906.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium dentium ATCC 27679] gi|308221416|gb|EFO77714.1| DNA polymerase III, beta subunit [Bifidobacterium dentium JCVIHMP022] Length = 374 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 165/387 (42%), Gaps = 19/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ + + + + R+I+ + P+ V L+A DG+L++ A I I A Sbjct: 1 MKVEINSQALADAVAWTTRVIDARPATPILAGVRLEAIDGILQLSAFNYAISARHHIEAG 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D G+ V LL DI + L G+ + I+ G S F +Q P++E+P Sbjct: 61 IDEAGTALVLGKLLADITKSLPSEKTYLSTD----GSTMTITSGKSTFTMQLMPDNEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + A++ EE R L GI + K+ +TD R Sbjct: 117 LPVVPAKLGQVDSPTFM-QAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237 L+ + + + + + R A+ + + ++ + S + Sbjct: 174 LSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFENAGRIS 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LIDGEFP + ++ +L A+ RVS+++ R ++++ + +L + Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVA-ERNAPIRMAFAGQELTL 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D +A E +++ + + + FN YL+E + IS + V ++ ++ V Sbjct: 293 SAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMTTAVKPV 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 G+ + + D ++ Y+L+PMR Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371 >gi|307297361|ref|ZP_07577167.1| DNA polymerase III, beta subunit [Thermotogales bacterium mesG1.Ag.4.2] gi|306916621|gb|EFN47003.1| DNA polymerase III, beta subunit [Thermotogales bacterium mesG1.Ag.4.2] Length = 367 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 97/388 (25%), Positives = 176/388 (45%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAI-P 58 MK RS+IL L + K+ P+ + +D ++++A+ E IT + P Sbjct: 1 MKFVAARSEILTRLESVSGAVAPKSVKPILSGIYFSMKDDSTVKLQATDLETAITTELRP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D + A L+ +IVR L +G + ++ T V I G + F L + EF Sbjct: 61 KHIDGRCDFVIDARLVLEIVRNLPEGEVVFETED----TNVIIREGSARFTLPTMDPEEF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + F ++ S ++ +++R F A +E LN +++ + L+L VA DG Sbjct: 117 PIVEPTSGGLEFTVSVSSIELMIDRVIFCAARDEFMRNLNSVYWEFEDGYLRL--VAADG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237 R+A++E I I ++ K++ ++ L + S + KV+ SR+ + + Sbjct: 175 FRMALSEERIDLSIDD--HFLLTLKSMKDLQNSLKAAMSDLLKVTYDGSRVQFLFDGTEI 232 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++D EFP+Y+ V+P S L ++ AV R SI + + +VK + ++ + Sbjct: 233 VTKVVDAEFPDYKKVLPKSFKARLVLSTEVFSDAVRRASIAARLGSDSVKFEIDDEQFKI 292 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +PD G++IE ++ + I FN ++L E I S D V SNS + Sbjct: 293 VARSPDHGESIEILDANKEGDNIVIAFNPRFLSESAKKIDS-----DTVELNFVDSNSPL 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D YV+MP+R+ Sbjct: 348 QMNPVD---------VQGYTYVIMPIRL 366 >gi|308273671|emb|CBX30273.1| hypothetical protein N47_D30820 [uncultured Desulfobacterium sp.] Length = 364 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 96/379 (25%), Positives = 190/379 (50%), Gaps = 22/379 (5%) Query: 12 ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71 ++L I RK + ++ VL++A D + I ++ E TG A V+ G+I ++A Sbjct: 3 DVLSKLQTIAGRKTNLAITTAVLIRATDSGINISSTDMETGFTGFYSAEVEREGAIAINA 62 Query: 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131 +L++I++ + +N +N + + + +FP + E + F+ Sbjct: 63 KMLFEIIKDFPNEEIYINEIDNLWIEILN--QNNVEYKMAGMNPDDFPGIPDVENITYFD 120 Query: 132 LASSVLKNLVERTHFAMA-TEEIRYYLNGIFFH--INEEDLKLCAVATDGHRLAVAEVDI 188 + +SV K+++E+T F TEE R ++NG++ + + KL V+TDG RLA + + Sbjct: 121 IKASVFKDMIEKTIFITGITEEKRPHINGVYLEKILEDGINKLRLVSTDGSRLAKVDCEY 180 Query: 189 VA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 ++++ P II+ +K + ++ + L + ++K+ + S L E+ ++ +RL++G F Sbjct: 181 ENALELSEEPGIIISKKGLSDLNKFL-DTNKNIKIGYNNSNFVLKKENETVIIRLLEGNF 239 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P Y+ +I + + L + R+SI +S + V + +KL ++ NPD+G+ Sbjct: 240 PEYKYIIDKKEAFSITIERQKLLMMLKRMSIFTSDNFKGVIFNFDKEKLLVSSTNPDLGE 299 Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 + E M + Y+ P++I FN +Y ++ ++ I DD V+ L + S + + Sbjct: 300 SKEEMIINYDFDPLEIAFNVRYFIDTLNVIK-----DDNVIIMLINEKSPCLVEAE---- 350 Query: 367 KNNKDNKVNAFYVLMPMRI 385 N N V+MPMRI Sbjct: 351 -----NNKNFLSVIMPMRI 364 >gi|91205471|ref|YP_537826.1| DNA polymerase III subunit beta [Rickettsia bellii RML369-C] gi|122990918|sp|Q1RIS7|DPO3B_RICBR RecName: Full=DNA polymerase III subunit beta gi|91069015|gb|ABE04737.1| DNA polymerase III beta chain [Rickettsia bellii RML369-C] Length = 379 Score = 260 bits (666), Expect = 2e-67, Method: Composition-based stats. Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A ++E++N I ++ L A DGLLE+ ++ ++ ++ I V Sbjct: 3 KVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKIGVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G +TVS L DIV+KL D + T + I+ + F L + P FP Sbjct: 63 VSEGELTVSTKTLNDIVKKLPDSEL---TLTDLGTTGLEITGKNCRFNLFTLPVESFPVM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNGI+ H+ D + A +TDGHRL Sbjct: 120 DNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVK--DSEFYAASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +V+ V + +I +I+P+K+ EIL+I+ ++ +++ LS ++I E++ M Sbjct: 178 SVSSVVLAEKIED-FGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y + IP ++ +L +N ++R++I++ + +AVKLSLS + L + Sbjct: 237 LSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEI 296 Query: 298 TVDNPDMGKAIESMN--------VYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N Y+ +DI FN +YL +++ I SD V Sbjct: 297 SAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S ++ V I+ + +V+MP+++ Sbjct: 352 YFSSVSAPVLIKFPESPKD---------IFVVMPVKV 379 >gi|15638997|ref|NP_218443.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp. pallidum str. Nichols] gi|189025238|ref|YP_001933010.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp. pallidum SS14] gi|4033379|sp|O83048|DPO3B_TREPA RecName: Full=DNA polymerase III subunit beta gi|3322257|gb|AAC65000.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp. pallidum str. Nichols] gi|189017813|gb|ACD70431.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp. pallidum SS14] gi|291059422|gb|ADD72157.1| DNA polymerase III, beta subunit [Treponema pallidum subsp. pallidum str. Chicago] Length = 371 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI E+ L+ + A +I K + +VLL A LL I+A+ ++ +IP + Sbjct: 1 MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIPVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ TV L ++V L E +L + +F L++ FP Sbjct: 61 VLAEGTTTVFCDKLVNVVSALPTKEIELTLCEEQLVITPP--NKKISFQLRTLSHESFPC 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E S + +S L+N++ T FA++ + R+++NG+ H++ + + V+TDG R Sbjct: 119 FPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGV--HVDFQYGNIICVSTDGKR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA E + +IVP K +G + R L+ + SV + ++ ++ S Sbjct: 177 LAYIEKKGESSPQSFSGVIVPTKILGIVNRKLT-PEGSVTLCITSQHVYFFFGGYKFSSV 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FPNY+ VIP ++ V L +A+ RVS++ + + +++ L ++ Sbjct: 236 LIEGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSSK 295 Query: 301 N----PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++G A E + Y I NY YL E + +S EV + Sbjct: 296 AHTQENEIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSK-----EVQVEFTDPAKA 350 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +R + F+++MPM+ Sbjct: 351 LTLRAV---------PNTDCFHIIMPMQ 369 >gi|311087504|gb|ADP67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF98 (Acyrthosiphon pisum)] Length = 366 Score = 260 bits (665), Expect = 2e-67, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 207/382 (54%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + +++ L R++ + ++P+ +VL+ +G+L + + EIE+ I S Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G+ T+S L DI R + + I N +++I G+S + L + P FP Sbjct: 61 TEHISGTTTISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S +LK ++E+ F+M +++RYYLNGI + D L AVATDG+ Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVRYYLNGILLE--KTDRSLYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + I SI++PRK V E+ R+L+ +KV + ++ I ++IE L + Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++P+Y++V+ + + + +N L+Q++ R +I+S + V++ + + + + Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + N+ Y + I N Y++EI+++I+S + + L+++N+S+ I Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + YV+M Sbjct: 350 EAE---------NDASILYVVM 362 >gi|291513941|emb|CBK63151.1| DNA polymerase III, beta subunit [Alistipes shahii WAL 8301] Length = 374 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 185/388 (47%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +V S +L LL ++I KNT+P+ + LL+ N L++ S E + G I Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLLELNGNTLQVTTSDLETTLVGQIEVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 SV+ G+I A L+ D +++ + + N+ E+ I+ + + +P Sbjct: 61 SVESEGTIAAPAKLMLDSLKEFPELP--LTIEVNDKNWEIKINWKSGSLSIPGASAVSYP 118 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + L L N + +T FA A +E+R +NGI+ ++ + L V TD Sbjct: 119 AVPQLNAEKKELRLDVDTLVNGINKTIFATADDELRPVMNGIYINLAPDALTF--VGTDA 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L E + ++ S I+P+K + +L +D +++++ ++S ++ Sbjct: 177 HKLVKYEAETENEV--TASFILPKKPANLLKSVLLKEDDAIEMAFDSKNALFKLKSHTLV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY VIP +N ++ V+ L + RV++ S+ +++ ++ +++ +T Sbjct: 235 CRLIEGNYPNYNAVIPSNNPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRITLT 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+++ Y+ P+ I F +L+EI+ N+ + VV + L S + Sbjct: 295 AQDIDFSVSANETISCSYDGQPISIGFKSTFLVEILSNMDTPTVVVE-----LADSTRAG 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + + +LMPM I Sbjct: 350 VFKPVYDDKQPSA-----TLMLLMPMMI 372 >gi|15616641|ref|NP_239853.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] gi|11132241|sp|P57127|DPO3B_BUCAI RecName: Full=DNA polymerase III subunit beta gi|25288588|pir||C84931 DNA-directed DNA polymerase (EC 2.7.7.7) beta chain [imported] - Buchnera sp. (strain APS) gi|10038704|dbj|BAB12739.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS (Acyrthosiphon pisum)] Length = 366 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 104/382 (27%), Positives = 208/382 (54%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + +++ L R++ + ++P+ +VL+ +G+L + + EIE+ I S Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G+ T+S L DI R + + I N +++I G+S + L + P FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S +LK ++E+ F+MA +++RYYLNGI + D L AVATDG+ Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMAKQDVRYYLNGILLE--KTDRSLYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + I SI++PRK V E+ R+L+ +KV + ++ I ++IE L + Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++P+Y++V+ + + + +N L+Q++ R +I+S + V++ + + + + Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + N+ Y + I N Y++EI+++I+S + + L+++N+S+ I Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + YV+M Sbjct: 350 EAE---------NDASILYVVM 362 >gi|228958921|ref|ZP_04120624.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pakistani str. T13001] gi|228800760|gb|EEM47674.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pakistani str. T13001] Length = 376 Score = 260 bits (665), Expect = 3e-67, Method: Composition-based stats. Identities = 88/396 (22%), Positives = 175/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L + ++ KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTEVHIELSNN--KLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E + + + + IVP + E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATINELLKLMNSNSEFVYIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + V+ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +G+ E+ ++ E ++I F+ ++++ + I ++ + Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGHFMVDALRAIK-----EETITL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374 >gi|297570615|ref|YP_003696389.1| DNA polymerase III subunit beta [Arcanobacterium haemolyticum DSM 20595] gi|296930962|gb|ADH91770.1| DNA polymerase III, beta subunit [Arcanobacterium haemolyticum DSM 20595] Length = 372 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 170/386 (44%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59 MKI VE E + R I + IPV + +QA+ +G++ + + +I I A Sbjct: 1 MKIIVEHDVFTEAVTWVARTIPNRPAIPVLAGLKIQASQNGIVSLGSRDSDISSHVDIEA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + V+ LL DI R L I + GT+++I G S+F +++ ++ Sbjct: 61 DVLNAGDVLVNGRLLADICRALP-RKPIELTLD---GTKLDIECGSSHFSMKTMASEDYT 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + V + S + + A + ++ L + IN + + L +ATD + Sbjct: 117 DGTDMPPVIG-TVDGSAWLEAISQVTIAASNDDTLPLLVSVCLEINGDSIAL--MATDRY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLAV +++ + I+ R + + +I + L S +++SLS+S I + Sbjct: 174 RLAVRDLEWTPTDTTISKRILVRASRLLDIAKALGSA-GPIEISLSDSLIGFAAGGKQNT 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 V+LIDGE+P ++ P + + +N ++ A+ R ++ + AV+LS + ++ + Sbjct: 233 VQLIDGEYPQVLSLFPAESAGYMVMNRADMLDAIKRSRLVV-EKNAAVRLSFTEGEVTIE 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A E++ + + FN +L E ++ ++V + Sbjct: 292 AGQGDQAQASEALPADVVGEDVKMAFNPIFLQEGFSAMNC-----EKVRLSVTHPTKPAV 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + ++ + +LMP+R Sbjct: 347 MTAE-----KDGESVEDFRLLLMPVR 367 >gi|11320901|gb|AAG33946.1|AF197886_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 367 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 202/382 (52%), Gaps = 20/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++ L R+I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRLITKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ TVS+ L DI R + + ++ +++I S + L++ P FP Sbjct: 61 KHYISGNTTVSSRKLLDICRHSLNTSNMNIELN---ANKIHIISNTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S+VLK ++E+THF+M +++RYYLNG+ + L VATDG+ Sbjct: 118 NHNHFHHISEFYIDSNVLKEMIEKTHFSMGKQDVRYYLNGMLLKMINNS--LYMVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL++ + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLSITHTILKKQQIESFSIIMTRKGIIELYKLLNISKQLIKILIGKNSIRIYIEQLVFTA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G FPNY ++ + + +NCT L+Q++ R +I++ + V++ + +++ + Sbjct: 236 QLIEGIFPNYDSLFLNKTNNGIILNCTLLKQSLLRTAILTHEKFCGVEIHIKNNQFTVLS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A ++ N+ Y + I N Y+L+++++ISS ++ L++SN+S+ I Sbjct: 296 DNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISSQ-----NIILFLNNSNNSIQI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + Y++M Sbjct: 351 EAE---------NDTSTIYIVM 363 >gi|219681956|ref|YP_002468340.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|219621689|gb|ACL29845.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7 (Acyrthosiphon pisum)] gi|311085761|gb|ADP65843.1| DNA polymerase III beta chain [Buchnera aphidicola str. LL01 (Acyrthosiphon pisum)] gi|311086338|gb|ADP66419.1| DNA polymerase III beta chain [Buchnera aphidicola str. TLW03 (Acyrthosiphon pisum)] gi|311086913|gb|ADP66993.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF99 (Acyrthosiphon pisum)] Length = 366 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 103/382 (26%), Positives = 207/382 (54%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + +++ L R++ + ++P+ +VL+ +G+L + + EIE+ I S Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G+ T+S L DI R + + I N +++I G+S + L + P FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S +LK ++E+ F+M +++RYYLNGI + D L AVATDG+ Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVRYYLNGILLE--KTDRSLYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + I SI++PRK V E+ R+L+ +KV + ++ I ++IE L + Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++P+Y++V+ + + + +N L+Q++ R +I+S + V++ + + + + Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + N+ Y + I N Y++EI+++I+S + + L+++N+S+ I Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + YV+M Sbjct: 350 EAE---------NDASILYVVM 362 >gi|229161568|ref|ZP_04289548.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] gi|228621813|gb|EEK78659.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] Length = 376 Score = 260 bits (664), Expect = 3e-67, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 177/396 (44%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP+S Sbjct: 1 MEFIVNHKHFTQALSEVSKAISTKALIPILSGIKIIADQSGITLIASNSNIFIEKFIPSS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +D G+I V A +I++K+ I E + I + L Sbjct: 61 IDDEQITTILKTGTIVVPAKYFIEIIKKMPGDIIIKSKNEQT----ITIQSEEITLNLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F E+P+ + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 117 FSADEYPNVPSIDNHVEIQMETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + IVP V E+L++++S V + LSES I Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATVNELLKLINSNLEIVFIYLSESHIIFTF 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291 + ++ RLI+G++PN N+IP + ++ + Q VDR S+++S V L + Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVIHMDRKKILQGVDRSSLLASEWANNNVNLEII 292 Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + ++ + +GK E+ ++ E ++I F+ +++++ + I ++ V+ Sbjct: 293 NESTIKVSSNASQIGKISETQQIDTIRGEKQLNISFDGRFMVDALRAIK-----EETVIL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I ++ + A +++ P+R Sbjct: 348 SFGGSMRPILIEAGEQST---------AVHLISPVR 374 >gi|325478849|gb|EGC81959.1| DNA polymerase III, beta subunit [Anaerococcus prevotii ACS-065-V-Col13] Length = 370 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 186/387 (48%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + ++++ + A + + + I + + + + L + A EI I ++ A Sbjct: 1 MKFRINQQELIDAINIASKAVSKSTNIQIHELIYFECKENSLYLMAFDGEISIKTSVDAI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + V A L+ +IVRKL + KE +++I SNF L +F E Sbjct: 61 VDEEGEMAVKASLISNIVRKLPNDLVTISNKEG----KISIRCSSSNFNLIAFDYFEKND 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E+A+ VLK + +T FA +E + L GI F + E L + VA DG+R Sbjct: 117 I-EIPETTPIEIANDVLKRSISQTEFATTLDETKLALTGILFELKEGSLNM--VALDGYR 173 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ +V + + I+P++++ E RI++ +D+ K+ +++ + E+ +M Sbjct: 174 VALKKVKLDYPTDYEDSEYIIPKRSLIEWSRIIT-EDTKTKLYKNDNDLIFVSENTTMQC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 ++ID F +Y+N+I ++ + ++ L ++DR +++ R +K+ ++ + + Sbjct: 233 KVIDKNFIDYRNIINDISETTIILDKRELINSLDRAQVLADPGRANLIKIEVADSSMVIK 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E ++V +DI FN +Y+ E + S + + SS + Sbjct: 293 S-NSEIGDVKEVIDVEQKGENLDIAFNARYMQEGVKACDSTK-----IKLNFKSSLNPCL 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + N+ + Y+++P+R+ Sbjct: 347 IYPE-----NSSYENEDFTYLVLPVRL 368 >gi|295129531|ref|YP_003580194.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137] gi|291376118|gb|ADD99972.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137] Length = 414 Score = 259 bits (663), Expect = 4e-67, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 173/401 (43%), Gaps = 35/401 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I +ER + E + A R + + T+P+ +L++A + + AS E + A V Sbjct: 30 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 89 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G VS LL DI L + + ++++ G + F LQ+ P E+P Sbjct: 90 DEPGESLVSGKLLADIACSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 145 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + +SV V + A +E+ G+ IN E L L +ATD +R+ Sbjct: 146 PQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 202 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234 A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 203 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 261 Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ ++ Sbjct: 262 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 320 Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344 D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 321 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 374 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 375 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 412 >gi|327334559|gb|EGE76270.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL097PA1] Length = 410 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 176/401 (43%), Gaps = 35/401 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I +ER + E + A R + + T+P+ +L++A D + + AS E +PA V Sbjct: 26 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAQDDSVVMSASDNETSAQITLPAQV 85 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G VS LL +I R L + + ++++ G + F LQ+ P E+P Sbjct: 86 DKPGESLVSGKLLAEIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 141 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + ++V V + A +E+ G+ IN E L L +ATD +R+ Sbjct: 142 PQMP-AATGTVDANVFSRAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRYRM 198 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234 A+ EV + +VP K + E R ++S + V V+LS E + + Sbjct: 199 ALKEVTWNPSATDAEATALVPAKVINETARSMTSGE-HVTVNLSSGDSGEGLVGFEGDGA 257 Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ ++ Sbjct: 258 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVHRVSLVA-ERNTPLRMVIN 316 Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344 D + ++ D +A E++ + + I FN +YL + + + + Sbjct: 317 DDSIALSAATGDQAQASEAIEAVVTNHVDGES-TITAAGFNPQYLSDALGALDT-----P 370 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 371 YVHFSFTAPGKPCLVTGLND---LDGKPETDYRHVIMLMRL 408 >gi|116490128|ref|YP_809649.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1] gi|290889522|ref|ZP_06552612.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429] gi|116090853|gb|ABJ56007.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1] gi|290480720|gb|EFD89354.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429] Length = 374 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 179/393 (45%), Gaps = 30/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V+R+++ L R I K IP+ + + ++ + + S EI I + A Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I +A+ +I++ L + G+++ I G S+F + Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEISTE----GSQIAIVGGSSDFTVAGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + + + SS L +++ T A++ ++ R L GI F I + +K A Sbjct: 117 SADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V+TD HRL+ I ++VP KA+ E+ +L + D ++ + S++ +++ Sbjct: 175 VSTDSHRLSQRITKIGNDS--QADVVVPSKALIELRALLENID-NLNLQFDRSQLLVDLG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV-KLSLSS 292 + RL++G++P +IP + ++ L ++DR S+++ V + S+S Sbjct: 232 ETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQ 291 Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 DKL ++ ++GK +E +++ + + I FN ++ + + +I + ++ F Sbjct: 292 DKLVLSTAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSIG-----ESKLDFSFT 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ IR N + N ++ P+R Sbjct: 347 TNLRPFVIRP-------NGASDNNKVQLITPVR 372 >gi|328905787|gb|EGG25563.1| DNA polymerase III subunit beta [Propionibacterium sp. P08] Length = 386 Score = 259 bits (662), Expect = 6e-67, Method: Composition-based stats. Identities = 90/402 (22%), Positives = 175/402 (43%), Gaps = 35/402 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I +ER + E + A R + + T+P+ + ++A D + + AS E + A Sbjct: 1 MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G VS LL DI R L + ++++ G + F LQ+ P E+P Sbjct: 61 VDEPGEALVSGKLLADIARSLPNKPVRITTDP----AKMDLVCGSARFTLQALPVDEYPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + +S+ V + A +E+ G+ IN E L L +ATD +R Sbjct: 117 LPQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234 +A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 174 MALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDG 232 Query: 235 LS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ + Sbjct: 233 ANGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVI 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVD 343 + D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 292 NDDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT----- 345 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 346 PYVHFSFTAPGKPCLVTGLND---LDGKPETDYRHVIMLMRL 384 >gi|229085761|ref|ZP_04217989.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44] gi|228697560|gb|EEL50317.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44] Length = 376 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 87/396 (21%), Positives = 171/396 (43%), Gaps = 34/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + + + + + KN P+ + L A L + S +I I IP Sbjct: 1 MEFIINNECFNKAISEVSKAVSLKNPFPILTGIKLIAEKNCLILVGSNSDIVIEKIIPLM 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI +SA L +IV+KL I V I + L Sbjct: 61 INDVKVLEVYKTGSIVISAKYLSEIVKKLPHDIHIKV----NGKQLVTIQSDEIVINLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 F E+PS + + ++ S L + +T FA++ E R L G+ E +L Sbjct: 117 FNTEEYPSLPQIDEATYTKIPSIELIEAINQTVFAVSKSESRPVLTGVNMSFKEN--QLS 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 VAT+ HRLA+ E+ I + + VP ++ E+++++ ++ + + +++S I Sbjct: 175 CVATNSHRLALRELAIETNVNGSFN--VPGASLNELIKLIKNEIGEIHIYMTDSYIVFKS 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291 +++S+ RLI+G +PN ++P + + ++ L + +DR + ++ R V L + Sbjct: 233 DTISLFSRLIEGNYPNISGLLPKDSKTIITLDTIQLLKGIDRACLFANEWRNNKVNLEIK 292 Query: 292 SD-KLCMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 K+ + ++ ++G+ E+ N+ E + I + +L++ + I ++E+ Sbjct: 293 DGTKIRIFSNSSELGEIEETQNIKMISGEKELSISLDGSFLIDALKVIK-----EEEIRL 347 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 D S V I D S +++ P+R Sbjct: 348 SFDGSMRPVLIEPVDNSS---------YRHLISPVR 374 >gi|217077436|ref|YP_002335154.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B] gi|217037291|gb|ACJ75813.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B] Length = 367 Score = 259 bits (661), Expect = 7e-67, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 186/386 (48%), Gaps = 25/386 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 K+ ++RS++ + + A + + K P+ +L + D L I ++ + + + Sbjct: 3 KLAIQRSELEKKISVAAQAVGSKTVDPILQCLLFKVEDNSLNIYSTDMQTFVVSKLNVPE 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FP 119 V+ G V A LL +IV+ + + I N ++NI G S+F + ++ E E FP Sbjct: 63 VEGSGQFAVDAKLLEEIVKNVDNDQIIL----NYDNGKLNIKSGKSSFNIATYSEPEKFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + E FE+ +S+L+ +++R F +TE LNG+++ + + L+L VA+DG+ Sbjct: 119 SIELENTGIKFEIETSILQEMIDRVIFCASTESAMRALNGVYWELKDNYLRL--VASDGY 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMS 238 RLA+ E I I+ K++ E+ ++ D V ++ ++ +N +++ Sbjct: 177 RLALVEQKITVNSD--IDFILSLKSMKELENLIKETDEPVLTINFDHKKLAVNAGDVTVI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +R+++ FP+Y+ V+P + + N +++ R I++ V+L D L ++ Sbjct: 235 MRVVEEVFPDYKRVLPKAFKSRIVFNKDQFLESLKRTMIIAKRGTDKVQLKALDDTLELS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +P+ G+ IE + + + I FN ++L E + I ++EVVF S + Sbjct: 295 SQSPEYGEVIEEIPIEKEGEDITINFNPRFLNEAVKKIE-----EEEVVFNFVDELSPMQ 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I K N Y+++P+R Sbjct: 350 INSK---------NVGEYLYIVLPVR 366 >gi|317509428|ref|ZP_07967046.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] gi|316252257|gb|EFV11709.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974] Length = 397 Score = 259 bits (661), Expect = 8e-67, Method: Composition-based stats. Identities = 91/401 (22%), Positives = 169/401 (42%), Gaps = 31/401 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASV 61 V R + + R + + +P+ +LL A++ G L + + ++ + A V Sbjct: 8 FEVPRDLFADSVSWVTRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQV 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + VS LL DI + L + K G++V++ G + F L + P EFPS Sbjct: 68 SGPGRVLVSGRLLADIAKALPSPS----VKIVAEGSKVHVRSGSAKFTLPTMPVDEFPSL 123 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E A + + + A + ++ L G+ ++L+L ATD RL Sbjct: 124 AEHPAPIGVAAAKELFA-AISQVGVAASRDDTLPALTGLRLVFTGQELEL--AATDRFRL 180 Query: 182 AVAEVDIVAQI--AKMPSIIVPRKAVGEILRI-LSSKDSSVKVSLS-----ESRIHLNIE 233 +V ++ + + + +VP + E R L S D+ V+ +L S + + Sbjct: 181 SVRKLAWEGKDFADEPVTALVPAAVLSEFARTPLPSDDTPVEFALDLGSGSPSLLGVQAG 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 ++ RL+D + P+ +IP RV+ L +AV RVS++S+ R Q ++L Sbjct: 241 PFRITTRLLDAQLPDVSQLIPKRYTAVARVDLAPLVEAVRRVSLVSARRSQ-IRLDFESS 299 Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ + G A E + V + + + FN YLL+ + + ++ F Sbjct: 300 GEDSVLRLSAGGEEAGFAEEELPVRHWGESISVVFNPGYLLDGLSTFRA-----EQAQFG 354 Query: 350 LDSSNSSVFIRGKDKD-----SKNNKDNKVNAFYVLMPMRI 385 N +V + D ++ + YVLMP+R+ Sbjct: 355 FTGQNRAVALVSGDGAEPEAIAEGYTAGSSDQVYVLMPVRL 395 >gi|229826863|ref|ZP_04452932.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC 49176] gi|229788481|gb|EEP24595.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC 49176] Length = 370 Score = 258 bits (660), Expect = 9e-67, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 182/385 (47%), Gaps = 24/385 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + +SD+++ + + I K T+P+ ++++ + + + A+ E+ I + Sbjct: 1 MLIKINQSDLIKSINIVIKAISTKTTLPILECIVIKTMENSIRLIANDMELGIETILSGE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSI +++ L +IVRKL + +N + I G S F + EFP Sbjct: 61 IIKEGSIALNSRLFSEIVRKLPNNLVEINTDDN---YKATIKCGKSVFTISGQSIEEFPV 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + S L+ LK ++ +T F+++ E + G IN +L++ +A DGHR Sbjct: 118 LPQIEKIKSITLSQFSLKEMIRQTIFSISNNENMKVMTGELIEINNNNLRI--IALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + + ++ VP K + EI +ILSS+ V + S I + +++ Sbjct: 176 ISIRKIALKGEHENIKAV-VPGKTLSEISKILSSEIADEVTIYFSNKHIVFEFSNTTVNS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDKLCMT 298 RLIDGEF N +I + ++ +N L + +D ++ + V L+++ + + ++ Sbjct: 235 RLIDGEFYNVDQMISSDYETKININRRELLENMDSALPFITEKEKKPVILNITENNMNLS 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + +G M + + I FN +++ + V D+ + L +S + F Sbjct: 295 IKTT-VGNMNTDMELVKEGKDILIGFNPVLIMDALKV-----VEDENIDIYLFNSKAPCF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I+ K++ + Y+++P+ Sbjct: 349 IKNKEE----------SYLYIILPV 363 >gi|298345814|ref|YP_003718501.1| DNA polymerase III subunit beta [Mobiluncus curtisii ATCC 43063] gi|315654388|ref|ZP_07907296.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 51333] gi|298235875|gb|ADI67007.1| DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 43063] gi|315491423|gb|EFU81040.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 51333] Length = 380 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 156/391 (39%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ + R + E + + R I + + V V ++A + +E + E+ + A Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G V LL + R L A + F + ++I+ G L E+P Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKFATED--NYLHITCGSFKQKLIMMHSEEYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ ++ + + + A + +E L GI + + KL +ATD + Sbjct: 119 PLPQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLATDRY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234 R+A+ E+ ++V K + + + +++ V+V++ + I L Sbjct: 176 RMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATA-GDVEVAVGSANNPASLIGLAANG 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 + ++ DG +P+ + + P + V + RV+I+SS Q + L +S Sbjct: 235 RVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSG 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L N A +++ N + + FN + LLE + I + Sbjct: 295 QLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAID-----EPYARLSFKDE 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ ++ ++ + Y++MP+R Sbjct: 350 AKPVVITGQKEE---TGEDNLTFRYLIMPIR 377 >gi|313835168|gb|EFS72882.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA2] gi|314929144|gb|EFS92975.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL044PA1] gi|314970907|gb|EFT15005.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA3] Length = 410 Score = 258 bits (660), Expect = 1e-66, Method: Composition-based stats. Identities = 89/401 (22%), Positives = 174/401 (43%), Gaps = 35/401 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I +ER + E + A R + + T+P+ + ++A D + + AS E + A V Sbjct: 26 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQV 85 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D G VS LL DI R L + ++++ G + F LQ+ P E+P Sbjct: 86 DEPGEALVSGKLLADIARSLPNKPVRITTDP----AKMDLVCGSARFTLQALPVDEYPDL 141 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + +S+ V + A +E+ G+ IN E L L +ATD +R+ Sbjct: 142 PQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRYRM 198 Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESL 235 A+ E+ + +VP K + E R ++S + V ++LS E + + Sbjct: 199 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 257 Query: 236 S----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + M+ RL+ GEFP ++++ + +R L +V RVS+++ R +++ ++ Sbjct: 258 NGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 316 Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344 D + ++ D +A E++ + + P I FN YL + + + + Sbjct: 317 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 370 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V F + + G + + + + +V+M MR+ Sbjct: 371 YVHFSFTAPGKPCLVTGLND---LDGKPETDYRHVIMLMRL 408 >gi|118587494|ref|ZP_01544919.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163] gi|118432144|gb|EAV38885.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163] Length = 374 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 178/393 (45%), Gaps = 30/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V+R+++ L R I K IP+ + + ++ + + S EI I + A Sbjct: 1 MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ G I +A+ +I++ L + G+++ I G S+F + Sbjct: 61 KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEISTE----GSQIAIVGGSSDFTVAGQ 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + + + SS L +++ T A++ ++ R L GI F I + +K A Sbjct: 117 SADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK--A 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 V+TD HRL+ I ++VP KA+ E+ +L + D ++ + S++ +++ Sbjct: 175 VSTDSHRLSQRITKIGNDS--QADVVVPSKALIELRALLENID-NLNLQFDRSQLLVDLG 231 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV-KLSLSS 292 + RL++G++P +IP + ++ L ++DR S+++ V + S+S Sbjct: 232 ETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQ 291 Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 DKL ++ ++GK +E + + + + I FN ++ + + +I + ++ F Sbjct: 292 DKLVLSTAQSEVGKVLEELLIDNFKGEDLKISFNPDFVRDALSSIG-----ESKLDFSFT 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ IR N + N ++ P+R Sbjct: 347 TNLRPFVIRP-------NGASDNNKVQLITPVR 372 >gi|170780464|ref|YP_001708796.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp. sepedonicus] gi|169155032|emb|CAQ00128.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp. sepedonicus] Length = 396 Score = 258 bits (659), Expect = 1e-66, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 170/389 (43%), Gaps = 20/389 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K V R E + A +++ ++ T+P+ VL++A + L + + E+ I A + Sbjct: 15 KFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQADI 74 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G + VS LL DI +L + ++ +++ +S G ++F L S P E+P+ Sbjct: 75 EEPGRVLVSGRLLADIANRLPNAPVRFTTED----SKITVSCGSAHFTLLSMPVEEYPTL 130 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + V + A + +++ + G+ + E L L +ATD +R+ Sbjct: 131 PQISEQSGL-LPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYRV 187 Query: 182 AVAEVDIVAQIA----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIE 233 AV E+D + + +VP + + EI + ++ V+++++ I + + Sbjct: 188 AVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHS-GTISVAITDTDDRQLIAFSAD 246 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +++ LI G FP + + P + D +N +L +A RV ++ R A++ + + D Sbjct: 247 KKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFTID 305 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + +A ES++ + ++LL+ + + S+ V + Sbjct: 306 GLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKTDNPNK 365 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 V I + + D N Y+L P Sbjct: 366 PGPVLITSQSSKDQAGAD---NYRYLLQP 391 Score = 36.4 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 7/128 (5%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 + F++ V V + L+G+ E+ L L + D A + Sbjct: 12 HNVKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSF--DYEVSARTQ 69 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDG 244 I A I + ++V + + +I L + + V+ + +S+I ++ S + + + Sbjct: 70 --IQADIEEPGRVLVSGRLLADIANRLPN--APVRFTTEDSKITVSCGSAHFTLLSMPVE 125 Query: 245 EFPNYQNV 252 E+P + Sbjct: 126 EYPTLPQI 133 >gi|218290895|ref|ZP_03494959.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218239162|gb|EED06364.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 370 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 90/368 (24%), Positives = 173/368 (47%), Gaps = 12/368 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ + L RI + + V VL++A G + + A ++ + + AS Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLMEAERGQVTLSAYDYDVALRMTVEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + A L ++VR+L G + +I G ++ L F EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGT-VDIATIAPHHLSASIDVGTTHAELHGFDPEEFPD 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E+++ L +E +A + ++ R L G++ + ED KL +ATDG Sbjct: 120 LPDMTGIVPVEISAKTLVEAIESVGYAASKQDASRPILEGVY--VGYEDGKLIWMATDGL 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 RLA + +++ +PR+A+ E+ R+L D++++V S S + + + Sbjct: 178 RLAKVSQTVDREMS--IRCTIPRRALTELTRLLDADDDATLQVYQSASYVMFTWNGVQLF 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL GE+P+ V+P E V+ L++AV+RV++M+ V L + L +T Sbjct: 236 GRLYQGEYPDTSRVMPREFAAECTVDRRRLKEAVERVTVMAEHEHHTVSLYVKGGALELT 295 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + + G+A E + V + + + N +Y+LE+++ + S +VV +V +SV Sbjct: 296 SRSTERGRAREEVPLVEFAGDEIKVSLNARYVLEMLEAVESSKVVRMQVA----QGRNSV 351 Query: 358 FIRGKDKD 365 +D + Sbjct: 352 LFTDEDGN 359 >gi|157803823|ref|YP_001492372.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel] gi|157785086|gb|ABV73587.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel] Length = 379 Score = 257 bits (658), Expect = 2e-66, Method: Composition-based stats. Identities = 113/397 (28%), Positives = 203/397 (51%), Gaps = 33/397 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ VE +++ LG A +IE++N IP ++ L A DG LE+ ++ ++ ++ I V Sbjct: 3 KLIVETKMLVQSLGFASSVIEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G +TVS L D+VRKL D + T + I + F L + P S FP+ Sbjct: 63 VSEGELTVSTKTLNDVVRKLSDSEL---TLTDLGTTGLEIKGKNCTFNLFTLPVSSFPAM 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 SF+++ + ++E T F+++ +E RY LNG++ HI +++ + +TDGHRL Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FYSASTDGHRL 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237 +++ V + QI K +I+P+K+ EIL+I+ + ++V LS ++I E+ M Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINQDIEVLLSSNKIKFICNENTIM 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG FP+Y IP S+ +L +N ++DR++I++ + +AVKL LS + L + Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIDRIAIITVEKFRAVKLLLSRETLEI 296 Query: 298 TVDNPDMGKAIESMNVYY---------NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + G A E +N ++ + I FN +YL +++ + SD V Sbjct: 297 SAVGEARGNAQEVINSSQAKESFYEYNSDESLAIGFNPQYLDDVLKAVKSDL-----VEL 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ V I+ + +V+MP+++ Sbjct: 352 YFSGVSAPVLIKFPENPED---------IFVVMPVKV 379 >gi|24212702|ref|NP_710183.1| DNA polymerase III subunit beta [Leptospira interrogans serovar Lai str. 56601] gi|45655916|ref|YP_000002.1| DNA polymerase III subunit beta [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] gi|24193333|gb|AAN47201.1|AE011192_2 DNA polymerase III beta subunit [Leptospira interrogans serovar Lai str. 56601] gi|45599149|gb|AAS68639.1| DNA polymerase III beta subunit [Leptospira interrogans serovar Copenhageni str. Fiocruz L1-130] Length = 373 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 85/390 (21%), Positives = 180/390 (46%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V S+ L+ + +I + + ++ ++A + A+ EI I ++PA Sbjct: 1 MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNIS----HGDSNFYLQSFPE 115 V G++++ A L + + + +S + + + V I+ D + Sbjct: 61 VTQEGNVSLPAKQLSSFFKTIHFEDTNLSLEESDSNSSIVYITDASGKNDYKSKISGMDA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E + + + S+++ +++ +T +A+A E+ R+ NG++ N + KL V Sbjct: 121 DEIKTISKIDSSQVSSFPSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNGD--KLIFVG 178 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDG RL E + + + SIIVP KA+ EI +++++ + + L + +I+++ ++ Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEV-GNIGLIDGQIYVSANNI 237 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +LI+G FPNY+ VIP + ++ + ++ +V + + V+L+ S + L Sbjct: 238 ELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQVRLTFSKNNL 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +A + + Y+ + I F +YL++I +I D+EV +NS Sbjct: 298 NLFAQTLGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DNEVKIEFSDANS 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + + V+MPM++ Sbjct: 353 PVIFKDP---------SDPEFISVIMPMKL 373 >gi|304382374|ref|ZP_07364876.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii DSM 16973] gi|304336491|gb|EFM02725.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii DSM 16973] Length = 361 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 17/371 (4%) Query: 15 GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHL 73 R+I KN++P+ L + ++G L I AS E + I D G+ V + Sbjct: 2 STLSRVINSKNSLPILDCFLFEVSNGQLSITASDSENVMKTTIQLDECDGNGNFAVPNRI 61 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 + D VR+L + F ++ +G +F QS E +T E + Sbjct: 62 ILDAVRELAEQPLSIEFTPENYTIKIVYQNGVYHFNAQS-AEEYPKTTPITEGATVITID 120 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 SSVL + + R FA A +E+R +NGI+F + E L VA+DGH+L V + Sbjct: 121 SSVLGDNLSRCLFATAQDELRPVMNGIYFDLTPES--LAIVASDGHKL-VRNKLLNIHNE 177 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 + I+P+K G + ILS V + ++ +S RLI+G +PNY +VI Sbjct: 178 MPATFILPKKPAGILKNILSKDGGDVIIKFDGRNAEISFADGFLSCRLIEGRYPNYNSVI 237 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMN 312 P +N + ++ +L A+ RV +S Q ++ + KL ++ ++ D A ES+ Sbjct: 238 PQNNPNRVTIDRKSLLGALRRVLPFASDSSQLIRFHIEGGKLELSSEDIDFATSAKESVT 297 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 Y PM I F L EI+ N+ S +EV+ L + + I ++ Sbjct: 298 CEYIGTPMSIGFKGSSLSEILSNLES-----EEVIVELADPSRAGIIVP------GTQEE 346 Query: 373 KVNAFYVLMPM 383 + ++MPM Sbjct: 347 NTDVLMLIMPM 357 >gi|315657690|ref|ZP_07910572.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] gi|315492162|gb|EFU81771.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. holmesii ATCC 35242] Length = 380 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 156/391 (39%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ + R + E + + R I + + V V ++A + +E + E+ + A Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G V LL + R L A + F + ++I+ G L E+P Sbjct: 61 EVTDPGVAVVDGKLLSETARALPSRADLVKFATED--NYLHITCGSFKQKLIMMHSEEYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ ++ + + + A + +E L GI + + KL +ATD + Sbjct: 119 PLPQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLATDRY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234 R+A+ E+ ++V K + + + +++ V+V++ + I L Sbjct: 176 RMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATA-GDVEVAVGSANNPASLIGLAANG 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 + ++ DG +P+ + + P + V + RV+I+SS Q + L +S Sbjct: 235 RVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSG 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L N A +++ N + + FN + LLE + I + Sbjct: 295 QLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAID-----EPYARLSFKDE 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ ++ ++ + Y++MP+R Sbjct: 350 AKPVVITGQKEE---TGEDNLTFRYLIMPIR 377 >gi|320355369|ref|YP_004196708.1| DNA polymerase III subunit beta [Desulfobulbus propionicus DSM 2032] gi|320123871|gb|ADW19417.1| DNA polymerase III, beta subunit [Desulfobulbus propionicus DSM 2032] Length = 376 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 91/391 (23%), Positives = 187/391 (47%), Gaps = 25/391 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + R D+L+ +G I +K T+ + +VLL+ + + + EI + +PA V Sbjct: 4 HFNIGRDDLLKAIGAQQNITNKKGTLAILSNVLLEVQPDHIVLTGTDLEIGLKQRVPAEV 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G++T+ A L+++ R+ G+ I KE + V IS G S + L EFPS Sbjct: 64 LETGTLTLPAKKLFEVARE--SGSSILSLKELD-NNWVEISAGPSLYRLAGMVADEFPSF 120 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATDG 178 + S +L +LV++T F++A + E + L + ++ + L V +DG Sbjct: 121 PAYNEEAMVIMESVILADLVDKTVFSIAQDKENMFTLTAAMLQKVMQDDHVMLKMVTSDG 180 Query: 179 HRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 HRL + ++ + + P ++PR+ V EI + +K +S+ + E + L + Sbjct: 181 HRLTIMSKEVETSLEQLHLNPITLIPRRGVQEIRKFCENK-TSLSFGVEEKQAVLKSDDS 239 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +RL++G+FP++Q ++ S + +R++ +++ R+++ + A+K+ ++ + Sbjct: 240 LLIIRLMEGDFPDFQGLLSVLSKENSIRIDRIRFLESLKRINLFTEDLFHAIKMDIADNT 299 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + +T N D G A + NV Y+ P+ + FN +Y +E + + D + +++ Sbjct: 300 MVLTSQNADFGSAKDEFNVEYSGPPLTLGFNCRYFIETLQVMEGDV-----ITASINTQE 354 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I D ++MPM++ Sbjct: 355 SPCMITS---------DEDKGFLSIIMPMKL 376 >gi|206895201|ref|YP_002246438.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus DSM 5265] gi|206737818|gb|ACI16896.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus DSM 5265] Length = 361 Score = 257 bits (657), Expect = 2e-66, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 178/386 (46%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + + ++++ L R + +K T PV ++LL+A D L+I + + ++ I Sbjct: 1 MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIALE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 TV A D V+K EN ++IS G ++ L + P E+P Sbjct: 61 AAEELRTTVPAKFFSDFVKKAPGSEVQLEVGEN----YLSISSGSASLKLSTLPPEEYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDGH 179 + + +F + ++ LK V+ ++ E+ L GI + + L AV TDGH Sbjct: 117 LEVLQG-NTFTVDAATLKKAVDAVKKNVSKGELRNPVLEGILL--DGSEGMLIAVGTDGH 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA + D+ + +P + ++ L + S+ ++ + + + + + Sbjct: 174 RLAACKTDLQV----TETACLPADVLSDVCDTLVNTGSTAYITFGDGEVAFENDVIYAVI 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 R ++G+FP +++VIP + + +R++ + +DR +++ AV+L+L L ++ Sbjct: 230 RTLEGQFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSLTISA 289 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + P++G +ES+ V + I NY YL +++ I +D VVF L S + I Sbjct: 290 EVPELGSFVESIPVDKEGPDLKIACNYAYLQDVLSGID-----EDNVVFGLTSPLHPIVI 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + + N ++MPM++ Sbjct: 345 RPVESE---------NYVGLVMPMKL 361 >gi|11320919|gb|AAG33955.1|AF197895_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 366 Score = 257 bits (656), Expect = 3e-66, Method: Composition-based stats. Identities = 101/382 (26%), Positives = 205/382 (53%), Gaps = 21/382 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + +++ L R++ + ++P+ +VL+ +G+L + + EIE+ I S Sbjct: 1 MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G+ T+S L DI R + + I N +++I G+S + L + P FP Sbjct: 61 TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ F + S +LK ++E+ F+M +++ YLNGI + D L AVATDG+ Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVPIYLNGILLE--KTDRSLYAVATDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +++ + I SI++PRK V E+ R+L+ +KV + ++ I ++IE L + Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++P+Y++V+ + + + +N L+Q++ R +I+S + V++ + + + + Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 DN + A + N+ Y + I N Y++EI+++I+S + + L+++N+S+ I Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381 + N + YV+M Sbjct: 350 EAE---------NDASILYVVM 362 >gi|116326857|ref|YP_796577.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116329804|ref|YP_799522.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] gi|116119601|gb|ABJ77644.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis L550] gi|116123493|gb|ABJ74764.1| DNA-directed DNA polymerase, beta subunit [Leptospira borgpetersenii serovar Hardjo-bovis JB197] Length = 373 Score = 256 bits (655), Expect = 3e-66, Method: Composition-based stats. Identities = 88/390 (22%), Positives = 179/390 (45%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V SD L+ + +I + + ++ ++A + + + A+ EI I ++ A Sbjct: 1 MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLSAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH-----GDSNFYLQSFPE 115 V GSI++ A L + + I +E++ + + D + Sbjct: 61 VIQAGSISLPAKQLSSFFKTIHFEETILSLEESDGDSSIVYITDASGKNDYKSKISGMDA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E + + S+++ +++ +T +A+A E+ R+ NG++ + KL V Sbjct: 121 EEIKTISKVSPSQISSFPSNLINDMIRKTSYAIAHEDQRFIFNGLYM--IPDGNKLTFVG 178 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDG RL E + + + SIIVP KAV EI +++++ + + + L +S+I+ + ++ Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAVREISKMIATSE-TGNLGLIDSQIYASANNI 237 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +LI+G FPNY+ VIP S + ++ + ++ +V + + VKL+ S + L Sbjct: 238 ELLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSRQVKLTFSKNNL 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +A + + Y+ + I F +YL++I +I D+E+ S+S Sbjct: 298 NLFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSID-----DNEIKIEFSDSSS 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + + V+MPM++ Sbjct: 353 PVIFKDP---------SDPEFISVIMPMKL 373 >gi|11320895|gb|AAG33943.1|AF197883_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 97/383 (25%), Positives = 198/383 (51%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK + ++ L R I + + P+ ++L+ + +L + + EIE+ I Sbjct: 1 MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G+ TVS+ L DI R + + ++ ++ I S + L++ P FP Sbjct: 61 QHYVSGNTTVSSRKLLDICRHSLNSSNMNIEL---HANKIYIISDTSQYILRTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y+ F + S++LK+++E+THF+M +++RYYLNG+ + L VAT G+ Sbjct: 118 NHNNFHYISEFYIDSNILKSMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LYMVATAGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL + + Q + SII+ RK + E+ ++L+ +K+ + ++ I + IE L + Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY ++ + + +NC L+Q++ R +I++ + V++ + +++ + Sbjct: 236 AQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A ++ N+ Y + I N Y+L+I+++I+S + ++ L++SN+S+ Sbjct: 296 SDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSINS-----ENILLFLNNSNNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + N + Y++M Sbjct: 351 IEAE---------NDASTIYIVM 364 >gi|325294209|ref|YP_004280723.1| DNA polymerase III, beta subunit [Desulfurobacterium thermolithotrophum DSM 11699] gi|325064657|gb|ADY72664.1| DNA polymerase III, beta subunit [Desulfurobacterium thermolithotrophum DSM 11699] Length = 365 Score = 256 bits (655), Expect = 4e-66, Method: Composition-based stats. Identities = 105/390 (26%), Positives = 185/390 (47%), Gaps = 30/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++I + +++ IP+ ++L +A D +L++ A+ EI ++ I Sbjct: 1 MKIRISSNNIKSAVKKVFSAADKRGNIPILSNILFEAEDNILKLTATNLEIGVSTFIDCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G TV+A KL F+ +++ + +S F L + P EFP Sbjct: 61 VTESGKTTVNAQK----CAKLFSSLIGEEFEVETDDSKLIVKSANSRFSLATLPPEEFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +L+SS + +++ +A++ +E RY L G++F + K+ AVATDGHR Sbjct: 117 IEFP-ESFGVKLSSSDIDRAIKKVSYAVSKDEARYILTGVYFRSFGD--KIHAVATDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+ A+ S I+PRKA+ E+ ++L D +++ E++I I Sbjct: 174 LALFEMKAEAE---EFSSIIPRKALSELKKLLKESDE-IELLGKENKIFFRIGDTLFWSS 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 +IDGE+P+Y VIP N E L A+ VS++ I+AV L+L+ L + Sbjct: 230 VIDGEYPDYMAVIPEDNPLECIAIREELVNALKEVSVIYDKEEIRAVILNLTPGNLRLIA 289 Query: 300 DNPDMGKAIES----MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ A E + V Y+ +I FN +LLE + + D + +D S Sbjct: 290 RKMELDSASEEAEVNIPVEYSGEEFEIGFNINHLLEAVSSFDG-----DTIKILMDQPIS 344 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I +++ N V+MPM++ Sbjct: 345 PVLIVSEEEPELKN---------VIMPMKV 365 >gi|304390482|ref|ZP_07372435.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] gi|304326238|gb|EFL93483.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii subsp. curtisii ATCC 35241] Length = 380 Score = 256 bits (654), Expect = 5e-66, Method: Composition-based stats. Identities = 74/391 (18%), Positives = 156/391 (39%), Gaps = 21/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ + R + E + + R I + + V V ++A + +E + E+ + A Sbjct: 1 MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G V LL + R L A + F + ++I+ G L E+P Sbjct: 61 EVTEPGVAVVDGKLLSETARALPSRADLVKFATED--NYLHITCGSFKQKLIMMHSEEYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ ++ + + + A + +E L GI + + KL +ATD + Sbjct: 119 PLPQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLATDRY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234 R+A+ E+ ++V K + + + +++ V+V++ + I L Sbjct: 176 RMALKEMPWAGVQGGDQDLVVKAKNLSDAAKNIATA-GDVEVAVGSANNPASLIGLAANG 234 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293 + ++ DG +P+ + + P + V + RV+I+SS Q + L +S Sbjct: 235 RVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSG 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L N A +++ N + + FN + LLE + I + Sbjct: 295 QLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAID-----EPYARLSFKDE 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ ++ ++ + Y++MP+R Sbjct: 350 AKPVVITGQKEE---TGEDNLTFRYLIMPIR 377 >gi|149174463|ref|ZP_01853089.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797] gi|148846573|gb|EDL60910.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797] Length = 376 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 91/389 (23%), Positives = 169/389 (43%), Gaps = 23/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-GAIPA 59 MK++ RS +L +I + V L+A DG + + E+ I Sbjct: 1 MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESE 117 V V G I +S H L I+R+ + K++E + + I G S F L SE Sbjct: 61 EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP+ + FE+ + ++ RT FA E RY L G+ F + + KL ATD Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDVEGD--KLTLAATD 178 Query: 178 GHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 G RLA+ E ++ + ++P KA+ I + L+ + ++++++ + + + Sbjct: 179 GRRLAMVESACSYQGSEAYENNRPVIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKSGR 238 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ RL++G FP Y++VIP + + AV + I++ V + V SS Sbjct: 239 STIFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSSGL 298 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + +G++ + + + + I F+ +YL + + + S + +L S+ Sbjct: 299 LTLKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAA----HIRLQLIDSD 354 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S+ ++ D YV+MP+ Sbjct: 355 SAAVLKTDD-----------GYTYVIMPL 372 >gi|89885797|ref|YP_515995.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118] gi|89347795|gb|ABD71997.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118] Length = 378 Score = 255 bits (653), Expect = 6e-66, Method: Composition-based stats. Identities = 108/391 (27%), Positives = 189/391 (48%), Gaps = 23/391 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLL-QANDGLLEIKASGPEIEITGAIPA- 59 K+T ++ + LL I+ R +++ + +VLL +DG + + E+E+ Sbjct: 4 KLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDGRITAVGTDLEVEVNATQHVG 63 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S S TV + L DI++ + + ++ EN + ++ + F L P +FP Sbjct: 64 SFTGALSTTVESRKLMDILQTMANDEPVTLASENPD--HLVLTGANGTFKLSCLPADDFP 121 Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + Y +F + VLK L+E+T FAMA +IRYYL G+ F + E +L +DG Sbjct: 122 RMEIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVV--EGGRLTVCTSDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+A EV + + I +I+PRK+V E+ R+ D V+V LS ++ + +L Sbjct: 180 FRVATDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQARIRFGALEFV 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD----K 294 +L++G+FP+ + V+P ND + ++ + L A+ R +++ S ++ V+ L D Sbjct: 240 TKLVEGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRFILDHDLISGH 299 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + N SM V Y+ +DI FN KYLL+ + + D++V + F Sbjct: 300 LKVESSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLV---LAFSHTLVP 356 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + D + Y+LMPMRI Sbjct: 357 GAALMTLPSDD---------HFKYILMPMRI 378 >gi|258648469|ref|ZP_05735938.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259] gi|260851226|gb|EEX71095.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259] Length = 374 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 101/387 (26%), Positives = 180/387 (46%), Gaps = 17/387 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK + S + L R+I K T+P+ + LE+ A+ EI + I Sbjct: 1 MKFVISSSVLSARLQSIGRVIAAKTTMPILNCFVFDIKSKRLELTAADNEITLRTYIDLV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D V+A + D ++++ + F E+ + V +G NF +S E P Sbjct: 61 ESDADIRFAVNAKTIQDAIKEIPEQPLEIFVNESNMEITVEYQNGKYNFMAESADEYPIP 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 EE ++ + S L N + R+ FA A + +R +NGI+F + L + VA+DG Sbjct: 121 PALNEETMH-VNITSGHLLNAINRSLFAAANDPLRPVMNGIYFDLKTSGLTM--VASDGQ 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 ++A + ++ K S I+P+K + IL ++ ++ ++ R + M+ Sbjct: 178 KMA-CNTLVDIKVEKPGSFILPQKPATLLKNILGKEEDTIDMAFDGRRAVFKGTNFEMNC 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RL +G FPNY VIP N + VN L A+ RV I S+ VKL++ + K+ ++ Sbjct: 237 RLTEGRFPNYAGVIPQDNPNIISVNREALIAALRRVLIFSNAVSSLVKLNIDNGKMRISS 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D A E++ Y+ P+ I + +LLE+++N+ +EVVF+L ++ + Sbjct: 297 QDTDYSMSAEENLLCDYSGTPIKIGYRGPFLLELLNNLPG-----EEVVFKLGDASRAGL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I +++ + +LMPM I Sbjct: 352 ILPTEQE------EGEDILMLLMPMMI 372 >gi|24753762|gb|AAN64010.1|AF434658_7 DNA polymerase III, beta subunit [Leptospira interrogans] Length = 373 Score = 255 bits (652), Expect = 8e-66, Method: Composition-based stats. Identities = 83/390 (21%), Positives = 180/390 (46%), Gaps = 22/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V S+ L+ + +I + + ++ ++A + A+ EI I ++PA Sbjct: 1 MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNIS----HGDSNFYLQSFPE 115 V G++++ A L + + + +S + + + V I+ D + Sbjct: 61 VTQEGNVSLPAKQLSSFFKTIHFEDTNLSLEESDSNSSIVYITDASGKNDYKSKISGMDA 120 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E + + + S+++ +++ +T +A+A E+ R+ NG++ N + KL V Sbjct: 121 DEIKTISKIDSSQVSSFPSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNGD--KLIFVG 178 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TDG RL E + + + SIIVP KA+ EI +++++ + + L + +I+++ ++ Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEV-GNIGLIDGQIYVSANNI 237 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + +LI+G FPNY+ VIP + ++ + ++ +V + + V+L+ S + L Sbjct: 238 ELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQVRLTFSKNNL 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + +A + + Y+ + I F +YL++I +I D+EV +NS Sbjct: 298 NLFAQTLGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DNEVKIEFSDANS 352 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + V+MP+++ Sbjct: 353 PIIFKDP---------SDPEFISVIMPVKL 373 >gi|160946605|ref|ZP_02093808.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270] gi|158446989|gb|EDP23984.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270] Length = 368 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 90/384 (23%), Positives = 178/384 (46%), Gaps = 24/384 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I + ++++L L+ + R I KN + +L D L +K++ E+ I + Sbjct: 1 MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTECK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + ++A ++ +IVRKL + +V I ++ F + + +P Sbjct: 61 VEKEGEVLLNASMISNIVRKLPNDEVYIKVDRE----KVFIQSENAKFNIIAMDIYSYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E F + ++LK ++T FA A ++ R LNG+ I ++ + VA DGHR Sbjct: 117 FPTFENKVDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKN--VDFVALDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A I I K +I+P +A+ EI +I+ S V VSL + E+ S R Sbjct: 175 IAKRSFKIEEDIEK--KVIIPPRALNEISKIVPEG-SVVGVSLVKGSAIFTFENTIFSTR 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299 +IDGE+ NY+ + + ++ V +L A++R +I+ + + V ++ + + Sbjct: 232 VIDGEYLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVE- 290 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + ++G + +++ + I FN KY+LE + I D V + + I Sbjct: 291 GSSEIGDLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIE-----QDFVEITFNGRAGACII 345 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 + +D+ ++ Y+++P+ Sbjct: 346 KPEDE--------NIDYTYLVLPV 361 >gi|227485758|ref|ZP_03916074.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] gi|227236313|gb|EEI86328.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus ATCC 51172] Length = 370 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 175/387 (45%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ ++++ L R + + I + + + L + + EI I A Sbjct: 1 MKFEIKQKELMKALNIVNRAVSKSTNIQIHELIYFSTENNRLSMTSFDGEISIKTLADAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + V A L+ +I+RKL D K G ++ IS SNF L +F + Sbjct: 61 IIKEGVMAVKADLITNIIRKLPD----ELVKIELDGGKIKISCKRSNFNLVAFEYFDKEE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + LK + +T FA +E + L GI F + E L + VA DG+R Sbjct: 117 I-NIPNTVALSIDNDKLKRSISQTEFATTLDETKLALTGILFELKEGCLNM--VALDGYR 173 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + + I+P++++ E RI+S DS + +E+ + E M Sbjct: 174 VALKKIKLDYPGDFEDTEYIIPKRSLLEWSRIVSD-DSKTSLYRNENDLLFASEDTIMLC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 ++ID F +Y+N+I ++ + V + L A+DR ++S R +++++ + + Sbjct: 233 KVIDKNFIDYRNIINDISETTVLVEKSALIAALDRAQVLSDPGRANLIRVNIEDRAMTLR 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E + + +DI FN KY+ + + S +++ SS + Sbjct: 293 S-NSEIGDVKEVIEIDQEGEGLDIAFNAKYMQDGVRACDS-----EKIKLNFKSSLNPCL 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D +K + Y+++P+R+ Sbjct: 347 IYPTD-----SKHEGEDYTYLVLPVRL 368 >gi|313157008|gb|EFR56440.1| DNA polymerase III, beta subunit [Alistipes sp. HGB5] Length = 374 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 182/388 (46%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK +V S +L LL ++I KNT+P+ + L++ + L++ S E + G+I Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELSGNELKVTTSDLETTLIGSITVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 SV+ G+I A L+ D +++ + N+ E+ I+ + + +P Sbjct: 61 SVESEGTIAAPAKLMLDSLKEFSELPLTIDV--NDKNWEITINWKSGSLSIPGASAVSYP 118 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + L N + +T FA A +E+R +NGI+ ++ L V TD Sbjct: 119 AVPQLSAEKKELSMDVDTLVNGINKTIFATADDELRPVMNGIYINLAPGALTF--VGTDA 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L E + ++ S I+P+K + +L +D ++++S ++S ++ Sbjct: 177 HKLVKYESETANEV--TASFILPKKPANLLKSVLLKEDDAIEMSFDSKNALFKLKSHTLV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY VIP +N ++ V+ L + RV++ S+ +++ + +++ +T Sbjct: 235 CRLIEGNYPNYNAVIPANNPNKVLVDRVELVNGIKRVAVCSNPTTNLIRMDIGDNRINLT 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+++ Y+ + I F +L+EI+ N+ + VV L S + Sbjct: 295 AQDIDFSVSANETISCSYDGEEITIGFKSTFLVEILSNMDTPT-----VVIELADSTRAG 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + + + +LMPM I Sbjct: 350 VFKPVYDDKQTS-----STLMLLMPMMI 372 >gi|154249882|ref|YP_001410707.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1] gi|154153818|gb|ABS61050.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1] Length = 367 Score = 255 bits (652), Expect = 9e-66, Method: Composition-based stats. Identities = 90/386 (23%), Positives = 187/386 (48%), Gaps = 25/386 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60 K TV +S+I + + A I + P+ +L + +G + I A+ + + + Sbjct: 3 KFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVGE 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FP 119 + + V A L+ DIVR L + I + ++ + G + + + + + E FP Sbjct: 63 YEGNDAFAVDAELVDDIVRNLPEDEFIFEYS----NGKLLVRSGKAKYNITTVSDIERFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +E F + +S+L+ ++++ F ++E LNG+++ I+ L+L VA+DG+ Sbjct: 119 IVDTDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRL--VASDGY 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK-VSLSESRIHLNIESLSMS 238 RL +AE + + I+ K++ E+ ++LSS V ++ S + N ++ Sbjct: 177 RLGLAEQKL--NLENEFDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTTI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 VR ++ FP+Y+ V+P + + +N + +A+ RV ++S + V+L ++ D + +T Sbjct: 235 VRTVEETFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMELT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D G+A+ES+ + + + + FN K+L E + +I + E+ F + S + Sbjct: 295 SQSSDFGEAVESIPITKDGEDLIVNFNPKFLNEPLKHID-----EKEIEFNFVDNLSPLQ 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 I N N Y+++P+R Sbjct: 350 I---------NPRNVGGYIYIVLPVR 366 >gi|167753684|ref|ZP_02425811.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216] gi|167658309|gb|EDS02439.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216] Length = 374 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V S +L LL ++I KNT+P+ + L++ L + S E + G+I Sbjct: 1 MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+I A L+ D +++ + + N+ E+ +S + + +P Sbjct: 61 GVESEGTIAAPAKLMLDSLKEFAEMP--LTIEVNDQNWEIRLSWKSGSLSIPGASAVSYP 118 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + L VL N + +T FA A +E+R +NG++ ++ L V TD Sbjct: 119 AIPALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVYINLAPS--MLTFVGTDA 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L EV+ ++A S I+P+K + +L ++ ++KVS +++ ++ Sbjct: 177 HKLVKYEVETANEVA--SSFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTLV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY VIP +N ++ V+ L + RV++ S+ +++ ++ +++ +T Sbjct: 235 CRLIEGNYPNYNAVIPTANPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRINLT 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E+++ Y + I F +L+EI+ NI + +V L S + Sbjct: 295 AQDIDFSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPT-----IVIELADSTRAG 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D +++ +LMPM I Sbjct: 350 VFKPVYDDKQSSA-----TLMLLMPMMI 372 >gi|329944739|ref|ZP_08292818.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] gi|328529875|gb|EGF56765.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170 str. F0386] Length = 350 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 76/363 (20%), Positives = 141/363 (38%), Gaps = 21/363 (5%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 +PV V L+A L + + E+ + A V+ G + VS LL DI + L + Sbjct: 1 MPVLAGVRLEAKGSSLVLASFDYEVSAHCEVVADVEEDGVVLVSGRLLADIAKALPNKPV 60 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF 146 + G +V +S G + F L + ++P+ V + + L V + Sbjct: 61 DLEVE----GNKVAVSCGSARFSLAAMAADDYPALPVMPAVAG-TIDAHDLARAVAQVSI 115 Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAV 205 A + ++ L + + L L +ATD +RLA+ E+ A + ++ + + Sbjct: 116 AASRDDTLPLLTSVQIEVEGSSLVL--MATDRYRLAMRELTWSPANTDLSTTALLKARTL 173 Query: 206 GEILRILSSKDS----SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261 ++ + L+S S + S I + L DG++P + + P S Sbjct: 174 SDVAKSLTSSGDVTVALSSESAASSLIGFEAGGRRTTSLLTDGDYPPVRRLFPESTSIHA 233 Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321 V L AV RVS+++ R + +S + L + D +A E + + + Sbjct: 234 TVGTDELMAAVRRVSLVA-DRSTPIHMSFTQGNLELDAGQGDDAQATEQLVAHLEGDDIS 292 Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 FN YLL+ + ++ V ++ + G D Y+LM Sbjct: 293 TAFNPGYLLDGLGALN-----QPYVRLDFTHASKPAVLTGMDS---IGGTEDSTFRYLLM 344 Query: 382 PMR 384 P+R Sbjct: 345 PIR 347 Score = 61.4 bits (148), Expect = 2e-07, Method: Composition-based stats. Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 19/180 (10%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEIT--GAIPAS 60 T++ D+ + R +T+P+ V ++ L + A+ + + PA+ Sbjct: 100 TIDAHDLARAVAQVSIAASRDDTLPLLTSVQIEVEGSSLVLMATDRYRLAMRELTWSPAN 159 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPESE 117 D+ + + A L D+ + L ++ +E I + G L + + Sbjct: 160 TDLSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGRRTTSL--LTDGD 217 Query: 118 FPS----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P E +++ ++ V R I + +L+L A Sbjct: 218 YPPVRRLFPESTSIHATVGTDELMA-AVRRVSLVADRS------TPIHMSFTQGNLELDA 270 >gi|87198663|ref|YP_495920.1| DNA polymerase III beta subunit family protein [Novosphingobium aromaticivorans DSM 12444] gi|87134344|gb|ABD25086.1| DNA polymerase III beta subunit family protein [Novosphingobium aromaticivorans DSM 12444] Length = 415 Score = 255 bits (651), Expect = 1e-65, Method: Composition-based stats. Identities = 105/397 (26%), Positives = 181/397 (45%), Gaps = 50/397 (12%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-----------VDVCGSITVSAH 72 K+TIP+ V ++A+DG+L + + I ++P S + V A Sbjct: 34 KDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATCVPAR 93 Query: 73 LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132 L IV+++ A ++ + + V I+ G S F + P +FP ++ +SF + Sbjct: 94 ALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEHSFSI 153 Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192 A+ L+++ R A++TEE RYYLNG++ H +DL ATDGHRLA D Sbjct: 154 AAGALRDVFARVEHAISTEETRYYLNGVYMH--PQDLDQRFAATDGHRLARLVQDGPDGA 211 Query: 193 AKMPSIIVPRKAVGEILRILS---------SKDSSVKVS------LSESRIHLNI----- 232 A P++I+ R+ V + ++L S D+ S S+S + Sbjct: 212 ASFPAVIIGRRTVAVLDKLLDAAGKVDTSTSDDADKACSRPMVEVDSDSNGRVIYWAMPA 271 Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 +++ + +DG FP+Y VIP + L V+ L A+ RV+ + S + +AVKL Sbjct: 272 PDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTRAVKLE 331 Query: 290 LSS-DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 L +K ++ +P++G A+E + Y P+ I FN Y + V D+V+ Sbjct: 332 LDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSA-----VATDKVLM 386 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + I + +S + VLMP+R+ Sbjct: 387 KFTDAGGPCRIEAEGGESALVQ--------VLMPLRV 415 >gi|312134084|ref|YP_004001422.1| DNA polymerase III subunit beta [Caldicellulosiruptor owensensis OL] gi|311774135|gb|ADQ03622.1| DNA polymerase III, beta subunit [Caldicellulosiruptor owensensis OL] Length = 368 Score = 254 bits (650), Expect = 1e-65, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 169/389 (43%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V++ + + + + +L++A D + + ++++ A Sbjct: 1 MKFVVDKDILQDNISKVIPAAASTKVTSILECILIEAEDS-IVFTTNDMKMQMQTEFEAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L DIV+KL DG ++NE V I F L + +FP Sbjct: 60 ILERGAALVKAKLFSDIVKKLPDGDVEVIREDNE----VRIRSQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ E +S + ++R FA + +E R G+ F E+D + V DGHR Sbjct: 116 MDKKPAESFCEFVASEFVDSIDRVIFATSKDETRPTFTGVLFERQEDDF-VNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ ++ S IVP + +I +I+ +D V+VS E++ I S ++ V Sbjct: 175 LAICKIK-PVEVEGSFSKIVPADNLDDITKIIDIEDAEKVRVSFYENQATFEIGSTTVIV 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296 LI G+F +Y++ IP + ++ L ++R SI+S IQAV + Sbjct: 234 TLIAGKFFDYKSAIPTEYSTRISISTDVLESTLERASIVSKDEKTNIQAVIFETNGMIFK 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + D G+ E + + I FN KY L+++ + E+ + S S Sbjct: 294 VYSMSAD-GRYEEDVLCSVEGKDIKIGFNVKYFLDVLKVLDG------EINLFITSQTSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D + N Y+++P+++ Sbjct: 347 SIVQKPDDE---------NYIYLVLPIKM 366 >gi|118602062|ref|YP_903277.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] gi|118567001|gb|ABL01806.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str. Cm (Calyptogena magnifica)] Length = 367 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 108/386 (27%), Positives = 197/386 (51%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++L L ++E+K +P+ HVL+Q D LL + + EIEI + Sbjct: 1 MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRASQIIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 S T+ A L DI++KL ++ + +++ I ++F L + +FPS Sbjct: 61 NQEEISFTIYAKDLIDIIKKL---SEDIIIEFIIESSKIYIKVNKNSFELNTSNHQDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ VLK+L+E T F+M +++IR YLNG++ I++ + VATDGHR Sbjct: 118 LPKIKNSDIIKIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNS--IVVVATDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 L++ +V ++ S+I+PRKAV E+ ++L+ + + LS++ +L + ++ Sbjct: 176 LSIGKVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLISNNTTIIS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG FPNY V+P + + + +N ++ + SI R + VKL + KL + Sbjct: 236 RLIDGNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFKNSKLHIFS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + G+A +N+ + ++I FN YL+ I++ + ++E+ D + S + Sbjct: 296 HS-ERGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEINM----IVPDGKSQSCLL 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D YV+MPMRI Sbjct: 351 SSMNDDI---------YQYVVMPMRI 367 >gi|239787351|emb|CAX83828.1| DNA polymerase III subunit beta [uncultured bacterium] Length = 372 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 97/389 (24%), Positives = 191/389 (49%), Gaps = 25/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV R ++ L +IE+K +PV H LL+A + I + +I I+ A Sbjct: 1 MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDIVISEECRAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS+ V LL+DIV++L+ +SF E+ ++ + G S F L P +FP Sbjct: 61 TQIEGSLCVPGVLLHDIVKRLEGYDTLSFSHED----QLFLRCGRSEFRLSVLPAEQFPD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + +VLK +++ M ++ LN +F H E L V+TD H+ Sbjct: 117 VSQLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQ 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS---- 236 LA++++ + ++ ++V RKA+ EI R+L D++ +V+L S + + ++ Sbjct: 177 LALSKISLEKKLDLQTGLVVGRKAITEIRRLLLD-DNAKQVTLGASHARIQCDVVTDDLV 235 Query: 237 --MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+DG +P Y V+ ++ + N + L+ A++R+ ++ + + + L+ S++ Sbjct: 236 IMFTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNL 295 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + MT + D G E + + ++ P I N YLL ++ I + ++V D+ + Sbjct: 296 MTMTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDT-----EQVEIHADNPH 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ I+ + + Y++MP+ Sbjct: 351 EAMHIKPFGLEYPH---------YMIMPL 370 >gi|296392442|ref|YP_003657326.1| DNA polymerase III subunit beta [Segniliparus rotundus DSM 44985] gi|296179589|gb|ADG96495.1| DNA polymerase III, beta subunit [Segniliparus rotundus DSM 44985] Length = 397 Score = 254 bits (649), Expect = 2e-65, Method: Composition-based stats. Identities = 93/401 (23%), Positives = 171/401 (42%), Gaps = 31/401 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASV 61 V R + + R + + +P+ +LL A++ G L + + ++ + A V Sbjct: 8 FEVPRDLFADSVSWVTRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQV 67 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + VS LL DI + L + + GT+V++ G + F L S P EFPS Sbjct: 68 SGPGKVLVSGRLLADIAKALPSPSVRIATE----GTKVHVRSGSAKFTLPSMPVDEFPSL 123 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E A + + + A + ++ L G+ +E ++L ATD RL Sbjct: 124 AEHPTPIGSAQAKELFA-AISQVGVAASRDDTLPALTGLRLVFTQEGIEL--AATDRFRL 180 Query: 182 AVAEVDIVAQ--IAKMPSIIVPRKAVGEILRI-LSSKDSSVKVSLSE-----SRIHLNIE 233 +V ++ + + + +VP + E R L + D+ V+ +L + S + + Sbjct: 181 SVRKLVWDGKGVGEEPLTALVPAAVLSEFARTQLETDDAPVEFALDQGAGSPSLLGVQAG 240 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 ++ RL+D + P+ +IP RV L +AV RVS++S+ R Q ++L Sbjct: 241 PFRITTRLLDAQLPDVSQLIPKRYSSLARVELAPLVEAVRRVSLVSARRSQ-IRLDFQGS 299 Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S L ++ + G A E + V + P+ + FN YLL+ + + F Sbjct: 300 GSDALLKLSAGAEEAGFAEEELAVQHWGEPISVVFNPGYLLDGLSTFRGECG-----QFG 354 Query: 350 LDSSNSSV-FIRGKDKDSKNNKD----NKVNAFYVLMPMRI 385 N +V + G + + + + + YVLMP+R+ Sbjct: 355 FTGPNRAVALVTGDGPEPEETAEGYTADAPDQVYVLMPVRL 395 >gi|284047390|ref|YP_003397729.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM 20731] gi|283951611|gb|ADB46414.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM 20731] Length = 375 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 168/389 (43%), Gaps = 20/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + E ++ + + R I N P+ + L++ A + + + Sbjct: 1 MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNTLQLIAMDNTYMMNKKLDVN 60 Query: 61 VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G + + A + D++ + D E + + +++ E+P Sbjct: 61 GEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMDPEEYP 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + +L ++ L+ T +A +T+ R G++ + + L AV T+ H Sbjct: 121 AMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQ--HLTAVGTNTH 178 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238 RLA+ EV++ S+++P + + EI L+ + V ++L E +I + SL++ Sbjct: 179 RLAIKEVELPEGDDSEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGSLTII 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI+G+FP+Y+ IP S N ++ +A+ RVS+ S V+L++ +D + ++ Sbjct: 239 SSLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADGITLS 298 Query: 299 VDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 DMG+ E + P++I FN +Y+ + N + D V + S S Sbjct: 299 SAVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGT-----DRVSLETNQSLSP 353 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S Y+L P+R+ Sbjct: 354 ARLMPEGDES---------YTYILTPVRV 373 >gi|323342256|ref|ZP_08082488.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix rhusiopathiae ATCC 19414] gi|322463368|gb|EFY08562.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix rhusiopathiae ATCC 19414] Length = 372 Score = 254 bits (648), Expect = 2e-65, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 169/391 (43%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +++ + L R + +P+ + + D L + AS I I + Sbjct: 1 MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60 Query: 58 ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +V G + + + + + VRKL D I F + G IS + + + Sbjct: 61 DENKLNVYEEGEVVLESRYILEAVRKL-DSDFIDFEIID--GALTRISGNKAEYNINGSK 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P+ + F++ L ++++T F +T E R G+ F + + V Sbjct: 118 AELYPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNF--KADGNTMNCV 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD +RLA +D+ + +I +P + E+ + +S + V +++S+ + ++S Sbjct: 176 ATDSYRLAKKSIDLPTPMD--FNICIPAVNLYEVSKTISD-NKDVHIAVSDKLVQFYVDS 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG FP+ +IP EL VN ++ A+DR S + S VKL S++ Sbjct: 233 TLIQSRLIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEG 292 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ + ++G + E + + Y + I F+ +Y++E + + + D V Sbjct: 293 VLISSKSQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKT-----DTVKILFVGE 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + DS +++P+R Sbjct: 348 MQAFILKNPEDDSIVQ---------LVLPVR 369 >gi|153830817|ref|ZP_01983484.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39] gi|148873701|gb|EDL71836.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39] Length = 250 Score = 253 bits (647), Expect = 3e-65, Method: Composition-based stats. Identities = 83/253 (32%), Positives = 141/253 (55%), Gaps = 7/253 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + ++P+ ++LL+ + L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G ITV A DI R L D A I+ E G + + G S F L + P S+FP Sbjct: 61 GEFEAGCITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + ++ + L + L+ L+E+T F+MA +++RYYLNG+ F I + L +VATDGH Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 R+AVA+ + A A+ IIVPRK V E++++L + + V + + S + + + Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234 Query: 240 RLIDGEFPNYQNV 252 +L+DG FP+Y+ V Sbjct: 235 KLVDGRFPDYRRV 247 >gi|17158705|ref|NP_478216.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120] gi|17134654|dbj|BAB77212.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120] Length = 456 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 102/393 (25%), Positives = 187/393 (47%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK+++E+S + E+L A I K T P+ ++LL A DG++ + + I A Sbjct: 1 MKLSIEQSKLAEILETAYFAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V+ G + + A LL D + ++ +I+ EN+ I+H L EFP Sbjct: 61 NVETSGQVALPAKLLTDTINNVRG--EITLEVENQA---CIITHNSGKCRLIGGKPDEFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L++ L+ +E T + +E + L G+ F I + K A +T+GH Sbjct: 116 TLPKGENPIEVNLSAKKLQAALEGTLYCTNGDETKLVLTGVNFKI--DTNKWQAASTNGH 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVK-VSLSESRIHLNIESLSM 237 +LA+ + ++ + VP K++ E+ +ILS S D+SV + LS I ++ + Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLSELSKILSQSADTSVCNILLSNKTIEFSLPHTKV 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295 RL++GE+P ++IP + + E + A+ RVS ++ + + VK+ L + + Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293 Query: 296 CMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+G A++S+ + + I N YLLE + +IS+ DE+V R + Sbjct: 294 TLYTEATDIGDAVDSVLMKPATNHSENISIGLNIDYLLEGLKHIST-----DEIVVRCNK 348 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I +N Y++MP+ I Sbjct: 349 PTQPVIICPMG--------GLLNQLYLVMPVEI 373 >gi|315650191|ref|ZP_07903266.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum DSM 3986] gi|315487548|gb|EFU77856.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum DSM 3986] Length = 383 Score = 253 bits (646), Expect = 4e-65, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 173/385 (44%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ ++ L + + K + +L+ A D + + A+ E+ I + A Sbjct: 15 MNLKFQKTQLVNALSIVMKAVSTKTASVILESILINATDNRVVLDATDNELSIQTEVDAI 74 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + ++A L +IVRK +D + + + + + + F + EF Sbjct: 75 IVEEGGVVLNAKLFSEIVRKFEDNESLI-ELDVDKDFKTTVKCEQAVFNIMGIDPVEFIP 133 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S +++ LK ++ +T F+ A +I + G + + K V DGHR Sbjct: 134 MPNIKRDDSIKMSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNVAKF--VTLDGHR 191 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSV 239 +++ ++++ + +VP K++ EI+RI+ S +V + S+ I + + Sbjct: 192 MSIRNINLIGEYED-HRCVVPVKSLQEIMRIIGSDTQKNVNIYFSKDHILFEFDRTLVLS 250 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 R++DGEF ++++ D ++ V+ + A+++ I+ + L + + L ++ Sbjct: 251 RILDGEFFRIESMLSRDYDTKVTVSRLKFQSAIEQSMILIRENEHKPMILDIENGMLKIS 310 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++ +G +N+ + + I FN K++++ + I DD V ++ S F Sbjct: 311 VNSS-LGFMDTKVNIEKSGSDLKIAFNPKFVVDALKVID-----DDFVDIYFTNAKSPCF 364 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR DN+ Y+++P+ Sbjct: 365 IR----------DNENTYTYLILPV 379 >gi|75812736|ref|YP_320353.1| DNA polymerase III beta subunit family protein [Anabaena variabilis ATCC 29413] gi|75705492|gb|ABA25164.1| DNA polymerase III, beta chain [Anabaena variabilis ATCC 29413] Length = 444 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 104/393 (26%), Positives = 188/393 (47%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK+ +E+S + E+L A I K T P+ ++LL A DG++ + + I A Sbjct: 1 MKLNIEQSKLAEILETAYLAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V+ G + + A LL D + ++ +IS EN+ I+H L EFP Sbjct: 61 NVETSGQVALPAKLLTDTINNVRG--EISLEVENQA---CIITHNSGKCRLIGGKPDEFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E L++ L+ +E T + +E + L G+ F I + K A +T+GH Sbjct: 116 TLPKGENPIEVNLSAKKLQTALEGTLYCTNGDETKLVLTGVNFKI--DTNKWQAASTNGH 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVK-VSLSESRIHLNIESLSM 237 +LA+ + ++ + VP K++GE+ +ILS S D+SV + LS I ++ + + Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLGELNKILSQSADTSVCNILLSNKTIEFSLPNTKV 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295 RL++GE+P ++IP + + E + A+ RVS ++ + + VK+ L + + Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293 Query: 296 CMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D+G A++S+ + + I N YLLE + +IS+ DE+V R + Sbjct: 294 TLYTEATDIGDAVDSVLMKPTTSHSENISIGLNIDYLLEGLKHIST-----DEIVVRCNK 348 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I +N Y++MP+ I Sbjct: 349 PTQPVIICPMG--------GLLNQLYLVMPVEI 373 >gi|212697387|ref|ZP_03305515.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM 7454] gi|212675579|gb|EEB35186.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM 7454] Length = 375 Score = 252 bits (645), Expect = 5e-65, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 176/387 (45%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ D+ + A + + RK I + + +A + L + +S EI I + + Sbjct: 6 MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVACN 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + ++A+++ +IVRKL D + +++ I S F + +F E Sbjct: 66 VIEEGEMAINANIISNIVRKLPDELIKIEVVD----SKIKIKCNGSKFNILAFDYYEKKD 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K V E+ + LK + +T FA + +E + L GI F + D L VA DG+R Sbjct: 122 LK-VPNVDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFELM--DGYLNFVALDGYR 178 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + +I+PRK++ E RI+ + K+ + I +M Sbjct: 179 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 ++ID + +Y N+I + L V+ L +++R ++++ R +K+++ DK + Sbjct: 238 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDKCLIE 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E + + + I FN +YL+E + + + L SS + Sbjct: 298 S-NSEIGDLKEIIQIQKEGEDVKIAFNARYLIEGVKACDTKS-----IKMNLKSSLNPCL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + +K Y+ +P+R+ Sbjct: 352 IYPNE-----SKYEDEEFTYLALPVRL 373 >gi|312897427|ref|ZP_07756851.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis F0359] gi|310621488|gb|EFQ05024.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis F0359] Length = 372 Score = 252 bits (645), Expect = 6e-65, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 187/390 (47%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ +++ D L ++ K N + +L++A + +EI+A+ ++ I IP Sbjct: 1 MKLKIQKEDFTRALQSVQKVASNKSNNLSSENGLLIKAINDNIEIQANDYDMGIKTTIPG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G + + L ++ R++ I +++ ++++I G + + +F Sbjct: 61 IIEESGEVFLWDPHLSELTRRIASEEIILTKSDSD--SQMSIEGGKLKYRYMTMNTEDFN 118 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E Y SF S +LK+L++ T +A AT+ R G F ++ + L VATD Sbjct: 119 EVEVVEQGYASFTTDSVILKDLIDNTSYACATDTSRPVFTGTFLDVSGKS--LSMVATDT 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLS 236 HRLA+ V + I+P + + E+ R L + D V V ++ + + + ++ Sbjct: 177 HRLALKSVTLDQPSTGDIQAIIPGRLLSEVARQLPT-DVPVVVKITAVRNYLAIQFGNVY 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295 + RLI+G FP+Y+ VIP + + ++ AV+R+SI++ + + ++ +++ Sbjct: 236 IRTRLIEGTFPDYKRVIPTEFSNIITIRRSDFTAAVERISIVAKDAQYNVINFDMADNQI 295 Query: 296 CMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 M +PD G +S+ + P+ I FN +++L+++ + S DE+ F N Sbjct: 296 HMNSQDPDHGVVEDSVECIMSGGNPLSISFNGRFILDVLKHCSKDEI------FLKCREN 349 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I+ KD N +V+ PMR Sbjct: 350 SPMLIQDKD---------TGNCVFVVTPMR 370 >gi|297564486|ref|YP_003683458.1| DNA polymerase III subunit beta [Meiothermus silvanus DSM 9946] gi|296848935|gb|ADH61950.1| DNA polymerase III, beta subunit [Meiothermus silvanus DSM 9946] Length = 366 Score = 252 bits (644), Expect = 6e-65, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 177/388 (45%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + + E LG R+I +++ P+ ++ ++ + L IK + EI++ +PA Sbjct: 1 MEVRIPKRTLAEGLGILERVIPSRSSNPILTYLPIELGNKGLVIKGTNGEIDLEVHLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118 G + V A + IVR L G + +N G + +S + L + + Sbjct: 61 TQGEGHVLVPAQPFFQIVRSLP-GELVEMVIKNVSSAGGGMELSSANFRTQLSTASPEGY 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P L ++ L + + +A +TEE R G+ ++ + L+ AVA+DG Sbjct: 120 PELSFLSQSEE-RLPAAKLAQAITQVRYAASTEEYRAIFRGVQLELSPKGLR--AVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL+ D+ + ++P K+ EI+R+ + V + + E + L E++ MS Sbjct: 177 FRLSRY--DLPMHLVSSRKFVIPAKSADEIVRVFKDTEGEVSLGVGEGSLTLIGEAVRMS 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 V+L++GEFP+Y VIP S E ++ LR+++ RV+++S V L + D+L M Sbjct: 235 VKLMEGEFPDYGRVIPQSFILEATLSAERLRESLKRVAVLSDRNNHRVDLLFAQDRLEMV 294 Query: 299 VDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D G+ E + + P + + FN +YL++ + I V +L S Sbjct: 295 SEG-DYGQGREEIALEAVGEPQLMVAFNAQYLIDALSPIEG------TVRLKLSGPTSPS 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + V++P+R+ Sbjct: 348 VVESVEDP---------GYLAVVVPLRV 366 >gi|218297058|ref|ZP_03497735.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] gi|218242613|gb|EED09150.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] Length = 371 Score = 252 bits (643), Expect = 9e-65, Method: Composition-based stats. Identities = 92/396 (23%), Positives = 184/396 (46%), Gaps = 36/396 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ ++ + E + R+I +++ P+ ++ L A L + S E+++ +PA Sbjct: 1 MRVTLPKNLLAERIALLERVIPSRSSNPLLTYLGLAAEKDALVLFGSNGEVDLEVRLPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-----SFPE 115 ++ G + + + +VR L E LG+E+ ++ G L +PE Sbjct: 61 LEGEGRYLIPSQPFFQLVRSLPGE-----TVELSLGSELALASGRFTTRLALAPMEGYPE 115 Query: 116 SEFPSTKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 FP + E ++ + + L+ + + +A + EE R G+ ++ + A Sbjct: 116 LLFPDLEGGEGAFTQRAQFLAEELQRALSQVRYAASNEEYRAIFRGVQLEFSDRGFR--A 173 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI- 232 VA+DG+RLA+ D+ +VP ++V E++R+L S + V ++L + L + Sbjct: 174 VASDGYRLAL--FDLERPQPFTRKAVVPARSVDELVRVLRSAEGEVVLALGPGTLGLAVR 231 Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 +L M+VRL++GEFP+Y+ VIP + ++ R+A+ RVS+++ + V L Sbjct: 232 QEEGALRMAVRLMEGEFPDYERVIPKEFPLKAALDVEPFREALKRVSVLADKQNHRVDLF 291 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ ++ + D GK E + V PM + +N +YLLE + +S Sbjct: 292 LEEGRVLLSAEG-DYGKGQEEIFVSLEGAPMSLAYNARYLLEALAPLSG------RAELG 344 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ V++P+R+ Sbjct: 345 FSGPTSPTLVRPLEE---------GGYQAVVVPLRV 371 >gi|325846374|ref|ZP_08169343.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] gi|325481558|gb|EGC84598.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis ACS-025-V-Sch4] Length = 370 Score = 252 bits (643), Expect = 1e-64, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 176/387 (45%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ D+ + A + + RK I + + +A + L + +S EI I + + Sbjct: 1 MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVSCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + ++A+++ +IVRKL D + +++ I S F + +F E Sbjct: 61 VIEEGEMAINANIISNIVRKLPDELIKIEVVD----SKIKIKCNGSKFNILAFDYYEKKD 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K V E+ + LK + +T FA + +E + L GI F + D L VA DG+R Sbjct: 117 LK-VPDVDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFELM--DGYLNFVALDGYR 173 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + +I+PRK++ E RI+ + K+ + I +M Sbjct: 174 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 ++ID + +Y N+I + L V+ L +++R ++++ R +K+++ DK + Sbjct: 233 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDKCLIE 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E + + + I FN +YL+E + + + L SS + Sbjct: 293 S-NSEIGDLKEIIQIQKEGEDVKIAFNARYLIEGVKACDTKS-----IKMNLKSSLNPCL 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + +K Y+ +P+R+ Sbjct: 347 IYPNE-----SKYEDEEFTYLALPVRL 368 >gi|325969851|ref|YP_004246042.1| DNA polymerase III subunit beta [Spirochaeta sp. Buddy] gi|324025089|gb|ADY11848.1| DNA polymerase III, beta subunit [Spirochaeta sp. Buddy] Length = 368 Score = 251 bits (642), Expect = 1e-64, Method: Composition-based stats. Identities = 81/384 (21%), Positives = 176/384 (45%), Gaps = 19/384 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + IL + ++ ++N++ ++ +V L+ + L I+A+ ++ + I Sbjct: 1 MKFVCSKEAILTEIIYSMDFTSQRNSLSITSNVYLETYNDTLIIRATDQKLGFSTHIAVQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G TV L +I+R L D + F + + T +S + +F L++ EFP Sbjct: 61 TLKEGKTTVFCEKLLNILRSLPD-TNVEFTVVDGMFTIKPVSQ-NIDFKLRTITPEEFPP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + F + ++ +T FA++ +E RY+L G++ N + VATDG R Sbjct: 119 LETAPEGRYFSVPQKAFSDMANQTMFAISEDETRYFLCGLYLERNASG--MNMVATDGRR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L++ E ++ +I+ K E+ + LS+ + ++++ +++ + I + Sbjct: 177 LSIVERTFEEELPMFTPVIIAPKFFTELKK-LSTDEGTLELCITDQLLFAKIAQRTFYTT 235 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI G++PNY+ VIP S + + ++ A+ RVS++ + + + L +S + +T D Sbjct: 236 LIKGQYPNYRRVIPDSQNYSCTMRIQDMLDALKRVSLLVENKAKRIFLDISEAGVLLTSD 295 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 ++G+A E + Y + NY YLL + + + ++ ++ Sbjct: 296 ESEVGEAKEIIPCQYEGPDSKVSLNYTYLLNPLKAMEGEYF-----SINFTEPTKAMTVK 350 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 + + + ++++MPM+ Sbjct: 351 SE---------SNRDYYHIIMPMQ 365 >gi|146295087|ref|YP_001178858.1| DNA polymerase III, beta subunit [Caldicellulosiruptor saccharolyticus DSM 8903] gi|145408663|gb|ABP65667.1| DNA polymerase III, beta subunit [Caldicellulosiruptor saccharolyticus DSM 8903] Length = 367 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 171/389 (43%), Gaps = 28/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++S + + + V VL++A D ++ + +++ A Sbjct: 1 MRFVVDKSTLQDNISKVIPAAASTKVTSVLECVLIEAED-VVVFTTNDMRMQMQTEFQAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A LL DIV+KL G ++NE V I F L + +FP Sbjct: 60 ILERGAALVKAKLLSDIVKKLPSGDIEIIREDNE----VKIRCQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E A++ ++ +++ FA + +E R G+ F + + L V DGHR Sbjct: 116 MDRKPIDSFCEFAANEFEDAMDKVIFATSKDETRPTFTGVLFEREGDSVNL--VGMDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ ++ S IVP + + +I +I+ ++ V+VS E++ I S S+ V Sbjct: 174 LAICKLK-PIEVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIV 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296 LI G F +Y+NVIP ++ ++ L ++R SI+S +QAV +S Sbjct: 233 TLISGRFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFR 292 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + D G+ E + + I FN KY L+++ + V + S S Sbjct: 293 VMSYSTD-GRYEEDVLCDVEGKDIRIGFNVKYFLDVLKVLDGG------VDIYITSLTSP 345 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + Y+++P+++ Sbjct: 346 SVVKQQGDE---------GYIYLVLPVKM 365 >gi|169351631|ref|ZP_02868569.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552] gi|169291853|gb|EDS73986.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552] Length = 369 Score = 250 bits (640), Expect = 2e-64, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 179/389 (46%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++R +L L + + ++ +PV + +D L + S +I I I Sbjct: 1 MNFKIKRIKLLNALSKTTKAVSIRSPLPVLTGIKFDLHDDCLILTGSDSDITIQTKIIKD 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G + +++ + DIVRK+ + G IS S F L Sbjct: 61 EDLTIYETGGVVLNSRYILDIVRKIDSEYINIQILD---GALTRISSPTSKFDLNGTDIL 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + ++ S VLKN++ +T FA + +E + L GI F L+ AT Sbjct: 118 DYPRIDLSKNGIKIDINSLVLKNIISQTKFAASDKEHKPILTGINFKATNNQLE--CTAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RLA V + + +I +P+K++ EI +I+ KD +++ +S+ ++ ++ Sbjct: 176 DSYRLAKKVVSLNEDV--TFNITIPQKSLDEISKIIE-KDEIIEMYVSDRKVLYVFDNNI 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLIDG FP+ +IP S D EL ++ L A+DRVS++++ + +KL + +++ Sbjct: 233 IQTRLIDGSFPDTNRLIPNSFDYELNIDTHYLLNAIDRVSLLTNEQNNIIKLDMDDNQVL 292 Query: 297 MTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ ++G E ++ +Y P+ I F+ KY+ E I +S + + Sbjct: 293 LSSYMQEIGSVEEILDKAFYKGEPLSISFSSKYVNEAIRAFNSSK-----IRILFTGEMK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ + + + +++P+R Sbjct: 348 PFIIKDYENE---------DVIQLVLPVR 367 >gi|303236008|ref|ZP_07322611.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN] gi|302483881|gb|EFL46873.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN] Length = 374 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 174/385 (45%), Gaps = 17/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T+ + + L R+I K+++P+ + A++ L I AS E+ + ++ Sbjct: 1 MRFTISSTALSSRLLSLSRVINSKSSLPILNCFVFDASNNQLAITASDSEVVVRMSLNLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GS V+ + D V++L + +E ++ +G NF + + E P Sbjct: 61 TLDGNGSFAVNNQNILDAVKELPEQPLTVDVNMDEHMIYISYQNGSYNFPIVNSDEFPIP 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + S ++S +L + + R+ FA A +E+ +NGI+F + E L VATDGH Sbjct: 121 QSLS-DDATSILISSDILVDNITRSLFATAQDELHPVMNGIYFDLTAES--LAVVATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +L V S I+P+K + ++ V V ++ Sbjct: 178 KL-VRNRIFALSSNVPASFILPKKPAALLKSFVAKGGGDVVVRFDSRSAEFTFADGNLIC 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLIDG++P Y +VIP +N ++ ++ +L A+ RV +S Q ++ +++ +L + Sbjct: 237 RLIDGKYPKYNSVIPENNPYQITIDRKSLIGAIRRVLPFASDSSQLIRFHIANGQLDLNA 296 Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ D A ESM Y PM I F +LEI+ N+ S +EV +L + + Sbjct: 297 EDIDFSTSAKESMTCSYEGNPMSIGFKGSSMLEILGNLQS-----EEVNIQLADPSRAGL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + ++ N ++MP+ Sbjct: 352 VVPVEQP------EGENVLMLVMPV 370 >gi|15671984|ref|NP_266158.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis Il1403] gi|281490500|ref|YP_003352480.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis KF147] gi|18202807|sp|Q9CJJ1|DPO3B_LACLA RecName: Full=DNA polymerase III subunit beta gi|12722837|gb|AAK04100.1|AE006239_2 DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis Il1403] gi|281374318|gb|ADA63851.1| DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis KF147] gi|326405599|gb|ADZ62670.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis CV56] Length = 380 Score = 250 bits (639), Expect = 2e-64, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 174/394 (44%), Gaps = 29/394 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ ++ L + I K TIP + ++ + + + S +I I +P Sbjct: 3 KFSINKNAFQNALRITKQAIGSKVTIPALTKLKIEVEENGITLIGSNGQISIKNFLPVDN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GS+ + A ++V +L + ++ + +V ++ G S L+ Sbjct: 63 KDASMLISGTGSVLLEAAFFENVVSQLPE---VTLEFTEKEQKQVLLTSGKSEITLKGLD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E S ++ VLK + T FA++T+E R G+ +L AV Sbjct: 120 SEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLE-TLSTGELKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + +I+P K++ + ++ + +++ +S S++ E+ Sbjct: 179 ATDSHRMSQRLLPLE-DSELKFDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFRNET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291 +S RLI+G +P+ +IP D L + LR +DR +++ + VKL++S Sbjct: 238 ISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVS 297 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + T ++P++G E + + I FN +YL++ + I + EV R Sbjct: 298 GDSVVTTANSPEVGSVHEELTALSKEGNDLAISFNPEYLIDALKVIKA-----PEVRIRF 352 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ ++ ++++S ++ P+R Sbjct: 353 ISNVRPFTLQPRNEES--------GFVQLITPVR 378 >gi|258510497|ref|YP_003183931.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477223|gb|ACV57542.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 370 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 8/349 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ + L RI + + V VL++A G + + A ++ + + AS Sbjct: 1 MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + A L ++VR+L G + +I G ++ L F EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGT-VDVATIAPHHLSASIDVGTTHAELHGFDPEEFPE 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + EL++ L VE +A A E R L G++ + E KL +ATDG Sbjct: 120 LPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVY--VGYEGGKLIWMATDGL 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 RLA + +++ +PR+A+ E+ R+L D+ ++V S S + +++ + Sbjct: 178 RLARVSQTVEREMS--IRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNVQLF 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL GE+P+ V+P RV L +A++RV+I++ V L + L +T Sbjct: 236 GRLYQGEYPDTSRVMPREFAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVLELT 295 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + + G A E + V + + I N +Y+L+ + S + + +V Sbjct: 296 SRSAERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQMQV 344 >gi|224367125|ref|YP_002601288.1| DnaN [Desulfobacterium autotrophicum HRM2] gi|223689841|gb|ACN13124.1| DnaN [Desulfobacterium autotrophicum HRM2] Length = 371 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 86/370 (23%), Positives = 184/370 (49%), Gaps = 13/370 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + +R + E+L I +K + ++ VL++ + + I A+ E G A Sbjct: 1 MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G I ++A LY+I+R+ D EN V I + +++ S FP Sbjct: 61 IESDGIIAINAKKLYEIIREYPDAQVPLNEIENR---WVEIGKDNIQYHIVSSDYENFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFH--INEEDLKLCAVATD 177 T E + E+ S+ K +VE + + +E R Y+ G F +E +L V+TD Sbjct: 118 TPLIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVSTD 177 Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RL + + + ++I+P+K + E+ R L ++ SV + + + + + ++ + Sbjct: 178 SRRLNSFDASYEGELVLPDENVIIPKKGLSELGRFL-DREGSVNIGIKDDHLIVQKQNET 236 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++L++G++P+Y+ V+ ++ ++ + L + R+SI+SS ++V + + ++L Sbjct: 237 LMIKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENELV 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T+ NP++G++ E + + Y + FN +Y ++ +++I+S D V+ + + Sbjct: 297 VTITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINS-----DTVILNVKGAKHP 351 Query: 357 VFIRGKDKDS 366 I+G D D Sbjct: 352 CIIKGLDDDQ 361 >gi|257065522|ref|YP_003151778.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548] gi|256797402|gb|ACV28057.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548] Length = 370 Score = 250 bits (639), Expect = 3e-64, Method: Composition-based stats. Identities = 88/387 (22%), Positives = 185/387 (47%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + D++ + A + + + I + + + + L ++A EI I + A Sbjct: 1 MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G + V A L+ +IVRKL + I +++I S+F L +F + Sbjct: 61 VDEEGEMAVKASLISNIVRKLPNDIVII----ENKNGKISIKCSSSSFNLIAFDYYDKND 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+A+ +LK + +T FA + +E + L GI F + E + + VA DG+R Sbjct: 117 I-NIPETKPIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNM--VALDGYR 173 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +++ ++ + + I+P++++ E RI+S D + K+ +E+ + S +M Sbjct: 174 VSLKKIKLDYPTDYEDSEYIIPKRSLLEWSRIVSD-DLTTKLYKNENDLIFTSGSTTMQC 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 ++ID F +Y+N+I ++ + ++ +L ++DR ++S R +K+ LS + + + Sbjct: 233 KVIDKNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIELSDNVMLIK 292 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E+++V ++I FN +Y+ E + S + + SS + Sbjct: 293 S-NSEIGDVREAIDVEQKGNDLEIAFNARYMQEGVKACDSSK-----IKLNFKSSLNPCL 346 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + N+ + Y+++P+R+ Sbjct: 347 IYPE-----NSSYEDEDFTYLVLPVRL 368 >gi|225016759|ref|ZP_03705951.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum DSM 5476] gi|224950427|gb|EEG31636.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum DSM 5476] Length = 340 Score = 250 bits (638), Expect = 3e-64, Method: Composition-based stats. Identities = 84/357 (23%), Positives = 170/357 (47%), Gaps = 24/357 (6%) Query: 31 CHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF 90 +LL+ + L++ ++ IT I G+I ++A L DI+RK+ D QI+ Sbjct: 2 EGILLECENNNLKLTGYDLDLGITKTIQVETVEPGAIVLNARLFSDILRKMPD-EQITIT 60 Query: 91 KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 + +L T I D+ F + E+P + F +LKN++ +T FA++ Sbjct: 61 SDQKLLTR--IEGIDTEFNILGMSRDEYPDMPAVDDSQGFTAPDYLLKNMINQTLFAISV 118 Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210 + L G F + K+ V+ DG+R+A+ + +I + S +VP K + EI + Sbjct: 119 NDQTPVLTGSLFDL--NSGKMSVVSVDGYRVALRKENIASDTD--VSFVVPGKTLAEITK 174 Query: 211 ILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 +LS ++ +VS+ I I ++ RL++GE+ +Y++ IP + + + + Sbjct: 175 LLSDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVV 234 Query: 270 QAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 Q+++R SI+ + R + VKL + +T ++ +GK + P+ I FN KY Sbjct: 235 QSIERTSIIINDRNKSPVKLVTEGSTINLTCEST-IGKVSDRFEATVEGDPIRIAFNNKY 293 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +++ + + D++ D ++ S + I + D + ++++P+R+ Sbjct: 294 MIDALKHTECDQIYID-----INGPLSPIKIIPTEGD---------DFLFLVLPVRL 336 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 5/183 (2%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69 + ++ I + PV L N G + + + + D S V Sbjct: 105 LKNMINQTLFAISVNDQTPVLTGSLFDLNSGKMSVVSVDGYRVALRKENIASDTDVSFVV 164 Query: 70 SAHLLYDIVRKLQDGAQ-ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 L +I + L D + ++ I+ L ++ S E + Sbjct: 165 PGKTLAEITKLLSDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTT 224 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 + + +ERT + + + L +T G E + Sbjct: 225 RIVADTRTVVQSIERTSIIINDRNKSP----VKLVTEGSTINLTCESTIGKVSDRFEATV 280 Query: 189 VAQ 191 Sbjct: 281 EGD 283 >gi|290968153|ref|ZP_06559698.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str. 28L] gi|290781828|gb|EFD94411.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str. 28L] Length = 371 Score = 250 bits (638), Expect = 4e-64, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 181/388 (46%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+T+ + D+ + L +I + K N + S LL+A ++EI+A+ E+ I +P Sbjct: 1 MKLTLTKEDLNKGLQTIAKIAQSKTNNLQSSNGFLLKALHNVIEIQANDYEMGIKTIVPG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G ++ L +++ KL + K+ + T++ I G F + S+F Sbjct: 61 IIEEPGETFIANPYLIELIHKLPSDSVQLCKKDTD--TKLLIIGGSVKFECATMNISDFN 118 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E Y+ F S +LK+L++ T FA +T R G + + ++ VATD Sbjct: 119 EVEIVESGYAQFTTNSIILKDLIDHTSFACSTNTERPIFMGTHLDVEKN--RINMVATDT 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSM 237 HRLA+ I + +P + + EI R L V ++ + + + ++ + Sbjct: 177 HRLALKTYMSETPITTPIKVTIPSRLLMEISRNLPIDIPEPVTITAVRNYLAIRFSNVYI 236 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLC 296 RLI+GE+P Y+ VIP + + AV+RVS++ + + +K S S +++ Sbjct: 237 KTRLIEGEYPKYERVIPKDFQCTVTTDRAAFTSAVERVSLVVQNPQYNLIKFSFSQNQIK 296 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +PD G + + + I FN KY+L+++ + ++++ + R + S Sbjct: 297 LMSRHPDYGVVEDLVACDMTGEDLTISFNSKYILDLLKHCHEEKII---INLR---TQSP 350 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I+ KD S +V+ PMR Sbjct: 351 VLIKDKDDSS---------CVFVVTPMR 369 >gi|11320915|gb|AAG33953.1|AF197893_1 DNA polymerase III beta subunit [Buchnera aphidicola] Length = 368 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 101/383 (26%), Positives = 195/383 (50%), Gaps = 21/383 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK ++ ++ L R I + + P+ ++L+ +G+L + A+ EIE+ I Sbjct: 1 MKFNIKNKIFIQNLQKINRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS TVS L DI R + I +++I S++ L + P FP Sbjct: 61 QEHISGSTTVSGRKLLDICRHSLHSSDIQIEL---KKNKMHIISDKSHYVLTTLPADNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + S +LK ++E+T F+M +++RYYLNG+ + D L VATDG+ Sbjct: 118 NNDNFNRISKIFIHSHILKEMIEKTQFSMGKQDVRYYLNGMLLE--KIDHSLNMVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+A+ + +I + I++ R+ + E+ ++L+ +K+ + ++ I + IE + Sbjct: 176 RLAIAKTIMQEIKIIQDFKIVITRQGIIELYKLLNISTKLIKILIGKNHIRIYIEQFIFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY+++ + NC L+Q++ R SI+S + V++ + + + + Sbjct: 236 AQLIEGKFPNYESIFLIKKRNGIMFNCQLLKQSLLRASILSHEKFCGVEIHIKNGQFKVL 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 DN + A + N+ Y ++I N Y+L+I++ ISS + ++F L+ S++S+ Sbjct: 296 SDNQEEEIAEDMFNINYIGPEIEISINVYYILDILNAISS-----ENILFFLNHSHNSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381 I + N + YV+M Sbjct: 351 IEAE---------NDASTIYVVM 364 >gi|193214558|ref|YP_001995757.1| DNA polymerase III subunit beta [Chloroherpeton thalassium ATCC 35110] gi|193088035|gb|ACF13310.1| DNA polymerase III, beta subunit [Chloroherpeton thalassium ATCC 35110] Length = 377 Score = 249 bits (637), Expect = 4e-64, Method: Composition-based stats. Identities = 93/390 (23%), Positives = 181/390 (46%), Gaps = 20/390 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + E + + + K T + L+ L + A+ +I +T Sbjct: 1 MKFSSSIKHLSEAVNNTVLALPAKATDARYESINLKLEQNKLSLFATDGDISLTLQTNVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN--ISHGDSNFYLQSFPESEF 118 G+ +++A D++R + D E E +++ I ++ + + E Sbjct: 61 SSDSGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFEE 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S ++ +F ++ L L+++T FA +T+ +R + G+ F I E ++ AV+TDG Sbjct: 121 ESAGSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIR--AVSTDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLS 236 HRL + IIVP + +G + ++ S+D V++S+ + RI + Sbjct: 179 HRLVKITRNHNTGAEGKLKIIVPSRVLGIVRKLF-SEDGDVEISIDANSQRIRFRMGETI 237 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + L+ +PNY+ VIP NDK + +N +NL +V RV SS V+ + + L Sbjct: 238 LLCSLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSS--RGDVRFHVQENSLA 295 Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ +N D G A ES+ Y + + I FN K++ + + ++++ +EV+F+ S Sbjct: 296 VSAENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNA-----EEVIFQFSSPTR 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I K ++ D + ++MP+RI Sbjct: 351 AAIILPKQEE-----DANEDVLMLVMPVRI 375 >gi|307320162|ref|ZP_07599582.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] gi|306894208|gb|EFN24974.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83] Length = 372 Score = 249 bits (637), Expect = 5e-64, Method: Composition-based stats. Identities = 99/389 (25%), Positives = 180/389 (46%), Gaps = 24/389 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +++ L + KNTIP ++ ++ + + ++A+ +IEI A + Sbjct: 2 FKTKKAAFQAALSSVKDAVNSKNTIPHLANIAVERHAEGIRLRATNLDIEIAAPFQAEIG 61 Query: 63 VCGS-ITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPESEFP 119 S T A + IV + DG ISF V I G S + P ++FP Sbjct: 62 ADFSGFTFPAKTVTSIVGAVDDGKDISFEAVMLGNKLEAVTIRSGRSRIKVPILPLADFP 121 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E ++ L SS + +A +TEE R+YLNG+F +E L VATDGH Sbjct: 122 ILDQGELPFAVSLGSSSFIRCLSAVDYACSTEETRHYLNGVFLDASEAG--LMFVATDGH 179 Query: 180 RLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 R+A + D+ I MP +I+PR+ +++ L KD ++ +SLSE RI ++ Sbjct: 180 RMARRLLPSSDVDDPIESMPKVILPRETAPLLVKHLP-KDETLSISLSEFRIRFAAGNIV 238 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L++G +P+Y+ + P S+ R++ L+ A+ RV +++ + AV+ + Sbjct: 239 IISKLVEGTYPDYRRLSPGSHKIRARISGAELKAAIARVLTVNTEKGNAVRFTFDKTSAT 298 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 +T D G+A + + + + N YL E ID++ + +E+ + S Sbjct: 299 LTSRPGDAGEAEDVVTAASDGE-FVVGMNGAYLRETIDHLDT-----EEIELDFNDPASP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +R K + + ++MPMR+ Sbjct: 353 ILLR---------KPGETDTHTIIMPMRV 372 >gi|125622884|ref|YP_001031367.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris MG1363] gi|3913511|sp|O54376|DPO3B_LACLM RecName: Full=DNA polymerase III subunit beta gi|2909714|gb|AAC12964.1| polymerase III subunit DnaN [Lactococcus lactis subsp. cremoris MG1363] gi|124491692|emb|CAL96610.1| beta subunit of DNA polymerase III [Lactococcus lactis subsp. cremoris MG1363] gi|300069622|gb|ADJ59022.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris NZ9000] Length = 380 Score = 249 bits (636), Expect = 5e-64, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 29/394 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ ++ L + I K TIP + ++ + + + S +I I +PA Sbjct: 3 KFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GS+ + A ++V +L + ++ + +V ++ G S L+ Sbjct: 63 KDASMLISGTGSVLLEAAFFENVVSQLPE---VTLEFIEKEQKQVLLTSGKSEITLKGLD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E S ++ VLK + T FA++T+E R G+ +L AV Sbjct: 120 SEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLE-TLSTGELKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + K +I+P K++ + ++ + +++ +S S++ E+ Sbjct: 179 ATDSHRMSQRLLPLEDTDLK-FDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291 +S RLI+G +P+ +IP D L + LR +DR +++ + VKL++S Sbjct: 238 ISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVS 297 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + T ++P++G E + + I FN +YL++ + I + EV R Sbjct: 298 GDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKA-----PEVRIRF 352 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ ++ ++++S ++ P+R Sbjct: 353 ISNVRPFTLQPRNEES--------GFVQLITPVR 378 >gi|261879423|ref|ZP_06005850.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis DSM 17361] gi|270333991|gb|EFA44777.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis DSM 17361] Length = 374 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 89/365 (24%), Positives = 172/365 (47%), Gaps = 13/365 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ + + L ++I KN++P+ L+Q ++G L I AS E + ++ Sbjct: 1 MRFTLSSTALNSRLQTLSKVINNKNSLPILESFLMQVHNGQLTITASDNENMMQASLALD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + D G + +H + D V++L + F+ N EV + + + + + ++P Sbjct: 61 NFDTDGVFAIPSHTILDAVKELPEQP--LTFEVNPDTYEVTVGYQNGQYQFAAQNADDYP 118 Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + V+ + + +L N + RT FA EIR +NG++F + + L VA+DG Sbjct: 119 RNEPLSGDVHVITIDAEMLCNSLSRTLFATDNNEIRPVMNGVYFDLTPDC--LSFVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + S+I+P+K + L+ + V + ++ + + Sbjct: 177 HKL-VRCRNYSIKSDIPASLIMPKKPATLLKNTLAKEHGDVVIKFNDQSAEVKYSEGLLI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G FPNY IP N E+ ++ L A+ RV +S+ Q V+ L++ L ++ Sbjct: 236 CRLIEGVFPNYNAAIPTDNPNEVNIDRKVLLSAIRRVLPFASMSSQLVRFRLNTGSLEVS 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A E + YN PM I F +L+EI++++ + DE+ +L + + Sbjct: 296 SEDLDFATRAKEELVCEYNGQPMQIGFRGDFLMEILNSLDT-----DEIKIQLGDPSRAG 350 Query: 358 FIRGK 362 + Sbjct: 351 VVIPA 355 >gi|212551001|ref|YP_002309318.1| DNA polymerase III beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] gi|212549239|dbj|BAG83907.1| DNA polymerase III beta subunit [Candidatus Azobacteroides pseudotrichonymphae genomovar. CFP2] Length = 374 Score = 249 bits (636), Expect = 6e-64, Method: Composition-based stats. Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK + + +L L ++I KN IP+ L Q +D L I + E IT Sbjct: 1 MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + + G + + L D +R+L D F NE EV I + + + + E+P Sbjct: 61 NAEGEGKFAIPSKNLLDALRELPDQPIT--FVINETNNEVLIYYENGKYSFIAQNGDEYP 118 Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++K + V+ + + L N + T FA A +E+R +N IFF ++ E ++ VA+DG Sbjct: 119 TSKPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPE--RVIFVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + K S I+PRK + IL ++ ++ + IH+ + ++ Sbjct: 177 HKL-VRLKNSRLSGNKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLI 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY VIP + + V+ N A+ RV++ S+ +KL + ++K+ +T Sbjct: 236 SRLIEGHYPNYNAVIPNESPYRIIVDRLNFLNALKRVTLFSNPGNSLIKLQILANKIFIT 295 Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E + Y + I F YL+E+++NISS+ E++F L + Sbjct: 296 AQDIDYSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSN-----EIIFELADVTRAG 350 Query: 358 FIRGKDKDSKNN 369 I K+ + Sbjct: 351 LILPKENKENED 362 >gi|167957209|ref|ZP_02544283.1| DNA polymerase III, beta subunit [candidate division TM7 single-cell isolate TM7c] Length = 365 Score = 249 bits (636), Expect = 7e-64, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 177/388 (45%), Gaps = 28/388 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+++ + + + L I +N +P+ ++LL+ + G L + + EI T I A Sbjct: 1 MKVSITQEKLAKALNLIKDIASSRNELPILNNILLRTDGGRLLVAGTNLEIASTQYIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +D GSIT+ A L+ + V L G K ++I+ G + + E+P Sbjct: 61 IDKHGSITIPARLVSEFVSNLPSGTVELEAKNEH----LHITSGKFSSVINGVVADEYPE 116 Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+ LK + +T A++++ R L G+++H +E L L ATDG Sbjct: 117 LPTIDEKTAIQYEIDVEDLKKAIIQTKIAVSSDVTRAVLTGVYWHNHEGSLYL--AATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA + A+ S I+P + E+ + + ++ + V ES++ + + Sbjct: 175 YRLAEKRL---AKSNDEVSAIIPASTLSEVSKSV-GEEKKITVLFDESQVCFRTGDMEIV 230 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LC 296 RLIDG+FP+Y+ +IP S++ E+ + + + ++ + + ++ S + L Sbjct: 231 SRLIDGKFPDYRQLIPSSSETEIVIKKADFSRVTKIAALFARESGGGITVTASKENSLLS 290 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + ++G+ + + + N +YL E+++ I + DE+ F + S Sbjct: 291 IHSIASELGENTSEASAEIS-ADGQVTLNSRYLTEVLNIIDA-----DEITFSFNGKLSP 344 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR + K + +++MP++ Sbjct: 345 CVIREQVK--------NPDYTHIIMPLK 364 >gi|150020433|ref|YP_001305787.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429] gi|149792954|gb|ABR30402.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429] Length = 366 Score = 248 bits (635), Expect = 8e-64, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 181/385 (47%), Gaps = 26/385 (6%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SV 61 + +S++ + + A + K P+ +L + +I A+ + + + + Sbjct: 4 FLINKSELEKKISVAANAVGSKTVDPILQCLLFSLENET-QIYATDMQTFVISKLNVYEI 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPS 120 + G V A LL +IV+ + D QI F + ++ + G S+F L + E + FP Sbjct: 63 NGNGKFAVDAKLLEEIVKNV-DTEQILFSYD---MGKLVLKSGKSSFNLSTHSEPDKFPQ 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + EE FEL +S+L +++R F +TE LNG+++ L+L VA+DG+R Sbjct: 119 IELEESGIKFELETSILSEMIDRVLFCASTESAMRALNGVYWEAKGGYLRL--VASDGYR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSV 239 LA+ E + I I+ K++ E+ ++ D + V ++ ++ +++ + Sbjct: 177 LALTEQKV--NIDADFDFILSLKSMKELDNLIKQTDEPILTVKFDHKKVWISAGDITVIM 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 R+++ FP+Y+ V+P + N +A+ R+ I+S + V+L ++ + L + Sbjct: 235 RIVEEVFPDYKRVLPKVFKTRIIFNKEEFLEALKRIMIISKRGDEKVRLQINDNILVLNS 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P+ G+ E +++ + I FN K+L E + I +DEVVF S + I Sbjct: 295 QSPEYGEVNEEISIEQEGEDLSINFNPKFLNEAVKKIE-----EDEVVFNFVDDLSPMQI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 KD + Y+++P+R Sbjct: 350 NSKDVNE---------YLYIVLPVR 365 >gi|331004665|ref|ZP_08328127.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] gi|330409592|gb|EGG89032.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167] Length = 369 Score = 248 bits (635), Expect = 9e-64, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 169/385 (43%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ ++ LG + + K + + +L+ A D + + A+ E+ I + Sbjct: 1 MNLKFQKAQLVNALGIVMKAVSTKTSSVILESILITAKDNRVFLDATDTELSIQTEVDGI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + ++A L DIVRK + + + + I + F + EF Sbjct: 61 IVNPGGVVLNAKLFSDIVRKF-ENTDSLIELDVDKEFKSTIRCEQAVFNIMGIDPVEFIP 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +L+ LK ++ +T F+ A +I + G + + K V DGHR Sbjct: 120 MPQIDKDDFIKLSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNIAKF--VTLDGHR 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSV 239 +++ +++ +VP K++ E++RI+ S V + S+ I + + Sbjct: 178 MSIRNIELNGDFENQR-CVVPIKSLQEVMRIIDSDTQKDVSIYFSKDHILFEFDKTLVLS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298 R++DGE+ + ++ D ++ V+ L+ A+++ I+ + + + S L ++ Sbjct: 237 RILDGEYFRIETMLSNDYDTKVTVSRNRLQSAIEQAMILIRENEHKPLIMEIESSLLTLS 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++ +G +N+ + + I FN K+L++ + I DD V ++ S F Sbjct: 297 VNSS-LGFMDAKVNIEKSGNDLKIAFNPKFLVDALKVID-----DDFVNIYFTNAKSPCF 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 IR D+K Y+++P+ Sbjct: 351 IR----------DDKNTYTYLILPV 365 >gi|167755164|ref|ZP_02427291.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402] gi|237733413|ref|ZP_04563894.1| DNA polymerase III subunit beta [Mollicutes bacterium D7] gi|167705214|gb|EDS19793.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402] gi|229383448|gb|EEO33539.1| DNA polymerase III subunit beta [Coprobacillus sp. D7] Length = 369 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 89/389 (22%), Positives = 179/389 (46%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M ++R +L L A + + ++ +PV + D L + S +I I I Sbjct: 1 MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G + +++ + DIVRK+ + G IS S F L Sbjct: 61 EDLTIYQTGGVVLNSRYILDIVRKIDSDEIKIEILD---GALTRISGATSKFDLNGTDVL 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + L + LK+++ +T FA + +E + L GI F + +L AT Sbjct: 118 DYPRIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINF--KAGNRQLECTAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RLA V + + +I +P+K++ EI +I+ +D +++ +S+ ++ ++ Sbjct: 176 DSYRLAKKIVSLDEDV--TFNITIPQKSLDEISKIIE-RDEMIEMYVSDRKVLYVFDNNI 232 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + RLIDG FP+ +IP + D EL ++ L A+DRVS++++ + +KL +S +K+ Sbjct: 233 IQTRLIDGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKVV 292 Query: 297 MTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ ++G E ++ +Y P+ I F+ KY + I + + ++ Sbjct: 293 LSSYMQEIGSVEEILDKSFYKGTPISISFSSKYATDAIRAFN-----EPKIKILFTGEMK 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ +KD + +++P+R Sbjct: 348 PFIIKDFEKD---------DVIQLVLPVR 367 >gi|325108904|ref|YP_004269972.1| DNA polymerase III subunit beta [Planctomyces brasiliensis DSM 5305] gi|324969172|gb|ADY59950.1| DNA polymerase III, beta subunit [Planctomyces brasiliensis DSM 5305] Length = 369 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 75/386 (19%), Positives = 156/386 (40%), Gaps = 24/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M++ ++ + L ++ + + + L +G+ + + EI + IP Sbjct: 1 MELKFKKEILAGALQVVGGVVPSRTPKDILKNTKLVIENGVATLMGTDTEIGMRYQIPEV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G + + L I+R++ ++ + ++ G S F L EFP Sbjct: 61 ETGSSGEVLLPTQRLVSILREVVSPDITLQVSDDL----LEVTAGQSEFRLPVEDPREFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 F + LK ++R FA E RY L G+F ++ L ATD Sbjct: 117 DVAPFNAETYFRVPGHALKQAIKRVIFAADDESTRYALGGVFMELSANGAVL--AATDSR 174 Query: 180 RLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RLAV E+ A+ +++ + ++PRKA+ + R + DS + ++ + S + Sbjct: 175 RLAVVEIPATAEGDVSETITAVIPRKAMTLLERSIDGDDSEILIAPGDHDAVFRSGSCMI 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL++G FPN+++V+P ++ + + V + I++S + V + + Sbjct: 235 YTRLVEGRFPNFRDVVPSNSTVTIDMVAGPFHNLVRQSQIVTSDESRGVDFVFREGSVLL 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D+G++ M + Y+ + I F+ +++ E + + ++ V L Sbjct: 295 KSRAADVGESKVEMPIDYSGDELAIMFDPRFVSEFLRVLDAET----TVNLGLTGGEDPA 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 R + + YV+MP+ Sbjct: 351 VFRSGE-----------DYRYVIMPL 365 >gi|225620184|ref|YP_002721441.1| DNA polymerase III subunit beta [Brachyspira hyodysenteriae WA1] gi|225215003|gb|ACN83737.1| DNA polymerase III beta (beta clamp) subunit [Brachyspira hyodysenteriae WA1] Length = 375 Score = 248 bits (634), Expect = 1e-63, Method: Composition-based stats. Identities = 94/389 (24%), Positives = 186/389 (47%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + DI++ +G ++E K + +VL + +L + A+ + I Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRIILD 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++ V A + I++++ DG +ENE + +G + + +FP Sbjct: 61 DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKIN-IESENGKTKHLIIGMKTDDFP 119 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E + S L + L ++ +T ++A E + L GI F + D K AVATDG Sbjct: 120 AYPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 R+AV E + SII+ K + EIL + + VK+ + +++ + Sbjct: 178 RRMAVIEREFEGVENGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQVGKYDF 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDKLC 296 LI+G++PN++ VIP RVN +L A+ R V +++ VR + + L++S + L Sbjct: 238 VSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLK 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N +MG+++E +++ Y+ + +NY Y+ ++I I S+ V F ++ +S Sbjct: 298 VKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEI-----VTFMVNKDSSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +++ + +Y++MPM I Sbjct: 353 TMVKEIERE---------DYYYIIMPMSI 372 >gi|288928330|ref|ZP_06422177.