BLASTP 2.2.22 [Sep-27-2009]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.


Reference for compositional score matrix adjustment: Altschul, Stephen F., 
John C. Wootton, E. Michael Gertz, Richa Agarwala, Aleksandr Morgulis,
Alejandro A. Schaffer, and Yi-Kuo Yu (2005) "Protein database searches
using compositionally adjusted substitution matrices", FEBS J. 272:5101-5109.


Reference for composition-based statistics starting in round 2:
Schaffer, Alejandro A., L. Aravind, Thomas L. Madden,
Sergei Shavirin, John L. Spouge, Yuri I. Wolf,  
Eugene V. Koonin, and Stephen F. Altschul (2001), 
"Improving the accuracy of PSI-BLAST protein database searches with 
composition-based statistics and other refinements",  Nucleic Acids Res. 29:2994-3005.

Query= gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit
beta [Candidatus Liberibacter asiaticus str. psy62]
         (385 letters)

Database: nr 
           14,124,377 sequences; 4,842,793,630 total letters

Searching..................................................done


Results from round 1


>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040131|gb|ACT56927.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 385

 Score =  783 bits (2022), Expect = 0.0,   Method: Compositional matrix adjust.
 Identities = 385/385 (100%), Positives = 385/385 (100%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS
Sbjct: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS
Sbjct: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR
Sbjct: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR
Sbjct: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD
Sbjct: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR
Sbjct: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           GKDKDSKNNKDNKVNAFYVLMPMRI
Sbjct: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385


>gi|315122098|ref|YP_004062587.1| DNA polymerase III subunit beta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495500|gb|ADR52099.1| DNA polymerase III subunit beta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 370

 Score =  544 bits (1401), Expect = e-152,   Method: Compositional matrix adjust.
 Identities = 281/386 (72%), Positives = 321/386 (83%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I VERS+ILE L H CRIIER+ TIPV+CHV LQ  DG L++KASGPEIEIT  IPA 
Sbjct: 1   MEIIVERSNILEPLNHVCRIIERRTTIPVACHVFLQTIDGSLKMKASGPEIEITEVIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++V GS TVSAHLLYDIVRK  +G++I F K +  GTEV +  GDS FYLQSF ESEFP+
Sbjct: 61  INVGGSATVSAHLLYDIVRKFPEGSEILFSKSDAQGTEVKVVSGDSQFYLQSFSESEFPN 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            KEE+Y YSFEL SSVLK L+ERTHFAMATEEIRYYLNGIFFHINEED  LCAVATDGHR
Sbjct: 121 IKEEDYEYSFELESSVLKILIERTHFAMATEEIRYYLNGIFFHINEEDSTLCAVATDGHR 180

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           LAVA+V++   IAKMPSIIVPRKAVGEI +I+S+ K  SVK+S+SESRIHLNI  LSMS+
Sbjct: 181 LAVAKVNV--PIAKMPSIIVPRKAVGEIQKIISTVKFLSVKISISESRIHLNIGRLSMSI 238

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDGEFP+YQNVIP +NDK LRVNC++LRQAVDRVS +SSVR QAVKLSLSS+KLCMTV
Sbjct: 239 RLIDGEFPHYQNVIPHNNDKVLRVNCSSLRQAVDRVSTISSVRNQAVKLSLSSEKLCMTV 298

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DNP+MGKAIE ++V Y++CPMDICFNYKYLLEII NIS     DD+VVFRLDSS+SS  I
Sbjct: 299 DNPEMGKAIEYLDVNYHDCPMDICFNYKYLLEIIGNIS-----DDDVVFRLDSSSSSALI 353

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +G +     NKD    AFYVLMPMRI
Sbjct: 354 QGFE-----NKD----AFYVLMPMRI 370


>gi|209551896|ref|YP_002283813.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537652|gb|ACI57587.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 372

 Score =  363 bits (932), Expect = 3e-98,   Method: Compositional matrix adjust.
 Identities = 187/387 (48%), Positives = 260/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     ++ G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQSGATTVPAHLLYDIVRKLPDGSEVLLATSSD-GGSMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + + +V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|86355975|ref|YP_467867.1| DNA polymerase III subunit beta [Rhizobium etli CFN 42]
 gi|86280077|gb|ABC89140.1| DNA polymerase III, beta chain protein [Rhizobium etli CFN 42]
          Length = 372

 Score =  362 bits (929), Expect = 5e-98,   Method: Compositional matrix adjust.
 Identities = 186/387 (48%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PA+
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++      E G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGAEVLLATSTE-GGSMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDSMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|116250102|ref|YP_765940.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254750|emb|CAK05824.1| putative DNA polymerase III, beta chain [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 372

 Score =  362 bits (929), Expect = 6e-98,   Method: Compositional matrix adjust.
 Identities = 187/387 (48%), Positives = 260/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     ++ G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQPGATTVPAHLLYDIVRKLSDGSEVLLATSSD-GGSMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E +  LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|218509914|ref|ZP_03507792.1| DNA polymerase III subunit beta [Rhizobium etli Brasil 5]
          Length = 372

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTD-GGSMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|241207273|ref|YP_002978369.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861163|gb|ACS58830.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 372

 Score =  361 bits (927), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 187/387 (48%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     +  G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQPGATTVPAHLLYDIVRKLSDGSEV-LLATSPDGGAMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E +  LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|327192029|gb|EGE59010.1| DNA polymerase III subunit beta [Rhizobium etli CNPAF512]
          Length = 372

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTD-GGSMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|190889986|ref|YP_001976528.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652]
 gi|190695265|gb|ACE89350.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652]
          Length = 372

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 260/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTD-GGSMTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|222084599|ref|YP_002543128.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84]
 gi|221722047|gb|ACM25203.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84]
          Length = 372

 Score =  361 bits (926), Expect = 1e-97,   Method: Compositional matrix adjust.
 Identities = 187/387 (48%), Positives = 257/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A    L++KA+  ++EIT A PA+
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGANLDMKATDLDLEITEATPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  G  + ++ G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEV-LLATNPDGGSMTVASGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   +E DLKL AVATDG
Sbjct: 120 LTAGSFSHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESEGDLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V   +    MP II+PRK VGE+ +++ S D  V V +S+++I   I S+ M+
Sbjct: 180 HRLARADVSAPSGSEGMPGIIIPRKTVGELQKLVDSPDVIVTVEVSDAKIRTTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP +NDKE+RV+C +  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTNNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALSDGQLLLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      D  +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----DAAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|227824176|ref|YP_002828149.1| DNA polymerase III subunit beta [Sinorhizobium fredii NGR234]
 gi|227343178|gb|ACP27396.1| DNA polymerase III, beta subunit [Sinorhizobium fredii NGR234]
          Length = 372

 Score =  358 bits (918), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 182/387 (47%), Positives = 257/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      E GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAE-GTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF L ++ LK L++RT FA++TEE RYYLNGIF H   N+ +LKL AVATDG
Sbjct: 120 LTAGSFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVENKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+++  A    MP II+PRK V E+ ++L + D  V   +S+++I L I S+ M+
Sbjct: 180 HRLARADIEAPAGSEGMPGIIIPRKTVSELQKLLDTPDVVVTAEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALTDGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A+E + V Y   P++I FN KYLL+I     + ++  +E VF L    S   
Sbjct: 300 VNNPDSGSAMEELPVGYENDPLEIGFNAKYLLDI-----TAQLTGNEAVFMLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372


>gi|307301232|ref|ZP_07580994.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C]
 gi|307317903|ref|ZP_07597340.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
 gi|306896305|gb|EFN27054.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
 gi|306903688|gb|EFN34275.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C]
          Length = 372

 Score =  357 bits (917), Expect = 1e-96,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      E GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAE-GTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF L +  LK L++RT FA++TEE RYYLNGIF H  E   DLKL AVATDG
Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK V E+ ++L S D  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP SNDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN KYLL+I     + ++   E VF L    S   
Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDI-----TGQLTGSEAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +A YVLMPMR+
Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372


>gi|15964088|ref|NP_384441.1| DNA polymerase III subunit beta [Sinorhizobium meliloti 1021]
 gi|15073264|emb|CAC41772.1| Probable DNA polymerase III, beta chain [Sinorhizobium meliloti
           1021]
          Length = 372

 Score =  357 bits (916), Expect = 2e-96,   Method: Compositional matrix adjust.
 Identities = 185/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      E GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEVRLATNAE-GTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF L +  LK L++RT FA++TEE RYYLNGIF H  E   DLKL AVATDG
Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK V E+ ++L S D  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP SNDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN KYLL+I     + ++   E VF L    S   
Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDI-----TGQLTGGEAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +A YVLMPMR+
Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372


>gi|163757766|ref|ZP_02164855.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43]
 gi|162285268|gb|EDQ35550.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43]
          Length = 372

 Score =  355 bits (912), Expect = 6e-96,   Method: Compositional matrix adjust.
 Identities = 181/387 (46%), Positives = 253/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLL+A    L++KA+  ++EIT A PA 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGATLDMKATDLDLEITEATPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS TV AHLLYDIVRKL DG+++     N  G  + ++ G S F LQ  PES+FP 
Sbjct: 61  IEQAGSTTVPAHLLYDIVRKLSDGSEV-MLATNPDGASMTVASGRSKFTLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + ++F L ++ LK L++RT FA++TEE RYYLNGIF H   +E  LKL AVATDG
Sbjct: 120 LTAGAFSHTFRLPATELKMLIDRTQFAISTEETRYYLNGIFVHTIESEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGEI +++ + D +V V +S+++I   I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGEIQKLVDNPDLTVTVEVSDAKIRFTIGSVVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL V+C    QAVDRVS +SS R +AVKL+++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKELTVDCQTFAQAVDRVSTISSERGRAVKLAIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+  P++I FN KYLL+I + +S       + VF L    S   
Sbjct: 300 VNNPDSGSATEELAVGYDRDPIEIGFNAKYLLDITNQLSG-----TDAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372


>gi|325291735|ref|YP_004277599.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3]
 gi|325059588|gb|ADY63279.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3]
          Length = 378

 Score =  353 bits (906), Expect = 2e-95,   Method: Compositional matrix adjust.
 Identities = 179/387 (46%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PA 
Sbjct: 7   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLY+IVRKL DG+++     N  G+ + ++ G S F LQ  PE++FP 
Sbjct: 67  VEQAGATTVPAHLLYEIVRKLPDGSEV-LLATNPDGSTMTVASGRSKFSLQCLPETDFPD 125

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   DLKL AVATDG
Sbjct: 126 LTAGTFSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDG 185

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ ++
Sbjct: 186 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELDVTVEVSDAKIRLTIGSVVLT 245

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+C    +AVDRVS +SS R +AVKL+L++ +L +T
Sbjct: 246 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTNGQLTLT 305

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      ++ +F L  + S   
Sbjct: 306 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 360

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 361 VRDTAGD---------DALYVLMPMRV 378


>gi|150398727|ref|YP_001329194.1| DNA polymerase III subunit beta [Sinorhizobium medicae WSM419]
 gi|150030242|gb|ABR62359.1| DNA polymerase III, beta subunit [Sinorhizobium medicae WSM419]
          Length = 372

 Score =  353 bits (905), Expect = 4e-95,   Method: Compositional matrix adjust.
 Identities = 183/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A  A 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATQAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEV-LLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF L ++ LK L++RT FA++TEE RYYLNGIF H  E   +LKL AVATDG
Sbjct: 120 LTAGTFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK V E+ ++L + D  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDNPDVVVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP SNDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALTDGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN KYLL+I     + ++   E VF L    S   
Sbjct: 300 VNNPDSGSATEEVPVGYESDPLEIGFNAKYLLDI-----TAQLTGSEAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372


>gi|159184247|ref|NP_353331.2| DNA polymerase III subunit beta [Agrobacterium tumefaciens str.
           C58]
 gi|159139574|gb|AAK86116.2| DNA polymerase III, beta chain [Agrobacterium tumefaciens str. C58]
          Length = 372

 Score =  349 bits (896), Expect = 4e-94,   Method: Compositional matrix adjust.
 Identities = 178/387 (45%), Positives = 258/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLY+IVRKL DG+++     N  G+ + ++ G S F LQ  PE++FP 
Sbjct: 61  VEQAGATTVPAHLLYEIVRKLPDGSEV-LLATNPDGSSMTVASGRSKFSLQCLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDG
Sbjct: 120 LTAGTFSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+C    +AVDRVS +SS R +AVKL+L+  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      ++ +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372


>gi|218673040|ref|ZP_03522709.1| DNA polymerase III subunit beta [Rhizobium etli GR56]
          Length = 361

 Score =  347 bits (889), Expect = 2e-93,   Method: Compositional matrix adjust.
 Identities = 179/374 (47%), Positives = 248/374 (66%), Gaps = 17/374 (4%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PASV+  G+ TV AHL
Sbjct: 3   LNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAGATTVPAHL 62

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           LYDIVRKL DG+++     +  G  + +  G S F LQ  PES+FP      + +SF+L 
Sbjct: 63  LYDIVRKLSDGSEV-LLATSPDGGSMTVQSGRSKFSLQCLPESDFPDLTAGTFTHSFKLK 121

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDGHRLAVAEVDIVAQ 191
           +S LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDGHRLA A+VD  + 
Sbjct: 122 ASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLARADVDAPSG 181

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
              MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ +LIDG FP+YQ 
Sbjct: 182 SEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDYQR 241

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311
           VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +TV+NPD G A E +
Sbjct: 242 VIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTVNNPDSGSATEEV 301

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
            V Y+   M+I FN KYLL+I   +S      +E +F L  + S   IR    D      
Sbjct: 302 AVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTLIRDTAGD------ 350

Query: 372 NKVNAFYVLMPMRI 385
              +A YVLMPMR+
Sbjct: 351 ---DALYVLMPMRV 361


>gi|110632364|ref|YP_672572.1| DNA polymerase III subunit beta [Mesorhizobium sp. BNC1]
 gi|110283348|gb|ABG61407.1| DNA polymerase III, beta subunit [Chelativorans sp. BNC1]
          Length = 372

 Score =  345 bits (886), Expect = 5e-93,   Method: Compositional matrix adjust.
 Identities = 180/387 (46%), Positives = 255/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ERS++L+ LGH  R++ER+NTIP+  +VLL A+   LE+KA+  ++E+T A PAS
Sbjct: 1   MRVVLERSNLLKSLGHVHRVVERRNTIPILSNVLLSADGASLEMKATDLDLEMTEAAPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++   K +E G  +++  G S F LQ  P+++FP+
Sbjct: 61  VEQGGATTVPAHLLYDIVRKLPDGAEV-MLKVDENGQTMSVISGRSTFRLQCLPKADFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               ++ + F + S+VL++LVE+T FA++TEE RYYLNGIF H  E D  LKL AVATDG
Sbjct: 120 LTAGQFSHIFRMESAVLRSLVEKTQFAISTEETRYYLNGIFLHTLESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  A    MP IIVPRK VGE+ +++   D +V V LS+++I   I S+ ++
Sbjct: 180 HRLARAEIEAPAGSEGMPGIIVPRKTVGELQKLVDDPDVAVTVELSDTKIRFTIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL ++  +   AVDRVS +SS R +AVKLS+S  ++  T
Sbjct: 240 SKLIDGTFPDYQRVIPVGNDKELLIDRQSFSAAVDRVSTVSSERGRAVKLSISDGQVTFT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E +   YN  P++I FN +YLL++   +S       E  F L  + S   
Sbjct: 300 VNNPDSGSATEEIPAGYNADPIEIGFNARYLLDVAAQLSG-----SEAKFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I       ++  D +V   YVLMPMR+
Sbjct: 355 I-------QDTSDERV--LYVLMPMRV 372


>gi|222147282|ref|YP_002548239.1| DNA polymerase III subunit beta [Agrobacterium vitis S4]
 gi|221734272|gb|ACM35235.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
          Length = 412

 Score =  342 bits (878), Expect = 4e-92,   Method: Compositional matrix adjust.
 Identities = 178/387 (45%), Positives = 251/387 (64%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A    L +KA+  ++E+T A PA+
Sbjct: 41  MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRAEGQSLSMKATDLDLEVTEATPAN 100

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ TV AHLLY+IVRKL DGA++     N  G  + ++ G S F LQ  PE +FP 
Sbjct: 101 IEQAGATTVPAHLLYEIVRKLSDGAEV-LLSTNPDGASMTVASGRSKFSLQCLPEQDFPD 159

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF+L +S LK L++RT FA++TEE RYYLNGI+ H  E D  LKL AVATDG
Sbjct: 160 LTTGSFSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIYLHTIEADGKLKLRAVATDG 219

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK VGE+ +++ + D  V + +S+++I  NI  + M+
Sbjct: 220 HRLARADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLIVALEVSDAKIRFNIGEIVMT 279

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP +NDKE+RV+C    +AVDRVS +SS R +AVKL++    L +T
Sbjct: 280 SKLIDGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLAIGDGHLMLT 339

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y    M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 340 VNNPDSGSATEEVAVGYESDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 394

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 395 IRDTAGD---------DALYVLMPMRV 412


>gi|118590459|ref|ZP_01547861.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
 gi|118436922|gb|EAV43561.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
          Length = 372

 Score =  339 bits (870), Expect = 4e-91,   Method: Compositional matrix adjust.
 Identities = 176/388 (45%), Positives = 256/388 (65%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A+ G + +KA+  ++EI  ++PA 
Sbjct: 1   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGAINLKATDLDLEIVESVPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +++ G+ TV AH+ YDIVRKL +G+Q+     ++  T + I  G S F LQ  PE++FP 
Sbjct: 61  IEMPGATTVPAHMFYDIVRKLPEGSQVVLETTSDNAT-LEIRAGRSKFTLQMLPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               ++ +SF L  + ++ L++ T FA++TEE RYYLNGI+ H  +    L+  AVATDG
Sbjct: 120 LTAGDFSHSFSLTGADIRKLIDATQFAISTEETRYYLNGIYLHTVDAGSGLQFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV   +  A MP IIVPRK VGEI ++L S ++SV+V LS+++I L   S+ ++
Sbjct: 180 HRLAQAEVPAPSGSAGMPGIIVPRKTVGEIQKLLESPEASVQVELSDTKIRLTTGSVILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKE+RV+    ++AVDRVS +SS R +AVKLSL+   L +T
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLTEGHLVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+  P+DI FN +YLL+I + +SS     D  +FRL  S S   
Sbjct: 300 VNNPDSGSATEELAVEYDAEPLDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385
           I          +DN V +  +VLMPMR+
Sbjct: 355 I----------QDNTVDDCLFVLMPMRV 372


>gi|86747129|ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris HaA2]
 gi|86570157|gb|ABD04714.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris HaA2]
          Length = 372

 Score =  339 bits (869), Expect = 5e-91,   Method: Compositional matrix adjust.
 Identities = 178/387 (45%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF L +S +K L++RT FA++TEE RYYLNGI+ H   + +D KL AVATDG
Sbjct: 120 LAAGEMSHSFSLTASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKDAKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   A  A MP +IVPRK VGE+ R++   D+ + + LS  +I   I ++ ++
Sbjct: 180 HRLAQVDLTQPAGAAGMPGVIVPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I   EV     V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +DK          NA YVLMPMR+
Sbjct: 355 IQDRDKK---------NALYVLMPMRV 372


>gi|307942711|ref|ZP_07658056.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
 gi|307773507|gb|EFO32723.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
          Length = 372

 Score =  333 bits (855), Expect = 2e-89,   Method: Compositional matrix adjust.
 Identities = 175/388 (45%), Positives = 247/388 (63%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A+ G L +KA+  ++EI  +IPA 
Sbjct: 1   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGSLNLKATDLDLEIVESIPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++ G+ TV AH+ YDIVRKL DG+Q+      +  T + I  G S F LQ  PES+FP 
Sbjct: 61  VEMGGATTVPAHMFYDIVRKLPDGSQVVLETTGDNST-LEIRAGRSRFTLQMLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               ++ + F L +  ++ L++ T FA++TEE RYYLNGI+ H        +  AVATDG
Sbjct: 120 LTAGDFSHGFALTAGDIRKLIDTTQFAISTEETRYYLNGIYLHTVNTPSGERFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV        MP IIVPRK VGEI ++L   D++V++ LSE++I +   ++ ++
Sbjct: 180 HRLAQAEVTAPNGSHGMPGIIVPRKTVGEIQKLLEEPDANVQIELSETKIRITTGAVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKE+RV+    ++AVDRVS +SS R +AVKLSLS  ++ +T
Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLSDGRMVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y    MDI FN +YLL+I + +SS     D  +FRL  S S   
Sbjct: 300 VNNPDSGSATEELAVEYTSDAMDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385
           I          +DN V +  +VLMPMR+
Sbjct: 355 I----------QDNTVDDCLFVLMPMRV 372


>gi|115522032|ref|YP_778943.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisA53]
 gi|115515979|gb|ABJ03963.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 372

 Score =  332 bits (851), Expect = 6e-89,   Method: Compositional matrix adjust.
 Identities = 174/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A  G L +KA+  ++E+T ++PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAEKGRLSLKATDLDLEVTESLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATPGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               E  +SF L +S +K L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMTHSFALPASDVKRLIDRTQFAISTEETRYYLNGIYLHSAGSAVAATLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +  A MP +IVPRK VGE+ R++   + SV + LS ++I   I  + ++
Sbjct: 180 HRLAQLDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDSEVSVGIELSTNKIRFTIGDVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+ T+   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKTDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I       +  V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +D+D+K        A YVLMPMR+
Sbjct: 355 I--QDRDAK-------GALYVLMPMRV 372


>gi|304392440|ref|ZP_07374381.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130]
 gi|303295544|gb|EFL89903.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130]
          Length = 371

 Score =  330 bits (845), Expect = 3e-88,   Method: Compositional matrix adjust.
 Identities = 173/387 (44%), Positives = 245/387 (63%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ER+++L+ L H  R++ER+NTIP+  +VLL+A DG L +KA+  ++E+T    A 
Sbjct: 1   MRLTLERANLLKSLNHVQRVVERRNTIPILSNVLLKAEDGGLMLKATDLDLEVTEKTTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSAH LYDIVRKL DG+Q+    +   G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQSGATTVSAHTLYDIVRKLPDGSQVLLAVDESNG--LLVRAGRSQFRLQMLPESDFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E+ ++F +  +  K L++RT FA++TEE RYYLNGI+ H  E D K  L AVATDG
Sbjct: 119 LTAAEFTHTFRMGCADFKALIDRTQFAISTEETRYYLNGIYLHAVEADGKEMLRAVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+ +     + MP IIVPRK VGEI ++L   D+ V V LS+S+I   +  + ++
Sbjct: 179 HRLAQAQTEAPDGASGMPGIIVPRKTVGEIQKLLEDPDAFVTVELSDSKIRFTVGEVVLT 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  N KEL ++      AVDRVS ++S R +AVKLS+S  +L ++
Sbjct: 239 SKLIDGTFPDYNRVIPSGNTKELLLDRATFSSAVDRVSTIASDRGRAVKLSISDGQLTLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y++  MDI FN +YLL+I + +S+     +E  F L  + S   
Sbjct: 299 VNNPDSGSAEEELAVGYSDDDMDIGFNSRYLLDITNQLSA-----EETTFMLADAGSPTL 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR K +D          A YVLMPMR+
Sbjct: 354 IREKGQD---------GALYVLMPMRV 371


>gi|90420503|ref|ZP_01228410.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335231|gb|EAS48984.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 374

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 175/389 (44%), Positives = 249/389 (64%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ERS++L+ L H  R++ER+NTIP+  +VLL+     L +KA+  ++EIT + PA+
Sbjct: 1   MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLKTEGEGLRLKATDLDLEITESAPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+ TV AHLLYDIVRKL DGA++S     E GT++ +S G SNF LQ  PES+FP 
Sbjct: 61  GEQEGATTVPAHLLYDIVRKLPDGAEVSLATNAE-GTQMTVSSGRSNFRLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                  ++F+L ++ L  L+ERT FA++TEE RYYLNGI+ H  E D  L+L AVATDG
Sbjct: 120 ITAGTLSHAFKLKAAELGRLIERTQFAISTEETRYYLNGIYLHTIEADGDLQLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLS 236
           HRLA A+    A    MP II+PRK VGE+ ++L  S+ ++ + V LS+++I   I ++ 
Sbjct: 180 HRLARADQKAPAGSEGMPGIIIPRKTVGELQKLLGDSNDEAEISVELSDAKIRFTIGAVV 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M+ +LIDG FP+YQ VIP +NDK L ++      AVDRVS +SS R +AVKL+++  +L 
Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKALTLDRQTFSAAVDRVSTISSERGRAVKLAVADSQLV 299

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +TV++PD G A E + V Y+   ++I FN KYLL+I + +S      DE VF L    S 
Sbjct: 300 LTVNSPDSGTATEELAVGYDSDEIEIGFNAKYLLDITNQLSG-----DETVFMLADPGSP 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+    D+           YVLMPMR+
Sbjct: 355 TLIKDGGDDA---------TLYVLMPMRV 374


>gi|254502919|ref|ZP_05115070.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11]
 gi|222438990|gb|EEE45669.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11]
          Length = 375

 Score =  329 bits (844), Expect = 4e-88,   Method: Compositional matrix adjust.
 Identities = 167/388 (43%), Positives = 252/388 (64%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A+ G L +KA+  ++EI   +PA 
Sbjct: 4   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGALNLKATDLDLEIVETVPAM 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +++ G+ TV AH+ +DIVRKL +G+Q+      +  T + I  G S F LQ  PE++FP 
Sbjct: 64  IEMPGATTVPAHMFFDIVRKLPEGSQVVLETTGD-DTTLEIRAGRSKFTLQMLPETDFPD 122

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               ++ + F L++S ++ L++ T FA++TEE RYYLNGI+ H  +     +  AVATDG
Sbjct: 123 LTAGDFSHGFTLSASDIRKLIDTTQFAISTEETRYYLNGIYLHTVDAANGQQFRAVATDG 182

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV   +  + MP IIVPRK VGEI ++L + ++ V++ LS+++I +  +++ ++
Sbjct: 183 HRLAQAEVSAPSGSSGMPGIIVPRKTVGEIQKLLENPEADVQIELSDTKIRITTDTVVLT 242

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKE+RV+    ++AVDRVS +SS R +AVKL+L   +L +T
Sbjct: 243 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLALGDGRLVLT 302

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN +YLL+I + +SS     D  +FRL  S S   
Sbjct: 303 VNNPDSGSATEELAVEYESDPLEIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 357

Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385
           I          +DN V +  +VLMPMR+
Sbjct: 358 I----------QDNTVDDCLFVLMPMRV 375


>gi|319779751|ref|YP_004139227.1| DNA polymerase III, subunit beta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165639|gb|ADV09177.1| DNA polymerase III, beta subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 372

 Score =  328 bits (841), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 170/387 (43%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ERS++L+ L H  R++ER+NTIP+  +VLL A    LE+KA+  ++E+T A PA 
Sbjct: 1   MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLGAEGASLEMKATDLDLEVTEATPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++   K +E G  + ++ G S+F LQ  P+S+FP 
Sbjct: 61  VERGGATTVPAHLLYDIVRKLADGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                + + F L S  LK L+E+T FA++TEE RYYLNGI+ H +E    LKL +VATDG
Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+D  A    MP II+PRK V E+ +++   D +V   LS+++I   I S+ ++
Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   AVDRVS +SS R +AVKLS+S  ++ + 
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLIIDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E ++  Y+  P++I FN KYLL++     + ++   E  F L  + S   
Sbjct: 300 VNNPDSGSATEELSADYSSDPIEIGFNAKYLLDV-----AAQLTGTEAKFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     ++         A YVLMPMR+
Sbjct: 355 IHDMADET---------ALYVLMPMRV 372


>gi|299133398|ref|ZP_07026593.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2]
 gi|298593535|gb|EFI53735.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2]
          Length = 372

 Score =  328 bits (841), Expect = 9e-88,   Method: Compositional matrix adjust.
 Identities = 168/387 (43%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A++  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRADNARLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF L+++ +K L++RT FA++TEE RYYLNGI+ H   + ++  L AVATDG
Sbjct: 120 LAAGEMTHSFTLSAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGSGKEQTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +IVPRK VGE+ R++   ++ + + LS+ +I   + ++ ++
Sbjct: 180 HRLAQFDLPLPKSAVGMPGVIVPRKTVGEVQRLIEDNEAEISIELSQGKIRFTLANVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +N+KEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELIVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I       D  V +L    S   
Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----DAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++      K N+D    A YVLMPMR+
Sbjct: 355 VQ-----DKANRD----ALYVLMPMRV 372


>gi|154243960|ref|YP_001414918.1| DNA polymerase III subunit beta [Xanthobacter autotrophicus Py2]
 gi|154158045|gb|ABS65261.1| DNA polymerase III, beta subunit [Xanthobacter autotrophicus Py2]
          Length = 373

 Score =  328 bits (841), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 167/388 (43%), Positives = 242/388 (62%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+++L+ L H  R++ER+NTIP+  +VL++A    LE+KA+  ++E+  ++PA 
Sbjct: 1   MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIKAGKNGLELKATDLDLEVVESVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+LYDIVRKL +GAQ+      E GT + +    + F LQ+ PE++FP 
Sbjct: 61  TGQAGATTVPAHVLYDIVRKLPEGAQVQLEAGGERGT-LTVKASRARFSLQTLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE---DLKLCAVATD 177
               E+ ++F++  +  + LV++T FA++TEE RYYLNGI+ H+ E       L AVATD
Sbjct: 120 LAAGEFSHTFKVKGADFRRLVDKTQFAISTEETRYYLNGIYLHVTEGAGGKSMLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA AE++  A  A +P +IVPRK V EI ++L  K++   VSLS ++I + + S+ +
Sbjct: 180 GHRLAQAELEAPAGAAGLPGVIVPRKTVAEIQKLLEDKEAEATVSLSTTKIRVQVGSIVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP  NDK L V+      AVDRVS +SS R +AVKLSL+  K+ +
Sbjct: 240 TSKLIDGTFPDYGRVIPQGNDKTLIVDKDEFAAAVDRVSTVSSERGRAVKLSLAEGKMTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E + V Y   P+DI FN +YLL+I   +       D    +L    S  
Sbjct: 300 SVTNPDSGSATEELEVDYTAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R    DS      K +A YVLMPMR+
Sbjct: 355 LVR----DS-----TKTDALYVLMPMRV 373


>gi|261215133|ref|ZP_05929414.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya]
 gi|260916740|gb|EEX83601.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya]
          Length = 376

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|254694808|ref|ZP_05156636.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya]
          Length = 372

 Score =  327 bits (839), Expect = 1e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372


>gi|256158692|ref|ZP_05456571.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1]
 gi|256254093|ref|ZP_05459629.1| DNA polymerase III subunit beta [Brucella ceti B1/94]
 gi|260169592|ref|ZP_05756403.1| DNA polymerase III subunit beta [Brucella sp. F5/99]
          Length = 372

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372


>gi|91974484|ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB5]
 gi|91680940|gb|ABE37242.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB5]
          Length = 372

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 174/387 (44%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+   +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF LA+S +K L++RT FA++TEE RYYLNGI+ H   + +   L AVATDG
Sbjct: 120 LAAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   A  + MP +IVPRK VGE+ R++   D+ + + LS  +I   I ++ ++
Sbjct: 180 HRLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+      AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I   EV     V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +D+D+K       NA YVLMPMR+
Sbjct: 355 I--QDRDTK-------NALYVLMPMRV 372


>gi|209883689|ref|YP_002287546.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5]
 gi|209871885|gb|ACI91681.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5]
          Length = 372

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 168/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAENAKLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF L ++ +K L++RT FA++TEE RYYLNGI+ H   +  +  L AVATDG
Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAAEQTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +    A MP +IVPRK VGE+ R++   ++ + + LS+++I   + ++ ++
Sbjct: 180 HRLAQFDLPLPKSAAGMPGVIVPRKTVGEVQRLIEDTEAEIAIELSQAKIRFTLANVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +N+KEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELVVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----EAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++      K N+D    A YVLMPMR+
Sbjct: 355 VQ-----DKANRD----ALYVLMPMRV 372


>gi|188579289|ref|YP_001922734.1| DNA polymerase III subunit beta [Methylobacterium populi BJ001]
 gi|179342787|gb|ACB78199.1| DNA polymerase III, beta subunit [Methylobacterium populi BJ001]
          Length = 373

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 173/388 (44%), Positives = 239/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+  D  L++KA+  +IE+T  + A 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGDNGLQLKATDLDIEVTETVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  +SF + +S LK L+E+T FA++TEE RYYLNGI+FH  E +  LKL AVATDG
Sbjct: 120 LAAGELPHSFSIPASELKQLIEKTQFAISTEETRYYLNGIYFHTVEVEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237
           HRLA  E +       MP IIVPRKAV EI +++     SV+V LS ++I L     +++
Sbjct: 180 HRLARVETEAPEDSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL+++  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVAEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ +D            A YVLMPMR+
Sbjct: 355 LIQDRD---------GAPALYVLMPMRV 373


>gi|261221233|ref|ZP_05935514.1| DNA polymerase III subunit beta [Brucella ceti B1/94]
 gi|261759118|ref|ZP_06002827.1| DNA polymerase subunit III [Brucella sp. F5/99]
 gi|265997194|ref|ZP_06109751.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1]
 gi|260919817|gb|EEX86470.1| DNA polymerase III subunit beta [Brucella ceti B1/94]
 gi|261739102|gb|EEY27098.1| DNA polymerase subunit III [Brucella sp. F5/99]
 gi|262551662|gb|EEZ07652.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1]
          Length = 376

 Score =  327 bits (839), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|189023270|ref|YP_001934038.1| DNA polymerase III subunit beta [Brucella abortus S19]
 gi|254696436|ref|ZP_05158264.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731348|ref|ZP_05189926.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292]
 gi|189018842|gb|ACD71564.1| DNA polymerase III, beta chain [Brucella abortus S19]
          Length = 372

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372


>gi|260563085|ref|ZP_05833571.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M]
 gi|261218004|ref|ZP_05932285.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1]
 gi|261314778|ref|ZP_05953975.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10]
 gi|261316661|ref|ZP_05955858.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94]
 gi|261321146|ref|ZP_05960343.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1]
 gi|261324124|ref|ZP_05963321.1| DNA polymerase III subunit beta [Brucella neotomae 5K33]
 gi|261751326|ref|ZP_05995035.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513]
 gi|261755891|ref|ZP_05999600.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686]
 gi|265987733|ref|ZP_06100290.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1]
 gi|265992207|ref|ZP_06104764.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993947|ref|ZP_06106504.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999708|ref|ZP_05467475.2| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9]
 gi|260153101|gb|EEW88193.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M]
 gi|260923093|gb|EEX89661.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1]
 gi|261293836|gb|EEX97332.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1]
 gi|261295884|gb|EEX99380.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94]
 gi|261300104|gb|EEY03601.1| DNA polymerase III subunit beta [Brucella neotomae 5K33]
 gi|261303804|gb|EEY07301.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10]
 gi|261741079|gb|EEY29005.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513]
 gi|261745644|gb|EEY33570.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686]
 gi|262764928|gb|EEZ10849.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003273|gb|EEZ15566.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095428|gb|EEZ19029.1| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9]
 gi|264659930|gb|EEZ30191.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1]
 gi|326537731|gb|ADZ85946.1| DNA polymerase III, beta subunit [Brucella melitensis M5-90]
          Length = 376

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|328541626|ref|YP_004301735.1| DNA polymerase III, beta subunit [polymorphum gilvum SL003B-26A1]
 gi|326411378|gb|ADZ68441.1| DNA polymerase III, beta subunit [Polymorphum gilvum SL003B-26A1]
          Length = 372

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 166/388 (42%), Positives = 245/388 (63%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A  G L++KA+  ++E+   +PA 
Sbjct: 1   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRAEHGALKLKATDLDLEVLETVPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G  TV AH++YDIVRKL +G+Q+      +  T + I  G S F LQ  PE++FP 
Sbjct: 61  IEAPGGTTVPAHMIYDIVRKLPEGSQVVLETTGDNAT-LEIRAGRSRFALQMLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + + F L++  ++ L++ T FA++TEE RYYLNGI+ H     +  K  AVATDG
Sbjct: 120 LTAGTFSHQFTLSAGAIRKLIDTTQFAISTEETRYYLNGIYLHTVDTPQGQKFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV   A  A MP IIVPRK VGEI ++L  +++ V+V +S+++I +    + ++
Sbjct: 180 HRLAQAEVPAPAGAAGMPGIIVPRKTVGEIQKLLEDREAEVQVEISDTKIRVTTGPVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKELRV+    R+AVDRVS +SS R +AVKL+LS  +L + 
Sbjct: 240 SKLIDGTFPDYGRVIPQHNDKELRVDRDEFREAVDRVSTISSERGRAVKLALSEGRLVLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+  P++I FN +YLL+I     + ++  D  +FRL    S   
Sbjct: 300 VNNPDSGSATEELAVEYDSDPLEIGFNSRYLLDI-----AAQLTGDTALFRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKV-NAFYVLMPMRI 385
           +          +DN   +  +VLMPMR+
Sbjct: 355 V----------QDNAAEDCLFVLMPMRV 372


>gi|260546287|ref|ZP_05822027.1| DNA polymerase subunit III [Brucella abortus NCTC 8038]
 gi|260759081|ref|ZP_05871429.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292]
 gi|260760807|ref|ZP_05873150.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260096394|gb|EEW80270.1| DNA polymerase subunit III [Brucella abortus NCTC 8038]
 gi|260669399|gb|EEX56339.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292]
 gi|260671239|gb|EEX58060.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 376

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|254700820|ref|ZP_05162648.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513]
 gi|254705187|ref|ZP_05167015.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686]
 gi|254707297|ref|ZP_05169125.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10]
 gi|254709164|ref|ZP_05170975.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94]
 gi|254713412|ref|ZP_05175223.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1]
 gi|254716231|ref|ZP_05178042.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1]
 gi|256030688|ref|ZP_05444302.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1]
 gi|256045792|ref|ZP_05448670.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060147|ref|ZP_05450329.1| DNA polymerase III subunit beta [Brucella neotomae 5K33]
 gi|256112511|ref|ZP_05453432.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str.
           Ether]
 gi|326408013|gb|ADZ65078.1| DNA polymerase III, beta chain [Brucella melitensis M28]
          Length = 372

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372


>gi|13474647|ref|NP_106216.1| DNA polymerase III subunit beta [Mesorhizobium loti MAFF303099]
 gi|260461962|ref|ZP_05810207.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|14025402|dbj|BAB52002.1| DNA polymerase III beta subunit [Mesorhizobium loti MAFF303099]
 gi|259032209|gb|EEW33475.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 372

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ERS++L+ L H  R++ER+NTIP+  +VLL A    LE+KA+  ++E+T A PA 
Sbjct: 1   MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLSAEGASLEMKATDLDLEVTEATPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++   K +E G  + ++ G S+F LQ  P+S+FP 
Sbjct: 61  VERGGATTVPAHLLYDIVRKLSDGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                + + F L S  LK L+E+T FA++TEE RYYLNGI+ H +E    LKL +VATDG
Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+D  A    MP II+PRK V E+ +++   D +V   LS+++I   I S+ ++
Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   AVDRVS +SS R +AVKLS+S  ++ + 
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLILDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E +   Y+  P++I FN KYLL++     + ++   E  F L  + S   
Sbjct: 300 VNNPDSGSATEELAADYSSDPIEIGFNAKYLLDV-----AAQLTGTEAKFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     ++         A YVLMPMR+
Sbjct: 355 IHDMADET---------ALYVLMPMRV 372


>gi|146337177|ref|YP_001202225.1| DNA polymerase III subunit beta [Bradyrhizobium sp. ORS278]
 gi|146189983|emb|CAL73975.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS278]
          Length = 372

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L ++A+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               E  ++F + +  +K+L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   +  A+MP +IVPRK VGE+ R++   DS +K+ LS+ +I   +  + ++
Sbjct: 180 HRLAQVDLPQPSGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I   EV     V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+        ++DN+ NA YVLMPMR+
Sbjct: 355 IQ--------DRDNR-NALYVLMPMRV 372


>gi|254718226|ref|ZP_05180037.1| DNA polymerase III subunit beta [Brucella sp. 83/13]
 gi|306839966|ref|ZP_07472760.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653]
 gi|306404930|gb|EFM61215.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653]
          Length = 372

 Score =  327 bits (838), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372


>gi|260567347|ref|ZP_05837817.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40]
 gi|260156865|gb|EEW91945.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40]
          Length = 376

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDI+RKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|265983182|ref|ZP_06095917.1| DNA polymerase III subunit beta [Brucella sp. 83/13]
 gi|264661774|gb|EEZ32035.1| DNA polymerase III subunit beta [Brucella sp. 83/13]
          Length = 376

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|225626553|ref|ZP_03784592.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo]
 gi|225618210|gb|EEH15253.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo]
          Length = 397

 Score =  327 bits (837), Expect = 2e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397


>gi|170738369|ref|YP_001767024.1| DNA polymerase III subunit beta [Methylobacterium sp. 4-46]
 gi|168192643|gb|ACA14590.1| DNA polymerase III, beta subunit [Methylobacterium sp. 4-46]
          Length = 373

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 171/388 (44%), Positives = 240/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+++   L+++A+  +IE+T  IPA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLRATDLDIEVTETIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL DG Q+S     E G ++ I  G S F L + PE++FP 
Sbjct: 61  VVDGGATTVPAHVIYDIVRKLPDGVQVSLETTGETG-QMQIRSGRSRFMLGALPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + F+L ++ LK L+++T FA++TEE RYYLNGIFFH    E  L+L AVATDG
Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIETEAGLRLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-LSM 237
           HRLA  E+        MP IIVPRKAV EI +++     SV V LS +++     S +++
Sbjct: 180 HRLARVEMPAPEGSRGMPGIIVPRKAVAEIQKLVEDGGDSVGVELSPAKVRFTFSSGVTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL++   +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVEREQFAKAVDRVSTISSERGRAVKLAVGGGRLSL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+NPD G A E ++V Y   P+DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVNNPDSGSATEELDVDYEAAPLDIGFNARYLLDITAQLDG-----DSALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ K+            A YVLMPMR+
Sbjct: 355 LIQDKE---------GAPALYVLMPMRV 373


>gi|62288993|ref|YP_220786.1| DNA polymerase III subunit beta [Brucella abortus bv. 1 str. 9-941]
 gi|82698934|ref|YP_413508.1| DNA polymerase III subunit beta [Brucella melitensis biovar Abortus
           2308]
 gi|237814483|ref|ZP_04593481.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A]
 gi|62195125|gb|AAX73425.1| DnaN, DNA polymerase III, beta subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615035|emb|CAJ09958.1| DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella
           melitensis biovar Abortus 2308]
 gi|237789320|gb|EEP63530.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A]
          Length = 397

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397


>gi|17988225|ref|NP_540859.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           16M]
 gi|23500918|ref|NP_697045.1| DNA polymerase III subunit beta [Brucella suis 1330]
 gi|163842279|ref|YP_001626683.1| DNA polymerase III subunit beta [Brucella suis ATCC 23445]
 gi|225851548|ref|YP_002731781.1| DNA polymerase III subunit beta [Brucella melitensis ATCC 23457]
 gi|256368467|ref|YP_003105973.1| DNA polymerase III subunit beta [Brucella microti CCM 4915]
 gi|294851412|ref|ZP_06792085.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|17983990|gb|AAL53123.1| DNA polymerase iii, beta chain [Brucella melitensis bv. 1 str. 16M]
 gi|23346771|gb|AAN28960.1| DNA polymerase III, beta subunit [Brucella suis 1330]
 gi|163673002|gb|ABY37113.1| DNA polymerase III, beta subunit [Brucella suis ATCC 23445]
 gi|225639913|gb|ACN99826.1| DNA polymerase III, beta subunit [Brucella melitensis ATCC 23457]
 gi|255998625|gb|ACU47024.1| DNA polymerase III subunit beta [Brucella microti CCM 4915]
 gi|294820001|gb|EFG37000.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
          Length = 397

 Score =  327 bits (837), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397


>gi|323135990|ref|ZP_08071073.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242]
 gi|322399081|gb|EFY01600.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242]
          Length = 372

 Score =  326 bits (836), Expect = 3e-87,   Method: Compositional matrix adjust.
 Identities = 167/387 (43%), Positives = 237/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L  LGH  R++ER+ TIP+  +VL+ A D  L +KA+  ++EIT   PA 
Sbjct: 1   MKVTIERAALLRALGHVHRVVERRTTIPILANVLIDARDDALTLKATDLDLEITEKAPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T+ AH LYDIVRKL +GAQ+S     E G ++ +  G S F L + PES+FP 
Sbjct: 61  VGQPGATTLPAHTLYDIVRKLPEGAQVSLDASGEAG-QLTLRSGRSRFNLSTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               ++ + F+LA + LK L+E+T FA+++EE RYYLNGI+ H  + D  L L AVATDG
Sbjct: 120 VTSGDFSHRFQLAPADLKRLIEKTQFAISSEETRYYLNGIYIHAMDVDGQLMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+   A  A MP +I+PRKAV E+ R++      V V LS +++  +     ++
Sbjct: 180 HRLARLELPAPAGCADMPGVILPRKAVTEVQRLIEDAQGDVSVELSTNKMRFSFGDALLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V      +AVDRVS +SS R +AVK++L+  KL ++
Sbjct: 240 TKLIDGTFPDYSRVIPAGNDKRLTVERDVFAKAVDRVSTISSERGRAVKMALTEGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A+E +   Y+  P+D+ FN +YLL+I   + S     D  +F+L    S   
Sbjct: 300 VTNPDQGSAVEELEADYDGAPLDVGFNARYLLDITQQLDS-----DTALFKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D  S         A YVLMPMR+
Sbjct: 355 IQDRDGAS---------ALYVLMPMRV 372


>gi|170748657|ref|YP_001754917.1| DNA polymerase III subunit beta [Methylobacterium radiotolerans JCM
           2831]
 gi|170655179|gb|ACB24234.1| DNA polymerase III, beta subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 373

 Score =  326 bits (836), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 170/388 (43%), Positives = 238/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+A    L+++A+  +IE+T ++PA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRAEGSGLQLRATDLDIEVTESVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL DGAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VADAGATTVPAHVIYDIVRKLPDGAQVSLETGGESG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + FE+A++ LK L+E+T FA++TEE RYYLNGI+ H    E    + AVATDG
Sbjct: 120 LAAGEMPHGFEIAAADLKRLIEKTQFAISTEETRYYLNGIYLHTLETENGPAMRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237
           HRLA  E+        MP +IVPRKAV EI ++L     +V V LS ++I L     L++
Sbjct: 180 HRLARVEIPAPQGSVGMPGVIVPRKAVAEIQKLLDDGGETVAVDLSPAKIRLRFAGGLTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP +NDK L V      +AVDRVS +SS R +AVKL L+  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPANNDKRLTVERDAFAKAVDRVSTISSERGRAVKLGLAEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVNNPDSGSATEELDVDYEAAGLDIGFNARYLLDITAQLEG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ ++            A YVLMPMR+
Sbjct: 355 LIQDRE---------GAPALYVLMPMRV 373


>gi|161617993|ref|YP_001591880.1| DNA polymerase III subunit beta [Brucella canis ATCC 23365]
 gi|161334804|gb|ABX61109.1| DNA polymerase III, beta subunit [Brucella canis ATCC 23365]
          Length = 397

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDI+RKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397


>gi|239830848|ref|ZP_04679177.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239823115|gb|EEQ94683.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 385

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 14  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 74  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 192

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   +  V V LS+++I   + S+ ++
Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPEVVVTVELSDAKIRFTVGSVVLT 252

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L +       +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSG-----SDAVFMLADAGSPTL 367

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 368 VR-------DTGDEDV--LYVLMPMRV 385


>gi|260755858|ref|ZP_05868206.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870]
 gi|260884883|ref|ZP_05896497.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68]
 gi|260675966|gb|EEX62787.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870]
 gi|260874411|gb|EEX81480.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68]
          Length = 376

 Score =  326 bits (835), Expect = 4e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                +  SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 359 VR-------DTGDEDV--LYVLMPMRV 376


>gi|254690319|ref|ZP_05153573.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870]
 gi|256258573|ref|ZP_05464109.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68]
          Length = 372

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                +  SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 355 VR-------DTGDEDV--LYVLMPMRV 372


>gi|192288435|ref|YP_001989040.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris TIE-1]
 gi|192282184|gb|ACE98564.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris TIE-1]
          Length = 372

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  ++F L +S +K L++RT FA++TEE RYYLNGI+ H   + +   L AVATDG
Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +    MP +IVPRK VGE+ R++   ++ + + LS  +I   + ++ ++
Sbjct: 180 HRLAQLDLTLPSGADGMPGLIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKELRV+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELRVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I   EV     V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +D+DSK       +A YVLMPMR+
Sbjct: 355 I--QDRDSK-------SALYVLMPMRV 372


>gi|163849459|ref|YP_001637502.1| DNA polymerase III subunit beta [Methylobacterium extorquens PA1]
 gi|163661064|gb|ABY28431.1| DNA polymerase III, beta subunit [Methylobacterium extorquens PA1]
          Length = 373

 Score =  326 bits (835), Expect = 5e-87,   Method: Compositional matrix adjust.
 Identities = 173/388 (44%), Positives = 239/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L+ LGH  R++ER+NTIP+  +VLL+  +  L++KA+  +IE+T  + A 
Sbjct: 1   MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH  E +  LKL AVATDG
Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E D       MP IIVPRKAV EI +++     SV+V LS ++I L      + 
Sbjct: 180 HRLARVETDAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239

Query: 239 V-RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL++S  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ +D            A YVLMPMR+
Sbjct: 355 LIQDRD---------GAPALYVLMPMRV 373


>gi|114704370|ref|ZP_01437278.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506]
 gi|114539155|gb|EAU42275.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506]
          Length = 374

 Score =  325 bits (833), Expect = 7e-87,   Method: Compositional matrix adjust.
 Identities = 176/389 (45%), Positives = 244/389 (62%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ERS++L+ L H  R++ER+NTIP+  +VLL+A    L +KA+  +IEIT  + A 
Sbjct: 1   MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLRAKAETLGLKATDLDIEITEEVAAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+ TV AHLLYDIVRKL DGA++     +E GT++ +S G SNF LQ  PE++FP 
Sbjct: 61  GEQEGATTVPAHLLYDIVRKLPDGAEVKLVLNSE-GTQMTVSAGRSNFRLQCLPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  + F + +  L  L+ERT FA++TEE RYYLNGI+ H  + D  L L AVATDG
Sbjct: 120 ITAGELSHGFTMEAGALARLIERTQFAISTEETRYYLNGIYLHTIDADGTLMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLS 236
           HRLA AE+   +    MP IIVPRK VGEI ++L+    D  + V LSES+I   I  + 
Sbjct: 180 HRLARAEMTAPSGSEGMPGIIVPRKTVGEIQKLLADCEDDDEIAVDLSESKIRFKIGRVV 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M+ +LIDG FP+YQ VIP +NDKEL ++  +   AVDRVS +SS R +AVKL+L+  +L 
Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKELTLDRASFSSAVDRVSTISSERGRAVKLTLADSQLT 299

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +TV++PD G A E + V Y    ++I FN +YLL++   +S      +E +F L    S 
Sbjct: 300 LTVNSPDAGTATEELAVGYESEDLEIGFNARYLLDVTSQLSG-----EEAMFVLADPGSP 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I       K+  D   +  YVLMPMR+
Sbjct: 355 TLI-------KDGGDT--STLYVLMPMRV 374


>gi|153007349|ref|YP_001368564.1| DNA polymerase III subunit beta [Ochrobactrum anthropi ATCC 49188]
 gi|151559237|gb|ABS12735.1| DNA polymerase III, beta subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 385

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 14  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 74  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSISVISGKSSFRLQCLPQSDFPE 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH   +E  LKL AVATDG
Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESEGALKLRAVATDG 192

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 252

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L +       +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSG-----SDAVFMLADAGSPTL 367

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 368 VR-------DTGDEDV--LYVLMPMRV 385


>gi|297247410|ref|ZP_06931128.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|297174579|gb|EFH33926.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 397

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                +  SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397


>gi|158422637|ref|YP_001523929.1| DNA polymerase III subunit beta [Azorhizobium caulinodans ORS 571]
 gi|158329526|dbj|BAF87011.1| DNA polymerase III beta chain [Azorhizobium caulinodans ORS 571]
          Length = 372

 Score =  325 bits (833), Expect = 8e-87,   Method: Compositional matrix adjust.
 Identities = 166/387 (42%), Positives = 242/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+++L+ L H  R++ER+NTIP+  +VL++     L +KA+  ++E+   +PA 
Sbjct: 1   MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIRTGTNGLSLKATDLDLEVVETVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH+LYDIVRKL DG+Q+      E G  + +  G + F LQ+ PE++FP 
Sbjct: 61  VGQDGATTVPAHVLYDIVRKLPDGSQVQLEAGGERG-NLTVRAGRARFTLQTLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
               ++ +SF++  +  + LV++T FA++TEE RYYLNGI+ H+ +     KL AVATDG
Sbjct: 120 LAAGDFSHSFKVKGAEFRRLVDKTQFAISTEETRYYLNGIYLHVADAAGTAKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+D     A +P +IVPRK V EI ++L  KD+ V VSLS ++I + + ++ ++
Sbjct: 180 HRLAQAELDAPEGSAGLPGVIVPRKTVAEIQKLLEDKDAEVTVSLSTTKIRVAVGAIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V+ ++   AVDRVS +SS R +AVKLS+   KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPAGNDKILLVDKSDFAAAVDRVSTVSSERGRAVKLSIQDGKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   +       D    +L    S   
Sbjct: 300 VTNPDSGSATEELEVDYAAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    DS      K ++ YVLMPMR+
Sbjct: 355 VR----DS-----TKTDSLYVLMPMRV 372


>gi|148560207|ref|YP_001258051.1| DNA polymerase III subunit beta [Brucella ovis ATCC 25840]
 gi|148371464|gb|ABQ61443.1| DNA polymerase III, beta subunit [Brucella ovis ATCC 25840]
          Length = 397

 Score =  325 bits (832), Expect = 1e-86,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 246/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A + +   Y+  P+DI FN KYLL+I   +S       + VF L  + S   
Sbjct: 325 VNSPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSG-----TDAVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R       +  D  V   YVLMPMR+
Sbjct: 380 VR-------DTGDEDV--LYVLMPMRV 397


>gi|92115635|ref|YP_575364.1| DNA polymerase III subunit beta [Nitrobacter hamburgensis X14]
 gi|91798529|gb|ABE60904.1| DNA polymerase III, beta subunit [Nitrobacter hamburgensis X14]
          Length = 372

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 168/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLKATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+ YDIVRKL DGAQI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATGGATTVPAHIFYDIVRKLPDGAQIVLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF+LA++ +K L++RT FA++TEE RYYLNGI+ H   + ++  L  VATDG
Sbjct: 120 LAAGEMTHSFKLAAADIKRLIDRTQFAISTEETRYYLNGIYLHSAGSAKNATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +I+PRK VGE+ R++   ++ V + LS+ +I   I ++ ++
Sbjct: 180 HRLAQVDLALPNGAEGMPGVIIPRKTVGEVQRLIEDNEAEVGIELSQGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASEPLDIGFNSRYLLDIAAQIEG-----EGAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   DKDSK        A YVLMPMR+
Sbjct: 355 VH--DKDSK-------GALYVLMPMRV 372


>gi|218528085|ref|YP_002418901.1| DNA polymerase III subunit beta [Methylobacterium chloromethanicum
           CM4]
 gi|240136785|ref|YP_002961252.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1]
 gi|254558655|ref|YP_003065750.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4]
 gi|218520388|gb|ACK80973.1| DNA polymerase III, beta subunit [Methylobacterium chloromethanicum
           CM4]
 gi|240006749|gb|ACS37975.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1]
 gi|254265933|emb|CAX21682.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4]
          Length = 373

 Score =  324 bits (830), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 172/388 (44%), Positives = 239/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L+ LGH  R++ER+NTIP+  +VLL+  +  L++KA+  +IE+T  + A 
Sbjct: 1   MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH  E +  LKL AVATDG
Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E +       MP IIVPRKAV EI +++     SV+V LS ++I L      + 
Sbjct: 180 HRLARVETEAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239

Query: 239 V-RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL++S  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ +D            A YVLMPMR+
Sbjct: 355 LIQDRD---------GAPALYVLMPMRV 373


>gi|316931398|ref|YP_004106380.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris DX-1]
 gi|315599112|gb|ADU41647.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris DX-1]
          Length = 372

 Score =  323 bits (829), Expect = 2e-86,   Method: Compositional matrix adjust.
 Identities = 171/387 (44%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  ++F L +S +K L++RT FA++TEE RYYLNGI+ H   +     L AVATDG
Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSSGAASLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +    MP +IVPRK VGE+ R++   ++ + + LS  +I   + ++ ++
Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I   EV     V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +D+DSK       +A YVLMPMR+
Sbjct: 355 I--QDRDSK-------SALYVLMPMRV 372


>gi|220920056|ref|YP_002495357.1| DNA polymerase III subunit beta [Methylobacterium nodulans ORS
           2060]
 gi|219944662|gb|ACL55054.1| DNA polymerase III, beta subunit [Methylobacterium nodulans ORS
           2060]
          Length = 373

 Score =  323 bits (827), Expect = 3e-86,   Method: Compositional matrix adjust.
 Identities = 170/388 (43%), Positives = 240/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+++   L++KA+  +IE+T  IPA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLKATDLDIEVTETIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     + G ++ I  G S F L + PE++FP 
Sbjct: 61  VADGGATTVPAHVIYDIVRKLPEGAQVSLETTGDTG-QMLIRSGRSRFTLGALPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + F+L ++ LK L+++T FA++TEE RYYLNGIFFH    E  +KL AVATDG
Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIEAEGGVKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+        MP IIVPRKAV EI +++     SV V +S +++     +  M 
Sbjct: 180 HRLARVEMPAPEGSHGMPGIIVPRKAVAEIQKLVEDGGDSVGVEISSAKVRFTFSTGVML 239

Query: 239 V-RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL+++  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVERDQFAKAVDRVSTISSERGRAVKLAVAGGRLSL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+NPD G A E ++  Y   P+DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVNNPDSGSATEELDADYEAAPLDIGFNARYLLDITAQLDG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ KD            A YVLMPMR+
Sbjct: 355 LIQDKD---------GAPALYVLMPMRV 373


>gi|39933082|ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris CGA009]
 gi|39652707|emb|CAE25446.1| DNA polymerase III beta subunit [Rhodopseudomonas palustris CGA009]
          Length = 372

 Score =  322 bits (826), Expect = 5e-86,   Method: Compositional matrix adjust.
 Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  ++F L +S +K L++RT FA++TEE RYYLNGI+ H   + +   L AVATDG
Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +    MP +IVPRK VGE+ R++   ++ + + LS  +I   + ++ ++
Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I   EV     V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +D+DSK       +A YVLMPMR+
Sbjct: 355 I--QDRDSK-------SALYVLMPMRV 372


>gi|296445221|ref|ZP_06887181.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
 gi|296257395|gb|EFH04462.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
          Length = 371

 Score =  320 bits (820), Expect = 2e-85,   Method: Compositional matrix adjust.
 Identities = 176/387 (45%), Positives = 240/387 (62%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ER+ +L  LGH  R++ER+ TIP+  +VLL A D  L +KA+  ++EIT    A 
Sbjct: 1   MKITIERAALLRALGHVHRVVERRTTIPILANVLLDAAD-GLLLKATDLDLEITEKAAAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ T+ AH LYDIVRKL DGAQ+S     E G  + +  G S F LQS PES+FP 
Sbjct: 60  IGQKGATTLPAHTLYDIVRKLPDGAQVSLEGTGEQGLFL-LRSGRSRFQLQSLPESDFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E+ + F+LA + LK L+ +T FA+++EE RYYLNGIF H  E +    L AVATDG
Sbjct: 119 VTSGEFSHRFQLAPADLKKLILKTQFAISSEETRYYLNGIFLHSTEVEGHQLLRAVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+   A  A MP +I+PRKAV E+LR++     +V++ LS +++  +     ++
Sbjct: 179 HRLARVELPAPAGAAGMPGVILPRKAVNEVLRLVEDAQGAVEIELSTNKMRFSFGETVLT 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V   + R+AVDRVS +SS R +AVKL+LS  KL ++
Sbjct: 239 TKLIDGTFPDYGRVIPAGNDKRLTVERASFREAVDRVSTISSERGRAVKLALSEGKLVLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A+E +   Y+  P+DI FN +YLL+I D + S     D  +FRL    S   
Sbjct: 299 VTNPDQGSAVEEIEADYDGPPIDIGFNSRYLLDIADQLDS-----DTALFRLADPGSPTL 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D  S         A YVLMPMR+
Sbjct: 354 IQDRDGAS---------ALYVLMPMRV 371


>gi|75674201|ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter winogradskyi Nb-255]
 gi|74419071|gb|ABA03270.1| DNA polymerase III, beta subunit [Nitrobacter winogradskyi Nb-255]
          Length = 372

 Score =  319 bits (817), Expect = 5e-85,   Method: Compositional matrix adjust.
 Identities = 164/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDI+RKL DGAQI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TGTVGSTTVPAHMFYDIIRKLPDGAQIVLEGDGDRSV-LTIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF LA++ LK L++RT FA++TEE RYYLNGI+ H      +  L  VATDG
Sbjct: 120 LAAGEMTHSFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGTANNATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +I+PRK VGE+ R++   ++ + + LS+ +I   + ++ ++
Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D+DS+        A YVLMPMR+
Sbjct: 355 VH--DRDSR-------GALYVLMPMRV 372


>gi|254472242|ref|ZP_05085642.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062]
 gi|211958525|gb|EEA93725.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062]
          Length = 372

 Score =  318 bits (815), Expect = 1e-84,   Method: Compositional matrix adjust.
 Identities = 167/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+++L+ L H  R++ER+NTIP+  +V+LQA  G L++KA+  ++E+  +I A 
Sbjct: 1   MKVTLERTELLKSLTHVHRVVERRNTIPILSNVMLQAEGGNLKLKATDLDLEVVESIAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AH++Y+IVRKL DG+Q+      +  T + I  G S F LQ  P ++FP 
Sbjct: 61  VETPGATTVPAHMIYEIVRKLPDGSQVVLETSGDDST-MEIRAGRSRFALQILPVTDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E+ +SF + +  ++ L++ T FA++TEE RYYLNGI+ H  +  E L+  AVATDG
Sbjct: 120 LTAGEFSHSFTMTAGGIRKLIDSTQFAISTEETRYYLNGIYMHSLDIGEGLRFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++       MP IIVPRK VGEI ++L   +  +KV +SE++I   I  + ++
Sbjct: 180 HRLAQAELEAPEGSDGMPGIIVPRKTVGEIQKLLDDPEVEIKVEISETKIRFTIGDIILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDKELRV+    ++AVDRVS ++S R +AVK++LS  K+ +T
Sbjct: 240 SKLIDGTFPDYERVIPKGNDKELRVDRDVFKEAVDRVSTIASDRGRAVKMALSEGKIVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y+    +I FN KYLL+I   + +     D  +F L  S S   
Sbjct: 300 VTNPDSGTATEEVAVEYDNEEFEIGFNSKYLLDIAAQLEA-----DTALFTLADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR +  D          A YVLMPMR+
Sbjct: 355 IRDEGSD---------EAIYVLMPMRV 372


>gi|90421530|ref|YP_529900.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB18]
 gi|90103544|gb|ABD85581.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 372

 Score =  317 bits (812), Expect = 2e-84,   Method: Compositional matrix adjust.
 Identities = 172/387 (44%), Positives = 242/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VLL+A  G L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLLRAEKGRLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
               E  +SF L ++ +K L++RT FA++TEE RYYLNGI+ H         L AVATDG
Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHGAGTAAAATLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +  A MP +IVPRK VGE+ R++   +++V + LS  +I   +  + ++
Sbjct: 180 HRLAQVDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDTEAAVGIELSVGKIRFTLGDVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I   EV     V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +D+D+K        A YVLMPMR+
Sbjct: 355 V--QDRDAK-------GALYVLMPMRV 372


>gi|27375940|ref|NP_767469.1| DNA polymerase III subunit beta [Bradyrhizobium japonicum USDA 110]
 gi|27349078|dbj|BAC46094.1| DNA polymerase III beta chain [Bradyrhizobium japonicum USDA 110]
          Length = 372

 Score =  316 bits (810), Expect = 3e-84,   Method: Compositional matrix adjust.
 Identities = 170/389 (43%), Positives = 241/389 (61%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               +  +SF LA+  +K L++RT FA++TEE RYYLNGI+ H     +   L  VATDG
Sbjct: 120 LAAGDMSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRLA  ++D+V       MP +IVPRK VGE+ R++   ++ + + LS+++I   I ++ 
Sbjct: 180 HRLA--QLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +LIDG FP+Y  VIP  NDKEL V+  +   AVDRVS +SS R +AVKLSLS  KL 
Sbjct: 238 LTSKLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPGKLV 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++V NPD G A E + V Y    +DI FN +YLL+I   I   EV       RL    S 
Sbjct: 298 LSVTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-EV----ATLRLADPGSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  +D+D K       +A YVLMPMR+
Sbjct: 353 TLV--QDRDDK-------SALYVLMPMRV 372


>gi|163867416|ref|YP_001608613.1| DNA polymerase III subunit beta [Bartonella tribocorum CIP 105476]
 gi|161017060|emb|CAK00618.1| DNA polymerase III, beta chain [Bartonella tribocorum CIP 105476]
          Length = 373

 Score =  315 bits (808), Expect = 6e-84,   Method: Compositional matrix adjust.
 Identities = 165/387 (42%), Positives = 254/387 (65%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV+R+  L+ LG   R++ER+NT+P+  +VL+ A +G +++K +  ++E+T +   +
Sbjct: 1   MRITVDRNQFLKSLGRVHRVVERRNTVPILSNVLIDAENGHVQLKTTDLDLEVTESFTVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDI+RKL DG +I    +    + +++  G  +F LQ  P+++FP 
Sbjct: 61  VEHAGATTVPAHLLYDIIRKLPDGNEIVLSVDENQASTMSVVSGCVHFQLQCLPKADFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH IN++ LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSASGLKHLLDCTQFAISTEETRYYLNGIYFHVINDDVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  E++  + +  MP +IVPRKAVGE+ ++LS + D  V + LSE++I  ++ S+  +
Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDGDVCIELSETKIRFSVGSVIFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL VN  +   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELVVNRQDFSSAVDRVSTISSDRGRAVKLTIEHGQLRLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A + ++V Y+  P++I FN +YLL+I   +SS     DE+VF L  + +   
Sbjct: 301 VNSPDSGSAEDQLSVTYSSEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D           +  YVLMP+R+
Sbjct: 356 IRDND---------DADVLYVLMPIRV 373


>gi|240849790|ref|YP_002971178.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup]
 gi|240266913|gb|ACS50501.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup]
          Length = 373

 Score =  315 bits (806), Expect = 9e-84,   Method: Compositional matrix adjust.
 Identities = 169/388 (43%), Positives = 255/388 (65%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV+RS  L+ LG   R++ER+NT+P+  +VL+ A +G +++KA+  ++E+T +   +
Sbjct: 1   MRITVDRSQFLKSLGRVHRVVERRNTVPILSNVLIDAENGSVQLKATDLDLEVTESFAVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+ TV AHLLYDI+RKL D  ++     EN+ GT +++  G ++F LQ  P+++FP
Sbjct: 61  VKQAGATTVPAHLLYDIIRKLPDSNEVVLSVDENQAGT-MSVVSGCAHFQLQCLPKADFP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDG 178
            +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+ H IN+  LKL  VATDG
Sbjct: 120 ESLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYLHVINDGVLKLRLVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237
           HRLA  E++  + +  MP +IVPRKAVGE+ ++LS + DS V + LSE++I  ++ S+  
Sbjct: 180 HRLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDSDVCIELSETKIRFSVGSVIF 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+YQ VIP  NDKEL VN  +   AVDRVS +SS R +AVKL++   +L +
Sbjct: 240 TSKLIDGTFPDYQRVIPLGNDKELIVNRQDFSSAVDRVSTISSDRGRAVKLTIEHRQLRL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V++PD G A + ++V Y   P++I FN +YLL+I   +SS     DE+VF L  + +  
Sbjct: 300 VVNSPDSGSAEDQLSVTYASEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPA 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IR  D           +  YVLMP+R+
Sbjct: 355 LIRDND---------DADVLYVLMPIRV 373


>gi|85713965|ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A]
 gi|85699091|gb|EAQ36959.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A]
          Length = 372

 Score =  314 bits (805), Expect = 1e-83,   Method: Compositional matrix adjust.
 Identities = 163/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLSAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS +V AH+ YDIVRKL +GAQI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TGTIGSTSVPAHMFYDIVRKLPEGAQILLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  ++F LA++ LK L++RT FA++TEE RYYLNGI+ H   N +   L  VATDG
Sbjct: 120 LAAGEMTHAFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGNAKSATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +I+PRK VGE+ R++   ++ + + LS+ +I   I ++ ++
Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D+DS+        A YVLMPMR+
Sbjct: 355 VH--DRDSR-------GALYVLMPMRV 372


>gi|182679952|ref|YP_001834098.1| DNA polymerase III subunit beta [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635835|gb|ACB96609.1| DNA polymerase III, beta subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 371

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 165/388 (42%), Positives = 237/388 (61%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK+T+ER+ +L+ LGH  R++ER+NTIP+  +VLL ++ DGLL +KA+  ++E+T  + A
Sbjct: 1   MKVTLERAALLKALGHVHRVVERRNTIPILSNVLLHSDGDGLL-LKATDLDLEVTERLTA 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G  T+ AH+LYDIVRKL DG+QIS   E      + +  G S F LQS PES+FP
Sbjct: 60  ETGTQGGTTLPAHILYDIVRKLPDGSQISL--ETTEAGPLQLRSGRSRFTLQSLPESDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATD 177
                 +  +F L +  LK L+++T FA+++EE RYYLNGIF H  E +  + L AVATD
Sbjct: 118 DLAAGTFEQTFTLKAGDLKRLIDKTQFAISSEETRYYLNGIFMHTTEVEGHVMLRAVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  E+      + MP II+PRK V E+ +++  +   VK+ +S ++I      + +
Sbjct: 178 GHRLARVEIPAPQGASGMPGIIIPRKTVAEVQKLVEDQAQEVKLEVSPTKIRFTFGEVVL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP  NDK L V+    + AVDRVS +SS R +AVKL+L+  KL +
Sbjct: 238 TSKLIDGTFPDYARVIPSGNDKFLTVDRGPFQDAVDRVSTISSERGRAVKLALAEGKLTL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A+E + V Y+  P+DI FN +YLL+I   + S     D  +F+     S  
Sbjct: 298 SVTNPDSGSAVEELEVDYDAAPIDIGFNARYLLDIAAQLDS-----DTALFKFADPGSPT 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +D  S         A YVLMPMR+
Sbjct: 353 LVLDRDGAS---------ALYVLMPMRV 371


>gi|49474937|ref|YP_032978.1| DNA polymerase III subunit beta [Bartonella henselae str.
           Houston-1]
 gi|49237742|emb|CAF26934.1| DNA polymerase III, beta chain [Bartonella henselae str. Houston-1]
          Length = 373

 Score =  313 bits (802), Expect = 3e-83,   Method: Compositional matrix adjust.
 Identities = 169/387 (43%), Positives = 253/387 (65%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV+R+ +L+ LG   R++ER+NT+P+  +VL+ A+   +++KA+  ++E+T +  A+
Sbjct: 1   MRITVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFVAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ITV AHLLYDIVRKL DG++I    +    + +++  G +NF LQ  P+ +FP 
Sbjct: 61  IKQEGAITVPAHLLYDIVRKLPDGSEIVLSVDMNQASTMSVVSGCANFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH I++  LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSTSGLKHLLDCTQFAISTEETRYYLNGIYFHVIDDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  + +  MP +IVPRK VGE+ ++LS + D  V V LSE++I  +I S+  +
Sbjct: 181 RLAQVDMEAPSGVEGMPGVIVPRKTVGELQKLLSEEVDEDVCVELSETKIRFSIGSVVFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  +   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNRQDFSSAVDRVSTISSDRGRAVKLTIEQGQLKLI 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A + + V Y   P++I FN +YLL+I   +SS     DE+VF L  + +   
Sbjct: 301 VHNPDSGSAEDQLAVTYTSDPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR       NN     +A YVLMP+R+
Sbjct: 356 IR-------NN--GVADALYVLMPIRV 373


>gi|298290590|ref|YP_003692529.1| DNA polymerase III subunit beta [Starkeya novella DSM 506]
 gi|296927101|gb|ADH87910.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506]
          Length = 371

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 164/386 (42%), Positives = 232/386 (60%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+++L+ L H  R++ER+NTIP+  +VL++ +   L ++A+  +IEI   I A 
Sbjct: 1   MKVTVERAELLKSLAHVHRVVERRNTIPILANVLMRTDARGLALRATDLDIEIVETIAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH +YDIVRKL +GAQ+      + GT + +  G S F LQ+ PE+EFP 
Sbjct: 61  VGQEGATTVPAHTIYDIVRKLPEGAQVQIETSGDRGT-LTVRAGRSRFALQTLPETEFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDGH 179
               E  + F L +  LK LV++T FA++TEE RYYLNGI+ H+ +     L AVATDGH
Sbjct: 120 LAAGEMTHRFTLPAGELKRLVDKTQFAISTEETRYYLNGIYLHVADASGPVLRAVATDGH 179

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A+    A    MP +IVPRKAV EI R+    ++ V V LS ++I ++++ + ++ 
Sbjct: 180 RLAQAQTTAPAGATGMPGVIVPRKAVAEIQRLAEDAEAEVTVELSTAKIRVSLDRVVLTS 239

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP  NDK L V+  +   AVDRVS ++S R +AVKLS+   KL ++V
Sbjct: 240 KLIDGTFPDYGRVIPLGNDKTLVVDKADFASAVDRVSTVASERGRAVKLSIGDGKLTLSV 299

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NPD G A E + V Y   P+DI FN +YLL+I   I            +L    S   +
Sbjct: 300 TNPDSGSATEEIEVEYAAEPIDIGFNSRYLLDITSQIEG-----GTAELKLADPGSPTLV 354

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +K           A YVLMPMR+
Sbjct: 355 QDPEKR---------GALYVLMPMRV 371


>gi|49473789|ref|YP_031831.1| DNA polymerase III subunit beta [Bartonella quintana str. Toulouse]
 gi|49239292|emb|CAF25618.1| DNA polymerase III, beta chain [Bartonella quintana str. Toulouse]
          Length = 373

 Score =  313 bits (801), Expect = 4e-83,   Method: Compositional matrix adjust.
 Identities = 165/387 (42%), Positives = 251/387 (64%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +TV+R+ +L+ LG   R++ER+NT+P+  +VL+ A+   +++KA+  ++E+T +  A+
Sbjct: 1   MHVTVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFMAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV AHLLYDIVRKL DG++I    +    + +++  G ++F LQ  P+ +FP 
Sbjct: 61  VKQAGAITVPAHLLYDIVRKLLDGSEIVLSVDMNQASTMSVVSGCAHFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ ++  LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  + +  MP II+PRKAVGE+ ++LS + + +V V LSE++I  ++ S+  +
Sbjct: 181 RLAQVDMEAPSGVKDMPGIIIPRKAVGELQKLLSEEINDNVCVELSETKIRFSVGSVVFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  N   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNKQNFSSAVDRVSTISSDRGRAVKLTIEQGQLKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A + +   Y   P++I FN +YLL+I   +S      DE+VF L  + +   
Sbjct: 301 VHNPDSGSAEDQLAATYTSDPLEIGFNSRYLLDIAGQLSG-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D           NA YVLMP+R+
Sbjct: 356 IRDND---------DANALYVLMPIRV 373


>gi|217979804|ref|YP_002363951.1| DNA polymerase III subunit beta [Methylocella silvestris BL2]
 gi|217505180|gb|ACK52589.1| DNA polymerase III, beta subunit [Methylocella silvestris BL2]
          Length = 372

 Score =  311 bits (797), Expect = 1e-82,   Method: Compositional matrix adjust.
 Identities = 163/387 (42%), Positives = 237/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH  R++ER+NTIP+  +VLL+A    L +KA+  ++E+T  + A 
Sbjct: 1   MKVTLERAALLKSLGHVHRVVERRNTIPILSNVLLRAEGKSLLLKATDLDLEVTERLAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G  T+ AH LYDIVRKL DG+Q+S     + G ++ +  G S F LQ+ P+S+FP 
Sbjct: 61  VGVAGGTTLPAHTLYDIVRKLPDGSQVSLEIAGDSG-QLLLRSGRSRFNLQTLPDSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               ++ + F L  + LK L+E+T FA++ EE RYYLNGIF H  E +    L AVATDG
Sbjct: 120 LAAGDFSHDFLLPPADLKRLIEKTQFAISNEETRYYLNGIFMHSMEAEGASVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+      + MP +IVPRKAV E+ +++    + ++V LS ++       + ++
Sbjct: 180 HRLARVEIACPKGASGMPGVIVPRKAVTEVQKLIEDLSADIRVELSTTKARFTFGDVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V       AVDRVS +SS R +AVKL+++  KL ++
Sbjct: 240 TKLIDGTFPDYMRVIPAGNDKRLIVERGPFAAAVDRVSTISSERGRAVKLAIADGKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E ++V Y+  P+DI FN +YLL+I + + S     D  +F+L    S   
Sbjct: 300 VTNPDSGSAQEELDVDYDSTPLDIGFNARYLLDITEQLDS-----DTALFKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ +D  S         A YVLMPMR+
Sbjct: 355 VQDRDGAS---------ALYVLMPMRV 372


>gi|121601944|ref|YP_989527.1| DNA polymerase III subunit beta [Bartonella bacilliformis KC583]
 gi|120614121|gb|ABM44722.1| DNA polymerase III, beta subunit [Bartonella bacilliformis KC583]
          Length = 373

 Score =  305 bits (782), Expect = 6e-81,   Method: Compositional matrix adjust.
 Identities = 165/387 (42%), Positives = 248/387 (64%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T++R+  L+ LG   R++ER+NT+P+  +VL+ A+   + +KA+  ++EIT      
Sbjct: 1   MRVTIDRNQFLKSLGCVHRVVERRNTVPILSNVLIDADSDGMRLKATDLDLEITEFSVPH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G ITV AHLLYDIVRKL DG +I    + +    +++  G +NF LQ FP+ +FP 
Sbjct: 61  IEQTGGITVPAHLLYDIVRKLPDGNEIILAVDADRPNTMSVISGFANFRLQGFPKMDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLCAVATDGH 179
           +   ++ + F L +S LK+L++ T FA++TEE RYYLNGI+FHI N+  LKL  VATDGH
Sbjct: 121 SLPGQFNFRFSLLASDLKHLLDCTQFAISTEETRYYLNGIYFHIVNDGALKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  +    MP +I+PRK VGE+ R+LS + D+ V + LSE++I  ++ S+ ++
Sbjct: 181 RLAQVDMEAPSGSEGMPGVIIPRKTVGELQRLLSEEADNYVCIELSETKIRFSVGSVVLT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  +    VDRVS +SS R +AVKL++ + +L   
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLTVNRRDFSSTVDRVSTISSDRGRAVKLTIENGQLRFV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   +S      DE+VF LD + +   
Sbjct: 301 VNNPDSGSAEDQLVADYASDPLEIGFNSRYLLDIAAQLSG-----DEIVFMLDEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    DS +      NA YVLMP+R+
Sbjct: 356 IR----DSHD-----TNALYVLMPIRV 373


>gi|163797311|ref|ZP_02191264.1| ApaG [alpha proteobacterium BAL199]
 gi|159177402|gb|EDP61958.1| ApaG [alpha proteobacterium BAL199]
          Length = 373

 Score =  305 bits (781), Expect = 7e-81,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 242/387 (62%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT++R+ +L+ L H   ++ER+NTIP+  +VLL+A DG L + A+  ++++  ++  S
Sbjct: 1   MKITIDRAALLKPLAHVQSVVERRNTIPILANVLLRAADGTLSLTATDMDLDVVESVGCS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G  TV AH LY+IVRKLQDG+++      + G  + I  G SNF L + P  EFP+
Sbjct: 61  VDQPGQTTVPAHTLYEIVRKLQDGSEVELTAVGDSG-RMTIRAGRSNFSLPTLPMEEFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK-LCAVATDG 178
              +    SF L+++  K L++RT FA++TEE RYYLNGIF H     D+  L AVATDG
Sbjct: 120 LSGDTLPTSFVLSAADAKTLIDRTRFAISTEETRYYLNGIFLHEAKAGDVAVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +    A MP++IVPRKAV EI +++   D  V+VSLSE+++    ES  ++
Sbjct: 180 HRLARVQMPLPTGAAGMPAVIVPRKAVQEIRKLIEETDGDVQVSLSENKLRFAFESSVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK LRV  +  ++AVDRV+ +S+ + ++VKLSL+S  L ++
Sbjct: 240 TKLIDGTFPDYERVIPTGNDKMLRVESSMFKRAVDRVATISTEKSRSVKLSLTSGTLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD  +A E ++V Y    ++I FN +YL++I D I  DE    + VF +  + S   
Sbjct: 300 ANSPDNAQATEEVDVDYAAAAIEIGFNSRYLMDIADQI--DE--GSKAVFAMADAASPTV 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +  D            YVLMPMR+
Sbjct: 356 VTDESDD---------GTLYVLMPMRV 373


>gi|148251628|ref|YP_001236213.1| DNA polymerase III subunit beta [Bradyrhizobium sp. BTAi1]
 gi|146403801|gb|ABQ32307.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. BTAi1]
          Length = 372

 Score =  305 bits (780), Expect = 1e-80,   Method: Compositional matrix adjust.
 Identities = 168/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L ++A+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               +  ++F + +  +K+L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGDMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   A  A+MP +IVPRK VGE+ R++   DS +++ LS+ +I   +  + ++
Sbjct: 180 HRLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIRIELSQGKIRFTLGQVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS  +L ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKADFAAAVDRVSTISSERGRAVKLALSPGRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I   EV     V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYAADALDIGFNSRYLLDIAAQIEG-EV----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+        ++DN+ NA YVLMPMR+
Sbjct: 355 IQ--------DRDNR-NALYVLMPMRV 372


>gi|312112797|ref|YP_004010393.1| DNA polymerase III subunit beta [Rhodomicrobium vannielii ATCC
           17100]
 gi|311217926|gb|ADP69294.1| DNA polymerase III, beta subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 373

 Score =  300 bits (769), Expect = 2e-79,   Method: Compositional matrix adjust.
 Identities = 158/388 (40%), Positives = 237/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M+  V+R+ +L  LGH   I+ER+NTIP+  ++L+ A+ DG L  KA+  ++E   A+PA
Sbjct: 1   MRFVVDRNAMLRALGHITGIVERRNTIPILSNILIGADRDGGLTFKATDLDMEAVEAVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+V G++TV AH L+DIVRKL DGA+I   ++ E G  + ++ G ++F L   P  +FP
Sbjct: 61  KVEVTGAVTVPAHTLHDIVRKLPDGAEIRIERKGEEG-RLKVATGRASFELAILPADDFP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATD 177
              + E    F + S  LK L E+  FA++TEE RYYLNGI+ H     E  KL AVATD
Sbjct: 120 DMGQTELPTRFTVDSGELKRLFEKARFAISTEETRYYLNGIYLHAVDGPEGGKLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  E    A    MP +IVPRKAVGE++++L S  + V+V+LS ++I   +  + +
Sbjct: 180 GHRLAQVETACPAGAGGMPGVIVPRKAVGEVIKLLESGAAPVEVTLSPAKIRFAVGDVVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP +N K L +   +L +AVDRVS +SS + +AVKL+ +  +L +
Sbjct: 240 TSKLIDGSFPDYARVIPTTNKKLLLLENADLVKAVDRVSTLSSEKGRAVKLNAAEGRLVV 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           + +NP+ G A E ++  Y + P++I FN +YLL+I   I        + +F+L   +S  
Sbjct: 300 SANNPESGSATEEISAEYQDEPLEIGFNARYLLDITGQIDG-----TKALFKLADGSSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I         + +   +A YVLMPMR+
Sbjct: 355 LI---------SDETDASALYVLMPMRV 373


>gi|319407987|emb|CBI81641.1| DNA polymerase III, beta chain [Bartonella schoenbuchensis R1]
          Length = 373

 Score =  300 bits (767), Expect = 3e-79,   Method: Compositional matrix adjust.
 Identities = 161/387 (41%), Positives = 249/387 (64%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT++R+  L+ L    R++ER+NTIP+  +VL+ A+   +++KA+  ++E+  +  A 
Sbjct: 1   MHITIDRNQFLKSLNRVHRVVERRNTIPILSNVLINASGDGVQLKATDLDLEVIESSLAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ITV AHLLYDIVRKL  G++I    +N     +++  G +NF LQ  P+ +FP 
Sbjct: 61  VEQEGAITVPAHLLYDIVRKLSSGSEIVLKVDNNQANTMSVVSGCANFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++   F L++S LK L + T FA++TEE RYYLNGI+FH+ ++  LKL  VATDGH
Sbjct: 121 SLPGQFSCCFSLSASDLKRLFDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  ++I  MP +I+PRKAVGE+ ++LS + +  V + LSE++I  ++ S+ ++
Sbjct: 181 RLAQVDMEAPSEIKDMPGVIIPRKAVGELQKLLSEETEGDVSIELSETKIRFSVGSVVLT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP +NDK+L VN  +   AVDRVS +SS R +AVKL++ + +L + 
Sbjct: 241 SKLIDGTFPEYQRVIPLNNDKKLAVNRQDFSAAVDRVSTISSDRGRAVKLTIENGQLKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   ++S     DE+VF L  + +   
Sbjct: 301 VNNPDSGSAEDQLVADYTSDPLEIGFNSRYLLDIAAQLTS-----DEMVFMLADAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D  +         A YVLMP+R+
Sbjct: 356 IRESDDAA---------ALYVLMPIRV 373


>gi|319405029|emb|CBI78639.1| DNA polymerase III, beta chain [Bartonella sp. AR 15-3]
          Length = 373

 Score =  299 bits (766), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 165/389 (42%), Positives = 250/389 (64%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ RS +L+ LG   RI+ER+NTIP+  +VL+ A+DG +++KA+  ++EIT +   +
Sbjct: 1   MRVTISRSQLLKSLGRVHRIVERRNTIPILSNVLIDASDGRMQLKATDLDLEITESSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D +++    +    + ++I+ G +NF LQ  P+ +FP 
Sbjct: 61  IEQSGAITVPAHLLYDIVRKLLDDSEVILDVDESQASTMSITSGCTNFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FHI  +D+ KL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASKLKYLIDCTQFAMSTEETRYYLNGIYFHIISDDISKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
           RL  A+VDI A +    MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ 
Sbjct: 181 RL--AQVDIEAPLGSDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVI 238

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +LIDG FP YQ VIP  NDK+L +N  +   AVDRVS +SS R +AVKL +    + 
Sbjct: 239 LTSKLIDGVFPEYQRVIPLKNDKKLIINRRDFSSAVDRVSTISSDRGRAVKLMIEKGLVR 298

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
             V+NPD G A + +   Y   P++I FN +YLL+I   +SS     DE++F    S + 
Sbjct: 299 FVVNNPDSGSAKDQLVADYAFDPLEIGFNSRYLLDIAAQLSS-----DEMIFTFADSGAP 353

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             IRG       N D   ++ YVLMP+R+
Sbjct: 354 TLIRG-------NSDT--DSLYVLMPIRV 373


>gi|154250460|ref|YP_001411284.1| DNA polymerase III subunit beta [Parvibaculum lavamentivorans DS-1]
 gi|154154410|gb|ABS61627.1| DNA polymerase III, beta subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 372

 Score =  299 bits (765), Expect = 5e-79,   Method: Compositional matrix adjust.
 Identities = 158/387 (40%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ER  +L+ L H   ++ER+NTIP+  +VL++A DG L + A+  +IE+  AI A 
Sbjct: 1   MKITIERGALLKSLNHVQSVVERRNTIPILSNVLIKAEDGQLSLTATDLDIEVVEAIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T SAH LYDIVRKL +GAQ+      + G  + ++ G S F LQS P+ +FP 
Sbjct: 61  VAQPGATTASAHTLYDIVRKLPEGAQVELSTGADEG-RLQLTAGRSRFALQSLPQEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                  + FEL +  ++ L+++T FA++ EE RYYLNGI+FH     +   L AVATDG
Sbjct: 120 MAAGSLPHRFELPAEAMRRLIDKTRFAISMEETRYYLNGIYFHAVDGPKQKSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    A MP +IVPRK V E+ ++L     ++ V +SE++I      + ++
Sbjct: 180 HRLAQVDHDLPEGAAGMPGVIVPRKTVLELQKLLEGNSGALSVGVSETKIRFEFGGIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L+V+     +AVDRVS +S+ + +AVKL++   KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPVGNDKMLQVDGKRFAEAVDRVSTISTEKSRAVKLNIEEGKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E ++V Y+   ++I FN +YLL+I   +        E  F    S S   
Sbjct: 300 VTNPDSGSATEELSVSYSSPAIEIGFNARYLLDITGQLDG-----AEASFAFADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    DS+++      A YVLMPMR+
Sbjct: 355 VR----DSEDSM-----AVYVLMPMRV 372


>gi|300021541|ref|YP_003754152.1| DNA polymerase III subunit beta [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523362|gb|ADJ21831.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 372

 Score =  299 bits (765), Expect = 6e-79,   Method: Compositional matrix adjust.
 Identities = 157/388 (40%), Positives = 237/388 (61%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ER ++L+ L H   ++ER+ TIP+  +++L+A+   L  KA+  E E++ ++ A 
Sbjct: 1   MRLEIERGELLKALSHVTSVVERRTTIPILSNIMLKASGETLMFKATDLEREVSESVGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++TV AH+L+DIVRKL DGA+I   ++ E    + I+ G S F LQ+    +FP 
Sbjct: 61  VSTPGTLTVPAHVLHDIVRKLPDGAEIEMKRDGE-KERLTITSGHSRFSLQTLSAEDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  + F + +  LK L+++T FA++TEE RYYLNGIF H  E      L AVATDG
Sbjct: 120 LAVGEIGHEFTIEAGDLKRLIDKTRFAISTEETRYYLNGIFLHPAETAGVKTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+ +      MP +IVPRK V E+ R+L    + V V +S++++   I  + ++
Sbjct: 180 HRLAQVELPLPKGAEGMPGVIVPRKTVHELARLLEDSSAKVNVGVSQTKVRFEIGPVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKE++V   + + AVDRVS ++S R +AVKL+++ DKL +T
Sbjct: 240 SKLIDGTFPDYSRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVAKDKLILT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NP+ G A E + V Y+  P++I FN +YLL+I D + S     ++  F L    S   
Sbjct: 300 VNNPEGGSATEEIPVGYSAGPLEIGFNARYLLDIADQLES-----EDARFLLADPGSPTM 354

Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R G D           NA YVLMPMR+
Sbjct: 355 VRDGGDG----------NALYVLMPMRV 372


>gi|148555705|ref|YP_001263287.1| DNA polymerase III subunit beta [Sphingomonas wittichii RW1]
 gi|148500895|gb|ABQ69149.1| DNA polymerase III, beta subunit [Sphingomonas wittichii RW1]
          Length = 370

 Score =  298 bits (763), Expect = 9e-79,   Method: Compositional matrix adjust.
 Identities = 155/387 (40%), Positives = 238/387 (61%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ LGH   ++ER+NTIP+  +VL++A  +G L + A+  +++I  A+PA
Sbjct: 1   MKATIERATLLKSLGHVQSVVERRNTIPILSNVLIEATAEGTLRLMATDLDLQIVEAVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +VD  G+ TVSAH L+DI RKL +G+Q+          ++ +  G + F LQ+ P+ +FP
Sbjct: 61  AVDQPGATTVSAHTLFDIARKLPEGSQVQLSAAE---GKMQVVAGRARFNLQTLPKDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178
              E E    FEL +  LK L+++T FA++TEE RYYLNGIFFH+ +E    L A ATDG
Sbjct: 118 MIAEGELPTRFELPAETLKQLIDKTRFAISTEETRYYLNGIFFHVQDEGSPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   +        MP II+PRK VGE+ ++L   D SV ++LS ++I   + +  ++
Sbjct: 178 HRLARVTIARPDGAEGMPDIIIPRKCVGELRKLLDEVDGSVDITLSSTKIRFGLGTAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDK L+++  +  + VDRV+ ++S + +AVK++L  DK+ ++
Sbjct: 238 SKLIDGTFPDYNRVIPTANDKLLKIDPKSFMEGVDRVATIASEKTRAVKMALDRDKITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   Y     +I FN +YLL+I+  I  D V   EV   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGDYAATGFEIGFNARYLLDILGQIDGDTV---EV--HLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +++K  A YVLMPMR+
Sbjct: 353 IR---------ENDKAPALYVLMPMRV 370


>gi|84684520|ref|ZP_01012421.1| DNA polymerase III subunit beta [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667499|gb|EAQ13968.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
           HTCC2654]
          Length = 372

 Score =  298 bits (762), Expect = 1e-78,   Method: Compositional matrix adjust.
 Identities = 152/387 (39%), Positives = 237/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+VER+ +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISVERAVLLKAVGQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA +    +   G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGAMVQLTDDGAAG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ +    L  VATDG
Sbjct: 120 MASSEYSANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDAEGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPKGAEDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N K++ V+     +AVDRV+ +SS R +AVKL+L+ DKL ++
Sbjct: 240 SKVIDGTFPDYTRVIPMGNTKKMEVDAAEFAKAVDRVATVSSERSRAVKLALAEDKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  M+I FN KYLLEI     + +V  +  VF  D++   V 
Sbjct: 300 VNAPDAGAAEEELIVAYGDEGMEIGFNAKYLLEI-----ASQVDRENAVFMFDNAGQPVL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|319406518|emb|CBI80160.1| DNA polymerase III, beta chain [Bartonella sp. 1-1C]
          Length = 373

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 159/387 (41%), Positives = 246/387 (63%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ RS +L+ L    RI+ER++ IP+  +VL+  +DG +++KA+  ++EI  +   +
Sbjct: 1   MRITIGRSQLLKSLSRVHRIVERRSAIPILSNVLIDTSDGRMQLKATDLDLEIIESSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D + +      +  + ++I+ G +NF LQ  P+ +FP 
Sbjct: 61  IEQGGAITVPAHLLYDIVRKLPDDSNVILEVNEDQASAMSITSGCTNFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FH+ ++D LKL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIDDDILKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  + +  MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ ++
Sbjct: 181 RLAQVDIEAPSGVDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  +   AVDRVS +SS R +AVKL++    + + 
Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLIVNRQDFSAAVDRVSTISSDRGRAVKLTIEKGVVKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   +SS     DE++F    S +   
Sbjct: 301 VNNPDSGSAKDQLVANYVFDPLEIGFNSRYLLDIAAQLSS-----DEMIFMFADSGAPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IRG D           NA YVLMP+R+
Sbjct: 356 IRGNDDK---------NALYVLMPIRV 373


>gi|254461783|ref|ZP_05075199.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206678372|gb|EDZ42859.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 372

 Score =  296 bits (759), Expect = 3e-78,   Method: Compositional matrix adjust.
 Identities = 153/387 (39%), Positives = 240/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ + HA  ++ER+NTIP+  +VL++A    +  +A+  +IE+   + A 
Sbjct: 1   MKISIERATLLKAVSHAQSVVERRNTIPILANVLIEAEGNDVRFRATDLDIEVVDKVEAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L +IVRKL DGAQ++   +   G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSATTLNEIVRKLPDGAQVTLTDDGTSG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   +SVL+ L +++ FA++TEE RYYLNG++ HI++ +    L  VATDG
Sbjct: 120 MATSEYSANFSAQASVLRRLFDKSKFAISTEETRYYLNGVYMHISDAEGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    ++MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPENASEMPGVIVPRKTVGELRKLLDEDDMQIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|126724506|ref|ZP_01740349.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
           HTCC2150]
 gi|126705670|gb|EBA04760.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
           HTCC2150]
          Length = 372

 Score =  294 bits (752), Expect = 2e-77,   Method: Compositional matrix adjust.
 Identities = 153/387 (39%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +G A  ++ER+NTIP+  +VL++A+   +  +A+  +IE+     A 
Sbjct: 1   MKISIERATLLKAVGQAQSVVERRNTIPILANVLIEADANSVSFRATDLDIEVVDKTVAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+ TVSA  L++IVRKL DGA +    +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VDRPGATTVSAVTLHEIVRKLPDGALVQLTDDGSSG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F + S VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MANAEYGANFSIESKVLRRLFDKSKFAISTEETRYYLNGVYMHVSDADGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+ A    MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPAGAETMPGVIVPRKTVGELRKLLDDDDVKIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDDRLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N   A YV+MPMR+
Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372


>gi|149202936|ref|ZP_01879907.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035]
 gi|149143482|gb|EDM31518.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035]
          Length = 372

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DG+ ++   +   G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGASG-RLTVQAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    + MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + + V+     QAVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N   A YV+MPMR+
Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372


>gi|85705684|ref|ZP_01036781.1| DNA polymerase III subunit beta [Roseovarius sp. 217]
 gi|85669674|gb|EAQ24538.1| DNA polymerase III subunit beta [Roseovarius sp. 217]
          Length = 372

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DG+ ++   +   G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGTSG-RLTVQAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    + MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + + V+     QAVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N   A YV+MPMR+
Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372


>gi|114762141|ref|ZP_01441609.1| DNA polymerase III subunit beta [Pelagibaca bermudensis HTCC2601]
 gi|114545165|gb|EAU48168.1| DNA polymerase III subunit beta [Roseovarius sp. HTCC2601]
          Length = 372

 Score =  292 bits (748), Expect = 5e-77,   Method: Compositional matrix adjust.
 Identities = 150/388 (38%), Positives = 234/388 (60%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGDTVTFRATDLDIEVLDRAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA +    ++  G  + ++ G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGALVQLADDSAAG-RLTVTAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   +  L+ L +++ FA++TEE RYYLNG++ H++  EE   L  VATDG
Sbjct: 120 MASSEYATNFSAKAETLRKLFDKSKFAISTEETRYYLNGVYMHVSDSEEGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAPVPEGAEAMPGVIVPRKTVGELRKLLDDDDMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+ T   +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDATEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y + P++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDEPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R G D           +A YV+MPMR+
Sbjct: 355 MREGSD----------TSAVYVVMPMRV 372


>gi|260428831|ref|ZP_05782808.1| DNA polymerase III, beta subunit [Citreicella sp. SE45]
 gi|260419454|gb|EEX12707.1| DNA polymerase III, beta subunit [Citreicella sp. SE45]
          Length = 372

 Score =  292 bits (747), Expect = 8e-77,   Method: Compositional matrix adjust.
 Identities = 150/388 (38%), Positives = 236/388 (60%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGNTVTFRATDLDIEVLDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA +   ++   G  + ++ G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGALVQLSEDGGAG-RLTVTAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ HI  +EE   L  VATDG
Sbjct: 120 MASSEYATNFTAKAEVLRKLFDKSKFAISTEETRYYLNGVYMHIADSEEGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  + +    MP +IVPRK VGE+ ++L   +  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAPLPSGAEAMPGVIVPRKTVGELRKLLDEDEMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y + P++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDDPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R G D           +A YV+MPMR+
Sbjct: 355 MREGSD----------TSAVYVVMPMRV 372


>gi|83944867|ref|ZP_00957233.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633]
 gi|83851649|gb|EAP89504.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633]
          Length = 372

 Score =  291 bits (745), Expect = 1e-76,   Method: Compositional matrix adjust.
 Identities = 159/391 (40%), Positives = 235/391 (60%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  +VL+ A+DG     A+  ++EI     AS
Sbjct: 1   MKLTIERAILLKALGHVQAVVERRNTIPILSNVLINASDGFARFTATDLDMEIVEEAEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           V+  G IT  AH LY+I RKL +G+Q++     ELG +   + +S G S F L   P  +
Sbjct: 61  VEREGLITAPAHTLYEIARKLPEGSQVTL----ELGGDDPRILLSAGRSRFNLPILPPGD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVA 175
           FP    E+   SF   +S +  L+++T FA++TEE RYYLNGI  H  E D +  L AVA
Sbjct: 117 FPVMPSEDLAVSFTAPASEIARLIDKTKFAISTEETRYYLNGIHLHAAERDGRKTLRAVA 176

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+AE D+      MP++IVPRK + E+ R+L   D  V VS+SE +I   + + 
Sbjct: 177 TDGHRLALAETDLPDGAMGMPAVIVPRKPIQELRRLLEDLDGDVDVSVSEGKIRFQLGAA 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            ++ +LIDG FP+Y+ VIP  NDK +R++     QAVDRV+ +S  + ++VKLSL+  ++
Sbjct: 237 VLTSKLIDGTFPDYERVIPRGNDKVMRIDRAPFAQAVDRVATISQEKSRSVKLSLAPGQV 296

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSN 354
            +TV+NP+ G A E +   Y+   M I FN +YLL++   I       DE +F L DS +
Sbjct: 297 TLTVNNPESGAASEELVADYSADEMTIGFNARYLLDVASQIEG-----DEAIFELADSGS 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +      DKD++          YVLMP+R+
Sbjct: 352 PTRVTDSGDKDAE----------YVLMPLRV 372


>gi|110677617|ref|YP_680624.1| DNA polymerase III subunit beta [Roseobacter denitrificans OCh 114]
 gi|109453733|gb|ABG29938.1| DNA polymerase III, beta subunit [Roseobacter denitrificans OCh
           114]
          Length = 372

 Score =  291 bits (744), Expect = 2e-76,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 240/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVTFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA ++   ++ +G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSATTLHEIVRKLPDGALVTLTADSAIG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F + + VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MATSEYQSNFSVKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADADGGHVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L + + ++ VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPEAANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372


>gi|294085124|ref|YP_003551884.1| DNA polymerase III subunit beta [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664699|gb|ADE39800.1| DNA polymerase III, beta subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 367

 Score =  289 bits (740), Expect = 4e-76,   Method: Compositional matrix adjust.
 Identities = 152/386 (39%), Positives = 237/386 (61%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R  +L  LGH   ++ER+NTIP+  +V+L+A DG L + A+  +++IT  +  +
Sbjct: 1   MKLAIDRMSLLRPLGHVQSVVERRNTIPILANVVLRAEDGQLSLTATDMDMDITTEVGCA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119
           V   G+ T+SAH+LYDIVRKL DG+++    E  +G     IS G S+F L + P  +FP
Sbjct: 61  VATAGTTTMSAHMLYDIVRKLPDGSEV----ELSVGDGHAMISAGRSSFRLPTLPVEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E   +F L ++  ++L++ T FA++TEE RYYLNGI+ H ++    LCAVATDGH
Sbjct: 117 AISSNELPTNFVLTAADFRDLIDATKFAISTEETRYYLNGIYLHKSDAG-DLCAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ +  +    A+MPSII+PRKAVGE+ ++L   D  V +S+SE+R      ++ ++ 
Sbjct: 176 RLAMTKQTLPGGAAQMPSIILPRKAVGELRKLLDDYDGDVTISMSETRAEFAFGAVRLTT 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP +NDK ++V+      AVDRVS +SS + ++VK+ L +  + ++ 
Sbjct: 236 KLIDGTFPDYTRVIPTNNDKIMQVDVGAFSAAVDRVSTISSEKSKSVKIGLRAGVMTLSA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D   A E + V Y+   M+I FN +YLL+I   ++S E+V+    F L    S   +
Sbjct: 296 SNTDASSATEELEVSYSGNEMEIGFNARYLLDIASQVNS-EMVE----FALADQGSPTLV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R    D+         + +VLMPMR+
Sbjct: 351 RTPGDDA---------SLFVLMPMRV 367


>gi|260574426|ref|ZP_05842430.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2]
 gi|259023322|gb|EEW26614.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2]
          Length = 372

 Score =  289 bits (739), Expect = 6e-76,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ L  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKALSQAQSVVERRNTIPILANVLIEAEGANVSFRATDLDIEVVDRAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL +GA +S  ++   G  + I+ G S F L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPEGALVSLAEDGAAG-RLTITAGRSTFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + +L+ L ++  FA++TEE RYYLNG++ H++  E    L AVATDG
Sbjct: 120 MANAEYASNFSAPAPLLRRLFDKAKFAISTEETRYYLNGVYLHVSTGESGPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK V E+ ++L   ++ + VS+SE+++      L+++
Sbjct: 180 HRLARIDAPLPEGAAGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPVLTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|56695075|ref|YP_165422.1| DNA polymerase III subunit beta [Ruegeria pomeroyi DSS-3]
 gi|56676812|gb|AAV93478.1| DNA polymerase III, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 372

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A     + +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGEGAQFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ TVSA  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  IERAGATTVSATTLHEIVRKLPDGALVTLTADAAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MASSEYQSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+ A    MP +IVPRK VGE+ ++L   +  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPAGATDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+ +   +AVDRV+ +SS R +AVKL L  DKL ++
Sbjct: 240 SKVIDGTFPDYTRVIPQANTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y++  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDQSAVYVVMPMRV 372


>gi|332187226|ref|ZP_08388965.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
 gi|332012647|gb|EGI54713.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
          Length = 380

 Score =  288 bits (738), Expect = 7e-76,   Method: Compositional matrix adjust.
 Identities = 156/388 (40%), Positives = 234/388 (60%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VLL+A  +G L + A+  +++I  ++ A
Sbjct: 10  MKATIERATLLKGLSHVQSVVERRNTIPILSNVLLEATAEGQLRMMATDLDLQINDSVAA 69

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +VD  GS TVSAH L+DI RKL +GAQ+           + I  G + F L + P  +FP
Sbjct: 70  AVDQPGSTTVSAHTLFDIARKLPEGAQVQLTAAE---GRMTIVAGRARFSLGTLPRDDFP 126

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
              E E    FEL   +LK ++++T FA++TEE RYYLNGIF H+ E++    L A ATD
Sbjct: 127 VIAEGELPTQFELPVELLKQIIDKTRFAISTEETRYYLNGIFLHVAEDNGAPVLKAAATD 186

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA   ++       MP +IVPRK V E+ ++L   D SV VSLS ++I  ++    +
Sbjct: 187 GHRLARVTIERPNGAEGMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGTKIRFDLGQAIL 246

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP +NDK L+++     Q VDRVS +++ + +AVK++L  D++ +
Sbjct: 247 TSKLIDGTFPDYSRVIPTANDKILKLDPKAFMQGVDRVSTIATEKTRAVKMALDRDRITL 306

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V +P+ G A E +   Y   P +I FN +YLL+I+  I SD V   EV   L  + +  
Sbjct: 307 SVTSPENGTASEEVPGEYTSLPFEIGFNSRYLLDILGQIDSDLV---EV--HLADAAAPT 361

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IR         +++K  A YVLMPMR+
Sbjct: 362 LIR---------ENDKAPALYVLMPMRV 380


>gi|84501259|ref|ZP_00999464.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597]
 gi|84390550|gb|EAQ03038.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597]
          Length = 372

 Score =  288 bits (738), Expect = 9e-76,   Method: Compositional matrix adjust.
 Identities = 150/388 (38%), Positives = 241/388 (62%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGNEVQFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGAQ++  ++   G  + ++ G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGAQVTLSEDGAAG-RLTVAAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLK-LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ E ED + L  VATDG
Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRMLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK VGE+ ++L   +  V VS+SE+++      ++++
Sbjct: 180 HRLARIDATLPEGAADMPGVIVPRKTVGELRKLLDDDELQVAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+ ++  +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFAKAVDRVATVSSERSRAVKLALDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +S+     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAGDPTL 354

Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R G D           +A YV+MPMR+
Sbjct: 355 MREGSD----------TSAVYVVMPMRV 372


>gi|83950589|ref|ZP_00959322.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM]
 gi|83838488|gb|EAP77784.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM]
          Length = 372

 Score =  288 bits (737), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKFSIERGILLKAVSQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS TVSA  L++IVRKL DGA ++   +   G  + +  G S+F L + P+ +FP 
Sbjct: 61  VERAGSTTVSAVTLHEIVRKLPDGALVTLTDDGAAG-RLAVEAGRSSFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYASNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDGDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   D+ + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPDGAGDMPGVIVPRKTVGELRKLLDDDDAVIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|319403602|emb|CBI77187.1| DNA polymerase III, beta chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 373

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 160/388 (41%), Positives = 244/388 (62%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ RS +L+ L    RI+ER+NTIP+  +VL+  +DG +++KA+  ++EI      +
Sbjct: 1   MRVTIGRSQLLKSLSRVHRIVERRNTIPILSNVLIDTSDGRMQLKATDLDLEIIETSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  G+ITV AHLLYDIVRKL D + +     EN+  T ++I+ G +NF LQ  P+ +FP
Sbjct: 61  LEQAGAITVPAHLLYDIVRKLPDDSDVILDVNENQAST-MSITSGCTNFQLQCLPKVDFP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDG 178
            +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FH+  +D LKL  V+TDG
Sbjct: 120 ESLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIYDDILKLRLVSTDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237
           HRLA  +++  +    MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ +
Sbjct: 180 HRLAQVDIEAPSGADGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVIL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP YQ VIP  NDK+L +N  +   AVDRVS +SS R +AVKL +    + +
Sbjct: 240 TSKLIDGVFPEYQRVIPLGNDKKLIINRQDFSAAVDRVSTISSDRGRAVKLMIEKGIVKL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V+NPD G A + +   Y   P++I FN +YLL+I   +SS     DE++     S +  
Sbjct: 300 VVNNPDSGSAKDQLVADYVFDPLEIGFNSRYLLDIAAQLSS-----DEMICMFADSAAPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IRG         +   NA YVLMP+R+
Sbjct: 355 LIRG---------NGDTNALYVLMPVRV 373


>gi|294010896|ref|YP_003544356.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S]
 gi|292674226|dbj|BAI95744.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S]
          Length = 370

 Score =  288 bits (736), Expect = 1e-75,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A+ DG +++ A+  +++I  ++ A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQIVESVSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ T+SAH L+DI RKL +G+Q+S         ++ I  G + F L + P  +FP
Sbjct: 61  QVEQPGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178
              E +   SFEL +  LK ++++T FA++TEE RYYLNGI+FH++++    L A ATDG
Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   V        MP IIVPRK +GE+ ++L   D SV++SLS S+I   + S  ++
Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVDGSVQISLSASKIRFGLGSAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDK L+++  +  + VDRV+ +++ + +AVK++L  DK+ ++
Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   +     DI FN +YLL+I+  I S     D V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDS-----DLVELHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +D++  A YVLMPMR+
Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370


>gi|221640842|ref|YP_002527104.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides KD131]
 gi|221161623|gb|ACM02603.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides KD131]
          Length = 372

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGALVGL-SEDPASGRLTVTAGRSVFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F+  + VL+ L ++  FA++TEE RYYLNG+F H+   EE   L  VATDG
Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   +  + VS+SE+++      ++M+
Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|83309736|ref|YP_420000.1| DNA polymerase III subunit beta [Magnetospirillum magneticum AMB-1]
 gi|82944577|dbj|BAE49441.1| DNA polymerase sliding clamp subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 379

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 226/387 (58%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ L H   ++ER+ TIP+  +V L+   GLL + A+  +++I  A+PA 
Sbjct: 8   MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 67

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T  AH  Y+IVRKL DG+Q+    + E G ++ +  G S F L   P  +FP 
Sbjct: 68  VVRPGATTAPAHTFYEIVRKLPDGSQVEIEHDAESG-QLTLRSGRSKFSLACLPVEDFPV 126

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E  ++F L+++ LK L++RT FA++TEE RYYLNGI+ H    D    L AVATDG
Sbjct: 127 LSGGELPFTFSLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGVDVLRAVATDG 186

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+ + +  A MP IIVPRK V EI +++   D  + VSLSE+++        ++
Sbjct: 187 HRLARVEITLPSGAAGMPGIIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 246

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK L V+C +  QAVDRVS +S+ + +A+KL+L      ++
Sbjct: 247 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 306

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + + G A+E +   Y   P++I FN +YL++I+  +       D   F +  + S   
Sbjct: 307 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----DTARFAMADAASPTV 361

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         +     A YVLMPMR+
Sbjct: 362 VR---------EMTDGGAIYVLMPMRV 379


>gi|163745036|ref|ZP_02152396.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45]
 gi|161381854|gb|EDQ06263.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45]
          Length = 372

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+   + A 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKVAAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA LL++IVRKL DGA I+   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVSATLLHEIVRKLPDGALINLTADTAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ HI   E    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHIADAESGKALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + ++    A+MP +IVPRK VGE+ ++L   +  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAEMPEGAAEMPGVIVPRKTVGELRKLLDDDEMEIAVSVSETKIRFATPGITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|307295044|ref|ZP_07574886.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1]
 gi|306879518|gb|EFN10736.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1]
          Length = 370

 Score =  287 bits (735), Expect = 2e-75,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A+ DG +++ A+  +++I  ++ A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASSDGAIKLMATDLDLQIVESVSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ T+SAH L+DI RKL +G+Q+S         ++ I  G + F L + P  +FP
Sbjct: 61  QVEQAGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178
              E +   SFEL +  LK ++++T FA++TEE RYYLNGI+FH++++    L A ATDG
Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   V        MP IIVPRK +GE+ ++L   + SV++SLS S+I   + S  ++
Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDK L+++  +  + VDRV+ +++ + +AVK++L  DK+ ++
Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   +     DI FN +YLL+I+  I S     D V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDS-----DLVELHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +D++  A YVLMPMR+
Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370


>gi|163733263|ref|ZP_02140707.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149]
 gi|161393798|gb|EDQ18123.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149]
          Length = 372

 Score =  287 bits (734), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 147/387 (37%), Positives = 238/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSATTLHEIVRKLPDGALVTLTADSATG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ + +    L  VATDG
Sbjct: 120 MATSEYQSNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADAEGGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L + + ++ VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPEDANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372


>gi|255261800|ref|ZP_05341142.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62]
 gi|255104135|gb|EET46809.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62]
          Length = 372

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ERS +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+    PA 
Sbjct: 1   MKISIERSILLKAVAQAQSVVERRNTIPILANVLIEAEGDSATFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L +IVRKL DGA ++   ++  G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVAAVTLNEIVRKLPDGALVTLTDDSATG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADSDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    + M  +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPDGASDMAGVIVPRKTVGELRKLLDDDDVQIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V YN+  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEEIAVAYNDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|103486201|ref|YP_615762.1| DNA polymerase III subunit beta [Sphingopyxis alaskensis RB2256]
 gi|98976278|gb|ABF52429.1| DNA polymerase III, beta subunit [Sphingopyxis alaskensis RB2256]
          Length = 371

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/388 (39%), Positives = 234/388 (60%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ LGH   ++ER+NTIP+  +VL++A+  G L + A+  ++++   I A
Sbjct: 1   MKATIERAVLLKSLGHVQSVVERRNTIPILSNVLIEADGTGQLRLMATDLDLQVVETIAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ TVSAH L++I RKL +G+++S         +V +  G SNF L + P  +FP
Sbjct: 61  KVETPGTTTVSAHTLFEIARKLPEGSEVSLAAAE---GKVQVKAGRSNFNLPTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
              E +   +FEL  + L  ++++T FA++TEE RYYLNGIF H+ E+     L A ATD
Sbjct: 118 VIAEGDLPTNFELPVAELIQIIDKTRFAISTEETRYYLNGIFLHVAEDATGPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA   V      A MP +IVPRK VGEI ++L   + +V++SLS S+I   + +  +
Sbjct: 178 GHRLARYTVTRPDGAAGMPDVIVPRKCVGEIRKLLDEAEGNVEISLSASKIRFQLGNAVL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP +NDK L+V+  +L Q VDRVS ++S + +AVK+ L  D++ +
Sbjct: 238 TSKLIDGTFPDYSRVIPTANDKLLKVDPKSLFQGVDRVSTIASEKTRAVKVGLDKDRITL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V +P+ G A E +   Y+   M+I FN +YL +I+  +       D V   L  +N+  
Sbjct: 298 SVTSPENGTAAEELAAAYDSDAMEIGFNARYLSDILGQVDG-----DSVELHLADANAPT 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IR  +K           A YVLMPMR+
Sbjct: 353 LIRESEKSP---------ALYVLMPMRV 371


>gi|89069838|ref|ZP_01157173.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516]
 gi|89044639|gb|EAR50755.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516]
          Length = 372