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317 str. F0108] gi|288331164|gb|EFC69748.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317 str. F0108] Length = 375 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 96/388 (24%), Positives = 181/388 (46%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK ++ S + L + + + K +IP+ + L + DG+L + S E + A+ Sbjct: 1 MKFSISSSALSSKLQNLAKTLSAKPSIPILNNFLFEVVDGVLTLTTSDSETTMKAALKLD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D G TV + + D R+L D + ++ +G NF Q+ E+P Sbjct: 61 ESDSNGRFTVPSRTILDATRELPDQPLHFDINLETMAVQITYQNGVYNFTAQT--AEEYP 118 Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 KE S ++ S+VL N + R+ FA +E+R +NGI+F + E+ L VATDG Sbjct: 119 RNKELAADAASIQMESAVLLNSIVRSIFATGQDELRPIMNGIYFDLKEDG--LAIVATDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + + + K S ++ +K + IL+ + V++ + ++ + +S Sbjct: 177 HKLVKNKNNAIRSDVKR-SFVLAKKPASLLRNILTKDATMVEIKFDDRNAEVHFPNGMLS 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL++G +PNY++VIP N ++ ++ L + RV +S Q ++L + + ++ Sbjct: 236 CRLVEGNYPNYESVIPKDNPNQITLDRKGLVSVLRRVLPFASESSQLIRLHIEQGLIELS 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ESM Y PM+I F L ++++N+ S D+VV +L + + Sbjct: 296 SEDIDFATSAKESMVCDYVGIPMNIGFKGSVLGDVLNNLDS-----DDVVVQLADPSKAA 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++MPM + Sbjct: 351 LVLPA------VQPENEEVLMLIMPMML 372 >gi|302870734|ref|YP_003839370.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis OB47] gi|302573593|gb|ADL41384.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis OB47] Length = 368 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 87/388 (22%), Positives = 172/388 (44%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++ + + + + VL++A D + + ++++ A Sbjct: 1 MRFVVDKDILQDNISKVIFSAASTKVSSILECVLIEAEDS-IIFTTNDMKMQMQTEFKAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L DIV+KL DG +ENE V I F L + +FP Sbjct: 60 ILQRGAALVKAKLFSDIVKKLPDGDVEVIREENE----VKIRSQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++ E +S ++ +++ FA + +E R G+ F EED + V DGHR Sbjct: 116 MEKKPSESFCEFVASEFEDAIDKVIFATSKDETRPTFTGVLFE-REEDEFVNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ ++ S IVP + +I +I+ ++ V+VS E++ I S ++ V Sbjct: 175 LAICKIK-PVEVDGNFSKIVPADNLDDITKIIDIEEAEKVRVSFYENQATFEIGSTTVIV 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 LI G+F +Y++ IP ++ ++ L ++R SI+S + + ++ + T Sbjct: 234 TLISGKFFDYKSAIPTEYSTKISISADVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293 Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V + G+ E + + I FN KY L+++ + E+ + S S Sbjct: 294 VRSMSADGRFEEDVLCSVEGKDIRIGFNVKYFLDVLKVLDG------EINLFITSQTSPS 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D + N Y+++P+++ Sbjct: 348 IVQKPDDE---------NYIYLVLPIKM 366 >gi|283768636|ref|ZP_06341548.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219] gi|283105028|gb|EFC06400.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219] Length = 373 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 177/391 (45%), Gaps = 28/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +++++ + L + + P + ++ L + +S +I I I Sbjct: 1 MKFSIKKNPFVTALSELSHAVSTNSPQPSLRGIKIEVKVDSLVLTSSDADISIQKKIISD 60 Query: 58 ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +V G + + A L +IVRKL F E+ GT + F + Sbjct: 61 EENDLNVQEEGHLLIEAKYLLEIVRKLDSD---HIFVESIDGTYTQFKGHQALFKINGMA 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P+ + EL + +L+E+T FA + +E++ L G+ F + +L Sbjct: 118 VHQYPAIDFNKPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNN--QLVCT 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIE 233 ATD +RLA VD+ +Q +I +P K++ ++ IL + SV S+ S+I + I+ Sbjct: 176 ATDSYRLARKVVDLDSQ--DQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRID 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 ++ R++DG++P +IP EL +N +L +A+DR S + S ++ +L L +D Sbjct: 234 NMIFQSRILDGDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLIND 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + +T + ++G++ E + + +DI F+ Y++E + + ++V+ + Sbjct: 294 QAILTSRSQEIGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVL-----VQFKGM 348 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D S +++P++ Sbjct: 349 MKPFILTSIDDPS---------TIQLVLPLK 370 >gi|319652160|ref|ZP_08006279.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] gi|317396149|gb|EFV76868.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] Length = 375 Score = 248 bits (633), Expect = 1e-63, Method: Composition-based stats. Identities = 85/395 (21%), Positives = 171/395 (43%), Gaps = 33/395 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ ++ + +G I K P+ + L A + L + S +I I IPA Sbjct: 1 MEFKIKNEYFNKAVGEVSSAISAKTPFPILTGIKLTACENHLRLTGSNSDIVIEKVIPAA 60 Query: 60 ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + GS+ V++ L ++++KL I V I + Y+ F Sbjct: 61 DEGAELEIVKTGSVVVTSRYLTELIKKLPGDIHIKL----NEKHNVTIISDEIITYINGF 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P ++P E + + +++S L ++++T FA + + R L G+ + E Sbjct: 117 PAEQYPKLPEFDNSHEIQISSVKLSAIIKQTVFAASKNDTRPVLTGVHMIVKEN--HFSC 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232 ATD HRLA + I + A S IVP ++ E+L++L+ ++S V++ SES + Sbjct: 175 AATDSHRLAFLQTSIAS--ASKGSFIVPGSSLKELLKLLAHQEESEVQIFSSESYLVFKT 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291 +S+ + RLI+G++P+ +IP ++++ L + +DR + + + V L + Sbjct: 233 KSIMLCSRLIEGKYPDVTGLIPNEAKTVIKLDAKKLLKGIDRACLFALEWKNNNVLLEIK 292 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ + +GK E+ + + I + +L++ + I ++ V+ Sbjct: 293 EGALKISSVSSAIGKIEETQPLLEITGERELSISLDGNFLMDALKAIQ-----EEHVLLS 347 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S V I+ +S ++ P+R Sbjct: 348 FSGSMKPVIIKPVSGES---------YIQLVSPVR 373 >gi|116510845|ref|YP_808061.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris SK11] gi|116106499|gb|ABJ71639.1| DNA polymerase III, beta subunit [Lactococcus lactis subsp. cremoris SK11] Length = 380 Score = 247 bits (632), Expect = 2e-63, Method: Composition-based stats. Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 29/394 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 K ++ ++ L + I K TIP + ++ + + + S +I I +PA Sbjct: 3 KFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GS+ + A ++V +L + ++ + +V ++ G S L+ Sbjct: 63 KDASMLISGTGSVLLEAAFFENVVSQLPE---VTLDFIEKEQKQVLLTSGKSEITLKGLD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +P +E S ++ VLK + T FA++T+E R G+ +L AV Sbjct: 120 SEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLE-TLSTGELKAV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ + + K +I+P K++ + ++ + +++ +S S++ E+ Sbjct: 179 ATDSHRMSQRLLPLEDTDLK-FDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNET 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291 +S RLI+G +P+ +IP D L + LR +DR +++ + VKL++S Sbjct: 238 ISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTIMTTNGTVKLTVS 297 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 D + T ++P++G E + + I FN +YL++ + I + EV R Sbjct: 298 GDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKA-----PEVRIRF 352 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ ++ ++++S ++ P+R Sbjct: 353 ISNIRPFTLQPRNEES--------GFVQLITPVR 378 >gi|320527129|ref|ZP_08028316.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204] gi|320132457|gb|EFW25000.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204] Length = 373 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/391 (20%), Positives = 178/391 (45%), Gaps = 28/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T+ +++ L R I + + + D + + S +I I I A+ Sbjct: 1 MNLTISKTEFYNTLQLVSRAISPNSPQTSLRGLKIDVKDNSMVVTGSDADISIQHTITAN 60 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + + L +IVRK+ D +I + G+ S + F + Sbjct: 61 DKNKLNILEEGSILIESKYLLEIVRKI-DSEEIHVEIID--GSLTKFSGNSAVFKINGMN 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P+ + S ++SSV+ +++E+T FA + +E + L G+ FH++ D LC Sbjct: 118 PHDYPTIDFSKPANSVVISSSVMSDIIEQTTFATSIKETKPVLTGVNFHLS--DNTLCCT 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIE 233 ATD +RLA + + ++ +P K++ E+ + D +++ L++ + E Sbjct: 176 ATDSYRLAKKTIPFTSS--DNFNVTIPSKSLNEVKSTMIGDDSGEIQIYLNDKKAQFVNE 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + RL+DG +P +IP L +N ++L A+DR + + + + +L S+D Sbjct: 234 DMILQTRLLDGGYPETDRLIPKEFKYTLEINRSDLIHAIDRTTFIKTDNMTINRLQCSTD 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ +T + ++G++ E++ + P+DI F+ Y++E +I D+ + Sbjct: 294 EVVLTNKSQEIGESHETLVGTFTGEPLDISFSGNYVMEAARSIRGDK-----LKIEFVGE 348 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + +++P+R Sbjct: 349 MRPFILSSEEDPTI---------LQLVLPVR 370 >gi|167957124|ref|ZP_02544198.1| DNA polymerase III, beta subunit [candidate division TM7 single-cell isolate TM7c] Length = 366 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 82/388 (21%), Positives = 159/388 (40%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++V + + + L +A RI + +P+ ++LL+ + L + A E+ I Sbjct: 1 MELSVLQENFTKALNNASRIATSRTQLPILNNILLRTDGNRLLVAAMNMEVATMHYIGTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A L+ + V L + G + I G + + +FP Sbjct: 61 IIKPGSITVPARLITEFVSSLPKEKIDLKVE----GEHLIIKAGKYSSVINGIAADDFPE 116 Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + E+A K V +T A + + R L G++++ E +L L TDG Sbjct: 117 LPAIDENTAIQYEIAPHDFKQAVNQTIIAASNDAARPILTGVYWYSFEGNLYL--AGTDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RLA + + I+P ++ E LR+++ S V + ES++ I+ ++ Sbjct: 175 YRLAERCL---VSTESEVAAIIPTNSLQEALRVINDNTSQVTILFDESQVRFKIDDTEIT 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLC 296 +LIDG FP Y+ +IP SN+ + + + + + S +V ++ +L Sbjct: 232 SQLIDGNFPPYRQLIPVSNETNVIIKKDDFMRITKIAGLFSRDSGGSVTITADSEKGELS 291 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + ++G+ I N +Y+ E + I D V F + Sbjct: 292 LHSVASELGENTSEATAKIEGGG-TITLNSRYISEALSVIDG-----DTVKFSFSGKLAP 345 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +K N +++MP++ Sbjct: 346 TVFESNEK--------NANYKHIIMPLK 365 >gi|327542303|gb|EGF28790.1| DNA polymerase III, beta subunit [Rhodopirellula baltica WH47] Length = 440 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 169/389 (43%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKIT +R + A I ++ + +V + A + + A+ E+ I + Sbjct: 69 MKITCQRDILANAFVLAASIAPSRSPKEILQNVKVTAAGDKITLMATDQEVGIRLDVSEG 128 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+ G+ + I+R+ D E + IS S F L EF Sbjct: 129 IEVETEGTALLPVARTGPILRESNDETITIETDEAG----IKISGSRSKFRLPGNNPDEF 184 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E + ++++ + ++ RT FA +E RY L G+ + E + AV TDG Sbjct: 185 PSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALGGVLLEMEENS--VIAVGTDG 242 Query: 179 HRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 RLA E + + IVP +A+G I R LS KD V+V+ + + + Sbjct: 243 RRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEKDDFVEVASRGNDLLIRTPRA 302 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +S RL++G +PN++ V+P N ++ V L A+ + +I++ + + V + + Sbjct: 303 VISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQAAIVTDLDSRGVDFTFADGT 362 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + D+G++ + + Y+ + + +++YL + + ++ VV ++S+ Sbjct: 363 LKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCKVMDNE----STVVMEIESAK 418 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S ++ D YV+MPM Sbjct: 419 SPALLQTDD-----------GYAYVIMPM 436 >gi|296125981|ref|YP_003633233.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563] gi|296017797|gb|ADG71034.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563] Length = 375 Score = 247 bits (631), Expect = 2e-63, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 184/389 (47%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + DI++ +G ++E K + +VL +L + A+ + I Sbjct: 1 MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTATDGSVWARSRIILD 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++ V A + I++++ DG +ENE + +G + + +FP Sbjct: 61 DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKIN-IESENGKTKHLIIGMKTDDFP 119 Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E S L + L ++ +T ++A E + L GI F + D K AVATDG Sbjct: 120 AYPESNGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 R+AV E + SII+ K + EIL + + VK+ + +++ I Sbjct: 178 RRMAVIEREFEGVENGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQIGKYDF 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDKLC 296 LI+G++PN++ VIP RVN +L A+ R V +++ VR + + L++S + L Sbjct: 238 VSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLK 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N +MG+++E +++ Y+ + +NY Y+ ++I I S+ V F ++ +S Sbjct: 298 VKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEI-----VTFMVNKDSSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +++ + +Y++MPM I Sbjct: 353 TMVKEIERE---------DYYYIIMPMSI 372 >gi|291558312|emb|CBL35429.1| DNA polymerase III, beta subunit [Eubacterium siraeum V10Sc8a] Length = 365 Score = 247 bits (631), Expect = 3e-63, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 186/385 (48%), Gaps = 26/385 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K +V+++DIL+ L + K+ I + L L + E+ I I Sbjct: 3 KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTIDVEG 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G + +++ L+ DIVRK+ G I F E E ++N+ D + + E+P Sbjct: 63 ESDGVLVLNSRLICDIVRKMPSG--IIRFDEYEP-LKLNLMCEDITYSIMGINSEEYPVL 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E SFE++ +LK+++ +T +A+AT + + L G F I +L + +V DG R+ Sbjct: 120 PELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV--DGIRI 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240 A+ + ++ + +VP K + E+LR+LS +S + VS+ ++ +I+ ++ R Sbjct: 178 AIRKESLLHED---FDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299 L++G+F +Y +I ++ E VN L + VDR ++ + +I+ V + S + L + Sbjct: 235 LLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +GK + + Y+ I FN +Y+L+ + N D+V V N+++ I Sbjct: 295 ETA-IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQ------NTALKI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + DS +++ P+R Sbjct: 348 VPLEGDS---------FTFIVSPVR 363 >gi|291531950|emb|CBK97535.1| DNA polymerase III, beta subunit [Eubacterium siraeum 70/3] Length = 365 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 93/385 (24%), Positives = 183/385 (47%), Gaps = 26/385 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K +V+++DIL+ L + K+ I + L L + E+ I I Sbjct: 3 KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTIDVEG 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G + +++ L+ DIVRK+ G E ++N+ D + + E+P Sbjct: 63 ESDGVLVLNSRLICDIVRKMPSGVIRFDEYE---PLKLNLMCEDITYSIMGINSEEYPVL 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E SFE++ +LK+++ +T +A+AT + + L G F I +L + +V DG R+ Sbjct: 120 PELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV--DGIRI 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240 A+ + ++ + +VP K + E+LR+LS +S + VS+ ++ +I+ ++ R Sbjct: 178 AIRKESLLHED---FDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299 L++G+F +Y +I ++ E VN L + VDR ++ + +I+ V + S + L + Sbjct: 235 LLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +GK + + Y+ I FN +Y+L+ + N D+V V N+++ I Sbjct: 295 ETA-IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQ------NTALKI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + DS +++ P+R Sbjct: 348 VPLEGDS---------FTFIVSPVR 363 >gi|254230348|ref|ZP_04923734.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25] gi|151937140|gb|EDN56012.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25] Length = 256 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 85/273 (31%), Positives = 163/273 (59%), Gaps = 17/273 (6%) Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P ++FP+ ++ + L+ + L+ L+++T F+MA +++RYYLNG+ F I + L Sbjct: 1 LPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLR 58 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +VATDGHR+AV++ + A A+ IIVPRK V E+++++ + + V + + S + + Sbjct: 59 SVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEV 117 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + + +L+DG FP+Y+ V+P S +K L +C LRQA R +I+S+ + + V+++L+ Sbjct: 118 NNFTFTSKLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAD 177 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++ +T +NP+ +A E ++V + ++I FN Y+L++++ + + V + Sbjct: 178 TEMRITANNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSD 232 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +N+S I D DS A YV+MP+R+ Sbjct: 233 ANASALIENADDDS---------AMYVVMPIRL 256 >gi|167751446|ref|ZP_02423573.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702] gi|167655692|gb|EDR99821.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702] Length = 365 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 94/385 (24%), Positives = 183/385 (47%), Gaps = 26/385 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K +V+++DIL+ L + K+ I + L L + E+ I I Sbjct: 3 KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTIDVEG 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G + +++ L+ DIVRK+ G E ++N+ D + + E+P Sbjct: 63 ESDGVLVLNSRLICDIVRKMPSGVIRFDEYE---PLKLNLMCEDITYSIMGINSEEYPVL 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E SFE++ +LK+++ +T +A+AT + + L G F I +L + +V DG R+ Sbjct: 120 PELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV--DGIRI 177 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240 A+ + ++ + +VP K + E+LR+LS +S + VS+ ++ +I+ ++ R Sbjct: 178 AIRKESLLHED---FDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299 L++G+F NY +I ++ E VN L + VDR ++ + +I+ V + S + L + Sbjct: 235 LLEGDFFNYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + +GK + + Y+ I FN +Y+L+ + N D+V V N+++ I Sbjct: 295 ETA-IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQ------NTALKI 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + DS +++ P+R Sbjct: 348 VPLEGDS---------FTFIVSPVR 363 >gi|32476252|ref|NP_869246.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1] gi|32446796|emb|CAD76632.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1] Length = 444 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 169/389 (43%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MKIT +R + A I ++ + +V + A + + A+ E+ I + Sbjct: 73 MKITCQRDILANAFVLAASIAPSRSPKEILQNVKVTAAGDKITLMATDQEVGIRLDVSEG 132 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+ G+ + I+R+ D E + IS S F L EF Sbjct: 133 IEVETEGTALLPVARTGPILRESNDETITIETDEAG----IKISGSRSKFRLPGNNPDEF 188 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 PS E + ++++ + ++ RT FA +E RY L G+ + E + AV TDG Sbjct: 189 PSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALGGVLLEMEENS--VIAVGTDG 246 Query: 179 HRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 RLA E + + IVP +A+G I R LS KD V+V+ + + + Sbjct: 247 RRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEKDDFVEVASRGNDLLIRTPRA 306 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +S RL++G +PN++ V+P N ++ V L A+ + +I++ + + V + + Sbjct: 307 VISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQAAIVTDLDSRGVDFTFADGT 366 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + D+G++ + + Y+ + + +++YL + + ++ VV ++S+ Sbjct: 367 LKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCKVMDNE----STVVMEIESAK 422 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S ++ D YV+MPM Sbjct: 423 SPALLQTDD-----------GYAYVIMPM 440 >gi|260891932|ref|YP_003238029.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] gi|260864073|gb|ACX51179.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] Length = 372 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 75/393 (19%), Positives = 166/393 (42%), Gaps = 30/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M+ T+ + D+ +L R I K ++P +L + L A+ ++++T +P Sbjct: 1 MQFTISQEDLERVLSVCLRCIPSKPSMPQLAGILFRKEGSKLTATATDLDVQVTVELPRV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G + + A +D+VR+L + + + +V +S+ L EFP Sbjct: 61 NLEEEGELWLPAKETFDLVRRLPEDVLVELRQAG--SNQVLLSYPGGEARLAGMDPGEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E+ E L + + +A A +++R G+ + + +L ATDGH Sbjct: 119 LI-EQSVEEVLEFPGEGLLDALRYVLYAAAPDDLRPIFTGVEISYSSPEGELTFAATDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGE---ILRILSSKDSSVKVSLSESRIHLNIESLS 236 RLAV + ++ S +VP + + E + R+L + ++ L ++ + E + Sbjct: 178 RLAVFRR---GEEPRLESRVVPAQYLKEVLVLGRLL--GEEPKRIRLGKTTASFHWEEVE 232 Query: 237 MSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL---SS 292 + RLI+G+FP++Q +P L + L ++R +++ + V Sbjct: 233 LYSRLIEGKFPDWQQALPKDPPATSLSLTVGTLLSCLERARVIARAQASGVPAVFLVKEG 292 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + + + + G+ E ++ + + FN YL+E + + + EV+ L Sbjct: 293 EGVRIEARS-EAGEFKEHVDGRAEGEDLTLAFNADYLMEALRVLDREA----EVLVSLYG 347 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + I + +++P+R+ Sbjct: 348 PMAPIIITS---------GSCKEYLALVLPLRL 371 >gi|307699829|ref|ZP_07636880.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16] gi|307614867|gb|EFN94085.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16] Length = 381 Score = 247 bits (630), Expect = 3e-63, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 168/392 (42%), Gaps = 22/392 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M++ + R + E + + R I ++ +PV V + A +E + + + P Sbjct: 1 MELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++ V LL + R L + +IS ++I+ G + L PE ++P Sbjct: 61 ELITEGTVVVDGKLLSETARALPN--KISEVSFKTEDNYLHITCGSFHQQLLVMPEEDYP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + V + V + + + A + +E L GI I E KLC +ATD + Sbjct: 119 QLPQLPQVVGQV-DAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDRY 175 Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIE 233 R+A+ E+ A ++ ++V K + + + ++S S+ +++ + L+ Sbjct: 176 RMALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAG 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292 + ++ DG +P+ + + P + V ++ A RV+I+S ++ Q + LS + Sbjct: 235 GRLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQ 294 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L + A +++ V N + + FN + L+E + + + V Sbjct: 295 GTLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLSVVD-----EPYVRLSFKD 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ ++ D+ ++ Y++MP+R Sbjct: 350 ETKPVIITGQKEE---TGDDSLDFQYLIMPIR 378 >gi|317050201|ref|YP_004111317.1| DNA polymerase III subunit beta [Desulfurispirillum indicum S5] gi|316945285|gb|ADU64761.1| DNA polymerase III, beta subunit [Desulfurispirillum indicum S5] Length = 368 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ +E+ D+ + L A I KN T + ++ ++A L+ I ++ I +T I A Sbjct: 1 MRFEIEKKDLEKTLFKAHGICNSKNITNNILTNIQIKAESDLIRINSTDRNISLTSTISA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS+ V+ Y+ +++L + I +N + I+ + F L + + FP Sbjct: 61 NIQETGSVLVNGKKFYEAIKELPNNIVIIERVDNT----LTIACQKTQFKLFTSDPTLFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + L++++ +T F + ++ +NG + K+ VATDGH Sbjct: 117 ELDLQLGESPVVIPALKLRDILIKTFFCSTETQTKFGVNGTLLKLQGN--KITTVATDGH 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL ++ + Q + +++PR ++ EI+++L+ D +KV + E+ I + ++ Sbjct: 175 RLGLSAISTDQQYSDNE-VVIPRNSLNEIVKVLTDVDEDIKVHIDENAIVFATQQDTIKT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 L+ +FP Y VIP L+++ +++ + R+SI + ++ VK S+ L T+ Sbjct: 234 NLLKKKFPPYGKVIPDECPVSLQISTKKIKETLKRLSIFVNENVKIVKFSVEDKILVATI 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + G A E + + Y +I +N + EII++I S+ L+ S S I Sbjct: 294 QSQEHGNAREVIEIEYEGNNFEIGYNVRLFNEIINHIESETF-----TLALNESLSVSVI 348 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 R D YVLMP R+ Sbjct: 349 RPGDN------KKDEQTLYVLMPNRL 368 >gi|212694909|ref|ZP_03303037.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855] gi|212662469|gb|EEB23043.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855] Length = 340 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 86/338 (25%), Positives = 162/338 (47%), Gaps = 13/338 (3%) Query: 35 LQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN 93 ++ DG L + AS E ++ ++ D G VS+ + + ++++ + F N Sbjct: 1 MELTDGTLSLTASDSETTLSTSLEVNESDGDGRFAVSSKTILEALKEIPEQP--LTFLVN 58 Query: 94 ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEE 152 E+ + + + + L E+P + + V+ + R+ FA A +E Sbjct: 59 TENLEITVQYQNGKYSLMGQNADEYPQAPALGANAVHVTMGAPVMLAGINRSLFATADDE 118 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 +R +NGI+F I ED+ VA+DGH+L V VA + + I+P+K + +L Sbjct: 119 LRPVMNGIYFDITTEDITF--VASDGHKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLL 175 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 + V++ + +E+ SM RLI+G +PNY +VIP N + ++ L A+ Sbjct: 176 PKEQGDVQIDFDDRNATFTLENYSMICRLIEGRYPNYNSVIPQDNPHKATIDRMTLISAL 235 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLE 331 RVS+ SS +KL LS +++ ++ + D A E++ Y PM I F +L++ Sbjct: 236 RRVSVFSSQASSLIKLRLSENQIQISAQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLID 295 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 I++NIS+ E++F L + + I +++ + Sbjct: 296 ILNNISAQ-----EILFELADPSRAGVIVPVEQEENED 328 >gi|328476246|gb|EGF46930.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus MTCC 5462] Length = 334 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 74/350 (21%), Positives = 151/350 (43%), Gaps = 29/350 (8%) Query: 46 ASGPEIEITGAIPA-------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE 98 S +I I I A + G I + A +IV++L + K+N + Sbjct: 1 GSDADISIESTINAADESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQ 57 Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 I+ G S F ++ + +P E + + + VL+ L+ +T A++T+E R L Sbjct: 58 TVITSGASEFTIRGEDANNYPRLPEITADEALTVPADVLRQLINQTVIAVSTQESRPILT 117 Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218 G+ I + +L AVATD HRL+ + + A II+P K++ E+ R+L + Sbjct: 118 GVHLTITGD--QLVAVATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTK 175 Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 +++ ++E+++ + RL++G +P+ +IP S++ + + L ++ R S++ Sbjct: 176 IEIRIAENQVLFVFGQTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLL 235 Query: 279 SSVRIQAV---KLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIID 334 S V L++ K + ++PD+G E ++ ++I FN Y+ + + Sbjct: 236 SHESSNNVVRLVLNIGEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQ 295 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D + + + K ++ P+R Sbjct: 296 GFGQTAIEVD-----FTAPLRPFTLVPTED--------KEKFIQLITPVR 332 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 9/163 (5%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP-EIEITG-AIPAS 60 +TV + +L+ + + + P+ V L L A+ + +PA+ Sbjct: 89 LTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGDQLVAVATDSHRLSQRTLTLPAA 148 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY---LQSFPESE 117 ++ I + L ++ R L G ++ + +V G + FY L+ Sbjct: 149 SNIDYDIIIPGKSLTELSRML--GDDVTKIEIRIAENQVLFVFGQTAFYSRLLEGNYPDT 206 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLN 158 + A ++L ++ + + + +R LN Sbjct: 207 SRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLN 249 >gi|308234058|ref|ZP_07664795.1| DNA polymerase III, beta subunit [Atopobium vaginae DSM 15829] gi|328943455|ref|ZP_08240920.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM 15829] gi|327491424|gb|EGF23198.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM 15829] Length = 369 Score = 246 bits (629), Expect = 4e-63, Method: Composition-based stats. Identities = 86/387 (22%), Positives = 170/387 (43%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V + + + + R + + T+PV + +QA L ++ ++ I + A+ Sbjct: 1 MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G V L +V+ L D T+ ++ S + L + ++FP Sbjct: 61 VEEEGQTVVPGLFLSKLVKNLPDAPITMETTP----TQAILTCLKSTYELSTLDAADFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S EL S +L ++VER + + L GI E KL ATD HR Sbjct: 117 FPDITPSQSIELPSDLLNDMVERVYRVTKEDISNPILGGITLVAQEN--KLTMYATDSHR 174 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + + + A I + I+P E+L + + +++ L+++++ + E+ + Sbjct: 175 LVIIDTNTETASIDSEFTAIIPAVCFHELLNLPTITP-RLQIGLTDNQVIFSFENTTYVS 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LCM 297 I+G FPNY+N+ P + + +L VN L QA+ RV+++++ + V + + + Sbjct: 234 LKIEGMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D+ + G + E + P+ NY+++LE + DE+ F + S + Sbjct: 294 KADSSEFGASKEEFSATIEGNPISFSMNYQFILECCRS----TTHADEMTFEIVDSFQPI 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I+ +N +L+P+R Sbjct: 350 VIKS---------FGTMNYQCLLIPLR 367 >gi|87308269|ref|ZP_01090410.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645] gi|87288826|gb|EAQ80719.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645] Length = 372 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 82/389 (21%), Positives = 171/389 (43%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKIT +R + A + ++ P+ ++ L A + + A+ E+ + + Sbjct: 1 MKITFDREQFQQAFQTAAAVAPSRSPKPILQNIKLDATESGAIMMATDMEVGVRIEVSGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ GSI + I+R++ D +E + S F L + EFP Sbjct: 61 EVEAPGSIVLPVQRFGSILREVSDEKLRITREEGG----TIVQGERSKFTLSTENPEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + EL++ LK L+ RT FA +E RY L GI + + + AVATDG Sbjct: 117 AVHSFTETKYHELSARTLKELIRRTLFAADSESGRYALGGILLEMEADQVT--AVATDGR 174 Query: 180 RLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 RL+ VA A IVP +A+ I + L++ +++V+++ + + + + + Sbjct: 175 RLSKMSGPAVAIEGHGSASEVMTIVPARAMQLIEKALTNLEATVQIAARSNDVLVKVGAA 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKE-LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ RL++G FP +++V+P D + + + A+ + +I++S + + + Sbjct: 235 TIYARLVEGRFPKWRDVLPEKRDAKAIELTVGPAFAALRQAAIVASDESRGIDFTFGGGS 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++ ++G++ + Y+ P++I +++Y+ + + + + L ++ Sbjct: 295 AVLSSTTAEVGQSHVEFPIAYDGDPVEITMDHRYVADFYKVLDGER----QFTLNLQDAD 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S+ D N YV+MP+ Sbjct: 351 SAALFSTDD-----------NYDYVVMPL 368 >gi|325300579|ref|YP_004260496.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] gi|324320132|gb|ADY38023.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM 18170] Length = 373 Score = 246 bits (628), Expect = 5e-63, Method: Composition-based stats. Identities = 95/388 (24%), Positives = 180/388 (46%), Gaps = 20/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59 MK TV + + L +++ K +P+ LL+ + LE+ AS E G++ Sbjct: 1 MKFTVSSTAMANKLATMAKVMNNKPALPILSTFLLEVKEDAPLEVTASDLECVWHGSLDI 60 Query: 60 SVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G + ++A L D VR L + + + V I + + ++ + F E+ Sbjct: 61 TGQEGAGKVCITASTLLDAVRNLPEQPITFTIDDKDKS--VTIHYLNGHYGMAGFGSDEY 118 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + E F++ ++ L N ++++ FA++ + +R + GI + I+ D KL A+DG Sbjct: 119 PMMQN-ECDIRFDMDAATLCNSIDQSLFAVSYDALRPVMTGINYTIS--DGKLECAASDG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L + A A ++ KA + +L K+ SV+V + I ++ S S Sbjct: 176 HKLVRNTYPL-AGNADDCRFVLSAKAAKIVKLLLHKKEGSVEVEYNGRNIVFKTDTDSFS 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY ++P +++KE ++ L A+ RV + + + + LS S L +T Sbjct: 235 TRLIEGTYPNYNAIVPTNSNKEATIDRQALLSAIRRVGVFAERTSRQLVLSFSGMALLLT 294 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ Y + I F+ + L I++N+ + EV FR+ + + Sbjct: 295 GHDFDNATSAEETVFCTYQGDEVRIAFHAENLKMILENMDTA-----EVRFRMSEACRAA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I D ++ +LMPM + Sbjct: 350 IIEPVSGDVQSEH------LALLMPMML 371 >gi|323939115|gb|EGB35329.1| DNA polymerase III beta subunit protein [Escherichia coli E482] Length = 232 Score = 246 bits (628), Expect = 6e-63, Method: Composition-based stats. Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 17/249 (6%) Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 +K L+E T F+MA +++RYYLNG+ F E+L+ VATDGHRLAV + I Q Sbjct: 1 MKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVCSMPI-GQSLPSH 57 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 S+IVPRK V E++R+L D+ ++V + + I ++ + +L+DG FP+Y+ V+P + Sbjct: 58 SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKN 117 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 DK L C L+QA R +I+S+ + + V+L +S ++L +T +NP+ +A E ++V Y+ Sbjct: 118 PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYS 177 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 M+I FN Y+L++++ + + V L S SSV I +A Sbjct: 178 GAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQIEDA---------ASQSA 223 Query: 377 FYVLMPMRI 385 YV+MPMR+ Sbjct: 224 AYVVMPMRL 232 >gi|222528060|ref|YP_002571942.1| DNA polymerase III subunit beta [Caldicellulosiruptor bescii DSM 6725] gi|222454907|gb|ACM59169.1| DNA polymerase III, beta subunit [Caldicellulosiruptor bescii DSM 6725] Length = 368 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 170/389 (43%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++ + + + + VL++A D + + ++++ A Sbjct: 1 MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAED-RIIFTTNDMKMQMQTEFEAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS + A LL DIV+KL G +ENE V I F L + +FP Sbjct: 60 ILERGSALLKAKLLSDIVKKLPSGDVEVIREENE----VKIRSQKIEFRLPTLEPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +S + V++ FA + +E R G+ F E+D + V DGHR Sbjct: 116 MDRKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFE-KEDDDFVNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ VA + S IVP + + +I +I+ ++ V+VS E++ I S ++ + Sbjct: 175 LAICKIKPVA-VEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVIL 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296 LI G+F +Y++ IP ++ ++ L ++R SI+S IQAV + Sbjct: 234 TLISGKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + D G+ E + + + FN KY L+++ + E+ + S S Sbjct: 294 VKSVSAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D N Y+++P+++ Sbjct: 347 SIVQKPDDP---------NYIYLVLPIKM 366 >gi|303233435|ref|ZP_07320103.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4] gi|302480443|gb|EFL43535.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4] Length = 369 Score = 245 bits (627), Expect = 6e-63, Method: Composition-based stats. Identities = 89/387 (22%), Positives = 178/387 (45%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +V ++ + L CR + +NT+ + V + A++G L ++ + ++ I AI A+ Sbjct: 1 MKFSVSQTSFNQALSIVCRGLSSQNTMAILAGVYIHASEGTLTLQTTDLKVSIKHAISAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ VS LL IV+ L D A + T+ ++ ++F L + +FP Sbjct: 61 VEEEGSVVVSGALLLKIVKNLPDAAITLTSTD----TQAQLTCQKASFTLATLNPEDFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 EL +S+L ++V++ + L+GI +E KL ATD HR Sbjct: 117 FPVLNPNQVVELPTSLLTSMVDKVFRVTKDDIANPILSGITLVAHEN--KLSMYATDSHR 174 Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + + + + I+P A E+L + S D ++ + L +++I + E+ + Sbjct: 175 LVIIDTSTETSSLTEEFNAIIPATAFHELLSLPSLTD-TITLGLCDNQIVFSCENTTFVT 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCM 297 I+G FPN++N+ P + +L N T L + RV+++++ V ++ L + Sbjct: 234 LKIEGMFPNFKNLFPTTCATKLTCNPTELSAVIRRVALVTTNSDLGVVFDINPQTQTLTL 293 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D+ + G + E V+ + NY+++ E + ++ DE+ F + + + Sbjct: 294 KADSVEYGTSQEEFAVHIEGASVQFSMNYQFITECTKSCTNK----DEITFEIVDNMQPI 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +N +L+P+R Sbjct: 350 VVKS---------FGTINYQCLLIPLR 367 >gi|320449108|ref|YP_004201204.1| DNA polymerase III subunit beta [Thermus scotoductus SA-01] gi|320149277|gb|ADW20655.1| DNA polymerase III, subunit beta [Thermus scotoductus SA-01] Length = 371 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 90/395 (22%), Positives = 172/395 (43%), Gaps = 34/395 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V ++ + E + R+I +++ P+ ++ L L + + E+++ + Sbjct: 1 MKVKVPKTLLTEHVALLERVIPTRSSNPLFTYLGLALTPDALVLFGTNGEVDLEVRLELP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G V A + +V+ L E + G E+++S G + L P+ +P Sbjct: 61 TEGEGRFLVPAQPFFQLVKSLPGDQ-----VELDFGAELSLSSGSFSTRLSLAPDEGYPE 115 Query: 121 T-------KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E Y L L + +A + EE R G+ +E L+ + Sbjct: 116 LFFPSLEGPAEPYPLQTLLPVEELLKALSHVRYAASNEEYRAIFRGVQLEFSEGGLR--S 173 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232 VA+DG+RLA+ + ++VP ++V E++R+L + V ++L + L Sbjct: 174 VASDGYRLALYR--LAKPQPFAKKVVVPARSVDEMVRVLKGMGEGEVALALGPGVLGLAT 231 Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 L M+VRL++GEFP+Y+ VIP + + R+A+ RVS++S + V L Sbjct: 232 GKGQLRMAVRLMEGEFPDYERVIPKEFPLKAAFDVEAFREALRRVSVLSDRQNHRVDLLF 291 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ ++ + D GK E + V P+ + +N +YLLE + +S + V L Sbjct: 292 EERRVLLSAEG-DYGKGQEEIPVRLEGLPLAVAYNARYLLEALSPLSG------QAVLLL 344 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R + V++P+R+ Sbjct: 345 SGPTSPSLVRPGEA--------AEGYQAVVVPLRV 371 >gi|312877903|ref|ZP_07737848.1| DNA polymerase III, beta subunit [Caldicellulosiruptor lactoaceticus 6A] gi|311795329|gb|EFR11713.1| DNA polymerase III, beta subunit [Caldicellulosiruptor lactoaceticus 6A] Length = 368 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++ + + + + VL++A D + + ++++ A Sbjct: 1 MRFVVDKDILQDNISKVIPAAASTKVTSILECVLIEAEDS-IVFTTNDMKMQMQTEFEAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L DIV+KL G ++NE V I F L + +FP Sbjct: 60 ILERGAALVKAKLFSDIVKKLPSGEVEVVREDNE----VKIRSQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++ E +S + V++ FA + +E R G+ F E+D + V DGHR Sbjct: 116 MEKKPSESFCEFVASEFVDGVDKVIFATSKDETRPTFTGVLFEKEEDDF-VNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ +A + S IVP + + +I +I+ ++ V+VS E++ I S ++ + Sbjct: 175 LAICKIKPIA-VEGSFSKIVPAENLDDITKIVDIEEAEKVRVSFFENQATFEIGSTTVIL 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 LI G+F +Y+ IP ++ ++ L ++R SI+S + + ++ + T Sbjct: 234 TLITGKFFDYKGAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293 Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V + G+ E + + + FN KY L+++ + E+ + S S Sbjct: 294 VRSMSADGRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSPS 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D N Y+++P+++ Sbjct: 348 IVQKPDDP---------NYIYLVLPIKM 366 >gi|294673576|ref|YP_003574192.1| DNA polymerase III subunit beta [Prevotella ruminicola 23] gi|294473619|gb|ADE83008.1| DNA polymerase III, beta subunit [Prevotella ruminicola 23] Length = 374 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ T+ + + L R+I KN +P+ L + + +L + AS E + + Sbjct: 1 MRFTLSSTALSSKLVALSRVINSKNALPILGDFLFEIENNVLHLTASDSENVMKTQLELT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D + H L + V+ + F + V I++ + F L EFP Sbjct: 61 ESDGNFRFAIGNHDLLEAVKGFSEQPIT--FDVDLEQNLVKITYQNGLFSLPVDNADEFP 118 Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + ++ S L +++L + R+ FA A +E+R +NGI+F + + L VA+DG Sbjct: 119 VAQPVSDFAKSIVLPNAILAENINRSIFATAQDELRPVMNGIYFDLTPD--HLAVVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + I+P+K + +L V + E +N + Sbjct: 177 HKL-VRNKIFTIKSEEPSAFILPKKPANLLKNLLGKDGGDVTIRFDERNAEVNYGDGVLL 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N E+R++ +L A+ RV ++ V+ + + Sbjct: 236 CRLIEGRYPNYNSVIPQNNPNEVRLDRLSLLAALRRVQPFANDSSNLVRFHVEGSTFQLD 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D K A E M YN PM I F +EI+ NI + V+ +L S+ + Sbjct: 296 AEDYDFSKTATERMTCEYNGTPMSIGFKGNAFIEILGNIECSD-----VIIQLADSSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 + ++ ++MPM Sbjct: 351 LVLPSEQP------ENQEVVMLMMPM 370 >gi|291294406|ref|YP_003505804.1| DNA polymerase III subunit beta [Meiothermus ruber DSM 1279] gi|290469365|gb|ADD26784.1| DNA polymerase III, beta subunit [Meiothermus ruber DSM 1279] Length = 361 Score = 245 bits (627), Expect = 7e-63, Method: Composition-based stats. Identities = 91/386 (23%), Positives = 180/386 (46%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + + E L RII +++ P+ ++ ++ +D L ++ + E++I +PA Sbjct: 1 MEVRIPKRTLAEGLSILERIIPSRSSNPILTYLPMELSDQGLILRGTNGEVDIEVKLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V A IVR F E + + G N L + +P Sbjct: 61 VQGTGQVLVPAQTFVQIVRSAPGELVELIFGGKE---RLELHSGAFNTQLATTGPDGYPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++A+S L + R +A +TEE R G+ ++ L+ AVA+DG+R Sbjct: 118 LSFGPPGPE-KIAASRLAQAITRVRYAASTEEFRAIFRGVQIEMSPTSLR--AVASDGYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA ++ + Q K +++P ++ EI+R+ V ++++E + L E++ MSV+ Sbjct: 175 LACYDLPMQLQTRK---LVIPARSADEIVRVFKDAQGEVALAVAEGTLTLVGEAVRMSVK 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GEFP+Y VIP S E + LR+++ RV+++S V L + +KL + + Sbjct: 232 LMEGEFPDYGRVIPQSFVLEATLQAEALRESLKRVAVLSDRNNHRVNLLFNHNKLDIDAE 291 Query: 301 NPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D G+ E + + + P + + +N ++L++ + I V +L S + Sbjct: 292 G-DYGRGREELGIEASGEPQLMVAYNAQFLIDALAPIEGA------VRIKLSGPTSPSLV 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + V++P+R+ Sbjct: 345 QAVED---------SGYLAVVVPLRV 361 >gi|313621670|gb|EFR92456.1| DNA polymerase III, beta subunit [Listeria innocua FSL S4-378] Length = 311 Score = 245 bits (626), Expect = 8e-63, Method: Composition-based stats. Identities = 83/323 (25%), Positives = 161/323 (49%), Gaps = 19/323 (5%) Query: 65 GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 G I + + DIVR+L + E + NIS G ++F L E+P E Sbjct: 3 GGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNGLDPMEYPKLPEV 59 Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + ++ +VLKN++ +T FA++ E+R L G+ + I + KL AVATD HRLA+ Sbjct: 60 TDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKDN--KLSAVATDSHRLALR 117 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 E+ + I + +I++P K++ E+ +IL S++++L+ ++I ++ L RL++G Sbjct: 118 EIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLEG 177 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLCMTVDNP 302 +P+ +IP EL +N QA+DR S+++ V ++L + ++ ++ ++P Sbjct: 178 SYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSP 237 Query: 303 DMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 ++G E++ + + I FN KY+++ + D++ + +R Sbjct: 238 EVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQISFSGTMRPFVLRP 292 Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384 KD + N ++ P+R Sbjct: 293 KDATNPNEI------LQLITPVR 309 Score = 36.4 bits (83), Expect = 7.0, Method: Composition-based stats. Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 11/100 (11%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITG 55 I + + + ++ + PV V D L A+ EI + Sbjct: 64 NIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKDNKLSAVATDSHRLALREIPLET 123 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQ-ISFFKENE 94 ++D +I + L ++ + L D ++ I N Sbjct: 124 ----NIDEEYNIVIPGKSLAELNKILDDASESIEMTLANN 159 >gi|312792285|ref|YP_004025208.1| DNA polymerase III subunit beta [Caldicellulosiruptor kristjanssonii 177R1B] gi|312179425|gb|ADQ39595.1| DNA polymerase III, beta subunit [Caldicellulosiruptor kristjanssonii 177R1B] Length = 368 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++ + + + + VL++A D + + ++++ A Sbjct: 1 MRFVVDKDILQDNISKVIPAAASTKVTSILECVLIEAEDS-IVFTTNDMKMQMQTEFEAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L DIV+KL G ++NE V I F L + +FP Sbjct: 60 ILERGAALVKAKLFSDIVKKLPSGEVEVIREDNE----VKIRSQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++ E +S + V++ FA + +E R G+ F E+D + V DGHR Sbjct: 116 MEKKPSESFCEFVASEFVDGVDKVIFATSKDETRPTFTGVLFEKEEDDF-VNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ +A + S IVP + + +I +I+ ++ V+VS E++ I S ++ + Sbjct: 175 LAICKIKPIA-VEGSFSKIVPAENLDDITKIVDIEEAEKVRVSFFENQATFEIGSTTVIL 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298 LI G+F +Y+ IP ++ ++ L ++R SI+S + + ++ + T Sbjct: 234 TLITGKFFDYKGAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293 Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 V + G+ E + + + FN KY L+++ + E+ + S S Sbjct: 294 VRSMSADGRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSPS 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D N Y+++P+++ Sbjct: 348 IVQKPDDP---------NYIYLVLPIKM 366 >gi|218283255|ref|ZP_03489316.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989] gi|218216010|gb|EEC89548.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989] Length = 372 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 83/391 (21%), Positives = 169/391 (43%), Gaps = 29/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M +++R + L R I + +P + + D + + S I I I Sbjct: 1 MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISIRTVIVPG 60 Query: 58 ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ GSI + + L +IVRKL D I + + V IS + F L Sbjct: 61 ELNNLDIEEEGSIIIDSKYLLEIVRKL-DCKNIEIEVID--YSLVRISSDNGQFNLNGIR 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P + + F L ++ LK++V +T FA + ++ R L G+ F N + L Sbjct: 118 SNEYPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNF--NSQGNMLYCS 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RLA +++ ++ +I +P K++ E++R +S D ++ + + + Sbjct: 176 GTDSYRLARKTIEL--DSSQDFNITIPSKSLTEVVRSVSDDD-TIDIFADSKKAQFVFDK 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RLIDG FP+ Q +IP S ++ V+ + +DR + + + ++ +KL + + Sbjct: 233 TIIQTRLIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQE 292 Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + ++G + E + Y + + N Y+L+ I + ++V+ Sbjct: 293 THVKTYSSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVL-----IEFSGF 347 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + S +L+P+R Sbjct: 348 MKPIKVSNPEDASV---------LMILVPIR 369 >gi|27904524|ref|NP_777650.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] gi|31340042|sp|Q89B36|DPO3B_BUCBP RecName: Full=DNA polymerase III subunit beta gi|27903921|gb|AAO26755.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp (Baizongia pistaciae)] Length = 371 Score = 245 bits (626), Expect = 9e-63, Method: Composition-based stats. Identities = 96/385 (24%), Positives = 200/385 (51%), Gaps = 18/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK + +++ L +I R + P+ ++LL A D + + ++ ++EI I Sbjct: 1 MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIIILDV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GSITVS + +I + L K + ++ I ++ + L + P FP Sbjct: 61 TLLEPGSITVSGKKILNICQNLPKD---HNLKIQYINNKLKIVSHNNQYLLATLPIKNFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + K E +F ++ + LK+++ T+F+MA +++R +LNG+FF + + L AVATDG+ Sbjct: 118 NLKISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVR--NQHLYAVATDGY 175 Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R+A+ + + K SII+PRK V E++++L+ + + +++S + + ++L + Sbjct: 176 RIAICKKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNLIFT 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++I +FP+Y ++I K++ +N T ++A+ RV+I+S+ + V + +KL +T Sbjct: 236 SKIITEKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKLLIT 295 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N +A E +++ Y + + N Y+++I++ I D E+ + S+ Sbjct: 296 TSNQHDEEASEIIDIIYTNIKIKMSINASYMIDILNAIQ-----DQEICLSKNDVTHSIQ 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I+ ++ A Y++MP+ Sbjct: 351 IQA------HHYKIAPKAIYIIMPL 369 >gi|312621130|ref|YP_004022743.1| DNA polymerase III subunit beta [Caldicellulosiruptor kronotskyensis 2002] gi|312201597|gb|ADQ44924.1| DNA polymerase III, beta subunit [Caldicellulosiruptor kronotskyensis 2002] Length = 368 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 90/389 (23%), Positives = 170/389 (43%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++ + + + + VL++A D + + ++++ A Sbjct: 1 MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAED-RIIFTTNDMKMQMQTEFEAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GS + A LL DIV+KL G +ENE V I F L + +FP Sbjct: 60 ILDRGSALLKAKLLSDIVKKLPSGDVEVIREENE----VKIRSQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E +S + V++ FA + +E R G+ F E+D + V DGHR Sbjct: 116 MDRKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFE-KEDDDFVNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ VA + S IVP + + +I +I+ ++ V+VS E++ I S ++ + Sbjct: 175 LAICKIKPVA-VEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVIL 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296 LI G+F +Y++ IP ++ ++ L ++R SI+S IQAV + Sbjct: 234 TLISGKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + D G+ E + + + FN KY L+++ + E+ + S S Sbjct: 294 VKSVSAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D N Y+++P+++ Sbjct: 347 SIVQKPDDP---------NYIYLVLPIKM 366 >gi|194335184|ref|YP_002016978.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme BU-1] gi|194307661|gb|ACF42361.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme BU-1] Length = 374 Score = 245 bits (625), Expect = 1e-62, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 173/388 (44%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + + +G + I K P +V L G L + A+ E+ IT Sbjct: 1 MKLTSSIRQLQDAIGKVAQAIPAKTIDPRFENVHLSIESGSLTLFATDGELSITAKSDVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQ--ISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 G+I V A L D +R + D A + +E ++I+ + + ES+ Sbjct: 61 TSDSGNIGVKARTLQDFLRSMYDTAVTFVIERQEISDHGTLHITTDKGKYKIPCQFESK- 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E+ Y S EL ++ +L+++T FA + + +R + G+ F + + AV+TDG Sbjct: 120 QEKHEKTYDISLELETAEFLDLIQKTIFACSVDGMRPAMMGVLFELEGN--TITAVSTDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL + + I + I++P + + + ++ + ++ + + I ++ + Sbjct: 178 HRLVRCRKNYNSAIGEKQKIVIPARVLSILQKLAQHEFITMSIDSDRRFVRFIIGNIVLD 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY VIP +DK L ++ + + +V RV SS I VK+ + L + Sbjct: 238 ASLIIEPYPNYDAVIPVEHDKHLIIDRSMIYDSVRRVGRFSS--IGDVKMVIEGQLLKVM 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A E M Y + I FN +++ + ++ D+E+ L S ++V Sbjct: 296 AENTNEGEAAQEEMPCLYTGDDITIGFNSRFIEAALAHLD-----DNEIRIELKSPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + ++MP+RI Sbjct: 351 IFKP------HKTEEDDKLIVLVMPVRI 372 >gi|146329375|ref|YP_001208942.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A] gi|146232845|gb|ABQ13823.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A] Length = 414 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 106/431 (24%), Positives = 191/431 (44%), Gaps = 63/431 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK + + + + L I++RK T+ + H+ L+ + L + + EI + IP Sbjct: 1 MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+IT+ Y ++++ DG I+ N+ + +I G + L + P +FP Sbjct: 61 NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQ---QFHIHAGKTIVKLATLPAKDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + Y++ L +S+ NL+ + +A+A ++ R YLNG+ +I ++ L AV+TDGH Sbjct: 118 IPLDNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGH 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----------------SKDS------ 217 RLA A++ IA IVP KAV E+++ LS S D Sbjct: 178 RLACAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNE 237 Query: 218 ----------------------SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 + + SE + L I S S RLIDG++P Y+ VIP Sbjct: 238 QIDILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPL 297 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 + + + L A+ R ++ + R V+L L +T N + ES+ + Sbjct: 298 QQENPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIIN 357 Query: 316 NEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 + ++I N YL++++ ++ + V L++ + + KD+ Sbjct: 358 SGNLTLEIGLNVNYLIDVLMHLEG-----ETVQLHLENGEQACLLMSKDEP--------- 403 Query: 375 NAFYVLMPMRI 385 + +V+MPMRI Sbjct: 404 DVRHVIMPMRI 414 >gi|300871560|ref|YP_003786433.1| DNA polymerase III subunit beta [Brachyspira pilosicoli 95/1000] gi|300689261|gb|ADK31932.1| DNA polymerase III, beta subunit [Brachyspira pilosicoli 95/1000] Length = 375 Score = 244 bits (624), Expect = 2e-62, Method: Composition-based stats. Identities = 95/389 (24%), Positives = 184/389 (47%), Gaps = 21/389 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + DI++ +G ++E K + +VL +L + A+ + I Sbjct: 1 MKFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTATDGSVWARSRIMLD 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G++ V A + I++++ DG +ENE + +G + + +FP Sbjct: 61 DYEGEGTVAVYAKKISSILKEMPDGMITINVEENEKIN-IESENGKTKHLIIGMKTDDFP 119 Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S E + L + L ++ +T ++A E + L GI F + D K AVATDG Sbjct: 120 SYPESNGDINYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 R+A+ E + A SII+ K + EIL + + VK+ + +++ + Sbjct: 178 RRMAIIEREFEGIDAGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQVGKYDF 237 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDKLC 296 LI+G++PN++ VIP RVN +L A+ R V +++ VR + + L++S + L Sbjct: 238 VSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRVVPMINDVRSKRMILTVSEESLK 297 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + N +MG+++E +++ Y + +NY Y+ ++I I S+ V F ++ +S Sbjct: 298 VKGINQEMGESLEEIDIKYTGEEHSVAYNYTYIQDVIKQIDSEI-----VTFMVNKDSSP 352 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +R +++ + ++++MPM I Sbjct: 353 TIVREIERE---------DYYFIIMPMSI 372 >gi|312126264|ref|YP_003991138.1| DNA polymerase III subunit beta [Caldicellulosiruptor hydrothermalis 108] gi|311776283|gb|ADQ05769.1| DNA polymerase III, beta subunit [Caldicellulosiruptor hydrothermalis 108] Length = 368 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 86/389 (22%), Positives = 172/389 (44%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V++ + + + + VL++A D + + ++++ A Sbjct: 1 MRFVVDKEVLQDNISKVIPAAASTKVTSILECVLIEAEDS-IVFTTNDMKMQMQTEFEAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ V A L DIV+KL G ++ +E+ +EV I F L + +FP Sbjct: 60 ILERGAALVKAKLFSDIVKKLPSG-EVEVIRED---SEVKIRSQKIEFRLPTLDPLDFPK 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ E +S + V++ FA + +E R G+ F E+D + V DGHR Sbjct: 116 MDKKPSESFCEFVASDFVDGVDKVIFATSKDETRPTFTGVLFEKEEDDF-VNLVGMDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239 LA+ ++ +A + S IVP + + +I +++ ++ V+VS E++ I S ++ + Sbjct: 175 LAICKIKPIA-VEGNFSKIVPAENLDDITKVVDIEEAEKVRVSFFENQATFEIGSTTVIL 233 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296 LI G+F +Y+ IP ++ ++ L ++R SI+S IQAV + Sbjct: 234 TLIAGKFFDYKGAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + D G+ E + + + FN KY L+++ + E+ + S S Sbjct: 294 VKSMSAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D N Y+++P+++ Sbjct: 347 SIVQKPDDP---------NYIYLVLPIKM 366 >gi|312878754|ref|ZP_07738554.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260] gi|310782045|gb|EFQ22443.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260] Length = 382 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 86/391 (21%), Positives = 169/391 (43%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++E+S + A R + + + V +L++A++ +E+ A+ + +T Sbjct: 1 MKLSIEKSQFTKSWSLAERSVGTSSALNVLSGILVRASESTVELLATDLKTSVTCRARGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+V G + D+ RK +G +E + + G S + ++ EFP Sbjct: 61 RVEVPGEAVFPVKSVGDLFRKAPEGQFSVSVEEG----KATLLAGRSRYRFSTYGVQEFP 116 Query: 120 STKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 E F A + + L E T A EE +L+ +F E+ L V+TD Sbjct: 117 RLPSAEQGTPFGTTTAQQLFEALSEGTLAASTGEEYPQFLSCAYFQ--PENGFLRVVSTD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235 RLA + + A+ P I++P K + E+ RIL ++ +KV +++ + + + Sbjct: 175 SRRLAYSRFAV-GDAAEGPGILLPMKGIKELERILGSLDGETPLKVRFDDAQAYFSTSEV 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DK 294 +VR ++ +FP Y+ ++P S ++L +A++R+ ++ + V L LS Sbjct: 234 EFAVRRVEAKFPQYERILPTSRTTWFEAGRSSLVEALERIDVVVRDFNRMVVLQLSPGGS 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + PD G+A+E + P+ I FN ++ L+ + + D V + Sbjct: 294 CTLRGRAPDFGEAVEEVEGSIEGEPLRIAFNVRFFLDGLKALK-----DQGVRLDFNGPE 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR DS ++ P+ + Sbjct: 349 GHLAIRRPGSDS---------YLCLVAPIAL 370 >gi|317496619|ref|ZP_07954966.1| DNA polymerase III [Gemella moribillum M424] gi|316913284|gb|EFV34783.1| DNA polymerase III [Gemella moribillum M424] Length = 379 Score = 244 bits (623), Expect = 2e-62, Method: Composition-based stats. Identities = 95/396 (23%), Positives = 183/396 (46%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+E+S+ L L H R+I + + + L+ N+ +L +KAS + + +I A Sbjct: 1 MKFTIEKSNFLAGLNHVARVIAPNSLFEILKGIKLELNENVLVLKASDSLVSVEFSIDAY 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ G + + + +I+RK +N + + G S F ++ Sbjct: 61 DDDKEIITIEEEGQVVLPSRNFIEIIRKAPTNLIEIETIDNN----ILVKSGKSEFNVKG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +E+P +S L V ++++ T F A + R L G+ F +N + L Sbjct: 117 YDANEYPEFPVISKEHSLTLDGKVFNDIIKETVFCTAPNDQRPILEGVNFTLNNK--VLT 174 Query: 173 AVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A ATD +RL+ ++ + K ++I+PRKA+ R++ V++ +RI L Sbjct: 175 ATATDSYRLSRRQITLEEVADDKEFNLIIPRKALTYFQRMIEEGKDQVEIFYENNRIVLY 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 +++ +V LI G +PN +IP + N L AVDRVS+MS + +KL + Sbjct: 235 YQNVVYTVLLISGNYPNTNKLIPTVFECTFVSNGRELFDAVDRVSLMSREDKDDIIKLIV 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + L ++ + D+G A+E + V E +I + +YL E I I+S +E++ Sbjct: 295 KDNMLEISSQSKDLGSAVEEIKVESTLEEDVFEISVSGRYLKEAIYAIAS-----EEIIV 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ ++ D + +++P+R Sbjct: 350 KFSGELTAFIVQPAD--------YHRDIIELILPVR 377 >gi|282859399|ref|ZP_06268506.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010] gi|282587833|gb|EFB93031.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010] Length = 374 Score = 243 bits (622), Expect = 2e-62, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 171/386 (44%), Gaps = 19/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + S + L ++I KN++ + L + + L I AS E + I Sbjct: 1 MRFNLSSSVLSSKLQTLSKVIASKNSLAILDSFLFEIKNNQLTITASDSENTMHSTINLD 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + S V+ + D V++L + +E + +G NF +Q P EFP Sbjct: 61 SAEGETSFAVNNRTIIDAVKELPEQPLSLDVNMDEQKIYITYQNGSYNFPIQ--PADEFP 118 Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + + + +L + R+ FA A +E+R +NG++F ++ + L VA+DG Sbjct: 119 KVQPIAAGATTITIDADILAENINRSLFATAQDELRPVMNGLYFDLSADS--LAIVASDG 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + I+P+K + +L+ V + + ++ +S Sbjct: 177 HKL-VRNKIFTIKSDTPSAFILPKKPANLLKNVLTKDGGDVVIRYDQRSAEISYAEGYLS 235 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G +PNY +VIP +N ++ ++ +L A+ RVS +S Q ++ + + +L + Sbjct: 236 CRLIEGRYPNYNSVIPETNPNQITIDRRSLIGAIRRVSPFASESSQLIRFHIENGQLTLN 295 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y M I F +LEI++N+ D++ +L + + Sbjct: 296 AEDIDFSTSAKESVICDYAGNAMSIGFKGASMLEILNNLEG-----DDITIQLADPSRAG 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 351 VIVP------GKQPENEDVLMLIMPM 370 >gi|118799|sp|P21174|DPO3B_MICLU RecName: Full=DNA polymerase III subunit beta gi|149849|gb|AAA25316.1| DNA polymerase III beta subunit (dnaN) [Micrococcus luteus] Length = 310 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 70/318 (22%), Positives = 138/318 (43%), Gaps = 10/318 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER + + + A R + + +PV +L+ A G++ I + E I A Sbjct: 1 MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + VS LL DIVR L G +V ++ S F L + P ++P+ Sbjct: 61 VETAGQVLVSGRLLNDIVRSLPQAQVTVELD----GGKVLVTCRSSRFSLATMPVGDYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + V + A + ++ L + I + + +ATD +R Sbjct: 117 LPELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGD--TITFLATDRYR 173 Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238 LA+ E+ + S+++ + + E+ + L S D + + + + + Sbjct: 174 LAMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTT 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 L+DGE+P +++ P S+ + V+ L +A RV++++ R A+++ + ++ + Sbjct: 234 SVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLD 292 Query: 299 VDNPDMGKAIESMNVYYN 316 D A ES+ Sbjct: 293 AGTGDDASANESVPCTLE 310 >gi|158317615|ref|YP_001510123.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] gi|158113020|gb|ABW15217.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] Length = 404 Score = 243 bits (621), Expect = 4e-62, Method: Composition-based stats. Identities = 86/416 (20%), Positives = 167/416 (40%), Gaps = 54/416 (12%) Query: 6 ERSDILELLGHACRIIERKNTI---PVSCHVLLQAN------------------------ 38 ER + + G A R + K T V +LL+A Sbjct: 2 ERDVLADATGWAARYVP-KPTAGAQQVLTGLLLEATMPTPDQAGDQAGDQATDQTTEQAR 60 Query: 39 ----DGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 L + A E+ + A V G + V LL D+VR L D + E Sbjct: 61 TQAPGPALTVSAFDSEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVVVEATE-- 118 Query: 95 LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 T V I G + F + + ++P E+ + V + A ++ Sbjct: 119 --TRVIIECGAARFRIPALAAEDYPVLPAFPPPVG-EVDTLGFAAAVAQVAPAAGRDDAL 175 Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILS 213 L + I L + VATD +RLAV + + + ++ VP + + ++ ++ + Sbjct: 176 PVLTAVRLEIARGGLTM--VATDRYRLAVRTIPWQPTVDEPDAVAHVPARLLADMAKLPT 233 Query: 214 SKD-SSVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 + ++ + + E+ R L++ VRL++G FPNY+ ++P +++ + L Sbjct: 234 TASRVALGMGVDEAGVLRFGLSVNGRQTIVRLLEGSFPNYRRLLPETSELTVTAPTAVLA 293 Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 AV RV++++ R ++ + S+ ++ + +A E + V Y+ + + FN +L Sbjct: 294 AAVRRVALVA-TRTAPLRFTFSAGQVVAEAGDGGGAQASELVPVEYDGPELSVLFNPAFL 352 Query: 330 LEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L+ + + DE + + +S+ + GKD + Y+LMP+R Sbjct: 353 LDGLAAVEGDEAIIGFATADPEIASSKPAVLTGKDD--------GEDYRYLLMPIR 400 >gi|329769244|ref|ZP_08260662.1| DNA polymerase III [Gemella sanguinis M325] gi|328839335|gb|EGF88916.1| DNA polymerase III [Gemella sanguinis M325] Length = 379 Score = 243 bits (620), Expect = 4e-62, Method: Composition-based stats. Identities = 93/396 (23%), Positives = 180/396 (45%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK T+E+SD LE L H R+I + + + L+ + L +KAS + + I A Sbjct: 1 MKFTIEKSDFLEGLNHVARVIAPNSLFEILKGIKLELSSNNLVLKASDSLVSVEFIIDAY 60 Query: 60 -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ G + + + +I+RK + + + I G S F ++ Sbjct: 61 KDDKEIITIEEEGQVVLPSRNFIEIIRKAPTNLIEFESTD----SFIKIHSGKSEFNIKG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + E+P S +L ++V +++ T F A + R L G+ F + + L Sbjct: 117 YDAMEYPEFPVISRENSLKLEATVFNDIIRETVFCTAPNDQRPILEGVNFSLKNK--ILT 174 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A ATD +RL+ +V + K ++I+PRKA+ R++ + V++ +RI L Sbjct: 175 ATATDSYRLSRRQVVLNDEDAEKEFNLIIPRKALTYFQRMIETGGDEVEIFYENNRIVLY 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 +++ +V LI G +PN + +IP + N AVDR+S+MS + +KL + Sbjct: 235 YQNVVYTVLLISGNYPNTEKLIPTMFECSFTANSREFFNAVDRISLMSREDKDDIIKLVV 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + L ++ D+G A+E + V + +I + KYL + + I+S +E+V Sbjct: 295 TEGNLEISSQAKDLGSAVEELQVNSKLEDDSFEISVSGKYLKDAVSAIAS-----EEIVI 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ ++ D + +++P+R Sbjct: 350 KFSGELTAFIVQP--------SDYHRDIIELILPVR 377 >gi|269977743|ref|ZP_06184703.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1] gi|269934047|gb|EEZ90621.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1] Length = 388 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 78/391 (19%), Positives = 167/391 (42%), Gaps = 22/391 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PAS 60 ++ + R + E + + R I ++ +PV V + A +E + + + P Sbjct: 9 ELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPLE 68 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++ V LL + R L + +IS ++I+ G + L PE ++P Sbjct: 69 LITEGTVVVDGKLLSETARALPN--KISEVSFKTEDNYLHITCGSFHQQLLVMPEEDYPQ 126 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + V + V + + + A + +E L GI I E KLC +ATD +R Sbjct: 127 LPQLPQVVGQV-DAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDRYR 183 Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234 +A+ E+ A ++ ++V K + + + ++S S+ +++ + L+ Sbjct: 184 MALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAGG 242 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293 + ++ DG +P+ + + P + V ++ A RV+I+S ++ Q + LS + Sbjct: 243 RLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQG 302 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + A +++ V N + + FN + L+E + + + V Sbjct: 303 TLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLSVVD-----EPYVRLSFKDE 357 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I G+ ++ D+ ++ Y++MP+R Sbjct: 358 TKPVIITGQKEE---TGDDSLDFQYLIMPIR 385 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 13/182 (7%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 + L VL V + ++ + G+ HI + + D + A Sbjct: 6 GIVELILNREVLAEAVAWSSRTISQRPAVPVMAGV--HIAATSAGVEFASYDYNVSARVT 63 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-DG 244 V+ ++ +++V K + E R L +K S V ++ +H+ S + ++ + Sbjct: 64 VE-PLELITEGTVVVDGKLLSETARALPNKISEVSFKTEDNYLHITCGSFHQQLLVMPEE 122 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299 ++P +P +V+ ++ +VSI +S + L + +KLC+ Sbjct: 123 DYPQ----LPQLPQVVGQVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPEKLCVLA 178 Query: 300 DN 301 + Sbjct: 179 TD 180 >gi|256545951|ref|ZP_05473306.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC 51170] gi|256398373|gb|EEU11995.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC 51170] Length = 375 Score = 243 bits (620), Expect = 5e-62, Method: Composition-based stats. Identities = 91/387 (23%), Positives = 178/387 (45%), Gaps = 21/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ D+ + A + + RK I + + +A + L + +S EI I Sbjct: 6 MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDTLTLTSSDGEISIVTKANCK 65 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + ++A+++ +IVRKL D I E+ +++ I SNF + +F E + Sbjct: 66 VVQEGEMAINANIIANIVRKLPD-ELIKIELED---SKIKIKCNGSNFNILAFDYYEKKN 121 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V E+ + LK + +T FA + +E + L GI F + D L VA DG+R Sbjct: 122 F-SIPSVDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFELK--DGYLNFVALDGYR 178 Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ ++ + +I+PRK++ E RI+ + K+ + I +M Sbjct: 179 VALKKLKLSYPSSMDKARLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 237 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298 ++ID + +Y N+I + L V+ L +++R ++++ R +K+++ DK + Sbjct: 238 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDKCLIE 297 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N ++G E + + + I FN +YL+E + + + L SS + Sbjct: 298 S-NSEIGDLKEVLQIQKEGDDVKIAFNARYLIEGVKACDTQT-----IRMHLKSSLNPCL 351 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + +K + Y+ +P+R+ Sbjct: 352 IYPNE-----SKYDDEEFTYLALPVRL 373 >gi|320332620|ref|YP_004169331.1| DNA polymerase III subunit beta [Deinococcus maricopensis DSM 21211] gi|319753909|gb|ADV65666.1| DNA polymerase III, beta subunit [Deinococcus maricopensis DSM 21211] Length = 360 Score = 242 bits (619), Expect = 5e-62, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 176/388 (45%), Gaps = 31/388 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + + E +G RII +N+ P+ + + A + L + + EI+++ + A Sbjct: 1 MRAQVSKKALNEGVGMLERIIPARNSNPLLTALKVDATERGLTLSGTNLEIDLSCFVAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ + V AHL IVR L + G E+ + G S F LQ+ S +P Sbjct: 61 VNEQAAFVVPAHLFAQIVRNLGG----ELVELEHSGNELAVRAGGSEFKLQTGDLSAYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++V + A+ + K + +A + E + GI ++ +A+DG R Sbjct: 117 LSFPDHVDTTLDAAELAK-ALSSVRYAASNEAFQAVFRGIKLEYRGGQARV--IASDGFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + A ++I+P ++ E++R+L +D V+++ E + + + + M+V+ Sbjct: 174 LALRDF---AAHGDGQNLILPARSADELVRVL--RDGEVRLAYGEGALGVTTDRVRMNVK 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 L+DG+FP+Y+ VIP ++R+ L++AV RV++++ V+ +S L + Sbjct: 229 LMDGDFPDYERVIPRDIKLQVRLQAAALKEAVSRVAVLADKNANNRVEFLVSEGTLRL-A 287 Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 D G+A +++ V M + FN KY+L+ + I S S Sbjct: 288 TEGDYGRAQDTLTVEQAGDEPAMSLGFNAKYVLDALGPIDGA------AELLFSGSTSPA 341 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + V++P+R+ Sbjct: 342 MFRAVE---------GGGYLAVVVPLRV 360 >gi|329768085|ref|ZP_08259594.1| DNA polymerase III [Gemella haemolysans M341] gi|328838240|gb|EGF87852.1| DNA polymerase III [Gemella haemolysans M341] Length = 379 Score = 242 bits (619), Expect = 6e-62, Method: Composition-based stats. Identities = 86/396 (21%), Positives = 181/396 (45%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+ +S+ L+ L H R+I + + + ++ L +KAS + + +I Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDQLILKASDSLVSVEYSINSY 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ G + + + +I+RK EN + + G S F ++ Sbjct: 61 EDDKEIITIEEEGQVVLPSRNFIEIIRKAPTDLIEIETIENN----ILVKSGKSEFNVKG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +++P S +L +++ ++++ T F A + R L G+ F ++ + L Sbjct: 117 YDANDYPEFPVISKENSLKLEANIFNDIIKETVFCTAPNDQRPILEGVNFSLSNK--ILT 174 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A ATD +RL+ +V + K ++I+PRKA+ R++ + V++ +RI L Sbjct: 175 ATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLY 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 +++ +V LI G +PN +IP + N AVDRV++MS + +KL + Sbjct: 235 YQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFNAVDRVALMSREDKDDIIKLVV 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + L ++ + D+G A+E + V + +I + KYL + + V +E++ Sbjct: 295 TDNLLEVSSQSKDLGSAVEELKVSSTLEDDKFEISVSGKYLKDAVSA-----VAAEEIIV 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ I+ D + + +++P+R Sbjct: 350 KFSGELTAFIIQPSDYHREIIE--------LILPVR 377 >gi|291288759|ref|YP_003505575.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM 12809] gi|290885919|gb|ADD69619.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM 12809] Length = 368 Score = 242 bits (618), Expect = 7e-62, Method: Composition-based stats. Identities = 95/386 (24%), Positives = 175/386 (45%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + +I + A KN V ++L+ A + ++A+ ++ +G IP S Sbjct: 1 MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIPVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G+ TVS L DI++++ DG+ I F + G+++NI G S+F L + FP+ Sbjct: 61 VEETGTATVSGKKLLDIIKEIPDGSVIDFSFD---GSKINIDSGKSSFKLSTISHEIFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E Y ++ SS+L NL+++T F ++T+ + G + + KL A D R Sbjct: 118 MAEITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGD--KLEISAADFQR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A + V + + I +PRK V E+L+IL +D V++ +I I + + + Sbjct: 176 IATSSVKFDEEYSNEFMINIPRKTVMELLKIL-DEDEYVEIETDRKQIIFTIGQVKIFSK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+ + + + ++N + RVS ++S V LS + Sbjct: 235 LIEKYIKSITKLFANDLPLQAKLNRAEFLDVIKRVSAITSEVTHGVVLSFKPGTFTVYSL 294 Query: 301 NPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + G ES+ + YN P+DI FN K++ E+I NI +D + + I Sbjct: 295 ETEYGTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTDYFY-----LHMVGERNPAVI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + Y+++P+ I Sbjct: 350 IPETGE----------YKYLVVPISI 365 >gi|194332855|ref|YP_002014715.1| DNA polymerase III subunit beta [Prosthecochloris aestuarii DSM 271] gi|194310673|gb|ACF45068.1| DNA polymerase III, beta subunit [Prosthecochloris aestuarii DSM 271] Length = 375 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 81/388 (20%), Positives = 181/388 (46%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + + + I K P ++ L ++G L + A+ E+ IT Sbjct: 2 MKFSTSIKHFQDAVNKVTQAIPAKALDPRYENLHLFLDNGSLTLYATDGELSITATTEVE 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESEF 118 GS + A + + +R + D + + +L + ++IS + + ES+ Sbjct: 62 STDQGSFGMKARTILEFLRSMYDTSVTFNIERQQLSDQGLIDISTDKGRYRIPCSFESK- 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 K++++ L S+ L +++++T FA + + +R + G+ + E+ K+ AV+TDG Sbjct: 121 QEKKDKDFDLELTLTSADLLDIIQKTIFACSVDGMRPAMMGVLLEL--ENNKITAVSTDG 178 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL + + I++P + + + ++ ++ + + + + +L + Sbjct: 179 HRLVRCIKTCESGVETKKRIVIPARVLSILQKLTQDDTVTLSIDTTNNSVRFVFPNLILD 238 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI ++PNY+ VIP N+K + +N + L +V RV SS I +++S++ + + Sbjct: 239 AALIVEQYPNYEAVIPLDNEKIVSINRSTLYDSVRRVGKFSS--IGDIRISVAESVMTLM 296 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A E + Y+ + I FN K++ + +I + + + L S ++V Sbjct: 297 AENTNEGESAQEEIACVYSGEDLVIGFNSKFIEAALGHIET-----ETITMELSSPTTAV 351 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + ++ + N ++MP+RI Sbjct: 352 ILKPEKEEEQQ------NLIILVMPVRI 373 >gi|15805043|ref|NP_293727.1| DNA polymerase III subunit beta [Deinococcus radiodurans R1] gi|6457660|gb|AAF09595.1|AE001864_1 DNA polymerase III, beta subunit [Deinococcus radiodurans R1] Length = 393 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 86/364 (23%), Positives = 170/364 (46%), Gaps = 22/364 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + E LG R+I +++ P+ + ++ ++G L + + EI+++ +PA Sbjct: 2 MKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAE 61 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V + V AHL IVR L G + G E+++ G S+F LQ+ +P Sbjct: 62 VQQPENFVVPAHLFAQIVRNL-GGELVELEL---SGQELSVRSGGSDFKLQTGDIEAYPP 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L L +A + E + GI + E ++ VA+DG+R Sbjct: 118 L-SFPAQADVSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARV--VASDGYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + ++I+P ++V E++R+L KD + + + + + + + M+++ Sbjct: 175 VAIRDFPA---SGDGKNLIIPARSVDELIRVL--KDGEARFTYGDGMLTVTTDRVKMNLK 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 L+DG+FP+Y+ VIP ++ + T L++AV+RV++++ V+ +S L + Sbjct: 230 LLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGTLRLAA 289 Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D G+A ++++V M + FN +++L+ + I D S S Sbjct: 290 EG-DYGRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDGD------AELLFSGSTSPA 342 Query: 358 FIRG 361 R Sbjct: 343 IFRA 346 >gi|323143413|ref|ZP_08078098.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066] gi|322416818|gb|EFY07467.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066] Length = 376 Score = 242 bits (617), Expect = 1e-61, Method: Composition-based stats. Identities = 100/387 (25%), Positives = 193/387 (49%), Gaps = 23/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIP-----VSCHVLLQANDGLLEIKASGPEIEITG 55 MK T+ ++ L + P ++ +VL+ + L K + IE++ Sbjct: 1 MKFTLPLVSFIKHLSQVSGVAGA----PGGKDDITQNVLISIKNNELTFKCTVYSIEMSV 56 Query: 56 AIP--ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 IP A V+ G+ TV+A L D + L D + + F +E + +S G + F +++ Sbjct: 57 VIPGVADVESEGATTVNAAKLRDSCKNL-DQSALVTFDYDESNEVLLVSSGTAQFQIRTR 115 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 EFP+ + E+ L + LK +++++ F ++ E+ R YL G+ F ++ E++ + Sbjct: 116 NVLEFPTFEHEDVEQRIVLKQNQLKAIIDKSIFCISNEDFREYLKGMRFEVDGENVSVF- 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 +DGHR+AV E + +A+ + R+ E+ +IL D V+++ +++ I + Sbjct: 175 -TSDGHRMAVIETTLDVPLAQPLGSNLTRRCAAELTKILKDSDEPVELAFTKNSISTSCN 233 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +++ +L+ +PN + VIP S D + V L+ A+ RV+++SS R+ AV L + D Sbjct: 234 GYTLTSKLLICGYPNVRAVIPKSIDVSVEVPRAELKNAISRVNVLSSKRVNAVNLVFADD 293 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L + +N + A ES+N+ YN P+D+ N Y++E+++ IS+ + V F + Sbjct: 294 RLNLKTENSEHEVATESLNISYNLHPIDMSLNAGYVMEVLNAIST-----ENVRFCFANP 348 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVL 380 S I D + V Y++ Sbjct: 349 IVSTLIEPCSND----YEYGVRTRYII 371 >gi|27262250|gb|AAN87406.1| DNA polymerase III, beta chain [Heliobacillus mobilis] Length = 298 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 74/297 (24%), Positives = 140/297 (47%), Gaps = 7/297 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + R ++LE + R + + TIP+ + ++A D +L + A+ E+ I IP Sbjct: 1 MEFSCSRGELLEAVNAVSRAVSSRATIPILSGIYMEALDDVLRLVATDMELGIEYTIPVK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS V+A + ++ R+L +G + +V S L + EFP Sbjct: 61 TVQTGSTVVNARIFNEMARRLPEGPITFYISGETPALKVRYHG--SELTLNTMNPQEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L K + FA +T+E R + G+ + I+ E+++ VATD HR Sbjct: 119 LPAILDGDHLILTQGQFKEMTRLVCFAASTDESRPWFTGVLWDISPEEVRW--VATDTHR 176 Query: 181 LAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ I + +I+ K + ++ R+LS ++S++++++ S+ L + + + + Sbjct: 177 LALLSGQATESVIQQNRQVILHAKTLSDVARLLSDDEASLQITITRSQALLETDRMRVIL 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDK 294 R+I+G++P YQ VIP + V+ L +VDR S+ + +KLS + Sbjct: 237 RIIEGQYPKYQQVIPRDYKTRMTVSVKALADSVDRASLAAIGKEGSNIIKLSSDKNT 293 >gi|218961814|ref|YP_001741589.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus Cloacamonas acidaminovorans] gi|167730471|emb|CAO81383.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus Cloacamonas acidaminovorans] Length = 389 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 91/405 (22%), Positives = 182/405 (44%), Gaps = 38/405 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 M++ +E+ D+L + H I+ KNT P+ + L++ + + I + E+ + P Sbjct: 1 MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A+V G++ VSAH +I+ + DG + ++ + I G +F L + F Sbjct: 61 AAVSEGGTVAVSAHHFNEIINYMPDGVINLWRNDDL----LMIQCGKVDFNLLIADHTLF 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + + + ++ +T+FA++T+ R LNG+ + I + ATDG Sbjct: 117 PVIPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKIYPDHH--IMAATDG 174 Query: 179 HRLAVAEVD------------------IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 ++A ++ Q ++P K + + +I + + +K Sbjct: 175 RKVAEIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKELK 234 Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280 V L +RI +S ++++ +FP+YQ P + ++ L A+ RV++++ Sbjct: 235 VGLEHNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALVAP 294 Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSD 339 + L SD+ + N D G+A E+M + + I FNYKY+L I++ I ++ Sbjct: 295 DDNLRIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAIDTE 354 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + VV +L +S ++ I + ++LMP+R Sbjct: 355 K-----VVIKLGTSKDAMMIYNE------TPLPDQEITFLLMPLR 388 >gi|328949542|ref|YP_004366877.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM 14884] gi|328449866|gb|AEB10767.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM 14884] Length = 361 Score = 241 bits (616), Expect = 1e-61, Method: Composition-based stats. Identities = 93/386 (24%), Positives = 175/386 (45%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + + E +G RII +++ PV + LQ + L ++ + E+++ + A Sbjct: 1 MRVRIPKRTLAEAIGILERIIPNRSSNPVITQLFLQGHSSGLTLRGTNGEVDLELTVTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + + V AHL IVR L G + +N+ E+ + G L + +P Sbjct: 61 TEGADAFLVPAHLFGQIVRGLP-GELVELSADNQ---ELEVESGSFRTRLATATPEGYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + LA+ L + +A +TEE R G+ + L+ AVA+DG R Sbjct: 117 L-TFDAPMEARLAAPELARALAHVRYAASTEEYRAIFRGVQLEFHPGALR--AVASDGFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA D+ + + ++VP ++ EI+R+L + V V ++E ++ L E+ MSV Sbjct: 174 LARY--DLATRTEFVKKLVVPARSADEIIRVLKDTEGEVAVGVTEGKLVLASEAFRMSVA 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GEFP+Y+ VIP E ++ LR+++ RV +++ + L D L + + Sbjct: 232 LMEGEFPDYERVIPQQFVGEAVLSAEALRESIKRVKVLADKNNHRIDLFFQGDALEVVAE 291 Query: 301 NPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D G+ E ++V P + + +N +YL + + + +V RL S I Sbjct: 292 G-DYGRGSERLSVQREGEPQLVLAYNAEYLGDALSPVEG------QVRIRLSGPTSPTVI 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V++P+R+ Sbjct: 345 EAVEDP---------GYLAVVVPLRV 361 >gi|289450447|ref|YP_003474444.1| DNA polymerase III subunit beta [Clostridiales genomosp. BVAB3 str. UPII9-5] gi|289184994|gb|ADC91419.1| DNA polymerase III, beta subunit [Clostridiales genomosp. BVAB3 str. UPII9-5] Length = 367 Score = 241 bits (615), Expect = 2e-61, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 180/388 (46%), Gaps = 26/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T +++ +++ + + + I + T+P+ +L A + L + E I +PA Sbjct: 1 MKFTCDKNLLIDAITNVQKAISTRTTMPILEGILFDAENN-LILTGYDMETAIKYTMPAK 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + +++ ++ +IV+K ISF EN V I G S F L ++P+ Sbjct: 60 IEEQGKVVLNSKIIGEIVKK-AAAETISFDVENNYS--VLIQSGLSKFKLHGLSAEDYPA 116 Query: 121 TKEEEYVY--SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E + L + L +L++++ F+++ +E R LNG F +E+ + V DG Sbjct: 117 LVENDSNVKQEITLPQNELYSLIKKSIFSVSLDEKRPNLNGCFL--KKENKVIEMVGIDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 R++VA+ Q S I+P K + +L +L ++ +S +++ + +M Sbjct: 175 FRVSVADFYDANQDEVDISFIIPHKTLRNLLSMLEES-GNILISKKSNQLIFDFGRKTMI 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ--AVKLSLSSDKLC 296 R+I + NY+N+ P + + + +L +++R +MSS V + S+ + Sbjct: 234 SRIISENYINYRNIFPEQSITNIELKTKDLLGSIERSILMSSPDDHRYPVTIKCDSETME 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ N + G E ++V + +D+ N YL++ + I D+++ + S+ Sbjct: 294 ISSIN-NRGDFHEIIDVTFKGKAVDVDINPYYLIDALKVID-----DEKIKVSFNESSGP 347 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V I N N ++++P+R Sbjct: 348 VIIEPI---------NNKNFMFLILPLR 366 >gi|313892141|ref|ZP_07825734.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII 345-E] gi|313119279|gb|EFR42478.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII 345-E] Length = 369 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 168/386 (43%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ D++ L R + K T + + A D +E +A+ + I A Sbjct: 1 MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G ++A L +R + K+NE T V G + +FP Sbjct: 61 IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQYIAKFPTRLHDDFPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L L + ++ A ++ + GI F I ++ K AT+ HR Sbjct: 119 ILNMQNTSKAILKCKDLVEMTNLVQYSAANDKQKPLFTGILFEIKDK--KFIMAATNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV E+++ IIVP + +++++L +D V+++ +++ + + Sbjct: 177 LAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFTFNNTYFIT 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 LI+GE+P+Y+ VIP D + ++ AV VS +S Q + S+DKL + Sbjct: 237 SLINGEYPDYKRVIPSHFDAKAELDLNEFIDAVRFVSPISRDVNYQTINFFFSNDKLEIY 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD+GK+ ++ + ++I FN Y+ +I+ + ++++ + + N + Sbjct: 297 EEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKIILNLIK------NGPML 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +++ YV+ PMR Sbjct: 351 VE---------QESDKTYKYVVTPMR 367 >gi|296120310|ref|YP_003628088.1| DNA polymerase III, subunit beta [Planctomyces limnophilus DSM 3776] gi|296012650|gb|ADG65889.1| DNA polymerase III, beta subunit [Planctomyces limnophilus DSM 3776] Length = 377 Score = 240 bits (614), Expect = 2e-61, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 162/394 (41%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA------NDGLLEIKASGPE-IEI 53 M++ R+ + ++ + + +V L A ++ + + I Sbjct: 1 MQLVCPRAVLSAAFTVVGAVVPSRTPREILKNVKLDAVASGPGATSSAQLTGTDGDGTSI 60 Query: 54 TGAI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + V GS + L I+R+L D G V + G S F L + Sbjct: 61 RFDLTDVECKVGGSALLPTQRLTSILRELTDDTVSLEV----NGDAVWLRCGGSEFRLSA 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++FP+ E F + + V + L++RT FA E RY L G+ I + +++ Sbjct: 117 EDPADFPTAPEFVEEDYFVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRM- 175 Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 ATD RLAVA + ++ +VP KA+ I + L + ++V +++ + I Sbjct: 176 -AATDSRRLAVAVGACSVEGQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDIS 234 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + S++ +L+ G FP+Y+ VIP + E+ + + AV + ++++ + V + Sbjct: 235 IRAGRASITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFT 294 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + L + D+G++ + + Y + I F+ +++ + + + V + Sbjct: 295 FAEGTLRLASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFLRVLEGS----STVHLK 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 L + S D + YV+MP+ Sbjct: 351 LINDESPGVFTTDD-----------DYTYVIMPL 373 >gi|212659801|gb|ACJ36980.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 270 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 92/270 (34%), Positives = 154/270 (57%), Gaps = 5/270 (1%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSI 67 L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G I Sbjct: 5 KTFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEI 64 Query: 68 TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV 127 T+ A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 65 TIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVT 121 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E + Sbjct: 122 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETE 179 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 + II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP Sbjct: 180 LEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFP 239 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 +Y+ VIP D+E++V LR A+ R +I Sbjct: 240 DYEGVIPIGADREVKVAREVLRDALQRAAI 269 >gi|295698377|ref|YP_003603032.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola USDA] gi|291156994|gb|ADD79439.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola USDA] Length = 367 Score = 240 bits (613), Expect = 2e-61, Method: Composition-based stats. Identities = 101/386 (26%), Positives = 185/386 (47%), Gaps = 20/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ + + + + K T +LL D +L + EI I + Sbjct: 1 MKFIIQKEILFKSMKKIYGVANSKITNFSCDKILLSVKDNILSLTYLDSEIGIIAKVKLM 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSI VS ++I Q ++I FF + + I +G S F + F E +FP Sbjct: 61 YSDQDGSIVVSIRKFFNICLNSQPKSKIYFFFNKKN---LIIFYGRSKFSILVFSEFDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 +F+++ K L+ T +M ++ RYYLN + E +K+ V+TDGH Sbjct: 118 KLVIWNANSNFKISQMEWKRLILSTKISMGFQDARYYLNSMLLEKRENYIKM--VSTDGH 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+ + V I S+++ R+++ E L++L + D ++V + E ++I ++S Sbjct: 176 RLSASYVKIQFGSQNDFSVLLSRRSIVECLKLLENNDDFLQVFIGEKDFRMDINNISFHA 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G FPNY++V+ + K + VN ++ R I+ + + Q ++ + +T Sbjct: 236 KLINGNFPNYESVLSRNKKKIVTVNRILFKEMCSRALILLNDKNQNACFVFENNLIRITT 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 N D G+ ES++ Y + P+ I N KY+L++++ I + V + S S + I Sbjct: 296 KNFDQGEYEESIDSQYQDSPVKIYLNIKYVLDVLNIIQC-----ENVKIEITDSISYIRI 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +G + +FYV+MP+RI Sbjct: 351 QGI---------SNRLSFYVIMPIRI 367 >gi|294101017|ref|YP_003552875.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM 12261] gi|293615997|gb|ADE56151.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM 12261] Length = 383 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 175/391 (44%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M++ V + D +++ R+ K+TI +L + +D L ++A+ + I Sbjct: 1 MRLQVSKPDFMKIWQTTERVTSTKSTITSLAGILCRTDDASLTLEATDLKTSIKCIASGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G + ++ ++ +K KE + I G + + ++P EFP Sbjct: 61 QIEEGGEAILPVKVVGELFKKAPTDTFTVSVKEG----KGIIFAGRNTYRFSTYPVEEFP 116 Query: 120 STKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 E F A ++ + L E T + EE YL F + D+++ V+TD Sbjct: 117 HLPSSENAKFFCTVKAETLAQILSEGTVASTLGEEFPKYLGAALFELKGNDIRI--VSTD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL 235 G RL++++V ++ + I++P + E+LR LSS D V++ ++ + + + Sbjct: 175 GRRLSLSKV-LLDEYGDTEKILLPLAGLKELLRQLSSLEGDKPVQILHDDALAYFQMGDI 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK- 294 S+R I+ FPNY+ ++ + L + + L +A++RV ++ + V LS + Sbjct: 234 EFSIRKIESSFPNYEKILNPQSTTTLTIERSALTEALERVDVVVRDHTRMVIFKLSPNGD 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L M P++G+A E ++ + P+ I FN YLL+ + + + V Sbjct: 294 LRMMGRAPEIGEAEEILDAQIDGEPLLIAFNVAYLLDGLKALHGESVF------------ 341 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G + + + + Y+LMP+++ Sbjct: 342 --ITFNGPEGQMSMLRPGRDDFLYMLMPIKL 370 >gi|329576317|gb|EGG57832.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1467] Length = 304 Score = 240 bits (613), Expect = 3e-61, Method: Composition-based stats. Identities = 76/289 (26%), Positives = 144/289 (49%), Gaps = 13/289 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV+RS L+ L R I K TIP+ V + ++ L + S +I I + Sbjct: 1 MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60 Query: 61 -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 ++ GSI + + +I+RKL + +N +V I+ G ++F + Sbjct: 61 DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDN---NQVAITSGKADFTVNGL 117 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 +P + +L +L ++ T FA++ E R L G+ F + E+ KL A Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL+ + Q + +I++P K++ E+ R L++++ V++S+ E+++ E Sbjct: 176 VATDSHRLSQRVIP-TEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282 ++ RL++ +P+ +IP S++ ++ L A++R S++S R Sbjct: 235 TMYFYSRLLEVHYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHER 283 >gi|78187986|ref|YP_378324.1| DNA polymerase III, beta chain [Chlorobium chlorochromatii CaD3] gi|78170185|gb|ABB27281.1| DNA polymerase III, beta subunit [Chlorobium chlorochromatii CaD3] Length = 374 Score = 240 bits (612), Expect = 3e-61, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 171/388 (44%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + E + + I K+ ++ L + + E+ IT I Sbjct: 1 MKILSSIRQLQEPVAKVAQAIPSKSVDGRYDNIHFTLEPNALTLFGTDGELSITAKIEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESEF 118 G I ++A L D +R + D + E+ V ++ + + ES+ Sbjct: 61 STDSGHIGINARTLQDFLRSMYDTPVTLSIERQEISDHGMVEVTTDKGRYKIVCLFESKP 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + Y + +L +S L LV++T FA + + +R + G+ F + E + AVATDG Sbjct: 121 ERYDKV-YDITLDLPTSELLGLVQKTLFACSIDGMRPAMMGVLFEL--EGTTITAVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL + IA+ I++P + + + ++ + ++ VS + + + Sbjct: 178 HRLVRCRKESSLDIAEKQKIVLPARVLSILQKLAQHESITMCVSTDRRFVRFISGHMILD 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY VIP +DK + +N + +V RV SS+ ++L L +D+L + Sbjct: 238 AALIVEPYPNYNAVIPVEHDKNVVINRQSFYDSVRRVGRFSSIDD--IRLILENDRLTVM 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N G+ A E + YN PM I FN K++ + ++ D+E++ L S ++V Sbjct: 296 AENTSDGEAAQEELPCSYNGEPMTIGFNAKFVEAALAHLD-----DEEILIELKSPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +++ ++MP+RI Sbjct: 351 IFTS------SKIEDRDKLIILVMPVRI 372 >gi|212659784|gb|ACJ36976.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 265 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 5/266 (1%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 64 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ II Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 178 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP D+ Sbjct: 179 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 238 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQA 285 E++V LR A+ R +I+S+ + + Sbjct: 239 EVKVAREVLRDALQRAAILSNEKYRV 264 >gi|126640117|ref|YP_001083101.1| DNA polymerase III [Acinetobacter baumannii ATCC 17978] Length = 305 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 95/323 (29%), Positives = 169/323 (52%), Gaps = 30/323 (9%) Query: 75 YDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELA 133 +I + L A I + + G+S F L + P ++P E ++ Sbjct: 1 MEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAEDYPLLTTENSQGTQVQVT 58 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 LK L E+T FAMA +++R+YL G I+E L+ AV TDGHRLA+ E+ + + Sbjct: 59 QRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTTDGHRLALCEILASSTSS 116 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-----------LSMSVRLI 242 ++ IVPRKAVGE+ R+LS +D + + + +++ I + + + +LI Sbjct: 117 QLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITVRFTTKLI 176 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302 DG+FP+Y+ VIP DK + + +Q++ RV+I+S+ +++ V L+ + D L + +NP Sbjct: 177 DGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNP 236 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + +AIE + + Y P+++ FN +YLL+++ + D+V + +N SV ++ Sbjct: 237 EQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDG-----DDVNMSMTEANQSVLVQDP 291 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 + YV+MPMR+ Sbjct: 292 ---------AHPDQTYVVMPMRV 305 >gi|329121619|ref|ZP_08250240.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM 19965] gi|327468774|gb|EGF14251.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM 19965] Length = 369 Score = 239 bits (610), Expect = 6e-61, Method: Composition-based stats. Identities = 85/386 (22%), Positives = 167/386 (43%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI ++ D++ L R + K T + + A D +E +A+ + I A Sbjct: 1 MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G ++A L +R + K+NE T V G + +FP Sbjct: 61 IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQYIAKFPTRLHDDFPE 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + L L + +A A ++ + GI F I ++ K AT+ HR Sbjct: 119 ILNMQNTSKAILKCKDLVEMTNLVQYAAANDKQKPLFTGILFEIKDK--KFIMAATNTHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LAV E+++ IIVP + +++++L +D V+++ +++ + + Sbjct: 177 LAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFTFNNTYFIT 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 LI+GE+P+Y+ VIP D + + AV VS +S Q + S+DKL + Sbjct: 237 SLINGEYPDYKRVIPSHFDAKAELYLNEFIDAVRFVSPISRDVNYQTINFFFSNDKLEIY 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD+GK+ ++ + ++I FN Y+ +I+ + ++++ + + N + Sbjct: 297 EEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKIILNLIK------NGPML 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 + +++ YV+ PMR Sbjct: 351 VE---------QESDKTYKYVVTPMR 367 >gi|260174985|ref|ZP_05761397.1| DNA polymerase III, beta chain [Bacteroides sp. D2] gi|315923219|ref|ZP_07919459.1| conserved hypothetical protein [Bacteroides sp. D2] gi|313697094|gb|EFS33929.1| conserved hypothetical protein [Bacteroides sp. D2] Length = 371 Score = 239 bits (610), Expect = 7e-61, Method: Composition-based stats. Identities = 93/387 (24%), Positives = 178/387 (45%), Gaps = 20/387 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 M+ITV ++ +L+ L RII+ KN+IP + L ++ + + +G E I+ I Sbjct: 1 MEITVSKTALLDKLKSIGRIIQPKNSIPAYDNFLFVVDEFGIILVTAGEEGGRISTNIDG 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D S +A L D ++++ + E E + + + + F + ++ Sbjct: 61 KTDFTDRSFMANAKTLLDGLKEIPEQPLTIHLYEKE----LVVKYANGKFSIPVEKGDQY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ + ++ + L + + F A +E+R LNG++F I+ ++ + VATDG Sbjct: 117 PTMSTDNTATPLLVSGNDLLYGIRQVLFCSANDELRPVLNGVYFDIDLDN--ISFVATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+ E + + I+P K + I+ V++S++++ I +S + Sbjct: 175 TRLAMIENPSAYTRKERAAFILPSKFAKVLSNIVPEDCMEVEISVNQTNILFEFDSYRLI 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I+G FPNY+ VIP + T++ A+ RVS+ V L D L +T Sbjct: 235 CRMIEGRFPNYRAVIPQKQPNRAVLKRTDIVSALKRVSVFCDENSSLVILKFCPDSLKIT 294 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D K+ E C ++I F +L+E+I+NI S +++ + + + Sbjct: 295 AHNLDFCKSAEETVALRTGCDIEIGFKSSFLIEMINNIPS-----EDIAITMSDPSKASI 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D++ + + Y+LMP+ I Sbjct: 350 LTRCDEEVR-------SLTYLLMPLSI 369 >gi|212659799|gb|ACJ36979.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 263 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 153/268 (57%), Gaps = 5/268 (1%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69 L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ Sbjct: 1 FLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITI 60 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 61 PARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTER 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 IIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELE 175 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y Sbjct: 176 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 235 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSI 277 + VIP D+E++V LR A+ R + Sbjct: 236 EGVIPIGADREVKVAREVLRDALQRAQL 263 >gi|212659819|gb|ACJ36984.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 264 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 91/269 (33%), Positives = 154/269 (57%), Gaps = 5/269 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 + L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT Sbjct: 1 NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 + A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 61 IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+ Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 Y+ VIP D+E++V LR A+ R + Sbjct: 236 YEGVIPIGADREVKVAREVLRDALQRAQV 264 >gi|212659810|gb|ACJ36982.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 264 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 91/268 (33%), Positives = 153/268 (57%), Gaps = 5/268 (1%) Query: 10 ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69 L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ Sbjct: 1 FLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITI 60 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 61 PARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTER 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 IIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELE 175 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y Sbjct: 176 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 235 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSI 277 + VIP D+E++V LR A+ R + Sbjct: 236 EGVIPIGADREVKVAREVLRDALQRAQL 263 >gi|328885264|emb|CCA58503.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC 10712] Length = 376 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 76/384 (19%), Positives = 146/384 (38%), Gaps = 27/384 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + E + A R++ ++ +PV +LL+A DG L + E + A Sbjct: 11 MEFRIDSGVLTEAVAWAARVLPARSPMPVLGGLLLEATDGGLRVSGLDHEASARVEVEAD 70 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V L DI + L G + G ++++ GD+ F L P ++P+ Sbjct: 71 TAVEGRALVLGRRLLDICKVLPRGVTELAVE----GARLSVTSGDARFGLSLLPLEDYPA 126 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 V V + A ++ L GI ++ + L ATD +R Sbjct: 127 PPALPEVRGQV-DGDAFAAAVGQVAVAAGRDDSLPVLTGIRLALDGTTMTL--AATDRYR 183 Query: 181 LAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 AV ++ + ++VP K + EI R L+ +++L + + L + Sbjct: 184 YAVRTLEWKPEAGGGTPADVVVPAKRLTEIARSLAGA-GPARLALDDGSVGFESGGLRTT 242 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL+DG P + + + L +AV RV++++ V+L+ + L + Sbjct: 243 TRLLDGRLPRHDKLFALGDPALATTARAPLTEAVKRVAVVAEGDS-PVQLAFTPTSLHLQ 301 Query: 299 VDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + A + + + + FN YLL+ + + + EV F L Sbjct: 302 A-GYEDDIASQRLPATLTGADTLTVAFNPGYLLDALTALDA-----PEVHFHLLGPGQRA 355 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLM 381 + + ++LM Sbjct: 356 LLTNGPTPTH---------RHLLM 370 >gi|258646403|ref|ZP_05733872.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470] gi|260403804|gb|EEW97351.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470] Length = 369 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 83/386 (21%), Positives = 162/386 (41%), Gaps = 21/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + D+ L R + K T + + A DG +E +A+ I I A Sbjct: 1 MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIGIRTFCEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS+ +S+ L ++ + G + K+ E + V G N + + +EFP Sbjct: 61 VEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGE--STVFFKAGQYNSHFPTRDTAEFPL 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E ++ + + +V FA +T+ GI INE AT+ HR Sbjct: 119 VTEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINEN--VFTMAATNSHR 176 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 LA E+ + + IV + +++R+L +D +++S + + + Sbjct: 177 LAAREISLEEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLS 236 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298 LI+G +P+Y+ V P S D ++ + +AV VS +S + + + L Sbjct: 237 NLINGVYPDYKRVFPSSFDLNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAF 296 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++PD+G++ S+ + + I FN Y+ +I+ + ++++ N + Sbjct: 297 EEDPDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKIILH------VKKNGPMV 350 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + YV+ PMR Sbjct: 351 VEQEEDKA---------YRYVVTPMR 367 >gi|212659788|gb|ACJ36978.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 263 Score = 238 bits (609), Expect = 8e-61, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 5/266 (1%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 3 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 62 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 63 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 119 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ II Sbjct: 120 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 177 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 +PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP D+ Sbjct: 178 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 237 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQA 285 E++V LR A+ R +I+S+ + + Sbjct: 238 EVKVAREVLRDALQRAAILSNEKYRV 263 >gi|288573678|ref|ZP_06392035.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans DSM 11002] gi|288569419|gb|EFC90976.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans DSM 11002] Length = 386 Score = 238 bits (608), Expect = 1e-60, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 177/391 (45%), Gaps = 26/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+T++++ ++ A R+ +K+T+ V +L A DG + ++A+ + + Sbjct: 1 MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++D G + ++ ++ +K E G + G + + ++P +FP Sbjct: 61 TIDEPGKAVLPIKVVGELFKKSPTSIFTVEVAERGTGI---LLSGRNRYRFTTYPADDFP 117 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATD 177 E F LA L +++ A + E YL + + V+TD Sbjct: 118 PLPSPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGEC--HCVSTD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235 G RL++++ + + + +++P +V E LRILS +D V VS+ + + ++SL Sbjct: 176 GRRLSLSKAYVDKENPEQ-DMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQLDSL 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK- 294 SVR +D FPNY+ ++ + L V+ + A++RV ++ + V L LS Sbjct: 235 EFSVRRVDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSPGGD 294 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ P++G+A E ++ + + FN +L++ + D+V Sbjct: 295 LKLSGRAPEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKV------------- 341 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ G++ + N+ + Y+LMP+++ Sbjct: 342 -SLSFNGQEGQMMMLRPNESDFLYMLMPIKL 371 >gi|332798025|ref|YP_004459524.1| DNA polymerase III subunit beta [Tepidanaerobacter sp. Re1] gi|332695760|gb|AEE90217.1| DNA polymerase III, beta subunit [Tepidanaerobacter sp. Re1] Length = 381 Score = 238 bits (607), Expect = 1e-60, Method: Composition-based stats. Identities = 87/397 (21%), Positives = 165/397 (41%), Gaps = 33/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + R+++ + + + K I + + A D L + A+ ++ I I Sbjct: 1 MKIVISRNELASGISAVEKFVPSKTPISILTGIKFSAYDDFLCLSATNLDMGIEYKIKNE 60 Query: 61 VD-----VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 D GSI + + +L +IVR++ + +EN + IS G N L F Sbjct: 61 SDKLSILEGGSIVIGSKILSEIVRRISENTVEFDIREN----KAYISSGQFNMVLPCFDA 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAV 174 +FP L S+ K++++RT +A A + R L G I+ +D L V Sbjct: 117 MDFPEISRNNSSDGIRLRQSMFKDMIKRTIYARADDTTSRPQLTGAL--IDYKDNILNMV 174 Query: 175 ATDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHL 230 A DG R+A + A + IVP + EI RI + + ++ S++ + Sbjct: 175 ALDGFRIAWCCEQLNETEASDIREFKTIVPGDTLLEISRIFEDDEQAYFELYASKNSVEF 234 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKL 288 E ++ R++DG+F +Y+ V+ V LR AV+R S+++ VK Sbjct: 235 LTEKFLITSRVLDGDFIDYKTVMQIKPKTTAIVPTDELRLAVERASVLAREGNTNNLVKF 294 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++ + + + V+ ++G+ + + M I FN + ++ + I S + + Sbjct: 295 YIAENSIEVQVE-TELGRITDKVLCSTEGEEMLIAFNAGFFIDALKTIFSPK-----IKL 348 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + D+ N ++P+R+ Sbjct: 349 HFSDETGPCIITALETDNHKNF---------ILPVRL 376 >gi|319654505|ref|ZP_08008589.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] gi|317393815|gb|EFV74569.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] Length = 374 Score = 237 bits (606), Expect = 2e-60, Method: Composition-based stats. Identities = 69/396 (17%), Positives = 156/396 (39%), Gaps = 36/396 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + S + + L +++ K+ IP+ + ++A + L S +P Sbjct: 1 MHIKINHSVLSDALKKVEKVVNAKHNIPILQGIYMEATNEELIFIGSDSNESFRFHVPVE 60 Query: 61 VD-----VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + + + V++ + + G + + G S F L +F Sbjct: 61 GENVEVYEPGKTVLP-KQVTETVKRFKKDITLKL-----DGFTLLLQSGRSKFNLNTFDP 114 Query: 116 SEFPSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP + + L + L NL+++T FA A EIR L G+ ++ + + V Sbjct: 115 EEFPKLPDFAIEESTLFLKGTDLSNLIKKTGFAAADSEIRPILTGVCLDLSGDC--MQMV 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRL +V + ++P K++ ++ + ++ SE+++ S Sbjct: 173 CTDSHRLGKVQVR--NTSDRDLKFVIPAKSLDKLNKTFDLQEDVHIYCESENQLIFRSGS 230 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA----VKLSL 290 L RL++G +P+ +IP E+++N ++ + +++ +KL + Sbjct: 231 LVFYCRLLEGTYPDTSRLIPQDFKAEMKINRKVFLDEIEIIRGIANNADNGQGGVIKLHV 290 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + ++ GK ++ I F+ KY+++ + I D+ + F Sbjct: 291 -NGAATISSYTAQTGKGESVVDYESLEGEDNFTISFSGKYIVDALKAID-----DEFISF 344 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + + + + +++P+R Sbjct: 345 KFNGEMRPFLLTPCESEYEE--------LQLVLPVR 372 >gi|325282257|ref|YP_004254798.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP] gi|324314066|gb|ADY25181.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP] Length = 360 Score = 237 bits (605), Expect = 2e-60, Method: Composition-based stats. Identities = 83/365 (22%), Positives = 177/365 (48%), Gaps = 22/365 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TV + + E LG R++ +++ P+ + ++A + L + + E+++ PA Sbjct: 1 MKATVTKKVLSEGLGLLERVVPSRSSNPLLTSLKIEATEQGLHLSGTNLEVDLASFAPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V + V AHLL IVR L G + G E+++ G S+F +Q+ + FP Sbjct: 61 VQNPQAFVVPAHLLSQIVRTL-GGELVELEL---SGDELSVRSGGSDFKIQTGDVAAFPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + +S L + +A + E + G+ + ++ VA+DG+R Sbjct: 117 L-NFPSQVDATVEASDLARALNSVRYAASNEAFQAVFRGVKLEKRDNGARV--VASDGYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + + ++ + +I+P ++V E++R+L +D K+S E ++ + + + M+++ Sbjct: 174 VALHDFALEGEVRE---LIMPARSVDELVRML--RDGEAKLSYGEGQLSVTTDRVRMNLK 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 L+DGEFP+Y+ VIP ++++ +L+++V RV++++ V+ ++ +L + Sbjct: 229 LLDGEFPDYERVIPTDTKLQVKLPSGSLKESVGRVAVLADKNANNRVEFLVTEGQLQLNA 288 Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D G+A ++++V + + + FN KY+ + + I E S Sbjct: 289 EG-DYGRAHDTLSVEQSGTEPAISLAFNAKYVQDALGPIEG------EAEMLFAESTKPA 341 Query: 358 FIRGK 362 R Sbjct: 342 IFRPA 346 >gi|212659814|gb|ACJ36983.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 265 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 90/270 (33%), Positives = 155/270 (57%), Gaps = 5/270 (1%) Query: 16 HACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLY 75 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y Sbjct: 1 LIVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPARKIY 60 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135 +IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A Sbjct: 61 EIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERIIIAEV 117 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 LLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLK 175 Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP Sbjct: 176 RQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPI 235 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 D+E++V LR A+ R +I+S+ + + Sbjct: 236 GADREVKVAREVLRDALQRAAILSNEKYRG 265 >gi|281419998|ref|ZP_06250997.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205] gi|281405798|gb|EFB36478.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205] Length = 360 Score = 237 bits (605), Expect = 3e-60, Method: Composition-based stats. Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 18/369 (4%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYD 76 ++I KN++P+ L Q +G + I AS + I + D G V ++ D Sbjct: 3 AKVIGSKNSLPILDCFLFQVANGEMSITASDSDNVIKSTLALTDHDGEGEFCVPNRVILD 62 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV-YSFELASS 135 +++L + + I + + + E+P T+ + L + Sbjct: 63 ALKELPEQPLHFDVDAAGEAVAIKIVYQNGLYNFTGQSAEEYPRTQSMNDACTTVSLPTE 122 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 +L N + R+ FA A++E+R +NGI+F + + L VA+DGH+L V + + Sbjct: 123 MLINNISRSLFATASDELRPVMNGIYFDLTADA--LAIVASDGHKL-VRSKNFTIKSESP 179 Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 + +P+K + ILS + + + M RLIDG +PNY +VIP Sbjct: 180 SAFNLPKKPASLLKNILSKDGDDAIIKFDDRSAEIQFTDGVMRCRLIDGRYPNYNSVIP- 238 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVY 314 +N E+ V+ L+ A+ RV +S Q ++ + S + ++ ++ D A E ++ Sbjct: 239 NNPNEVTVDRRGLQSALRRVLPFASESSQLIRFHIESGRFEVSSEDIDFSTSAKEQLSCE 298 Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 YN P+ I F L+EI+ N++S D ++ +L + + I ++ Sbjct: 299 YNGSPISIGFKGSSLMEILSNLTS-----DNIIIQLADPSRAGIIVPAEQP------ENE 347 Query: 375 NAFYVLMPM 383 + ++MPM Sbjct: 348 DILMLIMPM 356 >gi|55979970|ref|YP_143267.1| DNA polymerase III subunit beta [Thermus thermophilus HB8] gi|55771383|dbj|BAD69824.1| DNA polymerase III, beta subunit [Thermus thermophilus HB8] Length = 375 Score = 237 bits (604), Expect = 3e-60, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 177/396 (44%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ITV + + + L RI+ ++ P+ ++ L A +G L + + E+++ +PA Sbjct: 1 MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V A + +VR L D + E G ++ +S G L P +P Sbjct: 61 AQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEGYP 120 Query: 120 ST--KEEEYVYSF----ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E E +F + S L + +A + EE R G+ + + + A Sbjct: 121 ELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR--A 178 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232 VA+DG+RLA+ ++ + +VP ++V E++R+L D ++L E + L + Sbjct: 179 VASDGYRLALYDLPLPQGF--QAKAVVPARSVDEMVRVLKGADGAEADLALGEGVLALAL 236 Query: 233 E---SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 E + M++RL++GEFP+YQ VIP +++V LR+AV RVS++S + V L Sbjct: 237 EGGSGVRMALRLMEGEFPDYQRVIPQEFALKVQVEGEALREAVRRVSVLSDRQNHRVDLL 296 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ ++ + D GK E + M + +N +YLLE + V D Sbjct: 297 LEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALA------PVGDRAHLG 349 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S I G + V++P+R+ Sbjct: 350 ISGPTSPSLIWG----------DGEGYRAVVVPLRV 375 >gi|86739451|ref|YP_479851.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3] gi|86566313|gb|ABD10122.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3] Length = 433 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 95/445 (21%), Positives = 158/445 (35%), Gaps = 77/445 (17%) Query: 1 MKITVERSDILELLGHACRIIERKN--TIPVSCHVLLQANDGL----------------- 41 M+ +VER + G A R + + V +LL A G Sbjct: 1 MRFSVERDAFADATGWAARHLPNRPGPARNVLTGILLAAGHGSPASPGSAAVPLPSGSAA 60 Query: 42 ------------------------------LEIKASGPEIEITGAIPASVDVCGSITVSA 71 L I A E+ + + ASVD G + V Sbjct: 61 SPGSAAVPLPSGSAASPGSAAPLGAATASVLTICAYDTEVAVRAPVAASVDEPGRVLVPG 120 Query: 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131 LL DIVR L + G + + G F + E+P E Sbjct: 121 RLLTDIVRSLPA----TTVDVVVDGDRLVLRCGSVRFTVPLMDPGEYPQLPSFPGPIG-E 175 Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 + + + V + A +E L + I+ L L VATD +RLAV + Sbjct: 176 VDTLGFASAVGQVAPAAGRDETMPVLTAVRMEISGRGLAL--VATDRYRLAVRGIPWQPT 233 Query: 192 IAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESLSMSVRLIDGE 245 + ++ VP K + E+ R +S S + + L +R+ L VRLI+G Sbjct: 234 VDDPWALAHVPAKVLAEVARTPTSA-SRIVIGLDLDDPSGARLGLAAGGRQTIVRLIEGT 292 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 FPNY+ ++P + T A R + + R ++ + + +++ + Sbjct: 293 FPNYRKLLP-EAAALVVTAQTAALAAAVRRVAVVATRTGPLRFTFTHNQVVAEAGDGGGA 351 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS------SNSSVFI 359 +A E++ V Y + + FN YLL+ + V DD+ + + Sbjct: 352 QASETIPVEYAGPELSVLFNPSYLLDGLGA-----VEDDQATIGFVDDDPVEAAAKPAVL 406 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 GKD S ++ Y+LMP+R Sbjct: 407 TGKD--SGRGAVDEGAYRYLLMPIR 429 >gi|284109083|ref|ZP_06386475.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp. WGA-A3] gi|283829830|gb|EFC34123.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp. WGA-A3] Length = 281 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 20/293 (6%) Query: 99 VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158 V I G F + P +FP E L L L+ +T FA+ + RY LN Sbjct: 3 VTIKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLN 62 Query: 159 GIFFHI--NEEDLKLCAVATDGHRLAVAEVDIVAQ----IAKMPSIIVPRKAVGEILRIL 212 G+ + E + V TDGHRLA+AE + + + +IVP+KA EI R+L Sbjct: 63 GLLIVVTTEGESPMIRLVGTDGHRLAMAEQKLETDAKAPVEQEQKVIVPKKAAAEIRRLL 122 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 + +++ + L ++ RL++G +PNYQ V+P +++K++ N +L A+ Sbjct: 123 EEGGDEPMIGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEGAL 182 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 RVS++S + AVKL+ S + + +PDMG+A + + + FN +YLL++ Sbjct: 183 RRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLLDV 242 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + S + VV +++S S IR +D V+MP+++ Sbjct: 243 LGVMES-----ETVVLNMEASLSPCLIREEDNPLFQA---------VVMPVKV 281 >gi|32266625|ref|NP_860657.1| DNA polymerase III subunit beta [Helicobacter hepaticus ATCC 51449] gi|32262676|gb|AAP77723.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449] Length = 353 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 83/383 (21%), Positives = 174/383 (45%), Gaps = 32/383 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ +S + +L + +++++ ++ H+ +A D L +KA+ EI + I Sbjct: 1 MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYINIP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ TV+ + DI+++L+D K++ ++IS G + L F EFP Sbjct: 61 CQAQGNATVNGKQILDIIKRLKDDNVTIETKQDS----LHISQGKARTKLPMFNADEFPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + S N +++ + A+ T +Y LNG I D VATD R Sbjct: 117 FPEYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDIK--DYSFNFVATDTRR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++ S+++P+KA+ EI ++ ++++ + + + L + + Sbjct: 175 LAL--IEYKNPSINALSLVIPKKAINEIQKLFVD---TLEIYHNPTHLILKNNDYTFYTK 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI G++P+Y+ +IP ++ + A+ V ++ +K++LS +++ Sbjct: 230 LISGKYPDYEKIIPKEFKHKIVLPKDKFVDALQFVKSLA----NNIKITLSPNEVLFESL 285 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + G+A + V N + + N KY+L+ + I ++ E ++ N+ + Sbjct: 286 NEESGEASTQIEVQTNIENLTLGINSKYILDFLSQIDAN-----EFTLCINEPNTPFVVM 340 Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383 + N V+MP+ Sbjct: 341 SE------------NFSTVIMPV 351 >gi|46199911|ref|YP_005578.1| DNA polymerase III, beta chain [Thermus thermophilus HB27] gi|46197538|gb|AAS81951.1| DNA polymerase III, beta chain [Thermus thermophilus HB27] Length = 375 Score = 236 bits (603), Expect = 4e-60, Method: Composition-based stats. Identities = 99/396 (25%), Positives = 176/396 (44%), Gaps = 32/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M ITV + + + L RI+ ++ P+ ++ L A +G L + + E+++ +PA Sbjct: 1 MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V A + +VR L D + E G ++ +S G L P +P Sbjct: 61 AQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEGYP 120 Query: 120 ST--KEEEYVYSF----ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E E +F + S L + +A + EE R G+ + + + A Sbjct: 121 ELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR--A 178 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232 VA+DG+RLA+ ++ + +VP ++V E++R+L D ++L E + L + Sbjct: 179 VASDGYRLALYDLPLPQGF--QAKAVVPARSVDEMVRVLKGADGAEADLALGEGVLALAL 236 Query: 233 E---SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 E + M++RL++GEFP+YQ VIP ++V LR+AV RVS++S + V L Sbjct: 237 EGGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRVDLL 296 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L ++ ++ + D GK E + M + +N +YLLE + V D Sbjct: 297 LEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALA------PVGDRAHLG 349 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S I G + V++P+R+ Sbjct: 350 ISGPTSPSLIWG----------DGEGYRAVVVPLRV 375 >gi|212659807|gb|ACJ36981.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 262 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 90/266 (33%), Positives = 152/266 (57%), Gaps = 5/266 (1%) Query: 12 ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71 + L H ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A Sbjct: 2 KPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPA 61 Query: 72 HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131 +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 62 RKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERII 118 Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 119 IAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQA 176 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ Sbjct: 177 KDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEG 236 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSI 277 VIP D+E++V LR A+ R + Sbjct: 237 VIPIGADREVKVAREVLRDALQRAQL 262 >gi|149180587|ref|ZP_01859091.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] gi|148851740|gb|EDL65886.1| DNA polymerase III subunit beta [Bacillus sp. SG-1] Length = 374 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 177/394 (44%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ + + L R+I ++PV V ++A+ L + ++ I I Sbjct: 1 MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G + V +++++K+ D I K N+ +V I+ G+ L Sbjct: 61 QADAGRIIAPGKLVVPVRYFHNLIKKMPDDTFIKIKKFNK---QVKITSGEIETTLSLLN 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E ++P E + S+L ++++T FA++ + R L G+ + +E L L + Sbjct: 118 EEDYPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTL--I 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 AT+ R+A+ + + + + S I+P KA+ E++ + K +++ S++ + + Sbjct: 176 ATNSQRMAMRKAAMSSPVTG--SFILPGKAMTELVNAI-DKHQFIQIYPSDNLVIFQADD 232 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS- 292 L + RLI G +P+ +IP E+ V+ L Q + R ++++S + V SL++ Sbjct: 233 LFLYTRLISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNE 292 Query: 293 DKLCMTVDNPDMGKAIESM-NVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ +T ++G E + + + I F+ K+L E + ++S ++ V Sbjct: 293 GRIQLTSSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMS-----EELVSLSF 347 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + I+ NK + +++ P+R Sbjct: 348 GGSLRPIIIKP---------YNKKSTIHLISPVR 372 >gi|224437091|ref|ZP_03658072.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818] gi|313143562|ref|ZP_07805755.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818] gi|313128593|gb|EFR46210.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818] Length = 353 Score = 236 bits (602), Expect = 5e-60, Method: Composition-based stats. Identities = 89/383 (23%), Positives = 173/383 (45%), Gaps = 32/383 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI++ +S + L + +++++ ++ H+ +A D L +KA+ EI + I Sbjct: 1 MKISLPKSLLETALTNCQNFLDKRDRSQITSHICFEAKDDKLILKATDYEIWLESHINIQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ T + + DI+++L+DG KE+ ++IS G S L F EFP Sbjct: 61 PQAQGNATANGKQILDIIKRLKDGDINLEAKEDT----LHISQGRSRTKLPMFNADEFPR 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + + ++R + A+ T +Y LNG I E VATD R Sbjct: 117 FPEYDNNAQINIEAQKFLTSLKRINPAVDTNNPKYELNGSLLDIKEYG--FNFVATDTRR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV ++ +Q S+I+P+KA+ EI R+ +++ + + + L + + Sbjct: 175 LAV--IEYKSQSINALSLIIPKKAISEISRLFIDH---LEIYHNPTHLILKNNEYTFYTK 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FP+Y+ +IP ++ + A+ V ++ +K++LS +++ Sbjct: 230 LINGKFPDYEKIIPKEFKYKILLPKDKFVDALQFVKSLA----NNIKITLSPNEVLFESL 285 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 N + G+A + + + N KY+L+ + I + E F ++ SN+ + Sbjct: 286 NEESGEASTQIEAQTGIESLTLGINSKYILDFLSQIDGN-----EFTFCINESNTPFIVM 340 Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383 + N V+MP+ Sbjct: 341 SE------------NFSTVIMPV 351 >gi|193211678|ref|YP_001997631.1| DNA polymerase III subunit beta [Chlorobaculum parvum NCIB 8327] gi|193085155|gb|ACF10431.1| DNA polymerase III, beta subunit [Chlorobaculum parvum NCIB 8327] Length = 374 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 175/388 (45%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + E + + K+ ++ + +G L + A+ E+ IT + Sbjct: 1 MKFNTTIKRLQEAVSKVILAVPTKSLDARFDNINMTLENGTLTMFATDGELSITAKCDVA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118 G+I + A L D +R + D + +G V+I+ + + S+ Sbjct: 61 SSDKGTIAIRARTLQDFLRSMYDTEVTFEIERQSIGDLGTVHIATDKGRYRIPCTFISKP 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 S E + + L S L++++++T FA + + +R + G+ F E + AVATDG Sbjct: 121 ESL-ERNFDLTIGLQPSELQDIIQKTLFACSVDGMRPAMMGVLFEF--EGTVITAVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL +IA+ I+VP + + I R+L + + S+ V + E++ + Sbjct: 178 HRLVRCRKQTTNEIAEKQKIVVPARVLSIIQRLLQNDEVSMTVDEERRNVKFKSENVELE 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY+ VIP N+K+L V+ + +V RV SS I +K+S + + + Sbjct: 238 SALIVEPYPNYEAVIPVENEKKLVVDRGLIHDSVKRVGRFSS--IGDLKISAEGELMKVM 295 Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + A E + + + I FN K++ + +I + ++V + S ++V Sbjct: 296 AENASEGESAQEELPCTFTGEEITIGFNAKFVEAALSHIET-----EQVSMEMSSPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K ++ ++ + ++MP+RI Sbjct: 351 LFKPKYEERQD------DLIILVMPVRI 372 >gi|32490764|ref|NP_871018.1| hypothetical protein WGLp015 [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] gi|25165970|dbj|BAC24161.1| dnaN [Wigglesworthia glossinidia endosymbiont of Glossina brevipalpis] Length = 369 Score = 235 bits (601), Expect = 7e-60, Method: Composition-based stats. Identities = 110/390 (28%), Positives = 198/390 (50%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 MK ++ R IL L + + +IP+ ++L+ + + I + E EIT I Sbjct: 1 MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D G+ TVS + DIV+ + I+FF +NE ++ I S F L + P F Sbjct: 61 ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNE---KLFILCKKSKFVLCTLPYKNF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E ++ + LK L+E T+F++A ++IR YLNG+ I + +++ +V+T+G Sbjct: 118 PNLNNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIR--SVSTNG 175 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL+ +++ I I+ I+PR V +LRIL+ + V++ + E I +NIE ++ Sbjct: 176 HRLSKSKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILT 235 Query: 239 VRLIDGEFPNYQNVIPCS--NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 +L++GEFP Y+ + + N L V+C L+ + RVS++S + + + L+L + L Sbjct: 236 TKLLEGEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVIS-DKSKCINLNLKKNLLI 294 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + N + A E + Y M+I N Y+L+ ++ I S V + +S S+ Sbjct: 295 INIKNFNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESK-----RVKIFVTNSYSA 349 Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385 + + D N +++MPMR+ Sbjct: 350 IIL----------ADEIYNYTSHIIMPMRL 369 >gi|189345560|ref|YP_001942089.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245] gi|189339707|gb|ACD89110.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245] Length = 374 Score = 235 bits (600), Expect = 8e-60, Method: Composition-based stats. Identities = 92/388 (23%), Positives = 176/388 (45%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + + + + I K P +V L +G+L + A+ EI IT Sbjct: 1 MRFSSTIRQLQDAVTKVSQAIPAKTIDPRYDNVHLTLENGMLTLYATDGEISITAKCEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118 G+I + A L D +R + D + E V I+ + + ES+ Sbjct: 61 TADSGNIGIKARTLQDFLRSMYDTPVTFSIERQEISDHGTVFIATDKGRYKIPCLFESKA 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 T E+ Y +L ++ L++L+++T FA + + +R + G+ F I E + +VATDG Sbjct: 121 EKT-EKTYDIVLDLKTAELQDLIQKTVFACSVDGMRPAMMGVLFEIEENQIT--SVATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL I Q+ + I+VP + + I ++ ++ S+ + + ++ + Sbjct: 178 HRLVRCRKPITIQVEEKQKIVVPSRVLSIIQKLAQHENVSMSIDEERRTVCYICNNVVLE 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY+ VIP +DK++ T++ +V RV SS I +K+ +S + L + Sbjct: 238 AALIVEPYPNYEAVIPVEHDKKIVTQRTDIYDSVKRVGRFSS--IGDIKIEVSGEVLKIM 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A E + Y+ P+ I FN K++ + ++ + E+ L S ++V Sbjct: 296 AENTNEGESAQEDLPCSYSGDPIIIGFNAKFIEAALAHLD-----ESEITIELKSPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++MP+RI Sbjct: 351 IFKP------GIQKENEELIILVMPVRI 372 >gi|320103682|ref|YP_004179273.1| DNA polymerase III subunit beta [Isosphaera pallida ATCC 43644] gi|319750964|gb|ADV62724.1| DNA polymerase III, beta subunit [Isosphaera pallida ATCC 43644] Length = 378 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 166/388 (42%), Gaps = 23/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M+ +R +L + ++ P+ ++ A+ + A+ E+ I + Sbjct: 1 MRTLCDRDGLLVGFTMVSSVAPARSPRPILQNLKFVADPDGSLLLATDQEVGIRFRVLGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD G+ + + I++ +D E + G + + ++ F L FP Sbjct: 61 KVDQPGAAILPTQKMAQILKTSRDSEL---ALETDDGGSILVRGLNARFKLPGEDPDLFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +A++ LK L++RT FA E R+ L G+ F + E L V TDG Sbjct: 118 VFDDFTASAYHVVAAADLKKLIKRTIFATELESTRFALGGVLFEFSPEGNLLTGVGTDGR 177 Query: 180 RLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIESL 235 RLA +V + ++P KA+ + R L D V ++ S + + + + Sbjct: 178 RLAHTQVPAEPEGGVTPPAGQPVIPVKALKLLDRNLDDDDPPVHIAFPSPNAVVIRTDRS 237 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + RL++G FP Y++V P S + + + LR V++ +I++S + V + + KL Sbjct: 238 VIWSRLVEGRFPRYRDVFPTSCEARIPIEAGLLRSRVEQAAIVTSDESRGVDFTFADGKL 297 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + D G++ M + Y+ ++I F+ YLLE++ + +E + L + Sbjct: 298 TLAARAADSGESQVEMPIRYSGATIEITFDPTYLLEMLKVLPEEEEIVI----ELIDDKN 353 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + IR D+ Y+LMP+ Sbjct: 354 AAVIRHADR-----------YSYILMPL 370 >gi|226354812|ref|YP_002784552.1| DNA polymerase III subunit beta [Deinococcus deserti VCD115] gi|226316802|gb|ACO44798.1| putative DNA-directed DNA polymerase (DNA polymerase III, beta subunit) [Deinococcus deserti VCD115] Length = 360 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 22/366 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + + E L R+I +++ P+ + ++ + L + + EI+++ +PA Sbjct: 1 MKANVTKKTLSEGLSLLERVIPGRSSNPLLTALKVETTEAGLTLSGTNLEIDLSCFVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V + V AHL IVR L G + G E+++ G S+F LQ+ +P Sbjct: 61 VQQPQNFVVPAHLFAQIVRNL-GGELVELEI---TGNELSVRSGGSDFKLQTGDIEAYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E+ L + L +A + E + GI E ++ VA+DG+R Sbjct: 117 LSFPEHAD-VSLNAEELAKAFSSVRYAASNEAFQAVFRGIKLEHRPESARV--VASDGYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + ++I+P ++ E++R+L KD + + E + + + + M+++ Sbjct: 174 VAIRDFPA---SGDGRNLIIPARSADELIRVL--KDGEARFTYGEGLLSVTTDRVRMNLK 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 L+DG+FP+Y+ VIP ++ + T L++AV+RV++++ V+ +S KL + Sbjct: 229 LLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGKLRLAA 288 Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D G+A ++++V M + FN +++L+ + I D S S Sbjct: 289 EG-DYGRAQDTLDVVQGGSEPAMSLAFNARHVLDALGPIEGD------AELLFSGSTSPA 341 Query: 358 FIRGKD 363 R Sbjct: 342 IFRAAG 347 >gi|145218824|ref|YP_001129533.1| DNA polymerase III, beta subunit [Prosthecochloris vibrioformis DSM 265] gi|145204988|gb|ABP36031.1| DNA polymerase III, beta subunit [Chlorobium phaeovibrioides DSM 265] Length = 374 Score = 235 bits (599), Expect = 1e-59, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 176/388 (45%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + + +G + I K+ ++ L G L A+ E+ IT Sbjct: 1 MKLTSSIKQLQDAVGKVAQAIPAKSIDQRFENIHLSIEPGALTFFATDGEVSITARSEVE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118 G+I + A L + +R + D + + E VNI+ + + +++ Sbjct: 61 TSDSGNIGIRARALQEFLRSMYDTSVSFSIERQEVSEHGTVNIATDKGRYTMPCLFQAK- 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E+ Y S E+ + + +++++T FA + + +R + G+ F + + L A+ATDG Sbjct: 120 PEKHEKNYDISLEMETGEMLDIIQKTTFACSVDGMRPAMMGVLFELEGDLLT--AIATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL D + + I+VP + + + ++ ++ S+ + + N S+ + Sbjct: 178 HRLVRCRKDSSLCMPEKLKIVVPSRVLSILQKLAQTETVSMSIESERKFVRFNCGSIVLD 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY+ VIP +DK+L +N + + ++ RV SS I VK+ + L + Sbjct: 238 AALIIEPYPNYEAVIPVEHDKQLIINRSTIYDSIRRVGRFSS--IGDVKVQIEGAVLKIM 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A+E + Y + I FN ++L + ++ + EV L S ++V Sbjct: 296 AENTNEGESAVEELACNYTGEDISIGFNSRFLEAALAHLD-----ESEVSIELKSPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R + ++ ++MP+RI Sbjct: 351 IFRP------HLEEKSDRLIILVMPVRI 372 >gi|312195933|ref|YP_004015994.1| DNA polymerase III subunit beta [Frankia sp. EuI1c] gi|311227269|gb|ADP80124.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c] Length = 392 Score = 234 bits (598), Expect = 1e-59, Method: Composition-based stats. Identities = 92/409 (22%), Positives = 163/409 (39%), Gaps = 49/409 (11%) Query: 1 MKITVERSDILELLGHACRIIERK--NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58 M++TV R++ E G R + + I + + A L + A ++ +T + Sbjct: 1 MRVTVPRAEFAEAAGWVARHLPARMAPGIVAIAGMRVDA-GERLTLSAFDYQVAVTATVE 59 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 AS V G V L+ DI+R L D E + + +++ + P ++ Sbjct: 60 ASAAVPGGALVPGRLVADIMRSLPDETVRLSVDEG----WLLVRAAGAHYRVPILPLEDY 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ E+ + V + A A +E L + + L L VATD Sbjct: 116 PALPTFPPPVG-EVDTLGFAAAVNQVVPAAARDETFPVLTALRLELAGRGLTL--VATDR 172 Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSS-VKVSLSES---RIHLNIE 233 +RLAV + + ++ VP + + E+ RI ++ + + + R L+ Sbjct: 173 YRLAVRTIPWQPSVRDPEAVAHVPARLLAELARIPTAASRLALGLGADDDGGPRFGLSTG 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + + VRL+DG FP+Y+ + P S + L A+ RV++++ V+L+ S+ Sbjct: 233 ARRIVVRLVDGTFPHYRRLFPESVGLCVGAQIAPLAAAIRRVAVVAPRTGPVVRLTFSAG 292 Query: 294 KLCMTVDNPDMGK-------------AIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340 L V PD G A +S+ + Y+ + +N YLL+ + + Sbjct: 293 VLTADV-GPDAGTTTAGDSGPLSLAAATDSVPIDYDGPDLVAWYNPTYLLDGLGAVDG-- 349 Query: 341 VVDDEVVFRLDSSNS------SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 DEV +S+ I GKD D YVLMP+ Sbjct: 350 ---DEVTIGFAASDPDEAARLPAIITGKDDD---------GFRYVLMPV 386 >gi|241888986|ref|ZP_04776290.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379] gi|241864235|gb|EER68613.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379] Length = 379 Score = 234 bits (598), Expect = 2e-59, Method: Composition-based stats. Identities = 84/396 (21%), Positives = 182/396 (45%), Gaps = 31/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+ +S+ L+ L H R+I + + + ++ L +KAS + + ++ Sbjct: 1 MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 +++ G + + + +I+RK + +G + + G S F ++ Sbjct: 61 EDDKEVITIEEEGQVVLPSRNFIEIIRKAPTD----LIEIETVGNNILVKSGKSEFNVKG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 + +++P S +L ++V ++++ T F A + R L G+ F ++ + L Sbjct: 117 YDANDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNK--ILT 174 Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A ATD +RL+ +V + K ++I+PRKA+ R++ + V++ +RI L Sbjct: 175 ATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLY 234 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 +++ +V LI G +PN +IP + N AVDRV++MS + +KL + Sbjct: 235 YQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLVV 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + L ++ + ++G A+E + V + +I + KYL + + V +E++ Sbjct: 295 TDNLLEVSSQSKELGSAVEELKVSSTLEDEKFEISVSGKYLKD-----AVAAVAAEEIIV 349 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ I+ D + + +++P+R Sbjct: 350 KFSGELTAFIIQPSDYHREIIE--------LILPVR 377 >gi|212659823|gb|ACJ36985.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 265 Score = 234 bits (597), Expect = 2e-59, Method: Composition-based stats. Identities = 90/264 (34%), Positives = 152/264 (57%), Gaps = 5/264 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 + L+ L H ++ER+ T + ++L++ N+ L + + E+E+ G IT Sbjct: 1 NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 + A +Y+IVR L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E Sbjct: 61 IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 +A +LK L+ERT FAMA +++RYYLNG+ F + D KL VATDGHRLA+ E ++ Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+ Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235 Query: 249 YQNVIPCSNDKELRVNCTNLRQAV 272 Y+ VIP D+E++V LR A+ Sbjct: 236 YEGVIPIGADREVKVAREVLRDAL 259 >gi|21672842|ref|NP_660907.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS] gi|21645890|gb|AAM71249.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS] Length = 374 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 83/388 (21%), Positives = 179/388 (46%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + E + + K+ ++ L +G+L + A+ E+ IT + Sbjct: 1 MKFNTTIKRLQEAVNKVILAVPAKSLDARFDNINLTLENGMLTMFATDGELSITTNCDVA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118 G+I + A L D +R + + + +G ++I+ + + ++ Sbjct: 61 STDKGNIAIRARTLQDFLRSMYETDVTFDIERQSIGELGTIHIATDKGRYRIPCTFTTK- 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P +++ + S EL + L++++ +T FA + + +R + G+ F +EE + AV+TDG Sbjct: 120 PESQKRNFDLSIELQQNELQDMIHKTLFACSVDGMRPAMMGVLFEFDEE--YITAVSTDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL +A+ I+VP + + I R+L++++ + + + ++ + Sbjct: 178 HRLVRCRKKPGVTVAEKQKIVVPARVLSIIQRMLTNEEVKMTIDSERRNVKFKTATMELE 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY+ VIP N+K+L + + L +V RV SS I +K+S ++ + Sbjct: 238 SALIVEPYPNYEAVIPVENEKQLVTDRSQLHDSVKRVGRFSS--IGDLKISAQDSQIKVM 295 Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + A E + + + I FN K++ + +I + ++V + S ++V Sbjct: 296 AENASEGESAQEELPCTFTGEEITIGFNAKFVEAALSHIET-----EQVSIEMSSPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K ++ ++ + ++MP+RI Sbjct: 351 LFKPKYEERQD------DLIILVMPVRI 372 >gi|46578419|ref|YP_009227.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str. Hildenborough] gi|46447830|gb|AAS94486.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str. Hildenborough] gi|311232351|gb|ADP85205.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris RCH1] Length = 384 Score = 233 bits (595), Expect = 3e-59, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + D++E L A II K + L A DG L + A+ IE G A Sbjct: 1 MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V D++RKL G + + + I G + L F + Sbjct: 61 VTEPGLAGVQGRAFVDLLRKLPAGEIVLQL--DAEANVLRIEQGRRKYKLPVNDPVWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + L+ L++R F ++ E+ + +F E ++ A +GH+ Sbjct: 119 FSDFPADGAVVWSGDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEG-RIEACGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ AK+P+ ++V +K +GE+ + L + + +++++SE R+HL + Sbjct: 178 FAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEKRMHLRTGDGRET 235 Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ L ++P+Y N I L V+ A+DR+ I +S + LS Sbjct: 236 FSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSDNNRCTYFDLSGG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ +T D+G A ES+ Y+ I F + L++I+++ S + L + Sbjct: 296 EVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS-----GRLRLTLTGA 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G++ ++MPM+I Sbjct: 351 EGPCGISGEEDPE---------YQVIVMPMKI 373 >gi|239943012|ref|ZP_04694949.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|239989470|ref|ZP_04710134.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 11379] gi|291446484|ref|ZP_06585874.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] gi|291349431|gb|EFE76335.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL 15998] Length = 383 Score = 233 bits (595), Expect = 4e-59, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 152/394 (38%), Gaps = 25/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ----ANDGLLEIKASGPEIEITGA 56 M+ +ERS + E + A R++ ++ +PV +LL A DG L I E Sbjct: 1 MEFRIERSALTEAVSWAARVLPVRSPVPVLGGLLLDTGSGAGDGRLRISGLDYEASARID 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + A V G + V L DI + L DG + E G+ +S + F L P Sbjct: 61 VEAEVPRPGKVLVMGRRLLDICKVLPDGP-VECAVE---GSRFTVSGDGARFGLSVLPLD 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P+ V + + + V A ++ L GI ++ + + L AT Sbjct: 117 DYPALPPLPQV-RGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTL--AAT 173 Query: 177 DGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 D +R AV V A + ++V + + EI R L + V V+L + Sbjct: 174 DRYRFAVRTVPWKATAPGESADVLVSARRLTEIARSL-GRSGLVSVALDAGSAGFEHAGM 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SD 293 +VRL++G P ++ + + V+ L +AV RVS+++ R V+++ S Sbjct: 233 RTTVRLLEGRLPRHEKLFAMEDPAVAVVDRARLTEAVKRVSVVA-DRDSPVQMTFSRTDA 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + + A + + + + FN YL + + + + +L Sbjct: 292 SVTLRA-GYEDDVASQRLPAALEGAEELTVAFNPAYLADALAAFTGPS-----LRLQLLG 345 Query: 353 SNSSVFIRGKDKDSKNNKD--NKVNAFYVLMPMR 384 + I D ++LM +R Sbjct: 346 AGQRALITDGAGPGGTPTDGAGPGTHRHLLMSVR 379 >gi|254796561|ref|YP_003081397.1| DNA polymerase III, beta subunit [Neorickettsia risticii str. Illinois] gi|254589798|gb|ACT69160.1| DNA polymerase III, beta subunit [Neorickettsia risticii str. Illinois] Length = 372 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 105/387 (27%), Positives = 188/387 (48%), Gaps = 31/387 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---IPA 59 ITV++ + +LG+ + RK+TI HV ++ +E+ + E+ +T + I Sbjct: 9 ITVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +D +I+V A LY+IV++L + E + + + F L FP Sbjct: 69 VIDA--AISVDAFRLYEIVKRLPTDVGVVLSIEKDN---LVVRSKRIEFSLPYLDAKHFP 123 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 EEE + A +++L + FA + E R +LNG++F + E K+ ATD H Sbjct: 124 LISEEEKIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGE--KITVAATDVH 181 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237 RLAVA + + S I+P+K V E++++ SSK+ + + E SRI + S+ + Sbjct: 182 RLAVA--TLTKKTGLKFSCIIPKKTVSEMIKLSSSKEVELFLHGREYISRIKMVFGSVRL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI G FPN+ VIP S L + L +++RV ++S + +A+ + + +L + Sbjct: 240 NSKLIAGTFPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299 Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 N D E + + + + I FN+ YLL+I+ + + EV + +++ S Sbjct: 300 DASNSDASFGRELLELNEDTGEEISIYFNHVYLLDILSALD-----NKEVTMKFNNATSQ 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V +G + +A YV+MPM Sbjct: 355 VLFQGDE-----------SALYVVMPM 370 >gi|218442573|ref|YP_002380894.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424] gi|218175344|gb|ACK74075.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424] Length = 479 Score = 232 bits (592), Expect = 7e-59, Method: Composition-based stats. Identities = 78/393 (19%), Positives = 171/393 (43%), Gaps = 27/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ +SD+ L II + T P+ + +LQA +G L I A + + ++ A Sbjct: 1 MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118 V G+ITV A LL ++ L + + EN E + I +S + ++ E+ Sbjct: 61 VSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDEY 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + + + L+ + +E + L G+ H+ ++ KL TDG Sbjct: 121 PDIPSLDESETISIKMKTFIELLNPVLPTYSEDETKQVLVGV--HLVGKNNKLELATTDG 178 Query: 179 HRLAVAEVDIVAQIA-----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLN 231 HRL+V + + K + + K + + + + D + ++ +S ++ + N Sbjct: 179 HRLSVTGALLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWNKELVKFN 238 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + S ++ RL+ G +PNY +IP +L + + +AV R+ +++ + + + + Sbjct: 239 LTSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDK-NIIVIEAN 297 Query: 292 SD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + L +T + ++G+ E+++ + + + N KYL+E I + + + Sbjct: 298 KNLQTLTVTTFDTEVGQGSETIHAEFA-LNLKMGVNGKYLIEAIKALDAKS-----LTMN 351 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 +++ S + + ++MP Sbjct: 352 INTPTSPAVLVPSE-------CTLARCLVLIMP 377 >gi|120601057|ref|YP_965457.1| subunit beta [Desulfovibrio vulgaris DP4] gi|120561286|gb|ABM27030.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris DP4] Length = 384 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + D++E L A II K + L A DG L + A+ IE G A Sbjct: 1 MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V D++RKL G + + + I G + L F + Sbjct: 61 VTESGLAGVQGRAFVDLLRKLPAGEIVLQL--DAEANVLRIEQGRRKYKLPVNDPVWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + L+ L++R F ++ E+ + +F E ++ A +GH+ Sbjct: 119 FSDFPADGAVVWSGDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEG-RIEACGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ AK+P+ ++V +K +GE+ + L + + +++++SE R+HL + Sbjct: 178 FAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEKRMHLRTGDGRET 235 Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ L ++P+Y N I L V+ A+DR+ I +S + LS Sbjct: 236 FSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSDNNRCTYFDLSGG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ +T D+G A ES+ Y+ I F + L++I+++ S + L + Sbjct: 296 EVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS-----GRLRLTLTGA 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G++ ++MPM+I Sbjct: 351 EGPCGISGEEDPE---------YQVIVMPMKI 373 >gi|34541464|ref|NP_905943.1| DNA polymerase III subunit beta [Porphyromonas gingivalis W83] gi|34397781|gb|AAQ66842.1| DNA polymerase III, beta subunit [Porphyromonas gingivalis W83] Length = 377 Score = 232 bits (592), Expect = 8e-59, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 166/389 (42%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L R+I ++T+P+ VL + L + A+ ++ + + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60 Query: 61 --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 GS V +L + +++L D E+ S+G +F +Q Sbjct: 61 NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDVSTYPV 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++ E + S + L + + T FA + +E R + G++ E+ KL V +DG Sbjct: 121 AASLSPEAIVSIV-PAEALLSGLSATLFATSQDERRPIMTGVYLDFFED--KLVFVGSDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 L V + D Q + + +PRKA + +L + V ++ + +H+ + + ++ Sbjct: 178 QIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLR 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL++G +PNY +VIP SN ++V+ L RVSI S+ +++ + + ++ Sbjct: 237 ARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLS 296 Query: 299 VDNPDMG-KAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ D A E + M I F I+ + S +EV+ L + Sbjct: 297 ANDIDFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPS-----EEVIMTLADQTRA 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + N +L+PM++ Sbjct: 352 GLILPAENAPGISLCN------LLLPMKL 374 >gi|94984112|ref|YP_603476.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] gi|94554393|gb|ABF44307.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] Length = 360 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 87/364 (23%), Positives = 170/364 (46%), Gaps = 22/364 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + + E LG R+I +++ P+ + ++A++ L + + EI+++ +PA Sbjct: 1 MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V S + AHL IVR L G + G E+++ G S+F LQ+ +P Sbjct: 61 VQAPQSFVIPAHLFAQIVRNL-GGELVELEL---TGGELSVRAGGSDFKLQTGDLEAYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 L ++ L + +A + E + GI ++ VA+DG+R Sbjct: 117 L-SFPTHTDVSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARV--VASDGYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + ++IVP ++ E++R+L KD + + E + + + + M+++ Sbjct: 174 VAIRDFPA---SGDGRNLIVPARSADELIRVL--KDGEARFTYGEGLLSVTTDRVRMNLK 228 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299 L+DGEFP+Y+ VIP ++ + T L++AV RV++++ V+ +S KL + Sbjct: 229 LLDGEFPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEGKLRLAA 288 Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D G+A ++++V M + FN +++L+ + I D S S Sbjct: 289 EG-DYGRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGD------AELLFSGSTSPA 341 Query: 358 FIRG 361 R Sbjct: 342 IFRA 345 >gi|284030634|ref|YP_003380565.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836] gi|283809927|gb|ADB31766.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836] Length = 382 Score = 232 bits (591), Expect = 9e-59, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 154/390 (39%), Gaps = 26/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I E+ ++ E + R + + PV VLL A I + I + S Sbjct: 1 MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGTTIAGTDQAIANRAGLACS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 VD G+ +L +IV+ L G+ +N + ++ G + + L P EF Sbjct: 61 VDEPGTCLAPGRMLAEIVKLLPPGSLRLETVDNA----LVLTSGTATYALPLMPVEEFAP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +S E+ V + + +++ L+GI + ++L V+TD +R Sbjct: 117 LPALPDEHSAEVEPEEFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVEL--VSTDRYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV--------SLSESRIHLNI 232 L +A V + A + ++VP K + +++R S+ +++ + Sbjct: 175 LGIARVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDATFGL 234 Query: 233 ESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + S R++ G + Y+ +IP + +LR + LR+ V R++++++ + L Sbjct: 235 RNAVRSTCLRVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVAAGMT-PIWFDL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + D L + +P E++ P+ I F L + I + + ++ Sbjct: 294 TGDDLRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTS-----QLCVAF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVL 380 + V I G D D +VL Sbjct: 349 AGARKPVLITGATADGAPAGD----YRHVL 374 >gi|291520348|emb|CBK75569.1| DNA polymerase III, beta subunit [Butyrivibrio fibrisolvens 16/4] Length = 301 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 60/279 (21%), Positives = 137/279 (49%), Gaps = 7/279 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT +++D+++ + + + + T+ + +L+ A+ G +++ A+ EI I + + Sbjct: 1 MKITCQKADLVKGVNIVSKAVPTRTTMAILECILIDASAGEIKLTANDMEIGIETIVNGN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A +IVRKL D E + + +I+ + F + +F Sbjct: 61 ILERGIIALDAKKFSEIVRKLPDNEV---TIETDSTYKTSITCEKAKFDIIGKSGEDFSY 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + ++ L++++ +T F++A E + G I D KL VA DGHR Sbjct: 118 LPNIQRNQPIVISQLTLRDIIRQTIFSVADNENNKMMTGELIEIK--DNKLKVVALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239 +++ V++ + ++VP+K + EI++I+ D V + ++++ I + ++ Sbjct: 176 VSIRNVELKNPAEDV-KVVVPKKTLNEIIKIVDGGIDDEVNIFVTDNHIIFEFDQTTVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 R+I+GE+ + ++ + ++++N +DR +I+ Sbjct: 235 RIIEGEYFKIEQMLSADYETKIKINKREFFDCIDRATIL 273 >gi|293550168|ref|ZP_06672840.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M1015] gi|290919215|gb|EFD96291.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit [Staphylococcus aureus subsp. aureus M1015] Length = 290 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 71/308 (23%), Positives = 149/308 (48%), Gaps = 22/308 (7%) Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 +KL E + I+ G S F L ++P + + +L+ VLK Sbjct: 1 KKLPGKDVKLSTNE---QFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLK 57 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 N++ +T+FA++T E R L G+ + I E + L ATD HRLAV ++ + +++ ++ Sbjct: 58 NVIAQTNFAVSTSETRPVLTGVNWLIQENE--LICTATDSHRLAVRKLQLE-DVSENKNV 114 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 I+P KA+ E+ +I+S + + + + +++ + +++ RL++G +P+ + P + + Sbjct: 115 IIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYE 174 Query: 259 KELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYN 316 +L ++ A+DR S+++ +KLS D + ++ +P++G E ++ Sbjct: 175 IKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVE 234 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 + I FN KY+++ + I +DEV + ++ K DS Sbjct: 235 GGSLKISFNSKYMMDALKAID-----NDEVEVEFFGTMKPFILKPKGDDSVTQ------- 282 Query: 377 FYVLMPMR 384 +++P+R Sbjct: 283 --LILPIR 288 Score = 36.8 bits (84), Expect = 5.8, Method: Composition-based stats. Identities = 31/243 (12%), Positives = 72/243 (29%), Gaps = 10/243 (4%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-V 61 I + + ++ + T PV V + L A+ + V Sbjct: 49 IQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDV 108 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--YLQSFPESEFP 119 ++ + L ++ + + D + +V G+ NF L + Sbjct: 109 SENKNVIIPGKALAELNKIMSDNEEDIDIF--FASNQVLFKVGNVNFISRLLEGHYPDTT 166 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E Y + + + ++R N I ++ ++L + + + Sbjct: 167 RLFPENYEIKLSIDNGEFYHAIDRASLLAREGGN----NVIKLSTGDDVVELSSTSPE-I 221 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 EVD I K + + L+ + + + V+ + L + Sbjct: 222 GTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVT 281 Query: 240 RLI 242 +LI Sbjct: 282 QLI 284 >gi|291278434|ref|YP_003495269.1| DNA polymerase III subunit beta [Deferribacter desulfuricans SSM1] gi|290753136|dbj|BAI79513.1| DNA polymerase III, beta subunit [Deferribacter desulfuricans SSM1] Length = 369 Score = 232 bits (591), Expect = 1e-58, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 175/386 (45%), Gaps = 22/386 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++D+ EL+ HA KN V ++ ++A + IK++ + TG Sbjct: 1 MKFKCIKNDLQELVQHANNFTTTKNINTVLQNLFIEAEGNTITIKSTNLQTAFTGKFETE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G+ TV A L +I+++L DG I G+++ I G S F L + FP+ Sbjct: 61 IIESGTTTVPAKKLLEILKELPDGNIIDA---EFTGSKLVIKSGKSIFTLSTISPEYFPT 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E Y L S V K+++E+ +F ++ + + G + ++L A D + Sbjct: 118 VSEIVPEYFIRLKSDVFKSMLEKVNFCISNDHSKVEYTGGHIKVFGNKIELS--AADFQK 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+AE + + +I VP+K V E++++L + V++ + + I ++++ + Sbjct: 176 IAIAESKFDEEFSDEFTINVPKKTVNELIKLLDYSEY-VEIETDKKQALFKINNITIYTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+ + + + ++ + +V RVS ++S A S ++DKL + Sbjct: 235 LIEKYIQSLSKLFDIQPKITVSIHKESFLNSVKRVSTLTSDITHAAVFSFNTDKLDIYSL 294 Query: 301 NPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + G+ ES+ + Y P++I N K+++E++++I++ + ++ + V Sbjct: 295 ETEYGQGYESIEGITYEGEPIEIILNTKHVIEVMNHINT-----EYFTMKMIGRKNPVLF 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + Y+L P+ I Sbjct: 350 YPDED----------WYKYLLTPISI 365 >gi|78185893|ref|YP_373936.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273] gi|78165795|gb|ABB22893.1| DNA polymerase III, beta subunit [Chlorobium luteolum DSM 273] Length = 378 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 88/388 (22%), Positives = 178/388 (45%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+T + + + + I K+ ++ L G L + AS E+ IT Sbjct: 5 MKLTSSIRQLQDAVSKVAQAIPAKSIDQRFENINLSLEPGELTLFASDGEVSITAKSGVE 64 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118 G+I + A L D +R + D + + + E V+IS + + +S+ Sbjct: 65 SSDSGNIGIRARTLQDFLRSMYDTSVMFSIERQEISDHGTVSISTDKGRYRIPCLFQSK- 123 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P ++++Y S E+ +S + +L+++T FA + + +R + G+ F + E + AVATDG Sbjct: 124 PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPAMMGVLFEL--EGSIITAVATDG 181 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL +++ ++VP + + + ++ + +++ + S+ + Sbjct: 182 HRLVRCRKASSVDLSEKNKVVVPARVLSILQKLAQTDSVTMQFDSERKFVRFICGSIVLD 241 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY+ VIP +D+ L +N + + +V RV SS I VK+ L + + Sbjct: 242 AALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRVGRFSS--IGDVKVVLEGQMMKIM 299 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A E + ++ M I FN +++ + ++ ++E+ L S ++V Sbjct: 300 AENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALAHLD-----ENEIRIELKSPTTAV 354 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ N ++MP+RI Sbjct: 355 IFRPHGEE------ENDNLIILVMPVRI 376 >gi|260912252|ref|ZP_05918804.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral taxon 472 str. F0295] gi|260633686|gb|EEX51824.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral taxon 472 str. F0295] Length = 349 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 91/362 (25%), Positives = 169/362 (46%), Gaps = 19/362 (5%) Query: 27 IPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGA 85 +P+ + L + DG+L + S E + ++ D G TV + + D R+L D Sbjct: 1 MPILNNFLFEIVDGVLTLTTSDSETTMKASMQLDESDSNGRFTVPSRTILDATRELPDQP 60 Query: 86 QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YVYSFELASSVLKNLVERT 144 + ++ +G NF Q+ E+P KE S ++ S+VL N + R+ Sbjct: 61 LHFDINLETMAVQITYQNGVYNFTAQT--AEEYPRNKELAADAASIQMESAVLLNSIVRS 118 Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FA +E+R +NGI+F + E+ L VATDGH+L ++ + K S ++ +K Sbjct: 119 LFATGQDELRPIMNGIYFDLKEDG--LAIVATDGHKLVKSKNTAIRSDVKR-SFVLAKKP 175 Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 + IL+ + V+V + ++ + +S RLI+G +PNY++VIP N ++ ++ Sbjct: 176 ASLLRNILTKDSTMVEVKFDDRNAEVHFPNGMLSCRLIEGNYPNYESVIPQDNPNQITLD 235 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDIC 323 L + RV +S Q ++L + + ++ ++ D A ESM Y PM+I Sbjct: 236 RKGLVSVLRRVLPFASESSQLIRLHVEQGLVELSSEDIDFATSAKESMVCDYVGIPMNIG 295 Query: 324 FNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 F L E+++N+ SD+V+ +L + + + + ++MPM Sbjct: 296 FKGGALGEVLNNLDSDDVM-----VQLADPSKAALVLPA------VQPENEEILMLIMPM 344 Query: 384 RI 385 + Sbjct: 345 ML 346 >gi|222107075|ref|YP_002547866.1| DNA polymerase III beta subunit [Agrobacterium vitis S4] gi|221738254|gb|ACM39150.1| DNA polymerase III beta subunit [Agrobacterium vitis S4] Length = 378 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 100/382 (26%), Positives = 172/382 (45%), Gaps = 18/382 (4%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 V RS IL L ++ ++ IP+ +VLL N L + + +E+ + Sbjct: 7 FRVHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLES 66 Query: 63 VCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G+ +T+S L DIV+ + A+I F ++ G +V + G S F L + +FP+ Sbjct: 67 ASGNPLTLSGKALLDIVKSFSEVAEIEFSFDDLRG-QVRVKSGRSRFLLATLHADQFPTI 125 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 S + L + + R +A+ + R YL+GIF H E + K+ VA DGH L Sbjct: 126 ASLASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNL 185 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 AV A P I+P KA+ I R+ +S +V +S+ I + + ++ +L Sbjct: 186 AVVRFPCEAGTT-FPGAIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKL 244 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVD 300 ID +P+Y IP N + V+ +L AV RV ++ + +KL S+ L +++ Sbjct: 245 IDAVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMA 304 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D +A+E + YN + I FN YL + + +I + + V L + +S + Sbjct: 305 ATDGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTD-----VAINLLTESSPGLLT 359 Query: 361 GKDKDSKNNKDNKVNAFYVLMP 382 + YV+ P Sbjct: 360 PT---------VGTDELYVVYP 372 >gi|188995650|ref|YP_001929902.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis ATCC 33277] gi|188595330|dbj|BAG34305.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis ATCC 33277] Length = 377 Score = 231 bits (590), Expect = 1e-58, Method: Composition-based stats. Identities = 84/389 (21%), Positives = 167/389 (42%), Gaps = 19/389 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V + +L+ L R+I ++T+P+ VL + L + A+ ++ + + Sbjct: 1 MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60 Query: 61 --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 GS V +L + +++L D E+ S+G +F +Q Sbjct: 61 NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDASTYPV 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 ++ E + S + + L + + T FA + +E R + G++ E+ KL V +DG Sbjct: 121 AASLSPEAIVS-VIPAEALLSGLSATLFATSQDERRPIMTGVYLDFFED--KLVFVGSDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 L V + D Q + + +PRKA + +L + V ++ + +H+ + + ++ Sbjct: 178 QIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLR 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RL++G +PNY +VIP SN ++V+ L RVSI S+ +++ + + ++ Sbjct: 237 ARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLS 296 Query: 299 VDNPDMG-KAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ D A E + M I F I+ + S +EV+ L + Sbjct: 297 ANDIDFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPS-----EEVIMTLADQTRA 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + + N +L+PM++ Sbjct: 352 GLILPAENAPGISLCN------LLLPMKL 374 >gi|258511078|ref|YP_003184512.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257477804|gb|ACV58123.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 369 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 90/368 (24%), Positives = 166/368 (45%), Gaps = 15/368 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+S + L R+ +++ V VL++A+ G + A ++ + + AS Sbjct: 1 MRCLIEQSVLEPTLSAMARVAPVRSSAAVLQGVLVEADRGQVTFSAYDYDVALRMTMEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + + A L ++VR+L G I+ + L +++ + L F EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDVDATHAE--LHGFDPEEFP 118 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + EL++ L VE +A A + R L G+ H+ +D +L AT+ Sbjct: 119 ELPDMRGIAPVELSAKTLVAAVESVGYAAAKRDPTRPILEGV--HVACDDGRLVWTATNA 176 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 RL + + ++ VPR+ + E+LR+L ++ ++V+V S S + + + + Sbjct: 177 LRLVQVKQAVDGELP--IRFTVPRRGLSELLRLLEDEEETTVQVYQSASYVMFAWDHVQL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL G +P+ VIP E RV L QAV+R +I++ +V L LS+ LCM Sbjct: 235 YTRLYQGGYPDVTRVIPTEFIAECRVERDRLEQAVERTTILAENEHHSVTLELSNGALCM 294 Query: 298 TVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + D G+A E + + + + + N +++LE++ + V R Sbjct: 295 SSRARDRGQAREEVPILESSGEEVRVALNARFVLEMLRAMEGQV-----VRIRFAGRGRP 349 Query: 357 VFIRGKDK 364 V D Sbjct: 350 VCFHDDDD 357 >gi|111658628|ref|ZP_01409278.1| hypothetical protein SpneT_02000218 [Streptococcus pneumoniae TIGR4] Length = 341 Score = 231 bits (589), Expect = 2e-58, Method: Composition-based stats. Identities = 76/356 (21%), Positives = 160/356 (44%), Gaps = 27/356 (7%) Query: 38 NDGLLEIKASGPEIEITGAIPASVDVCG-------SITVSAHLLYDIVRKLQDGAQISFF 90 + + + S +I I I + G SI + A ++V L D ++ Sbjct: 2 TNEGITLIGSNGQISIENFISQKNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLD 58 Query: 91 KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 + ++ ++ G S L+ ++P +E L + +LK ++ T FA +T Sbjct: 59 FKEIEQNQIVLTSGKSEITLKGKDSEQYPRIQEISASTPLILETKLLKKIINETAFAAST 118 Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210 +E R L G+ F +++ +L VATD HRL+ ++ + +++P +++ E Sbjct: 119 QESRPILTGVHFVLSQHK-ELKTVATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSA 176 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 + + +V++ + ++I E++S RL++G +P+ +IP + + N NLRQ Sbjct: 177 VFTDDIETVEIFFANNQILFRSENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQ 236 Query: 271 AVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKY 328 +++R ++SS + VKL + + V +P++GK E ++ + I FN Y Sbjct: 237 SMERARLLSSATQNGTVKLEIKDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTY 296 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L++ + ++S++ V S+ + D D + ++ P+R Sbjct: 297 LIDSLKALNSEK-----VTISFISAVRPFTLVPADTDE--------DFMQLITPVR 339 >gi|198274538|ref|ZP_03207070.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135] gi|198272592|gb|EDY96861.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135] Length = 372 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 90/388 (23%), Positives = 182/388 (46%), Gaps = 21/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+I V ++ +L+ L RII+ KNT+P + L ++ G +++ A I+ + Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D V S SA L D ++++ + E E + + + + F + ++ Sbjct: 61 KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEKE----MIVKYANGKFTMPIEDGKQY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P ++ +SF L+ + L V + F A +E+R +NG++F I+ E K V TDG Sbjct: 117 PEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSYVGTDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+ E+ + I+P K + ++ ++V ++ + + + +S + Sbjct: 175 SRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I+G +PNY+ VIP + K + + +L A+ RVS+ ++ V L L +T Sbjct: 235 CRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLIT 294 Query: 299 VDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D K+ E + + ++I F +L+E++++I S +++ + + + Sbjct: 295 AHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPS-----EDISISMTDPSRAA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D++ + + Y+LMPM I Sbjct: 350 VLSRCDEE-------ERSLTYLLMPMSI 370 >gi|189499002|ref|YP_001958472.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1] gi|189494443|gb|ACE02991.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1] Length = 374 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 93/388 (23%), Positives = 184/388 (47%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T E + A + I K P ++ L ++ +L + A+ EI IT Sbjct: 1 MKFTTSIKHFQEAVNKAIQAIPNKVLDPRFENLHLNIDNRILTLFATDGEISITATTDVD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESEF 118 G + + A + D +R + D + ++ + VNI+ + + ES+ Sbjct: 61 SSDKGDLGMRARTILDFLRSMYDTEVNFEIERQQMSEQGIVNIATDKGRYTIPCSFESKA 120 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 +E+ + F+L + L N++++T FA + + +R + G+ F I + L A+ATDG Sbjct: 121 EK-QEKTFDIEFDLTAGDLLNIIQKTTFACSIDGMRPAMMGVLFEIEQNL--LSAIATDG 177 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL +++ I++P + + + +++S + + + + I + ESL + Sbjct: 178 HRLVRFRKTCEVSLSEKQRIVIPARVLSILQKLVSEGNIRISIDSANRSIRFSTESLVLD 237 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI ++PNY+ VIP NDK+L + + +V RV S+ I ++ S+S + +T Sbjct: 238 AALIVEQYPNYEAVIPLENDKKLSIERASFYDSVKRVGRFSN--IGDIRFSISPSTMKLT 295 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A E + Y+ P++I FN K++ + +I DD ++ L + ++V Sbjct: 296 AENINEGESAQEDLACSYDNEPIEIGFNSKFIEAALAHID-----DDSLIVELSTPTTAV 350 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + N ++MP+RI Sbjct: 351 ILKPE------KEKENENMMILVMPVRI 372 >gi|242281239|ref|YP_002993368.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM 2638] gi|242124133|gb|ACS81829.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM 2638] Length = 387 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 87/394 (22%), Positives = 168/394 (42%), Gaps = 27/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R +++E L + II K + L+++ G L I ++ +E G PA Sbjct: 1 MYLKVNRDEVIEGLQKSASIIPAKTGAAYLRTIWLKSDGGNLRIMSTDSNLEFCGTYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G V YD+VRKL G K + G+ + + G + L + F Sbjct: 61 IMEEGLAGVQGRAFYDLVRKLPSGE--LTIKNDADGSSILVEQGSRKYKLPVNDPTWFQK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 + + L L+ER F ++ E+ + + +E + +G Sbjct: 119 FSSFPSEGAVFWSGDFLLELIERIAFCISDEDSMEAIACMNIVPAADENGKFVEVCGLNG 178 Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235 H+ A + D + I I++ +K + E+ + L+ + +++SLSE R+ Sbjct: 179 HQFARLKFINDDIHSILPEEGILIQKKYLVELKKWLTEDE--IELSLSEKRLFFKTADGK 236 Query: 236 -SMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + S+ L ++PNY+N + ND ++V + L A+DR+SI ++ + + Sbjct: 237 ETFSLPLSYYQYPNYKNFLSKLNDDDVSRMKVEKSELSMALDRISIFNTDSNRCASFLFN 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L + ++G A ESM + ++ I F K L+EI+ + SD+ + F L Sbjct: 297 PGELVLFSQGQEVGTATESMEIEFSGEMERIAFPTKNLIEILGHFQSDK-----INFTLT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G D + ++MPM++ Sbjct: 352 GAEAPCGVTGGDDNE---------YLVIVMPMKV 376 >gi|317486107|ref|ZP_07944954.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] gi|316922630|gb|EFV43869.1| DNA polymerase III [Bilophila wadsworthia 3_1_6] Length = 382 Score = 230 bits (587), Expect = 3e-58, Method: Composition-based stats. Identities = 87/392 (22%), Positives = 169/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M TV++ +I+E L A II + + ++A +L I A+ IE TG PA Sbjct: 1 MLFTVKKENIIEGLQKAAGIIPTRAGAAYLRSLWIKAEGEVLTIMATDANIEFTGTYPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V+ D+VR+L G + ++ V + G + L + + F S Sbjct: 61 VKEPGLVGVNGRNFVDLVRRLPAGE--LRIRLDDATGTVILEQGRRTYKLPANDPTWFQS 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + +++R F ++ +E + ++F E + +GH+ Sbjct: 119 LAPFSSEGAVVWSGDFFQEIIDRVFFCVSDDESSDAIACLYFKPVGEG-HIEVCGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ A++P +++ RK VGE+ + L + ++V+L++ R+ + + Sbjct: 178 FALTRFTHDDLSARLPEDGVLIQRKYVGELRKWLGGDE--IEVNLTDKRLFVRSGDGHET 235 Query: 237 MSVRLIDGEFPNYQNV---IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S+ +P+Y + + L+++ + A+DR+SI ++ + LSS Sbjct: 236 LSLPRAGYAYPDYSPFMTRLASPDVSLLKLSRKDCLDALDRISIFNTESDRCTYFELSSA 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ D G A ES+ V YN I F K L+EI+ + S E+ F L + Sbjct: 296 EAMLSAQGQDTGSANESLEVSYNGSIGRIAFPTKNLMEILTHYQS-----GELTFTLTGA 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G + + ++MPM+I Sbjct: 351 EGPCGINGTEDP---------DYTVLIMPMKI 373 >gi|119355859|ref|YP_910503.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM 266] gi|119353208|gb|ABL64079.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM 266] Length = 376 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 91/388 (23%), Positives = 176/388 (45%), Gaps = 19/388 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T + + + + I K P ++ L G L + AS E+ IT S Sbjct: 3 MKFTAPIRLLQDAVNRVSQAIPSKAIDPRFENIHLAIEPGKLTLFASDGEMSITAKSEIS 62 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118 + G+I++ A L D +R + D + E V+IS + + F ES+ Sbjct: 63 SEDTGNISIKARTLQDFLRSMYDTEVTFSIERQEISDHGTVSISTDKGKYKIPCFFESKM 122 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 E+ YV + +L S L+ L+++T FA + + +R + G+ F + E + AV+TDG Sbjct: 123 -EIYEKNYVINLDLPSVELQYLIQKTIFACSVDGMRPAMMGVLFEL--ESSSITAVSTDG 179 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRL V ++ I+V + + + ++ + +++ + + ++ + Sbjct: 180 HRLVRCRKSTVIEVEDKQKIVVSARVLSILQKLPLHETVIIQIDQDKRFVRFTQNNVVID 239 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 LI +PNY+ VIP +DK++ + +N+ +V RV SSV +K+ L+ + + Sbjct: 240 ASLIVEPYPNYEAVIPVIHDKQVSCDRSNIYDSVKRVGRFSSV--GDIKMVLADSIIKVM 297 Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 +N + G+ A E + Y + I FN K++ + +I + E++ L S ++V Sbjct: 298 AENTNEGESAQEELPCSYTGEDITIGFNAKFIEAALAHID-----EKEIIIELKSPTTAV 352 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + ++MP+RI Sbjct: 353 IFKPVQEKETG------SLIILVMPVRI 374 >gi|332702339|ref|ZP_08422427.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str. Walvis Bay] gi|332552488|gb|EGJ49532.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str. Walvis Bay] Length = 387 Score = 230 bits (586), Expect = 4e-58, Method: Composition-based stats. Identities = 90/394 (22%), Positives = 165/394 (41%), Gaps = 27/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R DI+E L + II K + L+A DG L+I A+ +E G+ A Sbjct: 1 MFVRVFRDDIIEGLQKSASIIPAKTGAAFLRTIWLKAEDGALKIMATDSNLEFCGSYKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G V YD++RKL G E I G + L S F Sbjct: 61 IVQEGLAGVQGRAFYDLMRKLPSGQITIRTDEATKN--AIIEQGSRKYKLPVNDPSWFQK 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178 + + L+ L++R F ++ E+ + + E + + +G Sbjct: 119 FSDYPESGGVFWSGDFLQELIDRVAFCISDEDTMEAIACMNMVGKDVEGEKVVEVCGLNG 178 Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235 H+ A+ D +A + I+V +K V E+ + L++ + +++++S+ R+ Sbjct: 179 HQFAMVRFVNDDIAGLLPENGILVQKKYVSELKKWLTADE--IELAISDKRLFCRTGDRR 236 Query: 236 -SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + S+ L ++P+YQ + + L T + +++DR+ I +S + V + Sbjct: 237 ETFSLPLSYYQYPDYQGFLAKVQGNGASSLSFARTEMIESLDRIMIFNSETNRCVNFVFN 296 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +L + D+G+A ES+ V ++ I F + L+EI+ + SS D V F L Sbjct: 297 GQELTLFSQGQDVGQASESIQVDFSGELEKIAFPTRNLIEILGHYSS-----DRVSFTLT 351 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S IR + + ++MPM+I Sbjct: 352 GSEGPCGIRSEQD---------KDYLVIIMPMKI 376 >gi|258406589|ref|YP_003199331.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM 5692] gi|257798816|gb|ACV69753.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM 5692] Length = 393 Score = 229 bits (585), Expect = 5e-58, Method: Composition-based stats. Identities = 76/397 (19%), Positives = 153/397 (38%), Gaps = 30/397 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + +L A II K + L+A D L I ++ ++E +G+ PA Sbjct: 1 MLVRISKEQVLSGFQKAAGIIPMKTGAAFLRTIWLEAKDNHLTIMSTDSKLEFSGSYPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G I V YD+ RKL G ++E V + G + L + S F Sbjct: 61 VETPGLIGVPGKKFYDLFRKLPPGEITLHAADSED--HVLLEQGRRKYKLPTNDASWFQP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + LK ++ R + +A +E +N + + A +GH+ Sbjct: 119 FSAFPEDEAVLWSGDFLKEIINRITYCVADDESMNGMNCLKITPWPNSEAVEACGLNGHQ 178 Query: 181 LAVAEVDIV--------AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A+ + I++ + + E+ + LSS + + ++ + R+ Sbjct: 179 FALMRFLNPDIHAILPQDDEGEDSGILIAKNYLLELKKWLSSDE--IYFTIDQKRLFFTN 236 Query: 233 E--SLSMSVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + S+ L +FP Y+ + + +L + + A++RV++ ++ + Sbjct: 237 GKKNEIFSLPLSTYKFPKYETFLSNFQNETSKLNIGRDEILDALERVALFNTENQRCSYF 296 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S ++ + + G+A ES+ V Y+ I F L+E++ + S + + F Sbjct: 297 VFDSTEMIVYSQGQETGEATESLGVEYSGDLKKIAFPTTTLIEVLSHFQS-----EMITF 351 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I GK+ V+MPM + Sbjct: 352 EFTGVEGPCKITGKED---------SGYLVVVMPMHV 379 >gi|75761787|ref|ZP_00741722.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490720|gb|EAO54001.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 273 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 16/275 (5%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS--------VDVCGSITV 69 + + + TIP+ + + A + + + S +I I IP + GSI + Sbjct: 1 MKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEIAQSGSIVL 60 Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 A +IV+KL + EN T+ I G S F L +E+P + E + Sbjct: 61 QAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNGLDSAEYPLLPQIEEHHV 117 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F++ + +LK+++ +T FA++T E R L G+ + + +L +ATD HRLA+ + I Sbjct: 118 FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT--CIATDSHRLALRKAKIE 175 Query: 190 AQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 ++++P K++ E+ +IL + V + ++E ++ + L RL++G + Sbjct: 176 GHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNY 235 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 P+ +IP + ++ VN QA+DR S+++ Sbjct: 236 PDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARE 270 Score = 36.8 bits (84), Expect = 6.8, Method: Composition-based stats. Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 7/147 (4%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITGA 56 + + ++ + T P+ V + + L A+ + +I G Sbjct: 118 FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATDSHRLALRKAKIEGH 177 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 A + ++ + L ++ + L + ++ E H L Sbjct: 178 NIAD-EFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNYP 236 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVER 143 + E + + ++R Sbjct: 237 DTTRLIPAESKTDIFVNTKEFLQAIDR 263 >gi|158520111|ref|YP_001527981.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3] gi|158508937|gb|ABW65904.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3] Length = 377 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 87/393 (22%), Positives = 187/393 (47%), Gaps = 24/393 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++VE+ DI+E+L + I +++++ ++ ++L++ + + A+ E G PA+ Sbjct: 1 MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYPAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN--FYLQSFPESEF 118 ++ G+I ++A Y+IV+K+ D I +E + +++ + S + + F Sbjct: 61 IENEGTIAINARQFYEIVKKI-DSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119 Query: 119 PSTKEEEYVYSFELASSVLKNLVE-RTHFAMATEEIRYYLNGIFFHINEED--LKLCAVA 175 P V ++ S+ KN++ T + E R ++ G ++ K+ V+ Sbjct: 120 PQLPVIADVSYIDVNSADFKNMILWATVITSSGTEKRAHVIGANLEYIKDGKIKKIRMVS 179 Query: 176 TDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 TDG RL E P S I+P+KA+ E+ + L + ++++ ++ + Sbjct: 180 TDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKD-EGTIQIGTRDNYFIVKNN 238 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + + L+ GE+PN + + E+++N L+ ++R+SI+++ + V + Sbjct: 239 NEIIYINLLSGEYPNLETLFSDEKGRTEIKINRKKLKDMLERMSILTTDNYKGVIFTFEK 298 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + L + NPD G++ E M++ Y++ + FN Y ++ ++ I DDEV +L Sbjct: 299 NILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFIDAVNLIE-----DDEVCLKLKE 353 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G N ++MPM+I Sbjct: 354 DQAPCIVCGGKHPENIN---------IIMPMKI 377 >gi|332982992|ref|YP_004464433.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON] gi|332700670|gb|AEE97611.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON] Length = 374 Score = 229 bits (584), Expect = 6e-58, Method: Composition-based stats. Identities = 85/392 (21%), Positives = 170/392 (43%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +E+ ++ ++ A + + ++ +PV V L A +L A+ I + A Sbjct: 1 MYVEIEKDNLETVVATAGKALATRSVLPVLEGVKLSATGNMLTADATNTVTHIAVSKAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+I + LL DIV L +G + V I+ G S L + P +FPS Sbjct: 61 VTETGAIVTNGKLLIDIVSSLPEGPVTIKT---DNQGNVVITAGLSEITLATLPAKDFPS 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATDGH 179 E F + + VLK++++ T A ++ L G+ + + L A DG+ Sbjct: 118 PPAVETGAEFSIPADVLKSMIKGTSLFAAPDQSAQEILTGVAMELEGTN--LVMTAIDGY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLSM 237 R+A + + I+P K++ + +IL + VK+SL I N + Sbjct: 176 RIAQRCSVVTNTAGYNGTAIIPAKSLATLAKILPVGNGDVKISLGNKVIRFNTADGGIIF 235 Query: 238 SVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSD 293 + L++G++ +Y+ +I + + ++R AV R V++ + +KL ++++ Sbjct: 236 TAVLLNGKYIDYKGLIDEALEDRKSRMTLFTEDMRSAVGRDVTVAQAGNSTLLKLEVTNN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + + D+ K + + V + N KYL +++ I DD++V SS Sbjct: 296 YLLLN-TSVDIAKVSDRIAVDCEGEDAKVGLNGKYLSDVLSVIG-----DDQIVLSFGSS 349 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + ++ ++ Y ++P+R+ Sbjct: 350 ADPILVQPVEEQE---------YLYYILPIRL 372 >gi|317155006|ref|YP_004123054.1| DNA polymerase III subunit beta [Desulfovibrio aespoeensis Aspo-2] gi|316945257|gb|ADU64308.1| DNA polymerase III, beta subunit [Desulfovibrio aespoeensis Aspo-2] Length = 389 Score = 229 bits (584), Expect = 7e-58, Method: Composition-based stats. Identities = 76/394 (19%), Positives = 163/394 (41%), Gaps = 25/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R +I+E L + II K + LQ +G L I ++ +E G+ PAS Sbjct: 1 MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V YD+V++L++ + +E V + + F Sbjct: 61 IEEDGLAGVQGRAFYDLVKQLRNDQGELTLRTDEAKQNVLVEQKAKKYKFPVNDPEWFQK 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178 + + L ++++ F ++ E+ + I+F E ++ +G Sbjct: 121 FSSFPENGTVFWSGDFLHEIIDKIAFCISDEDSMEAIACIYFVPRESMGVKRVEVCGLNG 180 Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235 H+ A+ D + + +++ +K +GE+ + L+S + +++++S R+ Sbjct: 181 HQFAMFNFVNDDIYAMLPEEGVLIQKKYIGELKKWLTSDE--IELAISHKRLFFRTGDQR 238 Query: 236 -SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + ++ L ++PNY N + N L V L A+ RV++ ++ + + Sbjct: 239 ETFTLPLSYYQYPNYNNFLAKLGDDNVSTLEVKRLELVDALSRVALFNTDSNRCAYFTFG 298 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 ++ ++ + G A ES++ + I F + L+EI+++ +S V F L Sbjct: 299 EGEVTISAQGQETGTARESIDATFAGDMKRIAFPTRNLIEILNHFNS-----PTVKFTLT 353 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G D + ++MPM I Sbjct: 354 GTEAPCGLTGVDD---------RDYNVIVMPMMI 378 >gi|91203533|emb|CAJ71186.1| similar to DNA polymerase III beta subunit [Candidatus Kuenenia stuttgartiensis] Length = 366 Score = 228 bits (583), Expect = 8e-58, Method: Composition-based stats. Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + ++ + V L+ D E+ A+ E+ + IPA Sbjct: 1 MKILFSGDALHKGFSLTASVVPSSAMKQILQGVKLEVADNCAELTATDLEVLVKYRIPAK 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G I + A +I R+ +IS E + +F + +FP Sbjct: 61 ACEGEGGIVLPASRANNIFREWAGNEEISVTVE---AGHCTLQSKGGSFKILGDDCLQFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + E+ +L +VE+ +A+++ + +GI I + + V +D + Sbjct: 118 NITKTDVTSFVEIDGEILGKMVEKVAYAVSSIKALSIYSGISVKIFGD--TIIMVGSDMN 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + S IV K + + R +S ++ V + ES+IH E + Sbjct: 176 RLAVVKRKVRNPENVSMSGIVGVKCLAFLQRFVSECKGTLMVGMGESQIHFIGEKGEVIS 235 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++PNY VIP +NDK++ VN L V S +++ + V+ SL+ +KL + Sbjct: 236 QLIEGKYPNYDEVIPKNNDKKIEVNRDELLSIVRMASFVTNDEYRVVEFSLTKNKLSIFS 295 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 ++G+A + Y+ FN Y+L+ + + + L + + Sbjct: 296 SAANVGEAALEIAAQYDGPDYTNTFNPDYILDFLRASDC-----ETITIELGEIDDAALF 350 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 + ++ V+MP+ Sbjct: 351 KTGHEEIN-----------VMMPV 363 >gi|313678902|ref|YP_004056641.1| DNA polymerase III subunit beta [Oceanithermus profundus DSM 14977] gi|313151617|gb|ADR35468.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM 14977] Length = 361 Score = 228 bits (583), Expect = 9e-58, Method: Composition-based stats. Identities = 88/386 (22%), Positives = 168/386 (43%), Gaps = 26/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + + E LG RII + + P H+ + +G L ++ S E+++ +PA Sbjct: 1 MQVRLPKRTFAEALGMLERIIPGRASNPALTHLRFEVAEGGLRLQGSNGELDLELVVPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ V L+ +VR L +E ++ I G L + +EFP Sbjct: 61 VEGEAVRLVPGQLIGQVVRNLPGELVELGLEEG----QLTIESGSFATRLTTADPAEFPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E L + L + R +A + E+ R G+ ++ +L +VA+DG R Sbjct: 117 LA-FEAETVARLPARELGRALARVRYAASGEDYRAIFRGVQLELHPT--RLRSVASDGFR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ ++++ + +VP ++V EI+R+L + V + L + L E M+ Sbjct: 174 LALYDLELALDAER--KFVVPARSVDEIVRVLERTEGEVALGLLGGHLTLAAEGFRMAAA 231 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L++GEFP+Y+ VIP E ++ T L+ ++ RV +++ V L +L + + Sbjct: 232 LMEGEFPDYERVIPPEFALEAEIDATALKDSLKRVKVLADRNNHRVDLVFEDGRLEVVAE 291 Query: 301 NPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 D G+ +E + V M + +N +YL + I+ + R + S I Sbjct: 292 G-DYGRGVERLEVDARGEAQMVLAYNAEYLEGALGPIAG------KARLRFSGAASPSVI 344 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + V++P+R+ Sbjct: 345 QDAED---------GGYLAVVVPLRV 361 >gi|319642216|ref|ZP_07996875.1| DNA polymerase III [Bacteroides sp. 3_1_40A] gi|317386072|gb|EFV66992.1| DNA polymerase III [Bacteroides sp. 3_1_40A] Length = 372 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 89/388 (22%), Positives = 181/388 (46%), Gaps = 21/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 M+I V ++ +L+ L RII+ KN +P + L ++ G +++ A I+ + Sbjct: 1 MEILVSKTALLDKLKSVGRIIQPKNILPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60 Query: 60 SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 D V S SA L D ++++ + E E + + + + F + ++ Sbjct: 61 KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEKE----MVVKYANGKFTMPIEDGKQY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P ++ +SF L+ + L V + F A +E+R +NG++F I+ E K V TDG Sbjct: 117 PEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSYVGTDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA+ E+ + I+P K + ++ ++V ++ + + + +S + Sbjct: 175 SRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLV 234 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R+I+G +PNY+ VIP + K + + +L A+ RVS+ ++ V L L +T Sbjct: 235 CRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLIT 294 Query: 299 VDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D K+ E + + ++I F +L+E++++I S +++ + + + Sbjct: 295 AHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPS-----EDISISMTDPSRAA 349 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D++ + + Y+LMPM I Sbjct: 350 VLSRCDEE-------ERSLTYLLMPMSI 370 >gi|256370586|ref|YP_003108411.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri SMDSEM] gi|256009378|gb|ACU52738.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri SMDSEM] Length = 371 Score = 228 bits (582), Expect = 1e-57, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 181/385 (47%), Gaps = 18/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK +++L L +I N +P+ + L + + +L I S EI +T ++ Sbjct: 1 MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLNI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + +L +I++K+ + E ++ I + + L F E+P Sbjct: 61 NSINFGSAVIPHKILLEILKKIPEQPLTFC---KEKENKLKILSQNGEYDLSIFSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 F ++ +L N++ T FA+ +EIR LNG+FF I E+ V+T+ + Sbjct: 118 KYSLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDI--ENNISNFVSTNSN 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + K +I+P+K + + L+ +++V +S ++ + + Sbjct: 176 FLVKYSIK-DLSFNKEIRLIIPKKPLNILKYNLNDTNNNVYISYNDLNTSFFFKKKKIIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G +PNY++++ +K L +N A+ RV++ S+ + L+ S + ++ Sbjct: 235 SLINGNYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISS 294 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + KA E + Y+ P++I FN KYL+EI+ NI+ +++ F + ++NSS Sbjct: 295 FDINYNKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINC-----EDIKFEMLNNNSSCR 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I K+SK + ++MP+ Sbjct: 350 ITPLMKNSKKEE-----ILILIMPL 369 >gi|283778831|ref|YP_003369586.1| DNA polymerase III subunit beta [Pirellula staleyi DSM 6068] gi|283437284|gb|ADB15726.1| DNA polymerase III, beta subunit [Pirellula staleyi DSM 6068] Length = 372 Score = 228 bits (581), Expect = 1e-57, Method: Composition-based stats. Identities = 77/388 (19%), Positives = 162/388 (41%), Gaps = 25/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI +R ++ A ++ + +V L + + A+ ++ + + Sbjct: 1 MKIVCQRDKLVSAFQTAAMFAPARSPKAILQNVRLDVTNEGCTMMATDMDMGVRVNLEGV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G+ + I+R+ D K + S F LQS EFP Sbjct: 61 EVESTGTALLPVLHFGAILRESSDAT----LKIETTSRGTMVRGDRSEFRLQSEDPEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E +++++LK ++ RT FA E RY L G+ ++ + KL AV TDG Sbjct: 117 IVALFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVLIELHGD--KLIAVGTDGR 174 Query: 180 RLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 RLA E A + I+ ++ R +S D++V+++ S + L E + Sbjct: 175 RLAKMEGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISENDNTVQLAARSSDVLLKTERAT 234 Query: 237 MSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 RL++G FP +++V P D ++ + + + ++++S + + + + L Sbjct: 235 FYSRLVEGRFPRWRDVFPRRQDAIKIDLTVGPFFSVLRQAAVVTSQDSRGIDFTFADGTL 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ D G++ M + Y + + +++++ + + +S ++ +V ++S+ S Sbjct: 295 TLSAVTSDAGQSRVEMPISYTGSAITVTLDHRFVADFLKVLSPEQ----TIVLEIESAES 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + D YV+MP+ Sbjct: 351 AAVFTADDS----------AYGYVVMPL 368 >gi|288916501|ref|ZP_06410878.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] gi|288352101|gb|EFC86301.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f] Length = 414 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 93/420 (22%), Positives = 172/420 (40%), Gaps = 59/420 (14%) Query: 1 MKITVERSDILELLGHACRIIERKNT---------------IPVSCHVLLQANDGL---- 41 M+ +VER + + G R + K T +P H A+D Sbjct: 14 MRFSVERDVLADATGWVARHLP-KPTGGAQQVLTGLLLEALLP--DH----ASDHNSDHT 66 Query: 42 -----------LEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF 90 LEI A E+ + A V G + V LL D+VR L D + + Sbjct: 67 AERSRGRGAPALEISAFDGEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVLVWA 126 Query: 91 KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 T V I G ++F + + ++P E+ + V + A Sbjct: 127 T----ATRVTIECGTASFRIPTLDSEDYPVLPVF-PPPVGEVDTLGFAAAVAQVAPAAGR 181 Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEIL 209 ++ L + I L L VATD +RLA+ + + ++ VP + + +I Sbjct: 182 DDSLPVLTAVRLEIARGGLSL--VATDRYRLALRTIPWQPTVDDPEAVAHVPARLLADIA 239 Query: 210 RILSSKDS-SVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 R+ +S ++ + + +S R L++ VRL++G FPNY+ ++P ++ + Sbjct: 240 RLPTSASRIALGMGVDDSGVARFGLSVNGRQTIVRLLEGTFPNYRRLLPEASAFTVTAQT 299 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 + L AV RV++++ R ++ + S+ ++ + +A E + + Y + + FN Sbjct: 300 SVLAAAVRRVALVA-TRTAPLRFTFSAGQVLAEAGDGGGAQACELVPLEYTGPELSVLFN 358 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +LL+ + + DEVV + +S+S + GKD + Y+LMP+R Sbjct: 359 PAFLLDGLAAVEGDEVVFGFAAVDPNTTSSSPAVLTGKDD--------GEDYRYLLMPIR 410 >gi|332186935|ref|ZP_08388676.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] gi|332012945|gb|EGI55009.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17] Length = 374 Score = 227 bits (580), Expect = 2e-57, Method: Composition-based stats. Identities = 95/392 (24%), Positives = 177/392 (45%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ VER ++ + ++E + TIPV ++L++ G L + + +++++ +PA Sbjct: 1 MKVEVERDALMGAVRAVIDVVEARTTIPVLSNMLVEVEGGSLTLTGTDLDLQVSATVPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ TV A L V L G + V + G L + ++FP Sbjct: 61 GEM--KTTVDARKLQAAVDSLFKGKVTIAPIDGRAA--VTLKAGRGQRILPTLSANDFPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E SF + S+ L +++ AM++EE RYYL GI+ H E +L ATDGHR Sbjct: 117 RGPIEDARSFTMPSADLSRILDTASVAMSSEETRYYLCGIYIHPYEG--RLRGAATDGHR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L EVD+ A + +I+PRKAVG + ++L+ D V+V ++ + + I + + + Sbjct: 175 LVRVEVDLPAGAEMIKGVILPRKAVGHLRKLLAKHDGPVEVEVTTAAMAFQIGGVRVLTK 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-----RIQAVKL--SLSSD 293 LID FP+Y VIP + + V V+ ++S +++AV + +++ Sbjct: 235 LIDDTFPDYNRVIPEHVGRGFIGRPGVVDDTVSAVTAVTSPEGEKFKVRAVAMATAVAPG 294 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A+E ++V P+ N Y + ++ + + + Sbjct: 295 ESEARAKDQSGTSAVEVLDVETIGEPIHFGVNRDY----LKSVVGLFRENGALTLDIRDP 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G+ D + V+MPMR+ Sbjct: 351 ACPIKLTGEHDD---------DLVAVVMPMRV 373 >gi|307564548|ref|ZP_07627088.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A] gi|307346706|gb|EFN92003.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A] Length = 374 Score = 227 bits (579), Expect = 2e-57, Method: Composition-based stats. Identities = 90/368 (24%), Positives = 163/368 (44%), Gaps = 19/368 (5%) Query: 19 RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDI 77 ++I KN I + L + + L I AS E I I D S V+ + D Sbjct: 19 KVIANKNAIAILDCFLFEIKNNQLTITASDSENTIHCIIELDSADGEASFAVNNQTIIDA 78 Query: 78 VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YVYSFELASSV 136 V++L + NE + +G NF + F E+P + + + S++ Sbjct: 79 VKELPEQPLSLDVNMNEQKIYITYQNGSYNFPI--FSAEEYPRVQTVSSDATTIVIDSNI 136 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 L + + R+ FA A +E+R +NG++F + + L + VATDG +L V + K Sbjct: 137 LVDAITRSLFATAQDELRPVMNGLYFDLLSDSLSI--VATDGQKL-VRNKIFTIKSDKES 193 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 + I+P+K + +LS V + + ++ ++S RLI+G FPNY +VIP + Sbjct: 194 AFILPKKPANLLKNVLSKDGGDVIIRYDQRSAEISYAEGNLSCRLIEGRFPNYNSVIPVA 253 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYY 315 N ++ ++ +L A+ RV +S ++ + L + ++ D A ES+ Y Sbjct: 254 NPNQIVIDRRSLIGAIRRVLPFASEASPLIRFRIEQGVLTLNAEDIDFSTSAKESVVCNY 313 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 M I F +L+I++N+ D+V L + + + N + V+ Sbjct: 314 AGNAMSIGFKGTSMLDILNNLDG-----DDVTIELADPSRAGIVLP------NKQLENVD 362 Query: 376 AFYVLMPM 383 ++MPM Sbjct: 363 VLMLIMPM 370 >gi|29829904|ref|NP_824538.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680] gi|29607013|dbj|BAC71073.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis MA-4680] Length = 376 Score = 227 bits (579), Expect = 3e-57, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 153/392 (39%), Gaps = 27/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ VER E +G A R + ++ +PV +LL A+ G L + E A Sbjct: 1 MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSVSGFDFEAAARIGTDAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V L DI R L DG +S E GT + G + F L + P E+P+ Sbjct: 61 TVAEGQVLVLGRRLLDICRVLPDGP-VSCVLE---GTRFTVEAGGTRFGLSTLPREEYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + V + A ++ L G+ ++ + + L A+D +R Sbjct: 117 LP-VPPEPYGSVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTL--AASDRYR 173 Query: 181 LAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESL 235 AV + + A + ++P + + +I R L+ V++ I + Sbjct: 174 YAVRTLGWQPEAAADGVVEALLPARRLLDIARSLARS-GDVRIGFDRAAGGLIGFEGGRM 232 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SD 293 VRL++G P Y ++ + V C L +AV RV++++ V+L S Sbjct: 233 RTVVRLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVA-EANSPVRLDFSAPDG 291 Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D A + + + + FN YLL+ +++ + V L Sbjct: 292 TVLLGAGYGDD-VAAQRLPAVLSGAEEVTAAFNPGYLLDALNSFEA-----PRVRLELLG 345 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + + ++ ++LM +R Sbjct: 346 AGQRTLLTAVADGGEPDTAHR----HLLMSVR 373 >gi|88608357|ref|YP_506066.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str. Miyayama] gi|88600526|gb|ABD45994.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str. Miyayama] Length = 372 Score = 226 bits (577), Expect = 4e-57, Method: Composition-based stats. Identities = 103/387 (26%), Positives = 186/387 (48%), Gaps = 31/387 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---IPA 59 +TV++ + +L + + RK+TI HV ++ +E+ + E+ +T + I Sbjct: 9 VTVQQDALTRILANLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +D I+V A LY+IV++L + E + + F L FP Sbjct: 69 VIDAV--ISVDAFRLYEIVKRLPTDVGVVLSIE---KNNLVVRSRRIEFSLPYLDAKHFP 123 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 EEE + A +++L + FA +TE R +LNG++F + E K+ ATD H Sbjct: 124 LISEEEKIGQINFAVDEIRSLFNKVRFATSTESTRQHLNGVYFESDGE--KITVAATDVH 181 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237 RLAVA ++ + S I+P+K V E++++ S K+ + + E SRI + + + Sbjct: 182 RLAVA--TLMKKTGLKFSCIIPKKTVLEMIKLSSGKEVELFLHGREYVSRIKMVFGGVRL 239 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + +LI G FPN+ VIP S L + L +++RV ++S + +A+ + + +L + Sbjct: 240 NSKLIAGTFPNFAAVIPHSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299 Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 N D ES+ + + + I FN+ YLL+I+ + + EV + +++ S Sbjct: 300 DASNSDASFGRESLELNEDIGEEISIYFNHIYLLDILLALD-----NKEVTMKFNNATSQ 354 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V +G + +A YV+MPM Sbjct: 355 VLFQGDE-----------SALYVVMPM 370 >gi|298372804|ref|ZP_06982794.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str. F0058] gi|298275708|gb|EFI17259.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str. F0058] Length = 377 Score = 226 bits (576), Expect = 5e-57, Method: Composition-based stats. Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 17/376 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +++ R+++ L ++I K IP++ + L + + +L I A+ E ++ AI Sbjct: 1 MNLSISRNELYNKLAIVQKVINSKTPIPIAENFLFKIENNVLTIVATDLETTLSTAINLE 60 Query: 61 VDVCGSITVS-AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL----QSFPE 115 + GSI + + +I+++L + E ++ G Sbjct: 61 -NCPGSIIFAMPPKIMEILKELPEQILSISIDEETFKIDLQNESGSYKSDFLGIGVGQNG 119 Query: 116 SEFPSTKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +FP KE + Y S ++ S +L N + RT FA A E+ R + G+ F + + ++ V Sbjct: 120 EDFPRPKELDTEYKSLKITSELLLNGISRTVFATAEEDSRPTMTGVLFDMFDNNITF--V 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD H+L + I S I+P+K + IL D +++S + I + Sbjct: 178 ATDAHKLVKYNMS-NINIGFENSFILPKKPALTLKNILVRTDELIEISFDDKNISFRMPE 236 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 M R I+G++PNY VI N + V+ +L A+ RV + SS + ++S +K Sbjct: 237 YEMICRRIEGKYPNYNAVI-QKNPFKAIVDRQSLLSAIKRVKVFSSQGTGLIIFNISENK 295 Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ + D A E + Y++ PM+I F L EI+ N+ D+++V L + Sbjct: 296 IEVSTQDIDFSTSAKEIIVCQYSDQPMEIGFKAALLEEILSNMQ-----DNQIVIELADA 350 Query: 354 NSSVFIRGKDKDSKNN 369 + + I + D + Sbjct: 351 SKAGIIVPFENDPDQD 366 >gi|282856281|ref|ZP_06265562.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455] gi|282585858|gb|EFB91145.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455] Length = 385 Score = 225 bits (575), Expect = 6e-57, Method: Composition-based stats. Identities = 88/393 (22%), Positives = 182/393 (46%), Gaps = 28/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+ + +++ ++ A R+ K+T+ VL A++ + + ++ + I A Sbjct: 1 MKLEITQNEFMKYWSMAERVTGTKSTMATLASVLCVADETGVMLNSTDLKTTIRVKAEGA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V G + ++ ++ +K+ + + +NE GT IS G S++ + +FP Sbjct: 61 TVLEPGKAILPLKVVGELFKKIV-ASPFTVEVDNEKGT---ISAGRSHYSFTTCNVGDFP 116 Query: 120 STKEEEYVYSFE--LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 F A + + L E E+ YL+G I +L++ VATD Sbjct: 117 DLPSPRAAEEFTRVSAGELSRVLAEGGIAGAPNEDFPKYLSGGLMQIAGGELRV--VATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE 233 G RL++++ I A + +++P K++ E RIL+ D V+V + + N+ Sbjct: 175 GRRLSLSKTMIENADAASSAREMLLPLKSLEEYQRILTGFAPDQEVEVLQDGAVTYFNMP 234 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + SVR ID +FPNY+ ++ ++ +++ + + QA+DR++I+ + V L+LS Sbjct: 235 GVQYSVRCIDSKFPNYERILSNTSTTQMQADRSGFMQALDRINIVVGDNSRVVILTLSPG 294 Query: 294 -KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++ P++G+A ES++ + P+ + FN YL+ I + V + Sbjct: 295 AAMELSGRAPEIGEANESVDASISGEPLKVAFNVGYLMAGIKAFHGSD-----VTLAFNG 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + I + + Y+LMP+++ Sbjct: 350 AEGQMMIT---------RPGGTDFVYMLMPIKL 373 >gi|168702516|ref|ZP_02734793.1| DNA polymerase III, beta chain [Gemmata obscuriglobus UQM 2246] Length = 375 Score = 225 bits (575), Expect = 7e-57, Method: Composition-based stats. Identities = 83/394 (21%), Positives = 170/394 (43%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MK+T +R +L + ++ T PV ++ A D + + A E+ I + Sbjct: 1 MKVTCQRDSLLTACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYELRGI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V GS + + ++V+ L++ + + V + G F + S +EFP Sbjct: 61 TVARAGSCILP---ITELVKILRESSDPEISLDAGKEAVVAKTSG-GKFEMPSLDVNEFP 116 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKLCAVAT 176 E + + E+ + VL+ ++ RT FA ++ R+ L G+ + + ++ +L VAT Sbjct: 117 DIPEFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARL--VAT 174 Query: 177 DGHRLAVAEVDIV--AQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 D RLAV + + V + + +I +VP KAV + + L+ +V+V L + E Sbjct: 175 DTKRLAVCKGEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDALFKTE 234 Query: 234 SLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ L+ G+FP Y+++I +++ + V + +IM+ V ++ Sbjct: 235 RATIYTSLVQGKFPPYRDIIGKTTKEATQKVPLPVQGFLSRVRQAAIMTDDESMRVDMTF 294 Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + M G + ++ + Y+ +I F+ YL+E + I ++ VV Sbjct: 295 DPGSVVMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENE----PTVVLE 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + + D N Y++MP+ Sbjct: 351 MSTGTRAALFTCGD-----------NYSYLVMPL 373 >gi|323699690|ref|ZP_08111602.1| DNA polymerase III, beta subunit [Desulfovibrio sp. ND132] gi|323459622|gb|EGB15487.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans ND132] Length = 389 Score = 225 bits (575), Expect = 8e-57, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 163/394 (41%), Gaps = 25/394 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R +I+E L + II K + LQ +G L I ++ +E G+ PA+ Sbjct: 1 MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V YD+V++L+ +E V + + F Sbjct: 61 LEGEGLAGVQGRAFYDLVKQLRSDQGELTIHTDEANQNVLVEQKARKYKFPVNDPEWFQK 120 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178 + + L ++++ F ++ E+ + I+ ++ + + +G Sbjct: 121 FSTFPEDNTVYWSGDFLHEIIDKISFCISDEDSMEAIACIYMVPRDKAGNKTVEVCGLNG 180 Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235 H+ A+ D + + +++ +K + E+ + L++ + +++++S R+ Sbjct: 181 HQFAMLNFVNDDIYAMLPEEGVLIQKKYLAELKKWLTADE--IELAISNKRLFFRTGDKR 238 Query: 236 -SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + ++ L ++PNY N + N L VN +L A+ RV++ ++ + S Sbjct: 239 ETFTLPLSYYQYPNYNNFLARLNDDNVSTLEVNRLDLVDALSRVALFNTDSNRCAYFSFD 298 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +++ ++ + G A ES++ + I F + L+EI+++ +S V F L Sbjct: 299 DNEVTVSAQGQETGTARESIDATFTGDMTRIAFPTRNLIEILNHFAS-----PTVKFTLT 353 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + G D + ++MPM I Sbjct: 354 GTEAPCGLTGPDD---------KDYNVIVMPMMI 378 >gi|218134377|ref|ZP_03463181.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC 43243] gi|217989762|gb|EEC55773.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC 43243] Length = 284 Score = 224 bits (571), Expect = 2e-56, Method: Composition-based stats. Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 7/285 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +S++ + + + I + ++P+ +++ + +G ++ A+ E+ I + Sbjct: 1 MKLVFSKSELSKGVNIVSKAIPTRTSMPILECIMIDSTEGQIKFTANDMELGIETIVEGD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + A + DIVRKL D +N I+ +S F + +F Sbjct: 61 ILEKGKIAIDAKIFSDIVRKLPDNDITIQTDDN---YNALITCENSKFNISGKSGDDFSF 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S L+ L+ LV +T F A + + G F + + +LK+ VA DGHR Sbjct: 118 LPVIEKQKSIRLSQFALRELVNQTIFCTAPNDNNKMMAGELFEVIDSELKV--VALDGHR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239 +A+ + + A ++VP K + EI +ILS D + + S + I + + Sbjct: 176 IAIRKKKLEG-RADDVKVVVPGKTLNEISKILSTDADDMMNIYFSNNHILFEFDQTIVVS 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 RLI+GE+ ++ + + N + ++DR +++ + Sbjct: 235 RLIEGEYFKISQMLSSDYETRITANKKEMLGSIDRATLLIKESDK 279 >gi|303246809|ref|ZP_07333086.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ] gi|302491826|gb|EFL51706.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ] Length = 396 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 78/403 (19%), Positives = 167/403 (41%), Gaps = 37/403 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V R+DI++ L + II K + L+A +L I ++ +E TG A Sbjct: 1 MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAAGDVLRILSTDSSLEFTGQYAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V +++VRKL G +I + E G + I G + L + F + Sbjct: 61 VTEEGLCGVQGKSFFELVRKLPPG-EIGLTLDAESGN-LLIKQGSRRYKLPVSDRNWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L+ L++R + ++ E+ + +F +E K+ +GH+ Sbjct: 119 FSPFPEEGAVTWSGDFLQELIDRVAYCISDEDTMEAMACMFLKPADE-AKVEVCGLNGHQ 177 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--- 235 ++ D + + I++ +K V E+ R L++ + +++++S+ R+ + Sbjct: 178 FSLVGFLNDDIHTMLPAEGILIQKKYVAELKRWLTADE--IELAISQKRLFFRTQEKDPE 235 Query: 236 ---------SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRI 283 + S+ L ++P+Y + L +N L A++RV+I ++ Sbjct: 236 NEAATPKIETFSLPLSYYQYPDYNTFVSKLATDGVSTLAINRDELMDALERVAIFNTDNN 295 Query: 284 QAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++L + + G+A E++ + + F K LL+I+ + S + Sbjct: 296 RCAYFLFDGPNELSLRSQGQEAGEATETLECAFTGSLDKVAFPTKDLLDILGHFHSPK-- 353 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + + I G++ + ++MPM+I Sbjct: 354 ---VTLAMTGAEGPCGITGEED---------GDGLVIIMPMKI 384 >gi|260892589|ref|YP_003238686.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] gi|260864730|gb|ACX51836.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4] Length = 386 Score = 223 bits (570), Expect = 3e-56, Method: Composition-based stats. Identities = 79/398 (19%), Positives = 157/398 (39%), Gaps = 35/398 (8%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQA---NDGL--LEIKASGPEIEITGA 56 ++ V++ ++ ++L R + K +P VL++ +G + + A+ + +I + Sbjct: 9 RVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVAS 68 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + A ++ G + + A +D+VR+L + + +V +S+ L Sbjct: 69 LQAHLEGEGELWLPAKETFDLVRRLPE---CTLELGQAGPEQVLVSYPGGEARLTGMNPE 125 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 EFP+ E+E Y+ L L N + R +A A + + G+ + L AT Sbjct: 126 EFPAVNEQEDGYT-ALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSGG-LTFAAT 183 Query: 177 DGHRLAV---AEVDIVAQIAKMPSIIVPRKAVGE---ILRILSSKDSSVKVSLSESRIHL 230 DGHRLAV E D S +VP + E + ++L +V L Sbjct: 184 DGHRLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLL--GKEPDRVLLGRHTASF 241 Query: 231 NI-ESLSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + RLID +FP+++ +P + L L ++R ++ V L Sbjct: 242 VWPGEAEFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVVL 301 Query: 289 SLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + ++ + + + G+ E ++ + + FN YLLE + + S EV Sbjct: 302 LVKEGEEVRLEARS-EAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVLDSAA----EVR 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L S + + +++P+R+ Sbjct: 357 VGLYGPASPATVTVPGDE---------RYLALVLPVRL 385 >gi|212659782|gb|ACJ36975.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 266 Score = 223 bits (568), Expect = 4e-56, Method: Composition-based stats. Identities = 85/268 (31%), Positives = 151/268 (56%), Gaps = 7/268 (2%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 64 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM--PS 197 L+ERT FAMA +++RYYLNG+ + KL A+DGH L + ++ AK Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLVDFPKT--KLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQA 285 D+E++V LR A+ R +I+S+ + + Sbjct: 239 DREVKVAREVLRDALQRAAILSNEKYRV 266 >gi|220903290|ref|YP_002478602.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] gi|219867589|gb|ACL47924.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. ATCC 27774] Length = 384 Score = 223 bits (568), Expect = 5e-56, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 163/392 (41%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + I+E L A II K + L+A DG L + ++ IE TG A Sbjct: 1 MKLTVNKEQIIEGLLKAVAIIPAKAGAQYLRSIWLKAEDGGLSVMSTDANIEFTGRYQAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I V D+VR+L G + +E + + G + L F + Sbjct: 61 VAQPGLIGVQGRAFVDLVRQLPSG--VLHLSLDEASGNLLVEQGRRTYKLPVSGAEWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L++L+++ F ++ ++ + + ++ +GH+ Sbjct: 119 FSSFPEENTVTWSGDFLQDLLDKVAFCISDDDAMDAIACLCMMPKGNG-RIDVCGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ ++P I++ +K + +I + L + +++S++ R++L S + Sbjct: 178 FALVSFTHDELAERLPEEGILIQKKYLQDIKKWLGVDE--IELSITGKRLYLRSMSKAET 235 Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S+ ++P+Y + + + ++ +A+ R+ I ++ + + LSS Sbjct: 236 LSLPRATHQYPDYSIFMSKLASEDMHPMTLDRKEAMEALGRILIFNTESDRCTYMDLSSG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ D+G A ES+ V Y I F + L++++ + S + L + Sbjct: 296 EALLSAQGQDVGSASESLEVTYGGDIKRIAFPTRNLMDVLAHFVSGKTD-----MMLTGA 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG D + ++MPM++ Sbjct: 351 EGPCGIRGADDP---------DYTVIIMPMKV 373 >gi|78355049|ref|YP_386498.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] gi|78217454|gb|ABB36803.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans subsp. desulfuricans str. G20] Length = 384 Score = 222 bits (567), Expect = 5e-56, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 166/392 (42%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + D+++ L A II K + L+A G++ + ++ IE G+ A Sbjct: 1 MYLKVFKEDVIDGLQKAANIIPAKTGAAYLRSIWLKAEAGMVHVLSTDSNIEFRGSYKAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V D++RKL G + + I G + L + + F + Sbjct: 61 VTEEGLAGVQGRAFVDLIRKLPAGEITLHL--DPKTGTLGIEQGRRKYTLPTNDTAWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + L+ L+++ F ++ E+ + + +++ + A +GH+ Sbjct: 119 FSDYPESGSVFWSGDFLQELIDKLSFCISDEDTMEAIACMSMKPRQDNA-IEACGLNGHQ 177 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ D + + I+V +K + E+ + L + + +++++ R+ + Sbjct: 178 FAMQRFLNDDIHALLPAEGILVQKKYLMELKKWLGADE--IELNIDNKRLFFRTGDKRET 235 Query: 237 MSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ L ++P+Y + + + L VN ++ A+DRV I ++ + L + Sbjct: 236 FSLPLSYYQYPDYTSFVSKLSTPDAGALEVNRKDMMAALDRVLIFNTDNNRCTYFDLEAG 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ ++ ++G A ES+ Y+ I F + L+EI+++ S D + F L + Sbjct: 296 EVSLSSQGQEVGSASESLEGTYDGSLKRIAFPTRNLIEIMNHYQS-----DSMRFTLTGT 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + G+ N + ++MPM+I Sbjct: 351 EGPCGLTGE---------NDPDYLVIVMPMKI 373 >gi|212659786|gb|ACJ36977.1| DNA polymerase III subunit beta [Xylella fastidiosa] Length = 264 Score = 222 bits (565), Expect = 1e-55, Method: Composition-based stats. Identities = 85/266 (31%), Positives = 150/266 (56%), Gaps = 7/266 (2%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79 ++ER+ T + ++L++ N+ L + + E+E+ G IT+ A +Y+IVR Sbjct: 4 VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 L D +Q+S ++ ++ ++ + G S F L + P ++FPS + E +A +LK Sbjct: 64 ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM--PS 197 L+ERT FAMA +++RYYLNG+ + KL A+DGH L + ++ AK Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLVDFPKT--KLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRI 283 D+E++V LR A+ R +I+S+ + Sbjct: 239 DREVKVAREVLRDALQRAAILSNEKY 264 >gi|289523932|ref|ZP_06440786.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] gi|289502588|gb|EFD23752.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans ATCC BAA-1850] Length = 384 Score = 220 bits (561), Expect = 3e-55, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 164/389 (42%), Gaps = 27/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M+I + ++ R T + + ++A + + + A+ + I I Sbjct: 1 MRIKINDQKLIRSWQITERTSRGPKTSAILSGIYVKAYNNNVILMATDLKTSIKCLIHDV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G + +I++KL G I T+V I H + F ++P EFP Sbjct: 61 TIEEEGESIFPTKGVGEILKKLSHGFTIEAT-----NTKVTIRHEKNQFNFTTYPTEEFP 115 Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATD 177 E + + S L + F +T E YL+ LKL +ATD Sbjct: 116 KLPSSESAKLACRIKSKDLSRSIREGSFTGSTNEEFPQYLSSALIEFKRNSLKL--IATD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235 G RL+++E D++ + SI++P + + E+ RILS +DS +++ +S+ + + + Sbjct: 174 GKRLSLSEADLMEGSTEEDSILIPIRGINELERILSTLDEDSLIEILYDDSQCYFRGDDI 233 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DK 294 +S+R ++ FP Y +I + ++ L A+++V ++ + + + L Sbjct: 234 ELSIRRVESLFPPYDRIISSDRTTWMTIDRQALIDALEKVEVIVRDFNKVIIMDLKPAGN 293 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L ++ ++G+ M + P+ + FN YLL+ + I D V + + Sbjct: 294 LSISAFAKNVGEGFVEMAAEVDGEPLKVGFNVAYLLQGLKAIG-----DSSVRMSFNGPH 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + ++ D N Y+LMP+ Sbjct: 349 GQMRLQKISSD---------NFLYILMPV 368 >gi|110003909|emb|CAK98249.1| putative dna polymerase III, beta chain protein [Spiroplasma citri] Length = 372 Score = 220 bits (560), Expect = 4e-55, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 171/389 (43%), Gaps = 24/389 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M + ++R IL+ L RII +K IP +L++ + S + I I Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ GS+ + + +++RK++D E G + I + + L + ++ Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVE---GNLIKIKANNFDSVLNTLNSAD 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P E S+VLK ++ +T FA+ +E R NG+ ++ + +L ATD Sbjct: 118 YPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ ++D +I+P K + EI R++S D +K+ +++ + + I + + Sbjct: 178 SFRLSCKKIDYSNNY--NFDVIIPGKFINEIGRLISENDQEIKMKITDKSVSVIINNTIV 235 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLC 296 ++I+G++P+ VI S + L +N L + ++R S++S+ V L + K+ Sbjct: 236 QTKIIEGKYPDTSKVIATSFNTSLTINNRELIKIIERASVLSNETMTTIVTLKIKEQKVL 295 Query: 297 MTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T ++G E + I FN KY+L+ + + E+ ++ Sbjct: 296 VTSFTQEIGNTEEEIREFKVEGTDQIIAFNSKYILDALKAFKTK-----EITIKMIDETK 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I D + +++P+R Sbjct: 351 PLIITANDDQTLQQ---------LVLPIR 370 >gi|239904641|ref|YP_002951379.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1] gi|239794504|dbj|BAH73493.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1] Length = 397 Score = 219 bits (559), Expect = 5e-55, Method: Composition-based stats. Identities = 77/403 (19%), Positives = 163/403 (40%), Gaps = 36/403 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++TV R+DI++ L + II K V L+A L I ++ +E TG A Sbjct: 1 MQLTVFRNDIIDGLQKSSSIIPAKTGAAFLRTVWLEAAGSSLSILSTDSSLEFTGHYAAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V +++VRKL G +IS + G + I G + L + F Sbjct: 61 VAKEGLCGVQGKSFFELVRKLPPG-EISLTLDEASGN-LLIKQGSRRYKLPVSDRNWFQP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L+ ++ER + ++ E+ + ++ + ++ +GH+ Sbjct: 119 FAAFPNEGAVTWSGDFLQEIIERVAYCISDEDTMEAMACMYLRPVADSARIEVCGLNGHQ 178 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--- 235 ++ D + + I++ +K V E+ R L++++ V++++ + R+ Sbjct: 179 FSLVGFLNDDIHAMLPPDGILIQKKYVAELKRWLTAEE--VELAMGQKRLFFRTTKRDEA 236 Query: 236 ---------SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRI 283 + S+ L ++P+Y + L ++ A++RV+I ++ Sbjct: 237 APEGQGSVETFSLPLSFYQYPDYNAFVSKLATDGVSTLAIDRLECIDALERVAIFNTDNN 296 Query: 284 QAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + +L + + G+A E++ + + F K L +I+ + S + Sbjct: 297 RCASFLFDGPGELSLKSQGQEAGEATETLECVFTGDLDKVAFPTKDLTDILGHFESAK-- 354 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V L + IRG+D ++ ++MPM+I Sbjct: 355 ---VSLTLTGAEGPCGIRGEDD---------TDSLVIIMPMKI 385 >gi|307719923|ref|YP_003891063.1| DNA polymerase III subunit beta [Sulfurimonas autotrophica DSM 16294] gi|306978016|gb|ADN08051.1| DNA polymerase III, beta subunit [Sulfurimonas autotrophica DSM 16294] Length = 355 Score = 219 bits (558), Expect = 6e-55, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 MKITV +S + +L HA +E+K+T ++ HV + ++ L +KA+ EI + Sbjct: 1 MKITVSKSILENILIHASPFLEKKDTSQITSHVYMNVSNSELTLKATDYEIGFLVSTDNL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GSIT + DIVR L+D K + + IS G SNF L +F +EFP Sbjct: 61 KIEKEGSITANGKKFLDIVRILKDDEINLEVKNDN----LLISQGHSNFKLPTFSYNEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + S L +++ A+ T ++ LNG I + + ATD Sbjct: 117 EFPAYEGKPRISIESHTLIESLKKITPAIDTNNPKFELNGALIDIQKNSINF--AATDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV V I Q SII+P+KA+ EI ++ ++++ E+ + ++ + + Sbjct: 175 RLAV--VTIDNQSDNELSIIIPKKAIVEIQKLFFD---NIELYYDETNLIIHSQQYTFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP Y +IP L + + ++ +++ +S+ +K++ +D + Sbjct: 230 KLINGKFPEYSRIIPKETKYNLVLPKAIMIDSIKQITTISTD----LKITFMNDIISFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A ++ P I N KYLL+ +++I+S E L+ N Sbjct: 286 LSDDNIEAKTEISYNTGFSKPFSIAINSKYLLDFLNSINSS-----EFTIGLNEGNLPFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ N V+MP+ Sbjct: 341 LK------------DQNFITVVMPI 353 >gi|255994572|ref|ZP_05427707.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989] gi|255993285|gb|EEU03374.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989] Length = 363 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 91/366 (24%), Positives = 184/366 (50%), Gaps = 15/366 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ T + DI E L + I + T+P+ +L++A + + IK + EI I + Sbjct: 1 MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLKIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D G I V+A L Y+I+RKL +G F E++ +++I + +S F L+ E +FP Sbjct: 61 NDEVGKIIVNAKLFYEIIRKLPEGNIEFFTDESK---KLHIKNLNSEFELEYLEEEKFPF 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 KE + F +L N+++++ ++ E + L G++ IN+ + L V +DG+R Sbjct: 118 AKEVKGEK-FSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISL--VGSDGYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +A+ + +I+ + K I+VP + + I +IL + +V++ + E I ++ + ++ Sbjct: 175 IAITKENIINEQEK--DILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLK 232 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299 L++G + +Y+ E+ +N +L AV+R+ ++S + + L L ++ L + Sbjct: 233 LLEGTYIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIE- 291 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D+G A E + + + N K+LL+ I NI +E+ ++ + + I Sbjct: 292 TSSDIGYAKEEIILDKMGEDNEFAINCKFLLDAIKNIDG-----EELKLKIGKNERFILI 346 Query: 360 RGKDKD 365 + D Sbjct: 347 EEVEND 352 >gi|34556460|ref|NP_906275.1| DNA polymerase III subunit beta [Wolinella succinogenes DSM 1740] gi|34482174|emb|CAE09175.1| DNA POLYMERASE III, BETA CHAIN [Wolinella succinogenes] Length = 355 Score = 219 bits (558), Expect = 7e-55, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 170/385 (44%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M I + +S + +L + +E+K+ ++ HV +A L +A+ EI + Sbjct: 1 MNIVIPKSSLENILTNLQPFLEKKDASQITSHVYFKAQGSELTFQATDYEIGLLAKTESV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G TV+ + DIVR+L++G +E ++I S+F L F EFP Sbjct: 61 QIQKEGIATVNGKKILDIVRRLKEGEITLQSQEE----YLHIKQEKSSFKLPMFNAEEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E + E+ S L +++ A+ ++ LNG I E VATD Sbjct: 117 SFPSYEELPKIEINSMHLVQSMKKILPAIDNNNPKFELNGALLDIKE--YSFNFVATDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + ++IVP+KA+ EI ++ V++ SE+ + L ++ Sbjct: 175 RLAV--IKYENPSINKLALIVPKKAIVEIQKLFF---EEVELHYSETHLILKSKNYLFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI G++P+Y+ +IP + + + +A+ ++ +S+ +K++ + +++ Sbjct: 230 KLISGKYPDYERIIPKETTHNMTLPKEKIIEAIKLINSLSND----IKVTFTKEEILFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +A + V + + N KYLL+ + I + E ++ SN+ Sbjct: 286 LSEENSEAKTQVEVETGITKELTLGINSKYLLDYLGQIDTS-----EFKIGINESNTPFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + N V+MP+ Sbjct: 341 LKSE------------NFSTVIMPI 353 >gi|267847165|gb|ACY80723.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 104/418 (24%), Positives = 189/418 (45%), Gaps = 52/418 (12%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57 I ++ + L I+E+KN + +V L + LEI A+ +I I + Sbjct: 19 NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78 Query: 58 PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 P + SIT+ L +IV+K+ + N+ V I G+ F L + P Sbjct: 79 PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKIVQIKGGEYLEFNLATLPI 136 Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + FP +E + L ++E T FA++TEE RY LNGI+ H +++ L AV Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195 Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLA A+ +I +I+PRK + E+ +I +V + + + Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + V Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325 L L + ++ KA E + Y + + FN Sbjct: 316 ILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAFN 375 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 KYLL+++ ++ ++ S S I+ ++K +A +++MP+ Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420 >gi|267847161|gb|ACY80721.1| chromosomal replication initiation protein [Orientia tsutsugamushi] gi|267847163|gb|ACY80722.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 218 bits (556), Expect = 1e-54, Method: Composition-based stats. Identities = 104/418 (24%), Positives = 189/418 (45%), Gaps = 52/418 (12%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57 I ++ + L I+E+KN + +V L + LEI A+ +I I + Sbjct: 19 NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78 Query: 58 PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 P + SIT+ L +IV+K+ + N+ V I G+ F L + P Sbjct: 79 PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKGGEYLEFNLATLPI 136 Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + FP +E + L ++E T FA++TEE RY LNGI+ H +++ L AV Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195 Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLA A+ +I +I+PRK + E+ +I +V + + + Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + V Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325 L L + ++ KA E + Y + + FN Sbjct: 316 ILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAFN 375 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 KYLL+++ ++ ++ S S I+ ++K +A +++MP+ Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420 >gi|28492969|ref|NP_787130.1| DNA polymerase III subunit beta [Tropheryma whipplei str. Twist] gi|28572177|ref|NP_788957.1| DNA polymerase III subunit beta [Tropheryma whipplei TW08/27] gi|28410308|emb|CAD66694.1| DNA polymerase III, beta chain [Tropheryma whipplei TW08/27] gi|28476009|gb|AAO44099.1| DNA polymerase III beta chain [Tropheryma whipplei str. Twist] Length = 377 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 160/386 (41%), Gaps = 18/386 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ V+R + + R+I + P+ +L++A + + + E A+ Sbjct: 1 MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYETSAKVEFSAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + V L+ I +KL D + KE+E +++++ G N+ L P +E+P Sbjct: 61 VIEGGKVLVPGTLISSISQKLPD-EPVEISKEDE---KISLTCGPVNYILNLMPIAEYPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + S V + + A ++I + GI ++ E ++L TD +R Sbjct: 117 LPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDISAVITGINLRLSNESIEL--TGTDRYR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESR-IHLNIESLS 236 +AV ++ V+ S+IV K + E+ + L + +S + V + E++ I + + Sbjct: 175 VAVKTLNSVSGHPSDSSVIVSSKTLFEVSKTLGNLESEISVFIKNDGENKVIGFESGNKT 234 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++ LI G +P + + ++ ++ RVS++ R + ++ S + + Sbjct: 235 VTSLLISGNYPPVAKLFTEETGHYAILKTSDFLESTKRVSVVV-ERDEPIEFSFVKNTVT 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + A E + + I ++L + + D + + + Sbjct: 294 IKGSG--IALASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPGP 351 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMP 382 V I K + K++ Y+L P Sbjct: 352 VLITPK-----LSNKEKIDFKYLLQP 372 >gi|269791621|ref|YP_003316525.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans DSM 6589] gi|269099256|gb|ACZ18243.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans DSM 6589] Length = 379 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 173/389 (44%), Gaps = 29/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+ +E+ + A R ++ S V+++++ G +E+ A+ + + + Sbjct: 1 MKLNIEKGPFIRAWNMAERCAGASSSG-ASSSVMIRSSAGRVELFATDMKTSLRCPVQGV 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D+ G + +L D+ +K D + +E + G S + ++ SEFP Sbjct: 60 QSDLDGEALLPVKVLGDLFKKCPDPSFTINLEEG----RGTMVSGRSRYRFSTYDVSEFP 115 Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATD 177 F + + L+N + A +T + YL+ ++ + L V+TD Sbjct: 116 KFPSSASAAQFGTVKAQDLRNAISEGGIAASTSDEYPQYLSCVYLQ--GDQGALRIVSTD 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL 235 RLA ++ + ++ S+++P +A+ E+ R+LS +D V++ L +++ + + Sbjct: 174 SRRLAYSKCPMEGSSSE--SMLLPMRAIRELDRMLSGLQEDGDVRILLDQAQAYFISDDF 231 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DK 294 ++R +DG+FP Y+ +IP S + V+ + + A++R+ ++ + V ++LS Sbjct: 232 EFAIRRVDGKFPQYERIIPKSCTTFMEVSRSQMIGALERLDLVVRDFNKMVAVNLSPGGS 291 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + +P+ G A+E + P+ I FN K+LL+ + + D V + Sbjct: 292 CTLRSRSPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDGVKGLQ-----DSLVRLEFNGPG 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + I+ DS Y+L P+ Sbjct: 347 GHLCIKRIGSDS---------YLYLLAPL 366 >gi|283852477|ref|ZP_06369745.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B] gi|283572085|gb|EFC20077.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B] Length = 392 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 76/399 (19%), Positives = 167/399 (41%), Gaps = 33/399 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V R+DI++ L + II K + L+A DG+L I ++ +E TG A Sbjct: 1 MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAVDGVLRILSTDSSLEFTGQYTAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G V +++VR+L G +I + G + I G + L + F + Sbjct: 61 VTEAGLCGVQGKSFFELVRRLPPG-EIGLTLDAASGN-LLIKQGSRRYKLPVSDRNWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + L+ L++R + ++ E+ + +F E K+ +GH+ Sbjct: 119 FSPFPEGAAVTWSGDFLQELIDRVAYCISDEDTMEAMACMFLKPA-EAAKVEVCGLNGHQ 177 Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--- 235 ++ D + + I++ +K V E+ R L++ + +++++S+ R+ + Sbjct: 178 FSLVAFLNDDIHAMLPPEGILIQKKYVAELKRWLTADE--IELAISQKRLFFRTQEKDET 235 Query: 236 -----SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + S+ L ++P+Y + L ++ L A++RV+I ++ + Sbjct: 236 SAKVETFSLPLSYYQYPDYNTFVSKLATDGVSTLTIDRLELVDALERVAIFNTDNNRCAS 295 Query: 288 LSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L + + G+A E++ + + F K +++I+ + S + V Sbjct: 296 FLFDGPGELSLRSQGQEAGEASETLECAFTGSLDKVAFPTKDIIDILGHFHSPK-----V 350 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L + I G++ ++ ++MPM+I Sbjct: 351 TLTLTGAEGPCGIAGEED---------ADSLVIIMPMKI 380 >gi|189184479|ref|YP_001938264.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str. Ikeda] gi|189181250|dbj|BAG41030.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Ikeda] Length = 432 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 189/418 (45%), Gaps = 52/418 (12%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57 I ++ + L I+E+KN + +V L + LEI A+ +I I + Sbjct: 19 NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78 Query: 58 PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 P + SIT+ L +IV+K+ + N+ V I G+ F L + P Sbjct: 79 PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKVGEYLEFNLATLPI 136 Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + FP +E + L ++E T FA++TEE RY LNGI+ H +++ L AV Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195 Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLA A+ +I +I+PRK + E+ +I +V + + + Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + V Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325 L L + ++ KA E + Y + I FN Sbjct: 316 ILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFN 375 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 KYLL+++ ++ ++ S S I+ ++K +A +++MP+ Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420 >gi|229156276|ref|ZP_04284372.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342] gi|228627151|gb|EEK83882.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342] Length = 316 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 79/337 (23%), Positives = 153/337 (45%), Gaps = 31/337 (9%) Query: 52 EITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 +IT + A G+I V A +I++K+ I E + I + L Sbjct: 5 QITTTLKA-----GTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLN 55 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 FP +EFP+ + + ++ + L + ++T FA+A E R L G+ + + KL Sbjct: 56 GFPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKL 113 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 ATD HRLA+ E I + + IVP + E+L++++S V + LSES I Sbjct: 114 ICAATDSHRLAIRETLISTNV--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFT 171 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL 290 + ++ RLI+G++PN ++IP + ++ + Q VDR S+++S V L + Sbjct: 172 FGTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEI 231 Query: 291 -SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + + ++ + +GK E+ ++ E +I F+ +++L+ + I ++ V Sbjct: 232 VNESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVT 286 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + + A +++ P+R Sbjct: 287 LSFSGSMRPILVEAGTHSA---------AIHLISPVR 314 Score = 49.8 bits (118), Expect = 7e-04, Method: Composition-based stats. Identities = 34/248 (13%), Positives = 85/248 (34%), Gaps = 17/248 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITG 55 +I +E +++ + + + PV V ++ + L A+ E I+ Sbjct: 73 EIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDHNKLICAATDSHRLAIRETLIST 132 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + A+ V + + ++++ + + +E L Sbjct: 133 NVKAN------CIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIEGKY 186 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLCAV 174 S E+ + + V+R+ + N + I NE +K+ + Sbjct: 187 PNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWAN----NNVNLEIVNESTIKVSSN 242 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A+ +++ + Q K +I + + + LR + + ++ S S I + + Sbjct: 243 ASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETVTLSFSGSMRPILVEAGT 302 Query: 235 LSMSVRLI 242 S ++ LI Sbjct: 303 HSAAIHLI 310 >gi|71062229|gb|AAZ21232.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062] Length = 296 Score = 217 bits (554), Expect = 2e-54, Method: Composition-based stats. Identities = 95/313 (30%), Positives = 169/313 (53%), Gaps = 20/313 (6%) Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 +YDI+RK G +I+ + +++ + S F L SEFP T E F + Sbjct: 1 MYDIIRKFSSGKKINLSLTD--VSKLQVESEKSVFNLNCISASEFPLTDENFNQNEFSIK 58 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDGHRLAVAEVDIVAQ 191 S L L+ + F+++ +E R+YL+GIFFH E+ L A ATD HR++++++ + Q Sbjct: 59 SKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSHRMSISKIRLDQQ 118 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 + P II+P+K + ++ +L S D VK+S +S+I + + + +LIDG+FPNY Sbjct: 119 VDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISKLIDGKFPNYIQ 177 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311 VIP +N K+L ++ +VDRV+ +S + VK +LS D L ++V+N + G ES+ Sbjct: 178 VIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVNNTNSGDGKESL 237 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 V ++ ++I FN +YL+++ + D+ + + + S I+ Sbjct: 238 TVKFD-HDLEISFNSRYLIDVASQLDGDK-----IEIFFNDTGSPALIKDP--------- 282 Query: 372 NKVNAFYVLMPMR 384 ++ +V+MPM+ Sbjct: 283 GDFDSIFVVMPMK 295 >gi|267847159|gb|ACY80720.1| chromosomal replication initiation protein [Orientia tsutsugamushi] gi|267847167|gb|ACY80724.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 217 bits (553), Expect = 2e-54, Method: Composition-based stats. Identities = 105/418 (25%), Positives = 189/418 (45%), Gaps = 52/418 (12%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57 I ++ + L I+E+KN + +V L + LEI A+ +I I + Sbjct: 19 NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78 Query: 58 PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 P + SIT+ L +IV+K+ + N+ V I G+ F L + P Sbjct: 79 PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKVGEYLEFNLATLPI 136 Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + FP +E + L ++E T FA++TEE RY LNGI+ H +++ L AV Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195 Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLA A+ +I +I+PRK + E+ +I +V + + + Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I + +++++ +LIDG FP Y+ IP +N K++ +N +L ++++RVS ++ + + V Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325 L L + ++ KA E + Y + I FN Sbjct: 316 ILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFN 375 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 KYLL+++ ++ ++ S S I+ ++K +A +++MP+ Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420 >gi|298376463|ref|ZP_06986418.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] gi|298266341|gb|EFI07999.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19] Length = 370 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 22/388 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I++ ++ +L L +II K++ P+ CH L + +G L I S E IT ++ Sbjct: 1 MTISISKTALLSRLQLLAKIIPAKSSTPILCHFLFKTREGRLFITGSNSEGRITTSLECI 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D SI V LL + +R L + N+ E+ I + F + + S +P Sbjct: 61 FDEEISICVPTSLL-EGLRNLPEQPI--DIIINKDTREIRIKYHGGKFEVVGYDPSTYPG 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E + S L++ L N + + ++IR L+ +F E +C V DGH Sbjct: 118 KRSIEVLDSVSLSAEDLFNGISKVINLAGNDDIRPVLSSVFIETEPE--TVCFVGADGHG 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLSMS 238 + Q+ K+ S+I+ R + IL SS + ++V S + L +S Sbjct: 176 MGFLRKGNDRQVGKI-SVIISRPIASVLKAILPASSDNMEMRVGADWSDVIL--NDYEIS 232 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 R ++G +PN++ V+P +N EL V+ L A+ R S+ S+ + L + DKL + Sbjct: 233 FRNVEGRYPNWKAVVPKANKLELLVDTGQLIGAIKRTSVFSNKASCLIVLRIIRDKLTVF 292 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 + D A E++ V +N I LLEI+ I D + ++ Sbjct: 293 AQDIDFSTSAEETLEVDFNGNEFSIGIKGSLLLEILSCID-----DGRTRLSFSEPSRAI 347 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I + N+ Y+LMPM I Sbjct: 348 LITPE------NQSGNEELTYLLMPMTI 369 >gi|148283999|ref|YP_001248089.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str. Boryong] gi|146739438|emb|CAM79068.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Boryong] gi|267847155|gb|ACY80718.1| chromosomal replication initiation protein [Orientia tsutsugamushi str. Boryong] gi|267847157|gb|ACY80719.1| chromosomal replication initiation protein [Orientia tsutsugamushi] gi|267847169|gb|ACY80725.1| chromosomal replication initiation protein [Orientia tsutsugamushi] Length = 432 Score = 217 bits (552), Expect = 3e-54, Method: Composition-based stats. Identities = 107/418 (25%), Positives = 190/418 (45%), Gaps = 52/418 (12%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57 I ++ + +L I+E+KN + +V L + LEI A+ +I I + Sbjct: 19 NIKLDTKNFSRVLNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78 Query: 58 PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115 P + SIT+ L +IV+K+ + N+ V I G+ F L + P Sbjct: 79 PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKGGEYLEFNLATLPI 136 Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + FP +E V + L ++E T FA++TEE RY LNGI+ H +++ L AV Sbjct: 137 NLFPVIEELTDVDFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195 Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226 ATDGHRLA A+ +I +I+PRK + E+ +I +V + + + Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 +I + +++++ +LIDG FP Y+ IP +N K++ +N +L +++DRVS ++ + + V Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIDRVSTIAVEKSKIV 315 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325 L L + + KA E + Y + I FN Sbjct: 316 ILDLDHHAITIRAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFN 375 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 KYLL+++ ++ ++ S S I+ ++K +A +++MP+ Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQFEEK--------NTSATFIIMPV 420 >gi|146319851|ref|YP_001199562.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33] gi|145690657|gb|ABP91162.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33] Length = 310 Score = 216 bits (551), Expect = 4e-54, Method: Composition-based stats. Identities = 68/306 (22%), Positives = 137/306 (44%), Gaps = 13/306 (4%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ ++ L+ L R I KN IP+ V + + + S +I I I Sbjct: 3 QFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQD 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + GSI + A ++V + D E + ++ ++ G S L+ Sbjct: 63 ENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK---QIVLTSGKSEITLKGKE 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + VLK + T FA +T+E R L G+ F + E L V Sbjct: 120 AEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENKN-LQTV 178 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD HR++ ++ + ++++P +++ E + +V+V S ++I E Sbjct: 179 ATDSHRMSQRKLVLDTS-GDDFNVVIPSRSLREFTADFTDDIETVEVFFSNNQILFRSEH 237 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293 +S RL++G +P+ +IP + + NLR +++R ++S+ + V+L ++++ Sbjct: 238 ISFYTRLLEGTYPDTDRLIPTEFNTTAIFDTANLRHSMERARLVSNATQNGTVQLEIANN 297 Query: 294 KLCMTV 299 + V Sbjct: 298 VVSAHV 303 >gi|227876543|ref|ZP_03994654.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243] gi|306817504|ref|ZP_07451248.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35239] gi|227842857|gb|EEJ53055.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243] gi|304649728|gb|EFM47009.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35239] Length = 352 Score = 216 bits (550), Expect = 6e-54, Method: Composition-based stats. Identities = 72/362 (19%), Positives = 152/362 (41%), Gaps = 22/362 (6%) Query: 31 CHVLLQANDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISF 89 V + A +E + + + P + G++ V LL + R L + +IS Sbjct: 2 AGVHIAATSAGVEFASYDYNVSARVTVEPLELITEGTVVVDGKLLSETARALPN--KISE 59 Query: 90 FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149 ++I+ G + L PE ++P + V + V + + + A + Sbjct: 60 VSFKTEDNYLHITCGSFHQQLLVMPEEDYPQLPQLPQVVGQV-DAEVFSHSISQVSIAAS 118 Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEI 208 +E L GI I E KLC +ATD +R+A+ E+ A ++ ++V K + + Sbjct: 119 RDETLPLLTGISLEIRPE--KLCVLATDRYRMALKEIPWQATNPQINQDLVVKAKNIADA 176 Query: 209 LRILSSKDSSVKVSLSESR-----IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 + ++S S+ +++ + L+ + ++ DG +P+ + + P + V Sbjct: 177 AKNIASS-GSISLAVDGEDESSALVGLSAGGRLFTSQVNDGNYPDVRRIFPEPINIVAVV 235 Query: 264 NCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 ++ A RV+I+S ++ Q + LS + L + A +++ V N + + Sbjct: 236 KVSDFVAAAKRVAIVSANLSNQQITLSFTQGTLEFRAGSGGENTATDAIPVQLNGADISV 295 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 FN + L+E + + + V V I G+ ++ D+ ++ Y++MP Sbjct: 296 SFNSRMLIEGLSVVD-----EPYVRLSFKDETKPVIITGQKEE---TGDDSLDFQYLIMP 347 Query: 383 MR 384 +R Sbjct: 348 IR 349 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 23/210 (10%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITGAIP 58 V+ + R T+P+ + L+ L + A+ EI P Sbjct: 101 VDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPEKLCVLATDRYRMALKEIPWQATNP 160 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFY--LQSFP 114 ++ + V A + D + + IS E+E V +S G F + Sbjct: 161 -QINQD--LVVKAKNIADAAKNIASSGSISLAVDGEDESSALVGLSAGGRLFTSQVNDGN 217 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA- 173 + E + S +R A + I + L+ A Sbjct: 218 YPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQ----ITLSFTQGTLEFRAG 273 Query: 174 -----VATDGHRLAVAEVDIVAQIAKMPSI 198 ATD + + DI I Sbjct: 274 SGGENTATDAIPVQLNGADISVSFNSRMLI 303 >gi|212703754|ref|ZP_03311882.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098] gi|212672722|gb|EEB33205.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098] Length = 384 Score = 215 bits (549), Expect = 7e-54, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 165/392 (42%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK++V + I+E L A II K + L+A G L I A+ IE TG PA Sbjct: 1 MKLSVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEKGSLSIMATDANIEFTGRYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I V D+VR+L G + +E + + G + L F + Sbjct: 61 VKQPGLIGVQGRAFVDLVRQLPAG--VLQLTLDESTGNLLLEQGRRTYKLPVSGAEWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + L+++++R F ++ ++ + ++ ++ +GH+ Sbjct: 119 FSEFPDETPVTWSGDFLQDVLDRVVFCISDDDATDAITCLYMKPCGNG-RIDVCGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLS 236 A+ A++P +++ +K + ++ + L + +++++++ R++L + S Sbjct: 178 FALVSFTHDDLAARLPEEGVLIQKKYLQDMKKWLGVDE--IELNITDKRLYLRTLDGAES 235 Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +SV ++P+Y + L VN +A+ R+ I ++ + L L + Sbjct: 236 LSVPRAGHDYPDYTVFMSRLEGDGVSLLTVNRKEAIEALGRIQIFNTDSDRCAYLDLGDN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 ++ ++ D G A ES+ V Y I F + L++++ + SS V L + Sbjct: 296 EVRLSAQGQDTGSANESLEVTYRGDISRIAFPTRNLMDVLGHFSSPSVD-----MILTGA 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG + + ++MPM+I Sbjct: 351 EGPCGIRGSEDNE---------YTVIIMPMKI 373 >gi|111220716|ref|YP_711510.1| DNA polymerase III subunit beta [Frankia alni ACN14a] gi|111148248|emb|CAJ59918.1| DNA polymerase III, beta chain [Frankia alni ACN14a] Length = 408 Score = 215 bits (548), Expect = 9e-54, Method: Composition-based stats. Identities = 89/405 (21%), Positives = 155/405 (38%), Gaps = 30/405 (7%) Query: 1 MKITVERSDILELLGHACRIIERKN--TIPVSCHVLLQANDGL--------LEIKASGPE 50 M+ +VER + G A R + + T +LL+A L + A E Sbjct: 8 MRFSVERDVFADATGWAARHLPSRPGLTPSALTGLLLEAAAPAAGPQPGAGLLVCAFDSE 67 Query: 51 IEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 + + + A+V+ G + V LL DIV L G + + G F + Sbjct: 68 VAVRAPVAAAVEEPGRVLVPGRLLADIVHSLPATTVEVAVD----GDRLVLRCGSVRFTV 123 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 +++P E+ + V + A +E L + I+ L Sbjct: 124 PLMDLADYPELPRFPAPIG-EVNTLGFAAAVGQVAPAAGRDETVPVLTAVRLEISGHGLI 182 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS----- 224 L ATD +RLAV + + ++ VP K + E+ R +S S + + L Sbjct: 183 L--AATDRYRLAVRAIPWQPTVDDPWALAHVPAKVLAEVARTPTSA-SRIVIGLDLADPA 239 Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284 +R+ L VRLIDG FPNY+ ++P T A R + + R Sbjct: 240 GARLGLAAAGRQTIVRLIDGTFPNYRKLLP-ETAAYTVTAQTAALAAAVRRVAVVATRTA 298 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 ++ + + D++ + +A E++ V Y+ + + FN YLL+ + + DE Sbjct: 299 PLRFTFTRDQVVAEAGDGSGAQASETIPVEYSGPELSVLFNPSYLLDGLGAVEDDEATIG 358 Query: 345 EVVFRLDSSNS-SVFIRGKDK----DSKNNKDNKVNAFYVLMPMR 384 V + + + GKD ++ Y+LMP+R Sbjct: 359 FVAADPAEATARPAVLTGKDSGGVRGPGGGPVDEGAFRYLLMPIR 403 >gi|152989755|ref|YP_001355477.1| DNA polymerase III subunit beta [Nitratiruptor sp. SB155-2] gi|151421616|dbj|BAF69120.1| DNA polymerase III, beta subunit [Nitratiruptor sp. SB155-2] Length = 354 Score = 215 bits (547), Expect = 1e-53, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 182/385 (47%), Gaps = 35/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI + +S ++L +E+K+ ++ HV ++AN+ L +KA+ E + ++ Sbjct: 1 MKIEIRKSLFEQVLTQIQPFLEKKDISQITSHVYIEANE-KLILKATDYETGLKTSLEDF 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T + L DI+R L++ KEN ++IS G S F L F FP Sbjct: 60 NCIKPGLATANGKKLLDIIRILKEDLITLETKENT----LHISQGHSRFKLPMFDAESFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + ++ +++ A+ T ++ LNG I E+ K+ VATD Sbjct: 116 KFPDIDNLPKIDIKGGEFIASLKKIAPAIDTNNPKFELNGALIDIKED--KINFVATDTR 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ V + + K ++I+P+KA+ EI ++ + + E+ + + E+ Sbjct: 174 RLAL--VTLEQSMEKAFNLIIPKKAINEIQKLFLD---DISMFYDETYLIIKNENYLFFT 228 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y+ +IP + + E+ + ++ +A+ +++I+S+ +KL+ D++ Sbjct: 229 KLINGKFPDYERIIPKTLNYEMTLPKESMIEAIKQITIISNE----LKLTFLKDRIIFRS 284 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + +A + V E + N KY+L+ + +I +D+ F Sbjct: 285 LSEENIEAQTEIEVSTPFEEKFVMAVNSKYILDFLAHIDTDQ-----------------F 327 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + G + + + N ++MP+ Sbjct: 328 VMGINDSDLPFELKENNFITIVMPI 352 >gi|313671972|ref|YP_004050083.1| DNA polymerase iii, beta subunit [Calditerrivibrio nitroreducens DSM 19672] gi|312938728|gb|ADR17920.1| DNA polymerase III, beta subunit [Calditerrivibrio nitroreducens DSM 19672] Length = 368 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 89/384 (23%), Positives = 183/384 (47%), Gaps = 22/384 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++++ +L +A I KNT + ++ + A +G + K + + Sbjct: 1 MKFKIIKNEVFYILQNAVNFISIKNTNTILQNIYISAENGKVVFKTNSILSGFCAEVDLD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ G+ TV L+DIV++ D A I FF + G+ + IS G +NF L + FP+ Sbjct: 61 VEMEGTTTVICKKLFDIVKEFSDSAIIEFFFD---GSRLKISSGQANFSLATMSPELFPA 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + YS ++ SS L + +++T F +AT + G+ + L+L ++D R Sbjct: 118 MSDITPEYSLKIDSSQLADALDKTLFCVATNATKIEFTGLHLKVYGNKLELH--SSDFQR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 ++ A + + + + I +P+K +IL++L + ++V++ + L ++ + R Sbjct: 176 ISSAVITLPEEQSDEFIINIPKKTASDILKVL-DRTATVEIYTDLKQFMLVAGNIKIYSR 234 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+ + + E+ V+ +L + +V +S+ A+ LSLSSD++ + Sbjct: 235 LIEKAVKSINTLFSSETPIEVVVDKNSLSDNIRKVLPISTEITHAIVLSLSSDQITVYTL 294 Query: 301 NPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + G+ + + + + P+D+ N K LLEI+ +I + V+ +L + VFI Sbjct: 295 ETEYGQGFDKLNPIKFTGDPIDVILNGKLLLEILSHIDCN-----NVILKLSGRRNPVFI 349 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383 + N Y+++P+ Sbjct: 350 YPE----------YGNYKYLIVPL 363 >gi|313681132|ref|YP_004058870.1| DNA polymerase iii, beta subunit [Sulfuricurvum kujiense DSM 16994] gi|313153992|gb|ADR32670.1| DNA polymerase III, beta subunit [Sulfuricurvum kujiense DSM 16994] Length = 355 Score = 213 bits (544), Expect = 3e-53, Method: Composition-based stats. Identities = 91/385 (23%), Positives = 181/385 (47%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKITV++S + +L H +E+K+T ++ H+LL + L KA+ EI + Sbjct: 1 MKITVDKSVLENILLHLQPFLEKKDTSQITSHILLSTDGRTLYAKATDYEIGLIIQTNSV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V+ GS+T + L DI+R L+D ++ ++I SNF L ++ SEFP Sbjct: 61 NVEEPGSLTANGKKLLDIIRILKDEEIELTLDKDT----LHIRQKRSNFKLPTYKSSEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + + + S +L +++ A T ++ LNG I + V+TD Sbjct: 117 AFPTTDGKPNIAINSHLLIESLKKITPAADTNNPKFELNGALIDIKNNQINF--VSTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ +D +Q SIIVP+KA+ EI ++ + ++++ + + + E Sbjct: 175 RLALVHID--SQNDHELSIIVPKKAIIEIQKLFAD---NIEIFYDNTHLVIKSEDSLFYT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y +IP + + + + + A+ +++ +S+ +KL+ SD + Sbjct: 230 KLINGKFPDYSRIIPKEAQRTIVLPKSVIVTAIKQITTISND----LKLTFQSDSILFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A ++ + E P + N +Y+L+ + +++ E + SN Sbjct: 286 LSDDNIEAKTTVEIENGFESPFILAINSRYILDFLSQVNAT-----EFTLEANESNQPFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ N ++MP+ Sbjct: 341 LK------------DQNFKTIVMPI 353 >gi|154174460|ref|YP_001407306.1| DNA polymerase III subunit beta [Campylobacter curvus 525.92] gi|112803507|gb|EAU00851.1| DNA polymerase III, beta subunit [Campylobacter curvus 525.92] Length = 355 Score = 213 bits (543), Expect = 3e-53, Method: Composition-based stats. Identities = 77/387 (19%), Positives = 174/387 (44%), Gaps = 34/387 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+ + ++ + ++ + +E+++ ++ H+ + A +G+L I+A+ EI + + Sbjct: 1 MKVLINKNVLESIVTNTNPYLEKRDLSAITSHIYIAAKNGVLNIRATDHEIGLAYKLSNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T + L DI++ L+D I N + I +S + L + +FP Sbjct: 61 KITDEGYATANGKKLLDIIKSLKDDEVILETVNN----YLYIKQKNSKYKLPMYKFEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F++ + +L +++ ++ + ++ LNG I + + + V TD Sbjct: 117 EFPSSEGKSKFDVDAVMLGRSLKKILPSIDSNNPKFELNGALLDIRQNFINI--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL++ + SII+P+KA+ EI ++ + +++ E+ + + Sbjct: 175 RLSI--FKFETPTEREFSIIIPKKAINEIQKLFFDR---IEIYYDENILIAQSANFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G++P+Y+ V+P K L++N + + +S++S +K++ + D + Sbjct: 230 KLINGKYPDYERVVPKEIKKRLKLNRDKMIDGIRTISMLSDQ----MKITFTKDSITFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A ++ E + I +YLL+ + +I DD+ + SN + Sbjct: 286 IIEDNSEAKTTIEYQTGLEDEIFIGIKNRYLLDFLTSIE-----DDDFELGFNDSNLAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K+ + V+MP+ I Sbjct: 341 VSSKELTT------------VIMPINI 355 >gi|254779479|ref|YP_003057584.1| DNA polymerase III subunit beta [Helicobacter pylori B38] gi|254001390|emb|CAX29379.1| DNA polymerase III subunit beta [Helicobacter pylori B38] Length = 374 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|149194733|ref|ZP_01871828.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2] gi|149135156|gb|EDM23637.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2] Length = 350 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 97/385 (25%), Positives = 177/385 (45%), Gaps = 35/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I +++ I L+ A E+K+ ++ H+L+ AN+ L IKA+ EI I A Sbjct: 1 MYIKIQKPVIESLINQAMPFTEKKDNTQITSHILIDANEN-LTIKATDKEIGIKLTTDAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G IT++ L+DI++ L++ +I EN+ ++ I S + L SF +EFP Sbjct: 60 IINPGKITINGKKLFDIIKTLKN-KEIEIKSEND---KITIKQDTSIYNLTSFNANEFPE 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+ ++ + +++ ++ +Y LNG F I E K V+TD R Sbjct: 116 FPNPNDLEKLEVDNNEFFDAIKKIFPSIDNNNPKYELNGALFDIKE---KTNFVSTDTRR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV + IIVP++++ EI RI +K+ + + L E+ + Sbjct: 173 LAVYYSNAKGNA---KQIIVPKRSISEIKRIFKD---DMKIFYDDIYLILKDENTLFFTK 226 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FP Y+ +IP S L++ + +VSI+S+ V++ +++DK+ Sbjct: 227 LINGKFPTYEKIIPNSFKYTLKIPKDEFTSYLKQVSIISNE----VRIKITNDKIEFESI 282 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + KA S N N + N +YL + ++ I+S+ E L+ N ++ Sbjct: 283 SDETTKAKTSFNFNSNIEEFEFAVNSRYLFDFLNIINSN-----EFELCLNDPNIPFMVK 337 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 ++MP+ I Sbjct: 338 ------------DGKFITIIMPLNI 350 >gi|78776203|ref|YP_392518.1| DNA polymerase III subunit beta [Sulfurimonas denitrificans DSM 1251] gi|78496743|gb|ABB43283.1| DNA polymerase III, beta subunit [Sulfurimonas denitrificans DSM 1251] Length = 355 Score = 213 bits (542), Expect = 5e-53, Method: Composition-based stats. Identities = 100/385 (25%), Positives = 184/385 (47%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 MKIT+++S I +L H+ +E+K+T ++ HV + A++ L +KA+ EI I Sbjct: 1 MKITIQKSIIENILIHSQPFLEKKDTSQITSHVFIDASNNKLTLKATDYEIGLIVSTDKL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G++T + L DIVR L+DG K + + IS S F L +F +EFP Sbjct: 61 NISQDGNVTANGKKLLDIVRILKDGEINLEVKSD----ILYISQSHSKFKLPTFSYNEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + S L + +++ ++ ++ LNG I + ++ +TD Sbjct: 117 VFPMSEGKSRILIDSHSLIDSLKKITPSIDINNPKFELNGALIDIKQNNINF--ASTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV V+I Q + SIIVP+KA+ EI ++ ++++ E+ + ++ + + Sbjct: 175 RLAV--VNIENQSSSELSIIVPKKAIVEIQKLFFD---NIELYYDENYLIIHSKEYTFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP Y +IP L + + +A+ +++ +S+ VK++ +D + Sbjct: 230 KLINGKFPEYSRIIPKEIKNTLILQKAKMIEAIKQITTISTD----VKITFLNDTVIFES 285 Query: 300 DNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A +N + P I N +YLL+ ++ I+S E L+ SN Sbjct: 286 LSDDNIEAKTEINSITGFTTPFTIAVNSRYLLDFLNTINSS-----EFNIGLNDSNLPFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + N N V+MP+ Sbjct: 341 L------------NDGNFKTVVMPI 353 >gi|326777822|ref|ZP_08237087.