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 153/387 (39%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKFSIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGDGVQFRATDLDIEVVDRAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L +IVRKL DGA ++  ++   G  + I  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAAVTLNEIVRKLPDGALVTLAEDGGSG-RLQIMAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLK-LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ E ED + L  VATDG
Sbjct: 120 MASSEYATNFTADAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +     +MP +IVPRK VGE+ ++L   +  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAALPEGAEEMPGVIVPRKTVGELRKLLDDDEMQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N K L V+ +   +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPANNAKRLEVDASEFAKAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  +DI FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGNAEEELAVAYGDEKLDIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  D  S         A YV+MPMR+
Sbjct: 355 MREGDDTS---------AVYVVMPMRV 372


>gi|84514653|ref|ZP_01002017.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53]
 gi|84511704|gb|EAQ08157.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53]
          Length = 372

 Score =  286 bits (733), Expect = 3e-75,   Method: Compositional matrix adjust.
 Identities = 151/387 (39%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IEI    PA 
Sbjct: 1   MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAQGDEVHFRATDLDIEIVDKAPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+ TVSA  L +IVRKL DGA ++  +E+  G  + I  G SNF L + P+ +FP 
Sbjct: 61  VDRAGATTVSAVTLNEIVRKLPDGALVTLTEESATG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               +Y  +F   + VL+ L +++ FA++TEE RYYLNG++ H+   E    L  VATDG
Sbjct: 120 MASSDYAANFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + ++      M  +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAELPMGAENMAGVIVPRKTVGELRKLLDDDDMKIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDASEFARAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A E + V Y++  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNSPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAIYVVMPMRV 372


>gi|83591342|ref|YP_425094.1| DNA polymerase III subunit beta [Rhodospirillum rubrum ATCC 11170]
 gi|83574256|gb|ABC20807.1| DNA polymerase III, beta subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 372

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 231/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  +V ++  +    + A+  ++EI   + A+
Sbjct: 1   MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ T  AH LYDIVRKL DG+Q+    +   G ++ +  G S F L   P  +FP+
Sbjct: 61  TLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDG-QLVLKAGRSRFSLSCLPVEDFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E+ +SF L ++ L+ L++RT FA++TEE RYYLNGI+ H  E      L AVATDG
Sbjct: 120 LSAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+ + A  A MP +IVPRK VGE+ +++      + V LSE +I  + +   ++
Sbjct: 180 HRLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK L V+C    QA DRVS +S+ + +A+K++++   + ++
Sbjct: 240 SKLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G A+E +   Y    ++I FN +YLL+I+  +    V    + F  D+++ +V 
Sbjct: 300 ASSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEGGSV---RLTF-ADAASPTVI 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +D  +      +A YVLMPMR+
Sbjct: 356 -----RDVAD-----ASAVYVLMPMRV 372


>gi|126460790|ref|YP_001041904.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559820|ref|ZP_08414142.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N]
 gi|126102454|gb|ABN75132.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|332277532|gb|EGJ22847.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N]
          Length = 372

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P  +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGALVGL-SEDPASGRLTVTAGRSVFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F+  + VL+ L ++  FA++TEE RYYLNG++ H+   EE   L  VATDG
Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGPVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   +  + VS+SE+++      ++M+
Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|77464921|ref|YP_354425.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides 2.4.1]
 gi|77389339|gb|ABA80524.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides 2.4.1]
          Length = 372

 Score =  286 bits (731), Expect = 5e-75,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P  +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGALVGL-SEDPASGRLTVTAGRSVFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F+  + VL+ L ++  FA++TEE RYYLNG++ H+   EE   L  VATDG
Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGSVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   +  + VS+SE+++      ++M+
Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|149912811|ref|ZP_01901345.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b]
 gi|149813217|gb|EDM73043.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b]
          Length = 372

 Score =  285 bits (730), Expect = 6e-75,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKLSIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A +L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVNAVMLHEIVRKLPDGALVTLTDDSATG-RLTVEAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL  L +++ FA++TEE RYYLNG++ H+ + +    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLLRLFDKSKFAISTEETRYYLNGVYMHVADAEGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPIGAEDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+     +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAAEFAKAVDRVATVSSERSRAVKLTLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|146276061|ref|YP_001166220.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554302|gb|ABP68915.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 372

 Score =  285 bits (728), Expect = 1e-74,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 231/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P  +FP 
Sbjct: 61  VERPGATTVSAVMLHEIVRKLPDGALVGL-SEDAASGRLTVTAGRSVFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   + VL+ L ++  FA++TEE RYYLNG+F H+   EE   L  VATDG
Sbjct: 120 MASSEYSSNFTAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      M  +IVPRK V E+ ++L   ++ +KVS+SE+++      ++M+
Sbjct: 180 HRLARIDAPLPEGAEGMAGVIVPRKTVNELRKLLDDDEAQIKVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTGNARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|209966326|ref|YP_002299241.1| DNA polymerase III subunit beta [Rhodospirillum centenum SW]
 gi|209959792|gb|ACJ00429.1| DNA polymerase III, beta subunit [Rhodospirillum centenum SW]
          Length = 374

 Score =  284 bits (727), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/391 (38%), Positives = 232/391 (59%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ER+ +L  LGH   ++ER+NTIP+  +V+L+A +G L + A+  ++EI  ++PA 
Sbjct: 1   MKITIERAALLRSLGHVQSVVERRNTIPILSNVMLRAENGELSLTATDMDLEIVESVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS T  AH LYDI RKL DG+Q+     +  G  + +  G S F L + P  ++P+
Sbjct: 61  IARPGSATAPAHTLYDIARKLPDGSQVEL---DSTGDMLTLRSGRSQFKLGTLPVDDYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE------EDLKLCAV 174
               +  + F L+++ LK L++RT FA++TEE RYYLNGIF H +       E   L AV
Sbjct: 118 MSGGDMGHRFSLSAADLKALIDRTRFAISTEETRYYLNGIFLHASTARGAGGETPVLRAV 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRLA  E+ +    A +P +I+PRKAV E+ ++L      ++V LS++++    ++
Sbjct: 178 ATDGHRLARVEMPLPEGAAGIPGVIIPRKAVLEVRKLLDEAADRIEVQLSDTKVRFAFDA 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           ++++ +LIDG FP+Y+ VIP  NDK L V+      AVDRV+ +S+ + +AVKLSL    
Sbjct: 238 ITLTSKLIDGTFPDYERVIPTGNDKVLEVDPRLFAGAVDRVATISTEKSRAVKLSLDRGV 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  +P+ G A E + V Y+   ++I FN +YLL+I   I       +   F +  + 
Sbjct: 298 LTLSASSPEAGSATEELEVVYDAPALEIGFNSRYLLDITQQIEG-----EGARFTMADAG 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   +R    D  +      +A YVLMPMR+
Sbjct: 353 SPTLVR----DVAD-----ASALYVLMPMRV 374


>gi|126734081|ref|ZP_01749828.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2]
 gi|126716947|gb|EBA13811.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2]
          Length = 372

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+     A 
Sbjct: 1   MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDRASAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L +IVRKL DGA ++  ++   G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVAAVTLNEIVRKLPDGALVTLTEDGASG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDSDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    A M  +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDGAADMAGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+ +   +AVDRV+ +SS R +AVKL+L  DKL ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  ++S     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNTSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|83855143|ref|ZP_00948673.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1]
 gi|83941666|ref|ZP_00954128.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36]
 gi|83842986|gb|EAP82153.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1]
 gi|83847486|gb|EAP85361.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36]
          Length = 372

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 236/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+     A 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAAAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA IS   ++  G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVSATTLHEIVRKLPDGALISLTADSAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F+  + VL+ L +++ FA++TEE RYYLNG++ HI++ +    L  VATDG
Sbjct: 120 MATSEYQSNFKAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISDSEGSKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A+MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAPMPEGAAEMPGVIVPRKTVGELRKLLDDDDMEIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+ ++  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|159045914|ref|YP_001534708.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12]
 gi|157913674|gb|ABV95107.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12]
          Length = 372

 Score =  284 bits (726), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 149/388 (38%), Positives = 234/388 (60%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L  +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+   + A 
Sbjct: 1   MKISIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV A  L++IVRKL DGA ++   +   G  + +S G SNF L + P  +FP 
Sbjct: 61  VERAGATTVPAVTLHEIVRKLPDGALVALTHDTAKG-RLEVSAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+   E    L  VATDG
Sbjct: 120 MTTTEYTCNFAAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGRSLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   ++ + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDAAEGMPGVIVPRKTVGELRKLLEDDEAQIAVSVSETKIRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP SN ++L V+ +   +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPVSNSRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +S+     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAADPTM 354

Query: 359 IR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R G D           +A YV+MPMR+
Sbjct: 355 MREGSDS----------SAIYVVMPMRV 372


>gi|254486821|ref|ZP_05100026.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101]
 gi|214043690|gb|EEB84328.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101]
          Length = 372

 Score =  283 bits (725), Expect = 2e-74,   Method: Compositional matrix adjust.
 Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+    PA 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ TVSA  L++IVRKL DGA I+   ++  G  + +  G SNF L + P  +FP 
Sbjct: 61  IERAGATTVSATTLHEIVRKLPDGALITLTSDSAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ HI+E +    L  VATDG
Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISESEGNKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAPMPEGADDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+ ++  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|304319870|ref|YP_003853513.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503]
 gi|303298773|gb|ADM08372.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503]
          Length = 373

 Score =  283 bits (725), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 231/388 (59%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ER+ +L+ L H   ++ER+NTIP+  +VL++A  G L + A+  +IEI   +PA 
Sbjct: 1   MQVTIERATLLKALHHTQSVVERRNTIPILSNVLMRAQGGSLALTATDLDIEIAETVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G +T SA  LYDIV++L DG QIS  K +   + + +  G S F L   P+ +FP+
Sbjct: 61  IAEEGGVTASAVTLYDIVKRLPDGGQISLNKSSG-SSRLMLKSGRSEFQLSILPDDDFPT 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
             +E    +F +++  L  L++RT FAM+ EE RYYLNG++ H     E    L AVATD
Sbjct: 120 LSDEAAGATFTISADALGRLLDRTRFAMSQEETRYYLNGVYLHALTEGEGAPSLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +  +      +P +I+PRKAV E+ R+L   D  V V+++ ++I      + +
Sbjct: 180 GHRLARLDSPLPPGAEAIPGVIIPRKAVLELRRLLDDADGDVAVTVTPAKIRFAFGDIVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  ND+ ++V+    R+AVDRVS +S+ + ++VKLSL+ D+L +
Sbjct: 240 VSKLIDGTFPDYQRVIPSGNDRVMKVDNDAFRRAVDRVSTVSADKTRSVKLSLTEDQLTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V+NP+ G A + ++V +    +++ FN +YLL+I D IS      +  VF    + S  
Sbjct: 300 LVNNPETGSATDELSVDFKSTDLEVGFNARYLLDIADQISG-----ETAVFHFADAASPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  ++ +          A YVLMP+R+
Sbjct: 355 LVTDEEDE---------GALYVLMPLRV 373


>gi|126730157|ref|ZP_01745969.1| DNA polymerase III subunit beta [Sagittula stellata E-37]
 gi|126709537|gb|EBA08591.1| DNA polymerase III subunit beta [Sagittula stellata E-37]
          Length = 372

 Score =  283 bits (724), Expect = 3e-74,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L  +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+     A 
Sbjct: 1   MKISMERATLLRAVAQAQSVVERRNTIPILANVLIEAEGETVTFRATDLDIEVLDKAEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G  TVSA  L++IVRKL DGA +   +E   G  + +S G SNF L + P+ +FP 
Sbjct: 61  VEKPGGTTVSAVTLHEIVRKLPDGALVVLAEEPGTG-RLTVSAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MASSEYGSNFTAKAEVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGQALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAPLPDGAADMPGVIVPRKTVGEMRKLLDEDDMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+ +   +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|254295379|ref|YP_003061402.1| DNA polymerase III subunit beta [Hirschia baltica ATCC 49814]
 gi|254043910|gb|ACT60705.1| DNA polymerase III, beta subunit [Hirschia baltica ATCC 49814]
          Length = 374

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 151/389 (38%), Positives = 235/389 (60%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++R  +++ L H   ++ER+NTIP+  +VL+ A    L + A+  ++E +    A 
Sbjct: 1   MKLTIDRGALMKALSHVQNVVERRNTIPILSNVLIDAEGTSLRLTATDLDMEASDTTIAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS+T  A  L+D+VRKL DG+ I    + E    + I+ G S F L + P  +F +
Sbjct: 61  IEKPGSVTAPAQTLFDVVRKLPDGSDIGLLLDTET-RRLTITSGRSRFALPTLPADDFQT 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
             +EE   SFE+ ++  + L+++T FA++TEE RYYLNG++ H  E    +KL  VATDG
Sbjct: 120 MSKEEAPNSFEIPAADFRRLIDKTKFAISTEETRYYLNGVYMHGTEVGGAVKLRTVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLS 236
           HRLA+AE D       +P II+PRKA+ EI R+L  +++DS V VS SES+I + +    
Sbjct: 180 HRLALAEADAPKGAETLPGIIIPRKAIAEIRRLLDDAAQDSDVSVSTSESKIVVKVGDAV 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +LIDG FP+Y  VIP SN K L +  +  + AVDRV+ +S+ R ++VKL+L +DKL 
Sbjct: 240 ITSKLIDGSFPDYSRVIPQSNSKILVLKNSEFKSAVDRVATVSAERSRSVKLTLENDKLV 299

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           + V N + G+ +E +   Y++ PM+I FN +YLL++   I       DE+ F L+ S SS
Sbjct: 300 LQVSNAETGQGVEELEAQYSDEPMEIGFNARYLLDVTQQIEG-----DEIRFELNDSASS 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +     D  +       A YVLMP+R+
Sbjct: 355 ARV----TDLADQ-----GAQYVLMPLRV 374


>gi|94495788|ref|ZP_01302367.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58]
 gi|94424480|gb|EAT09502.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58]
          Length = 370

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 233/387 (60%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A+ DG +++ A+  ++++  +I A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQVVESISA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ T+SAH L+DI RKL +G+Q+S    +    ++ I  G + F L + P  +FP
Sbjct: 61  QVEQPGATTISAHTLFDIARKLPEGSQVSLQAAD---GKMLIQAGRARFNLSTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATDG 178
              E +    FEL +  LK ++++T FA++TEE RYYLNGI+FH++EE    L A ATDG
Sbjct: 118 VIAEGDLPTQFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSEEGQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   V        MP IIVPRK +GE+ ++L   + SV++SLS S+I   + S  ++
Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L+++  +    VDRV+ +++ + +AVK++L  D++ ++
Sbjct: 238 SKLIDGTFPDYSRVIPTGNDKLLKIDPRSFEDGVDRVATIATEKTRAVKMTLDKDRITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   +     DI FN +YLL+I+  I S     D V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDS-----DLVELHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D            A YVLMPMR+
Sbjct: 353 IRENDASP---------ALYVLMPMRV 370


>gi|23014790|ref|ZP_00054590.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 372

 Score =  283 bits (723), Expect = 4e-74,   Method: Compositional matrix adjust.
 Identities = 147/387 (37%), Positives = 226/387 (58%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ L H   ++ER+ TIP+  +V L+   GLL + A+  +++I  A+PA 
Sbjct: 1   MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T  AH  Y+IVRKL DG+Q+    + E G ++ +  G S F L   P  +FP 
Sbjct: 61  VVRPGATTAPAHTFYEIVRKLPDGSQVEIEFDAESG-QLTLRSGRSKFSLACLPVEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               +  +SF L+++ LK L++RT FA++TEE RYYLNGI+ H    D    L AVATDG
Sbjct: 120 LSGGDLPFSFTLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGIDVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+ + +  A MP +IVPRK V EI +++   D  + VSLSE+++        ++
Sbjct: 180 HRLARVEITLPSGAAGMPGVIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK L V+C +  QAVDRVS +S+ + +A+KL+L      ++
Sbjct: 240 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + + G A+E +   Y   P++I FN +YL++I+  +       +   F +  + S   
Sbjct: 300 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----ETARFAMADAASPTV 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         +     A YVLMPMR+
Sbjct: 355 VR---------EMTDGGAIYVLMPMRV 372


>gi|288959567|ref|YP_003449908.1| DNA polymerase III subunit beta [Azospirillum sp. B510]
 gi|288911875|dbj|BAI73364.1| DNA polymerase III subunit beta [Azospirillum sp. B510]
          Length = 376

 Score =  282 bits (721), Expect = 6e-74,   Method: Compositional matrix adjust.
 Identities = 150/391 (38%), Positives = 229/391 (58%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ER+ +L  LGH   ++ER+NTIP+  +VLL+A DG L + A+  ++EI   +PA+
Sbjct: 1   MNITIERAALLRSLGHVQSVVERRNTIPILSNVLLRAGDGELSLAATDMDLEIVETVPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  T  AH L+DIVRKL DG+Q+      + GT + +  G S F L   P  +FP 
Sbjct: 61  VGRPGGTTAPAHTLFDIVRKLPDGSQVELDIGGD-GTILTLRAGRSQFKLSCLPVEDFPQ 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK------LCAV 174
               +  ++F + ++ L+ L++RT FA++TEE RYYLNGI+ H  +  +       L AV
Sbjct: 120 LSSGDLKHNFSVPAADLRGLIDRTRFAISTEETRYYLNGIYLHAAKSKMGGLETPVLRAV 179

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRLA  E+ +      +P +I+PRK V EI +++      +++S+S+++I    +S
Sbjct: 180 ATDGHRLARVEMPLPDGAEGIPGVIIPRKTVTEIRKLVDEAADRIELSMSDNKIRFGFDS 239

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + ++ +LIDG FP+Y+ VIP  NDK + V+      AVDRV+ +S+ + +AVKLSL    
Sbjct: 240 VVVTSKLIDGTFPDYERVIPVGNDKVMEVDAKLFAAAVDRVATISTEKSRAVKLSLVRGA 299

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  +P+ G A E + V Y E P++I FN +YLL+I   I       +   F L  + 
Sbjct: 300 LTLSATSPESGSATEELEVNYAEAPLEIGFNSRYLLDITQQIEG-----EGAQFTLADAA 354

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   IR    D  ++      A YVLMPMR+
Sbjct: 355 SPTIIR----DVADS-----TALYVLMPMRV 376


>gi|294675559|ref|YP_003576174.1| DNA polymerase III subunit beta [Rhodobacter capsulatus SB 1003]
 gi|294474379|gb|ADE83767.1| DNA polymerase III, beta subunit [Rhodobacter capsulatus SB 1003]
          Length = 372

 Score =  282 bits (721), Expect = 7e-74,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DG+ +    +   G  +++  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGSLVQLSDDAAAG-RLSVMAGRSSFNLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   + VLK L +++ FA++TEE RYYLNG++ H+   E+   L  VATDG
Sbjct: 120 MASSEYTANFAAKAGVLKRLFDKSKFAISTEETRYYLNGVYMHVATGEDGPALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   ++ + VS+SE+++      ++++
Sbjct: 180 HRLARIDAVLPEGANGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPMGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDAGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|119385559|ref|YP_916614.1| DNA polymerase III subunit beta [Paracoccus denitrificans PD1222]
 gi|119376154|gb|ABL70918.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222]
          Length = 372

 Score =  281 bits (720), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 230/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+D+++ +  A  ++ER+NTIP+  +VL++A    +  +A+  + EI    PA 
Sbjct: 1   MKFSIERADLVKAVSQAQSVVERRNTIPILANVLIEAAPEGVSFRATDLDTEIVDRAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L DI RKL DGA +    +   G  +++  G SNF L + P  +FP 
Sbjct: 61  VERPGATTVSAGMLNDIARKLPDGALVQLSLDAASG-RLSVQAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   ++VL+ L +++ FA++ EE RYYLNG++ H+   E+   L  VATDG
Sbjct: 120 MSSSEYGANFSAPAAVLRRLFDKSKFAISNEETRYYLNGVYMHVAQTEDGPGLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  + A    MP +IVPRK V E+ ++L   ++ + VS+SE+++     +++++
Sbjct: 180 HRLARIDAPLPAGAEDMPGVIVPRKTVAELRKLLDDDEAEIAVSVSETKVRFATPTITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPSGNARKLEVDAGDFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y + P++I FN KYL EI   I       +  VF  + S  +  
Sbjct: 300 VNAPDAGAADEELPVAYADEPLEIGFNAKYLHEIASQIER-----ENAVFLFNGSGDAAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +    +A YV+MPMR+
Sbjct: 355 IR---------EGGDTSAVYVVMPMRV 372


>gi|144900239|emb|CAM77103.1| DNA polymerase III subunit beta [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 372

 Score =  281 bits (719), Expect = 1e-73,   Method: Compositional matrix adjust.
 Identities = 149/387 (38%), Positives = 223/387 (57%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ L H   ++ER+NTIP+  +V L+   G L + A+  +++I    PA 
Sbjct: 1   MKLTIERAQLLKSLAHVQSVVERRNTIPILSNVKLEGRPGSLSLNATDMDLDIIETAPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T  AH  Y+IVRKL DG+Q+    + + G  + +  G S F L   P  +FP 
Sbjct: 61  VSRPGATTAPAHTFYEIVRKLPDGSQVEIEHDADTGL-MTLRSGRSKFTLSCLPVEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E  ++F L ++ LK LV+RT FA++TEE RYYLNGI+ H         L AVATDG
Sbjct: 120 LSGGELPFTFCLTAAELKALVDRTRFAISTEETRYYLNGIYLHAATTPGGEVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  EV +    A MP +I+PRK V E+ +++   +  V VSLSE+++        ++
Sbjct: 180 HRLARVEVTLPEGAAGMPGVIIPRKTVQEMRKLIDETEGEVTVSLSETKLRFAFADAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK+L V+  +  QAVDRVS +S+ + +A+KLSL    + ++
Sbjct: 240 SKLIDGTFPDYERVIPADNDKQLDVDVKSFAQAVDRVSAISTEKSRAIKLSLEKGTVTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +P+ G A E +   Y   P++I FN +YLL+I+  +       D+  F +  + S   
Sbjct: 300 ASSPENGSATEEIEAQYESTPLEIGFNSRYLLDILGQVEG-----DKACFSMADAASPTV 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D  N       A YVLMPMR+
Sbjct: 355 VR----DGVN-----AGAIYVLMPMRV 372


>gi|319898310|ref|YP_004158403.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73]
 gi|319402274|emb|CBI75813.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73]
          Length = 373

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 153/387 (39%), Positives = 239/387 (61%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I + RS +L+ L    R++ER+N IP+  +VL+ A+ G +++KA+  ++E+  +   +
Sbjct: 1   MRIIIGRSQLLKSLSRVHRVVERRNAIPILSNVLIDASSGGMQLKATDLDLEVIESSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D +++    +    + ++++ G +NF LQ  P+ +FP 
Sbjct: 61  IEKAGAITVPAHLLYDIVRKLPDDSEVILEVDENQPSTMSVTSGCANFRLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FHI ++   KL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHIIDDGTSKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  +    MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ ++
Sbjct: 181 RLAQVDIEAPSGAGGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L +N  +   AVDRVS +SS R  AVKL++    L   
Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLVINRQDFSSAVDRVSTISSDRGCAVKLTIEKGLLRFV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y    ++I FN +YLL+I   ISS      E++F L    +   
Sbjct: 301 VNNPDSGSAEDQLVADYASDLLEIGFNSRYLLDIAAQISS-----HEMIFMLADPGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IRG         +   NA YVLMP+R+
Sbjct: 356 IRG---------NGDTNALYVLMPIRV 373


>gi|23006928|ref|ZP_00049021.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 328

 Score =  281 bits (718), Expect = 2e-73,   Method: Compositional matrix adjust.
 Identities = 149/328 (45%), Positives = 207/328 (63%), Gaps = 5/328 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+  +  L +KA+  +IE+T  +PA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGEDGLRLKATDLDIEVTETVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     + G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGDTG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  +SF +A++ LK L+E+T FA++TEE RYYLNGI+ H  E D  LKL AVATDG
Sbjct: 120 LAAGELPHSFSIAAAELKLLIEKTQFAISTEETRYYLNGIYLHTVEVDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237
           HRLA  E         MP IIVPRKAV EI +++     SV+V LS ++I L     +++
Sbjct: 180 HRLARVETAAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL+++  ++ +
Sbjct: 240 ISKLIDGTFPDYQRVIPSGNDKHLTVVRDAFAKAVDRVSTISSERGRAVKLAMADGRVAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFN 325
           +V NPD G   E+         +DI F 
Sbjct: 300 SVTNPDAGSRTENSTSITRPW-LDIGFK 326


>gi|254465740|ref|ZP_05079151.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I]
 gi|206686648|gb|EDZ47130.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I]
          Length = 373

 Score =  280 bits (716), Expect = 3e-73,   Method: Compositional matrix adjust.
 Identities = 150/388 (38%), Positives = 235/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLAVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+    E    L AVATD
Sbjct: 120 MASSEYHSNFAAKAAVLRRLFDKSKFAISTEETRYYLNGVYLHVANGAEGGKALRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   D  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDAELPLGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+     QAVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFAQAVDRVATVSSERSRAVKLQLEEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V YN+  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYNDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDESAVYVVMPMRV 373


>gi|56551876|ref|YP_162715.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761806|ref|ZP_04759892.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|56543450|gb|AAV89604.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373720|gb|EER63280.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 369

 Score =  279 bits (714), Expect = 4e-73,   Method: Compositional matrix adjust.
 Identities = 147/386 (38%), Positives = 235/386 (60%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A ++G +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G  TVSAH+L++IVRKL DG+QI     +    ++ I  G S F L + P  +FP
Sbjct: 61  EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E E    F L +  LK ++++T FA++ +E RYYLNGIF H+ +++  + A ATDGH
Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   +   A    MP +I+PRK V E+ ++L   +  +K+SLS S+I  ++    ++ 
Sbjct: 178 RLACVTIPAPAGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP +NDK L+V   +L Q VDRV+ ++S + +AVK+S+ + K+ ++V
Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G A E +   Y+  P+DI FN +YLL+I+  I S     D+    L  + +   I
Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  D+ +         A YVLMPMR+
Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369


>gi|85374293|ref|YP_458355.1| DNA polymerase III subunit beta [Erythrobacter litoralis HTCC2594]
 gi|84787376|gb|ABC63558.1| DNA polymerase III beta subunit [Erythrobacter litoralis HTCC2594]
          Length = 375

 Score =  279 bits (714), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 158/393 (40%), Positives = 232/393 (59%), Gaps = 26/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAI-P 58
           MK T+ER+ +L  L H   ++ER+NTIP+  ++L++A DG  +++ A+  ++++   +  
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNILIEAGDGSAVKVMATDLDLQVVETMNA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
           ASV+  GS TVSAHLL+DI RKL DG+Q+S    +N +     I  G S F L + P+ +
Sbjct: 61  ASVESSGSTTVSAHLLFDIARKLPDGSQVSLEVADNRM----TIKAGRSRFQLPTLPKDD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVAT 176
           FP   E +   SFE+ +  L  L++RT FA++TEE RYYLNGIF H+++ED   L A AT
Sbjct: 117 FPVIVEGDLPTSFEIPAKTLAELIDRTRFAISTEETRYYLNGIFLHVSDEDTPVLKAAAT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235
           DGHRLA   +        MP +IVPRKAVGE+ ++L  + D +V V LS S+I   +   
Sbjct: 177 DGHRLARFTLARPDGADGMPDVIVPRKAVGELRKLLEERMDGNVVVDLSASKIRFTLGGE 236

Query: 236 SMSV---RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             +V   +LIDG FP+Y  VIP  NDK L+V+  +  + VDRV+ +++ + +AVK+ L +
Sbjct: 237 GGTVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKSFFEGVDRVATIATEKTRAVKMGLDA 296

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           DK+ ++V +PD G A E +   Y     +I FN  YL +I+  I S     D V   L  
Sbjct: 297 DKVTLSVTSPDNGTASEELAAEYKSEGFEIGFNANYLKDILSQIDS-----DMVELHLAD 351

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +   IR         KD    A YVLMPMR+
Sbjct: 352 AGAPTLIR---------KDENSPALYVLMPMRV 375


>gi|89052493|ref|YP_507944.1| DNA polymerase III subunit beta [Jannaschia sp. CCS1]
 gi|88862042|gb|ABD52919.1| DNA polymerase III, beta subunit [Jannaschia sp. CCS1]
          Length = 372

 Score =  279 bits (713), Expect = 5e-73,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 231/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L  +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKLSIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGETVSFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DG+ +S   E+   + + I  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGSLVSL-TEDTTTSRLTIEAGRSSFQLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               +Y  +F   +  L+ L +++ FA++TEE RYYLNG++FHI E D    L AVATDG
Sbjct: 120 MASTDYAANFSAKAPELRRLFDKSKFAISTEETRYYLNGVYFHIAEGDNGKALRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +     +MP +IVPRK VGE+ ++L   D+ + VS+SE++I      ++++
Sbjct: 180 HRLARIDSALPDGAQEMPGVIVPRKTVGELRKLLDDDDAQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + + V+  +  +AVD V+ +SS R +AVK++L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPAGNTRRMEVDAGDFAKAVDLVATVSSERSRAVKMALDEDRLMLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A   + V Y +  ++I FN KYLLEI     + +V  +  VF   S      
Sbjct: 300 VNAPDSGNAEAELVVAYADEKLEIGFNAKYLLEI-----ASQVDRENAVFMFSSPAEPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  + DS         A YV+MPMR+
Sbjct: 355 MREGNDDS---------AIYVVMPMRV 372


>gi|260752565|ref|YP_003225458.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551928|gb|ACV74874.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 369

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 146/386 (37%), Positives = 234/386 (60%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A ++G +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G  TVSAH+L++IVRKL DG+QI     +    ++ I  G S F L + P  +FP
Sbjct: 61  EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E E    F L +  LK ++++T FA++ +E RYYLNGIF H+ +++  + A ATDGH
Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   +        MP +I+PRK V E+ ++L   +  +K+SLS S+I  ++    ++ 
Sbjct: 178 RLACVTIPAPVGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP +NDK L+V   +L Q VDRV+ ++S + +AVK+S+ + K+ ++V
Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G A E +   Y+  P+DI FN +YLL+I+  I S     D+    L  + +   I
Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  D+ +         A YVLMPMR+
Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369


>gi|254439754|ref|ZP_05053248.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307]
 gi|198255200|gb|EDY79514.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307]
          Length = 372

 Score =  277 bits (708), Expect = 2e-72,   Method: Compositional matrix adjust.
 Identities = 147/387 (37%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A+      +A+  +IE+     A 
Sbjct: 1   MKISIERASLLKAVAQAQSVVERRNTIPILANVLIEASGDEATFRATDLDIEVVDKATAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L +IVRKL DGA ++   ++  G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLNEIVRKLPDGALVTLTDDSASG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               +Y  +F   + VL+ L +++ FA++TEE RYYLNG++ H++E D    L  VATDG
Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      M  +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDDMMIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N +++ V+     +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E ++V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372


>gi|296285052|ref|ZP_06863050.1| DNA polymerase III subunit beta [Citromicrobium bathyomarinum
           JL354]
          Length = 375

 Score =  276 bits (706), Expect = 3e-72,   Method: Compositional matrix adjust.
 Identities = 156/392 (39%), Positives = 230/392 (58%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAI-P 58
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL+ A+  G +++ A+  ++++   +  
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDADAGGGVKVMATDLDLQVVETMTA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+ITVSAHLL+DI RKL DG+Q+S    +     + +  G S F L + P  +F
Sbjct: 61  ASVESAGAITVSAHLLFDIARKLPDGSQVSLETAD---NRMVVKAGRSRFQLPTLPRDDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATD 177
           P   E E   SFEL +  L  +++RT FA++TEE RYYLNGIF H+++E    L A ATD
Sbjct: 118 PVIVEGELPTSFELPARELAEMIDRTRFAISTEETRYYLNGIFLHVSDEARPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234
           GHRLA   +D       MP +IVPRKAVGE+ ++L    DS+V++ LS S+I   +    
Sbjct: 178 GHRLARYTLDRPEGAEGMPDVIVPRKAVGELRKLLEEALDSNVQIDLSASKIRFALGGEG 237

Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + ++ +LIDG FP+Y  VIP  NDK LR++     Q VDRV+ +++ + +AVK+ L  D
Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLRLDPKAFFQGVDRVATIATEKTRAVKMGLDED 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           K+ ++V +PD G A E +   Y     +I FN  YL +I+  I S     D V   L  +
Sbjct: 298 KVTLSVTSPDNGTAAEEIAAEYKAEGFEIGFNANYLKDILGQIDS-----DTVELHLADA 352

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR         +D    A YVLMPMR+
Sbjct: 353 GAPTLIR---------RDENSPALYVLMPMRV 375


>gi|114769643|ref|ZP_01447253.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255]
 gi|114549348|gb|EAU52230.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255]
          Length = 372

 Score =  276 bits (705), Expect = 5e-72,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ERS +L+ +  A  ++ER+NTIP+  +VL++A  G +  +A+  +IE+   +   
Sbjct: 1   MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AH L++IVRKL DGA +    ++     +++  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVGAHTLHEIVRKLPDGAMVEL-TDDATANRLDVVAGRSSFSLATLPREDFPI 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   S  L+ L +++ FA++TEE RYYLNG++ H +  E    L  VATDG
Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      +P +IVPRK VGE+ ++L   +  + VS+SE++I  +   + ++
Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     QAVDRVS +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDESAVYVVMPMRV 372


>gi|254451638|ref|ZP_05065075.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238]
 gi|198266044|gb|EDY90314.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238]
          Length = 372

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 145/387 (37%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L+ +  A  ++ER+NTIP+  +VL++A+      +A+  +IE+     A 
Sbjct: 1   MKLSIERASLLKAVAQAQSVVERRNTIPILANVLIEASGAEATFRATDLDIEVVDKATAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS TVSA  L +IVRKL DGA ++  +++  G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGSTTVSAVTLNEIVRKLPDGALVTLTEDSASG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               +Y  +F   + VL+ L +++ FA++TEE RYYLNG++ H++E D    L  VATDG
Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      M  +IVPRK VGE+ ++L   +  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDEMMIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N +++ V+     +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E ++V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372


>gi|297184289|gb|ADI20406.1| DNA polymerase sliding clamp subunit (pcna homolog) [uncultured
           alpha proteobacterium EB080_L43F08]
          Length = 372

 Score =  276 bits (705), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ERS +L+ +  A  ++ER+NTIP+  +VL++A  G +  +A+  +IE+   +   
Sbjct: 1   MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AH L++IVRKL DGA +    ++     +++  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVGAHTLHEIVRKLPDGAMVEL-TDDATANRLDVVAGRSSFSLATLPREDFPI 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   S  L+ L +++ FA++TEE RYYLNG++ H +  E    L  VATDG
Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      +P +IVPRK VGE+ ++L   +  + VS+SE++I  +   + ++
Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     QAVDRVS +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVGYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDESAVYVVMPMRV 372


>gi|310816810|ref|YP_003964774.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25]
 gi|308755545|gb|ADO43474.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25]
          Length = 372

 Score =  275 bits (704), Expect = 6e-72,   Method: Compositional matrix adjust.
 Identities = 144/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ +  A  ++ER+N IP+  +VL+ A    ++ +A+  +IE+  +  A 
Sbjct: 1   MKFSIERSALLKAVAQAQSVVERRNAIPILSNVLIAAEGAAVQFRATDLDIEVQDSAVAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A +L +IVRKL DGA ++   +      + I+ G S F L + P+ +FP+
Sbjct: 61  VEQAGAATVNAAMLNEIVRKLPDGALVAITYDPS-AERLTIAAGRSTFTLATLPQQDFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               ++  SF   + +L+ L +++ FA++TEE RYYLNG++FHI   EE   L AVATDG
Sbjct: 120 MASADFEASFTAPAPLLRRLFDKSKFAISTEETRYYLNGVYFHIATGEEGPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK VGE+ ++L   ++ + VS+SE++I     +++++
Sbjct: 180 HRLARIDAPLPDGAAGMPGVIVPRKTVGELRKLLDDDNALIAVSVSETKIRFATPNITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALEDDRLLLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +PD G A E + V Y +  ++I FN KYL EI     + +V  +  VF L+       
Sbjct: 300 VQSPDTGAAEEELVVAYADERLEIGFNAKYLQEI-----AAQVDRENAVFMLNGPGDPAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         +    +A YV+MPMR+
Sbjct: 355 MR---------EGGDTSAVYVVMPMRV 372


>gi|260431697|ref|ZP_05785668.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415525|gb|EEX08784.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 373

 Score =  273 bits (699), Expect = 2e-71,   Method: Compositional matrix adjust.
 Identities = 148/388 (38%), Positives = 236/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQVLFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F  ++++L+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGPEGGKVLRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+ A    MP +IVPRK VGE+ ++L   D  + VS+SE+++      +++
Sbjct: 180 GHRLARIDADLPAGAEDMPGVIVPRKTVGELRKLLEDDDMDIAVSVSETKVRFATPDITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP +N ++L V+     QAVDRV+ +SS R +AVKL L +DKL +
Sbjct: 240 TSKVIDGTFPDYTRVIPQNNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLENDKLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYL EI     + +V  +  VF  +S+    
Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLQEI-----ASQVDRENAVFLFNSAGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373


>gi|149184745|ref|ZP_01863063.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21]
 gi|148832065|gb|EDL50498.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21]
          Length = 374

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 153/392 (39%), Positives = 229/392 (58%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL++A    L + A+  ++++   I  A
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAEGNGLRVMATDLDLQVVEHIEAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
           SV+  G+ITVSAHLL+DI RKL +G+Q+S    EN +    ++  G S F L + P  +F
Sbjct: 61  SVESDGAITVSAHLLFDIARKLPEGSQVSLETAENRM----DVKAGRSRFKLPTLPRDDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATD 177
           P   E +   SF L +  L  +++RT FA++TEE RYYLNGIF H+++ED   L A ATD
Sbjct: 117 PMIVEGDLPTSFSLPAKTLAEMIDRTRFAISTEETRYYLNGIFLHVSDEDQPVLKAAATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234
           GHRLA   +        MP +IVPRKAV E+ ++L  K D  V++ LS S+I   +    
Sbjct: 177 GHRLARFTLARPEGAEGMPDVIVPRKAVAELRKLLDEKMDGDVQIDLSASKIRFTLGGEG 236

Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + ++ +LIDG FP+Y  VIP  NDK L+++  +    VDRV+ +++ + +AVK+ L  D
Sbjct: 237 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKIDPKSFFAGVDRVATIATEKTRAVKMGLDKD 296

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +TV +PD G A E +   Y     +I FN  YL +I+  I S     D+V   L  +
Sbjct: 297 RVTLTVTSPDNGTASEELAAEYGSDGFEIGFNAGYLKDILSQIDS-----DQVEIHLADA 351

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR         K++   A YVLMPMR+
Sbjct: 352 GAPTLIR---------KNDDSPALYVLMPMRV 374


>gi|114568556|ref|YP_755236.1| DNA polymerase III subunit beta [Maricaulis maris MCS10]
 gi|114339018|gb|ABI64298.1| DNA polymerase III, beta subunit [Maricaulis maris MCS10]
          Length = 372

 Score =  273 bits (699), Expect = 3e-71,   Method: Compositional matrix adjust.
 Identities = 150/387 (38%), Positives = 225/387 (58%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++E++NTIP+  +VL+ A        A+  +IEI     AS
Sbjct: 1   MKLTIERATLLKALGHVQAVVEKRNTIPILSNVLISAGPDGASFAATDLDIEILETTDAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G +T  AH LYDI RKL DGA ++  + N     + +  G S+F L S P  +FP 
Sbjct: 61  CDGEGLVTAPAHTLYDITRKLPDGADVTL-EMNGSDPRLTLKAGRSSFSLPSLPPGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              E+  + F++ +  L  L+++T FA++TEE RYYLNGI  H  ++D +  L AVATDG
Sbjct: 120 MPTEDLEHRFQVPARELARLIDKTRFAISTEETRYYLNGIHLHAADQDGRKTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+AEVD+      MP +IVPRK V E+ R+L   D  V+VS+SE +I   +    ++
Sbjct: 180 VRLALAEVDLPDGADGMPGVIVPRKTVQEVKRLLEDADDDVEVSVSEGKIRFRLGRAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  N + + V      +AVDRV+ +S  + ++VKLSL +D L + 
Sbjct: 240 SKLIDGAFPDYERVIPRGNTRLMSVENKRFAEAVDRVATISVEKSRSVKLSLGADALTLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NP+ G+A E + V Y++    I FN +Y+L++   I       DE  F    + S   
Sbjct: 300 VNNPESGQAEEELAVSYSDEGFAIGFNARYMLDVASQIEG-----DEARFHFADAASPAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +     DS +      +A YVLMP+R+
Sbjct: 355 V----TDSGDP-----DALYVLMPLRV 372


>gi|254510311|ref|ZP_05122378.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534022|gb|EEE37010.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11]
          Length = 373

 Score =  273 bits (697), Expect = 4e-71,   Method: Compositional matrix adjust.
 Identities = 147/388 (37%), Positives = 236/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQALFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
               EY  +F  ++++L+ L +++ FA++TEE RYYLNG++ H+   ++    L  VATD
Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGSDGGKVLRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+    A +P +IVPRK VGE+ ++L   +  + VS+SE++I      +++
Sbjct: 180 GHRLARIDADLPDGAADLPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKIRFATPDITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N ++L V+     QAVDRV+ +SS R +AVKL L +DKL +
Sbjct: 240 TSKVIDGTFPDYTRVIPQGNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLDADKLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +S+    
Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSAGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373


>gi|163743747|ref|ZP_02151121.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10]
 gi|161383008|gb|EDQ07403.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10]
          Length = 373

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 236/389 (60%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A   +++ +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYHSNFTANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R G D+          +A YV+MPMR+
Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373


>gi|163738135|ref|ZP_02145551.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107]
 gi|161388751|gb|EDQ13104.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107]
          Length = 373

 Score =  271 bits (693), Expect = 1e-70,   Method: Compositional matrix adjust.
 Identities = 147/389 (37%), Positives = 236/389 (60%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A   +++ +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYHSNFSANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R G D+          +A YV+MPMR+
Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373


>gi|259417199|ref|ZP_05741118.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B]
 gi|259346105|gb|EEW57919.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B]
          Length = 373

 Score =  270 bits (689), Expect = 3e-70,   Method: Compositional matrix adjust.
 Identities = 149/389 (38%), Positives = 237/389 (60%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLNADAATG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLK-LCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+   E   K L  VATD
Sbjct: 120 MATSEYHSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y++  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R G D+          +A YV+MPMR+
Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373


>gi|254474541|ref|ZP_05087927.1| DNA polymerase III, beta subunit [Ruegeria sp. R11]
 gi|214028784|gb|EEB69619.1| DNA polymerase III, beta subunit [Ruegeria sp. R11]
          Length = 373

 Score =  269 bits (688), Expect = 4e-70,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A     + +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYHSNFTANAAILRRLFDKSKFAISTEETRYYLNGVYMHVADAVEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLQLDDDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y++  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFLFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDESAVYVVMPMRV 373


>gi|99079843|ref|YP_611997.1| DNA polymerase III subunit beta [Ruegeria sp. TM1040]
 gi|99036123|gb|ABF62735.1| DNA polymerase III, beta subunit [Ruegeria sp. TM1040]
          Length = 373

 Score =  269 bits (688), Expect = 5e-70,   Method: Compositional matrix adjust.
 Identities = 149/389 (38%), Positives = 237/389 (60%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLDADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLK-LCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H+   E   K L  VATD
Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+      MP +IVPRK VGE+ ++L   D  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y++  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R G D+          +A YV+MPMR+
Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373


>gi|87199450|ref|YP_496707.1| DNA polymerase III subunit beta [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135131|gb|ABD25873.1| DNA polymerase III, beta subunit [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 375

 Score =  269 bits (687), Expect = 6e-70,   Method: Compositional matrix adjust.
 Identities = 151/392 (38%), Positives = 231/392 (58%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL++A  D  + + A+  +++I   + A
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAAPDSTVRLMATDLDLQIIETMSA 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            SV+  G+ITVSAHLL+DI RKL DG+Q+S    +     + +  G S F L + P  +F
Sbjct: 61  VSVEAPGAITVSAHLLFDIARKLPDGSQVSLETSDN---RMIVKAGRSRFQLPTLPRDDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVATD 177
           P   E +   SFE+ +  L  L++RT FA++TEE RYYLNGIF H++++    L A ATD
Sbjct: 118 PVIVEGDLPTSFEIPARTLAELIDRTRFAISTEETRYYLNGIFLHVSDDPQPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI---E 233
           GHRLA   +        MP +IVPRK VGE+ ++L    DS+V + LS S+I   +    
Sbjct: 178 GHRLARFTITRPDGAEGMPDVIVPRKCVGELRKLLEEVLDSAVLIDLSASKIRFTLGGEN 237

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + ++ +LIDG FP+Y  VIP  NDK L+++  +  + VDRV+ +++ + +AVK++L +D
Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKLDPRSFFEGVDRVATIATEKTRAVKMALEND 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ ++V +PD G A E +   Y+    +I FN  YL +I+  I       D V   L  +
Sbjct: 298 RVTLSVTSPDNGTAAEELPADYSSTGFEIGFNANYLKDILSQIDG-----DTVELHLADA 352

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR         KD+K  A YVLMPMR+
Sbjct: 353 GAPTLIR---------KDDKSAALYVLMPMRV 375


>gi|126738626|ref|ZP_01754331.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6]
 gi|126720425|gb|EBA17131.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6]
          Length = 373

 Score =  269 bits (687), Expect = 7e-70,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A     + +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  +++  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTSDAATG-RLSVDAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H++   E    L  VATD
Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +  +      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDAPLPLGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLEEDRLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDESAVYVVMPMRV 373


>gi|86139416|ref|ZP_01057985.1| DNA polymerase III subunit beta [Roseobacter sp. MED193]
 gi|85823919|gb|EAQ44125.1| DNA polymerase III subunit beta [Roseobacter sp. MED193]
          Length = 373

 Score =  268 bits (685), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 146/389 (37%), Positives = 234/389 (60%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A   + + +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDVAQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H++   E    L  VATD
Sbjct: 120 MASSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKVLRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +  +      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDASLPVGAEDMPGVIVPRKTVGEMRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDADEFARAVDRVATVSSERSRAVKLQLEEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R G D+          +A YV+MPMR+
Sbjct: 355 LMREGSDE----------SAVYVVMPMRV 373


>gi|296532158|ref|ZP_06894919.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis
           ATCC 49957]
 gi|296267517|gb|EFH13381.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis
           ATCC 49957]
          Length = 375

 Score =  268 bits (684), Expect = 1e-69,   Method: Compositional matrix adjust.
 Identities = 154/401 (38%), Positives = 226/401 (56%), Gaps = 42/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK +V+R+ +L+ L H   ++ER+NTIP+  +V+L A DG L + A+  EI I   +P  
Sbjct: 1   MKFSVDRAVLLKALAHVQSVVERRNTIPILANVMLAAQDGTLTLTATDMEIAIVEDVPGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS------- 112
           +V   G  T  A  LY+IVRKL DGA++          E++ + GD+   L++       
Sbjct: 61  TVSRAGRTTAPAATLYEIVRKLPDGAKV----------ELDHAGGDAPLALRAGRFATSL 110

Query: 113 --FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
              P  +FPS  E +  + F++  ++L+ LV+RT FA++TEE RYYLNGI+ H  E D +
Sbjct: 111 MVLPVEDFPSMTEGKLPHGFQIPPALLRELVDRTKFAISTEETRYYLNGIYLHATEVDGQ 170

Query: 171 --LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L AVATDGHRLA  E  +      MP +IVPRK V EI ++      +++V LS+++I
Sbjct: 171 KVLRAVATDGHRLARVEEPLPEGAEGMPGVIVPRKTVNEIRKLADETGDAIEVKLSDTKI 230

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                S+ ++ +LIDG FP Y+ VIP  NDK + V+      AV RV+ +SS R + VKL
Sbjct: 231 SFAFGSVRLTSKLIDGTFPEYERVIPRGNDKIMTVDKKAFADAVSRVAAISSERSRPVKL 290

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           SL  D L +T  +PD G+A E ++   V Y   P++I F  +YL +I D I+      ++
Sbjct: 291 SLKQDSLTLTASSPDQGQAEEELDNGAVSYGSGPIEIGFQARYLADITDQIA------EK 344

Query: 346 VVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V FR  D S  +V +             K  A YVLMPMR+
Sbjct: 345 VEFRFADGSAPTVVVDAA----------KPEALYVLMPMRV 375


>gi|85708877|ref|ZP_01039943.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1]
 gi|85690411|gb|EAQ30414.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1]
          Length = 375

 Score =  265 bits (677), Expect = 8e-69,   Method: Compositional matrix adjust.
 Identities = 151/393 (38%), Positives = 228/393 (58%), Gaps = 26/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL+ A+DG  +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDASDGGSVKVMATDLDLQVVETMNA 60

Query: 60  S-VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
           S V+  G+ITVSAHLL+DI RKL DGAQ+S    EN +     +  G + F L + P  +
Sbjct: 61  SSVESPGAITVSAHLLFDIARKLPDGAQVSLETAENRM----EVKAGRARFKLPTLPRDD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCAVAT 176
           FP   E +   SFE+ +  L  +++ T FA++TEE RYYLNGIF H+ +ED   L A AT
Sbjct: 117 FPVIVEGDLPTSFEIPARTLAQMIDATRFAISTEETRYYLNGIFLHVTDEDEPVLKAAAT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES- 234
           DGHRLA   +        MP +IVPRKAV E+ ++L    D +V+V LS S+I   +   
Sbjct: 177 DGHRLARFTLARPDGAEGMPDVIVPRKAVAELRKLLEEALDGAVQVDLSASKIRFTLGGE 236

Query: 235 --LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             + ++ +LIDG FP+Y  VIP  NDK L+V+     + VDRV+ +++ + +AVK+ L +
Sbjct: 237 GGVVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKLFFEGVDRVATIATEKTRAVKMGLDA 296

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           DK+ ++V +PD G A E +   Y     +I FN  YL +I+    +     +E+   L  
Sbjct: 297 DKVTLSVTSPDNGNAAEELMADYKSDGFEIGFNANYLKDILGQFDA-----EEIELHLAD 351

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +   IR  D            A YVLMPMR+
Sbjct: 352 AGAPTLIRESDTSP---------ALYVLMPMRV 375


>gi|329113488|ref|ZP_08242269.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001]
 gi|326697313|gb|EGE48973.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001]
          Length = 374

 Score =  265 bits (676), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 148/390 (37%), Positives = 223/390 (57%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ER+ +L+ L H   + E++NTIP+  +VL+QA +G L +KA+  EIE+   +PA+
Sbjct: 1   MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEGVPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ T  A +LY+IVRKL DG  +   + +  G  + +  G     L      +FPS
Sbjct: 61  ITREGATTAPASVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               ++ Y F+L ++ L +L++RT FA++TEE RYYLNGIF H  E D   KL AVATDG
Sbjct: 120 MGAGDFPYRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEPKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E D+ +  A MP +IVPRK V E+ +++      V+++LSE+RI      ++++
Sbjct: 180 HRLARVEADLPSGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP +N + LRV   +   AV RV+ +S  R + VKL+L    L ++
Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             + + G A E ++   + Y+   ++I F  +YL +I D       V+ EV F    S S
Sbjct: 300 ASSTEQGMAKEELDDNRISYDAEGLEIGFQARYLNDITDQ------VEKEVEFAFADSAS 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R  D  S         A YVLMPMR+
Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374


>gi|329847539|ref|ZP_08262567.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19]
 gi|328842602|gb|EGF92171.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19]
          Length = 373

 Score =  264 bits (675), Expect = 1e-68,   Method: Compositional matrix adjust.
 Identities = 143/387 (36%), Positives = 229/387 (59%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ER  +L+ LGH   ++ER+NTIP+  +VLL A  G +   A+  ++EI     A+
Sbjct: 1   MQFTIERGALLKALGHVQNVVERRNTIPILSNVLLSAERGQVSFSATDLDMEIVDTAEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G IT  AH LY+IVRKL DGA +           + +S G S F L   P  +FP 
Sbjct: 61  VSVPGQITAPAHTLYEIVRKLPDGADVELKFSAGDDPRLAVSAGRSRFALPVLPAGDFPI 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              +    SF +    LK L+++T FA++TEE RYYLNG++ H   ED    L AVATDG
Sbjct: 121 MSSDHEGVSFSILRDDLKRLIDKTRFAVSTEETRYYLNGMYLHTLSEDGSNYLRAVATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE+      A  P +I+PRK + +  R+L      V++++S ++I   + + S++
Sbjct: 181 HRLALAEMPAPEGSAGGPGVIIPRKTIDQARRLLDDGTGYVELTISPAKIRFQLGNASLT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +NDK + ++   L +AVDRVS +S+ + ++VK+++   +L ++
Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKVMMIDTGILAKAVDRVSTISAEKSRSVKMAIEPGRLTLS 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E   + Y+   +DI FN +Y+L+++  I  ++V   E+ F  D+S+ ++ 
Sbjct: 301 VRNIEAGQAVEEAEIDYDNDSIDIGFNARYILDVMGQIGGEQV---ELRF-ADASSPTLV 356

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +        +  DN V   YVLMP+R+
Sbjct: 357 L--------DPADNGVQ--YVLMPLRV 373


>gi|258542325|ref|YP_003187758.1| DNA polymerase III subunit beta [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633403|dbj|BAH99378.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636462|dbj|BAI02431.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639515|dbj|BAI05477.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642571|dbj|BAI08526.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645626|dbj|BAI11574.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648679|dbj|BAI14620.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651732|dbj|BAI17666.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654723|dbj|BAI20650.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-12]
          Length = 374

 Score =  263 bits (672), Expect = 3e-68,   Method: Compositional matrix adjust.
 Identities = 148/390 (37%), Positives = 222/390 (56%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ER+ +L+ L H   + E++NTIP+  +VL+QA +G L +KA+  EIE+   +PA 
Sbjct: 1   MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEEVPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ T  A +LY+IVRKL DG  +   + +  G  + +  G     L      +FPS
Sbjct: 61  ITREGATTAPAAVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               ++ + F+L ++ L +L++RT FA++TEE RYYLNGIF H  E D   KL AVATDG
Sbjct: 120 MGAGDFPHRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEAKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E D+ A  A MP +IVPRK V E+ +++      V+++LSE+RI      ++++
Sbjct: 180 HRLARVEADLPAGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP +N + LRV   +   AV RV+ +S  R + VKL+L    L ++
Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             + + G A E ++   + Y+   ++I F  +YL +I D       V+ EV F    S S
Sbjct: 300 ASSAEQGVAKEELDDNRISYDAEGLEIGFQARYLNDITDQ------VEKEVEFAFADSAS 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R  D  S         A YVLMPMR+
Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374


>gi|114798873|ref|YP_759292.1| DNA polymerase III subunit beta [Hyphomonas neptunium ATCC 15444]
 gi|114739047|gb|ABI77172.1| DNA polymerase III, beta subunit [Hyphomonas neptunium ATCC 15444]
          Length = 373

 Score =  263 bits (671), Expect = 4e-68,   Method: Compositional matrix adjust.
 Identities = 150/388 (38%), Positives = 228/388 (58%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER D+L+ L H   I+ER+ TIP+  +VLL+A  G L++ A+  +IE   +  A+
Sbjct: 1   MKLTIERGDLLDALSHVQNIVERRTTIPILSNVLLEATQGALKLTATDLDIEAVDSALAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T  A  L+D+VRKL  GA++   + N     + I+ G S F L + P ++F +
Sbjct: 61  VSRPGSVTAPAGTLFDVVRKLPSGAEVEL-ELNPESQRLTIAAGRSLFELPTLPAADFQT 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED---LKLCAVATD 177
              +E   SF++A+     L+++T FA++TEE RYYLNGI+ H  + D     L  VATD
Sbjct: 120 MTPDEGAVSFKIAAKDFARLIDKTRFAISTEETRYYLNGIYLHAAKADDGSAVLRTVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA+AE+       K+  +IVPRK VGE  R+L   D  V++ +S+++I L      +
Sbjct: 180 GHRLALAELKAPKGAEKLTGVIVPRKTVGEARRLLDGLDEDVEIEVSDTKIILRAGRAVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP  NDK++ V+      AVDRVS +S+ R ++VKLS+S+ +L +
Sbjct: 240 TSKLIDGSFPDYARVIPKGNDKKMTVDNKAFEAAVDRVSTVSAERSRSVKLSVSNGRLTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V++ + G   E +   Y   PM+I FN KYLL+I   I S EV   E +F   +S + V
Sbjct: 300 AVNHAETGAGNEEIEAEYESEPMEIGFNAKYLLDIAGQIESSEV---EFMFNDPASPALV 356

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D           +A +V+MP+R+
Sbjct: 357 LDPSDD-----------SARFVVMPLRV 373


>gi|326387150|ref|ZP_08208760.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208331|gb|EGD59138.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 356

 Score =  263 bits (671), Expect = 5e-68,   Method: Compositional matrix adjust.
 Identities = 147/372 (39%), Positives = 225/372 (60%), Gaps = 25/372 (6%)

Query: 20  IIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDI 77
           ++ER+NTIP+  +VL+ A   G +++ A+  +++I  ++PA SV+V G+ITVSAHLL+DI
Sbjct: 4   VVERRNTIPILSNVLIDAAATGSVKLMATDLDLQIIESMPAVSVEVPGAITVSAHLLFDI 63

Query: 78  VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137
            RKL DG+Q+S    +     + +  G S F L + P  +FP   E +   SFE+ +  L
Sbjct: 64  ARKLPDGSQVSLETADN---RMIVKAGRSRFQLPTLPRDDFPVIVEGDLPTSFEIPARTL 120

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
             L++RT FA++TEE RYYLNGIFFH+++E LK  A ATDGHRLA   +        MP 
Sbjct: 121 AELIDRTRFAISTEETRYYLNGIFFHVSDEVLK--AAATDGHRLARYTLPRPEGAEGMPD 178

Query: 198 IIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES---LSMSVRLIDGEFPNYQNVI 253
           +I+PRK VGE+ ++L    D++V V LS S++   +     + ++ +LIDG FP+Y  VI
Sbjct: 179 VIIPRKCVGELRKLLEDVLDTNVLVDLSASKVRFTLGGEFGVVLTSKLIDGTFPDYSRVI 238

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313
           P  NDK LR++  +  + VDRV+ +++ + +AVK++L +D++ ++V +PD G A E +  
Sbjct: 239 PTGNDKLLRLDPRSFFEGVDRVATIATEKTRAVKMALDTDRVTLSVTSPDNGTAAEELPA 298

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
            Y     +I FN  YL +I+  I       D V   L  +++   IR         KD+K
Sbjct: 299 DYQASGFEIGFNANYLKDILSQIDG-----DLVELHLADASAPTLIR---------KDDK 344