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] gi|326658155|gb|EGE43001.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus XylebKG-1] Length = 375 Score = 212 bits (541), Expect = 7e-53, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 147/391 (37%), Gaps = 33/391 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA------NDGLLEIKASGPEIEIT 54 M+ +ERS + + + A R++ ++ +PV +LL G L I E Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + A V G + V L DI + L +G + E G+ +S + F L P Sbjct: 61 VDVDAEVVRPGKVLVMGRRLLDICKVLPEGP-VECAVE---GSRFTVSGDGARFGLSVLP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++PS + + + V A ++ L GI ++ + + L Sbjct: 117 LDDYPSLPPLPQ-LRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTL--A 173 Query: 175 ATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 ATD +R AV + A + ++V + + EI R L + V V+L Sbjct: 174 ATDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSL-GRSGLVSVALDAGSAGFEHA 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-- 291 +VRL++G P ++ + ++ V+ L +AV RVS+++ V+++ S Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVADGDS-PVQMAFSRA 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + + A + + + + FN YL + + + + + L Sbjct: 292 DSSVTLRA-GYEDDVASQRLPASLEGAEELTVAFNPGYLADALAS-----CTEPSLRLLL 345 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 + I + + ++LM Sbjct: 346 LGAGQRAMITDEAGTDVH--------RHLLM 368 >gi|224372072|ref|YP_002606444.1| DNA polymerase III subunit beta [Nautilia profundicola AmH] gi|223589002|gb|ACM92738.1| DNA polymerase III, beta subunit [Nautilia profundicola AmH] Length = 350 Score = 212 bits (540), Expect = 8e-53, Method: Composition-based stats. Identities = 92/385 (23%), Positives = 178/385 (46%), Gaps = 35/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I +E+ I +L E+K+ ++ H+L++AN+ L +KA+ EI I A Sbjct: 1 MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIKANE-KLILKATDKEIGIKVITNAE 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G++T++ DI++ LQ+ +EN ++ I+ S + L SF SEFP Sbjct: 60 IIEPGTVTINGKRFLDIIKTLQNKEIEIKTEEN----QITITQDSSIYKLTSFNASEFPE 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + ++ + L +++ + + +Y LNG F + E K V+TD R Sbjct: 116 FPNTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDLGE---KTNFVSTDTRR 172 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAV A+ +K IIVP++++ EI R++ +++ + + L + + Sbjct: 173 LAVYYSKAKARDSK---IIVPKRSIAEIKRVIRD---DMQIFYDDVYLILKNNEILFFTK 226 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 LI+G+FP Y+ +IP S EL + + +VSI+S+ VK+++ +DK+ Sbjct: 227 LINGKFPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISNE----VKITIKNDKIIFESI 282 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 + + +A S ++ N +Y+++ ++ I +D V L+ N ++ Sbjct: 283 SDETMQAKTSFDLNTPLEDFTFAVNSRYIMDFLNVIE-----NDTFVLGLNEPNIPFVLK 337 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385 N ++MP+ I Sbjct: 338 ------------DENFITIVMPLNI 350 >gi|254456728|ref|ZP_05070156.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1] gi|207085520|gb|EDZ62804.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1] Length = 355 Score = 212 bits (540), Expect = 9e-53, Method: Composition-based stats. Identities = 99/385 (25%), Positives = 180/385 (46%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI V +S I +L +A +E+K+T ++ HV + ND L +KA+ EI + Sbjct: 1 MKIIVSKSIIENILVYAQPFLEKKDTSQITSHVYINVNDSKLTVKATDYEIGFEVSTDKV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S+ GSIT + L DI+R L+DG K + ++IS SNF L +F +EFP Sbjct: 61 SIISTGSITANGKKLLDIIRILKDGEINLEIKND----MLHISQSHSNFKLPTFSYNEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + S L +++ A+ T ++ LNG I ++ + +TD Sbjct: 117 EFPSYEGKSRISIESHSLIESLKKITPAIDTNNPKFELNGALIDIKQDSINF--ASTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ V+I Q SII+P+KA+ EI ++ ++++ ++ + ++ + + Sbjct: 175 RLAI--VNIPNQSVSELSIILPKKAIIEIQKLFFD---NIELYYDDTNLIIHSDQYTFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP Y ++P L + + ++ +++ +SS VK++ ++ + Sbjct: 230 KLINGKFPEYSRIVPKEVSNTLILPKAIMIDSIKQITTISSD----VKITFLNNYITFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A ++ E P I N KYLL+ +++I+S E L+ N Sbjct: 286 LSDDNIEAKTEISYNTGFEEPFVIAINSKYLLDFLNSINSS-----EFSIGLNEGNLPFL 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + N V+MP+ Sbjct: 341 LV------------DDNFKTVVMPI 353 >gi|297622254|ref|YP_003703688.1| DNA polymerase III subunit beta [Truepera radiovictrix DSM 17093] gi|297163434|gb|ADI13145.1| DNA polymerase III, beta subunit [Truepera radiovictrix DSM 17093] Length = 363 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 87/389 (22%), Positives = 162/389 (41%), Gaps = 33/389 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V R + E+L H RI+ +++ P + L+ +DG L + S ++++ + S Sbjct: 1 MNVEVPRKALGEVLAHLERIVPSRSSNPSLSLLRLELSDGHLTLSGSNLDLDLQATLAVS 60 Query: 61 V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G + AH+ + R L G + E E+ + G LQ ++ Sbjct: 61 SSGERGGPWALPAHVFGQVARALP-GELVELTFE---SAELEVRSGSYATKLQLMT-TDL 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P ++ L + +A A E + G+ ++ D + AVATDG Sbjct: 116 PDLV-FPNDLPGRFSAERLGAALSHVRYAAAVAEYQAIFRGVKLELH--DGRTRAVATDG 172 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RLA + +A+ I++P ++ E++++L D K+ LSE ++ L ++ Sbjct: 173 FRLAYYHLGASTGLAQ--DIVIPARSADELVKLL--GDGETKLGLSEGQLSLETGPYRLN 228 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCM 297 V+L++G FP+Y+ VIP + + L + V RV++M+ V L + L + Sbjct: 229 VKLMEGTFPDYERVIPSHFPVSITLAARTLLEGVQRVAVMADRTANNRVDLFVRDGTLQI 288 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 T + G+A E++ V +I N YLL + + D V F S Sbjct: 289 TAEGA-YGRAQEALAVAQEGSESEIALAYNADYLLSALRPVGGD------VRFSFSGPTS 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + S +++P+R Sbjct: 342 PSVLVSLADPS---------YLAMVVPLR 361 >gi|317012318|gb|ADU82926.1| DNA polymerase III subunit beta [Helicobacter pylori Lithuania75] Length = 374 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ V+ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLSAKIST--LMMPITL 374 >gi|260592336|ref|ZP_05857794.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319] gi|260535723|gb|EEX18340.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319] Length = 322 Score = 212 bits (539), Expect = 1e-52, Method: Composition-based stats. Identities = 79/326 (24%), Positives = 152/326 (46%), Gaps = 18/326 (5%) Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S + G V++ + D V++L + +E+ + +G NF + E+P Sbjct: 9 SCEGEGDFAVNSQTILDAVKELPEQPLALDVNFDEMKIYITYQNGSYNFPILG--ADEYP 66 Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + + S + ++ L + + R+ FA A +E+R +NGI+F + + L VA+DG Sbjct: 67 RVQPISDNASSITIDAAKLSDSINRSIFATAQDELRPVMNGIYFDLTSDS--LAIVASDG 124 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 H+L V + + + I+P+K + +L+ V + E ++ ++S Sbjct: 125 HKL-VRNKNFSIKSETPSAFILPKKPATLLKTVLAKDGGDVVIRFDERFADISFADGNLS 183 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 RLI+G++PNY +VIP N + ++ +L A+ RV +S Q ++ +S+ L + Sbjct: 184 CRLIEGKYPNYNSVIPQDNPNRITIDRKSLIGALRRVLPFASDSSQLIRFHVSTGLLELN 243 Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++ D A ES+ Y+ M I F +LEI++N+ S D+VV +L + + Sbjct: 244 AEDIDFSTSAKESVTCEYDGNAMSIGFKGSSMLEILNNLES-----DDVVIQLADPSRAG 298 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 I + + ++MPM Sbjct: 299 VIVP------GVQPENEDVLMLIMPM 318 >gi|109947376|ref|YP_664604.1| DNA polymerase III subunit beta [Helicobacter acinonychis str. Sheeba] gi|109714597|emb|CAJ99605.1| DNA polymerase III, beta chain [Helicobacter acinonychis str. Sheeba] Length = 374 Score = 211 bits (538), Expect = 1e-52, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 170/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D KE+ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNITLETKEDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L G+ ++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ + + S I+P++A+ EIL++ S + E+ + Sbjct: 177 RLSYTQLENISVNSTEEYISCILPKRALLEILKLFY---ESFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P +N ++++ +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYASSFTLNKEGFKESIK----LSSSLSPTIKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + + E + N K+ LE ++ + + + V ++ Sbjct: 290 ESLDSEHSETAKTSIEIEKDLEIEKAFHLGVNAKFFLEALNALGTT-----QFVLHCNAP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ I+ + +++ + K++ ++MP+ + Sbjct: 345 SAPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|218887172|ref|YP_002436493.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str. 'Miyazaki F'] gi|218758126|gb|ACL09025.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str. 'Miyazaki F'] Length = 388 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 85/396 (21%), Positives = 167/396 (42%), Gaps = 30/396 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + +++ D++E L A II K + L+A +G L + A+ IE GA A Sbjct: 1 MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYAAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G V D++RKL G QI+ + E G + I G + L F + Sbjct: 61 IEQPGLAGVQGRAFVDLLRKLPGG-QITLKLDGESGN-LLIEQGRRKYKLPVNDSVWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E S + L+ L++R F ++ E+ + + ++ + A +GH+ Sbjct: 119 FSEFPADGSVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQNA-IEACGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ +A +P I++ +K +GE+ + L + + V++++SE R+H + Sbjct: 178 FAMLRFTHDELMAMLPPEGILIQKKYLGELKKWLGTDE--VELNISEKRLHFRTGDGKET 235 Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL----S 289 S+ L ++P+Y N + + L + + A+DR+ I ++ + + Sbjct: 236 FSLPLSYYQYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSNRCTYFDLDGN 295 Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 + ++ D+G A E++ Y+ I F + L+EI+ + S + + Sbjct: 296 GGGGDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRS-----ERLGLT 350 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L S + G D ++MPM+I Sbjct: 351 LTGSEGPCGLTGSDDSE---------YTVIIMPMKI 377 >gi|182437190|ref|YP_001824909.1| DNA polymerase III subunit beta [Streptomyces griseus subsp. griseus NBRC 13350] gi|178465706|dbj|BAG20226.1| putative DNA polymerase III beta subunit [Streptomyces griseus subsp. griseus NBRC 13350] Length = 375 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 141/371 (38%), Gaps = 25/371 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA------NDGLLEIKASGPEIEIT 54 M+ +ERS + + + A R++ ++ +PV +LL G L I E Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60 Query: 55 GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + A V G + V L DI + L +G + E G+ +S + F L P Sbjct: 61 VDVDAEVVRPGKVLVMGRRLLDICKVLPEGP-VECAVE---GSRFTVSGDGARFGLSVLP 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++PS + + + V A ++ L GI ++ + + L Sbjct: 117 LDDYPSLPPLPQ-LRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTL--A 173 Query: 175 ATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 ATD +R AV + A + ++V + + EI R L + V V+L Sbjct: 174 ATDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSL-GRSGLVSVALDAGSAGFEHA 232 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-- 291 +VRL++G P ++ + ++ V+ L +AV RVS+++ V+++ S Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVADGDS-PVQMAFSRA 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + + A + + + + FN YL + + + + + L Sbjct: 292 DASVTLRA-GYEDDVASQRLPASLEGAEELTVAFNPGYLADALTSF-----TEPSLRLLL 345 Query: 351 DSSNSSVFIRG 361 + I Sbjct: 346 LGAGQRAMITD 356 >gi|317177661|dbj|BAJ55450.1| DNA polymerase III subunit beta [Helicobacter pylori F16] Length = 374 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLSAKIST--LMMPITL 374 >gi|308184281|ref|YP_003928414.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180] gi|308060201|gb|ADO02097.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180] Length = 374 Score = 211 bits (537), Expect = 2e-52, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L G+ +++ L V TD Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ V+ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLSAKIST--LMMPITL 374 >gi|108562901|ref|YP_627217.1| DNA polymerase III subunit beta [Helicobacter pylori HPAG1] gi|107836674|gb|ABF84543.1| DNA polymerase III beta-subunit [Helicobacter pylori HPAG1] Length = 374 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLSAKIST--LMMPITL 374 >gi|217034368|ref|ZP_03439783.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10] gi|216943163|gb|EEC22633.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10] gi|315586816|gb|ADU41197.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori 35A] Length = 374 Score = 210 bits (536), Expect = 2e-52, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ G L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKGKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLSAKIST--LMMPITL 374 >gi|317009521|gb|ADU80101.1| DNA polymerase III subunit beta [Helicobacter pylori India7] Length = 374 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++++ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNTPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|210134703|ref|YP_002301142.1| DNA polymerase III subunit beta [Helicobacter pylori P12] gi|210132671|gb|ACJ07662.1| DNA polymerase III beta subunit [Helicobacter pylori P12] Length = 374 Score = 210 bits (535), Expect = 3e-52, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V R + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLRCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|217032915|ref|ZP_03438391.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128] gi|298736180|ref|YP_003728706.1| DNA polymerase III subunit beta [Helicobacter pylori B8] gi|216945364|gb|EEC24034.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128] gi|298355370|emb|CBI66242.1| DNA polymerase III, beta chain [Helicobacter pylori B8] Length = 374 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIEPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|317180278|dbj|BAJ58064.1| DNA polymerase III subunit beta [Helicobacter pylori F32] Length = 374 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 173/392 (44%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI +++D L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKDQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +N+ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQNHLNAKIST--LMMPITL 374 >gi|308061829|gb|ADO03717.1| DNA polymerase III subunit beta [Helicobacter pylori Cuz20] Length = 374 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|15611519|ref|NP_223170.1| DNA polymerase III subunit beta [Helicobacter pylori J99] gi|11132657|sp|Q9ZLX4|DPO3B_HELPJ RecName: Full=DNA polymerase III subunit beta gi|4154988|gb|AAD06030.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99] Length = 374 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 81/397 (20%), Positives = 172/397 (43%), Gaps = 35/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L G+ N++ L V TD Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS-----KDSSVKVSLSESRIHLNI 232 RL+ +++ ++ + S I+P++A+ EIL++ D + V +E+ Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHAFF-- 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 +LIDG +P+YQ ++P + ++ + S +SS +KL+L Sbjct: 235 ------TKLIDGNYPDYQKILPKEYTSSFTLGKEEFKEGIKLCSSLSST----IKLTLEK 284 Query: 293 DKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + + A S+ + E + N K+ LE ++ + + + V Sbjct: 285 NNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVL 339 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S I+ + +++ + K++ ++MP+ + Sbjct: 340 KCNEPSSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|261839664|gb|ACX99429.1| DNA polymerase III subunit beta [Helicobacter pylori 52] Length = 374 Score = 210 bits (534), Expect = 4e-52, Method: Composition-based stats. Identities = 84/392 (21%), Positives = 173/392 (44%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++D L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKDQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ V+ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|208434423|ref|YP_002266089.1| DNA polymerase III beta-subunit [Helicobacter pylori G27] gi|208432352|gb|ACI27223.1| DNA polymerase III beta-subunit [Helicobacter pylori G27] Length = 374 Score = 209 bits (533), Expect = 5e-52, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++++ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIDPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|308063701|gb|ADO05588.1| DNA polymerase III subunit beta [Helicobacter pylori Sat464] Length = 374 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 173/392 (44%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSSIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|317181822|dbj|BAJ59606.1| DNA polymerase III subunit beta [Helicobacter pylori F57] gi|332673707|gb|AEE70524.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori 83] Length = 374 Score = 209 bits (533), Expect = 6e-52, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ V+ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|297379695|gb|ADI34582.1| DNA polymerase III, beta subunit [Helicobacter pylori v225d] Length = 374 Score = 209 bits (532), Expect = 6e-52, Method: Composition-based stats. Identities = 81/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ + I S+F L F EFP Sbjct: 61 SSDEEGVGTINGKKFLDIISCLKDSSITLETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|261838254|gb|ACX98020.1| DNA polymerase III beta subunit [Helicobacter pylori 51] gi|317179130|dbj|BAJ56918.1| DNA polymerase III subunit beta [Helicobacter pylori F30] Length = 374 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ V+ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|218296135|ref|ZP_03496904.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] gi|218243512|gb|EED10041.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23] Length = 370 Score = 209 bits (532), Expect = 7e-52, Method: Composition-based stats. Identities = 80/393 (20%), Positives = 161/393 (40%), Gaps = 37/393 (9%) Query: 5 VERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 V++ + L A I + P+ ++ L+ + L I+ + E+++ +PA + Sbjct: 3 VKQKLLNRALALARGIAPSGRPLNPLWTYLYLEGREKELVIRTANEEMDLEVRLPAMGEE 62 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-------NFYLQSFPES 116 G + V A V E + + I G + + Sbjct: 63 GGPVLVPASPFIRAVENAPGDED-----EEDKEVIILIQEGQVEVRAWPWRATINAAGPE 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP+ E + + + L + + +A++ E R G+ ++ + AVA+ Sbjct: 118 GFPAWPESDTALRTRMDAQDLLRALSQVRYAVSRESWRAIFRGVQLEFSDRGFR--AVAS 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI---- 232 DG+RLA+ D+ +VP ++V E++R+L + V +++ S + + Sbjct: 176 DGYRLAL--FDLERPQPFTKKAVVPARSVDELMRVLRGAEGEVDLAVGTSTMTMAAWQEK 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + ++VRL+ GEFP+Y+ VIP + + R+A+ RVSI+++ V LSL Sbjct: 234 GVVRIAVRLMPGEFPDYERVIPKEFPLTVTLEAEPFREALKRVSILANKENHRVDLSLEG 293 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + + D GK E + V PM + ++ ++ L+ + + EVV R Sbjct: 294 KRALLFAEG-DYGKGQEEIPVSLEGAPMSLAYDARHFLDAVSRVEG------EVVMRFSG 346 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I D V++P+++ Sbjct: 347 QFTPTLIEPAD---------GSGYLAVVVPLKV 370 >gi|116514953|ref|YP_802582.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara cedri)] gi|116256807|gb|ABJ90489.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara cedri)] Length = 368 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 91/390 (23%), Positives = 187/390 (47%), Gaps = 27/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++++D RII + P+ +++++ N+ L++ +S E+E+ I Sbjct: 1 MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G + +S + +I R + A + F N+ ++ I +S F L + + Sbjct: 61 FFILYKSGCVAISGKKILNICRNISKDAILHFKIINK---KMRICILNSLFELNTMICTN 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + F ++ +LK ++ F++A +IR LNGI + + L V TD Sbjct: 118 FPIFNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNN--LYGVTTD 175 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G+RL+V ++ I I K SII+ +K++ E+ R+++ + VKV ++ + + I + + Sbjct: 176 GYRLSVYKIAINLNI-KNFSIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +++DG FPNY +VI + + L++++ + SI+ + + V L+ +KL + Sbjct: 235 KTKILDGNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLII 294 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 T N + K+ +S + + I F N YLL+I++ + + + S Sbjct: 295 TSKNQEDEKSYDSFIID--NKKIKISFHINVFYLLDILNVLD-----VEVITISFRIPIS 347 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S+ I+ D K Y++MP+++ Sbjct: 348 SIQIQS---------DKKKEILYIIMPLKL 368 >gi|319955762|ref|YP_004167025.1| DNA polymerase iii, beta subunit [Nitratifractor salsuginis DSM 16511] gi|319418166|gb|ADV45276.1| DNA polymerase III, beta subunit [Nitratifractor salsuginis DSM 16511] Length = 355 Score = 209 bits (532), Expect = 8e-52, Method: Composition-based stats. Identities = 88/385 (22%), Positives = 164/385 (42%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI ++ I +L + +E+K+ ++ HV + ++ + EI + Sbjct: 1 MKIRAQKQVIESILINLQPFLEKKDASQITSHVYFETGPDRCIVRGTDNEIGLQIVTREF 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 VD GS T + L DI+R L+D I +N + I S F L F FP Sbjct: 61 EVDHPGSFTANGKKLLDIIRILRDDEIILELLDNA----LMIKQQHSKFKLPIFDAEAFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E + L S L +++ A+ T +Y LNG +I + K V TD Sbjct: 117 SFPEIDGKPKISLDSMNLIRNLKKITPAIDTNNPKYELNGALINIKND--KTDLVGTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAVA I + ++I+P+KA+ EI ++ +++ E+ + + + Sbjct: 175 RLAVA--TIPNNSEEELALILPKKAILEIQKLFLD---QIEIHYDETTLIITNDDYFFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FP+Y+ +IP S ++ + + +A+ V+ +++ +K++ SD + Sbjct: 230 RLINGKFPDYERIIPRSLKYQIELPKKEMLEAIRLVTTIAND----IKITFLSDAILFNA 285 Query: 300 DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + +I N +YLL+ + + D ++ S Sbjct: 286 LSDDNVEAKTEIELNTGIPDRFEISLNSRYLLDFLAQVD-----HDRFTIGMNDSTLPFM 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 +R N ++MP+ Sbjct: 341 VR------------DENFITIIMPI 353 >gi|317010749|gb|ADU84496.1| DNA polymerase III subunit beta [Helicobacter pylori SouthAfrica7] Length = 374 Score = 208 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 80/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D KE+ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNITLETKEDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L G+ ++ L V TD Sbjct: 117 EFPVIDPKVSLEVNAPFLVDAFKKIAPVVEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ ++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLKNISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + S Sbjct: 290 ESLDSEHSETAKTSIEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLQCNES 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ ++ +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLEEKQSHLNAKIST--LMMPITL 374 >gi|317013918|gb|ADU81354.1| DNA polymerase III subunit beta [Helicobacter pylori Gambia94/24] Length = 374 Score = 208 bits (531), Expect = 8e-52, Method: Composition-based stats. Identities = 82/397 (20%), Positives = 173/397 (43%), Gaps = 35/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIDPKVSLEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS-----KDSSVKVSLSESRIHLNI 232 RL+ +++ ++ + S I+P++A+ EIL++ D + V +E+ Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHAFF-- 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 +LIDG +P+YQ ++P + ++++ S +SS +KL+L Sbjct: 235 ------TKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEK 284 Query: 293 DKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + + A S+ + E + N K+ LE ++ + + + V Sbjct: 285 NNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVL 339 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S I+ + +++ + K++ ++MP+ + Sbjct: 340 KCNEPSSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|23007031|ref|ZP_00049078.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 233 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 90/247 (36%), Positives = 135/247 (54%), Gaps = 18/247 (7%) Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLK---LCAVATDGHRLAVAEVDIVAQIAKMPS 197 + FA++TEE RYYLNG++ H + + L VATDGHRLA A + MP Sbjct: 1 MREIGFAISTEETRYYLNGVYLHAPDGAERAEGLVGVATDGHRLARARLPRPEGAEGMPG 60 Query: 198 IIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 II+PRK V EI ++ +V+LS S+I + + +++ +LIDG FP+Y+ VIP Sbjct: 61 IILPRKLVTEIGKLADGDGGPAFEVALSPSKIRIGRDDTTLTSKLIDGTFPDYERVIPRD 120 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 N L ++ L A+DRV+ ++S R +AVKL+L +D++ +T +NPD G+A E + ++ Sbjct: 121 NPHTLALDGKALAPALDRVTTIASERGRAVKLALDADRIVLTQNNPDAGEATEEADAKFD 180 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 PM I FN KYL EI+ + S+ V RL + + R + Sbjct: 181 GAPMQIGFNGKYLAEILALLDSEHVEA-----RLGDAGAPTLWRRRGDALLTV------- 228 Query: 377 FYVLMPM 383 VLMPM Sbjct: 229 --VLMPM 233 >gi|308182656|ref|YP_003926783.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4] gi|308064841|gb|ADO06733.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4] Length = 374 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D + K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N+E L V TD Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQEHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E+ + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V + + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|57504598|ref|ZP_00370710.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228] gi|305432570|ref|ZP_07401731.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli JV20] gi|57019493|gb|EAL56187.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228] gi|304444281|gb|EFM36933.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli JV20] Length = 355 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 176/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+++ ++ + + +E+K++ ++ H+L +A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLLFEADEDKLIIRASDFEIGINYKIRKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESGGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E F++ SS L +++ ++ T +Y LNG F I + ++ V TD Sbjct: 117 NFPKTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--RINFVGTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + I +P+KA+ E+ ++ +++ E+ + ++ Sbjct: 175 RLAVY--TLEKTNNQEFHISIPKKAIMEMQKLFY---EKIEIYYDENMLIAKNDNFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL+ + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELKFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ N + Sbjct: 286 ISLDNMEAKTELEIETGVSEEFNLNIKIKYLLDFLTSIE-----EEQFTLSVNEPNLAFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + + V+MPM Sbjct: 341 VNSQGLS------------MVIMPM 353 >gi|15645127|ref|NP_207297.1| DNA polymerase III subunit beta [Helicobacter pylori 26695] gi|3913505|sp|O25242|DPO3B_HELPY RecName: Full=DNA polymerase III subunit beta gi|2313610|gb|AAD07565.1| DNA polymerase III beta-subunit (dnaN) [Helicobacter pylori 26695] Length = 374 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ L I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLA----IKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI +++ L V TD Sbjct: 117 EFPVIDPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ +++ ++ + S I+P++A+ EIL++ + + E + Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENEMHTF 233 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289 Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + A S+ + E + N K+ LE ++ + + + V R + Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLRCNEP 344 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S I+ + +++ + K++ ++MP+ + Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|7716426|gb|AAF68381.1|AF235031_1 putative DNA-polymerase III, beta chain [Streptomyces coelicolor A3(2)] Length = 366 Score = 208 bits (530), Expect = 1e-51, Method: Composition-based stats. Identities = 77/379 (20%), Positives = 145/379 (38%), Gaps = 29/379 (7%) Query: 1 MKITVERSDILELLGHACRIIE-------RKNTIPVSCHVLLQANDGLLEIKASGPEIEI 53 MK+T++ + + + R++ L + I A EI Sbjct: 1 MKLTIDHTAFAAAVSTPSEVCPPGSGPHSRRSP----AGRL----QQRVRISAFDYEISA 52 Query: 54 TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 A+V G VS LL DIV ++ + G + + G + F L + Sbjct: 53 DTTAAATVTETGRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTL 107 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P E+P+ E + L V + A++ EE L GI H + E L Sbjct: 108 PLDEYPALPE-PGTITGTLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTL 166 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH-LNI 232 ATD AV + S ++P +A+ + + ++ + L Sbjct: 167 YATDAT-FAVRTLSWKDANLPDTSAVIPGRALRRAKATADDTTVDLALPTGDAGLFTLRS 225 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + ++R ++GE P Y + P V L+ A RV+++S+ + +KL+ ++ Sbjct: 226 DLTTTAIRALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTA 285 Query: 293 DK-LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 D L + D +A++S++ + I FN +LL+ ++ + + + V F Sbjct: 286 DSTLVLEGGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNAL-----MAESVQFDFI 340 Query: 352 SSNSSVFIRGKDKDSKNNK 370 S +R D D + + Sbjct: 341 SPTKPAVLRAHDGDDQASA 359 >gi|303326104|ref|ZP_07356547.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3] gi|302864020|gb|EFL86951.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3] Length = 384 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 76/392 (19%), Positives = 170/392 (43%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + I+E L A II K + L+A +G L + ++ IE TG PA Sbjct: 1 MKLTVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEEGSLAVMSTDANIEFTGRYPAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G I V D+VR+L G + +E + + G + L F + Sbjct: 61 VSQPGLIGVQGRAFVDLVRQLPTG--VLNLTLDEASGNLLLEQGRRVYKLPVSGSEWFQN 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + L++++++ F ++ ++ + + E+ + +GH+ Sbjct: 119 FSEFPVENAVTWSGDFLQDVLDKVAFCISDDDAMDAIACLCMKP-GENGHIDVCGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLS 236 A+ A++P+ +++ +K + +I + L + + +++++++ R++L + + Sbjct: 178 FALVSFTHDDLAARLPAEGMLIQKKYLQDIKKWLGADE--IELNITDKRLYLRSLDGAET 235 Query: 237 MSVRLIDGEFPNYQNV---IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +S+ E+P+Y + + ++ A+ R+ I ++ + + LS++ Sbjct: 236 LSLPRAAYEYPDYNIFMGKLADEGVNSMTLDRKEGMDALGRILIFNTESDRCTYMDLSAN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ D+G A ES+ V Y I F + LL+++ + S ++ L + Sbjct: 296 EARLSAQGQDVGSASESLEVAYKGDIARIAFPTRNLLDVLGHFVSAKID-----MLLTGT 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IRG + + ++MPM++ Sbjct: 351 EGPCGIRGPEDP---------DYTVIIMPMKV 373 >gi|268678646|ref|YP_003303077.1| DNA polymerase III subunit beta [Sulfurospirillum deleyianum DSM 6946] gi|268616677|gb|ACZ11042.1| DNA polymerase III, beta subunit [Sulfurospirillum deleyianum DSM 6946] Length = 355 Score = 208 bits (529), Expect = 1e-51, Method: Composition-based stats. Identities = 83/387 (21%), Positives = 171/387 (44%), Gaps = 34/387 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+++++S + +L + +E+K+ ++ HV L + +KA+ EI +T Sbjct: 1 MKVSIKKSILETMLLNVQPYLEKKDLSQITSHVFLAIENEHFVLKATDYEIGLTYHTSEI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T + L DIV+ L+D I + + I S F L ++FP Sbjct: 61 KIASFGDGTANGKKLLDIVKSLKDDEIILETIND----YLYIKQNSSKFKLPMLNPNDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F + S+ L +++ A+ T ++ LNG I + + L VATD Sbjct: 117 LFPTIENKPKFNINSTTLVRSIKKIAPAIDTNNPKFELNGSLIDIKDNTINL--VATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ V + + + S I+P+KA+ EI ++ +++ E+ + + Sbjct: 175 RLAI--VTLQQETTENFSFIIPKKAISEIQKLFFD---DIEIFYDENTLIAQSNHFTFYT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y +IP + + + + + +++ ++SI+S +K++ ++K+ Sbjct: 230 KLINGKFPDYARIIPKNKNYTILLTREFMIESIKQISIISPE----IKITFKAEKIIFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A ++ + + + N +YLL+ + NI + + S Sbjct: 286 LNDDNIEAKTEVDFETGLQNEIYLAVNSRYLLDFLSNIE-----NSNFTLGFNDSGLPFT 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + N ++MP+ I Sbjct: 341 LESE------------NFMTIVMPIMI 355 >gi|257792998|ref|YP_003186397.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] gi|257479690|gb|ACV60008.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius subsp. acidocaldarius DSM 446] Length = 391 Score = 207 bits (528), Expect = 2e-51, Method: Composition-based stats. Identities = 74/381 (19%), Positives = 149/381 (39%), Gaps = 26/381 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAI- 57 MK T D+ ++L R++ V HVL++A + ++ AS ++ + + Sbjct: 1 MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLC 60 Query: 58 ------PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GS + A LY+++++ + + I+ G + F L Sbjct: 61 VEATDSSVEIARSGSCLLPAKELYEVIKRANGPITVETTTD-----RTVITFGKTKFELV 115 Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 F P ++ V + + + L L+ RT +A + R L G+ + D Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSQTRPILTGVQLTLA--DGH 173 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRI 228 L AVATD RLA V + +++P + + L S D V +L S Sbjct: 174 LSAVATDALRLAQYTVSCEDVNGEDRQLVIPAVLLDTLATALPASDDDEEVTFTLGTSSC 233 Query: 229 HLNIES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ M++R ++G +P+ +IP + V L A +RV+I+S Q Sbjct: 234 TVSWGDDAFHMALRGLEGTYPDTARLIPERTAHRVVVERQALLTACERVAILSEADHQRA 293 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + L ++ + G A E++ + + +++ N Y + + + + Sbjct: 294 EFRFTMSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDG----IAQ 349 Query: 346 VVFRLDSSNSSVFIRGKDKDS 366 V L+ +R ++ Sbjct: 350 VEIGLNGPLQPCLLRPVGEEG 370 >gi|188527661|ref|YP_001910348.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470] gi|188143901|gb|ACD48318.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470] Length = 374 Score = 207 bits (527), Expect = 3e-51, Method: Composition-based stats. Identities = 84/395 (21%), Positives = 176/395 (44%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNIES 234 RL+ +++ ++ + S I+P++A+ EIL++ S +++ E+ +H Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENEMH----- 231 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +LIDG +P+YQ ++P + ++++ S +SS +KL+L + Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286 Query: 295 LCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + A S+ + E + N K+ LE ++ + + + V + Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKC 341 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S I+ + +++ + K++ ++MP+ + Sbjct: 342 NEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 374 >gi|86150533|ref|ZP_01068757.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] gi|85838985|gb|EAQ56250.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni CF93-6] Length = 355 Score = 207 bits (526), Expect = 3e-51, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 175/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G TV+A + D+++ L + I +N + I + + L F +FP Sbjct: 61 RVESSGFATVNAKSIADVIKSLNNEEVILETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|307637177|gb|ADN79627.1| DNA polymerase III beta subunit [Helicobacter pylori 908] gi|325995766|gb|ADZ51171.1| DNA polymerase III beta subunit [Helicobacter pylori 2018] gi|325997362|gb|ADZ49570.1| DNA polymerase III beta subunit [Helicobacter pylori 2017] Length = 374 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 84/397 (21%), Positives = 173/397 (43%), Gaps = 35/397 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 STDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + S E+ + L + ++ + + L GI N++ L V TD Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS-----KDSSVKVSLSESRIHLNI 232 RL+ +++ V+ + S I+P++A+ EIL++ D + V +E+ Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHAFF-- 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 +LIDG +P+YQ ++P + ++++ S +SS +KL+L Sbjct: 235 ------TKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEK 284 Query: 293 DKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 + + + A S+ + E + N K+ LE ++ + + + V Sbjct: 285 NNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVL 339 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S I+ + +++ + K++ ++MP+ + Sbjct: 340 KCNELSSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374 >gi|218289463|ref|ZP_03493691.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] gi|218240331|gb|EED07513.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius LAA1] Length = 391 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 75/381 (19%), Positives = 148/381 (38%), Gaps = 26/381 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAI- 57 MK T D+ ++L R++ V HVL++A + ++ AS ++ + + Sbjct: 1 MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLF 60 Query: 58 ------PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 + GS + A LY+++++ + + I G + F L Sbjct: 61 VEATDSSVEIAQSGSCLLPAKELYEVIKRANGPITMETTTD-----RTVIKFGKTKFELV 115 Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 F P ++ V + + + L L+ RT +A R L G+ + D Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSLTRPILTGVQLTLA--DGH 173 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRI 228 L AVATD RLA V + +++P + + L + D V +L S Sbjct: 174 LSAVATDALRLAQHTVSCEDVNGEDRQLVIPAVLLDTLAAALPATDDDEEVSFTLGTSSC 233 Query: 229 HLNIES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ M++R ++G +PN +IP + V L A +RV+I+S Q Sbjct: 234 TVSWGDDAFHMALRGLEGTYPNTARLIPERMTHRVVVERQALLTACERVAILSEADHQRA 293 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + L ++ + G A E++ + + +++ N Y + + + + Sbjct: 294 EFRFTPSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDG----IAQ 349 Query: 346 VVFRLDSSNSSVFIRGKDKDS 366 V L+S +R ++ Sbjct: 350 VEIGLNSPLQPCLLRPVGEEG 370 >gi|309776108|ref|ZP_07671099.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] gi|308916059|gb|EFP61808.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium 3_1_53] Length = 367 Score = 207 bits (526), Expect = 4e-51, Method: Composition-based stats. Identities = 86/388 (22%), Positives = 174/388 (44%), Gaps = 27/388 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + +I+ ++ RI +P + + AN + I S + + I Sbjct: 1 MNFKISKKEIVSVMNRISRIFAATVVLPAYRGIRITANTSGVSIVVSDGTVSMQEFIDTE 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 ++ CG V L ++IV+K DG I KE +L + + + L F E ++ Sbjct: 61 IEIYECGECVVDGRLFFEIVKKAADG-MIWIRKEGKL---LKLKSNKAEMKLVIFAEEQY 116 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P+ SF A+S L++ +++T F+ + ++ R L G+ FHI ++D + +D Sbjct: 117 PNIDFSFPKNSFSAAASALEDAIDKTIFSASDQQTRPVLGGLNFHITKQDCTI--TGSDS 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL+ + + Q K + +P+K + I S D + + SE + ++ ++ + Sbjct: 175 YRLSRIVIPAIGQ--KESVLTIPKKMLSLFTDIF-SGDEELYLHFSERKALISSNNIVLQ 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 L++G FP+ +IP + L++ L A+DR + + + L L +D+L +T Sbjct: 232 SVLLEGAFPDTSKLIPNKFETALKLETEKLIDALDRTAFNKEDGVTIIGLELLTDELLIT 291 Query: 299 VDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ ++G +IES+ E ++CF N +Y+LE + + S + ++ N Sbjct: 292 SESQEVGSSIESIEYIEVEGNQEVCFHCNQQYMLEALKALHSKTCI-----LHYNADNKP 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D +L+P+R Sbjct: 347 FIFQPDDDKEHVQ---------LLLPVR 365 >gi|256830859|ref|YP_003159587.1| DNA polymerase III subunit beta [Desulfomicrobium baculatum DSM 4028] gi|256580035|gb|ACU91171.1| DNA polymerase III, beta subunit [Desulfomicrobium baculatum DSM 4028] Length = 384 Score = 206 bits (524), Expect = 6e-51, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 158/392 (40%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + V + ++++ L A II K V L+A + I A+ IE G PA Sbjct: 1 MFLKVRKEEVIDGLLKASNIIPSKTGAAYLRTVWLKAEGDTISILATDSSIEFVGVYPAV 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + V +++R+L G + ++I G + L + S F Sbjct: 61 ISDGGLVGVQGKKFCELMRRLPPGEITLKL--DPSAKHLHIEQGRRKYKLPANESSWFQD 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + K +++R F +A +E +N I F E D + +GH+ Sbjct: 119 FNPFPAQNAVLWSGDLFKEIIDRIAFCIADDEDLTSMNCIKFAPVENDD-VEICGLNGHQ 177 Query: 181 LAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 + + +V +K + EI + L++ + +++SLS+ R+ L E+ S Sbjct: 178 FGLLRFSNPDIRAVLGQDGFLVSKKYLLEIRKWLTNDE--IEISLSDKRLFLRTENRKES 235 Query: 237 MSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 S+ L F +Y+N I D+ L V+ L A+DR+ + ++ +A + Sbjct: 236 FSLPLKAYVFADYRNFINQYKDRFASNLVVDRHELTDALDRIFVFNTEANKATFFDFGPE 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L + D+G+ E ++ Y I K +LEI+ + V D + F Sbjct: 296 ELSLYCQGQDIGEGTELISCQYQGELSKIALPTKVILEILGHF-----VSDSLTFSFVGP 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I GKD N + MP+ I Sbjct: 351 SEPCRITGKDDP---------NYMIITMPVEI 373 >gi|228908420|ref|ZP_04072263.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] gi|228851211|gb|EEM96022.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] Length = 271 Score = 205 bits (523), Expect = 7e-51, Method: Composition-based stats. Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 16/274 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K+ IP+ + + A+ + + AS I I IP S Sbjct: 1 MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ G+I V A +I++K+ I E + I + L Sbjct: 61 IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 FP EFP+ + ++ + L + ++T FA+A E R L G HI + KL Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTG--LHIVLSNNKLI 174 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 ATD HRLA+ E I + + + IVP + E+L++++S V + LSES I + Sbjct: 175 CAATDSHRLAIRETRISSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 + ++ RLI+G++PN N+IP + V+ Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRK 266 >gi|282863706|ref|ZP_06272764.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] gi|282561407|gb|EFB66951.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE] Length = 373 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 73/385 (18%), Positives = 147/385 (38%), Gaps = 23/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ER + E + A R++ ++ +PV +LL A+DG L + E A+ Sbjct: 1 MEFLSERGALAESVAWAARVLPARSPVPVLGGLLLDASDGRLRVSGLDFEASAAVEAEAA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G + V L DI + L DG + G+ ++ D+ F L P ++P+ Sbjct: 61 TVRPGRVLVMGRRLLDICKVLPDGPVRCAVE----GSRFTVTASDARFGLSVLPLDDYPA 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + A + + A ++ L GI ++ + L A+D +R Sbjct: 117 LPPLPELRGAVDAGEFAAAVADV-AVAAGRDDTLPALTGIRLRLDGSTMTL--AASDRYR 173 Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 AV + A + ++V + + EI R L+ V V+L + +V Sbjct: 174 YAVRTLPWKAADPEVAADVLVSARRLTEIARTLARS-GPVGVALDTGSVGFEHAGARTTV 232 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCM 297 RL+DG P++ + ++ + L +AV RVS+++ ++L+ + D + Sbjct: 233 RLLDGGLPSHDTLFALADPAVAVTDRAALVEAVRRVSVVADGGS-PLQLTFTGGPDASVL 291 Query: 298 TVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + A + + M + FN YL++ + + + + L + Sbjct: 292 LQAGYEDDVASQRLPATLEGADGMTVAFNPAYLMDALSSFE-----EPTIRLSLMGAGRR 346 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLM 381 + + + ++LM Sbjct: 347 AMVTAGED-----TPDTAAHRHLLM 366 >gi|94987228|ref|YP_595161.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia intracellularis PHE/MN1-00] gi|94731477|emb|CAJ54840.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia intracellularis PHE/MN1-00] Length = 383 Score = 205 bits (523), Expect = 8e-51, Method: Composition-based stats. Identities = 71/392 (18%), Positives = 157/392 (40%), Gaps = 26/392 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M + + + I++ L II ++ + ++A L I A+ IE G A Sbjct: 1 MLLYINKEHIIDGLQKVANIIPARSGAAYLRTLWMKAEHSTLTIMATDANIEFIGNYEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G + V+ L D++R+L F + + + + + F Sbjct: 61 IKETGLVGVNGRNLIDLIRRLPAKELCLRF--DSTSGTLILEQERRTYKMPINDPIWFQP 118 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 S ++ + +++R F ++ +E ++ ++ + D + +GH+ Sbjct: 119 LTLFPSEESVVWSADFFQEVIDRVSFCISDDEGSDAISCLYIQPS-NDNYINVCGLNGHQ 177 Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236 A+ K+PS I++P+K + E+ + L ++ ++++++E R + Sbjct: 178 FALTRFINNELSEKIPSEGILIPKKYITELRKWL--GETEIEIAITEKRFFARTIDSKET 235 Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 +SV +P+Y + N L++ + +++DR+SI ++ + + + Sbjct: 236 ISVPRAIFTYPDYTAFLTRLTGDNMSFLKLQRKDCLESLDRISIFNTEGDRCTYFDIKEN 295 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +L ++ D G A E ++V Y I F K L+EI ++ S + + S Sbjct: 296 ELILSAQGQDTGSANEYLDVTYTGNINKIAFPTKSLMEIFNHFESPT-----ITLAMSSV 350 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I G D + ++MPM+I Sbjct: 351 EGPCGITG---------DEDKDYTVIIMPMKI 373 >gi|160902631|ref|YP_001568212.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95] gi|160360275|gb|ABX31889.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95] Length = 370 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 87/390 (22%), Positives = 165/390 (42%), Gaps = 28/390 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M ++ + + + RK P+ + L D L I A+ + + Sbjct: 1 MSFEIDTRVLKNAVQLTSNAVSRKTANPILKGIKLAVEDDELHIYATDLQTGFHKWLKVK 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D S V + +I+ L S L + IS G+S F L + EFP Sbjct: 61 DSDENFSTVVEQTIFLEILSNL-----TSDTITITLDGVLKISGGNSVFRLPTMDPDEFP 115 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIR--YYLNGIFFHINEEDLKLCAVATD 177 S E S L +++ N++++ F + LN +++ + L VATD Sbjct: 116 SLAFEVTGNSILLDRTIITNMIDKVVFCALKDSSSLSRNLNAVYWDFRQGGF-LNLVATD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI--ES 234 +RLA++E + P ++ K++ E+ ILSS K V+V S S+I + ++ Sbjct: 175 SYRLALSESKLEDDNILSP-FLLSLKSMDELKTILSSAKTEKVRVVQSGSQILFDFEEDN 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +ID EFPNY ++IP S +++ + + R+SI + + L++ + Sbjct: 234 NQLIYNVIDAEFPNYLSIIPESFITKIKAKTSEFLAIMKRMSITAGSEEYTL-LNIEDGR 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + +PD+G+A E ++V ++I ++ +Y E ++ I + V F D Sbjct: 293 IQFYASSPDVGEAKEEIDVEQEGKNIEIAYSPRYFREALERIET-------VEFEFD--- 342 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I ++K + + +++MP R Sbjct: 343 ----ISDEEKPTILKPLEDNSYMFIIMPKR 368 >gi|320009941|gb|ADW04791.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC 33331] Length = 367 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 77/380 (20%), Positives = 145/380 (38%), Gaps = 25/380 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65 ER + + + A R++ ++ +PV +LL A+ G L + E A G Sbjct: 2 ERGALTDAVSRAARVLPARSPVPVLGGLLLDADTGRLRVSGLDFEASARVETQAHTVRPG 61 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125 + V L I + L +G + E G+ + ++ S F L P ++P+ Sbjct: 62 KVLVMGRRLLAICKVLPEGP-VECAVE---GSRLTVTGDGSRFGLSILPLDDYPALPPLP 117 Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 V A + V + A ++ L GI ++ + L ATD +R AV Sbjct: 118 DVRGTVDAGE-FGSAVAQVAVAAGRDDTLPTLTGIRLGLDGSTMTL--AATDRYRFAVRT 174 Query: 186 VDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244 + A+ ++V + + EI R L + V VS+ +VRL+DG Sbjct: 175 LPFEAKAPDVTADVVVSARRLTEIARSL-GRSGRVDVSVDGGSAGFEHAGTRTTVRLLDG 233 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNP 302 P + + + ++ L +AV RVS+++ ++++ S D + Sbjct: 234 RLPRHDKLFALGDTAVAVMDRARLVEAVRRVSVVADGGS-PLQMTFSPGPDGSALLQAGF 292 Query: 303 DMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 + A + + ++ M + FN YL + + + D V RL I G Sbjct: 293 EDDVAAQRLPAAFDGAGEMTVAFNPAYLTDALSSFE-----DATVRMRLLGPGQRAMISG 347 Query: 362 KDKDSKNNKDNKVNAFYVLM 381 + ++ ++LM Sbjct: 348 EGAGPSAHE-------HLLM 360 >gi|223038521|ref|ZP_03608815.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267] gi|222880378|gb|EEF15465.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267] Length = 355 Score = 205 bits (522), Expect = 9e-51, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 170/387 (43%), Gaps = 34/387 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+ + ++ + ++ + +E+K+ ++ H+ + A DG+L IKA+ EI + + Sbjct: 1 MKVAINKNALESIVTNTNPYLEKKDLSAITSHIFISAKDGILNIKATDHEIGLAYKLSNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ T + L DI+R L+D N + I +S + L + +FP Sbjct: 61 KIMDEGNATANGKKLLDIIRSLKDEEVTLETVNN----YLYIKQKNSKYKLPMYKFEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E FE+ + +L +++ ++ ++ LNG I + + + V TD Sbjct: 117 NFPAIENKNKFEIDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+V + Q S+I+P+KA+ EI ++ K +++ ++ + + Sbjct: 175 RLSVFRFETPTQSE--FSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G FP+Y VIP + LR++ + + + VSI+S K+ + + Sbjct: 230 KLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISEST----KIVFAPQTISFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A ++ E + + +YLL+ + +I +D F + SN + Sbjct: 286 IVEDNSEAKTTIEFATGLEEEIYVGVKNRYLLDFLQSIE-----EDHFEFGFNDSNLAFT 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + V+MP+ + Sbjct: 341 VSSNELKT------------VIMPINL 355 >gi|161833638|ref|YP_001597834.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri GWSS] gi|152206127|gb|ABS30437.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri GWSS] Length = 366 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 86/385 (22%), Positives = 169/385 (43%), Gaps = 21/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK +D+L+ L +I N +P+ L+ +L I S EI +T + Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + +L DI++ + + E+ ++ I + + + + + E+P Sbjct: 61 NSINYGSAAIPYKILIDILKNIPEQPLTFI---KEIDNKLKIIYQNGEYNISIYSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S ++ L N++ T FA+ ++IR +NG+ F IN + V+T+ Sbjct: 118 KYSILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNF--VSTNTT 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + K+ I+ +K + + L + D V +S ++ + + Sbjct: 176 ILVKYTRKDILSNNKI-KFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G +PNY ++I +K L +N ++ RV+ S + Q + L+LS ++ ++ Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + KA E + Y P+ I FN K+L++I+ NI+ D++ F + + SS Sbjct: 294 WDYNN-KAFEYLFCSYEGDPIKIGFNSKFLIDILSNINC-----DDIKFEILDNKSSCKF 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 N N ++MP++ Sbjct: 348 TP-------NLSNIEEILILIMPIK 365 >gi|293977750|ref|YP_003543180.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri DMIN] gi|292667681|gb|ADE35316.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri DMIN] Length = 370 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 170/385 (44%), Gaps = 19/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK +D+L+ L +I N +P+ L+ +L I S EI +T + Sbjct: 1 MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + +L DI++ + + E+ ++ I + + + + + E+P Sbjct: 61 NSINYGSAAIPYKILIDILKNIPEQPLTFI---KEIDNKLKIIYQNGEYNISIYSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E S ++ L N++ T FA+ ++IR +NG+ F IN + V+T+ Sbjct: 118 KYSILENTNSILISEKQLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNF--VSTNTT 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + K+ I+ +K + + L + D V +S ++ + + Sbjct: 176 ILVKYTRKDILSNNKI-KFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G +PNY ++I +K L +N ++ RV+ S + Q + L+LS ++ ++ Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + KA E + Y P+ I FN K+L++I+ NI+ D++ F + + SS + Sbjct: 294 WDYNN-KAFEYLFCSYEGDPIKIGFNSKFLIDILSNINC-----DDIKFEILDNKSSCKL 347 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 + N ++MP++ Sbjct: 348 TP-----NLSISNIEEILILIMPIK 367 >gi|283956180|ref|ZP_06373665.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 1336] gi|283792334|gb|EFC31118.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 1336] Length = 355 Score = 205 bits (522), Expect = 1e-50, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|315639364|ref|ZP_07894526.1| DNA-directed DNA polymerase III beta subunit [Campylobacter upsaliensis JV21] gi|315480690|gb|EFU71332.1| DNA-directed DNA polymerase III beta subunit [Campylobacter upsaliensis JV21] Length = 355 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI + ++ + + +++K+ V+ H+L +AN+ L IKAS EI I I Sbjct: 1 MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T +A + D+++ L + I +N + I ++ + L F +FP Sbjct: 61 RIENPGFATANAKSIADVIKNLNNEEIILETIDNF----LFIRQKNTKYKLPMFNYEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG + I E K+ V++D Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + I +P+KA+ E+ ++ +++ E+ + E+ Sbjct: 175 RLAIY--TLNKTNDNEFHISIPKKAIMEMQKLFY---EKIEIYYDENMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP +E + + A+ ++S+++ ++KL + +K+ Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFTLQTEDFIDALKKISVVTE----SMKLHFTKNKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + E + KYLL+ +++I ++E +++ N + Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKIKYLLDFLNSIE-----ENEFKIKINEPNLAFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + + + V+MPM Sbjct: 341 VSSNELEV------------VIMPM 353 >gi|157414324|ref|YP_001481580.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni 81116] gi|157385288|gb|ABV51603.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 81116] Length = 355 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|148926821|ref|ZP_01810500.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni CG8486] gi|145844546|gb|EDK21653.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni CG8486] Length = 355 Score = 205 bits (521), Expect = 1e-50, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELNFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|57236916|ref|YP_178031.1| DNA polymerase III subunit beta [Campylobacter jejuni RM1221] gi|86152375|ref|ZP_01070585.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|86153999|ref|ZP_01072201.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|205355743|ref|ZP_03222513.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|57165720|gb|AAW34499.1| DNA polymerase III, beta subunit [Campylobacter jejuni RM1221] gi|85840672|gb|EAQ57924.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 260.94] gi|85842537|gb|EAQ59750.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni HB93-13] gi|205346520|gb|EDZ33153.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni CG8421] gi|307746966|gb|ADN90236.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni M1] gi|315057443|gb|ADT71772.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni S3] gi|315931304|gb|EFV10273.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 327] Length = 355 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|124516517|gb|EAY58025.1| DNA polymerase III, beta chain [Leptospirillum rubarum] gi|206603406|gb|EDZ39886.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way CG'] Length = 387 Score = 204 bits (520), Expect = 2e-50, Method: Composition-based stats. Identities = 87/395 (22%), Positives = 168/395 (42%), Gaps = 24/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV++ L+ L + ERKN + + +L++A D + A+ + +P Sbjct: 1 MEITVDQEAFLDGLQRVALLAERKNLVQIGSFILIEARDQKAILFATDNQTGGRFEVPCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G TV+ L+ + R+L G EN I + L+ E+ Sbjct: 61 VRTPGKTTVAGKKLHQLFRELPSGKVSLTRLEN---GSTRIERERLMYDLKGIDPEEYVG 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E + YSF ++ + L+ +T + +E + +NG+ FH ++L V TDG Sbjct: 118 FPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESKP-MNGVLFHRVREGSTVRLNIVGTDG 176 Query: 179 HRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRI 228 HRL V + I+ +K + ++L +L S SV+V ++ Sbjct: 177 HRLHHGTVLLGEDAGYDLAGQTESRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVNPKYA 236 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 RL+ FPNY++ P + + + + L ++ R+S++S + + V Sbjct: 237 TFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAEIV-F 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S + L ++ N ++G++ E++ V+ P + FN + ++ + + D V Sbjct: 296 SWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMDAV-M 354 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 D + SS S + + ++ YV+MP+ Sbjct: 355 DPDPAKSSSM------PSIWSCAEEPDSRYVIMPL 383 >gi|313611865|gb|EFR86324.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL F2-208] Length = 256 Score = 204 bits (519), Expect = 2e-50, Method: Composition-based stats. Identities = 69/267 (25%), Positives = 137/267 (51%), Gaps = 16/267 (5%) Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ +VLKN+V +T FA++ E+R L G+ + I E KL AVATD HR Sbjct: 1 LPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLSAVATDSHR 58 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ E+ + I + +I++P K++ E+ +IL S++++L+ ++I ++ L R Sbjct: 59 LALREIPLETDIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKLKDLLFYSR 118 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLCMT 298 L++G +P+ +IP EL +N QA+DR S+++ V ++L + ++ ++ Sbjct: 119 LLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVS 178 Query: 299 VDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 ++P++G E++ + + I FN KY+++ + D++ + Sbjct: 179 SNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQISFSGTMRPF 233 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +R KD + N ++ P+R Sbjct: 234 VLRPKDAANPNE------ILQLITPVR 254 >gi|315123618|ref|YP_004065622.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni ICDCCJ07001] gi|315017340|gb|ADT65433.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni ICDCCJ07001] Length = 378 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 75/365 (20%), Positives = 169/365 (46%), Gaps = 22/365 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKD 363 ++ + Sbjct: 341 VKSQG 345 >gi|307591377|ref|YP_003900176.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822] gi|306986231|gb|ADN18110.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822] Length = 455 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 83/442 (18%), Positives = 174/442 (39%), Gaps = 73/442 (16%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ TV ++ I E L I+ K + P+ +VL++A D L + + +T + P S Sbjct: 1 MEFTVSQTTISEHLAQIKTILPPKPSYPILSNVLMKAKDQQLILTTFDSSLGLTTSFPVS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT------EVNISHGDSNFYLQSFP 114 ++ GSI V+ LL ++ KL + E + + +S + LQ Sbjct: 61 IEEEGSICVNGKLLVGLINKLNATELTFKLETTEDFEEDENPLILIVQAENSIYRLQGIE 120 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +++P E + S L S L + + + AT+E + L G+ F + KL + Sbjct: 121 SNQYPELPILETLLSVTLPSHSLLSALIPVLRSYATDETKQILRGVHFLFS--SSKLELI 178 Query: 175 ATDGHRLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSS------------ 218 +TDGHRL+++++ + + I +P +++++L Sbjct: 179 STDGHRLSMSKLSLDDLAGIDEIESEGITIPGDTCQQLVKLLRGFKEDVEQPSQSPQEDE 238 Query: 219 ---------------------------------VKVSLSESRIHLNIE-SLSMSVRLIDG 244 VK+S ++ + M RL+ G Sbjct: 239 CGTRSAPQSESVQGEDEPSPTIDNNFSEPVCSTVKISWDNKQVQFELGAHQMMISRLLQG 298 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV-KLSLSSDKLCMTVDNPD 303 +PN ++P + +++A++R++I++ + V + S ++ + + D Sbjct: 299 TYPNAHQLLPSEYPNSINFQVLEMKRAINRLNILNPKKNVLVLECSAQRQQIKLYWLSSD 358 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 + IE++ + I FN KY + + + + E+ F + + + + Sbjct: 359 HHQGIENIPAVVE-RDLTIAFNSKYFHDAVLALPGN-----ELKFEAIDPDQASRLVSLE 412 Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385 D +AF +LMP+++ Sbjct: 413 PDC--------SAFVLLMPVKV 426 Score = 36.0 bits (82), Expect = 9.5, Method: Composition-based stats. Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 18/146 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIK--ASGPEIEITGAIP 58 MK + R +IL +KN + V A +++ +S I IP Sbjct: 322 MKRAINRLNILN---------PKKNVL-VLEC---SAQRQQIKLYWLSSDHHQGIE-NIP 367 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 A V+ +I ++ +D V L + + ++ V++ S F L + + Sbjct: 368 AVVERDLTIAFNSKYFHDAVLALPGNELKFEAIDPDQASRLVSLEPDCSAFVLLMPVKVD 427 Query: 118 -FPSTKEEEYVYSFELASSVLKNLVE 142 FP S + K L + Sbjct: 428 QFPQVPTVNKEPSLPPNQTKDKELAK 453 >gi|57506227|ref|ZP_00372146.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195] gi|57015495|gb|EAL52290.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195] Length = 355 Score = 203 bits (518), Expect = 3e-50, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI + ++ + + +++K+ V+ H+L +AN+ L IKAS EI I I Sbjct: 1 MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T +A + D+++ L + I +N + I ++ + L F +FP Sbjct: 61 RIENPGFATANAKSIADVIKNLNNEEIILETIDNF----LFIRQKNTKYKLPMFNYEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG + I E K+ V++D Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + I +P+KA+ E+ ++ +++ E+ + E+ Sbjct: 175 RLAIY--TLNKTNDNEFHISIPKKAIMEMQKLFY---EKIEIYYDENMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP +E + + A+ ++S+++ ++KL + +K+ Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFALQTEDFIDALKKISVVTE----SMKLHFTKNKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + E + KYLL+ +++I ++E +++ N + Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKIKYLLDFLNSIE-----ENEFKIKINEPNLAFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + + + V+MPM Sbjct: 341 VSSNELEV------------VIMPM 353 >gi|283953663|ref|ZP_06371194.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni 414] gi|283794704|gb|EFC33442.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni 414] Length = 355 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + I +N + I + + L F +FP Sbjct: 61 RVESNGFATANARSIADVIKSLNNEEVILETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNIEGKNHFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + + +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKTNNQEFNFSIPKKAIIEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++++++ +KL + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKINVVTEK----MKLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ KYLL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVNEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|307128509|ref|YP_003880539.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri CARI] gi|306482971|gb|ADM89841.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri CARI] Length = 375 Score = 203 bits (517), Expect = 3e-50, Method: Composition-based stats. Identities = 84/385 (21%), Positives = 171/385 (44%), Gaps = 18/385 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59 MK +D+ L +I +P+ L + +L I S EI + I Sbjct: 1 MKFISSSNDLFRSLKSIYNVININKKLPILETFLFKIKKKNILNITVSDLEITMRTQIKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + GS + + +L +I++K+ + E+ ++ I + + + + E+P Sbjct: 61 NSINFGSAAIPSKILIEILKKIPEQPLTFI---KEIDNKLKIISQNGEYNISIYSSEEYP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E SF ++ L ++ T FA+ ++IR +NG+FF IN ++TD + Sbjct: 118 KYSKLEKTDSFFISEKKLLKIINYTLFAVGNDDIRPVINGVFFEINYN--ISSFISTDTN 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L + + K I+P+K + + L+ D SV + ++ ++ + Sbjct: 176 LLVKYSIKEIFSKKKFF-FIIPKKPLNLLKNNLNYTDKSVLIEYNKYNTSFLFQNKKLIC 234 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G +PNY ++I + +K L +N ++ RV + S++ + L+ S + ++ Sbjct: 235 TLINGNYPNYLSIINNNYNKILIINKNYFINSIKRVILFSNLLTSQILLNFSKSQSKISS 294 Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + + KA E + +Y P++I FN KYL+EI+ NI+ D++ + ++ +S Sbjct: 295 WDINSNNKAFEYLFCHYEGDPIEIGFNSKYLIEILSNINC-----DDIKLEMFNNKTSCR 349 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + N K ++MP+ Sbjct: 350 LTP-----IINLSKKEEILILIMPI 369 >gi|255323606|ref|ZP_05364736.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277] gi|255299320|gb|EET78607.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277] Length = 355 Score = 203 bits (516), Expect = 5e-50, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 171/387 (44%), Gaps = 34/387 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+ + ++ + ++ ++ +E+K+ ++ H+ + A DG+L IKA+ EI + + Sbjct: 1 MKVAINKNALESIVTNSNSYLEKKDLSAITSHIFIGAKDGILNIKATDHEIGLAYELSNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ T + L DI+R L+D N + I +S + L + +FP Sbjct: 61 KIMDEGNATANGKKLLDIIRSLKDEEITLETVNN----YLYIKQKNSKYKLPMYKFEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E FE+ + +L +++ ++ ++ LNG I + + + V TD Sbjct: 117 NFPTVENKNKFEVDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+V + Q S+I+P+KA+ EI ++ K +++ ++ + + Sbjct: 175 RLSVFRFETPTQSE--FSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G FP+Y VIP + LR++ + + + VSI+S K+ + + Sbjct: 230 KLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISEST----KIVFAPQTISFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A ++ E + + +YLL+ + NI ++ F + SN + Sbjct: 286 IVEDNSEAKTTIEFATGLEEEIYVGVKNRYLLDFLQNIE-----EEHFEFGFNDSNLAFT 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + V+MP+ + Sbjct: 341 VSSNELKT------------VIMPINL 355 >gi|206603336|gb|EDZ39816.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way CG'] Length = 387 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 88/395 (22%), Positives = 168/395 (42%), Gaps = 24/395 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ITV++ L+ L + ERKN + V +L++A D + A+ + +P Sbjct: 1 MEITVDQEAFLDGLQRVALLAERKNLVQVGSFILIEARDQKAILFATDNQTGGRFEVPCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G TV+ L+ + R+L G EN I + L+ E+ Sbjct: 61 VRTPGKTTVAGKKLHQLFRELPAGKVSLTRLEN---GSTRIERERLMYDLKGIDPDEYVG 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178 E + YSF ++ + L+ +T + +E + +NG+ FH ++L V TDG Sbjct: 118 FPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESKP-MNGVLFHRVREGSTVRLNIVGTDG 176 Query: 179 HRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRI 228 HRL V + I+ +K + ++L +L S SV+V ++ Sbjct: 177 HRLHHGTVLLGEDAGFDLAGQTESRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVNPKYA 236 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 RL+ FPNY++ P + + + + L ++ R+S++S + + V Sbjct: 237 TFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAEIV-F 295 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S + L ++ N ++G++ E++ V+ P + FN + ++ + + D V Sbjct: 296 SWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMDAV-M 354 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 D + SS S + + ++ YV+MP+ Sbjct: 355 DTDPAKSSSM------PSIWSCAEEPDSRYVIMPL 383 >gi|291276245|ref|YP_003516017.1| DNA polymerase III subunit beta [Helicobacter mustelae 12198] gi|290963439|emb|CBG39268.1| DNA polymerase III, beta chain [Helicobacter mustelae 12198] Length = 354 Score = 202 bits (515), Expect = 6e-50, Method: Composition-based stats. Identities = 78/355 (21%), Positives = 171/355 (48%), Gaps = 21/355 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK V ++ +L H +++K++ ++ H+ L+ + L++KA+ EI + + Sbjct: 1 MKFHVNKNHFEIILNHLQPFLDKKDSSQITSHIYLETKEEKLQLKATDYEIGLETKVDIK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G+ TV+ + +IV++L++G ++I G S F L F +E+P Sbjct: 61 KEIDGNATVNGKKILEIVKRLKEGEITIETDSQN----LHIKQGKSKFKLPMFDANEYPK 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ + +S +++ A+ + + L G D VATD R Sbjct: 117 NIVDKNITEIHFDTSSFIQSLKKITPAIDSTNQKPELTGALLEFK--DYSFHFVATDTRR 174 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA+ + DI Q + SII+P+KA+ EI ++ S ++K+ +E+++ + E S R Sbjct: 175 LALIKQDI--QSIESFSIILPKKAISEISKLFS---ENIKIFYNETQLIIENEYYSFFTR 229 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---CM 297 LI+G FP+YQ ++P +L++ + +A+ ++ +S Q +K++L ++ + Sbjct: 230 LINGRFPDYQKILPKELKIQLQLPKDKVIEAIRLINSLS----QKIKITLRESEVFFETI 285 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD--EVVDDEVVFRL 350 +++N + + + I + +++L+ + I ++ E+ +EV Sbjct: 286 SIENSEQAQTQFEYQTNIK-EEISIGVDSRHILDFLAQIDTNIFEICINEVTTPF 339 >gi|308069816|ref|YP_003871421.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681] gi|305859095|gb|ADM70883.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa E681] Length = 372 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 81/396 (20%), Positives = 174/396 (43%), Gaps = 37/396 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I V+ + + E L A + I K IP+ L++A + + + + I + + Sbjct: 1 MNIVVDSALLAEALEDASKAISTKAIIPILSCFLIEATEDRVTVTGTDDRATIQSFVEEN 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 +D GS + +L DI++K+ ++ + + G +V I + + P E+ Sbjct: 61 IDIKETGSAALP-KVLLDILQKINGKIEL----QVKNGNQVTIKSRNKEIEITGMPPEEY 115 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATD 177 P+ E E+ LKNL+++T FA + + G+ + K+ VAT+ Sbjct: 116 PAPPEINENEFVEIKGKDLKNLIKKTVFAADIDGKSLPIITGVNVILQ--TGKIQMVATN 173 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES------RIHLN 231 HRLA AE + I + + ++ + + E+ +I++ D V+ S+S Sbjct: 174 RHRLAHAEREF--DIGNIGTAVIEARGIIELQKIVNDNDE-VEFGFSKSSGGEVIYAFAR 230 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290 E R+++G +P+ + + E+ VN L ++++ + ++ + AV S+ Sbjct: 231 TERFIFYSRVLEGIYPDTTHTMAIKAVTEITVNRKELIESLELIFTLAKEEKNNAVTFSV 290 Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 S ++ + + GKA E++ + +N ++ N KY+L+ + + +D + Sbjct: 291 SEKEINIRGKGKETGKATENITPISFNGENFNLTLNAKYVLDALKVLE-----NDVITLG 345 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + +R + ++FY+++P R+ Sbjct: 346 YTGSLKPLTLRSDE-----------SSFYIVLPYRV 370 >gi|284925305|gb|ADC27657.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni IA3902] Length = 355 Score = 202 bits (513), Expect = 1e-49, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ ++L + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MRLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ K+LL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|218778134|ref|YP_002429452.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] gi|218759518|gb|ACL01984.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans AK-01] Length = 370 Score = 201 bits (512), Expect = 1e-49, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 156/390 (40%), Gaps = 27/390 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++T+ + +L + A + + P + ++A L I+A+ + + Sbjct: 1 MQLTIPKQALLRAVLAAEHVAAKDKNFPALGGIRMEAGHQSLTIQATDLDTGYASVLTLE 60 Query: 61 -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G+ A L ++ + + I+ + L +FP Sbjct: 61 DIQEPGAALPPAQQLKAVIMDWPEEDARLSVE----NGFPTITGERTRTSLAGMDPEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLNGIFFHINEEDLKLCAVATD 177 E + F++ L+ L+ +T + + E R ++ G H+ + L TD Sbjct: 117 EIPEPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGA--HLARDGEHLVITTTD 174 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 G +LA I II+ + +++ + V + ++ S + ++ + Sbjct: 175 GCQLARGSFPIQDARLPEKGIILHKTGAAKLMEFAKNAPGDVALGVTSSHLSAESQNERL 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 RL+ G++P+ +IP D +N A+ RV I++S + QA L+L ++ + Sbjct: 235 ISRLVQGDYPDTARIIPV-LDTGFAINRFEFLAALKRVGILTSEKYQAASLALEHSRITV 293 Query: 298 TVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 TVDNP++G + E+++ ++ P C+N L + ++S + V + + Sbjct: 294 TVDNPELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTS-----ENVEVKARDAA 348 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + + G+ ++MPM+ Sbjct: 349 SPLVLSGE---------KDPGYLALVMPMK 369 >gi|121612492|ref|YP_999721.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|167004698|ref|ZP_02270456.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni 81-176] gi|87249053|gb|EAQ72015.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 81-176] Length = 355 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 175/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + + ++ + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFVRQKNTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ ++L + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MRLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ K+LL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|88597670|ref|ZP_01100903.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|218561695|ref|YP_002343474.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|88189974|gb|EAQ93950.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 84-25] gi|112359401|emb|CAL34183.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni NCTC 11168] gi|315930329|gb|EFV09417.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. jejuni 305] Length = 355 Score = 201 bits (511), Expect = 2e-49, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 174/385 (45%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L IKAS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + + + + L F +FP Sbjct: 61 RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFVRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ ++L + DK+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MRLHFNKDKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ K+LL+ + +I +++ ++ NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVNEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|152991599|ref|YP_001357320.1| DNA polymerase III subunit beta [Sulfurovum sp. NBC37-1] gi|151423460|dbj|BAF70963.1| DNA polymerase III, beta subunit [Sulfurovum sp. NBC37-1] Length = 355 Score = 200 bits (510), Expect = 2e-49, Method: Composition-based stats. Identities = 85/385 (22%), Positives = 169/385 (43%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI ++ I +L + +E+K+ ++ H+L + + +KA+ EI + Sbjct: 1 MKIRAQKQIIESILINLQPFLEKKDASQITSHILFSSQNDKCIVKATDSEIGLQIVTDHI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ GS T + L DI+R L+D I +N + + S F L +F + +P Sbjct: 61 LIESEGSFTANGKKLLDIIRILKDDEIIMEILDNT----LIVKQKHSKFKLPTFDPNAYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + L S L +++ A+ T ++ LNG +I + L V TD Sbjct: 117 AFPSVDEKPQITLDSLSLIQNLKKISPAIDTNNPKFELNGALINIKHDSTDL--VGTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+A I ++ S+IVP+KA+ EI ++ + + E+ + + E+ Sbjct: 175 RLAIA--SIPGNNSEELSLIVPKKAILEIQKLFLD---QINIYYDETNLIITNENYFFYT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 RLI+G+FP+YQ +IP S + + + ++ ++ +S +K++L SD + Sbjct: 230 RLINGKFPDYQRIIPASVKHSITLPKKEMIDSIKMITTISQE----IKMTLLSDAIIFNS 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ FN +Y+L+ I I +E + + + Sbjct: 286 LSADNVEAKTEIEIGTGLNEKYELSFNSRYILDFISQIDKNEFL-----LEFNEPSLPFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ N ++MP+ Sbjct: 341 VK------------DENFITIIMPI 353 >gi|89098180|ref|ZP_01171065.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] gi|89087037|gb|EAR66153.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] Length = 368 Score = 200 bits (510), Expect = 3e-49, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 155/392 (39%), Gaps = 34/392 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +E+ + + + +++ K++IP+ VL+QA L AS I +P Sbjct: 1 MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60 Query: 59 ---ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ--SF 113 +++ GS V +D+ +KL+ + +V +S + L+ Sbjct: 61 EGAVNIESEGS-AVFTKDCFDVTKKLKGSISFELIDQ-----KVIVSQDKTKTRLEFGVM 114 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 ++P E + N+V +T FA ++ E+R L GI +++ Sbjct: 115 DAEDYPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNF-- 172 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD HRL Q + S+ V K + ++L+ + V V +E I Sbjct: 173 VATDSHRLGKVT---TGQSEETMSVTVHAKKLEQVLKSF-DFSTEVLVFPTELNIAFANG 228 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 RL+DG FP+ +IP ++L +N ++D +S +S V LS++ Sbjct: 229 HTIYYTRLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAISRE--GIVMLSINGL 286 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + + E + +++ F+ KY+L+ + + + + Sbjct: 287 FVELAALGDTAKGSREIAYESFEGESLEVGFSAKYVLDALK-----SIDSSSISIGFNGG 341 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S I+ ++ +++P+R+ Sbjct: 342 MSPFVIQPLSEEITE--------LQLILPVRL 365 >gi|153952198|ref|YP_001397275.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. doylei 269.97] gi|152939644|gb|ABS44385.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp. doylei 269.97] Length = 355 Score = 200 bits (508), Expect = 4e-49, Method: Composition-based stats. Identities = 76/385 (19%), Positives = 173/385 (44%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+++ ++ + + +E+K++ ++ H+ A++ L I+AS EI I I Sbjct: 1 MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + D+++ L + + +N + I + + L F +FP Sbjct: 61 RVESSGFATANAKSITDVIKNLNNEEIVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ ++ T +Y LNG F I + K+ V TD Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + + S +P+KA+ E+ ++ +++ ++ + E+ Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + +K+ Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKNKIIFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++ K+LL+ + +I +++ + NS+ Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVSEPNSAFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + ++MPM Sbjct: 341 VKSQGLS------------MIIMPM 353 >gi|157164122|ref|YP_001465927.1| DNA polymerase III subunit beta [Campylobacter concisus 13826] gi|112801712|gb|EAT99056.1| DNA polymerase III, beta subunit [Campylobacter concisus 13826] Length = 355 Score = 200 bits (508), Expect = 5e-49, Method: Composition-based stats. Identities = 72/365 (19%), Positives = 160/365 (43%), Gaps = 22/365 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+ + ++ + ++ + +E+++ ++ H+ + A DG+L IKA+ EI + + Sbjct: 1 MKVLINKNMLESIVTNTNPYLEKRDLSAITSHIYISAKDGVLNIKATDHEIGLAYKLSNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G T + L DI++ L+D N + I +S + L + +FP Sbjct: 61 KIVDEGYATANGKKLLDIIKSLKDEEVTLETVNN----YLYIKQKNSKYKLPMYKFEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F + + +L +++ + + ++ LNG I + + + V TD Sbjct: 117 EFPTIEGKSKFNIDAIMLGRSLKKILPCIDSNNPKFELNGALLDIKQNYINI--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + + S+I+P+KA+ EI ++ K +++ E+ + ++ Sbjct: 175 RLAV--FKFANEASNEFSLIIPKKAINEIQKLFFDK---IEIYYDENVLIAQSQNFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y+ VIP ++ + + + +S++S +K++ S + + Sbjct: 230 KLINGKFPDYERVIPKDIAIRFELSRDKMVEGIKTISMLSDQ----MKITFSKENITFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 D +A + E + I + L++ + +I D++ F N Sbjct: 286 IIEDNSEAKTMIEFQTGLEEDISINVKNRNLIDFLQSIE-----DEKFEFGFKDKNLPFV 340 Query: 359 IRGKD 363 + K+ Sbjct: 341 VSSKE 345 >gi|310779069|ref|YP_003967402.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] gi|309748392|gb|ADO83054.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] Length = 371 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 85/391 (21%), Positives = 167/391 (42%), Gaps = 28/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59 M I V+R + L+ L + I P+ V L+A DG + ++ + E+ IT + Sbjct: 1 MNIKVDRQEFLKTLRVVEKAIAENKIRPIISCVYLEAQEDGKIVLRGTNLELTITSFMEG 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G S L+ + ++++ D KE + I DS+ E+P Sbjct: 61 EVQEKGKAVFSYQLVEEYLKEITDKEINLVVKEGL----LIIETSDSSSEFSVMEPEEYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 K+ + L ++E+T F +T +N + I ED K+ VATD + Sbjct: 117 RIKDSIEGTGIVFSREKLSEMLEKTKFGASTSIDNLSINCVRIEI--EDKKVKVVATDTY 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238 RL E DI + + +P V +++ L + + +V+ E+++ + + + Sbjct: 175 RLVYLEDDI--EYDGSLKVSIPLTTVDALIKTLRTLDEENVEFKFEENQVFFKVGNSMVL 232 Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDK 294 R+ID FP+Y ++ S++K++ N + + RV I +S + SL + Sbjct: 233 SRVIDLPFPDYNGIMKSVSHNKKISANTEEFSKILKRVQIFVKNNSESKYSAIFSLEAGS 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++ + + K E + V + I N K+LL+ I ++ + D ++ L +SN Sbjct: 293 FYVSGVS-ETAKVNEHIEVEQEGEDVKISLNVKFLLDFIQHLDKN----DRLIIDLLTSN 347 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S++ ++ + Y+ MP+ + Sbjct: 348 SAIQLKNSKDE---------KYLYIAMPLAL 369 >gi|196048109|ref|ZP_03115287.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|196021365|gb|EDX60094.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] Length = 377 Score = 199 bits (507), Expect = 5e-49, Method: Composition-based stats. Identities = 79/399 (19%), Positives = 177/399 (44%), Gaps = 37/399 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ ++ ++ +++ L + + N IP+ + ++A + + + S E I I Sbjct: 1 MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV+ G+I + + DIVRKL +G ++ L +++S +S F L + P Sbjct: 61 DNLSVEKEGAIVIP-KTISDIVRKLPNGEICFKLQKKGL---LDVSTKNSKFSLNTLPSE 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P+ ++ ++++ + + L VE T++ AT++ R L GI I + K+ AT Sbjct: 117 EYPNFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGI--EIKITNKKIAFSAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +GH L+ + + + + IVP K + + ++ ++ ++ + E+ + L Sbjct: 175 NGHLLSQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFNND--TLTLGFEENAVTLFS 232 Query: 233 ESLSMSVRLIDGEFPNYQNV--IPCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAVKL 288 + + +LI+G FP+++ P S + L + +++V I+ S A + Sbjct: 233 STQYIKTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASI 292 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + +L ++ +N G+ + N + + FN YLL + ++S +EV Sbjct: 293 MYENSELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSG-----EEV 347 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G ++ +++P+R+ Sbjct: 348 TLGYIGDIKPIILNGNREEEFK----------LMLPVRL 376 >gi|298529212|ref|ZP_07016615.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans ASO3-1] gi|298510648|gb|EFI34551.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans ASO3-1] Length = 386 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 79/394 (20%), Positives = 171/394 (43%), Gaps = 29/394 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + + D +E + A +I K + + + + I ++ +E TG A Sbjct: 1 MKIIIYKEDFVEGISKASNLIPTKTGAAYLRTIWFKTDMDSVRIMSTDSNVEFTGEYRAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + G I + D++RKL+ G + +E + + +F L S FP Sbjct: 61 IVEEGLIGTPGRKISDLIRKLKSGPITMYS--DEKNDILYVQQEKRHFKLPLSESSWFPE 118 Query: 121 TKEEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + + K+++E++ F ++ ++ + + ++ ++ A +GH Sbjct: 119 LDEFPEENALAGIPGIKFKDILEKSLFCISDDDTMQGMTCLKI-APGDENQVEFCAFNGH 177 Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS- 236 +L++ + +I I++ +K + ++ + + D +++++++S+I Sbjct: 178 QLSLYIHESSGLREILPEKGIMIAKKYLMDLRKWVPESD--IQITITDSKIFFRTLDKKE 235 Query: 237 -MSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 S+ L +FPNY++ I ++K L +L +++R+ I ++ + + L Sbjct: 236 CFSLPLNMHQFPNYRDFINNYSEKLGGPLVTTKNDLMDSLERILIFNTDSQMSTLMRLGQ 295 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 +++ MT D G+A E + Y ++ FN K LLEI+ +I DD VV + Sbjct: 296 EEIYMTSTAVDSGEAEEVVGCSYQGNLKEVVFNTKSLLEILGHID-----DDNVVMKFSG 350 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVL-MPMRI 385 I G++ +YV+ MP++I Sbjct: 351 PIEPCRINGENDQK----------YYVMTMPVQI 374 >gi|461954|sp|P34029|DPO3B_SPICI RecName: Full=DNA polymerase III subunit beta gi|49347|emb|CAA79522.1| DnaN protein [Spiroplasma citri] gi|745457|prf||2016285B DNA polymerase III:SUBUNIT=beta Length = 363 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 83/389 (21%), Positives = 168/389 (43%), Gaps = 33/389 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M + ++R IL+ L RII +K IP +L++ + S + I I Sbjct: 1 MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ GS+ + + +++RK++D E G + I + + L + ++ Sbjct: 61 DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVE---GNLIKIKANNFDSVLNTLNSAD 117 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +P E S+VLK ++ +T FA+ +E R NG+ ++ + +L ATD Sbjct: 118 YPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 RL+ ++D +I+P K + EI R++S D ++ L I +N + Sbjct: 178 SFRLSCKKIDYSNNY--NFDVIIPGKFINEIGRLISENDQVSELLL----IIINCKQ--- 228 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLC 296 ++I+G++P+ VI S + L +N + + ++R S++S+ V L + K+ Sbjct: 229 --KIIEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQKVL 286 Query: 297 MTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +T ++G E + + I FN KY+L+ + + E+ ++ Sbjct: 287 VTSFTQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTK-----EITIKMIDERK 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I D + +++P+R Sbjct: 342 PLIITANDDQTLQQ---------LVLPIR 361 >gi|269120611|ref|YP_003308788.1| DNA polymerase III subunit beta [Sebaldella termitidis ATCC 33386] gi|268614489|gb|ACZ08857.1| DNA polymerase III, beta subunit [Sebaldella termitidis ATCC 33386] Length = 374 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 79/391 (20%), Positives = 164/391 (41%), Gaps = 28/391 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 I V R D L+ L + PV + ++A + + +K + E+ I I V Sbjct: 3 NIKVNRKDFLKGLQIVENAVSENKIRPVISGIFIEARENEIFLKGTDLELSINFKINGEV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G I + L+ + +++++D F + E ++ I G N ++ +P+T Sbjct: 63 KENGKIVIKYKLIEEFLKQIED----EFIELIEESGKIIIKTGKINSEFSTYDPENYPAT 118 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + L +E+ A + +N I F I E LKL V++D +RL Sbjct: 119 PTLELGVEYNFDKQKLLESIEKARIAASLTPENLAVNCIRFEIEENKLKL--VSSDTYRL 176 Query: 182 AVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 E ++ + S+ +P K + +L+I+ + + + + ++++ + + + Sbjct: 177 IYLEEELDEEEKNKESLSVSIPLKTMDGLLKIMKLTSEDKIVLKSDGTKVYFQMGDVEIL 236 Query: 239 VRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRI---QAVKLSLSSDK 294 R+I+ +FP+Y+ ++ DK++ +N + + R I + S +DK Sbjct: 237 TRVIELQFPDYKAILTGAQYDKKILLNTKDFISVLKRTLIFVRDNYEAKNSGIFSFENDK 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + + K E + + + I N K+LL+ I I+ + ++ +S Sbjct: 297 LFLNGIS-ENAKIKEEIPIIKEGEDIKISLNVKFLLDYISTITGEVT-----QLKMLNSK 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SSV I + D + Y+ MP+ + Sbjct: 351 SSVLITEEKND---------KSLYLTMPLAL 372 >gi|319440151|ref|ZP_07989307.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM 44702] Length = 262 Score = 199 bits (507), Expect = 6e-49, Method: Composition-based stats. Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 22/268 (8%) Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 + ++ ++ + A ++ L GI I+ E + L ATD RLAV VD Sbjct: 1 MDPNLFAEVISQVAVAAGRDDTLPMLTGIRMEIDGEHVVL--AATDRFRLAVRTVDWAPA 58 Query: 192 IAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLID 243 A + + +++P + + + R L S V+++L + + + + RLID Sbjct: 59 RADISAELLIPARTLADTARSLDSNGEPVEIALDTDAASGGSRLLGIATDDRRSTTRLID 118 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 +FP ++ ++P N V T L A+ RVS+++ Q ++++ L ++ D Sbjct: 119 ADFPKFRPLLPKQNTALATVEITPLLDAIRRVSLVTEGNSQ-IRMAFEEGGLTISGGGSD 177 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 +G A E + + P+ I FN YL + + I + D VVF + + + Sbjct: 178 IGVAEEQLPCAFVGEPLVIAFNPGYLKDGLGAIHT-----DRVVFGFTQPSRPAILFPEP 232 Query: 364 KDSKNNKDN------KVNAFYVLMPMRI 385 +D + + Y+LMP+R+ Sbjct: 233 EDLPEAGPDGAFPTPETPFTYLLMPVRL 260 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 16/180 (8%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG---PEIEITGAIPASVDVC 64 + E++ R +T+P+ + ++ + + + A+ + PA D+ Sbjct: 4 NLFAEVISQVAVAAGRDDTLPMLTGIRMEIDGEHVVLAATDRFRLAVRTVDWAPARADIS 63 Query: 65 GSITVSAHLLYDIVRKL-QDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESEFP- 119 + + A L D R L +G + + + G+ + D +++FP Sbjct: 64 AELLIPARTLADTARSLDSNGEPVEIALDTDAASGGSRLLGIATDDRRSTTRLIDADFPK 123 Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 ++ + + L + + R I E L + +D Sbjct: 124 FRPLLPKQNTALATVEITPLLDAIRRVSLVTEGNSQ------IRMAFEEGGLTISGGGSD 177 >gi|224418814|ref|ZP_03656820.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT 98-5491] gi|253826662|ref|ZP_04869547.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT 98-5491] gi|313142333|ref|ZP_07804526.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491] gi|253510068|gb|EES88727.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT 98-5491] gi|313131364|gb|EFR48981.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491] Length = 355 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 79/385 (20%), Positives = 169/385 (43%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M I ++ S + + +++K++ ++ H+ L+ + L KA+ E+ + Sbjct: 1 MNIIIQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRENQLICKATDFEMGLCSTTNSL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G TV+ + DI+++L++G + ++I S+F L F EFP Sbjct: 61 TINEQGIATVNGKQILDIIKRLKEGEINLYTNNEN----LHIKQNKSSFKLPMFNAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E E + E+ S L N +++ + T + LNG I E VATD Sbjct: 117 SFPEYETLPKLEINSLELINSMKKIFPVIDTNNQKRELNGALLDIKE--YSYNFVATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA V ++I P+KA+ EI R+ +++ +E I + ++ Sbjct: 175 RLA--MVKFENPSGNNLALIFPKKAITEIQRLFFDH---IELFYNEKNIVIKSQNYVFFS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G+FP+Y+ ++P EL + T + + + ++ +++ VK++ +++ Sbjct: 230 HLINGKFPDYEKILPKEIQTELTIPKTKIIEGIKVINSVTND----VKITFKPNEIFFES 285 Query: 300 DNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++I N +++L+ + I + + + L+ N+ Sbjct: 286 LSQDNSEAQTQIEINLPITEEIEIGINSRHVLDFLSQIETTDFIWG-----LNGKNAPFI 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ N V+MP+ Sbjct: 341 LKS------------GNFSTVVMPI 353 >gi|262066101|ref|ZP_06025713.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291380196|gb|EFE87714.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 381 Score = 199 bits (506), Expect = 6e-49, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 172/400 (43%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + I+ P+ V + D + + + I +I Sbjct: 1 MHIKVNRQNFLTAVRTVEKSIKDNLIKPILSCVYAKVKDNKVYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + A ++ + +++++D + E G + I DS F ++P Sbjct: 61 EVIKEGEVAFRASIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFTTEDYP 117 Query: 120 S----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S E + FE+ S L + E+ F+ T + +N I I + L V+ Sbjct: 118 STFEYINLNENNFKFEMPSQELVEIFEKVLFSADTPDNI-AMNCIR--IESNNKTLNFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234 T+ +RL + D+ +I ++ VP A+ +++I+ D+ +K+ + ++ + Sbjct: 175 TNTYRLTYLKKDVENEIND-FAVSVPADAISSVVKIVKGLDNELIKIYKEGAHLYFKYKE 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS--------SVRIQA 285 ++ +LI+ FPNY +++ + DK+L +N + RV I S S Q Sbjct: 234 TTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMESKYSSTYQF 293 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 KL ++ N D+ + E +N+ + + I N KYLLE I NI ++ E Sbjct: 294 KHSDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIPKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ +NS+V + KDK+ + Y+LMP+ + Sbjct: 349 LILEFMYANSAVKVYEKDKE---------DYIYILMPLAL 379 >gi|325123495|gb|ADY83018.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2] Length = 233 Score = 199 bits (506), Expect = 7e-49, Method: Composition-based stats. Identities = 77/249 (30%), Positives = 141/249 (56%), Gaps = 27/249 (10%) Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 MA +++R+YL G I+E L+ AV TDGHRLA+ E+ + +++ IVPRKAVGE Sbjct: 1 MAVQDVRFYLTGTLLEIDENQLR--AVTTDGHRLALCEITASSTSSQLVQAIVPRKAVGE 58 Query: 208 ILRILSSKDSSVKVSLSESRIHLNIES-----------LSMSVRLIDGEFPNYQNVIPCS 256 + R+LS +D + + + +++ I + + + +LIDG+FP+Y+ VIP Sbjct: 59 LQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRG 118 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 DK + ++ +Q++ RV+I+S+ +++ V L+ + D L + +NP+ +AIE + + Y Sbjct: 119 GDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQ 178 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 P+++ FN +YLL+++ + D+V + +N SV ++ + Sbjct: 179 NIPLEMSFNAQYLLDVLGVLDG-----DDVNMSMTEANQSVLVQDP---------AHPDQ 224 Query: 377 FYVLMPMRI 385 YV+MPMR+ Sbjct: 225 TYVVMPMRV 233 >gi|222823048|ref|YP_002574621.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100] gi|222538269|gb|ACM63370.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100] Length = 355 Score = 198 bits (505), Expect = 8e-49, Method: Composition-based stats. Identities = 83/385 (21%), Positives = 172/385 (44%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MKI+V ++ + + +++K++ ++ H+L + D L I+AS EI I I Sbjct: 1 MKISVNKNTLESAIVLTNSYVDKKDSSNIASHLLFEVVDDKLIIRASDYEIGINYKIKKI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V+ G T +A + DI++ L + I EN + I + + L F +FP Sbjct: 61 KVENSGFATANAKSILDIIKSLNNEDVILETIENF----LFIRQKGTKYKLPMFNYEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E F++ SS L +++ A+ T +Y LNG I + V TD Sbjct: 117 NFPSTEGKDKFDIDSSDLSRSLKKILPAVDTNNPKYSLNGALLDIK--TTHINFVGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLAV + K ++ +P+KA+ E+ +I +++ E+ + ++ Sbjct: 175 RLAV--FTLNKTSEKEFNLCIPKKAILEMQKIFF---EKIEIYYDENMLIAKNDNFEFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+ +FP+Y+ VIP + KE + + A+ ++++++ +KL DKL Sbjct: 230 KLINDKFPDYERVIPKNITKEFIFKTEDFQDALKKINVITEK----MKLIFHKDKLVFEG 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + N + ++C K++ + +++I S+ ++ + + Sbjct: 286 ISLDNMEAKTELEMELNVDEEFNLCIKNKFITDFLNSIESETF-----KLSINEPHMAFL 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + ++ + V+MP+ Sbjct: 341 VSSEELQT------------VIMPV 353 >gi|237739903|ref|ZP_04570384.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] gi|229423511|gb|EEO38558.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] Length = 381 Score = 198 bits (505), Expect = 1e-48, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 171/400 (42%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + I+ P+ V + D + + + I +I Sbjct: 1 MHIKVNRQNFLTAVRIVEKSIKDNKIKPILSCVYAKVKDNKVYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + S ++ + +++++D + E G + I DS F ++P Sbjct: 61 EVIREGEVAFSPSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFTTEDYP 117 Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + E + FE+ S L + E+ F+ T + +N I I + L V+ Sbjct: 118 NTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPDNI-AMNCIR--IESNNKTLNFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234 T+ +RL + D+ +I ++ VP + I++I+ D+ +K+ ++ ++ + Sbjct: 175 TNTYRLTYLKKDVEKEIND-FAVSVPADTISSIVKIVKGLDNELIKIYKEDAHLYFKYKE 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS--------SVRIQA 285 ++ +LI+ FPNY +++ + DK+L +N + RV I S S Q Sbjct: 234 TTIITKLIELRFPNYVDILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMESKYSSTYQF 293 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 KL ++ N D+ + E +N+ + + I N KYLLE I NI ++ E Sbjct: 294 KHGDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIPKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V +NS+V + KD + + Y+LMP+ + Sbjct: 349 LVLEFMYANSAVKVYEKDNE---------DYIYILMPLAL 379 >gi|309804032|ref|ZP_07698113.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 11V1-d] gi|308163800|gb|EFO66066.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV 11V1-d] Length = 274 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 65/286 (22%), Positives = 135/286 (47%), Gaps = 19/286 (6%) Query: 103 HGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162 +S+F + +P E SF ++ K ++ T FA+A +E R LNG+ F Sbjct: 2 SENSDFTINGLDADNYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNF 61 Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 N ++ + A+ATD HRL+ + + A ++++P ++ E+ +I++ D V V Sbjct: 62 DFNPKE--INAIATDSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVI 119 Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV- 281 E+++ I +++ RL++G +P+ + +IP + ++ L ++++RVS+++ Sbjct: 120 PGENQVLFKIANINFYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHES 179 Query: 282 RIQAVK--LSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISS 338 R VK L++ + ++ D+ ++G E + N ++I FN YL + + Sbjct: 180 RNNVVKMYLNVEDQIIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV--- 236 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + D +V + + KD D K ++ P+R Sbjct: 237 --SITDSIVIKFTKPLRPFVVVPKDSDEK--------FIQLITPVR 272 >gi|294783008|ref|ZP_06748332.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294479886|gb|EFG27663.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 381 Score = 198 bits (504), Expect = 1e-48, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 173/400 (43%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + I+ P+ V + D + + + I +I Sbjct: 1 MHIKVNRQNFLTAVRIVEKSIKDNKIKPILSCVYAKVKDNKVYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + S ++ + +++++D + E G + I DS F ++P Sbjct: 61 EVIREGEVAFSPSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFTTEDYP 117 Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + E + FE+ S L + E+ F+ T + +N I I + L V+ Sbjct: 118 NTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPDNI-AMNCIR--IESNNKTLNFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234 T+ +RL + D+ +I ++ +P + I++I+ D+ +K+ ++ ++ + Sbjct: 175 TNTYRLTYLKKDVEKEI-NNFAVSIPADTISSIVKIVKGLDNELIKIYKEDAHLYFKYKE 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 ++ +LI+ FPNY +++ + DK+L +N + RV I S +++ S Sbjct: 234 TTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMESKYSSTYQF 293 Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 KL ++ N D+ + E +N+ + + I N KYLLE I NI ++ E Sbjct: 294 KHGINEESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIPKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V +NS+V + KD + + Y+LMP+ + Sbjct: 349 LVLEFMYANSAVKVYEKDNE---------DYIYILMPLAL 379 >gi|257461145|ref|ZP_05626243.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268] gi|257441519|gb|EEV16664.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268] Length = 359 Score = 198 bits (503), Expect = 1e-48, Method: Composition-based stats. Identities = 84/386 (21%), Positives = 177/386 (45%), Gaps = 33/386 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MK+ + + + E++ + +++K+ ++ H+L+ A DG+ IKA+ EI ++ + Sbjct: 1 MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S++ G T + L +++ L D + + + S + L F +FP Sbjct: 61 SIETEGEATANGGKLLSVIKGLSDDSVTLETV----NGALFVKQKKSKYKLPMFETRDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S E SF++ + +L +++ + ++ T +Y LNG + E L L V TD Sbjct: 117 SFPVVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNL--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 RL+V ++ ++ ++ + I++P+KA+GEI ++ S K +K+ E+ + E+ Sbjct: 175 RLSVYKLITQSKAGELDTKILIPKKAIGEIQKLFSDK---IKIYYDENVLLAVSENFEFF 231 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI+G+FPNY+ VIP ++ + + V ++ M +K+++ D + Sbjct: 232 TKLINGKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMCEE----MKVTIKKDGMIFE 287 Query: 299 VDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 N D +A + + ++LL+ + NI S+ D +SS+++ Sbjct: 288 SINEDNSEAKTEIEATIEINGEIVFGVKNRFLLDFLSNIESEIFELD-----FNSSDTAF 342 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + V+MP+ Sbjct: 343 VLSADGLKT------------VIMPI 356 >gi|44004430|ref|NP_982098.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] gi|229021575|ref|ZP_04178173.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] gi|229027504|ref|ZP_04183734.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|229164606|ref|ZP_04292497.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] gi|42741496|gb|AAS44941.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987] gi|228618841|gb|EEK75776.1| DNA polymerase III, beta subunit [Bacillus cereus R309803] gi|228733808|gb|EEL84572.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272] gi|228739746|gb|EEL90145.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273] Length = 370 Score = 197 bits (501), Expect = 2e-48, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 MK T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 236 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|229035394|ref|ZP_04189299.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] gi|228727940|gb|EEL79011.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271] Length = 375 Score = 197 bits (501), Expect = 3e-48, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 MK T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 6 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 65 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 66 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 122 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 123 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 180 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 181 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 240 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 241 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 297 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 298 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 352 RPIVVVGAEDTTHSN-------LQLILPVRV 375 >gi|257126033|ref|YP_003164147.1| DNA polymerase III subunit beta [Leptotrichia buccalis C-1013-b] gi|257049972|gb|ACV39156.1| DNA polymerase III, beta subunit [Leptotrichia buccalis C-1013-b] Length = 375 Score = 196 bits (499), Expect = 4e-48, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 161/391 (41%), Gaps = 28/391 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 I V R +L+ + + V + ++ D ++ + E+ I I A V Sbjct: 3 HIIVNRKSLLKAITIVENAVSENKIREVLSGIYIETKDEKAILRGTDLELTINTEIEAQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G I + L+ + ++++ D E ++ I +N + FP+ Sbjct: 63 EEDGKIVIKHKLIEEFLKQISDEKITLI----EENGKLIIQSSSTNTEFSLYNAENFPTQ 118 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + L N +E + +T +N I I E+ LKL +++D +RL Sbjct: 119 SPLNTGVEYIFSKQKLLNNIENVKISASTNPENLAVNCIRVEIEEDKLKL--ISSDTYRL 176 Query: 182 AVAEVDIVAQI--AKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 E D+ + S+ VP K + +++I+ + ++ + S++ ++ + Sbjct: 177 TYIEEDLEESQKGKENLSLSVPLKTIDGLVKIMKLIDEENITLKSDGSKVFFQFSNVEIL 236 Query: 239 VRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDK 294 R ID +FP+Y++++ S ++K++ +N + + R SI + + +++K Sbjct: 237 TRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLKRTSIFVRENKESKNGGIFNFANNK 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T + + + E + + I N K+LL+ I I V L ++ Sbjct: 297 LLLTGTS-ENAQIKEEIVTIQEGEDLKISLNVKFLLDYISTIEGKVT-----VLELLNNK 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SSV +R +D D + Y MP+ + Sbjct: 351 SSVIVRDEDND---------KSLYFTMPLAL 372 >gi|330898607|gb|EGH30026.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] Length = 195 Score = 196 bits (499), Expect = 5e-48, Method: Composition-based stats. Identities = 66/209 (31%), Positives = 120/209 (57%), Gaps = 14/209 (6%) Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + Sbjct: 1 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 60 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L Sbjct: 61 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 120 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS Sbjct: 121 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 175 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ D D ++ YV+MPMR+ Sbjct: 176 ALVQESDND---------DSAYVVMPMRL 195 >gi|146344353|ref|YP_001202209.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25] gi|146188165|emb|CAM96496.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25] Length = 369 Score = 196 bits (498), Expect = 5e-48, Method: Composition-based stats. Identities = 97/393 (24%), Positives = 178/393 (45%), Gaps = 32/393 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ SD+ L R+ +RK T V H L+ + L + A + +++ IPA Sbjct: 1 MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59 Query: 61 V---DVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + G ++ V A +V L A +S ++ IS S F L + P Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEP---KLVISAARSRFTLATIPAD 116 Query: 117 EFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 FP + ++ +A S L V + F A ++R LNGI F + + L Sbjct: 117 HFPVMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTL--A 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A DG RL V EV + + M + I+P + ++ + + + SV+VS S S E Sbjct: 175 AADGLRLGVTEVPVTGEP--MQNFILPSSCIEDVCQFVGT--GSVRVSTSGSMARFTREG 230 Query: 235 LSMSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +L++G+FP+Y+ ++ R+ A+ RV ++S + V+L++S++ Sbjct: 231 GVLHTKLVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSAE 290 Query: 294 KLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + A + + YN P++I FN + EI+ ++ + E+ +V+F Sbjct: 291 SISIQSVGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEI---DVIF--SG 345 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + S +R +D S + +VLMP+R+ Sbjct: 346 AASGTLLRARDLPSHS---------FVLMPVRL 369 >gi|262038006|ref|ZP_06011418.1| DNA polymerase III, beta subunit [Leptotrichia goodfellowii F0264] gi|261747959|gb|EEY35386.1| DNA polymerase III, beta subunit [Leptotrichia goodfellowii F0264] Length = 375 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 70/391 (17%), Positives = 162/391 (41%), Gaps = 28/391 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + V+R ++L+ + + V + ++A + + +K + E+ I I + Sbjct: 3 NVKVDRKELLKAIQIVENAVTENKIREVLSGIYIEAKENKIILKGTDLELSINTEISGEI 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G I + L+ + ++++ D + E ++ I +N + FP+ Sbjct: 63 ISEGKIVIKHKLIEEFLKQILD----EKIELIEEQGKLVIKTDSTNTEFSLYDAENFPTQ 118 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E + + L + +E + + + +N I F I E LKL V++D +RL Sbjct: 119 SKMELGLEYTFNKNKLLSYIENVKISASADPENLAVNCIRFEIEENKLKL--VSSDTYRL 176 Query: 182 AVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 E ++ S+ +P K + +++I+ + ++ +++ ++ + Sbjct: 177 TYIEEELEENEKNKEGLSVSIPLKTIEGLIKIMRLIDEENIIFKSDGTKVFFKFSNVEIL 236 Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDK 294 R+I+ +FP+Y++++ +DK++ +N + + R I S ++K Sbjct: 237 TRVIELQFPDYKSILKNAQHDKKVLLNTKDFLSVLKRTLIFVRDNKDAKNGGIFSFENNK 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T N + K E + + I N K+LL+ I + +L +S Sbjct: 297 LVLTGIN-ENAKIKEELATIQEGEDLKISLNVKFLLDYISILDGKVTE-----LKLMNSK 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SSV ++ ++ D+ + Y MP+ + Sbjct: 351 SSVLVKDEESDA---------SLYFTMPLAL 372 >gi|319654119|ref|ZP_08008209.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] gi|317394204|gb|EFV74952.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2] Length = 369 Score = 196 bits (498), Expect = 6e-48, Method: Composition-based stats. Identities = 73/383 (19%), Positives = 160/383 (41%), Gaps = 25/383 (6%) Query: 6 ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--ASVDV 63 E +++LLG A K + +++ A + I+A+ I + + Sbjct: 8 ETKALIDLLGKASAAASNKP-DSIRSGIMIVAKKNEITIRAANETISVQLNAKDITEANE 66 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 V A L D+++KL G + ++ V I G S++ + + EFP Sbjct: 67 DLIFVVPAKLFLDMMKKLPKGEVVIIVEDKN----VIILVGKSSYGISTLAIDEFPKPVA 122 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 E F++ + A + E R L G+ HI L +ATD HRL Sbjct: 123 YEEGKIFQVEGPEFAQSLSAMIHACSDSETRPILTGV--HIVSNGKYLTLIATDSHRLMA 180 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 V I+ + + +++VP+ ++ E+ +L+ + V+ S+S++++ L + + + RL++ Sbjct: 181 TAVPILKETEEFKNVVVPKTSIKELTTLLTD-EKEVEFSISDNQLSLKTDGVLFTTRLLE 239 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL-CMTVD-N 301 G FP+ +IP + + E+ V+ +A+DR + + L ++ Sbjct: 240 GSFPDVTKLIPTTYESEVVVHREEFLKALDRTKTALGKSGKVALFHVMEGTLPTFNIECK 299 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 ++ E + + + I + +L + + +I+S + V ++ + + IR Sbjct: 300 TEITNVFEELFIDEAGASISIKLDVYFLTDCLQSINSQK-----VRLQIAGTMKPMLIRP 354 Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384 + + + +++P+R Sbjct: 355 EIQGATQFG--------LVLPVR 369 >gi|228970059|ref|ZP_04130767.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] gi|228789679|gb|EEM37553.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar sotto str. T04001] Length = 370 Score = 195 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 176 TDAHRLARLHFDCTKVTIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 236 IIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|330959579|gb|EGH59839.1| putative DNA polymerase subunit [Pseudomonas syringae pv. maculicola str. ES4326] Length = 369 Score = 195 bits (497), Expect = 7e-48, Method: Composition-based stats. Identities = 94/393 (23%), Positives = 173/393 (44%), Gaps = 32/393 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++ SD+ L R+ +RK T V H L++ + L + A + +++ +IPA Sbjct: 1 MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIKVDATGLVLSAHNGQKQMSLSIPAD 59 Query: 61 V---DVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + G ++ V A ++ L A +S ++ IS S F L + P Sbjct: 60 LFTLQGDGFAVCVPAVKFDQVISALAKEAMVSIQFAEP---KLVISAARSRFTLATIPAD 116 Query: 117 EFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 FP + ++ +A L V + F A ++R LNGI F + L L Sbjct: 117 HFPVMEFTADQSKGELNIAGITLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLLTL--A 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG RL V +V + + M I+P + ++ + + + +V+V+ S S E Sbjct: 175 ATDGLRLGVIDVPVSGEP--MQDFILPSSCIEDVCQFVGT--GNVQVATSGSMARFTREG 230 Query: 235 LSMSVRLIDGEFPNYQN-VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 + +L++G+FP+Y+ VI R+ + A+ RV +MS + V+L++S+D Sbjct: 231 GVLHTKLVEGKFPDYRKLVIAAERGDVARIVRDDFAGAMARVGLMSEGAVSLVRLAVSAD 290 Query: 294 KLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + A + + Y+ ++I FN EI+ ++ + E+ Sbjct: 291 SISIHSVGGHAEDVADDVLACDYHAESLEIGFNGSLAGEIVRSLGATEID-----LIFSG 345 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R +D S + +VLMP+R+ Sbjct: 346 PASGTLLRARDLPSHS---------FVLMPVRL 369 >gi|260889707|ref|ZP_05900970.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254] gi|260860313|gb|EEX74813.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254] Length = 375 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 162/391 (41%), Gaps = 28/391 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 I V+R +L+ + + V + ++ N+G ++ + E+ I I A V Sbjct: 3 HIIVDRKSLLKAITIVENAVTENKIREVLSGIYIETNEGKAILRGTDLELSINTEIEAQV 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G I + L+ + ++++ D E ++ I +N + FP Sbjct: 63 EDEGKIVIKHKLIEEFLKQISDEKITLI----EENGKLVIQASSTNTEFSLYDAGNFPVQ 118 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + E + L N +E + + +N I I E+ LKL V++D +RL Sbjct: 119 SKLENGVEYVFEKEKLLNNIENVKISASPNPENLAVNCIRLEIEEDKLKL--VSSDTYRL 176 Query: 182 AVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238 E D+ Q + S+ +P K + +++I+ + ++ V S++ ++ + Sbjct: 177 TYIEEDLDETQQGKENLSLSIPLKTIDGLIKIMKLIDEENITVKSDGSKVFFQFSNVEIL 236 Query: 239 VRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDK 294 R ID +FP+Y++++ S ++K++ +N + + R +I + +++K Sbjct: 237 TRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLRRTAIFVRDNKEAKNGGIFNFANNK 296 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L +T + + + E + + I N ++LL+ I I V L ++ Sbjct: 297 LLLTGTS-ENAQIKEEIVTIQEGADLKISLNVRFLLDYISTIEGKVT-----VLELLNNK 350 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SV +R +D D + Y MP+ + Sbjct: 351 GSVIVRDEDND---------KSLYFTMPLAL 372 >gi|221642091|ref|YP_002533178.1| DNA polymerase III, beta subunit [Bacillus cereus Q1] gi|229113013|ref|ZP_04242513.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] gi|221243026|gb|ACM15735.1| DNA polymerase III, beta subunit [Bacillus cereus Q1] gi|228670406|gb|EEL25749.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] Length = 370 Score = 195 bits (497), Expect = 8e-48, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 236 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|190014973|ref|YP_001966586.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|190015240|ref|YP_001966912.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|218848497|ref|YP_002454937.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] gi|116584649|gb|ABK00764.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|116584921|gb|ABK01030.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|218540548|gb|ACK92944.1| DNA polymerase III, beta subunit [Bacillus cereus AH820] Length = 370 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 236 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|242310228|ref|ZP_04809383.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489] gi|239523525|gb|EEQ63391.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489] Length = 355 Score = 195 bits (496), Expect = 9e-48, Method: Composition-based stats. Identities = 80/385 (20%), Positives = 171/385 (44%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M IT++ S + + +++K++ ++ H+ L+ D L KA+ E+ + Sbjct: 1 MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G TV+ + DI+++L++G + ++I S+F L F EFP Sbjct: 61 TINEQGIATVNGKQILDIIKRLKEGEVNLYTNNEN----LHIKQNKSSFKLPMFNAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E E + E+ S L + +++ + + LNG I E VATD Sbjct: 117 TFPEYETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKE--YSYNFVATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA V ++I P+KA+ EI R+ ++++ +E I + ++ Sbjct: 175 RLA--MVKFDNASGNNLALIFPKKAITEIQRLFFD---NIELFYNERNIIIKSQNYIFFS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G+FP+Y+ ++P EL + +++ + + ++ +++ VKL+ +++ Sbjct: 230 HLINGKFPDYEKILPKEIQTELVLQKSSIIEGIKVINSVTND----VKLTFRPNEILFES 285 Query: 300 DNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++I N +++L+ + I S E + L+ N+ Sbjct: 286 LSQDNSEAQTQIEINLPITEEIEIGINSRHVLDFLSQIDSVEFIWG-----LNGKNAPFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ N V+MP+ Sbjct: 341 LK------------NGNFSTVVMPI 353 >gi|190015717|ref|YP_001967211.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|208702194|ref|YP_002267438.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217956718|ref|YP_002335812.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|229142295|ref|ZP_04270815.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] gi|116584624|gb|ABK00741.1| DNA polymerase III, beta subunit [Bacillus cereus] gi|208658049|gb|ACI30419.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97] gi|217068406|gb|ACJ82654.1| DNA polymerase III, beta subunit [Bacillus cereus AH187] gi|228641146|gb|EEK97457.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26] Length = 370 Score = 195 bits (496), Expect = 1e-47, Method: Composition-based stats. Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 1 MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 236 IIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|257452078|ref|ZP_05617377.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R] gi|257466123|ref|ZP_05630434.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315917280|ref|ZP_07913520.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC 25563] gi|317058627|ref|ZP_07923112.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R] gi|313684303|gb|EFS21138.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R] gi|313691155|gb|EFS27990.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC 25563] Length = 373 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 82/394 (20%), Positives = 164/394 (41%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ V R++ L+ L + I P+ V ++ +L + + E IT + Sbjct: 1 MQVIVNRTEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + L+ + +++L++ G + + GD+ +F ++P Sbjct: 61 QVIEEGKVAFQYPLIDEYMKELKEEEVQIRMA----GDSLMVEGGDAVSEFSTFSSEDYP 116 Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + ++E + S L ++ ++ F+ + ++ + I D ++ V Sbjct: 117 KAFENFMQQEKEVLLRMNSIELASIFDKLKFSAGNTD-NPAIHCVR--IEGRDGEIHFVT 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RL + + + + + +P +AV +I ++ VK+ + H IE + Sbjct: 174 TDTYRLTYLHKEFL--LPEDFQMSLPLEAVEACSKIFRGLEADVKLYFDKKFAHFEIEDI 231 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLS 291 + LI+ FP YQ ++ + DK + ++ NL + RV I + LS Sbjct: 232 HIMSSLIELNFPAYQAILSNGNYDKTMGISTENLLSILRRVIIFVRNNEESKYGATFHLS 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + N D+ K E M V Y P+ + N KYL + + N+ D E+ + Sbjct: 292 DGLLKIK-GNSDIAKINEEMIVDYQGAPLKVSLNTKYLFDFVQNLEKDT----ELSVEML 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS +SV + K K+ + Y+LMP+ + Sbjct: 347 SSKTSVKVHEKGKE---------DYIYILMPLAL 371 >gi|228912517|ref|ZP_04076182.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] gi|228847087|gb|EEM92076.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] Length = 370 Score = 195 bits (495), Expect = 1e-47, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 157/392 (40%), Gaps = 29/392 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M + R+ +E L A ++ K+ +P VLL+ N + + S + + Sbjct: 1 MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + NEL + + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHTNNELKI---VENTKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E + + RT A+A + R L G+ E + L A Sbjct: 118 EEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGLNLKSMEGE--LSCTA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RLA + K +I+P K++ L++ + + +S++++ + ES Sbjct: 176 TDSYRLARLRFERTHIPATKDGEVILPSKSLKTALKLFNRESKLEMKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ +IP +D + V + L+ ++++S SS V + K Sbjct: 236 IIYQSRLLAGVYPDTSRMIPVYSDIYVTVERSELQNTLEQLSAFSS----LVMFTSEGKK 291 Query: 295 -LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + N +G A + E N +YLL+ + I S + + ++ ++ Sbjct: 292 SLRIEPKNSQVGTASVEIPCD-QEETFTFACNVEYLLQALQTIPS-----EAITIKIINN 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G D + +N+ +++P+R+ Sbjct: 346 QRPIVIVGADDKTNSNQQ-------LILPVRV 370 >gi|196048286|ref|ZP_03115463.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] gi|196021023|gb|EDX59753.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108] Length = 370 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 76/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 MK T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E L+ ++ T A+ + R L G+ ++ K ++A Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD HRLA D IAK +++P K++ L++ + + + +S++++ + ES Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ ++P E++++ + ++++S SS+ V S + Sbjct: 236 IIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 + + N +G A + + N +YLL+ + I+S + + ++ S+ Sbjct: 293 IHLKPQNSQVGTASVEILCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + G + + +N +++P+R+ Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370 >gi|237753473|ref|ZP_04583953.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC BAA-430] gi|229375740|gb|EEO25831.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC BAA-430] Length = 355 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 170/385 (44%), Gaps = 34/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M IT+ S + + +++K++ ++ H+ L+ + L KA+ E+ + Sbjct: 1 MNITISNSVLDNIFTSLQPFLDKKDSSQITSHIYLETRNNQLIAKATDFEMGLCAITDSV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G TV+ + DI+++L++G + ++I S+F L F EFP Sbjct: 61 NILEEGIATVNGKQILDIIKRLKEGDINLYTNNEN----LHIKQNKSSFKLPMFNAQEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E E + E+ S L +++ + + LNG I E VATD Sbjct: 117 TFPEFENLPKLEINSLELITSMKKIFPVIDMNNQKRELNGALLDIKE--YSYNFVATDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA+ + K S+I PR+A+ EI R+ ++++ +E + + ++ Sbjct: 175 RLAI--IKFDKPSGKNLSLIFPRRAITEIQRLFFD---NIELFYNEKNVIIKSQNYIFFS 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 LI+G+FP+Y+ ++P EL + TN+ + + ++ +++ VK++ + ++ Sbjct: 230 HLINGKFPDYEKILPKEMQTELNIPKTNIIEGIKVINSVTND----VKITFKAQEILFES 285 Query: 300 DNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + + ++I N +++L+ + I + + L+ N+ Sbjct: 286 LSQDNSEAKTQIEIELPINEEIEIGINSRHILDFLTQIDTATF-----TWALNGKNAPFV 340 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ + N V+MP+ Sbjct: 341 LKSE------------NFSTVVMPI 353 >gi|228918927|ref|ZP_04082312.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] gi|228840729|gb|EEM85986.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar pulsiensis BGSC 4CC1] Length = 370 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 79/392 (20%), Positives = 157/392 (40%), Gaps = 29/392 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 MK T+ R+ +E L A ++ KN +P V L N + + S + + Sbjct: 1 MKFTINRTLFIEKLEKASATVDVKNPMPALQGVFLDCNQQGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + K NEL + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESMKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E + + RT A+A + R L G ++ +L A Sbjct: 118 EEYPEIKIESGKDWLTMTQEQFAEIASRTLHAIAIADTRKVLTG--LNLKSMKGELSCTA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RLA + AK +I+P K++ L++ + + +S++++ + ES Sbjct: 176 TDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFNREPKLEMKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ +IP +D + V + L+ ++++S S+ V + K Sbjct: 236 IIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFST----LVMFTSEGQK 291 Query: 295 -LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + N +G A + E N +YLL+ + I S + + ++ S+ Sbjct: 292 SLRIEPKNSQVGTASVEIPCD-QEETFTFACNVEYLLQALQTIQS-----EAITIKIISN 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G + + +N +++P+R+ Sbjct: 346 QRPIVIVGANDKTNSN-------LQLILPVRV 370 >gi|330902070|gb|EGH33365.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica str. M301072PT] Length = 181 Score = 194 bits (494), Expect = 2e-47, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVA 184 RLA+ Sbjct: 176 RLAMC 180 >gi|257463051|ref|ZP_05627453.1| DNA polymerase III, beta chain [Fusobacterium sp. D12] gi|317060655|ref|ZP_07925140.1| DNA polymerase subunit III [Fusobacterium sp. D12] gi|313686331|gb|EFS23166.1| DNA polymerase subunit III [Fusobacterium sp. D12] Length = 373 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 81/394 (20%), Positives = 162/394 (41%), Gaps = 32/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ V R++ L+ L + I P+ V ++ +L + + E IT + Sbjct: 1 MQVIVNRNEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + L+ + +++L++ G + + GD+ +FP ++P Sbjct: 61 EVVKEGKVAFQYPLIDEYMKELKEEEIQIRMD----GEALMVEGGDAVSEFSTFPYEDYP 116 Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + +++E + S L + ++ F+ + + ++ + D ++ V Sbjct: 117 KAFENFEKQEEEVLLRMNSIELATIFDKLKFSAGSTD-NPAIHCVRVE--GRDGEIHFVT 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RL Q + + +P + V +I ++ VKV + H IE + Sbjct: 174 TDTYRLTYLHKSFSLQ--EDFQMSLPLETVEACSKIFRGLEAEVKVYFDKKFAHFLIEDI 231 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLS 291 + LI+ FP YQ ++ + DK + ++ +L + RV I + L+ Sbjct: 232 HIVSSLIELTFPAYQTILSNGNYDKIMGISTESLISILRRVIIFVRNNEESKYGATFHLA 291 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 L + N D+ K E M V Y P+ + N KYL + + N+ D E+ + Sbjct: 292 DGVLKIK-GNSDIAKINEEMAVDYQGAPLKVSLNTKYLFDFVQNLEKDT----ELSLEML 346 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS +SV + K K+ + Y+LMP+ + Sbjct: 347 SSKTSVKVHEKGKE---------DYIYILMPLAL 371 >gi|3953450|gb|AAC83392.1| DnaN [Mycobacterium avium] Length = 258 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 16/253 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL D L I E+ + A + Sbjct: 14 KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 73 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + + G +V ++ G + F L + ++P+ Sbjct: 74 ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNQVALNCGSARFSLPTMAVEDYPTL 129 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + L + + + + A ++ L GI I+ + + L ATD RL Sbjct: 130 PTLPEE-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186 Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRI-------HLNIE 233 AV E+ A + +++VP K + E R S V+ +++ ++ Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRCRWGRAQVCGKDGLLGISGN 245 Query: 234 SLSMSVRLIDGEF 246 + RL+D EF Sbjct: 246 GKRSTTRLLDAEF 258 >gi|330937299|gb|EGH41307.