Query: 374 VNAFYVLMPMRI 385
             A YVLMPMR+
Sbjct: 345 SPALYVLMPMRV 356


>gi|296446087|ref|ZP_06888036.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
 gi|296256446|gb|EFH03524.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
          Length = 371

 Score =  262 bits (670), Expect = 6e-68,   Method: Compositional matrix adjust.
 Identities = 145/388 (37%), Positives = 226/388 (58%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++R+ +L+ L    RI E++ TIP+  H LL+ + G L I+A+  +IE    + A 
Sbjct: 1   MKLTIDRAPLLKALETTRRIAEQRTTIPILSHALLETDHGRLCIRATDLDIETRILLDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ VSA +L+D+ RKL + AQI+   E +   ++ +  G S F L + P   FP 
Sbjct: 61  IAETGALAVSAAVLHDLTRKLPEKAQITL--EGQEAGQLQMRSGRSRFKLSTLPADTFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
           T E  +   F L ++ L  ++ +T FA++TEE RYYLNG+FFH  E+D +  L  VATDG
Sbjct: 119 TTEHGFSADFALPAATLARMLGKTAFAISTEETRYYLNGVFFHHMEDDGRALLRMVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+  E +  A  A MP +IVPRKA  EI R+L  +++  ++++S +++  ++  +++S
Sbjct: 179 HRLSRIETEAPAGAAAMPGVIVPRKACAEIERLLKGQEAEARLAVSANKLRFSLGDVTLS 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK   ++ T +  A DRVS + S R +AVKLS  +  L ++
Sbjct: 239 TKLIDGTFPDYARVIPQGNDKRATLDRTAMAAAADRVSTIHSERGRAVKLSFDASALTLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSSV 357
           V NPDMG+A + M   Y+  P++I FN +YL E +  +       D  V RL D    ++
Sbjct: 299 VTNPDMGEARDEMEADYDSSPIEIGFNSRYLAEALQVLEG-----DSAVIRLADPGAPTL 353

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F              + +   VLMPMR+
Sbjct: 354 F----------QSATQPDLLIVLMPMRV 371


>gi|114326983|ref|YP_744140.1| DNA polymerase III subunit beta [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315157|gb|ABI61217.1| DNA polymerase III, beta chain [Granulibacter bethesdensis CGDNIH1]
          Length = 387

 Score =  261 bits (666), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 149/400 (37%), Positives = 222/400 (55%), Gaps = 40/400 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ER+ +L+ L H   ++E++NTIP+  +VLL+  DG L   A+  EI I   +PA 
Sbjct: 13  MKFKAERAVLLKALAHVQSVVEKRNTIPILANVLLEVKDGSLRFTATDMEIAIVEDVPAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112
               G++T  A  LY+IVRKL DGA +          E++   GD    L+S        
Sbjct: 73  GLRDGAVTAPAGTLYEIVRKLPDGADV----------ELDHQAGDQQLMLKSGRYATKLV 122

Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE---ED 168
             P  +FPS       + F LA +VL+ L++RT FA++TEE RYYLNGI+FH  +   + 
Sbjct: 123 VLPTDDFPSMTTGALPHQFRLAGNVLRGLIDRTRFAISTEETRYYLNGIYFHAAQGGPDG 182

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L AVATDGHRLA  E  +      MP +IVPRK V E+ ++L     +V V+LS++RI
Sbjct: 183 AALRAVATDGHRLARVEEPLPEGALGMPGVIVPRKTVAELRKLLDEVTDTVDVALSDTRI 242

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                 ++++ +LIDG FP Y+ VIP  NDK LRV   +   AV RV+ +SS R + VK+
Sbjct: 243 QFVAGPVTLTSKLIDGTFPEYERVIPKDNDKVLRVGKNDFSAAVARVAAISSERSRPVKM 302

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +L  + L ++  +PD G A E ++   + Y    ++I F  +YL +I D I+      +E
Sbjct: 303 ALDRNLLVLSASSPDQGTATEELDGDRIQYEAGALEIGFQARYLNDITDQIA------EE 356

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V FR    ++   +    +D+ ++     +A YVLMPMR+
Sbjct: 357 VEFRFADGSAPTVV----QDAADS-----SALYVLMPMRV 387


>gi|302381118|ref|YP_003816941.1| DNA polymerase III subunit beta [Brevundimonas subvibrioides ATCC
           15264]
 gi|302191746|gb|ADK99317.1| DNA polymerase III, beta subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 372

 Score =  260 bits (665), Expect = 2e-67,   Method: Compositional matrix adjust.
 Identities = 143/387 (36%), Positives = 220/387 (56%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS +L+ LGH   ++ER+NTIP+  +VLL A    L   A+  ++EI     A+
Sbjct: 1   MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEIVDEADAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G IT  AH LY+IVRKL DGA+++    N     + +  G S F L   P  +FP 
Sbjct: 61  VQVEGQITAPAHTLYEIVRKLPDGAEVAL-TYNGDDPRLTVQAGRSKFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC-AVATDG 178
              ++    F L    L  L+++T FA++TEE RYYLNG++ H + E  + L  AVATDG
Sbjct: 120 MSTDQSGARFTLMKDDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEGGIPLLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE       A  P +IVPRK + ++ R+L      V++S+S  +I       S++
Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTIDQVRRLLDDGTGPVEISVSPQKIRFEFGQASLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  NDK+  ++      AVDRV+ +S+ + ++VKL+   D++ +T
Sbjct: 240 SKVIDGAFPDYMRVIPKGNDKQADIDNAVFASAVDRVATISAEKSRSVKLAFELDRVTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+ +E + + Y+E P +I FN +YLL++   I+ +       +F   +S + V 
Sbjct: 300 VRNMEAGQGVEEVEIGYSEAPFEIGFNARYLLDVAGQITGENAT---FLFADPASPTLVL 356

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             G         D  V   YVLMP+R+
Sbjct: 357 DPG---------DPGVQ--YVLMPLRV 372


>gi|330994265|ref|ZP_08318193.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1]
 gi|329758732|gb|EGG75248.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1]
          Length = 380

 Score =  259 bits (662), Expect = 4e-67,   Method: Compositional matrix adjust.
 Identities = 150/399 (37%), Positives = 223/399 (55%), Gaps = 39/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R  +L+ L H   + E++NTIP+  +VL+   DG + + A+  EI +   + A 
Sbjct: 7   MKLKADRVTLLKALAHIQSVAEKRNTIPILANVLINVVDGAMTLTATDMEIAVVEGVAAE 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS--FPES-- 116
               G++T  A +LY+IVRKL DGAQ+          E++ + GD+   L++  F  S  
Sbjct: 67  TQRDGAVTAPAAVLYEIVRKLPDGAQV----------ELDHAGGDAPLGLRAGRFATSLN 116

Query: 117 -----EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK- 170
                +FPS       + F + + VL+ L++RT FA++TEE RYYLNGIF H+ E +   
Sbjct: 117 VLDVDDFPSMMAGALPHEFSMPAQVLRGLIDRTRFAISTEETRYYLNGIFLHVAEGETGP 176

Query: 171 -LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            L AVATDGHRLA  E ++ A  A MP +IVPRK V E+ ++L      V V+LS++RI 
Sbjct: 177 VLRAVATDGHRLARVETELPAGSAGMPGVIVPRKTVAELRKLLDEGPEQVAVALSDTRIQ 236

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
            +I +++++ +LIDG FP Y+ VIP  NDK LRV       AV RV+ +S  R + VKLS
Sbjct: 237 FSIGNITLTSKLIDGTFPEYERVIPHGNDKILRVGKKIFSDAVSRVAAISQERSRPVKLS 296

Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +  + L ++  + D G A E ++   V Y   P++I F  +YL +I D       V+ EV
Sbjct: 297 MGHNLLTLSAASQDQGTATEELDENHVSYAASPIEIGFQARYLNDITDQ------VEREV 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F    S++   +R  D  S         A YVLMPMR+
Sbjct: 351 EFAFSDSSAPTIVRDVDSPS---------ALYVLMPMRV 380


>gi|297717814|gb|ADI50050.1| DNA polymerase III beta subunit [Candidatus Odyssella
           thessalonicensis L13]
          Length = 375

 Score =  259 bits (662), Expect = 5e-67,   Method: Compositional matrix adjust.
 Identities = 137/390 (35%), Positives = 231/390 (59%), Gaps = 20/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER D L+ L H   ++E++ T+P+  HVL+QA D  L +  +  ++ +  +IPA 
Sbjct: 1   MKFAVERGDFLKALAHGGSVVEKRTTVPILSHVLIQAEDSQLHLTTTDMDLALVESIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GSITVSAH+L +IVRKL DG +I     N+   ++ +  G S F + + P  +FP 
Sbjct: 61  VEAPGSITVSAHMLLEIVRKLPDGVKIE-ATLNQANDQLTLKAGKSRFNIATLPAEQFPK 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             + +  +SF+L +  L+ L++R+ FAM+TEE RY+LNGI+FH +E + +    +VATD 
Sbjct: 120 LTQNDLPFSFKLTAEKLRYLIDRSRFAMSTEETRYFLNGIYFHAHEINGQKVFRSVATDA 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLNIESLS 236
           HRLA  EV +      +P IIV RK + EI ++++ +  ++ + +SLS  R+   +   +
Sbjct: 180 HRLACIEVPVPEGAESIPGIIVGRKTITEIRKLINDENPEAEITISLSPQRVEFKLPQAT 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +S RL+DG +P+Y+  IP  NDK + V+  +  +AVDRV+ +++ ++  +K+S++ +KL 
Sbjct: 240 LSSRLVDGTYPDYEQAIPKGNDKPVIVDAKDFAKAVDRVATVTTDKLPVIKISVAKNKLT 299

Query: 297 MTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +   + ++G A E M V +  +  ++I FN  YL++I   I      D+     L   ++
Sbjct: 300 LVAASSELGDATEEMEVDFPFDHSIEIGFNANYLVDITSQIG-----DEAAEILLSDGSA 354

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I+G      N+K+    A +VLMPMR+
Sbjct: 355 PAIIKG-----INDKE----ALFVLMPMRV 375


>gi|254417831|ref|ZP_05031555.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3]
 gi|196184008|gb|EDX78984.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3]
          Length = 372

 Score =  257 bits (656), Expect = 3e-66,   Method: Compositional matrix adjust.
 Identities = 141/387 (36%), Positives = 223/387 (57%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS +L+ LGH   ++ER+NTIP+  +VLL A    L   A+  ++E+     A+
Sbjct: 1   MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLAFAATDLDMEMVDEAEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+V G IT  AH LY+IVRKL +GA++S     +    + +S G S F L   P  +FP 
Sbjct: 61  VNVEGQITAPAHTLYEIVRKLPEGAEVSLLYSGD-DPRLVVSAGRSRFNLPVLPAGDFPI 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC-AVATDG 178
              +    S+ +    L  L+++T FA++TEE RYYLNG++ H + E  + L  AVATDG
Sbjct: 120 MSTDSAGASYVMPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEAGVALLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE       A  P +IVPRK V ++ R+L      V++++S  +I   I   S++
Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDAAGPVEITVSAQKIRFQIGEASLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  NDK+  ++     +AVDRV+ +S+ + ++VKL+  +D++ +T
Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNALFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A E + + Y++ P +I FN +YLL++   I+      +   FR     S   
Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ENAAFRFADPASPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +        +  D  V   YVLMP+R+
Sbjct: 355 V-------LDPGDPGVQ--YVLMPLRV 372


>gi|315497053|ref|YP_004085857.1| DNA polymerase iii, beta subunit [Asticcacaulis excentricus CB 48]
 gi|315415065|gb|ADU11706.1| DNA polymerase III, beta subunit [Asticcacaulis excentricus CB 48]
          Length = 373

 Score =  255 bits (652), Expect = 7e-66,   Method: Compositional matrix adjust.
 Identities = 137/387 (35%), Positives = 223/387 (57%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ER  +L+ LGH   ++ER+NTIP+  +VLL A    +   A+  ++EI  +  A 
Sbjct: 1   MQLIIERGALLKALGHVQNVVERRNTIPILSNVLLSAEGSQVSFSATDLDMEIVDSAEAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G IT  AH LY+IVRKL DGA +    +      + +  G S F L   P  +FP 
Sbjct: 61  VAVPGQITAPAHTLYEIVRKLPDGADVELRYQAGDDPRLTVQAGRSRFALPVLPAGDFPV 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              +    ++ L    LK L+++T FA++TEE RYYLNG+F H   ED    L AVATDG
Sbjct: 121 MSGDHDGTTYALLKEDLKRLIDKTRFAVSTEETRYYLNGLFLHTLTEDGSGYLRAVATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE+           +I+PRK + +  R+L      V++++S ++I  N  + +++
Sbjct: 181 HRLALAEMPAPDGSMGSAGVIIPRKTIDQARRLLDDGTGYVELTVSPAKIRFNFGTAALT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +NDK +R++   L +AVDRVS +S+ + ++VK+++   +L +T
Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKLMRIDTGILSRAVDRVSTISAEKSRSVKMAIEPGRLTLT 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E   + Y+   ++I FN +Y+L+++  I+      ++V  RL+ + S   
Sbjct: 301 VRNIEAGQAVEEAEIDYDSDSLEIGFNARYILDVMGQIAG-----EQVELRLNDAASPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +        +  D  V   YVLMP+R+
Sbjct: 356 V-------LDTADQGVQ--YVLMPLRV 373


>gi|162147556|ref|YP_001602017.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542190|ref|YP_002274419.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786133|emb|CAP55715.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209529867|gb|ACI49804.1| DNA polymerase III, beta subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 374

 Score =  254 bits (650), Expect = 1e-65,   Method: Compositional matrix adjust.
 Identities = 145/399 (36%), Positives = 218/399 (54%), Gaps = 39/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   + E++NTIP+  +VL+   DG L + A+  EI +   I A 
Sbjct: 1   MKLKADRATLLKALAHIQSVAEKRNTIPILANVLINVADGRLTLTATDMEIAVVEEIGAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112
               G++T  A +LY+I RKL DG  I          E++ + GD+   L++        
Sbjct: 61  TSRNGAVTAPAAVLYEIARKLPDGVAI----------ELDHTGGDAPLALRAGRYATSLN 110

Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDL 169
                +FPS       Y F + ++VL+ L++RT FA++TEE RYYLNGI+ H+   +E  
Sbjct: 111 VLDVDDFPSMMAGTLPYHFTMPAAVLRGLIDRTRFAISTEETRYYLNGIYLHVAAGDEGS 170

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            L AVATDGHRLA  E ++     +MP +IVPRK V E+ ++L      V V LS++RI 
Sbjct: 171 MLRAVATDGHRLARVETEVPPGAEEMPGVIVPRKTVAELRKLLDEGTEDVAVGLSDTRIQ 230

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             + +++++ +LIDG FP Y  VIP  NDK LRV   +   AV RV+ +S  R + VKLS
Sbjct: 231 FTVGTVTLTSKLIDGTFPEYDRVIPRGNDKILRVGKRDFSDAVARVAAISQERSRPVKLS 290

Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +  + L ++  +PD G A E ++   V Y+  P++I F  +YL +I D I      D +V
Sbjct: 291 IGHNLLTLSAVSPDQGTAKEELDDNYVTYDSTPLEIGFQARYLNDITDQI------DKDV 344

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F    S++   +R     S         A YVLMPMR+
Sbjct: 345 EFAFSDSSAPTIVRDVASPS---------ALYVLMPMRV 374


>gi|148260438|ref|YP_001234565.1| DNA polymerase III subunit beta [Acidiphilium cryptum JF-5]
 gi|146402119|gb|ABQ30646.1| DNA polymerase III, beta subunit [Acidiphilium cryptum JF-5]
          Length = 374

 Score =  253 bits (646), Expect = 4e-65,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 216/399 (54%), Gaps = 39/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   ++E++NTIP+  +VLL   +G L I A+  EI +   + A+
Sbjct: 1   MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112
               GS+T  A  LY+IVR+  D A+I          E++   GD+   L++        
Sbjct: 61  TMRDGSVTAPAATLYEIVRRQPDNAEI----------ELDHPGGDAPLALRAGRYATKLV 110

Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--L 169
             P  EFP     +  + F + +  L+ L++RT FA++TEE RYYLNGI+ H  E +   
Sbjct: 111 VLPTDEFPKLDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVP 170

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            L AVATDGHRLA  E  +    A MP +IVPRK V EI ++L      V ++LSE+RI 
Sbjct: 171 VLRAVATDGHRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQ 230

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             ++++ M+ +LIDG +P+Y  VIP  NDK LRV   +   AV RVS ++S R + VKLS
Sbjct: 231 FELDTMRMTSKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLS 290

Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +  D L ++  +PD G A E ++   V Y   P++I F  +YL ++ + I        +V
Sbjct: 291 VGRDLLVLSATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KV 344

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F      +   +R    +S         A +VLMPMR+
Sbjct: 345 EFCFADGAAPTLVRAAGDES---------AIFVLMPMRV 374


>gi|326403632|ref|YP_004283714.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301]
 gi|325050494|dbj|BAJ80832.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301]
          Length = 374

 Score =  252 bits (644), Expect = 6e-65,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 216/399 (54%), Gaps = 39/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   ++E++NTIP+  +VLL   +G L I A+  EI +   + A+
Sbjct: 1   MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112
               GS+T  A  LY+IVR+  D A+I          E++   GD+   L++        
Sbjct: 61  TMRDGSVTAPAATLYEIVRRQPDNAEI----------ELDHPGGDAPLALRAGRYATKLV 110

Query: 113 -FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--L 169
             P  EFP     +  + F + +  L+ L++RT FA++TEE RYYLNGI+ H  E +   
Sbjct: 111 VLPTDEFPKLDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHSAESEGVP 170

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            L AVATDGHRLA  E  +    A MP +IVPRK V EI ++L      V ++LSE+RI 
Sbjct: 171 VLRAVATDGHRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQ 230

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             ++++ M+ +LIDG +P+Y  VIP  NDK LRV   +   AV RVS ++S R + VKLS
Sbjct: 231 FELDTMRMTSKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLS 290

Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +  D L ++  +PD G A E ++   V Y   P++I F  +YL ++ + I        +V
Sbjct: 291 VGRDLLVLSATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KV 344

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F      +   +R    +S         A +VLMPMR+
Sbjct: 345 EFCFADGAAPTLVRAAGDES---------AIFVLMPMRV 374


>gi|329891033|ref|ZP_08269376.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846334|gb|EGF95898.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 372

 Score =  252 bits (643), Expect = 8e-65,   Method: Compositional matrix adjust.
 Identities = 140/388 (36%), Positives = 222/388 (57%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS +L  LGH   ++ER+NTIP+  +VLL A    L   A+  ++E+     A 
Sbjct: 1   MQLTIERSALLRALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEMVDEAEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+V G IT  AH LY+IVRKL DGA++S     +    + ++ G S F L   P  +FP 
Sbjct: 61  VNVEGQITAPAHTLYEIVRKLPDGAEVSLTYSGD-DPRLVVAAGRSRFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC-AVATDG 178
              E     + L    L  L+++T FA++TEE RYYLNG++ H + +  + L  AVATDG
Sbjct: 120 MSTEASGARYTLPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVADGGIPLLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE       A  P +IVPRK V ++ R+L      V+V +S  +I       S++
Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDGAGPVEVQVSAQKIRFEFGEASLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  NDK+  ++ +   +AVDRV+ +S+ + ++VKL+  +D++ +T
Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNSLFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSSV 357
           V N + G+A E + + Y++ P +I FN +YLL++   I+      +   F+  D ++ ++
Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ETAHFKFADPASPTL 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D          V   YVLMP+R+
Sbjct: 355 VLDPAD----------VGVQYVLMPLRV 372


>gi|58038493|ref|YP_190457.1| DNA polymerase III subunit beta [Gluconobacter oxydans 621H]
 gi|58000907|gb|AAW59801.1| DNA polymerase III, beta chain [Gluconobacter oxydans 621H]
          Length = 374

 Score =  249 bits (635), Expect = 7e-64,   Method: Compositional matrix adjust.
 Identities = 140/390 (35%), Positives = 217/390 (55%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R+ +   L H   + E++NTIP+  +VL+   D +L + A+  EI +   +PAS
Sbjct: 1   MKFKVDRTLLQRALAHIHGVAEKRNTIPILANVLMSYQDDVLRLTATDMEIAVVEDVPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GS TV A +L++IVRKL DG  + F  ++     + +  G     L   P  +FP+
Sbjct: 61  GERSGSTTVPAAVLFEIVRKLPDGVALEFDHQDS-EAPLALRAGRYATSLNVLPVDDFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               +  + F + ++ L+ L++RT FA++ EE RYYLNGI+ H+ E      L AVATDG
Sbjct: 120 MVAGDLPHRFSIPAATLRGLIDRTKFAISNEETRYYLNGIYLHVAENGSIPMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E ++      MP +I+PRK + E+ ++L    + ++VSLS++RI      + ++
Sbjct: 180 HRLARVETELPEGARGMPGVIIPRKTINELRKLLDEGAADLEVSLSDTRIQFQAGPVLLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP  ND+ LRV   +   AV RV+ +S  R + VKLS++ + L ++
Sbjct: 240 SKLIDGTFPEYERVIPKGNDRILRVGKRDFAAAVGRVAAISQERSRPVKLSVTQNMLNLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             +PD G A E ++   V Y+  P++I F  +YL +I D I      D EV F    S++
Sbjct: 300 ATSPDQGVAHEELDENAVSYDAAPIEIGFQARYLTDITDQI------DVEVEFAFSDSSA 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R     S         A YVLMPMR+
Sbjct: 354 PTIVRDTASPS---------ALYVLMPMRV 374


>gi|197106929|ref|YP_002132306.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1]
 gi|196480349|gb|ACG79877.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1]
          Length = 372

 Score =  248 bits (634), Expect = 8e-64,   Method: Compositional matrix adjust.
 Identities = 136/387 (35%), Positives = 216/387 (55%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L  LGH    +ER+NTIP+  +VLL A    L   A+  ++EI     A 
Sbjct: 1   MKLTIERAALLRALGHVQSAVERRNTIPILSNVLLSAERDRLTFSATDLDMEIIDEAMAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G IT  AH LY+IVRKL +GA +S     E    + +  G S F L   P  +FP 
Sbjct: 61  VDQPGQITAPAHTLYEIVRKLPEGADVSLSFTGE-DPRLAVQAGRSRFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
              E +     +  + L  L+++T FA++ EE RYYLNG++ H  + +   +L AVATDG
Sbjct: 120 MSAEGFSGRMGVDVTDLIRLIDKTRFAISAEETRYYLNGLYLHTIVVDGSPRLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+A++      A  P +IVPRK VGE  R+L      V++ +S  +I    +  +++
Sbjct: 180 SRLALADMPAPEGAAGAPGVIVPRKTVGEARRLLEDAGEQVELQVSPQKIRFEFDGAALT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N++ + V+     QAVDRV+ +S+ + ++V++++ + K+ +T
Sbjct: 240 SKVIDGNFPDYARVIPKDNNRIVMVDAKLFAQAVDRVATISAEKSRSVRMAIEAGKVVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E + + Y+  P ++ FN +YLL+I D IS      ++   R    N    
Sbjct: 300 VRNMEAGQAVEELEIDYDGEPFELSFNARYLLDITDQISG-----EQAELRFGGPNDPAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +        +  D  V   Y+LMP+R+
Sbjct: 355 V-------LDPADADVQ--YILMPLRV 372


>gi|16124411|ref|NP_418975.1| DNA polymerase III subunit beta [Caulobacter crescentus CB15]
 gi|221233094|ref|YP_002515530.1| DNA polymerase III subunit beta [Caulobacter crescentus NA1000]
 gi|239977224|sp|B8GXP6|DPO3B_CAUCN RecName: Full=DNA polymerase III subunit beta
 gi|239977225|sp|P0CAU5|DPO3B_CAUCR RecName: Full=DNA polymerase III subunit beta
 gi|1049324|gb|AAB51448.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15]
 gi|13421269|gb|AAK22143.1| DNA polymerase III, beta subunit [Caulobacter crescentus CB15]
 gi|220962266|gb|ACL93622.1| DNA polymerase III, beta chain [Caulobacter crescentus NA1000]
          Length = 372

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 140/389 (35%), Positives = 225/389 (57%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  ++LL A    L   A+  ++EI     A 
Sbjct: 1   MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +DV G IT  AH LY+IVRKL DGA +S  F  ++    + I  G S F L   P  +FP
Sbjct: 61  IDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDD--PRLVIQAGRSRFNLPVLPAGDFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEE-DLKLCAVATD 177
               +       + ++ L  L+++T FA++TEE RYYLNG++ H +NE  + KL AVATD
Sbjct: 119 VMSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA+AE+        +P +IVPRK + E  R++ S   +V + +S  ++     + ++
Sbjct: 179 GHRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAAL 238

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N K L ++     +AVDRV+ +S+ + ++VKL++   ++ +
Sbjct: 239 TSKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITL 298

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356
           TV N + G+A+E + V Y+  P +I FN +YLL++   I+       +  FR  D ++ +
Sbjct: 299 TVRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAG-----PQAEFRFADPASPT 353

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +   D   K          YVLMP+R+
Sbjct: 354 LVVDPVDPGVK----------YVLMPLRV 372


>gi|254490238|ref|ZP_05103428.1| DNA polymerase III, beta subunit [Methylophaga thiooxidans DMS010]
 gi|224464585|gb|EEF80844.1| DNA polymerase III, beta subunit [Methylophaga thiooxydans DMS010]
          Length = 367

 Score =  248 bits (633), Expect = 1e-63,   Method: Compositional matrix adjust.
 Identities = 137/385 (35%), Positives = 224/385 (58%), Gaps = 18/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV +  I+  L   C I+ER+ T+P+  +VLL+ +   L + ++  E+E+   +P S
Sbjct: 1   MQFTVSQETIVRPLQLVCSIVERRATLPILSNVLLRVHGNQLSMTSTDMELEMIATLPVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G ITVSA    DIVR L   A IS    N    +  +  G S F L + P  +FP 
Sbjct: 61  VEEEGKITVSARKFLDIVRALPGNATISL---NAKDNKAVVKAGKSRFSLSTLPSDDFPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           ++   Y+    L  S LK+L++ T FAMA++++RYYLNG+      E+  L AVATDGHR
Sbjct: 118 SEGANYIDEISLPQSALKSLLDETSFAMASQDVRYYLNGLLLE--REETTLRAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  +     +A+  S+IVPRKA+ E+ R+L+  D  VK++ S  +I + +  +  + +
Sbjct: 176 LAMGSLTTANPVAEKNSVIVPRKAIIELGRLLNETDDDVKLAFSNQQIKVELPDIHFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ V+P   DKE+      L+QA+ R +I+S+ + ++V+++L +D+L  TV 
Sbjct: 236 LIDGQFPNYERVLPLGGDKEVLAERDELKQALSRAAILSNDKHRSVRINLDTDQLKATVT 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +   A E ++V Y   P++I FN  YLL++++ I  ++V   +++F  ++S++ V   
Sbjct: 296 NQEQESAEEEISVDYKGSPLEIAFNNAYLLDLLNAIPDEKV---KILFTDETSSALV--- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                     D K    YV+MPMR+
Sbjct: 350 -------TPADQKFERQYVVMPMRL 367


>gi|296115230|ref|ZP_06833871.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978331|gb|EFG85068.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC
           23769]
          Length = 374

 Score =  248 bits (632), Expect = 2e-63,   Method: Compositional matrix adjust.
 Identities = 143/399 (35%), Positives = 222/399 (55%), Gaps = 39/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   + E++NTIP+  +VL+   DGL+ + A+  EI +   I A 
Sbjct: 1   MKLKADRATLLKALLHIQGVAEKRNTIPILANVLINVTDGLMTMTATDMEIAVVEGISAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS--FPES-- 116
               G++T  A +L DIVR+L DGA +          E++ + GD+   L++  F  S  
Sbjct: 61  TLRDGAVTAPAAVLCDIVRRLPDGAVV----------ELDQAGGDAPLALRAGRFSTSLN 110

Query: 117 -----EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDL 169
                +FPS       + F +AS  L+ L++R+ FA++TEE RYYLNGI+FH+ E  +  
Sbjct: 111 VLDVDDFPSMMAGALPHDFTIASQALRGLIDRSRFAISTEETRYYLNGIYFHVAETPQGP 170

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            L AVATDGHRLA  E D+    A MP +I+PRK V E+ ++L      + ++LS++RI 
Sbjct: 171 MLRAVATDGHRLARVETDLPDGAAGMPGVIIPRKTVNELRKLLEEGPEHIGIALSDTRIQ 230

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             + ++ ++ +LIDG FP Y+ VIP  NDK L V       AV RV+ +S  R + VKL+
Sbjct: 231 FTVGNVILTSKLIDGTFPEYERVIPTGNDKVLHVGKKIFSDAVSRVAAISQERSRPVKLA 290

Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           ++ + L ++  + D G A E ++   V Y+  P++I F  +YL +I D I  +      V
Sbjct: 291 VTQNLLTLSAASQDQGTATEELDDTHVVYDASPIEIGFQARYLNDITDQIEKN------V 344

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F    S++   +R  D+ S         A YVLMPMR+
Sbjct: 345 EFAFSDSSAPTIVRDVDRPS---------ALYVLMPMRV 374


>gi|167644134|ref|YP_001681797.1| DNA polymerase III subunit beta [Caulobacter sp. K31]
 gi|167346564|gb|ABZ69299.1| DNA polymerase III, beta subunit [Caulobacter sp. K31]
          Length = 372

 Score =  241 bits (616), Expect = 1e-61,   Method: Compositional matrix adjust.
 Identities = 137/389 (35%), Positives = 223/389 (57%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  ++LL A+   L   A+  ++EI     A 
Sbjct: 1   MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSADRDTLSFSATDLDMEIIDEGLAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +D+ G IT  AH LY+IVRKL DG+ +S  F  ++    + I  G S F L   P  +FP
Sbjct: 61  IDIPGQITAPAHTLYEIVRKLPDGSDVSLSFSGDD--PRLVIQAGRSRFNLPVLPAGDFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATD 177
               +       + ++ L  L+++T FA++TEE RYYLNG++ H   +  ++KL AVATD
Sbjct: 119 VMSSDGLSGRISVDTNELIRLIDKTRFAISTEETRYYLNGLYLHTVNDGGEVKLRAVATD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA+AE+      A +P IIVPRK + E  R++ S    V + +S  ++       ++
Sbjct: 179 GHRLALAEMAAPEGAAGLPGIIVPRKTIQEARRLMESAGEQVDLQISAQKVRFEFGRAAL 238

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N K L ++     +AVDRV+ +S+ + ++VKL++   ++ +
Sbjct: 239 TSKVIDGAFPDYLRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITL 298

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356
           TV N + G+A+E + V Y+    +I FN +YLL++   I    + +    FR  D ++ +
Sbjct: 299 TVRNMEAGQAVEEVEVDYDGEAFEIGFNARYLLDVCGQIGG-PIAE----FRFADPASPT 353

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +   D   K          YVLMP+R+
Sbjct: 354 LVVDPTDPGVK----------YVLMPLRV 372


>gi|306843604|ref|ZP_07476205.1| DNA polymerase III, beta subunit [Brucella sp. BO1]
 gi|306276295|gb|EFM57995.1| DNA polymerase III, beta subunit [Brucella sp. BO1]
          Length = 275

 Score =  241 bits (614), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 180/289 (62%), Gaps = 16/289 (5%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           +++  G S+F LQ  P+S+FP      + +SF + +  LK L++RT FA++TEE RYYLN
Sbjct: 1   MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLN 60

Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           GIFFH  E D  LKL AVATDGHRLA AE++  +    MP II+PRK V E+ +++   D
Sbjct: 61  GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             V V LS+++I   + S+ ++ +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS
Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVS 180

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
            +SS R +AVKLS++  +L +TV+NPD G A + +   Y+  P+DI FN KYLL+I   +
Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQL 240

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S       + VF L  + S   +R       +  D  V   YVLMPMR+
Sbjct: 241 SG-----TDAVFMLADAGSPTLVR-------DTGDEDV--LYVLMPMRV 275


>gi|56459114|ref|YP_154395.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR]
 gi|56178124|gb|AAV80846.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR]
          Length = 367

 Score =  240 bits (613), Expect = 2e-61,   Method: Compositional matrix adjust.
 Identities = 137/386 (35%), Positives = 220/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK ++ R   L+ L      +ER++T+P+  ++LLQ ++G L++  +  E+E+  A+P  
Sbjct: 1   MKFSINRDAFLKPLQVVSGAVERRHTLPILSNLLLQVDNGQLKLTGTDLEVELVSAVPLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D+  ++TV A  L DIVR L +G+ I F  + +  T   +  G S F L +    +FP
Sbjct: 61  SADMDAAVTVPAKKLLDIVRSLPEGSTIEFTSQEDSAT---VKSGRSKFKLSTLSSDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +         +VLK+L+ +THF+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIDDWKSDIHLVTEQAVLKDLMLKTHFSMANQDVRYYLNGMLFETDNGMLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I         +IVPRK V E+LR+L   D  V VS+  + I +    L  + 
Sbjct: 176 RLAMSTCAIDQPGLAQRQVIVPRKGVVELLRLLGDDDQEVSVSIGNNHIRVETPELVFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   LRQ+  R SI+S+ + + V+L+LSS +LC+T 
Sbjct: 236 KLVDGRFPDYRRVLPSGGDKVIVAHRDALRQSFGRASILSNEKFRGVRLNLSSGELCITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A E + V Y    ++I FN  YLL++++NI      D++V F L  SNSS  I
Sbjct: 296 TNPEQEQAEEVIEVDYQGDDLEIGFNVSYLLDVLNNID-----DEQVSFTLSDSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  +S           YV+MPMR+
Sbjct: 351 EPQHDES---------CCYVIMPMRL 367


>gi|306842703|ref|ZP_07475346.1| DNA polymerase III, beta subunit [Brucella sp. BO2]
 gi|306287149|gb|EFM58651.1| DNA polymerase III, beta subunit [Brucella sp. BO2]
          Length = 275

 Score =  240 bits (612), Expect = 3e-61,   Method: Compositional matrix adjust.
 Identities = 126/289 (43%), Positives = 179/289 (61%), Gaps = 16/289 (5%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           +++  G S+F LQ  P+S+FP      + +SF + +  LK L++RT FA++TEE RYYLN
Sbjct: 1   MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLN 60

Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           GIFFH  E D  LKL AVATDGHRLA AE++  +    MP II+PRK V E+ +++   D
Sbjct: 61  GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             V V LS+++I   + S+ ++ +LIDG FP+YQ VIP  NDK+L ++      +VDRVS
Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQGFAASVDRVS 180

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
            +SS R +AVKLS++  +L +TV+NPD G A + +   Y+  P+DI FN KYLL+I   +
Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITSQL 240

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S       + VF L  + S   +R       +  D  V   YVLMPMR+
Sbjct: 241 SG-----TDAVFMLADAGSPTLVR-------DTGDEDV--LYVLMPMRV 275


>gi|284007064|emb|CBA72339.1| DNA polymerase III subunit beta [Arsenophonus nasoniae]
          Length = 366

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK T+ER  +L+ L      +  + T+P+  ++LLQ ++ +L +  +  E+E+   +   
Sbjct: 1   MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSENILSLTGTDLEVEMVAKVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITV A   +DI R L DGA+I    E   G  + +  G S F L + P ++FP
Sbjct: 61  QPGESGSITVPARKFFDIWRGLPDGAEIKVTLE---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + LK L+E T F+MA +++RYYLNG+ F    ++L+   VATDGH
Sbjct: 118 NLDDWQSEVEFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGQELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  ++I   +    S+IVPRK V E +R+L S D S+K+ +  + I  ++     + 
Sbjct: 176 RLAVCSLNIDKDLPTH-SVIVPRKGVVEFMRLLDSSDESLKLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLTADCDKLKQAFSRAAILSNEKFRGVRLYISENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  ++ E ++V Y    ++I FN  Y+L++++ +       ++V   L  SNSSV I
Sbjct: 295 NNPEQEESEEIVDVNYQSPMIEIGFNVSYILDVLNTLKC-----EQVNLLLTDSNSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+  N      A YV+MPMR+
Sbjct: 350 ----EDAATNA-----AAYVVMPMRL 366


>gi|88860615|ref|ZP_01135252.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2]
 gi|88817210|gb|EAR27028.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2]
          Length = 368

 Score =  233 bits (594), Expect = 4e-59,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 224/386 (58%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL+  DG L +  +  EIE+   +  S
Sbjct: 2   MQITIPRDQFLKPLIQVSGAIERKHTLPILSNVLLEIADGKLMMTGTDLEIELVACVTLS 61

Query: 61  VDVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             V  S +T+ A  L DI + L DG++I+   ++   ++V ++ G S F L S P  +FP
Sbjct: 62  HFVEDSKLTLPAKKLLDICKSLPDGSEITLSAQD---SQVLLTSGKSRFSLASLPALDFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F++  + L+ L+E THF+MA +++RYYLNG+ F ++  ++K   VATDGH
Sbjct: 119 NLEQWDGEVDFQITRNELRKLLESTHFSMANQDVRYYLNGMSFEVDNSEIK--TVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+++  +   +     +I+PRK V EI+R++ S D+ V +    +   +  +  + + 
Sbjct: 177 RLALSQKKLDYSLNTQRQLIIPRKGVQEIMRLMVSDDNLVTIQFGANHFRIIDQEFTFTS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+ S+ +L +T 
Sbjct: 237 KLVDGRFPDYRRVLPRGGDKVVTANREWLRSAFSRVSILSNEKFRGVRLNFSAGELKITA 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y+   ++I FN  Y+L++++ + +     ++V F L  SNSS  +
Sbjct: 297 NNPEQEQAEEIVEVVYSGPDLEIGFNVSYVLDVLNTLKT-----EDVSFTLSDSNSSALV 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   D          A YV+MPMR+
Sbjct: 352 EGTGDD---------EAMYVVMPMRL 368


>gi|85711020|ref|ZP_01042081.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145]
 gi|85695424|gb|EAQ33361.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145]
          Length = 367

 Score =  233 bits (593), Expect = 5e-59,   Method: Compositional matrix adjust.
 Identities = 136/386 (35%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TV R   L+ L      +ER++T+P+  ++LL+     L +  +  E+E+  ++   
Sbjct: 1   MKFTVSRDAFLKPLQIVSGAVERRHTLPILSNLLLKVEGDTLRLTGTDLEVELISSVKVE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S    G +TV A  L DIVR L D + I    ++E    V +  G S F L S    +FP
Sbjct: 61  SSGGDGMVTVPAKKLLDIVRSLPDESPIELVGDDE---GVRVRSGRSKFKLSSLSADDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++     +F  +   LK L+E+THF+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIEDWSSEVNFITSQDTLKRLMEKTHFSMANQDVRYYLNGMLFETDANMLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I         +IVPRK V E+LR+L+  DS V V++  + I +    +  + 
Sbjct: 176 RLAMSNCHIEQPGLSQRQVIVPRKGVVELLRLLNEDDSEVAVAIGNNHIRVETADIVFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK++  +   LRQA  R SI+S+ + + V+L++++ +LC+T 
Sbjct: 236 KLVDGRFPDYRRVVPQGGDKQIFADRDLLRQAFGRASILSNEKFRGVRLNITAGELCITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A E + V Y    ++I FN  YLL++++NI +     +EV F L  +NSS  I
Sbjct: 296 TNPEQEQAEEVIEVNYEGEAIEIGFNVSYLLDVLNNIEA-----EEVCFVLSDANSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             KD DS           YV+MPMR+
Sbjct: 351 EPKDDDS---------CCYVVMPMRL 367


>gi|194363780|ref|YP_002026390.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194346584|gb|ACF49707.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 366

 Score =  232 bits (592), Expect = 6e-59,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  + L+Q  +G L +  +  E+E+   I   
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L++I+R L DG++I+    ++ G ++ +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFEIIRALPDGSRITV---SQTGDKITVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F +  + L+   VATDGHR
Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E D+         IIVPRK V E+ R+L S D  +++ +  S + +  + ++ + +
Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++VN  +LR ++ R +I+S+ + + +++ +S   L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVNRESLRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+EV+ +L  SNSS  +R
Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +S + K       +V+MP+R+
Sbjct: 351 ----ESSSEKSR-----HVVMPLRL 366


>gi|190572093|ref|YP_001969938.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia
           K279a]
 gi|254521676|ref|ZP_05133731.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14]
 gi|190010015|emb|CAQ43620.1| putative DNA polymerase III beta subunit [Stenotrophomonas
           maltophilia K279a]
 gi|219719267|gb|EED37792.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 366

 Score =  230 bits (586), Expect = 3e-58,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 216/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  + L+Q  +G L +  +  E+E+   I   
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L++I+R L DG++I+    ++ G ++ +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFEIIRALPDGSRITV---SQTGDKITVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F +  + L+   VATDGHR
Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E D+         IIVPRK V E+ R+L S D  +++ +  S + +  + ++ + +
Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + +++ +S   L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+EV+ +L  SNSS  +R
Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +S + K       +V+MP+R+
Sbjct: 351 ----ESSSEKSR-----HVVMPLRL 366


>gi|120552946|ref|YP_957297.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8]
 gi|120322795|gb|ABM17110.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8]
          Length = 367

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 218/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  ++  L     ++E+K T+PV  +VLL+A D  L +  +  E+E+   + P 
Sbjct: 1   MKLTISRESLITPLQSIAGVVEKKQTMPVLSNVLLEAEDNTLTLTGTNMEVELVARVAPV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G ITV A  L DI R L D A I    E   G  +++  G+S+F L + P   FP
Sbjct: 61  HVDQPGRITVPARKLADICRALGDEAPIDLALE---GDRLHLRSGNSHFTLSTLPAEHFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++E   +   L    L  +++ T FAMA +++RYYLNG+   ++    ++  VATDGH
Sbjct: 118 NVEDEPESFRLALPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDVNHARV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A++D+     ++  +IVPRK V E+ R+L  ++S V + + ++ +   + S + + 
Sbjct: 176 RLAMAQLDLDTGCPELRQVIVPRKGVLELARLLDDEESPVTLVIGDNHLRATVGSYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  VIP   DK +  + + L+  + R  I+S   I+ V+L+LS ++L +  
Sbjct: 236 KLIEGKFPDYNRVIPRGGDKTVLADRSTLKSTLQRAGILSHENIRGVRLNLSPNQLQVFA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +++ V Y    + I FN  YL+++++ +      DD+V   L + NSS  I
Sbjct: 296 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----DDQVKITLSNPNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++       DN+    YV+MPMR+
Sbjct: 351 EAQN-------DNR--CLYVVMPMRL 367


>gi|37524034|ref|NP_927378.1| DNA polymerase III subunit beta [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783457|emb|CAE12297.1| DNA polymerase III, beta chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 366

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 135/387 (34%), Positives = 220/387 (56%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMMARVTLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
           +    G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+F
Sbjct: 61  LPHEVGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDG
Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     +
Sbjct: 175 HRLAVCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T
Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L  + SSV 
Sbjct: 294 ANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQ 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    +D  N+     NA YV+MPMR+
Sbjct: 349 I----EDCANH-----NAAYVVMPMRL 366


>gi|319785622|ref|YP_004145097.1| DNA polymerase III subunit beta [Pseudoxanthomonas suwonensis 11-1]
 gi|317464134|gb|ADV25866.1| DNA polymerase III, beta subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 366

 Score =  229 bits (585), Expect = 4e-58,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 216/387 (55%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R  +L+ L     ++ER+ T+PV  + L+Q  DG L +  +  E+E+       
Sbjct: 1   MRFTLQREALLKPLAQVVNVVERRQTLPVLANFLVQVQDGQLSLTGTDLEVEMIARAAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
             V G IT+ A  L++IVR L DG++++    +  G +V +  G S F L + P ++FPS
Sbjct: 61  DAVDGEITIPARKLFEIVRALPDGSRVTI---SLAGDKVTVQAGRSRFSLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + ++ L+ C VATDGHR
Sbjct: 118 VDEVEATERITVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDQSLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E  +   +     IIVPRK V E+ R+L   D S+++ +  S I +  + +S + +
Sbjct: 176 LALCEAPLEQPVGTKRQIIVPRKGVTELQRLLEGGDRSLELEVGRSHIRVKRDDVSFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   +KE+RV+   +R A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGRFPDYEAVIPIGAEKEVRVDREVIRAALQRAAILSNEKYRGVRVEISPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ +V  L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEAETKVDGLAIGFNVNYLLDALGALR-----DEHIVIALRDANSSALVR 350

Query: 361 --GKDKDSKNNKDNKVNAFYVLMPMRI 385
             G DK             +V+MP+R+
Sbjct: 351 EAGSDK-----------CRHVVMPLRL 366


>gi|320539855|ref|ZP_08039514.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson]
 gi|320030041|gb|EFW12061.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson]
          Length = 366

 Score =  227 bits (579), Expect = 2e-57,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQA +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQAMEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   ENE    + +  G S F L + P ++FP
Sbjct: 61  QTHEAGATTVPARKFFDICRGLPEGAEIAVTLENE---RILVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   +ATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E+LR+L S D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGQQLPSH-SVIVPRKGVMELLRLLDSGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKILEAGCDLLKQAFARAAILSNEKFRGVRLYASHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ + S+ V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKSENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDGVSQ-------AAAYVVMPMRL 366


>gi|156972778|ref|YP_001443685.1| DNA polymerase III subunit beta [Vibrio harveyi ATCC BAA-1116]
 gi|156524372|gb|ABU69458.1| hypothetical protein VIBHAR_00443 [Vibrio harveyi ATCC BAA-1116]
          Length = 366

 Score =  226 bits (577), Expect = 3e-57,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  S L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       D V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|254447344|ref|ZP_05060810.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015]
 gi|198262687|gb|EDY86966.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015]
          Length = 366

 Score =  226 bits (577), Expect = 4e-57,   Method: Compositional matrix adjust.
 Identities = 131/385 (34%), Positives = 218/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R  +L  L      +ERKNT+P   +VL++A  G +++ A+  EIE+       
Sbjct: 1   MKLHLSRESLLTPLQKVIGAVERKNTMPALGNVLIKAQGGEIQMTATDLEIELLAKSVLP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G IT+ A  L DI + L DGA I+   + E  T   +S G S F L + P ++FP 
Sbjct: 61  VDQEGDITLPARKLLDICKNLPDGADITLQVDAERAT---LSSGRSRFKLSTLPAADFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  + V  F L  S L+ ++++T FAMA +++RYYLNG+   ++   ++  AVATDGHR
Sbjct: 118 LEAVQGVTQFTLPQSTLRKVIDKTSFAMAQQDVRYYLNGLMLELDGSTVR--AVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E D    I     +I+PRK V E+ R+L  ++   +VSLS + I +++ +L  + +
Sbjct: 176 LALCETDAGLDIGDKKQVIIPRKGVQELSRLLDDEERDAEVSLSNNHIQVDLGNLRFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+YQ V+P + DK +  +  +L+ A+ R S++S+ + + V+L   +  L +  +
Sbjct: 236 LIDGRFPDYQRVMPANCDKVVSADKQDLKLALTRTSVLSNEKYKGVRLVADNGALTIQTN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + V Y    M+I FN  Y+L++++N++     ++ V   L  +NSS  + 
Sbjct: 296 NPEQEEAEEQLEVQYQGENMEIGFNVNYMLDVLNNLT-----EELVTIALKDANSSCLVE 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +  +  A YV+MPMR+
Sbjct: 351 ---------EVGEQTAKYVIMPMRL 366


>gi|271498580|ref|YP_003331605.1| DNA polymerase III subunit beta [Dickeya dadantii Ech586]
 gi|270342135|gb|ACZ74900.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech586]
          Length = 366

 Score =  226 bits (576), Expect = 5e-57,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+IS   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  +EV       R+  ++S   +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEEV-------RMLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QLEDAASQ-------AAAYVVMPMRL 366


>gi|323493782|ref|ZP_08098900.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546]
 gi|323311916|gb|EGA65062.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546]
          Length = 366

 Score =  226 bits (575), Expect = 6e-57,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D + I+F  +   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDSVITFVLD---GDRVQVRSGRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++V + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQVQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S  K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|260774982|ref|ZP_05883882.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609072|gb|EEX35231.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 366

 Score =  225 bits (574), Expect = 7e-57,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERNHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNMLSMTATDLEVELISRVALE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GS+TV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++V + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQVQLGADFAQQ-QIIVPRKGVLELVKLLDAPEQPVTLQIGSSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQTTTKTLEAECDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASAMI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D          A YV+MP+R+
Sbjct: 350 ENVDDDG---------AMYVVMPIRL 366


>gi|121587274|ref|ZP_01677047.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80]
 gi|261213262|ref|ZP_05927544.1| DNA polymerase III beta subunit [Vibrio sp. RC341]
 gi|121548520|gb|EAX58576.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80]
 gi|260837536|gb|EEX64239.1| DNA polymerase III beta subunit [Vibrio sp. RC341]
          Length = 366

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  D  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEDNQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|332533699|ref|ZP_08409558.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036863|gb|EGI73324.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 367

 Score =  225 bits (574), Expect = 8e-57,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 219/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+   +   
Sbjct: 1   MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60

Query: 61  VDVCGS-ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            D+  + +T+ A  L DI + L DG+ I+   +E++L     ++ G S F L +    +F
Sbjct: 61  DDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEHQL----LLTSGKSRFSLTTLSADDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDG
Sbjct: 117 PNLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+A+  +   +     +I+PRK V EI+R++ + D  V +    + I +     + +
Sbjct: 175 HRLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T
Sbjct: 235 SKLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V+F L  SNSS  
Sbjct: 295 ANNPEQEQAEEVVEVSYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I G   +          A YV+MPMR+
Sbjct: 350 IEGAGDEE---------AMYVVMPMRL 367


>gi|307133246|ref|YP_003885262.1| DNA polymerase III, subunit beta [Dickeya dadantii 3937]
 gi|306530775|gb|ADN00706.1| DNA polymerase III, beta subunit [Dickeya dadantii 3937]
          Length = 366

 Score =  225 bits (574), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+IS   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F  + E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDAASQ-------AAAYVVMPMRL 366


>gi|114319168|ref|YP_740851.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225562|gb|ABI55361.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1]
          Length = 366

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 210/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R D+L+ L     ++ER+ T+PV  +V L+  DGL  + A+  E+E+  ++P  
Sbjct: 1   MRIDIQREDLLKPLQAIIGVVERRQTLPVLANVRLELGDGLARLTATDLEVELVASLPCQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G IT+ A  L DI R L D +QI    + E     ++  G S F L +    ++PS
Sbjct: 61  VTEGGDITLPARKLLDICRNLPDQSQIQLQVDGE---RASLRAGRSRFTLATLSADDYPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++     +  L    L+ L+ERTHF+MA +++RYYLNG+   +     ++  VATDGHR
Sbjct: 118 IEDIGARETVRLPQGQLRKLIERTHFSMAVQDVRYYLNGLMVELEPAMARM--VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AE  I   +     +IVPRK V E+LR+L   D    + L ++ I + +  +  + +
Sbjct: 176 LALAEQAIDTGVEAPRQVIVPRKGVQELLRLLDHSDEGADLELGDNHIRVKLGDVRFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ V+P + +    VN  +LR A+ RVSI+S+ + + V+  L    L +   
Sbjct: 236 LIDGRFPDYRRVVPEATETPATVNREDLRHALLRVSILSNEKYRGVRFLLDGGTLKVASH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E ++V Y   P+++ FN  Y+L+ +  +      D++V   L  S SS  I+
Sbjct: 296 NPEQEEAEEEVSVDYGGAPLEVGFNAGYVLDALGALD-----DEDVRLTLRDSASSGLIQ 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G D  +           YV+MPMR+
Sbjct: 351 GVDDQTSR---------YVVMPMRL 366


>gi|251787654|ref|YP_003002375.1| DNA polymerase III subunit beta [Dickeya zeae Ech1591]
 gi|247536275|gb|ACT04896.1| DNA polymerase III, beta subunit [Dickeya zeae Ech1591]
          Length = 366

 Score =  225 bits (573), Expect = 9e-57,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  +EV       R+  ++S   +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEEV-------RMLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QLEDAASQ-------AAAYVVMPMRL 366


>gi|268593489|ref|ZP_06127710.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131]
 gi|291310911|gb|EFE51364.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131]
          Length = 366

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +L+ L      +  + T+P+  ++LLQ  +G L++  +  E+E+   +  +
Sbjct: 1   MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGTLQLTGTDLEMEMMANVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I     ++    + +  G S F L + P ++FP
Sbjct: 61  GEHEIGATTVPARKFFDIWRGLPEGSEIHVELNDD---RLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    ED  L  V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFET--EDQMLRTVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMDI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S     + V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYILDVLNALKS-----ENVQLLLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D DSK        A YV+MPMR+
Sbjct: 350 --EDADSK-------AAVYVVMPMRL 366


>gi|292490135|ref|YP_003533030.1| DNA polymerase III subunit beta [Erwinia amylovora CFBP1430]
 gi|292901139|ref|YP_003540508.1| DNA polymerase III subunit beta [Erwinia amylovora ATCC 49946]
 gi|291200987|emb|CBJ48126.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC 49946]
 gi|291555577|emb|CBA24171.1| DNA polymerase III, beta-subunit [Erwinia amylovora CFBP1430]
 gi|312174328|emb|CBX82581.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 366

 Score =  225 bits (573), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 1   MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALA 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P S+FP
Sbjct: 61  QDHQPGATTVPARKFFDICRGLPEGAEIAVILEGE---RMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L + DS ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELVRLLDAGDSLLQVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366


>gi|269962692|ref|ZP_06177037.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3]
 gi|269832615|gb|EEZ86729.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3]
          Length = 366

 Score =  224 bits (572), Expect = 1e-56,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVALE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  S L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S  K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       D V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|311696594|gb|ADP99467.1| DNA polymerase III, beta chain [marine bacterium HP15]
          Length = 367

 Score =  224 bits (572), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 218/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  +L  L     ++E+K T+PV  +VLL A D  L +  +  E+E+   + P 
Sbjct: 1   MKLTISRESLLTPLQSIAGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARVTPV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G ITV A  L DI R L D A +    E   G  +++  G S+F L + P   FP
Sbjct: 61  HVDQPGRITVPARKLSDISRALGDEAPMELSLE---GDRLHLRCGASHFTLSTLPAEHFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++E+  +  EL    L  +++ T FAMA +++RYYLNG+   ++++ ++   VATDGH
Sbjct: 118 NVEDEDESFRLELPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A +++     ++  +IVPRK V E+ R+L   ++ V + + ++ +   + S + + 
Sbjct: 176 RLAMAHLELATNCPELRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  VIP   DK +  +   L+  + R  I+S   I+ V+L+L+S++L +  
Sbjct: 236 KLIEGKFPDYNRVIPRGGDKIVLADRATLKNTLQRAGILSHENIRGVRLNLASNELQVFA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +++ V Y    + I FN  YL+++++ +      +D+V   L + NSS  I
Sbjct: 296 NNPDQEQAEDALPVDYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLSNPNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++       DN+    YV+MPMR+
Sbjct: 351 EAQN-------DNR--CLYVVMPMRL 367


>gi|326793324|ref|YP_004311144.1| DNA polymerase III subunit beta [Marinomonas mediterranea MMB-1]
 gi|326544088|gb|ADZ89308.1| DNA polymerase III, beta subunit [Marinomonas mediterranea MMB-1]
          Length = 365

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 142/389 (36%), Positives = 221/389 (56%), Gaps = 28/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L+ L     ++ERK T+PV  +VL++  D +L +  S  E+E+ G +P  
Sbjct: 1   MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQVLTLTGSDLEVELVGQVP-- 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +D C  G ITV A  L DI + L D A I F  + +   +  I  G S F L + P  EF
Sbjct: 59  LDDCQEGRITVPARKLVDICKSLPDSAVIEFSLDEQ---KAIIRSGRSRFSLSTLPADEF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +   +  +A S ++ L++RT FAMA +++RYYLNG+ F +   D +L  VATDG
Sbjct: 116 PNIQDMQGDLTVNVAQSSVRRLIDRTGFAMANQDVRYYLNGMLFEV--ADGQLRVVATDG 173

Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRLA A  D  AQ++  +  +IVPRK V E+ R+LS  D  V++ +  + +   I+  + 
Sbjct: 174 HRLATAIED--AQVSGDLTQVIVPRKGVLELNRLLSDTDELVELKIGSNHVRATIDDYTF 231

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG+FP+Y  VIP +N+K +  +   LRQ   R SI+S+ + + V+L LS+  L +
Sbjct: 232 TSKLVDGKFPDYHRVIPRNNEKMVIADRQELRQVFLRASILSNEKYRGVRLILSNGMLQV 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSS 356
             +NP+  +A ES+ V Y    M++ FN  YLL+++       VVD  EV   ++ SNSS
Sbjct: 292 FANNPEQEEAEESVLVQYQGDGMEVGFNVGYLLDVLG------VVDAQEVRIAMNDSNSS 345

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I      +         A YV+MPMR+
Sbjct: 346 ALIEEAQSHA---------AQYVVMPMRL 365


>gi|157368282|ref|YP_001476271.1| DNA polymerase III subunit beta [Serratia proteamaculans 568]
 gi|157320046|gb|ABV39143.1| DNA polymerase III, beta subunit [Serratia proteamaculans 568]
          Length = 366

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   E E    + +  G S F L + P  +FP
Sbjct: 61  QPHEAGATTVPARKLFDICRGLPEGAEITVTLEGE---RMLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGQQLPSH-SVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  SK       +A YV+MPMR+
Sbjct: 348 QIEDGASK-------SAAYVVMPMRL 366


>gi|110832863|ref|YP_691722.1| DNA polymerase III subunit beta [Alcanivorax borkumensis SK2]
 gi|110645974|emb|CAL15450.1| DNA polymerase III, beta subunit [Alcanivorax borkumensis SK2]
          Length = 366

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 221/388 (56%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +L+ L     ++E++ T+PV  +VLL+  DG L +  +  E+E+   +P  
Sbjct: 1   MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G  TV A  L DI + L   A I F  + E    + +  G S F L + P SEFP
Sbjct: 61  GELEPGETTVPARKLVDIGKSLPAEADIRFEVDGE---RMLVRSGRSRFTLSTLPASEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E+    S E+   VL+ L++RT F+MA +++RYYLNG+ F +    L+  AVATDGH
Sbjct: 118 NLEEDAAGSSLEIKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKSGRLR--AVATDGH 175

Query: 180 RLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+  AE+D+  + A   S+I+PRK V E+ RIL       ++++  + + + + +++ 
Sbjct: 176 RLALCDAELDVPVEEA---SVILPRKGVMELSRILGDSGEVARLTIGRNHVRIVVGAITF 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG+FP Y  VIP    +++  +   LRQA+ RV+I+S+ + + V++ LS   L +
Sbjct: 233 TSKLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +NP+  +A E ++V +N  P++I FN  YLL++++ +        +    +  SNSS 
Sbjct: 293 VANNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGG-----TQAELEMGDSNSSA 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D +SK        A YV+MPMR+
Sbjct: 348 LV--FDPESK-------AAVYVVMPMRL 366


>gi|119471659|ref|ZP_01614044.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
           polymerase III [Alteromonadales bacterium TW-7]
 gi|119445438|gb|EAW26725.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
           polymerase III [Alteromonadales bacterium TW-7]
          Length = 367

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 218/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+   +   
Sbjct: 1   MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60

Query: 61  VDVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  + +T+ A  L DI + L +G+ I+   ++    ++ ++ G S F L +   ++FP
Sbjct: 61  DDIADTKLTLPAKKLLDICKSLPEGSDITLSLQDH---QLLLTSGKSRFSLTTLSAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDGH
Sbjct: 118 NLEEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +   +     +I+PRK V EI+R++ + D  V +    + I +     + + 
Sbjct: 176 RLAIAQKKLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKTIIANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V F L  SNSS  I
Sbjct: 296 NNPEQEQAEEVVEVNYQGDELEIGFNVSYVLDVLNTLKT-----EDVQFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   D          A YV+MPMR+
Sbjct: 351 EGAGDDE---------AMYVVMPMRL 367


>gi|229524914|ref|ZP_04414319.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229338495|gb|EEO03512.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 366

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D+V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----DQVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|21229480|ref|NP_635397.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766354|ref|YP_241116.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989398|ref|YP_001901408.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21110940|gb|AAM39321.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571686|gb|AAY47096.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731158|emb|CAP49330.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris]
          Length = 366

 Score =  224 bits (571), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/385 (33%), Positives = 220/385 (57%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q N+G L +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTV---SQTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    +    IIVPRK V E+LR+L + D  V++ L  S I +    ++ + +
Sbjct: 176 LALCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|323496928|ref|ZP_08101956.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326]
 gi|323318002|gb|EGA70985.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326]
          Length = 366

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GS+TV +    DI R L D + I+F  E   G  V +  G S F L + P S+FP
Sbjct: 61  GEFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEISLSQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNLRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLETGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++  P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|262392782|ref|YP_003284636.1| DNA polymerase III subunit beta [Vibrio sp. Ex25]
 gi|262336376|gb|ACY50171.1| DNA polymerase III beta subunit [Vibrio sp. Ex25]
          Length = 366

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + + + + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|149375635|ref|ZP_01893404.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893]
 gi|149360037|gb|EDM48492.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893]
          Length = 371

 Score =  224 bits (570), Expect = 2e-56,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  +L  L     ++ERK T+PV  +VLL A D  L +  +  E+E+ G + P 
Sbjct: 5   MKLTISRESLLTPLQSIAGVVERKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVGRVSPV 64

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G ITV A  L DI R L D A I    E   G  +++  G S+F L + P   FP
Sbjct: 65  HVDQPGRITVPARKLSDICRALGDEAPIELALE---GDRLHLRCGASHFTLSTLPAEHFP 121

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +++   +  EL    L  + + T FAMA +++RYYLNG+   ++++ ++   VATDGH
Sbjct: 122 NVEDDAESFGLELPQKELSRMFDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 179

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A  D+     +   +IVPRK V E+ R+L   ++ V + + ++ +   + S + + 
Sbjct: 180 RLAMAHFDLPTGCPEPRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 239

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  VIP   DK +  +   L+  + R  I+S   I+ V+L+L+ ++L +  
Sbjct: 240 KLIEGKFPDYNRVIPRGGDKVVLADRATLKNTLQRAGILSHENIRGVRLNLAPNELQVFA 299

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +++ V Y    + I FN  YL+++++ +      +D+V   L + NSS  I
Sbjct: 300 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLANPNSSALI 354

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++       DN+    YV+MPMR+
Sbjct: 355 EAEN-------DNR--CLYVVMPMRL 371


>gi|322830735|ref|YP_004210762.1| DNA polymerase III, subunit beta [Rahnella sp. Y9602]
 gi|321165936|gb|ADW71635.1| DNA polymerase III, beta subunit [Rahnella sp. Y9602]
          Length = 366

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTDGALSLTGTDLEMEMVAKVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEISVALD---GDRMLVKSGRSRFSLSTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+++++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTTLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+  C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLQAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVGYEGTEMEIGFNVSYVLDVLNALKC-----EDVNLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|269965277|ref|ZP_06179398.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B]
 gi|269830078|gb|EEZ84306.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B]
          Length = 366

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + + + + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|254428026|ref|ZP_05041733.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881]
 gi|196194195|gb|EDX89154.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881]
          Length = 366

 Score =  224 bits (570), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +L+ L     ++E++ T+PV  +VLL+  DG L +  +  E+E+   +P  
Sbjct: 1   MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI + L   A I F  + E    + +  G S F L + P SEFP
Sbjct: 61  GEQEPGETTVPARKLVDIAKSLPAEADIRFEVDGE---RMLVRSGRSRFTLSTLPASEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E+      E+   VL+ L++RT F+MA +++RYYLNG+ F +    L+  AVATDGH
Sbjct: 118 NLEEDAAGSRLEMKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKPGRLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + ++ A + +  S+I+PRK V E+ RIL     + ++++  + + + + +++ + 
Sbjct: 176 RLALCDAELDAPVEEA-SVILPRKGVMELSRILGDSGEAARLTIGRNHVRIVVGAITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y  VIP    +++  +   LRQA+ RV+I+S+ + + V++ LS   L +  
Sbjct: 235 KLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRIVA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +N  P++I FN  YLL++++ +        +    +  SNSS  +
Sbjct: 295 NNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGG-----TQAELEMGDSNSSALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D +SK        A YV+MPMR+
Sbjct: 350 --FDPESK-------AAVYVVMPMRL 366


>gi|153802490|ref|ZP_01957076.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3]
 gi|229530201|ref|ZP_04419590.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)]
 gi|262402081|ref|ZP_06078645.1| DNA polymerase III beta subunit [Vibrio sp. RC586]
 gi|124121960|gb|EAY40703.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3]
 gi|229332334|gb|EEN97821.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)]
 gi|262351727|gb|EEZ00859.1| DNA polymerase III beta subunit [Vibrio sp. RC586]
 gi|327482926|gb|AEA77333.1| DNA polymerase III beta subunit [Vibrio cholerae LMA3894-4]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|259910294|ref|YP_002650650.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|224965916|emb|CAX57449.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|283480418|emb|CAY76334.1| DNA polymerase III, beta-subunit [Erwinia pyrifoliae DSM 12163]
 gi|310765873|gb|ADP10823.1| DNA polymerase III subunit beta [Erwinia sp. Ejp617]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 1   MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P S+FP
Sbjct: 61  HDHQPGATTVPARKFFDICRGLPEGAEIAVILEGE---RMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELVRLLDGGDSLLQIQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366


>gi|156936081|ref|YP_001439997.1| DNA polymerase III subunit beta [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534335|gb|ABU79161.1| hypothetical protein ESA_03975 [Cronobacter sakazakii ATCC BAA-894]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +S G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    EDL+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMP-VGQPLPNHSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+ ++     +A YV+MPMR+
Sbjct: 350 ----EDAASS-----SAAYVVMPMRL 366


>gi|260595831|ref|YP_003208402.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032]
 gi|260215008|emb|CBA26670.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +S G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    EDL+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQPLPNHSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+ ++     +A YV+MPMR+
Sbjct: 350 ----EDAASS-----SAAYVVMPMRL 366


>gi|28896786|ref|NP_796391.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363485|ref|ZP_05776318.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030]
 gi|260876544|ref|ZP_05888899.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034]
 gi|260901415|ref|ZP_05909810.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037]
 gi|28804994|dbj|BAC58275.1| DNA polymerase III, beta chain [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308090394|gb|EFO40089.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034]
 gi|308107195|gb|EFO44735.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113560|gb|EFO51100.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030]
 gi|328471239|gb|EGF42141.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus 10329]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRC-----EKVQVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|315178625|gb|ADT85539.1| DNA polymerase III, beta chain [Vibrio furnissii NCTC 11218]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS  ++ L      +  + T+P+  ++LL+  D  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A    DI R L D A I+   E   G  V +  G S F L + P S+FP
Sbjct: 61  GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++ ++ A  A    IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDALEQPVVLQIGSSNLRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + +K L+  C  LRQA  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       D V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|317494668|ref|ZP_07953080.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917270|gb|EFV38617.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 366

 Score =  223 bits (569), Expect = 3e-56,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +P A
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLLLTGTDLEMEMIARVPLA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L DGA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QEHETGATTVPARKFFDICRGLPDGAEITVVLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKKLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+ R+L   ++ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSVPSHSVIVPRKGVMELSRLLDGGETPLRLQIGSNNIRAHVGGFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+  C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKAGCDELKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVNYEGTDLEIGFNVSYVLDVLNALKC-----EDVHMLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|15640045|ref|NP_062597.1| DNA polymerase III subunit beta [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121727891|ref|ZP_01680950.1| DNA polymerase III, beta chain [Vibrio cholerae V52]
 gi|147674757|ref|YP_001218399.1| DNA polymerase III subunit beta [Vibrio cholerae O395]
 gi|153819849|ref|ZP_01972516.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457]
 gi|153821934|ref|ZP_01974601.1| DNA polymerase III, beta chain [Vibrio cholerae B33]
 gi|227080250|ref|YP_002808801.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2]
 gi|229508298|ref|ZP_04397802.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286]
 gi|229508863|ref|ZP_04398354.1| DNA polymerase III beta subunit [Vibrio cholerae B33]
 gi|229517134|ref|ZP_04406580.1| DNA polymerase III beta subunit [Vibrio cholerae RC9]
 gi|229606572|ref|YP_002877220.1| DNA polymerase III subunit beta [Vibrio cholerae MJ-1236]
 gi|254851578|ref|ZP_05240928.1| DNA polymerase III subunit beta [Vibrio cholerae MO10]
 gi|262155884|ref|ZP_06029006.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1]
 gi|262167101|ref|ZP_06034816.1| DNA polymerase III beta subunit [Vibrio cholerae RC27]
 gi|298501198|ref|ZP_07010997.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757]
 gi|14547987|sp|Q9KVX5|DPO3B_VIBCH RecName: Full=DNA polymerase III subunit beta
 gi|9654404|gb|AAF93191.1| DNA polymerase III, beta chain [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121629835|gb|EAX62250.1| DNA polymerase III, beta chain [Vibrio cholerae V52]
 gi|126509610|gb|EAZ72204.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457]
 gi|126520554|gb|EAZ77777.1| DNA polymerase III, beta chain [Vibrio cholerae B33]
 gi|146316640|gb|ABQ21179.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
 gi|227008138|gb|ACP04350.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2]
 gi|227011984|gb|ACP08194.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
 gi|229346197|gb|EEO11169.1| DNA polymerase III beta subunit [Vibrio cholerae RC9]
 gi|229354138|gb|EEO19070.1| DNA polymerase III beta subunit [Vibrio cholerae B33]
 gi|229354571|gb|EEO19493.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286]
 gi|229369227|gb|ACQ59650.1| DNA polymerase III beta subunit [Vibrio cholerae MJ-1236]
 gi|254847283|gb|EET25697.1| DNA polymerase III subunit beta [Vibrio cholerae MO10]
 gi|262024487|gb|EEY43173.1| DNA polymerase III beta subunit [Vibrio cholerae RC27]
 gi|262030336|gb|EEY48978.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1]
 gi|297540070|gb|EFH76132.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757]
          Length = 366

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|325915700|ref|ZP_08178005.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538117|gb|EGD09808.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 366

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 218/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVAVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         IIVPRK V E+LR+L + D  V++ +  S I +    ++ + +
Sbjct: 176 LALCETELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|91228347|ref|ZP_01262275.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01]
 gi|91188107|gb|EAS74411.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01]
          Length = 366

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVMLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + + + + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|83642916|ref|YP_431351.1| DNA polymerase III subunit beta [Hahella chejuensis KCTC 2396]
 gi|83630959|gb|ABC26926.1| DNA polymerase III, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 367

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 212/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+T+ R  ++  L     ++E++ T+PV  +VLL A DG L I  +  E+E+   I   
Sbjct: 1   MKLTITREALVTSLQMISGVVEKRQTMPVLANVLLDARDGKLVITGTNMEVELVAEISDV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
           +++    ITV A    DI R L +GA I    K+  L    N+ +G S+F L + P   F
Sbjct: 61  NIEHESRITVPAKKFTDICRALPEGAAIGIELKDGRL----NVRYGSSHFILSTLPAEHF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +EE       L    LK L++ T FAMA +++RYYLNG+   ++E+ L+   VATDG
Sbjct: 117 PNVEEEPESVKVTLPQRELKRLIDATAFAMAQQDVRYYLNGMLMELDEQGLR--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+A V +   +++    IVPRK + E+ R+L+  D S  +   ++ +  ++   + +
Sbjct: 175 HRLALANVSLQTGVSEKRQPIVPRKGILELGRLLNDTDESCTLVFGDNHVRASVGHFTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG+FP+YQ VIP S DK +  +   L+  + R SI+S   I+ V+L      L + 
Sbjct: 235 SKLIDGKFPDYQRVIPRSGDKVMLADRVLLKGVLSRASILSHESIRGVRLQFEEGLLKVF 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  +A +S+ V Y    + I FN  YL+++++ +      D++V   L ++NSS  
Sbjct: 295 ANNPDQEEAEDSLEVEYPHEALQIGFNVGYLIDVLNALD-----DEQVKVTLSNANSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + G D           +A YV+MPMR+
Sbjct: 350 VEGVDTR---------DAVYVVMPMRL 367


>gi|325499508|gb|EGC97367.1| DNA polymerase III subunit beta [Escherichia fergusonii ECD227]
          Length = 366

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGTTTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|183597171|ref|ZP_02958664.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827]
 gi|188023485|gb|EDU61525.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827]
          Length = 366

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +P +
Sbjct: 1   MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALLLTGTDLEMEMMAHVPLT 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I    +++    + +  G S F L + P ++FP
Sbjct: 61  QEHDVGATTVPARKFFDIWRGLPEGSEIRVELDDD---RLLVRSGRSRFSLSTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    + L+   V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  Q     S+IVPRK V E++R+L   D+ V++ +  + I  ++     + 
Sbjct: 176 RLAVCAMDI-GQDLPSHSVIVPRKGVIELMRLLDGGDTPVQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S+ V     +F  D+  SSV I
Sbjct: 295 NNPEQEEAEEIVDVNYQGTEMEIGFNVSYILDVLNALKSENV----TLFLTDAV-SSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +DS ++      A YV+MPMR+
Sbjct: 350 ----EDSASSA-----AVYVVMPMRL 366


>gi|15804295|ref|NP_290334.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 EDL933]
 gi|15833890|ref|NP_312663.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           Sakai]
 gi|16131569|ref|NP_418156.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250442|ref|NP_756482.1| DNA polymerase III subunit beta [Escherichia coli CFT073]
 gi|74314015|ref|YP_312434.1| DNA polymerase III subunit beta [Shigella sonnei Ss046]
 gi|82546035|ref|YP_409982.1| DNA polymerase III subunit beta [Shigella boydii Sb227]
 gi|82779230|ref|YP_405579.1| DNA polymerase III subunit beta [Shigella dysenteriae Sd197]
 gi|89110312|ref|AP_004092.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|91213223|ref|YP_543209.1| DNA polymerase III subunit beta [Escherichia coli UTI89]
 gi|110644044|ref|YP_671774.1| DNA polymerase III subunit beta [Escherichia coli 536]
 gi|117625977|ref|YP_859300.1| DNA polymerase III subunit beta [Escherichia coli APEC O1]
 gi|157156673|ref|YP_001465186.1| DNA polymerase III subunit beta [Escherichia coli E24377A]
 gi|157163181|ref|YP_001460499.1| DNA polymerase III subunit beta [Escherichia coli HS]
 gi|168748583|ref|ZP_02773605.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753590|ref|ZP_02778597.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759887|ref|ZP_02784894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766188|ref|ZP_02791195.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772264|ref|ZP_02797271.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779923|ref|ZP_02804930.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168798736|ref|ZP_02823743.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018063|ref|YP_001723017.1| DNA polymerase III subunit beta [Escherichia coli ATCC 8739]
 gi|170083203|ref|YP_001732523.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682488|ref|YP_001746029.1| DNA polymerase III subunit beta [Escherichia coli SMS-3-5]
 gi|187730327|ref|YP_001882465.1| DNA polymerase III subunit beta [Shigella boydii CDC 3083-94]
 gi|188492542|ref|ZP_02999812.1| DNA polymerase III, beta subunit [Escherichia coli 53638]
 gi|191165808|ref|ZP_03027646.1| DNA polymerase III, beta subunit [Escherichia coli B7A]
 gi|191170441|ref|ZP_03031994.1| DNA polymerase III, beta subunit [Escherichia coli F11]
 gi|193063787|ref|ZP_03044874.1| DNA polymerase III, beta subunit [Escherichia coli E22]
 gi|194428142|ref|ZP_03060686.1| DNA polymerase III, beta subunit [Escherichia coli B171]
 gi|194431323|ref|ZP_03063616.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012]
 gi|194435912|ref|ZP_03068015.1| DNA polymerase III, beta subunit [Escherichia coli 101-1]
 gi|195936322|ref|ZP_03081704.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807282|ref|ZP_03249619.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813217|ref|ZP_03254546.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820496|ref|ZP_03260816.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400437|ref|YP_002273227.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921178|ref|YP_002295262.1| DNA polymerase III subunit beta [Escherichia coli SE11]
 gi|217324148|ref|ZP_03440232.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218551231|ref|YP_002385023.1| DNA polymerase III subunit beta [Escherichia fergusonii ATCC 35469]
 gi|218556266|ref|YP_002389180.1| DNA polymerase III subunit beta [Escherichia coli IAI1]
 gi|218560776|ref|YP_002393689.1| DNA polymerase III subunit beta [Escherichia coli S88]
 gi|218691989|ref|YP_002400201.1| DNA polymerase III subunit beta [Escherichia coli ED1a]
 gi|218697423|ref|YP_002405090.1| DNA polymerase III subunit beta [Escherichia coli 55989]
 gi|218702550|ref|YP_002410179.1| DNA polymerase III subunit beta [Escherichia coli IAI39]
 gi|218707347|ref|YP_002414866.1| DNA polymerase III subunit beta [Escherichia coli UMN026]
 gi|227883922|ref|ZP_04001727.1| DNA-directed DNA polymerase [Escherichia coli 83972]
 gi|237703501|ref|ZP_04533982.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA]
 gi|238902791|ref|YP_002928587.1| DNA polymerase III, beta subunit [Escherichia coli BW2952]
 gi|253771437|ref|YP_003034268.1| DNA polymerase III subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038918|ref|ZP_04872970.1| DNA polymerase III [Escherichia sp. 1_1_43]
 gi|254163652|ref|YP_003046760.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606]
 gi|254795704|ref|YP_003080541.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           TW14359]
 gi|256021281|ref|ZP_05435146.1| DNA polymerase III subunit beta [Shigella sp. D9]
 gi|256025568|ref|ZP_05439433.1| DNA polymerase III subunit beta [Escherichia sp. 4_1_40B]
 gi|260846514|ref|YP_003224292.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|260857888|ref|YP_003231779.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|260870432|ref|YP_003236834.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|261225854|ref|ZP_05940135.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258899|ref|ZP_05951432.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285120|ref|YP_003501938.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
           CB9615]
 gi|293407341|ref|ZP_06651263.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412]
 gi|293413155|ref|ZP_06655821.1| DNA polymerase III [Escherichia coli B354]
 gi|293417174|ref|ZP_06659801.1| DNA polymerase III [Escherichia coli B185]
 gi|297518856|ref|ZP_06937242.1| DNA polymerase III subunit beta [Escherichia coli OP50]
 gi|298383082|ref|ZP_06992677.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302]
 gi|300824314|ref|ZP_07104430.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7]
 gi|300896030|ref|ZP_07114591.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1]
 gi|300903024|ref|ZP_07120966.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1]
 gi|300917469|ref|ZP_07134129.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1]
 gi|300925525|ref|ZP_07141400.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1]
 gi|300932332|ref|ZP_07147600.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1]
 gi|300940886|ref|ZP_07155413.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1]
 gi|300947538|ref|ZP_07161715.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1]
 gi|300956293|ref|ZP_07168595.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1]
 gi|300983652|ref|ZP_07176693.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1]
 gi|300984541|ref|ZP_07177031.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1]
 gi|301020910|ref|ZP_07184965.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1]
 gi|301028494|ref|ZP_07191734.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1]
 gi|301047519|ref|ZP_07194595.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1]
 gi|301305953|ref|ZP_07212035.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1]
 gi|301325007|ref|ZP_07218557.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1]
 gi|301644373|ref|ZP_07244374.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1]
 gi|306815946|ref|ZP_07450084.1| DNA polymerase III subunit beta [Escherichia coli NC101]
 gi|307140401|ref|ZP_07499757.1| DNA polymerase III subunit beta [Escherichia coli H736]
 gi|307313230|ref|ZP_07592855.1| DNA polymerase III, beta subunit [Escherichia coli W]
 gi|309784249|ref|ZP_07678888.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617]
 gi|309795750|ref|ZP_07690165.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7]
 gi|312972007|ref|ZP_07786181.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70]
 gi|331644425|ref|ZP_08345554.1| DNA polymerase III, beta subunit [Escherichia coli H736]
 gi|331649527|ref|ZP_08350613.1| DNA polymerase III, beta subunit [Escherichia coli M605]
 gi|331655361|ref|ZP_08356360.1| DNA polymerase III, beta subunit [Escherichia coli M718]
 gi|331660043|ref|ZP_08360981.1| DNA polymerase III, beta subunit [Escherichia coli TA206]
 gi|331665351|ref|ZP_08366252.1| DNA polymerase III, beta subunit [Escherichia coli TA143]
 gi|331670545|ref|ZP_08371384.1| DNA polymerase III, beta subunit [Escherichia coli TA271]
 gi|331675191|ref|ZP_08375944.1| DNA polymerase III, beta subunit [Escherichia coli TA280]
 gi|331679799|ref|ZP_08380469.1| DNA polymerase III, beta subunit [Escherichia coli H591]
 gi|331685425|ref|ZP_08386011.1| DNA polymerase III, beta subunit [Escherichia coli H299]
 gi|332282512|ref|ZP_08394925.1| DNA polymerase III subunit beta [Shigella sp. D9]
 gi|71159295|sp|P0A990|DPO3B_ECO57 RecName: Full=DNA polymerase III subunit beta
 gi|71159296|sp|P0A989|DPO3B_ECOL6 RecName: Full=DNA polymerase III subunit beta
 gi|71159297|sp|P0A988|DPO3B_ECOLI RecName: Full=DNA polymerase III subunit beta
 gi|494833|pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of
           Escherichia Coli Dna Polymerase Iii Holoenzyme: A
           Sliding Dna Clamp
 gi|494834|pdb|2POL|B Chain B, Three-Dimensional Structure Of The Beta Subunit Of
           Escherichia Coli Dna Polymerase Iii Holoenzyme: A
           Sliding Dna Clamp
 gi|34809863|pdb|1MMI|A Chain A, E. Coli Dna Polymerase Beta Subunit
 gi|34809864|pdb|1MMI|B Chain B, E. Coli Dna Polymerase Beta Subunit
 gi|39654966|pdb|1UNN|A Chain A, Complex Of Beta-Clamp Processivity Factor And Little
           Finger Domain Of Poliv
 gi|39654967|pdb|1UNN|B Chain B, Complex Of Beta-Clamp Processivity Factor And Little
           Finger Domain Of Poliv
 gi|51247132|pdb|1OK7|A Chain A, A Conserved Protein Binding-Site On Bacterial Sliding
           Clamps
 gi|51247133|pdb|1OK7|B Chain B, A Conserved Protein Binding-Site On Bacterial Sliding
           Clamps
 gi|166235467|pdb|3BEP|A Chain A, Structure Of A Sliding Clamp On Dna
 gi|166235468|pdb|3BEP|B Chain B, Structure Of A Sliding Clamp On Dna
 gi|194709177|pdb|3D1E|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Ii Peptide
 gi|194709178|pdb|3D1E|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Ii Peptide
 gi|194709180|pdb|3D1F|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Iii Peptide
 gi|194709181|pdb|3D1F|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Iii Peptide
 gi|194709184|pdb|3D1G|A Chain A, Structure Of A Small Molecule Inhibitor Bound To A Dna
           Sliding Clamp
 gi|194709185|pdb|3D1G|B Chain B, Structure Of A Small Molecule Inhibitor Bound To A Dna
           Sliding Clamp
 gi|12518540|gb|AAG58898.1|AE005601_4 DNA polymerase III, beta-subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|26110872|gb|AAN83056.1|AE016769_171 DNA polymerase III, beta chain [Escherichia coli CFT073]
 gi|145761|gb|AAB59150.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|290549|gb|AAA62052.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|1790136|gb|AAC76724.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364111|dbj|BAB38059.1| DNA polymerase III beta-subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73857492|gb|AAZ90199.1| DNA polymerase III beta subunit [Shigella sonnei Ss046]
 gi|81243378|gb|ABB64088.1| DNA polymerase III, beta-subunit [Shigella dysenteriae Sd197]
 gi|81247446|gb|ABB68154.1| DNA polymerase III beta-subunit [Shigella boydii Sb227]
 gi|85676343|dbj|BAE77593.1| DNA polymerase III, beta subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|91074797|gb|ABE09678.1| DNA polymerase III, beta-subunit [Escherichia coli UTI89]
 gi|110345636|gb|ABG71873.1| DNA polymerase III, beta chain [Escherichia coli 536]
 gi|115515101|gb|ABJ03176.1| DNA polymerase III subunit beta [Escherichia coli APEC O1]
 gi|157068861|gb|ABV08116.1| DNA polymerase III, beta subunit [Escherichia coli HS]
 gi|157078703|gb|ABV18411.1| DNA polymerase III, beta subunit [Escherichia coli E24377A]
 gi|169752991|gb|ACA75690.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 8739]
 gi|169891038|gb|ACB04745.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170520206|gb|ACB18384.1| DNA polymerase III, beta subunit [Escherichia coli SMS-3-5]
 gi|187427319|gb|ACD06593.1| DNA polymerase III, beta subunit [Shigella boydii CDC 3083-94]
 gi|187771361|gb|EDU35205.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016968|gb|EDU55090.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487741|gb|EDU62844.1| DNA polymerase III, beta subunit [Escherichia coli 53638]
 gi|189002623|gb|EDU71609.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359039|gb|EDU77458.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364639|gb|EDU83058.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369478|gb|EDU87894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189378717|gb|EDU97133.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|190904132|gb|EDV63843.1| DNA polymerase III, beta subunit [Escherichia coli B7A]
 gi|190909249|gb|EDV68835.1| DNA polymerase III, beta subunit [Escherichia coli F11]
 gi|192930502|gb|EDV83109.1| DNA polymerase III, beta subunit [Escherichia coli E22]
 gi|194413900|gb|EDX30178.1| DNA polymerase III, beta subunit [Escherichia coli B171]
 gi|194420778|gb|EDX36854.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012]
 gi|194425455|gb|EDX41439.1| DNA polymerase III, beta subunit [Escherichia coli 101-1]
 gi|208727083|gb|EDZ76684.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734494|gb|EDZ83181.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740619|gb|EDZ88301.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161837|gb|ACI39270.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209754118|gb|ACI75366.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754120|gb|ACI75367.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754122|gb|ACI75368.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754124|gb|ACI75369.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754126|gb|ACI75370.1| replication initiation protein DnaA [Escherichia coli]
 gi|209914437|dbj|BAG79511.1| DNA polymerase III beta subunit [Escherichia coli SE11]
 gi|217320369|gb|EEC28793.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354155|emb|CAV00755.1| DNA polymerase III, beta subunit [Escherichia coli 55989]
 gi|218358773|emb|CAQ91430.1| DNA polymerase III, beta subunit [Escherichia fergusonii ATCC
           35469]
 gi|218363035|emb|CAR00674.1| DNA polymerase III, beta subunit [Escherichia coli IAI1]
 gi|218367545|emb|CAR05330.1| DNA polymerase III, beta subunit [Escherichia coli S88]
 gi|218372536|emb|CAR20411.1| DNA polymerase III, beta subunit [Escherichia coli IAI39]
 gi|218429553|emb|CAR10376.1| DNA polymerase III, beta subunit [Escherichia coli ED1a]
 gi|218434444|emb|CAR15372.1| DNA polymerase III, beta subunit [Escherichia coli UMN026]
 gi|222035415|emb|CAP78160.1| DNA polymerase III subunit beta [Escherichia coli LF82]
 gi|226838883|gb|EEH70910.1| DNA polymerase III [Escherichia sp. 1_1_43]
 gi|226902765|gb|EEH89024.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA]
 gi|227839200|gb|EEJ49666.1| DNA-directed DNA polymerase [Escherichia coli 83972]
 gi|238860831|gb|ACR62829.1| DNA polymerase III, beta subunit [Escherichia coli BW2952]
 gi|242379240|emb|CAQ34045.1| dnaN, subunit of DNA polymerase III, beta subunit and DNA
           polymerase III, holoenzyme [Escherichia coli BL21(DE3)]
 gi|253322481|gb|ACT27083.1| DNA polymerase III, beta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975553|gb|ACT41224.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606]
 gi|253979709|gb|ACT45379.1| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)]
 gi|254595104|gb|ACT74465.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756537|dbj|BAI28039.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257761661|dbj|BAI33158.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|257766788|dbj|BAI38283.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|260447281|gb|ACX37703.1| DNA polymerase III, beta subunit [Escherichia coli DH1]
 gi|281180755|dbj|BAI57085.1| DNA polymerase III beta subunit [Escherichia coli SE15]
 gi|290764993|gb|ADD58954.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
           CB9615]
 gi|291425632|gb|EFE98668.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412]
 gi|291431205|gb|EFF04198.1| DNA polymerase III [Escherichia coli B185]
 gi|291468288|gb|EFF10783.1| DNA polymerase III [Escherichia coli B354]
 gi|294492870|gb|ADE91626.1| DNA polymerase III, beta subunit [Escherichia coli IHE3034]
 gi|298276918|gb|EFI18436.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302]
 gi|299878456|gb|EFI86667.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1]
 gi|300300579|gb|EFJ56964.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1]
 gi|300306875|gb|EFJ61395.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1]
 gi|300316880|gb|EFJ66664.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1]
 gi|300360090|gb|EFJ75960.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1]
 gi|300398377|gb|EFJ81915.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1]
 gi|300404930|gb|EFJ88468.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1]
 gi|300408374|gb|EFJ91912.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1]
 gi|300415273|gb|EFJ98583.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1]
 gi|300418365|gb|EFK01676.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1]
 gi|300452875|gb|EFK16495.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1]
 gi|300454367|gb|EFK17860.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1]
 gi|300459918|gb|EFK23411.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1]
 gi|300523201|gb|EFK44270.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7]
 gi|300838804|gb|EFK66564.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1]
 gi|300848101|gb|EFK75861.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1]
 gi|301077314|gb|EFK92120.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1]
 gi|305850342|gb|EFM50799.1| DNA polymerase III subunit beta [Escherichia coli NC101]
 gi|306906913|gb|EFN37422.1| DNA polymerase III, beta subunit [Escherichia coli W]
 gi|307555841|gb|ADN48616.1| DNA polymerase III, beta-subunit [Escherichia coli ABU 83972]
 gi|307628777|gb|ADN73081.1| DNA polymerase III subunit beta [Escherichia coli UM146]
 gi|308120629|gb|EFO57891.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7]
 gi|308927756|gb|EFP73224.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617]
 gi|309704148|emb|CBJ03495.1| DNA polymerase III beta-subunit [Escherichia coli ETEC H10407]
 gi|310334384|gb|EFQ00589.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70]
 gi|312948268|gb|ADR29095.1| DNA polymerase III subunit beta [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315063007|gb|ADT77334.1| DNA polymerase III, beta subunit [Escherichia coli W]
 gi|315138285|dbj|BAJ45444.1| DNA polymerase III subunit beta [Escherichia coli DH1]
 gi|315254612|gb|EFU34580.1| DNA polymerase III, beta subunit [Escherichia coli MS 85-1]
 gi|315285494|gb|EFU44939.1| DNA polymerase III, beta subunit [Escherichia coli MS 110-3]
 gi|315292859|gb|EFU52211.1| DNA polymerase III, beta subunit [Escherichia coli MS 153-1]
 gi|315296899|gb|EFU56187.1| DNA polymerase III, beta subunit [Escherichia coli MS 16-3]
 gi|315618593|gb|EFU99179.1| DNA polymerase III, beta subunit [Escherichia coli 3431]
 gi|320174825|gb|EFW49948.1| DNA polymerase III beta subunit [Shigella dysenteriae CDC 74-1112]
 gi|320180042|gb|EFW54984.1| DNA polymerase III beta subunit [Shigella boydii ATCC 9905]
 gi|320185534|gb|EFW60300.1| DNA polymerase III beta subunit [Shigella flexneri CDC 796-83]
 gi|320191199|gb|EFW65849.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320193753|gb|EFW68386.1| DNA polymerase III beta subunit [Escherichia coli WV_060327]
 gi|320201271|gb|EFW75852.1| DNA polymerase III beta subunit [Escherichia coli EC4100B]
 gi|320639426|gb|EFX09041.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           G5101]
 gi|320644869|gb|EFX13905.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str.
           493-89]
 gi|320650133|gb|EFX18629.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. H
           2687]
 gi|320655481|gb|EFX23416.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661107|gb|EFX28543.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666233|gb|EFX33239.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323155377|gb|EFZ41560.1| DNA polymerase III, beta subunit [Escherichia coli EPECa14]
 gi|323161047|gb|EFZ46966.1| DNA polymerase III, beta subunit [Escherichia coli E128010]
 gi|323164687|gb|EFZ50482.1| DNA polymerase III, beta subunit [Shigella sonnei 53G]
 gi|323173319|gb|EFZ58948.1| DNA polymerase III, beta subunit [Escherichia coli LT-68]
 gi|323177713|gb|EFZ63297.1| DNA polymerase III, beta subunit [Escherichia coli 1180]
 gi|323182496|gb|EFZ67900.1| DNA polymerase III, beta subunit [Escherichia coli 1357]
 gi|323189564|gb|EFZ74844.1| DNA polymerase III, beta subunit [Escherichia coli RN587/1]
 gi|323376399|gb|ADX48667.1| DNA polymerase III, beta subunit [Escherichia coli KO11]
 gi|323934948|gb|EGB31326.1| DNA polymerase III [Escherichia coli E1520]
 gi|323949944|gb|EGB45828.1| DNA polymerase III [Escherichia coli H252]
 gi|323955005|gb|EGB50783.1| DNA polymerase III [Escherichia coli H263]
 gi|323959766|gb|EGB55416.1| DNA polymerase III [Escherichia coli H489]
 gi|323965762|gb|EGB61213.1| DNA polymerase III [Escherichia coli M863]
 gi|323971178|gb|EGB66424.1| DNA polymerase III [Escherichia coli TA007]
 gi|323975232|gb|EGB70336.1| DNA polymerase III [Escherichia coli TW10509]
 gi|324008037|gb|EGB77256.1| DNA polymerase III, beta subunit [Escherichia coli MS 57-2]
 gi|324012738|gb|EGB81957.1| DNA polymerase III, beta subunit [Escherichia coli MS 60-1]
 gi|324018431|gb|EGB87650.1| DNA polymerase III, beta subunit [Escherichia coli MS 117-3]
 gi|324115947|gb|EGC09873.1| DNA polymerase III [Escherichia coli E1167]
 gi|326337250|gb|EGD61085.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326341621|gb|EGD65410.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
           1125]
 gi|327250844|gb|EGE62546.1| DNA polymerase III, beta subunit [Escherichia coli STEC_7v]
 gi|331036719|gb|EGI08945.1| DNA polymerase III, beta subunit [Escherichia coli H736]
 gi|331042025|gb|EGI14169.1| DNA polymerase III, beta subunit [Escherichia coli M605]
 gi|331047376|gb|EGI19454.1| DNA polymerase III, beta subunit [Escherichia coli M718]
 gi|331053258|gb|EGI25291.1| DNA polymerase III, beta subunit [Escherichia coli TA206]
 gi|331057861|gb|EGI29847.1| DNA polymerase III, beta subunit [Escherichia coli TA143]
 gi|331062607|gb|EGI34527.1| DNA polymerase III, beta subunit [Escherichia coli TA271]
 gi|331067636|gb|EGI39038.1| DNA polymerase III, beta subunit [Escherichia coli TA280]
 gi|331072971|gb|EGI44296.1| DNA polymerase III, beta subunit [Escherichia coli H591]
 gi|331077796|gb|EGI49008.1| DNA polymerase III, beta subunit [Escherichia coli H299]
 gi|332084052|gb|EGI89259.1| DNA polymerase III, beta subunit [Shigella dysenteriae 155-74]
 gi|332084891|gb|EGI90074.1| DNA polymerase III, beta subunit [Shigella boydii 5216-82]
 gi|332089554|gb|EGI94658.1| DNA polymerase III, beta subunit [Shigella boydii 3594-74]
 gi|332104864|gb|EGJ08210.1| DNA polymerase III subunit beta [Shigella sp. D9]
 gi|332345692|gb|AEE59026.1| DNA polymerase III, beta subunit DnaN [Escherichia coli UMNK88]
          Length = 366

 Score =  223 bits (568), Expect = 4e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|284923784|emb|CBG36882.1| DNA polymerase III beta-subunit [Escherichia coli 042]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QSHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|293464025|ref|ZP_06664439.1| DNA polymerase III [Escherichia coli B088]
 gi|300815052|ref|ZP_07095277.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1]
 gi|291321657|gb|EFE61093.1| DNA polymerase III [Escherichia coli B088]
 gi|300531944|gb|EFK53006.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1]
 gi|323944173|gb|EGB40253.1| DNA polymerase III [Escherichia coli H120]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QQHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|290473096|ref|YP_003465957.1| DNA polymerase III subunit beta [Xenorhabdus bovienii SS-2004]
 gi|289172390|emb|CBJ79157.1| DNA polymerase III, beta-subunit [Xenorhabdus bovienii SS-2004]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 131/387 (33%), Positives = 215/387 (55%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +  L +  +  E+E+   +   
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMKARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
                G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+F
Sbjct: 61  QPHEQGATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+   VATDG
Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  ++I  Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     +
Sbjct: 175 HRLAVCSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T
Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  + SSV 
Sbjct: 294 ANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVK 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I      +         A YV+MPMR+
Sbjct: 349 IENSASQA---------ATYVVMPMRL 366


>gi|193069140|ref|ZP_03050097.1| DNA polymerase III, beta subunit [Escherichia coli E110019]
 gi|192957464|gb|EDV87910.1| DNA polymerase III, beta subunit [Escherichia coli E110019]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I +Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-SQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|300721091|ref|YP_003710359.1| DNA polymerase III subunit beta [Xenorhabdus nematophila ATCC
           19061]
 gi|297627576|emb|CBJ88095.1| DNA polymerase III, beta-subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 130/387 (33%), Positives = 214/387 (55%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E E+   +   
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLETEMKARVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
                G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+F
Sbjct: 61  QPHEQGATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDG
Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     +
Sbjct: 175 HRLAVCSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T
Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  + SSV 
Sbjct: 294 ANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVK 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I      +         A YV+MPMR+
Sbjct: 349 IENSASQA---------ATYVVMPMRL 366


>gi|89092265|ref|ZP_01165219.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92]
 gi|89083353|gb|EAR62571.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92]
          Length = 367

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 216/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK  + R  +++ L     ++ER+ T+PV  ++LL A    L +  +  E+E+ G +   
Sbjct: 1   MKFVISREALIKPLQLVAGVVERRQTLPVLSNILLVAEGDQLSMTGTDLEVELVGRVTLD 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     GS+TV A  L DI + L D A+I        G ++ I  G S F L + P +
Sbjct: 61  EPAE---AGSVTVPARKLMDICKSLPDSARIEL---TLTGQKMVIKAGRSRFTLSTLPAA 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP+ ++        +    L+NL+++T F+MA +++RYYLNG+   I    L+  +V+T
Sbjct: 115 EFPNVEDSPETLELSMVQHQLRNLIDKTGFSMAQQDVRYYLNGMLLEIANGQLR--SVST 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA +  D+ A+      IIVPRK + E+ R+L + +  +++ +  S I  ++   +
Sbjct: 173 DGHRLATSVTDVEAEDGMQHQIIVPRKGILELARLLQNGEEELRLVIGASHIRAHVGDFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ VIP + DK L  +   LRQ + R++I+S+ + + V+LSLSS  L 
Sbjct: 233 FTSKLVDGKFPDYERVIPKNGDKILLSDRMELRQVLSRIAILSNEKYRGVRLSLSSGYLQ 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E++ V Y    +++ FN  YLL+ +  ++S     D V   L  SNSS
Sbjct: 293 VMANNPEQEEAEETLAVDYEGETLEVGFNVNYLLDCLSILNS-----DVVRLTLSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G D++          + YV+MPMR+
Sbjct: 348 ALVEGFDEE---------GSVYVVMPMRM 367


>gi|324111598|gb|EGC05579.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  HPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|254225545|ref|ZP_04919154.1| DNA polymerase III, beta chain [Vibrio cholerae V51]
 gi|125621865|gb|EAZ50190.1| DNA polymerase III, beta chain [Vibrio cholerae V51]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   +K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       + V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|215489041|ref|YP_002331472.1| DNA polymerase III subunit beta [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967889|ref|ZP_07782101.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75]
 gi|215267113|emb|CAS11560.1| DNA polymerase III, beta subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287450|gb|EFR15358.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75]
          Length = 366

 Score =  223 bits (567), Expect = 5e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPMRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|261346741|ref|ZP_05974385.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541]
 gi|282565141|gb|EFB70676.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541]
          Length = 366

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L++  +  E+E+   +P +
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALQLTGTDLEMEMMANVPLT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I     ++    + +  G S F L + P ++FP
Sbjct: 61  REHEVGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    + L+   V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMDIGQELPSH-SVIVPRKGVIELMRLLDGGDAPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S+ V     +F  D+ +S   +
Sbjct: 295 NNPEQEEAEEIVDVSYQGGEMEIGFNVSYILDVLNTLKSENV----TLFLTDAVSS---V 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 348 QIEDSASR-------SAVYVVMPMRL 366


>gi|77358984|ref|YP_338559.1| DNA polymerase III subunit beta [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873895|emb|CAI85116.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
           polymerase III [Pseudoalteromonas haloplanktis TAC125]
          Length = 367

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 128/387 (33%), Positives = 220/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+  ++   
Sbjct: 1   MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLEIELVASVFVG 60

Query: 61  VDVCGS-ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            D+  + +T+ A  L DI + L DG+ ++   +E++L     ++ G S F L +    +F
Sbjct: 61  DDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEHQL----LLTSGKSRFSLTTLAAEDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDG
Sbjct: 117 PNLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+A+  +   +     +I+PRK V EI+R++ + +  V +    + I +     + +
Sbjct: 175 HRLAIAQKQLKQSLNTQRQLIIPRKGVQEIMRLMVADEELVTIQFGANHIRIIDIEFTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T
Sbjct: 235 SKLVDGRFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V+F L  SNSS  
Sbjct: 295 ANNPEQEQAEEVVEVGYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I G   +          A YV+MPMR+
Sbjct: 350 IEGAGDEE---------AMYVVMPMRL 367


>gi|332304388|ref|YP_004432239.1| DNA polymerase III, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171717|gb|AEE20971.1| DNA polymerase III, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 367

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 222/386 (57%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R + L+ L      +ER++T+P+  +VL++ +D  L +  +  E+E+   +  +
Sbjct: 1   MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDNALWLTGTDLEVELISNVTLT 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G ITV A  L DI+R L +G++ISF  +   G++  I  G S + L +   +++P
Sbjct: 61  GELEEGEITVPAKKLLDIIRGLAEGSEISFHID---GSKAIIRCGRSKYSLSTLSATDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    FE++ S LK L++  HF+MA +++RYYLNG+   +  ED  +  VATDGH
Sbjct: 118 NLEDWQGELEFEISQSNLKRLIDSVHFSMAQQDVRYYLNGM--SLETEDNVIRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++          +I+PRK V EI R++   D S+KV +  + I +       + 
Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+ A  R SI+S+ + + V+L+LSS ++ +T 
Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A+E ++V Y    ++I FN  YL+++++ +++     +EV F L  SNSS  I
Sbjct: 296 NNPEQEEAVEIVDVDYQGDDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MPMR+
Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367


>gi|261250638|ref|ZP_05943213.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891]
 gi|260939207|gb|EEX95194.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891]
          Length = 366

 Score =  223 bits (567), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ LVE+T F+MA +++RYYLNG+ F I  E   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEI--EGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S  K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSTSKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----ETVRISMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MP+R+
Sbjct: 350 ENAADDS---------AMYVVMPIRL 366


>gi|294638326|ref|ZP_06716579.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291088579|gb|EFE21140.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 366

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +++ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +P S
Sbjct: 1   MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L DGA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   ++ +++ +  + +  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPHHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + VV  L  + SSV I
Sbjct: 295 NNPEQEEAEELLDVNYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+        A YV+MPMR+
Sbjct: 350 --EDAASQ-------AAVYVVMPMRL 366


>gi|238750288|ref|ZP_04611790.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380]
 gi|238711521|gb|EEQ03737.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380]
          Length = 366

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       +EV   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EEVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D +S+        A YV+MPMR+
Sbjct: 350 --EDGNSQ-------AAAYVVMPMRL 366


>gi|170766918|ref|ZP_02901371.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627]
 gi|170124356|gb|EDS93287.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627]
          Length = 366

 Score =  222 bits (566), Expect = 6e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|300719140|ref|YP_003743943.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661]
 gi|299064976|emb|CAX62096.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661]
          Length = 366

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ N+G L +  +  E+E+   +  +
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVNEGSLLLTGTDLEMEMVARVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +GA+I+   + E    + +  G S F L + P S+FP
Sbjct: 61  QEHEPGATTVPARKFFDICRGLPEGAEITVMLDGE---RMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  +      F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWTSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q+    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPVGQQLPSH-SVIVPRKGVIELVRLLDGGDTPLQVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDMEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366


>gi|188535561|ref|YP_001909358.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99]
 gi|188030603|emb|CAO98498.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99]
          Length = 366

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 1   MKFTVERELLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P S+FP
Sbjct: 61  QDHEPGATTVPARKFFDICRGLPEGAEIAVILEGE---RMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    ++L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGDELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   DS ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELVRLLDGGDSLLQVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDASCDLLKQAFSRAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 348 QIEDAASQ-------SAAYVVMPMRL 366


>gi|153212930|ref|ZP_01948524.1| DNA polymerase III, beta chain [Vibrio cholerae 1587]
 gi|229520185|ref|ZP_04409612.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80]
 gi|254291126|ref|ZP_04961923.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226]
 gi|124116156|gb|EAY34976.1| DNA polymerase III, beta chain [Vibrio cholerae 1587]
 gi|150422971|gb|EDN14921.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226]
 gi|229342779|gb|EEO07770.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80]
          Length = 366

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|260771048|ref|ZP_05879976.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972]
 gi|260613937|gb|EEX39128.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972]
          Length = 366

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS  ++ L      +  + T+P+  ++LL+  D  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A    DI R L D A I+   E   G  V +  G S F L + P S+FP
Sbjct: 61  GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++ ++ A  A    IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNLRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + +K L+  C  LRQA  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|152994045|ref|YP_001338880.1| DNA polymerase III subunit beta [Marinomonas sp. MWYL1]
 gi|150834969|gb|ABR68945.1| DNA polymerase III, beta subunit [Marinomonas sp. MWYL1]
          Length = 365

 Score =  222 bits (566), Expect = 7e-56,   Method: Compositional matrix adjust.
 Identities = 139/388 (35%), Positives = 218/388 (56%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L+ L     ++ERK T+PV  +VL++  D LL +  S  E+E+ G +P  
Sbjct: 1   MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQLLTLTGSDLEVELVGHVP-- 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +D C  G ITV A  L DI + L D A I F  +++      I  G S F L + P  EF
Sbjct: 59  LDECEEGRITVPARKLMDICKSLPDSAVIEFTLDDQKAV---IRSGRSRFSLSTLPADEF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +   +  +A + ++ L++RT FAMA +++RYYLNG+   +   D +L  VATDG
Sbjct: 116 PNIQDMQGDLTVSIAQNSVRRLIDRTGFAMANQDVRYYLNGMLLEV--ADGQLRVVATDG 173

Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRLA A  D  AQ++  +  +IVPRK V E+ R+L+  D  V++++  + I   +     
Sbjct: 174 HRLATAVED--AQVSGDLTQVIVPRKGVLELNRLLNDTDEVVELTIGTNHIRAKVAEYVF 231

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG+FP+Y  VIP +N+K +  +   LRQ   R SI+S+ + + V+L LS+  L +
Sbjct: 232 TSKLVDGKFPDYHRVIPRNNEKIVIADRLELRQVFLRASILSNEKYRGVRLILSNGMLQV 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +NP+  +A ES+ V Y    M++ FN  YLL+++  + S      EV   L+ SNSS 
Sbjct: 292 FANNPEQEEAEESVLVQYQGDNMEVGFNVGYLLDVLGVVDS-----QEVRLSLNDSNSSA 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I      +         A YV+MPMR+
Sbjct: 347 LIEEAQSHA---------AQYVVMPMRL 365


>gi|238787827|ref|ZP_04631624.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641]
 gi|238724170|gb|EEQ15813.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641]
          Length = 366

 Score =  222 bits (566), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D +S+        A YV+MPMR+
Sbjct: 350 --EDGNSQ-------AAAYVVMPMRL 366


>gi|242237462|ref|YP_002985643.1| DNA polymerase III subunit beta [Dickeya dadantii Ech703]
 gi|242129519|gb|ACS83821.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech703]
          Length = 366

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +   +FEL  + LK L+E T F+MA +++RYYLNG+ F  + + L+   VATDGH
Sbjct: 118 NLDDWQSEVAFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGDGLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   ++ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQPLPSHSVIVPRKGVMELVRLLDGGETPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFARAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  ++V       R+  ++ +  +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKCEDV-------RMLLADPASSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QLEDCASQ-------AAAYVVMPMRL 366


>gi|167041927|gb|ABZ06665.1| putative DNA polymerase III beta subunit, N-terminal domain protein
           [uncultured marine microorganism HF4000_137B17]
          Length = 371

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 231/388 (59%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+ T+ R+  L+ L HA  IIE+K T+P+  ++L++A D  + I A+  +I  T  IP  
Sbjct: 1   MEFTISRNTFLKSLSHAYGIIEKKTTLPILSNILIEAKDSKIRITATDLDIIYTEEIPLQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GS T SA ++YDI+RKL+   ++  F ++    ++ +  G+S F L       FP
Sbjct: 61  ELKKEGSTTTSASIIYDILRKLEPNTKVELFLQS--ANKLKLVSGNSKFNLLCLSPDNFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK-LCAVATD 177
              E+    +FE++S+ +  L+ +T  +++ +E R+YLNGI+ H IN E+   L +V+TD
Sbjct: 119 LADEDIKQKTFEISSNKMLKLLNKTKISISNDETRHYLNGIYLHKINIENKSFLSSVSTD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            HRL+ + ++I +      SII+P+K + +++ +L    S++K+S ++S+I   I++  +
Sbjct: 179 SHRLSSSRLEIDSN-TDFESIILPKKTIFQLISLLEQSTSAIKISNNKSKIKFEIDNGVL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             ++IDG FP+Y  V+P  N K L++     + +++RV+ +SS R + +K+ +S D L +
Sbjct: 238 ISKVIDGRFPDYSKVVPIDNVKILQIKLNEFKNSIERVTTVSSDRKEGLKMKISKDFLQL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V++P+ G+ IES+N  +N   MDI FN +YL++I     + ++ +D ++  L  + S V
Sbjct: 298 SVNSPNSGEGIESINAIFNSDDMDISFNSRYLIDI-----ASQIENDLIIINLKDAASPV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  KD   K       N+F+V+MPM+I
Sbjct: 353 LI--KDMSDK-------NSFHVVMPMKI 371


>gi|58579625|ref|YP_198641.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621659|ref|YP_449031.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574272|ref|YP_001911201.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58424219|gb|AAW73256.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365599|dbj|BAE66757.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188518724|gb|ACD56669.1| DNA polymerase III, beta subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 366

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 219/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+     A 
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMIARTMAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DVQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+LR+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELLRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|254507273|ref|ZP_05119409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16]
 gi|219549733|gb|EED26722.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16]
          Length = 366

 Score =  222 bits (565), Expect = 8e-56,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGH
Sbjct: 118 NIEDWQSEVEISLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTALGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++  P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + DS         A YV+MP+R+
Sbjct: 350 ENAEDDS---------AMYVVMPIRL 366


>gi|21326650|gb|AAL30090.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris]
          Length = 366

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 127/385 (32%), Positives = 219/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q N+G L +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTV---SQTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L + E ++    +    IIVPRK V E+LR+L + D  V++ L  S I +    ++ + +
Sbjct: 176 LPLCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|304398067|ref|ZP_07379942.1| DNA polymerase III, beta subunit [Pantoea sp. aB]
 gi|304354353|gb|EFM18725.1| DNA polymerase III, beta subunit [Pantoea sp. aB]
          Length = 366

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS TV A    DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   D+ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVRIGGSNIRAHVGDYIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S         A YV+MPMR+
Sbjct: 348 QIEDVASP-------AAAYVVMPMRL 366


>gi|296100373|ref|YP_003610519.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054832|gb|ADF59570.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 366

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  +
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGDSLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C +L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|30065009|ref|NP_839180.1| DNA polymerase III subunit beta [Shigella flexneri 2a str. 2457T]
 gi|56480410|ref|NP_709499.2| DNA polymerase III subunit beta [Shigella flexneri 2a str. 301]
 gi|110807609|ref|YP_691129.1| DNA polymerase III subunit beta [Shigella flexneri 5 str. 8401]
 gi|30043270|gb|AAP18991.1| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 2457T]
 gi|56383961|gb|AAN45206.2| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 301]
 gi|110617157|gb|ABF05824.1| DNA polymerase III, beta-subunit [Shigella flexneri 5 str. 8401]
 gi|281603072|gb|ADA76056.1| DNA polymerase III, beta-subunit [Shigella flexneri 2002017]
 gi|313647709|gb|EFS12157.1| DNA polymerase III, beta subunit [Shigella flexneri 2a str. 2457T]
 gi|332750522|gb|EGJ80931.1| DNA polymerase III, beta subunit [Shigella flexneri K-671]
 gi|332750693|gb|EGJ81101.1| DNA polymerase III, beta subunit [Shigella flexneri 4343-70]
 gi|332751746|gb|EGJ82144.1| DNA polymerase III, beta subunit [Shigella flexneri 2747-71]
 gi|332764072|gb|EGJ94309.1| DNA polymerase III, beta subunit [Shigella flexneri 2930-71]
 gi|332996041|gb|EGK15668.1| DNA polymerase III, beta subunit [Shigella flexneri VA-6]
 gi|332997108|gb|EGK16724.1| DNA polymerase III, beta subunit [Shigella flexneri K-218]
 gi|333013256|gb|EGK32629.1| DNA polymerase III, beta subunit [Shigella flexneri K-304]
          Length = 366

 Score =  222 bits (565), Expect = 9e-56,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|109896334|ref|YP_659589.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c]
 gi|109698615|gb|ABG38535.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c]
          Length = 367

 Score =  222 bits (565), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 220/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R + L+ L      +ER++T+P+  +VL++ +D  L +  +  E+E+   +  +
Sbjct: 1   MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDSALWLTGTDLEVELISNVTLT 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G ITV A  L DI+R L +G++ISF  +   G +  +  G S + L +   +++P
Sbjct: 61  GDFEEGEITVPAKKLLDIIRGLTEGSEISFHVD---GNKAILRCGRSKYSLSTLSANDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    FE++ + LK L++  HF+MA +++RYYLNG+   +  ED  +  VATDGH
Sbjct: 118 NLEDWQGELEFEISQANLKRLIDSVHFSMAQQDVRYYLNGM--SLETEDNVIRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++          +I+PRK V EI R++   D S+KV +  + I +       + 
Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+ A  R SI+S+ + + V+L+LSS ++ +T 
Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A+E ++V Y    ++I FN  YL+++++ +++     +EV F L  SNSS  I
Sbjct: 296 NNPEQEEAVEIVDVDYQGGDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MPMR+
Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367


>gi|311277334|ref|YP_003939565.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1]
 gi|308746529|gb|ADO46281.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1]
          Length = 366

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F +A + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTVAQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCAMPIGETLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|293393722|ref|ZP_06638030.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera
           DSM 4582]
 gi|291423766|gb|EFE96987.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera
           DSM 4582]
          Length = 366

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   + E    + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEITVQLDGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPIGQQLPSH-SVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVIYEGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  SK       +A YV+MPMR+
Sbjct: 348 QIEDGASK-------SAAYVVMPMRL 366


>gi|197262814|ref|ZP_03162888.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241069|gb|EDY23689.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 366

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       NA YV+MPMR+
Sbjct: 350 --EDAASQ-------NAAYVVMPMRL 366


>gi|238765485|ref|ZP_04626404.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638]
 gi|238696309|gb|EEP89107.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638]
          Length = 366

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GAQI+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAQITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+        A YV+MPMR+
Sbjct: 350 --EDGASQ-------AAAYVVMPMRL 366


>gi|332997867|gb|EGK17475.1| DNA polymerase III, beta subunit [Shigella flexneri K-272]
 gi|333013662|gb|EGK33027.1| DNA polymerase III, beta subunit [Shigella flexneri K-227]
          Length = 366

 Score =  221 bits (564), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  HPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|325922760|ref|ZP_08184494.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865]
 gi|325546756|gb|EGD17876.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865]
          Length = 366

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 219/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+LR+L + D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|297581953|ref|ZP_06943873.1| DNA polymerase subunit III [Vibrio cholerae RC385]
 gi|297533820|gb|EFH72661.1| DNA polymerase subunit III [Vibrio cholerae RC385]
          Length = 366

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK   E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGGLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|117619320|ref|YP_854529.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560727|gb|ABK37675.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 367