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 183 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I ++ +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDGH Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175 Query: 180 RLAVA 184 RLA+ Sbjct: 176 RLAMC 180 >gi|326943605|gb|AEA19498.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar chinensis CT-43] Length = 370 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 77/392 (19%), Positives = 157/392 (40%), Gaps = 29/392 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M + R+ +E L A ++ K+ +P VLL+ N + + S + + Sbjct: 1 MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTETVTLVTRFN 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + G + +A + ++K + NEL + + F + Sbjct: 61 VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHTNNELKI---VENTKKQFSFCTMDH 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 E+P K E + + RT A+A + R L G+ E + L A Sbjct: 118 EEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGLNLKSMEGE--LSCTA 175 Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD +RLA + AK +I+P K++ L++ + + +S++++ + ES Sbjct: 176 TDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFNRESKLEMKLISDTQLLIRGES 235 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + RL+ G +P+ +IP +D + V + L+ ++++S S+ V + K Sbjct: 236 IIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFST----LVMFTSEGTK 291 Query: 295 -LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 L + N +G A + E N +YLL+ + I S + + ++ ++ Sbjct: 292 SLRIEPKNSQVGTASVEIPCD-QEETFTFACNVEYLLQALQTIPS-----EAITIKIINN 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I G D + +N +++P+R+ Sbjct: 346 QRPIVIVGADDKTNSN-------LQLILPVRV 370 >gi|322379378|ref|ZP_08053749.1| DNA polymerase III subunit beta [Helicobacter suis HS1] gi|322380445|ref|ZP_08054646.1| DNA polymerase III subunit beta [Helicobacter suis HS5] gi|321147127|gb|EFX41826.1| DNA polymerase III subunit beta [Helicobacter suis HS5] gi|321148196|gb|EFX42725.1| DNA polymerase III subunit beta [Helicobacter suis HS1] Length = 363 Score = 194 bits (493), Expect = 2e-47, Method: Composition-based stats. Identities = 79/390 (20%), Positives = 166/390 (42%), Gaps = 36/390 (9%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + +E++ + E L + +RK+ ++ H+ L+A LL ++A+ E+ + + AS+ Sbjct: 4 HLMIEKTRLEEALKNLIAFTDRKDLTNITSHICLEAKGDLLRLEANDLEMGLCLNLNASI 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G T +A DI KL+ G KEN V+IS S F L F +++FP+ Sbjct: 64 LEEGGATFNAKHFLDIASKLEQGELTLQTKEN----YVHISFKRSKFKLPLFDKADFPTF 119 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + + + L ++ ++T +Y G+ + +L VATD RL Sbjct: 120 PSFEDLPFVHFSDTTLGEYFKKLTHVISTNASKYEFGGVLLVFKD---RLELVATDTRRL 176 Query: 182 AVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE-SRIHLNIESLSMS 238 A+ ++D I+P++A+ EI ++ S + + + S + S+ + Sbjct: 177 ALVQMDPDNMPTTKTTQEFILPKRAMLEISKLFESDFDMLYETHDQPSMLFFKNASMVLY 236 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 +LI G++PNYQ +IP +L ++ ++A+ + +SS K+ + Sbjct: 237 SKLISGKYPNYQAIIPSEFTHQLELDTQKFKEAIQITNALSSTT----KICFYPGYIEFE 292 Query: 299 V---DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 +NP A S+ + + +++L+ ++ + + L+ + Sbjct: 293 SLQDENPSF--ASTSIEAQTTLEGFTLHVHARHVLDALNALHTPTF-----TLLLNENTR 345 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + + ++MP+ I Sbjct: 346 PFLVQNEGFKT------------LIMPVMI 363 >gi|237745013|ref|ZP_04575494.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] gi|229432242|gb|EEO42454.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] Length = 381 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 93/400 (23%), Positives = 172/400 (43%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + D + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDNKIYFTGTNLDTTIKTSIDVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I S ++ + +++++D + E G + I DS ++P Sbjct: 61 EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L V+ Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I+ S+ VP + I++I+ D+ V KV E+ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDISD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS---SVRIQAVKLSL 290 + +LI+ FPNY ++ S DK+L +N L + R+ I S S + Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 SSDK-----LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 ++ + ++ N ++ + E ++V + + I N KYLLE I NIS ++ E Sbjct: 294 KHNEKNKGIMTISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + KD D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|213028016|ref|ZP_03342463.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 201 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 72/207 (34%), Positives = 121/207 (58%), Gaps = 6/207 (2%) Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 R L +GA+I+ E G + + G S F L + P ++FP+ + + F L + +K Sbjct: 1 RGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMK 57 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV + + A + S+ Sbjct: 58 RLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSV 114 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 IVPRK V E++R+L ++ ++V + + I ++ + +L+DG FP+Y+ V+P + D Sbjct: 115 IVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 174 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQA 285 K L C L+QA R +I+S+ + + Sbjct: 175 KHLEAGCDILKQAFARAAILSNEKFRG 201 >gi|119953226|ref|YP_945435.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135] gi|119861997|gb|AAX17765.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135] Length = 386 Score = 193 bits (491), Expect = 4e-47, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 36/399 (9%) Query: 2 KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 K + I + A II +N + +LL+ + L+IKA+ I IP Sbjct: 4 KFILCDTEQISNEIDKAKSIILNRNINDIWSAILLEVKNSNLKIKATDRNIFFESTIPIV 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF---FKENELGTEVNISHGDSNFYLQSFPESE 117 + ++A D V+ L ++ E++L + + NF E Sbjct: 64 SAENFKVLINASNFSDAVKALNLYNELKIKFIEDESKLSIIGESENKNDNFINDHLSEPT 123 Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 F EE Y + EL K ++ + F+ + +E + LNGI+F +++ Sbjct: 124 FSSEEIEIYNYDINEEIYNLTVELTQREFKKIINKVSFSASHDESKNVLNGIYF-TKDKN 182 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L V+T+ HRL+V + D++ + + IVP K V +LR + + +K+ +S+ + Sbjct: 183 SALTFVSTNSHRLSVYKTDLI--FEEDINFIVPVKMVN-LLRQMMVGEGIIKLKISDKKF 239 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ + + LI+G +P+Y+++IP + ++ + L+ + RVS + R + V L Sbjct: 240 YVEFNNYKIVCSLINGNYPDYESIIPNEQQNKALIDVSILKDRLSRVSSYTDKRSKKVIL 299 Query: 289 SLSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + + ++L + ++P G+ E S N Y + N Y E + + + Sbjct: 300 NFAGNQLRLMAEDPITGRKGEFFVQSPNYDYEGSEEVVAINSAYFTEAMGVFDTSK---- 355 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S + K + +++MPM Sbjct: 356 ---LEIKFSGGGIL--------KLSDPANFGFIHLIMPM 383 >gi|227494190|ref|ZP_03924506.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] gi|226831924|gb|EEH64307.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436] Length = 269 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 58/279 (20%), Positives = 125/279 (44%), Gaps = 20/279 (7%) Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 ++P+ V ++ + + + + A AT+E L GI I ++ + L Sbjct: 1 MNVEDYPTLPAVPEVKG-KIDAQLFAQTITQVSVAAATDETIPLLTGIRMEIEDDTITL- 58 Query: 173 AVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS------E 225 +ATD +RLA+ + S++V K + ++ + ++S SV+++ S + Sbjct: 59 -LATDRYRLAMRTFKWEPAEPGISTSMLVKAKTLNDVAKSMTSA-GSVEIAFSTTETTGQ 116 Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 S I + + L+DGE+P + + P + VN L +AV RVS+++ + + Sbjct: 117 SLIGFRAGTRHTTSTLMDGEYPPVRRLFPETTATTALVNRNELLEAVKRVSLVAEQKT-S 175 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 V+L S+ ++ + D +A E+++ + FN +YL + +++ Sbjct: 176 VRLGFSAGQVVLEAGQDDNAQANETIHAQLQGEDIRTAFNPQYLQAGLSALNTQ-----F 230 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V F + + G+++ ++ + Y+LMP+R Sbjct: 231 VRFSFTDAAKPAVLTGQNEP---LAEDDLAFRYLLMPIR 266 Score = 52.5 bits (125), Expect = 1e-04, Method: Composition-based stats. Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 5/149 (3%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGA--IPAS 60 ++ + + TIP+ + ++ D + + A+ + + PA Sbjct: 18 KIDAQLFAQTITQVSVAAATDETIPLLTGIRMEIEDDTITLLATDRYRLAMRTFKWEPAE 77 Query: 61 VDVCGSITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + S+ V A L D+ + + +I+F G + + + + E+ Sbjct: 78 PGISTSMLVKAKTLNDVAKSMTSAGSVEIAFSTTETTGQSLIGFRAGTRHTTSTLMDGEY 137 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFA 147 P + + A L+E Sbjct: 138 PPVRRLFPETTATTALVNRNELLEAVKRV 166 >gi|260494790|ref|ZP_05814920.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] gi|260197952|gb|EEW95469.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] Length = 381 Score = 193 bits (490), Expect = 5e-47, Method: Composition-based stats. Identities = 92/400 (23%), Positives = 171/400 (42%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + D + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDNKIYFTGTNLDTTIKTSIDVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I S ++ + +++++D + E G + I DS ++P Sbjct: 61 EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L V+ Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I S+ VP + I++I+ D+ V KV E+ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 + +LI+ FPNY ++ S DK+L +N L + R+ I S ++ S Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + ++ N ++ + E ++V + + I N KYLLE I NIS ++ E Sbjct: 294 KHNEENKGTMTISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + K+ D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKNNDE---------YIYILMPLAL 379 >gi|330719908|gb|EGG98380.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047] Length = 198 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 6/195 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M+ + R D+++ L ++ER+ T+PV ++L+ DG L + + E+E+ G + Sbjct: 1 MRFAISREDLIKPLTLVAGVVERRQTLPVLSNILIVVEDGQLSLTGTDLEVELVGRVTLT 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G +TV A L DI + L D AQI+ E++ ++ + G S F L + P ++FP Sbjct: 61 EPAEAGEVTVPARKLMDICKTLPDDAQITLQLEDD---KMILKSGRSRFSLTTLPATDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S +E F + S LK L++RT AMA +++RYYLNG+ F I + KL AVATDGH Sbjct: 118 SVEESPQNLDFVVQQSELKRLIDRTSIAMAQQDVRYYLNGMLFEIQ--NAKLRAVATDGH 175 Query: 180 RLAVAEVDIVAQIAK 194 RLA++E + Sbjct: 176 RLAMSEAAADIATDE 190 >gi|88697474|gb|ABD48431.1| DnaN [Morganella morganii] gi|88697480|gb|ABD48434.1| DnaN [Morganella morganii] gi|88697482|gb|ABD48435.1| DnaN [Morganella morganii] gi|88697484|gb|ABD48436.1| DnaN [Morganella morganii] gi|88697486|gb|ABD48437.1| DnaN [Morganella morganii subsp. morganii] gi|88697508|gb|ABD48448.1| DnaN [Morganella morganii] Length = 193 Score = 193 bits (490), Expect = 6e-47, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 7/199 (3%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ A+P G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 DGAQIS + G + + G S F L + P S+FP+ + + +F L + LK L+E Sbjct: 61 DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIE 117 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI ++ S+IVPR Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPD-HSVIVPR 174 Query: 203 KAVGEILRILSSKDSSVKV 221 K V E++R+L D+ +K+ Sbjct: 175 KGVIELMRLLDGGDALLKL 193 >gi|251771681|gb|EES52256.1| DNA polymerase III, beta subunit [Leptospirillum ferrodiazotrophum] Length = 391 Score = 192 bits (489), Expect = 7e-47, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 161/399 (40%), Gaps = 28/399 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSC-HVLLQANDGLLEIKASGPEIEITGAIPA 59 M +E+S LE L ++ + I + H+LL+A + L + + +PA Sbjct: 1 MDFLIEQSVFLEGLEKVS-VLSDRKNIALLSSHILLEAGEDGLTLLSFDQSAGGRLRVPA 59 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G TV ++ IVR+L G F +E + + F+L+ +F Sbjct: 60 KVTTPGQATVLGKKIFQIVRELAPGMIHVFREEGGRKGMTTVEKDSAVFHLKGIDPRDFA 119 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH---INEEDLKLCAVAT 176 S E YSF + L+ L+E+T + EE Y +NG+ F + L V T Sbjct: 120 SFPEITPEYSFGVPIRDLQRLIEKTLPFVVEEEGTY-MNGVLFQRERTSGGKAALNVVGT 178 Query: 177 DGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSES 226 DG+ L ++ + + ++ R+ +++R+L + +V++S++ Sbjct: 179 DGNGLHHGQIPLGEEGGIDLSEQGEKRFLIKRRHAADLMRMLETDSKDEKLTVEISVNPR 238 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 VRL+D FPNY++V P + + + + R ++S + + Sbjct: 239 YAQFRWLGFYFFVRLLDLRFPNYRDVFPEEHSVTVDMGREAATSIIRRAGLIS-EKNVEL 297 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 +L+ + MT N D+G + E P F+ + L +++ + + V Sbjct: 298 ELTWDERAVTMTSQNIDIGDSREQTPAIVTGPPSGFFFSIQSLSKLLGVVGGTTLRMQAV 357 Query: 347 VFR--LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + L+ S V + + + YV+MP+ Sbjct: 358 ILDDPLEHSKVPVV---------WSSVEEPQSRYVIMPL 387 >gi|195953462|ref|YP_002121752.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1] gi|195933074|gb|ACG57774.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1] Length = 398 Score = 192 bits (488), Expect = 8e-47, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 166/399 (41%), Gaps = 31/399 (7%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPAS 60 + ++ + +++ A E K+ +P+ + L++ + +KA+ E I+I G P Sbjct: 10 VVFDKKEFDDIISKAKNTTESKSILPILSNFLIEIENSKYFVKATDLENYIKIEGR-PEQ 68 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118 +V ++ +++ L DIV+ L + + V I G S F L SEF Sbjct: 69 SEVSCTLCINSKKLSDIVKSLSSATFTLTLVNDPSAQSSYVQIQSGRSKFKLTLAEASEF 128 Query: 119 PSTKEEEYV-YSFELASSVLKNLVERTHFAMATEEIR-YYLNGIFFHINEEDLKLC--AV 174 P+ E E S + +L +ERT +A+A E+ L G+ + D K Sbjct: 129 PAFPEIENDMISNNIPGFMLLEGLERTDYAVAKEDAMNPTLTGVNMIFDNNDGKSFVEFA 188 Query: 175 ATDGHRLAVAEVDIVAQIAKM------PSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 ATDG+RL V + + S +PRK V IL+ +++K S V + Sbjct: 189 ATDGNRLTVFKKYYPKDESNENITLSNMSFTIPRKTVK-ILKSITNKASFVNIYYKSGSS 247 Query: 229 HLNIESL----SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRI 283 L E ++ RL++GEFP+Y+ I ++ +LR + R+S + + Sbjct: 248 FLIFEDKAMGCTLFSRLLEGEFPDYKTYIENIDRPLNAKIQRKDLRDLIRRLSFSADGTV 307 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 +KL+ + + L + + + + +++ Y + N +YL E S D Sbjct: 308 IPIKLTFADNILIGETSDRESTEGRDEIDIDYVGEAFSVDLNARYLKE-----SVDYAPC 362 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 D + D + + + N ++ ++MP Sbjct: 363 DYINISTDDPMNGMLV-----SCGNLEEEGFYYASLIMP 396 >gi|118475405|ref|YP_891212.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. fetus 82-40] gi|118414631|gb|ABK83051.1| DNA polymerase III, beta subunit [Campylobacter fetus subsp. fetus 82-40] Length = 356 Score = 192 bits (488), Expect = 9e-47, Method: Composition-based stats. Identities = 81/387 (20%), Positives = 174/387 (44%), Gaps = 33/387 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK+ ++++ + ++ + +++K+ ++ H+ L A DG+L IKA+ EI + + A Sbjct: 1 MKVLIKKNVLESIVINTNPYLDKKDLSSITSHIFLSARDGVLNIKATDNEIGLEYKVKNA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T + L DI++ L+DG + +N + I +S + L +FP Sbjct: 61 TIADEGMATANGKKLLDIIKSLKDGDIMLETIQNH----LYIKQNNSKYRLPMQKPEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F++ + L +++ ++ + L G I ++ + L V TD Sbjct: 117 EFPSLENKKKFDINAGSLSKSLKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+V +++I +Q SII+P+KA+ EI ++ ++++ E+ ++ Sbjct: 175 RLSVYQLEINSQ-NDPFSIIIPKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFT 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G +P+Y V+P + + +N + + + +S++S VK++++ D + Sbjct: 231 KLINGRYPDYTRVVPNEIKQNIILNREKIIEGIKTISMLSE----IVKITIAPDNISFES 286 Query: 300 DNPDMGKAIESMNVYYNECPMDI-CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 N D +A + N I +++L+ + +I D E + N Sbjct: 287 INDDNSEAKTFIEYRSNVSDQIILGVKNRFILDFLSSIE-----DSEFNLGYNEPNLPFI 341 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + D + V+MP+ I Sbjct: 342 LSSGDLRT------------VVMPVNI 356 >gi|256844895|ref|ZP_05550353.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] gi|256718454|gb|EEU32009.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 381 Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 92/400 (23%), Positives = 173/400 (43%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + + + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I S ++ + +++++D + E G + I DS ++P Sbjct: 61 EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L ++ Sbjct: 118 NTFENVVLNENNFKFEMPSQDLVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFIS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I S+ VP + I++I+ D+ V KV E+ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 + +LI+ FPNY ++ S DK+L +N L + R+ I S ++ S Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + +K+ ++ N ++ + E ++V + + I N KYLLE I NIS ++ E Sbjct: 294 KHNEENKNKMTVSALN-ELARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + KD D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|19703871|ref|NP_603433.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296329377|ref|ZP_06871877.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|19714031|gb|AAL94732.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|296153497|gb|EFG94315.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 381 Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 172/400 (43%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRIVEKSVKENKIKPILSCIYAKVKGNKIYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + ++ + +++++D + E G + I DS F ++P Sbjct: 61 EVIREGEVAFYYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L V+ Sbjct: 118 NTFENIVLNENNFKFEMPSQELVNIFEKVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I+ S+ VP + I++I+ D+ V K+ ++ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDISD-FSVSVPADTISSIIKIIKGLDNEVIKIYKEDAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 + +LI+ FPNY ++ S DK+L +N L + R+ I S ++ S Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLHMNNDKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + +K+ ++ N ++ + E ++V + + I N KYLLE I NI ++ E Sbjct: 294 KHNEENKNKMAISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + KD D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|237741560|ref|ZP_04572041.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|294785822|ref|ZP_06751110.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] gi|229429208|gb|EEO39420.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|294487536|gb|EFG34898.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] Length = 381 Score = 191 bits (487), Expect = 1e-46, Method: Composition-based stats. Identities = 92/400 (23%), Positives = 173/400 (43%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + + + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I S ++ + +++++D + E G + I DS ++P Sbjct: 61 EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L ++ Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFIS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I S+ VP + I++I+ D+ V KV E+ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 + +LI+ FPNY ++ S DK+L +N L + R+ I S ++ S Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + +K+ ++ N ++ + E ++V + + I N KYLLE I NIS ++ E Sbjct: 294 KHNEENKNKMTVSALN-ELARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + KD D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|88697472|gb|ABD48430.1| DnaN [Morganella morganii] gi|88697488|gb|ABD48438.1| DnaN [Morganella morganii] gi|88697490|gb|ABD48439.1| DnaN [Morganella morganii subsp. sibonii] Length = 193 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 76/199 (38%), Positives = 118/199 (59%), Gaps = 7/199 (3%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ A+P G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 DGAQIS + G + + G S F L + P S+FP+ + + +F L+ + LK L+E Sbjct: 61 DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLSQATLKRLIE 117 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI ++ S+IVPR Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPD-HSVIVPR 174 Query: 203 KAVGEILRILSSKDSSVKV 221 K V E++R+L D+ +K+ Sbjct: 175 KGVIELMRLLDGGDALLKL 193 >gi|88697476|gb|ABD48432.1| DnaN [Morganella psychrotolerans] gi|88697478|gb|ABD48433.1| DnaN [Morganella psychrotolerans] gi|88697492|gb|ABD48440.1| DnaN [Morganella psychrotolerans] gi|88697494|gb|ABD48441.1| DnaN [Morganella psychrotolerans] gi|88697496|gb|ABD48442.1| DnaN [Morganella psychrotolerans] gi|88697498|gb|ABD48443.1| DnaN [Morganella psychrotolerans] gi|88697500|gb|ABD48444.1| DnaN [Morganella psychrotolerans] gi|88697502|gb|ABD48445.1| DnaN [Morganella psychrotolerans] gi|88697504|gb|ABD48446.1| DnaN [Morganella psychrotolerans] gi|88697506|gb|ABD48447.1| DnaN [Morganella psychrotolerans] gi|88697510|gb|ABD48449.1| DnaN [Morganella psychrotolerans] gi|88697512|gb|ABD48450.1| DnaN [Morganella psychrotolerans] Length = 193 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 7/199 (3%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ +P G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVPLVQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 DGAQIS + G + + G S F L + P S+FP+ + + +F L + LK L+E Sbjct: 61 DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIE 117 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI + S+IVPR Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPD-HSVIVPR 174 Query: 203 KAVGEILRILSSKDSSVKV 221 K V E++R+L ++ +K+ Sbjct: 175 KGVIELMRLLDGGETLLKL 193 >gi|254304130|ref|ZP_04971488.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324322|gb|EDK89572.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 381 Score = 191 bits (486), Expect = 1e-46, Method: Composition-based stats. Identities = 89/400 (22%), Positives = 171/400 (42%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + I+ P+ + + + + + I +I Sbjct: 1 MHIRVNRQNFLSAIRIVEKSIKENKIKPILSCIYAKVKGNKIYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G + ++ + +++++D + E G + I DS F ++P Sbjct: 61 EVIREGEVAFYCSIIDEYLKEIKDEFIVLRV---ENGNILFIETEDSITEYDVFSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L + E F+ T + +N I + L V+ Sbjct: 118 NTFENIILNENNFKFEMPSQELVTIFENVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I S+ VP + I++I+ D+ V K+ ++ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKIYKEDAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290 ++ +LI+ FPNY ++ S DK+L +N L + R+ I S ++ S Sbjct: 234 TTIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 +++K+ ++ N ++ + E ++V + + I N KYLLE I NI ++ E Sbjct: 294 KHGEENNNKMSISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + KD D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|307592396|ref|YP_003899987.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822] gi|306986041|gb|ADN17921.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822] Length = 497 Score = 191 bits (486), Expect = 2e-46, Method: Composition-based stats. Identities = 85/402 (21%), Positives = 171/402 (42%), Gaps = 29/402 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGLLEIKASGPEIEITGAIPA 59 +I+ +++ +LE + I P+ +LL+ L++++ E + I A Sbjct: 104 QISTDKNALLEAIELVKAGISNNPAYPILGMILLELETEKQRLKLRSYNYEFGFSTEIEA 163 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN------FYLQSF 113 + GSI + A L Y I+RK G + + N+ T+ ++ F ++ Sbjct: 164 GITGKGSIALPAALFYAILRKFPMGECLLTLQTNDEATDEIVAKLSLKEQPDNFFEIRGL 223 Query: 114 PESEFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE----D 168 P +++P + L ++ + FA + EE + L G F ++ Sbjct: 224 PGNQYPEYPTVSPTTVMACFSGDFLISIFNGSLFAASNEETKRVLTGTHFLLSYNPDKKL 283 Query: 169 LKLCAVATDGHRLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 L TDGHR+ + + + + S+ +P KA+ E+ + L D +K+ LSE+ Sbjct: 284 TTLKTFTTDGHRMVFSEGMTKDQSTLDEPVSLTIPVKALRELQKHLLPSD-QIKLYLSEN 342 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 + R I+G +P+ +NVI + L+ ++R I+ + Sbjct: 343 LCRFQWGLNELVSRTIEGAYPDCENVINEILSQSSHSFTCQRGQLQDTLERFLILCTKSE 402 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342 + +K+ + S+K +++ D+ + ES+ + + P+ + +N YLLEII I Sbjct: 403 RVMKMKIESEKDYLSISQKDVARGQESIPIENFTGKPLKLLYNVNYLLEIIKAIP----- 457 Query: 343 DDEVVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +D ++ L +S + I S + V+ Y+L P+ Sbjct: 458 NDTIILHLGNSPTDATLITPSINSSHSLA---VHLKYLLAPL 496 >gi|256026784|ref|ZP_05440618.1| DNA polymerase III, beta chain [Fusobacterium sp. D11] gi|289764779|ref|ZP_06524157.1| DNA polymerase subunit III [Fusobacterium sp. D11] gi|289716334|gb|EFD80346.1| DNA polymerase subunit III [Fusobacterium sp. D11] Length = 381 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 90/400 (22%), Positives = 169/400 (42%), Gaps = 36/400 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + + + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVD 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I S ++ + +++++D + E + I DS ++P Sbjct: 61 EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENRNILFIETEDSTTEYDVHSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L V+ Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I S+ VP + I++I+ D+ V KV E+ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS---SVRIQAVKLSL 290 + +LI+ FPNY ++ S DK+L +N L + R+ I S S + Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293 Query: 291 SSDK-----LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 ++ + ++ N ++ + E ++V + + I N KYLLE I NI ++ E Sbjct: 294 KHNEENKGIMTISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEK----E 348 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V SNS+V + KD D Y+LMP+ + Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379 >gi|253582114|ref|ZP_04859338.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725] gi|251836463|gb|EES65000.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725] Length = 376 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 164/395 (41%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M + ++R D L+ L + I P+ ++ + L + E IT + Sbjct: 1 MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETREENLFFCGTNLETTITTEMKCE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G I L+ + +R+++D ++N + I DS+ +FP Sbjct: 61 EIVEEGKIVFQHQLVDEYLREIKDEIVTLSVRDNN----LFIESSDSSSEFSLMEAEDFP 116 Query: 120 ST----KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + F++ S+ L ++ E+ FA ++ +N + +LK + Sbjct: 117 RILVEADFFQRQEDFKINSTELADIFEKVKFAASSSSENLPINCVRLESEGNNLKF--IT 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234 TD +RL E ++ ++ + + +P + + ++L S +++ +K +++ +E Sbjct: 175 TDTYRLVFLEKELE-KVNEKLGVSIPLNTIEALAKLLRSIEETEIKFYFYNKQVYFKLED 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSL 290 + R+ID FPNY+ ++ +K L +N + + R+ I L Sbjct: 234 TLIISRVIDLAFPNYRGILGNDTYNKTLIINSEKFLKVLRRIIIFVRNNVESKYGATFEL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +L + N D+ K E + V Y + I N K+L + I N++ + ++ Sbjct: 294 EGKELKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSDFIQNLNKE----SNIMLNF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SSNSSV I+ ++ D N Y++MP+ + Sbjct: 349 ISSNSSVKIKKENDD---------NYLYIVMPLAL 374 >gi|229133511|ref|ZP_04262338.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196] gi|228649911|gb|EEL05919.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196] Length = 393 Score = 191 bits (485), Expect = 2e-46, Method: Composition-based stats. Identities = 70/280 (25%), Positives = 136/280 (48%), Gaps = 22/280 (7%) Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L +EFP+ + ++ + L + ++T FA A E R L G+ F I + Sbjct: 130 NLNGLSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRRVLTGVHFVI--DH 187 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 KL ATD HRLA+ E+ I + + IVP + E+L++++S + V + LSES I Sbjct: 188 NKLICAATDSHRLALREIPISSHA--KLNCIVPNSTISELLKLMNSNSNLVYIYLSESHI 245 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVK 287 ++++ RLI+G++PN +IP + + ++ + Q VDR S+++S V Sbjct: 246 IFKFGTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVN 305 Query: 288 LSLSSD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 L + + + ++ + +GK E+ ++ + E ++I F+ +Y+++ + I +D Sbjct: 306 LEIIDECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----ED 360 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V S + I ++ + A Y++ P+R Sbjct: 361 RVTLSFGGSMRPILIEAGEQSA---------AVYLISPVR 391 Score = 37.5 bits (86), Expect = 3.3, Method: Composition-based stats. Identities = 30/242 (12%), Positives = 75/242 (30%), Gaps = 5/242 (2%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +I VE ++E+ + + V V + L A+ IP S Sbjct: 150 EIQVETEQLIEVFKQTVFATAKNESRRVLTGVHFVIDHNKLICAATDSHRLALREIPISS 209 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + V + ++++ + + + + +E L Sbjct: 210 HAKLNCIVPNSTISELLKLMNSNSNLVYIYLSESHIIFKFGTITLYSRLIEGKYPNISGL 269 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATDGHR 180 E + + V+R+ + N + I +E +++ + A+ + Sbjct: 270 IPNESQTVINIDRKKILQGVDRSSLLASEWAN----NNVNLEIIDECTIQISSNASQIGK 325 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 ++ + K +I + + + L+ + ++ S I + S +V Sbjct: 326 ISETQQIDAIHGEKQLNISFDGRYMVDTLKAIKEDRVTLSFGGSMRPILIEAGEQSAAVY 385 Query: 241 LI 242 LI Sbjct: 386 LI 387 >gi|331703022|ref|YP_004399709.1| DNA polymerase IIIsubunit beta [Mycoplasma mycoides subsp. capri LC str. 95010] gi|256384459|gb|ACU79029.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|256385292|gb|ACU79861.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri str. GM12] gi|296455793|gb|ADH22028.1| DNA polymerase III, beta subunit [synthetic Mycoplasma mycoides JCVI-syn1.0] gi|328801577|emb|CBW53730.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. capri LC str. 95010] Length = 375 Score = 190 bits (484), Expect = 2e-46, Method: Composition-based stats. Identities = 72/373 (19%), Positives = 155/373 (41%), Gaps = 19/373 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++ R +L+ L A ++I+ KN P + L + I A+ + + Sbjct: 1 MNFSINRMVLLDNLSKAAKVIDPKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60 Query: 58 --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G + + + +++R+L D + E+ E+ I +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKFVLEMLRRLDDEFVVFSMVED---NELIIKTDNSDFSIGVLNS 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E F L +K + + +M + L G+ + + K Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKL--NNNKAIFST 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD R++ ++I + + I +P K E+ ++L + + ++K+ + E I I+++ Sbjct: 176 TDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAE-NLKIIIVEGYITFIIDNV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294 LIDG FPN Q P + + V ++ + + R +++ + A V + ++ DK Sbjct: 235 IFQSNLIDGRFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294 Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++GK E + V + I FN ++L++ I + +D + +L + Sbjct: 295 IEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLD-----EDRIELKLIN 349 Query: 353 SNSSVFIRGKDKD 365 S + I + Sbjct: 350 STKPIVINNVYDE 362 >gi|313112576|ref|ZP_07798237.1| DNA polymerase III beta subunit protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310625098|gb|EFQ08392.1| DNA polymerase III beta subunit protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 246 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 8/253 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I ++ + + + + ++ IPV +LL+A L + E+ I I A+ Sbjct: 1 MNIVCDKVLLSAAIDGVSKAVTMRSAIPVLEGILLKAEGFQLNLTGYDLEMGIVTTIEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + ++A LL ++ ++ G EN + I G F +QS P ++FP Sbjct: 61 VKEAGEVVLNAKLLSSMISRMPAGQVSILSAEN---GKTTIQSGVVQFEIQSMPANDFPE 117 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + VLK++++RT +A++ +E + G F I + KL VA DG+R Sbjct: 118 LPNTGAEETLTIKTGVLKDMIDRTLYAVSQDEKKPAHTGELFEILPD--KLTVVALDGYR 175 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239 LA+ E + A K IIVP K + E+ +L + + V +S + + ++ Sbjct: 176 LAIVERPVTA--VKDIRIIVPSKTMTEVAHLLPNDDEEPVHISANRRYVVFMAGGYTIMS 233 Query: 240 RLIDGEFPNYQNV 252 RLI+GEF NY+NV Sbjct: 234 RLIEGEFLNYRNV 246 >gi|213581271|ref|ZP_03363097.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 170 Score = 190 bits (484), Expect = 3e-46, Method: Composition-based stats. Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 4/171 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + + + F L + +K L+E T F+MA +++RYYLNG+ F +L+ Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR 168 >gi|119383721|ref|YP_914777.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222] gi|119373488|gb|ABL69081.1| DNA polymerase III beta subunit family protein [Paracoccus denitrificans PD1222] Length = 372 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 170/391 (43%), Gaps = 41/391 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 IT +D+ + A ++ER+NTIPV + ++ + L I+++ + + PA+ Sbjct: 15 ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFPST 121 + A LL ++ + +S + G V + G + +Q S++P+ Sbjct: 75 EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + L ++ R +A++TEE RYYLNGI+ H + +L ATDGHRL Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMH--GREGRLAVTATDGHRL 189 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238 A+ DI K+P +I PR +V + +++ + + S R+ ++ + S++ Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246 Query: 239 VRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQ--AVDRVSIMSSVRIQAVKLSLSSDK 294 V+ IDG +P+Y VIP +N LR+ R+ ++ L DK Sbjct: 247 VKCIDGAYPDYTRVIPDRGTMRGYAVINRALLRRFPNTRRMHLLRDA------LKFDLDK 300 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +++ +G + + + I FN Y+ E+ + V ++ Sbjct: 301 RVANLNSVGLG-IDVEIPIEADG-DFAIGFNEGYVREVARIFDT-------VRIEASTAR 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I +D D V+MPMR+ Sbjct: 352 DAALILTEDPDLTV----------VVMPMRV 372 >gi|313667262|ref|YP_004049663.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM 14977] gi|313153893|gb|ADR37743.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM 14977] Length = 406 Score = 190 bits (483), Expect = 3e-46, Method: Composition-based stats. Identities = 80/400 (20%), Positives = 153/400 (38%), Gaps = 39/400 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 ITVE + L R++ +++ P V L +G L + + ++ +PA Sbjct: 29 ITVETKALKGALDRLARVLPARSSEPAYLSVALTPAEGALVLAGTNGAQDLELVLPAEAP 88 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 + V A L +VR L G + G + + G L + Sbjct: 89 PGPTRLVPAAPLTQVVRSLGAGTVTLTLE----GETLTLEAGRFATRL-HLSAGDLELPL 143 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + L ++ L L+E +A + E R G+ ++ E +L VA+DG RLA Sbjct: 144 DFGGDPLASLPAAELAALLEPVAYATSNENYRAVFTGVQLEVHPE--RLRGVASDGFRLA 201 Query: 183 VAEVDIVAQI----------------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226 + + + + +++VP+ +V E+LR+L + V++ Sbjct: 202 LVDRPLPEGAAVHRTFPVPEDGDGAAPEPLALVVPKASVVELLRVLRGVEGVVQLHHRPG 261 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 R+ L+ E + + L+DG +P Y VIP + R+A+ R ++MS V Sbjct: 262 RLALHAEGVRYATALLDGTYPEYARVIPAEAPFVAEFDVRPFREALRRTTVMSDATNHRV 321 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 L+ ++ + + D G+ E + + Y P+ N YL + + V Sbjct: 322 DLTFEEGRVRLVSEG-DYGRGEEVLEGIDYQGEPLTTALNASYLEDALG------PVARR 374 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L + + +R + V++P+R+ Sbjct: 375 ARLDLTGPTTPLAVRDAEA--------LDGYLAVVVPLRV 406 >gi|39938488|ref|NP_950254.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M] gi|39721597|dbj|BAD04087.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M] Length = 378 Score = 189 bits (481), Expect = 5e-46, Method: Composition-based stats. Identities = 84/393 (21%), Positives = 173/393 (44%), Gaps = 30/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + + + LE L +I+ +K P+ + +Q + L ++A+ I I I Sbjct: 1 MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENNLILEANNGNIAIKIEIKDE 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G I +I++K+ D EN + I + L+ Sbjct: 61 SLKIKKQGKIACLGRYFIEIIKKISDSLIKITVMENNF---LVIKTSFCEYKLKLMDVCN 117 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 F + + SF++ + LKN+++ + + + E R L G+ LK C AT Sbjct: 118 FLELDFSFQKLDSFQIETHFLKNMIKEINISTSKNEKRPILMGLNLIYQNNLLKAC--AT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIESL 235 D R++ ++++ + +I++P K++ E+ +IL S S+++ I L I++L Sbjct: 176 DSFRMSQKKINLDIEY-HNFNIVIPNKSLEELSKILEHCQSKYLKIYSDTQKIFLEIDNL 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSS 292 L++G +P Q + + + +N +L +A++RVS++ S +K L+ Sbjct: 235 WFQTSLLEGNYPQIQEIKLTNFPFSVHLNKDDLMKALERVSLLFSKEQMNTNVIKFILTK 294 Query: 293 -DKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + ++ + +G A+E + + + I FN KYL +++ +S EVVF Sbjct: 295 QNSIEISSSSESLGTALEKIIPLKVSANSFQIAFNAKYLEDVLKVLS-----VKEVVFYF 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 D+ I +KDS + ++++P+ Sbjct: 350 DNPLKPFIITTLEKDS---------SIHLILPI 373 >gi|187918303|ref|YP_001883866.1| DNA polymerase III, beta chain [Borrelia hermsii DAH] gi|119861151|gb|AAX16946.1| DNA polymerase III, beta chain [Borrelia hermsii DAH] Length = 386 Score = 189 bits (481), Expect = 6e-46, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 164/399 (41%), Gaps = 36/399 (9%) Query: 2 KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 K + I + + A II +N + +LL+ + L IKA+ I IP Sbjct: 4 KFILCDTEQISDEIEKAKSIILNRNINDIWSAMLLEVENSNLTIKATDRNIFFESTIPIV 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQIS---FFKENELGTEVNISHGDSNFYLQSFPESE 117 + ++A D V+ L ++ EN L + N E Sbjct: 64 STENFKVLINASNFSDAVKALNLYNELKIKFREDENRLNIIGESENKSENCTNDHLSEPT 123 Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 F E Y ++ +L K ++ + F+ + +E + LNGI+F +D Sbjct: 124 FSNEDIESYNYDINGETYNFTVDLNQKEFKKIINKISFSASHDESKNVLNGIYF-TKNKD 182 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L V+T+ HR++V + ++V + + IVP K +L+ + + +K+ +S+ + Sbjct: 183 STLTLVSTNSHRMSVYKTELV--FEEDINFIVPVKMFN-LLKQMMIGEGMIKLKVSDKKF 239 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ + ++ LI+G +P+Y+++IP V + L+ + RV+ + R + V L Sbjct: 240 YVEFNNYKIACSLINGNYPDYESIIPNEQQNRSLVEISVLKDRLARVNSYTDKRSKKVIL 299 Query: 289 SLSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + SS +L + ++P G+ E N Y I N YL E + + + Sbjct: 300 NFSSKQLRLMAEDPITGRKGEFFIQDPNYDYEGSEEAIAINSAYLTEAMGVFDTSK---- 355 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S + K N+ + + +++MPM Sbjct: 356 ---LEIKFSGGGIL--------KLNEPDNFDFIHLIMPM 383 >gi|88697514|gb|ABD48451.1| DnaN [Morganella psychrotolerans] Length = 193 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 73/199 (36%), Positives = 114/199 (57%), Gaps = 7/199 (3%) Query: 24 KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82 + T+P+ ++LL+ +DG+L + + E+E+ + G TV A DI R L Sbjct: 1 RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVSLVQPHENGETTVPARKFLDIWRGLP 60 Query: 83 DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142 DGAQIS + G + + G S F L + P S+FP+ + + +F L + LK L+E Sbjct: 61 DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIE 117 Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202 T F+MA +++RYYLNG+ F + L+ VATDGHRLAV +DI + S+IVPR Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPD-HSVIVPR 174 Query: 203 KAVGEILRILSSKDSSVKV 221 K V E++R+L ++ +K+ Sbjct: 175 KGVIELMRLLDGGEALLKL 193 >gi|119383096|ref|YP_914152.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222] gi|119372863|gb|ABL68456.1| DNA polymerase III beta subunit family protein [Paracoccus denitrificans PD1222] Length = 372 Score = 189 bits (480), Expect = 6e-46, Method: Composition-based stats. Identities = 90/391 (23%), Positives = 170/391 (43%), Gaps = 41/391 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 IT +D+ + A ++ER+NTIPV + ++ + L I+++ + + PA+ Sbjct: 15 ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFPST 121 + A LL ++ + +S + G V + G + +Q S++P+ Sbjct: 75 EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + L ++ R +A++TEE RYYLNGI+ H + +L ATDGHRL Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMH--GREGRLAVTATDGHRL 189 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238 A+ DI K+P +I PR +V + +++ + + S R+ ++ + S++ Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246 Query: 239 VRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQ--AVDRVSIMSSVRIQAVKLSLSSDK 294 V+ IDG +P+Y VIP +N LR+ R+ ++ L DK Sbjct: 247 VKCIDGAYPDYTRVIPDRGTMRGYAVINRALLRRFPNTRRMHLLRDA------LKFDLDK 300 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +++ +G + + + I FN Y+ E+ + V ++ Sbjct: 301 RVANLNSVGLG-IDVEIPIEADG-DFAIGFNEGYVREVARIFDT-------VRIEASTAR 351 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I +D D V+MPMR+ Sbjct: 352 DAALILTEDPDLTV----------VIMPMRM 372 >gi|152965735|ref|YP_001361519.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] gi|151360252|gb|ABS03255.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans SRS30216] Length = 391 Score = 189 bits (480), Expect = 8e-46, Method: Composition-based stats. Identities = 79/384 (20%), Positives = 154/384 (40%), Gaps = 26/384 (6%) Query: 5 VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI--EITGAIPASVD 62 V+ + E L +I R+ +P+ V L L ++ + ++ T +P Sbjct: 24 VDSKALAEALTDVNALIGRRPPVPILAGVRLDVEGDQLTLRRTNYDVVNTATLQLPQVGH 83 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPST 121 S VSA IVR + GA I + G E + I+ + L + ++P+ Sbjct: 84 PARSTVVSASAFAAIVRAIGPGASIILTLLHRSGREFLRIAGDGVTYQLITMDAGDWPAI 143 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 +E + +++ ++ L A + + ++ + E L A ATD RL Sbjct: 144 PADEVQHIATVSADDVQALALAGTAATS-DFTLPIIHAVRL--TERQGSLVAAATDRFRL 200 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 +V+ + + +VP A+ I R L+ ++ V +S + I + S S V+ Sbjct: 201 --LDVNTLHPVPAGFQALVPTDALEHIAR-LAKREGEVTISTVDEFIVFVVGSRSCRVKC 257 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +DGE+P ++ P + V+ +L +A+ R+ ++++ R V+L+ + + + + Sbjct: 258 VDGEYPKVDSLWPPESPIAATVDRGDLARALRRL-MVATPRNTPVELAFGRNVVVLIAGD 316 Query: 302 -PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D+ D N ++LL+ +D + D V F V I Sbjct: 317 KTDLDATTTVATTLTGAEAFDAALNPQFLLDGLDAVGG-----DRVTFAFTVPYRPVVIT 371 Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384 G + N Y+ MP+R Sbjct: 372 G----------GRPNTRYLQMPVR 385 >gi|85057282|ref|YP_456198.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom phytoplasma AYWB] gi|84789387|gb|ABC65119.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom phytoplasma AYWB] Length = 378 Score = 188 bits (479), Expect = 9e-46, Method: Composition-based stats. Identities = 81/393 (20%), Positives = 170/393 (43%), Gaps = 30/393 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + + + LE L +I+ +K P+ + +Q + L ++A+ I I I Sbjct: 1 MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENKLILEANNGNIAIKIEIKDK 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G I +I++K+ D EN I + L+ Sbjct: 61 SLKIKKQGKIACLGRYFIEIIKKINDSLIKITVMENNFLVIKTIFC---EYKLKLMDVCN 117 Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 F + + F++ + KN+++ + + + E R L G+ LK C AT Sbjct: 118 FLELDFSFQKLDFFQIETHFFKNIIKEVNISTSKNEKRPILMGLNLIYQNNLLKAC--AT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIESL 235 D R++ ++++ + +I++P K++ E+ +IL S S+++ I L I++L Sbjct: 176 DFFRMSQKKINLDIKY-HNFNIVIPNKSLEELSKILEHCQSKHLKIYSDAQKIFLEIDNL 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSS 292 L++G +P Q + + + +N +L +A++RVS++ + +K L+ Sbjct: 235 WFQTSLLEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFYKEQINTNVIKFILTE 294 Query: 293 -DKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 + + ++ + +G A+E + + + I FN KYL +++ +S EVVF Sbjct: 295 RNSIEISSSSESLGTALEKIIPLKVSANSFQIAFNAKYLEDVLKVLS-----VKEVVFYF 349 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 D+ I +KDS + ++++P+ Sbjct: 350 DNPLKPFIITTLEKDS---------SIHLILPI 373 >gi|126658731|ref|ZP_01729876.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] gi|126619993|gb|EAZ90717.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110] Length = 391 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 77/398 (19%), Positives = 173/398 (43%), Gaps = 23/398 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M I+ + +++ L A ++I T + +V+L+A +L+++A +I ++ + A Sbjct: 1 MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G + V+ ++ L+D I+ + E + ++ F E + Sbjct: 61 NINTPGEVAVNCKDFLTLLNTLKDEVAITLSADEEYLHLKSQQGKEAKFAKGDIEEMPWI 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDG 178 + EE + + + L VE T +A+ATE + L G+ + + +E+ + ATDG Sbjct: 121 DSLTEEEIEQVSIEADDLIQAVEETKYAVATEMAKAILCGVCLNFDTDEENTVEFAATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPS-IIVPRKAVGE----ILRILSSKD--SSVKVSLSESRIHLN 231 HRLA V + +++P + + + ++ +S++ V +S E++I ++ Sbjct: 181 HRLARTRVLYEPSENNPENKLVMPTETLTLTAYALKQMETSEEIAEMVTISFDENKIQVD 240 Query: 232 IESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + R +DG++P+Y+ +I + N L +A+ + + + + Sbjct: 241 FSEGFIRSRKLDGKYPDYEMLINGDDFSLDCTFNRKQLLEALKFIDTFAVGKDSLCFIDF 300 Query: 291 SSDKLCMTVDNPD--MGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++ T+ + + G A +++ V N + FN YL + + + D V E+ Sbjct: 301 DPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNSNYLKQCLKAMPGDTVT-MEIT 359 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VFI ++ F ++MP++I Sbjct: 360 ETTGDQPGPVFISPLEE---------YKTFGLVMPIQI 388 >gi|237738340|ref|ZP_04568821.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC 9817] gi|229420220|gb|EEO35267.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC 9817] Length = 376 Score = 188 bits (478), Expect = 1e-45, Method: Composition-based stats. Identities = 82/395 (20%), Positives = 167/395 (42%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 MKI +ER + L+ L + I P+ ++ L + E IT + Sbjct: 1 MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLFFCGTNLETTITTEMKCK 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I L+ + +++L+D + + + I DS+ +FP Sbjct: 61 EVIESGKIVFQHQLVEEYLKELKDEFVVFSEIDGN----LVIESSDSSSEFSLMNVEDFP 116 Query: 120 STKEEEY----VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +E F++ S L ++E+ +A ++ +N + E+ KL + Sbjct: 117 KILVDEDFSQKEEIFKINSIELAEILEKVKYAASSSSDNLSINCVRME--NENKKLKFIT 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES 234 TD +RL E +I +I + + +P V + ++L S +S + +I +E Sbjct: 175 TDTYRLVYLEKEIE-KINENIDVSIPLNTVEALTKLLRSIESTDISFYFINRQIFFKMEE 233 Query: 235 LSMSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + + R+ID FPNY+ ++ S +K+L +N + + R++I ++ L Sbjct: 234 VLVISRIIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGATFYL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++ + N ++ K E + V Y + I N K+L + + ++ ++ ++ Sbjct: 294 EKKEMQVHGVN-EVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNK----DITLEF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +SNSSV I+ ++ + + YVLMP+ + Sbjct: 349 IASNSSVKIKEEEAN---------DYLYVLMPLAL 374 >gi|313664892|ref|YP_004046763.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50] gi|312949557|gb|ADR24153.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50] Length = 375 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 69/373 (18%), Positives = 154/373 (41%), Gaps = 19/373 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++ R +L+ L A ++I+ KN P + L + + + A+ + + Sbjct: 1 MNFSINRMILLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQINVIATSGILSFKSILNNQ 60 Query: 58 --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G + + + +++R+L D + E E+ I +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDQFVVFSMVEE---NELIIKTDNSDFSVGVLNS 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E F L +K + + +M + L G+ + Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTNNQAIFS--T 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD R++ ++I + + I +P K E+ ++L + + ++K+ + E I I+++ Sbjct: 176 TDSFRISQKILEIQSNNNEDIDITIPFKTALELPKLLDNAE-NLKIIIVEGYITFIIDNV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294 LIDG+FPN Q P + + V ++ + + R +++ + A V + ++ DK Sbjct: 235 IFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294 Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++GK E + V + I FN ++L++ I ++ +D + +L + Sbjct: 295 IEFKSFISEVGKYEEDFDNFVIEGNKSLSISFNTRFLIDAIKTLN-----EDRIELKLIN 349 Query: 353 SNSSVFIRGKDKD 365 + I + Sbjct: 350 PTKPIVINNVYDE 362 >gi|83319869|ref|YP_424002.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] gi|1169394|sp|P24117|DPO3B_MYCCT RecName: Full=DNA polymerase III subunit beta gi|83283755|gb|ABC01687.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 375 Score = 187 bits (476), Expect = 2e-45, Method: Composition-based stats. Identities = 70/373 (18%), Positives = 157/373 (42%), Gaps = 19/373 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++ R +L+ L A ++I+ KN P + L + + + + + + Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60 Query: 58 --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G + + + +++R+L D + E+ E+ I +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVED---NELIIKTNNSDFSIGVLNS 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E F L +K + + +M + L G+ + + + Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKL--NNNQAIFST 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD R++ ++I + + I +P K E+ ++L + + ++K+ + E I I+++ Sbjct: 176 TDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAE-NLKIIIVEGYITFIIDNV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294 LIDG+FPN Q P + + V ++ + + R +++ + A V + ++ DK Sbjct: 235 IFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294 Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++GK E + V + I FN ++L++ I +S +D + +L + Sbjct: 295 IEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLS-----EDRIELKLIN 349 Query: 353 SNSSVFIRGKDKD 365 S + I + Sbjct: 350 STKPIVINNVYDE 362 >gi|256374406|ref|YP_003098066.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827] gi|255918709|gb|ACU34220.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827] Length = 365 Score = 187 bits (475), Expect = 3e-45, Method: Composition-based stats. Identities = 74/386 (19%), Positives = 151/386 (39%), Gaps = 25/386 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T S++ + R++ + PV V+L+A G +E+ S E + + A+ Sbjct: 1 MDLTATTSELASAVADVARLLPGRVLDPVLAGVVLRAGPGGVELSGSDRERSLRLSRAAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G+ V A L + +R L + Q+ E G+ + + G + F L + P Sbjct: 61 THSEGAALVPAKPLAETLRAL-ESPQVRLVVE---GSRLAVRTGAARFALPLLELGDHPG 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V + + + A + ++ G+ H + +L + +D +R Sbjct: 117 VPELPPVAG-SAPAGAFASALAAVATAASKDDALPVFTGVRVHAAGD--RLELITSDRYR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L A V + P + E+ + +++D V++ R+ L S S Sbjct: 174 LGFASVPWAGGALD---ALAPAVQLAEVAKQ-AARDERVELRADADRLALAWGGGSASTA 229 Query: 241 LIDGEFPN--YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 L+ FP+ + ++ + + + L AV R + S AV+L+ +L + Sbjct: 230 LLAAPFPDERARKLLAAEGECTVVLEADELAGAVRRAAPYSGAH-GAVQLAAEDGELRVR 288 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 +P G++ ES+ + + F +YL + + + V R+ S S Sbjct: 289 GSDPQAGESSESVKASVSGGLLTRSFQVRYLSDALRAFAGR-----RVELRVQSGLRSTV 343 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ S V Y+++P+R Sbjct: 344 LTAEEDTS------GVRLTYLVVPLR 363 >gi|315452737|ref|YP_004073007.1| DNA polymerase III subunit beta [Helicobacter felis ATCC 49179] gi|315131789|emb|CBY82417.1| DNA polymerase III, beta subunit [Helicobacter felis ATCC 49179] Length = 356 Score = 186 bits (474), Expect = 3e-45, Method: Composition-based stats. Identities = 78/389 (20%), Positives = 163/389 (41%), Gaps = 37/389 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + ++++ L +K+ + ++ HV ++A L +A+ E+ + + Sbjct: 1 MKFIIAKTELEAALKDLIAFTNKKDMVNITSHVCIEAKTDALIFQANDLEMGLCLTLNIP 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS ++A L DI+ KL+ G + ++N +++ S F L + FPS Sbjct: 61 AQETGSAVLNAKYLLDIISKLEKGDLLLESQDNF----MHVHFKRSKFKLPLLDKEYFPS 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +++ S L + ++ + T +Y +G+ + E L VATD R Sbjct: 117 FPTYDHLPVVYFDDSTLSDYFKKLAQVITTNASKYEFSGVLLALQEN---LELVATDTKR 173 Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 L+V +++I A +I+P++A+ E+ ++ ++ ++ I S+ + Sbjct: 174 LSVVQMEIGGTTSADRQELILPKRAMLEVAKLFR---GDFEMRYDKNMIFFKNASMVLFA 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296 +LI G++P+YQN+IP + +L N + + A++ + + K+ DK+ Sbjct: 231 KLISGKYPHYQNIIPSTFAHQLECNTQDFKDAINITQALGATT----KIIFRPDKIEFET 286 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + +NP + + I ++LL+ + +S+ F L N Sbjct: 287 LQTENPSFASTFVEASTPLDG--FVIHAQARHLLDALSALSTPTFD-----FCLSVENQP 339 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 I+ K V+MP+ I Sbjct: 340 FVIQ------------KNGFITVVMPVAI 356 >gi|228949343|ref|ZP_04111606.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] gi|228810326|gb|EEM56684.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar monterrey BGSC 4AJ1] Length = 379 Score = 186 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 76/401 (18%), Positives = 171/401 (42%), Gaps = 39/401 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M+ T+ + ++L L + R +P+ C + L+A L + AS E I I Sbjct: 1 MEFTINKQELLNNLVKVGKYSARSTNLPILCGIYLKATANELLLVASNKEDTIVSTISEI 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G + V + DIV+KL + +SF +N ++IS G + + L + + Sbjct: 61 QNFNIVQEGEVVVP-KTITDIVKKLPNDT-VSFTLDN--NNSLHISSGKTKYSLNTLSAN 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + + ++ L+ VE T++ A + L GI I+ + ++ AT Sbjct: 117 DYPDFTTKTLKFLVSISLKKLQRSVEATYYCAAENHSKPQLKGI--EISITNKEIAFAAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 D + L+ + + I S IVP + + + +++ +D +++ + L Sbjct: 175 DANTLSRSTIPITTDNNTEEKLLYSCIVPSRWLYDAIKMF--EDEEIELGFEGNSAILRS 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRI----QAV 286 + L + ++I+G++P+ + + + L ++++V+++ S+ + Sbjct: 233 KDLHIKTQIIEGKYPDVVKFMEFEKTVKTTISTDRLQLINSLEQVNVICSMNNPKSAALL 292 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDD 344 L L+S + ++ +N +G I + P+ I F+ Y+L + ++ +D Sbjct: 293 NLELNSKEFSLSNNNKSLGDVIVKNPIEIEGESIPISIGFSIDYMLRHLKSMQADV---- 348 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + S + R D + +++P+RI Sbjct: 349 -VKIGFIAEQSPLIFRNMDSEDFK----------LMLPIRI 378 >gi|157736273|ref|YP_001488956.1| DNA polymerase III subunit beta [Arcobacter butzleri RM4018] gi|157698127|gb|ABV66287.1| DNA polymerase III, beta subunit [Arcobacter butzleri RM4018] Length = 356 Score = 186 bits (474), Expect = 4e-45, Method: Composition-based stats. Identities = 78/385 (20%), Positives = 168/385 (43%), Gaps = 35/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK + ++ + ++ +E+K++ ++ H+ L+ N+ L IKA+ EI + I Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V G TV+ L I+++L++ I N + I S F L ++ +EFP Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNN----LVIKQNKSTFKLPTYDANEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + +++ N + + A+ ++ LNG I K+ V+TD Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIK--SQKINFVSTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + +I+P+KA+ EI ++ + K+S + + ++ + Sbjct: 175 RLALSF--LENMNNDEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y+ +IP + + L +++ V+ + +K++ SS + Sbjct: 230 KLINGKFPDYERIIPSNLKHNFFLPKNVLVESIKLVTSL----FSNIKITFSSKSIIFES 285 Query: 300 DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A +++ N + N KYLL+ + +++V + SN + Sbjct: 286 LDEDS-EAKTQIDIDLNIPNEFFLAVNAKYLLDFLS-----MTNNEKVKIGFNESNLPFY 339 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + ++MP+ Sbjct: 340 LE------------DDKFITIVMPI 352 >gi|296271547|ref|YP_003654178.1| DNA polymerase III subunit beta [Arcobacter nitrofigilis DSM 7299] gi|296095722|gb|ADG91672.1| DNA polymerase III, beta subunit [Arcobacter nitrofigilis DSM 7299] Length = 356 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 74/385 (19%), Positives = 168/385 (43%), Gaps = 35/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M+ + ++ ++ +E+K++ ++ H+ L+ + L +KA+ EI + + Sbjct: 1 MRFIIAKNIFENIISSMQPFLEKKDSSSITSHIYLEVINSKLILKATDYEIGLESYVNDI 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G TV+ L I+++L++ I +N + I S F L + +E+P Sbjct: 61 EESTDGKGTVNGSNLLGIIKRLKNDKIIVETIDNN----LVIKQSRSTFKLPMYDANEYP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + +++ L N + + A+ ++ LNG I + K+ VATD Sbjct: 117 NLIMNTELNILNISTISLVNSIRKITPAIDNNNPKFELNGALIDIK--NSKINFVATDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + ++ I+P+KA+ EI ++ K++ ++ + + ++ Sbjct: 175 RLAISHLQNISN--NESQFIIPKKAIIEIQKLFLD---DAKIAYDDTNLVIETDNSKFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y+ +IP S L + L ++ V+ + +K++ S + + Sbjct: 230 KLINGKFPDYERIIPNSLKYNLTLPKAMLIDSIKLVTSL----FSNIKITFSPNSMVFES 285 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D ++ +++ N + N KYLL+ + + ++ VV + SN + Sbjct: 286 LDEDT-ESKTQIDIDLNISENFYLAVNAKYLLDFLSMSN-----NENVVVGFNESNLPFY 339 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + F ++MP+ Sbjct: 340 LE------------DDKFFTIVMPI 352 >gi|257469128|ref|ZP_05633222.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185] gi|317063375|ref|ZP_07927860.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] gi|313689051|gb|EFS25886.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] Length = 376 Score = 186 bits (473), Expect = 5e-45, Method: Composition-based stats. Identities = 79/395 (20%), Positives = 163/395 (41%), Gaps = 31/395 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M + ++R D L+ L + I P+ ++ L + E IT + Sbjct: 1 MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETRGENLFFCGTNLETTITTEMKCE 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + G I L+ + +R+++D ++N + I DS+ +FP Sbjct: 61 EIVEEGRIVFQHQLVDEYLREIKDEIVTLSVRDNN----LFIESSDSSSEFSLMEAEDFP 116 Query: 120 ST----KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + F++ S L ++ E+ FA +T +N + +LK + Sbjct: 117 KILVEADFFQRQEDFKMNSVELADIFEKVKFAASTSSDNLSINCVRLESEVNNLKF--IT 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234 TD +RL E ++ ++ + + +P + + ++L S +++ +K +++ +E Sbjct: 175 TDTYRLVFLEKELE-KVNEKLEVSIPLNTIEALTKLLRSIEETEIKFYFYNKQVYFKLED 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + R+ID FPNY+ ++ + +K L +N + + R+ I ++ L Sbjct: 234 TLIISRVIDLAFPNYKGILGNNTYNKTLLINSEKFLKVLRRIIIFVRNNAESKYGATFEL 293 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L + N D+ K E + V Y + I N K+L + I N++ + ++ Sbjct: 294 EGKDLKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSDFIQNLNKE----SNIMLNF 348 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SSN SV I+ ++ D N Y++MP+ + Sbjct: 349 ISSNGSVKIKKENDD---------NYLYIVMPLAL 374 >gi|315635402|ref|ZP_07890668.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri JV22] gi|315480160|gb|EFU70827.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri JV22] Length = 356 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 168/385 (43%), Gaps = 35/385 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK + ++ + ++ +E+K++ ++ H+ L+ N+ L IKA+ EI + I Sbjct: 1 MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 + V G TV+ L I+++L++ I N + I S F L ++ +EFP Sbjct: 61 TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNN----LVIKQNKSTFKLPTYDANEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + E + +++ N + + A+ ++ LNG I K+ V+TD Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIK--SQKINFVSTDTR 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RLA++ + +I+P+KA+ EI ++ + K+S + + ++ + Sbjct: 175 RLALSF--LENMNNDEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP+Y+ +IP + + L +++ V+ + +K++ +S + Sbjct: 230 KLINGKFPDYERIIPSNLKHNFFLPKNVLVESIKLVTSL----FSNIKITFNSKSIIFES 285 Query: 300 DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A +++ N + N KYLL+ + +++V + SN + Sbjct: 286 LDEDS-EAKTQIDIDLNIPNEFFLAVNAKYLLDFLS-----MTNNEKVKIGFNESNLPFY 339 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + ++MP+ Sbjct: 340 LE------------DDKFITIVMPI 352 >gi|288561735|ref|YP_003429141.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] gi|288548367|gb|ADC52249.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4] Length = 373 Score = 186 bits (472), Expect = 6e-45, Method: Composition-based stats. Identities = 70/379 (18%), Positives = 175/379 (46%), Gaps = 26/379 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + ++L+ + + I+ V + ++A + + + S I IP Sbjct: 1 MKLTVMKEELLKGIDAVSKAIKGSQQELVYKSIKIEATEKGILLTGSNGVFTIVRMIPLE 60 Query: 61 VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 G++ V+ +L + V+K+ K + G + G L Sbjct: 61 FKGSEIATLVNEGTVLVNGKILLEAVKKMPK----EDIKIEQEGAVLKFKSGKFQVKLNI 116 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 E ++P+ E + SF L S+LK +++++ +A +T E R LNG+ I++ + L Sbjct: 117 LTE-DYPAPPEVDGA-SFTLEQSLLKQVLDQSVYACSTSEGRPILNGVKLSIDQGIMNL- 173 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLN 231 +AT+ + ++ + D+ + +P+I++P + E+ +L++ + + ++ SE + +N Sbjct: 174 -MATNSYIMSSLQKDLKNEELFLPNIVIPASPLNELQSLLATTEGTKCTLNCSEKHLLIN 232 Query: 232 IES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 I + +RL++G++P + IP ++ +++ ++L +++RVS + S V++ Sbjct: 233 ISHNLTLVYIRLLEGQYPVDRQFIPKNHPIKVKSKRSDLFSSLERVSSLGSEH---VEMK 289 Query: 290 LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 +S + +G + + +V ++ F + +L + + + ++++ Sbjct: 290 ISGKTVHFYAAQDQVGDLQDELTDVTIEGGETEVAFKPQNVLTALKH---QKYEKEDIIL 346 Query: 349 RLDSSNSSVFIRGKDKDSK 367 + S I +++++ Sbjct: 347 EIKDGLSPFLITLGNENTQ 365 >gi|42560562|ref|NP_975013.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|42492058|emb|CAE76655.1| DNA POLYMERASE III, BETA CHAIN [Mycoplasma mycoides subsp. mycoides SC str. PG1] gi|301320426|gb|ADK69069.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. mycoides SC str. Gladysdale] Length = 375 Score = 185 bits (471), Expect = 9e-45, Method: Composition-based stats. Identities = 71/373 (19%), Positives = 153/373 (41%), Gaps = 19/373 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++ R +L+ L A ++I+ KN P + L + I A+ + + Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60 Query: 58 --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G + + + +++R+L D E+ E+ I +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVTFSMVED---NELIIKTDNSDFSIGVLNS 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E F L +K + + +M + L G+ + Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTNNQAIFS--T 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD R++ ++I + + I +P K E+ ++L + + ++K+ + E I I+++ Sbjct: 176 TDSFRISQKILEIQSNNNEDIDITIPFKTALELPKVLDNAE-NLKIIIVEGYITFIIDNV 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294 LIDG+FPN Q P + V ++ + + R +++ + A V + ++ DK Sbjct: 235 IFQSNLIDGKFPNVQIAFPTKFQTIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294 Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + ++GK E + V + I FN ++L++ I ++ +D + +L + Sbjct: 295 IEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLN-----EDRIELKLIN 349 Query: 353 SNSSVFIRGKDKD 365 S + I + Sbjct: 350 STKPIVINNVYDE 362 >gi|260654350|ref|ZP_05859840.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1] gi|260630983|gb|EEX49177.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1] Length = 361 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 79/374 (21%), Positives = 151/374 (40%), Gaps = 26/374 (6%) Query: 17 ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLY 75 A R + V ++ ++A+ + I+ A V G+ + ++ Sbjct: 2 AERTTNSRVPQTSLYSVHIRCGQDGTFLEATDLKTSISVAAEGVQVVEEGAALLPVRVIG 61 Query: 76 DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE-LAS 134 ++++K+ D + E G + G + + + FP FP F + S Sbjct: 62 ELLKKI-DSEVVELSVTQERG---MLVAGKNQYDVAVFPTDLFPDMPRPSSDEPFALVPS 117 Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 L +++ A + E G + + +L AV+TDG RL++++ + Sbjct: 118 GELIRVLDEGIVAGSVSEEFPRYIGAC-QLQCQKGELRAVSTDGRRLSLSKCLCESGTDG 176 Query: 195 MPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 S++VP + E R L S D++V+V ++ +H + L SVR I+ FPNY+ V Sbjct: 177 --SVLVPLAPMKEFQRFLQSVESDATVRVFTDQALVHFCLPGLEYSVRRIESSFPNYEKV 234 Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DKLCMTVDNPDMGKAIESM 311 + L VN A++RV ++ V ++LS ++ + +P++GKA E + Sbjct: 235 LRKDFTSTLTVNRGLFIGALERVDLLVRENNHLVVVTLSPSGEMTLVGRSPEVGKACEHL 294 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 + + FN Y+L+ + DEV + SN + Sbjct: 295 SGMITGESLKAAFNANYMLDGLRAFHG-----DEVYMTFNGSN---------GQMNMMRP 340 Query: 372 NKVNAFYVLMPMRI 385 Y+LMP+ + Sbjct: 341 GSDTFLYMLMPVNL 354 >gi|203284346|ref|YP_002222086.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly] gi|201083789|gb|ACH93380.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly] Length = 386 Score = 185 bits (469), Expect = 1e-44, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 173/399 (43%), Gaps = 36/399 (9%) Query: 2 KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 K + I + + A II +N + +LL+ L IKA+ I IP Sbjct: 4 KFILCDTEQISDEIDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIV 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF---FKENELGTEVNISHGDSNFYLQSFPESE 117 ++ ++A L D V+ L ++ EN+L + + N+ E Sbjct: 64 STDNFNVLINASNLADAVKALNLYDELKMKFKEDENKLDIIGESDNNNENYTNDHLSEPT 123 Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 F +E Y ++FEL LK ++ + F+ + +E + LNGI+F + + Sbjct: 124 FSTEEIENYNYDINDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYF-TKDSN 182 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L V+T+ +R+++ + D++ + + IVP K +L+ + + + +K +S+ + Sbjct: 183 SVLTLVSTNSYRMSIYKTDLI--FEEDVNFIVPVKMFN-LLKQMITGEGVIKFKVSDKKF 239 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ + ++ LI G +P+Y+++IP ++ + + + RV+ + R + V L Sbjct: 240 YVEFNNYKIACSLISGNYPDYESIIPNEYTNRALIDVSMFKDRLSRVNSYTDKRSKKVIL 299 Query: 289 SLSSDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + S ++L + ++P G+ E N Y + N Y+ E + + ++ Sbjct: 300 NFSVNQLKLMAEDPITGRKGEFFMQGSNYDYAGTEEMLAINSVYITEAMGVFDTPKL--- 356 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 E+ F K N+++K + +++MP+ Sbjct: 357 EIKFS------------SGGLLKLNEEDKCDFIHLIMPL 383 >gi|194246592|ref|YP_002004231.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali] gi|193806949|emb|CAP18381.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali] Length = 376 Score = 185 bits (469), Expect = 2e-44, Method: Composition-based stats. Identities = 77/396 (19%), Positives = 175/396 (44%), Gaps = 35/396 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +++ LE L +II K P+ + ++ L ++++ I I Sbjct: 1 MHFKIKKEIFLEQLLKIQKIIPHKTFFPIFLGIKIKIKKDFLILESTDGNASIKIKIKNE 60 Query: 61 ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + GS+ +S +I++K+ EN + I + L+ + Sbjct: 61 SLKIQEEGSLLISGKYFIEIIKKINSDFIEMKKNEN---NSLTIKTELLEYKLKLMNLNY 117 Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E+ E+ ++ K +++ + A +E + L GI F + LK+ ++T Sbjct: 118 FPKINFFLEFKEKIEIKGNIFKKIIKEIKISAAKDEKKSILTGINFIYQKPFLKV--LST 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235 D RL+ ++ + K +I++ K + E+ +IL +D ++++ + ++ L L Sbjct: 176 DYFRLSQKKIKLDFNY-KNFNIVIHYKILEELSKILEYYEDDNLQIYFNSKKMFLKANDL 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSS 292 L++GEFP Q ++ + ++++N L + ++RVS +S+ I VKL++ Sbjct: 235 FFQTTLLEGEFPKTQEILENNFIYKIKLNKEKLIKTLERVSFISNKDINDVSVVKLTIKK 294 Query: 293 D-KLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + K+ ++ N ++G +E + N+ + ++I FN KYL +I+ + E++ Sbjct: 295 EKKIEISSYNDEIGNIVEEILPLENILF--KEIEISFNAKYLEDILKVF-----LVKEII 347 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 S+ + + + + ++++P+ Sbjct: 348 ISFQSAFKPFIVTSFEDKT---------SLHLILPL 374 >gi|154148349|ref|YP_001405625.1| DNA polymerase III subunit beta [Campylobacter hominis ATCC BAA-381] gi|153804358|gb|ABS51365.1| DNA polymerase III, beta subunit [Campylobacter hominis ATCC BAA-381] Length = 356 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 77/385 (20%), Positives = 169/385 (43%), Gaps = 33/385 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA-IPA 59 MK+ V++ + ++ + +E+K+ ++ H+L+ A DG+L IKA+ EI ++ Sbjct: 1 MKVIVKKGVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYKNRNV 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V G T + L + ++ L+D G + + S + L + ++FP Sbjct: 61 TVIDEGYATANGSKLMNAIKGLEDDEITLETA----GNSLFVKQKRSKYKLPMYNYTDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E FE+ S +L +++ ++ T +Y LNG I E+ + L V+TD Sbjct: 117 EFPTIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINL--VSTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL++ + A II+P+KA+ EI ++ S K V++ + ES Sbjct: 175 RLSLYTIPNQTSTANE-KIIIPKKAINEIQKLFSDK---VEIFYDANVFLAVSESFEFFS 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G+FP Y ++ + + + + + + ++ M ++K+++ ++ + Sbjct: 231 KLINGKFPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMCD----SMKITIKNNSILFES 286 Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + D +A + E ++ K+L++ + NI + F ++ ++ Sbjct: 287 ISEDNSEAKTEIETSIQIENQIEFSIRNKFLMDFLSNIEENSF-----KFDFNNEKTAFC 341 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 + D + ++MP+ Sbjct: 342 VSSGDLKT------------IIMPI 354 >gi|269114779|ref|YP_003302542.1| DNA polymerase III subunit beta [Mycoplasma hominis] gi|268322404|emb|CAX37139.1| DNA polymerase III beta chain [Mycoplasma hominis ATCC 23114] Length = 365 Score = 184 bits (467), Expect = 2e-44, Method: Composition-based stats. Identities = 73/371 (19%), Positives = 163/371 (43%), Gaps = 22/371 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI----EITGA 56 MK+ +++ + + + ++ +PV +L+QA D + + S E EI + Sbjct: 1 MKLKIDKLLLDNAIERVSKSVDANPFLPVMKGILIQAEDNKITLIGSNGETSIKHEIETS 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 I A +++ G + V L +I++KL DG + N + IS + N+ L + + Sbjct: 61 IDAQIELPGIVLVELSLFKNIIKKL-DGEIVLEVVNN----ILKISTNNENYNLNIYDVN 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+ + Y ++ + K+LV FA +T E+ L + I+ + K+ + T Sbjct: 116 EYIAIDFACYGEQVKINWNDFKSLVRDVIFAASTNEVSLILCCVN--ISAANKKIKFITT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D R A A DI + +I + K + +I + V +++S+ +I ++S + Sbjct: 174 DRFRYAQAVQDISEDV--TFNISILAKNLRDITNF--DYNGDVILNISDQKISFKLDSTT 229 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +++D + + ++P D EL++ L +++ S++ + +KL + + L Sbjct: 230 IESKVVDQLYQDVSRIVPQEFDTELKITKKELNNLLNKASVIINENYNKIKLHIVDNVLT 289 Query: 297 MTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ ++ A ++ N YN + + N ++L + I V +D + Sbjct: 290 ISSAREEIANAEIKTNNFSYNGEELKLALNSRFLKDAIS------VYEDNLNILFTKDKL 343 Query: 356 SVFIRGKDKDS 366 + I+ + Sbjct: 344 RIVIKSDSNPN 354 >gi|172054952|ref|YP_001806279.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142] gi|171701233|gb|ACB54213.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142] Length = 391 Score = 184 bits (467), Expect = 3e-44, Method: Composition-based stats. Identities = 76/398 (19%), Positives = 171/398 (42%), Gaps = 23/398 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 M I+ + +++ L A ++I T + +V+L+A +L+++A +I ++ + A Sbjct: 1 MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +++ G + V+ ++ L+D I+ + E + ++ F E + Sbjct: 61 NINTPGEVAVNCKDFLTLLNSLKDEVAITLSSDEEYLYLKSQQGKEAKFAKGDIEEMPWI 120 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDG 178 + EE + + + L VE T +A ATE + L G+ + + +E+ + ATDG Sbjct: 121 DSLTEEEIEQVSIEADDLIQAVEETKYAAATEMTKAILCGVCLNFDTDEENTVEFAATDG 180 Query: 179 HRLAVAEVDIVAQIAKMPS-IIVPRKAVGE----ILRILSSKD--SSVKVSLSESRIHLN 231 HRLA V + +++P + + + ++ +S++ V +S ES+I ++ Sbjct: 181 HRLARTRVLYEPSENTPGNKLVMPTETLTLTTYALKQMETSEEIAEMVTISFDESKIQVD 240 Query: 232 IESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + R +DG++P+Y+ +I + L +A+ + + + + Sbjct: 241 FSEGFIRSRKLDGKYPDYEMLINGDDFSLDCTFKRKQLLEALKFIDTFAVGKDSLCFIDF 300 Query: 291 SSDKLCMTVDNPD--MGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++ T+ + + G A +++ V N + FN YL + + + D V E+ Sbjct: 301 VPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNSNYLKQCLKAMPGDTVT-MEIT 359 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 VF+ ++ F ++MP++I Sbjct: 360 ETTGDQPGPVFVSPSEE---------YKTFGLVMPIQI 388 >gi|289677550|ref|ZP_06498440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 174 Score = 182 bits (463), Expect = 6e-44, Method: Composition-based stats. Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 6/179 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M T++R +L+ L ++ER+ T+PV +VLL L + + E+E+ G + Sbjct: 1 MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G ITV A L DI + L + A I + +++ + G S F L + P ++FP Sbjct: 61 EPAEPGEITVPARKLMDICKSLSNDALIDIKLDE---SKLIVKAGRSRFTLSTLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + +E +F L S L+ L+ERT FAMA +++RYYLNG+ ++ L+ AVATDG Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDG 174 >gi|50364817|ref|YP_053242.1| DNA polymerase III, beta chain [Mesoplasma florum L1] gi|50363373|gb|AAT75358.1| DNA polymerase III, beta chain [Mesoplasma florum L1] Length = 373 Score = 182 bits (462), Expect = 1e-43, Method: Composition-based stats. Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 21/373 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++++ +S +L L A ++IE KN P V ++ + L I +S + Sbjct: 1 MRLSINKSVLLNELTKASKLIELKNVNPALQGVYMEVSFDKLVIVSSNTSTSFKAELNNE 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 ++ G I V + +++RKL + +S F ENE + I SN + Sbjct: 61 NSDLIIEQPGRILVKPKFILELLRKLDSEFVTLSTFAENE----LEIITEKSNLKVSILN 116 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 EFP E + S K+ + +T ++ + L G+ I D K+ V Sbjct: 117 VEEFPLIGFVENGLELSIDSQEFKSTLTQTISSINEWNQKVVLAGMNLKIK--DNKISFV 174 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD R+++ E+ + + II+P K + E+ ++ + K+ + ++ +++ Sbjct: 175 TTDLFRVSLKEIILNEATNQEVDIIIPYKTLIELRNLIENVKE-FKIIIHDTNATFKLDN 233 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293 + LIDG +PN + P +++ +L + L + + R + + V L + Sbjct: 234 DLLQSTLIDGRYPNVHSAFPTTHEIKLELKAKTLLKVLSRFELTNDQNITSVVNLEIQQS 293 Query: 294 KLCMTVDNPDMGKAIESM-NVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + + + K E Y ++I FN KYL+E I + D + + Sbjct: 294 GIILKTTIAETVKYEEKFTEYKYEGSSNLNINFNTKYLIEAIRSFD-----DQLIHLTFN 348 Query: 352 SSNSSVFIRGKDK 364 S N V I G K Sbjct: 349 SQNKPVLITGAQK 361 >gi|203287880|ref|YP_002222895.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1] gi|201085100|gb|ACH94674.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1] Length = 386 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 81/399 (20%), Positives = 172/399 (43%), Gaps = 36/399 (9%) Query: 2 KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 K + I + + A II +N + +LL+ L IKA+ I IP Sbjct: 4 KFILCDTEQISDEIDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIV 63 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF---FKENELGTEVNISHGDSNFYLQSFPESE 117 ++ ++A L D V+ L ++ EN+L + + N+ E Sbjct: 64 STDNFNVLINASNLADAVKALNLYDELKMKFKEDENKLDIIGESDNNNENYINDHLSEPT 123 Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 F +E Y ++FEL LK ++ + F+ + +E + LNGI+F + + Sbjct: 124 FSTEEIENYNYDINDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYF-TKDSN 182 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L V+T+ +R+++ + D++ + + IVP K +L+ + + + +K +S+ + Sbjct: 183 SVLTLVSTNSYRMSIYKTDLI--FEEDVNFIVPVKMFN-LLKQMITGEGIIKFKVSDKKF 239 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++ + ++ LI G +P+Y+++IP ++ + + RV+ + R + V L Sbjct: 240 YVEFNNYKIACSLISGNYPDYESIIPNEYTNRALIDVFMFKDRLSRVNSYTDKRSKKVIL 299 Query: 289 SLSSDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + S ++L + ++P G+ E N Y + N Y+ E + + ++ Sbjct: 300 NFSVNQLKLMAEDPITGRKGEFFMQGSNYDYAGTEEMLAINSVYITEAMGVFDTPKL--- 356 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 E+ F K N+++K + +++MP+ Sbjct: 357 EIKFS------------SGGLLKLNEEDKCDFIHLIMPL 383 >gi|193216432|ref|YP_001999674.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1] gi|193001755|gb|ACF06970.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1] Length = 365 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 78/344 (22%), Positives = 150/344 (43%), Gaps = 18/344 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I + + + E + + +++ IPV +L++A D +L I AS EI I IP+S Sbjct: 1 MEIKINKWLLDEAIERVAKAVDQNPFIPVMKGILVEAQDSMLTIIASNGEISIKHVIPSS 60 Query: 61 VD----VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 VD G I V LL +IV+KL + G + ++ + L + S Sbjct: 61 VDMQILSPGIILVELSLLRNIVKKLDGDISLKSE-----GNLLTVTTEFDRYSLNLYDTS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 E+P Y + ++ LK++ + FA + E L + I+ D KL VAT Sbjct: 116 EYPEIDFAVYGETLKIKWDELKSITKNVSFAASNNEANLVLCCVN--ISAHDGKLKFVAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 + +R A +I + ++ + K + ++ SV +++SE +I ++S Sbjct: 174 NKYRYAEETKEIDSDA--NFNVSIQAKNLKDLTAF--DFKDSVLLNISEHKIAFEVDSTI 229 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + ++++ + + ++P L++ L + + S++ S +KLS+ L Sbjct: 230 IQSKVVNQPYQDVSRIVPREFATCLKIEKRELNNLLSKASVIISETNNKIKLSIVDGILM 289 Query: 297 MTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISS 338 + ++ A E + N Y+ + + N KYL E I Sbjct: 290 IASTRDEIANA-EIITKNFSYDGDELKLALNSKYLREAIAVFEG 332 >gi|218848051|ref|YP_002454851.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] gi|218546182|gb|ACK98575.1| DNA polymerase III, beta subunit [Bacillus cereus G9842] Length = 379 Score = 181 bits (461), Expect = 1e-43, Method: Composition-based stats. Identities = 81/401 (20%), Positives = 174/401 (43%), Gaps = 39/401 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M+ T+ + ++L L + R T+P+ C + L+A L + AS E I I Sbjct: 1 MEFTINKQELLNNLVKVGKYSARSTTLPILCGIYLKATSNELLLVASNKEDTIVSTISET 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G + V + DIV+KL D +SF +N ++IS G +N+ L + Sbjct: 61 NNFNIVQEGEVVVP-KTITDIVKKLPDDT-VSFTLDN--NNSLHISSGKTNYSLNTLSAD 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + + ++ L+ VE TH+ A + L GI I+ + ++ AT Sbjct: 117 DYPDFTTKTLKFLVTISLKKLQRSVEATHYCAAENHSKPQLKGI--EISITNKEIAFAAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 D + L+ + + I S IVP K + + +++ + +++ + L Sbjct: 175 DANTLSRSTIPITTDNNIEEKLLYSCIVPSKWLYDAIKMFEEE--EIELGFEGNSAILRS 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRI----QAV 286 + L + ++I+G++P+ + + + + L ++++V+++ S+ + Sbjct: 233 KDLHIKTQIIEGKYPDVVKFMEFEKKVKTTISTDRLQLINSLEQVNVICSMNNPKSAALL 292 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDD 344 KL L+S + ++ +N +G I + + P+ I F+ Y+L + ++ DD Sbjct: 293 KLELNSKEFSLSNNNKSLGDVIVKNPIEIDGETIPISIGFSIDYMLRHLKSMQ-----DD 347 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + S + R + + +++P+RI Sbjct: 348 VVKIGFIAEQSPLIFRNMNTEDFK----------LMLPIRI 378 >gi|71899734|ref|ZP_00681886.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] gi|71730529|gb|EAO32608.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1] Length = 218 Score = 181 bits (460), Expect = 1e-43, Method: Composition-based stats. Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 2/206 (0%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 +LK L+ERT FAMA +++RYYLNG+ + D KL VATDGHRLA+ E ++ Sbjct: 4 LLKELIERTAFAMAQQDVRYYLNGLLLDLR--DTKLRCVATDGHRLALCETELEQAKDLK 61 Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 II+PRK V E+ R+L D +++ ++ + I + ++ + +LIDG FP+Y+ VIP Sbjct: 62 RQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPI 121 Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 D+E++V LR A+ R +I+S+ + + V++ +S +L + NP+ +A E + Sbjct: 122 GADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAHNPEQEEAQEEIEAQT 181 Query: 316 NECPMDICFNYKYLLEIIDNISSDEV 341 + I FN YLL+ + ++ D V Sbjct: 182 IVDGLAIGFNVNYLLDALSSLRGDFV 207 >gi|289677551|ref|ZP_06498441.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae FF5] Length = 186 Score = 181 bits (459), Expect = 2e-43, Method: Composition-based stats. Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 14/200 (7%) Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + + A +IVPRK + E+ R+L+ +D +V + L + I + + +L+DG+ Sbjct: 1 MSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGK 60 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 FP+Y+ V+P DK + + LR+A R +I+S+ + + ++L L+S +L + +NP+ Sbjct: 61 FPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQE 120 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 +A E ++V YN ++I FN YLL+++ +++ ++V L SNSS ++ D D Sbjct: 121 EAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALVQESDND 175 Query: 366 SKNNKDNKVNAFYVLMPMRI 385 ++ YV+MPMR+ Sbjct: 176 ---------DSAYVVMPMRL 186 >gi|226321069|ref|ZP_03796611.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805] gi|226233479|gb|EEH32218.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805] Length = 385 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 173/398 (43%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIASE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + +L +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED KL Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301 Query: 292 SDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|218249720|ref|YP_002374949.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7] gi|218164908|gb|ACK74969.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7] Length = 385 Score = 180 bits (456), Expect = 4e-43, Method: Composition-based stats. Identities = 83/399 (20%), Positives = 171/399 (42%), Gaps = 37/399 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPESEF- 118 + ++A YD V+ +I NE +++ I + Y E F Sbjct: 67 TDFKVLINASNFYDAVKAFNFYKKIKIVF-NENNSKLEIMGELNDKKEEYEDHLKEPTFS 125 Query: 119 --------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 E+Y + E+ K ++ R F+ +E + LNG++F +ED K Sbjct: 126 YEEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSK 184 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 185 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYV 241 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTF 300 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 301 SELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----I 355 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 356 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|194097591|ref|YP_002000627.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] gi|193932881|gb|ACF28705.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] Length = 207 Score = 180 bits (456), Expect = 5e-43, Method: Composition-based stats. Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 7/202 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + ER +L+ L I+ER++T+P+ +VL++ G ++ A+ EI+I A P Sbjct: 4 LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 IT +A DI+R L GA +S ++ + + G S F LQ+ P ++FP Sbjct: 64 GDFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPAADFPMMN 120 Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E + +F L K ++ + ++MA ++IRYYLNG+ + L+L VATDGHRL Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRK 203 A I A + + +I+PRK Sbjct: 179 DYAACAIDADLPR-AEVILPRK 199 >gi|15594783|ref|NP_212572.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31] gi|195942017|ref|ZP_03087399.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi 80a] gi|216264913|ref|ZP_03436905.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a] gi|223888830|ref|ZP_03623421.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b] gi|2688357|gb|AAB91514.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31] gi|215981386|gb|EEC22193.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a] gi|223885646|gb|EEF56745.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b] Length = 385 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + +L +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED KL Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301 Query: 292 SDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|111115265|ref|YP_709883.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo] gi|216263342|ref|ZP_03435337.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1] gi|110890539|gb|ABH01707.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo] gi|215980186|gb|EEC21007.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1] Length = 386 Score = 179 bits (455), Expect = 6e-43, Method: Composition-based stats. Identities = 82/400 (20%), Positives = 173/400 (43%), Gaps = 38/400 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + I + A II +N + +L++ + L IK++ I IP + Sbjct: 7 FICDTNQITSEIEKAKGIILNRNMNDIWSALLIEVKNSNLIIKSTDRNIFFESTIPIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---------SHGDSNFYLQSF 113 + ++A YD V+ +I NE +++ I + + +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIK-IAFNENNSKLEIMGESKDEKEEEYEDHLKEPTF 125 Query: 114 PESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 E E+Y + E+ K ++ R F+ +E + LNG++F +ED Sbjct: 126 SYEEIENYNYDMVNEDYTFEIEIKQKSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDS 184 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 KL V+T+GHR+++ + ++ + + + IVP K + L+ L S + VK+ S+ + + Sbjct: 185 KLLFVSTNGHRMSICKTEVT--VEEDVNFIVPVK-IFNFLKHLMSGEGLVKIKSSDKKFY 241 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + ++ ++ LI G +P+Y+++IP + V+ + L+ + RV++ + V L+ Sbjct: 242 VEFDNYKIACSLISGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVDKSRKLV-LT 300 Query: 290 LSSDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 S +L + ++ G+ E N Y+ + N Y +E I + + Sbjct: 301 FSELQLKLLGEDLITGRKGEFFIKNSNYLYDGSDEVMAINISYFIEAISVFETSK----- 355 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S N K ++ +N +++MPM + Sbjct: 356 IEIQFNSGN----------VLKLSEPEDLNFMHLIMPMSL 385 >gi|237738323|ref|ZP_04568804.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817] gi|229420203|gb|EEO35250.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817] Length = 363 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 76/389 (19%), Positives = 159/389 (40%), Gaps = 32/389 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R ++ +L I++ P+ + + A D + + EIE I A Sbjct: 1 MKFSIIREQLISVLSEYTNILKENPIKPIVSGLKIIAKDNQVIFIGTNLEIEHIRKIEAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G + + LL + ++ L++ I F EN ++ + F + +P Sbjct: 61 VEREGEVVLKPFLLLEYIKLLEEDK-IEFSSENGF-----VAVHQAEFSV--LEGGSYPV 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E E + + L L++R FA + +N + +E+L L +TD +R Sbjct: 113 IPELESQSLLTIEGNRLVQLLDRAKFAASQSADNIQINCVRAVFKKEELNL--ASTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + K S +P + V + ++L + + + S + + E+ S + Sbjct: 171 LLFLREKVECNENKELS--IPMETVNILCKLLKDYNKEIHLGYSGETLVITWENSYFSSK 228 Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSSDKLC 296 I ++P+++ ++ S +K + N LR A+ RV ++ + + + + Sbjct: 229 TIGLQYPDFKTILRISAFEKRMEFNRDELRSAIKRVITVAKTSLDAKFGAIFNFTGKMMV 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + K + +N+ N K+L E IDNIS + V+ ++++S Sbjct: 289 INAFSG-RAKINQKVNMLKEGEDFKASLNCKFLAEYIDNIS------NNVIISGNNASSM 341 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 IR + + + Y+LMP+ + Sbjct: 342 FEIREEGNE---------DYIYILMPLAL 361 >gi|226321747|ref|ZP_03797273.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26] gi|461953|sp|P33761|DPO3B_BORBU RecName: Full=DNA polymerase III subunit beta gi|454040|gb|AAA58942.1| beta subunit of DNA polymerase III [Borrelia burgdorferi] gi|226232936|gb|EEH31689.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26] Length = 385 Score = 179 bits (454), Expect = 7e-43, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + +L +F Sbjct: 67 TDFKVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED KL Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301 Query: 292 SDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|312147910|gb|ADQ30569.1| DNA polymerase III, beta subunit [Borrelia burgdorferi JD1] Length = 385 Score = 179 bits (454), Expect = 8e-43, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + +L +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED KL Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301 Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|9966390|gb|AAG10236.1|AF201699_1 DNA polymerase III beta subunit [Sinorhizobium meliloti] Length = 164 Score = 178 bits (453), Expect = 9e-43, Method: Composition-based stats. Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 14/178 (7%) Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267 + ++L S D V V +S+++I L I S+ M+ +LIDG FP+YQ VIP SNDKELRV+C + Sbjct: 1 LQKLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLIDGTFPDYQRVIPASNDKELRVDCQS 60 Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327 QAVDRVS +SS R +AVKL+L+ ++ +TV+NPD G A E + V Y P++I FN K Sbjct: 61 FSQAVDRVSTISSERGRAVKLALADGQMTLTVNNPDSGSATEELPVGYESDPLEIGFNAK 120 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 YLL+I ++ E VF L S +R + +A YVLMPMR+ Sbjct: 121 YLLDITGQLTG-----GEAVFLLADPGSPTLVRDLAAE---------DALYVLMPMRV 164 >gi|312599863|gb|ADQ91857.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599891|gb|ADQ91871.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599893|gb|ADQ91872.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599895|gb|ADQ91873.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599897|gb|ADQ91874.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599901|gb|ADQ91876.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599903|gb|ADQ91877.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599929|gb|ADQ91890.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599935|gb|ADQ91893.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599937|gb|ADQ91894.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599939|gb|ADQ91895.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599941|gb|ADQ91896.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599943|gb|ADQ91897.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599945|gb|ADQ91898.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599947|gb|ADQ91899.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599949|gb|ADQ91900.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599951|gb|ADQ91901.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599953|gb|ADQ91902.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599955|gb|ADQ91903.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599957|gb|ADQ91904.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599959|gb|ADQ91905.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599961|gb|ADQ91906.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599963|gb|ADQ91907.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599965|gb|ADQ91908.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599967|gb|ADQ91909.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599969|gb|ADQ91910.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599971|gb|ADQ91911.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599973|gb|ADQ91912.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599975|gb|ADQ91913.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599977|gb|ADQ91914.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599979|gb|ADQ91915.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599981|gb|ADQ91916.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599983|gb|ADQ91917.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599985|gb|ADQ91918.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599987|gb|ADQ91919.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599989|gb|ADQ91920.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] gi|312599991|gb|ADQ91921.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Muenchen] Length = 184 Score = 178 bits (453), Expect = 1e-42, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 7/190 (3%) Query: 41 LLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV 99 L + + E+E+ + S G+ TV A +DI R L +GA+I+ E G + Sbjct: 1 TLSLTGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRM 57 Query: 100 NISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 + G S F L + P ++FP+ + + F L + +K L+E T F+MA +++RYYLNG Sbjct: 58 LVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNG 117 Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219 + F +L+ VATDGHRLAV + + A + S+IVPRK V E++R+L ++ + Sbjct: 118 MLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPL 174 Query: 220 KVSLSESRIH 229 +V + + I Sbjct: 175 RVQIGSNNIR 184 >gi|225548655|ref|ZP_03769702.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a] gi|225370685|gb|EEH00121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a] Length = 385 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 84/398 (21%), Positives = 172/398 (43%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + YL +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDYLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED KL Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LAFS 301 Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|228989125|ref|ZP_04149143.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] gi|228770552|gb|EEM19099.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar tochigiensis BGSC 4Y1] Length = 379 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 76/401 (18%), Positives = 171/401 (42%), Gaps = 39/401 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M+ T+ + ++L L + R +P+ C + L+A L++ AS E I I Sbjct: 1 MEFTINKQELLNNLVKVGKYSARSTNLPILCGIYLKATANELQLVASNKEDTIVSTISEI 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 +V G + V + DIV+KL + +SF +N ++IS G + + L + + Sbjct: 61 QNFNVVQEGEVVVP-KTITDIVKKLPNDT-VSFTLDN--NNSLHISSGKTKYSLNTLSAN 116 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P + + ++ L+ VE T++ A + L GI I+ + ++ AT Sbjct: 117 DYPDFTTKTLKFLVSISLKKLQRSVEATYYCAAENHSKPQLKGI--EISITNKEIAFAAT 174 Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 D + L+ + + I S IVP + + + +++ + +++ + L Sbjct: 175 DANTLSRSTIPITTDSNTEEKLLYSCIVPSRWLYDAIKMFEEE--EIELGFEGNSAILCS 232 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRI----QAV 286 + L + ++I+G++P+ + + + L ++++V+++ S+ + Sbjct: 233 KDLHIKTQIIEGKYPDVVKFMEFEKTVKTTISTDRLQLINSLEQVNVICSMNNPKSAALL 292 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDD 344 L L+S + ++ +N +G I + P+ I F+ Y+L + ++ +D Sbjct: 293 NLELNSKEFSLSNNNKSLGDVIVKNPIEIEGESIPISIGFSIDYMLRHLKSMQADV---- 348 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + S + R D + +++P+RI Sbjct: 349 -VKIGFIAEQSPLIFRNMDSEDFK----------LMLPIRI 378 >gi|221218172|ref|ZP_03589638.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a] gi|224532522|ref|ZP_03673147.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23] gi|224533532|ref|ZP_03674121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a] gi|225549474|ref|ZP_03770440.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a] gi|221192120|gb|EEE18341.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a] gi|224512594|gb|EEF82970.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23] gi|224513205|gb|EEF83567.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a] gi|225369751|gb|EEG99198.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a] Length = 385 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + +L +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED KL Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LAFS 301 Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|312149228|gb|ADQ29299.1| DNA polymerase III, beta subunit [Borrelia burgdorferi N40] Length = 385 Score = 178 bits (452), Expect = 1e-42, Method: Composition-based stats. Identities = 82/398 (20%), Positives = 171/398 (42%), Gaps = 35/398 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I+ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115 + ++A YD V+ +I E+ E+N + +L +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126 Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E E+Y + E+ K ++ R F+ +E + LNG++F +ED L Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSTL 185 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ S Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301 Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +L + ++ G+ E N Y+ + N Y +E I + + + Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|312599849|gb|ADQ91850.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599851|gb|ADQ91851.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599853|gb|ADQ91852.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599855|gb|ADQ91853.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599857|gb|ADQ91854.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599859|gb|ADQ91855.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599861|gb|ADQ91856.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599865|gb|ADQ91858.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599867|gb|ADQ91859.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599869|gb|ADQ91860.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599871|gb|ADQ91861.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599873|gb|ADQ91862.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599875|gb|ADQ91863.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599877|gb|ADQ91864.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599879|gb|ADQ91865.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599881|gb|ADQ91866.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599883|gb|ADQ91867.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599885|gb|ADQ91868.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599887|gb|ADQ91869.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599889|gb|ADQ91870.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Typhimurium] gi|312599899|gb|ADQ91875.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599905|gb|ADQ91878.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Saintpaul] gi|312599907|gb|ADQ91879.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg str. SARA30] gi|312599909|gb|ADQ91880.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599911|gb|ADQ91881.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599913|gb|ADQ91882.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599915|gb|ADQ91883.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599917|gb|ADQ91884.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599919|gb|ADQ91885.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599921|gb|ADQ91886.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599923|gb|ADQ91887.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599925|gb|ADQ91888.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599927|gb|ADQ91889.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Heidelberg] gi|312599931|gb|ADQ91891.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] gi|312599933|gb|ADQ91892.1| DNA polymerase III beta subunit [Salmonella enterica subsp. enterica serovar Paratyphi B] Length = 184 Score = 178 bits (451), Expect = 2e-42, Method: Composition-based stats. Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 7/190 (3%) Query: 41 LLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV 99 L + + E+E+ + S G+ TV A +DI R L +GA+I+ E G + Sbjct: 1 TLSLTGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRM 57 Query: 100 NISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159 + G S F L + P ++FP+ + + F L + +K L+E T F+MA +++RYYLNG Sbjct: 58 LVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNG 117 Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219 + F +L+ VATDGHRLAV + + A + S+IVPRK V E++R+L ++ + Sbjct: 118 MLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPL 174 Query: 220 KVSLSESRIH 229 +V + + I Sbjct: 175 RVQIGSNNIR 184 >gi|219685163|ref|ZP_03539983.1| DNA polymerase III, beta subunit [Borrelia garinii Far04] gi|219673259|gb|EED30278.1| DNA polymerase III, beta subunit [Borrelia garinii Far04] Length = 386 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 85/399 (21%), Positives = 171/399 (42%), Gaps = 36/399 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQITSEIEKAKGIILNRNMNDIWSALLIEVKRSNLIIKSTDRNIFFESTIAIISE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN-------FYLQSFP 114 + ++A YD V+ +I F EN E+ D +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGESQDKKEEKCEDHLKEPTFS 126 Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 E E+Y + EL K ++ R F+ +E + LNG+FF ED K Sbjct: 127 YEEIENYNYDMINEDYTFEIELKQKSFKKIINRIAFSAHFDESKNVLNGVFF-TKGEDFK 185 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYV 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ ++ LI+G +P+Y+++IP + + V+ + L+ + RV++ + + + L+ Sbjct: 243 EFDNYKIACSLINGNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYV-DKSKKLILTF 301 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S +L + ++ G+ E + N Y + N Y +E I + + + Sbjct: 302 SELQLKLLGEDLITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAISVFETSK-----I 356 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 385 >gi|224534779|ref|ZP_03675351.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S] gi|224514027|gb|EEF84349.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S] Length = 385 Score = 177 bits (450), Expect = 2e-42, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 172/399 (43%), Gaps = 37/399 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + I + A II +N + +L++ L I+++ I IP + Sbjct: 7 FICDTNQITSEIEKAKGIILNRNMNDIWSALLIEVEKSNLIIRSTDRNIFFESLIPIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN--------FYLQSFP 114 + ++A YD V+ +I NE +++ I N +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFCKKIKVVF-NENNSKLEIMEESKNEKEEYEDHLKEPTFS 125 Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 E E+Y + E+ + K ++ R F+ +E + LNG++F +ED + Sbjct: 126 YEEIENYNYDMVNEDYTFEIEVKQTSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDSQ 184 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L V+T+GHR+++ +++ + + + IVP K + L+ L S + VK+ S + ++ Sbjct: 185 LLLVSTNGHRMSICRTEVM--VEENVNFIVPVK-IFNFLKHLMSGEGMVKIKSSNKKFYV 241 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ ++ LI+G +P+Y+++IP + V+ + L+ + RV++ + V L+ Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVDKSRKLV-LNF 300 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S +L + ++ G+ E + N Y+ + N Y +E I + + + Sbjct: 301 SESQLKLLGEDLITGRKGEFFIKNPNYLYDGSDEVMAINISYFIEAISVFEASK-----I 355 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ + +++MPM + Sbjct: 356 EIQFNSGN----------VLKLSEPENFDFTHLIMPMSL 384 >gi|225552236|ref|ZP_03773176.1| DNA polymerase III, beta subunit [Borrelia sp. SV1] gi|225371234|gb|EEH00664.1| DNA polymerase III, beta subunit [Borrelia sp. SV1] Length = 385 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 80/399 (20%), Positives = 174/399 (43%), Gaps = 37/399 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + ++ + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQVINEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--------DSNFYLQSFP 114 + ++A YD V+ +I N+ +++ I + + +F Sbjct: 67 TDFKVLINASNFYDAVKAFGFYKKIKIVL-NKNNSKLEIMGELKDEKEEYEDHLKEPTFS 125 Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 E +E+Y + E+ K ++ R F+ +E + LNG++F +ED K Sbjct: 126 YEEIENYNYDMVDEDYTFEIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSK 184 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 185 LLLVSTNGHRMSICKTEVM--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYV 241 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ ++ LI+G +P+Y+++IP + V+ L+ + RV++ + V L+ Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTF 300 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S +L + ++ G+ E N Y+ + N Y +E I+ + + + Sbjct: 301 SELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAINVFETSK-----I 355 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 356 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384 >gi|257469639|ref|ZP_05633731.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185] gi|317063875|ref|ZP_07928360.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] gi|313689551|gb|EFS26386.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185] Length = 363 Score = 177 bits (449), Expect = 3e-42, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 154/389 (39%), Gaps = 32/389 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +++ +L I++ P+ + ++A + L+ + E++ + A Sbjct: 1 MKFSIKREELISILSEYTNILKDNPIKPIVSGLQIKAENNLITFVGTNLEVDHIRKVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + LL + ++ L D I F N I+ + F + E FP Sbjct: 61 VKEEGSLVLKPFLLLEYIKLL-DEEYIEFILNNGF-----ITVHQAEFSI--LEEGTFPV 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + L L+E++ FA + +N + ++ L V+TD +R Sbjct: 113 ITETTPIKLLAITGGELVKLLEKSKFAASLTNDNIQINCVRVIFKLNEINL--VSTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + D + K S +P + I ++L + V + S + L E+ S + Sbjct: 171 LLYMKADKNCHVEKEIS--IPMDTINVICKLLKDSEKEVTIGFSGENVILTWENAYFSSK 228 Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSSDKLC 296 I FP+++ ++ + K + N L+ A+ RV ++ + L Sbjct: 229 TIALPFPDFKGILANNSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKTLL 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + K + +N+ N K+L E IDNIS + V+ S SS Sbjct: 289 INAFSG-KAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVI--------KGSGSS 339 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K + Y+LMP+ + Sbjct: 340 SMFEITET-------GKEDYRYILMPLAL 361 >gi|26553454|ref|NP_757388.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2] gi|26453460|dbj|BAC43792.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2] Length = 378 Score = 176 bits (448), Expect = 3e-42, Method: Composition-based stats. Identities = 86/392 (21%), Positives = 176/392 (44%), Gaps = 29/392 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MKI V ++ ++ L I E + PV L++ ND ++ S I + Sbjct: 7 MKIIVSKTKLINALRLCNSISENIFSSPVFLGTLIEVNDNEIKFTTSNGIISTHSIVAKS 66 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 A++ G I + + I+ KL++ I+ K + +V S DSN + E Sbjct: 67 EDANILEKGRILIKTKPFFAIISKLKN-EMITLEKVDNSVIKVKTSTFDSNINI--MDEE 123 Query: 117 EFPSTKEEEYV-YSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAV 174 ++P+ ++ V K + + +A+ E ++GI F+ + L + Sbjct: 124 QYPNINFSYNDWNQLSISPIVFKKSISKVKYAVNNNKEKINIMSGICFNSISSEKTLEII 183 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATDG++LA + + Q + IV ++ E+L + D+++++ L ES I + + Sbjct: 184 ATDGYKLAHYKFESTPQDFR----IVLDVSLIELLLEIIDFDTNIEIFLFESNIIFKVSN 239 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSD 293 ++ ++I+G++PN +I + ++ ++ L +A++R ++I SS + VKL+ SS+ Sbjct: 240 TIIASKIIEGDYPNVSRIIATPKENKVNISKKTLVEALERGLAISSSEKKSIVKLNFSSE 299 Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 L ++ + D+G + E+++ P I N +LL ++ +D + Sbjct: 300 VLEVSFSSSDLGNSKETVSCKGKVNEPTPISLNNHFLLSLLKTFD-----NDNITVEFSD 354 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S V +R + N +L+P+R Sbjct: 355 SFKPVLLRDE---------KDPNFLQILVPIR 377 >gi|253734730|ref|ZP_04868895.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH130] gi|253727295|gb|EES96024.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp. aureus TCH130] Length = 161 Score = 176 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 14/175 (8%) Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270 +L D+ ++V + + I ++ + +L+DG FP+Y+ V+P + DK L C L+Q Sbjct: 1 MLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQ 60 Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330 A R +I+S+ + + V+L +S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L Sbjct: 61 AFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVL 120 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++++ + + V L S SSV I +A YV+MPMR+ Sbjct: 121 DVLNALKC-----ENVRMMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 161 >gi|256370826|ref|YP_003108650.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM 10331] gi|256007410|gb|ACU52977.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM 10331] Length = 366 Score = 176 bits (448), Expect = 4e-42, Method: Composition-based stats. Identities = 80/388 (20%), Positives = 169/388 (43%), Gaps = 30/388 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ER ++ L A R + ++++ V G LE++ ++ I + A Sbjct: 1 MKFLCERDELASALQAASRALSSRSSL---AGVRWTLRGGELEVEGRESDLAIRSVLGAM 57 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS A L D+VR + Q+ E+ V + G + LQ P E P Sbjct: 58 GTE-GSFQTPASLAVDLVRTMPSD-QVEVVVED---ASVVLRSGRAEVSLQLLPTLELPG 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATDGH 179 E S + ++ L + + A A ++ R + + F + L+L VATDG Sbjct: 113 IGEG-TTPSATVPAAALAQGIRQVAVAAARDDGRDLIYSSMLFSSTNDGLRL--VATDGT 169 Query: 180 RLAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237 RLA+ ++ ++ ++ +++P +AV E+ R+++ + V + E + + ++ Sbjct: 170 RLALRDIANLSVAGSEARDVVIPTRAVRELERLVTGAGVDEIHVGIGERDAVFVVGTTTL 229 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKL 295 + RL+D F +Y+ ++ + K+L ++ +L A+ R+ M+ +++++++ Sbjct: 230 ATRLVDEPFRDYRRLVEATYPKKLLLDRLSLVDAMRRLRRMAKEARNSSSIQMNMTPTAC 289 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++V P +G+ E ++ +N+ I F+ L + +D + D + +N Sbjct: 290 ELSVRIPSVGQVHEVLDANFNDAEFTINFDPDMLADGVDGVEGDV-----IRLEFIEANR 344 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + D Y+LMP+ Sbjct: 345 AACVSSAD---------TREYLYILMPI 363 >gi|134122656|dbj|BAF49632.1| putative DnaN [Microcystis aeruginosa] Length = 209 Score = 176 bits (447), Expect = 5e-42, Method: Composition-based stats. Identities = 54/221 (24%), Positives = 114/221 (51%), Gaps = 20/221 (9%) Query: 171 LCAVATDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSES 226 L ATDGHRLAV + + + ++ +P +A+ E+ R++++K ++ + + +S Sbjct: 1 LEFAATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDS 60 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 ++ + ++ R ++G +P Y +IP S ++ L ++ L + ++ V+++S + V Sbjct: 61 QVIFEMGEQRLTSRKLEGAYPTYNQLIPKSFERSLVLDRKQLIRCLELVAVLSDQKNNLV 120 Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 K SL + +L + V++PD+G A ESM DI FN KYL++ + + +++ Sbjct: 121 KFSLDGENSRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND---- 176 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +L++S V + Y++MP++I Sbjct: 177 -IQMQLNASTQPVIFTP---------LGGLKMTYLVMPVQI 207 >gi|310780294|ref|YP_003968626.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] gi|309749617|gb|ADO84278.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926] Length = 363 Score = 176 bits (446), Expect = 6e-42, Method: Composition-based stats. Identities = 70/389 (17%), Positives = 154/389 (39%), Gaps = 32/389 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V R ++++LL + +I+ + PV L+A +G+ S E +IPA Sbjct: 1 MKIRVNREELIKLLSNLSVVIKENSIKPVISGTKLEAKNGMAVFTGSNLEFSFISSIPAQ 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G L+ + ++ L ++ ++ I + F + E+P Sbjct: 61 IENEGVTVFKIPLILEYIKLL----EVENLDITVSEGKLLIH--RAEFSI--MDWEEYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 K+ E FE+ S + + E+ F+ +N I +D +L ++TD +R Sbjct: 113 IKQPESENIFEVESQEIISAFEKVKFSAFPTADNLAINCIRM--ACDDNELNMISTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + +P ++V I ++L + + + + + MS R Sbjct: 171 LTKYF--LETPCKSKMEVSIPLESVNIICKLLKDSEEKASFGVKNGILTIKKGNSFMSTR 228 Query: 241 LIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSDKLC 296 LI+ FP+Y+ + S K + +N + + ++ +V ++ ++L Sbjct: 229 LIELPFPDYKTIFKNMSYTKNIELNTADFKGSMKKVLTVAKRNIETKNGAIFEFKGNRL- 287 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 ++ + K ++ ++ N K++ + I NI ++ + +S+S Sbjct: 288 ISTVSSGSAKTVQKIDTIKEGEDFKASLNVKFVYDFISNIQ------KNILIKATNSSSM 341 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + N Y+LMP+ + Sbjct: 342 FIME---------EAGNKNYKYILMPLAL 361 >gi|239927656|ref|ZP_04684609.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] gi|291435994|ref|ZP_06575384.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] gi|291338889|gb|EFE65845.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC 14672] Length = 375 Score = 175 bits (445), Expect = 8e-42, Method: Composition-based stats. Identities = 73/391 (18%), Positives = 145/391 (37%), Gaps = 23/391 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +++ E A R + P+ +LL+ + + + E + A Sbjct: 1 MKIRIDQKLFAEAAKRAHRRLPNNPLQPLLGGLLLETDGDSVTLSGFDYETSTRATLAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + VS LL D+ + G + E + ++ + F L + ++P Sbjct: 61 VLETGHVLVSGRLLADVTAAMPTGPVDVVADDQE----LTLAAPGTTFTLPTMDRRDYPE 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF-FHINEEDLKLCAVATDGH 179 + + +V +M +E L G HI + L A+D + Sbjct: 117 LPQAPEAAGTVDGDLLAAAVVHAAQASMPDKEAAGSLEGFRGVHIAADGDHLTVSASDRY 176 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237 R+ + ++VP + + L+ V+VS + + L ++L++ Sbjct: 177 RIVRHRIPWTPDGETADDLLVPAAHLAATCKQLAG--GPVRVSFTNNITVAALANDTLTV 234 Query: 238 SVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + R + FPN N P LR + L +AV R ++++ QA++LS D++ Sbjct: 235 TSRTVATPFPNIDNFFPNPAAASGWLRADAAELLEAVKRAALVNHKEEQAIRLSFDQDQV 294 Query: 296 CMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +T + K ++ + + +L ++ IS +V + N Sbjct: 295 TVT-GGVEGSKGASRVDAEITDLDGFTAGYRPGFLGSLLAPISG------QVQIWFTTPN 347 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V I+ D + + V MP+R+ Sbjct: 348 KPVLIQPVDDEGRVI----DTYRAVCMPVRL 374 >gi|224532178|ref|ZP_03672810.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116] gi|224511643|gb|EEF82049.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116] Length = 386 Score = 175 bits (445), Expect = 9e-42, Method: Composition-based stats. Identities = 86/400 (21%), Positives = 173/400 (43%), Gaps = 38/400 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I + A II +N + +L++ L IK++ I IP + Sbjct: 7 FICETNQITSEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTIPIISE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI----SHGDSNFYLQSFPESEF 118 + ++A YD V+ +I NE +++ I YL E F Sbjct: 67 TDFKVLINASNFYDAVKAFSLYKKIKIVF-NEDNSKLEIMGELKDEKEEEYLDHLKEPTF 125 Query: 119 ---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 E+Y + E+ LK ++ R F+ +E + LNG++F +ED Sbjct: 126 SYEEIENYNYDMINEDYTFEIEVKQKSLKKVISRIAFSAHFDESKNVLNGVYF-TKDEDS 184 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229 KL V+T+GHR+++ + +++ I + + IVP K + L+ L S + VK+ S+ + + Sbjct: 185 KLLLVSTNGHRMSICKTEVI--IEEAVNFIVPVK-IFNFLKHLMSGEGVVKIKSSDKKFY 241 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + ++ ++ LI G +P+Y+++IP + V+ + L+ + RV++ + V L+ Sbjct: 242 VEFDNYKIACSLIIGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVDKSRKLV-LT 300 Query: 290 LSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 S +L + ++ G+ E + N Y+ + N Y +E I + + Sbjct: 301 FSELQLKLLGEDLITGRKGEFFIKNPNYVYDGSDEIMAINISYFVEAISVFETSK----- 355 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +S N K ++ + +++MPM + Sbjct: 356 IEIQFNSGN----------VLKLSEPENFDFTHLIMPMSL 385 >gi|307945020|ref|ZP_07660356.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] gi|307770893|gb|EFO30118.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4] Length = 399 Score = 174 bits (442), Expect = 2e-41, Method: Composition-based stats. Identities = 85/398 (21%), Positives = 166/398 (41%), Gaps = 34/398 (8%) Query: 2 KITVERSDILELLGHACRIIER-KNTIPVSCH--VLLQANDGLLEIKASGPEIEITGAIP 58 +I ++R+D L + +A +I ++ K + + + L + G + A+ + + Sbjct: 20 EIIIDRADFLRAVTNAKQIADKPKPKEAIGPNHYLYLCSTGGGISATATDFDTVTSTLCK 79 Query: 59 ASVDVCGSITVSAHLLYD-IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + + AH L+ I + + TE+ I + + + Sbjct: 80 GDAPQDFFVALPAHQLFGLIAKADPSRNVVLACAPG--ITELTIGAISVDIETPDWSLCD 137 Query: 118 FPSTKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 P F + + VL++ +T +++TEE+RYYL G++ H + K A Sbjct: 138 MPVVAFQHKMVTAETEFLIPTHVLRDAFRKTLPSVSTEEVRYYLRGVYLH--AYNGKFRA 195 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRIH 229 +TDGHRL + E D+ + +P II+P K V E++R+LS S VKV + E+ + Sbjct: 196 ASTDGHRLTIFEDDLPPGVTDIPPIIIPTKGVQEVVRMLSRKGIDASSQVKVIVDEAGVF 255 Query: 230 LNIESLS-MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 ++V+ IDG FP+YQ +IP + + A+ + + V Sbjct: 256 FQFGDYELLAVKAIDGTFPDYQRLIPAMPVNFVSFEAQKMEDALKALLSIKPE-FNRVLC 314 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 S + ++V + K+ S+ P+ I FN +++ +++ I Sbjct: 315 SFEESGIHLSVSTEEGAKSRTSLKANLEGIDPIQIKFNGQFISDLMKLIEG------RAR 368 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D +N V ++ D Y++MP++I Sbjct: 369 VCIDHNNQPVVLQDVSDD---------RMTYLVMPLKI 397 >gi|219684428|ref|ZP_03539372.1| DNA polymerase III, beta subunit [Borrelia garinii PBr] gi|219672417|gb|EED29470.1| DNA polymerase III, beta subunit [Borrelia garinii PBr] Length = 386 Score = 174 bits (441), Expect = 2e-41, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 170/399 (42%), Gaps = 36/399 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQITSEIEKAKGIILNRNMNDIWSALLIEIKRSNLIIKSTDRNIFFESTISIISE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN-------FYLQSFP 114 + ++A YD V+ +I F EN E+ D +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGESQDEKEEKCEDHLKEPTFS 126 Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 E E+Y + EL K ++ R F+ +E + LNG+FF ED + Sbjct: 127 YEEIENYNYDMVNEDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGVFF-TKGEDSQ 185 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYV 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ ++ LI G +P+Y+++IP + + V+ + L+ + RV++ + + + L+ Sbjct: 243 EFDNYKIACSLISGNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYV-DKSKKLILTF 301 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S +L + ++ G+ E + N Y + N Y +E I + + + Sbjct: 302 SELQLKLLGEDLITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAISVFETSK-----I 356 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 385 >gi|296327521|ref|ZP_06870067.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] gi|296155347|gb|EFG96118.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. nucleatum ATCC 23726] Length = 364 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 73/390 (18%), Positives = 167/390 (42%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L +G I+F K++ + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIKLL-EGENINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + + +E+ F ++ N I + L+L V+TD Sbjct: 113 LTEIIPIVIASENTVKFTMSLEKVKFLTNSSTSTDTLFNSIKMIFKDNVLEL--VSTDSF 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + ++ I K ++VP ++ + +I D ++ S+ ++ + + + Sbjct: 171 RLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAYFTC 228 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK N L A+ +V + SS + ++L Sbjct: 229 KLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ + IDN+ + ++D ++NS Sbjct: 289 LISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDNVDKNIIID--------ATNS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ N Y++MP+ I Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362 >gi|19703952|ref|NP_603514.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] gi|19714128|gb|AAL94813.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. nucleatum ATCC 25586] Length = 364 Score = 174 bits (441), Expect = 3e-41, Method: Composition-based stats. Identities = 74/390 (18%), Positives = 167/390 (42%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L +G I+F K++ + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIKLL-EGENINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179 E + + +E+ F + L N I + L+L V+TD Sbjct: 113 LTEIIPIVIASENTVKFTMSLEKVKFLTNSSASTDTLFNSIKMIFKDNVLEL--VSTDSF 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + ++ I K ++VP ++ + +I D ++ S+ ++ + + + Sbjct: 171 RLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAYFTC 228 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK N L A+ +V + SS + ++L Sbjct: 229 KLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ + IDN+ + ++D ++NS Sbjct: 289 LISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDNVDKNIIID--------ATNS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ N Y++MP+ I Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362 >gi|51598692|ref|YP_072880.1| DNA polymerase III, subunit beta [Borrelia garinii PBi] gi|51573263|gb|AAU07288.1| DNA polymerase III, subunit beta [Borrelia garinii PBi] Length = 386 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 84/399 (21%), Positives = 170/399 (42%), Gaps = 36/399 (9%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 E + I + A II +N + +L++ L IK++ I I + Sbjct: 7 FICETNQITSEIEKAKGIILNRNMNDIWSALLIEVKRSNLIIKSTDRNIFFESTISIISE 66 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN-------FYLQSFP 114 + ++A YD V+ +I F EN E+ D +F Sbjct: 67 TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGEAKDEKEEKCEDHLKEPTFS 126 Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 E E+Y + EL K ++ R F+ +E + LNGI+F ED K Sbjct: 127 YEEIENYNYDMVNEDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGIYF-TKGEDSK 185 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230 L V+T+GHR+++ + +++ + + + IVP K + L+ L S + VK+ S+ + ++ Sbjct: 186 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYV 242 Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ ++ LI G +P+Y+++IP + + V+ + L+ + RV++ + + + L+ Sbjct: 243 EFDNYKIACSLISGNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYV-DKSKKLILTF 301 Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 S + + ++ G+ E + N Y+ + N Y +E I + + + Sbjct: 302 SELQFKLLGEDLITGRKGEFFIKNPNYLYDGSDEVVAINISYFIEAISVFETSK-----I 356 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +S N K ++ N +++MPM + Sbjct: 357 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 385 >gi|197294171|ref|YP_001798712.1| DNA polymerase III beta subunit [Candidatus Phytoplasma australiense] gi|171853498|emb|CAM11337.1| DNA polymerase III beta subunit [Candidatus Phytoplasma australiense] Length = 378 Score = 173 bits (440), Expect = 3e-41, Method: Composition-based stats. Identities = 76/377 (20%), Positives = 167/377 (44%), Gaps = 21/377 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M + + + L+ L +I+ +K+ PV + + A L ++ + I I +I Sbjct: 1 MYLEINKDVFLKQLLKIYKILPQKSLFPVFNILKITAKKNTLILEVNNGNIAIQISIEDQ 60 Query: 59 -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ G I +I++K+ + EN + I + L+ Sbjct: 61 SLKIEKEGEIACFGRHFIEIIKKINTLSIKMTVTENNF---LVIKTNFCEYKLKLMTLLG 117 Query: 118 FP-STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 F E FEL S K +++ + + + E R L G ++ LK A+AT Sbjct: 118 FLLPEFFFEKKEFFELKVSSFKKMIKEVNISSSKNEKRPILTGSNLIYEKKTLK--ALAT 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235 D R++ ++ + ++++P K++ E+++IL D+ ++K+ + +I L I++L Sbjct: 176 DSFRISYKKIKLDFPYFD-FNMVIPNKSLEELIKILEYYDNKNLKIYSDDKKIFLKIDNL 234 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSS 292 L++G +P Q + + +N ++ + ++R+S+ V V L+ Sbjct: 235 WFCTSLLEGNYPQIQEFNLKNYPFVVHLNKDDVMKVLERISLFFSKEEVNKNIVLFKLTE 294 Query: 293 DKLC-MTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 +K+ +++ N ++G A+E + + +I FN K+L +I+ ++S E+VF Sbjct: 295 EKIIEISISNENLGTALEKIIPLKVTSEKFEIAFNAKHLEDILKVLTSS-----EIVFYF 349 Query: 351 DSSNSSVFIRGKDKDSK 367 +S + +++S Sbjct: 350 ESHLKPFIVTTLEEESS 366 >gi|253584029|ref|ZP_04861227.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium ATCC 27725] gi|251834601|gb|EES63164.