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  +L  L      +  + T+P+  +VLL  ++GLL +  +  E+E+ G +  +
Sbjct: 1   MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DI R L +GA I    E   G  + I  G S F L + P +E+P
Sbjct: 61  SDSQDGRTTVPARKLLDICRGLPEGADIRLNTE---GERLIIRSGRSRFNLSTLPATEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E V  F++    LK L++ T F+MA++++RYYLNG+ F    E   L  VATDGH
Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFE--SEGHGLRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    ++V +      +I+PRK V E++R+L ++D  V++ +  S +   ++    + 
Sbjct: 176 RLATCRREVVTESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+++ VIP ++DK L     +LRQA  R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       D++   L  S SS  I
Sbjct: 296 NNPEQEEAEELLDVQYEAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D DS+       +A YV+MPMRI
Sbjct: 351 --EDFDSQ-------DAQYVVMPMRI 367


>gi|153827733|ref|ZP_01980400.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2]
 gi|229515948|ref|ZP_04405405.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21]
 gi|149737791|gb|EDM52696.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2]
 gi|229347048|gb|EEO12010.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21]
          Length = 366

 Score =  221 bits (563), Expect = 1e-55,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D  S         A YV+MP+R+
Sbjct: 350 ENVDDGS---------AMYVVMPIRL 366


>gi|121998016|ref|YP_001002803.1| DNA polymerase III subunit beta [Halorhodospira halophila SL1]
 gi|121589421|gb|ABM62001.1| DNA polymerase III, beta subunit [Halorhodospira halophila SL1]
          Length = 366

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/385 (32%), Positives = 208/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V+R  +L  L     ++ER+ T+PV  ++ ++A    L++ A+  E+E+   + A+
Sbjct: 1   MRFEVQREPLLAALQSIVGVVERRQTLPVLGNIRVEARSQQLQLTATDLEVELVAYLEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A    DI R L +GA IS     +  T   +    S F L + P  EFP 
Sbjct: 61  TKDEGVITLPARKWLDICRNLPEGASISIEANQDRAT---LRAASSRFSLATLPADEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +      + E+    L+ L+ERTHF+MA  ++RYYLNG+   +     +  AVATDGHR
Sbjct: 118 VESIGDTEAVEIPRGELRRLIERTHFSMAQHDVRYYLNGLLLELTGSGAR--AVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AE D   Q+A+   +IVPRK V E+LR+L   D    +    + + + ++S+ ++ +
Sbjct: 176 LALAESDSPVQVAQPRQVIVPRKGVQELLRLLDDADEPATLEFGTNHVRVTLQSVRLTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y  VIP   DK + ++   LRQA+ RV+I+S+ + + ++ ++  D L +   
Sbjct: 236 LIDGVFPDYNRVIPQDGDKHVLIDRQYLRQALTRVAILSNEKYRGIRFAVEGDTLRIGSH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + + Y    +++ FN  YLL+ +  + +     + V   L  ++SS  IR
Sbjct: 296 NPEQEEAEEELGIEYGGEAVELGFNANYLLDALGALDT-----ERVQVTLTDASSSGLIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  D         NA YV+MPMR+
Sbjct: 351 AEGSD---------NARYVVMPMRL 366


>gi|88705399|ref|ZP_01103110.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71]
 gi|88700489|gb|EAQ97597.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71]
          Length = 367

 Score =  221 bits (563), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V R  +L+ L     ++ER+ T+PV  +VLL  +   L I  +  E+E+ G +   
Sbjct: 1   MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G ITV A  L DI + L DGA +     +   T   +  G S F L + P  EFP
Sbjct: 61  TAGEAGEITVPARKLADICKSLPDGADLEIAVADGKAT---VRSGRSRFTLATLPAREFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++    + F L    L+ L+ERT FAMA +++RYYLNG+++ +    L+  AVATDGH
Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAGRLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+       +  +   +I+PRK V E+ R++ S D  V + L  + +       + + 
Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQSDDEDVTIILGSNHLRATTAEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P + DK ++ + T LRQA  R +I+S+ + + V+L LS   L +  
Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSEGSLEIVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A ES+ V Y+   ++I FN  YLL+++  +S      +++ F L   NSS  +
Sbjct: 296 NNPEQEQAEESLPVDYSGDALEIGFNVGYLLDVLGVLSG-----EKIRFSLSDPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 351 EETDGG---------DSLYVVMPMRL 367


>gi|238917985|ref|YP_002931499.1| DNA polymerase III subunit beta [Edwardsiella ictaluri 93-146]
 gi|269137360|ref|YP_003294060.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202]
 gi|238867553|gb|ACR67264.1| DNA polymerase III, beta subunit, putative [Edwardsiella ictaluri
           93-146]
 gi|267983020|gb|ACY82849.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202]
 gi|304557461|gb|ADM40125.1| DNA polymerase III beta subunit [Edwardsiella tarda FL6-60]
          Length = 366

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +++ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +P  
Sbjct: 1   MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L DGA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   ++ +++ +  + +  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + VV  L  + SSV I
Sbjct: 295 NNPEQEEAEELLDVDYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+        A YV+MPMR+
Sbjct: 350 --EDAASQ-------AAVYVVMPMRL 366


>gi|254515868|ref|ZP_05127928.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3]
 gi|219675590|gb|EED31956.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3]
          Length = 367

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 210/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V R  +L+ L     ++ER+ T+PV  +VLL  +   L I  +  E+E+ G +   
Sbjct: 1   MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S    G IT+ A  L DI + L DGA +     +   T   +  G S F L + P  EFP
Sbjct: 61  SEGDAGEITLPARKLADICKSLPDGADLEISVSDGKAT---VRSGRSRFTLATLPAREFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++    + F L    L+ L+ERT FAMA +++RYYLNG+++ +    L+  AVATDGH
Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAGRLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+       +  +   +I+PRK V E+ R++ + D  V + L  + +       + + 
Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQNDDEDVTIILGSNHLRATTTEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P + DK ++ + T LRQA  R +I+S+ + + V+L LS+  L +  
Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSNGSLEIVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ V Y+   ++I FN  YLL+++  +S      DE+ F L   NSS  +
Sbjct: 296 NNPEQEQAEENLPVNYSGDSLEIGFNVGYLLDVLGVLSG-----DEIRFSLSDPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 351 EETDGG---------DSLYVVMPMRL 367


>gi|317046240|ref|YP_004113888.1| DNA polymerase III subunit beta [Pantoea sp. At-9b]
 gi|316947857|gb|ADU67332.1| DNA polymerase III, beta subunit [Pantoea sp. At-9b]
          Length = 366

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ N+G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEPGATTVPARKFLDICRGLPDGAEITLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   ++ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPI-GQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V++ ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVSYNGSELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S         A YV+MPMR+
Sbjct: 348 QIEDVASP-------AAAYVVMPMRL 366


>gi|152972608|ref|YP_001337754.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897211|ref|YP_002921959.1| DNA polymerase III subunit beta [Klebsiella pneumoniae NTUH-K2044]
 gi|262040465|ref|ZP_06013708.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005214|ref|ZP_08305173.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3]
 gi|150957457|gb|ABR79487.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549541|dbj|BAH65892.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259042218|gb|EEW43246.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536346|gb|EGF62708.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3]
          Length = 366

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|283787599|ref|YP_003367464.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168]
 gi|282951053|emb|CBG90731.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168]
          Length = 366

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QAHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ + V +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVIELMRMLDGGDNPLHVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|258622959|ref|ZP_05717974.1| DNA polymerase III, beta chain [Vibrio mimicus VM573]
 gi|258626083|ref|ZP_05720934.1| DNA polymerase III, beta chain [Vibrio mimicus VM603]
 gi|262172779|ref|ZP_06040457.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451]
 gi|258581609|gb|EEW06507.1| DNA polymerase III, beta chain [Vibrio mimicus VM603]
 gi|258584742|gb|EEW09476.1| DNA polymerase III, beta chain [Vibrio mimicus VM573]
 gi|261893855|gb|EEY39841.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451]
          Length = 366

 Score =  221 bits (562), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       + V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|308188764|ref|YP_003932895.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1]
 gi|308059274|gb|ADO11446.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1]
          Length = 384

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 19  MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 78

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS TV A    DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 79  QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 135

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 136 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 193

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   ++ ++V +  S I  ++     + 
Sbjct: 194 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGENPLQVQIGGSNIRAHVGDYIFTS 252

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 253 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 312

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 313 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 365

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S         A YV+MPMR+
Sbjct: 366 QIEDVASP-------AAAYVVMPMRL 384


>gi|315125113|ref|YP_004067116.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913]
 gi|315013626|gb|ADT66964.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913]
          Length = 367

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 218/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+  ++   
Sbjct: 1   MQITISREQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVASVFVG 60

Query: 61  VDVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            DV  + +T+ A  L DI + L DG+ ++   ++    ++ ++ G S F L +    +FP
Sbjct: 61  DDVADTKLTLPAKKLLDICKSLPDGSDLTLSLQDH---QLLLTSGKSRFSLTTLAAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDGH
Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +   +     +I+PRK V EI+R++ +    V +    + I +     + + 
Sbjct: 176 RLAIAQKQLGQSLNTQRQLIIPRKGVQEIMRLMVADQELVTIQFGANHIRIIDIEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V+F L  SNSS  I
Sbjct: 296 NNPEQEQAEEVVEVMYEGDDLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   +          A YV+MPMR+
Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367


>gi|50123358|ref|YP_052525.1| DNA polymerase III subunit beta [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613884|emb|CAG77336.1| DNA polymerase III, beta chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 366

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q  +G L +  +  E+E+   +   
Sbjct: 1   MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    EDL+   VATDGH
Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L L  ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKCEGV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDSASR-------AAAYVVMPMRL 366


>gi|270264120|ref|ZP_06192387.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13]
 gi|270041769|gb|EFA14866.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13]
          Length = 366

 Score =  220 bits (561), Expect = 2e-55,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E+E    + +  G S F L + P  +FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEIAVTLESE---RMLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGQQLPSH-SVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366


>gi|85057980|ref|YP_453682.1| DNA polymerase III subunit beta [Sodalis glossinidius str.
           'morsitans']
 gi|84778500|dbj|BAE73277.1| DNA polymerase III beta subunit protein DnaN [Sodalis glossinidius
           str. 'morsitans']
          Length = 366

 Score =  220 bits (561), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 133/386 (34%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++  L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVSEDRLLLTGTDLEMEMVAQVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + I  G S + L + P S FP
Sbjct: 61  AAHEPGATTVPARKFFDICRGLPEGAEIAVTLE---GERMLIRSGRSRYSLSTLPASNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L+ S+LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V +     S+IVPRK V E++R+L   ++ VK+ +  + I  ++     + 
Sbjct: 176 RLAVCAMS-VGEALPSHSVIVPRKGVMELVRMLDGGENPVKLQIGSNNIRASVGDYIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L LS+++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDVLKQAFARAAILSNEKFRGVRLYLSANQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L    SSV I
Sbjct: 295 NNPEQEEAEEILDVTYQGSEMEIGFNVSYVLDVLNALKC-----EEVRLLLTDGVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +DS +       A YV+MPMR+
Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366


>gi|206578911|ref|YP_002235887.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342]
 gi|288932894|ref|YP_003436953.1| DNA polymerase III subunit beta [Klebsiella variicola At-22]
 gi|290511690|ref|ZP_06551058.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55]
 gi|206567969|gb|ACI09745.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342]
 gi|288887623|gb|ADC55941.1| DNA polymerase III, beta subunit [Klebsiella variicola At-22]
 gi|289775480|gb|EFD83480.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55]
          Length = 366

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPNH-SVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|294627437|ref|ZP_06706021.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598258|gb|EFF42411.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 366

 Score =  220 bits (560), Expect = 3e-55,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEIELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEAETKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|220933195|ref|YP_002512094.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994505|gb|ACL71107.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 366

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 205/385 (53%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R D+L+ L      +ER+ T+P+  +VL++A++  L +  +  E+E+       
Sbjct: 1   MRFSIQREDLLKPLQQVIGAVERRQTMPILANVLIKADEDRLSVTGTDLEVELVAEASEV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TV A  L DI R L D A +    E   G  V I+ G + F L + P ++FP+
Sbjct: 61  SASPGEATVPARKLLDICRALPDEASLEIQAE---GDRVLITSGRARFTLSALPAADFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        L    L++L+ RT FAMA +++RYYLNG+   + +  ++   VATDGHR
Sbjct: 118 LDEISSSKELTLTERELRHLILRTSFAMANQDVRYYLNGLMLEVGQNVIR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E++     A    +I+PRK V E+LR+L   D  V++ +  + I   +  L  + +
Sbjct: 176 LALCELNTTVDTASSQQVIIPRKGVQELLRLLEDSDEPVRLQIGANHIRATLPRLRFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y  VIP   D+ ++V    LR+A+ R SI+S+ + + ++L L    L +   
Sbjct: 236 LIDGRFPDYDRVIPKDGDQVMKVEREALRKALARASILSNEKYRGIRLVLGDGLLRIQAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A + +   Y    M+I FN  YLL++++ +  D +   E  F+   +NSSV +R
Sbjct: 296 NPEQEEAEDEIEAQYTGTAMEIGFNVTYLLDVLNTVEGDVI---EATFK--DANSSVLMR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                         +A YV+MPMR+
Sbjct: 351 DP---------GATDALYVVMPMRL 366


>gi|123444341|ref|YP_001008306.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163520|ref|YP_004300097.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091302|emb|CAL14188.1| DNA polymerase III, beta subunit protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318608024|emb|CBY29522.1| DNA polymerase III beta subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667750|gb|ADZ44394.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 366

 Score =  220 bits (560), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+        A YV+MPMR+
Sbjct: 350 --EDGASQ-------AAAYVVMPMRL 366


>gi|195546611|ref|YP_002117639.1| p081 [Rhizobium phage 16-3]
 gi|102642576|gb|ABF71357.1| p081 [Rhizobium phage 16-3]
          Length = 378

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 132/386 (34%), Positives = 208/386 (53%), Gaps = 30/386 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R+ +  +L +  R++E +NTIP+   + L A DG L +  +  +I  T    A 
Sbjct: 21  MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDIVATDTAAAD 80

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++ V A LL DI +K   G  +S  ++     ++ +  G S F L + P ++FP 
Sbjct: 81  VTEGGAVCVDAKLLSDIAKKT--GGDVSLSEDK---GQLIVKSGRSRFSLPALPAADFPD 135

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATDGH 179
               EY  SF++    L  L     FA++TEE R+YLNGIF H++E+ D  + AVATDGH
Sbjct: 136 LSGGEYTASFDMD---LAALFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGH 192

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  +     + A    +IVPRK VG + +       +V+VS+SE++I +      ++ 
Sbjct: 193 RLSRHQAAYPGEDA-FKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTS 245

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+YQ VIP  NDK++     ++RQA  RVS++SS R +AVKLS +  +  + V
Sbjct: 246 KLIDGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAV 305

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G A + + V Y+  P+DI FN  YL E++    + ++     +   D  + SVF 
Sbjct: 306 SSPETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPAGDI----TLALADGGSPSVF- 360

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +       VLMPMR+
Sbjct: 361 ---------TSEKAPELLAVLMPMRV 377


>gi|283836134|ref|ZP_06355875.1| hypothetical protein CIT292_10555 [Citrobacter youngae ATCC 29220]
 gi|291068323|gb|EFE06432.1| DNA polymerase III, beta subunit [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  219 bits (559), Expect = 4e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|237729023|ref|ZP_04559504.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2]
 gi|226909645|gb|EEH95563.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2]
          Length = 366

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|157144343|ref|YP_001451662.1| DNA polymerase III subunit beta [Citrobacter koseri ATCC BAA-895]
 gi|157081548|gb|ABV11226.1| hypothetical protein CKO_00047 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score =  219 bits (559), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYGGTEMEIGFNVSYVLDVLNALKC-----ETVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|16762488|ref|NP_458105.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143976|ref|NP_807318.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415710|ref|YP_152785.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182325|ref|YP_218742.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161505632|ref|YP_001572744.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161616955|ref|YP_001590920.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167548873|ref|ZP_02342632.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233392|ref|ZP_02658450.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168260378|ref|ZP_02682351.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464832|ref|ZP_02698724.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818303|ref|ZP_02830303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194471413|ref|ZP_03077397.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197251713|ref|YP_002148775.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197364638|ref|YP_002144275.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245644|ref|YP_002217787.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204928586|ref|ZP_03219785.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354576|ref|YP_002228377.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859063|ref|YP_002245714.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213648785|ref|ZP_03378838.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865135|ref|ZP_03387254.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585636|ref|YP_002639435.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238913090|ref|ZP_04656927.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289826404|ref|ZP_06545516.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25288590|pir||AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504793|emb|CAD03158.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139612|gb|AAO71178.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129967|gb|AAV79473.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129958|gb|AAX67661.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|160866979|gb|ABX23602.1| hypothetical protein SARI_03808 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366319|gb|ABX70087.1| hypothetical protein SPAB_04776 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457777|gb|EDX46616.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195632425|gb|EDX50909.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096115|emb|CAR61711.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197215416|gb|ACH52813.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197940160|gb|ACH77493.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204322019|gb|EDZ07217.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274357|emb|CAR39382.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325570|gb|EDZ13409.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332539|gb|EDZ19303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344390|gb|EDZ31154.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350419|gb|EDZ37050.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710866|emb|CAR35230.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470164|gb|ACN47994.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320088258|emb|CBY98020.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322617250|gb|EFY14155.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619062|gb|EFY15948.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625129|gb|EFY21957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630180|gb|EFY26951.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634394|gb|EFY31128.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635279|gb|EFY31994.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642897|gb|EFY39481.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647623|gb|EFY44110.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650571|gb|EFY46978.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656403|gb|EFY52695.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661583|gb|EFY57806.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661664|gb|EFY57883.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668222|gb|EFY64380.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672849|gb|EFY68957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674970|gb|EFY71056.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683660|gb|EFY79673.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687736|gb|EFY83705.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716816|gb|EFZ08387.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323192049|gb|EFZ77284.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200531|gb|EFZ85609.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204957|gb|EFZ89942.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206700|gb|EFZ91657.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211772|gb|EFZ96605.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218634|gb|EGA03341.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220035|gb|EGA04505.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224805|gb|EGA09070.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232486|gb|EGA16588.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235261|gb|EGA19346.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323241049|gb|EGA25086.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241401|gb|EGA25433.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248632|gb|EGA32562.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252069|gb|EGA35929.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258627|gb|EGA42290.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262342|gb|EGA45900.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268178|gb|EGA51654.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270592|gb|EGA54037.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625573|gb|EGE31918.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629712|gb|EGE36055.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 366

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|238793144|ref|ZP_04636772.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909]
 gi|238727517|gb|EEQ19043.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909]
          Length = 366

 Score =  219 bits (558), Expect = 5e-55,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  NPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366


>gi|16767122|ref|NP_462737.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992431|ref|ZP_02573529.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242057|ref|ZP_02666989.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444384|ref|YP_002043087.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449346|ref|YP_002047870.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|200387477|ref|ZP_03214089.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|3915668|sp|P26464|DPO3B_SALTY RecName: Full=DNA polymerase III subunit beta
 gi|2653647|gb|AAB87631.1| DNA polymerase III beta clamp subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16422411|gb|AAL22696.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194403047|gb|ACF63269.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407650|gb|ACF67869.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|199604575|gb|EDZ03120.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205329442|gb|EDZ16206.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338833|gb|EDZ25597.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248978|emb|CBG26835.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996123|gb|ACY91008.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160370|emb|CBW19895.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914967|dbj|BAJ38941.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225555|gb|EFX50610.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132198|gb|ADX19628.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990687|gb|AEF09670.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 366

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|253987485|ref|YP_003038841.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253778935|emb|CAQ82095.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica]
          Length = 366

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 218/387 (56%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +  L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMMARVTLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
           +    G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++F
Sbjct: 61  LPHEEGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDG
Sbjct: 117 PNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     +
Sbjct: 175 HRLAVCSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T
Sbjct: 234 SKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L  + SSV 
Sbjct: 294 ANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQ 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    +D  ++     NA YV+MPMR+
Sbjct: 349 I----EDCASH-----NAAYVVMPMRL 366


>gi|329894831|ref|ZP_08270631.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088]
 gi|328922725|gb|EGG30059.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088]
          Length = 375

 Score =  219 bits (558), Expect = 6e-55,   Method: Compositional matrix adjust.
 Identities = 128/393 (32%), Positives = 217/393 (55%), Gaps = 26/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK ++ER  +++ L     ++ER+ T+P+  +VL+      L +  +  E+E+TG +   
Sbjct: 1   MKFSIEREALVKPLSLVAGVVERRQTLPILANVLVNVEGSQLSLVGTDLEVELTGRVTLE 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            S  V GS+TV    L+DI + L DG+ I   ++   G ++ +  G S F L + P +EF
Sbjct: 61  DSDSVSGSVTVPGRKLFDICKSLPDGSVIELAQD---GAKLVVKSGRSRFSLATLPATEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P         S  +    LK L+E+T FAMA +++RYYLNG+ + +N    ++  VATDG
Sbjct: 118 PLVDSLNVRGSMTVDQQALKALIEQTGFAMAQQDVRYYLNGMLWELNANQFRV--VATDG 175

Query: 179 HRLAVAEV---DIVAQIAKMP---SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           HRLA + +   + V Q    P    II+PRK V E+ R+L   D+  +V+L ++ + +  
Sbjct: 176 HRLATSHIVLSEGVVQGLSGPDATQIILPRKGVLELSRLLQPGDAPAEVALGDNHLKVET 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            S +   +L+DG+FP+YQ V+P ++ K +      L+ A+ R +I+S+ + + ++L LSS
Sbjct: 236 ASFTFISKLVDGKFPDYQRVLPKNSTKTVVGERDVLKSALSRAAILSNEKYRGIRLHLSS 295

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D+L +  +NP+  +A E ++V Y   P++I FN  YLL+++  I      +D V   L  
Sbjct: 296 DQLQVVANNPEQEEAEEIISVDYQGEPLEIGFNVSYLLDVLGVIH-----EDSVKVSLSD 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + S  +   D+ +        NA YV+MPMR+
Sbjct: 351 PSGSALLEAADEHA--------NAMYVVMPMRL 375


>gi|37678196|ref|NP_932805.1| DNA polymerase III subunit beta [Vibrio vulnificus YJ016]
 gi|37196935|dbj|BAC92776.1| DNA polymerase III, beta chain [Vibrio vulnificus YJ016]
          Length = 366

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L      +  + T+P+  ++L+   +G L + A+  E+E+   +   
Sbjct: 1   MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAPLSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  +
Sbjct: 295 NNPEQEEAEEMLDVSFDGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|323462780|pdb|2XUR|A Chain A, The G157c Mutation In The Escherichia Coli Sliding Clamp
           Specifically Affects Initiation Of Replication
 gi|323462781|pdb|2XUR|B Chain B, The G157c Mutation In The Escherichia Coli Sliding Clamp
           Specifically Affects Initiation Of Replication
          Length = 373

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 8   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 67

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 68  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 124

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLN + F    E+L+   VATDGH
Sbjct: 125 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNCMLFETEGEELR--TVATDGH 182

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 183 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 241

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 242 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 301

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 302 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 356

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 357 --EDAASQ-------SAAYVVMPMRL 373


>gi|168235477|ref|ZP_02660535.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738233|ref|YP_002116781.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713735|gb|ACF92956.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291529|gb|EDY30881.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 366

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGMEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|307543591|ref|YP_003896070.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581]
 gi|307215615|emb|CBV40885.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581]
          Length = 367

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 204/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +L  L     ++ER+ T+PV  +VL+Q     + +  +  E+E+ G   AS
Sbjct: 1   MKFSISREALLRPLTLVAGVVERRQTLPVLSNVLIQVEQDQVSLTGTDLEVELIGRTVAS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  GS TV A  L DI + L D A+I    E+       +  G S F L + P +EFP
Sbjct: 61  QVDEAGSATVPARKLMDICKSLPDQAEIQLALEDNRAV---LRSGRSRFTLSTLPVAEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    LK L++ T FAMA +++RYYLNG+        ++  AVATDGH
Sbjct: 118 NIEDGQSSVELSLPRGTLKRLIDATSFAMAQQDVRYYLNGMLLEFGTNLVR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAVA      Q+     +IVPRK + E++R+L   +  V ++L  + I  +    + + 
Sbjct: 176 RLAVASRSAEIQVEPSQKLIVPRKGIMELVRLLDDGEDPVSLTLGSTHIRAHTGDFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK L    T LRQ + R +I+S+ + + V+L+L    L +  
Sbjct: 236 KLVDGKFPDYERVVPKGGDKVLIAERTELRQVLSRTAILSNEKYRGVRLNLEEGNLRVMA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ V Y    M+I FN  YL++++  +      +D V   L   NSS  +
Sbjct: 296 NNPEQEEAEENVGVEYTGPAMEIGFNVGYLVDVLSVLD-----EDRVQLTLADPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     +    +A YV+MPMR+
Sbjct: 351 ---------EEPGGGDALYVVMPMRL 367


>gi|227113115|ref|ZP_03826771.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328544|ref|ZP_03832568.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|261819372|ref|YP_003257478.1| DNA polymerase III subunit beta [Pectobacterium wasabiae WPP163]
 gi|261603385|gb|ACX85871.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae WPP163]
          Length = 366

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q  +G L +  +  E+E+   +   
Sbjct: 1   MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L L  ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKCEGV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDSASR-------AAAYVVMPMRL 366


>gi|238759585|ref|ZP_04620747.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236]
 gi|238702244|gb|EEP94799.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236]
          Length = 366

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +DS +       A YV+MPMR+
Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366


>gi|238783049|ref|ZP_04627076.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970]
 gi|238716050|gb|EEQ08035.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970]
          Length = 366

 Score =  219 bits (557), Expect = 7e-55,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366


>gi|221135256|ref|ZP_03561559.1| DNA polymerase III, beta subunit [Glaciecola sp. HTCC2999]
          Length = 368

 Score =  219 bits (557), Expect = 8e-55,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 220/387 (56%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R   L+ L      IER++T+P+  ++LL   +G+L +  +  E+E+   +  +
Sbjct: 1   MKFTISREQFLQPLQLVSGAIERRHTLPILSNILLVVKEGVLTLTGTDLEVELISHLSLA 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            D    G ITV A  L DI R L DG  I+F  +   GT+  I  G   + L +   S++
Sbjct: 61  ADSYEDGEITVPAKKLVDICRGLSDGNDITFQVD---GTKATIRSGRGRYTLSTLSASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +    F ++ + LK+L++ T FAMA +++RYYLNG+   +  ED  +  VATDG
Sbjct: 118 PNLEDWQADVEFVISQNDLKHLIDSTSFAMAQQDVRYYLNGM--SLETEDNNIRTVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    +   +  +I+PRK V EI R++ + D+SVKV +  + I +       +
Sbjct: 176 HRLALCNLAYTTETLPVRQVIIPRKGVLEINRLIEANDNSVKVKIGSNHISVKSSGFVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+++ V+P    K +  N   +++A  R SI+S+ + + V+L+LS+ +L +T
Sbjct: 236 SKLVDGRFPDHRRVLPKETTKAVTANKDVMKKAFSRASILSNEKFRGVRLNLSNGELKIT 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    ++I FN  YL+++++ + +     DEV F L  S++S  
Sbjct: 296 ANNPEQEEAEEIVDVNYQGEELEIGFNVAYLIDVMNALKT-----DEVKFNLSDSSASAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    +D+ N+      A YV+MPMR+
Sbjct: 351 I----EDATNS-----TALYVIMPMRL 368


>gi|295095339|emb|CBK84429.1| DNA polymerase III, beta subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 366

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  +
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGDSLPNH-SVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|289662283|ref|ZP_06483864.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667648|ref|ZP_06488723.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 366

 Score =  218 bits (556), Expect = 9e-55,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|261341639|ref|ZP_05969497.1| hypothetical protein ENTCAN_08107 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315996|gb|EFC54934.1| DNA polymerase III, beta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  +
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGDSLPNH-SVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|21240776|ref|NP_640358.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78045558|ref|YP_361733.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926218|ref|ZP_08187576.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118]
 gi|21106040|gb|AAM34894.1| DNA polymerase III beta chain [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78033988|emb|CAJ21633.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543400|gb|EGD14825.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118]
          Length = 366

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|238797844|ref|ZP_04641336.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969]
 gi|238718260|gb|EEQ10084.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969]
          Length = 366

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSDVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDGASQ-------AAAYVVMPMRL 366


>gi|146309669|ref|YP_001174743.1| DNA polymerase III subunit beta [Enterobacter sp. 638]
 gi|145316545|gb|ABP58692.1| DNA polymerase III, beta subunit [Enterobacter sp. 638]
          Length = 366

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P  +FP
Sbjct: 61  QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRILVRSGRSRFSLSTLPAIDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGVTLPNH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|163802134|ref|ZP_02196029.1| DNA polymerase III subunit beta [Vibrio sp. AND4]
 gi|159173939|gb|EDP58749.1| DNA polymerase III subunit beta [Vibrio sp. AND4]
          Length = 366

 Score =  218 bits (556), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +    S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSSRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  S L++LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQSDLRSLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK + E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGIQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       D+V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEILDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DKVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|330827702|ref|YP_004390654.1| DNA polymerase III subunit beta [Aeromonas veronii B565]
 gi|328802838|gb|AEB48037.1| DNA polymerase III, beta subunit [Aeromonas veronii B565]
          Length = 367

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 130/388 (33%), Positives = 219/388 (56%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + R  +L  L      +  + T+P+  +VLL  ++GLL +  +  E+E+ G +   
Sbjct: 1   MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            AS D  G  TV A  L DI R L +GA+I    E   G  + I  G S F L + P +E
Sbjct: 61  GASED--GRTTVPARKLLDICRGLPEGAEIRLNTE---GERLIIRSGRSRFNLSTLPATE 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+ ++ E V  F+++   LK L++ T F+MA++++RYYLNG+ F    E   L  VATD
Sbjct: 116 YPNIEDWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFE--SEGHGLRTVATD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    ++V +      +I+PRK V E++R+L ++D  V++ +  S +   ++    
Sbjct: 174 GHRLATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG FP+++ VIP ++DK L     +LRQA  R +I+S+ + + V+L+L  + L +
Sbjct: 234 TSKLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M+I FN  Y+L++++ +       D++   L  S SS 
Sbjct: 294 TANNPEQEEAEELLDVQYAAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I    +D ++      +A YV+MPMRI
Sbjct: 349 II----EDFEHQ-----DAQYVVMPMRI 367


>gi|212712613|ref|ZP_03320741.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM
           30120]
 gi|212684829|gb|EEB44357.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM
           30120]
          Length = 366

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LL   +G L++  +  E+E+   +P +
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLHVKEGALQLTGTDLEMEMMANVPLT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I     ++    + +  G S F L + P ++FP
Sbjct: 61  REHEIGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    E   L  V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFET--EGNMLRTVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMDIGQELPSH-SVIVPRKGVMELMRLLDGGDALLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S+ V     +F  D+ +S   +
Sbjct: 295 NNPEQEEAEEIVDVNYQGGEMEIGFNVSYILDVLNALKSENV----TLFLTDAVSS---V 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 348 QIEDSASR-------SAVYVVMPMRL 366


>gi|54307246|ref|YP_128266.1| DNA polymerase III subunit beta [Photobacterium profundum SS9]
 gi|46911666|emb|CAG18464.1| Putative DNA polymerase III, beta chain [Photobacterium profundum
           SS9]
          Length = 366

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  +G L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L DGA+I+   E   G  + I  G S + L + P ++FP
Sbjct: 61  ADFEVGAVTVPSRKFLDICRGLPDGAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    +  L++ T F+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIEDWQSDVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D+ AQ      IIVPRK V E++R+L + ++ V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDL-AQELTTKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K +  +C  LR+A  R +I+S+ + + V+++LS  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+S  +
Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D  N++     A YV+MP+R+
Sbjct: 350 ----EDCANDE-----AMYVVMPIRL 366


>gi|22127980|ref|NP_671403.1| DNA polymerase III subunit beta [Yersinia pestis KIM 10]
 gi|45443727|ref|NP_995266.1| DNA polymerase III subunit beta [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51598226|ref|YP_072417.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP
           32953]
 gi|108810132|ref|YP_654048.1| DNA polymerase III subunit beta [Yersinia pestis Antiqua]
 gi|108814114|ref|YP_649881.1| DNA polymerase III subunit beta [Yersinia pestis Nepal516]
 gi|150260969|ref|ZP_01917697.1| DNA polymerase III, beta subunit protein [Yersinia pestis
           CA88-4125]
 gi|153950603|ref|YP_001403094.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP
           31758]
 gi|162419235|ref|YP_001608447.1| DNA polymerase III subunit beta [Yersinia pestis Angola]
 gi|165926167|ref|ZP_02221999.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936833|ref|ZP_02225399.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009556|ref|ZP_02230454.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213164|ref|ZP_02239199.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401667|ref|ZP_02307161.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422858|ref|ZP_02314611.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425558|ref|ZP_02317311.1| DNA polymerase III, beta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470925|ref|ZP_02335629.1| DNA polymerase III, beta subunit [Yersinia pestis FV-1]
 gi|170022264|ref|YP_001718769.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis YPIII]
 gi|186893346|ref|YP_001870458.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis PB1/+]
 gi|218931073|ref|YP_002348948.1| DNA polymerase III subunit beta [Yersinia pestis CO92]
 gi|229839803|ref|ZP_04459962.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229841888|ref|ZP_04462044.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229896765|ref|ZP_04511928.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A]
 gi|229904653|ref|ZP_04519764.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
 gi|270488364|ref|ZP_06205438.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27]
 gi|294505624|ref|YP_003569686.1| DNA polymerase III subunit beta [Yersinia pestis Z176003]
 gi|21961125|gb|AAM87654.1|AE014012_11 DNA polymerase III, beta-subunit [Yersinia pestis KIM 10]
 gi|45438597|gb|AAS64143.1| DNA polymerase III, beta subunit protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591508|emb|CAH23180.1| DNA polymerase III, beta subunit protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777762|gb|ABG20281.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
 gi|108782045|gb|ABG16103.1| DNA polymerase III, beta subunit [Yersinia pestis Antiqua]
 gi|115349684|emb|CAL22665.1| DNA polymerase III, beta subunit protein [Yersinia pestis CO92]
 gi|149290377|gb|EDM40454.1| DNA polymerase III, beta subunit protein [Yersinia pestis
           CA88-4125]
 gi|152962098|gb|ABS49559.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352050|gb|ABX85998.1| DNA polymerase III, beta subunit [Yersinia pestis Angola]
 gi|165915075|gb|EDR33686.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922027|gb|EDR39204.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991478|gb|EDR43779.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205462|gb|EDR49942.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166958250|gb|EDR55271.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049049|gb|EDR60457.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055572|gb|EDR65365.1| DNA polymerase III, beta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748798|gb|ACA66316.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186696372|gb|ACC87001.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678771|gb|EEO74876.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
 gi|229691227|gb|EEO83280.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696169|gb|EEO86216.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700203|gb|EEO88239.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A]
 gi|262363788|gb|ACY60509.1| DNA polymerase III subunit beta [Yersinia pestis D106004]
 gi|262367725|gb|ACY64282.1| DNA polymerase III subunit beta [Yersinia pestis D182038]
 gi|270336868|gb|EFA47645.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27]
 gi|294356083|gb|ADE66424.1| DNA polymerase III subunit beta [Yersinia pestis Z176003]
 gi|320017426|gb|ADW00998.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 366

 Score =  218 bits (555), Expect = 1e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +DS +       A YV+MPMR+
Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366


>gi|294665123|ref|ZP_06730426.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605124|gb|EFF48472.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 366

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 125/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|329297782|ref|ZP_08255118.1| DNA polymerase III subunit beta [Plautia stali symbiont]
          Length = 366

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ N+G L +  +  E+E+   +  +
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L +GA+IS   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEPGATTVPARKFLDICRGLPEGAEISLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   ++ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMP-VGQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V++ ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVSYSGTELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S         A YV+MPMR+
Sbjct: 348 QIEDVASP-------AAAYVVMPMRL 366


>gi|94502202|ref|ZP_01308697.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65]
 gi|94425663|gb|EAT10676.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65]
          Length = 367

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           MK+T+ R  +L+ L     ++ER+ T+PV  +VLL+     L +  +  E+E+ G A   
Sbjct: 1   MKLTITREALLKPLQLVAGVVERRQTLPVLSNVLLEVKGDQLSLTGTDLELELIGSATLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ITV A  L DI + L D + I   +++    +V +  G S F L S P +EFP
Sbjct: 61  EPGVDGAITVPAKKLMDICKSLPDQSTIEISQDDH---KVQLQTGRSKFVLSSLPANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E      +  + L+ +++RT FAMA +++RYYLNG+   +  ++L+  AVATDGH
Sbjct: 118 NIDDIEAQAQVMVPQTQLRRIIDRTAFAMAQQDVRYYLNGMLIEVKPDELR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   V +   IA    +IVPRKAV E+ ++L   +SSV++SLS + +   +   + + 
Sbjct: 176 RLATCGVPVELDIADRMQVIVPRKAVLELAKLLMDPESSVELSLSNNHVRAKVGDYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ VIP + +K L  +   LRQ   R +I+S+ + + V+L L +D L +  
Sbjct: 236 KLVDGKFPDYERVIPRNGNKTLIADRQALRQVFQRTAILSNEKYRGVRLLLENDNLQVVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A ES+ V +    ++I FN  YL +++  +      DD  +   D+++S+V  
Sbjct: 296 NNPEQEQAEESIGVEFQGEMLEIGFNVSYLQDVLSVLDG----DDMKMTLADANSSAVME 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  DS           YV+MPMR+
Sbjct: 352 EVEGGDS----------LYVVMPMRL 367


>gi|320157815|ref|YP_004190194.1| DNA polymerase III subunit beta [Vibrio vulnificus MO6-24/O]
 gi|319933127|gb|ADV87991.1| DNA polymerase III beta subunit [Vibrio vulnificus MO6-24/O]
          Length = 366

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L      +  + T+P+  ++L+   +G L + A+  E+E+   +   
Sbjct: 1   MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       ++V   +  +N+S  +
Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|291615642|ref|YP_003518384.1| DnaN [Pantoea ananatis LMG 20103]
 gi|291150672|gb|ADD75256.1| DnaN [Pantoea ananatis LMG 20103]
          Length = 407

 Score =  218 bits (554), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q N+G L +  +  E+E+   +   
Sbjct: 42  MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 101

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L +GA+I+   E E    + +  G S F L + P S+FP
Sbjct: 102 QPHETGATTVPARKFLDICRGLPEGAEINVTLEGE---RMLVRSGRSRFSLSTLPASDFP 158

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 159 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 216

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   D+ ++V +  S I  ++     + 
Sbjct: 217 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 275

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 276 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 335

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 336 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 388

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S         A YV+MPMR+
Sbjct: 389 QIEDVVSP-------AAAYVVMPMRL 407


>gi|327395908|dbj|BAK13330.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis AJ13355]
          Length = 366

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++L+Q N+G L +  +  E+E+   +  +
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L +GA+I+   E E    + +  G S F L + P S+FP
Sbjct: 61  QPHETGATTVPARKFLDICRGLPEGAEINVTLEGE---RMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   D+ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKCENV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S         A YV+MPMR+
Sbjct: 348 QIEDVVSP-------AAAYVVMPMRL 366


>gi|145597326|ref|YP_001161401.1| DNA polymerase III subunit beta [Yersinia pestis Pestoides F]
 gi|145209022|gb|ABP38429.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides F]
          Length = 366

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  ++V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKCEDV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDSASQ-------VAAYVVMPMRL 366


>gi|27364432|ref|NP_759960.1| DNA polymerase III subunit beta [Vibrio vulnificus CMCP6]
 gi|27360551|gb|AAO09487.1| DNA polymerase III, beta subunit [Vibrio vulnificus CMCP6]
          Length = 366

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L      +  + T+P+  ++L+   +G L + A+  E+E+   +   
Sbjct: 1   MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFIDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIEGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       ++V   +  +N+S  +
Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|238754005|ref|ZP_04615364.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473]
 gi|238707757|gb|EEQ00116.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473]
          Length = 366

 Score =  217 bits (553), Expect = 2e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFMLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNTLKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +DS +       A YV+MPMR+
Sbjct: 350 ----EDSASQA-----AAYVVMPMRL 366


>gi|145297126|ref|YP_001139967.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849898|gb|ABO88219.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 367

 Score =  217 bits (552), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  +L  L      +  + T+P+  +VLL  + GLL +  +  E+E+ G +  +
Sbjct: 1   MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVYLN 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI R L +GA I    E   G  + I  G S F L + P SE+P
Sbjct: 61  NESQDGRTTVPARKLLDICRGLPEGADIRLNTE---GERLIIRSGRSRFNLSTLPASEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E V  F++    LK L++ T F+MA++++RYYLNG+ F    E   L  VATDGH
Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFE--SEGHGLRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    ++V +      +I+PRK V E++R+L ++D  V++ +  S +   ++    + 
Sbjct: 176 RLATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+++ VIP ++DK L     +LRQA  R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       D++   L  S SS  I
Sbjct: 296 NNPEQEEAEELLDVQYEASEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D D +       +A YV+MPMRI
Sbjct: 351 --EDFDHQ-------DAQYVVMPMRI 367


>gi|262273131|ref|ZP_06050948.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886]
 gi|262222887|gb|EEY74195.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886]
          Length = 366

 Score =  216 bits (551), Expect = 3e-54,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R   L+ L      +  + T+P+  ++LL+   G L +  +  E+E+   +P  
Sbjct: 1   MKFTVTRDQFLKPLQQVSGALGGRPTLPILGNILLKVESGQLSMTCTDLEVELIANLPLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G++TV +    DI R L D A ISF  E   G    I  G S F L + P ++FP
Sbjct: 61  SEAQEGAVTVPSRKFLDICRGLPDSASISFSLE---GDRAVIRSGRSRFTLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    L+ L+E T F+MA +++RY+LNG+      E   L +VATDGH
Sbjct: 118 NIEDWQSTVEFTLPQGKLRQLMESTAFSMANQDVRYFLNGMLLET--EGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV    +  ++A    +IVPRK V E++R+L + D+ V + +  + I   +     + 
Sbjct: 176 RMAVGTTLLDNELAAQ-QVIVPRKGVTELMRMLDNPDAPVTIQIGSANIRALVNQFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K +   C +LRQA  R +I+S+ + + V+L+LS+ +L ++ 
Sbjct: 235 KLVDGRFPDYRRVLPQSSNKIMEAGCDDLRQAFSRAAILSNEKFRGVRLNLSAGQLRISA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A E ++V Y+   ++I FN  Y+L++++ + S     ++V F +    +S  +
Sbjct: 295 HNPEQEEAEEFVDVNYDGDDLEIGFNVSYVLDVLNTLKS-----EQVRFSMTDGTASTLV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +  NN D    A YV+MP+R+
Sbjct: 350 -----EDCNNDD----AMYVVMPIRL 366


>gi|90413731|ref|ZP_01221719.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK]
 gi|90325200|gb|EAS41697.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK]
          Length = 366

 Score =  216 bits (551), Expect = 4e-54,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  +G L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L D A+I+   E   G  + I  G S + L + P ++FP
Sbjct: 61  ADFEIGAVTVPSRKFLDICRGLPDSAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    +  L++ T F+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D+  ++A    IIVPRK V E++R+L + ++ V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDLAQELAT-KQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K +  +C  LR+A  R +I+S+ + + V+++LS  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+S  +
Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D  N++     A YV+MP+R+
Sbjct: 350 ----EDCANDE-----AMYVVMPIRL 366


>gi|285016823|ref|YP_003374534.1| DNA polymerase III subunit beta protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472041|emb|CBA14548.1| probable dna polymerase III subunit beta protein [Xanthomonas
           albilineans]
          Length = 366

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 215/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  + L+Q + G L +  +  E+E+   I   
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVHGGQLSLTGTDLEVEMVSRIAVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L++IVR L DG++++    N+   ++ +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFEIVRALPDGSKVTVSLSND---KITVQTGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F ++++ L+ C VATDGHR
Sbjct: 118 VDEVETTERVVVQEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDKTLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         IIVPRK V E+ R+L   D  V++ +  S + +    ++ + +
Sbjct: 176 LALCETELENAGGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRNDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++++   LR A+ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYETVIPIGADREVKLDREILRAALQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      ++ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEVEADTKVSDLAIGFNVNYLLDALSALR-----EEFVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + +   + +V+MP+R+
Sbjct: 351 ---------EASSARSRHVVMPLRL 366


>gi|166709897|ref|ZP_02241104.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 366

 Score =  216 bits (550), Expect = 5e-54,   Method: Compositional matrix adjust.
 Identities = 124/385 (32%), Positives = 217/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++    ++ G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTI---SQTGDKVTVQAGRSRFTLVTLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+ C VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR-C-VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ V+P   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVMPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  S+ ++       +V+MP+R+
Sbjct: 351 --EASSEKSR-------HVVMPLRL 366


>gi|87121028|ref|ZP_01076920.1| DNA polymerase III, beta chain [Marinomonas sp. MED121]
 gi|86163866|gb|EAQ65139.1| DNA polymerase III, beta chain [Marinomonas sp. MED121]
          Length = 365

 Score =  216 bits (549), Expect = 6e-54,   Method: Compositional matrix adjust.
 Identities = 137/388 (35%), Positives = 217/388 (55%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L+ L     ++ERK T+PV  +VLL+  D  L +  S  E+E+ G I   
Sbjct: 1   MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLLEVKDNELTLTGSDLEVELVGHI--Q 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +D C  G ITV A  L DI + L D A I    ++   T   I  G S F L + P  EF
Sbjct: 59  LDECQEGRITVPARKLMDICKSLPDSAVIELSVDD---TRAIIRSGRSRFTLSTLPADEF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +   S  +A + ++ L+ERT FAMA +++RYYLNG+ F +   D +L  V+TDG
Sbjct: 116 PNIQDMQGDLSVVVAQNSVRRLIERTGFAMANQDVRYYLNGMLFEV--ADGQLRVVSTDG 173

Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRLA A  D  AQ++  +  +IVPRK V E+ R+LS  D +V++ +  + I   +     
Sbjct: 174 HRLATAIED--AQVSGDLTQVIVPRKGVLELNRLLSDTDETVELQIGANHIRAKVADYIF 231

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L++G+FP+Y  VIP +NDK +  +   LRQ   R SI+S+ + + V+L L++  L +
Sbjct: 232 TSKLVEGKFPDYHRVIPRNNDKIVIADRLELRQVFLRASILSNEKYRGVRLILTNGMLQV 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +NP+  +A ES+ V Y    +++ FN  YLL+++  ++S      EV   L+ + +S 
Sbjct: 292 FANNPEQEEAEESVLVQYQGDDLEVGFNVSYLLDVLGVVNS-----QEVRISLNDATASA 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D  +         A YV+MPMR+
Sbjct: 347 LVEEADSHA---------AQYVVMPMRL 365


>gi|330813296|ref|YP_004357535.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486391|gb|AEA80796.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 371

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 132/388 (34%), Positives = 222/388 (57%), Gaps = 21/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R  IL+ L H   ++E+KNT+P+  +VL++A D  ++I A+  +I IT  I A 
Sbjct: 1   MEIKIDRDIILKCLNHIQGVVEKKNTLPILANVLIEAFDNKIQISATDLDIIITEKIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T +A +LYD++RKL  G+ I    +N+    + +  G S+F L   P SEFP 
Sbjct: 61  VIKEGSTTTTAQVLYDLIRKLPAGSGIHLNLQND--KRLKLISGKSDFNLTCLPASEFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
            ++       E+ S  L  L+ +T F+++ +E R+YLNGI+ H  EED  KL AVATDGH
Sbjct: 119 LEDSIESDYLEVKSKYLLKLLNKTKFSISNDETRHYLNGIYLHKPEEDNSKLIAVATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RL+  ++  V +  K   +I+P+K + EI+ I+S + D+ +K+    S+I   I+ + + 
Sbjct: 179 RLSKTQI-TVDENKKFHPVILPKKTIFEIINIISDEPDTPIKILSVRSKIKFIIKDIVLI 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y+ VIP    KE+  N  +   AVDR+  +S+ R   +K+++ + K+   
Sbjct: 238 SKVIDGKFPDYEKVIPSDTRKEVLANVADFISAVDRIKSLSADRKGVIKINIENHKIRFF 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G+ IE ++  Y    ++I FN  YL++I + I      D+ +  +   + S + 
Sbjct: 298 INDTSSGEGIEEISAVYEGDNLEIGFNSGYLMDIANCIQ-----DENITLKPKDATSPII 352

Query: 359 IRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
           I+  KD DS           YV+MPMR+
Sbjct: 353 IKDQKDPDST----------YVVMPMRV 370


>gi|257097208|pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant
 gi|257097209|pdb|3F1V|B Chain B, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant
          Length = 366

 Score =  215 bits (548), Expect = 8e-54,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA     YYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAAAAAAYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|253686411|ref|YP_003015601.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251752989|gb|ACT11065.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 366

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q  +  L +  +  E+E+   +   
Sbjct: 1   MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEDALSLTGTDLEMEMVAKVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +  V Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMP-VGQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L L  ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +  + V       RL  ++S   +
Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKCEGV-------RLLLTDSVSSV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+        A YV+MPMR+
Sbjct: 348 QIEDSASR-------AAAYVVMPMRL 366


>gi|330970326|gb|EGH70392.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 367

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 218/389 (56%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPSN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|66043273|ref|YP_233114.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           B728a]
 gi|302185841|ref|ZP_07262514.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           642]
 gi|63253980|gb|AAY35076.1| DNA polymerase III, beta chain [Pseudomonas syringae pv. syringae
           B728a]
 gi|330976403|gb|EGH76460.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 367

 Score =  215 bits (547), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 218/389 (56%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|90415377|ref|ZP_01223311.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332700|gb|EAS47870.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 366

 Score =  214 bits (546), Expect = 1e-53,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           MK ++ R  +L  L     ++ER+ T+P+  +VLL  +   L +  +  E+EI G A   
Sbjct: 1   MKFSLSREALLNPLQLVVGVVERRQTLPILSNVLLTLDGSRLAVTGTDLEVEIIGHADVV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G +TVSA    DI R L +GA I F   +    +  +  G S F L + P +EFP
Sbjct: 61  SADEAGEVTVSARKFLDICRSLPEGANIKFSSSD---GKAQVVSGRSRFTLATLPANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    E    F++A  +LKNL++ T FAMA +++RYYLNG+ + ++    KL AVATDGH
Sbjct: 118 SVDNGENNIQFDIAGVILKNLIDATSFAMAQQDVRYYLNGMLWEVSAN--KLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+ + +   +I ++   I+PRK V E+ R+++  +  V+V++  + I ++      + 
Sbjct: 176 RMALCDAECNIEIGELTKAILPRKGVIELSRLVAD-EGVVRVAMGSNHIRVDGSDYCFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG +P+Y  V+P   DK +  N   L+QA  R +I+S+ + + V++ LS+  + M  
Sbjct: 235 KLVDGAYPDYDRVLPKGGDKLVEGNRAELKQAFGRTAILSNEKYRGVRIMLSNGAIKMVA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  YLL++++ +       D V   L  S+SS  +
Sbjct: 295 NNPEQEEAEEEVGVDYAGDELEIGFNVSYLLDVLNVLKG-----DGVRLTLSDSSSSALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+ +      +A YV+MPMR+
Sbjct: 350 ----EDAADG-----SAVYVVMPMRL 366


>gi|163751708|ref|ZP_02158927.1| DNA polymerase III, beta subunit [Shewanella benthica KT99]
 gi|161328447|gb|EDP99603.1| DNA polymerase III, beta subunit [Shewanella benthica KT99]
          Length = 366

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 218/387 (56%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHTLKMTGTDLEVELVGQVQLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV  G  T+ A    DIV+ L D  +I    +EN L     +  G S F L + P  E+
Sbjct: 61  GDVEEGRTTIPAKKFLDIVKSLPDQVEIKIEQQENRLL----LRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E    F +   +LK+L++ T F+MA +++RYYLNG+    +   L+  A+ATDG
Sbjct: 117 PNVEAFESDIEFTIKQGILKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   I A + K   +IVPRK V E+ R+   +D  V +++ ++ I     S  ++
Sbjct: 175 HRLALSHRKIEANLPK-KQVIVPRKGVVELQRLYEGEDLDVTIAIGDNAIRATTSSAVLT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ L +T
Sbjct: 234 SKLIDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y+  P++I FN  YLL++++N+ S     DEV   L   NSS  
Sbjct: 294 ANNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DEVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    ++         N+ YV+MPMR+
Sbjct: 349 IENHIEE---------NSMYVVMPMRL 366


>gi|237806778|ref|YP_002891218.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187]
 gi|237499039|gb|ACQ91632.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187]
          Length = 367

 Score =  214 bits (546), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+ ++ R  +L  L      I  + T+P+  +VLL   +  L +  +  E+E+ G +P A
Sbjct: 1   MQFSISRDSLLRPLQLVSGSIGGRPTLPILSNVLLNVTEQRLSLTGTDLEVEMIGLVPLA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSIT  A  L DI R L DGAQ+ F  E   G  + +  G S + L + P +++P
Sbjct: 61  GAVAVGSITTPARKLLDICRGLPDGAQLDFVLE---GERLILRSGRSRYSLSTLPAADYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E   V  F+++   LK L+E T F+MA++++R+YLNG+ F  + + L+   V TDGH
Sbjct: 118 NIEEWNSVLEFDISQQELKRLMEATQFSMASQDVRFYLNGMLFETSGQGLR--TVGTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    +++ +      +I+PRK V E+ R+L + D ++++ +  + +    E    + 
Sbjct: 176 RLATCRREVLNEPQSDHQVILPRKGVLELARLLENDDRTIRLQIGLNNLRAEAEGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V P  +DK L      L+QA  R +I+S+ + + V+L L+++ L +T 
Sbjct: 236 KLVDGRFPDYRRVFPRQSDKILIAERELLKQAFSRAAILSNEKFRGVRLHLTTNLLHITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   +++ FN  Y+L++++ +       ++V + L  +NSS  +
Sbjct: 296 NNPEQEEAEELIDVQYDGPELEVGFNVSYVLDVLNALKC-----EQVKWYLTDANSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+ N+     +A YV+MPMR+
Sbjct: 351 ----EDASND-----DAQYVVMPMRL 367


>gi|92112138|ref|YP_572066.1| DNA polymerase III subunit beta [Chromohalobacter salexigens DSM
           3043]
 gi|91795228|gb|ABE57367.1| DNA polymerase III, beta subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 367

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 205/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           M+ T+ R  +L  L     ++ER+ T+PV  +VLLQ  D  L +  +  E+E+ G   P 
Sbjct: 1   MRFTITREALLRPLSLVAGVVERRQTLPVLSNVLLQVQDSQLALTGTDLEVELIGRTTPH 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  GS TV A  L DI + L +   I+F  E   G  + +  G S F L + P +EFP
Sbjct: 61  HVDEPGSATVPARKLMDICKSLPEQTDITFTLEE--GRAI-LRAGRSRFTLSTLPVAEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +   +  LA   LK+L++ T FAMA +++RYYLNG+        ++   VATDGH
Sbjct: 118 NIEGSQSDTTLTLARGTLKHLIDATSFAMAQQDVRYYLNGMLLEFGHHLVR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV       ++     +IVPRK + E+ R+L   D  V++++  + +       + + 
Sbjct: 176 RLAVCARSADVEVEPSQKLIVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y  VIP   DK +      LRQ + R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGKFPDYDRVIPRGGDKVVIAERGELRQVLSRTAILSNEKYRGVRLNLEENNLRVTA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ + Y+   +++ FN  YL++++  + +     D V   L   NSS  +
Sbjct: 296 NNPEQEEAEENVAIEYDGGALEVGFNVGYLVDVLGVLDA-----DRVQMTLSDPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     +    +A YV+MPMR+
Sbjct: 351 ---------EEPGGGDAMYVVMPMRL 367


>gi|300112747|ref|YP_003759322.1| DNA polymerase III subunit beta [Nitrosococcus watsonii C-113]
 gi|299538684|gb|ADJ27001.1| DNA polymerase III, beta subunit [Nitrosococcus watsonii C-113]
          Length = 367

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 135/388 (34%), Positives = 218/388 (56%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R +I+  L   C ++ER++T+P+  +VLL   D  L + A+  EIEI  A    
Sbjct: 1   MRFSIKREEIVRHLVTICGVVERRHTLPILSNVLLSVKDSRLSLMATDLEIEIKTAFDIL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
               G IT+SA    +I R L   + + + +KE +      I  G S F L + P  +FP
Sbjct: 61  SPEEGKITISARKFLEICRALPSQSALEAQYKEGQF----YIHSGRSRFTLSTLPAEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    + V   EL  + LK L+ RT F MA +++RYYLNG+   + EE +   AVATDGH
Sbjct: 117 SIDSIDAVAELELTQAELKKLLYRTVFCMAHQDVRYYLNGLLLELTEEAIH--AVATDGH 174

Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLA+A +   +Q A      I+PRKA+ E++R+L   + SV++    +++    + LS S
Sbjct: 175 RLALASLAKGSQQAGTEIQSIIPRKAILELVRLLEESNDSVRLKFGTNQMRAEFQGLSFS 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+++ + + V L LS+ KL   
Sbjct: 235 TKLIDGQFPDYKRVIPVGCEKQFVADREKFKQALVRVNILTNDKYRGVHLHLSALKLQAI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G A E +++ Y    ++I FN  YL++++  I ++E+   ++ F   ++NSS  
Sbjct: 295 VTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLSIIDTEEI---KLTF--TNANSSCL 349

Query: 359 IRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
           I   DK DSK          YV+MPMR+
Sbjct: 350 ITPIDKADSK----------YVVMPMRL 367


>gi|262189752|ref|ZP_06048107.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93]
 gi|262034366|gb|EEY52751.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93]
          Length = 353

 Score =  214 bits (545), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 111/342 (32%), Positives = 199/342 (58%), Gaps = 7/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +NP+  +A E ++V +   P++I FN  Y+L++++ +  D V
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRCDNV 336


>gi|254435596|ref|ZP_05049103.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27]
 gi|207088707|gb|EDZ65979.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27]
          Length = 377

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R +I+  L   C ++ER++T+P+  +VLL   D  L + A+  EIEI  A+   
Sbjct: 11  MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 70

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
               G +TVSA    +I R L  G+ + + +KE +      I  G S F L + P  +FP
Sbjct: 71  SSEEGKVTVSARKFLEICRALPSGSALEAQYKEGQF----YIHSGRSRFTLSTLPAEDFP 126

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    + V   EL  + LK L+ RT F MA +++RYYLNG+   + EE +   AVATDGH
Sbjct: 127 SIDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIH--AVATDGH 184

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLA+A +   A Q       I+PRKA+ E++R+L      V++    +++    + LS S
Sbjct: 185 RLALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFS 244

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+++ + + V L LS  KL   
Sbjct: 245 TKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAI 304

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G A E +++ Y    ++I FN  YL+++++ I + EV       RL  +N+S  
Sbjct: 305 VTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEV-------RLTFTNASSS 357

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 D+ ++K       YV+MPMR+
Sbjct: 358 CLITPIDASDSK-------YVVMPMRL 377


>gi|15988190|pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
 gi|16974833|pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
 gi|16974834|pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
          Length = 366

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E E    + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGE---RMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +  S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAAASNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D  S+       +A YV+MPMR+
Sbjct: 350 --EDAASQ-------SAAYVVMPMRL 366


>gi|209693644|ref|YP_002261572.1| DNA polymerase III subunit beta [Aliivibrio salmonicida LFI1238]
 gi|208007595|emb|CAQ77695.1| DNA polymerase III subunit beta-subunit [Aliivibrio salmonicida
           LFI1238]
          Length = 369

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 224/386 (58%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + ++P+  ++LLQ  +G L + A+  E+E+   I   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPSLPIFGNILLQVENGQLSMTATDLEVELISNILLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ITV +    DI R L DGA I+   E   G  V +  G S F L + P  +FP
Sbjct: 61  GDFEAGAITVPSRKFLDICRGLPDGANITIVLE---GDRVLVRSGRSRFTLATLPAQDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +      L+ + L+ L+E T F+MA +++RYYLNG+ F       +  +VATDGH
Sbjct: 118 NIEGWQSEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGTIFR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  + + +++ +   +I+PRK + E++R+L S + SV +    S +   + +   + 
Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K L  +C  LRQA  R +I+S+ + + V+++L+++++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L+++D +++ +   + V   + ++N+S  +
Sbjct: 295 NNPEQEEAEEILDVDFQGEDIEIGFNVSYVLDVLDVLNTLKC--ERVRISMTTANASALV 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D  N++     A YV+MP+R+
Sbjct: 353 ----EDCANDE-----AQYVVMPIRL 369


>gi|24371609|ref|NP_715651.1| DNA polymerase III, beta subunit [Shewanella oneidensis MR-1]
 gi|24345359|gb|AAN53096.1|AE015452_9 DNA polymerase III, beta subunit [Shewanella oneidensis MR-1]
          Length = 366

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 223/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK+L++ T F+MA +++RYYLNG+   I  E   L A+ATDGH
Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLL--IETEGNMLRAIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L + D  + +S+ ++ I     +   + 
Sbjct: 176 RLALSHRVIEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  + +QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN  P++I FN  YLL++++N+ SD+V     +  +D ++S++  
Sbjct: 295 NNPEQEEAEEIIDVDYNNLPLEIGFNVSYLLDVLNNLKSDDV----RITLIDGNSSALLE 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++DS           YV+MPMR+
Sbjct: 351 NHLEEDS----------MYVVMPMRL 366


>gi|77163563|ref|YP_342088.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707]
 gi|76881877|gb|ABA56558.1| DNA polymerase III, beta subunit [Nitrosococcus oceani ATCC 19707]
          Length = 367

 Score =  214 bits (544), Expect = 2e-53,   Method: Compositional matrix adjust.
 Identities = 132/387 (34%), Positives = 213/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R +I+  L   C ++ER++T+P+  +VLL   D  L + A+  EIEI  A+   
Sbjct: 1   MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
               G +TVSA    +I R L  G+ + + +KE +      I  G S F L + P  +FP
Sbjct: 61  SSEEGKVTVSARKFLEICRALPSGSALEAQYKEGQF----YIHSGRSRFTLSTLPAEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    + V   EL  + LK L+ RT F MA +++RYYLNG+   + EE +   AVATDGH
Sbjct: 117 SIDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEESIH--AVATDGH 174

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLA+A +   A Q       I+PRKA+ E++R+L      V++    +++    + LS S
Sbjct: 175 RLALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFS 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+++ + + V L LS  KL   
Sbjct: 235 TKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G A E +++ Y    ++I FN  YL+++++ I + EV       RL  +N+S  
Sbjct: 295 VTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTKEV-------RLTFTNASSS 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 D+ ++K       YV+MPMR+
Sbjct: 348 CLITPIDASDSK-------YVVMPMRL 367


>gi|74316020|ref|YP_313760.1| DNA polymerase III subunit beta [Thiobacillus denitrificans ATCC
           25259]
 gi|74055515|gb|AAZ95955.1| DNA polymerase III, beta chain [Thiobacillus denitrificans ATCC
           25259]
          Length = 367

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 120/384 (31%), Positives = 218/384 (56%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I  ER+ +L  L     ++ER++T+P+  ++LL+   G L + A+  E++++  + A   
Sbjct: 4   IQSERNALLSALSAVVGVVERRHTLPILSNLLLEKKAGTLTLLATDLELQVSTRLEAQGG 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
              +IT++A  L+DIVR L D A +    ++   ++V +S G S F LQ+ P ++FP  +
Sbjct: 64  DDFAITIAARKLFDIVRALPDSASVKLDTKD---SQVVVSAGKSRFTLQTLPAADFPRVE 120

Query: 123 EEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V +   L    LK L++   FAMA+++IRYYLNG+   ++ + L++  VATDGHRL
Sbjct: 121 TGAGVGTVVRLPQKTLKRLLQLVQFAMASQDIRYYLNGMLLVLDGQQLRV--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           + AE  + A       +I+PRK V E+ ++LS  D  V++ +  +++ + +    +  ++
Sbjct: 179 SYAETTLDAP-TDAQEVIIPRKTVIELSKLLSDSDEPVELRIGSNQVTIMLPGTELVTKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG+FP+YQ VIP +  + L+ N   + QA+ R +I+S+ + + V+L +S + L +  +N
Sbjct: 238 VDGKFPDYQRVIPANQPRHLKANRQTVVQALQRAAILSNEKFRGVRLVMSDNTLGIVCNN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A + + V YN  P+D+ FN  YLL+ +  +++     DE+   L  +NSS+ +  
Sbjct: 298 NEQEEAADEIEVSYNGDPLDVGFNVTYLLDGLGAVNT-----DEITLSLGDANSSMLL-- 350

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                    + +    YV+MPMRI
Sbjct: 351 -------TSEGEPGFKYVVMPMRI 367


>gi|71736736|ref|YP_272317.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557289|gb|AAZ36500.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321689|gb|EFW77788.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331109|gb|EFW87080.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881907|gb|EGH16056.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330952331|gb|EGH52591.1| DNA polymerase III subunit beta [Pseudomonas syringae Cit 7]
 gi|330961506|gb|EGH61766.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           maculicola str. ES4326]
 gi|330987020|gb|EGH85123.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 367

 Score =  214 bits (544), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|126172259|ref|YP_001048408.1| DNA polymerase III subunit beta [Shewanella baltica OS155]
 gi|152998557|ref|YP_001364238.1| DNA polymerase III subunit beta [Shewanella baltica OS185]
 gi|160873128|ref|YP_001552444.1| DNA polymerase III subunit beta [Shewanella baltica OS195]
 gi|217971218|ref|YP_002355969.1| DNA polymerase III subunit beta [Shewanella baltica OS223]
 gi|304412706|ref|ZP_07394309.1| DNA polymerase III, beta subunit [Shewanella baltica OS183]
 gi|307305829|ref|ZP_07585575.1| DNA polymerase III, beta subunit [Shewanella baltica BA175]
 gi|125995464|gb|ABN59539.1| DNA polymerase III, beta subunit [Shewanella baltica OS155]
 gi|151363175|gb|ABS06175.1| DNA polymerase III, beta subunit [Shewanella baltica OS185]
 gi|160858650|gb|ABX47184.1| DNA polymerase III, beta subunit [Shewanella baltica OS195]
 gi|217496353|gb|ACK44546.1| DNA polymerase III, beta subunit [Shewanella baltica OS223]
 gi|304348916|gb|EFM13331.1| DNA polymerase III, beta subunit [Shewanella baltica OS183]
 gi|306911322|gb|EFN41748.1| DNA polymerase III, beta subunit [Shewanella baltica BA175]
 gi|315265353|gb|ADT92206.1| DNA polymerase III, beta subunit [Shewanella baltica OS678]
          Length = 366

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQVVVH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK++++ T F+MA +++RYYLNG+ F    E   L A+ATDGH
Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFET--EGNVLRAIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L S D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRTIEAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVEYNNQALEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|226942172|ref|YP_002797245.1| DNA polymerase III subunit beta [Azotobacter vinelandii DJ]
 gi|226717099|gb|ACO76270.1| DNA polymerase III, beta chain 1, 2, and 3 protein [Azotobacter
           vinelandii DJ]
          Length = 367

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +P  
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEKQQLSLTGTDLEVELVGRVPLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L DI + L +   I    + +   ++ I  G S F L + P S+FP
Sbjct: 61  ENAEPGEITVPARKLMDICKSLPNDTLIDIRLDEQ---KLLIKAGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   +N   L+  AVATDGH
Sbjct: 118 TAEEGLGSLTFSLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEMNGGVLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLALCSMQSGIEHADRHQVIVPRKGILELARLLTDQDGEVSIVLGQYHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK++  +   LR+A  R +I+S+ + + ++L L+S  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKKVLGDRQLLREAFSRTAILSNEKYRGIRLQLASGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y+   ++I FN  YLL+++  +S+     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVAVDYSGDALEIGFNVSYLLDVLGVMSA-----EQVCLTLSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QEADND---------DSAYVVMPMRL 367


>gi|237801663|ref|ZP_04590124.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024522|gb|EGI04578.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 367

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 218/389 (56%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVMGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V Y+   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYSGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|197334198|ref|YP_002154782.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11]
 gi|197315688|gb|ACH65135.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11]
          Length = 366

 Score =  213 bits (543), Expect = 3e-53,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + ++P+  ++LLQ  +G L + A+  E+E+   I   
Sbjct: 1   MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L D A I+   E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E      L+ + L+ L+E T F+MA +++RYYLNG+ F       +  +VATDGH
Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGNIFR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  + + +++ +   +I+PRK + E++R+L S D SV +    S +   + +   + 
Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPDQSVTLQFGNSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K L  +C  LRQA  R +I+S+ + + V+++L+++++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   + ++N+S  +
Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D  N++     A YV+MP+R+
Sbjct: 350 ----EDCANDE-----AQYVVMPIRL 366


>gi|114561190|ref|YP_748703.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114332483|gb|ABI69865.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 366

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 227/387 (58%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ ++  L++  +  E+E+ G  AI 
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSESSLKLTGTDLEVELVGQAAIH 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             +D+ G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  ++
Sbjct: 61  GDIDI-GRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +E +    F L   VLK++++ T F+MA +++RYYLNG+ F    E   L A+ATDG
Sbjct: 117 PNVEEFQADIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFET--EGNVLRAIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   +   + +   +IVPRK V E+ R+L S D  + +++ ++ I     S   +
Sbjct: 175 HRLALSHRTLDVSLPE-KQVIVPRKGVVEMARLLDSDDQDITIAIGDNAIRAITSSAVFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   +K +  +   L+QA+ R SI+S+ + + V++ L +  L +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGNKVVIASRNQLKQALTRASILSNEKFRGVRIQLETGLLKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y+   ++I FN  YLL++++N++SDEV     +  +D ++S++ 
Sbjct: 294 ANNPEQEEAEEIIDVEYDSDNLEIGFNVSYLLDVLNNLASDEV----RITLIDGNSSALI 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              K++DS           YV+MPMR+
Sbjct: 350 ENHKEEDS----------MYVVMPMRL 366


>gi|88813025|ref|ZP_01128267.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231]
 gi|88789658|gb|EAR20783.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231]
          Length = 366

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 130/385 (33%), Positives = 206/385 (53%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  VER+ +L+ L     ++ER+ T+P+  ++LL A +  L I A+  E+EI     A 
Sbjct: 1   MEFDVERTALLKALQSIIGVVERRQTLPILANILLDAREQRLAITATDLEVEIQAHAQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G  T+ A  L DIVR L + A I     ++    + +    S F L + P  +FP+
Sbjct: 61  LSQAGETTLPARKLMDIVRNLPEHADIHVSTSHD---RIALQLPHSRFTLATLPTKDFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E       EL  S L+ L++RT FAMA +++RYYLNG+   +  E   L AVATDGHR
Sbjct: 118 VEEIGQTQDLELTQSHLRWLIDRTGFAMALQDVRYYLNGLLLEL--EPYCLRAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AEV     + +   +IVPRK + E+LR+L+  D  +++ L ++ I +    +  + +
Sbjct: 176 LALAEVVTELPLTETKQVIVPRKGIQELLRLLTDSDEPLRLELGDNHIRVTWPEVRFTTK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+DG+FP+YQ VIP  N   L+V    LRQA+ R +I+S+  +  V+  L    L +  +
Sbjct: 236 LLDGQFPSYQRVIPKQNGGCLQVERHTLRQALIRAAILSNEHLHGVRFILGGTSLRICSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP   +A E +   Y+    +I FN  YLL+ +  I    V     +F L ++NSS  +R
Sbjct: 296 NPAQEEAEEELTAAYDGEAFEIGFNASYLLDALAAIEESTV----EIF-LTNANSSALLR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G   +            YV+MP+R+
Sbjct: 351 GAGNE---------RCRYVVMPLRL 366


>gi|269103821|ref|ZP_06156518.1| DNA polymerase III beta subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163719|gb|EEZ42215.1| DNA polymerase III beta subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 365

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 220/387 (56%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R  +L+ L      + R  ++P+  ++LLQ  +GLL +  +  E+E+   I   
Sbjct: 1   MKFTLAREQLLKPLQQVSGALGRP-SLPILGNILLQVEEGLLSLTGTDLEVELVAKIVLE 59

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ITV +    DI R L D A IS   E   G    I  G S + L + P S+FP
Sbjct: 60  GEFEAGAITVPSRKFLDICRGLPDSATISVSVE---GDRALIRSGRSRYSLATLPASDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  S L+ L++ T F+MA +++RYYLNG+ F  + + L+   VATDGH
Sbjct: 117 NIDDWQSEVEFELEQSRLRQLIDSTQFSMAHQDVRYYLNGMLFETDGKLLR--TVATDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D    +     II+PRK V E++R+L + ++ V++ +  S +   + +   + 
Sbjct: 175 RMAVCAIDTAYDVPSK-QIILPRKGVLELVRLLDNPEAPVQIQIGGSNLRATVNNFVFTS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +++K +  +C  LR+A  R +I+S+ + + V+++L++ ++ +T 
Sbjct: 234 KLVDGRFPDYRRVLPQNSNKFVTASCDELRKAFSRAAILSNEKFRGVRVNLAAGEMRITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  Y+L++++ +       ++V   L  +N+S  +
Sbjct: 294 NNPEQEEAEEFLDVDYQGEPIEIGFNVSYVLDVLNTLKC-----EQVKMSLTDANASALL 348

Query: 360 RGKDKDSKNNKDNKV-NAFYVLMPMRI 385
                     +DN V +A YV+MP+R+
Sbjct: 349 ----------EDNAVDDAMYVVMPIRL 365


>gi|330890248|gb|EGH22909.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. mori str.
           301020]
          Length = 367

 Score =  213 bits (542), Expect = 4e-53,   Method: Compositional matrix adjust.
 Identities = 127/389 (32%), Positives = 216/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L   A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSSDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|149912067|ref|ZP_01900658.1| DNA polymerase III subunit beta [Moritella sp. PE36]
 gi|149804863|gb|EDM64900.1| DNA polymerase III subunit beta [Moritella sp. PE36]
          Length = 366

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R  +L  L      +  + T+P+  +VLL A +G L +  +  E+E+ G +   
Sbjct: 1   MQFTINREALLRPLQLVSGALGNRPTLPILGNVLLDAKEGKLTLTGTDLEVELIGQVTLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI R L D AQI     N+    + +  G S F L + P +EFP
Sbjct: 61  GEFTEGRTTVPAKKLLDICRGLPDSAQIQVSYAND---RIVVKSGRSRFSLSTLPATEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    FEL    L+ L++ T F+MA++++RYYLNG+ F      L+   VATDGH
Sbjct: 118 NIEDWDNDIEFELLQGSLRRLIDNTQFSMASQDVRYYLNGMLFETEGNILR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAVA  +  A + K   +IVPRK V E++R+L S++  VK+ L  + I         + 
Sbjct: 176 RLAVASCEHDANL-KQQQVIVPRKGVLELVRLLDSEEDMVKIQLGSNNIRAITSGFVFTC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +   L+QA  R +I+S+ + + V+L+++   L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNADKMLISSREELKQAFSRAAILSNEKFRGVRLNMNQGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       +++   L  +NSS  I
Sbjct: 295 NNPEQEEAEELLDVAFAHDELEISFNVSYVLDVLNTLKC-----EKIKISLSDANSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  D          A YV+MPMR+
Sbjct: 350 EDEQSD---------QALYVVMPMRL 366


>gi|254282661|ref|ZP_04957629.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B]
 gi|219678864|gb|EED35213.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B]
          Length = 365

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 128/388 (32%), Positives = 215/388 (55%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M  T+ R  +++ L     ++ER+ T+P+  +VLL+     LE+  +  E+E+ G +  A
Sbjct: 1   MNFTIPRDALIKPLNLVAGVVERRQTLPILSNVLLRVEGNRLELTGTDLEVELLGRVDLA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +G++I+F  ++   T   +  G S F L + P ++FP
Sbjct: 61  EPGEAGEITVPARKLVDICKSLPEGSEINFSVDSGKAT---VKAGRSRFTLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E   S  L  SVLK L++RT FAMA +++RYYLNG+   I    L++  VATDGH
Sbjct: 118 TVESSEGEVSVSLPQSVLKRLIDRTGFAMAQQDVRYYLNGMLLEILGGRLRM--VATDGH 175

Query: 180 RLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+  A+  + A  A   S+I+PRK V E+ R+L   D  V + +  + +       + 
Sbjct: 176 RLALCTAQEPVEAGDA---SVIIPRKGVLELARLLEG-DGPVTLVIGSNHVRAANLQFTF 231

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG+FP Y+ V+P S DK +  +   LRQA  R +I+S+ + + V+L ++ D L +
Sbjct: 232 TSKLVDGKFPEYERVLPKSPDKSVVGDRQTLRQAFTRTAILSNEKYRGVRLKIADDTLEI 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V +   P+++ FN  YLL+++  +      D++V   L  + SS 
Sbjct: 292 TANNPEQEQAEEVVSVEFQGDPLEVGFNVSYLLDVLSVLG-----DEKVRLSLADAASSA 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D           ++ YV+MPMR+
Sbjct: 347 LLEEADGG---------DSLYVVMPMRL 365


>gi|28867245|ref|NP_789864.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968440|ref|ZP_03396583.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384272|ref|ZP_07232690.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063878|ref|ZP_07255419.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           K40]
 gi|302131961|ref|ZP_07257951.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850479|gb|AAO53559.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926728|gb|EEB60280.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|331017724|gb|EGH97780.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 367

 Score =  213 bits (541), Expect = 5e-53,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +  +LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEIGVEYNGEALEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|330876356|gb|EGH10505.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964180|gb|EGH64440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 367

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 216/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEIGVEYNGESLEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|312882234|ref|ZP_07741980.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370078|gb|EFP97584.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 366

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 223/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++RS +L+ L      +  + T+P+  ++LL+  DG+L I A+  E+E+   +   
Sbjct: 1   MKFSIQRSHLLKPLQQVSGALGGRPTLPILGNLLLKVADGMLLITATDLEVELISRVNLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ITV +    DI R L D A I+F  E   G  V I  G S F L + P  +FP
Sbjct: 61  GEFEAGTITVPSRKFLDICRGLPDEAVITFVLE---GDRVQIRSGRSRFSLSTLPAHDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ LVE+T F+MA +++RYYLNG+ F +  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQAELRTLVEKTQFSMANQDVRYYLNGMLFEL--DGTTLSSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+A+V++  + A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAMAQVNLEGEFAQQ-QIIVPRKGVLELVKLLDAPEQKVVLQVGSSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+  +  K L  +C  L+ A  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMSLTPSKTLLADCDQLKHAFSRAAILSNEKFRGVRVNLTDSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  +EV     V   D+++S++  
Sbjct: 295 NNPEQEEAEEILDVNYQGEAIEIGFNVGYVLDVLNTLKCNEV----RVSMTDATSSTLI- 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +DN  +A YV+ P+R+
Sbjct: 350 -------ENAQDN--SAVYVVSPIRL 366


>gi|114045515|ref|YP_736065.1| DNA polymerase III subunit beta [Shewanella sp. MR-7]
 gi|113886957|gb|ABI41008.1| DNA polymerase III, beta subunit [Shewanella sp. MR-7]
          Length = 366

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVVH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK+L++ T F+MA +++RYYLNG+      E   L A+ATDGH
Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L + D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  + +QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN  P++I FN  YLL++++N+ SD+V     +  +D ++S++  
Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKSDDV----RITLIDGNSSALLE 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++DS           YV+MPMR+
Sbjct: 351 NHLEEDS----------MYVVMPMRL 366


>gi|304414286|ref|ZP_07395654.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304283500|gb|EFL91896.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 375

 Score =  212 bits (540), Expect = 7e-53,   Method: Compositional matrix adjust.
 Identities = 132/394 (33%), Positives = 217/394 (55%), Gaps = 28/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++R  +L+ L      +  +  +P+  ++LLQ +D  L +  +  EIE+   I  S
Sbjct: 1   MKFTIKREHLLKPLQQVSGPLSARTALPILANLLLQVSDNTLTLTGTDLEIEMVATIALS 60

Query: 61  VD---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                  GS TV A   +DI R L + A+I+   E +    ++I  G S F L      +
Sbjct: 61  QSHKTETGSTTVPARKFFDICRGLPEDAEITVTLETK---RLSIRSGHSRFSLSILSARD 117

Query: 118 FPSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           FP+  +  +E      ++ + LK L++ T FAMA +++RYYLNG+ F +  E  KLCA+ 
Sbjct: 118 FPNLADLKKEKEVELTVSPAALKCLIDSTQFAMAHQDVRYYLNGMLFEVEGE--KLCAIT 175

Query: 176 TDGHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           TDGHRLAV    I+    AQ  K  S+IVPRKAV E+ R+LS  +  + + +  + I ++
Sbjct: 176 TDGHRLAVCSTSIIQKDTAQELKKYSVIVPRKAVIELARLLSGGEDRLCLQIGSNNIRVH 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +     + +L+DG FP+Y+ V P +  K +  NC  L+QA  R +I+S+ + + V+L +S
Sbjct: 236 LNGFIFTSKLVDGRFPDYKRVFPKNPSKIVIANCEQLKQAFSRAAILSNAKFRGVRLHIS 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + KL +T +NP+  +A E+++V Y    ++I FN  YLL++++ +       D+V   L 
Sbjct: 296 AGKLKITANNPEQEEAEETLDVDYQGEDIEISFNVGYLLDVLNALKC-----DKVKLLLI 350

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S SSV I         N +N++   Y++MPMR+
Sbjct: 351 DSVSSVQI--------ENIENQITT-YIVMPMRL 375


>gi|330500916|ref|YP_004377785.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01]
 gi|328915202|gb|AEB56033.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01]
          Length = 367

 Score =  212 bits (539), Expect = 9e-53,   Method: Compositional matrix adjust.
 Identities = 125/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            D    G ITV A  L DI + L   A I    +++   ++ +  G S F L + P ++F
Sbjct: 61  -DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +E     +F L  + L+ L+ERT FAMA +++RYYLNG+   +    L+  AVATDG
Sbjct: 117 PTVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGLLR--AVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  ++   Q      +IVPRK + E+ R+L+ +D+ V + L +  I  N    + +
Sbjct: 175 HRLAMCSMEASIQQDGKHQVIVPRKGILELARLLTEQDAEVSIVLGQHHIRANTGEFTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L+L+   L + 
Sbjct: 235 SKLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLADGLLKIQ 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + V YN   ++I FN  YLL+++  + +     ++V   L  SNSS  
Sbjct: 295 ANNPEQEEAEEEIVVDYNGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  D D         ++ YV+MPMR+
Sbjct: 350 LQEADND---------DSAYVVMPMRL 367


>gi|257485598|ref|ZP_05639639.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628213|ref|ZP_06461167.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649103|ref|ZP_06480446.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330870076|gb|EGH04785.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|331011886|gb|EGH91942.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 367

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|15595200|ref|NP_064722.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO1]
 gi|107098996|ref|ZP_01362914.1| hypothetical protein PaerPA_01000002 [Pseudomonas aeruginosa PACS2]
 gi|116053722|ref|YP_788157.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888748|ref|YP_002437612.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa LESB58]
 gi|254237755|ref|ZP_04931078.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719]
 gi|254243116|ref|ZP_04936438.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192]
 gi|296386474|ref|ZP_06875973.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAb1]
 gi|313111476|ref|ZP_07797277.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016]
 gi|13959347|sp|Q9I7C4|DPO3B_PSEAE RecName: Full=DNA polymerase III subunit beta
 gi|9945820|gb|AAG03392.1|AE004440_2 DNA polymerase III, beta chain [Pseudomonas aeruginosa PAO1]
 gi|115588943|gb|ABJ14958.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169686|gb|EAZ55197.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719]
 gi|126196494|gb|EAZ60557.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192]
 gi|218768971|emb|CAW24729.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa LESB58]
 gi|310883779|gb|EFQ42373.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016]
          Length = 367

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 215/391 (54%), Gaps = 30/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G  +  
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +   I    E +   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F +A S L+ L++RT FAMA +++RYYLNG+   +N   L+  +VATDGH
Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           RLA+  +D     A++PS     +IVPRK + E+ R+L+ +D  V + L +  I      
Sbjct: 176 RLAMCSLD-----AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGE 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            + + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L LS+  
Sbjct: 231 FTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGL 290

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +  +NP+  +A E + V YN   ++I FN  YLL+++  I +     ++V F L  SN
Sbjct: 291 LKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSN 345

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  +   D D         ++ YV+MPMR+
Sbjct: 346 SSALVHEADND---------DSAYVVMPMRL 367


>gi|113968348|ref|YP_732141.1| DNA polymerase III subunit beta [Shewanella sp. MR-4]
 gi|117918469|ref|YP_867661.1| DNA polymerase III subunit beta [Shewanella sp. ANA-3]
 gi|113883032|gb|ABI37084.1| DNA polymerase III, beta subunit [Shewanella sp. MR-4]
 gi|117610801|gb|ABK46255.1| DNA polymerase III, beta subunit [Shewanella sp. ANA-3]
          Length = 366

 Score =  212 bits (539), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVIH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK+L++ T F+MA +++RYYLNG+      E   L A+ATDGH
Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L + D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  + +QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN  P++I FN  YLL++++N+ SD+V     +  +D ++S++  
Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKSDDV----RITLIDGNSSALLE 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++DS           YV+MPMR+
Sbjct: 351 NHLEEDS----------MYVVMPMRL 366


>gi|298484610|ref|ZP_07002715.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160867|gb|EFI01883.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 367

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 217/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDVKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       +
Sbjct: 173 DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|59710617|ref|YP_203393.1| DNA polymerase III subunit beta [Vibrio fischeri ES114]
 gi|59478718|gb|AAW84505.1| DNA polymerase III, beta subunit [Vibrio fischeri ES114]
          Length = 366

 Score =  211 bits (538), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + ++P+  ++LLQ  +G L + A+  E+E+   I   
Sbjct: 1   MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L D A I+   E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E      L+ + L+ L+E T F+MA +++RYYLNG+ F       +  +VATDGH
Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGNIFR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  + + +++ +   +I+PRK + E++R+L S + SV +    S +   + +   + 
Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K L  +C  LRQA  R +I+S+ + + V+++L+++++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   + ++N+S  +
Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D  N++     A YV+MP+R+
Sbjct: 350 ----EDCANDE-----AQYVVMPIRL 366


>gi|239993751|ref|ZP_04714275.1| DNA polymerase III, beta subunit [Alteromonas macleodii ATCC 27126]
 gi|332139412|ref|YP_004425150.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549434|gb|AEA96152.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 366

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 125/388 (32%), Positives = 219/388 (56%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R   L+ L      +ER++T+P+  +VL++ ++  L +  +  E+E+  ++   
Sbjct: 1   MKFTISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L+DI+R + +G  I F  +   G++  I  G   + L +   +++P
Sbjct: 61  GEFTEGEITVPAKKLFDIIRGISEGTDIHFSLD---GSKALIRAGRGRYTLSTLSANDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E    FEL+ S LK L++ T F+MA +++RYYLNG+     E  ++   VATDGH
Sbjct: 118 NLEDWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+  ++       +PS  +I+PRK V EI R++S  D S+KV +  + + +       
Sbjct: 176 RLALCRLNYET---ALPSRQVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIF 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG FP+Y+ V+P + DKE+  +   L++A  R +I+S+ + + V+L+LSS +L +
Sbjct: 233 TSKLVDGRFPDYRRVLPQNGDKEIIASKAVLKEAFSRAAILSNEKFRGVRLNLSSGELKI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    ++I FN  YL+++++ + S     D V   L  SN+S 
Sbjct: 293 TANNPEQEEAEEIVDVQYQGDDLEIGFNVAYLIDVLNALGS-----DGVKVSLSDSNASA 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I     D+         A YV+MPMR+
Sbjct: 348 LIEDDADDA---------ALYVIMPMRL 366


>gi|192362292|ref|YP_001980526.1| DNA polymerase III subunit beta [Cellvibrio japonicus Ueda107]
 gi|190688457|gb|ACE86135.1| DNA polymerase III, beta subunit [Cellvibrio japonicus Ueda107]
          Length = 367

 Score =  211 bits (537), Expect = 1e-52,   Method: Compositional matrix adjust.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V R  +L+ L     ++ER+ T+PV  +VL+Q     L +  +  E+EI G +   
Sbjct: 1   MKFAVSREALLKPLQLVAGVVERRQTLPVLSNVLIQLEGDQLSLTGTDLEVEIIGRLTLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI R L DG+ I FF E      + +  G S F L + P S+FP
Sbjct: 61  QAGQSGEITVPARKLVDICRSLPDGSTIEFFLEE---NRILVKSGRSRFTLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++      F  A + +K L+ERT FAMA +++RYYLNG+ + + ++ L++  VATDGH
Sbjct: 118 NVEDAPGNLRFSCAQAEVKRLIERTAFAMAQQDVRYYLNGMLWEVRQDHLRV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+    I      +   I+PRK V E+ R+L    + V+V LS + I +     + + 
Sbjct: 176 RMAMCTRAIAVNTDDVVQAILPRKGVLELSRLLDDSSAQVEVVLSANHIRVTSVDYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y+ V+P   +K +  +   L+QA  R +I+S+ + + V+L LS+  L +  
Sbjct: 236 KLVDGKFPEYERVLPRGGNKVVIGSRLELKQAFARTAILSNEKYRGVRLLLSNGVLTIVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  YL ++ + IS++ +     +  LD+++S++  
Sbjct: 296 NNPEQEEAEEQVTVDYTGESLEIGFNVSYLQDVANVISNENI----KITLLDANSSALLE 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++ DS           YV+MPMR+
Sbjct: 352 EPENSDS----------LYVVMPMRL 367


>gi|90408443|ref|ZP_01216603.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3]
 gi|90310427|gb|EAS38552.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3]
          Length = 368

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 221/387 (57%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGH-ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           M+ ++ R   L  L   A  +   +  +P+  ++L+Q  DG+L +  +  E+E+   I  
Sbjct: 1   MQFSISREAFLRPLQLVAGSVAGGRPALPIMANILIQIKDGILSLTGTDLEVELITQIHL 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            S    G ITV A  L +I R L D  +I F  +++    V +  G S + L S P S+F
Sbjct: 61  ESPSEEGEITVPARKLLNICRGLSDPCEIKFQVKDD---RVTVRSGRSRYLLSSLPASDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  + +  F +A    K L+E T FAMA++++RYYLNG++F  + + L+  +VATDG
Sbjct: 118 PNIESWKSLAEFNVAQKEFKKLIEFTQFAMASQDVRYYLNGMYFEASGDSLR--SVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +   I +  S+IVPRK V E++++L ++  +V + + ++ +   I +   +
Sbjct: 176 HRLASCAIKLSTPIEEQ-SLIVPRKGVVELVKLLDNEQENVTIQIGKNNLRAIIGNFIFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ VIP + DKEL  +  +L+QA  R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLVDGRFPDYRRVIPRNGDKELIASRESLKQAFTRAAILSNEKFRGVRLTLSKNLLQIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E +++ Y    ++I FN  Y+L++++ + S+++   ++ F   SS  S  
Sbjct: 295 ANNPEREEAEEYIDIDYQASDLEIGFNVSYVLDVLNTLKSEKI---KITF--SSSAHSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D D         +A YVLMPMR+
Sbjct: 350 IESIDADD--------DALYVLMPMRL 368


>gi|190571329|ref|YP_001975687.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018725|ref|ZP_03334533.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357601|emb|CAQ55042.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995676|gb|EEB56316.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 383

 Score =  211 bits (537), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 218/384 (56%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N I V   + ++A  G +++KA+  +I I  ++ A+
Sbjct: 19  MRFSVSRASLLNTLSRVSGVVERRNAIDVLACINIKAQYGSIKLKATDLDISIFASLTAN 78

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ IS G++NF L +   + FP 
Sbjct: 79  VSAEGEVKISAHTLHDIVKKLPTNLDVNFEMNNQ--GKLLISCGNANFSLPNVVSNNFPV 136

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E ++ Y F L S+ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 137 LEEGDHQYDFTLLSADLVDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 194

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK + E+L++L   +  + + LS+ +I        +  +
Sbjct: 195 LSCIKRPKPEDINGEFGVIIPRKTIMELLKVLDDCNE-INIKLSDRKIKFTCGEYILISK 253

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP S DK++ V  + L   +DRVS++ S +I+++K SL  + L +  +
Sbjct: 254 LIDGTFPDYKAVIPTSQDKQMIVESSKLASVIDRVSVVVSDKIKSIKFSLQENLLTLHSN 313

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A ES+ V Y+   M++ FN +YLL+++        ++++  F L   NS+  I 
Sbjct: 314 SQECSDATESIEVDYDGALMEVGFNSRYLLDVL------SCIENKCKFSLSDGNSATIIT 367

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D  S         A Y++MPMR
Sbjct: 368 DEDDPS---------ALYIVMPMR 382


>gi|146305044|ref|YP_001185509.1| DNA polymerase III subunit beta [Pseudomonas mendocina ymp]
 gi|145573245|gb|ABP82777.1| DNA polymerase III, beta subunit [Pseudomonas mendocina ymp]
          Length = 367

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            D    G ITV A  L DI + L   A I    +++   ++ +  G S F L + P ++F
Sbjct: 61  -DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +E     +F L  + L+ L+ERT FAMA +++RYYLNG+   +    L+  AVATDG
Sbjct: 117 PTVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGMLR--AVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  ++   Q      +IVPRK + E+ R+L+ +D+ V + L +  I  N    + +
Sbjct: 175 HRLAMCSMEAAIQQDGKHQVIVPRKGILELARLLTEQDAEVAIVLGQHHIRANTGEFTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L+L++  L + 
Sbjct: 235 SKLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLAAGLLKIQ 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + V Y    ++I FN  YLL+++  + +     ++V   L  SNSS  
Sbjct: 295 ANNPEQEEAEEEIVVDYAGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  D D         ++ YV+MPMR+
Sbjct: 350 LQEADND---------DSAYVVMPMRL 367


>gi|126668222|ref|ZP_01739183.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17]
 gi|126627371|gb|EAZ98007.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17]
          Length = 351

 Score =  211 bits (536), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 118/367 (32%), Positives = 201/367 (54%), Gaps = 20/367 (5%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYDIV 78
           ++E+K T+PV  +VLL A D  L +  +  E+E+   I P  +D  G ITV A  L DI 
Sbjct: 4   VVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARITPVHIDQPGRITVPARKLADIC 63

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
           R L + + I     ++ G  +++  G S+F L + P   FP+ ++E   +  EL    L+
Sbjct: 64  RALGEESPIEL---DQQGDRLHLRCGKSHFTLATLPAEHFPNVEDEAESFRLELPQKELR 120

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
            + + T FAMA +++RYYLNG+   +  + ++   VATDGHRLA+A  D+     +   +
Sbjct: 121 RMFDSTAFAMAQQDVRYYLNGLLLEVAADHVR--TVATDGHRLAMAHQDVETGCPEARQV 178

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           IVPRK V E+ R+L   D+ V + + ++ +   + S + + +LI+G+FP+Y  VIP   D
Sbjct: 179 IVPRKGVLELARLLDDVDTPVTLVIGDNHLRATVGSYTFTSKLIEGKFPDYNRVIPRGGD 238

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318
           K +  +   L+  + R  I+S   I+ V+L+L++++L +  +NPD  +A +++ V Y   
Sbjct: 239 KVVLADRITLKNTLQRAGILSHENIRGVRLNLAANELQVFANNPDQEQAEDALPVDYQGE 298

Query: 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY 378
            + I FN  YL+++++ +      DD+V   L + NSS  I  +               Y
Sbjct: 299 TLQIGFNVGYLIDVMNALD-----DDQVKVTLSNPNSSALIESQ---------TDARCLY 344

Query: 379 VLMPMRI 385
           V+MPMR+
Sbjct: 345 VVMPMRL 351


>gi|152987905|ref|YP_001345398.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PA7]
 gi|150963063|gb|ABR85088.1| DNA polymerase III, beta subunit [Pseudomonas aeruginosa PA7]
          Length = 367

 Score =  210 bits (535), Expect = 2e-52,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 30/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G  +  
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L     I    E +   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPSDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F +A S L+ L++RT FAMA +++RYYLNG+   +N   L+  +VATDGH
Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGALR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           RLA+  +D     A++PS     +IVPRK + E+ R+L+ +D  V + L +  I      
Sbjct: 176 RLAMCSLD-----AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGE 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            + + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L LS+  
Sbjct: 231 FTFTSKLVDGKFPDYERVLPRGGDKLVIGDRQQLREAFSRTAILSNEKYRGIRLQLSNGL 290

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +  +NP+  +A E + V YN   ++I FN  YLL+++  I +     ++V F L  SN
Sbjct: 291 LKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSN 345

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  +   D D         ++ YV+MPMR+
Sbjct: 346 SSALVHEADND---------DSAYVVMPMRL 367


>gi|120596835|ref|YP_961409.1| DNA polymerase III subunit beta [Shewanella sp. W3-18-1]
 gi|146291113|ref|YP_001181537.1| DNA polymerase III subunit beta [Shewanella putrefaciens CN-32]
 gi|120556928|gb|ABM22855.1| DNA polymerase III, beta subunit [Shewanella sp. W3-18-1]
 gi|145562803|gb|ABP73738.1| DNA polymerase III, beta subunit [Shewanella putrefaciens CN-32]
 gi|319424419|gb|ADV52493.1| DNA polymerase III, beta subunit [Shewanella putrefaciens 200]
          Length = 366

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 122/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQAVVH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK++++ T F+MA +++RYYLNG+ F    E   L A+ATDGH
Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFET--EGNMLRAIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L S D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRVIDAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVDYNNQSLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|86147176|ref|ZP_01065492.1| DNA polymerase III subunit beta [Vibrio sp. MED222]
 gi|85835060|gb|EAQ53202.1| DNA polymerase III subunit beta [Vibrio sp. MED222]
          Length = 366

 Score =  210 bits (535), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++        +  + L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGH
Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MP+R+
Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366


>gi|218708099|ref|YP_002415720.1| DNA polymerase III subunit beta [Vibrio splendidus LGP32]
 gi|218321118|emb|CAV17068.1| DNA polymerase III beta subunit [Vibrio splendidus LGP32]
          Length = 366

 Score =  210 bits (534), Expect = 3e-52,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++        +  + L+ L+E+T F+MA +++RYYLNG+ F I  E   L +VATDGH
Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSILRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEVLDVNFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MP+R+
Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366


>gi|294138803|ref|YP_003554781.1| DNA polymerase III subunit beta [Shewanella violacea DSS12]
 gi|293325272|dbj|BAJ00003.1| DNA polymerase III, beta subunit [Shewanella violacea DSS12]
          Length = 366

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 122/387 (31%), Positives = 218/387 (56%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV  G ITV A    DIV+ L D  ++    +EN L     +  G S F L + P  E+
Sbjct: 61  GDVVEGRITVPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  +    F +    LK+L++ T F+MA +++RYYLNG+    +   L+  A+ATDG
Sbjct: 117 PNVEAFQSDIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   I A + +   +IVPRK V E+ R+   +D  V +++ ++ I     S  ++
Sbjct: 175 HRLALSHRQIEATLPE-KQVIVPRKGVVELQRLFEGEDLDVTIAIGDNAIRATTSSAVLT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ L +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKVVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y+  P++I FN  YLL++++N+ S     D+V   L   NSS  
Sbjct: 294 ANNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    ++         ++ YV+MPMR+
Sbjct: 349 IENHIEE---------DSMYVVMPMRL 366


>gi|119503574|ref|ZP_01625657.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2080]
 gi|119460636|gb|EAW41728.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2080]
          Length = 365

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 212/386 (54%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +++ L     ++ER+ T+P+  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MKFSISREALIKPLNLVAGVVERRQTLPILSNVLLNLEGTQLSLTGTDLEVELIGRVEVE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G ITV A  L DI + L D +QI F  ++    +  +  G   F L + P +EFP
Sbjct: 61  AGGVDGDITVPARKLVDICKSLPDSSQIEFSVDS---GKAMVKAGRGRFTLSTLPATEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E     + E+A SV+K L++RT FAMA +++RYYLNG+   +    L++  VATDGH
Sbjct: 118 SVDESAGDQTLEVAQSVVKRLIDRTAFAMAQQDVRYYLNGMLLELKAGRLRM--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   +         +II+PRK V E+ R+L + D S+++ +  + I    +  + + 
Sbjct: 176 RLALCTANEAVSTGD-AAIIIPRKGVLELSRLLDT-DESIRLVIGSNHIRAANQQFTFTS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y+ V+P S DK +      LRQA  R +I+S+ + + V+L LS+D L +T 
Sbjct: 234 KLVDGKFPEYERVLPKSADKTVIGQRLELRQAFTRTAILSNEKYRGVRLKLSADTLDITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    +++ FN  YLL+++  +  D++       RL  S+S+   
Sbjct: 294 NNPEQEQAEEVVAVEYQGEELEVGFNVSYLLDVLSVLDGDQI-------RLSLSDSASSA 346

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++ D         ++ YV+MPMR+
Sbjct: 347 LLEEADEG-------DSLYVVMPMRL 365


>gi|49086146|gb|AAT51331.1| PA0002 [synthetic construct]
          Length = 368

 Score =  209 bits (533), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 129/391 (32%), Positives = 214/391 (54%), Gaps = 30/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           M  T++R  +L+ L     ++ER  T+PV  +VLL      L +  +  E+E+ G  +  
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERLQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +   I    E +   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F +A S L+ L++RT FAMA +++RYYLNG+   +N   L+  +VATDGH
Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           RLA+  +D     A++PS     +IVPRK + E+ R+L+ +D  V + L +  I      
Sbjct: 176 RLAMCSLD-----AQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGE 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            + + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L LS+  
Sbjct: 231 FTFTSKLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGL 290

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +  +NP+  +A E + V YN   ++I FN  YLL+++  I +     ++V F L  SN
Sbjct: 291 LKIQANNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSN 345

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  +   D D         ++ YV+MPMR+
Sbjct: 346 SSALVHEADND---------DSAYVVMPMRL 367


>gi|91791371|ref|YP_561022.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217]
 gi|91713373|gb|ABE53299.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217]
          Length = 366

 Score =  209 bits (532), Expect = 5e-52,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 222/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +  ++ +  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVKVSQDVISLTGTDLEVELVGQAAIH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G+ TV A  L DIV+ L + +++   +++       +  G S F L + P S++P
Sbjct: 61  GDIVPGNTTVPAKKLLDIVKSLPEQSELHVEQQDNRWL---LRSGRSRFTLATLPASDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F +   VLK++++ T F+MA +++RYYLNG+ F      LK  A+ATDGH
Sbjct: 118 NVEAFQAEIEFTIKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNTLK--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I   + +   +IVPRK V E+ R+L S D  + +++ ES I    ++   + 
Sbjct: 176 RLALSHRQIDVSLPE-KQVIVPRKGVVEMSRLLDSDDKDISIAIGESAIRAVTDTAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L    L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVVASRQQLKQALTRASILSNEKFRGVRIQLEPGLLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  YLL++++N++S++V     +  +D ++S++  
Sbjct: 295 NNPEQEEAEEIIDVDYDSANLEIGFNVSYLLDVLNNLASEDV----RITLIDGNSSALIE 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             K++DS           YV+MPMR+
Sbjct: 351 NHKEEDS----------MYVVMPMRL 366


>gi|119475237|ref|ZP_01615590.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2143]
 gi|119451440|gb|EAW32673.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2143]
          Length = 368

 Score =  209 bits (532), Expect = 7e-52,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 212/387 (54%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           MK  + R  +L+ L     ++ER+ T+P+  +VLL+     L I  +  E+E+ G   + 
Sbjct: 1   MKFVISREALLKPLNLVAGVVERRQTLPILSNVLLELEGNQLSITGTDLEVELVGRVVLD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            + +  G ITV A  L DI + L DG++I F ++++    V I  G S F L +   S+F
Sbjct: 61  QAPETGGEITVPARKLADICKSLPDGSEIEFTQDDQ---RVIIRSGRSRFTLSTLAASDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +E      F +    LK L++RT FAMA +++RYYLNG+ + +    L++  VATDG
Sbjct: 118 PNVEESPGSQDFTVKQGDLKRLIDRTSFAMAQQDVRYYLNGMLWEVQSGQLRV--VATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    +  +   +I+PRK V E+ R++  +   V++ +  + I    +  + +
Sbjct: 176 HRLALCTLATSIETTENLQVILPRKGVVELARLMMKESDDVRLVIGSNHIRATTDEYTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG+FP+Y  V+P ++ K +  +   LRQA  R +I+S+ + + V+L LS+D L + 
Sbjct: 236 SKLVDGKFPDYDRVLPKASTKTIFGSRDELRQAFSRTAILSNEKYRGVRLLLSNDTLQIV 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    ++I FN  YLL+++  +       + +   L  +NSS  
Sbjct: 296 ANNPEQEEAEEIVSVDYQGESLEIGFNVSYLLDVLGVLKG-----ETIKLSLADANSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          +  + ++ YV+MPMR+
Sbjct: 351 L---------EESEEGDSMYVVMPMRL 368


>gi|226326919|ref|ZP_03802437.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198]
 gi|225204756|gb|EEG87110.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  209 bits (531), Expect = 8e-52,   Method: Compositional matrix adjust.
 Identities = 129/388 (33%), Positives = 215/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LL+  +  L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMVARVNLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
                G+ TV A   +DI R L +GA+IS     EL G  + +  G S F L + P S+F
Sbjct: 61  QSHEIGATTVPARKFFDIWRGLPEGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+ +L  VATDG
Sbjct: 117 PNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237
           HRLAV  +DI  Q     S+IVPRK V E++R+L    +SS+++ +  + I  ++     
Sbjct: 175 HRLAVCSMDI-GQSLPGHSVIVPRKGVIELMRLLDGGGESSLQLQIGSNNIRAHVGDFIF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG FP+Y+ V+P +  K +   C  L+QA  R +I+S+ + + V+++L+S +L +
Sbjct: 234 TSKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTSGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M+I FN  YLL++++ +       +EV   L  + SSV
Sbjct: 294 TANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKC-----EEVKLLLTDAVSSV 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +      +         A YV+MPMR+
Sbjct: 349 QVENVASSA---------AAYVVMPMRL 367


>gi|308047724|ref|YP_003911290.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799]
 gi|307629914|gb|ADN74216.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799]
          Length = 366

 Score =  208 bits (530), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 123/386 (31%), Positives = 205/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + R  +L+ L      +ER++ +P+  +VLL+ +  LL++  +  E+E+ G +   
Sbjct: 1   MQFVINRETLLKPLQLVSGAVERRHNLPILANVLLEVSGNLLKVTGTDLEVELIGQVEVE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A    DI + L D A++   +++     + I  G S F L + P  EFP
Sbjct: 61  GDIQPGRTTVPARKFLDICKSLPDQAELRIEQQD---NRLLIKSGRSRFSLSTLPADEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L   VLK+L+E T F+MA +++RYYLNG+ F      L+   VATDGH
Sbjct: 118 EIGDWKGELQFTLPQGVLKSLIEATQFSMAHQDVRYYLNGMLFETEGNVLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV+   I A + +   +IVPRK V E+ R+   + + + + + ES I         + 
Sbjct: 176 RLAVSHRVIEASLPEK-QVIVPRKGVIELSRLFEDEQAEITLCIGESSIRAVTRDAIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +      LRQA  R SI+S+ + + V+L L +D+L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKDGDKVVVAERDALRQAFARASILSNEKFRGVRLLLENDRLTITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E +++ Y    ++I FN  Y+L++++ +       + V   L  +NSS   
Sbjct: 295 NNPEQEEAEEVLDLAYPYTSLEIGFNVSYVLDVLNALKQ-----ENVKMVLGEANSSALF 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D          + YV+MPMR+
Sbjct: 350 ENADNDE---------SLYVVMPMRL 366


>gi|28197947|ref|NP_778261.1| DNA polymerase III subunit beta [Xylella fastidiosa Temecula1]
 gi|182680574|ref|YP_001828734.1| DNA polymerase III subunit beta [Xylella fastidiosa M23]
 gi|28056007|gb|AAO27910.1| DNA polymerase III beta chain [Xylella fastidiosa Temecula1]
 gi|182630684|gb|ACB91460.1| DNA polymerase III, beta subunit [Xylella fastidiosa M23]
 gi|307579028|gb|ADN62997.1| DNA polymerase III subunit beta [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 366

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+       
Sbjct: 1   MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS
Sbjct: 61  DPESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHR
Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +
Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ + ++       D V  +L  SNSS  IR
Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + N   +  V+MP+R+
Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366


>gi|119947309|ref|YP_944989.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37]
 gi|119865913|gb|ABM05390.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37]
          Length = 367

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 119/363 (32%), Positives = 211/363 (58%), Gaps = 21/363 (5%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82
           +  +P+  ++L++  D  L +  +  E+E+   I   +    G ITV A  L DI R L 
Sbjct: 25  RPALPIMANILIEVKDNQLSLTGTDLEVELIAVIALENPSENGVITVPARKLLDICRGLS 84

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           +  +I F  + E   +V I  G S + L S P  +FP+ +  + +    +  +  K L+E
Sbjct: 85  EPCEIKFQVKEE---KVTIRSGRSRYLLSSLPAVDFPNIESWQSLVELTVPQAEFKKLIE 141

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
            T FAMA++++RYYLNG++F  +E+ L+  +VATDGHRLA   + +  Q+ +  S+IVPR
Sbjct: 142 FTQFAMASQDVRYYLNGMYFEASEQTLR--SVATDGHRLASCSIKL-NQVIEQQSVIVPR 198

Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262
           K V E++++L +  ++V + + ++ +   I+    + +L+DG FP+Y+ VIP + DKEL 
Sbjct: 199 KGVIELVKLLDNDQANVTIQIGQNNLRAVIDGFIFTTKLVDGRFPDYRRVIPKNGDKELI 258

Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
            N  +L+QA  R +I+S+ + + V+L LS + L +T +NP+  +A E ++V Y+   ++I
Sbjct: 259 SNRESLKQAFSRAAILSNEKFRGVRLILSENLLQITANNPEREEAEEYIDVDYHSANLEI 318

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            FN  Y+L++++ + S++V   ++ F   +S+ S  I   D D         ++ YVLMP
Sbjct: 319 GFNVSYVLDVLNTLKSEQV---KITF--SNSDHSALIESIDSD---------DSLYVLMP 364

Query: 383 MRI 385
           MR+
Sbjct: 365 MRL 367


>gi|77456230|ref|YP_345735.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf0-1]
 gi|77380233|gb|ABA71746.1| DNA polymerase III, beta chain [Pseudomonas fluorescens Pf0-1]
          Length = 367

 Score =  208 bits (529), Expect = 1e-51,   Method: Compositional matrix adjust.
 Identities = 128/391 (32%), Positives = 217/391 (55%), Gaps = 30/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL  +   L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     GSITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---TGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   ++  AVAT
Sbjct: 115 DFPTVEEGPGSLTTSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGVIR--AVAT 172

Query: 177 DGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           DGHRLA+   + DI  Q      +IVPRK + E+ R+L+  D +V + L +  I      
Sbjct: 173 DGHRLAMCSMQADIGQQ--DRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGE 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            + + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +
Sbjct: 231 FTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQ 290

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +  +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SN
Sbjct: 291 LKIQANNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSN 345

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  ++  D D         ++ YV+MPMR+
Sbjct: 346 SSALVQESDND---------DSAYVVMPMRL 367


>gi|163759228|ref|ZP_02166314.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica
           DFL-43]
 gi|162283632|gb|EDQ33917.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica
           DFL-43]
          Length = 385

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 130/397 (32%), Positives = 221/397 (55%), Gaps = 32/397 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGLLEIKASGPEIEITGAIPAS 60
           +T  R+ +L  +  A   +ER+NTIPV  ++LL+  A+DGL   + SG ++++   +   
Sbjct: 7   LTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGL---RVSGTDLDVMTTVATG 63

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +D        +T+ AHLL+DI+RKL D A++S   +     ++ ++ G S F LQ+ P +
Sbjct: 64  LDAEPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDGS--GQMTLTSGRSRFNLQTLPGA 121

Query: 117 EFPSTKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  +E+     +FE+ ++     +    FA++TEE RYYLNG++ H    D +L  VA
Sbjct: 122 DWPRLQEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMH--AIDNRLVTVA 179

Query: 176 TDGHRLA----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK--VSLSESRIH 229
           TDGHRLA     A V ++     MP II+PRK VG + + L++        +++SE+ I 
Sbjct: 180 TDGHRLARAVYSAAVGVMPAADAMPGIIIPRKTVGLVAKALAAAAKDATLAIAVSENMIS 239

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             + +  ++ +LIDG FP+Y+ VIP +N    R +   L QA +RVSI+SS R +AVK++
Sbjct: 240 FELGATRIASKLIDGTFPDYERVIPIANPNSWRFDVAALLQATERVSIISSERGRAVKMA 299

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
              + + +TV NPD G+  + ++V  +    ++I FN KYL +++ ++S    V      
Sbjct: 300 WGRESIDLTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHMSKSGSV------ 353

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            L++            D     D+++   +VLMPMR+
Sbjct: 354 HLNTGGDPARFEPVHAD-----DDEIAMTFVLMPMRV 385


>gi|42520873|ref|NP_966788.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410613|gb|AAS14722.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 365

 Score =  207 bits (528), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 217/384 (56%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 1   MRFSVSRTSLLNTLSRVSGVVERRNAIDVFACINIKAQHGSIKLMATDLDISMFASLAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+
Sbjct: 61  VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 119 LEEDNYKHDFTLLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L+IL   +  +KV LS+ +I        +  +
Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKFTCGEYILISK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FPNY+ VIP S DK + +    L   +DRVS++ S +++++K SL    L +  +
Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A ES+ V YNE P++I FN +YLL+++        + ++  F L   NS+  I 
Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D  S         A YV+MPMR
Sbjct: 350 DEDDSS---------ALYVVMPMR 364


>gi|71275533|ref|ZP_00651819.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon]
 gi|71900180|ref|ZP_00682320.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1]
 gi|170729253|ref|YP_001774686.1| DNA polymerase III subunit beta [Xylella fastidiosa M12]
 gi|71163833|gb|EAO13549.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon]
 gi|71730069|gb|EAO32160.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1]
 gi|167964046|gb|ACA11056.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 366

 Score =  207 bits (527), Expect = 2e-51,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+       
Sbjct: 1   MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS
Sbjct: 61  DAESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHR
Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +
Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ + ++       D V  +L  SNSS  IR
Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + N   +  V+MP+R+
Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366


>gi|254784275|ref|YP_003071703.1| DNA polymerase III subunit beta [Teredinibacter turnerae T7901]
 gi|237687276|gb|ACR14540.1| DNA polymerase III, beta subunit [Teredinibacter turnerae T7901]
          Length = 367

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 212/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TV R  +++ L     ++ER+ T+ V  +VL++     L +  +  E+EI G +   
Sbjct: 1   MKFTVSREALIKPLQLVAGVVERRQTMAVLANVLMEIEGDQLSLTGTDLEVEIIGRVQLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S    G ITV A    DI R L D + I F  +++  T   +  G S F L + P +EFP
Sbjct: 61  SAPGNGEITVPAKKFLDICRSLPDKSVIEFSLQDQKAT---VKSGKSRFTLSTLPANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++     +       +K L++RT FAMA +++RYYLNG+ + +   ++++  VATDGH
Sbjct: 118 AVEQGSNDINISCEQKEIKRLIDRTAFAMAQQDVRYYLNGMLWELRPGEIRV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV    +   ++++   I+PRK V E+ R+L+  +  V+VSL  S +  +    + + 
Sbjct: 176 RLAVCSRPVDVDVSEIKQAILPRKGVIELARLLNDSEDGVEVSLGSSHMRASTAEYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  N ++L+QA  R SI+S+ + + V+L L +  L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKVVLGNRSDLKQAFARTSILSNEKYRGVRLELVAGSLTIIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSVF 358
           +NP+  +A + + V YN   +++ FN  YL ++ +      V+D E +   L  SNSS  
Sbjct: 296 NNPEQEEAQDQVEVDYNGDALEVGFNVSYLQDVAN------VLDSENIKITLSDSNSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +     +   N D+     YV+MPMR+
Sbjct: 350 L-----EEPENSDSS----YVVMPMRL 367


>gi|254363201|ref|ZP_04979250.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica PHL213]
 gi|153095095|gb|EDN75646.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica PHL213]
          Length = 367

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 217/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+IT+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI + L D + IS  F+E++      I  G S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDK----AIIKAGRSKFSLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + ++ Q     S+IVPRKAV E+ R+++S D +V++ +  S I + +  +  
Sbjct: 175 GHRLAVCTM-VLNQELLTHSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS++ L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y+   M++ FN  Y+L++++ +         V F L  S+SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC-----QRVRFSLVDSSSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  S         A YV+MPMR+
Sbjct: 349 LIEDCDNSS---------AEYVIMPMRL 367