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium ATCC 27725] Length = 363 Score = 172 bits (437), Expect = 7e-41, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 153/389 (39%), Gaps = 32/389 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +++R +++ +L I++ P+ + ++A L+ + E++ + A Sbjct: 1 MKFSIKREELISILSEYTNILKENPIKPIVSGLQIKAESNLITFVGTNLEVDHIRKVEAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V GS+ + LL + ++ L D I F N T + + F + E FP Sbjct: 61 VKEEGSLVLKPFLLLEYIKLL-DEEYIEFILNNGFITVHH-----AEFSI--LEEGTFPI 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + + L+E++ FA + +N + ++ L V+TD +R Sbjct: 113 ITETTPIKLLSINGGEFVKLLEKSKFAASLTSDNIQINCVRAIFKLNEINL--VSTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L + + + K S +P + I ++L + V + S I L E+ S + Sbjct: 171 LLYLKNEKNCHVEKEIS--IPMDTINVICKLLKDSEKEVIIGFSGENIILTWENAYFSSK 228 Query: 241 LIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSSDKLC 296 I FP+++ ++ S K + N L+ A+ RV ++ + L Sbjct: 229 TIALPFPDFKGILANSSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKTLL 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + + K + +N+ N K+L E IDNIS + V+ SN+S Sbjct: 289 INAFSG-KAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVI--------KGSNAS 339 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K + Y+LMP+ + Sbjct: 340 SMFEITE-------IGKDDYKYILMPLAL 361 >gi|237744670|ref|ZP_04575151.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] gi|229431899|gb|EEO42111.1| DNA polymerase subunit III [Fusobacterium sp. 7_1] Length = 364 Score = 172 bits (436), Expect = 8e-41, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 166/390 (42%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ I N + + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIK------LIEEENINFEKKDGYLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + + L+E+ F ++ + N I + L+L V+TD + Sbjct: 113 LTEIIPIVVATENTLKFTILLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VSTDSY 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + + ++VP ++ I +I D ++ S+ R+ L + S Sbjct: 171 RLVYMKKTLNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDAYFSC 228 Query: 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK+ N L A+ +V + S+ + ++L Sbjct: 229 KLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E IDN+ + +++ ++NS Sbjct: 289 VISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIIIE--------ATNS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ ++ N Y++MP+ I Sbjct: 340 SSMLRFMEERNE-------NYIYLIMPVNI 362 >gi|213421124|ref|ZP_03354190.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 157 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 14/168 (8%) Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 +V + + I ++ + +L+DG FP+Y+ V+P + DK L C L+QA R +I Sbjct: 4 PARVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAI 63 Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 +S+ + + V+L +S ++L +T +NP+ +A E ++V Y M+I FN Y+L++++ + Sbjct: 64 LSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALK 123 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V L S SSV I +A YV+MPMR+ Sbjct: 124 C-----ETVRIMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 157 >gi|260494531|ref|ZP_05814661.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] gi|260197693|gb|EEW95210.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33] Length = 364 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 162/390 (41%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ I N + + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIK------LIEEENINFEKKDGYLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + + L+E+ F ++ + N I + L+L V+TD + Sbjct: 113 LTEIIPIVVTTENTLKFTILLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VSTDSY 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + + ++VP ++ I +I D ++ S+ R+ L + S Sbjct: 171 RLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDAYFSC 228 Query: 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK+ N L A+ +V + S+ + ++L Sbjct: 229 KLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E IDN VD ++ +S+S Sbjct: 289 VISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDN------VDKNIIIEATNSSS 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I ++ + Y++MP+ I Sbjct: 342 MLKI---------MEEGNEDYIYLVMPVNI 362 >gi|254304259|ref|ZP_04971617.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] gi|148324451|gb|EDK89701.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium nucleatum subsp. polymorphum ATCC 10953] Length = 364 Score = 171 bits (434), Expect = 2e-40, Method: Composition-based stats. Identities = 77/390 (19%), Positives = 170/390 (43%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ R +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINRQKTIEIIGEYSNILKDNPVKPSLVGLFIQAKNNQVVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L +G I+F +++ + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIKLL-EGENINFERKDG-----YLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179 E + + +E+ F + L N I + L+L V+TD Sbjct: 113 LTEIIPIVIASENTVKFTMSLEKVKFLTNSSASTDTLFNSIKMIFKDNILEL--VSTDSF 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + ++ I K I+VP ++G + +I D ++ S+ R+ + + + Sbjct: 171 RLIYMKKELNNTINK--DILVPGDSIGVLYKIFKDLDEEFSLAASDDRLIVTWKDAYFTC 228 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++++I ++DK N L A+ +V + SS + ++L Sbjct: 229 KLLSLSFPDFRSLINNTNHDKRFEFNREELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + + N KY+ E IDN+ + ++D ++NS Sbjct: 289 LISGVSAN-AKINQKVNMIKSGEDLKLGMNCKYIKEFIDNVDKNIIID--------ATNS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ N Y++MP+ I Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362 >gi|255039230|ref|YP_003089851.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] gi|254951986|gb|ACT96686.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053] Length = 382 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 76/386 (19%), Positives = 157/386 (40%), Gaps = 20/386 (5%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 +VE +D+ L +++ IP+ ++L L + S + +I A Sbjct: 11 SVETADLKRALHLFAKVVREAPLIPILDNILFSFELDELHLTGSNLITTVFTSIQADGSS 70 Query: 64 C-GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPST 121 G + + +V G E+E GTEV ++ F S + Sbjct: 71 TVGKFLLPYRQIKALVSLSPAGKIAFRAVESEDVGTEVMVTTEYGEFKFSSLEKIGDYPA 130 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + F + L+ ++ T ++T+E+R L GI+F E +K ++TDGH+L Sbjct: 131 LSWSPISHFNIGMDELREGMKLTRKTVSTDELRPPLTGIYFDTAEGCIKF--ISTDGHKL 188 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS-LSESRIHLNIESLSMSVR 240 E + + I+P ++ + K ++V L +++ N S + VR Sbjct: 189 TKYETS-EPAVESILPFILPANFADFVISNTALKQNAVSFGCLPGAKVVANFGSCVVLVR 247 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ID FPNY+ IP + + ++++ ++ + + S+ + S+ +L + + Sbjct: 248 CIDEFFPNYKAAIPEAFEHAVQLDLAQIKTRIQLGLLFSNRATTQMAFVFSNGRLSLESE 307 Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + D G K+ +S+ + + I FN +++ I+ S +V + + N Sbjct: 308 DFDYGMKSKQSLEMEQPVPELKIGFNVRFMSTILAPFSG------KVTLLMSAPNKPAVF 361 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 + K K+ + +LMP+ + Sbjct: 362 IPQAKFGKSVQL-------LLMPVML 380 >gi|256026449|ref|ZP_05440283.1| DNA polymerase III, beta chain [Fusobacterium sp. D11] gi|289764461|ref|ZP_06523839.1| DNA polymerase subunit III [Fusobacterium sp. D11] gi|289716016|gb|EFD80028.1| DNA polymerase subunit III [Fusobacterium sp. D11] Length = 364 Score = 171 bits (433), Expect = 2e-40, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 162/390 (41%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ I N + + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIK------LIEEENINFEKKDGYLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E + + L+E+ F ++ + N I + L+L V+TD + Sbjct: 113 LTEIIPIVVATENTLKFTILLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VSTDSY 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + + ++VP ++ I +I D ++ S+ R+ L + S Sbjct: 171 RLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDAYFSC 228 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK+ N L A+ +V + S+ + ++L Sbjct: 229 KLLSLNFPDFRPLINNTNHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E IDN VD ++ +S+S Sbjct: 289 VISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDN------VDKNIIIEATNSSS 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I ++ + Y++MP+ I Sbjct: 342 MLKI---------MEEGNEDYIYLVMPVNI 362 >gi|237742193|ref|ZP_04572674.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|256845466|ref|ZP_05550924.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] gi|229429841|gb|EEO40053.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13] gi|256719025|gb|EEU32580.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2] Length = 364 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 167/390 (42%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L + I+F K++ + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIK-LVEEDNINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179 E + + +E+ F + L N I + L+L V+TD Sbjct: 113 LTEIIPIVIATENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNILEL--VSTDSF 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + ++ I K I+VP ++ I +IL D ++ S+ ++ + + + Sbjct: 171 RLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVTWKDAYFTC 228 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK N L A+ +V + SS + ++L Sbjct: 229 KLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E IDN+ + +++ ++NS Sbjct: 289 VISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNLIIE--------ATNS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ N Y++MP+ I Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362 >gi|65319987|ref|ZP_00392946.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bacillus anthracis str. A2012] Length = 236 Score = 170 bits (432), Expect = 3e-40, Method: Composition-based stats. Identities = 61/250 (24%), Positives = 120/250 (48%), Gaps = 22/250 (8%) Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 + ++T FA+A E R+ L G+ + + KL ATD HRLA+ E I + + Sbjct: 3 DAFKQTVFAVAKNESRHVLTGVHIEL--DHNKLICAATDSHRLAIRETLISTNM--KANC 58 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 IVP + E+L++++S V + LSES I + ++ RLI+G++PN +IP Sbjct: 59 IVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIEGKYPNISTLIPNEFQ 118 Query: 259 KELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL-SSDKLCMTVDNPDMGKAIE--SMNVY 314 + ++ + Q VDR S+++S V L + + + ++ + +GK E ++V Sbjct: 119 TVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQISSNASQIGKISEKQQIDVI 178 Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 + ++I F+ +++L+ + I ++ V S + I + + Sbjct: 179 QGKKQLNISFDGRFMLDALRAIK-----EETVTLSFSGSMRPILIEAGTQSA-------- 225 Query: 375 NAFYVLMPMR 384 A +++ P+R Sbjct: 226 -AIHLISPVR 234 >gi|294785230|ref|ZP_06750518.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] gi|294486944|gb|EFG34306.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27] Length = 364 Score = 170 bits (430), Expect = 5e-40, Method: Composition-based stats. Identities = 75/390 (19%), Positives = 169/390 (43%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +E++G I++ P + +QA + + K + EIE+ Sbjct: 1 MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G + + LL + ++ L + I+F K++ + ++ F + ++ +P Sbjct: 61 IESEGQVLIKPALLLEYIK-LVEEDNINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179 E + + +E+ F + L N I + L+L V+TD Sbjct: 113 LTEIIPIVIATENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNILEL--VSTDSF 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + ++ I K I+VP ++ I +IL D ++ S+ ++ + + + Sbjct: 171 RLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVTWKDAYFTC 228 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I ++DK N L A+ +V + SS + ++L Sbjct: 229 KLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E IDN+ + +++ ++NS Sbjct: 289 VISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIIIE--------ATNS 339 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S +R ++ ++ N Y++MP+ I Sbjct: 340 SSMLRFMEERNE-------NYIYLIMPVNI 362 >gi|168704010|ref|ZP_02736287.1| DNA polymerase III subunit beta [Gemmata obscuriglobus UQM 2246] Length = 366 Score = 168 bits (426), Expect = 1e-39, Method: Composition-based stats. Identities = 73/362 (20%), Positives = 146/362 (40%), Gaps = 18/362 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T++R + LL A + + T PV V + +DG + + A+ E+ +TG A Sbjct: 1 MNLTIDRDTLAGLLRTAAPAVPSRTTAPVLRCVKVTTSDGSVSVSATNTELFVTGRATAE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A ++ V+ G G + + ++ L + S+FP Sbjct: 61 TGKPGSLCVPADVIQSAVKLAPSGPVSIVS-----GARAELKYAGGSYKLNTEDVSKFPE 115 Query: 121 -TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E SFE+ + L + R F + + +G++ + + + AVATD Sbjct: 116 WVPPELQGVSFEIDAPALVRCLTRVAFCCSERVESFTTSGVWLEVA--NGEFNAVATDSI 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL +A + + S +VP V + S + V V++ S + +SLS++ Sbjct: 174 RLGIATAKVADGV--QASALVPAPTVQAVKAAFSGRTGPVTVTVWGSTVRFADDSLSIAS 231 Query: 240 RLIDGEFPNYQNV--IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 L+ G+F ++ + + + + L +AV R ++ + AV L+ L + Sbjct: 232 PLLTGKFAPWRMLEQKVKPHGTTFVDDPSALLRAVRRATVTADAADTAVVLTGEGPTLTL 291 Query: 298 TVDNPDMGKAIESMNVYYNE---CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +G+ + + K L + + +SD V + + F ++ Sbjct: 292 KAAGA-VGEGEVEHVCKSQSGVASAVTTKMDPKNLTDALALAASDGV--ESITFAFEARK 348 Query: 355 SS 356 ++ Sbjct: 349 AA 350 >gi|134096941|ref|YP_001102602.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] gi|291006617|ref|ZP_06564590.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] gi|133909564|emb|CAL99676.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL 2338] Length = 364 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 76/359 (21%), Positives = 133/359 (37%), Gaps = 25/359 (6%) Query: 28 PVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87 PV ++L A LE+ + E I + A G I V A L + +R L D ++ Sbjct: 30 PVLAGMVLTATPQGLELAGTDRERGIRLSRRARTHAEGRILVPARPLAETLRNL-DSVEV 88 Query: 88 SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147 E G ++ + ++ F L + P + A+ + V A Sbjct: 89 RLVVE---GAKLALRTRNARFALPLLDLAAHPGVRAAPPRAGALDAALLPAVAVV--AAA 143 Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 + ++ G+ H+ + +L TD R+AVA + + ++VP + E Sbjct: 144 TSRDDALPVFTGV--HVKQRGERLVLAGTDRFRMAVATLPWRPGTDDL-DVLVPSGLLTE 200 Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267 + + S + V + R+ L+ +S L+D FP+ + D + V Sbjct: 201 VAKQASGDE--VMLRADADRVGLSWADAEVSTTLLDAPFPDESRHLLPEVDCAVEVRADE 258 Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327 + AV RVS + AV L + ++ + +P G A E++ F + Sbjct: 259 VAGAVRRVSPYAGAH-GAVVLDVGDAEVRVRAADPQFGDAQEAVKATVTGDRFSPAFQPR 317 Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSS-NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 YL + + + V L S S I D + + YVLMP RI Sbjct: 318 YLADALQAFAGRT-----VRMGLRSGLRRSTVISDVDAP-------EADLRYVLMPKRI 364 >gi|229496336|ref|ZP_04390056.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC 35406] gi|229316914|gb|EEN82827.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC 35406] Length = 392 Score = 167 bits (423), Expect = 3e-39, Method: Composition-based stats. Identities = 69/399 (17%), Positives = 159/399 (39%), Gaps = 27/399 (6%) Query: 1 MKITVERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ + ++ LL + +++ N +PV + L + D L + S + G +P Sbjct: 1 MQFKIASGELSTLLQNQSKVVPTVYNEMPVLTYFLFEIQDNNLYVTGSDGMMRSRGVLPV 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS--FPES 116 + + + V + + V+ L D + ++ + G F Sbjct: 61 ITSEGNATFAVHPKDILEYVKGLPDQPLLFDYEAETSTLLMTFEGGYIRFATSDGELYPK 120 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + +E E + +++S ++ ++ T +MA + R L + F + L + A +T Sbjct: 121 DDKDREEAETAHVATMSASAMRRGLDLTIGSMAEDARRPILASVCFDFKAKYLAMVATST 180 Query: 177 D----GHRLAVAEVDIVAQIA----KMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESR 227 + V + IV +P+K + +L+S D V +S ++ + Sbjct: 181 EILTKYTDSTVVDPSIVEPADVRVQSPYQFCLPQKMANFLRALLASFTDEEVTLSHTDRK 240 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-- 285 + ++ S RL++G +P Y +VIP N + + A+ R++ S Sbjct: 241 AFFKVGNIEASTRLVEGRYPPYDSVIPRDNPHRISIEGRLFVPAIKRMNSFMSSPNHPLV 300 Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDD 344 +++S+ + + +++D D+ +A + + + M + F + +I+ I S Sbjct: 301 MQMSIEGNLMTVSMDVQDVRQAEQRFPIENPSNLSMKLRFKVHSFIALINTIESS----- 355 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +VF + ++ ++ I + N V+MP+ Sbjct: 356 NIVFEIADASRAMVIIPSENPKDTELTN------VIMPI 388 >gi|156564023|ref|YP_001429765.1| DNA-directed DNA polymerase III beta chain [Bacillus phage 0305phi8-36] gi|154622720|gb|ABS83600.1| DNA-directed DNA polymerase III beta chain [Bacillus phage 0305phi8-36] Length = 361 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 68/347 (19%), Positives = 135/347 (38%), Gaps = 17/347 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58 MK+ V ++ + L I + + + A +++ + +P Sbjct: 1 MKVDVALDELKKGLQVVKDTIGTET--QGHEGIKIYASKKTNRIKLTTTDGSNTTEVWVP 58 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 A V G V A V KL D + F G ++ S+ E F Sbjct: 59 AGVKETGKFVVKAKKFIAYVSKL-DVQTVMFAISKGGGLQLKTKPAKGQQTFISYQEESF 117 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAM--ATEEIRYYLNGIFFHINEEDLKLCAVAT 176 P T + + +SF+++ V K L+ FA + E R L GI F + LKL +T Sbjct: 118 PKTPKLQSKFSFDMSGLVFKKLINNVAFAADSSREASRPILQGIQFVSDGNLLKL--TST 175 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG +A + I + ++++ +K++ ++++ + + + + + Sbjct: 176 DGFTIANYKRKIKS---DPFNVVLGKKSLVNCAKVVADDEKVTMQACENNHFIVKTGLAT 232 Query: 237 MSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + + G FPN NV+P D + + L +DR SIM L K+ Sbjct: 233 YHLPTLAGNFPNTDNVLPGKEFDLQFLADRDELLGLLDRASIMIDGSG---ILQFEKGKV 289 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +T ++ + G E + ++ + K +++++ +I SD + Sbjct: 290 TLTGNSQE-GNFSEFIMTKLQGEATEVSVSVKRIIDVVKHIDSDMIT 335 >gi|89097418|ref|ZP_01170307.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] gi|89087714|gb|EAR66826.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911] Length = 392 Score = 166 bits (422), Expect = 3e-39, Method: Composition-based stats. Identities = 78/401 (19%), Positives = 147/401 (36%), Gaps = 42/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCH--VLLQANDGLLEIKASGPEIEITGAIP 58 M+ V I E + A RI ++ V+++A+ G L + + + + P Sbjct: 1 MEFKVNGESIFESISEAARIAGGSHSA---AGKLVMIEAHSGGLSVSSGNGDRSVIFEHP 57 Query: 59 A--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY- 109 + G + +L +++RK+ I ++ I+ D Sbjct: 58 LINCRDSGLDILEYGKLAADGRMLSEVIRKIPGRLSIKAST----SHKILINSMDKQISA 113 Query: 110 -LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 + FP +FP E+ Y + L +S L + T + A R L GI +E Sbjct: 114 AIAGFPLDQFPDRAHVEFPYIYPLEASDLAAGLRNTAASAAKTSSRPILEGINLAFDENG 173 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR 227 L ATD RLA S +P + E+L+++ S + +S+S+ Sbjct: 174 LTF--TATDSSRLA--MWKADGSAGFSQSFTLPARNAAELLKLIGKSPSGEAAIYISDSQ 229 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAV 286 + L+ G FP+ + + P EL +N +L Q V R I + + V Sbjct: 230 AVFATSTFRFCSSLLTGRFPSSEKLKPEGCKTELVINRKHLLQGVKRTMIFAGEKRSSLV 289 Query: 287 KLSLSS-DKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + + + ++ +MG E + E N YL + + I ++ Sbjct: 290 SIQAKDENSITISSPMSEMGMIEEVQELQSIRGETEASAVINGSYLADAL--IGTE---S 344 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + RL + + I + N F+++ P+R Sbjct: 345 EYIKIRLYGTMKPILISSP---------GEANYFHLISPVR 376 >gi|323486044|ref|ZP_08091375.1| DNA polymerase III [Clostridium symbiosum WAL-14163] gi|323400611|gb|EGA92978.1| DNA polymerase III [Clostridium symbiosum WAL-14163] Length = 349 Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 68/386 (17%), Positives = 153/386 (39%), Gaps = 39/386 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++++++ L ++ +K T+P+ +L +G L A+ E+ I + + Sbjct: 1 MK--IQKTELAAKLNQIKGVVPKKTTMPILQGIL--VKEGYLI--ANNLEMTIKAKLEGT 54 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D C + D++ L DG G + I Q+ FP Sbjct: 55 EDEC--FIIPERAF-DLINNLPDGEIDITIS---GGNTMTIKADKIKNKYQTMDPGPFPV 108 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E F + + +L V R +A+ + ++ + +D +L V DGH Sbjct: 109 SDIEGEGSEFTIKAGLLLESVRRVSYAIPQQGGNATMS--TMCLQAKDGQLNFVGLDGHV 166 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LA ++D + +++P+ + ++ + + D +++ S + + + R Sbjct: 167 LAWDKIDYDGE----FELLIPKNTIDKLKTLGLTGD--IRIRRSNAMAVFATKDFEICTR 220 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 L+ GE+ YQN+ ++ L A+ R + ++ + VK LS +L +++ Sbjct: 221 LVQGEYYKYQNMF-KELPLHTVISRKELLDAMVRAKMCTAEK-CPVKFELSGSQLNLSIK 278 Query: 301 NPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + E++++ + + I F+ + ++E + D V L + + Sbjct: 279 DQTT-DYHETVDLQEDISEELTIGFDARLVIETLKAFDC-----DNVGISLQGPKMPMIV 332 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +D D K +++P+ I Sbjct: 333 EAEDSDFKT----------IVLPVAI 348 >gi|183983898|ref|YP_001852189.1| DNA polymerase III (beta chain) DnaN_1 [Mycobacterium marinum M] gi|183177224|gb|ACC42334.1| DNA polymerase III (beta chain) DnaN_1 [Mycobacterium marinum M] Length = 380 Score = 166 bits (422), Expect = 4e-39, Method: Composition-based stats. Identities = 58/346 (16%), Positives = 125/346 (36%), Gaps = 11/346 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK + + E + A + + + VL++A G + + T A Sbjct: 1 MKFVINSGTLAETIAAAISSLPTRPAASILGGVLVEAQLGTVTFSSFNYNRATTRLTAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V ++ V+ LL + L G + N E+ I+ + F L +++P Sbjct: 61 VADTDTVVVAGRLLAAVGANLPKGPECQVTVGN---AEMVIATPRTEFRLPVLHATDYPR 117 Query: 121 TKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + V +T+ + + ++LC ATD + Sbjct: 118 LPVMGSEDAIGCVNAESFSEAVHVIGRFASTDALPAEFTALNIDCRPGQMRLC--ATDRY 175 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMS 238 +A E++ A +I VP + ++ S +++ + + + L S ++ Sbjct: 176 MIARREIEWTG--AGEANINVPAADLLATIKAASGNGAEPIEILWNGATLGLRTPSTTVI 233 Query: 239 VRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 R++D EFPN V+ + + V L + R + ++ + + ++++SD L Sbjct: 234 TRVLDEEFPNVDRVLSLKSPFHAAVTVPTAELASTLKRAASIADDQNAQIDVAINSDTLS 293 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +T G E++ + I + + L + I V Sbjct: 294 VTTTQSTAGNIDETVAAVQHGGDRKIALSSRRLHNTLSAIDDPNVT 339 >gi|163737540|ref|ZP_02144957.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107] gi|161389066|gb|EDQ13418.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107] Length = 378 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 81/389 (20%), Positives = 155/389 (39%), Gaps = 32/389 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + V+ S++ L ++ E + IP+ L Q G L I A+ + E + Sbjct: 16 LKVDISELRAALAWVNKVRETWSRIPILSQNLFQVEGGQLAITATCLDREARQTLSCDTS 75 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 S ++ H + + L I +L T ++G S P ++P+T Sbjct: 76 DAWSFVMNGHRVMKVTAGLSGTVTIEHDIAKDLLT--LTANGMSLAMNVMAPPEDWPTTN 133 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 ++E + E+ + L + ++TEE RYYLNGI++ D V T+GHRLA Sbjct: 134 KQEPLGGIEVGENTLLRALNLVKSCISTEETRYYLNGIYW--TSHDGASRMVTTNGHRLA 191 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-----SESRIHLNIESLS 236 +++ +I PR + + +L+ + + K++ + + + + + Sbjct: 192 RLDLEAPNP---PFDVIFPRIGITPLAAMLTANGNQLAKITYRGADKTPTLLSIEMGDRE 248 Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 + +LIDG +P+Y VIP + ++ + + A R+ +M+ K+S + Sbjct: 249 LHCKLIDGTYPDYNRVIPSVDGEQA-FDIIIPKSATQRLRLMAGPHDLGCKISPEKGTMT 307 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + ++ D GK + P DI FN YL + + R + + Sbjct: 308 IGREDHD-GKMSVTYAAKGKSGP-DIGFNTLYL-------AQTTATMGNIRLRAKDNGAP 358 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + VLMPMR+ Sbjct: 359 AL---------ATSEAHTDLIMVLMPMRV 378 >gi|261884881|ref|ZP_06008920.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 304 Score = 166 bits (421), Expect = 5e-39, Method: Composition-based stats. Identities = 69/317 (21%), Positives = 150/317 (47%), Gaps = 15/317 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 M + ++ + + ++ + ++K+ +S H+ L A DG+L IKA+ EI + + A Sbjct: 1 MIVLIKNNVLESIVINTNPYRDKKDLSSISSHIFLSARDGVLNIKAADNEIGLEYKVKNA 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 ++ G T + L DI++ L+DG + +N + I +S + L +FP Sbjct: 61 TIADEGMATANGKKLLDIIKSLKDGDIMLETIQNH----LYIKQNNSKYRLPMQKPEDFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E F++ + L +++ ++ + L G I ++ + L V TD Sbjct: 117 EFPSLENKKKFDINAGSLSKSLKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTK 174 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL+V +++I +Q SII+P+KA+ EI ++ ++++ E+ ++ Sbjct: 175 RLSVYQLEINSQ-NDPFSIIIPKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFT 230 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 +LI+G +P+Y V+P + + +N + + + +S++S VK++++ D + Sbjct: 231 KLINGRYPDYTRVVPNEIKQNIILNREKIIEGIKTISMLSE----IVKITIAPDNISFER 286 Query: 300 DNPDMGKAIESMNVYYN 316 N D +A + ++ Sbjct: 287 INDDYSEAKTIIRIFKE 303 >gi|262067571|ref|ZP_06027183.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] gi|291378686|gb|EFE86204.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC 33693] Length = 364 Score = 166 bits (420), Expect = 6e-39, Method: Composition-based stats. Identities = 67/390 (17%), Positives = 162/390 (41%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +++ ++ I++ P + ++ + + K + E+E+ + Sbjct: 1 MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++V G + + LL + ++ I N + + ++ F + E+ +P Sbjct: 61 IEVEGQVLIKPSLLLEYIK------LIESENINLEKKDGYLIVNNAEFSI--LDETTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 KE + + L+E+ F ++ + N I + ++L +TD + Sbjct: 113 IKEVPSTTIAKENGIQVAMLLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIEL--ASTDSY 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + + K I+VP ++ I +IL + V ++ E ++ + + S Sbjct: 171 RLIYFKKQLENMVNK--DILVPGDSISVIYKILKDLNEDVSLATCEDKLIITWKDAYFSC 228 Query: 240 RLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I S +DK+ N L ++ +V + S+ + ++L Sbjct: 229 KLLSLTFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + + + K + +N+ + + N KY+ E +DN D ++ +S+S Sbjct: 289 LINGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDN------TDKNIIIEATNSSS 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I + + N Y++MP+ I Sbjct: 342 MLKIVEETNE---------NYIYLVMPVNI 362 >gi|269123356|ref|YP_003305933.1| DNA polymerase III, beta subunit [Streptobacillus moniliformis DSM 12112] gi|268314682|gb|ACZ01056.1| DNA polymerase III, beta subunit [Streptobacillus moniliformis DSM 12112] Length = 371 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 79/387 (20%), Positives = 161/387 (41%), Gaps = 27/387 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 I + R + L+ + I ++ + ++ D L +KA G + I +P + Sbjct: 3 NIRLNRKEFLKKIQIVENAIVDDKANGINSGIFIETLDDKLLLKAMGEGLYIKAEMPCEI 62 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + L+ + +++L +I KE + S F + + + P Sbjct: 63 VEKGEFIIKHKLMEEFLKQL--DQEIIEIKEVNGKISIISGKSSSEFSIYEYEKRNEPYI 120 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 F L N +ER FA R +N I F I ++L L VA+D HRL Sbjct: 121 ---TNGLEFSFKREELLNDLERVKFAAYLNLDRLAVNCIRFEI--DNLGLKFVASDAHRL 175 Query: 182 AVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSES-RIHLNIESLSMSV 239 + + + SI +P ++V + +IL + V SE RI + + + Sbjct: 176 IFLDKKFEEKANIETLSISIPLRSVNSLSKILKIMEDEVLTFKSEGTRILFKFKDVEILT 235 Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L++ ++P+Y++++ N+K+ +N +L + RVS+ ++ + + ++L Sbjct: 236 KLVEMQYPDYKSLLNSVRNNKKALLNTRDLTSILKRVSVFVKDNNDKKDIAIFKFNDNQL 295 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 + N D+ + E +N Y + I N +Y+L+ + IS V++ ++ + Sbjct: 296 EVVGSN-DLAVSQEKINCIYEGDNLKIALNVRYILDYLLTISESTVLE----MKMFDERT 350 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMP 382 V + N +N + Y++ P Sbjct: 351 PVLL---------NVENSTESIYLVAP 368 >gi|294782354|ref|ZP_06747680.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] gi|294480995|gb|EFG28770.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA] Length = 364 Score = 165 bits (418), Expect = 1e-38, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 170/390 (43%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +++ ++ I++ P + ++ + + K + E+E+ + Sbjct: 1 MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++V G + + LL + ++ L + I+F K++ + ++ F + E+ +P Sbjct: 61 IEVEGQVLIKPSLLLEYIK-LVESENINFEKKDG-----YLIVNNAEFSI--LDETTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 KE + S NL+E+ F ++ + N I I +D + +TD + Sbjct: 113 IKEVVSTTIAKENSQKFSNLLEKVKFLTNSSSNLDALFNSI--KITFKDNFVELASTDSY 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + ++K I+VP ++ I +IL + V ++ SE ++ + + S Sbjct: 171 RLIYLKKPLENVVSK--DILVPADSMAVIYKILKDLNEDVTLATSEDKLIVTWKDAYFSC 228 Query: 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP++ +I ++DK+ N L ++ +V + S+ + ++L Sbjct: 229 KLLSLSFPDFIPLITNPNHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKGNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E +DN D ++ +S+S Sbjct: 289 LISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDN------TDKNIIIEATNSSS 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I + + + Y++MP+ I Sbjct: 342 MLKIVEEANE---------DYIYLVMPVNI 362 >gi|257463320|ref|ZP_05627717.1| DNA polymerase III, beta chain [Fusobacterium sp. D12] gi|317060897|ref|ZP_07925382.1| DNA polymerase subunit III [Fusobacterium sp. D12] gi|313686573|gb|EFS23408.1| DNA polymerase subunit III [Fusobacterium sp. D12] Length = 365 Score = 164 bits (416), Expect = 2e-38, Method: Composition-based stats. Identities = 80/389 (20%), Positives = 157/389 (40%), Gaps = 31/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ++R + + +L I+ + P+ + ++ L S E++ I Sbjct: 1 MKLKMKREEFISILSDYTSILRENSIKPILSTLFMEVKGNDLVFMGSSVEMDYKKQILCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ L+ + V+ L++ + +L + I++G F + + E +P Sbjct: 61 GMEDGSVVFKPALVLEYVKLLEE----EWITVEKLDGFLKIANG--EFSI--WEEENYPK 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + EL+ + +E F+ A L+ I +E K+ V+TD +R Sbjct: 113 IVELASMSLLELSGNEFAKCLETVKFSAAQTPENLALHCIRIVFGKE--KVYFVSTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L E + AQ + +I +P AV I+++L K + + LS + E S R Sbjct: 171 LLYLEKKMTAQFER--AISLPLDAVNVIIKLLKDKTEQISLELSGDNLLFLWEGTYFSCR 228 Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296 L +PN+Q ++ + DK++ +L+ A+ RV ++ I A L Sbjct: 229 LTAVPYPNFQGILSQNAFDKKMEFCLDDLKAAMKRVITVAKTSIDAKYGGTFDFKGKHLV 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + K + + + N KYL E +D++S + +++ + NSS Sbjct: 289 VKAVTTGRAKTQQKIAMMKEGEDFVASLNCKYLSEFLDSVSRNVIIEGK--------NSS 340 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ Y+LMP+ + Sbjct: 341 SMFRVTEE-------GNEELIYILMPLAL 362 >gi|302530874|ref|ZP_07283216.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4] gi|302439769|gb|EFL11585.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4] Length = 365 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 68/351 (19%), Positives = 139/351 (39%), Gaps = 23/351 (6%) Query: 33 VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92 + L+AN L + + ++ + + PA+ + G + V A + VR L D Q+ E Sbjct: 35 LRLRANADGLVVSGNDRDLAVQLSCPATTHLDGEVVVPAAPFAETVRML-DVDQVRLVVE 93 Query: 93 NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152 GT + I + F L + + + S ++ L+ + A ++ Sbjct: 94 ---GTRLAIRTDSARFALP-LLDRDLLHDPSPPPLLS-KVDGLALEAALRTVAGTAAKDD 148 Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 G+ + +LC A D +R+AVA + + ++ ++VP + E R Sbjct: 149 PLPVFTGVR--VQSIGGELCLTACDRYRMAVARLPL-REVRDPIDVLVPATLLTEAAR-- 203 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 ++ + + L+ +++ ++D F + ++ + D E+ V+ L A+ Sbjct: 204 -HGSGAMGLHADDRHFALSWPGGTVTTAVLDAGFLSADSIPSNAIDTEVEVSADELAAAI 262 Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332 RV + S R + + L + L + D G+A E + F+ +YLL+ Sbjct: 263 RRVGVYSEDR-RVLTLEVGDAHLRLASARQDTGEAEEHLKANVCGGRTSPSFHARYLLDA 321 Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + S + V + + + D+D + +V Y LMPM Sbjct: 322 LAPFSG-----ERVRLAIQPGLRACVLTPADEDGR-----EVALMYYLMPM 362 Score = 41.8 bits (97), Expect = 0.19, Method: Composition-based stats. Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSI 67 + L + + +PV V +Q+ G L + A +P V + Sbjct: 132 ALEAALRTVAGTAAKDDPLPVFTGVRVQSIGGELCLTACDRYRMAVARLPLREVRDPIDV 191 Query: 68 TVSAHLLYDIVR 79 V A LL + R Sbjct: 192 LVPATLLTEAAR 203 >gi|257467227|ref|ZP_05631538.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC 25563] gi|315918356|ref|ZP_07914596.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium gonidiaformans ATCC 25563] gi|313692231|gb|EFS29066.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium gonidiaformans ATCC 25563] Length = 365 Score = 164 bits (415), Expect = 2e-38, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 157/389 (40%), Gaps = 31/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + +L I++ + P+ + ++ + L S E++ I Sbjct: 1 MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++ L+ + ++ L++ + +L + I++G F + E +P Sbjct: 61 GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG--EFAI--LEEENYPK 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ + +E F+ + LN I +E K+ V+TD +R Sbjct: 113 IVELASMSLLQIQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KINFVSTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L E I AQ + +I +P +AV I+++L K + + LS + L E S R Sbjct: 171 LLYLEKKIGAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLLWEGTYFSCR 228 Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296 L +PN+Q ++ + DK++ +L+ A+ RV ++ I A +L Sbjct: 229 LTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGTFDFKGKQLV 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + K + + + N KYL E +D IS + ++ + NSS Sbjct: 289 VKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVIIYGK--------NSS 340 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ Y+LMP+ + Sbjct: 341 SMFRVMEE-------GNEELIYILMPLAL 362 >gi|218678820|ref|ZP_03526717.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 894] Length = 148 Score = 163 bits (414), Expect = 3e-38, Method: Composition-based stats. Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 14/162 (8%) Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 S+++I + I S+ M+ +LIDG FP+YQ VIP NDKE+RV+CT+ QAVDRVS +SS R Sbjct: 1 SDAKIRMTIGSIVMTSKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERG 60 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 +AVKL+LS +L +TV+NPD G A E + V Y+ M+I FN KYLL+I +S Sbjct: 61 RAVKLALSEGQLMLTVNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG----- 115 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +E +F L + S IR D +A YVLMPMR+ Sbjct: 116 EEAIFLLADAGSPTLIRDTAGD---------DALYVLMPMRV 148 >gi|257451968|ref|ZP_05617267.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R] gi|317058517|ref|ZP_07923002.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R] gi|313684193|gb|EFS21028.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R] Length = 365 Score = 163 bits (413), Expect = 4e-38, Method: Composition-based stats. Identities = 79/389 (20%), Positives = 157/389 (40%), Gaps = 31/389 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R + + +L I++ + P+ + ++ + L S E++ I Sbjct: 1 MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G++ L+ + ++ L++ + +L + I++G F + E +P Sbjct: 61 GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG--EFAI--LEEENYPK 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + ++ + +E F+ + LN I +E K+ V+TD +R Sbjct: 113 IVELASMSLLQIQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KINFVSTDSYR 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L E I AQ + +I +P +AV I+++L K + + LS + L E S R Sbjct: 171 LLYLEKKIRAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLLWEGTYFSCR 228 Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296 L +PN+Q ++ + DK++ +L+ A+ RV ++ I A +L Sbjct: 229 LTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGTFDFKGKQLI 288 Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + K + + + N KYL E +D IS + ++ + NSS Sbjct: 289 VKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVIIYGK--------NSS 340 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 R ++ Y+LMP+ + Sbjct: 341 SMFRVMEE-------GNEELIYILMPLAL 362 >gi|330719907|gb|EGG98379.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047] Length = 168 Score = 163 bits (412), Expect = 5e-38, Method: Composition-based stats. Identities = 57/181 (31%), Positives = 105/181 (58%), Gaps = 14/181 (7%) Query: 206 GEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 E+ R+ S + SVKV +S + I ++ + + +L+DG+FP+YQ V+P ++DKE+ V Sbjct: 1 MELNRLFSGDSEGSVKVVMSSNHIRAVTDNFTFTSKLVDGKFPDYQQVVPKNSDKEMLVE 60 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 L+Q ++R++I+S+ + + V+L + +D L + +NP+ +A ES++V Y+ ++I F Sbjct: 61 RELLKQVLNRIAILSNEKYRGVRLIVDNDLLQVFANNPEQEEAEESLSVKYDSESLEIGF 120 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N YLL+++ SS V +NSS+ I + ++ YV+MPMR Sbjct: 121 NVSYLLDVLSVTSST-----NVKVSFADANSSILIEEI--------VERPDSLYVVMPMR 167 Query: 385 I 385 + Sbjct: 168 L 168 >gi|257437733|ref|ZP_05613488.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] gi|257200040|gb|EEU98324.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] Length = 221 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 21/233 (9%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL- 212 + G F I+ + KL VA DG+RLA+ E + A K IIVP K + E+ +L Sbjct: 4 KPAHTGELFEISPD--KLTVVALDGYRLAIVERPVEA--IKEIRIIVPSKTMNEVSHLLA 59 Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 + + +V +S + + ++ RLI+GEF NY NVIP + + ++ + + Sbjct: 60 NDDEETVHISANRRYVVFTTAGYTIMSRLIEGEFLNYHNVIPNGSRTSVVLDTKEFIETI 119 Query: 273 DRVSIMSSVR-IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331 +R S++ + R +++S + K+ + ++G+ ++ N ++I FN +YLL+ Sbjct: 120 ERASLIITERLKNPLRISFTEGKVVVRCQ-TNLGRVVDEFNAQCEGDEVEIGFNNRYLLD 178 Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + N + ++V + S V + + + Y+++P+R Sbjct: 179 ALRNART-----EQVKLEISGPLSPVKVLPTE---------GSDFLYLVLPVR 217 >gi|308189589|ref|YP_003922520.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] gi|307624331|gb|ADN68636.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER] Length = 368 Score = 163 bits (412), Expect = 6e-38, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 169/391 (43%), Gaps = 31/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +++ + E L + + N++ +L++ ++ + AS I I ++ Sbjct: 1 MKLHIKKQILDETLEIVSKYTDPINSLYGFRCILIKVDNEKVTFSASNGVISIVKSLDVE 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G+ + A++ I++KL + +S E T + IS G+SN+ L + P Sbjct: 61 DVDIKVEETGTFLIQANIFKAIIKKLSETITLSQ----EYSTTLEISQGNSNYSLTTNPI 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + FP +E + E+ ++ K + T FA++ + Y I F KL A Sbjct: 117 NSFPQIEENINLKRIEIDTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNN--KLNLTA 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLA +D+ + V K V ++ I + V + + +I + ++ Sbjct: 174 TDAARLAYYTMDLKSSQVDNEEFSVNNKDVKDL--IPTDASKKVTLFFNRIKIGIEYKNT 231 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ R++D +P+ +++ + ++ + + +++V + +S + ++ +++ ++ Sbjct: 232 VITSRIVDLPYPDVESLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNE 291 Query: 295 LCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + ++G +I ++ N + + NY +L + + D V+ D S Sbjct: 292 MTVLNRLNEIGTSIAKTENFKFEGKAFEFDINYHFLKDALSVFEGD------VLILFDKS 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D+ + ++ PMR Sbjct: 346 VQKILVVS---------DSNKESKQLVTPMR 367 >gi|237740569|ref|ZP_04571050.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] gi|229422586|gb|EEO37633.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31] Length = 364 Score = 162 bits (411), Expect = 7e-38, Method: Composition-based stats. Identities = 71/390 (18%), Positives = 168/390 (43%), Gaps = 33/390 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++ + +++ ++ I++ P + ++ + + K + E+E+ + Sbjct: 1 MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++V G + + LL + ++ L + I+F K++ + ++ F + ++ +P Sbjct: 61 IEVEGQVLIKPSLLLEYIK-LVESEDINFEKKDG-----YLIVNNAEFSI--LDDTTYPE 112 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 KE + S L+E+ F ++ + N I + ++L +TD + Sbjct: 113 IKELPSTTIAKENSLQFAMLLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIEL--ASTDSY 170 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + I K I+VP ++ I +IL + V ++ E ++ + + S Sbjct: 171 RLIYLKKSLENMINK--DILVPADSMSVIYKILKDLNEDVTLATIEDKLIVTWKDAYFSC 228 Query: 240 RLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295 +L+ FP+++ +I S +DK+ N L ++ +V + S+ + ++L Sbjct: 229 KLLSLSFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKVNQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 ++ + + K + +N+ + + N KY+ E IDN D ++ +S+S Sbjct: 289 LISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFIDN------TDKNIIIEATNSSS 341 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I + + N Y++MP+ I Sbjct: 342 MLKIIEEANE---------NYIYLVMPVNI 362 >gi|319776740|ref|YP_004136391.1| DNA polymerase iii beta subunit [Mycoplasma fermentans M64] gi|318037815|gb|ADV34014.1| DNA polymerase III beta subunit [Mycoplasma fermentans M64] Length = 368 Score = 162 bits (410), Expect = 1e-37, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 169/391 (43%), Gaps = 31/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +++ + E L + + N++ +L++ ++ + AS I I ++ Sbjct: 1 MKLHIKKQILDETLEIVSKYTDPINSLYGFRCILIKVDNEKVTFSASNGVISIVKSLDVE 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G+ + A++ I++KL + +S E T + IS G+SN+ L + P Sbjct: 61 DVDIKVEETGTFLIQANIFKAIIKKLSETITLSQ----EYSTTLEISQGNSNYSLTTNPI 116 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + FP +E + E+ ++ K + T FA++ + Y I F KL A Sbjct: 117 NSFPQIEENINLKKIEIDTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNN--KLNLTA 173 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLA +D+ + V K V ++ I + V + + +I + ++ Sbjct: 174 TDAARLAYYTMDLKSSQVDNEEFSVNNKDVKDL--IPADASKKVTLFFNRIKIGIEYKNT 231 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ R++D +P+ +++ + ++ + + +++V + +S + ++ +++ ++ Sbjct: 232 VITSRIVDLPYPDVESLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNE 291 Query: 295 LCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + ++G +I ++ N + + NY +L + + D V+ D S Sbjct: 292 ITVLNRLNEIGTSIAKTENFKFEGKAFEFDINYHFLKDALSVFEGD------VLILFDKS 345 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D+ + ++ PMR Sbjct: 346 VQKILVVS---------DSNKESKQLVTPMR 367 >gi|238810154|dbj|BAH69944.1| hypothetical protein [Mycoplasma fermentans PG18] Length = 369 Score = 161 bits (409), Expect = 1e-37, Method: Composition-based stats. Identities = 71/391 (18%), Positives = 169/391 (43%), Gaps = 31/391 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ +++ + E L + + N++ +L++ ++ + AS I I ++ Sbjct: 2 MKLHIKKQILDETLEIVSKYTDPINSLYGFRCILIKVDNEKVTFSASNGVISIVKSLDVE 61 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G+ + A++ I++KL + +S E T + IS G+SN+ L + P Sbjct: 62 DVDIKVEETGTFLIQANIFKAIIKKLSETITLSQ----EYSTTLEISQGNSNYSLTTNPI 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 + FP +E + E+ ++ K + T FA++ + Y I F KL A Sbjct: 118 NSFPQIEENINLKKIEIDTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNN--KLNLTA 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLA +D+ + V K V ++ I + V + + +I + ++ Sbjct: 175 TDAARLAYYTMDLKSSQVDNEEFSVNNKDVKDL--IPADASKKVTLFFNRIKIGIEYKNT 232 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ R++D +P+ +++ + ++ + + +++V + +S + ++ +++ ++ Sbjct: 233 VITSRIVDLPYPDVESLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNE 292 Query: 295 LCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + + ++G +I ++ N + + NY +L + + D V+ D S Sbjct: 293 ITVLNRLNEIGTSIAKTENFKFEGKAFEFDINYHFLKDALSVFEGD------VLILFDKS 346 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + D+ + ++ PMR Sbjct: 347 VQKILVVS---------DSNKESKQLVTPMR 368 >gi|110589514|gb|ABG77266.1| DNA polymerase III beta-subunit DnaC [Endoriftia persephone 'Hot96_1+Hot96_2'] Length = 188 Score = 161 bits (408), Expect = 2e-37, Method: Composition-based stats. Identities = 54/180 (30%), Positives = 112/180 (62%), Gaps = 2/180 (1%) Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207 MA +++RYYLNG+ I+ +K VATDGHRLA +++ + +I+PRKA+ E Sbjct: 1 MAQQDVRYYLNGLLLEISNGIIK--TVATDGHRLAFSQIKAIENYELKTQLIIPRKAIIE 58 Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267 + R+L +++++ +S + + ++++ + +LIDG FP+Y+ VIP +N+ +L ++ + Sbjct: 59 LYRLLDESENTIRFEVSSNYVRVHLDRTIFTSKLIDGVFPDYEKVIPKNNENKLVMDKSE 118 Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327 L++++ R SI+S+ + + +KL + D++ + +NP+ +A +++ Y+ + F K Sbjct: 119 LKKSLRRASILSNEKYKGIKLEIKEDRVQIIANNPEQEEAKIEIDLDYSRKGIKHRFKCK 178 >gi|302520515|ref|ZP_07272857.1| LOW QUALITY PROTEIN: DNA polymerase III beta subunit domain-containing protein [Streptomyces sp. SPB78] gi|302429410|gb|EFL01226.1| LOW QUALITY PROTEIN: DNA polymerase III beta subunit domain-containing protein [Streptomyces sp. SPB78] Length = 169 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 5/164 (3%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 KI VER + E + A R + + PV +LL+A +G L + E+ ++ A Sbjct: 11 KIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAET 70 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + G++ VS LL DI R L + + + G ++ G S F L + P E+P+ Sbjct: 71 EEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVTCGSSRFTLHTLPVEEYPAL 126 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165 + + + V + ++ A ++ L G+ I Sbjct: 127 PQMP-SATGTVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIE 169 >gi|310816477|ref|YP_003964441.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25] gi|308755212|gb|ADO43141.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25] Length = 377 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 93/394 (23%), Positives = 162/394 (41%), Gaps = 39/394 (9%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 ++R + + + R +++ IP ++ + + G + ++A+ + +T + A Sbjct: 8 IIDRHALRKAMTSLQRTVQQWAAIPALKYISISSGLGEVTLRATDLDNLLTIKLEAETTG 67 Query: 64 CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS---FPESEFPS 120 VSA +L L G + G + I+ D L+ +FP+ Sbjct: 68 TVPFLVSAEVLQKFA-SLAAGPVTVTRTPDIEGKDALITITDQETTLRLRERIQHDDFPT 126 Query: 121 TKEEE--YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + F + + L +++ + ++TEE RYYLNGI+ E L AVATDG Sbjct: 127 VPAWDMKDAARFTGSGAELSRILDLSRHCVSTEETRYYLNGIYLITAPERSTLRAVATDG 186 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSM 237 HR+AV + +I A + +I PR A+ +L ++ +K+ E+R + + + Sbjct: 187 HRMAVIDSNIEA--PNLAGVIFPRFALDVFRGLLDPKSNTPIKMQFEENRGIIEGDDWIL 244 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVN-CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296 ++IDG FP+Y VIP ++ + + R+S I A S K+ Sbjct: 245 HSKMIDGTFPDYTRVIPK-HETNCEAHFTRAIVTKAHRLSQAVRGHIAAAATITSDGKMH 303 Query: 297 MTVDNPDMGKAIESMNVYYNECP-MDI---CFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + D ES++V P D+ FN KYL + V E R + Sbjct: 304 LMHEGED-----ESVSVPVGASPNFDLGRHGFNVKYL-------NKQAQVTPEFTLRAST 351 Query: 353 --SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N I D D A ++LMPMR Sbjct: 352 ERPNDPATIVSDDPD----------ACWILMPMR 375 >gi|254435683|ref|ZP_05049190.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus oceani AFC27] gi|207088794|gb|EDZ66066.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus oceani AFC27] Length = 171 Score = 161 bits (407), Expect = 2e-37, Method: Composition-based stats. Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 14/172 (8%) Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 V++ +++ + LS S +LIDG+FP+Y+ VIP +K+ + +QA+ Sbjct: 14 ESQEPVRLKFGTNQMRAEFQGLSFSTKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALV 73 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I+++ + + V L LS KL V N + G A E +++ Y ++I FN YL++++ Sbjct: 74 RVNILTNDKYRGVHLHLSDLKLQAIVTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVL 133 Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + I + EV +++SS I D ++ YV+MPMR+ Sbjct: 134 NIIDTK-----EVRLTFTNASSSCLITPIDA---------SDSKYVVMPMRL 171 >gi|289610240|emb|CBI60295.1| unnamed protein product [Sordaria macrospora] Length = 162 Score = 160 bits (406), Expect = 3e-37, Method: Composition-based stats. Identities = 64/154 (41%), Positives = 97/154 (62%) Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 VD KMP +IVPRK V E+ ++L D SV VSLS S+I ++ ++ +LIDG Sbjct: 3 VDRPEGAEKMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGSKIRFDLGQAILTSKLIDGT 62 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 FP+Y VIP +NDK L+++ + VDRVS +++ + +AVK++L DK+ ++V +P+ G Sbjct: 63 FPDYSRVIPTANDKLLKLDPKSFMAGVDRVSTIATEKTRAVKMALDRDKITLSVTSPENG 122 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339 A E + Y P +I FN +YLL+I+ I SD Sbjct: 123 AAAEEVPGEYAALPFEIGFNSRYLLDILGQIDSD 156 >gi|261749644|ref|YP_003257330.1| DNA polymerase III subunit beta [Blattabacterium sp. (Periplaneta americana) str. BPLAN] gi|261497737|gb|ACX84187.1| DNA polymerase III, beta subunit [Blattabacterium sp. (Periplaneta americana) str. BPLAN] Length = 382 Score = 160 bits (404), Expect = 5e-37, Method: Composition-based stats. Identities = 78/401 (19%), Positives = 160/401 (39%), Gaps = 43/401 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE---IEITGAI 57 M +V +L+ L +II K ++ + L I S E + + Sbjct: 1 MHFSVSSFSLLQELYFLHKIINTKYSL-----FKFKIFGKKLVIMVSDSENHLVTAEIQV 55 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 I + L+ +I++ + ++N +NI ++ + Sbjct: 56 YVKKTSEEKIAIHPKLMIEILKTFPNETIFIKKEKNT----LNIYSEQGDYPIPIICHEN 111 Query: 118 --------FPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 F S + E + L S +L ++ +T FA EEI+ +NG+FF + + Sbjct: 112 KNRHHLTIFSSMENFEKGKILKITLFSKILLKILNKTLFATGNEEIKPVMNGVFFRFSPK 171 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 VATD ++L + + + I+ RK++ + IL ++ SV + ++ Sbjct: 172 GATF--VATDTYKLVKYTLK-NIKSNQYIEFIISRKSLRILKNILFNEKKSVTIEYKKTG 228 Query: 228 IH-LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286 I + E+ + LI+ ++P+Y +V P D +N ++ R+S+ S + Sbjct: 229 ILKFSFETKTFLCELINEKYPDYNSVFPKKKDISFIINRLFFLNSIKRISLFSKEETNFI 288 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYY------NECPMDICFNYKYLLEIIDNISSDE 340 + +LS + L + +N + + Y +E + + FN K+L+EI+ + Sbjct: 289 RFNLSDNTLRIYEENTRI-SIFSKIRCKYIAEYFRDESIIKMGFNSKFLIEILSSFK--- 344 Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 +D V F L SSN + ++ + + ++M Sbjct: 345 --EDFVSFELYSSNRMGIFKP-----FSSSKKEESTLILIM 378 >gi|330883328|gb|EGH17477.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea str. race 4] Length = 206 Score = 159 bits (403), Expect = 6e-37, Method: Composition-based stats. Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 2/178 (1%) Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200 + + YYLNG+ ++ L+ AVATDGHRLA+ + + A +IV Sbjct: 31 ISIRRKVTRDSQNSYYLNGMLLEVSAGILR--AVATDGHRLAMCSMSADIEHADRHQVIV 88 Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 PRK + E+ R+L+ +D V + L + I + + +L+DG+FP+Y+ V+P DK Sbjct: 89 PRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKL 148 Query: 261 LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318 + + LR+A R +I+S+ + + ++L L+S +L + +NP+ +A E ++V YN Sbjct: 149 VLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYNGD 206 >gi|149200629|ref|ZP_01877632.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155] gi|149136278|gb|EDM24728.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155] Length = 209 Score = 159 bits (403), Expect = 7e-37, Method: Composition-based stats. Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 23/229 (10%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216 + G+ I D VATDG R+A+ E I + + I+P KA E+ ++L Sbjct: 1 MTGLLLTIT--DGTFTTVATDGRRMALVETVIGSDSSLDSDSILPLKAAQELPKVLEGS- 57 Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 S VKVSL ++ + + + +L++G FPNY+ V+P + + + A+DRVS Sbjct: 58 SDVKVSLGDTHAVFSTDDVVFQTKLLEGNFPNYRMVMPPGFENHVTMPRDEFYSALDRVS 117 Query: 277 IMSSVRIQAVKLSLSSDKLCMTV-DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 + + AVKLSL+ ++ ++ +N ++ ++ + Y +D+ FN +L++ + + Sbjct: 118 QIL-DKNPAVKLSLTPTEVLISAMNNAEVAES--PIPASYEGENLDLSFNASFLIDPLRH 174 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + ++ + R + S + G + YV+MP+R Sbjct: 175 LECNK-----LTLRFNDRLSPTGLYGDE-----------GFLYVIMPLR 207 >gi|148927259|ref|ZP_01810830.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1] gi|147887345|gb|EDK72798.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1] Length = 202 Score = 159 bits (402), Expect = 7e-37, Method: Composition-based stats. Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 11/211 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+TV + ++ + L R+ K +P+ ++LL+ ++ L + A+ EI IT I A Sbjct: 1 MKLTVTQENLTKALNGVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G+ITV A L+ + + L G + G ++I+ G + + EFP Sbjct: 61 VAKNGAITVPARLMAEFISNLPKGNVELSVE----GAHLHIAAGAYSSTINGMEAEEFPE 116 Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 + E+ + V+K V +T +++ R +L G++ H E D L ATDG Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGD--LYFAATDG 174 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 +RL+ ++ + + K IVP + ++L Sbjct: 175 YRLSERKIGAMKEDLK---AIVPASTLQDVL 202 >gi|324323932|gb|ADY24975.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar finitimus YBT-020] Length = 394 Score = 158 bits (401), Expect = 1e-36, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 157/378 (41%), Gaps = 29/378 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV G++ V + D+ +KL +N + + G S F L +F S Sbjct: 61 EDVSVISEGTVLVE-KKIVDVAKKLTKEPIKLKLSKNT----LQVISGKSKFTLNTFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + +K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++G++P+ ++ + + VN + +A++++ + +S + + +L+++ + Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291 Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + G A E + V + + FN + L I I+ D Sbjct: 292 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346 Query: 346 VVFRLDSSNSSVFIRGKD 363 + + + I +D Sbjct: 347 ISIGFNGEKKPISIVHED 364 >gi|229113628|ref|ZP_04243075.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] gi|228669824|gb|EEL25220.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15] Length = 418 Score = 157 bits (398), Expect = 2e-36, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 157/378 (41%), Gaps = 29/378 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 25 MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 84 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV G++ V + D+ +KL +N + + G S F L +F S Sbjct: 85 EDVSVISEGTVLVE-KKIVDVAKKLTKEPIKLKLSKNT----LQVISGKSKFTLNTFKVS 139 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 140 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 197 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + +K S+K+S ++ L+ ++ + Sbjct: 198 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 256 Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++G++P+ ++ + + VN + +A++++ + +S + + +L+++ + Sbjct: 257 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 315 Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + G A E + V + + FN + L I I+ D Sbjct: 316 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 370 Query: 346 VVFRLDSSNSSVFIRGKD 363 + + + I +D Sbjct: 371 ISIGFNGEKKPISIVHED 388 >gi|134122662|dbj|BAF49636.1| DnaN [Microcystis viridis NIES-102] Length = 181 Score = 157 bits (398), Expect = 3e-36, Method: Composition-based stats. Identities = 46/193 (23%), Positives = 102/193 (52%), Gaps = 18/193 (9%) Query: 197 SIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 ++ +P +A+ E+ R++++K ++ + + +S++ + ++ R ++G +P Y +IP Sbjct: 1 NVTIPARALRELERMMATKQNIETITLHVDDSQVIFEMGEQRLTSRKLEGAYPTYNQLIP 60 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMN 312 S D+ L ++ L + ++ V+++S + VK SL +D+L + V++PD+G A ESM Sbjct: 61 KSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMA 120 Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372 DI FN KYL++ + + +++ + +L++S V Sbjct: 121 AEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQLNASTQPVIFTP---------LG 166 Query: 373 KVNAFYVLMPMRI 385 + Y++MP++I Sbjct: 167 GLKMTYLVMPVQI 179 >gi|229125330|ref|ZP_04254425.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] gi|228658129|gb|EEL13874.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201] Length = 394 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV G++ V + D+ +KL +N + + G S F L +F S Sbjct: 61 EDVSVIAEGTVLVE-KKIVDVAKKLTKEPIKLKLSKN----ILQVISGKSKFTLNTFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++G++P+ ++ + + VN + +A++++ + +S + + +L+++ + Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291 Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + G A E + V + + FN + L I I+ D Sbjct: 292 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346 Query: 346 VVFRLDSSNSSVFIRGKD 363 + + + I +D Sbjct: 347 IAIGFNGEKKPISIVHED 364 >gi|300790639|ref|YP_003770930.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] gi|299800153|gb|ADJ50528.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32] Length = 353 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 67/383 (17%), Positives = 143/383 (37%), Gaps = 33/383 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +T + + A R++ + + L+A L + ++ + PA+ Sbjct: 1 MDVTAPAHRLSAAVSAASRLLPAR------AGLRLEAAAAGLTVAGVASDLAVRFGCPAT 54 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS+ V A L + ++ L D + E G+ + + ++ F L PES Sbjct: 55 THTDGSVVVPAAPLVETLKVL-DTELVRLVVE---GSRLALRLDNARFALPLLPES---G 107 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + E+ + + + A ++ G+ L L A+D +R Sbjct: 108 AVSDPPAKVSEVDGAAFASALRIVAGTAAKDDPLPLFTGVRVQAAGAGLTL--TASDRYR 165 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 +AVA + + ++VP + E R V + + R ++ ++ Sbjct: 166 MAVARLPL--SSPGSLDVLVPAALLSEAARQAR---GRVGLHVGPGRFGVSWPEGLVATA 220 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300 ++D F + ++ + D + + L AV RV + + R + + L + ++ + Sbjct: 221 VLDAGFLSEDSIPSGTVDTTVSLPADALAAAVRRVGVYAEDR-RVLTLEVGDAQVRLASA 279 Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360 D G+A E++ + F +YLL+ + + ++VV + + +R Sbjct: 280 RQDTGEAEETLKADVSGGRTSPSFQARYLLDALAAFAG-----EQVVLSIQPGMRACILR 334 Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383 + +V Y LMPM Sbjct: 335 AAEP-------GEVALAYYLMPM 350 >gi|118588967|ref|ZP_01546374.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] gi|118438296|gb|EAV44930.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614] Length = 398 Score = 156 bits (396), Expect = 4e-36, Method: Composition-based stats. Identities = 88/399 (22%), Positives = 160/399 (40%), Gaps = 44/399 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I ++ L I+R++T+P+ VL++ DG + A+ ++EI Sbjct: 1 MLIETTAGELKTALMSVKPAIQRRSTLPILSAVLIE--DGAVI--ATDLDMEIRVKFAVK 56 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 GS + + LYD+VR L + V ++ ++L S+ ++P Sbjct: 57 -KCEGSAVIPFNQLYDLVRLLPADRSVRLQDTEYKNGGVFVTFQGGRYFLPSYSVVDYPR 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E V +L +E M+TEE RYYLNG+ F +++D + VATDGHR Sbjct: 116 FSMPEDVREIASPQGLL-VALEACQSFMSTEETRYYLNGVCFGRDKDDTGV-LVATDGHR 173 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSMSV 239 L + + I+PR + +LR+ KV L E ++ + + Sbjct: 174 LIAHDYAHDCDGSP----ILPRAMIVALLRLC----EPEKVLLHEQKMEFVLPGGGYLRC 225 Query: 240 RLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQA-------VKLSL 290 +LIDG FP++Q V+P L + ++R+ + R +A + + Sbjct: 226 KLIDGTFPDWQRVVPTIPPGSPRLFFEPLEMVSILNRLELGRGCRKRAGASFCVDIATNA 285 Query: 291 SSDKLCMTVDNPDMGKAIESMN----VYYNECPMDI-CFNYKYLLEIIDNISSDEVVDDE 345 + D ++ + + E + + + + I N Y+ E + D+ Sbjct: 286 AGDLAIVSSEGMGGEECAERIESGRAIDWTKLSGGIWSGNSGYIKE----LCRLNFSADQ 341 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V + S + +R ++ A V+MPMR Sbjct: 342 VELTAEGSGTPTVMRHEES----------KALMVIMPMR 370 >gi|237728525|ref|ZP_04559006.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2] gi|226910003|gb|EEH95921.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2] Length = 382 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 76/396 (19%), Positives = 159/396 (40%), Gaps = 45/396 (11%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAIPASVDVCGSITVSAHLLYD 76 +I R + V + L+ L +I G + A V+ ++V + L+ Sbjct: 2 VIRRSPAMKVLEMITLRLRGDCLSALGIDLNSAQITSKGTVSA-VNGDMDVSVPSTQLFS 60 Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES-EFPSTKEEEYVYSFELASS 135 ++R ++ +I+ + + + I +++ + + + E+ YS + Sbjct: 61 LIRNMRGEDEIN-VRFHAAKNHLVIRTDKNSYNIPVCLDHIPEIQVETLEHNYSVYFPTQ 119 Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA-- 193 +L +++R A A ++R+Y+NG++ I ++ + AVATDGHR+AV+ DI Sbjct: 120 MLSQIIKRVSHAAAQNDVRHYMNGVYLGI--DNGQFIAVATDGHRMAVSSHDIDFSDDVS 177 Query: 194 --------------KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +I+P + + +ILS K+ S + + S ++ Sbjct: 178 DEIQYPTAPTSISNTNAGVILPNGVLPVLHKILSGSQGQFKIDYSNRNLAFTLGSHTVIS 237 Query: 240 RLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSD 293 L+DG +P+++ V +VN + L A+ R + + S +S + Sbjct: 238 NLVDGRYPDWKRVASTVAKNTELFKVNPSELTTALKRATPLLKEGSPNNTSVCVMSFKDN 297 Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECP---MDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L + + E M++ P +DI N YLLE + ++ + + V Sbjct: 298 ALQLKSPGTNAISCKEVMDIAKEAGKPEAMVDIGMNADYLLESLASLGACSEEGEAVQIA 357 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L + + + I N + ++MP+R+ Sbjct: 358 LRDTTTGILI-----------SVNKNIYDIIMPVRV 382 >gi|229051325|ref|ZP_04194839.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] gi|228722018|gb|EEL73449.1| DNA polymerase III, beta subunit [Bacillus cereus AH676] Length = 394 Score = 156 bits (395), Expect = 5e-36, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 156/378 (41%), Gaps = 29/378 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV G++ V + D+ +KL +N + + G S F L +F S Sbjct: 61 EDVSVIAEGTVLVE-KKIVDVAKKLTKEPIKLKLSKN----ILQVISGKSKFTLNTFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++G++P+ ++ + + VN + +A++++ + +S + + +L+++ + Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291 Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + G A E + V + + FN + L I I+ D Sbjct: 292 SIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346 Query: 346 VVFRLDSSNSSVFIRGKD 363 + + + I +D Sbjct: 347 IAIGFNGEKKPISIVHED 364 >gi|218291395|ref|ZP_03495338.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1] gi|218238750|gb|EED05966.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1] Length = 249 Score = 156 bits (394), Expect = 7e-36, Method: Composition-based stats. Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 7/239 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +E+ + L RI + + V VL++A G + + A ++ + + AS Sbjct: 1 MRCLMEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGRVTLSAYDYDVALRMTVEAS 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V G + + A L ++VR+L G + +I G ++ L F +EFP Sbjct: 61 VVDPGGVVLPAKLFAELVRRLPKGT-VDIATIAPHHLSASIDVGTTHAELHGFDPAEFPV 119 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179 + + E+++ L ++ +A A ++ R L G++ + ED KL +ATDG Sbjct: 120 LPDMTGIAPVEISAKTLVEAIQSVGYAAAKQDASRPILEGVY--VGYEDGKLIWMATDGL 177 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSM 237 RLA + +++ +PR+A+ E+ R+L D++++V S + + + + Sbjct: 178 RLAKVSQTVDREMS--IRCTIPRRALTELTRLLDADDDATLQVYQSVNYVLFAWNGVKL 234 >gi|296506465|ref|YP_003667699.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171] gi|296327052|gb|ADH09979.1| DNA polymerase III, beta subunit [Bacillus thuringiensis BMB171] Length = 394 Score = 155 bits (393), Expect = 9e-36, Method: Composition-based stats. Identities = 69/378 (18%), Positives = 155/378 (41%), Gaps = 29/378 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M I + +S ++E L + + P+ +L+ A L A+ + I + Sbjct: 1 MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 SV G++ V + D+ +KL +N + + G S F L F S Sbjct: 61 EDVSVIAEGTVLVE-KKIVDVAKKLTKEPIKLKLSKN----ILQLISGKSKFTLNIFKVS 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 ++P K + Y ++ S+L+ + +A +T R L GI ++E + +T Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D H+LA + + + + +P A+ E + K S+K+S ++ L+ ++ + Sbjct: 174 DSHQLAYKAIKLQTAFKEEFKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232 Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 + ++G++P+ ++ + + VN + +A++++ + +S + + +L+++ + Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291 Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + G A E + V + + FN + L I I+ D Sbjct: 292 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346 Query: 346 VVFRLDSSNSSVFIRGKD 363 + + + I +D Sbjct: 347 ISIGFNGEKKPISIVHED 364 >gi|153831483|ref|ZP_01984150.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39] gi|148873034|gb|EDL71169.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39] Length = 144 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 45/157 (28%), Positives = 87/157 (55%), Gaps = 14/157 (8%) Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288 + + +L+DG FP+Y+ V+P K L+ C LRQA R +I+S+ + + V++ Sbjct: 2 RAEVNHFVFTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRV 61 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 +L+ +++ +T +NP+ +A E ++V + P++I FN Y+L++++ + D V Sbjct: 62 NLADNEMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRV 116 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +N+S + D DS A YV+MP+R+ Sbjct: 117 SMSDANASALVENVDDDS---------AMYVVMPIRL 144 >gi|24209792|gb|AAN39856.1| DnaN protein [Salmonella enterica subsp. enterica serovar Agona] gi|24209794|gb|AAN39857.1| DnaN protein [Salmonella enterica subsp. enterica serovar Enteritidis] gi|24209810|gb|AAN39865.1| DnaN protein [Salmonella enterica subsp. enterica serovar Typhi] Length = 167 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%) Query: 51 IEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109 +E+ + S G+ TV A +DI R L +GA+I+ E G + + G S F Sbjct: 1 MEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFS 57 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 L + P ++FP+ + + F L + +K L+E T F+MA +++RYYLNG+ F +L Sbjct: 58 LSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSEL 117 Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222 + VATDGHRLAV + + A + S+IVPRK V E++R+L ++ ++V Sbjct: 118 R--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQ 167 >gi|1706498|sp|P52620|DPO3B_VIBHA RecName: Full=DNA polymerase III subunit beta gi|1006570|gb|AAA78258.1| DNA polymerase III holoenzyme beta subunit [Vibrio harveyi] Length = 145 Score = 155 bits (392), Expect = 1e-35, Method: Composition-based stats. Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ERS +++ L + + T+P+ ++LL+ D +L + A+ E+E+ + Sbjct: 1 MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60 Query: 61 VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 D GSITV + DI R L D + I+F E G V + G S F L + P ++FP Sbjct: 61 GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFA 147 + ++ + L S L+ L+E+T F+ Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFS 145 >gi|126143269|gb|ABN80081.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 196 Score = 155 bits (391), Expect = 1e-35, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 120/204 (58%), Gaps = 8/204 (3%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + + L VATDG+RLA+ ++ + I S+I+PRK + E+ R+L+ Sbjct: 1 RYYLNGMLLE--KNNTFLRTVATDGYRLAITKIFLKKDII-PFSVIIPRKGILELYRLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + + + + ++ I ++I L + +LI+G++P+Y++++ + + +NC L++++ Sbjct: 58 IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESILINIKKEPIILNCQLLKKSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I+S + +++ + ++L + DN + A + N+ Y+ + + N Y+++++ Sbjct: 118 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 177 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + I+S + + L+ SN+S+ Sbjct: 178 NTITS-----ENIFLYLNESNNSI 196 >gi|156028374|gb|ABU42566.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 197 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 53/204 (25%), Positives = 119/204 (58%), Gaps = 7/204 (3%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + + L VATDG+RL + ++ + I S+I+PRK + E+ R+L+ Sbjct: 1 RYYLNGMLL--KKNNTFLYTVATDGYRLGITKIFLQKDIIIPFSVIIPRKGILELYRLLN 58 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 + + + + ++ I ++I L + +LI+G++P+Y+++I + + +NC L++++ Sbjct: 59 IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESIIIIIKKEPIILNCQLLKKSLL 118 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I+S + +++ + ++L + DN + A + N+ Y+ + + N Y+++++ Sbjct: 119 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 178 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + I+S + + L+ SN+S+ Sbjct: 179 NTITS-----ENIFLYLNESNNSI 197 >gi|298294438|ref|YP_003696377.1| DNA polymerase III subunit beta [Starkeya novella DSM 506] gi|296930949|gb|ADH91758.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506] Length = 406 Score = 154 bits (390), Expect = 2e-35, Method: Composition-based stats. Identities = 79/338 (23%), Positives = 145/338 (42%), Gaps = 31/338 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK+ ER+ +L L + ++KN IP+ HV L+ LL + A+ + IPA Sbjct: 1 MKLIAERTHLLAALKTVGHLAQKKNPIPLLRHVRLRTVGRLLFVAATDQDAYAEAEIPAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ GS T+ A +L +V DG+Q+ L T I G S + P +FP+ Sbjct: 61 VERQGSTTIDADVLQRMVNNFADGSQVYIDAGEALAT---IKAGRSRYQPPVLPADDFPA 117 Query: 121 T--KEEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 +E+ F + V + LV A + + L G++ H +++D L A ATD Sbjct: 118 MFAPKEKDAARFTLMPEEVKRLLVVPRPAAPKGQADKQQLEGVYLHTSDDDRTLWAAATD 177 Query: 178 GHRLAVAEVDIVAQIAKMPSII--------------VPRKAVGEILRILSSKDSSVKVSL 223 G A++ AK+P ++ VP AVG ++++ ++ +++ Sbjct: 178 GLTFIAADIPAPEGAAKLPKLVEPGEHGAGRPRGLMVPMDAVGHLIKL---GENGLEIEA 234 Query: 224 SESRIHLNIE------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277 + + +S + RLID FP Y+ +P + V A+ R++ Sbjct: 235 DTNVLAARAGLPSSAVKVSYATRLIDNRFPPYERFLPPLEGVSILVEAGAFADAIKRLAD 294 Query: 278 MSSVRIQAVKLSL-SSDKLCMTVDNPDMG-KAIESMNV 313 M+ + + + L + +D+ G E++++ Sbjct: 295 MAGNEERPIAIEWEEEGDLSLWLDDHADGIYGTETIDI 332 >gi|213423088|ref|ZP_03356106.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 131 Score = 153 bits (388), Expect = 3e-35, Method: Composition-based stats. Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 4/134 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 STKEEEYVYSFELA 133 + + + F L Sbjct: 118 NLDDWQSEVEFTLP 131 >gi|313635491|gb|EFS01728.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067] Length = 196 Score = 153 bits (386), Expect = 5e-35, Method: Composition-based stats. Identities = 43/205 (20%), Positives = 100/205 (48%), Gaps = 14/205 (6%) Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 + E+ + I + +I++P K++ E+ +IL S++++L+ ++I ++ L RL+ Sbjct: 1 LREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLL 60 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLCMTVD 300 +G +P+ +IP EL +N QA+DR S+++ V ++L + ++ ++ + Sbjct: 61 EGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLITLDNGQVEVSSN 120 Query: 301 NPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +P++G E++ + + I FN KY+++ + D++ + + Sbjct: 121 SPEVGNVSENVFSQSFTGEEVKISFNGKYMMDALRAFEG-----DDIQISFSGTMRPFVL 175 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 R KD + N ++ P+R Sbjct: 176 RPKDATNPNE------ILQLITPVR 194 >gi|30171300|gb|AAP20074.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|30171304|gb|AAP20076.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 217 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 7/223 (3%) Query: 45 KASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH 103 A+ E E+ I S GSITVS L +I R + + I E +++IS Sbjct: 1 TATNLETELISNIEISKTYTPGSITVSGQKLLNICRNSSELSDIKISLNKE---KIHISL 57 Query: 104 GDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163 +SN+ L + P FP+ ++V F ++S +LK ++E+THF+M +++RYYLNG+ Sbjct: 58 ENSNYILNTLPAENFPNHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLE 117 Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 + L VATDG+RL +A+ + + + S I+PRK + E+ ++L+ + + V + Sbjct: 118 --KNKTSLYTVATDGYRLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLI 174 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266 ++ I + IE L +V+LI+GE+P+Y++++ + +N Sbjct: 175 GKNNIKIYIEKLIFTVQLIEGEYPDYKSILSRKKQHPIILNNK 217 >gi|260062690|ref|YP_003195770.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501] gi|88784257|gb|EAR15427.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501] Length = 362 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 70/384 (18%), Positives = 150/384 (39%), Gaps = 31/384 (8%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 I + +L L +I NT+PV HV ++ G + + AS E + A Sbjct: 4 IEINSRALLGQLNRLSGLI--NNTLPVLSHVKVETQKGHVFMTASNLETTASVLFEAKCK 61 Query: 63 VCGSIT-VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GSIT + + L I++ L D + + + I GD+++ L P +FP Sbjct: 62 -PGSITCIPHNTLSSILKNLPDAPVSITIESDGVIQNAEIVCGDADYKLPGLPPDDFPRI 120 Query: 122 KEEEYVYSFELASSVLKNLVE-RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E + EL ++ ++ T F T+E+ + N I + E L +A H Sbjct: 121 AEHPWEEKIELEAAHFLQTLKTATRFTDQTDELSGFQNIIL---DAESGYLEVMAMTRHL 177 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L ++ + K ++V KA + + + +K+S +++ + + +++++ VR Sbjct: 178 LFKRQIT---KAKKKFMMMVTTKAATYLASGAFTSEK-IKLSEAKNMLLITGDNIAVHVR 233 Query: 241 LIDGEFPNYQNVIPCSNDKE-LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 + + P YQ + + N L+ + R+ R + D+ + + Sbjct: 234 QPEWKPPQYQLLFSKDRVQHGWEANTEELKTKLSRLLSACQSRFAIADFDMKKDRTTLKI 293 Query: 300 DNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 ++ E + + + +Y + + ++ V ++ V ++N++ F Sbjct: 294 EDEAYATRGQEIVPAELTGSAVKV----RYQIATL-QLALSVVEEERVKLEFQAANTATF 348 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMP 382 I + N ++MP Sbjct: 349 I------------DTENTKMLVMP 360 >gi|47458837|ref|YP_015699.1| DNA polymerase III beta chain [Mycoplasma mobile 163K] gi|47458165|gb|AAT27488.1| DNA polymerase III beta chain [Mycoplasma mobile 163K] Length = 369 Score = 150 bits (380), Expect = 3e-34, Method: Composition-based stats. Identities = 73/394 (18%), Positives = 165/394 (41%), Gaps = 35/394 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MKI R + ++L I+ N P + N+ I +S ++ I I Sbjct: 1 MKIKSNRRTLEKILDIFNPTIDSTNPFPALLGLYFDVNESTTTIISSNGDVSIKHKIVSN 60 Query: 58 -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + G + + + L +I++K+ I G + + + + + + Sbjct: 61 ENFKIIEPGILLIPSSLFRNIIKKIDGEVFIR-----NEGLILYLENEGNIYTINCLESE 115 Query: 117 EFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAV 174 +P + SS ++++++ FA ++ E L+G+ F++N K+ A Sbjct: 116 NYPKIDFNLIDHKKVVINSSFIRDVIKNVSFASSSSETNNLVLSGVNFNLNLN--KIIAT 173 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 ATD RLA + +I + K + ++ L+S V++ + E +I++ E+ Sbjct: 174 ATDSFRLAQESSSTLTN--GDFNITITAKNLRDLFSNLNS--EKVELLIDEYKINIIDEN 229 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +LI+ + + +IP + +K+L + L +++ ++ + R A+ +S+S+++ Sbjct: 230 TIFQAKLINMPYIDVTKIIPKNFEKKLYIEKRVLNNYLNKAMVVLNERYSAIDVSISNEE 289 Query: 295 LCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 + T ++G + + + P+ I N +++ E I+ + + ++ Sbjct: 290 IIFTSQRKEVGATKLVLKNDSFTFEGTPIKIRLNSRFIKEAINVFE------NNIEILMN 343 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS V I+ KD N ++ P+RI Sbjct: 344 SSEKPVLIKDKD---------SFNNLQLISPLRI 368 >gi|325914679|ref|ZP_08177020.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] gi|325539181|gb|EGD10836.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC 35937] Length = 374 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 87/400 (21%), Positives = 161/400 (40%), Gaps = 41/400 (10%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDG-LLEIKASGPEIEITGAIP 58 M IT R D+L + + +R+ + ++ ++A +G + S +I A Sbjct: 1 MHITTTREDLLAAIAPLMSVAQRRTKSRNGHANLTIRAGEGTQIHFNTSDENSDICTAST 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS---FPE 115 A++ G I VSA L DI+R G+ + G +NI S F + Sbjct: 61 ATIRERGEIGVSAKRLSDIMRSFASGSLVEM---QRKGNFLNIKLDGSRFSINCDGPLAP 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAV 174 + K + F+LA+ K L++ +A L G+ FH+ + L+L V Sbjct: 118 VTRQAAKTGQTTGKFDLAADEFKYLLDAACSGVAGLGSDSKLPQGVLFHLTGDRLRL--V 175 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNI 232 TDG R+AVA I + +++ +V +I +LS D + S H+ Sbjct: 176 GTDGGRMAVASTSI--NTLQAEKLVLGHNSVADIRTLLSKARSDEQIGFSWGSGMAHIKT 233 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + V ++ + +Y+ ++ + V +LR+ + R I+S+ AV + L+ Sbjct: 234 TYADLHVGVLANTYVDYERIMAANTVNPFHVGLADLREILTRTLILST----AVTVKLTG 289 Query: 293 DKLC-MTVDNPDMGKAIESMN-VYYNEC-----PMDICFNYKYLLEIIDNISSDEVVDDE 345 L +T D + ES+ + I N +YLL+ ++ V + Sbjct: 290 RTLSFITADQASRSQGQESIESIELPADARRVNDFAISVNAQYLLDALNA-----VRGES 344 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + ++ + + D++ YV MP+RI Sbjct: 345 VHLSVSKPDTPLIVLANGGDAR---------VYV-MPVRI 374 >gi|169825432|ref|YP_001695607.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41] gi|168994709|gb|ACA42248.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41] Length = 365 Score = 148 bits (373), Expect = 2e-33, Method: Composition-based stats. Identities = 73/391 (18%), Positives = 156/391 (39%), Gaps = 34/391 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M++ + I+ + R ++ T P +LL N LE AS E+ P Sbjct: 1 MQMQLNSKTIVNGINKVGRFKSKEKTKPALQFILLNVNTDNLEFIASDNEVYYKHVEPVA 60 Query: 60 -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + GS + L D +RK+ ++ GT + + ++F Sbjct: 61 EGITKTGSFLIP-FKLEDALRKVSGTVSLTLE-----GTTLKFEAKGIKASIPVAVYNDF 114 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P E + + L +V + +A AT + R L G+ + ++ + V+TD Sbjct: 115 PKEPTGEAGPAIQFTKEQLLEIVNQCGYASATSDTRPVLKGLNM--SGQNGEFQVVSTDS 172 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 +RL Q ++P++ +P K + +L L + ++ +++ + ++ + Sbjct: 173 YRLVKKVRK---QAIELPALTIPTKTLKSVLESLED-EVDFAMAPFGTQLIIKTDAQEIF 228 Query: 239 VRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKL 295 +RLI +P+ + +D +++VN + A++ V + + + + V L D+L Sbjct: 229 IRLITSTYPDTSKLAVIGDDYIKVKVNTKEITDALETVMLFAEEKSKGKNVLLESKGDQL 288 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMD-ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 ++V + G+ +N N KYL+ ++ +++F+ S Sbjct: 289 RISVKG-ENGEIEHFINA--EGEEFTKTAMNAKYLITAVNAHKKSTT---DLLFKKGKSE 342 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + VFI D+ +++P+RI Sbjct: 343 APVFIMCDDE----------TLVQLILPIRI 363 >gi|255021959|ref|ZP_05293967.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] gi|254968595|gb|EET26149.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC 51756] Length = 401 Score = 147 bits (371), Expect = 3e-33, Method: Composition-based stats. Identities = 78/420 (18%), Positives = 164/420 (39%), Gaps = 56/420 (13%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ + + ++ + +++ + P+ HVL++ D + + ++ + Sbjct: 1 MERQLSIDTLRKIATASAALVKGNSVQPIYDHVLIE--DQRVVLG--NATTQLEWFLDEE 56 Query: 61 VDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 G A L I + L DGA + E G + I G S F L + +++ Sbjct: 57 ERSFGFAPEAYPARDLERIAKSLPDGALV------EFGEQGQIRCGRSRFRLPVYDGAQY 110 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI----NEEDLKLCAV 174 P E + + L+ + +A + R YLNGI + I +E L Sbjct: 111 PVKAEPLPSAWIRVQTQDLERIFPSLRRCVAKNDTRTYLNGIHWQIRRVGEQEASLLVLE 170 Query: 175 ATDGHRLAVAEVDIVAQ---------------------IAKMPSIIVPRKAVGEILRILS 213 ATDGHR A ++ + I+P + + +++L Sbjct: 171 ATDGHRAARFSLEYTPPLDSANDDSAASQGDCSPQGDCSPQGLDAILPVEGLSAWMKLLY 230 Query: 214 SKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQ 270 S+ + ++ + S + L + + +DG +P+ ++ ++ L ++ + ++ Sbjct: 231 SQKIAEFSIAQTRSGVIFQGGGLRLWLTSLDGRYPSLDTILAQLEKRKDVLSLSIADFQR 290 Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329 A+ +I QAV LS + D L + +A + + ++ P+ FN +YL Sbjct: 291 ALTLATIGVGE-SQAVTLSTAPDHLLSVAAKGEERQAEDQIPAQWSGSLPLRYSFNVQYL 349 Query: 330 LEIIDNIS-----SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 ++ +D++ S++ D ++ R D S +KD + V+MP+R Sbjct: 350 MDFVDSVKETTKGSEDTEDPQMALRFDVS---------EKDPTSTFAEVPGGVLVVMPIR 400 >gi|327398176|ref|YP_004339045.1| DNA polymerase III subunit beta [Hippea maritima DSM 10411] gi|327180805|gb|AEA32986.1| DNA polymerase III, beta subunit [Hippea maritima DSM 10411] Length = 365 Score = 146 bits (370), Expect = 4e-33, Method: Composition-based stats. Identities = 73/387 (18%), Positives = 154/387 (39%), Gaps = 28/387 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M IT++ I EL+ + K + ++L++ + + A+ I I Sbjct: 1 MSITIQTKTIKELINELT-LSTSKEKDNILSNILIEIKEDKIIGIAANNITSIEKTIETK 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 D S + ++I++++++ ++N + + +++ FP Sbjct: 60 TDNQLSFIIDPVKFFNILKEIKEETVELELEKN----IITVKSSSFKTKIKTQDPGLFPH 115 Query: 121 TKEEEYVYSFELASSVL-KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 K E + + K L+ T + +I GIF I + +K A ATD + Sbjct: 116 IKHSENIEKICQIQAKKLKKLIRETIYCPDKNDISREYTGIFIEIEQNYIK--ATATDHY 173 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 RL + + I+ I R+ S + +++ SE+ I + E+L +S Sbjct: 174 RL--INIKTENTNDIEANFIIENAGAALINRL--SLEGEIELYKSENEILIKQENLVVSS 229 Query: 240 RLIDGEFPNYQN-VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298 ++I G FP+Y ++ S + + L+ AV R SI+S + K+ + L + Sbjct: 230 KIISGNFPDYNQILLDRSTSNSVEIEKEKLKDAVKRSSILSENKDITAKIDIKEKTLTLI 289 Query: 299 VDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 N + A + +N+ E ++I N K++L+ ++ I + D V+ S+ Sbjct: 290 GQNSEGETAEDIINITPIETEKDLNIKLNSKFILDFLNQIEA-----DTVILLYKSAEEP 344 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + + + Y++ P+ Sbjct: 345 IMFESNEDEYY--------YKYIMTPI 363 >gi|289811520|ref|ZP_06542149.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 119 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G+ TV A +DI R L +GA+I+ E G + + G S F L + P ++FP Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117 Query: 120 ST 121 + Sbjct: 118 NL 119 >gi|113473946|ref|YP_720007.1| DNA polymerase III subunit beta [Trichodesmium erythraeum IMS101] gi|110164994|gb|ABG49534.1| DNA polymerase III, beta subunit [Trichodesmium erythraeum IMS101] Length = 200 Score = 146 bits (369), Expect = 5e-33, Method: Composition-based stats. Identities = 45/192 (23%), Positives = 99/192 (51%), Gaps = 18/192 (9%) Query: 199 IVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 +P KA+ E+ R++S SSV + E+++ + ++ R ++G++P YQ ++P Sbjct: 20 TIPAKALREVERMISMGKSGSSVTLKFDENQVIFELGKQRLTSRKLEGQYPAYQQLLPNQ 79 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVY 314 ++ V+ AV+R+++++ + +K ++ + ++ ++VD D+G ESM Sbjct: 80 FTNQINVDRKKFLGAVERIAVLADQKNNILKCTIDSVNQEISLSVDAQDVGSGRESMAAQ 139 Query: 315 Y-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 ++ P +I FN KYL+E + I S E+ +L+++ + V + N Sbjct: 140 ISSDEPEEIAFNVKYLIEGLKAIPS----ASEISIQLNTATTPVVL---------NPLGG 186 Query: 374 VNAFYVLMPMRI 385 Y++MP+++ Sbjct: 187 FQMTYLIMPVQL 198 >gi|313635498|gb|EFS01734.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067] Length = 175 Score = 146 bits (369), Expect = 6e-33, Method: Composition-based stats. Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 11/177 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169 E+P E + ++ +VLKN++ +T FA++ E+R L G+ + I E L Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKENKL 174 Score = 40.2 bits (93), Expect = 0.48, Method: Composition-based stats. Identities = 28/176 (15%), Positives = 71/176 (40%), Gaps = 12/176 (6%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV--- 186 F + L V A++ L GI +N+E + L +D A + Sbjct: 3 FVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIEN 62 Query: 187 -DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 +++ ++ I++ K G+I+R L ++ ++V+ + + +++ S ++ +D Sbjct: 63 DEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVT-TNYQTNISSGQASFTLNGLD-- 119 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRV-----SIMSSVRIQAVKLSLSSDKLC 296 Y + ++ K +++ L+ + + +I + V + +KL Sbjct: 120 PMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKENKLS 175 >gi|194097592|ref|YP_002000628.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] gi|193932882|gb|ACF28706.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945] Length = 167 Score = 145 bits (366), Expect = 1e-32, Method: Composition-based stats. Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 14/181 (7%) Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 + E+ ++L++ D +++ L + ++ ++ ++IDG+FP++ VIP NDK ++ Sbjct: 1 MLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLS 60 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 L A++RVSI+++ + + +L L L + N + +A E + + Y +++ F Sbjct: 61 RAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNNEQEEAREEIEIAYQGGELEVGF 120 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N YL++++ NI S D++ +N S N N Y++MPMR Sbjct: 121 NIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTVP---------NNPNFKYIVMPMR 166 Query: 385 I 385 I Sbjct: 167 I 167 >gi|302520517|ref|ZP_07272859.1| DNA polymerase III beta subunit domain-containing protein [Streptomyces sp. SPB78] gi|302429412|gb|EFL01228.1| DNA polymerase III beta subunit domain-containing protein [Streptomyces sp. SPB78] Length = 165 Score = 144 bits (364), Expect = 2e-32, Method: Composition-based stats. Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 9/162 (5%) Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 E I + RL++G+ P Y+ + P + + +AV RV++++ R Sbjct: 11 GEGLIGFEGAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERN 69 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 V+LS L + + D +A+E ++ + I FN +LL+ + I S Sbjct: 70 TPVRLSFEQGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV--- 126 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +S + G+ + + Y++MP+R+ Sbjct: 127 --AQLSFTTSTKPALLSGR---PAVDAEADDAYKYLIMPVRL 163 >gi|289807836|ref|ZP_06538465.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 147 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%) Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + F L + +K L+E T F+MA +++RYYLNG+ F +L+ VATDGHRLAV Sbjct: 1 WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAV 58 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243 + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + +L+D Sbjct: 59 CSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVD 117 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 G FP+Y+ V+P + DK L C L+QA Sbjct: 118 GRFPDYRRVLPKNPDKHLEAGCDILKQAF 146 >gi|158421575|ref|YP_001527802.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] gi|158342818|gb|ABW35104.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM 11300] Length = 367 Score = 144 bits (363), Expect = 3e-32, Method: Composition-based stats. Identities = 81/374 (21%), Positives = 146/374 (39%), Gaps = 38/374 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSC------HVLLQANDGLLEIKASGPEIEIT 54 M I V + + LG + + VL+++ L + G ++ Sbjct: 1 MSIAVSKRALSAALGRVTHLTGAR-----LSPGTTRGSVLVESAPDGLTLTVRG-DVNAE 54 Query: 55 GAIPASV---DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 +PA V + + A LL VR F L ++I+ G S + Sbjct: 55 LTVPADVPFHLEPARLVLPAELLSVHVRNAPGEVIHLEF----LRHALDITSGSSRVEVH 110 Query: 112 SFP---ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 + P E + + L+ L +A + E + GI F E Sbjct: 111 TSPSAPEPDAFAVTFPSEGLLLALSVPDLTLAANAVLYAASHEAFQAVFRGILFEGRESG 170 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L+L VA+DG+R+A A D+ + I+ V E+LR+L +D + + + + Sbjct: 171 LRL--VASDGYRVATA--DLPTPPPQPFKAIIHAAHVRELLRLLGGRD-TASLQFDGTHL 225 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVK 287 + +++S+ +DGEFP Y+ VIP V LR++V+RV+IMS ++ Sbjct: 226 TVRAGGITVSLPYMDGEFPAYERVIPAV-TGGFAVPAQALRESVNRVAIMSDKNANNRLE 284 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 L+L+ +L +T D G + + V + + P + N ++L E + Sbjct: 285 LTLAEGRLVLTAHG-DYGTGQDVLEVTDRHGDPPAQLAVNARFLQEALA------PTTGT 337 Query: 346 VVFRLDSSNSSVFI 359 + L S + Sbjct: 338 LRVGLSGSTKPFVL 351 >gi|168184796|ref|ZP_02619460.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] gi|182672169|gb|EDT84130.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf] Length = 381 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 79/400 (19%), Positives = 170/400 (42%), Gaps = 38/400 (9%) Query: 1 MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55 M I V + + + A + + I + + G L I + + + Sbjct: 1 MNIKVNGGEFKKYIGLALKSTASSAVNANDIINI------STDTGKLIILSGSSDFTLKQ 54 Query: 56 AIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + + G+I +S +L I++K+ + +IS F + + + I G +N + Sbjct: 55 ELKNVIISEEGNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAR 113 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E + + +YS L + V K+L++ T +A+A +E R L G + + + +K+ Sbjct: 114 EHTISDILKSDIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKI--T 171 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A DG RL I Q M I++ + + ++ V ++ + ++ + +++ Sbjct: 172 ALDGFRLVSNSAKIENQHEDM--ILIHANNLRNLSSLIDDSTEEVILNKNNNKAIVEVKN 229 Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286 + + EF Y+ +I S ++ V+ L VDR+S++SS + Sbjct: 230 KNYVAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344 + L+ D L + ++ + +N+ N E I FN KY+L+ + NI++ Sbjct: 290 LMKLNKDSLEIDGNSS-VASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTK----- 343 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 E+ +S+ S I K + ++ + N +++P++ Sbjct: 344 EIDMFFNSNVSPAIIINKPEKEEDIEINA-----LVLPVK 378 >gi|23193212|gb|AAN14435.1|AF319585_2 DNA polymerase III beta chain [Bacillus cereus] Length = 160 Score = 143 bits (361), Expect = 5e-32, Method: Composition-based stats. Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 11/163 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 +E+P + E + F++ + +LK+++ +T FA++T E R Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP 160 >gi|23193215|gb|AAN14437.1|AF319586_2 DNA polymerase III beta chain [Bacillus cereus] gi|23193221|gb|AAN14441.1|AF319588_2 DNA polymerase III beta chain [Bacillus thuringiensis serovar galleriae] Length = 160 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 +E+P + E + F++ + +LK+++ +T FA++T E R Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP 160 >gi|23193217|gb|AAN14438.1|AF319587_1 DNA polymerase III beta chain [Bacillus thuringiensis serovar berliner] Length = 160 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 +E+P + E + F++ + +LK+++ +T FA++T E R Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP 160 >gi|262340837|ref|YP_003283692.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella germanica) str. Bge] gi|262272174|gb|ACY40082.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella germanica) str. Bge] Length = 386 Score = 142 bits (359), Expect = 7e-32, Method: Composition-based stats. Identities = 83/378 (21%), Positives = 166/378 (43%), Gaps = 29/378 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKA-SGPEIEITGAIPA 59 M V +L+ L +II N+ + + + L+I E + I Sbjct: 1 MYFFVSSHSLLQKLHTLYQIINSNNSNS--EYFIFEIVKNKLKIIVLCDSENIVNTYIKV 58 Query: 60 SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN----FYLQSF 113 +V + VS L+ D++ + + FFK+ ++ + G F+ S Sbjct: 59 NVKKYTKEKVVVSTKLMIDVLTTFPN--ETLFFKKKKIALNIFSEQGSYKIPIYFHKYSM 116 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + + L S++L ++ +T FA+ ++ + LNG+FF + + Sbjct: 117 NFFKKKESIFRSSTMKITLFSNILSKILNQTLFAVGDKKFQPILNGVFFQFSPYEANF-- 174 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSES-RIHLN 231 VATD R+ + + K +P+K++ I IL + K+S++ + + I + Sbjct: 175 VATDTFRMVKYTIK-NLKFDKYIEFTIPKKSLDIIREILKNEKNSNIVIEYNNKINIVFH 233 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 ++ S RLI+ ++PNY +VIP +N D +N L + R+SI S + + L L Sbjct: 234 FQNHIFSCRLINQKYPNYNSVIPNNNCDVSFVINRLLLLNTIRRISIFSKKKKNFIHLHL 293 Query: 291 SSDKLCMT----VDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVD 343 + +KL + ++N + G I+ ++ + + + FN K+L+EI+ +++ + Sbjct: 294 NRNKLKIFEQKAINNYNFGSKIKCKPIFDDLRKIESIQMGFNSKFLIEILSSLN-----E 348 Query: 344 DEVVFRLDSSNSSVFIRG 361 + + F L SN +R Sbjct: 349 NFISFELYHSNKIGILRP 366 >gi|169834653|ref|YP_001693398.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str. Okra] gi|169123201|gb|ACA47036.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str. Okra] Length = 381 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 169/400 (42%), Gaps = 38/400 (9%) Query: 1 MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55 M I V + + + A + + I + ++ L I + + + Sbjct: 1 MNIKVNGGEFKKYIGLALKSTASSAVNANDIINI------STDNSKLIILSGSSDFTLKQ 54 Query: 56 AI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + + G+I +S +L I++K+ + +IS F + + + I G +N + Sbjct: 55 ELSNVIITEEGNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAR 113 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E + + +YS L + V K+L++ T +A+A +E R L G + + + +K+ Sbjct: 114 EHTISDILKSDIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKI--T 171 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A DG RL I Q M I++ + + ++ V ++ + ++ + +++ Sbjct: 172 ALDGFRLVSNSAKIENQHEDM--ILIHANNLRNLSSLIDDSTEEVILNKNNNKTIVEVKN 229 Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286 + + EF Y+ +I S ++ V+ L VDR+S++SS + Sbjct: 230 KNYVAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344 + L+ D L + ++ + +N+ N E I FN KY+L+ + NI++ E+ Sbjct: 290 LMKLNKDSLEIDGNSS-VASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEID-- 346 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S+ S I K + + + N +++P++ Sbjct: 347 ---MFFNSNVSPAIIINKPEKEEGIEINA-----LVLPVK 378 >gi|169834795|ref|YP_001715742.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str. Loch Maree] gi|169408902|gb|ACA57312.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str. Loch Maree] Length = 381 Score = 142 bits (358), Expect = 1e-31, Method: Composition-based stats. Identities = 78/400 (19%), Positives = 170/400 (42%), Gaps = 38/400 (9%) Query: 1 MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55 M I V + + + A + + I + ++ L I + + + Sbjct: 1 MNIKVNGGEFKKYIGLALKSTASSAVNANDIINI------STDNSNLIILSGSSDFTLKQ 54 Query: 56 AI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + + G+I +S +L I++K+ + +IS F + + + I G +N + Sbjct: 55 KLSNVIISEEGNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAK 113 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E + + +YS L + V K+L++ T +A+A +E R L G + + + +K+ Sbjct: 114 EHTISDILKSDIIYSLNLDAKVFKSLIDTTSYAVAQDESRPILLGQYIELEKNLIKI--T 171 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A DG RL I Q M I++ + + ++ V ++ + ++ + +++ Sbjct: 172 ALDGFRLVSNSAKIENQHEDM--ILIHANNLRNLSSLIDDSTEEVILNKNNNKAIVEVKN 229 Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286 + + EF Y+ +I S ++ V+ L VDR+S++SS + Sbjct: 230 KNYVAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDD 344 + L+ D L + ++ + +N+ N I FN KY+L+ + NI++ E+ Sbjct: 290 LMKLNKDSLEIDGNSS-VASMKGEVNIINNNFQEEFTIGFNPKYILDALKNINTKEID-- 346 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S+ S V I K + +++ N +++P++ Sbjct: 347 ---IFFNSNVSPVIIINKPEKAEDISVNA-----LVLPVK 378 >gi|23193186|gb|AAN14417.1|AF319577_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 160 Score = 141 bits (357), Expect = 1e-31, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 +E+P + E + F++ + +LK+++ +T FA+++ E R Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRP 160 >gi|23193183|gb|AAN14415.1|AF319576_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 160 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 11/163 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 ++ GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIEQTGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 +E+P + E + F++ + +LK+++ +T FA+++ E R Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRP 160 >gi|21233713|ref|NP_640011.1| DNA polymerase III beta chain [Proteus vulgaris] gi|21202897|dbj|BAB93613.1| DNA polymerase III beta chain [Proteus vulgaris] Length = 422 Score = 141 bits (356), Expect = 2e-31, Method: Composition-based stats. Identities = 68/388 (17%), Positives = 154/388 (39%), Gaps = 47/388 (12%) Query: 29 VSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT--VSAHLLYDIVRKLQDGAQ 86 V + L L + G + V A + + R ++ Sbjct: 49 VLEMLTLTLVGDNLSALGVDYNTGQVISRGVVHKANGDMVASVPATHISTLFRNMKGEET 108 Query: 87 ISFFKENELGTEVNISHGDSNFYLQ-SFPESEFPSTKEEEYVYSFELASSVLKNLVERTH 145 ++ + E + I G + + + + YS +++L ++R Sbjct: 109 VNVRCDQERN-RLIIRTGKNAYNIPLCMDAIPVVDESDLTAKYSITFPANMLHRTLQRVM 167 Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI------- 198 + ++R+Y+NG+F +++ AVATDGHR++V D++ I Sbjct: 168 HSAGKNDVRHYMNGVFLSLDKN--VFNAVATDGHRMSVMTEDVLFTDEPQEDITSPVAPV 225 Query: 199 ---------IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249 I+P + ++++L++ S ++ SES + N+ +++ LI+G +P++ Sbjct: 226 SLSGTSSGVILPIEVCPILMKLLAANKGSFRMDYSESYLTFNLGDVTVVSNLINGRYPDW 285 Query: 250 QNV--IPCSNDKELRVNCTNLRQAVDRV-------SIMSSVRIQAVKLSLSSDKLCMTVD 300 + V + N ++ VN LR+A+ R ++ + V S+ L + Sbjct: 286 RRVAGVVKHNTEKFSVNALVLREALSRALPLINAGAVNKNSNSTGV-FVFKSNALMIKSP 344 Query: 301 NPDMGKAIESMNVYY----NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 + ++ + E +++ E ++I N +YLL ++++ S + ++ F L + + Sbjct: 345 SQNLIECKEVLDIEKVAGEQEDKIEIGMNCEYLLRSLNSLVSHSGEEADITFALKDTLTG 404 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + I D ++MP+R Sbjct: 405 MEIGFGDDCCD-----------IIMPVR 421 >gi|23193189|gb|AAN14419.1|AF319578_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] gi|23193197|gb|AAN14425.1|AF319580_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] gi|23193200|gb|AAN14427.1|AF319581_2 DNA polymerase III beta chain [Bacillus mycoides] gi|23193203|gb|AAN14429.1|AF319582_2 DNA polymerase III beta chain [Bacillus weihenstephanensis] Length = 160 Score = 141 bits (355), Expect = 3e-31, Method: Composition-based stats. Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 DAGKEIVEIKQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 +E+P + E + F++ + +LK+++ +T FA+++ E R Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRP 160 >gi|240047137|ref|YP_002960525.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae HRC/581] gi|239984709|emb|CAT04681.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae] Length = 366 Score = 140 bits (353), Expect = 3e-31, Method: Composition-based stats. Identities = 62/346 (17%), Positives = 144/346 (41%), Gaps = 19/346 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 MK +++ + + I + P L+A L I ++ E+ I Sbjct: 1 MKFKIKKEIFEKEIERTSNGIFVQGNSP-LSGYYLKATREGLSIISTNGELSFKSFINSD 59 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G + L +I++K ++ F TE IS +++F + Sbjct: 60 KIDIIEVGICLIDGFFLKNIIKKSEN-----FINFEIKSTEALISWENASFSKVLKDHTI 114 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 FP + ++ + LK ++ THFA ++ L+ I I +D L ATD Sbjct: 115 FPEVNFDPIGIKVKVNAKELKKAIKNTHFAASSNVNSPILSSIN--IKSQDNILIFSATD 172 Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +R A ++ I + + + + + I S + +++ +SE++++ ++L++ Sbjct: 173 TNRFASDKISISEPVD--IDVSINSENLKNF--IPSEVEGEIELFVSENKVNFTYDNLTI 228 Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++++ + + NVIP L++ + +D+ ++++ + A+ LS ++ Sbjct: 229 QTKVLNVPYKDISNVIPKPESLIYRLKIEKKEILSLIDKATVIAPGKDSAITFHLSKKEI 288 Query: 296 CMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSD 339 ++ + G++ + + Y+ + I N+KYL + I D Sbjct: 289 TASISKQETGQSKVKSDKVIKYSGEDVLINVNFKYLKDAISVFDKD 334 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 33/244 (13%), Positives = 92/244 (37%), Gaps = 12/244 (4%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+ V ++ + + + P+ + +++ D +L A+ + I S Sbjct: 126 KVKVNAKELKKAIKNTHFAASSNVNSPILSSINIKSQDNILIFSATDTNRFASDKISISE 185 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFPS 120 V +++++ L + + +G F EN++ T N++ + S Sbjct: 186 PVDIDVSINSENLKNFIPSEVEGEIELFVSENKVNFTYDNLTIQTKVLNVPYKDISNVIP 245 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 E +Y ++ + +L+++ ++ I FH++++++ + + Sbjct: 246 KPE-SLIYRLKIEKKEILSLIDKATVIAPGKDSA-----ITFHLSKKEITASISKQETGQ 299 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSMS 238 V ++ + I V K + + + + D + + + E +RI + E Sbjct: 300 SKVKSDKVIKYSGEDVLINVNFKYLKDAISVF---DKDINIFVDERKTRILIISEHEKTI 356 Query: 239 VRLI 242 +L+ Sbjct: 357 TQLV 360 >gi|295099697|emb|CBK88786.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Eubacterium cylindroides T2-87] Length = 196 Score = 139 bits (350), Expect = 9e-31, Method: Composition-based stats. Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 11/201 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M +++R E L R I + +P + + + + S + I I Sbjct: 1 MHFSIDRKYFYEKLSVVSRAISVFSPLPALSGICIDVKSDQIILTGSDSNVSIRSTIVRG 60 Query: 58 ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +D GSI + + L +I+RK+ D + + + V IS + F L Sbjct: 61 ELNQLDIDSTGSIVIESKYLLEIIRKM-DCTMVELELVD--YSLVRISSDNGQFNLNGIQ 117 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 +E+P+ + SFEL S LK++V +T FA + ++ R LNG+ F + L Sbjct: 118 SNEYPNIDFSQPTNSFELKSKDLKDIVSQTSFACSDKDTRPVLNGVNFKASNN--TLYCS 175 Query: 175 ATDGHRLAVAEVDIVAQIAKM 195 TD +RLA + + + Sbjct: 176 GTDSYRLARKVLPLQINHDSI 196 >gi|229587310|ref|YP_002860348.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] gi|229260366|gb|ACQ51403.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str. 657] Length = 381 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 75/400 (18%), Positives = 169/400 (42%), Gaps = 38/400 (9%) Query: 1 MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55 M I V + + + A + + I +S + + L I + + + Sbjct: 1 MNIKVNGGEFKKYIGLALKSTASSAVNANDIINISTN------NDKLIILSGSSDFTLKQ 54 Query: 56 AI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + + G+I +S +L I++K+ + +IS F + + + I G +N + Sbjct: 55 ELSNIIISEEGNINISVTILNAIIKKMSN-EEISLFIDPKNNDVLKIKQGRNNSKIALAK 113 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 E + + +YS L + K+L+E T +A+A +E R L G + + +K+ Sbjct: 114 EHTISDILKSDIIYSLNLNPKIFKDLIESTSYAVAQDESRPILLGQYIELENNLIKI--T 171 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 A DG RL I + I++ + + ++ + ++ + ++ + +++ Sbjct: 172 ALDGFRLISNSAKIENKHKD--KILIHANNLKNLSSLIDDSTEELILNKNNNKAIVEVKN 229 Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286 + + + EF Y+ +I S ++ V+ L VDR+S++SS + Sbjct: 230 KNYAAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289 Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344 + L+ D + + ++ + +N+ N E I FN KY+L+ + NI++ E+ Sbjct: 290 LMKLNKDSIEIDGNSS-VASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEID-- 346 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +S+ S I K + +++ N +++P++ Sbjct: 347 ---IFFNSNVSPAIIINKPEKAEDISVNA-----LVLPVK 378 >gi|34764154|ref|ZP_00145022.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886072|gb|EAA23380.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 307 Score = 139 bits (350), Expect = 1e-30, Method: Composition-based stats. Identities = 63/292 (21%), Positives = 124/292 (42%), Gaps = 14/292 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59 M I V R + L + + ++ P+ + + + + + + I +I Sbjct: 1 MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVN 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 V G I S ++ + +++++D + E G + I DS ++P Sbjct: 61 EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117 Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 +T E E + FE+ S L N+ E+ F+ T + +N I + L ++ Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFIS 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234 T+ +RL + +I I S+ VP + I++I+ D+ V KV E+ ++ + Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233 Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285 + +LI+ FPNY ++ S DK+L +N L + R+ I S ++ Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSES 285 >gi|23193209|gb|AAN14433.1|AF319584_2 DNA polymerase III beta chain [Bacillus cereus] Length = 156 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 11/158 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V GSI + A +IV+KL + EN L T+ I+ G S F L Sbjct: 61 ENGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 +E+P + E + F++ + +LK+++ +T FA++T Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155 >gi|332294863|ref|YP_004436786.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM 14796] gi|332177966|gb|AEE13655.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM 14796] Length = 370 Score = 138 bits (349), Expect = 1e-30, Method: Composition-based stats. Identities = 65/385 (16%), Positives = 169/385 (43%), Gaps = 37/385 (9%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ ++ ++ +++ + I +K+ + + ++ + A D + +++ E+EIT Sbjct: 18 RLELQTKELNKIIQDLSKNI-KKHPVEILRNIQISAQDKHIIFRSTDLEVEITYFFETEQ 76 Query: 62 DVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ I + ++ L ++++ + F+ ++ I D + + + FP Sbjct: 77 EIKIDPILIESNELSNLIKNYPNEKINFEFQ----NEKLIIEGEDLSATIPLKQDPNFPD 132 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + +++K +E+ + + +G+ F E+ L + ATDG R Sbjct: 133 PIDTSKAQPKSINFNLIKQAIEKVISSSSQSSDSKM-SGVNFKTKEKTLTI--AATDGFR 189 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSV 239 LA+ ++++ +I + + +K E+++ D++V +S +++ L+ +SV Sbjct: 190 LAIFKINLDEEID--MNFTISKKCAQEVIKF----DATVPISYQTQTHWVLSTHEKMLSV 243 Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 + ++ E+PNY+ IP N + +N + + + I +S + + VK+SL + L + Sbjct: 244 KKLNYEYPNYEKAIPSDNKYKFYINREDFIKKL----IFTSSQSEIVKISLKDNTLNIQS 299 Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 + + K + ++ F YL++ + ++EV+F N + + Sbjct: 300 SDSRI-KTKTLIKSVEEVKDIEFLFKSSYLIDGLKIFD-----EEEVLFTYKDENKPITL 353 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384 +N +N Y+ +P R Sbjct: 354 -----------ENNINTTYITLPAR 367 >gi|23193206|gb|AAN14431.1|AF319583_2 DNA polymerase III beta chain [Bacillus cereus] Length = 156 Score = 138 bits (348), Expect = 1e-30, Method: Composition-based stats. Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 11/158 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 M+ T+++ ++ + + + + TIP+ + + A + + + S +I I IP Sbjct: 1 MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 + GSI + A +IV+KL + EN T+ I G S F L Sbjct: 61 EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150 +E+P + E + F++ + +LK+++ +T FA++T Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155 >gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str. Okra] gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str. Okra] Length = 561 Score = 138 bits (347), Expect = 2e-30, Method: Composition-based stats. Identities = 51/239 (21%), Positives = 101/239 (42%), Gaps = 35/239 (14%) Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205 F A +EIR LNGI + NE +A DG+RLA+ + + + +IV + Sbjct: 356 FQKAKDEIRPILNGICINKNE------FIALDGYRLALRKGNFETKEP----VIVAADLI 405 Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 I ++ + +VK+ +++ + + L + G + NY ++IP + + ++ + Sbjct: 406 KVINKV--KYECNVKIYYNDNYVKFKFDDLEIVGYRRQGNYINYNSIIPENYNTKVTLKI 463 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325 + + + + V L +DKL + +N D+ ES+ + P++I FN Sbjct: 464 KPILDILK---DYKKNKFKVVDLDFQNDKLIIKANN-DIATVEESITIELQGEPLEISFN 519 Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 YL++ N D L + + IR + N +++P+R Sbjct: 520 ADYLIDAFKN-------YDNATLELTYCVNPMVIR------------ENNKLDLVLPVR 559 >gi|237751288|ref|ZP_04581768.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879] gi|229372654|gb|EEO23045.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879] Length = 370 Score = 137 bits (346), Expect = 2e-30, Method: Composition-based stats. Identities = 77/394 (19%), Positives = 169/394 (42%), Gaps = 42/394 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61 I++++S + + + + + +KN I ++ ++ L+ D L +KA+ EI I + + Sbjct: 2 ISIDKSILDQAITNMQSAVNKKNVIDITANISLETIDNNLILKATDHEIYIRTILKTNSL 61 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 V+ + + ++ L D I L + + S F + F +E P + Sbjct: 62 QGEIKCAVNGEAIGNFIKGLNDSEVIIEQDNENLYIK---QNNASVFKIPIFEINELPFS 118 Query: 122 KEEEYV----YSFELASSVLKNLVERTHFAMATEEIRYY-LNGIFFHINEEDLKLCAVAT 176 + + S ++ ++ L +++ +E + GI F + ++++ + AT Sbjct: 119 QNYKNEQQGFQSIDINNNFLLQSLKKIMHCCNDKETFNIAMQGILFEVKDKEINI--AAT 176 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNI 232 D RL + + K I+P+K + EIL++ S+ + +S + Sbjct: 177 DSKRLGYIQKQ--TECDKDFISIIPKKTLQEILKLFSTDCELYIKPIQDSNKIETLCFVS 234 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 E++ +LI+ FP+++++I L++N + + +++++ + Q K++ Sbjct: 235 ENIEFYAKLINANFPDFKSIIANKPQLPTLKINKEKILKTLNQMNAIC----QRAKVTFE 290 Query: 292 SDKLCM-TVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 S+K+ T++ + A ++N N PM I ++LLE I NI DE Sbjct: 291 SNKIIFETLEGINGASASITINDIENHKAEPMTIGLVNRHLLECISNIK-----QDEFEI 345 Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 +D +F+ KD + V+MP Sbjct: 346 IIDDPYKPIFVITKDFEE------------VIMP 367 >gi|30171298|gb|AAP20073.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|30171302|gb|AAP20075.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 200 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 67/206 (32%), Positives = 119/206 (57%), Gaps = 7/206 (3%) Query: 50 EIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF 108 E E+ I S GSITVS L +I R + + I E +++IS +SN+ Sbjct: 1 ETELISNIEISKTYTPGSITVSGQKLLNICRNSSELSDIKISLNKE---KIHISLENSNY 57 Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168 L + P FP+ ++V F ++S +LK ++E+THF+M +++RYYLNG+ + Sbjct: 58 ILNTLPAENFPNHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLE--KNK 115 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L VATDG+RL +A+ + + + S I+PRK + E+ ++L+ + + V + ++ I Sbjct: 116 TSLYTVATDGYRLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNI 174 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIP 254 + IE L +V+LI+GE+P+Y++++ Sbjct: 175 KIYIEKLIFTVQLIEGEYPDYKSILS 200 >gi|260469755|ref|ZP_05813914.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] gi|259028487|gb|EEW29804.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum WSM2075] Length = 384 Score = 137 bits (345), Expect = 3e-30, Method: Composition-based stats. Identities = 72/383 (18%), Positives = 146/383 (38%), Gaps = 44/383 (11%) Query: 23 RKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA--HLLYD--IV 78 +N I + H ++ L + S +IE IP G+ V+A + + I Sbjct: 24 SRN-IEILDHARMEVARKKLTLTMSDLDIEACATIPC----EGASIVAAIPRAVLEFFIA 78 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138 R + +++ T V HG + P ++F +S + ++ L Sbjct: 79 RDGGGDDSGTLTFADDMKT-VVARHGKGRLTMPILPGADFFLIGAGTQDWSMAIRANELV 137 Query: 139 NLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195 L+ AM +E R+++ G+ H+ + L ATDGHR+ V+ Sbjct: 138 ELLRTCVSAM--DETRHFIQGVLLHVAAGEDGASALRTAATDGHRVHTVGVEAPELTGGF 195 Query: 196 P-------SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248 I +P + V E++RI +S V +S ++ + + E++ ++ +LID F + Sbjct: 196 AERQEGHQGITIPDRTVKELIRIFDGDESEVTLSGAKGIVTVEGEAIRVTSKLIDAAFAD 255 Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIM-------SSVRIQAVKLSLSSDKLCMTVDN 301 Y ++ + V L A+ R+ ++ + + ++++ L + + Sbjct: 256 YARLLQAPGAFRISVAAKALDAAIGRLLVLPRKDGKGKAETARPIRMTPVDGGLKLEIKG 315 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 D A + ++ I N +Y+ + + +V I G Sbjct: 316 ND-ADAEDLIDCEVEGQGEPIVVNCRYIRDALAAAGGTKVTF-------------APIEG 361 Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384 + DN ++F +LM MR Sbjct: 362 NAIGVRMLPDNDRSSF-LLMQMR 383 >gi|158314395|ref|YP_001506903.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] gi|158109800|gb|ABW11997.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec] Length = 409 Score = 136 bits (344), Expect = 4e-30, Method: Composition-based stats. Identities = 70/401 (17%), Positives = 143/401 (35%), Gaps = 37/401 (9%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPASVDVCGSI 67 D+L L +++RK+ P L+ A+ DG L + + P+ ++ +P G Sbjct: 21 DLLAALATVGAVLDRKSRPP-WNATLITADPDGELTLTGASPDATVSVRLPGVARSAGRF 79 Query: 68 TVSAHLLYDIVRKL------QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 V L + + L +D ++ + I+ GD L P E P Sbjct: 80 LVDGWALTQMCKALVRGEHRRDTDELPVQLDGSFPPAPTITIGDYTVPLTGLPPEEHPGA 139 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + L + L+ V+R A+ ++ L G+ + ATD +RL Sbjct: 140 CQPAPTIA-TLDRAALRAAVDRVLPAVGRDDTLRVLTGMHMSFTPGLATV--AATDRYRL 196 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK-----VSLSESRIHLNIESLS 236 AV + +++P K + + ++ R+ + Sbjct: 197 AVDVLPATVTRPAGQELLLPAKILAACAETWTGSSVTIGHRRAASVHDVDRVTFTCGQTT 256 Query: 237 MSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRV-SIMSS--VRIQAV---KLS 289 +S+ G +P ++ ++ + + V RV +I+++ + + L+ Sbjct: 257 VSLVETGGSYPPWRKLLGSLDPQHTAVFDRATVAAHVARVLAILTAHPSTSRPIMTMTLT 316 Query: 290 LSSDKLCMTVDNPDMGKAIESMNV-----YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 L+ D L + P+ G A S + FN YL + + +S D V+ Sbjct: 317 LTPDGLRVAPLLPEHG-ARVSAPTLPATTSITGGTVRWAFNAAYLRDALAALSGDTVLFS 375 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V + + + + ++LMP+RI Sbjct: 376 ----GQADVSKPVLLTSPEHQTASAPP----YRHLLMPIRI 408 Score = 39.8 bits (92), Expect = 0.76, Method: Composition-based stats. Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 11/178 (6%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63 T++R+ + + + R +T+ V + + GL + A+ +PA+V Sbjct: 148 TLDRAALRAAVDRVLPAVGRDDTLRVLTGMHMSFTPGLATVAATDRYRLAVDVLPATVTR 207 Query: 64 CG--SITVSAHLL---YDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + + A +L + V + G + L S Sbjct: 208 PAGQELLLPAKILAACAETWTGSSVTIGHRRAASVHDVDRVTFTCGQTTVSLVETGGSYP 267 Query: 119 PS---TKEEEYVYSFELASSVLKNLVERT--HFAMATEEIRYYLNGIFFHINEEDLKL 171 P + ++ + + V R R + + + + L++ Sbjct: 268 PWRKLLGSLDPQHTAVFDRATVAAHVARVLAILTAHPSTSRPIMT-MTLTLTPDGLRV 324 >gi|313887222|ref|ZP_07820917.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332299737|ref|YP_004441658.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM 20707] gi|312923313|gb|EFR34127.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica PR426713P-I] gi|332176800|gb|AEE12490.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM 20707] Length = 402 Score = 136 bits (343), Expect = 5e-30, Method: Composition-based stats. Identities = 70/415 (16%), Positives = 153/415 (36%), Gaps = 43/415 (10%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58 MK TV +++ LL + R++ N ++P + L + + + + TG I P Sbjct: 1 MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESE 117 D ++ L D ++ L + E G +++ H + Sbjct: 61 LECDGEMRFLIAPTPLLDYIKSLPVQPLTMEMQTTEEGARFIHLIHSTGYLDIPIGDADL 120 Query: 118 F---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + S ++ E + SS L + A + R L+G+ F + + L+LC Sbjct: 121 YVSRESPEDTEGAAMMSMNSSSLLAGISAVLPAAYPDTSREQLHGVHFVMLTDRLELC-- 178 Query: 175 ATDGHRLAV------AEVDIVAQIAK----MPSIIVPRKAVGEILRILSS-KDSSVKVSL 223 ATD +L V+ ++A+ PS +P K + IL + + V Sbjct: 179 ATDNVQLVRYIDYDARIVEKEDEVAQASLRDPSFTLPIKVSSFLQSILPNFANEEALVVF 238 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-- 281 + ++ + + ++ ++ +FPNY ++P + + ++ L++A RV+ +S++ Sbjct: 239 NNKQVEVRFGTYNVVSQVSVLDFPNYNGLLPDAMTYMIEIDGQVLQRATTRVNYLSNIVG 298 Query: 282 ---RIQAVKLSLSSDKLCMTVDNPDMG------KAIESMNVYYNE--CPMDICFNYKYLL 330 + ++ + M G E + V Y E M I F + Sbjct: 299 LGADSSLLCITFEEHAMVMKGGFYAQGANTPGVDVEERIPVDYPEQMEGMQITFKTNTFI 358 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + ++ + + + ++ + I + + P+RI Sbjct: 359 KFLKAFNA-----ESLQLHITNATQPIMITPTKVADQTDLRGITA------PVRI 402 >gi|320108254|ref|YP_004183844.1| DNA polymerase III subunit beta [Terriglobus saanensis SP1PR4] gi|319926775|gb|ADV83850.1| DNA polymerase III, beta subunit [Terriglobus saanensis SP1PR4] Length = 370 Score = 136 bits (342), Expect = 7e-30, Method: Composition-based stats. Identities = 70/389 (17%), Positives = 144/389 (37%), Gaps = 42/389 (10%) Query: 10 ILELLGHACRIIERKNT-IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 + + I + + IP + ++ + I A+ + I + + Sbjct: 11 LRSAVEIVRPAIAKASVGIPALRTIKMEKMPEGMGISANNLNVGIRVNLLTEFPDDRPVA 70 Query: 69 VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128 +SA L + V+ L FK + + S G + + + P Sbjct: 71 ISAERLLNYVKLLDTEEVSITFKSD----KARFSSGACRAQVPTVEGA--PEFPMPTEGQ 124 Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188 + +A VL + FAM E R+ ++G +D L A DG+R++V +++ Sbjct: 125 TIAMAQDVLLRALRHVAFAMTESENRFVVDGALL--TAKDGYLEVAALDGYRISVYRIEM 182 Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS-----MSVRLID 243 I++P +L L D++V + L ES I + +E + + + Sbjct: 183 KG--LPECEILLPGDLCDALLATLRDCDATVSIQLGESAIGVRMEGIEAQIIEIRAGRLA 240 Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 +F Y ++P + + + L A R M+ ++ Q +++ + + + PD Sbjct: 241 KKFAPYNKILPENRRLAIVLPAPRLLLAAQRCIAMADIKTQCIRMYFERESITLNGATPD 300 Query: 304 MGKAIESMNVYYNECP---MDICFNYKYLLEIIDNISSDEVVD----DEVVFRLDSSNSS 356 G A E++++ P + + F +YL++ + + D VD D+V+ Sbjct: 301 SGDADEAVSI--EGGPQTKLAMAFKGEYLVDALKKLRGDVTVDIGEKDQVMMLYAEP--- 355 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 Y +MPMR+ Sbjct: 356 --------------FEGETLRYGVMPMRV 370 >gi|228471322|ref|ZP_04056125.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3] gi|228306899|gb|EEK16007.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3] Length = 402 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 70/416 (16%), Positives = 156/416 (37%), Gaps = 45/416 (10%) Query: 1 MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58 MK TV +++ LL + R++ N ++P + L + + + + TG I P Sbjct: 1 MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESE 117 D ++ L D ++ L + E G +++ H + Sbjct: 61 LECDGDMHFLIAPTPLLDYIKSLPVQPLTLEMQTTEEGARFIHLIHSTGYLDIPIGDAEL 120 Query: 118 F---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + S ++ E + SS L + + A + R L+G+ F + + L+LC Sbjct: 121 YVSRESPEDSEGAAMMSMNSSSLLSGISAVLPAAYPDTSREQLHGVHFVMLSDRLELC-- 178 Query: 175 ATDGHRLAV------AEVDIVAQIAK----MPSIIVPRKAVGEILRILSS-KDSSVKVSL 223 ATD +L V+ ++A+ PS +P K + IL + + V Sbjct: 179 ATDNVQLVRYIDYDARIVEKEGEVAQASLRDPSFTLPIKVSSFLQSILPNFANEEALVIF 238 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-- 281 + ++ + + ++ ++ +FPNY ++P + + ++ L++A RV+ +S++ Sbjct: 239 NNKQVEVRFGTYNVVSQVSVLDFPNYNGLLPDAMTYMIEIDGQVLQRATTRVNYLSNIVG 298 Query: 282 ---RIQAVKLSLSSDKLCMT-------VDNPDMGKAIESMNVYYNE--CPMDICFNYKYL 329 + ++ + M + P + E + V Y E M I F Sbjct: 299 LGADSSLLCITFEEHAMVMKGGFYAQGANTPGV-DVEERIPVDYPEQMEGMQITFKTNTF 357 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ + ++ + + + ++ + I + + P+RI Sbjct: 358 IKFLKAFNA-----ESLQLHITNATQPIMITPTKVADQTDLRGITA------PVRI 402 >gi|34762965|ref|ZP_00143943.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27887353|gb|EAA24445.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 319 Score = 135 bits (340), Expect = 1e-29, Method: Composition-based stats. Identities = 65/341 (19%), Positives = 147/341 (43%), Gaps = 33/341 (9%) Query: 50 EIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109 EIE+ ++ G + + LL + ++ L + I+F K++ + ++ F Sbjct: 5 EIELIRYANCEIESEGQVLIKPALLLEYIK-LVEEDNINFEKKDG-----YLIVNNAEFS 58 Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEED 168 + ++ +P E + + +E+ F + L N I + Sbjct: 59 I--LDDNTYPELTEIIPIVIATENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNI 116 Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228 L+L V+TD RL + ++ I K I+VP ++ I +IL D ++ S+ ++ Sbjct: 117 LEL--VSTDSFRLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKL 172 Query: 229 HLNIESLSMSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQ 284 + + + +L+ FP+++ +I ++DK N L A+ +V + S+ Sbjct: 173 IVTWKDAYFTCKLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSNDSKN 232 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344 + ++L ++ + + K + +N+ + + N KY+ E IDN+ + +++ Sbjct: 233 VATFNFKGNQLVISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIIIE- 290 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++NSS +R ++ ++ N Y++MP+ I Sbjct: 291 -------ATNSSSMLRFMEERNE-------NYIYLIMPVNI 317 >gi|119394192|gb|ABL74458.1| DNA polymerase III beta subunit [Buchnera aphidicola] gi|119394198|gb|ABL74461.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 195 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 117/204 (57%), Gaps = 9/204 (4%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ +E L AVATDG+R+ + + I + S+I+PRK + E+ ++L+ Sbjct: 1 RYYLNGMLL--KKEKTLLYAVATDGYRMGITKTSIQEDVI-PFSVIIPRKGIVELYKLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 K ++ + ++ I + IE L +++LI+G +P+Y +++ + + +N L+Q++ Sbjct: 58 IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTSILLKHKNCPIILNSQQLKQSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I++S +++ + ++K + DN + +A +S + Y ++I N Y+L+I+ Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDN-EEERAEDSFKINYFNNEVEISINVYYILDIL 176 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + ISS + L+ SN+S+ Sbjct: 177 NVISSK-----NIFLFLNESNNSI 195 >gi|301633590|gb|ADK87144.1| DNA polymerase III, beta subunit [Mycoplasma pneumoniae FH] Length = 380 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 58/384 (15%), Positives = 154/384 (40%), Gaps = 31/384 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ + ++++ ++L +I N + P ++L++A + + A+ + Sbjct: 1 MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60 Query: 60 SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++D G + V + +++ +++ I K+ + + +N L + + E Sbjct: 61 NIDVLEEGEVIVKGKIFSELINGIKEDIIIIQEKDQT----LLVKTKKTNINLNTIDKKE 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLV-----ERTHFAMAT-EEIRYYLNGIFFHINEEDLKL 171 FP + + V E +++ + ++ A++T E NG+ F+ ++ Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFN-GSNGKQI 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227 A+D ++L+V E+ Q + IV + I + + + Sbjct: 176 FLEASDSYKLSVYEIK---QKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDL 232 Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283 + + +++ ++ I+ FP + + ++ + L+ A+ R+ ++ + R Sbjct: 233 STELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERF 292 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + +++ L + + ++G ++E + + ++I N LLE ID+ + Sbjct: 293 FLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDT---- 348 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDS 366 DE+ SN I ++ Sbjct: 349 -DEIELYFQGSNKYFLISSNNEPE 371 >gi|119394194|gb|ABL74459.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 195 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 58/204 (28%), Positives = 116/204 (56%), Gaps = 9/204 (4%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ +E L AVATDG+R+ + + I + S+I+PRK + E+ ++L+ Sbjct: 1 RYYLNGMLL--KKEKTLLYAVATDGYRMGITKTSIQEDVV-PFSVIIPRKGIVELYKLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 K ++ + ++ I + IE L +++LI+G +P+Y ++ + + +N L+Q++ Sbjct: 58 IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTGILLKHKNCPIILNSQQLKQSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I++S +++ + ++K + DN + +A +S + Y ++I N Y+L+I+ Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDN-EEERAEDSFKINYFNNEVEISINVYYILDIL 176 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + ISS + L+ SN+S+ Sbjct: 177 NVISSK-----NIFLFLNESNNSI 195 >gi|20372920|emb|CAD30325.1| DNA polymerase III subunit protein [Streptomyces caespitosus] Length = 117 Score = 134 bits (339), Expect = 2e-29, Method: Composition-based stats. Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI VER + E + A R + + +PV +LL+A +G L + E+ ++ A Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGSLSLSGFDYEVSARVSVDAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V+ G++ VS LL DI R L + + + G V + G S F L + P E+P+ Sbjct: 61 VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRVTVVCGSSRFTLHTLPVEEYPA 116 Query: 121 T 121 Sbjct: 117 L 117 >gi|291319939|ref|YP_003515197.1| DNA polymerase III subunit beta [Mycoplasma agalactiae] gi|290752268|emb|CBH40239.1| DNA polymerase III, beta chain [Mycoplasma agalactiae] Length = 369 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 148/377 (39%), Gaps = 27/377 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + ++ + +++ R + +++ + + AN ++ +A+ I I Sbjct: 1 MKIIINKNFLDDIIEVVSRFSDPISSLYGMRCIKITANHNFVKFEATNEITNIVKKIKVD 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G + V A+ +I++KL +I ++ I DS + L Sbjct: 61 DNKIIVEEDGELLVQANYFKNIIKKLNGFIEIK-----TYFNKMEIKQQDSVYTLTLNEI 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S FP E + F++ + K V+ FA + Y I F + KL A Sbjct: 116 SSFPQIDENINIKKFQINTEEFKKAVKNVAFAASNGANLIY-KCINFKSSGN--KLNLAA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLA + QI + V K V E+ + + +V + + + + + Sbjct: 173 TDTFRLAYYTIK-TNQILEDFDFSVNAKDVKEL--LPTDVPKTVTMFYNSIKFGVEYDDT 229 Query: 236 SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 +++ R+ D + N + + ++ + + ++++ I SS + ++L +S Sbjct: 230 TITARITDLPYHNVEQLFNKAISETKHKITIEKSEFNNLLNKIWINSSADKQNRIELKIS 289 Query: 292 SDKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISS------DEVVDD 344 + ++ + ++G + + P N+ YL + I DE + + Sbjct: 290 NQEINVYTKIDELGDSNVRTAKFTLEGSPFVFDMNFNYLKDAISITEGETYILIDEKIQN 349 Query: 345 EVVFRLDSSNSSVFIRG 361 V+F D+ NS I Sbjct: 350 IVLFSKDNPNSKQIITP 366 >gi|315928459|gb|EFV07771.1| DNA polymerase III beta subunit, central domain protein [Campylobacter jejuni subsp. jejuni DFVF1099] Length = 247 Score = 134 bits (338), Expect = 2e-29, Method: Composition-based stats. Identities = 55/273 (20%), Positives = 122/273 (44%), Gaps = 29/273 (10%) Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 F +FP+ E F++ SS L +++ ++ T +Y LNG F I + K+ Sbjct: 1 MFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KI 58 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 V TD RLA+ + + S +P+KA+ E+ ++ +++ ++ + Sbjct: 59 NFVGTDTKRLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAK 113 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 E+ +LI+ +FP+Y+ VIP + +EL + + ++ ++S+++ +KL + Sbjct: 114 NENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFN 169 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 DK+ + D +A + + ++ KYLL+ + +I +++ + Sbjct: 170 KDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSV 224 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + NS+ ++ + ++MPM Sbjct: 225 NEPNSAFIVKSQGLS------------MIIMPM 245 Score = 44.8 bits (105), Expect = 0.020, Method: Composition-based stats. Identities = 23/239 (9%), Positives = 81/239 (33%), Gaps = 17/239 (7%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 + ++ SD+ L I+ N L + + + + + Sbjct: 18 QFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTDKINFVGTDTKRLAIYTLEKAN 77 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--YLQSFPESEFP 119 + S ++ + ++ + + +I + + + + F L + ++ Sbjct: 78 NQEFSFSIPKKAIMEMQKLFYEKIEIFY-----DQNMLIAKNENFEFFTKLINDKFPDYE 132 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 + + ++ + +++ + H N++ + ++ D + Sbjct: 133 KVIPKTFKQELSFSTEDFIDSLKKISVVTEK---------MKLHFNKDKIIFEGISLD-N 182 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 A E++I +++ ++ + K + + L + + ++ V+ S + + LSM Sbjct: 183 MEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNEPNSAFIVKSQGLSMI 241 >gi|6007546|gb|AAF00953.1|AF183408_1 DNA polymerase III beta subunit [Microcystis aeruginosa PCC 7806] Length = 139 Score = 133 bits (336), Expect = 3e-29, Method: Composition-based stats. Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 16/151 (10%) Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDK 294 ++ R ++G +P Y +IP S D+ L ++ L + ++ V+++S + VK SL +D+ Sbjct: 1 VTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDR 60 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + V++PD+G A ESM DI FN KYL++ + + +++ + +L++S Sbjct: 61 LSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQLNAST 115 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 V + Y++MP++I Sbjct: 116 QPVIFTP---------LGGLKMTYLVMPVQI 137 >gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit [Mycoplasma pneumoniae M129] gi|2494195|sp|Q50313|DPO3B_MYCPN RecName: Full=DNA polymerase III subunit beta gi|11379480|gb|AAG34739.1|AE000016_1 DNA polymerase III beta subunit [Mycoplasma pneumoniae M129] gi|1209517|gb|AAC43645.1| DnaN [Mycoplasma pneumoniae] Length = 380 Score = 133 bits (336), Expect = 4e-29, Method: Composition-based stats. Identities = 57/384 (14%), Positives = 153/384 (39%), Gaps = 31/384 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MK+ + ++++ ++L +I N + P ++L++A + + A+ + Sbjct: 1 MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60 Query: 60 SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++D G + V + +++ +++ K+ + + +N L + + E Sbjct: 61 NIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQT----LLVKTKKTNINLNTIDKKE 116 Query: 118 FPSTKEEEYVYSFELASSVLKNLV-----ERTHFAMAT-EEIRYYLNGIFFHINEEDLKL 171 FP + + V E +++ + ++ A++T E NG+ F+ ++ Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFN-GSNGKQI 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227 A+D ++L+V E+ Q + IV + I + + + Sbjct: 176 FLEASDSYKLSVYEIK---QKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDL 232 Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283 + + +++ ++ I+ FP + + ++ + L+ A+ R+ ++ + R Sbjct: 233 STELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERF 292 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + +++ L + + ++G ++E + + ++I N LLE ID+ + Sbjct: 293 FLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDT---- 348 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDS 366 DE+ SN I ++ Sbjct: 349 -DEIELYFQGSNKYFLISSNNEPE 371 >gi|293363919|ref|ZP_06610655.1| DNA polymerase III, beta subunit [Mycoplasma alligatoris A21JP2] gi|292552409|gb|EFF41183.1| DNA polymerase III, beta subunit [Mycoplasma alligatoris A21JP2] Length = 367 Score = 133 bits (335), Expect = 5e-29, Method: Composition-based stats. Identities = 60/366 (16%), Positives = 145/366 (39%), Gaps = 22/366 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKIT+++ + ++ I +T ++ L+ L S + I Sbjct: 1 MKITIKKEILENVVDFLGTYINSTDTFLAFRYIHLEVTHEKLVFTVSSSTMSARKTINVD 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G + ++ +L +I+R L D ++ + +NI+ G + + L + + Sbjct: 61 EVNVRVEEEGKVLLNNKVLKNIIRNLSDDITLA-----KKSNIINITEGKTKYNLNTISD 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAV 174 + FP E F++ + ++ FA+A + L I N +++ C Sbjct: 116 N-FPIIDFNESENRFQMKKNDFDEAIKNVGFAVADSKSNSSILKAINMFANSNEIRFC-- 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD RL+ V I ++ I V + + ++ I + ++ + + ++ + E Sbjct: 173 GTDSFRLSTFTVKISKEM--NFDISVDARNLKSMM-IKDNTIKNIYIFFNMNKFGVATED 229 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+D + + + + P + + + + L +++ ++L + Sbjct: 230 TIIQSSLVDIPYHDIKRIFPTEITRNIVIQKSVLLDLINKTIFDFDKDGSKIELKFTKKL 289 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVD----DEVVFR 349 L + + ++G + S + N P+++ FN ++L E I + + + + +V Sbjct: 290 LTASYEETEVGHSQASTEDFTLNGNPIELTFNSRFLKEAISVLDDELNIGVNLMENIVLL 349 Query: 350 LDSSNS 355 L N Sbjct: 350 LSKKNP 355 >gi|8037924|gb|AAF71536.1|AF255728_2 DNA polymerase III beta subunit [Streptococcus pyogenes] Length = 189 Score = 133 bits (334), Expect = 6e-29, Method: Composition-based stats. Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 11/190 (5%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60 + ++ R+ + L R I KN IP+ + ++ + + S +I I IP S Sbjct: 3 QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62 Query: 61 ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 + G+I + A +I+ L D IS + +V ++ G S L+ Sbjct: 63 ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 ++P +E L + +LK+++ T FA + +E R L G+ ++ AV Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178 Query: 175 ATDGHRLAVA 184 ATD HR++ Sbjct: 179 ATDSHRMSQR 188 >gi|119394196|gb|ABL74460.1| DNA polymerase III beta subunit [Buchnera aphidicola] Length = 195 Score = 131 bits (330), Expect = 2e-28, Method: Composition-based stats. Identities = 57/204 (27%), Positives = 115/204 (56%), Gaps = 9/204 (4%) Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213 RYYLNG+ + L AVATDG+R+ + + I + S+I+PRK + + ++L+ Sbjct: 1 RYYLNGMLLKKVKTL--LYAVATDGYRMGITKTSIQEDVI-PFSVIIPRKGIVGLYKLLN 57 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 K ++ + ++ I + IE L +++LI+G +P+Y +++ + + +N L+Q++ Sbjct: 58 IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYISILLKHKNCPIILNSQQLKQSLL 117 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 RV+I++S +++ + ++K + DN + G A +S + Y ++I N Y+L+I+ Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEEEG-AEDSFKINYFNNEVEISINVYYILDIL 176 Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357 + ISS + L+ SN+S+ Sbjct: 177 NVISSK-----NIFLFLNESNNSI 195 >gi|89512206|gb|ABD73999.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. paratuberculosis] Length = 143 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 5/142 (3%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K + R + + + + + +PV VLL D L I E+ + A + Sbjct: 7 KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 66 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS+ VS LL DIVR L + + G V ++ G + F L + ++P+ Sbjct: 67 ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 122 Query: 122 KEEEYVYSFELASSVLKNLVER 143 + L + + + + Sbjct: 123 PTLPEE-TGTLPADLFAEAIGQ 143 Score = 39.4 bits (91), Expect = 0.95, Method: Composition-based stats. Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 11/144 (7%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F L + V ++ + L+G+ +E L + D A A+V Sbjct: 8 FRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGF--DYEVSAEAQV--A 63 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPN 248 A+IA S++V + + +I+R L +K + + +R+ LN S S+ + ++P Sbjct: 64 AEIASPGSVLVSGRLLSDIVRALPNK--PIDFYVDGNRVALNCGSARFSLPTMAVEDYPT 121 Query: 249 YQNVIPCSNDKELRVNCTNLRQAV 272 +P ++ + +A+ Sbjct: 122 ----LPTLPEETGTLPADLFAEAI 141 >gi|148377270|ref|YP_001256146.1| DNA polymerase III, beta chain [Mycoplasma agalactiae PG2] gi|148291316|emb|CAL58699.1| DNA polymerase III, beta chain [Mycoplasma agalactiae PG2] Length = 369 Score = 131 bits (329), Expect = 2e-28, Method: Composition-based stats. Identities = 70/377 (18%), Positives = 146/377 (38%), Gaps = 27/377 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V + + +++ R + +++ + + AN ++ +A+ I I Sbjct: 1 MKIIVNKIFLDDIIEVVSRFSDPISSLYGMRCIKITANHNFVKFEATNEITNIVRKIKVD 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G + V A+ +I++KL +I ++ I DS + L Sbjct: 61 DNKIIVEEDGELLVQANYFKNIIKKLNGFIEIK-----TYFNKMEIKQQDSVYTLTLNEI 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 S FP E + F++ + K V+ FA + Y I F + KL A Sbjct: 116 SSFPQIDENINIKKFQINTEEFKKAVKNVAFAASNGANLIY-KCINFKSSGN--KLNLAA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLA + QI + V K V E+ + + +V + + + + Sbjct: 173 TDTFRLAYYTIK-TNQILEDFDFSVNAKDVKEL--LPTDAPKTVTMFYNSIKFGVEYNDT 229 Query: 236 SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291 +++ R+ D + N + + ++ + + ++++ I SS + ++L +S Sbjct: 230 TITARITDLPYHNVEQLFNKAISETKHKITIEKSEFNNLLNKIWINSSADKQNRIELKIS 289 Query: 292 SDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISS------DEVVDD 344 + ++ + ++G + ++ N+ YL + I DE + + Sbjct: 290 NQEINVYTKIDELGDSNVKTTKFTLEGSSFVFDMNFNYLKDAISITEGETYILIDEKIQN 349 Query: 345 EVVFRLDSSNSSVFIRG 361 V+F D+ NS I Sbjct: 350 IVLFSKDNPNSKQIITP 366 >gi|168178719|ref|ZP_02613383.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916] gi|182671283|gb|EDT83257.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916] Length = 329 Score = 129 bits (326), Expect = 5e-28, Method: Composition-based stats. Identities = 56/308 (18%), Positives = 124/308 (40%), Gaps = 46/308 (14%) Query: 77 IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136 +++ L A++ ++ I G+ + S+ + + Sbjct: 66 VLKLLPKDAKVIITED-------TIISGNRKIK---YIPSQLVDMPINIENHLITIPIDE 115 Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196 LK+L+ +AMA +EIR LNG+ + +E +A DG+RLA+ + + + Sbjct: 116 LKHLLS-CSYAMAKDEIRLILNGLCINNSE------FIALDGYRLALRKGNFQTKEP--- 165 Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 +IVP + I ++ +D VK+ +++ + L + G++ NY+++IP Sbjct: 166 -VIVPADLIKVIKKVKYERD--VKIYYNDNYVKFKFGDLEVIGNRQIGDYINYKSIIPED 222 Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + ++ + ++ + + L +KL + +N ++ ES+ + Sbjct: 223 YNTKVTLETKSILDILK---DYKKNKFNIADLDFQKNKLIIKANN-EVATVEESITIELQ 278 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 P++I FN YL++ N D L + + I+ + N Sbjct: 279 GEPLEISFNADYLIDAFKN-------YDNATLELTYCVNPMVIK------------ENNK 319 Query: 377 FYVLMPMR 384 +++P+R Sbjct: 320 LDLVLPVR 327 >gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit [Mycoplasma genitalium G37] gi|255660026|ref|ZP_05405435.1| DNA polymerase III, beta subunit [Mycoplasma genitalium G37] gi|84626162|gb|AAC71217.2| DNA polymerase III, beta subunit [Mycoplasma genitalium G37] gi|166078983|gb|ABY79601.1| DNA polymerase III, beta subunit [synthetic Mycoplasma genitalium JCVI-1.0] Length = 380 Score = 128 bits (321), Expect = 2e-27, Method: Composition-based stats. Identities = 63/387 (16%), Positives = 160/387 (41%), Gaps = 31/387 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 MKI + +S++ ++L +I N I P + L++A + + A+ + + Sbjct: 1 MKILINKSELNKILKKMNNVIISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNK 60 Query: 60 SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++D GS+ V + D++ +++ K+ + + ++ L + +E Sbjct: 61 NIDILEQGSLIVKGKIFNDLINGIKEEIITIQEKDQT----LLVKTKKTSINLNTINVNE 116 Query: 118 FPST-----KEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKL 171 FP + F++ S+L +++ +++ EI NG+ F+ ++ Sbjct: 117 FPRIRFNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFN-GSNGKEI 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227 A+D ++L+V E+ Q + I+ + I +D S+ + Sbjct: 176 FLEASDTYKLSVFEIK---QETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSF 232 Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283 + +++++ +S ++ +FP + ++ V L+ A+ R+ ++ + R Sbjct: 233 STEMLISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERT 292 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 + ++S +L + ++G ++E ++ + ++I FN LL+ I++ S+ Sbjct: 293 FLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESN--- 349 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNN 369 E+ F ++ I K + Sbjct: 350 --EINFDFQGNSKYFLITSKSEPELKQ 374 >gi|213021808|ref|ZP_03336255.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 97 Score = 127 bits (320), Expect = 3e-27, Method: Composition-based stats. Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 1/95 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60 Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94 G+ TV A +DI R L +GA+I+ E + Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGD 95 >gi|294155302|ref|YP_003559686.1| DNA polymerase III, beta subunit [Mycoplasma crocodyli MP145] gi|291599911|gb|ADE19407.1| DNA polymerase III, beta subunit [Mycoplasma crocodyli MP145] Length = 367 Score = 127 bits (319), Expect = 3e-27, Method: Composition-based stats. Identities = 59/346 (17%), Positives = 146/346 (42%), Gaps = 18/346 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----G 55 MK T++++ + +++ I +T ++ L+ + L A+ + Sbjct: 1 MKFTIKKNILEQVVEFLGTYINVADTFLAFRYINLEVTNEKLIFTAASSTMSARKILNVD 60 Query: 56 AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + V+ G ++ ++ +I++ L + IS + G +NIS G++ + L + + Sbjct: 61 EVNIKVEEEGFALLNCKVVKNIIKNLSNNVSIS-----KRGNIINISEGNTKYNLNTISD 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN-GIFFHINEEDLKLCAV 174 +P+ + F++ + + ++ FA+ + ++ I + N +L+ C Sbjct: 116 R-YPTIEFGNVENKFQMNKNDFEEGIKNVAFAVGDPKNNSAISKAINMYANNNELRFC-- 172 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 TD RL+ V I I+ I V + + ++ I + + V + +R + E Sbjct: 173 GTDSFRLSTYTVKISKNIS--FDISVDARNMKNMI-IKDNNVKRINVFYTLNRFGIETED 229 Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + L+D + + + + P + + + L +++ S ++L+ +S+ Sbjct: 230 TIIQSSLVDLAYHDIKRIFPTDITRNIVIQKNVLMDIINKTIFDSDNTGAKIELNFTSNL 289 Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSD 339 L T + ++G + S + P+++ FN K+L E I + + Sbjct: 290 LTATYEEAEVGHSQASTDDFKLIGDPIELTFNSKHLREAIGVVEGE 335 >gi|257437734|ref|ZP_05613489.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] gi|257200041|gb|EEU98325.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii A2-165] Length = 173 Score = 127 bits (319), Expect = 4e-27, Method: Composition-based stats. Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 3/151 (1%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 I +++ + + + + ++TIPV +LL+A L + E+ I I A+V Sbjct: 19 NIICDKTLLSAAIDGVSKAVTLRSTIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIDANV 78 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 G + ++A LL +V ++ G EN + I G + F +QS ++FP Sbjct: 79 KEPGEVVLNAKLLSSMVSRMPSGQINIQSAEN---GKTTIQSGVAQFEIQSMNPTDFPEL 135 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEE 152 + + + VL++++ERT +A++ +E Sbjct: 136 PNTGAEETLNIKTGVLRDMIERTLYAVSQDE 166 >gi|270684738|ref|ZP_06222840.1| DNA polymerase III, beta subunit domain protein [Haemophilus influenzae HK1212] gi|270316195|gb|EFA28165.1| DNA polymerase III, beta subunit domain protein [Haemophilus influenzae HK1212] Length = 136 Score = 126 bits (318), Expect = 4e-27, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPASVD 62 ++ R ++L+ L C ++ + IPV +VLLQ D L I + E+E + +S Sbjct: 1 SISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLSSSS 60 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G+ T+ A DI R L D ++I+ E + + G S F L + P E+P+ Sbjct: 61 ENGTFTIPAKKFLDICRTLSDESEITVIFEQD---RALVQSGRSRFTLATQPAEEYPNLT 117 Query: 123 EEEYVYSFELASSVLKNLV 141 + + FEL + L+ L+ Sbjct: 118 DWQSEVDFELPQNTLRRLI 136 Score = 39.1 bits (90), Expect = 1.2, Method: Composition-based stats. Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 5/109 (4%) Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200 +++ ++ LN + I ED +L TD + ++ ++ ++ + + Sbjct: 11 LQQVCGVLSNRPNIPVLNNVLLQI--EDNRLTITGTD-LEVELSSQTQLSSSSENGTFTI 67 Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDGEFPN 248 P K +I R LS +S + V + R + + E+PN Sbjct: 68 PAKKFLDICRTLSD-ESEITVIFEQDRALVQSGRSRFTLATQPAEEYPN 115 >gi|313678136|ref|YP_004055876.1| DNA polymerase III subunit beta [Mycoplasma bovis PG45] gi|312950639|gb|ADR25234.1| DNA polymerase III, beta subunit [Mycoplasma bovis PG45] Length = 369 Score = 125 bits (315), Expect = 1e-26, Method: Composition-based stats. Identities = 72/377 (19%), Positives = 146/377 (38%), Gaps = 27/377 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI V ++ + +++ R + +++ + + AN ++ +AS I I Sbjct: 1 MKIIVNKNFLDDIIEIVSRFSDPISSLYGMRCIKITANKNFVKFEASNEITNIIKKINVD 60 Query: 61 -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V+ G + V A+ I++KL +I ++ I DS + L Sbjct: 61 DSKIIVEEDGELLVQANYFKSIIKKLNGFIEIK-----TYFNKMEIRQQDSVYTLTLNEL 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 FP E + F + + K V+ FA + Y I F + KL A Sbjct: 116 ISFPQIDENINIKKFNINTEEFKKAVKNVAFAASNGANLIY-KCINFKSSGN--KLSLAA 172 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD RLA + QI V K V E+ + + V + + + + ++ Sbjct: 173 TDTFRLAYYSIK-TDQILDDFDFSVNAKDVKEL--LPADAPKIVTMFYNSIKFGVEYDNT 229 Query: 236 SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSI-MSSVRIQAVKLSLS 291 ++ R+ D + N + + + ++ + + ++++ I SS + ++L +S Sbjct: 230 IITARITDLPYHNVEQLFNKAISNTKHKITIEKSEFNNLLNKIWINSSSDKQNRIELKIS 289 Query: 292 SDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISS------DEVVDD 344 + ++ + ++G + ++ + P N+ YL E I DE V + Sbjct: 290 NSEINIYTKLDELGDSNVKTTKFVLDGSPFVFDMNFNYLKEAIAITEGETYILIDEKVQN 349 Query: 345 EVVFRLDSSNSSVFIRG 361 V+F ++ NS I Sbjct: 350 IVLFSKENPNSKQIITP 366 >gi|332829044|gb|EGK01708.1| hypothetical protein HMPREF9455_01856 [Dysgonomonas gadei ATCC BAA-286] Length = 180 Score = 124 bits (313), Expect = 2e-26, Method: Composition-based stats. Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 12/184 (6%) Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262 K + + D + + ++ + + S S+ L++G +PNY++VIP +NDK L Sbjct: 6 KIATILKGSIKPSDELINIFINGNSVRFEYGSESIVATLLEGNYPNYRSVIPQNNDKVLS 65 Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMD 321 + + L A+ RVS+ ++ VKL LS+D + ++ + D A E++ Y+ + Sbjct: 66 IGKSELNGAIKRVSVFANQSSSLVKLELSNDIIKLSAQDIDFSTAADETVACEYSNKQIA 125 Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381 I F L E+I I + + + + I D S + Y+LM Sbjct: 126 IGFKGHLLTELISAIPT-----PNMQMSFSDPSRATLITPVDDKSGDQL------TYLLM 174 Query: 382 PMRI 385 PM + Sbjct: 175 PMML 178 >gi|71893361|ref|YP_278807.1| DNA polymerase III subunit beta [Mycoplasma hyopneumoniae J] gi|71851488|gb|AAZ44096.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae J] Length = 378 Score = 124 bits (312), Expect = 2e-26, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 140/357 (39%), Gaps = 32/357 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+E+ I + I P L+ L I ++ E+ I Sbjct: 1 MKFTIEKKIIEWQIERMQSAILNNINSP-LSSFFLKLTRSGLFIISTNSELSYKVFINKK 59 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + GS + L D++RK Q+SF +G+E+ + D+ F + S Sbjct: 60 DLIEIHDVGSCLIDGVFLRDVIRK--SDKQLSFHL---IGSELKVFWEDALFSKTTRDSS 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E+ + + K ++ T FA + L+ I E L AT Sbjct: 115 FFPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D R A +++I + +I V K + + I D +++++ S+I ++L+ Sbjct: 173 DTSRFASEKIEISNKS--RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLT 228 Query: 237 MSVRLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + R+ E+ + N++P ++ L +N ++ +D+ +I++ + + LSLS + Sbjct: 229 IQSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNA 288 Query: 295 LCMTVDNPDMGKAIESM--------------NVYYNECPMDICFNYKYLLEIIDNIS 337 L + D G++ + ++ + NY+YL + I Sbjct: 289 LKGYISQYDSGQSNVQTKNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 345 >gi|54019971|ref|YP_115517.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 232] gi|53987144|gb|AAV27345.1| DNA polymerase III, beta chain [Mycoplasma hyopneumoniae 232] Length = 378 Score = 123 bits (309), Expect = 5e-26, Method: Composition-based stats. Identities = 70/357 (19%), Positives = 140/357 (39%), Gaps = 32/357 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+E+ I + I P L+ L I ++ E+ I Sbjct: 1 MKFTIEKKIIEWQIERMQSAILNNVNSP-LSSFFLKLTRSGLFIISTNSELSYKVFINKK 59 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + GS + L D++RK Q+SF +G+E+ + D+ F + S Sbjct: 60 DLIEIYDVGSCLIDGVFLRDVIRK--SDKQLSFHL---IGSELKVFWEDAIFSKTTRDSS 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E+ + + K ++ T FA + L+ I E L AT Sbjct: 115 FFPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D R A +++I + +I V K + + I D +++++ S+I ++L+ Sbjct: 173 DTTRFASEKIEISNKS--RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLT 228 Query: 237 MSVRLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + R+ E+ + N++P ++ L +N ++ +D+ +I++ + + LS+S + Sbjct: 229 IQSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSMSKNA 288 Query: 295 LCMTVDNPDMGKAIESM--------------NVYYNECPMDICFNYKYLLEIIDNIS 337 L + D G++ + ++ + NY+YL + I Sbjct: 289 LKGYISQYDSGQSNVQTKNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 345 >gi|72080344|ref|YP_287402.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448] gi|71913468|gb|AAZ53379.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448] Length = 378 Score = 123 bits (308), Expect = 6e-26, Method: Composition-based stats. Identities = 71/357 (19%), Positives = 140/357 (39%), Gaps = 32/357 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK T+E+ I + I P L+ L I ++ E+ I Sbjct: 1 MKFTIEKKIIEWQIERMQSAILNNINSP-LSSFFLKLTRSGLFIISTNSELSYKVFINKK 59 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 + GS + L D++RK Q+SF +G+E+ + D+ F + S Sbjct: 60 DLIEIYDVGSCLIDGVFLRDVIRK--SDKQLSFHL---IGSELKVFWEDALFSKTTRDSS 114 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 FP E+ + + K ++ T FA + L+ I E L AT Sbjct: 115 FFPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSAT 172 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D R A +++I + +I V K + + I D +++++ S+I ++L+ Sbjct: 173 DTSRFASEKIEISNKS--RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLT 228 Query: 237 MSVRLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + R+ E+ + N++P ++ L +N ++ +D+ +I++ + + LSLS + Sbjct: 229 IQSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNA 288 Query: 295 LCMTVDNPDMGKAIESM--------------NVYYNECPMDICFNYKYLLEIIDNIS 337 L + D G++ + ++ + NY+YL + I Sbjct: 289 LKGYISQYDSGQSNVQTKNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 345 >gi|255028896|ref|ZP_05300847.1| DNA polymerase III subunit beta [Listeria monocytogenes LO28] Length = 146 Score = 121 bits (305), Expect = 2e-25, Method: Composition-based stats. Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 11/147 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 59 ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112 V+ G I + + DIVR+L + E + NIS G ++F L Sbjct: 61 ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117 Query: 113 FPESEFPSTKEEEYVYSFELASSVLKN 139 E+P E + ++ +VLKN Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKN 144 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 25/145 (17%), Positives = 61/145 (42%), Gaps = 7/145 (4%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV--- 186 F + L V A++ L GI +N+E + L +D A + Sbjct: 3 FVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIEN 62 Query: 187 -DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 +++ ++ I++ K G+I+R L ++ ++V+ S + +++ S ++ +D Sbjct: 63 DEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVT-SNYQTNISSGQASFTLNGLD-- 119 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQ 270 Y + ++ K +++ L+ Sbjct: 120 PMEYPKLPEVTDGKTIKIPINVLKN 144 >gi|46204942|ref|ZP_00049263.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Magnetospirillum magnetotacticum MS-1] Length = 113 Score = 121 bits (304), Expect = 2e-25, Method: Composition-based stats. Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M +TV+R +L L RI+ER+NTIP+ +V L L ++ + +IE A+ Sbjct: 1 MLLTVQREALLRPLAVTHRIVERRNTIPILSNVRLGTEGTTLTVRGTDLDIEAASTCEAT 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 +D G++TV A L DIV KL GA+I+ ++ G ++ +S G + F L + P Sbjct: 61 IDEPGALTVPAQTLRDIVHKLPQGAEITLRQDAGSG-QLALSAGRARFKLPTLP 113 >gi|319440486|ref|ZP_07989642.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM 44702] Length = 136 Score = 121 bits (303), Expect = 2e-25, Method: Composition-based stats. Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 TV + D L R + K + P+ VL++A + L++ E+ + A V Sbjct: 14 FTVAKDDFSSALAWVARSLPSKASQPILRGVLIEATEDGLQLSGFDREVSTKVRVSADVA 73 Query: 63 VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 G I V+ L +I+ L D + + GT+V ++ G S+F L + ++P Sbjct: 74 EPGRILVAGRLASNIIGALPDKP----VRIDYDGTKVLVNCGSSHFELPAMTIDDYPVLP 129 Query: 123 EEEYVY 128 E Sbjct: 130 EFPATA 135 Score = 37.1 bits (85), Expect = 4.3, Method: Composition-based stats. Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 6/113 (5%) Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184 + SF +A + + ++ ++ + L G+ E+ L+L R Sbjct: 9 QQSVSFTVAKDDFSSALAWVARSLPSKASQPILRGVLIEATEDGLQLSGFD----REVST 64 Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237 +V + A +A+ I+V + I+ L D V++ +++ +N S Sbjct: 65 KVRVSADVAEPGRILVAGRLASNIIGALP--DKPVRIDYDGTKVLVNCGSSHF 115 >gi|88658239|ref|YP_507796.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis str. Arkansas] gi|88599696|gb|ABD45165.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis str. Arkansas] Length = 182 Score = 120 bits (302), Expect = 3e-25, Method: Composition-based stats. Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 6/179 (3%) Query: 70 SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129 SA LLYDIV+KL + +I FF + + I G + F+L +FP + E Sbjct: 2 SAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENNELQNK 59 Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 F L S L +L +T FA++ EE R+ LNG++ H + LC ATDGHRL++ ++ Sbjct: 60 FTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLTKLSQS 117 Query: 190 AQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 + IIVP+K V EIL+I+S S + + +SLS+ +I + + ++ID F Sbjct: 118 QNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTF 176 >gi|92112114|gb|ABE73748.1| DNA polymerase subunit B [Azoarcus communis] Length = 125 Score = 119 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 14/139 (10%) Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P+YQ VIP ++ + + L A+ R +I+++ + + V++ L L + N + + Sbjct: 1 PDYQRVIPQNHPGLVALPRQALLSALQRAAILTNEKFRGVRMVLDDGALRIVSSNSEQEE 60 Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 A E + + Y+ +DI FN YLL++++N+SS + + +R + NSS I + Sbjct: 61 AQEELEIDYHGAKLDIGFNVTYLLDVLNNLSS-----ETIEWRFNDGNSSALITLPGNE- 114 Query: 367 KNNKDNKVNAFYVLMPMRI 385 + YV+MPMRI Sbjct: 115 --------HFKYVVMPMRI 125 >gi|255019006|ref|ZP_05291132.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL F2-515] Length = 143 Score = 119 bits (300), Expect = 5e-25, Method: Composition-based stats. Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 14/151 (9%) Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDK 294 RL++G +P+ +IP EL +N QA+DR S+++ V ++L + + Sbjct: 2 FYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQ 61 Query: 295 LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 + ++ ++P++G E++ + + I FN KY+++ + D++ + Sbjct: 62 VEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQISFSGT 116 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +R KD + N ++ P+R Sbjct: 117 MRPFVLRPKDAANPNEI------LQLITPVR 141 >gi|33322985|gb|AAQ07229.1|AF496537_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. lactis] Length = 153 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 9/156 (5%) Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 + E+ +I+ D +KV L +S+I E+LS RL++G +P+ ++P + ++ Sbjct: 1 LQELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRLLEGAYPDVDRLLPTESTTSVQFA 60 Query: 265 CTNLRQAVDRVSIMS-SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESM-NVYYNECPM 320 ++L Q + R S+++ + R AV+++L+ + ++ ++P++GK E + + Sbjct: 61 VSDLMQTLSRASLLTHANRTNAVQMTLNVADQTVLVSGNSPEVGKIEEEVGFSSLTGRDL 120 Query: 321 DICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 I FN Y+ + V D V+ S Sbjct: 121 TISFNPDYMAAALRA-----SVTDSVIINFTESLRP 151 >gi|207093110|ref|ZP_03240897.1| DNA polymerase III subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 227 Score = 119 bits (299), Expect = 7e-25, Method: Composition-based stats. Identities = 44/235 (18%), Positives = 104/235 (44%), Gaps = 20/235 (8%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS 214 L GI +++ L V TD RL+ +++ ++ + S I+P++A+ EIL++ Sbjct: 7 LAGILMQFDQKHQTLSVVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY- 65 Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 + + E+ + +LIDG +P+YQ ++P + ++++ Sbjct: 66 --ENFSFKSDGMLAVVENETHTFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKL 123 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLL 330 S +SS +KL+L + + + A S+ + E + N K+ L Sbjct: 124 CSSLSST----IKLTLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFL 179 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 E ++ + + + V + + +S I+ + +++ + K++ ++MP+ + Sbjct: 180 EALNALGTT-----QFVLKCNEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 227 >gi|225550400|ref|ZP_03771349.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] gi|225379554|gb|EEH01916.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2 str. ATCC 27814] Length = 379 Score = 119 bits (299), Expect = 8e-25, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 141/352 (40%), Gaps = 13/352 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKISTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G I V+A +L ++ KL+D + + + + I + + + F Sbjct: 61 FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117 Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174 PS E L +++ + + + E ++G+ D +L A+ Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233 TD + + + + K K + E+LR + ++ + ++ + + Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 + R+IDG +PN ++ +N +K + L + ++R ++I+ + + + + Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ +++ ++G E M + + ++ N L ++ N +++V Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDVT 349 >gi|167972399|ref|ZP_02554676.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] gi|184209326|gb|EDU06369.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5 str. ATCC 27817] Length = 379 Score = 119 bits (298), Expect = 1e-24, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 141/352 (40%), Gaps = 13/352 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G I V+A +L ++ KL+D + + + + I + + + F Sbjct: 61 FEHFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117 Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174 PS E L +++ + + + E ++G+ D +L A+ Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233 TD + + + + K K + E+LR + ++ + ++ + + Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 + R+IDG +PN ++ +N +K + L + ++R ++I+ + + + + Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ +++ ++G E M + + ++ N L ++ N +++V Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDVT 349 >gi|167974938|ref|ZP_02557215.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|167975179|ref|ZP_02557456.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|167989088|ref|ZP_02570759.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|168362255|ref|ZP_02695434.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|195867361|ref|ZP_03079365.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198273299|ref|ZP_03205835.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225551555|ref|ZP_03772501.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] gi|171903556|gb|EDT49845.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13 str. ATCC 33698] gi|188018688|gb|EDU56728.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7 str. ATCC 27819] gi|188997710|gb|EDU66807.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11 str. ATCC 33695] gi|195660141|gb|EDX53521.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12 str. ATCC 33696] gi|195660837|gb|EDX54090.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9 str. ATCC 33175] gi|198249819|gb|EDY74599.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4 str. ATCC 27816] gi|225379370|gb|EEH01735.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8 str. ATCC 27618] Length = 379 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 54/352 (15%), Positives = 141/352 (40%), Gaps = 13/352 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G I V+A +L ++ KL+D + + + + I + + + F Sbjct: 61 FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117 Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174 PS E L +++ + + + E ++G+ D +L A+ Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233 TD + + + + K K + E+LR + ++ + ++ + + Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 + R+IDG +PN ++ +N +K + L + ++R ++I+ + + + + Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342 +++ +++ ++G E M + + ++ N L ++ N +++V Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDVT 349 >gi|209554064|ref|YP_002284498.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] gi|209541565|gb|ACI59794.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10 str. ATCC 33699] Length = 379 Score = 118 bits (297), Expect = 1e-24, Method: Composition-based stats. Identities = 54/351 (15%), Positives = 141/351 (40%), Gaps = 13/351 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ V ++E + + I N + VL++ N+ + K + ++ I Sbjct: 1 MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G I V+A +L ++ KL+D + + + + I + + + F Sbjct: 61 FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117 Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174 PS E L +++ + + + E ++G+ D +L A+ Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233 TD + + + + K K + E+LR + ++ + ++ + + Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 + R+IDG +PN ++ +N +K + L + ++R ++I+ + + + + Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297 Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341 +++ +++ ++G E M + + ++ N L ++ N +++V Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDV 348 >gi|222874687|gb|EEF11818.1| predicted protein [Populus trichocarpa] Length = 296 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 5/143 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + +L +L I+ER++T+P+ +VL++ L++ S EI+I D Sbjct: 157 LKATQDKVLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 216 Query: 63 V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 + TV A L DI++ + +S + ++ + G S F LQ+ P +FP Sbjct: 217 TGDFTTTVGARKLIDILKTMPGDQTVSLETQ---QAKMVLKGGKSRFTLQTLPAEDFPLV 273 Query: 122 KE-EEYVYSFELASSVLKNLVER 143 +E + SF + VLK+L+ + Sbjct: 274 QEAAAFGPSFSVPQKVLKDLLGQ 296 >gi|302561988|ref|ZP_07314330.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000] gi|302479606|gb|EFL42699.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000] Length = 365 Score = 118 bits (296), Expect = 2e-24, Method: Composition-based stats. Identities = 60/269 (22%), Positives = 104/269 (38%), Gaps = 35/269 (13%) Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 EE L+ S L ++ FA T+ L GI F + ED LC VATD +R+A Sbjct: 124 SEETAVRLSLSGSALAAALDAVRFAAGTDPGLPMLGGILFDV--EDGALCLVATDRYRMA 181 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 VA+ + VP + + +R L D V++S+ R+ L + + + Sbjct: 182 VAQAAAEGPAGSRVRVTVP-LPLADAMRALLEGDDPVRLSVDGDRVTLETGDRQTAGQCL 240 Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVD----RVSIMSSVRIQAVKLSLSSDKLCMT 298 +FP+Y+ ++ + V+ R+AV R + L++ L + Sbjct: 241 GHDFPDYRRLVRLPAGRRAPVDVPAFREAVRTGPVRTGEVREQDGAPCDLTV----LEVA 296 Query: 299 VDNP--DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356 D G E + + N +LLE + + D +V + + Sbjct: 297 ADGSVAPAGDGAE-------GRDL-VAVNRDFLLEALPAGAG-----DRLVLEIGDPTAP 343 Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + IR D + F +LMP+R+ Sbjct: 344 LAIRRPDD---------ADTFSILMPVRL 363 Score = 47.2 bits (111), Expect = 0.004, Method: Composition-based stats. Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 8/122 (6%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++++ S + L +P+ +L DG L + A+ A Sbjct: 130 RLSLSGSALAAALDAVRFAAGTDPGLPMLGGILFDVEDGALCLVATDRYRMAVAQAAAEG 189 Query: 62 DVCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 GS +TV L D +R L +G + G V + GD Q +F Sbjct: 190 -PAGSRVRVTVPLP-LADAMRALLEGDDPVRLSVD--GDRVTLETGDRQTAGQCL-GHDF 244 Query: 119 PS 120 P Sbjct: 245 PD 246 >gi|289432029|ref|YP_003461902.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT] gi|289432171|ref|YP_003462044.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT] gi|288945749|gb|ADC73446.1| DNA polymerase III beta chain [Dehalococcoides sp. GT] gi|288945891|gb|ADC73588.1| DNA polymerase III beta chain [Dehalococcoides sp. GT] Length = 419 Score = 117 bits (293), Expect = 3e-24, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 35/268 (13%) Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + L + R A E+ R L + F + D KL V+ DG+RLA Sbjct: 107 SPSNTVKPNLGALELSEALSRVVPFTAKEDNRPVLQCVLFKVA--DGKLTMVSADGYRLA 164 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 + ++D +++ R + ++ L V+V +S L+ SL + LI Sbjct: 165 MVKLDFDG---DEGQVLINRDELRGVISALRRA-YRVRVGFEKSGESLDGMSLVLDTELI 220 Query: 243 -------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 DG FP Y+ +IP + + + +AV + ++S + + L++ + KL Sbjct: 221 RYKWRGADGNFPEYEKLIPADFNTFVSFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKL 280 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 M+ + D G+A + I + YL + + V +L S S Sbjct: 281 TMSSPD-DKGQA--EIPADTQGEG-KIRLDGSYLADALRACGG------MVELKLVDSKS 330 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + D + V+MPM Sbjct: 331 PMLFTSPDYEL------------VVMPM 346 Score = 41.4 bits (96), Expect = 0.24, Method: Composition-based stats. Identities = 29/237 (12%), Positives = 73/237 (30%), Gaps = 19/237 (8%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 ++ E L +++ PV VL + DG L + ++ + D G + Sbjct: 120 ELSEALSRVVPFTAKEDNRPVLQCVLFKVADGKLTMVSADGYRLAMVKLDFDGDE-GQVL 178 Query: 69 VSAHLLYDIVRKLQD------GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 ++ L ++ L+ G + S + + ++ + E+ Sbjct: 179 INRDELRGVISALRRAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLI 238 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 ++ ++ V + ++ + + + KL + D Sbjct: 239 PADFNTFVSFDTNEAIRAVS-SLKVLSDSKAYPI------DLTIGNGKLTMSSPD----D 287 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 + +I A I + + + LR +K+ S+S + + V Sbjct: 288 KGQAEIPADTQGEGKIRLDGSYLADALRACGGM-VELKLVDSKSPMLFTSPDYELVV 343 >gi|332829045|gb|EGK01709.1| hypothetical protein HMPREF9455_01857 [Dysgonomonas gadei ATCC BAA-286] Length = 212 Score = 117 bits (293), Expect = 4e-24, Method: Composition-based stats. Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 7/211 (3%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-V 61 I++ +S++L L +II KNT+ + ++LL DG ++ A+ + I +I Sbjct: 4 ISISKSELLNRLQSVSKIISPKNTLLIMDNILLNIQDGTVKFSATDTQGRINTSIDGILT 63 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 D S+ + LL + ++ L + + T I + F L FP Sbjct: 64 DNNISVCIEPKLLIEALKTLPEQPLAISIDDKFSTT---IKYKGGKFELVGISPEGFPKE 120 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 K+ S + S VL N +E+T +T+++R + ++ I EE + VA+DGH+L Sbjct: 121 KDITNAKSISIPSKVLLNGIEKTILCASTDDLRPIMTSVYLSIAEEQINF--VASDGHKL 178 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212 A+ E+ + + S +P K R Sbjct: 179 ALLEIR-DESMTEKISFALPLKNRNHSKRFH 208 Score = 38.3 bits (88), Expect = 2.3, Method: Composition-based stats. Identities = 11/84 (13%), Positives = 33/84 (39%), Gaps = 6/84 (7%) Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSDKLCMTVDNPDMGKAIESMNV 313 + ++ + L + VS + S + + L++ + + + G+ S++ Sbjct: 2 TTISISKSELLNRLQSVSKIISPKNTLLIMDNILLNIQDGTVKFSATDT-QGRINTSIDG 60 Query: 314 YYNECPMDICFNYKYLLEIIDNIS 337 + + +C K L+E + + Sbjct: 61 ILTDNNISVCIEPKLLIEALKTLP 84 >gi|325123494|gb|ADY83017.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2] Length = 138 Score = 116 bits (290), Expect = 7e-24, Method: Composition-based stats. Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---I 57 M++ + + +L +L H +ER++T+ + +V +Q N L I S E+E+ + Sbjct: 1 MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60 Query: 58 PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 + G TV A L +I + L A I + + G+S F L + P + Sbjct: 61 EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118 Query: 118 FPSTKEEEY 126 +P E Sbjct: 119 YPLLTTENS 127 >gi|294660637|ref|NP_853508.2| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str. R(low)] gi|284812301|gb|AAP57076.2| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str. R(low)] gi|284931008|gb|ADC30947.1| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str. R(high)] Length = 391 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 57/385 (14%), Positives = 145/385 (37%), Gaps = 22/385 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +S LE + + N + ++ ++ ++ +I +S ++ I Sbjct: 1 MKFFTSKSSFLEAIKFSSNFSSDNNFEQLLKNLYIKIDNKECKIYSSNGQVSSIYKIEDD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+ G + V+A L I++ + +N ++ I G L + + Sbjct: 61 IDVEEEGEVIVNAKKLITIIQSIVSDNFTLAKLDN----QLIIRAGKMQTSLNLEEDVSY 116 Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNG-IFFHINEEDLKLCAVAT 176 P + ++ +S ++ S + +++ + + + + ++ I F +D+ + + Sbjct: 117 PEIEIDDSNFSVIDVDSFLFAKSIKKVIHSTSFQTTKNSISSAINFQKEADDMNIWITGS 176 Query: 177 DGHRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232 D +L+ + + + V ++ + L KD +K+S ++ L Sbjct: 177 DAIKLSSCYYKVNDTEDALKAKFNFSVNALSLSYVAAFLKDKDQLLLKISKKSDKVVLTN 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNL---RQAVDRVSIMSSVRIQAVK- 287 + +R+ + FP ++ ++ + V+ + A+ V +S Sbjct: 237 NKFVLYLRVENEPFPEFKKILNANKVVSSFVVDKDLISNNLHALTGVLSLSDQGKNNADA 296 Query: 288 -LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + L ++ ++ D+ ++ + DI N YL E I S ++ E Sbjct: 297 NFEILKNTLRISTNSFDIASYNSEFDISEFQGEVKDINLNPFYLQEHIKMFESKDI---E 353 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNK 370 L S+ S ++ +K++ K Sbjct: 354 FKLLLQSAISGCILKVCEKNNDQFK 378 >gi|284931765|gb|ADC31703.1| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str. F] Length = 391 Score = 115 bits (289), Expect = 1e-23, Method: Composition-based stats. Identities = 62/397 (15%), Positives = 149/397 (37%), Gaps = 25/397 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +S LE + + N + ++ ++ ++ +I +S ++ I Sbjct: 1 MKFFTSKSSFLEAIKFSSNFSSDNNFEQLLKNLYIKIDNKECKIYSSNGQVSSIYKIEDD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 V+ G + V+A L I++ + +N ++ I G L + + Sbjct: 61 IDVEEEGEVIVNAKKLITIIQSIVSDNFTLAKLDN----QLIIRAGKMQTSLNLEEDVSY 116 Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNG-IFFHINEEDLKLCAVAT 176 P + ++ +S ++ S + +++ + + + + ++ I F +D+ + + Sbjct: 117 PEIEIDDSNFSVIDVDSFLFAKSIKKVIHSTSFQTTKNSISSAINFQKEADDMNIWITGS 176 Query: 177 DGHRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232 D +L+ + + + V ++ + L KD +K+S ++ L Sbjct: 177 DAIKLSSCYYKVNDTEDALKAKFNFSVNALSLSYVAAFLKDKDQLLLKISKKSDKVVLTN 236 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNL---RQAVDRVSIMSSVRIQAVK- 287 + +R+ + FP ++ ++ + V+ + A+ V +S Sbjct: 237 NKFVLYLRVENEPFPEFKKILNANKVVSSFVVDKDLISNNLHALTGVLSLSDQGKNNADA 296 Query: 288 -LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345 + + L ++ ++ D+ ++ + DI N YL E I S ++ E Sbjct: 297 NFEILKNTLRISTNSFDIASYNSEFDISEFQGEVKDINLNPFYLQEHIKMFESKDI---E 353 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 L S+ S ++ +K NN K+ VL P Sbjct: 354 FKLLLQSAISGCILKVCEK---NNDQFKLKFIQVLAP 387 >gi|289807127|ref|ZP_06537756.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. AG3] Length = 102 Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 14/116 (12%) Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 QA R +I+S+ + + V+L +S ++L +T +NP+ +A E ++V Y M+I FN Y+ Sbjct: 1 QAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYV 60 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++++ + + V L S SSV I +A YV+MPMR+ Sbjct: 61 LDVLNALKC-----ETVRIMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 102 >gi|13357635|ref|NP_077909.1| DNA pol III beta chain [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|167971016|ref|ZP_02553293.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] gi|168282152|ref|ZP_02689819.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|168308310|ref|ZP_02690985.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|170761919|ref|YP_001752158.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|11356839|pir||C82937 DNA pol III beta chain UU079 [imported] - Ureaplasma urealyticum gi|6899030|gb|AAF30484.1|AE002107_8 DNA pol III beta chain [Ureaplasma parvum serovar 3 str. ATCC 700970] gi|168827496|gb|ACA32758.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 3 str. ATCC 27815] gi|171902942|gb|EDT49231.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 1 str. ATCC 27813] gi|182676125|gb|EDT88030.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 14 str. ATCC 33697] gi|186700969|gb|EDU19251.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 6 str. ATCC 27818] Length = 379 Score = 114 bits (287), Expect = 2e-23, Method: Composition-based stats. Identities = 53/352 (15%), Positives = 139/352 (39%), Gaps = 13/352 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M++ + ++E + + I N + VL++ + + K + ++ I Sbjct: 1 MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEG 60 Query: 61 VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 + G + V+A ++ ++ KL+D + + + + I + + + F Sbjct: 61 FEYFNSGKVLVTAKIILGLISKLKDKSVLLKQID---TNILLIKTENFETQINTMNIEGF 117 Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174 P+ E L +++ + + + E ++GI + KL A+ Sbjct: 118 PNLNFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPISGILIDTQTLENKLIAI 177 Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIE 233 TD + + + + + K K + EIL+ + S + +V + + I Sbjct: 178 GTDKIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKIN 237 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291 + R+IDG +PN ++ +N + + L + ++R ++I+ + + + + Sbjct: 238 DAILQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRID 297 Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342 ++ +++ ++G E M++ N + N L ++ N +++V Sbjct: 298 KNEAEISLTTFEIGNMKEKMSIVNLNNKSAEFILNPSLLAHVLKNFDNNDVT 349 >gi|297201230|ref|ZP_06918627.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] gi|297147836|gb|EDY56941.2| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083] Length = 388 Score = 114 bits (286), Expect = 2e-23, Method: Composition-based stats. Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 35/263 (13%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 +A+ L ++ FA +T+ L G+ F I E L VATD +RLAVA Sbjct: 155 TVRLTVAAPELGAALDTVRFAASTDPELPMLGGVLFDIEGES--LHVVATDRYRLAVARA 212 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 + +IVP + + +R L + V+ L R+ L ++ + +D +F Sbjct: 213 GVTGHEGSRVQVIVPT-PLADAMRALLHGEGPVRFLLDGDRVALEAGDGQVAGQCLDHDF 271 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL----SSDKLCMTVDNP 302 P+Y+ ++P + D+ V + R+ ++ + S LSL + + D Sbjct: 272 PDYRRLLPQAGDRRALVEVADFRRTLE-TGPVRSDETGTHDLSLLRVEDDGTVTVCAD-- 328 Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 G A P + N + D +V L + + + IR Sbjct: 329 --GDA---------GDPGRVAVN-----RAFLLDALAAAGRDRLVLELAAPTAPIAIRRP 372 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 D + F +LMP+R+ Sbjct: 373 DDEGG---------FSILMPVRL 386 Score = 39.8 bits (92), Expect = 0.65, Method: Composition-based stats. Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 15/158 (9%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++TV ++ L +P+ VL L + A+ + Sbjct: 157 RLTVAAPELGAALDTVRFAASTDPELPMLGGVLFDIEGESLHVVATDRYRLAVARAGVTG 216 Query: 62 DVCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118 GS + V L D +R L G F + G V + GD Q + +F Sbjct: 217 HE-GSRVQVIVPTP-LADAMRALLHGEGPVRFLLD--GDRVALEAGDGQVAGQCL-DHDF 271 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156 P Y L + + + T E Sbjct: 272 P-------DYRRLLPQAGDRRALVEVADFRRTLETGPV 302 >gi|6226601|sp|P47247|DPO3B_MYCGE RecName: Full=DNA polymerase III subunit beta Length = 364 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 57/367 (15%), Positives = 147/367 (40%), Gaps = 30/367 (8%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD--VCGSITVSAHLLYDI 77 II P + L++A + + A+ + + ++D GS+ V + D+ Sbjct: 5 IISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKIFNDL 64 Query: 78 VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST-----KEEEYVYSFEL 132 + +++ K+ + + ++ L + +EFP + F++ Sbjct: 65 INGIKEEIITIQEKDQT----LLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKI 120 Query: 133 ASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191 S+L +++ +++ EI NG+ F+ ++ A+D ++L+V E+ Q Sbjct: 121 NYSLLVKGIKKIFHSVSNNREISSKFNGVNFN-GSNGKEIFLEASDTYKLSVFEIK---Q 176 Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-------IHLNIESLSMSVRLIDG 244 + I+ + I +D S+ + + +++++ +S ++ Sbjct: 177 ETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNE 236 Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPD 303 +FP + ++ V L+ A+ R+ ++ + R + ++S +L + + Sbjct: 237 KFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNN 296 Query: 304 MGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 +G ++E ++ + ++I FN LL+ I++ S+ E+ F ++ I K Sbjct: 297 IGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESN-----EINFDFQGNSKYFLITSK 351 Query: 363 DKDSKNN 369 + Sbjct: 352 SEPELKQ 358 >gi|21219691|ref|NP_625470.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)] gi|6468432|emb|CAB61592.1| putative DNA polymerase III beta chain [Streptomyces coelicolor A3(2)] Length = 386 Score = 114 bits (285), Expect = 3e-23, Method: Composition-based stats. Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 34/251 (13%) Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 FA + L G+ F + + L L VATD +R+AVA + V +IVP Sbjct: 159 VRFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPA- 215 Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 + + +R L D + ++ R+ L S R + +FP+Y+ ++ + + V Sbjct: 216 PLVDAMRALLGDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVTV 275 Query: 264 NCTNLRQAVD----RVSIMSSVRIQA----VKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 + R+A++ RV+ QA V ++ + + + +A Sbjct: 276 DVPEFREALESGPVRVAEDREPGRQARDVSVLSTVDDGTVIVCGEGAPDEEA-------- 327 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKV 374 + + + YLL+ + D +V ++ + + IR D + Sbjct: 328 DGAAHHVGVDRGYLLDALAAAD-----RDRLVLEFGPAATAPLAIRRMDDE--------- 373 Query: 375 NAFYVLMPMRI 385 AF VLMP+R+ Sbjct: 374 GAFSVLMPVRL 384 Score = 37.1 bits (85), Expect = 5.3, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 7/136 (5%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS---ITVSAHLLYD 76 R +P+ VL L + A+ + A V G+ + V A L D Sbjct: 162 AAGRDPELPMLGGVLFDVEGDTLHLVATDRYRMAVARLAA-VGHGGAREQVIVPAP-LVD 219 Query: 77 IVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135 +R L D F E + T S L ++ + + Sbjct: 220 AMRALLGDDGPARFAVEGDRVTLEAAERQASGRRLAHDFP-DYRRLVQLPPGRRVTVDVP 278 Query: 136 VLKNLVERTHFAMATE 151 + +E +A + Sbjct: 279 EFREALESGPVRVAED 294 >gi|256789227|ref|ZP_05527658.1| DNA polymerase III beta chain [Streptomyces lividans TK24] gi|289773118|ref|ZP_06532496.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] gi|289703317|gb|EFD70746.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24] Length = 372 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 34/251 (13%) Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 FA + L G+ F + + L L VATD +R+AVA + V +IVP Sbjct: 145 VRFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPA- 201 Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 + + +R L D + ++ R+ L S R + +FP+Y+ ++ + + V Sbjct: 202 PLVDAMRALLDDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVAV 261 Query: 264 NCTNLRQAVD----RVSIMSSVRIQA----VKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315 + R+A++ RV+ QA V ++ + + D +A Sbjct: 262 DVPEFREALESGPVRVAEDREPGRQARDVSVLSTVDDGTVIVCGDGAPDEEA-------- 313 Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKV 374 + + + YLL+ + D +V ++ + + IR D + Sbjct: 314 DGAAHHVGVDRGYLLDALAAAD-----RDRLVLEFGPAATAPLAIRRMDDE--------- 359 Query: 375 NAFYVLMPMRI 385 AF VLMP+R+ Sbjct: 360 GAFSVLMPVRL 370 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS---ITVSAHLLYD 76 R +P+ VL L + A+ + A V G+ + V A L D Sbjct: 148 AAGRDPELPMLGGVLFDVEGDTLHLVATDRYRMAVARLAA-VGHGGAREQVIVPAP-LVD 205 Query: 77 IVRKLQDGA 85 +R L D Sbjct: 206 AMRALLDDD 214 >gi|147668838|ref|YP_001213656.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp. BAV1] gi|146269786|gb|ABQ16778.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp. BAV1] Length = 419 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 35/268 (13%) Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + L + R A E+ R L + F + D KL V+ DG+RLA Sbjct: 107 SPSNAVKPNLGALELSEALSRVVPFTAKEDNRPVLQSVLFKVA--DGKLTMVSADGYRLA 164 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 + ++D +++ R + ++ L V+V +S L+ SL + LI Sbjct: 165 MVKLDFDG---DEGQVLINRDELRGVISALRRA-YRVRVGFEKSGESLDGMSLVLDTELI 220 Query: 243 -------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 DG FP Y+ +IP + + + + +AV + ++S + + L++ + KL Sbjct: 221 RYKWRGADGNFPEYEKLIPANFNTFVSFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKL 280 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 M+ + D G A + I + YL + + V +L S S Sbjct: 281 TMSSPD-DKGMA--EIPADTQGDG-KIRLDGSYLADALRACGG------MVELKLVDSKS 330 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + D + V+MPM Sbjct: 331 PMLFTSPDYEL------------VVMPM 346 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 30/237 (12%), Positives = 73/237 (30%), Gaps = 19/237 (8%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 ++ E L +++ PV VL + DG L + ++ + D G + Sbjct: 120 ELSEALSRVVPFTAKEDNRPVLQSVLFKVADGKLTMVSADGYRLAMVKLDFDGDE-GQVL 178 Query: 69 VSAHLLYDIVRKLQD------GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122 ++ L ++ L+ G + S + + ++ + E+ Sbjct: 179 INRDELRGVISALRRAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLI 238 Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 + ++ V + ++ + + + KL + D +A Sbjct: 239 PANFNTFVSFDTNEAIRAVS-SLKVLSDSKAYPI------DLTIGNGKLTMSSPDDKGMA 291 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +I A I + + + LR +K+ S+S + + V Sbjct: 292 ----EIPADTQGDGKIRLDGSYLADALRACGGM-VELKLVDSKSPMLFTSPDYELVV 343 >gi|300088280|ref|YP_003758802.1| DNA polymerase III subunit beta [Dehalogenimonas lykanthroporepellens BL-DC-9] gi|299528013|gb|ADJ26481.1| DNA polymerase III beta chain [Dehalogenimonas lykanthroporepellens BL-DC-9] Length = 419 Score = 113 bits (283), Expect = 5e-23, Method: Composition-based stats. Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 35/268 (13%) Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 L + L + R A E+ R L + F + D KL V+ DG+RLA Sbjct: 107 SPSNSVKPNLGALELSEALSRVVPFTAKEDNRPVLQCVLFKVA--DGKLTMVSADGYRLA 164 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 + ++D +++ R + ++ L V+V +S L+ SL + LI Sbjct: 165 MVKLDFDG---DEGQVLINRDELRGVISALRRA-YRVRVGFEKSGESLDGMSLVLDTELI 220 Query: 243 -------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 DG FP Y+ +IP + + + +AV + ++S + + L++ + KL Sbjct: 221 RYKWRGADGNFPEYEKLIPAYFNTFVSFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKL 280 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355 M+ + D G A + I + YL + + V +L S S Sbjct: 281 TMSSPD-DKGMA--EIPADTQGEG-RIRLDGSYLADALRACGG------MVELKLVDSKS 330 Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 + D + V+MPM Sbjct: 331 PMLFTSPDYEL------------VVMPM 346 Score = 39.8 bits (92), Expect = 0.66, Method: Composition-based stats. Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 19/237 (8%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68 ++ E L +++ PV VL + DG L + ++ + D G + Sbjct: 120 ELSEALSRVVPFTAKEDNRPVLQCVLFKVADGKLTMVSADGYRLAMVKLDFDGDE-GQVL 178 Query: 69 VSAHLLYDIVRKLQDGAQI----SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124 ++ L ++ L+ ++ E+ G + + + + + FP ++ Sbjct: 179 INRDELRGVISALRRAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRG-ADGNFPEYEKL 237 Query: 125 EYVYSFELASSVLKNLVERTH--FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 Y S + ++ + + + KL + D +A Sbjct: 238 IPAYFNTFVSFDTNEAIRAVSSLKVLSDSKAYPI------DLTIGNGKLTMSSPDDKGMA 291 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 +I A I + + + LR +K+ S+S + + V Sbjct: 292 ----EIPADTQGEGRIRLDGSYLADALRACGGM-VELKLVDSKSPMLFTSPDYELVV 343 >gi|20799549|gb|AAM28542.1|AF494512_1 DNA polymerase III beta subunit [Tomato big bud phytoplasma] Length = 273 Score = 113 bits (282), Expect = 6e-23, Method: Composition-based stats. Identities = 56/279 (20%), Positives = 130/279 (46%), Gaps = 16/279 (5%) Query: 39 DGLLEIKASGPEIEITGAI---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95 D + ++A I I GS+ + L DI++K+ + E+ L Sbjct: 1 DNVCYLEAMDYNKNIQLQIKDTDLVAKQNGSLVIIGKHLXDIIKKIDSCSLEMTLVEDYL 60 Query: 96 GTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIR 154 + I+ +S + L+ FP + + F + + +LK +++ + A + ++ + Sbjct: 61 ---LFINSKNSEYKLKVIDLQLFPPVSFDFQSDKFFAIKNEILKKIIKEVNVAASRDKQQ 117 Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS- 213 L G+ F I E L L +ATD R+A E+ + +I V K + E+ ++L Sbjct: 118 KTLMGVNF-IYENSL-LRVLATDTFRIAQKEISLDXNYFD-FNITVSYKNLEELYKLLEY 174 Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273 KD V +S+++ ++ L ++L L++G++P + + S +++N + + ++ Sbjct: 175 QKDELVHISINQQKMILRCDNLLFQTTLLEGKYPAWPIIKVSSFPFFVKMNRLDCLKTLE 234 Query: 274 RVSIM----SSVRIQAVKLSLS-SDKLCMTVDNPDMGKA 307 RVS++ ++ + L + + + ++ ++ ++G+A Sbjct: 235 RVSLVLTKEENIFSNIISLYIRLDNIIEISANSDEIGQA 273 >gi|330723617|gb|AEC45987.1| DNA polymerase III subunit beta [Mycoplasma hyorhinis MCLD] Length = 374 Score = 113 bits (282), Expect = 7e-23, Method: Composition-based stats. Identities = 66/375 (17%), Positives = 152/375 (40%), Gaps = 28/375 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +E+ + + + I N +LL+ L I ++ E+ I IP Sbjct: 1 MKFIIEKEKLEKYVERNLIAISNSNGYSALGGLLLELRRDGLVITSTDRELSIQSFIPNF 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G + V+A++ + + ++ V + G F ++ Sbjct: 61 EFIEINSLGRLLVNANMFKN-----ILKKLKNKISLEQVDNTVILRSGLDQFSIKLNDVD 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAM-----ATEEIRYYLNGIFFHINEEDLKL 171 EFP + + +S L+ ++ T FA T+E YL ++ D L Sbjct: 116 EFPELDFKNRGEKLIINASKLREAIKNTIFACYTSKENTKEKNNYLLFTCLNLKTRDNYL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A+D R+A+ ++I I I + K + + +L +K+ + + +I Sbjct: 176 EISASDRIRIAMETINIENPIE--LDIAIKNKNLKDF--VLEEAKEDIKLFIDDWKISYT 231 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIM-SSVRIQAVKL 288 E+ ++ L + + ++V P +D + ++ L + + +I+ SS + + Sbjct: 232 FENTTVQSVLFKETYKDIRSVFPKKDDIQYYFQIEKKELIEITSKATIISSSEKHNTLIF 291 Query: 289 SLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +++ D+L + + + G I++ N ++ + NYK+L + I+ D++ Sbjct: 292 NITEDELSVQFNEDEKGNSIIKTKNHVFSGPTLTFKVNYKFLKDAINVFE------DKIN 345 Query: 348 FRLDSSNSSVFIRGK 362 F + ++ + + I + Sbjct: 346 FFITANKTKLLINSQ 360 >gi|289610241|emb|CBI60296.1| unnamed protein product [Sordaria macrospora] Length = 125 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 3/128 (2%) Query: 45 KASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG 104 A+ +++I I A++D G+ITVSAH L+DI RKL +GAQ+ + + G Sbjct: 1 MATDLDLQIDETIAAAIDQAGAITVSAHTLFDIARKLPEGAQVQLSAAE---GRLTVVAG 57 Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164 + F L + P +FP E E FEL ++ LK ++++T FA++TEE RYYLNGIF H+ Sbjct: 58 RARFSLATLPRDDFPVIAEGELPTQFELPATTLKAIIDKTRFAISTEETRYYLNGIFLHV 117 Query: 165 NEEDLKLC 172 E C Sbjct: 118 AEMTASRC 125 >gi|304372807|ref|YP_003856016.1| DNA polymerase III beta subunit [Mycoplasma hyorhinis HUB-1] gi|304308998|gb|ADM21478.1| DNA polymerase III beta subunit [Mycoplasma hyorhinis HUB-1] Length = 374 Score = 112 bits (281), Expect = 8e-23, Method: Composition-based stats. Identities = 65/375 (17%), Positives = 151/375 (40%), Gaps = 28/375 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58 MK +E+ + + + I N +LL+ L I ++ E+ I IP Sbjct: 1 MKFIIEKEKLEKYVERNLIAISNSNGYSALGGLLLELRRDGLVITSTDRELSIQSFIPNF 60 Query: 59 --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116 ++ G + V+A++ + + ++ V + G F ++ Sbjct: 61 EFIEINSLGRLLVNANMFKN-----ILKKLKNKISLEQVDNTVILRSGLDQFSIKLNDVD 115 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAM-----ATEEIRYYLNGIFFHINEEDLKL 171 EFP + + +S L+ ++ T FA T+E YL + D L Sbjct: 116 EFPELDFKNRGEKLIINASKLREAIKNTIFACYTSKENTKEKNNYLLFTCLSLKTRDNYL 175 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231 A+D R+A+ ++I I I + K + + +L +++ + + +I Sbjct: 176 EISASDRIRIAMETINIENPIE--LDIAIKNKNLKDF--VLEEAKEDIELFIDDWKISYT 231 Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIM-SSVRIQAVKL 288 E+ ++ L + + ++V P +D + ++ L + + +I+ SS + + Sbjct: 232 FENTTVQSVLFKETYKDIRSVFPKKDDIQYYFQIEKKELIEITSKATIISSSEKHNTLIF 291 Query: 289 SLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +++ D+L + + + G I++ N ++ + NYK+L + I+ D++ Sbjct: 292 NITEDELSVQFNEDEKGNSIIKTKNHVFSGPTLTFKVNYKFLKDAINVFE------DKIN 345 Query: 348 FRLDSSNSSVFIRGK 362 F + ++ + + I + Sbjct: 346 FFITANKTKLLINSQ 360 >gi|195941090|ref|ZP_03086472.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str. EC4024] Length = 102 Score = 112 bits (281), Expect = 9e-23, Method: Composition-based stats. Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 14/116 (12%) Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329 QA R +I+S+ + + V+L +S +++ +T +NP+ +A E ++V Y M+I FN Y+ Sbjct: 1 QAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEAEEILDVTYAGAEMEIGFNVSYV 60 Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L++++ + + V L S SSV I +A YV+MPMR+ Sbjct: 61 LDVLNALKC-----ENVRILLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 102 >gi|121582887|ref|YP_973329.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans CJ2] gi|120596149|gb|ABM39587.1| DNA polymerase III beta subunit family protein [Polaromonas naphthalenivorans CJ2] Length = 366 Score = 112 bits (280), Expect = 1e-22, Method: Composition-based stats. Identities = 74/397 (18%), Positives = 164/397 (41%), Gaps = 48/397 (12%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I+ + L + + I +T ++ + +G L I A A Sbjct: 1 MNISTTIGALKHALQNVLKAI---HTKQITA----EFCNGQLHIHAC----ANGAHAKAL 49 Query: 61 VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G+ ++A L+ +I+ + S ++ E + +S G + L + E Sbjct: 50 VPSTGTLPNLVFQLTAKLVLNIINNCATETKCSISQDKED---LRLSFGGARIKLTRYTE 106 Query: 116 SEFPSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 E K +E S L+ + + ++ RY L G++F + +L Sbjct: 107 KEVDFFKWNSKDEHNEAIGHFESQNLRKAIMSVSRFYSDDDQRYQLRGVYFQSIQG--RL 164 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227 AT+G RLA ++V + +I+ + V ++ I+ + + V++S+ Sbjct: 165 VLAATNGTRLAEKITNLV--VRDFRPMIIGGEYVEALVSIIKNDEEDVEISIRGGNDATA 222 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 + + + S+ LI G +P+Y+++IP S D ++VN L A+DR+ +S V Sbjct: 223 VIFSTRNFSIKCPLIGGAYPSYRSIIPAS-DHHVQVNAAALIAALDRMEAVS---GNFVH 278 Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 L+ S++ + + + D + E + ++ + + K L + +++++V+ + Sbjct: 279 LNFSNEIVTVETPDND---SSEQIQAEGDDFTLSLAIQPKLLAISLAAVTTEKVL---IA 332 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L + N+S + N + + ++ P++ Sbjct: 333 VCLANGNTSFL-------TIKNTEIQDGWLALVSPIK 362 >gi|330948082|gb|EGH48342.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 109 Score = 111 bits (279), Expect = 1e-22, Method: Composition-based stats. Identities = 33/109 (30%), Positives = 63/109 (57%) Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 HRLA+ + + A +IVPRK + E+ R+L+ +D +V + L + I + + Sbjct: 1 HRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFT 60 Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287 +L+DG+FP+Y+ V+P DK + + LR+A R +I+S+ + + ++ Sbjct: 61 SKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIR 109 >gi|270307680|ref|YP_003329738.1| DNA polymerase III domain protein [Dehalococcoides sp. VS] gi|270153572|gb|ACZ61410.1| DNA polymerase III domain protein [Dehalococcoides sp. VS] Length = 413 Score = 111 bits (277), Expect = 3e-22, Method: Composition-based stats. Identities = 49/252 (19%), Positives = 96/252 (38%), Gaps = 35/252 (13%) Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 + R E+ + L + F + D KL V+ DG RL++ ++D + + Sbjct: 123 EALSRVLPFTTKEDSKPILQCVLFRVK--DGKLTMVSADGFRLSLVKLDFDGDEGE---V 177 Query: 199 IVPRK-------AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251 ++ R A+ R+ S + S + SL + L+ E++ R DG FP Y+ Sbjct: 178 LISRDDLWGVVSALRRAYRVRVSFEKSGE-SLDGMSLVLDTEAIRYKWRGADGNFPEYEK 236 Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311 +IP + + +AV + ++S + + L++ + KL M+ + K + Sbjct: 237 LIPADFTTFVSFDTNEAIKAVSSLKVLSDSKNYPIDLTIGNGKLTMSSPD---EKGQTEI 293 Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 I + +L + + V +L +S S + D + Sbjct: 294 PADTQGEG-RIRLDGSFLADALRACGG------MVELKLVNSQSPMLFTSPDYEL----- 341 Query: 372 NKVNAFYVLMPM 383 V+MPM Sbjct: 342 -------VVMPM 346 Score = 44.5 bits (104), Expect = 0.025, Method: Composition-based stats. Identities = 29/238 (12%), Positives = 77/238 (32%), Gaps = 21/238 (8%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPASVDVCGSI 67 ++ E L ++++ P+ VL + DG L + ++ + + + D G + Sbjct: 120 ELSEALSRVLPFTTKEDSKPILQCVLFRVKDGKLTMVSADGFRLSLV-KLDFDGDE-GEV 177 Query: 68 TVSAHLLYDIVRKLQDGAQISFFKE------NELGTEVNISHGDSNFYLQSFPESEFPST 121 +S L+ +V L+ ++ E + + ++ + E+ Sbjct: 178 LISRDDLWGVVSALRRAYRVRVSFEKSGESLDGMSLVLDTEAIRYKWRGADGNFPEYEKL 237 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 ++ ++ V + ++ + + + KL + D Sbjct: 238 IPADFTTFVSFDTNEAIKAVS-SLKVLSDSKNYPI------DLTIGNGKLTMSSPD---- 286 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 + +I A I + + + LR +K+ S+S + + V Sbjct: 287 EKGQTEIPADTQGEGRIRLDGSFLADALRACGGM-VELKLVNSQSPMLFTSPDYELVV 343 >gi|294632544|ref|ZP_06711104.1| DNA polymerase subunit III beta [Streptomyces sp. e14] gi|292835877|gb|EFF94226.1| DNA polymerase subunit III beta [Streptomyces sp. e14] Length = 281 Score = 110 bits (275), Expect = 5e-22, Method: Composition-based stats. Identities = 48/276 (17%), Positives = 105/276 (38%), Gaps = 33/276 (11%) Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 E+ P+ L + L ++ FA T+ L G+ I ++ L++ Sbjct: 33 RENPMPALPATP--VHLALPAPELAAALDAVRFAAGTDPELPMLGGVLLDIEDDALRV-- 88 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATD +R+A+A +I P + + +R L + + ++++ + L Sbjct: 89 VATDRYRMAIARTRTTTHDGPHTQVIAP-LPLTDAIRALLDGEETAQLAVEGDLLTLGTG 147 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLS 291 + R +D +FP+ + ++ + R++ R A++ + +S + LS Sbjct: 148 DRRTTGRCLDHDFPDCRRLLDLPTGRRARIDTAVFRTALETGPVHASEPPQQDGAPRDLS 207 Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMD--ICFNYKYLLEIIDNISSDEVVDDEVVFR 349 L +T D ++ V + + F+ YLL + + Sbjct: 208 --VLRVTADG--------TVTVCGDGDDTSDAVAFDRDYLLHALTA-----AARPTLTLE 252 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + +R D + + F +LMP+R+ Sbjct: 253 FGTPATPLAVRRPDDE---------DTFSILMPVRL 279 Score = 40.2 bits (93), Expect = 0.54, Method: Composition-based stats. Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 7/127 (5%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPASVDVCGSITVSAHLLYDIV 78 +P+ VLL D L + A+ + I + D + ++ L D + Sbjct: 64 AAGTDPELPMLGGVLLDIEDDALRVVATDRYRMAIARTRTTTHDGPHTQVIAPLPLTDAI 123 Query: 79 RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS---TKEEEYVYSFELASS 135 R L DG + + G + + GD + + +FP + + ++ Sbjct: 124 RALLDGEETAQLAVE--GDLLTLGTGDRRTTGRCL-DHDFPDCRRLLDLPTGRRARIDTA 180 Query: 136 VLKNLVE 142 V + +E Sbjct: 181 VFRTALE 187 >gi|312600975|gb|ADQ90230.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 168] Length = 362 Score = 109 bits (274), Expect = 5e-22, Method: Composition-based stats. Identities = 67/340 (19%), Positives = 132/340 (38%), Gaps = 32/340 (9%) Query: 18 CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP----ASVDVCGSITVSAHL 73 I P L+ L I ++ EI I + GS + Sbjct: 2 QSAILNNINSP-LSSFFLKLTRSGLFIISTNSEISYKVFINKKDLIEIYDVGSCLIDGVF 60 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 L D++RK Q+SF +G+E+ + D+ F + S FP E+ + Sbjct: 61 LRDVIRK--SDKQLSFHL---IGSELKVFWEDALFSKTTRDSSFFPEINFEQKGIKLTVN 115 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 + K ++ T FA + L+ I E L ATD R A +++I + Sbjct: 116 AKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSATDTSRFASEKIEISNKS- 172 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 +I V K + + I D +++++ S+I ++L++ R+ E+ + N++ Sbjct: 173 -RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTIQSRIFTIEYKDISNIL 229 Query: 254 PCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311 P ++ L +N ++ +D+ +I++ + + LSLS + L + D G++ Sbjct: 230 PKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNALKGYISQYDSGQSNVQT 289 Query: 312 --------------NVYYNECPMDICFNYKYLLEIIDNIS 337 + ++ + NY+YL + I Sbjct: 290 KNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 329 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 2/157 (1%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 K+TV + + + + P+ + L++ G L A+ + I S Sbjct: 111 KLTVNAKNFKRAIKNTAFATTNNPSQPILSAINLRSEAGFLHFSATDTSRFASEKIEISN 170 Query: 62 DVCGSITVSAHLLYDIV-RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +I+VSA L D + +L +++ N++ F ++ S Sbjct: 171 KSRINISVSAKNLKDFIPPELDKDIELNIESSKISYIYDNLTIQSRIFTIEYKDISNILP 230 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL 157 K+ E +YS + + +L+++T ++ L Sbjct: 231 -KDSEILYSLTINKRDILDLIDKTTIITPGKDNVINL 266 >gi|91202142|emb|CAJ75202.1| similar to DNA polymerase III, beta subunit DnaN [Candidatus Kuenenia stuttgartiensis] Length = 445 Score = 109 bits (273), Expect = 8e-22, Method: Composition-based stats. Identities = 67/406 (16%), Positives = 136/406 (33%), Gaps = 65/406 (16%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS----VDV 63 + + ++ A + +++K T +LL + L ++++ + +G I AS Sbjct: 69 NALKNIVDIAGKFVDKKYT----GDLLLTIDGDKLRVESTDLTVHFSGYIEASDKYHFSH 124 Query: 64 CG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G S+ VS L + L I + + I G F+L+ FP Sbjct: 125 DGDINSVCVSPQKLG---KLLPHINGIVDMRITKREETPGIQLG--EFFLEGQGADGFPV 179 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S + + + + T A+ R GI F + E C V +G R Sbjct: 180 IYPIKNERSRTVMVEGIADKLGYTSKAIGKTPARSVFEGILFDLKEG----CMVCANGDR 235 Query: 181 LAVAEVDIVAQIAKMPSII---------VPRKAV-------GEILRILSSKDSSVKVSLS 224 L + + I VP+K + GE+ ++S V+ Sbjct: 236 LHATILATEYPAPSLTDKINACDGSYALVPKKILLAGKYLSGEVAGVVSVGTEKVQEYCE 295 Query: 225 ESRIHLNI---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281 + LNI + ++ + I+G +P Y+ VIP + ++ ++ + Sbjct: 296 RAVFGLNIPGCKDAYITSQCIEGAYPRYKEVIPTTYKNSFTTTRDDVVSSLKKAQ----- 350 Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIES-----MNVYYNECPMDICFNYKYLLEIIDNI 336 ++ + + M+ N + +N Y P N Y+L+ I + Sbjct: 351 --ANLRDDVDYGCITMSFSNEEGATIKTKCYSAFVNGNYTGEPFRGLVNIGYVLDGIQEM 408 Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 + E+ + + + + V+MP Sbjct: 409 PAGEIKIE--------------LPENGEYEGWCIRGEQGFTAVVMP 440 >gi|126348431|emb|CAJ90154.1| putative DNA polymerase III beta chain [Streptomyces ambofaciens ATCC 23877] Length = 383 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 61/284 (21%), Positives = 113/284 (39%), Gaps = 37/284 (13%) Query: 110 LQSFPESEFPSTKEEEYVYSFELA--SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167 L++ + S L+ + L ++ FA T+ L GI F + + Sbjct: 127 LRAILDQRENPMPTSPPTASVRLSFPAPALAAALDAVRFAAGTDPGLPMLAGILFDLEGD 186 Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 L L VATD +R+AVA VD A +VP + +R L S D V +++ Sbjct: 187 SLHL--VATDRYRMAVARVDAGAHDGPRVQALVP-VPLAGAMRALLSHDEPVGLTVGGDS 243 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD----RVSIMSSVRI 283 + L + + +D +FP+Y+ ++ + + V+ R+A++ R +S Sbjct: 244 VTLETGGGRTAGQCLDHDFPDYRRLVHLPSGRRTLVDVPVFRKALESGPVRTGEVSEQDG 303 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPM--DICFNYKYLLEIIDNISSDEV 341 + LS+ L + D G ++ V + D + YLLE ++ Sbjct: 304 TSHDLSV----LRV----ADDG----TVTVREDGDDHPDDFAVDRGYLLEALEAGG---- 347 Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + +V + + + IR D + F +LMP+R+ Sbjct: 348 -RERLVLEFGAPTAPLAIRRPDD---------ASTFSLLMPVRL 381 >gi|216796|dbj|BAA14416.1| DnaN protein [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 210 Score = 108 bits (270), Expect = 2e-21, Method: Composition-based stats. Identities = 36/215 (16%), Positives = 83/215 (38%), Gaps = 10/215 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57 M ++ R +L+ L A ++I+ KN P + L + + + + + + Sbjct: 1 MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60 Query: 58 --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G + + + +++R+L D + E+ E+ I +S+F + Sbjct: 61 NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVED---NELIIKTNNSDFSIGVLNS 117 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++P E F L +K + + +M + L G+ + + + Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKL--NNNQAIFST 175 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210 TD R++ ++I + + I +P K E+ + Sbjct: 176 TDSFRISQKILEIQSDNNEDIDITIPFKTALELPK 210 >gi|291333916|gb|ADD93596.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 156 Score = 107 bits (268), Expect = 3e-21, Method: Composition-based stats. Identities = 50/141 (35%), Positives = 85/141 (60%), Gaps = 3/141 (2%) Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172 P S+FPS ++ S +++SS L +++ T AMA +++RYYLNG LC Sbjct: 1 MPASDFPSIDSADFSSSIKISSSALADMIGSTSVAMAAQDVRYYLNGCLVETKGNA--LC 58 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 V+TDGHRLA + I + + +IVPRKAV E+ +I+SS D + +++S+++I++ Sbjct: 59 VVSTDGHRLAFTKTSIDG-LKEDFRVIVPRKAVMELQKIISSNDEEITLNVSQNQINVLG 117 Query: 233 ESLSMSVRLIDGEFPNYQNVI 253 S + +LI+G +P+Y+ Sbjct: 118 SVFSFTSKLIEGNYPDYEKFF 138 >gi|330947989|gb|EGH48301.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 112 Score = 106 bits (266), Expect = 4e-21, Method: Composition-based stats. Identities = 33/111 (29%), Positives = 65/111 (58%) Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268 R+L+ +D +V + L + I + + +L+DG+FP+Y+ V+P DK + + L Sbjct: 1 ARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQAL 60 Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 R+A R +I+S+ + + ++L L+S +L + +NP+ +A E ++V YN Sbjct: 61 REAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYNGDA 111 >gi|149199127|ref|ZP_01876166.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155] gi|149137724|gb|EDM26138.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155] Length = 465 Score = 106 bits (266), Expect = 5e-21, Method: Composition-based stats. Identities = 66/377 (17%), Positives = 144/377 (38%), Gaps = 34/377 (9%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSI 67 +++ ++ + R++ K++ V ++ ++ A+ + Sbjct: 7 NELQQIKTNFARVL-SKSSNKFLSQVCVEIFAKGFQLTATNLSETLVYRSKEQGGTPSEF 65 Query: 68 TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV 127 +S L IV ++ G + E E +V S+G S YL + + E + Sbjct: 66 LISPETLKRIVAGMKRGDSVVLRYEEEK-LQVKFSNGMSLSYLTIDSVNYPETLSELKST 124 Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187 + + ++ R + +T+ + LN IFF L VATDG RL ++ Sbjct: 125 EGLDASDLIVNY--RRAYNTASTDPAKDVLNSIFFDSEAHKL----VATDGRRL----LN 174 Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247 I ++ ++P + ++L++ + + + I + S + ++G +P Sbjct: 175 IKTELQVKQDTLIP---LTKVLKVSKIFEEESLIKVDHKTIQIANSSWLYQCQQVEGGYP 231 Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307 N++ V+P S + + ++ L D + + S + + L +KL V++ +A Sbjct: 232 NWRTVVPESYESTIDLSGCELAFFCDTIRQLQSDKGEH-SLHWHDNKLIFAVNDESGQRA 290 Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 + N+ P + +LL+ + D V L ++S + I Sbjct: 291 ASIVGAQSNDSPKSFAVDPNFLLDALIAAHGD------VQIHLTDASSPICI-------- 336 Query: 368 NNKDNKVNAFYVLMPMR 384 + N V+MP R Sbjct: 337 ----SSSNTQSVIMPKR 349 >gi|160934676|ref|ZP_02082062.1| hypothetical protein CLOLEP_03549 [Clostridium leptum DSM 753] gi|156866129|gb|EDO59501.1| hypothetical protein CLOLEP_03549 [Clostridium leptum DSM 753] Length = 393 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 67/391 (17%), Positives = 141/391 (36%), Gaps = 35/391 (8%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58 MK TV R + + + +I+ IP +L++A++ G+L I + I + Sbjct: 1 MKFTVNRLLMYQAVKTVLKIVRPNKEIPELGGLLIEADESSGMLTITGTDIRTHIQRRLR 60 Query: 59 AS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ G + + +L +++ L D F + V + G + + S Sbjct: 61 LEHIEESGGMILK-PILAEMLYLLTD----EFVELESEKNLVTLRSGSCQYTISSLAAKS 115 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI-FFHINEEDLKLCAVAT 176 FP + + ++ + +L+ RT FA + I Y G + I+ A AT Sbjct: 116 FPKLQIPFPEDTIQVKG--INSLIRRTVFAANGDNIDYNRAGFSYVKISFRGGMATAEAT 173 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 DG +AV A +I+ KA+ + +++ + + V + E L Sbjct: 174 DGSCIAVTASPHCAD--GDLDMILHEKALTVLDSVVNPNEE-LYVGIVGKVAVFMKEDLF 230 Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDK 294 S L G + ++ + + ++ L + V +S++ + + + L + DK Sbjct: 231 FSTMLFTGNYLEASKLLSNFHGSYQATIDAKQLYELVSGLSVIFDTKDDKCINLRIEPDK 290 Query: 295 LCMTV-----DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD---------- 339 +C V + KA ++ + K L + + ++ Sbjct: 291 VCAQVITGRCSSASQVKAAGTIPTPADGFHYR----PKLLTDCLRRLAGPVQMEIDQQGF 346 Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370 V++ S I ++ K K Sbjct: 347 AVMNANGSRYFISPRGPARIYQEENPEKKPK 377 >gi|149200630|ref|ZP_01877633.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155] gi|149136279|gb|EDM24729.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155] Length = 153 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 3/144 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ER + + A +I + T+ + H LL L I A+G + IT + A+ Sbjct: 1 MKFTIERDRLNNAVKKAGSVISARPTVSIMGHFLLDVQANHLVITATGLDQTITLTLEAN 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 ++ G TVSA +L +V++L +G E + VN+ + F LQS +FP Sbjct: 61 IEQEGKATVSAKILSQLVQRLPNGDVSVSLDERGM---VNVVCARNAFSLQSLDPLQFPI 117 Query: 121 TKEEEYVYSFELASSVLKNLVERT 144 EE F +++S L + Sbjct: 118 EGREESRREFMISTSQLCGNIANV 141 >gi|1352303|sp|P29438|DPO3B_SERMA RecName: Full=DNA polymerase III subunit beta gi|407187|gb|AAA02925.1|AAA02925 DnaN [Serratia marcescens] Length = 78 Score = 106 bits (264), Expect = 8e-21, Method: Composition-based stats. Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK VER +L+ L + + T+P+ ++LLQ +G L + + E+E+ + S Sbjct: 1 MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60 Query: 61 V-DVCGSITVSAHLLYDI 77 G+ TV A +DI Sbjct: 61 QPHEPGATTVPARKFFDI 78 >gi|171913191|ref|ZP_02928661.1| DNA polymerase III, beta subunit [Verrucomicrobium spinosum DSM 4136] Length = 507 Score = 105 bits (263), Expect = 1e-20, Method: Composition-based stats. Identities = 64/397 (16%), Positives = 137/397 (34%), Gaps = 41/397 (10%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPASV 61 IT+ +++ L +II + +T+PV + ++ +G + + A+ + +T + Sbjct: 25 ITLPVAELKSALSGFSKIIPKNSTLPVLQCLKIERTQEGWICLTATDLDRFVTLRLEQPA 84 Query: 62 D-VCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118 S+ V L +V+ +I N + ++ ++ P E+ Sbjct: 85 KGEPASLLVPFDNLQKVVKTCDKNQRIHLEAGPNNHHSIKFDLVGQIGETKSKAPPVEEY 144 Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178 P + S + L T T++ R L G+ +++ D V TDG Sbjct: 145 PEIPRINGEPTPVSESLRMAILDAMT--CACTDDTRPPLKGVCVDVSKHDAHY-VVGTDG 201 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIE 233 H L + S+++PR + +KVS SE + ++ Sbjct: 202 HHLYSCN---SFNLPFKKSLLIPRHKFLAWKDFNLDGEWKMKVSDTSDAKSEVSLQISSR 258 Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIM--SSVRIQAVKLS 289 + + G FPN+Q +P L + NL+ + M + Q + + Sbjct: 259 RWRFITKQLPGNFPNWQQCVPDPTLAKTHLELVPDNLQAVAQVIQSMPCHDPKHQTIGIQ 318 Query: 290 LSSDKL-CMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + ++ +T P + S+ + + I + +YL + + Sbjct: 319 WNGKEVALLTKQEPTDPWSRISIPDAKGTGPDVTIFCDRRYLSKAL--------EYGLTT 370 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 L S + + + ++MP+R Sbjct: 371 IGLIDEISPLRL------------YRGGRQMIIMPVR 395 >gi|15828473|ref|NP_325833.1| DNA polymerase III, beta chain [Mycoplasma pulmonis UAB CTIP] gi|18202668|sp|Q98RK6|DPO3B_MYCPU RecName: Full=DNA polymerase III subunit beta gi|14089415|emb|CAC13175.1| DNA POLYMERASE III, BETA CHAIN [Mycoplasma pulmonis] Length = 373 Score = 104 bits (261), Expect = 2e-20, Method: Composition-based stats. Identities = 65/350 (18%), Positives = 137/350 (39%), Gaps = 22/350 (6%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---- 56 MK+ +E+S L L + +IIE N+ Q + + +S +I I Sbjct: 1 MKLFLEKSRFLRFLENTTKIIESNNSNYELRGAYFQVRQDKIILISSNEDISIKNEYLLD 60 Query: 57 -IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 I + V LL +I++K D + K + I ++ + Sbjct: 61 GIKNKTEGESDFLVLNSLLKNIIKKCSDSIILEKEK-----NTLKIFSDLQSYEINLLDH 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 FP K +L + K ++ FA + L +++ ++ L VA Sbjct: 116 ERFPDIKFGLNNSQLQLKTEQFKQALKNVVFAADLSNAQELLL-NSVNLSLKNNILTLVA 174 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 T+ R+A I + ++ ++ + K V E++ + S ++ +S + + +L Sbjct: 175 TNRARIA--MQKIKTEDSQEFNLTINSKVVKELISLSMSN--TLILSPGTFELKIKSGNL 230 Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDK 294 + ++I+ + N +NV P + + ++ L +D+VSI++ + + + + K Sbjct: 231 EIKTKVIEIPYMNVENVFPNKFNFVIHIDKKELLSLIDKVSIVNDEKNGNKILIEYNPSK 290 Query: 295 LCMTVDN----PDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISS 338 + PD+G + + + E + + F N YL E I+ Sbjct: 291 KEKKLKLSSYWPDLGFSEVFSDNFEVESEILLKFFINANYLKESINVFDG 340 >gi|170596510|ref|XP_001902790.1| DNA polymerase III, beta subunit [Brugia malayi] gi|158589311|gb|EDP28360.1| DNA polymerase III, beta subunit, putative [Brugia malayi] Length = 190 Score = 104 bits (259), Expect = 3e-20, Method: Composition-based stats. Identities = 28/104 (26%), Positives = 55/104 (52%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R+ +L L ++ER+N I + + ++A G +++ A+ +I I ++ A Sbjct: 21 MRFSIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 80 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG 104 V G + VSAH L+DIV+KL ++F + ++S Sbjct: 81 VSTEGEVKVSAHTLHDIVKKLPADLDVNFEVNEFANSVTSLSSE 124 >gi|71894027|ref|YP_278135.1| DNA polymerase III beta subunit [Mycoplasma synoviae 53] gi|71850815|gb|AAZ43424.1| DNA polymerase III beta subunit [Mycoplasma synoviae 53] Length = 377 Score = 101 bits (253), Expect = 2e-19, Method: Composition-based stats. Identities = 64/378 (16%), Positives = 153/378 (40%), Gaps = 19/378 (5%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI--EITGAIP 58 M + + I E++ + ++ + ++ N L + A+ I +I + Sbjct: 1 MLFHINKKKIEEIIHTLINYTDSSDSFDSNKCFYIKINSDFLHVIANSNSIAAQIKTKVD 60 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 + ++ G I ++A +L D+V KL+ I E + I S F L Sbjct: 61 ENKIRLEKKGEILINALMLKDVVSKLEGFITI-----QEKNNSILIYDVYSKFELSKKQT 115 Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH---FAMATEEIRYYLNGIFFHINEEDLKLC 172 F + +++ F + S LKN+++ A L I +E+ K+ Sbjct: 116 ESFRKVEFDQHNNVFSVESKELKNVIKNASVSPSAANENTTDRRLKYINIKGKKEENKIV 175 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 +T+ R + + +V K++ ++ + S + + ++E RI + Sbjct: 176 LYSTNFSRFST--DSLNVDNVNEFDFLVDAKSLKKL--LPQSAPKDINLFINEDRIGVFY 231 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + + + +R+ ++ N ++ S E+ + + + +V +SS + + + Sbjct: 232 DDIKIFLRVAKEKYLNVDSLFKLSKYTEVLIEKSEFLSLIQKVYFLSSEQKKIYIELNNE 291 Query: 293 DKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351 +++ + + ++GK+ S ++ N + + FNY YL + + ++ + +V + V D Sbjct: 292 NQMKLNYEVSEIGKSETISSSLTVNGPKVKVAFNYVYLHDALQTLN-EGLVSAKFVLSND 350 Query: 352 SSNSSVFIRGKDKDSKNN 369 N I K ++ +N Sbjct: 351 DENKCTRIILKSTENDSN 368 >gi|262316900|emb|CBA18128.1| putative beta subunit of DNA polymerase III [Paenibacillus phage phiBP] Length = 164 Score = 100 bits (250), Expect = 3e-19, Method: Composition-based stats. Identities = 26/174 (14%), Positives = 65/174 (37%), Gaps = 23/174 (13%) Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAV 272 S D V + + E + R+++G +P+ Q + ++ VN L ++ Sbjct: 7 SDDGQVVYAFA------RTERFTFYSRVLEGVYPDTQRMSAVPEGTTKVEVNKRELLDSI 60 Query: 273 DRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLL 330 + + ++ + ++L ++ ++ + GKA ES+ + + I N KY + Sbjct: 61 ELIYTLAKEEKSNMIRLDIAEKEVSIRGKGKQTGKASESIVPINFTGQDFTISLNAKYAM 120 Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + + + V +F + + +V++P R Sbjct: 121 DALKALDG-----ERVTLIFSGKMQPIFFLSGEDKQ---------SIHVVLPYR 160 >gi|300865072|ref|ZP_07109898.1| hypothetical protein OSCI_1460024 [Oscillatoria sp. PCC 6506] gi|300336936|emb|CBN55048.1| hypothetical protein OSCI_1460024 [Oscillatoria sp. PCC 6506] Length = 246 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 20/174 (11%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIPA 59 K+ + ++ L + + K T PV +VLL A +++ + I + A Sbjct: 65 KLICTQDNLANHLELVSKAVPAKPTHPVLGNVLLVACKKTQRVQLTVFDMRLAIQTSFEA 124 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE------------------NELGTEVNI 101 +V G +T+ LL DIV K G +E + Sbjct: 125 NVQSPGDMTIPVGLLSDIVGKFSPGDITLVSREALKQEGEDSQNSTTLPEAVNNSPVATL 184 Query: 102 SHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155 + ++ EFP+ E + + + LK ++ + FA AT+E +Y Sbjct: 185 IAACGRYQVRGISSEEFPAIPEVKTAQTIRIPPETLKEGLKGSLFATATDETKY 238 >gi|323939236|gb|EGB35449.1| DNA polymerase III beta subunit protein [Escherichia coli E482] Length = 72 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60 Query: 60 SVDVCGSITVSA 71 G+ TV A Sbjct: 61 QPHEPGATTVPA 72 >gi|170581927|ref|XP_001895901.1| DNA polymerase III, beta subunit [Brugia malayi] gi|158597001|gb|EDP35242.1| DNA polymerase III, beta subunit, putative [Brugia malayi] Length = 99 Score = 100 bits (250), Expect = 4e-19, Method: Composition-based stats. Identities = 27/90 (30%), Positives = 51/90 (56%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ ++ R+ +L L ++ER+N I + + ++A G +++ A+ +I I ++ A Sbjct: 1 MRFSIGRTXLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF 90 V G + VSAH L+DIV+KL ++F Sbjct: 61 VSTEGEVKVSAHTLHDIVKKLPADLNVNFE 90 >gi|171910402|ref|ZP_02925872.1| hypothetical protein VspiD_04500 [Verrucomicrobium spinosum DSM 4136] Length = 495 Score = 99 bits (248), Expect = 7e-19, Method: Composition-based stats. Identities = 59/393 (15%), Positives = 136/393 (34%), Gaps = 41/393 (10%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPASVD-VCG 65 +++ L +II + + PV + ++ DG + + A+ + +T + Sbjct: 21 AELKPALSGFSKIISKNSPQPVLQCLKIERTQDGWICLTATDLDRFVTLRLEQPAKGEPV 80 Query: 66 SITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 S+ V L +V+ ++ N + +++ ++ P EFP + Sbjct: 81 SLLVHFDNLQKVVKTCDKSQRVYLEAGPNNNHSIKFDLAGQLGETKSKAPPVEEFPEIPK 140 Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183 + + ++ L++ +T++ RY LNG+ +++ V TDG L Sbjct: 141 IKGE-PIPVPENMRLALIDAMA-CTSTDQNRYVLNGVCVDVSDPQAHY-VVGTDGRHLFS 197 Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-----SSVKVSLSESRIHLNIESLSMS 238 ++ S+++P + S V + SE + + Sbjct: 198 CN---SLKLPLKKSLVIPCHKFLGWREFNLDGEWKMKVSDVSDANSEVLVQFSSRRWRFI 254 Query: 239 VRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIM--SSVRIQAVKLSLSSDK 294 RLI +PN+Q +P L+VN N++ V + M + Q + + + Sbjct: 255 SRLIKDNYPNWQVCVPDPVEAKTHLQVNADNIQNVVQTIQRMPCHDPKYQTMGIQWKDGQ 314 Query: 295 LCMTV--DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + ++ + I + + +Y ++ + E D + Sbjct: 315 MALLAKQESNEPWSRIVIPESKGTGSEVTYFCDRRYFVKAL------EYGLD--TMGIVD 366 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S + + V+MP+R+ Sbjct: 367 PMSPLRF------------FRSGRQLVIMPVRL 387 >gi|134034795|gb|ABO45720.1| DNA polymerase III beta subunit [Microcystis botrys N-C 161/1] gi|134034805|gb|ABO45727.1| DNA polymerase III beta subunit [Microcystis botrys N-C 264] Length = 111 Score = 99.5 bits (247), Expect = 8e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 16/123 (13%) Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 L + ++ V+++S + VK SL +D+L + V++PD+G A ESM DI Sbjct: 1 RKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDI 60 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 FN KYL++ + + +++ + +L++S V + Y++MP Sbjct: 61 AFNVKYLMDGLKALPNND-----IQMKLNASTQPVIFTP---------LGGLKMTYLVMP 106 Query: 383 MRI 385 ++I Sbjct: 107 VQI 109 >gi|134034783|gb|ABO45712.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 31] gi|134034786|gb|ABO45714.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 57] gi|134034792|gb|ABO45718.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 143] gi|134034798|gb|ABO45722.1| DNA polymerase III beta subunit [Microcystis viridis N-C 169/7] gi|134034801|gb|ABO45724.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 228/1] gi|134034808|gb|ABO45729.1| DNA polymerase III beta subunit [Microcystis sp. N-C 324/1] gi|134034892|gb|ABO45776.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 123/1] gi|134034895|gb|ABO45778.1| DNA polymerase III beta subunit [Microcystis cf. flos-aquae N-C 144] gi|134034898|gb|ABO45780.1| DNA polymerase III beta subunit [Microcystis cf. ichthyoblabe N-C 279] Length = 111 Score = 99.2 bits (246), Expect = 9e-19, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 16/123 (13%) Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 L + ++ V+++S + VK SL +D+L + V++PD+G A ESM DI Sbjct: 1 RKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDI 60 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 FN KYL++ + + +++ + +L++S V + Y++MP Sbjct: 61 AFNVKYLMDGLKALPNND-----IQMQLNASTQPVIFTP---------LGGLKMTYLVMP 106 Query: 383 MRI 385 ++I Sbjct: 107 VQI 109 >gi|134034789|gb|ABO45716.1| DNA polymerase III beta subunit [Microcystis sp. N-C 118/2] Length = 111 Score = 98.4 bits (244), Expect = 2e-18, Method: Composition-based stats. Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 16/123 (13%) Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322 L + ++ V+++S + VK SL +D+L + V++PD+G A ESM DI Sbjct: 1 RKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAATIQGESGDI 60 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 FN KYL++ + + +++ + +L++S V + Y++MP Sbjct: 61 AFNVKYLMDGLKALPNND-----IQMQLNASTQPVIFTP---------LGGLKMTYLVMP 106 Query: 383 MRI 385 ++I Sbjct: 107 VQI 109 >gi|1079500|gb|AAC43712.1| DnaN protein [Mycobacterium smegmatis] gi|1585268|prf||2124373C DNA polymerase III beta Length = 262 Score = 98.0 bits (243), Expect = 2e-18, Method: Composition-based stats. Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 30/266 (11%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN---DGLLEIKASGPEIEITGAIP 58 K V R D + + R + T P S A D L I E+ + Sbjct: 12 KFRVVREDFADAVAWVARSLP---TGPPSGCWQASAEPAPDEGLTISGFDYEVSAEVKVS 68 Query: 59 ASV----DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114 A + V G T + R+ G + + +L ++ L Sbjct: 69 AEIASAGSVSGVRTAAVRHHQGAARQACRGQRRGHPRVPDLRQRALLAADARGRGLPGAA 128 Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174 + ++ + + A ++ L GI I+ E + L Sbjct: 129 CAARGD---------RCDPVGSVRRAIGQVAVAAGRDDTLPMLTGIRVEISGESVVL--A 177 Query: 175 ATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ES 226 ATD RLAV E+ V +++VP K + E + + + V ++L + Sbjct: 178 ATDRFRLAVRELTWVTTAGDVEAAVLVPAKTLAEAAKAGTDGN-QVHLALGSGASVGKDG 236 Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNV 252 + + E + RL+D EFP ++ + Sbjct: 237 LLGIRSEGKRSTTRLLDAEFPKFRQL 262 >gi|207091961|ref|ZP_03239748.1| DNA polymerase III subunit beta [Helicobacter pylori HPKX_438_AG0C1] Length = 146 Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59 MKI+V ++D+ L + +++K+ ++ H+ L+ L +KAS +I + I Sbjct: 1 MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 S D G T++ DI+ L+D I K++ + I S+F L F EFP Sbjct: 61 SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAM 148 E S E+ + L + ++ + Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVI 145 >gi|86740415|ref|YP_480815.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3] gi|86567277|gb|ABD11086.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3] Length = 408 Score = 97.6 bits (242), Expect = 3e-18, Method: Composition-based stats. Identities = 61/399 (15%), Positives = 140/399 (35%), Gaps = 38/399 (9%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPASVDVCGSI 67 D+L L +++RK+ P L+ A+ DG L + + P ++ +P + G Sbjct: 21 DLLAALTTVGTVLDRKSRPP-WNAALITADLDGRLTVTGASPAATVSVRLPGAARSAGQF 79 Query: 68 TVSAHLLYDIVRKL------QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 V L + + L +D ++ + ++ GD L P + P Sbjct: 80 LVDGWALTQMCKALVRGEHRRDTDELPVLLDGSFPPAPTVTIGDYTVPLTGLPVEDHPGA 139 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + + + V+R A+ ++ L G++ + TD +RL Sbjct: 140 CRPAPTIA-TVDRAAWRAAVDRVLPAVGRDDTLRVLTGLYVSFAPGLATV--AGTDRYRL 196 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES-----RIHLNIESLS 236 AV + + +++P K + + ++ +ES R+ + Sbjct: 197 AVDVLPATVTGPAVQELLLPAKILAACAETWTGPSVTIGRRRAESVHDVDRVTFTCGQTT 256 Query: 237 MSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQ-----AVKLS 289 +S+ G +P ++ ++ + + V RV +I+++ + L+ Sbjct: 257 VSLVETGGAYPPWRRLLGSLDPQHTATFDRATVAAHVARVLAILTAHPTTRRPIMTMTLT 316 Query: 290 LSSDKLCMTVDNPDMGK--AIESMNVYYNECPMDI--CFNYKYLLEIIDNISSDEVVDDE 345 L+ D L + P+ G + ++ + + FN + + D Sbjct: 317 LTPDGLRVAPLLPEHGARVSAPTLPATTSLTDGTVRWAFNA-----AYLRAALAALPGDT 371 Query: 346 VVFR-LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V+F V + ++ + ++LMP+ Sbjct: 372 VLFSGQADVAKPVLLTSPEQGASIPP-----YRHLLMPI 405 >gi|313112551|ref|ZP_07798215.1| DNA polymerase III beta subunit protein [Faecalibacterium cf. prausnitzii KLE1255] gi|310625133|gb|EFQ08424.1| DNA polymerase III beta subunit protein [Faecalibacterium cf. prausnitzii KLE1255] Length = 125 Score = 97.2 bits (241), Expect = 4e-18, Method: Composition-based stats. Identities = 23/136 (16%), Positives = 63/136 (46%), Gaps = 16/136 (11%) Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTVDNPDMGKAI 308 +NVIP + + ++ + ++R S++ + R +++S + ++ + ++G+ + Sbjct: 1 RNVIPADSRTRVTIDTKEFIETIERASLIITERLKNPLRISFTEGRVVVRCQ-TNLGRVV 59 Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368 + N ++I FN +YLL+ + N +++ V + S V + + + Sbjct: 60 DEFNADCEGDEVEIGFNNRYLLDALRNARTEK-----VRMEISGPLSPVKVLPAEGN--- 111 Query: 369 NKDNKVNAFYVLMPMR 384 + Y+++P+R Sbjct: 112 ------DFLYLVLPVR 121 >gi|290958477|ref|YP_003489659.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22] gi|260648003|emb|CBG71110.1| putative DNA polymerase III beta chain [Streptomyces scabiei 87.22] Length = 369 Score = 96.8 bits (240), Expect = 5e-18, Method: Composition-based stats. Identities = 51/280 (18%), Positives = 103/280 (36%), Gaps = 60/280 (21%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 +A+ L ++ FA++T+ L G+ F I +L+ VATD +R+AVA Sbjct: 127 SVRLSVAAPELAAALDTVRFAVSTDPGLPMLGGVLFDIEGGNLR--TVATDRYRMAVARA 184 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 I +VP + + +R LS + ++++ R+ L+ + + +D +F Sbjct: 185 GITGHDEGRVQAVVPT-PLVDAMRALSVGGGTARLAVDGDRVTLDAGDGQAAGQCLDHDF 243 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306 P+Y+ ++P + V+ R+A++ V+ G+ Sbjct: 244 PDYRRLLPADGGRRALVDVAAFREALE---------TGPVR----------------SGE 278 Query: 307 AIESMNVYYNECPMDICF---------------------NYKYLLEIIDNISSDEVVDDE 345 A ++V E + N + + + D Sbjct: 279 AGADLSVLRVEDDGTVALCSDSDSDSDGDGAGAAHRVGVNRGF--LLDALDALAAGTWDR 336 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + + + + IR D + AF VLMP+R+ Sbjct: 337 LALEVSAPTAPIAIRRPDDE---------GAFSVLMPVRL 367 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 6/121 (4%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 +++V ++ L + +P+ VL G L A+ + Sbjct: 129 RLSVAAPELAAALDTVRFAVSTDPGLPMLGGVLFDIEGGNLRTVATDRYRMAVARAGITG 188 Query: 62 DVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 G + V L D +R L G + + G V + GD Q + +FP Sbjct: 189 HDEGRVQAVVPTP-LVDAMRALSVGGGTARLAVD--GDRVTLDAGDGQAAGQCL-DHDFP 244 Query: 120 S 120 Sbjct: 245 D 245 >gi|167933105|ref|ZP_02520192.1| DNA polymerase III, beta subunit [candidate division TM7 single-cell isolate TM7b] Length = 119 Score = 96.1 bits (238), Expect = 8e-18, Method: Composition-based stats. Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+++V + + + L +A RI + +P+ ++LL+ + L + A E+ I Sbjct: 1 MELSVLQENFTKALNNASRIATSRTQLPILNNILLRTDGNRLLVAAMNMEVATMHYIGTK 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 + GSITV A L+ + V L + G + I G + + +FP Sbjct: 61 IIKPGSITVPARLITEFVSSLPKEKIDLKVE----GEHLIIKAGKYSSVINGIAADDFPE 116 Query: 121 TKE 123 Sbjct: 117 LPA 119 >gi|111019151|ref|YP_702123.1| DNA polymerase III, beta chain [Rhodococcus jostii RHA1] gi|110818681|gb|ABG93965.1| probable DNA polymerase III, beta chain [Rhodococcus jostii RHA1] Length = 317 Score = 94.1 bits (233), Expect = 4e-17, Method: Composition-based stats. Identities = 52/259 (20%), Positives = 107/259 (41%), Gaps = 32/259 (12%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 + L ++ L FA L G + + L+L V TD +RLAV Sbjct: 85 ECTVVLRTTDLLTAFGSVRFAADPHSDFPVLRGCLLETDHDVLRL--VTTDRYRLAVGTA 142 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 ++ + + S +VP + + +L D +V V + I L + RL+DG F Sbjct: 143 TLLEPLDEPISAVVPCTFLDDAAGLLRRHD-TVTVVVGADSITLRCGGEQLGTRLVDGAF 201 Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL-SLSSDKLCMTVDNPDMG 305 P+++++ P E + +LR ++++ + V L L S ++ + G Sbjct: 202 PDHRSLSPLDRGIEYTFSSADLR------ALLADAGDR-VDLGVLESGEIVV-------G 247 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 + V + + N +LLE +D + +++ F++ + + IR + Sbjct: 248 RQGTEQPVLFQ-----VQVNAGFLLEAVDALPG-----EQLTFQVGEPITPLAIRPR--- 294 Query: 366 SKNNKDNKVNAFYVLMPMR 384 + + +A+ +LMP++ Sbjct: 295 -SIHTSDPASAYSLLMPLQ 312 >gi|57234984|ref|YP_180909.1| DNA polymerase domain-containing protein [Dehalococcoides ethenogenes 195] gi|57225432|gb|AAW40489.1| DNA polymerase domain protein [Dehalococcoides ethenogenes 195] Length = 425 Score = 93.4 bits (231), Expect = 6e-17, Method: Composition-based stats. Identities = 37/252 (14%), Positives = 93/252 (36%), Gaps = 32/252 (12%) Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 +E+ +++ R L G+ F + KL V+ DG+RLA+ +D + + Sbjct: 122 EALEQVLTFTSSQSSRPVLQGVCFKAA--NGKLDLVSADGYRLAIVTLDYQGE----GTA 175 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSE-----SRIHLNIESLSMSVRLIDGEFPNYQNVI 253 ++ R + + + L ++ + + L E + + G++P+Y +I Sbjct: 176 VIHRDELKGVAQALRRARRVRLAFETDEATKRTYLVLETELIRYRWSGMSGDYPDYHPLI 235 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313 P + + T +A+ + +++ V+ V L++ K+ ++ + K + ++ Sbjct: 236 PTGFKTAVSLESTETLRAIASLKVLTDVKGCPVDLAIGDGKVVISATDD---KGVTELSA 292 Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373 P+ + + + + + V + + + Sbjct: 293 ETAGEPVRLRLDGGFFTDALKACGGI------VELNITEPSLPTLFKAD----------- 335 Query: 374 VNAFYVLMPMRI 385 V+MPM I Sbjct: 336 -GFQLVVMPMAI 346 >gi|213692129|ref|YP_002322715.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|213523590|gb|ACJ52337.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp. infantis ATCC 15697] gi|320458246|dbj|BAJ68867.1| hypothetical protein BLIJ_1280 [Bifidobacterium longum subsp. infantis ATCC 15697] Length = 357 Score = 93.0 bits (230), Expect = 8e-17, Method: Composition-based stats. Identities = 61/390 (15%), Positives = 127/390 (32%), Gaps = 44/390 (11%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ V+ + ++ HA R++ER N +V L A D L I A+G G + A+V Sbjct: 3 RVLVDAREFANMVAHAARVLERDNP-----YVALDAADDGLAISAAGDSQWSHGRVDATV 57 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 GS VS L + + G G + + G+++ ++ E + P+ Sbjct: 58 LEAGSAVVSGLWLNALANAMPSGE----IGVETNGGYLTLRGGEASLRMRVGEEKDRPAE 113 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + + L + L + F L AT +R Sbjct: 114 PAAPE-RMVPVDADAYAALCGSVAPEAGGTRDQPVLASVRFVAAGGLL----TATATNRY 168 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 I + V + +++ + ++ + ++ + ++ L Sbjct: 169 MAGRRSIPVGGMPDGEWLADADWVKRNAKGVNA------IGFTDRMMVVDTGGFTDAIVL 222 Query: 242 IDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLSSDKLCMT 298 G++P + P V+ L A + S+ R+ + L L + Sbjct: 223 TAGQYPMVDRLFDKPEEPAGVAVVDRRALMDAARMLKSVCFDSRMGIIPLILDERDGMLR 282 Query: 299 VDNPDMGKAIES-----MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 V G+ +S + +++ N YLL ++ + +D V + Sbjct: 283 VRYAGDGQDADSQGVRLLEADITG-DVNVKLNADYLLTVLAGMDADRVSVVKTR-----E 336 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 V D + ++MP+ Sbjct: 337 MKPVLFEQDDSAVEQ----------LVMPV 356 >gi|291164800|gb|ADD80830.1| DnaN [Rhodococcus phage ReqiDocB7] Length = 371 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 57/376 (15%), Positives = 146/376 (38%), Gaps = 34/376 (9%) Query: 2 KITVERSDILELLGHACRIIERKNT-IPVSCHVLLQA-----NDGLLEIKASGPEIEITG 55 ++ E + + + L A RI K T I +LL+ G + A+ + Sbjct: 3 EVVFETAALADTLKKAARIAPMKGTEIEKYAGILLEILPDGMGGGQVVAHATNGGVFYKE 62 Query: 56 AI-PASVDVCGSIT-VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113 + P S+ + V + + I+ L G+ + E G ++ I+ G + + Sbjct: 63 WMNPLSIQGEATTWRVPSAVTSGIINALPIGSGKKCTFKLE-GNKIRITSGRTRASV-GL 120 Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173 + E+P ++ +Y + L + +++ +A++ +E + ++ Sbjct: 121 IDREYPEWEDFDYEETSPLNGFGAR--LDQVAWAVSRKES-QATSSVYLDGES------I 171 Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 VATDG++L A + + + S++VP + +L + V + + L Sbjct: 172 VATDGYKLVTAPLALNMEED---SVLVPMAVLAPLLSQMDETRGRV----DGNFLCLAPN 224 Query: 234 SLS-MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLS 291 + + L+ +P V + + N + + V R+ ++++ R + +++ Sbjct: 225 DYTQIKCVLLGENYPPVSKVTSQETENTILANREQMVEIVQRIMTVIAKDRQTDLWVTIG 284 Query: 292 SDKLCMTVDNPDMGKAIE---SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348 ++++ + +I+ + P+ F +Y ++ + + + + Sbjct: 285 NEEISFYTQDEAGVNSIDDALELPGQCIHEPIKFKFTPEY---FVNAVGKAPGILVTINY 341 Query: 349 RLDSSNSSVFIRGKDK 364 +D S+V G+D+ Sbjct: 342 SIDRPLSAVRFEGEDE 357 >gi|213585141|ref|ZP_03366967.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 93 Score = 92.2 bits (228), Expect = 1e-16, Method: Composition-based stats. Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 1/94 (1%) Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + + A + S+IVPRK V E++R+L ++ ++V + + I ++ + +L+DG Sbjct: 1 MPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGR 59 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279 FP+Y+ V+P + DK L C L+QA R +I+S Sbjct: 60 FPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 93 >gi|392772|gb|AAC43045.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15] Length = 96 Score = 91.8 bits (227), Expect = 2e-16, Method: Composition-based stats. Identities = 32/96 (33%), Positives = 59/96 (61%) Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257 +IVPRK + E R++ S +V + +S ++ + +++ ++IDG FP+Y VIP N Sbjct: 1 VIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALTSKVIDGAFPDYMRVIPRDN 60 Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293 K L ++ +AVDRV+ +S+ + ++VKL++ D Sbjct: 61 AKILTLDNDLFAKAVDRVANISAEKSRSVKLAVEPD 96 >gi|322691163|ref|YP_004220733.1| hypothetical protein BLLJ_0974 [Bifidobacterium longum subsp. longum JCM 1217] gi|320456019|dbj|BAJ66641.1| hypothetical protein BLLJ_0974 [Bifidobacterium longum subsp. longum JCM 1217] Length = 344 Score = 91.1 bits (225), Expect = 2e-16, Method: Composition-based stats. Identities = 62/379 (16%), Positives = 123/379 (32%), Gaps = 44/379 (11%) Query: 14 LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73 + HA R++ER N +V L A D L I A+G G + A+V GS VS Sbjct: 2 VAHAARVLERDNP-----YVALDAADDGLAIGAAGDSQWSHGRVDATVLEAGSAVVSGLW 56 Query: 74 LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133 L + + G G + + G+++ ++ E + P+ + Sbjct: 57 LNALANAMPSGE----IGVEADGVYLTLRGGEASLRMRVGDEGDRPAEPAAPE-RMVPVD 111 Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 + L + L + F L AT +R I Sbjct: 112 ADAYAALCGSVAPEAGGTRDQPVLASVRFVAAGGLL----TATATNRYMAGRRSIPVGGV 167 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 + V + +++ + ++ + ++ + ++ L G++P + Sbjct: 168 PDGEWLADADWVKRNAKGVNA------IGFTDRMMVVDTGGFTDAIMLTAGQYPMVDRLF 221 Query: 254 --PCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310 P V+ L A + S+ R+ + L L + V G+ +S Sbjct: 222 DRPGDPAGVAVVDRRALMDAARMLKSVCFDSRMGIIPLILDERDGMLRVRYAGDGQDADS 281 Query: 311 -----MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 + +D+ N YLL ++ + +D V + V D Sbjct: 282 QGVRLLEADITG-DVDVKLNADYLLTVLAGMDADRVSVVKTR-----EMKPVLFEQDDSA 335 Query: 366 SKNNKDNKVNAFYVLMPMR 384 + +++MP+R Sbjct: 336 VE----------HLVMPVR 344 >gi|330861744|emb|CBX71918.1| hypothetical protein YEW_AJ01850 [Yersinia enterocolitica W22703] Length = 82 Score = 90.7 bits (224), Expect = 4e-16, Method: Composition-based stats. Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 14/96 (14%) Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349 +S ++L +T +NP+ +A E ++V Y+ M+I FN Y+L++++ + ++V Sbjct: 1 MSQNQLKITANNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLL 55 Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L S SSV I A YV+MPMR+ Sbjct: 56 LTDSVSSVQIED---------GASQAAAYVVMPMRL 82 >gi|302869183|ref|YP_003837820.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC 27029] gi|302572042|gb|ADL48244.1| DNA polymerase III beta chain [Micromonospora aurantiaca ATCC 27029] Length = 378 Score = 89.9 bits (222), Expect = 5e-16, Method: Composition-based stats. Identities = 59/280 (21%), Positives = 112/280 (40%), Gaps = 34/280 (12%) Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 +E L+ + L V+ FA+ + L+G+ + + ++L VATD HRL Sbjct: 117 EEITVTTRLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRL 174 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVR 240 AVA V S ++P AV E+ +L + +V ++ R+ + + ++ Sbjct: 175 AVARVGGTVDGP-PVSALLPVAAVDELRALLDLDGADTAEVVVATDRVTVTVAGRPLTAV 233 Query: 241 LIDGEFPNYQNVIPCS----NDKELRVNCTNLRQAV--DRVSIMSS----VRIQAVKLSL 290 + +FP+Y+ ++ + + LR A+ D V + V + V L L Sbjct: 234 PLPYDFPDYRRLLRAQLGDVPTYRIPFDGAALRAALTADGVPVCHRAHEGVEHEVVALGL 293 Query: 291 SS-DKLCMTVDNPDMGKAIESMNVYYNE----CPMDICFNYKYLLEIIDNISSDEVVDDE 345 +L + N + + + N +YLL+ + + D + Sbjct: 294 DGRGELRLVDPNGVVAAGGVEGGAGAAGAGGPDALRVAVNREYLLDALGS------GDGQ 347 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +V LD + + +R D +AF VLMP+R+ Sbjct: 348 LVLELDGPIAPLAVRRADD---------AHAFSVLMPVRL 378 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG 48 ++ + R+D+ + + +PV VL++ + + A+ Sbjct: 124 RLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRLVATD 170 >gi|65319986|ref|ZP_00392945.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog) [Bacillus anthracis str. A2012] Length = 126 Score = 89.9 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ V + L + I K IP+ + + A+ + + AS I I IP++ Sbjct: 1 MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60 Query: 61 VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE 98 +D G+I V A +I++K+ I E Sbjct: 61 IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQTXTII 106 >gi|196230263|ref|ZP_03129126.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428] gi|196225860|gb|EDY20367.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428] Length = 97 Score = 89.9 bits (222), Expect = 7e-16, Method: Composition-based stats. Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%) Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337 +SS + +VKL + + + + + PD+G+A ES+ V Y I FN ++L + + Sbjct: 5 LSSEKSNSVKLVFTKNNIEIAANTPDVGEARESLAVAYKGREFSIAFNPEFLQAPLRVL- 63 Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +DEV + S I+ + YVLMPMRI Sbjct: 64 ----TNDEVYLDMIDEMSPGVIKIQSP-----------FLYVLMPMRI 96 >gi|325972869|ref|YP_004249933.1| DNA polymerase III subunit beta [Mycoplasma suis str. Illinois] gi|325989362|ref|YP_004249061.1| dna polymerase III, beta chain protein [Mycoplasma suis KI3806] gi|323574447|emb|CBZ40097.1| dna polymerase III, beta chain protein [Mycoplasma suis] gi|323651471|gb|ADX97553.1| DNA polymerase III, beta subunit [Mycoplasma suis str. Illinois] Length = 388 Score = 89.5 bits (221), Expect = 8e-16, Method: Composition-based stats. Identities = 54/369 (14%), Positives = 132/369 (35%), Gaps = 32/369 (8%) Query: 33 VLLQANDGLLEIKASGPEIEITGAI---PASVDVCGSITVSAHLLYDIVRKLQDGAQISF 89 +L++ L A+ E G +SA +L ++ L++ +I F Sbjct: 33 ILIKCKKEELLFYANNGFTECKLTFKSSEIKYKKQGECVISAKILLTLLENLKNCEEIGF 92 Query: 90 FKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELA-----SSVLKNLV 141 K + IS L + + +E+ +F+ +S K+ Sbjct: 93 KKIE--NALLQISSDKFECNLICLTKKLLIKDIQIEEDMKKLTFDFDFLNLINSKFKDFY 150 Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIV 200 + + + I F + ++ + +D R+ A + + + Sbjct: 151 RSSSSQPQKIQKNSVFSTINFRKKIDSEEINIILSDSSRILKANFALKELEEVNFFEFNL 210 Query: 201 PRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 P + + I+ + S K++ + + +N E+L +L G +P+ + Sbjct: 211 PVEILNSIISLFRENHDSKKINFYLKNNSLLINSENLIFKTQLYSGTYPDLLKMFSAQEK 270 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN-- 316 VN + L A++R ++S + + + L + + G E + + N Sbjct: 271 INFSVNKSTLISALERNLLLSEKNLSFACYKIFDNNLTLEYRDSSKGYLREEIEIQNNKG 330 Query: 317 -ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 E ++ N +L +++ I D E++F + + + + G+++ N Sbjct: 331 KEKFIEFSLNSLFLKQLLKGIP-----DSEIIFSISETFKPIILFGEEE--------GKN 377 Query: 376 AFYVLMPMR 384 +++P++ Sbjct: 378 FKQLILPLK 386 >gi|213581832|ref|ZP_03363658.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-0664] Length = 79 Score = 89.5 bits (221), Expect = 9e-16, Method: Composition-based stats. Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 14/93 (15%) Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 ++L +T +NP+ +A E ++V Y M+I FN Y+L++++ + + V L Sbjct: 1 NQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTD 55 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 S SSV I +A YV+MPMR+ Sbjct: 56 SVSSVQIEDA---------ASQSAAYVVMPMRL 79 >gi|321309520|ref|YP_004191849.1| DNA polymerase III subunit beta [Mycoplasma haemofelis str. Langford 1] gi|319801364|emb|CBY92010.1| DNA polymerase III beta subunit [Mycoplasma haemofelis str. Langford 1] Length = 376 Score = 88.8 bits (219), Expect = 1e-15, Method: Composition-based stats. Identities = 59/362 (16%), Positives = 134/362 (37%), Gaps = 24/362 (6%) Query: 31 CHVLLQANDGLLEIKASG----PEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86 +V ++ ++ + + ++EI + GS +++ L ++ KL+ Sbjct: 29 DNVHIKCSNNEVILIICNENYFFKLEIKKDEDLKIKKTGSFSLNIKLFNSLLEKLKPSNN 88 Query: 87 ISFFKENELGTEVNISHGDSNFYLQSFPES-EFPSTKEEEYVYSFELASSVLKNLVERTH 145 + FK + + GD L E P E ++ S+LK + Sbjct: 89 LEIFKSEDNNIQFF--SGDFECNLIFLEEKVNNPEKINLEEKDKISISYSILKLTYSKLK 146 Query: 146 FAMATEEIRYY--LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203 ++ L I L ++D +R + +I P Sbjct: 147 NFCKNQDSSQNTLLKCIHLRKLNNSEILEVWSSDNYRTVFGQFKFKCDREFEINIS-PSI 205 Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 + L + +++ +++ + L M V++ G FP + +N+KE V Sbjct: 206 INTLLFLFLEYSEEDLEIWINDDDFFCKKDDLIMKVKIERGNFPELSHWFNTNNNKEFLV 265 Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDI 322 + ++L A++R ++S+ IQ L ++KL + + + G E + + + + +D Sbjct: 266 SKSDLLSAIERNLLLSNKVIQTTFYRLENEKLWIEYKDSEKGFCKEFIKIKKFTDGDIDF 325 Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382 N L +I NI S + ++F + S + + ++ + ++P Sbjct: 326 SLNNNLLKPLIKNIDS-----ENIIFSISDSFKPIVLLSSNESEIFKQF--------ILP 372 Query: 383 MR 384 +R Sbjct: 373 IR 374 >gi|402336|gb|AAA02816.1| dnaN protein [Salmonella enterica subsp. enterica serovar Typhimurium] Length = 62 Score = 88.4 bits (218), Expect = 2e-15, Method: Composition-based stats. Identities = 19/60 (31%), Positives = 32/60 (53%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK TVER +L+ L + + T+P+ ++LLQ DG L + + E+E+ + S Sbjct: 1 MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVTLS 60 >gi|29566368|ref|NP_817935.1| gp84 [Mycobacterium phage Corndog] gi|29425093|gb|AAN02016.1| gp84 [Mycobacterium phage Corndog] Length = 392 Score = 87.2 bits (215), Expect = 4e-15, Method: Composition-based stats. Identities = 57/392 (14%), Positives = 141/392 (35%), Gaps = 58/392 (14%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 ++ V + + ++ P S + + A G L ++ + ++ IP Sbjct: 49 ELKVRDDALTPEVAWLAKMSTG--AAPASALIRVTALVGALVLRRTNMDLFQESVIPVEG 106 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121 ++ V A L ++ + G + ++E + I D+ +++ E+P Sbjct: 107 AAQATVLVEAGKLLAGLKSV-SGMLVLTVNDDE----LIIKSSDATVKVRAANV-EYPIW 160 Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 E E + + + + + T+E + F + V TD RL Sbjct: 161 PEFESTADQAIIGTSQ---LTQVLTSAGTDEALPQFMVVSFDAGQ------MVTTDRFRL 211 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS---LSESR-IHLNIESLSM 237 + + P A+ + +S V V + ++ I L+ ++ Sbjct: 212 SRINY-----GPSEFRAVAPTAAL----KAMSKSQGVVYVEPGKVGDADWIELSSAGRTV 262 Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + + +Q++IP ++ ++ +L A V +S++ D + + Sbjct: 263 LAPMPQQDLFKWQHLIPKDPPVQVALSRRDLLDA---------AGGDEVTISVAPDAIKV 313 Query: 298 TVDNP--DMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 T + ++ + ++ +++ +E P+ + KYL E + I + ++ + Sbjct: 314 TSHSEGVEVERTLKPLSIIKHELDGPLVVRMRSKYLNEALRGIDT-----GTLLMAGSAG 368 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N V + D + +++MP+RI Sbjct: 369 NRPVVFQ----------DVSESDLHLIMPVRI 390 >gi|416236|dbj|BAA03628.1| DNA polymerase III beta subunit [Mycoplasma capricolum subsp. capricolum ATCC 27343] Length = 165 Score = 86.4 bits (213), Expect = 7e-15, Method: Composition-based stats. Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 8/157 (5%) Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271 L ++K+ + E I I+++ LIDG+FPN Q P + + V ++ + Sbjct: 1 LLDNAENLKIIIVEGYITFIIDNVIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKV 60 Query: 272 VDRVSIMSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKY 328 + R +++ + A V + ++ DK+ ++GK E + V + I FN ++ Sbjct: 61 LSRFDLVADDGLPAIVNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRF 120 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 L++ I +S +D + +L +S + I + Sbjct: 121 LIDAIKTLS-----EDRIELKLINSTKPIVINNVYDE 152 >gi|284034688|ref|YP_003384619.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836] gi|283813981|gb|ADB35820.1| DNA polymerase III beta chain [Kribbella flavida DSM 17836] Length = 366 Score = 86.1 bits (212), Expect = 1e-14, Method: Composition-based stats. Identities = 46/272 (16%), Positives = 110/272 (40%), Gaps = 46/272 (16%) Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189 L L + + + + A + L + + E+++ L VATD +RLAV ++ Sbjct: 121 VTLGGPELASAIRQVTPSAAEGDELPVLACVRIELAEDEVTL--VATDRYRLAVRKLHPQ 178 Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN--------IESLSMSVRL 241 A +++V + E+ R ++S SV++ ++ +++ L+ + +++ Sbjct: 179 AFSGTPGAVLVRASELTELTRWVASA-GSVQLDVTPTQVVLSRSEPHGALAGDVR-ELQV 236 Query: 242 IDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299 ++ E+P YQ ++ + V+ L + + +++ LS+ ++ + Sbjct: 237 VEEEYPAYQAILEGLGPPVCRVLVDRLALAELLGAADVVA--------LSIEPSQVTVEG 288 Query: 300 DNPDMGKAIE------SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353 +P A + + + P+ I F + L + V +V+ + + Sbjct: 289 SSP----ASQPSVPGGHLAALVSGEPLRIGFTARLLTAAL-----HTGVGPDVLLEIHAP 339 Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 N V IR D+ + ++MP R+ Sbjct: 340 NRPVVIRSADQGTFTT---------LVMPTRL 362 Score = 41.0 bits (95), Expect = 0.34, Method: Composition-based stats. Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 2/73 (2%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIP-ASVDVCGS 66 ++ + + +PV V ++ + + + A+ + + P A G+ Sbjct: 127 ELASAIRQVTPSAAEGDELPVLACVRIELAEDEVTLVATDRYRLAVRKLHPQAFSGTPGA 186 Query: 67 ITVSAHLLYDIVR 79 + V A L ++ R Sbjct: 187 VLVRASELTELTR 199 >gi|309804110|ref|ZP_07698191.1| DNA polymerase III beta subunit, N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] gi|308163878|gb|EFO66144.1| DNA polymerase III beta subunit, N-terminal domain protein [Lactobacillus iners LactinV 11V1-d] Length = 93 Score = 85.7 bits (211), Expect = 1e-14, Method: Composition-based stats. Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK ++R+ L+ L + + I IP+ + + ++ L + S I I IP S Sbjct: 1 MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60 Query: 61 ----VDVCGSITVSAHLLYDIVRK 80 ++ GSI + A +I++ Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKN 84 >gi|315504340|ref|YP_004083227.1| DNA polymerase iii beta chain [Micromonospora sp. L5] gi|315410959|gb|ADU09076.1| DNA polymerase III beta chain [Micromonospora sp. L5] Length = 384 Score = 85.3 bits (210), Expect = 1e-14, Method: Composition-based stats. Identities = 59/281 (20%), Positives = 111/281 (39%), Gaps = 40/281 (14%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 L+ + L V+ FA+ + L+G+ + + ++L VATD HRLAVA V Sbjct: 122 TTRLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRLAVARV 179 Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 S ++P AV E+ +L S +V ++ R+ + + ++ + + Sbjct: 180 GGTVDGP-PVSALLPVVAVDELRALLDLDGADSAEVVVATDRVTVTVAGRPLTAVPLPYD 238 Query: 246 FPNYQNVIPCS----NDKELRVNCTNLRQAV--DRVSIMSS----VRIQAVKLSLSS-DK 294 FP+Y+ ++ + + LR A+ D V + V + V L L + Sbjct: 239 FPDYRRLLRAQLGDVPTYRIPFDGAALRAALTADGVPVCHRAHEGVEHEVVALGLDGRGE 298 Query: 295 LCMTVDNPDMGKAIESMNVYYNE----------CPMDICFNYKYLLEIIDNISSDEVVDD 344 L + N + + + + N +YLL+ + + D Sbjct: 299 LRLVDPNGVVAAGGVAGVEGVEGGAGAAGAGGPDALRVAVNREYLLDALGS------GDG 352 Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++V LD + + +R D +AF VLMP+R+ Sbjct: 353 QLVLELDGPIAPLAVRRADD---------AHAFSVLMPVRL 384 Score = 46.8 bits (110), Expect = 0.006, Method: Composition-based stats. Identities = 7/47 (14%), Positives = 20/47 (42%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG 48 ++ + R+D+ + + +PV VL++ + + A+ Sbjct: 124 RLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRLVATD 170 >gi|238060457|ref|ZP_04605166.1| MerR family transcriptional regulator [Micromonospora sp. ATCC 39149] gi|237882268|gb|EEP71096.1| MerR family transcriptional regulator [Micromonospora sp. ATCC 39149] Length = 362 Score = 84.5 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 33/273 (12%) Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 +E V L+ + L ++ FA+ + L+G+ F + + ++L VATD HR+ Sbjct: 114 EENPMVTCLVLSRADLAAAIDAVRFAVGADPDLPVLSGVLFDVAADGVRL--VATDRHRM 171 Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVR 240 AV+ V ++ P V +L S ++ L + + +++ + Sbjct: 172 AVSRVPGRVDGP-AQRVLAPVDLVDRARALLDADGGSEARLRLDGAAVTVSVAGREATGP 230 Query: 241 LIDGEFPNYQNVI----PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS----S 292 + EFP+YQ ++ + + V+ LR V +R + V + ++ Sbjct: 231 ALPHEFPDYQRLLGGHAGGTPAYRIPVDVPALRAEVADGPPARVLRHEGVDVPVTVLGLD 290 Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 D + V + V + N +YLL+ +D +++ LD Sbjct: 291 DVGALRVLDSAALADAAPEAVRF-------GVNGRYLLDALDAGD-----RGQLLLELDG 338 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + + +R D +AF +LMP+R+ Sbjct: 339 PIAPLAVRRPDD---------ADAFSILMPIRL 362 Score = 48.7 bits (115), Expect = 0.002, Method: Composition-based stats. Identities = 15/81 (18%), Positives = 28/81 (34%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 + + R+D+ + + +PV VL + + A+ +P VD Sbjct: 122 LVLSRADLAAAIDAVRFAVGADPDLPVLSGVLFDVAADGVRLVATDRHRMAVSRVPGRVD 181 Query: 63 VCGSITVSAHLLYDIVRKLQD 83 ++ L D R L D Sbjct: 182 GPAQRVLAPVDLVDRARALLD 202 >gi|226361288|ref|YP_002779066.1| MerR family transcriptional regulator [Rhodococcus opacus B4] gi|226239773|dbj|BAH50121.1| putative MerR family transcriptional regulator [Rhodococcus opacus B4] Length = 345 Score = 84.5 bits (208), Expect = 3e-14, Method: Composition-based stats. Identities = 45/249 (18%), Positives = 98/249 (39%), Gaps = 38/249 (15%) Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 V FA + L G F + + L+L V TD +RLAV ++ + S + Sbjct: 126 AVSAVRFAADADSDFPVLRGCLFETDHDVLRL--VTTDRYRLAVGTAAVLEPPDRPISAV 183 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 VP + + +L + +V V + + L ++ ++ L+ G FP+++ + P Sbjct: 184 VPCTFLDDAAGLLR-RHRTVTVCVGADSVTLRCDTEQLTTGLVHGAFPDHRALSPRDPGI 242 Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319 E + LR ++++ + D + + V + Sbjct: 243 EHTFSSAALR------ALLTDAGDRV-------DLGVLESG---------EIVVGHPGTE 280 Query: 320 MDICF----NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 + F N +LLE +D + +++ FR+ + + +R + + + + Sbjct: 281 QPVRFHVQVNAGFLLEAVDALPG-----EQLTFRVGGPITPLAVRPR----SVHTSDPAS 331 Query: 376 AFYVLMPMR 384 A+ +LMP++ Sbjct: 332 AYSLLMPLQ 340 >gi|169837663|ref|ZP_02870851.1| DNA polymerase III, beta chain [candidate division TM7 single-cell isolate TM7a] Length = 143 Score = 83.7 bits (206), Expect = 5e-14, Method: Composition-based stats. Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 19/155 (12%) Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290 + + R ID +FP+Y++++ S ++K++ +N + + R +I + + Sbjct: 1 MEILTRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLKRTAIFVRDNKESKNGGIFNF 60 Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 S++KL +T + + + E + + I N K+LL+ I I V L Sbjct: 61 SNNKLLLTGTS-ENAQIKEEIVTIQEGEDLRISLNVKFLLDYISTIKGKVT-----VLEL 114 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++ SSV ++ +D D + Y MP+ + Sbjct: 115 LNNKSSVIVKDEDND---------KSLYFTMPLAL 140 >gi|320450667|ref|YP_004202763.1| putative DNA polymerase III subunit beta [Thermus scotoductus SA-01] gi|320150836|gb|ADW22214.1| putative DNA polymerase III, subunit beta [Thermus scotoductus SA-01] Length = 340 Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 21/203 (10%) Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220 + EE K+ VATDG+R+ + + + K + ++P + V E L+ L + V Sbjct: 131 LLEVGEE--KVRVVATDGYRIHIYTLPAQGHVEK--NYLIPNQ-VKEALKTL---EGPVV 182 Query: 221 V--SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSI 277 + + S + + L ++ + L +FP Y +V P L L+ A+ R + Sbjct: 183 LHEAGSMNALVLEAQNGRVGFPLTKDQFPPYASVFPTQPPVNTLIAERKALQSALKRALL 242 Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNI 336 ++ ++ L + + L + + A E + ++ N K+LL+ + Sbjct: 243 VAHPEDHSIHLQVEDEGLKVQALDHTHTPASEEVVPGEGQG---EVRVNGKFLLQAL--- 296 Query: 337 SSDEVVDDEVVFRL-DSSNSSVF 358 +E ++ V L S + Sbjct: 297 --EECKEERVHLHLHSGPRSPLL 317 Score = 38.3 bits (88), Expect = 1.8, Method: Composition-based stats. Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 30/220 (13%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSI 67 D+LE L A LL+ + + + A+ +PA V + Sbjct: 115 EDLLEALLKALS----------LGKTLLEVGEEKVRVVATDGYRIHIYTLPAQGHVEKNY 164 Query: 68 TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS-TKEEEY 126 + + + ++ L +G + + + +G F L + S + Sbjct: 165 LIPNQ-VKEALKTL-EGPVVLHEAGSMNALVLEAQNGRVGFPLTKDQFPPYASVFPTQPP 222 Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 V + L++ ++R E+ I + +E LK+ A L Sbjct: 223 VNTLIAERKALQSALKRALLVAHPEDHS-----IHLQVEDEGLKVQA-------LDHTHT 270 Query: 187 DIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 ++ + V K + + + K+ V + L Sbjct: 271 PASEEVVPGEGQGEVRVNGKFL--LQALEECKEERVHLHL 308 >gi|1361492|pir||A64200 DNA polymerase III beta chain - Mycoplasma genitalium Length = 267 Score = 83.4 bits (205), Expect = 5e-14, Method: Composition-based stats. Identities = 42/262 (16%), Positives = 108/262 (41%), Gaps = 19/262 (7%) Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAVAT 176 F + F++ S+L +++ +++ EI NG+ F+ ++ A+ Sbjct: 9 FNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFN-GSNGKEIFLEAS 67 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-------IH 229 D ++L+V E+ Q + I+ + I +D S+ + + Sbjct: 68 DTYKLSVFEIK---QETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEML 124 Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288 +++++ +S ++ +FP + ++ V L+ A+ R+ ++ + R + Sbjct: 125 ISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDM 184 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 ++S +L + ++G ++E ++ + ++I FN LL+ I++ S+ E+ Sbjct: 185 QINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESN-----EIN 239 Query: 348 FRLDSSNSSVFIRGKDKDSKNN 369 F ++ I K + Sbjct: 240 FDFQGNSKYFLITSKSEPELKQ 261 >gi|33322987|gb|AAQ07230.1|AF496538_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. lactis] Length = 116 Score = 83.0 bits (204), Expect = 7e-14, Method: Composition-based stats. Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 3/119 (2%) Query: 88 SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147 F E + G ++ I+ +++ + S +P E SF L S L+ L+ +T FA Sbjct: 1 EFTFEVKEGNQIQITSDKADYVINGLDASAYPRLXEI-AGTSFSLPSKTLRELITQTVFA 59 Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206 ++TEE R L G+ F +K AVATD HRL+ VDI A ++ S+I+P K + Sbjct: 60 VSTEESRPTLTGVNFSFKNGQIK--AVATDSHRLSQRIVDIAAGPSEDLSLIIPGKNLQ 116 >gi|330937295|gb|EGH41306.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 84 Score = 82.6 bits (203), Expect = 9e-14, Method: Composition-based stats. Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 14/98 (14%) Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 + L+S +L + +NP+ +A E ++V YN ++I FN YLL+++ +++ ++V Sbjct: 1 MQLASGQLKIQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVR 55 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 L SNSS ++ D D ++ YV+MPMR+ Sbjct: 56 LILSDSNSSALVQESDND---------DSAYVVMPMRL 84 >gi|297157743|gb|ADI07455.1| putative transcriptional regulator, MerR family protein [Streptomyces bingchenggensis BCW-1] Length = 392 Score = 81.0 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 39/248 (15%) Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211 E L + I+ E+++L VATD +RLAV + ++ + +++ + E Sbjct: 163 EEFPVLGRVLVEIDGEEIRL--VATDRYRLAVRALRPLSITGEPCELLLDIDELTETAAW 220 Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE---FPNYQNVIPC--SNDKELRVNCT 266 V V + + + R + G FP Y+ V+ + + + Sbjct: 221 ARRLPE-VAVEVEGRQARVRGGGE---CRELAGSDEVFPAYRMVLDDLGAARHRVIADRG 276 Query: 267 NLRQAV-DRVSIMSSVRIQAVKLSLSSDKLCMTVDNP-----DMGKAI----ESMNVYYN 316 LR+AV DR+ +A+ L+ + D L ++ + P + A ++ Sbjct: 277 GLRRAVADRL----DAGHRAITLTTTGDDLLISTEKPTEIPEEAEDAERPGATALRAIRT 332 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376 P+ I F+ LL +D V +V+ + S V +R D+ S Sbjct: 333 GPPLRIAFDPGVLLPALDA-----SVGPDVLLEIASEARPVVVRSADQGSFTT------- 380 Query: 377 FYVLMPMR 384 ++MP+R Sbjct: 381 --LVMPVR 386 >gi|168205264|ref|ZP_02631269.1| DNA polymerase III beta subunit, C- domain protein [Clostridium perfringens E str. JGS1987] gi|170663111|gb|EDT15794.1| DNA polymerase III beta subunit, C- domain protein [Clostridium perfringens E str. JGS1987] Length = 356 Score = 81.0 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 58/367 (15%), Positives = 139/367 (37%), Gaps = 41/367 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI + +D+ +++ A ++ + + + + + I A+ + G Sbjct: 1 MKIIIN-NDLRKIILSATKVSDTVSIKTI--------KNSMTMISANSNSLFFKGVYANK 51 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 +V V +++R L +I K + + + GD+ E Sbjct: 52 TEVENVEFVLGKKPLELIRMLDLTEEIVISKTDRG---IEVKSGDTRASFA-----EEKE 103 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + + + AS + V+R +A +TE I+ LN I F I D K + +D R Sbjct: 104 FEGLDLDMNLNEASVFDIDAVKRVIYAASTENIQAALNCIEFSI--NDNKCSFICSDSLR 161 Query: 181 LAVAEVDIVAQIAKMPSI-----IVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIE 233 +A ++ AK+ + ++ + E ++ S V S S +++ Sbjct: 162 VARVTEELEPFNAKVSQVKDCEFLIHK---NEFSKLASILQGKVAFSYLPSVNKVIFING 218 Query: 234 SLSMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291 + + V+ I+ + V+ L +++ + ++ V + ++ Sbjct: 219 PIMIGVKCINEPILPLGKFCDELKKTTNSIFVDRAELIKSIQKTLLI----DNKVSIEIN 274 Query: 292 SDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 ++++ ++ N + ++V P + N KY L++++ I D+E+ + Sbjct: 275 NNEVKVSSINKNADLSTTIKVSVDNISVPTTVYLNAKYALDMLNAID-----DEEINIYI 329 Query: 351 DSSNSSV 357 +S + Sbjct: 330 ESPLRPI 336 >gi|213052919|ref|ZP_03345797.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E00-7866] Length = 72 Score = 81.0 bits (199), Expect = 3e-13, Method: Composition-based stats. Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%) Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359 +NP+ +A E ++V Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 1 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 55 Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 56 EDA---------ASQSAAYVVMPMRL 72 >gi|302559421|ref|ZP_07311763.1| OmpA/MotB family protein [Streptomyces griseoflavus Tu4000] gi|302477039|gb|EFL40132.1| OmpA/MotB family protein [Streptomyces griseoflavus Tu4000] Length = 585 Score = 80.7 bits (198), Expect = 3e-13, Method: Composition-based stats. Identities = 45/241 (18%), Positives = 97/241 (40%), Gaps = 21/241 (8%) Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206 A T LN + F L + ATD +R+ V + +A + S+ + + Sbjct: 357 ATFTNGNFEQLNAVHFDAKPGTLTIW--ATDRYRVDVWSIPTLAG-GEAFSLSIFAPEIY 413 Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNC 265 + + ++ V++ E + E +S+ + G P+Y+ +I + +RV Sbjct: 414 SLK--IFNQKERVRMEAGEIFTEFDSEGKMISLGCTEFGNLPDYERLIRSNYATHVRVAR 471 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 +L A++R SS + + L L S + + + P K ++ ++V ++ I Sbjct: 472 ASLLDAIERTVNQSSAKNTPIVLDLGSDGRSEIGIRFPIDRKPLKVVSVEHSGNETSIGL 531 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + + L + + SD+VVD + + + + ++LMP+R Sbjct: 532 SPVFALAALSSF-SDKVVD----LSVSEPGKPLLLTAE---------YDPVHRHILMPVR 577 Query: 385 I 385 + Sbjct: 578 L 578 >gi|58699454|ref|ZP_00374195.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia endosymbiont of Drosophila ananassae] gi|58534026|gb|EAL58284.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia endosymbiont of Drosophila ananassae] Length = 77 Score = 80.3 bits (197), Expect = 5e-13, Method: Composition-based stats. Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%) Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + ++ + A ES+ V YNE P++I FN +YLL+++ I ++ F L N Sbjct: 2 LTLHSNSQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGN 55 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S+ I +D S YV+MPMR Sbjct: 56 SATIITDEDDSSV---------LYVVMPMR 76 >gi|254192274|ref|ZP_04898763.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur 52237] gi|157987469|gb|EDO95245.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur 52237] Length = 203 Score = 79.9 bits (196), Expect = 7e-13, Method: Composition-based stats. Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%) Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA--KM 195 + ++ ++IRYYLNG+ E++ +L VATDGHRL V ++ ++ + Sbjct: 7 ASALKAVQLIAPRDDIRYYLNGVMVEAREKETRL--VATDGHRLVVYRIECNNEVPAGES 64 Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 SIIVP + + + D+ S R+ + + + ++ +D FPNY+ VIP Sbjct: 65 ISIIVPNAVIDRLKLSKDAPDAVTFESADAGRMFFSHDDIRVTFTPVDANFPNYRKVIPE 124 >gi|68171371|ref|ZP_00544765.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] gi|67999196|gb|EAM85852.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa] Length = 113 Score = 79.5 bits (195), Expect = 8e-13, Method: Composition-based stats. Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 4/109 (3%) Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 + +T FA++ EE R+ LNG+ H + LC ATDGHRL++ ++ + II Sbjct: 1 MFGKTKFAISIEESRFNLNGLHVHTSNN--ILCCAATDGHRLSLTKLSQSQNVLSNFGII 58 Query: 200 VPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246 VP+K V EIL+I+S S + + +SLS+ +I + + ++ID F Sbjct: 59 VPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTF 107 >gi|271963839|ref|YP_003338035.1| MerR family transcriptional regulator [Streptosporangium roseum DSM 43021] gi|270507014|gb|ACZ85292.1| putative transcriptional regulator, MerR family [Streptosporangium roseum DSM 43021] Length = 399 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 62/292 (21%) Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 + L + + + A A++E L + + + +++L VATD +RL++ + A Sbjct: 125 GAELASAIRQVVPATASDEDFPALGCVLVELGDGEVRL--VATDRYRLSIRVLHPAAMHG 182 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 I+V + EI +++++ V V + L + L + FP+Y+ + Sbjct: 183 DPRRILVRAADLVEIGPW-AARNAEVTVEVDGEAARLRGAGECRVLTLFEDRFPSYREAL 241 Query: 254 PC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI--- 308 + + V+ R A+ S V +S + D L +TV G+A+ Sbjct: 242 AALGPPECRMIVDRLAFRDAL-----FSLGDTSYVTVSTAGDGLAVTVSTAGDGRAVPGG 296 Query: 309 -----------------------------------ESMNVYYNECPMDICFNYKYLLEII 333 + + P+ I F+ L+ + Sbjct: 297 TAEGGSAARAGTGRDDPAATVAAAGDRTVSTASDAVRLGAICSGPPLRIAFDTATLIPAL 356 Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V +V+ + ++ V +R D+ S ++MP+ + Sbjct: 357 EA-----GVGPDVLLEVSTATHPVIVRSADQGSFTT---------LVMPVAL 394 Score = 40.6 bits (94), Expect = 0.45, Method: Composition-based stats. Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%) Query: 8 SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPASVD-VCG 65 +++ + P VL++ DG + + A+ + I PA++ Sbjct: 126 AELASAIRQVVPATASDEDFPALGCVLVELGDGEVRLVATDRYRLSIRVLHPAAMHGDPR 185 Query: 66 SITVSAHLLYDI 77 I V A L +I Sbjct: 186 RILVRAADLVEI 197 >gi|159036146|ref|YP_001535399.1| MerR family transcriptional regulator [Salinispora arenicola CNS-205] gi|157914981|gb|ABV96408.1| transcriptional regulator, MerR family [Salinispora arenicola CNS-205] Length = 354 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 30/267 (11%) Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182 +E + + L+ +VL ++ FA+ ++ L G+ + + VATD +R+A Sbjct: 112 QENPMTTVTLSRAVLAAALDSVRFAVGSDPELPMLAGVLVDAEADGVTF--VATDRYRMA 169 Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242 + ++ P V + R + V + L I + ++ + Sbjct: 170 IHREPATVDGPATR-MLAPVSWVDRL-RDQPGRHEPVILHLDSVEIEAAGDGWTIKDTPL 227 Query: 243 DGEFPNYQNVI----PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM- 297 ++P+Y+ I + + V+ L+ V + R + V L+ L + Sbjct: 228 AYDYPDYRRAIQARTADGSPRCAPVDAAALQARVGGAPRVVH-RHEGVDHELT--VLAIG 284 Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357 T D+ A E + N ++LLE + + ++V L + Sbjct: 285 TAGGIDVVGAQEWRA----GQDRHVAVNRQFLLEALSAGG-----EGQLVLELAGPIRPL 335 Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384 IR D A+ +LMP++ Sbjct: 336 AIRRPADD---------RAYSLLMPVK 353 Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 12/62 (19%), Positives = 23/62 (37%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62 +T+ R+ + L + +P+ VL+ A + A+ PA+VD Sbjct: 119 VTLSRAVLAAALDSVRFAVGSDPELPMLAGVLVDAEADGVTFVATDRYRMAIHREPATVD 178 Query: 63 VC 64 Sbjct: 179 GP 180 >gi|302529416|ref|ZP_07281758.1| predicted protein [Streptomyces sp. AA4] gi|302438311|gb|EFL10127.1| predicted protein [Streptomyces sp. AA4] Length = 351 Score = 79.1 bits (194), Expect = 1e-12, Method: Composition-based stats. Identities = 37/263 (14%), Positives = 87/263 (33%), Gaps = 40/263 (15%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 S ++ V VE+ A + LNG+ ++ + L ATD +RL+ Sbjct: 120 PAPSVQVTGPVFTAAVEQVLTATTQD--LPVLNGVHLEVSPAAIVL--TATDRYRLSTRT 175 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 + A + + + + + + +S+ I + + R + + Sbjct: 176 LVPAEPSASTWTATADADDLRLAMPW-TRRQHDLHLSVRADEIWFQGDDAVRTCRTLSED 234 Query: 246 FPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 FP+Y+ ++ + ++ L ++R ++L LS+ + + Sbjct: 235 FPDYRLMLASLPEVLTRAVISRNALVAGLER------QYTAQIQLDLSATAITV------ 282 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS--DEVVDDEVVFRLDSSNSSVFIRG 361 IE + P+ + F + + V +V+ + + V +R Sbjct: 283 ---GIERIPADVTGPPITLSF-------AVSTLHPAISTAVGPDVMLDVAGPHLPVVVRS 332 Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384 D + MP++ Sbjct: 333 ADDGDLTT---------LAMPVK 346 >gi|147538|gb|AAA24510.1| DNA polymerase III beta subunit [Escherichia coli] Length = 70 Score = 78.7 bits (193), Expect = 1e-12, Method: Composition-based stats. Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 14/84 (16%) Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 P+ +A E ++V Y+ M+I FN Y+L++++ + + V L S SSV I Sbjct: 1 PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQIED 55 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 56 A---------ASQSAAYVVMPMRL 70 >gi|307069625|ref|YP_003878102.1| DNA polymerase III subunit beta [Candidatus Zinderia insecticola CARI] gi|306482885|gb|ADM89756.1| DNA polymerase III, beta subunit [Candidatus Zinderia insecticola CARI] Length = 366 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 71/342 (20%), Positives = 151/342 (44%), Gaps = 24/342 (7%) Query: 46 ASGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG 104 S EI++ I + + + I+ L ++ + + + Sbjct: 47 TSNNEIQLEFKINIKKNYDNIKFLIDSEKFIKIISYL---KNSNYIYIYIIKNIIILKSK 103 Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVL-KNLVERTHFAMATEEIRYYLNGIFFH 163 N L+S FP + K + + + +++ +Y LNG+ + Sbjct: 104 KYNTILKSQKFKNFPIFNKIIKKKICFKVKEYKIKKIFKILYNSISNINAKYSLNGLLIN 163 Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223 I ++ K+ ++TDG RL+ ++I II+P+K + EI++IL+ + +K+ + Sbjct: 164 IEKK--KISFLSTDGFRLSYYFLNIKNNY--KTKIIIPKKNIFEIIKILNYEKKKIKIII 219 Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283 ++ I I + RLI +F NY+ +I ++++N + + ++S++ +I Sbjct: 220 LKNYIIFKIFKIKFISRLIKEDFINYKYIINKKYRYKIKINRKKILNIIKKISLIEKDKI 279 Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343 + +K ++ + L ++ N + E +N+ Y ++I N KYLLEI+ NI + Sbjct: 280 KIIKFNIKRNNLKISSFNKIEEISNEKININYKNKNININLNIKYLLEILTNIK-----N 334 Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 ++F+ + S+ I+ NK N Y++MP+ I Sbjct: 335 KHIIFKF-NKKKSILIKI---------YNKKNFKYIIMPIEI 366 >gi|302542965|ref|ZP_07295307.1| putative transcriptional regulator [Streptomyces hygroscopicus ATCC 53653] gi|302460583|gb|EFL23676.1| putative transcriptional regulator [Streptomyces himastatinicus ATCC 53653] Length = 354 Score = 77.6 bits (190), Expect = 3e-12, Method: Composition-based stats. Identities = 46/270 (17%), Positives = 94/270 (34%), Gaps = 35/270 (12%) Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMAT---EEIRYYLNGIFFHINEEDLKLCAVAT 176 + + L V + A+A E L + + E++L+L VAT Sbjct: 113 ELPGGARSGQARVGGAELAGAVRQVGSAVAVGTVREEFPVLGRVLIELAEQELRL--VAT 170 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 D +RL+V + +A + + V + + ++ V + + + + Sbjct: 171 DRYRLSVRALRPLAIGGEPCGLTVGIEELRDLAGWARGLPE-VAIEVDAGEVRVRGGGEE 229 Query: 237 MSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 ++ + D FP Y+ V+ + + L AV V L Sbjct: 230 RALSVADEAFPAYRMVLDGLADARHRVITDRAALCTAVAE-----RGGDGPVVLRTGDGV 284 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 L + + G+ +++ P+ I F+ LL ++ V +V+ + S Sbjct: 285 LTV-----EGGR---TLSALCTGSPLRIAFDPAVLLPALEA-----GVGPDVLLEVASGG 331 Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V +R D+ S ++MP+R Sbjct: 332 EPVVVRSADQGSFTT---------LVMPVR 352 >gi|304360715|ref|YP_003856846.1| putative DNA polymerase III beta subunit [Clostridium phage phiCTP1] gi|302495574|gb|ADL40354.1| putative DNA polymerase III beta subunit [Clostridium phage phiCTP1] Length = 351 Score = 77.2 bits (189), Expect = 4e-12, Method: Composition-based stats. Identities = 53/349 (15%), Positives = 134/349 (38%), Gaps = 35/349 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+I ++ + + ++ A + + P++ ++ L +G+ + ++ +T + + Sbjct: 1 MEIKIKTAVLKKITAIAEKGVGADKNQPITSYLHLYTKEGIFYMDSTDGYRFLTVSSKLA 60 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 G V A +V K + EL I G+ + + E Sbjct: 61 ECTDGDCIVLAEPFIKLVNK-----TTKEDVKLELLDTSLIFKGNGTYKIPILDEEFLSY 115 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 E ++ +KN++ ++A +E L G F VATD Sbjct: 116 --EFTAGTKEDINIDKIKNVLAIGKNSIAPDDESFGALRGYLFGDK-------VVATDSI 166 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239 ++ + +V + ++ +++ ++ ++ + + + +E +I + +++ + Sbjct: 167 KMCLVNTKLVGKP------MLVNQSMARLINVIPEEKGT--IQFAEGKILIETDTVKLFG 218 Query: 240 RLIDG--EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLC 296 ++ ++P+ V+ +N + +DR+ I S AVKL ++ + Sbjct: 219 AALNEIDQYPDLSVVLDNEFSSNCLLNKNVMLDILDRLDIFVSPYDKNAVKLQFGTNGIT 278 Query: 297 MTVDNPDMGKAIESMNVYYNE----CPMDICFNYKYLLEIIDNISSDEV 341 +T N G +E + Y+ +I + L +II+ + +D Sbjct: 279 VTEVN---GDGVEKI--AYSGSTDFKEFEIPLDITMLKDIINAVQADTF 322 >gi|75992444|dbj|BAE45110.1| putative DNA polymerase III beta subunit [Terrabacter sp. DBF63] Length = 373 Score = 76.8 bits (188), Expect = 5e-12, Method: Composition-based stats. Identities = 63/393 (16%), Positives = 136/393 (34%), Gaps = 53/393 (13%) Query: 9 DILELLGHACRIIER-KNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPASVDVCGS 66 D+LE L ++ K+ VLL DG + S E+ + +P+S Sbjct: 16 DLLEALAPLRPVLSTAKHAPAPLRSVLLSVEMDGATSLSCSTGEVSMQVGLPSSQTS--- 72 Query: 67 ITVSAHLLYD--IVRKLQDGAQISFFKENELGTEVNISHGDSNF-------YLQSFPESE 117 T + D +RK ++ + ++ + Y+ + Sbjct: 73 -TAAGQAWIDHTALRKAATALAARRGAGAQVDLSLTVTADGARLSDGTRVMYIDVLDDVH 131 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 P T V + + + + A + + + + VATD Sbjct: 132 LPPTMAPAAVTWVSDRAELAERVAAVASAAATPDCNVPIITAMRLATDG------VVATD 185 Query: 178 GHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236 +RL A + + P V K + + +V + + R+ ++ ++++ Sbjct: 186 KYRLTKAPLPGTGDLEPAQPPAHVFAKVIKTL------TGDTVSLGVDADRLTISTDTVT 239 Query: 237 MSVRLIDGEFPN-YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 ++R + G++P ++ + +RV+ T L + ++A K++L++ Sbjct: 240 ATLRGLQGDYPRGVTSIGEFDDATTVRVDRTGLLDLIKP-----HQNVRAAKVTLATIGQ 294 Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDI---CFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + V D G+A+ + V P I N YL + + + EV + S Sbjct: 295 TIDVTVDDGGRALVTAQVPACTPPEKIEPVTLNAAYLADALRAVGGA-----EVSIHVQS 349 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + V + G + V+ P+R+ Sbjct: 350 TLRPVKVAGDGDITA-----------VVQPIRV 371 >gi|218291396|ref|ZP_03495339.1| DNA polymerase III beta chain [Alicyclobacillus acidocaldarius LAA1] gi|218238751|gb|EED05967.1| DNA polymerase III beta chain [Alicyclobacillus acidocaldarius LAA1] Length = 121 Score = 76.4 bits (187), Expect = 7e-12, Method: Composition-based stats. Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%) Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312 +P E + L +A++RV+I++ V L + L +T + + G A E + Sbjct: 1 MPREFTAECSIERRRLEEAIERVTILAENERHTVSLYVKDGVLELTSRSAERGHAREEVP 60 Query: 313 -VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 + + + N +Y+L+ + + S + V V Sbjct: 61 LTAFKGDEVKVALNARYVLDTLSAVESSKTVRMLV 95 >gi|91176174|dbj|BAE93152.1| putative DNA polymerase III beta subunit [Microcystis aeruginosa] Length = 76 Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 14/87 (16%) Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V++PD+G A ESM DI FN KYL++ + + +++ + +L++S V Sbjct: 2 VESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQLNASTQPVI 56 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385 + Y++MP++I Sbjct: 57 FTP---------LGGLKMTYLVMPVQI 74 >gi|19423269|gb|AAL88454.1|AF480365_2 DNA polymerase III [Streptomyces avermitilis] Length = 52 Score = 74.1 bits (181), Expect = 3e-11, Method: Composition-based stats. Identities = 18/52 (34%), Positives = 27/52 (51%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE 52 MKI VER + E + A R + + PV +LL+A DG L + + E+ Sbjct: 1 MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLRAEDGALSLSSFDYEVS 52 >gi|313621674|gb|EFR92459.1| DNA polymerase III, beta subunit [Listeria innocua FSL S4-378] Length = 65 Score = 73.3 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 29/64 (45%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK +ER +++ + R I + TIP+ + + ND + + S +I I IP Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60 Query: 61 VDVC 64 + Sbjct: 61 ENDE 64 >gi|291333915|gb|ADD93595.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 84 Score = 73.3 bits (179), Expect = 6e-11, Method: Composition-based stats. Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 14/98 (14%) Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347 +SL+ D L + +NP+ A E + V Y+ ++I FN YL E + I D Sbjct: 1 MSLNKDLLKIEANNPEKESAEEEIKVDYSGPELEIGFNISYLQESLTTIK-----DLSAE 55 Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 SS ++ K+ + + +V+MPMR+ Sbjct: 56 IVFFGQESSCIVKNKENE---------DLIHVIMPMRL 84 >gi|229065228|ref|ZP_04200513.1| DNA polymerase III, beta subunit [Bacillus cereus AH603] gi|228716055|gb|EEL67785.1| DNA polymerase III, beta subunit [Bacillus cereus AH603] Length = 178 Score = 72.2 bits (176), Expect = 1e-10, Method: Composition-based stats. Identities = 28/181 (15%), Positives = 74/181 (40%), Gaps = 25/181 (13%) Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264 V L++ + + + +S++++ + ES+ RL+ G +P+ ++P + N Sbjct: 23 VKTALKLFNRETNLQLKLISDTQLLIRGESIIYQPRLLAGTYPDTARMVPGQFKIK---N 79 Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324 A + +++S + + + N +G A + + Sbjct: 80 TLEQLSAFSSLIVLTSE---------GKESIHLKPQNSQVGTASVEIPCNQV-EAFTLAC 129 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 N +YLL+ + ISS++ + ++ S+ + + G + +N +++P+R Sbjct: 130 NVEYLLQALQTISSEK-----IAIKMISNQRPIVVVGAEDTIHSN-------LQLILPVR 177 Query: 385 I 385 + Sbjct: 178 V 178 >gi|307325259|ref|ZP_07604462.1| transcriptional regulator, MerR family [Streptomyces violaceusniger Tu 4113] gi|306889063|gb|EFN20046.1| transcriptional regulator, MerR family [Streptomyces violaceusniger Tu 4113] Length = 350 Score = 71.8 bits (175), Expect = 1e-10, Method: Composition-based stats. Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 50/279 (17%) Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + + L V + VE+ A A E L G+ E + L ATD + Sbjct: 103 SLVDTPSLPITALKGPVFADAVEQVLTATAHEPEMPVLVGLRLEATPEAVTL--TATDRY 160 Query: 180 RLAVAEVDIVAQIAKMPSIIVP----RKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 RL+ + + V R A+ EI R + V+V + I L + Sbjct: 161 RLSTRTLVPGEPATSAWAATVHGDELRAALTEIRRS-----TLVRVEATRHGIWLRLADR 215 Query: 236 S-MSVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 RL+ EFP+Y+ ++ + + V+ L +A++ + V L L+ Sbjct: 216 EDQHCRLLTEEFPDYRLMLASLPEVNTRVTVSKDLLLRALE------EHPGERVALRLAP 269 Query: 293 DKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISS-----DEVVDDE 345 + + G A + + I F +++ + E Sbjct: 270 HGMNILP----AGDAHPDVPIPATVTGQDLRISF----------QLTTLYPAVSTAIGPE 315 Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 V+ L ++ V IR D+ + MP++ Sbjct: 316 VMLDLRGADQPVTIRSADRGDLTT---------LAMPIK 345 Score = 38.7 bits (89), Expect = 1.6, Method: Composition-based stats. Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 1/53 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPAS 60 + + + +PV + L+A + + A+ + +P Sbjct: 119 VFADAVEQVLTATAHEPEMPVLVGLRLEATPEAVTLTATDRYRLSTRTLVPGE 171 >gi|257055382|ref|YP_003133214.1| putative transcriptional regulator [Saccharomonospora viridis DSM 43017] gi|256585254|gb|ACU96387.1| predicted transcriptional regulator [Saccharomonospora viridis DSM 43017] Length = 346 Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 47/266 (17%) Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 + + L + + + A+A E L + + DL+L VATD +RL V E+ A Sbjct: 114 TVGGAELASAIRQVTPAVADSEEFPQLRCVLLECSASDLRL--VATDRYRLTVRELVPHA 171 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM-----SVRLI--D 243 +VP A+ + D+ V++ + ++ HL + +V L D Sbjct: 172 VCGAPARALVPADALVDAAPWALRHDA-VRLIIEDTGAHLVAMDTASDEASDTVPLPTHD 230 Query: 244 GEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC---MT 298 G++P+Y+ ++ + + + L +A+ +S V L D L +T Sbjct: 231 GDYPDYRALLDALEPFTCRVVTDRSALLEALT-----ASRDPSYVPLHADGDTLHVGGVT 285 Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 V A + + ++ V +V+ + + + V Sbjct: 286 VPAVCSRTARLAFDAAVLGPAVEAG------------------VGPDVLLEITADDRPVV 327 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384 +R D+ S ++MP+R Sbjct: 328 VRSADQGSFTT---------LVMPVR 344 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIP-ASV 61 TV +++ + + P VLL+ + L + A+ + + +P A Sbjct: 114 TVGGAELASAIRQVTPAVADSEEFPQLRCVLLECSASDLRLVATDRYRLTVRELVPHAVC 173 Query: 62 DVCGSITVSAHLLYD 76 V A L D Sbjct: 174 GAPARALVPADALVD 188 >gi|62177289|gb|AAX70928.1| DNA polymerase III beta chain [Mycoplasma hominis ATCC 23114] Length = 105 Score = 71.8 bits (175), Expect = 2e-10, Method: Composition-based stats. Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI----EITGA 56 MK+ +++ + + + ++ +PV +L+QA D + + S E EI + Sbjct: 1 MKLKIDKLLLDNAIERVSKSVDANPFLPVMKGILIQAEDNKITLIGSNGETSIKHEIETS 60 Query: 57 IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100 I A +++ G + V L +I++KL DG + N L N Sbjct: 61 IDAQIELPGIVLVELSLFKNIIKKL-DGEIVLEVVNNILKISTN 103 >gi|58699676|ref|ZP_00374350.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] gi|58533805|gb|EAL58130.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Drosophila ananassae] Length = 86 Score = 71.4 bits (174), Expect = 2e-10, Method: Composition-based stats. Identities = 16/64 (25%), Positives = 36/64 (56%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M+ +V R+ +L L ++ER+N+I V + ++A G +++ A+ +I + ++ A+ Sbjct: 21 MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 80 Query: 61 VDVC 64 V Sbjct: 81 VLTE 84 >gi|118796|sp|P24701|DPO3B_ACTPL RecName: Full=DNA polymerase III subunit beta gi|38952|emb|CAA45172.1| DnaN [Actinobacillus pleuropneumoniae] Length = 64 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 14/78 (17%) Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367 E ++V Y M++ FN YLL++++ + + V F L ++SS I D + Sbjct: 1 EEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCLIEDCDNSTA 55 Query: 368 NNKDNKVNAFYVLMPMRI 385 YV+MPMR+ Sbjct: 56 E---------YVIMPMRL 64 >gi|291437274|ref|ZP_06576664.1| chromosome segregation ATPase [Streptomyces ghanaensis ATCC 14672] gi|291340169|gb|EFE67125.1| chromosome segregation ATPase [Streptomyces ghanaensis ATCC 14672] Length = 582 Score = 71.0 bits (173), Expect = 3e-10, Method: Composition-based stats. Identities = 47/316 (14%), Positives = 116/316 (36%), Gaps = 39/316 (12%) Query: 78 VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137 +R+L+D +E E V +++ + K+ E+ +S L Sbjct: 296 LRQLRDDYHPEVREEIEHQIAVAPKKPRRKVPIRTIED------KQVRSPKWVEVPASSL 349 Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197 N + ++ + + + + + E++KL ATD +R+ + + I+ + + Sbjct: 350 VNASQVAATFVSRDASYEIYSYVHYTFSNEEMKLW--ATDRYRIDIWRLPILGK-GDDFA 406 Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF---PNYQNVIP 254 +P + + V++ + ++ + +S+R +F P+Y++++ Sbjct: 407 TSLPGDLAFSLKAF--NGKKKVRMEVGDTVCEFDCNGKLLSIR--SAKFDNLPDYESMMG 462 Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS---SDKLCMTVDNPDMGKAI--E 309 + V L A++R ++ R + L L+ D L + + G+ E Sbjct: 463 KDVTTSIHVARIPLLDALERTLAATNARNSPIILDLTGSAGDALELYFE----GELFPGE 518 Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 S+ V + ++ + V + S+ + +K Sbjct: 519 SVPVKLAGERVK--------------LAFNANFAIAAVSSFSNGTISISVTNPNKPVLIT 564 Query: 370 KDNKVNAFYVLMPMRI 385 D + ++LMP+R+ Sbjct: 565 SDGEPEHRHILMPVRL 580 >gi|302536583|ref|ZP_07288925.1| DNA polymerase III, beta subunit [Streptomyces sp. C] gi|302445478|gb|EFL17294.1| DNA polymerase III, beta subunit [Streptomyces sp. C] Length = 373 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186 +++ L ++ FA +T+ L G+ F + E L VATD +RLAV+ Sbjct: 133 AVRLTVSAPGLAAALDAVRFAASTDPELPMLGGVLF--DAEGGTLRVVATDRYRLAVSAT 190 Query: 187 DIVAQ-----IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241 + +VP + + +R L + S ++ + R+ L R Sbjct: 191 AVTGAGTGEYDGSRVQAVVPS-PLVDAMRALLGAEGSAELRVEGDRVVLEAGERQAGGRC 249 Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 FP+Y+ + + V+ R+A+ + S VR Q + D + V + Sbjct: 250 GGTGFPDYRRLSRLPAGRRATVDVPAFREALRGGPVRSQVREQD---GAAYDVSVLEVTD 306 Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 E + N + D +V + + I Sbjct: 307 GGTVSVREH---ASPGD--RVGVN-----RAFLLEALAAADRDRLVLEAGTGPRPLTISR 356 Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385 D + + +LMP+R+ Sbjct: 357 GDDEETYS---------LLMPVRV 371 Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 8/87 (9%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG---PEIEITGAIP 58 ++TV + L +P+ VL A G L + A+ + T Sbjct: 135 RLTVSAPGLAAALDAVRFAASTDPELPMLGGVLFDAEGGTLRVVATDRYRLAVSATAVTG 194 Query: 59 ASVDV-CGS---ITVSAHLLYDIVRKL 81 A GS V + L D +R L Sbjct: 195 AGTGEYDGSRVQAVVPSP-LVDAMRAL 220 >gi|291520349|emb|CBK75570.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Butyrivibrio fibrisolvens 16/4] Length = 81 Score = 69.1 bits (168), Expect = 1e-09, Method: Composition-based stats. Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 15/85 (17%) Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 + +G E +++ + I FN K++++ + I D+E+ + ++ S F Sbjct: 4 SISSHIGSMNEDIDIVKEGKDIMIGFNPKFVMDALKVID-----DEEINLYMLNAKSPCF 58 Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383 I KD++ + Y+++P+ Sbjct: 59 I----------KDDEGSFIYIVLPV 73 >gi|121610651|ref|YP_998458.1| DNA polymerase sliding clamp subunit-like protein [Verminephrobacter eiseniae EF01-2] gi|121555291|gb|ABM59440.1| DNA polymerase sliding clamp subunit-like protein [Verminephrobacter eiseniae EF01-2] Length = 366 Score = 68.7 bits (167), Expect = 1e-09, Method: Composition-based stats. Identities = 56/321 (17%), Positives = 114/321 (35%), Gaps = 35/321 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MK T+ + + + ++ ++ G L + A + ++ Sbjct: 1 MKTTI--GALKRAIKKVLKAVDC-------ASCAIKVESGALSVIA----MSAQASVKIL 47 Query: 61 VDVCGSI-----TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115 V G+ + A I+ + D + + + + G + L Sbjct: 48 VPAQGNAGDCCAVIGAKQAGAILGSVLDCTECTIEAIEQGA---QLVFGGARIKLMRPAG 104 Query: 116 SE-----FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + F + + + FE + L+ A ++RYYL G+ H + Sbjct: 105 ANDGIDLFDAPADGDKRVVFETSGRDFAGLMAGPVQYAAKSDVRYYLVGV--HATCDAGA 162 Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES---R 227 L ++G L A I A A M IVP A I + + + L + R Sbjct: 163 LRLTGSNGFMLCTAAGAIDAS-ASMVDCIVPHTAADSIGAVFGADERITVCQLGKDANLR 221 Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVRIQAV 286 + ++ E++ + L+ G+FP+++ V+P + +++ L AV RV S V Sbjct: 222 LLMHSETIQWNTALVAGKFPDFRRVMPGPKRIGQCKLSRDALSAAVSRVLAASGDVF--V 279 Query: 287 KLSLSSDKLCMTVDNPDMGKA 307 L L+ L + + + + Sbjct: 280 ALHLTRKGLEVRSVDGEQCEV 300 >gi|169825460|ref|YP_001695635.1| hypothetical protein Bsph_p046 [Lysinibacillus sphaericus C3-41] gi|168994737|gb|ACA42276.1| hypothetical protein Bsph_p046 [Lysinibacillus sphaericus C3-41] Length = 393 Score = 68.3 bits (166), Expect = 2e-09, Method: Composition-based stats. Identities = 51/299 (17%), Positives = 113/299 (37%), Gaps = 26/299 (8%) Query: 3 ITVERSDILELLGHACRIIER---KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 + D+ ++ + R KNT+ + + A+ + +K G E+ ++ I A Sbjct: 17 FRINSKDLKIVVERVMKSARRAKLKNTV-----IDVIASGTTIILKFGGSELFVSQKIEA 71 Query: 60 SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117 ++ S TV L V L + I+ +++ ++ G S+ +++ Sbjct: 72 NITKELNFSTTVMELNLK--VSALPNNELITVEEKD---NKIYFKWGRSSLVRVERVDNQ 126 Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI-----RYYLNGIFFHINEEDLKLC 172 E S+E + + ++ + A L GI+ +E +L Sbjct: 127 CIEMSFEGQGESYEWSYNSIQRITRNMTSFTAINGTAEAKKIPQLAGIYIQYKKEYTELH 186 Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 A+D + A++ V+ + P+ I P + + +LS S +S + Sbjct: 187 --ASDSKK-AISMVETDIKWFDEPAAI-PTETWFAMYELLSEDSIINISSNGKSLVKFES 242 Query: 233 ESLSMSVRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 ES + R+I G +P+ ++ P ++ L +A R + + ++L+ Sbjct: 243 ESTVIISRIIIGTYPDLSSIYVQPEQTATRWTIDRLELLEATRRARHLITTTGSNIELN 301 >gi|303245428|ref|ZP_07331712.1| DNA polymerase III beta chain [Desulfovibrio fructosovorans JJ] gi|302493277|gb|EFL53139.1| DNA polymerase III beta chain [Desulfovibrio fructosovorans JJ] Length = 393 Score = 68.0 bits (165), Expect = 3e-09, Method: Composition-based stats. Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 20/284 (7%) Query: 24 KNTIPVSCHVLLQA---NDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYDIVR 79 KNT ++ +V A G + + A+ +++ + A + A D+V Sbjct: 30 KNT--INGNVWFDASASTHGRITLTATDGTLDVHCRLTAAPGFDPFRCGLPARKSLDLVS 87 Query: 80 KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139 +L I + + + G + L ++ E + Sbjct: 88 RLPAAPIIL--SPDPDAGMLRLRCGRTRASLPMT---DWRYAPTLEPLPETTHPLDPAPL 142 Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 A + + L+ + F E L A DGH+ +V + Sbjct: 143 AAAIAAAAPSAGDEEEGLDQVRFTPFGEAGALRVEALDGHQFVRVDVPGQGGQQGWWRAV 202 Query: 200 VPRKAVGEILRILSSK---DSSVKVSLSESRIHLN--IESLSMSVRLIDGEFPNYQNVIP 254 V E R+ +++ +++S+ R+ + S+ VR G + ++ Sbjct: 203 PDAFGV-EARRMGPGAKWIETARAMAVSDKRLFFVDAVGWWSLPVRR--GVWVETDRLMA 259 Query: 255 C-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297 + + + A +R++I + + L+L + Sbjct: 260 KVEDVYAVDIRAQVFADAAERLAIYLPEGSKNMCLTLGQGDASL 303 >gi|300865073|ref|ZP_07109899.1| hypothetical protein OSCI_1460025 [Oscillatoria sp. PCC 6506] gi|300336937|emb|CBN55049.1| hypothetical protein OSCI_1460025 [Oscillatoria sp. PCC 6506] Length = 121 Score = 67.2 bits (163), Expect = 4e-09, Method: Composition-based stats. Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 11/126 (8%) Query: 261 LRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318 + + +A++R+++++ + + ++++ + ++ +++ + G +E M + N Sbjct: 1 MTLEKAPFIKALERIAVLADKKEKTLSIRINSEAQQVSLSLF-REFGNGLEQMAAHVNSD 59 Query: 319 P-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377 I FN KYLLE ISS +V L + + ++ + ++ Sbjct: 60 DNFSISFNIKYLLEGAKAISSS-----QVQMHLTQHDGPAILVPFGN--RDKPNILMDTK 112 Query: 378 YVLMPM 383 Y+LMP+ Sbjct: 113 YLLMPI 118 >gi|296128245|ref|YP_003635495.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM 20109] gi|296020060|gb|ADG73296.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM 20109] Length = 327 Score = 67.2 bits (163), Expect = 5e-09, Method: Composition-based stats. Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 45/235 (19%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208 + L G+ H++ L+L V D RLAVA V + ++ P + ++ Sbjct: 133 GDDPAWPGLAGVLMHLDATSLRL--VGCDRSRLAVATVPVRRPSGAEVRVVAPLAFLDDL 190 Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268 D V + + +D +P+YQ ++ + + V +L Sbjct: 191 ASAELPADGPVVLGSRTLEVLGRHGEP------LDAAYPDYQQLLRSGGSRHVTVATVDL 244 Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 +AVD + V + L D++ + PD + F+ + Sbjct: 245 VEAVDGA-------DEIVVVRLDGDRVALGAPGPDDA----------------LGFSRTF 281 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 LL+ + + + V L+ + + + + ++MP+ Sbjct: 282 LLDAVRAARA-----EHVALALEDERAVLSVSPAGRPGDVG---------LVMPV 322 >gi|218134378|ref|ZP_03463182.1| hypothetical protein BACPEC_02272 [Bacteroides pectinophilus ATCC 43243] gi|217989763|gb|EEC55774.1| hypothetical protein BACPEC_02272 [Bacteroides pectinophilus ATCC 43243] Length = 77 Score = 66.8 bits (162), Expect = 5e-09, Method: Composition-based stats. Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 15/82 (18%) Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361 +G E++ V + I FN K+L++ + I D+ V L + + FIR Sbjct: 7 SSIGSLNENVAVEKEGKDIMIGFNPKFLMDALGKID-----DENVDIYLLNPKAPCFIRD 61 Query: 362 KDKDSKNNKDNKVNAFYVLMPM 383 K++ N Y+++P+ Sbjct: 62 KEE----------NYIYLILPV 73 >gi|281356314|ref|ZP_06242806.1| hypothetical protein Vvad_PD1685 [Victivallis vadensis ATCC BAA-548] gi|281317006|gb|EFB01028.1| hypothetical protein Vvad_PD1685 [Victivallis vadensis ATCC BAA-548] Length = 424 Score = 66.4 bits (161), Expect = 8e-09, Method: Composition-based stats. Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 36/302 (11%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 MKI +S + E L +++ + + + + V + + A+ +T + Sbjct: 1 MKIR--KSVLQEALKVLGKVVSQTSPVEIQRSVRFLGVGAQVWLTATDGVESVTIEVAGD 58 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V L +++R G EV ++ N +P Sbjct: 59 AGEMEDFAVDYKALRELIRS-------------TRGGEVEVTGKQLN----------WPE 95 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 + S L+ + E R L GI + AT+G Sbjct: 96 MEAVPDDAVTVELPSDFGKLLALAAPVVDLREARLALRGINLSRDG------VTATNGKE 149 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 L +++ + + +P I R + + +E + I + Sbjct: 150 L----LNLPCPLKIPEDMTLPFPLALLIARPEGAGTLHIWRCRNERLFRIVIGGFQWQGK 205 Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTV 299 ++ G FP+++ V+P + R+ + + + + A++L++ + + Sbjct: 206 VLPGNFPDWKQVMPADKTLDYRIEIYEPERVITFLKAVPDCPPFHAIELNVVPGGVTVIP 265 Query: 300 DN 301 +N Sbjct: 266 NN 267 >gi|327179744|gb|AEA30292.1| putative DNA polymerase III [Streptomyces sp. Acta 2897] Length = 84 Score = 66.0 bits (160), Expect = 1e-08, Method: Composition-based stats. Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58 M+ +ERS + + + A R++ ++ +PV +LL+ L I E + Sbjct: 1 MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLETGGEGGPLRISGLDYEASARIDVD 60 Query: 59 ASVDVCGSITVSAHLLYDIVRKLQ 82 A V G + V L DI + L Sbjct: 61 AGVTRLGKVLVMGRRLLDICKVLP 84 >gi|291333917|gb|ADD93597.1| hypothetical protein [uncultured marine bacterium MedDCM-OCT-S04-C385] Length = 74 Score = 65.3 bits (158), Expect = 2e-08, Method: Composition-based stats. Identities = 16/59 (27%), Positives = 32/59 (54%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59 M+ + ++D++E A + E++ +IP+ +VL+ A ++I A+ EIE I Sbjct: 1 MEFNINKNDLVEPALLASNVSEKRQSIPILSNVLISAAKNSIKITATDLEIEYKTTIEG 59 >gi|213422866|ref|ZP_03355900.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E01-6750] Length = 59 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%) Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214 YYLNG+ F +L+ VATDGHRLAV + + A + S+IVPRK V E++R+L Sbjct: 1 YYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDG 57 Query: 215 KD 216 + Sbjct: 58 GE 59 >gi|330469507|ref|YP_004407250.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] gi|328812478|gb|AEB46650.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032] Length = 396 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 19/145 (13%) Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204 FA+ T+ L G+ F + + L+L VATD HRLAVA + + + ++P Sbjct: 134 RFAVGTDPTVPALTGVLFDVTDSGLEL--VATDRHRLAVATAEATVHGPAVRT-LLPLDT 190 Query: 205 VGEILRILSSKDSS------------VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 V + +L + + V++++S S + ++ + + +FP+Y + Sbjct: 191 VDALRHLLDASAGAGAGAGAGADRAVVELTVSGSSLVADVAGHELRATALPYDFPDYHAL 250 Query: 253 IPCS----NDKELRVNCTNLRQAVD 273 +P S + + V+ L A+ Sbjct: 251 LPRSGAAGPTRRVPVDAEWLVTALR 275 Score = 47.5 bits (112), Expect = 0.003, Method: Composition-based stats. Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 14/67 (20%) Query: 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY 378 + + N +YLL+ +D + LDS + + IR D + AF Sbjct: 344 ELRVGVNGEYLLDALDAAGGRH-----LTLELDSPLTPLTIRRPDDE---------GAFS 389 Query: 379 VLMPMRI 385 +LMP+R+ Sbjct: 390 ILMPIRL 396 Score = 41.0 bits (95), Expect = 0.32, Method: Composition-based stats. Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%) Query: 20 IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SITVSAHLLYDIV 78 + T+P VL D LE+ A+ A+V + D + Sbjct: 136 AVGTDPTVPALTGVLFDVTDSGLELVATDRHRLAVATAEATVHGPAVRTLLPLDT-VDAL 194 Query: 79 RKLQDGA 85 R L D + Sbjct: 195 RHLLDAS 201 >gi|303250285|ref|ZP_07336485.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|307252050|ref|ZP_07533950.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|302650901|gb|EFL81057.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] gi|306860519|gb|EFM92532.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae serovar 6 str. Femo] Length = 205 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 35/175 (20%), Positives = 76/175 (43%), Gaps = 12/175 (6%) Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 + ++ ++R LNG++F++ C AT+GH + ++ A K Sbjct: 9 DIDVLYLKAASLFAGKNDVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPK 64 Query: 195 MPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 I+P + + +IL I ++V+ ++ I + +++ + I+G+FPN Sbjct: 65 RKGFIMPNELIKQILLIKPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLC 124 Query: 251 NVIP--CSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLCMTVDN 301 V P SN+K N + A ++ + + + +LS + +++DN Sbjct: 125 AVYPLKESNNKTKTYNANYINLAAKATKLLKPIIGKDAGIDFNLSDNSSILSIDN 179 >gi|315157443|gb|EFU01460.1| DNA polymerase III beta subunit protein [Enterococcus faecalis TX0312] Length = 209 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 63/254 (24%) Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 L + A++ E R L + + N ATD HRL + + + Sbjct: 5 KLSKHLKRAVSKFESRPILRCVHYDANGS-----IAATDSHRLLL-----------IENF 48 Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258 K + + +R + ++D +P ++IP Sbjct: 49 HNHNKEINQDIRTME---------------------------ILDAPYPELGHLIPNKAK 81 Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD--MGK-AIESMNVYY 315 ++++ +L + +++ + + + + K+ T + + G +N Sbjct: 82 SKIKI-TISLSVLLRAAKALNTSTDEIIVMKIEQGKITFTNLHDEKIYGSPVKIEVNAQV 140 Query: 316 NECPMDICFNYKYLLEI----IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 M + N +Y+++ +D + D+ V L S N + K+ Sbjct: 141 VGESMKLGVNSRYIIDACEFLLDA--KERYAVDDTVIHLYSENKPFTLEIKEG------- 191 Query: 372 NKVNAFYVLMPMRI 385 Y++ P+R+ Sbjct: 192 ---KYLYLVTPVRL 202 >gi|253581730|ref|ZP_04858954.1| predicted protein [Fusobacterium varium ATCC 27725] gi|251836079|gb|EES64616.1| predicted protein [Fusobacterium varium ATCC 27725] Length = 227 Score = 64.9 bits (157), Expect = 2e-08, Method: Composition-based stats. Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 38/232 (16%) Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215 LN I H E V +D +RL V + I I + I + ++K Sbjct: 30 ALNRIHLHKGE------IVCSDSYRLGVYKSSIDTDITCSI-------PLDIIKALKAAK 76 Query: 216 DSSVKVS-LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 + ++ ++ + + L + + + +P Y ++I + ++ + ++ Sbjct: 77 IKQIGIAGMAGTDVELKTDKFRIQFKQNTLAYPKYDDLISIKPVVKAKIKTAEFLRKLEG 136 Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334 +S V L + D L ++ ++ + S+ + + IC N KYL + Sbjct: 137 AKNVSDK----VVLKVYKDCLEISAES-ETDNYHNSIEAKADGE-IKICLNNKYLATYLK 190 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP--MR 384 V ++ V S++S + I ++ Y+LMP MR Sbjct: 191 -----RVKNEYVEIGFISTHSQIHIHEENM-----------YEYILMPCVMR 226 >gi|327198324|ref|YP_004306898.1| DnaN [Streptococcus phage Dp-1] gi|314912626|gb|ADT64017.1| DnaN [Streptococcus phage Dp-1] Length = 357 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 36/315 (11%), Positives = 108/315 (34%), Gaps = 29/315 (9%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60 M I + ++ +++ ++ K + ++ + + + + A + I + Sbjct: 1 MSIKFKTEELSKIVSQLNKLKPSK-LLEITNYWHIFGDGECVMFTAYDGSNFLRCIIDSD 59 Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 V++ + V A +V K +E+ L G+ + + E E Sbjct: 60 VEID--VIVKAEQFGKLVEKTTAATVTLVPEESSLKVI-----GNGEYNIDIVTEDEEYP 112 Query: 121 -----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175 ++ + L SS+ + A++ G + A+ Sbjct: 113 TFDHLLEDVSEENALTLKSSLFYGIANINDSAVSKSGADGIYTGFLLKGGK------AIT 166 Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD R+ + + K +++P + + I + + ++ ++++ S+ Sbjct: 167 TDIIRVCINPIK-----EKGLEMLIPYNLMSILASIPD--EKMYFWQIDDTTVYISSASV 219 Query: 236 SMSVRLIDG--EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292 + +L++G ++ + + + + + + +DR+ + +S + V+ Sbjct: 220 EIYGKLMEGMEDYEDVSQLDSIEFEDDAAIPTAEILSVLDRLVLFTSAFDKGTVEFLFLK 279 Query: 293 DKLCMTVDNPDMGKA 307 D+L + Sbjct: 280 DRLRIKTSTSSYEDI 294 >gi|311895841|dbj|BAJ28249.1| putative MerR family transcriptional regulator [Kitasatospora setae KM-6054] Length = 333 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 43/225 (19%) Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218 GIF + ED L VATD +RLAVA+ +++ A + ++++ Sbjct: 150 GIFL--DAEDGALHLVATDRYRLAVADCPAALDGPPASALLPTALADAARALLADAEEAE 207 Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278 +S + S+S + +FP+Y+ ++ L + LR Sbjct: 208 --LSFDGDHFAIRAAGRSLSGERVPADFPDYRRLLRHEPTHRLTLTAAELRA-------- 257 Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338 L + +T + + + N+ YLLE Sbjct: 258 ---------LPATDGSTTLTATPAHA------LPGTPAPTALLVHVNHDYLLEAAG---- 298 Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 +++V L + + IR ++ + F +LMP+ Sbjct: 299 ---TAEQLVLELGGPIAPLAIRFP---------SRADTFSLLMPI 331 >gi|213021785|ref|ZP_03336232.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. 404ty] Length = 57 Score = 64.5 bits (156), Expect = 3e-08, Method: Composition-based stats. Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 14/71 (19%) Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374 Y M+I FN Y+L++++ + + V L S SSV I Sbjct: 1 YGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQIEDA---------ASQ 46 Query: 375 NAFYVLMPMRI 385 +A YV+MPMR+ Sbjct: 47 SAAYVVMPMRL 57 >gi|54023099|ref|YP_117341.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] gi|54014607|dbj|BAD55977.1| putative transcriptional regulator [Nocardia farcinica IFM 10152] Length = 346 Score = 62.9 bits (152), Expect = 7e-08, Method: Composition-based stats. Identities = 30/235 (12%), Positives = 81/235 (34%), Gaps = 34/235 (14%) Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210 + L G+ +++ + + ATD +RL+ V + + S +V G + Sbjct: 140 DPEFPVLAGVLLEVDDTGVTV--TATDRYRLSTRSVAPRRGVERSWSAVVEA---GVLTA 194 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND--KELRVNCTNL 268 ++ + ++ E + + + S + I +FP+Y+ V+ + + Sbjct: 195 AVAETPGELVLAEDEGGVRIVTGAASRRLPGIAADFPDYRAVLAGLGPARTRVLLGRAP- 253 Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328 + V L ++ + + G ++ P+ + F+ + Sbjct: 254 ------LLAALEAATAPVPLVVAGAGVAL------GGPVPVTLPATVTGTPLRLAFDPRV 301 Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 L + ++ + E++ L + + V +R ++MP+ Sbjct: 302 LRPAV-----EDALGPELMLDLTAPDQPVVLRSATDGDLTT---------LVMPV 342 Score = 42.9 bits (100), Expect = 0.077, Method: Composition-based stats. Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 8/95 (8%) Query: 28 PVSCHVLLQANDGLLEIKASG-PEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGA 85 PV VLL+ +D + + A+ + P V+ S V A +L V + Sbjct: 144 PVLAGVLLEVDDTGVTVTATDRYRLSTRSVAPRRGVERSWSAVVEAGVLTAAVAETPGE- 202 Query: 86 QISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120 E+E G V I G ++ L +FP Sbjct: 203 --LVLAEDEGG--VRIVTGAASRRLPGIAA-DFPD 232 >gi|75761788|ref|ZP_00741723.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74490721|gb|EAO54002.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 114 Score = 61.8 bits (149), Expect = 2e-07, Method: Composition-based stats. Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 1/48 (2%) Query: 295 LCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEV 341 L ++ ++P++GK +E + + + I F+ KY+++ + + S E+ Sbjct: 2 LEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 49 >gi|226305007|ref|YP_002764965.1| MerR family transcriptional regulator [Rhodococcus erythropolis PR4] gi|226184122|dbj|BAH32226.1| putative MerR family transcriptional regulator [Rhodococcus erythropolis PR4] Length = 327 Score = 61.0 bits (147), Expect = 3e-07, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 11/153 (7%) Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ S L+ ++ FA+ E L G+ I+ D V TD R Sbjct: 97 IDSLPASGGVDIDSWDLRRALDAVLFAVNEESEFPILRGVHLDIH--DGVAAFVTTDQFR 154 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAVAEV + A S +VP R+L V ++ S + + +S Sbjct: 155 LAVAEVKV--HSALTVSAVVP----VAFARLLRDVAGVVTLTFSPRTVTASYPGGEVSSP 208 Query: 241 LI-DGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 LI DGEFP+++ I ++ + ++ +L + Sbjct: 209 LIEDGEFPDHR--ILREHNDAVELSGDHLAALL 239 >gi|399398|sp|P31861|DPO3B_RHOCA RecName: Full=DNA polymerase III subunit beta gi|250529|gb|AAB22385.1| DnaN=3' of GyrB [Rhodobacter capsulatus, SB1003, Peptide, 70 aa] Length = 70 Score = 60.6 bits (146), Expect = 4e-07, Method: Composition-based stats. Identities = 25/57 (43%), Positives = 35/57 (61%) Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227 L VATDGHRLA + + MP +IVPRK V E+ +L ++ + VS+SE+R Sbjct: 10 LRCVATDGHRLARIDAVLPEGANGMPGVIVPRKTVNELRNVLDDDEAQIAVSVSETR 66 >gi|312137809|ref|YP_004005145.1| DNA polymerase III beta chain/merr family transcriptional regulator [Rhodococcus equi 103S] gi|311887148|emb|CBH46457.1| putative DNA polymerase III beta chain/MerR family transcriptional regulator [Rhodococcus equi 103S] Length = 352 Score = 59.9 bits (144), Expect = 6e-07, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 27/255 (10%) Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S ++ + L++ +L V + A A E L GI + D + ATD + Sbjct: 111 SLPVQDRGSAVTLSARLLAEAVRQVRRAAAAEAEFPILTGILIEV--GDGAVVLTATDRY 168 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSM 237 RL+ + ++ + E+ I + S D++ + + + LS Sbjct: 169 RLSTRSLPAHTPDRAWTGVV----SASELDAIGAALSPDAAAILRPDSGAVDIATPGLSA 224 Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +++GE+P+Y+ ++ + L ++ V+L +S +L Sbjct: 225 RFAVLEGEYPDYRTMLDALPPARTRVVTRRDELF------AVAEGPVDDTVRLVGASGQL 278 Query: 296 CMTV-DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +V D P + + + + F LL + + V +V+ + + + Sbjct: 279 TASVRDGPPQA-----VAARVDGPDVTLTFRRGNLLAAL-----ETAVGPDVMLDISAPD 328 Query: 355 SSVFIRGKDKDSKNN 369 V R Sbjct: 329 LPVVFRSATDGDLTT 343 Score = 39.8 bits (92), Expect = 0.68, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 28 PVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKL-QDGA 85 P+ +L++ DG + + A+ T ++PA D + VSA L I L D A Sbjct: 146 PILTGILIEVGDGAVVLTATDRYRLSTRSLPAHTPDRAWTGVVSASELDAIGAALSPDAA 205 Query: 86 QISF 89 I Sbjct: 206 AILR 209 >gi|325676088|ref|ZP_08155770.1| transcriptional regulator [Rhodococcus equi ATCC 33707] gi|325553128|gb|EGD22808.1| transcriptional regulator [Rhodococcus equi ATCC 33707] Length = 353 Score = 59.9 bits (144), Expect = 7e-07, Method: Composition-based stats. Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 27/255 (10%) Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S ++ + L++ +L V + A A E L GI + D + ATD + Sbjct: 112 SLPVQDRGSAVTLSARLLAEAVRQVRRAAAAEAEFPILTGILIEV--GDGAVVLTATDRY 169 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSM 237 RL+ + ++ + E+ I + S D++ + + + LS Sbjct: 170 RLSTRSLPAHTPDRAWTGVV----SASELDAIGAALSPDAAAILRPDSGAVDIATPGLSA 225 Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295 +++GE+P+Y+ ++ + L ++ V+L +S +L Sbjct: 226 RFAVLEGEYPDYRTMLDALPPARTRVVTRRDELF------AVAEGPVDDTVRLVGASGQL 279 Query: 296 CMTV-DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354 +V D P + + + + F LL + + V +V+ + + + Sbjct: 280 TASVRDGPPQA-----VAARVDGPDVTLTFRRGNLLAAL-----ETAVGPDVMLDISAPD 329 Query: 355 SSVFIRGKDKDSKNN 369 V R Sbjct: 330 LPVVFRSATDGDLTT 344 Score = 39.8 bits (92), Expect = 0.71, Method: Composition-based stats. Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%) Query: 28 PVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKL-QDGA 85 P+ +L++ DG + + A+ T ++PA D + VSA L I L D A Sbjct: 147 PILTGILIEVGDGAVVLTATDRYRLSTRSLPAHTPDRAWTGVVSASELDAIGAALSPDAA 206 Query: 86 QISF 89 I Sbjct: 207 AILR 210 >gi|229490192|ref|ZP_04384039.1| transcriptional regulator, MerR family [Rhodococcus erythropolis SK121] gi|229322940|gb|EEN88714.1| transcriptional regulator, MerR family [Rhodococcus erythropolis SK121] Length = 339 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 11/153 (7%) Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 ++ S L+ ++ FA+ E L G+ I+ D V TD R Sbjct: 109 IDALPISGGVDIDSWDLRRALDAVLFAVNEESEFPILRGVHLDIH--DGVAAFVTTDQFR 166 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240 LAVAEV + A S +VP R+L V ++ S + + +S Sbjct: 167 LAVAEVTV--HSALTVSAVVP----VTFARLLRDVAGVVTLTFSARTVTASYPRGEVSSP 220 Query: 241 LI-DGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272 LI DGEFP+++ I + + ++ +L + Sbjct: 221 LIEDGEFPDHR--ILREHHNAVELSGDHLAALL 251 >gi|41057666|ref|NP_958120.1| gp15 [Burkholderia phage Bcep43] gi|40737653|gb|AAR89306.1| gp15 [Burkholderia phage Bcep43] Length = 193 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 11/109 (10%) Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVG 206 A ++IRYYLNGI L VATDGHR + + A + S+I+P A+ Sbjct: 16 AAKQDIRYYLNGILLEAAVNGD-LHIVATDGHRAFIGRIAGGATSWPEFTSLIIPTDAIK 74 Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 + V+++ + + S IDG FP+++ ++P Sbjct: 75 VAAKKGD-------VTVAPAGARYALGSTLFDA--IDGRFPDWRRIVPR 114 >gi|23752326|ref|NP_705641.1| gp15 [Burkholderia phage Bcep781] gi|23507193|gb|AAN38016.1| gp15 [Burkholderia phage Bcep781] Length = 193 Score = 59.1 bits (142), Expect = 1e-06, Method: Composition-based stats. Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 11/109 (10%) Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVG 206 A ++IRYYLNGI L VATDGHR + + A + S+I+P A+ Sbjct: 16 AAKQDIRYYLNGILLEAAVNGD-LHIVATDGHRAFIGRIAGGATSWPEFTSLIIPTDAIK 74 Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255 + V+++ + + S IDG FP+++ ++P Sbjct: 75 VAAKKGD-------VTVAPAGARYALGSTLFDA--IDGRFPDWRRIVPR 114 >gi|2126505|pir||PC4178 DNA-directed DNA polymerase (EC 2.7.7.7) III beta chain - Synechococcus sp. (fragment) Length = 47 Score = 58.7 bits (141), Expect = 1e-06, Method: Composition-based stats. Identities = 11/47 (23%), Positives = 22/47 (46%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKAS 47 MK+ ++++ L R + + PV +VLL A+ G + + Sbjct: 1 MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLT 47 >gi|254259653|ref|ZP_04950707.1| gp15 [Burkholderia pseudomallei 1710a] gi|254218342|gb|EET07726.1| gp15 [Burkholderia pseudomallei 1710a] Length = 196 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 6/132 (4%) Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEIL 209 +IRYYLNGI +E++ ++ +ATDGHR AV V + I+PR V + Sbjct: 20 NDIRYYLNGICIEAHEKETRV--IATDGHRAAVVRVSAENVDVTPRTRFIIPRATVESMK 77 Query: 210 RILSSKDSSVKVSL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCT 266 ++ + + + ++G FP+Y+ VIP ++ K + N Sbjct: 78 VSKAALKHPIAIEGPNDSGEYRATGGFGVAIFQAVEGVFPDYRRVIPETTSGKLAQYNPA 137 Query: 267 NLRQAVDRVSIM 278 L ++ Sbjct: 138 YLADMAKAAELL 149 >gi|33322979|gb|AAQ07226.1|AF496534_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp. lactis] Length = 67 Score = 58.7 bits (141), Expect = 2e-06, Method: Composition-based stats. Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%) Query: 15 GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS----VDVCGSITVS 70 + + + IP+ + L + L + S +I I + P S V+ GSI V+ Sbjct: 1 NSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVSDDLRVESTGSIVVT 60 Query: 71 AHLLYDI 77 AHL +I Sbjct: 61 AHLFSEI 67 >gi|239983464|ref|ZP_04705988.1| putative transcriptional regulator [Streptomyces albus J1074] gi|291455287|ref|ZP_06594677.1| conserved hypothetical protein [Streptomyces albus J1074] gi|291358236|gb|EFE85138.1| conserved hypothetical protein [Streptomyces albus J1074] Length = 357 Score = 57.9 bits (139), Expect = 3e-06, Method: Composition-based stats. Identities = 49/260 (18%), Positives = 85/260 (32%), Gaps = 36/260 (13%) Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 + VL + VE+ A A E L G HI L ATD +RL+ + Sbjct: 121 TVKGPVLADAVEQVLTATAHEPGMAVLGG--LHIEAGGEALALTATDRYRLSTRTLAPAR 178 Query: 191 QIAKMPSIIVPRKAVG----EILRILSSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGE 245 + S V + E+ R V+V I L + R + Sbjct: 179 PAEQSWSGTVDGDDLRAAAPEVRRTP-----LVRVEAVPHGIWLRLPGREDRHCRTLPER 233 Query: 246 FPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 FP+++ ++ V L +A++ V L +S + TV PD Sbjct: 234 FPDHRQLLASLGEVTTRATVPKEPLLRALE------EHPGDHVTLRVSGHAV--TVGPPD 285 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363 ++ P++I F L + +V+ D +RG D Sbjct: 286 ARHPGTTVAATVRGEPLEIRFATTTLYPALSTAIGPDVMLD--------------LRGHD 331 Query: 364 KDSKNNKDNKVNAFYVLMPM 383 + ++ + + MP+ Sbjct: 332 QPVTLRSADRGDLTTLAMPV 351 Score = 37.1 bits (85), Expect = 4.1, Method: Composition-based stats. Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 2/73 (2%) Query: 4 TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPA-SV 61 TV+ + + + + + V + ++A L + A+ + PA Sbjct: 121 TVKGPVLADAVEQVLTATAHEPGMAVLGGLHIEAGGEALALTATDRYRLSTRTLAPARPA 180 Query: 62 DVCGSITVSAHLL 74 + S TV L Sbjct: 181 EQSWSGTVDGDDL 193 >gi|273810561|ref|YP_003344942.1| gp7 [Sodalis phage SO-1] gi|258619846|gb|ACV84099.1| gp7 [Sodalis phage SO-1] Length = 172 Score = 57.6 bits (138), Expect = 3e-06, Method: Composition-based stats. Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 16/154 (10%) Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200 ++ AT ++RYYLNG+FF VATDGHRL A + + S IV Sbjct: 11 LKAAMMCAATNDVRYYLNGVFFDEEG-----FIVATDGHRLFCG----SAVVPEGESKIV 61 Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260 K + D + + + ++ V ++DG FP+++ + K Sbjct: 62 AIKGRLPTKFEYCNIDGTSAAFFDSKDVLIG----TIPVEIVDGRFPDWRRFTSFDSAKV 117 Query: 261 --LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 + L A + + ++KL Sbjct: 118 EAIGFAGAYLSDACKIAKLF-DRKFDSLKLEFQG 150 >gi|261883858|ref|ZP_06007897.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. venerealis str. Azul-94] Length = 100 Score = 57.2 bits (137), Expect = 5e-06, Method: Composition-based stats. Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 17/109 (15%) Query: 279 SSVRIQAVKLS-LSSDKLCMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDN 335 S R + L L ++ ++ + + G+ E+ + E I + ++LL+ + Sbjct: 4 SEWRNNNILLEVLDETRIKISSNGTEFGRIEETQEIVKRSGEGDFRITLDARFLLDALKV 63 Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 I ++ V + I D + +++ P+R Sbjct: 64 ID-----EESVKITYSGDMKPIMIEPIDN---------FDYLHLISPVR 98 >gi|148927275|ref|ZP_01810845.1| DNA polymerase III, beta chain [candidate division TM7 genomosp. GTL1] gi|147887334|gb|EDK72788.1| DNA polymerase III, beta chain [candidate division TM7 genomosp. GTL1] Length = 241 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 14/94 (14%) Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L + +G+ + + N +YLLE + I + FR Sbjct: 161 EKGTLAIHSIASQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSS-----ITFRF 214 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D ++ +++MP++ Sbjct: 215 SGKLSPCRLTATDDEA--------TYQHIIMPLK 240 >gi|48697221|ref|YP_024951.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B] gi|47779027|gb|AAT38390.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B] Length = 171 Score = 56.8 bits (136), Expect = 6e-06, Method: Composition-based stats. Identities = 27/150 (18%), Positives = 64/150 (42%), Gaps = 8/150 (5%) Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDS 217 +F + +L VATDGH+ V + + + +I+P +A+ + S Sbjct: 1 MFIEATPYETRL--VATDGHKAGVFRYAVENDVPAGETAEVIIPHEAIDRLKAAKSDLVH 58 Query: 218 SVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275 V++ + + + L ++ + +DG +P+Y+ + P + +L + Sbjct: 59 FVRLEVEDRQCSLCVDAMGARIQFVAVDGRYPDYRRIFPKTMSGVPGQYRADLLMDFAKA 118 Query: 276 SIMSSVRIQAV--KLSLSSDKLCMTVDNPD 303 + + + AV +L+ + D ++ D+ D Sbjct: 119 AKLLIKKSPAVMPRLTYNGDSARVSFDDYD 148 >gi|239927510|ref|ZP_04684463.1| putative transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291435853|ref|ZP_06575243.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] gi|291338748|gb|EFE65704.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672] Length = 356 Score = 55.6 bits (133), Expect = 1e-05, Method: Composition-based stats. Identities = 42/272 (15%), Positives = 93/272 (34%), Gaps = 36/272 (13%) Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179 S + + L VL + +E+ A E L + +E + L ATD + Sbjct: 109 SLADVPSLPVAALKGPVLADAIEQVLAAAVREPGMPVLGALRVEATQEAVTL--TATDRY 166 Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL-S 236 RL+ + A + V E+ ++ + + V+V + L + Sbjct: 167 RLSTRTLVPAEAGATAWAATVSG---DELRAAVADIRRSALVRVEATPHGCRLRMADRGD 223 Query: 237 MSVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 RL+ EFP+++ ++ + V+ L++A++ + + V L ++ Sbjct: 224 RHCRLLSEEFPDHRLMLASLPEVTTRVTVSKGLLQRALE------EIPGERVTLRVTRRG 277 Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI--SSDEVVDDEVVFRLDS 352 L + + + + + I F + + + + +V+ L Sbjct: 278 LSVLTTDGEHPGV--PLAAAVTGRGLRISF-------ELTTLYPAVSTAIGPDVMLDLRG 328 Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 + IR D+ + MP+R Sbjct: 329 PDQPATIRSADRGDLTT---------LAMPVR 351 Score = 37.9 bits (87), Expect = 2.9, Method: Composition-based stats. Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 1/51 (1%) Query: 9 DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIP 58 + + + R+ +PV + ++A + + A+ + +P Sbjct: 125 VLADAIEQVLAAAVREPGMPVLGALRVEATQEAVTLTATDRYRLSTRTLVP 175 >gi|126207974|ref|YP_001053199.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae L20] gi|126096766|gb|ABN73594.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae serovar 5b str. L20] Length = 136 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%) Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 + ++ ++R LNG++F++ C AT+GH + ++ A K Sbjct: 9 DIDVLYLKAASLFAGKNDVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPK 64 Query: 195 MPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250 I+P + + +IL I ++V+ ++ I + +++ + I+G+FPN Sbjct: 65 RKGFIMPNELIKQILLIKPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLC 124 Query: 251 NVIP-CSNDKE 260 V P ++ + Sbjct: 125 AVYPLKESNNK 135 >gi|332668941|ref|YP_004451949.1| regulatory protein MerR [Cellulomonas fimi ATCC 484] gi|332337979|gb|AEE44562.1| regulatory protein MerR [Cellulomonas fimi ATCC 484] Length = 327 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 46/258 (17%) Query: 127 VYSFELASSVLKNLVERTHFAMATEEIR-YYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 +A+ L V A+ + R L G+ H++ L+L V D RLAVA Sbjct: 111 PARCVVAADALVGAVGAVRHAVGAADARWPGLAGVLLHLDGATLRL--VGCDRSRLAVAS 168 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245 V + ++ P + + V + +E L + + G Sbjct: 169 VPVAEPSGPPVRVLAPPAFLDALTAATLPASGPVTLHPH------RLEVLGRTSAALAGA 222 Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305 +P+Y+ ++P S + L +AV + VR+ +++L+ Sbjct: 223 YPDYERLLPPSGLPAATMASGALTEAVVGAGDVVVVRLDGGRVALAP------------- 269 Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 + ++ +LL+ + + + V LD +++ + D+ Sbjct: 270 --------PRPGDTL--GYSRSFLLDAVRAARA-----EHVALSLDDERAALGVSPADRP 314 Query: 366 SKNNKDNKVNAFYVLMPM 383 + ++MP+ Sbjct: 315 ADVG---------LVMPV 323 >gi|295835505|ref|ZP_06822438.1| conserved hypothetical protein [Streptomyces sp. SPB74] gi|197698590|gb|EDY45523.1| conserved hypothetical protein [Streptomyces sp. SPB74] Length = 358 Score = 55.2 bits (132), Expect = 2e-05, Method: Composition-based stats. Identities = 43/262 (16%), Positives = 88/262 (33%), Gaps = 40/262 (15%) Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 L VL + VE+ A A E L G+ + E + L ATD +RL+ + Sbjct: 115 TLKGPVLADAVEQILTATAHEPGMPVLAGLRVEVGPEAIGL--TATDRYRLSTRTLVPPE 172 Query: 191 QIAKMPSIIVP----RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGE 245 + + + R AV E+ R + V++ + L + RL+ + Sbjct: 173 PPPREWAGTLDGDDLRAAVTEVRR-----GARVRLEAVPHGVRLRMPGREDRHCRLLAED 227 Query: 246 FPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303 FP+++ ++ V L +A++ + V L + + + + + Sbjct: 228 FPDHRLMLGSLGEATTRATVPKNLLLRALE------EHPGEHVVLCVDGHGVSVRPVDGE 281 Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS--DEVVDDEVVFRLDSSNSSVFIRG 361 + P+ + F + + + +V+ L + V IR Sbjct: 282 HPGV--PLPATVTGEPLRVRF-------AMTTLHPAVSTALGPDVMLDLRGDDRPVTIRS 332 Query: 362 KDKDSKNNKDNKVNAFYVLMPM 383 D+ + MP+ Sbjct: 333 ADRGDLTT---------LAMPV 345 >gi|148927258|ref|ZP_01810829.1| DNA polymerase III, beta chain [candidate division TM7 genomosp. GTL1] gi|147887344|gb|EDK72797.1| DNA polymerase III, beta chain [candidate division TM7 genomosp. GTL1] Length = 97 Score = 54.5 bits (130), Expect = 3e-05, Method: Composition-based stats. Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 14/94 (14%) Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 L + +G+ + + N +YLLE + I + FR Sbjct: 17 EKGTLAIHSIASQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSS-----ITFRF 70 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 S + D ++ +++MP++ Sbjct: 71 SGKLSPCRLTATDDEA--------TYQHIIMPLK 96 >gi|2529425|gb|AAB81129.1| DNA polymerase III beta subunit [Mycobacterium bovis BCG] Length = 58 Score = 54.1 bits (129), Expect = 3e-05, Method: Composition-based stats. Identities = 9/44 (20%), Positives = 17/44 (38%) Query: 3 ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKA 46 + R + + + + + +PV VLL +D L I Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISG 58 >gi|228911496|ref|ZP_04075289.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] gi|228848145|gb|EEM93006.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200] Length = 127 Score = 53.3 bits (127), Expect = 6e-05, Method: Composition-based stats. Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 5/102 (4%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58 M+ T+ R+ +E L A ++ KN +P VLL N + + S + + Sbjct: 15 MQFTINRTLFIEKLEKASVTVDVKNPMPALQGVLLDCNSKGMILMDSDGTEAVTLVTRFN 74 Query: 59 AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT 97 + G + +A + ++K + K NEL Sbjct: 75 VNSGDCTEPGKMLFAAAPVLKTIKKFKSEFIGLEHKNNELKI 116 >gi|313611873|gb|EFR86330.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL F2-208] Length = 40 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 11/40 (27%), Positives = 20/40 (50%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG 40 MK +ER +++ + R I + TIP+ + + ND Sbjct: 1 MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDE 40 >gi|288965530|pdb|3K4X|A Chain A, Eukaryotic Sliding Clamp Pcna Bound To Dna Length = 798 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 124/334 (37%), Gaps = 50/334 (14%) Query: 54 TGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 +I +D +T A L DI++ L D I E + ++ G F+L Sbjct: 465 ETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLA 524 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 P +E + ++ E + F + + + + F E+ + Sbjct: 525 -------PKFNDEGSNSQASNSGALEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDG--I 575 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSI---IVPRKAVGEILRILSSKDSSVKVSL----S 224 A A D R+ + ++I + + + + + +IL +++ ++L + Sbjct: 576 IAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNT 635 Query: 225 ESRIHLNIESL------SMSVRL--IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 I L E S++L ID +F + + D L + + + V +S Sbjct: 636 PDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEEL---QYDSTLSLPSSEFSKIVRDLS 692 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN------------ECPMDICF 324 +S ++ + ++ + + D D+G + + + + P+D+ F Sbjct: 693 QLSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTF 747 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 KYLL+II S + D V RL S ++F Sbjct: 748 GAKYLLDIIKGSS----LSDRVGIRLSSEAPALF 777 Score = 52.2 bits (124), Expect = 1e-04, Method: Composition-based stats. Identities = 60/334 (17%), Positives = 124/334 (37%), Gaps = 50/334 (14%) Query: 54 TGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111 +I +D +T A L DI++ L D I E + ++ G F+L Sbjct: 198 ETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLA 257 Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171 P +E + ++ E + F + + + + F E+ + Sbjct: 258 -------PKFNDEGSNSQSNGSGALEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDG--I 308 Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSI---IVPRKAVGEILRILSSKDSSVKVSL----S 224 A A D R+ + ++I + + + + + +IL +++ ++L + Sbjct: 309 IAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNT 368 Query: 225 ESRIHLNIESL------SMSVRL--IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276 I L E S++L ID +F + + D L + + + V +S Sbjct: 369 PDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEEL---QYDSTLSLPSSEFSKIVRDLS 425 Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN------------ECPMDICF 324 +S ++ + ++ + + D D+G + + + + P+D+ F Sbjct: 426 QLSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTF 480 Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 KYLL+II S + D V RL S ++F Sbjct: 481 GAKYLLDIIKGSS----LSDRVGIRLSSEAPALF 510 >gi|188581946|ref|YP_001925391.1| hypothetical protein Mpop_2701 [Methylobacterium populi BJ001] gi|179345444|gb|ACB80856.1| hypothetical protein Mpop_2701 [Methylobacterium populi BJ001] Length = 384 Score = 51.4 bits (122), Expect = 2e-04, Method: Composition-based stats. Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 22/139 (15%) Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 +V +L +T++ R+YL G++ + VATDGHR+ V A Sbjct: 4 NVSADLFRIVAAYRSTDDSRFYLQGVYVQPHP-CGGAYLVATDGHRMLVVY---DASAEC 59 Query: 195 MPSIIV----------PRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESLSMSV- 239 + I+ K V + R +++D +++ E + ++ + + Sbjct: 60 TEAAIIACPSDLLRAAKSKPVRQRRRGTAAQDGEPMGPRMLAVIEDQAIISCDGFEVHRG 119 Query: 240 ---RLIDGEFPNYQNVIPC 255 +IDG FP+++ +P Sbjct: 120 GAPAVIDGTFPDWRRTVPT 138 >gi|288561615|ref|YP_003429021.1| hypothetical protein BpOF4_20669 [Bacillus pseudofirmus OF4] gi|288548247|gb|ADC52129.1| hypothetical protein BpOF4_20669 [Bacillus pseudofirmus OF4] Length = 368 Score = 51.0 bits (121), Expect = 3e-04, Method: Composition-based stats. Identities = 59/345 (17%), Positives = 127/345 (36%), Gaps = 38/345 (11%) Query: 38 NDGLLEIKASGPEIEITGAIPASVDVCGSI--TV-SAHLLYDIVRKLQDGAQISFFKENE 94 + + + + E+ I + A V +I T+ A L I L + + Sbjct: 36 KENKVTLFFNSEEVCIKRELHAEVTKEATISTTLREASLKASI---LPKEQTVGVIPDKG 92 Query: 95 LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI- 153 + L + E+ F S E E +S + L+ A Sbjct: 93 ILQFCWGRSSHVKMQLITETEASF-SVPEV--TSWVEWGASHFQGLIAALFPFCAVSGSA 149 Query: 154 ----RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209 GI I ++ ++ ATDG + A+ + + + +P +A+ + Sbjct: 150 PAKKSPVTMGIN--IFKDKKEIMVKATDG-QTAIRVMPKDVDWFEKTTTSIPIRALLALT 206 Query: 210 RILSSKDSSVKVSLSESR--IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL--RVNC 265 ++ SK VK+ L+E + + ++ + VRL+ G++PN + D + Sbjct: 207 EVIDSK-GIVKLGLNEDKSLLIVSSSNTVSVVRLLIGQYPNLDPAFVSTTDAGAIWTFDR 265 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPM-DIC 323 L VS + + + +KL K+ +TVD G + + + + D C Sbjct: 266 LELLSLARSVSKL-NGKEPILKLQKEGSKVFGLTVD----GSLKQQIGAFGEGDNVNDFC 320 Query: 324 FNYKYLLEIIDNISSDEVV--DDEVVFRLDSSNSSVFIRGKDKDS 366 N + N+ ++ +E++F ++ + + + ++ +S Sbjct: 321 INAR-------NVEKAAILYRSEELIFTQRTNLAPMTVTSEEDES 358 >gi|296121344|ref|YP_003629122.1| hypothetical protein Plim_1086 [Planctomyces limnophilus DSM 3776] gi|296013684|gb|ADG66923.1| hypothetical protein Plim_1086 [Planctomyces limnophilus DSM 3776] Length = 438 Score = 50.6 bits (120), Expect = 4e-04, Method: Composition-based stats. Identities = 56/337 (16%), Positives = 110/337 (32%), Gaps = 61/337 (18%) Query: 67 ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126 +TV A LL D+ D ++ + +L + G F + E E+ E Sbjct: 79 VTVPATLLRDVQGTTPD--IVTIEVDQDLIKARWTTSG---FEM----EREYQRMDPPEG 129 Query: 127 VYSFELASSVLK-----NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181 + V ++R RY L+ + ++GH+L Sbjct: 130 WPRAIWSELVEAPPGFLAALQRVMSLRDPSIKRYSLSCV----QYSAQHQRLAGSNGHQL 185 Query: 182 AVAE---VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 + + + + I A+ E R S+V ++ + + + + S + Sbjct: 186 LIWNGLPLPWSDDLLLAGTDIF---ALPEWERA-----STVHLARTPTDLVVQSGSWVVG 237 Query: 239 VRL-IDGEFPNYQNVIPCSNDKELRVNCT--------NLRQAVDRVSIMSSVRIQ-AVKL 288 +++ +G +P V+P ++ ++ L + + + I S RI V + Sbjct: 238 LKIETEGRYPLIDRVVPQLSETASQMELHPVDACRLIELLEHLPQAQITSEERIHQPVTV 297 Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEV 346 LS + + +A E I +YLL + Sbjct: 298 DLSQAFPVIRIQTRCAARATEIQLTRSTCWGTSGAISLETRYLLSALK--------MGFQ 349 Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 SS S+V + + AFYV+MP+ Sbjct: 350 QLGFQSSESAVRLDTPE------------AFYVIMPL 374 >gi|160898840|ref|YP_001564422.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1] gi|160364424|gb|ABX36037.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1] Length = 174 Score = 50.2 bits (119), Expect = 5e-04, Method: Composition-based stats. Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 28/165 (16%) Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194 + +++ A A +++RYYL G+ VATDG RL A Sbjct: 2 HIKTAILKAVSLAAAKKDLRYYLKGVLI------NDRHIVATDGSRLHAARHGAEWLHGP 55 Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254 I+P + L+ S S+ + + +DG FP Y+ V+P Sbjct: 56 R---IIPIDNLLLALKKKSDLTEITLCSVGD----------VIYAP-VDGVFPAYERVLP 101 Query: 255 C-----SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 + +N L A + + + + L+ S Sbjct: 102 RGTEPEQCPGVMNINPKYLADACEAIKLATGESHT---LAFSGGN 143 >gi|266619504|ref|ZP_06112439.1| putative DNA polymerase III, beta chain [Clostridium hathewayi DSM 13479] gi|288868990|gb|EFD01289.1| putative DNA polymerase III, beta chain [Clostridium hathewayi DSM 13479] Length = 191 Score = 49.5 bits (117), Expect = 0.001, Method: Composition-based stats. Identities = 24/161 (14%), Positives = 67/161 (41%), Gaps = 11/161 (6%) Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 + K +++ T + + + + I+ ++ + A A +GHR+++ ++V Sbjct: 7 AGEFKRIIDNTKRFVGDGTLSELMRWTYLEIDAKEKVIRATALEGHRISIEYAELVEADE 66 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 I P ++ +D+ ++ +S SR+++ + M +G++ ++ Sbjct: 67 SFTCYIRPTIP------KITKRDNYAELEVSNSRLYVQVGESIMGYVQPEGQYYPVDKIL 120 Query: 254 ----PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290 + +N L+ A+D +S S + + K+ + Sbjct: 121 KEYQEKEKMITIGINAKYLKDALDSISTYDSDK-KMAKIDI 160 Score = 46.4 bits (109), Expect = 0.007, Method: Composition-based stats. Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 18/143 (12%) Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI---- 308 I + + + + + + R +L +S+ +L + V MG Sbjct: 54 ISIEYAELVEAD-ESFTCYIRPTIPKITKRDNYAELEVSNSRLYVQVGESIMGYVQPEGQ 112 Query: 309 ----ESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362 + + Y E + I N KYL + +D+IS+ + + S S V IR Sbjct: 113 YYPVDKILKEYQEKEKMITIGINAKYLKDALDSISTYDSDKKMAKIDIYDSVSPVIIRTG 172 Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385 K + N +++P R+ Sbjct: 173 RKGERENLK-------IVLPARL 188 >gi|218679945|ref|ZP_03527842.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 894] Length = 29 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 13/29 (44%), Positives = 22/29 (75%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQAND 39 ++ L H R++ER+NTIP+ +VLL+A+ Sbjct: 1 MKSLNHVHRVVERRNTIPILSNVLLKADG 29 >gi|21702598|gb|AAM75994.1|AF481103_4 unknown [Candidatus Tremblaya princeps] Length = 208 Score = 48.3 bits (114), Expect = 0.002, Method: Composition-based stats. Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 13/194 (6%) Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232 + DG R++ A + + VP + R+L V++ + + Sbjct: 4 CASFDGSRMSCAAAPCRDGWSNDCAA-VPVDTARSVARLLGHG-GIVRMYRLGGVLGIAF 61 Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292 ++ RL D + V+ + L + R +I+ RI+ + + ++ Sbjct: 62 GQTEVACRLSDAYSMDAGFVLARRYVFAFCLVRRRLESILRRATILMENRIRDLSILVAP 121 Query: 293 DKLCMTVDNPDMGKAIESM-NVYYN----ECPMDICFNYKYLLEIIDN----ISSDEVVD 343 L + N K E + N + + N ++ +++ + + S V Sbjct: 122 GLLLVRSSNTVREKMEEVIVPAGLNYGMLGSELIV--NADWVRDVLTDACPYLVSFNVCT 179 Query: 344 DEVVFRLDSSNSSV 357 D + L + V Sbjct: 180 DRLSVMLAGHAAPV 193 >gi|146329940|ref|YP_001210248.1| BcepGomrgp28 [Burkholderia phage BcepGomr] gi|145321116|gb|ABP63599.1| BcepGomrgp28 [Burkholderia phage BcepGomr] Length = 327 Score = 47.9 bits (113), Expect = 0.002, Method: Composition-based stats. Identities = 46/308 (14%), Positives = 101/308 (32%), Gaps = 33/308 (10%) Query: 11 LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70 L+ L + RK+ + V H +Q I I + + +D Sbjct: 2 LDALKFVKGAVARKDAVAVLTHFRIQ----NRYIMGYNGLIALGHPLELELDCQPKAA-P 56 Query: 71 AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130 + K ++ +++ ++I G+ ++ FP E Sbjct: 57 FLKAIEACEKREEQVKMALT----ATGRLSIKCGNFRANVEC-SPDAFPDMGAEGAELPV 111 Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190 L ++ +A + + + GI F A AT+ + Sbjct: 112 SGP---LLPAIKALAPMIAEDASKPWARGILFREGS------AFATNNVVIGQYWH---- 158 Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDGEFPNY 249 + + +P + V E+LRI K V + + + + + + +L+ +P+ Sbjct: 159 GVNFGFDLNIPEECVRELLRI---KQEPVAIRATATSVTFRYSNGAFIRSQLLSTAWPDV 215 Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309 V+ + V+ R D + + R K+ + S ++ T D+G ++E Sbjct: 216 SRVLDRPCN-PAPVDPALFRALDDLRAYVDGSR----KVYMDSGRV-FTHRADDVGASVE 269 Query: 310 SMNVYYNE 317 + Y Sbjct: 270 LPFIQYPG 277 >gi|146319852|ref|YP_001199563.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33] gi|145690658|gb|ABP91163.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33] Length = 68 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 14/79 (17%) Query: 307 AIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365 E ++ V + + I FN YL+E + +S ++V SS + ++ Sbjct: 1 MNEELDTVEVSGEDLVISFNPTYLIEALKATTS-----EQVKISFISSVRPFTLIPNNE- 54 Query: 366 SKNNKDNKVNAFYVLMPMR 384 + ++ P+R Sbjct: 55 -------GEDFIQLVTPVR 66 >gi|330814518|ref|YP_004362693.1| DNA polymerase III subunit beta [Burkholderia gladioli BSR3] gi|327374510|gb|AEA65861.1| DNA polymerase III subunit beta [Burkholderia gladioli BSR3] Length = 267 Score = 47.9 bits (113), Expect = 0.003, Method: Composition-based stats. Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 4/117 (3%) Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP-SII 199 ++ + A ++R++LNG+ + +L VATDG + ++ + ++ Sbjct: 48 LKAVQLSAAINDVRHFLNGVHLEATRNETRL--VATDGSMMVAFRAAAANELEQSITTLT 105 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256 VP + V ++ + D + + + R + L + + G FP+Y+ ++ Sbjct: 106 VPNEVVKQVRPAKGASDV-LTIEIEGWRYTMVFGQLRIGFEPVAGAFPDYRRIVATK 161 >gi|187939822|gb|ACD38962.1| hypothetical protein PACL_0722 [Pseudomonas aeruginosa] Length = 224 Score = 47.2 bits (111), Expect = 0.005, Method: Composition-based stats. Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 17/137 (12%) Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193 + + + MA ++RYYLNGI + L +AT+GH + V A Sbjct: 5 ARAKAHYLAAVSLFMAHNDVRYYLNGISIEPASQGGVL-LIATNGHHIGVMHDP--DGWA 61 Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKV---SLSESRI--------HLNIESLSMSVR-- 240 II P KA+ L+ ++ + + +S+S + ++ Sbjct: 62 SNKIIISPSKALVAGLKKRNAGTAFIYERAGVISDSDWPAPDDVKQFAPFDPGTLISAQL 121 Query: 241 -LIDGEFPNYQNVIPCS 256 L+DG++P+++ IP Sbjct: 122 ELVDGKYPDWRRPIPAQ 138 >gi|34764153|ref|ZP_00145021.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] gi|27886071|gb|EAA23379.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp. vincentii ATCC 49256] Length = 60 Score = 46.0 bits (108), Expect = 0.009, Method: Composition-based stats. Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 13/66 (19%) Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 + I N KYLLE I NIS ++ E++ SNS+V + KD D Y+ Sbjct: 6 LKISLNSKYLLEFIRNISKEK----ELILEFMYSNSAVKVYEKDNDE---------YIYI 52 Query: 380 LMPMRI 385 LMP+ + Sbjct: 53 LMPLAL 58 >gi|330949283|gb|EGH49543.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str. 1704B] Length = 43 Score = 46.0 bits (108), Expect = 0.010, Method: Composition-based stats. Identities = 17/43 (39%), Positives = 27/43 (62%) Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219 DGHRLA+ + + A +IVPRK + E+ R+L+ +D +V Sbjct: 1 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTV 43 >gi|283781178|ref|YP_003371933.1| hypothetical protein Psta_3409 [Pirellula staleyi DSM 6068] gi|283439631|gb|ADB18073.1| hypothetical protein Psta_3409 [Pirellula staleyi DSM 6068] Length = 482 Score = 46.0 bits (108), Expect = 0.011, Method: Composition-based stats. Identities = 52/369 (14%), Positives = 114/369 (30%), Gaps = 37/369 (10%) Query: 3 ITVERSDILELLGHACRII-ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61 I + R + + L +++ + IP +A L I G + P Sbjct: 2 IQISR-LLAKQLRSMVKMLFPGRGPIPALA---FRAGQDGLFIDVQGANQALRYHDPQPR 57 Query: 62 DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES-EFPS 120 + + V ++L D+ + + ++ LG + + S + P Sbjct: 58 EQQ-HLLVPFNVLEDVQGSKPEPVYLDSRRDGVLGANWEDRGIVRDLEYDAPESSADAPP 116 Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180 +S + + + + E RY L I E ATDG + Sbjct: 117 FPTLPETFSENPPALL--TALREAYETTDAESSRYALASIQVRGREG----VIAATDGRQ 170 Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS-LSESRIHLNIESLSMSV 239 L + ++ + + L + D V+V + + I S + Sbjct: 171 L----LKQSGFTFGFDEDLLLCQTKLFASKHLPA-DQPVRVGKSGDKMVVFQIGPWSYWL 225 Query: 240 RLIDGEFPNYQNVIPCSNDKELRV-----NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294 +++G +P+ +P + + + L + + R+ S + + L + + Sbjct: 226 PVVEGRYPDVDRTVPAPGHSKATLQLGSTDAKFLTENLHRLP--SGTTNRELTLDV-NGH 282 Query: 295 LCMTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352 + + PD + E + N + +C + +YL L Sbjct: 283 VVLRASAPDTLRPTEMVLRNSSKRGDDLLVCTDRQYLARAAR--------LGFTEIELPD 334 Query: 353 SNSSVFIRG 361 + S R Sbjct: 335 NTSPAVARD 343 >gi|4572642|emb|CAB40111.1| putative DnaN protein [Thermus thermophilus] Length = 49 Score = 45.6 bits (107), Expect = 0.013, Method: Composition-based stats. Identities = 12/48 (25%), Positives = 24/48 (50%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG 48 M ITV + + + L RI+ ++ P+ ++ L A +G L + + Sbjct: 1 MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTN 48 >gi|228908421|ref|ZP_04072264.1| DNA polymerase sliding clamp subunit (PCNA ) [Bacillus thuringiensis IBL 200] gi|228851212|gb|EEM96023.1| DNA polymerase sliding clamp subunit (PCNA ) [Bacillus thuringiensis IBL 200] Length = 60 Score = 45.2 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 14/69 (20%) Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375 E ++I F+ +++++ + I ++ + S + I G ++ + Sbjct: 4 GEKQLNISFDGRFMVDALRAIK-----EETITLSFGGSMRPILIEGGEQSA--------- 49 Query: 376 AFYVLMPMR 384 A +++ P+R Sbjct: 50 AVHLISPVR 58 >gi|77414463|ref|ZP_00790613.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515] gi|77159473|gb|EAO70634.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515] Length = 64 Score = 45.2 bits (106), Expect = 0.017, Method: Composition-based stats. Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 13/73 (17%) Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371 V ++I FN YL+E + + S + V R S + + Sbjct: 3 TVSLKGDSLNISFNPTYLIESLKAVKS-----ETVTIRFISPVRPFTLTPGED------- 50 Query: 372 NKVNAFYVLMPMR 384 + ++ P+R Sbjct: 51 -TEDFIQLITPVR 62 >gi|83596025|gb|ABC25383.1| DNA polymerase IIIb subunit [uncultured marine bacterium Ant39E11] Length = 58 Score = 45.2 bits (106), Expect = 0.018, Method: Composition-based stats. Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 10/66 (15%) Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 M+I FN +++ E+++N++S D+VV L + N + + + + ++ + + Sbjct: 1 MEIGFNSRFIAEMLNNLTS-----DDVVMELSAPNRAGLLFPE-----SGLEDGESILML 50 Query: 380 LMPMRI 385 +MP+ + Sbjct: 51 VMPVML 56 >gi|39879|emb|CAA31271.1| dnaG protein (AA 1 - 30) [Bacillus subtilis] Length = 30 Score = 44.8 bits (105), Expect = 0.019, Method: Composition-based stats. Identities = 7/30 (23%), Positives = 17/30 (56%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVS 30 MK T+++ ++E + + + + TIP+ Sbjct: 1 MKFTIQKDRLVESVQDVLKAVSSRTTIPIL 30 >gi|62362365|ref|YP_224230.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC] gi|58219987|gb|AAW67499.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC] Length = 191 Score = 44.1 bits (103), Expect = 0.034, Method: Composition-based stats. Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 12/113 (10%) Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210 ++R+Y NG+ ++N+ ++ VATDG+ +AV I + + I+ K + + Sbjct: 27 NDVRFYFNGVALYVNDGVIE-SVVATDGYSMAV----IGSTELNGEASIIANKDIDTLCN 81 Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263 L++ D VKV+ + I + L+DG +PN + VIP K V Sbjct: 82 ALATSD-QVKVNWP----VIEIGDYKI--PLVDGRYPNVKRVIPTIERKPADV 127 >gi|75765149|ref|ZP_00744418.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] gi|74487361|gb|EAO51308.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar israelensis ATCC 35646] Length = 52 Score = 44.1 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 9/49 (18%), Positives = 16/49 (32%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP 49 M+ V + L + I K+ IP+ + + AS Sbjct: 1 MEFIVNHKQFTQALSEVNKAISTKSLIPILSRYKNNCRSSGITLIASNS 49 >gi|108802380|ref|YP_642576.1| hypothetical protein Mmcs_5420 [Mycobacterium sp. MCS] gi|119855399|ref|YP_936002.1| hypothetical protein Mkms_6015 [Mycobacterium sp. KMS] gi|108772799|gb|ABG11520.1| hypothetical protein Mmcs_5420 [Mycobacterium sp. MCS] gi|119698116|gb|ABL95187.1| conserved hypothetical protein [Mycobacterium sp. KMS] Length = 224 Score = 44.1 bits (103), Expect = 0.037, Method: Composition-based stats. Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 7/108 (6%) Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI----L 212 L + +L AVATD L V+ V + M KA+ ++ + Sbjct: 31 LEAVRLEF--GSGQLVAVATDRFVLGVSRVAYTGEAFTMMLAGSDAKALVKMAKTGKRDE 88 Query: 213 SSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGEFPNYQNVIPCSNDK 259 S+++ +V+V + +++ + M+VR +D +FP +++++P + Sbjct: 89 SAREVTVEVVDAGAQVTFRFSTGEAMTVRGLDVQFPKWRHLLPSDTSR 136 >gi|213609170|ref|ZP_03368996.1| DNA polymerase III subunit beta [Salmonella enterica subsp. enterica serovar Typhi str. E98-2068] Length = 44 Score = 43.7 bits (102), Expect = 0.054, Method: Composition-based stats. Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 14/58 (24%) Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 Y+L++++ + + V L S SSV I +A YV+MPMR+ Sbjct: 1 YVLDVLNALKC-----ETVRIMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 44 >gi|289642845|ref|ZP_06474981.1| hypothetical protein FsymDgDRAFT_2239 [Frankia symbiont of Datisca glomerata] gi|289507322|gb|EFD28285.1| hypothetical protein FsymDgDRAFT_2239 [Frankia symbiont of Datisca glomerata] Length = 250 Score = 43.3 bits (101), Expect = 0.073, Method: Composition-based stats. Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 2/87 (2%) Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185 + +++ L +++ T A + L + H+ + +L AVATD +R+ Sbjct: 19 PDAVWSVSAVDLFDVLTNTRLAAYDDPTLPALCAVRLHV--DGGRLHAVATDRYRIHRDH 76 Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRIL 212 ++ A + P++ A+ ++ R++ Sbjct: 77 AELTAPASTSPAVGPVLLALPDVTRLV 103 >gi|497645|gb|AAA57069.1| DNA polymerase III beta subunit [Mycoplasma genitalium] Length = 98 Score = 43.3 bits (101), Expect = 0.073, Method: Composition-based stats. Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 6/95 (6%) Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIID 334 ++ + R + ++S +L + ++G ++E ++ + ++I FN LL+ I+ Sbjct: 3 TLAQNERTFLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIE 62 Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369 + S+ E+ F ++ I K + Sbjct: 63 SFESN-----EINFDFQGNSKYFLITSKSEPELKQ 92 >gi|24113244|ref|NP_707754.1| hypothetical protein SF1906 [Shigella flexneri 2a str. 301] gi|30063313|ref|NP_837484.1| hypothetical protein S1992 [Shigella flexneri 2a str. 2457T] gi|188493400|ref|ZP_03000670.1| hypothetical bacteriophage protein [Escherichia coli 53638] gi|188493567|ref|ZP_03000837.1| hypothetical bacteriophage protein [Escherichia coli 53638] gi|24052244|gb|AAN43461.1| hypothetical bacteriophage protein [Shigella flexneri 2a str. 301] gi|30041565|gb|AAP17293.1| hypothetical bacteriophage protein [Shigella flexneri 2a str. 2457T] gi|188488599|gb|EDU63702.1| hypothetical bacteriophage protein [Escherichia coli 53638] gi|188488766|gb|EDU63869.1| hypothetical bacteriophage protein [Escherichia coli 53638] gi|281601305|gb|ADA74289.1| Hypothetical bacteriophage protein [Shigella flexneri 2002017] gi|313650067|gb|EFS14480.1| DNA polymerase III beta subunit, central domain protein [Shigella flexneri 2a str. 2457T] gi|332756001|gb|EGJ86354.1| DNA polymerase III beta subunit, central domain protein [Shigella flexneri 4343-70] gi|332757294|gb|EGJ87631.1| DNA polymerase III beta subunit, central domain protein [Shigella flexneri 2747-71] gi|332757414|gb|EGJ87749.1| DNA polymerase III beta subunit, central domain protein [Shigella flexneri K-671] gi|332766756|gb|EGJ96959.1| DNA polymerase III beta subunit, central domain protein [Shigella flexneri 2930-71] gi|333017647|gb|EGK36959.1| DNA polymerase III beta subunit, central domain protein [Shigella flexneri K-304] Length = 189 Score = 42.1 bits (98), Expect = 0.13, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192 + L+ A ++RYYLNG HI + ++ AT+G R+A I Sbjct: 3 IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGSVALRMAHGIRTKKNII 56 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 + VP KA E ++ SK+ + V + + L+I + +L+DG FP+ + Sbjct: 57 VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITGI----KLVDGCFPDLDRI 108 Query: 253 IPCSNDK 259 IP D+ Sbjct: 109 IPKKFDR 115 >gi|149731497|ref|XP_001499014.1| PREDICTED: large subunit GTPase 1 homolog (S. cerevisiae) [Equus caballus] Length = 659 Score = 42.1 bits (98), Expect = 0.14, Method: Composition-based stats. Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 16/109 (14%) Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265 ++ R++ D V++ + + + E L V+ IDG + + +N Sbjct: 165 RQLWRVIERSDIVVQIVDARNPLLFRCEDLERYVKEIDG-----------EKENVILINK 213 Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSL---SSDKLCMTVDNPDM--GKAIE 309 +L A R + + Q VK+ ++ + +T D+ + G A E Sbjct: 214 ADLLTAEQRSAWATHFETQDVKVIFWSALAEAVQLTGDSKEQVNGDAEE 262 >gi|323174621|gb|EFZ60242.1| DNA polymerase III beta subunit, central domain protein [Escherichia coli LT-68] Length = 189 Score = 41.8 bits (97), Expect = 0.17, Method: Composition-based stats. Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192 + L+ A ++RYYLNG HI + ++ AT+G R+A I Sbjct: 3 IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGSVALRMAHGIRTKKNII 56 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 + VP KA E ++ SK+ + V + + L+I + +L+DG FP+ + Sbjct: 57 VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITGI----KLVDGCFPDLNRI 108 Query: 253 IPCSNDK 259 IP D+ Sbjct: 109 IPKKFDR 115 >gi|261403678|ref|YP_003247902.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus vulcanius M7] gi|261370671|gb|ACX73420.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus vulcanius M7] Length = 242 Score = 41.4 bits (96), Expect = 0.23, Method: Composition-based stats. Identities = 36/199 (18%), Positives = 80/199 (40%), Gaps = 24/199 (12%) Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDI-----VAQIAKMPSIIVPRKAVGEILRILSS 214 I F ++EE +K A A D +A+ ++I A I + +A +++ S Sbjct: 21 ICFEVSEEGIK--ASAMDPSHVALVSLEIPSLAFEEFTADEHEIGIDLEAFKKVMNRAKS 78 Query: 215 KDSSVKVSLSE--SRIHLNIESL---SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 KD + + L E +++++ E+ S+ L+D + V + + + Sbjct: 79 KDKLI-LELDEEKNKLNIIFENTGKRKFSLALLDLS-ASSVKVPDIEYPNVVVIKGEAFK 136 Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD------NPDMGKAIESMNVYYNECPMDIC 323 +A+ + S V L + +DK + + + K ++ Sbjct: 137 EALKDADLFSD----YVILKVENDKFLIQAKGDLNDFSAEFEKDDAAIVNLEVGEEAKSA 192 Query: 324 FNYKYLLEIIDNISSDEVV 342 FN YL++++ +SS +++ Sbjct: 193 FNLDYLMDMVKGVSSGDII 211 >gi|323518471|gb|ADX92852.1| hypothetical protein ABTW07_2428 [Acinetobacter baumannii TCDC-AB0715] Length = 182 Score = 41.4 bits (96), Expect = 0.27, Method: Composition-based stats. Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 17/131 (12%) Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198 ++ T A E+R+YL G+ + + AT+GH + A K + Sbjct: 12 KHLQATSLFAAHREVRFYLMGVLVK---DGV---MAATNGH----CALICDAPEVKDLEV 61 Query: 199 IVPRKAVGEILRILSSKDSSVKVS---LSESRIHLNIESLSM-SVRLIDGEFPNYQNVI- 253 I+P + V ++ + + ++ + + L+ E+ R IDG+FP+ V Sbjct: 62 IIPIEIVKSFIKKVGNNPKVKTITLSQIDDEFWLLDYENGMFEFFRPIDGKFPDISRVDI 121 Query: 254 --PCSNDKELR 262 P KE Sbjct: 122 PKPTEPPKEFV 132 >gi|308095429|ref|ZP_07663277.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466] gi|308087827|gb|EFO37522.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466] Length = 43 Score = 41.0 bits (95), Expect = 0.29, Method: Composition-based stats. Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 14/57 (24%) Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +L++++ + ++ V + +N+S I D DS A YV+MP+R+ Sbjct: 1 MLDVLNTLRCEK-----VQVSMSDANASALIENADDDS---------AMYVVMPIRL 43 >gi|331674171|ref|ZP_08374931.1| hypothetical bacteriophage protein [Escherichia coli TA280] gi|331068265|gb|EGI39660.1| hypothetical bacteriophage protein [Escherichia coli TA280] Length = 189 Score = 41.0 bits (95), Expect = 0.30, Method: Composition-based stats. Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192 + L+ A ++RYYLNG HI + ++ AT+G R+ I Sbjct: 3 IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGFVALRMTHGIRTKKNII 56 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 + VP KA E ++ SK+ + V + + L+I S+ +L+DG FP+ + + Sbjct: 57 VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITSI----KLVDGCFPDLERI 108 Query: 253 IPCSND 258 IP D Sbjct: 109 IPKKFD 114 >gi|301029453|ref|ZP_07192540.1| DNA polymerase III beta subunit, central domain protein [Escherichia coli MS 196-1] gi|299877656|gb|EFI85867.1| DNA polymerase III beta subunit, central domain protein [Escherichia coli MS 196-1] Length = 189 Score = 40.2 bits (93), Expect = 0.49, Method: Composition-based stats. Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%) Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192 + L+ A ++RYYLNG HI + ++ AT+G R+ I Sbjct: 3 IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGSVALRMTHGIRTKKNII 56 Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252 + VP KA E ++ SK+ + V + + L+I + +L+DG FP+ + + Sbjct: 57 VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITGI----KLVDGCFPDLERI 108 Query: 253 IPCSND 258 IP D Sbjct: 109 IPKKFD 114 >gi|296123289|ref|YP_003631067.1| hypothetical protein Plim_3046 [Planctomyces limnophilus DSM 3776] gi|296015629|gb|ADG68868.1| hypothetical protein Plim_3046 [Planctomyces limnophilus DSM 3776] Length = 415 Score = 39.8 bits (92), Expect = 0.74, Method: Composition-based stats. Identities = 46/341 (13%), Positives = 117/341 (34%), Gaps = 67/341 (19%) Query: 66 SITVSAHLLYDIVRKL--QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123 +TVSA +++R+ D ++ + ++ +++ + F + Sbjct: 74 RVTVSA----ELLRECQGSDAEVVTLEIDQDIV--------KASWSVSGFAVEREFPVFD 121 Query: 124 EEYVYSFELASSVLK------NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177 + F+ + + + + RY LN + + TD Sbjct: 122 APDEHLFQHPREYFSCPPEFLSALRQVMAVRDSASTRYALNCVQL----SGSRQQLAGTD 177 Query: 178 GHRLAV---AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234 +L + ++ + + ++ E+ R+ +V++ +E + L + Sbjct: 178 SQKLLIHRGIQLPWPEDLLVQGTDLLEA---LELQRV-----KTVRMGRTEHDLVLQLGH 229 Query: 235 LSMSVRL-IDGEFPNYQNVIP--CSNDKELR---VNCTNLRQAVDRVSIMSSVR----IQ 284 ++ ++L + +P V+P + L ++ T L + + R+ S R Q Sbjct: 230 WTVGLKLNTESHYPPVDRVVPWLSDDATRLELHPLDATRLEELLHRMLETCSSRLPTMHQ 289 Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342 + + L+ D + +A E + P +C ++L+ + E+ Sbjct: 290 PLTVDLTGDVPIVRCRTNHSPRATEIRLSRSSRHGLPGKVCLETRFLVSAL------EMG 343 Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383 ++ F S V + ++ Y+LMP+ Sbjct: 344 FQQLAFHKSD--SPVRL------------DQHQRIYILMPL 370 >gi|169835543|ref|ZP_02868731.1| hypothetical protein cdivTM_00218 [candidate division TM7 single-cell isolate TM7a] Length = 71 Score = 39.4 bits (91), Expect = 0.88, Method: Composition-based stats. Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%) Query: 49 PEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF 108 E+ I I A V+ G I + L+ + ++++ D E ++ I +N Sbjct: 1 MELSINTEIEAQVEEDGRIVIKHKLIEEFLKQISDDKITLI----EESGKLIIQASSTNT 56 Query: 109 YLQSFPESEFP 119 + FP Sbjct: 57 EFSLYNAENFP 67 >gi|255715685|ref|XP_002554124.1| KLTH0E14828p [Lachancea thermotolerans] gi|238935506|emb|CAR23687.1| KLTH0E14828p [Lachancea thermotolerans] Length = 258 Score = 39.4 bits (91), Expect = 0.93, Method: Composition-based stats. Identities = 43/222 (19%), Positives = 89/222 (40%), Gaps = 33/222 (14%) Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP------SIIVPRKAVGEILRILSS 214 + N + + A A D R+ + + I + + ++ V ++ +ILR ++ Sbjct: 25 LVNFNCNEHGIAAQAVDDSRVLLVSLSIGTESFQEFRCDRGVTLGVDLSSLSKILRCGNN 84 Query: 215 KDSSVKVSLS-ESRIHLNIESL------SMSVRL--IDGEFPNYQNVIPCSNDKELRVNC 265 D+ ++ + L E S++L ID +F + + + D + + Sbjct: 85 NDNLTLIADDTPDSVLLLFEDTKKDRISEYSLKLMDIDADFLDIEGM---EYDTVITMPS 141 Query: 266 TNLRQAVDRVSIMSS-----VRIQAVKL----SLSSDKLCMTVDNPDMGKAIESMNVYYN 316 + V ++ +S V VK + S + + DM K ES+ V + Sbjct: 142 AEFAKVVRDLNQLSDSLNILVTKDTVKFVAEGDIGSGSVIVKPH-TDMDKPQESVKVELD 200 Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358 P+D+ F KYLL+II + D++ +L + ++F Sbjct: 201 -KPVDLTFGSKYLLDIIKGAG----LSDQITIKLSAETPALF 237 >gi|225158796|ref|ZP_03725113.1| hypothetical protein ObacDRAFT_8222 [Opitutaceae bacterium TAV2] gi|224802631|gb|EEG20886.1| hypothetical protein ObacDRAFT_8222 [Opitutaceae bacterium TAV2] Length = 230 Score = 39.4 bits (91), Expect = 1.0, Method: Composition-based stats. Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 29/159 (18%) Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG-- 206 + +E RY LN + ++ K+ VATDG R+A+ + + + S +P + Sbjct: 19 SHDECRYILNVVRVE-RQDAKKILLVATDGKRIAIIRHQVSDNLPEFESFSIPLPLIDRA 77 Query: 207 ---------EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG------------E 245 E L D + + L + ++S+ + +G + Sbjct: 78 DITIKARAYETLAYELEDDEIPSYAAANPDAVLTFDGKTVSMTMPNGITFLATSGKELKQ 137 Query: 246 FPNYQNVIP-----CSNDKELRVNCTNLRQAVDRVSIMS 279 FP +++ + +N + V+ +R +++S Sbjct: 138 FPFWKSTLADLDKGQTNKSVISVSGFLMRDFCRAAAMLS 176 >gi|237710660|ref|ZP_04541141.1| predicted protein [Bacteroides sp. 9_1_42FAA] gi|229455382|gb|EEO61103.1| predicted protein [Bacteroides sp. 9_1_42FAA] Length = 576 Score = 39.1 bits (90), Expect = 1.1, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 82/232 (35%), Gaps = 30/232 (12%) Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVL--KNLVERTHFAMATEEIRYYLNGIFFHINE 166 L ++ + E + + + K + T + +R N I+ Sbjct: 91 KLIGTKQANKTRFTKIEERENIVCSFDIWITKEHLNITKLVT-KDSLRPAFNYIYL---- 145 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILR-----ILSSKDSSV 219 + K VA+DG L V I + + + K + E++ + + + ++ Sbjct: 146 DPYKSALVASDGRTLKEYPVIIETSGLLPDSLKLFINPKHLKEMVGRCSVCVCNQEGGNI 205 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM 278 ++ + + G FPNY+ V P S D +++ + L+ V + Sbjct: 206 TEITNDKKQTFVCD--------FAGYFPNYRLVYPNLSKDGFIKIQKSELKAVASFVKEI 257 Query: 279 SSVRIQ---AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC---PMDICF 324 + + +++ +K+ ++ ++ D + + V + + + F Sbjct: 258 AKRNKKSGFSLRTIAGENKVYLSYNDADS-NGHKELCVTLEKAALIDIKLGF 308 >gi|237720969|ref|ZP_04551450.1| predicted protein [Bacteroides sp. 2_2_4] gi|229449804|gb|EEO55595.1| predicted protein [Bacteroides sp. 2_2_4] Length = 576 Score = 39.1 bits (90), Expect = 1.3, Method: Composition-based stats. Identities = 32/232 (13%), Positives = 82/232 (35%), Gaps = 30/232 (12%) Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVL--KNLVERTHFAMATEEIRYYLNGIFFHINE 166 L ++ + E + + + K + T + +R N I+ Sbjct: 91 KLIGTKQANKTRFTKIEERENIVCSFDIWITKEHLNITKLVT-KDSLRPAFNYIYL---- 145 Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILR-----ILSSKDSSV 219 + K VA+DG L V I + + + K + E++ + + + ++ Sbjct: 146 DPYKSALVASDGRTLKEYPVIIETSGLLPDSLKLFINPKHLKEMVGRCSVCVCNQEGGNI 205 Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM 278 ++ + + G FPNY+ V P S D +++ + L+ V + Sbjct: 206 TEITNDKKQTFVCD--------FAGYFPNYRLVYPNLSKDGFIKIQKSELKAVASFVKEI 257 Query: 279 SSVRIQ---AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC---PMDICF 324 + + +++ +K+ ++ ++ D + + V + + + F Sbjct: 258 AKRNKKSGFSLRTIAGENKVYLSYNDADS-NGHKELCVTLEKAALIDIKLGF 308 >gi|330903339|gb|EGH33911.1| hypothetical protein PSYJA_35327 [Pseudomonas syringae pv. japonica str. M301072PT] Length = 22 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 6/22 (27%), Positives = 12/22 (54%) Query: 1 MKITVERSDILELLGHACRIIE 22 M T++R +L+ L ++E Sbjct: 1 MHFTIQREALLKPLQLVAGVVE 22 >gi|119469689|ref|ZP_01612558.1| hypothetical protein ATW7_15804 [Alteromonadales bacterium TW-7] gi|119446936|gb|EAW28207.1| hypothetical protein ATW7_15804 [Alteromonadales bacterium TW-7] Length = 835 Score = 38.7 bits (89), Expect = 1.4, Method: Composition-based stats. Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 15/120 (12%) Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFN 325 R+ DR+ I+S + + N ++ +A+ S+ + I FN Sbjct: 97 EFRKYFDRIDIISKTP----RYKFDENSAISKASNANISEAVLASIKIEKE-EDGKIAFN 151 Query: 326 YK--YLLEII-DNISSDEVVDDEVVFRLD----SSNSSVFIRGKDKDSKNNKDNKVNAFY 378 +L E + + D R S S I K + NN D V+ + Sbjct: 152 VNKLFLSEALHKVSPTINPADKNAKKRFKVGKLDSKKSRII--KQRPYPNNLDVVVDYVF 209 >gi|329576318|gb|EGG57833.1| hypothetical protein HMPREF9520_01574 [Enterococcus faecalis TX1467] Length = 54 Score = 38.7 bits (89), Expect = 1.5, Method: Composition-based stats. Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 13/65 (20%) Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379 MDI FN Y+ + + D + + S + + + ++ + Sbjct: 1 MDISFNPDYMKDALRAFG-----DMNITVKFLSPIRPFTLEPTETE--------LDFIQL 47 Query: 380 LMPMR 384 + P+R Sbjct: 48 ITPVR 52 >gi|118396790|ref|XP_001030732.1| hypothetical protein TTHERM_01026330 [Tetrahymena thermophila] gi|89285045|gb|EAR83069.1| hypothetical protein TTHERM_01026330 [Tetrahymena thermophila SB210] Length = 1748 Score = 38.3 bits (88), Expect = 1.9, Method: Composition-based stats. Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 18/141 (12%) Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----LSMSVRLIDGEFPNYQNVIP 254 I+ + ++ S + ++++S+ N + + + + +IP Sbjct: 1113 IIQKLTNLNQVKRRKDTSDSFECNINQSQNDFNFNDSQAQFQVQSVKNEENYKSLMQIIP 1172 Query: 255 CSNDKELR----VNCTNLRQAV------DRVSIMS----SVRIQAVKLSLSSDKLCMTVD 300 + + E + NL+ + VS++S S + L L + V Sbjct: 1173 ENKETESTKNSDIQQQNLKDKILDQTRYKSVSVVSYDHFSKNNNKINLHLPNQNAFFDVQ 1232 Query: 301 NPDMGKAIESMNVYYNECPMD 321 N D+ K E +N + + Sbjct: 1233 NNDLLKQNEDLNCTIEDEDEE 1253 >gi|189426934|ref|YP_001950033.1| beta clamp domain-like protein [Ralstonia phage RSL1] gi|189233246|dbj|BAG41603.1| beta clamp domain-like protein [Ralstonia phage RSL1] Length = 355 Score = 38.3 bits (88), Expect = 2.1, Method: Composition-based stats. Identities = 52/310 (16%), Positives = 117/310 (37%), Gaps = 32/310 (10%) Query: 1 MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59 MK VE S I E + A + P++ + LQA D L + +S E+ +P Sbjct: 1 MKAQVECSIIQEAVRIASLLAP-----PMTGTITLQATDKRLYLHSS-SELSRCRVQLPG 54 Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119 +V + + L D VR + + + G L + E Sbjct: 55 TVQGDATFALPISALSDSVRG------RKEVTLELVKGVLTLVDGRYKASLSTVDALEIE 108 Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDG 178 K EE ++L++ + L+ +T ++ + G F + + K VA Sbjct: 109 DFKPEEEAKKWKLSADLSTWLL-KTVTSIGLKASG----GSFMPLAIQAGAKSTFVAC-- 161 Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238 + A + ++P + +L + D + L++S + ++ + + ++ Sbjct: 162 YDQAHMAFARSTDVQGDLQTVLPFDTMRAVLDVFKGVD--CVLHLTKSSLWVSNKMVQVA 219 Query: 239 VRLI--DG-EFPNYQNVIPCSND------KELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289 + L DG E + ++V+ + + ++ ++ +D +++ + ++ Sbjct: 220 LSLPSADGDEVISIESVLEKAKEAVKADGSKVTAVKADVMAFLDNARAVATKERPELGIT 279 Query: 290 LSSDKLCMTV 299 + KL M+V Sbjct: 280 AKNGKLQMSV 289 >gi|11497947|ref|NP_069171.1| DNA polymerase sliding clamp [Archaeoglobus fulgidus DSM 4304] gi|13124400|sp|O29912|PCNA_ARCFU RecName: Full=DNA polymerase sliding clamp; AltName: Full=Proliferating cell nuclear antigen homolog; Short=PCNA gi|42543622|pdb|1RWZ|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen (Pcna) From A. Fulgidus gi|42543623|pdb|1RXM|A Chain A, C-Terminal Region Of Fen-1 Bound To A. Fulgidus Pcna gi|42543636|pdb|1RXZ|A Chain A, C-Terminal Region Of A. Fulgidus Fen-1 Complexed With A. Fulgidus Pcna gi|321159921|pdb|3P83|A Chain A, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159922|pdb|3P83|B Chain B, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|321159923|pdb|3P83|C Chain C, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus Fulgidus. gi|2650299|gb|AAB90899.1| proliferating-cell nuclear antigen (pol30) [Archaeoglobus fulgidus DSM 4304] Length = 245 Score = 37.9 bits (87), Expect = 2.5, Method: Composition-based stats. Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 16/193 (8%) Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSS 214 H E+ L AV D +A+ VDI I + +I V + +I + +S+ Sbjct: 26 RIHFLEKGLHSRAV--DPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSIST 83 Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVD 273 KD + ES + + S+ V LID + IP ++ ++ ++A+ Sbjct: 84 KDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIA 143 Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVD---NPDMGKAIESMNVYYNECPMDICFNYKYLL 330 +S V + + + + E+ + +N F+ YL Sbjct: 144 AADKISDQ----VIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLK 199 Query: 331 EIIDNISSDEVVD 343 E S +++ Sbjct: 200 EFCKVAGSGDLLT 212 >gi|48478388|ref|YP_024094.1| DNA polymerase sliding clamp [Picrophilus torridus DSM 9790] gi|73921629|sp|Q6KZF1|PCNA_PICTO RecName: Full=DNA polymerase sliding clamp; AltName: Full=Proliferating cell nuclear antigen homolog; Short=PCNA gi|48431036|gb|AAT43901.1| DNA polymerase sliding clamp [Picrophilus torridus DSM 9790] Length = 245 Score = 37.9 bits (87), Expect = 2.7, Method: Composition-based stats. Identities = 33/215 (15%), Positives = 89/215 (41%), Gaps = 23/215 (10%) Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI-----LSS 214 + F + + + AV D +A+ +DI + P + ++ ++ L+S Sbjct: 25 VKFKLEPNGISVTAV--DPAHVAMISLDIPKNAFSEYDLDAPDEIAVDLDKVKSVIRLAS 82 Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 + ++ +S ++ I ++ S+ L+D V ++D + ++ ++L + + Sbjct: 83 SNDTIVISKDRDKLRFEIGTIIKSIALLDNNSVTTPRVPQINSDDYVILSKSDLEKGLRA 142 Query: 275 VSIMSSVRIQAVKLSLSSDKLCM-TVDNPDMGKA---IESMNVYYNECPMDICFNYKYLL 330 +S A++L+L+ + + + D + + + P+ + +YLL Sbjct: 143 AEDVSD----AIRLTLTPESFSAKSTSDSDESEMLLPKDMLKDISCSQPIKSSYPLEYLL 198 Query: 331 EIIDNISSDEVVD--------DEVVFRLDSSNSSV 357 +++ +ISS+E + + F +S + Sbjct: 199 KLVKSISSNEDIKISFKSDYPLSIEFSFNSETEPI 233 >gi|327401267|ref|YP_004342106.1| DNA polymerase sliding clamp [Archaeoglobus veneficus SNP6] gi|327316775|gb|AEA47391.1| DNA polymerase sliding clamp [Archaeoglobus veneficus SNP6] Length = 245 Score = 37.5 bits (86), Expect = 3.4, Method: Composition-based stats. Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 15/178 (8%) Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES--- 116 VD +I V + ++DI + ++ G + E+E T + I G + + S Sbjct: 60 KVDEEKTIGVDVNRVFDISKAIKSGELVEMKVEDE--TSLMIKFGSVQYSVALIDPSAIR 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + P E L + K + R G + + Sbjct: 118 KEPKVPSLELPAKIVLDAGEFKKAINAADKISDHVVFRSDETGFYIEAEGD--------V 169 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233 D ++E +++ + + + + E ++ S D + + L + + L E Sbjct: 170 DRIEFHMSEAELIEFNRGVARSMFSIEYLKEFVKTAGSGDV-LTIYLGNNYPVRLVFE 226 >gi|269941599|emb|CBI50005.1| phage protein [Staphylococcus aureus subsp. aureus TW20] Length = 226 Score = 37.5 bits (86), Expect = 3.6, Method: Composition-based stats. Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 21/154 (13%) Query: 245 EFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK----LCMT 298 ++P +IP + + ++ +N + + + +++ + L + ++ + + Sbjct: 79 QYPETSRIIPESENANNKIIINHDEIDLLIAILKAYKGIKLDRLTLIIDKNQEYYLMNYS 138 Query: 299 VDNPDMGKAIESMNVYYNECPM--------DICFNYKYLLEIIDNISSDEVVDDEVVFRL 350 N + + +E +N+ Y + I FN YLL + + D D Sbjct: 139 DFNFNNNELLEHLNLNYKLKNINLSDKPVHKITFNVSYLLNAFEYLKDDVKTQDL----- 193 Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384 +NS K+ N D + YV+ P+R Sbjct: 194 --TNSYYIYLTKENYPINIMDKANSFNYVICPIR 225 >gi|330803046|ref|XP_003289521.1| hypothetical protein DICPUDRAFT_35924 [Dictyostelium purpureum] gi|325080381|gb|EGC33939.1| hypothetical protein DICPUDRAFT_35924 [Dictyostelium purpureum] Length = 713 Score = 37.5 bits (86), Expect = 3.7, Method: Composition-based stats. Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 5/117 (4%) Query: 21 IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80 + P+ ++ + ++DG + IK S + ++D I A +IV K Sbjct: 165 LSNDPLYPIPSNIFITSSDGAISIKGSYFSYN-ESLVSVTIDGSPCILSQAPTFNEIVCK 223 Query: 81 LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137 L + ++ + I S F L+S + S + ++ Sbjct: 224 LSS----FNSTKTKVPAIITIDQETSKFTLESLLPGTENIITDCPNSCSNHGSCNLD 276 >gi|302307208|ref|NP_983787.2| ADL309Wp [Ashbya gossypii ATCC 10895] gi|299788889|gb|AAS51611.2| ADL309Wp [Ashbya gossypii ATCC 10895] Length = 259 Score = 37.5 bits (86), Expect = 3.8, Method: Composition-based stats. Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 14/151 (9%) Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253 I+ A + L +++ + L E I S+ + ID +F + Sbjct: 73 NSLGKILRCGANEDSLTLVAEDSPDTMLVLFEDTKRERISEYSLKLMEIDADFLEIDQI- 131 Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSS-----VRIQAVKL----SLSSDKLCMTVDNPDM 304 D + + + + ++ +S V + +K S + + D+ Sbjct: 132 --DYDTTVHMPSAEFAKIIRDLNQLSDSLNVVVTKETIKFISEGDFGSGSVIVKPR-TDV 188 Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDN 335 + +S+ V P+D+ F KYLL+II Sbjct: 189 ERPEDSVKVELE-KPVDLTFGSKYLLDIIKA 218 >gi|210616832|ref|ZP_03291256.1| hypothetical protein CLONEX_03477 [Clostridium nexile DSM 1787] gi|210149650|gb|EEA80659.1| hypothetical protein CLONEX_03477 [Clostridium nexile DSM 1787] Length = 400 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 54/393 (13%), Positives = 129/393 (32%), Gaps = 38/393 (9%) Query: 2 KITVERSDILELLGHACRIIERKNTIPVSCHVLL-------QANDGLLEIKASGPEIEIT 54 + + D+ E + A + + + L A D I A +++ Sbjct: 3 QFKMNSKDLAEAMKKASIALPVSKGKGENECIRLVINKKSKDAEDYRAVILAFNGKVQTI 62 Query: 55 GAIPAS--VDVCG--SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110 GA+ + I V+ L A ++ E ++ +E ++ S L Sbjct: 63 GALNIEEVITETDIPEINVNGRQLLA---SANAFAAMNAAIELKIDSEAVVTGAGSRVAL 119 Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170 + +S E + E++ + TE+ + ++ + I+ + Sbjct: 120 K-LGKSVMALKASETVMQEVEISGEEFTQFMNFGISCFGTEKGMHGIHCVAVRIDASANR 178 Query: 171 LCAVATDGHRLAVAEVDI----------VAQIAKMPSIIVPRKAVGEILRILSSKDSS-- 218 + AV+T+G+R A AE +Q + S P +IL S + Sbjct: 179 IFAVSTNGYRCAYAETTNIKMYSLKKPQNSQEDEDTSAGAPAITAIVEGKILKSAIQNFL 238 Query: 219 ----VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274 V + + + + + + + + + ++P + +K L + + Sbjct: 239 GKKKVYLGIDDKMLRIRSGTDVVMILQQEVDYPLEPMLKLIEGNKSLGRWKAPYIKVLQS 298 Query: 275 VSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333 +S+ + + ++ L + D + D G S+ + + +L + Sbjct: 299 LSV-CEIAMDSMWLEICKEDDNHILFRGKD-GVTKTSIFCAMEGEIQRVVLDESHLKNAL 356 Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366 S ++ +++ IR K+ D Sbjct: 357 SVFSKEQ----DIIVESVGERRPFVIRQKEDDP 385 >gi|284162355|ref|YP_003400978.1| proliferating cell nuclear antigen PcnA [Archaeoglobus profundus DSM 5631] gi|284012352|gb|ADB58305.1| proliferating cell nuclear antigen PcnA [Archaeoglobus profundus DSM 5631] Length = 245 Score = 37.1 bits (85), Expect = 4.5, Method: Composition-based stats. Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 13/177 (7%) Query: 60 SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES--- 116 ++D +I V + + DI++ ++ + E+E + + I G + + S Sbjct: 60 TIDEEKTIGVDVNRVNDILKTVKKKELVELKVEDE--SILKIKFGSVEYSVALIDPSAIR 117 Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176 + P E E L + K ++ R G + + Sbjct: 118 KEPKIPELELPAKVVLDAGEFKKAIQAADKIADHVVFRTDETGFYIEAKGD--------I 169 Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233 D + E++++ + + + + E ++I S D + + L + Sbjct: 170 DKIVFHMGEMELIEFNKEKARSMFSVEYLKEFVKIAGSGDILTIYLGDDYPVRLIFD 226 >gi|327398568|ref|YP_004339437.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima DSM 10411] gi|327181197|gb|AEA33378.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411] Length = 380 Score = 37.1 bits (85), Expect = 4.8, Method: Composition-based stats. Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 7/81 (8%) Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316 +++ + +N + + +D +++ IQ +K+ L K +T N D I +N+ N Sbjct: 20 SNRSIIINKSKFLEILD--NLIRIQNIQELKIKLKELKSNLTSTNKDK---IGILNIDKN 74 Query: 317 ECPMDICFNYKYLLEIIDNIS 337 ++I +N YL+ + I Sbjct: 75 GDTIEIKYN--YLINELTQIE 93 >gi|316961016|gb|EFV48151.1| DNA ligase 1 [Trichinella spiralis] Length = 237 Score = 37.1 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMSVRLI 242 I I P + P K + E+L+ S + + + ++IH ++ + R Sbjct: 138 HCHITPGIPLKPMLAFPSKGIEEVLKRFGSAEFACEWKYDGERAQIHFYDGTVKVFSRNQ 197 Query: 243 D---GEFPNYQNVIPC 255 + G++P+ +IP Sbjct: 198 ENHTGKYPDIVELIPK 213 >gi|290475022|ref|YP_003467906.1| hypothetical protein XBJ1_2007 [Xenorhabdus bovienii SS-2004] gi|289174339|emb|CBJ81133.1| Hypothetical bacteriophage protein [Xenorhabdus bovienii SS-2004] Length = 176 Score = 37.1 bits (85), Expect = 5.1, Method: Composition-based stats. Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 11/122 (9%) Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199 L+ +A + RYYL G+ + VA RL I + I Sbjct: 7 LLRAALVCVAKNDPRYYLCGVHITPKYLESSNGFVA---FRLEHGINTRRKAIIQFHGKI 63 Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259 + E+ + + +V ++ R+ + ++DG FP+ VIP + Sbjct: 64 PKKADTTEL--HFTKEPYAVHRDIAGVRVGFTA------LSMLDGRFPDLDRVIPKKVEN 115 Query: 260 EL 261 + Sbjct: 116 VI 117 >gi|50304235|ref|XP_452067.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140] gi|49641199|emb|CAH02460.1| KLLA0B12078p [Kluyveromyces lactis] Length = 258 Score = 36.8 bits (84), Expect = 6.1, Method: Composition-based stats. Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 12/128 (9%) Query: 1 MK----ITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIK-ASGPEI 51 MK IT+ +D + + ++ + N + + A G + +K + + Sbjct: 131 MKYESYITMPSADFAKTVRDLSQLSDSINILVTKDTIKFAAEGDIGSGSIVVKPFTDLD- 189 Query: 52 EITGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENELGTEVNISHGDSNFY 109 +I +++ + A L DI++ L D I +E + +IS G+ FY Sbjct: 190 HPESSIKVTIEKPVDLRFGAKYLNDIIKGSSLSDTITIKLSEEAPALFQFDISSGNLQFY 249 Query: 110 LQSFPESE 117 L + E Sbjct: 250 LAPKFDEE 257 >gi|316971746|gb|EFV55486.1| DNA ligase 1 [Trichinella spiralis] Length = 825 Score = 36.4 bits (83), Expect = 7.2, Method: Composition-based stats. Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 5/76 (6%) Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMSVRLI 242 I I P + P K + E+L+ S + + + ++IH ++ + R Sbjct: 424 HCHITPGIPLKPMLAFPSKGIEEVLKRFGSAEFACEWKYDGERAQIHFYDGTVKVFSRNQ 483 Query: 243 D---GEFPNYQNVIPC 255 + G++P+ +IP Sbjct: 484 ENHTGKYPDIVELIPK 499 >gi|256027835|ref|ZP_05441669.1| hypothetical protein PrD11_07536 [Fusobacterium sp. D11] gi|289765787|ref|ZP_06525165.1| predicted protein [Fusobacterium sp. D11] gi|289717342|gb|EFD81354.1| predicted protein [Fusobacterium sp. D11] Length = 242 Score = 36.4 bits (83), Expect = 7.7, Method: Composition-based stats. Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 27/214 (12%) Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235 TD +RL E + + + + E+ + L+ ++ + I + Sbjct: 51 TDTYRLFAVEDTDKERKGTDTANLYSITLLNELFKA------ETIAILNNGKLVIQIGTE 104 Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK-LSLSSD 293 ++ + N + VI L+ + N ++ + K + Sbjct: 105 ITEYEALNKKALNIKKVIESYEYTTFLKSSVVNKTTTDIVWKMLKLTKFDTRKYFIFKDN 164 Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFN--YKYLLEIIDNISSDEVVDDEVVFRLD 351 K+ + + I + YN+ +DI FN KY+ ++ + ++ L Sbjct: 165 KVRVEAYPNEDSTLILNDLFEYNKDNLDIKFNLNVKYI-----DLWLKYIKNEFFNISLS 219 Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385 +SNS++ K + N Y++MPMR+ Sbjct: 220 TSNSAI------------KFSNCNITYIVMPMRV 241 >gi|313113562|ref|ZP_07799150.1| hypothetical protein HMPREF9436_00999 [Faecalibacterium cf. prausnitzii KLE1255] gi|310624077|gb|EFQ07444.1| hypothetical protein HMPREF9436_00999 [Faecalibacterium cf. prausnitzii KLE1255] Length = 108 Score = 36.4 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%) Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341 V + L S + + E + E + I FN ++L E++ ++ DEV Sbjct: 20 GVIMDLESGGTGRASMCSTIAQMNEEFSFNGKLEEHLRIGFNLEFLSEVLKSMEGDEV 77 >gi|126652742|ref|ZP_01724894.1| hypothetical protein BB14905_21403 [Bacillus sp. B14905] gi|126590431|gb|EAZ84550.1| hypothetical protein BB14905_21403 [Bacillus sp. B14905] Length = 215 Score = 36.4 bits (83), Expect = 8.3, Method: Composition-based stats. Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 21/105 (20%) Query: 244 GEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301 +PN ++ + ++ + Q + + + + + A+K S ++D + ++V Sbjct: 83 YNYPNLSGLLEVGENKQSSFSLSKEDALQLIPAIKFIKANKFLAMKFSFTNDSIVLSVPG 142 Query: 302 PDMGKAIESMNVYYNECPMDI----------CFNYKYLLEIIDNI 336 +N+ + DI F YLL ++ Sbjct: 143 ---------INLKLDGFEFDINQHKDAENTLAFTPGYLLNALEAF 178 >gi|256810389|ref|YP_003127758.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus fervens AG86] gi|256793589|gb|ACV24258.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus fervens AG86] Length = 242 Score = 36.4 bits (83), Expect = 8.9, Method: Composition-based stats. Identities = 40/202 (19%), Positives = 78/202 (38%), Gaps = 30/202 (14%) Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDI-----VAQIAKMPSIIVPRKAVGEILRILSS 214 I F ++EE ++ A A D +A+ ++I A I + +A +++ S Sbjct: 21 ICFEVDEEGVR--ASAMDPSHVALVSLEIPRLAFEEYEADNHEIGIDLEAFKKVMNRAKS 78 Query: 215 KDSSVKVSLSE-----SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269 KD + + L E + I N S+ L+D + V + + + Sbjct: 79 KDRLI-LELDEEKNKLNVIFENTGKRKFSLALLDLS-ASSVKVPEIEYPNVIMIKGDAFK 136 Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD------NPDMGK---AIESMNVYYNECPM 320 +A+ + S V L + +K + N + K AI S++V Sbjct: 137 EALKDADLFSD----YVILKVDEEKFVVHAKGDLNDFNAEFEKDSSAIISLDVK---EEA 189 Query: 321 DICFNYKYLLEIIDNISSDEVV 342 FN YL +++ +SS +++ Sbjct: 190 KSAFNLDYLKDMVKGVSSGDII 211 Database: nr Posted date: May 22, 2011 12:22 AM Number of letters in database: 999,999,966 Number of sequences in database: 2,987,313 Database: /data/usr2/db/fasta/nr.01 Posted date: May 22, 2011 12:30 AM Number of letters in database: 999,999,796 Number of sequences in database: 2,903,041 Database: /data/usr2/db/fasta/nr.02 Posted date: May 22, 2011 12:36 AM Number of letters in database: 999,999,281 Number of sequences in database: 2,904,016 Database: /data/usr2/db/fasta/nr.03 Posted date: May 22, 2011 12:41 AM Number of letters in database: 999,999,960 Number of sequences in database: 2,935,328 Database: /data/usr2/db/fasta/nr.04 Posted date: May 22, 2011 12:46 AM Number of letters in database: 842,794,627 Number of sequences in database: 2,394,679 Lambda K H 0.314 0.155 0.416 Lambda K H 0.267 0.0473 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 6,604,142,675 Number of Sequences: 14124377 Number of extensions: 286974865 Number of successful extensions: 787649 Number of sequences better than 10.0: 2675 Number of HSP's better than 10.0 without gapping: 4500 Number of HSP's successfully gapped in prelim test: 631 Number of HSP's that attempted gapping in prelim test: 759568 Number of HSP's gapped (non-prelim): 5603 length of query: 385 length of database: 4,842,793,630 effective HSP length: 141 effective length of query: 244 effective length of database: 2,851,256,473 effective search space: 695706579412 effective search space used: 695706579412 T: 11 A: 40 X1: 16 ( 7.3 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (21.3 bits) S2: 83 (36.4 bits)