>gi|261493281|ref|ZP_05989808.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496475|ref|ZP_05992855.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261307678|gb|EEY09001.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311131|gb|EEY12307.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 369

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 217/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+IT+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 3   MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 62

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI + L D + IS  F+E++      I  G S F L + P S+
Sbjct: 63  QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEEDK----AIIKAGRSKFSLATLPASD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 119 YPNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + ++ Q     S+IVPRKAV E+ R+++S D +V++ +  S I + +  +  
Sbjct: 177 GHRLAVCTM-VLNQELLTHSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVF 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS++ L +
Sbjct: 236 TSKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y+   M++ FN  Y+L++++ +         V F L  S+SS 
Sbjct: 296 TANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKC-----QRVRFSLVDSSSSC 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  S         A YV+MPMR+
Sbjct: 351 LIEDCDNSS---------AEYVIMPMRL 369


>gi|225630799|ref|YP_002727590.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi]
 gi|225592780|gb|ACN95799.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi]
          Length = 385

 Score =  207 bits (526), Expect = 3e-51,   Method: Compositional matrix adjust.
 Identities = 129/384 (33%), Positives = 218/384 (56%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 21  MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 80

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+
Sbjct: 81  VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 138

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 139 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 196

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L+IL   +  +KV LS+ +I L      +  +
Sbjct: 197 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 255

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FPNY+ VIP S DK + +    L   +DRVS++ S +++++K SL    L +  +
Sbjct: 256 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 315

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A ES+ V YNE P++I FN +YLL+++        + ++  F L   NS+  I 
Sbjct: 316 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIIT 369

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D  S           YV+MPMR
Sbjct: 370 DEDDSS---------VLYVVMPMR 384


>gi|56417078|ref|YP_154152.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries]
 gi|222475444|ref|YP_002563861.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Florida]
 gi|255003430|ref|ZP_05278394.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004549|ref|ZP_05279350.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Virginia]
 gi|56388310|gb|AAV86897.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries]
 gi|222419582|gb|ACM49605.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Florida]
          Length = 379

 Score =  206 bits (525), Expect = 4e-51,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 218/389 (56%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R D+L+ L +   +IER+N+I V   V ++A DG++E+ ++  +I I   + AS
Sbjct: 12  LECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNAS 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G +  SA LLYDIVRKL     + F   +  L  E     G++ F+L      +FP
Sbjct: 72  VVHKGVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVEC----GNAKFFLHVVAPEKFP 127

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E    F++  S +  L+ +T F+M+ EE RY L G++ H+ E+   LC VATDGH
Sbjct: 128 AIEGGEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGH 185

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSS--VKVSLSESRIHLNIESLS 236
           RL++A+V+    +     +IVPRK V E+L+I+    D+S  V VS+S+ +I    +   
Sbjct: 186 RLSLAKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYF 245

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M  +++DG FP+Y ++IP      + ++  +L  AVDRVS++   +++A+KLS +S +L 
Sbjct: 246 MVSKVVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLT 305

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  + D G A E + V Y    + I  N +YL+E++  +        EVVF+    N++
Sbjct: 306 LSSASSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKG----ACEVVFQ--DGNTA 359

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V I+ K+            + +++MPMRI
Sbjct: 360 VLIQDKEPG---------GSMHIIMPMRI 379


>gi|269958514|ref|YP_003328301.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel]
 gi|269848343|gb|ACZ48987.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel]
          Length = 379

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 128/389 (32%), Positives = 218/389 (56%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R D+L+ L +   +IER+N+I V   V ++A DG++E+ ++  +I I   + AS
Sbjct: 12  LECSISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNAS 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G +  SA LLYDIVRKL     + F   +  L  E     G++ F+L      +FP
Sbjct: 72  VVHKGVVVASAQLLYDIVRKLSGDCAVGFKMSDGRLLVEC----GNAKFFLHVVAPEKFP 127

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E    F++  S +  L+ +T F+M+ EE RY L G++ H+ E+   LC VATDGH
Sbjct: 128 AIEGGEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGH 185

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSS--VKVSLSESRIHLNIESLS 236
           RL++A+V+    +     +IVPRK V E+L+I+    D+S  V VS+S+ +I    +   
Sbjct: 186 RLSLAKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYF 245

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M  +++DG FP+Y ++IP      + ++  +L  AVDRVS++   +++A+KLS +S +L 
Sbjct: 246 MVSKVVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLT 305

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  + D G A E + V Y    + I  N +YL+E++  +        EVVF+    N++
Sbjct: 306 LSSASSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKG----ACEVVFQ--DGNTA 359

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V I+ K+            + +++MPMRI
Sbjct: 360 VLIQDKEPG---------GSMHIIMPMRI 379


>gi|330447268|ref|ZP_08310918.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491459|dbj|GAA05415.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 366

 Score =  206 bits (524), Expect = 5e-51,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALD 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G++TV +    DI R L   A IS   E   G  V I  G S + L + P ++FP
Sbjct: 61  GEFESGAVTVPSRKFLDICRGLPSSASISVSYE---GDRVLIRSGRSRYTLTTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    ++ L++ T F+MA +++RYYLNG+ F  + + L+  +VATDGH
Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  ++   ++     IIVPRK V E++R+  + ++ V + +  S I   + +   + 
Sbjct: 176 RMAVCAINTGHELPT-KQIIVPRKGVLELVRLFDNPEAEVNIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P ++ K +   C  +R A  R +I+S+ + + V+++LS+ ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEIRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+   I
Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +DS N++     A YV+MP+R+
Sbjct: 350 ----EDSNNDE-----AMYVVMPIRL 366


>gi|332991510|gb|AEF01565.1| DNA polymerase III subunit beta [Alteromonas sp. SN2]
          Length = 366

 Score =  206 bits (524), Expect = 6e-51,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   L+ L      +ER++T+P+  +VL++ ++  L +  +  E+E+  ++   
Sbjct: 1   MKFSISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L+DI+R + +G  I F  +   G +  I  G   + L +   +++P
Sbjct: 61  GEFTEGEITVPAKKLFDIIRGISEGTDIHFSID---GNKALIKAGRGRYTLSTLSANDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E    FE+  S +K L++ T F+MA +++RYYLNG+     E  ++   VATDGH
Sbjct: 118 NLEDWEGEVEFEITCSDMKRLIDSTSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +     +     +I+PRK V EI R+++  D S+KV +  + + +       + 
Sbjct: 176 RLALCRLSYETTLPAR-QVIIPRKGVLEISRLITEDDKSLKVQIGANHLRIFSNDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DKE+  +   L+ A  R +I+S+ + + V+L+LSS +L +T 
Sbjct: 235 KLVDGRFPDYRRVLPQDGDKEIIASKAVLKDAFSRAAILSNEKFRGVRLNLSSGELKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  YL+++++++ S     D+V   L  SN+S  I
Sbjct: 295 NNPEQEEAEEIVDVNYQGDDLEIGFNVAYLIDVLNSLGS-----DDVKISLSDSNASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D+         A YV+MPMR+
Sbjct: 350 EDAADDA---------ALYVIMPMRL 366


>gi|312958104|ref|ZP_07772627.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6]
 gi|311287535|gb|EFQ66093.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6]
          Length = 367

 Score =  206 bits (523), Expect = 7e-51,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 214/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++E  ++  AVAT
Sbjct: 115 DFPTVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       +
Sbjct: 173 DGHRLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|90581123|ref|ZP_01236922.1| DNA polymerase III subunit beta [Vibrio angustum S14]
 gi|90437644|gb|EAS62836.1| DNA polymerase III subunit beta [Vibrio angustum S14]
          Length = 366

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L   A IS   E   G  V I    S + L + P ++FP
Sbjct: 61  GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    ++ L++ T F+MA +++RYYLNG+ F  + + L+  +VATDGH
Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D   ++     IIVPRK V E++R+  + +S V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDTGHELPT-KQIIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P ++ K +   C  +R A  R +I+S+ + + V+++LS+ ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+   I
Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+ N++     A YV+MP+R+
Sbjct: 350 ----EDATNDE-----AMYVVMPIRL 366


>gi|104779318|ref|YP_605816.1| DNA polymerase III subunit beta [Pseudomonas entomophila L48]
 gi|95108305|emb|CAK12999.1| DNA polymerase III, beta chain [Pseudomonas entomophila L48]
          Length = 367

 Score =  205 bits (522), Expect = 8e-51,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 213/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L   A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPSDALIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     + +L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSPGTLR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +      A    +IVPRK + E+ R+L+  + +V + L +  I       +
Sbjct: 173 DGHRLALCAMQAPIDQADRHQVIVPRKGILELARLLTDPEGTVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVDYNGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++    D         ++ YV+MPMR+
Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367


>gi|89074701|ref|ZP_01161159.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34]
 gi|89049465|gb|EAR55026.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34]
          Length = 366

 Score =  205 bits (521), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVVLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L   A IS   E   G  V I    S + L + P ++FP
Sbjct: 61  GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +   +F L    ++ L++ T F+MA +++RYYLNG+ F  + + L+  +VATDGH
Sbjct: 118 NIEDWQSEVAFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D   ++     +IVPRK V E++R+  + +S V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDTGHELPT-KQVIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P ++ K +   C  +R A  R +I+S+ + + V+++LS+ ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+   I
Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D+ N++     A YV+MP+R+
Sbjct: 350 ----EDATNDE-----AMYVVMPIRL 366


>gi|146280399|ref|YP_001170552.1| DNA polymerase III subunit beta [Pseudomonas stutzeri A1501]
 gi|145568604|gb|ABP77710.1| DNA polymerase III, beta subunit [Pseudomonas stutzeri A1501]
 gi|327478614|gb|AEA81924.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 4166]
          Length = 367

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 214/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  +++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G + A 
Sbjct: 1   MHFSIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRV-AL 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            D    G ITV A  L DI + L   A IS   +++   +V I  G S F L + P ++F
Sbjct: 60  EDAAEPGEITVPARKLMDICKSLPSDALISIRLDDQ---KVVIKSGRSRFTLSTLPANDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +E     SF +A   L+ L+ER+ FAMA +++RYYLNG+   ++   L+  AVATDG
Sbjct: 117 PTVEEGPGSLSFTVAQGKLRKLIERSAFAMAQQDVRYYLNGMLIEVSSGMLR--AVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    +      +IVPRK + E+ R+L+ +D+ V + L +  I       + +
Sbjct: 175 HRLAMCSMQAGIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L S  L + 
Sbjct: 235 SKLVDGKFPDYERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKIQ 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  +NSS  
Sbjct: 295 ANNPEQEEAEEEVAVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDANSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  D D         ++ YV+MPMR+
Sbjct: 350 VQEFDND---------DSAYVVMPMRL 367


>gi|149925375|ref|ZP_01913639.1| DNA polymerase III subunit beta [Limnobacter sp. MED105]
 gi|149825492|gb|EDM84700.1| DNA polymerase III subunit beta [Limnobacter sp. MED105]
          Length = 368

 Score =  204 bits (520), Expect = 1e-50,   Method: Compositional matrix adjust.
 Identities = 124/370 (33%), Positives = 206/370 (55%), Gaps = 26/370 (7%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---SITVSAHLLYD 76
           I+ER+NT+PV  ++LL+   GLL + +S  E++I  +  A V   G   + TV+A    D
Sbjct: 21  IVERRNTLPVLANILLKKQGGLLTLLSSDIEMQIETS--AEVGAGGEDTATTVAARKFLD 78

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASS 135
           I+R L + + +    +   G ++++    S F LQ+ P  +FP  +E +E+V    L   
Sbjct: 79  ILRSLPEDSDVMVKLD---GKKMSVQAKKSRFALQTLPAEDFPLVQEPKEWVTQISLPQK 135

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
           +LKNL+   HF+MA +++RYYLNG+   I  E   + AVATDGHRLA A+       AK 
Sbjct: 136 MLKNLLGMVHFSMAQQDLRYYLNGVLLVI--ESACVRAVATDGHRLAYADAPGQGGTAKH 193

Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
             +I+PRK V E+ R+L+  D +V + L+ ++       +++  +L++G+FP+YQ VIP 
Sbjct: 194 -EVIIPRKTVLELSRLLNDTDDTVTIDLASNQAKFTFSDITLITKLVEGKFPDYQRVIPK 252

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
           ++   + +    L  ++ R SI++S + + ++  L ++ L +  +N D  +A + M V Y
Sbjct: 253 THQHHVVIARDALLHSLQRASILTSDKFRGIRWVLGANGLTIVANNSDQEEARDEMEVEY 312

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
               +D+ FN  YLL++++N+ S     + V F L   NSS  +    KD     D K  
Sbjct: 313 QGPEIDVGFNVNYLLDVLNNLKS-----ETVQFTLQDGNSSALVTTPGKD-----DFK-- 360

Query: 376 AFYVLMPMRI 385
             YV+MPMRI
Sbjct: 361 --YVVMPMRI 368


>gi|15836607|ref|NP_297295.1| DNA polymerase III subunit beta [Xylella fastidiosa 9a5c]
 gi|9104762|gb|AAF82815.1|AE003855_2 DNA polymerase III, beta chain [Xylella fastidiosa 9a5c]
          Length = 366

 Score =  204 bits (520), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 209/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+       
Sbjct: 1   MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS
Sbjct: 61  DAESGEITIPARKIYEIVRALPDSSQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +   +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHR
Sbjct: 118 IDKIEVTERIIIPEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +
Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ + ++       D V  +L  SNSS  IR
Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + N   +  V+MP+R+
Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366


>gi|255320701|ref|ZP_05361878.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SK82]
 gi|262380668|ref|ZP_06073821.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SH164]
 gi|255302317|gb|EET81557.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SK82]
 gi|262297616|gb|EEY85532.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SH164]
          Length = 382

 Score =  204 bits (519), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 123/402 (30%), Positives = 215/402 (53%), Gaps = 37/402 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +QA+   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLS 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L DI + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLQPGETTVPARKLMDICKSLPSAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P    +       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLNHDNSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDETQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TDGHRLA+ E  + +  A  P   IVPRKAV E+ R+LS +D  + + +    +++ I++
Sbjct: 176 TDGHRLALCET-LASSTASQPVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQT 234

Query: 235 LS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            S            + +LIDG+FP+Y+ VIP   DK +++     +Q++ RV+I+S+ ++
Sbjct: 235 PSRDKEQGEITVRFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKL 294

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           + V L+ ++D L +  +NP+  +AIE + + YN  P+++ FN +YLLE+++ +       
Sbjct: 295 RGVFLNFNADSLQLRANNPEQDEAIEDLAIQYNNSPLEMSFNAQYLLEVLNVLDG----- 349

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D+VV  +  +N SV ++   +  +          YV+MPMR+
Sbjct: 350 DDVVMTMTEANQSVLVQDPAQQDQT---------YVVMPMRV 382


>gi|262371172|ref|ZP_06064493.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
 gi|262313902|gb|EEY94948.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
          Length = 382

 Score =  204 bits (518), Expect = 2e-50,   Method: Compositional matrix adjust.
 Identities = 121/401 (30%), Positives = 207/401 (51%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q     L I  S  E+E+  + P +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKVQVTQASLTITGSDLEVELVASTPLT 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L DI + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLQAGETTVPARKLMDICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E        +    LK L E+T FAMA +++R+YL G    I+   L+  AV 
Sbjct: 118 DYPLLTTENTQGTQVAVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDNNQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E    +   ++   IVPRKAVGE+ R+LS +D  + + +    +++ I   
Sbjct: 176 TDGHRLALCETVASSNATQLIQAIVPRKAVGELQRLLSIEDEQLALLIGRELLNVTISIA 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RVSI+S+ +++
Sbjct: 236 SRDKEQGDTMVRFTTKLIDGKFPDYRRVIPRGGDKNVLIAHDVFKQSLQRVSILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ ++D L +  +NP+  +A+E + + YN  PM++ FN +Y+LE++  +       D
Sbjct: 296 GVFLNFAADTLQLRANNPEQDEAVEDLAIQYNNAPMEMSFNAQYILEVLGALDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVSMTMTEANQSVLVQDPAHQDQT---------YVVMPMRV 382


>gi|229587580|ref|YP_002869699.1| DNA polymerase III subunit beta [Pseudomonas fluorescens SBW25]
 gi|229359446|emb|CAY46287.1| DNA polymerase III, beta chain [Pseudomonas fluorescens SBW25]
          Length = 367

 Score =  204 bits (518), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 214/389 (55%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I   K +E   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDI-KVDE--AKLVVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++E  ++  AVAT
Sbjct: 115 DFPTVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +           +IVPRK + E+ R+L+  + +V + L +  I       +
Sbjct: 173 DGHRLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEVGVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|330806659|ref|YP_004351121.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374767|gb|AEA66117.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 367

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 213/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     GSITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAD---PGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   ++  AVAT
Sbjct: 115 DFPTVEEGPGSLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       +
Sbjct: 173 DGHRLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|118496617|ref|YP_897667.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194323923|ref|ZP_03057698.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|254372004|ref|ZP_04987497.1| hypothetical protein FTCG_01143 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254375146|ref|ZP_04990626.1| DNA polymerase III [Francisella novicida GA99-3548]
 gi|118422523|gb|ABK88913.1| DNA polymerase III, beta subunit [Francisella novicida U112]
 gi|151569735|gb|EDN35389.1| hypothetical protein FTCG_01143 [Francisella novicida GA99-3549]
 gi|151572864|gb|EDN38518.1| DNA polymerase III [Francisella novicida GA99-3548]
 gi|194321820|gb|EDX19303.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|328676080|gb|AEB26950.1| DNA polymerase III beta subunit [Francisella cf. novicida Fx1]
          Length = 367

 Score =  203 bits (517), Expect = 3e-50,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 223/389 (57%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L + + I F + NE   +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDF-RVNE--NKVTIVSNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +NPD  KA + + V YN+ PM+ICFNYKYLL+II N+ S+E +       LD+ N S
Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDII-NVLSEETMS----IYLDNPNMS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          KD K N+ +++MPM+I
Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367


>gi|262281563|ref|ZP_06059342.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
 gi|262257022|gb|EEY75761.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
          Length = 382

 Score =  203 bits (517), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/402 (30%), Positives = 213/402 (52%), Gaps = 37/402 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLS 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E+   +  A++   IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEITASSTSAQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + ++    +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGNITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD- 343
            V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLLE++       V+D 
Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLEVLG------VLDG 349

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D+V   +  +N SV ++      +          YV+MPMR+
Sbjct: 350 DDVNMSMSEANQSVLVQDPAHSDQT---------YVVMPMRV 382


>gi|157959832|ref|YP_001499866.1| DNA polymerase III subunit beta [Shewanella pealeana ATCC 700345]
 gi|157844832|gb|ABV85331.1| DNA polymerase III, beta subunit [Shewanella pealeana ATCC 700345]
          Length = 366

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 215/389 (55%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ ++  L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSNHSLKLTGTDLEVELVGEVQLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            ++  G  TV A    DIV+ L D  ++    +EN L     +  G S F L + P  E+
Sbjct: 61  GEILEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRLL----LRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E    F L    +K+L++ T F+MA +++RYYLNG+      E   L A+ATDG
Sbjct: 117 PNVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   I A + +   +IVPRK V E++R   + D  V +++ ++ I     +   +
Sbjct: 175 HRLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ + +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKVVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  
Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           I           DN +  ++ YV+MPMR+
Sbjct: 349 I-----------DNHIEQDSMYVVMPMRL 366


>gi|187930915|ref|YP_001890899.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711824|gb|ACD30121.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 367

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 223/389 (57%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L + + I F + NE   +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITEAIIDSKVLDSASKSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +NPD  KA + + V YN+ PM+ICFNYKYLL+II N+ S+E +       LD+ N S
Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDII-NVLSEETMS----IYLDNPNMS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          KD K N+ +++MPM+I
Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367


>gi|331007622|ref|ZP_08330764.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989]
 gi|330418562|gb|EGG93086.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989]
          Length = 369

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 216/389 (55%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L  L     ++ER+ T+PV  +VL+   +  L +  +  E+EI   +P  
Sbjct: 1   MKFSVSREALLVPLQLVAGVVERRQTLPVLANVLVVLENETLSLTGTDLEVEIVARLPLE 60

Query: 61  --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V   G IT+ A  L DI R L DGA + F  + +   +V +  G S F L + P ++F
Sbjct: 61  NPVQDTGEITIPAKKLVDICRSLPDGATVEFILQED--QKVIVKSGRSRFTLATLPSNDF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PST++ E    F  + S++K L++RT FAMA +++RYYLNG+ + +  E  +L  VATDG
Sbjct: 119 PSTEKSEGDLQFSCSQSIIKRLIDRTAFAMAQQDVRYYLNGMLWEV--EGNRLRCVATDG 176

Query: 179 HRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRLA  V E+DI   + +    I+PRK V E+ R+L+ +++ + ++L    I ++  + +
Sbjct: 177 HRLAMCVRELDI--DVPEKSQAILPRKGVIELSRLLNDQEAQIDLTLGTHHIRVDTPNYT 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P      +  N T L+QA  R +I+S+ + + V+L+ +   L 
Sbjct: 235 FTSKLVDGKFPDYERVLPKGGTNVVLGNRTELKQAFARTAILSNEKYRGVRLNFTEGLLN 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E + + Y    ++I FN  YL +I   +++     + V   L  +NSS
Sbjct: 295 IVANNPEQEEAEEQVVIDYKGDEIEIGFNVSYLQDITSVLNT-----ENVKITLSDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   ++          ++ YV+MPMR+
Sbjct: 350 ALLEEPEEG---------DSVYVVMPMRL 369


>gi|56707189|ref|YP_169085.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255451|ref|YP_512812.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669659|ref|YP_666216.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115313983|ref|YP_762706.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301171|ref|YP_001121139.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156501372|ref|YP_001427436.1| DNA polymerase III, subunit beta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|208780098|ref|ZP_03247441.1| DNA polymerase III, beta subunit [Francisella novicida FTG]
 gi|254366861|ref|ZP_04982899.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica 257]
 gi|254368433|ref|ZP_04984450.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371403|ref|ZP_04987404.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56603681|emb|CAG44635.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143282|emb|CAJ78443.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|110319992|emb|CAL08018.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115128882|gb|ABI82069.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134048948|gb|ABO46019.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134252689|gb|EBA51783.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica 257]
 gi|151569642|gb|EDN35296.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156251975|gb|ABU60481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157121327|gb|EDO65528.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|208744102|gb|EDZ90403.1| DNA polymerase III, beta subunit [Francisella novicida FTG]
 gi|282158288|gb|ADA77679.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 367

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 126/389 (32%), Positives = 223/389 (57%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L + + I F + NE   +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +NPD  KA + + V YN+ PM+ICFNYKYLL+II N+ S+E +       LD+ N S
Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDII-NVLSEETMS----IYLDNPNMS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          KD K N+ +++MPM+I
Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367


>gi|301154704|emb|CBW14167.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae T3T1]
          Length = 366

 Score =  203 bits (516), Expect = 4e-50,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D  +I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAI---VESGRSKFNLTTLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +++  Q  +  S+I+PRK V E+ R+L S D   ++ +  + + +++  +  + 
Sbjct: 176 RLAVCTIEL-DQDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +  N   L+QA  R SI+S+ R+++V+L+LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +        +V  RL  ++SS  I
Sbjct: 295 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKC-----QQVRIRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N++D   +A YV+MPMR+
Sbjct: 350 -------ENSED--ASAEYVIMPMRL 366


>gi|325577774|ref|ZP_08148049.1| DNA-directed DNA polymerase III beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160519|gb|EGC72645.1| DNA-directed DNA polymerase III beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 367

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 124/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 2   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 61

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D  +I+   E +      +  G S F L + P  E+P
Sbjct: 62  SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEEDRAI---VESGRSKFNLTTLPAEEYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 119 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +++  Q  +  S+I+PRK V E+ R+L S D   ++ +  + + +++  +  + 
Sbjct: 177 RLAVCTIEL-DQDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +  N   L+QA  R SI+S+ R+++V+L+LS ++L +T 
Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +        +V  RL  ++SS  I
Sbjct: 296 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKC-----QQVRIRLTDASSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N++D   +A YV+MPMR+
Sbjct: 351 -------ENSED--ASAEYVIMPMRL 367


>gi|197286951|ref|YP_002152823.1| DNA polymerase III subunit beta [Proteus mirabilis HI4320]
 gi|227354808|ref|ZP_03839225.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906]
 gi|118801|sp|P22838|DPO3B_PROMI RecName: Full=DNA polymerase III subunit beta
 gi|150879|gb|AAA83959.1| DNA polymerase III beta subunit [Proteus mirabilis]
 gi|194684438|emb|CAR46154.1| DNA polymerase III beta subunit [Proteus mirabilis HI4320]
 gi|227165126|gb|EEI49957.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906]
          Length = 367

 Score =  203 bits (516), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 116/344 (33%), Positives = 199/344 (57%), Gaps = 10/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LL+  +  L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
                G+ TV A   +DI R L +GA+IS     EL G  + +  G S F L + P S+F
Sbjct: 61  QSHEIGATTVPARKFFDIWRGLPEGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+ +L  VATDG
Sbjct: 117 PNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237
           HRLAV  +DI  Q     S+IVPRK V E++R+L  S +S +++ +  + +  ++     
Sbjct: 175 HRLAVCAMDI-GQSLPGHSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +L+DG FP+Y+ V+P +  K +   C  L+QA  R +I+S+ + + V+++L++ +L +
Sbjct: 234 TSKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           T +NP+  +A E ++V Y    M+I FN  YLL++++ +  +EV
Sbjct: 294 TANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKCEEV 337


>gi|70733515|ref|YP_257154.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68347814|gb|AAY95420.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 367

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 123/389 (31%), Positives = 213/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     + +L  S L+ L+ERT FAMA +++RYYLNG+   ++   ++  AVAT
Sbjct: 115 DFPTVEEGPGSLTCQLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIR--AVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       +
Sbjct: 173 DGHRLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 348 ALVQESDND---------DSAYVVMPMRL 367


>gi|119773156|ref|YP_925896.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765656|gb|ABL98226.1| DNA polymerase III, beta subunit [Shewanella amazonensis SB2B]
          Length = 366

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEATVH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            DV  G  TV A  L DIV+ L +  +I   ++     +  +  G S F L + P  E+P
Sbjct: 61  GDVQEGRTTVPAKKLLDIVKSLPEQTEIKVEQQE---NKWLLRCGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +       F L    LK+L++ T F+MA +++RYYLNG+   I  E   L AVATDGH
Sbjct: 118 NVEAFRPDIEFTLKQGTLKSLIDSTQFSMANQDVRYYLNGLL--IETEGNVLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + +   +IVPRK V E+ R+L ++D  + +++ ES I     +   + 
Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVVELSRLLDAEDQDITLAIGESAIRATTATAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L    L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRILLEDGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL++++++ SDEV     V  +DS++S++  
Sbjct: 295 NNPEQEEAEEIIDVDYNSTTLEIGFNVSYLLDVLNSLRSDEV----RVTLIDSNSSALIE 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++DS           YV+MPMR+
Sbjct: 351 NHVEEDS----------MYVVMPMRL 366


>gi|157373148|ref|YP_001471748.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315522|gb|ABV34620.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 366

 Score =  202 bits (515), Expect = 5e-50,   Method: Compositional matrix adjust.
 Identities = 119/387 (30%), Positives = 214/387 (55%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV  G  T+ A    DIV+ L D  ++    +EN L     +  G S F L + P  E+
Sbjct: 61  GDVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  +    F +    LK+L++ T F+MA +++RYYLNG+      E   L A+ATDG
Sbjct: 117 PNVEAFQADIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   +V +      +IVPRK V E+ R+   +D  + +++ ++ I     S   +
Sbjct: 175 HRLALSH-RMVEESLPEKQVIVPRKGVVELQRLFEGEDLDITIAIGDNAIRATTGSAVFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L ++ + +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLENNLIKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  
Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    ++         N+ YV+MPMR+
Sbjct: 349 IENHIEE---------NSMYVVMPMRL 366


>gi|167621943|ref|YP_001672237.1| DNA polymerase III subunit beta [Shewanella halifaxensis HAW-EB4]
 gi|167351965|gb|ABZ74578.1| DNA polymerase III, beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 366

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 214/389 (55%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEVQLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V  G  TV A    DIV+ L D  ++    +EN L     +  G S F L + P  E+
Sbjct: 61  GEVVEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E    F L    +K+L++ T F+MA +++RYYLNG+      E   L A+ATDG
Sbjct: 117 PNVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   I A + +   +IVPRK V E++R   + D  V +++ ++ I     +   +
Sbjct: 175 HRLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ + +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKIVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  
Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           I           DN +  ++ YV+MPMR+
Sbjct: 349 I-----------DNHIEQDSMYVVMPMRL 366


>gi|127510937|ref|YP_001092134.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4]
 gi|126636232|gb|ABO21875.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4]
          Length = 366

 Score =  202 bits (514), Expect = 7e-50,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQ 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +V  G  TV A    DIV+ L D  ++   +++     + +  G S F L + P  E+P
Sbjct: 61  GEVQEGRTTVPAKKFLDIVKSLPDQVELKIEQQD---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +    F L    LK+L++ T F+MA +++RYYLNG+      E   L A+ATDGH
Sbjct: 118 NVDAFQADIEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +V        +IVPRK V E+ R+   +D  V +S+ E+ I    +S   + 
Sbjct: 176 RLALSH-RMVQDSLPEKQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L  + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E +++ Y+  P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDIEYDNAPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHVEE---------DSMYVVMPMRL 366


>gi|78484348|ref|YP_390273.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2]
 gi|78362634|gb|ABB40599.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2]
          Length = 368

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI++ R ++L++L     ++E++ T+P+  ++L Q N   L + AS  EIE   +    
Sbjct: 1   MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D   S+T+ A  L  IVR L DG  I   + +E+     +S G S F L + P  +FP
Sbjct: 61  SSDGDFSVTLPAVKLISIVRSLPDGLTI-LLEFDEM--RCQLSAGRSRFKLSTLPADDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +   SF +A   LK ++  T FAMA++++R+YLNG+ F I+ + L++  VATDGH
Sbjct: 118 TIDLTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+     +  +       I+PRK V E+ +++   DS +  SL+++ + +  E    + 
Sbjct: 176 RLSTCSTLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTC 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP++  V+P  ND+ ++ +   LR  + R +I+S+ + + ++L+LS + L +  
Sbjct: 236 KLVDGRFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  ++ E M + YN   M+I FN  YLL++++++      ++ V   +  +NSS  +
Sbjct: 296 QNSDQDESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMH-----EEAVTLYMKDANSSCMV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D++N      +  +V+MPMR+
Sbjct: 351 -----DTQN---ETCHCQHVIMPMRL 368


>gi|149191877|ref|ZP_01870111.1| DNA polymerase III subunit beta [Vibrio shilonii AK1]
 gi|148834269|gb|EDL51272.1| DNA polymerase III subunit beta [Vibrio shilonii AK1]
          Length = 320

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 106/322 (32%), Positives = 186/322 (57%), Gaps = 20/322 (6%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            GS+TV +    DI R L D + I+   E   G  V +  G S F L + P S+FP+ ++
Sbjct: 19  AGSVTVPSRKFLDICRGLPDDSTITIVLE---GDRVQVRSGRSRFSLSTLPASDFPNIED 75

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +   +  +  + LK+L+E+T F+MA +++RYYLNG+ F +++  L+  +VATDGHR+AV
Sbjct: 76  WQQEVAVTVTQAELKSLIEKTQFSMANQDVRYYLNGMLFELDQNTLR--SVATDGHRMAV 133

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
           A V +         IIVPRK V E+ ++L + +  V + +  S I   + +   + +L+D
Sbjct: 134 ALVSLEGSFDN-KQIIVPRKGVQELSKLLDAPEQPVTLQIGSSNIRAEVNNFVFTSKLVD 192

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  LRQA  R +I+S+ + + V+++L  +++ +T +NP+
Sbjct: 193 GRFPDYRRVLPQNTDKTLEANCDELRQAFSRAAILSNEKFRGVRVNLDQNEMRITANNPE 252

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A E ++V +    ++I FN  Y+L++++ +       D+V   + ++N+S  I   +
Sbjct: 253 QEEAEEMLDVEFQGDALEIGFNVSYVLDVLNTLRC-----DQVRISMSNANASALIENSE 307

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            DS         A YV+MP+R+
Sbjct: 308 DDS---------AMYVVMPIRL 320


>gi|238898808|ref|YP_002924490.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466568|gb|ACQ68342.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 368

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 126/388 (32%), Positives = 217/388 (55%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ N+ +L + A+  ++E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVISPLSARPTMPILGNLLLQVNENVLFLTATDLQMEMVVRVVLS 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   GS TV A   +DI R L +G+ I+   +   G  + +  G S F L + P S 
Sbjct: 61  HSDLHESGSTTVPARKFFDIWRGLLEGSTITVTLD---GDRLLVYSGRSRFSLSTLPSSG 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   + +   +F L    LK L++ T F+MA +++RYYLNG+ F    ++L+   VATD
Sbjct: 118 FPGLDDWKTQVAFSLPQETLKKLIDATQFSMAHQDVRYYLNGMLFETENKELR--TVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  +     +    S+IVPRK V E+ R+L +    VK+ + E  I  ++++L+ 
Sbjct: 176 GHRLAVCSMSTDETLPSY-SVIVPRKGVIELGRLLEASVHPVKLHIGEHNIRAHLDNLTF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LID  FP+Y+ V+P + +K L   C  L+QA  RV+I+S+ + + V+L LS +++ +
Sbjct: 235 TCKLIDARFPDYRRVLPKNPNKILEAKCDLLKQAFSRVAILSNEKFRGVRLYLSHNQMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E +++ Y    ++I  N  Y+L+I++ +       D+V F L ++ SS+
Sbjct: 295 TANNPEQEEAEEILDIEYEGEELEIGLNVSYILDILNILKC-----DKVRFLLINAASSL 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  +D  S+          Y+LMPMR+
Sbjct: 350 QI--EDHSSQ-------MVSYILMPMRL 368


>gi|304309654|ref|YP_003809252.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma
           proteobacterium HdN1]
 gi|301795387|emb|CBL43585.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma
           proteobacterium HdN1]
          Length = 367

 Score =  202 bits (514), Expect = 8e-50,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 205/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  IL+ L     ++ER+ T P+  ++LL  +   L +  +  E+E+   I   
Sbjct: 1   MKFKVIREGILKPLQQLAGLVERRQTKPILANILLVLDGNALTLTGTDTEVELRARIQLG 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T+ A  L DI + L +GA++    +++   +  +  G S F L + P  +FP
Sbjct: 61  EEYPFGRATLPAKKLLDICKSLPEGAELLIEADDQ---KALLRSGRSKFSLVALPPDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++ ++   F +    L+ L+E+T FAMA +++R+YLNG+   ++E +L+  AVATDGH
Sbjct: 118 DLEDGQFEVQFSIQQRYLRELIEKTGFAMAQQDVRFYLNGMLLEVSENNLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + DI+ Q A +   +VPRK + EI ++  S D  + +SLS + +      L  + 
Sbjct: 176 RLALGDRDILWQGAGIRQAVVPRKGILEIPKLFGSDDGELLISLSGNHLRAETADLRFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+D ++P Y  V+P   ++ +  +   LRQ + RV I+S+ + + V+L+     L    
Sbjct: 236 KLLDAKYPEYGRVLPKPGERYIVADRDALRQCLLRVGILSNEKFRGVRLTFQCGVLVARA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A ES+ V YN    +I FN  YLL+++  + S     + V   L  +N++  I
Sbjct: 296 SNPEQEEAEESVVVDYNGADTEIAFNIGYLLDVLGVVKS-----ESVSISLADANNTALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R          D+K    YV+MPMRI
Sbjct: 351 R-------ETVDDKT--LYVVMPMRI 367


>gi|58584686|ref|YP_198259.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419002|gb|AAW71017.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 393

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 125/384 (32%), Positives = 215/384 (55%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + R+ +L  L     ++ER+N I +   + ++A  G +++ A+  +I I  ++ A 
Sbjct: 29  MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 88

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VSAH L+DIV+KL     ++F + N+ G ++ IS+G++NF L +   ++ P 
Sbjct: 89  VLTEGEVKVSAHTLHDIVKKLPADLDVNF-EVNDQG-KLLISYGNANFSLPNVVLNKLPV 146

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E ++ Y F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 147 LEEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 204

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L++L   D  + + LS+ +I        +  +
Sbjct: 205 LSCVKKPKPQNINSEFGVIIPRKTVIELLKVLDDCDE-INIKLSDRKIKFTCGKYIIISK 263

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP S DK++ V  + L   +DRVS++ S RI++++ SL    L +  +
Sbjct: 264 LIDGAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSN 323

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A E + V YN  P++I FN +YLL+ +  I S      +  F L  S+S+  I 
Sbjct: 324 SQECSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIKS------KCKFSLSDSSSATVI- 376

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
                     +N  N  Y++MP+R
Sbjct: 377 --------TDENDPNVLYIVMPVR 392


>gi|148980123|ref|ZP_01815903.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3]
 gi|145961424|gb|EDK26730.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3]
          Length = 356

 Score =  201 bits (512), Expect = 1e-49,   Method: Compositional matrix adjust.
 Identities = 110/363 (30%), Positives = 202/363 (55%), Gaps = 21/363 (5%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV-CGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++L++  D +L + A+  E+E+   +    D   GSITV +    DI R L 
Sbjct: 14  RPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEAGSITVPSRKFLDICRGLP 73

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           D + I+   +   G  V +  G S F L + P ++FP+ ++        +  + L+ L+E
Sbjct: 74  DSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIEDWSSEVEVSVTQAELRGLIE 130

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
           +T F+MA +++RYYLNG+ F I  E   L +VATDGHR+AV++  + A  A+   IIVPR
Sbjct: 131 KTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGHRMAVSQAQLGADFAQ-KQIIVPR 187

Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262
           K V E++++L + +  V + +  S +   + +   + +L+DG FP+Y+ V+P +  K L 
Sbjct: 188 KGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPDYRRVMPQNTTKTLE 247

Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
             C  LR A  R +I+S+ + + V+++L+  ++ +T +NP+  +A E ++V +    ++I
Sbjct: 248 AGCDELRSAFSRAAILSNEKFRGVRVNLADSEMRITANNPEQEEAEEMLDVTFEGDALEI 307

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            FN  Y+L++++ +       ++V   +  +N+S  I     DS         A YV+MP
Sbjct: 308 GFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENAQDDS---------AMYVVMP 353

Query: 383 MRI 385
           +R+
Sbjct: 354 IRL 356


>gi|299768252|ref|YP_003730278.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1]
 gi|298698340|gb|ADI88905.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1]
          Length = 382

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 211/401 (52%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + ++    +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLLE++  +       D
Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNVPLEMSFNAQYLLEVLGVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVNMSMSEANQSVLVQDPAHTDQT---------YVVMPMRV 382


>gi|170719189|ref|YP_001746877.1| DNA polymerase III subunit beta [Pseudomonas putida W619]
 gi|169757192|gb|ACA70508.1| DNA polymerase III, beta subunit [Pseudomonas putida W619]
          Length = 367

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 213/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L +   I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDVLIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+T
Sbjct: 115 DFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    +  +   +IVPRK + E+ R+L+  +  V + L +  I  N    +
Sbjct: 173 DGHRLALCSMSAAIEQDERHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRANTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V Y+   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVDYDGASLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++    D         ++ YV+MPMR+
Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367


>gi|241667602|ref|ZP_04755180.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876147|ref|ZP_05248857.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842168|gb|EET20582.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 367

 Score =  201 bits (511), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 221/389 (56%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   N+  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L D + I F  ++    +V I   +S F L S     +P 
Sbjct: 61  CNTNVKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+   L+ ++ R SI+++ + + V+L++S  ++ 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +NPD  KA + + V YN+  M+ICFNYKYLL+II N+ S+E     +   LD+ N S
Sbjct: 294 LSANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDII-NVLSEET----MTIYLDNPNMS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          KD K N+ +++MPM+I
Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367


>gi|167627067|ref|YP_001677567.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597068|gb|ABZ87066.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 367

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 221/389 (56%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   N+  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L D + I F  ++    +V I   +S F L S     +P 
Sbjct: 61  CNTNIKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+   L+ ++ R SI+++ + + V+L++S  ++ 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +NPD  KA + + V YN+  M+ICFNYKYLL+II N+ S+E     +   LD+ N S
Sbjct: 294 LSANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDII-NVLSEET----MTIYLDNPNMS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          KD K N+ +++MPM+I
Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367


>gi|88607712|ref|YP_505645.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ]
 gi|88598775|gb|ABD44245.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ]
          Length = 375

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 212/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ R D+L+ L +   +IER+N+I V   V ++A   ++E  ++  +I I   + A+
Sbjct: 9   LDFSISREDLLQALNYVSSVIERRNSIAVLSCVRIEAKGSVIEFTSTDLDISIEACVQAN 68

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G    SA LLYDIVRKL   A + F K N+   ++ ++ G++ FYL      +FP 
Sbjct: 69  VATGGVAVASAQLLYDIVRKLSGEADVRF-KLND--GKLLVACGNARFYLHVISPEKFPD 125

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +       F++ ++ L  L+ +T F+M+ EE RY L G++FH+++E   LC VATDGHR
Sbjct: 126 IEGSSLDCGFDIPATSLAELLNKTKFSMSVEESRYNLRGVYFHVDDE--MLCCVATDGHR 183

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           L++A++     +    ++I+PRK V E+L+I+          V V +S  +I    +   
Sbjct: 184 LSLAKISKPEGLHSGIAVIIPRKTVNEVLKIIGHGGGDAAQMVSVGISNRKICFRYKGYF 243

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M  +++DG FP+Y  +IP      + ++ + L+ AVDRVS++   +++A+KLS +  KL 
Sbjct: 244 MVSKVLDGTFPDYAAIIPTECGNSVSIDASVLQSAVDRVSVVVFDKVKAIKLSFTEGKLV 303

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  + D G A E ++V Y    + I  N +YL+E++ +I        E+VF    S+ S
Sbjct: 304 LSSASSDQGDASEELSVDYEGDEVVIGLNARYLMEVLGSIKG----VCEIVF----SDGS 355

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  KD +            +++MPMRI
Sbjct: 356 AAVLVKDGE---------YGMHIVMPMRI 375


>gi|332288918|ref|YP_004419770.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179]
 gi|330431814|gb|AEC16873.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179]
          Length = 366

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+  V R ++L+ L   C ++  + ++PV  ++L+Q +   L +  S  E+E++  +   
Sbjct: 1   MQFIVARENLLKPLQQVCGVLNNRPSLPVLNNILVQIDGDRLTLTGSDLEVELSTFVQLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S    G+ T+ A    DI R L + AQI+   EN+    V ++   S F L + P   +P
Sbjct: 61  SSSENGTFTIPARKFLDICRSLNEDAQITVNYEND---RVLVTAERSKFNLATLPAESYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +      +  SVL+ ++E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTQLDVDVELNIEQSVLRRVMEATQFSMANQDARYFLNGMKFETENNVLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +   +    +IIVPRK V E++R+L S   +  + + +S I +++ ++  + 
Sbjct: 176 RLAVCGIQLQQNVPDY-AIIVPRKGVIELMRLLDSNSENAYIRMGQSNIQVHLNNVIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P + D+ L V+  +L+QA  R +I+S+ R + V+L + +++L +  
Sbjct: 235 KLIDGRFPDYRRVLPKNADRILEVDWNSLKQACIRAAILSNERFRGVRLIIEANQLKILA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NPD  +A E ++V Y   PM++ FN  Y+L++++ +         V  RL  + SS  I
Sbjct: 295 QNPDQEEAEEVIDVSYQGEPMEVGFNVSYILDVLNALKC-----QSVRMRLTDATSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++          NA YV+MPMR+
Sbjct: 350 EDCEQS---------NAEYVIMPMRL 366


>gi|212632926|ref|YP_002309451.1| DNA polymerase III subunit beta [Shewanella piezotolerans WP3]
 gi|212554410|gb|ACJ26864.1| DNA polymerase III, beta subunit [Shewanella piezotolerans WP3]
          Length = 366

 Score =  201 bits (510), Expect = 2e-49,   Method: Compositional matrix adjust.
 Identities = 122/389 (31%), Positives = 214/389 (55%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSAHSLKLTGTDLEVELVGEVLLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V  G  TV A    DIV+ L D  ++    +EN L     +  G S F L + P  E+
Sbjct: 61  GEVFEGRTTVPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E    F L    +K+L++ T F+MA +++RYYLNG+      E   L A+ATDG
Sbjct: 117 PNVEAFEAELEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   I A + +   +IVPRK V E++R     +  V +++ ++ I     +   +
Sbjct: 175 HRLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEGDELDVTIAIGDNAIRATTATAVFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ + +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKIVIASRQQLKQALLRASILSNEKFRGVRVQLENNLIKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  
Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           I           DN V  ++ YV+MPMR+
Sbjct: 349 I-----------DNHVEQDSMYVVMPMRL 366


>gi|288939766|ref|YP_003442006.1| DNA polymerase III subunit beta [Allochromatium vinosum DSM 180]
 gi|288895138|gb|ADC60974.1| DNA polymerase III, beta subunit [Allochromatium vinosum DSM 180]
          Length = 366

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 206/387 (53%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    R  +L  L     ++ER+ T+P+  ++L+ A  G + +  +  E+E+  +  A 
Sbjct: 1   MEFVANREIVLPALNKVIGVVERRQTLPILGNLLVVARAGRVTLTGTDLEVEVKTSFEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G  T+ A  L DI R L +GA+I    ++E      ++ G   F L   P ++FP+
Sbjct: 61  IQQEGETTIPARKLVDICRNLSEGAEIRLRVKDE---RCVVTSGRGRFTLGLLPAADFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              EE  + F++  S LK L+++T FAMA +++RYYLNG+   ++     L AVATDGHR
Sbjct: 118 MDLEEGGFDFQIQESQLKRLLDKTAFAMAQQDVRYYLNGLLLELHAT--VLIAVATDGHR 175

Query: 181 LA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA  V  +D+     +   +IVP K V E+ R L S D  + + LSE  + + + +++M+
Sbjct: 176 LAKFVTPLDLTLDTER--QVIVPNKTVMELKRQLGSSDDPISIRLSERSLRVVVGAMTMT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG +P Y+ VIP  + +   V    L++A+ R SI+S+ + + V+LS     L + 
Sbjct: 234 SKLVDGRYPEYERVIPGHSGRTATVEKDALKRALSRTSILSNEKYRGVRLSFDPGTLKLL 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+  +A E + + Y+  P+ I FN  YL++++  I  DE     V+     +N S  
Sbjct: 294 AHNPEQEEAEEEIELEYDGEPISIGFNVAYLMDVLGVI--DETA---VIIHFQDANGSSI 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            RG   +S+          +V+MPMR+
Sbjct: 349 WRGVGGESET---------FVVMPMRL 366


>gi|33151999|ref|NP_873352.1| DNA polymerase III subunit beta [Haemophilus ducreyi 35000HP]
 gi|33148221|gb|AAP95741.1| DNA polymerase III beta chain [Haemophilus ducreyi 35000HP]
          Length = 367

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 124/387 (32%), Positives = 212/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M++T+ R  +L+ L   C ++  + T+PV  ++LL  N   L +  +  E+E+T    + 
Sbjct: 1   MQLTITREQLLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLEVELTTQAELE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E +      I    S F L + P S++
Sbjct: 61  QAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQDRAL---IRADRSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSMEQSTLSRLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ RILS     V++ +  + + +++  +  +
Sbjct: 176 HRLAVCTMALSQELTTH-SVIVPRKAVLELSRILSMTADPVRLEIGTNNLRISMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ +   V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQNTAMEIGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    +D +N+      A YV+MPMR+
Sbjct: 350 I----EDCENS-----TAEYVIMPMRL 367


>gi|169794208|ref|YP_001712001.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE]
 gi|184156324|ref|YP_001844663.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
           ACICU]
 gi|213155389|ref|YP_002317434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057]
 gi|215481763|ref|YP_002323945.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|239503908|ref|ZP_04663218.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB900]
 gi|260558094|ref|ZP_05830305.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|301345944|ref|ZP_07226685.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB056]
 gi|301512868|ref|ZP_07238105.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB058]
 gi|301594681|ref|ZP_07239689.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB059]
 gi|332854714|ref|ZP_08435501.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150]
 gi|332865594|ref|ZP_08436434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113]
 gi|332873308|ref|ZP_08441263.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059]
 gi|169147135|emb|CAM84994.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE]
 gi|183207918|gb|ACC55316.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
           ACICU]
 gi|193075922|gb|ABO10499.2| DNA polymerase III [Acinetobacter baumannii ATCC 17978]
 gi|213054549|gb|ACJ39451.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057]
 gi|213987621|gb|ACJ57920.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260408448|gb|EEX01755.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|322506193|gb|ADX01647.1| DNA polymerase III, beta chain [Acinetobacter baumannii 1656-2]
 gi|332727871|gb|EGJ59273.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150]
 gi|332735246|gb|EGJ66323.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113]
 gi|332738514|gb|EGJ69386.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059]
          Length = 382

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 210/401 (52%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D
Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|325275333|ref|ZP_08141284.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51]
 gi|324099524|gb|EGB97419.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51]
          Length = 367

 Score =  200 bits (509), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 121/389 (31%), Positives = 212/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLLKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+T
Sbjct: 115 DFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    +      +IVPRK + E+ R+L+  +  V + L +  I       +
Sbjct: 173 DGHRLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R SI+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKVVVGDRQALREAFSRTSILSNEKYRGIRLQLAAGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V Y+   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVDYDGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++    D         ++ YV+MPMR+
Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367


>gi|328675184|gb|AEB27859.1| DNA polymerase III beta subunit [Francisella cf. novicida 3523]
          Length = 367

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 222/389 (57%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L + + I F + NE   +V I   +S F L S     +P 
Sbjct: 61  CNTSIKLALNADKIYNIVRSLNENSMIDF-RVNE--NKVTIVSNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +NPD  KA + + V YN+  M+ICFNYKYLL+II N+ S+E     +   LD+ N S
Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQAMEICFNYKYLLDII-NVLSEET----MTIYLDNPNMS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          KD K N+ +++MPM+I
Sbjct: 349 ALV----------KDEKDNSLFIIMPMKI 367


>gi|169632031|ref|YP_001705767.1| DNA polymerase III, beta chain [Acinetobacter baumannii SDF]
 gi|169150823|emb|CAO99423.1| DNA polymerase III, beta chain [Acinetobacter baumannii]
 gi|323516069|gb|ADX90450.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 382

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 210/401 (52%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D
Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNAPLEMSFNAQYLLDVLGVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|260553771|ref|ZP_05826041.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624]
 gi|260405075|gb|EEW98575.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624]
          Length = 382

 Score =  200 bits (508), Expect = 3e-49,   Method: Compositional matrix adjust.
 Identities = 120/401 (29%), Positives = 209/401 (52%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNGQALTITGSDLEVELVASTALS 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L DI + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLEAGETTVPARKLMDICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLNTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEILASSSSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D
Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNTPLEMSFNAQYLLDVLGVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|268628305|gb|ACZ13551.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  200 bits (508), Expect = 4e-49,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFVFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSQNQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628303|gb|ACZ13550.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
 gi|268628307|gb|ACZ13552.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  199 bits (507), Expect = 5e-49,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFVFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628309|gb|ACZ13553.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|303251823|ref|ZP_07337994.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249124|ref|ZP_07531131.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649253|gb|EFL79438.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854412|gb|EFM86608.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 367

 Score =  199 bits (506), Expect = 6e-49,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 214/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI R L + + IS  F+E+       +    S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA +++RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDVRYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  +         A YV+MPMR+
Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367


>gi|26986756|ref|NP_742181.1| DNA polymerase III subunit beta [Pseudomonas putida KT2440]
 gi|148545261|ref|YP_001265363.1| DNA polymerase III subunit beta [Pseudomonas putida F1]
 gi|60392201|sp|P0A120|DPO3B_PSEPK RecName: Full=DNA polymerase III subunit beta
 gi|60392202|sp|P0A121|DPO3B_PSEPU RecName: Full=DNA polymerase III subunit beta
 gi|24981347|gb|AAN65645.1|AE016191_2 DNA polymerase III, beta subunit [Pseudomonas putida KT2440]
 gi|45691|emb|CAA32894.1| unnamed protein product [Pseudomonas putida]
 gi|148509319|gb|ABQ76179.1| DNA polymerase III, beta subunit [Pseudomonas putida F1]
 gi|313496419|gb|ADR57785.1| DnaN [Pseudomonas putida BIRD-1]
          Length = 367

 Score =  199 bits (506), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 211/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+T
Sbjct: 115 DFPTVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    +      +IVPRK + E+ R+L+  +  V + L +  I       +
Sbjct: 173 DGHRLALCSMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V Y    ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++    D         ++ YV+MPMR+
Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367


>gi|303250481|ref|ZP_07336678.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251523|ref|ZP_07533430.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307256023|ref|ZP_07537811.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|302650469|gb|EFL80628.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860987|gb|EFM92993.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306865445|gb|EFM97340.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 367

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 121/388 (31%), Positives = 214/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L + A+  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTATDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI R L + + IS  F+E+       +    S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  +         A YV+MPMR+
Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367


>gi|293611383|ref|ZP_06693679.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|292826255|gb|EFF84624.1| DNA polymerase III [Acinetobacter sp. SH024]
          Length = 382

 Score =  199 bits (505), Expect = 7e-49,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 211/401 (52%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + ++    +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D
Sbjct: 296 GVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLDVLGVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|167031025|ref|YP_001666256.1| DNA polymerase III subunit beta [Pseudomonas putida GB-1]
 gi|166857513|gb|ABY95920.1| DNA polymerase III, beta subunit [Pseudomonas putida GB-1]
          Length = 367

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 120/389 (30%), Positives = 211/389 (54%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    + +   ++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+T
Sbjct: 115 DFPTAEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVST 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    +      +IVPRK + E+ R+L+  +  V + L +  I       +
Sbjct: 173 DGHRLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L 
Sbjct: 233 FTSKLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLK 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V Y    ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 293 IQANNPEQEEAEEEISVDYKGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++    D         ++ YV+MPMR+
Sbjct: 348 ALLQEAGND---------DSSYVVMPMRL 367


>gi|113460283|ref|YP_718342.1| DNA polymerase III subunit beta [Haemophilus somnus 129PT]
 gi|170718298|ref|YP_001783357.1| DNA polymerase III subunit beta [Haemophilus somnus 2336]
 gi|112822326|gb|ABI24415.1| DNA polymerase III, beta subunit [Haemophilus somnus 129PT]
 gi|168826427|gb|ACA31798.1| DNA polymerase III, beta subunit [Haemophilus somnus 2336]
          Length = 366

 Score =  199 bits (505), Expect = 8e-49,   Method: Compositional matrix adjust.
 Identities = 123/388 (31%), Positives = 210/388 (54%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---I 57
           M+  V R  +L+ L   C ++  +   P+  +VLLQ    +L I  +  E+E++     I
Sbjct: 1   MQFIVSREHLLKPLQQVCGVLSSRPNFPILNNVLLQIEGNVLRITGTDLEVELSTQAQLI 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            AS D  GS T+ A    DI R   D A+I+   E E      +  G S F L + P  E
Sbjct: 61  QASQD--GSYTIPAKKFLDICRSFPDEAEITVIFEEERAL---VRSGRSKFNLTALPADE 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 116 YPNLADWQSEVDFYLPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  Q     ++I+PRK + E++R+L + + +  V +  + + +++ S+  
Sbjct: 174 GHRLAVCTIPL-EQDLHTHAVILPRKGILELMRLLENSEHAAHVQIGTNNLRIDLGSIIF 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P +    +  N   L+QA  R++I+SS +++ V+L L+S++L +
Sbjct: 233 TSKLIDGRFPDYRRVLPRNATHIMEGNWELLKQAFARMAILSSDKVKTVRLQLTSNQLKI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T  NP+   A E ++V YN   M++ FN  Y+L++++ +   +V    + F    ++SS 
Sbjct: 293 TATNPEQEVAEEILDVIYNGADMEVGFNVSYILDVLNALKCQQV---RLCF--TDASSSC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D +S         A YV+MPMR+
Sbjct: 348 LLEDADDES---------AEYVVMPMRL 366


>gi|50083299|ref|YP_044809.1| DNA polymerase III beta [Acinetobacter sp. ADP1]
 gi|49529275|emb|CAG66987.1| DNA polymerase III, beta chain [Acinetobacter sp. ADP1]
          Length = 382

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 119/401 (29%), Positives = 210/401 (52%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +QAN   L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L DI + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I++  L+  AV 
Sbjct: 118 DYPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-- 233
           TDGHRLA+ EV   +   +    IVPRKAVGE+ R+LS +D  + + +    +++ I   
Sbjct: 176 TDGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIA 235

Query: 234 ---------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
                    ++  + +LIDG+FP+Y+ VIP   DK +++     +Q++ RV+I+S+ +++
Sbjct: 236 NRDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ + D L +  +NP+  +AIE + + Y +  +++ FN +YLL+++  +       D
Sbjct: 296 GVFLNFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVSMSMTEANQSVLVQDAAHPDQT---------YVVMPMRV 382


>gi|268628293|gb|ACZ13545.1| DNA polymerase III beta chain [Xenorhabdus beddingii]
          Length = 276

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|260912770|ref|ZP_05919256.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis
           ATCC 43325]
 gi|260633148|gb|EEX51313.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis
           ATCC 43325]
          Length = 366

 Score =  198 bits (504), Expect = 9e-49,   Method: Compositional matrix adjust.
 Identities = 125/386 (32%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59
           M+  V R ++L+ L   C ++  +  IPV  +VLLQ N   L I  +  E+E+ T +   
Sbjct: 1   MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQINGDCLVITGTDLEVELSTQSALL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S DV G+ T+ A    DI R L + A+IS   E +      +  G S F L + P  E+P
Sbjct: 61  STDVKGNFTIPAKKFLDICRSLPENAEISVSFEEDRAI---VKSGRSKFNLSTLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F +  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTIEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E++R+L + D   ++ +  + + + + ++  + 
Sbjct: 176 RLAVCTIAL-EQDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIELGNIIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + L  +   L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEADWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +         V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYIGEEMEVGFNVSYILDVLNALKC-----QRVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S         A YV+MPMR+
Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366


>gi|257464819|ref|ZP_05629190.1| DNA polymerase III subunit beta [Actinobacillus minor 202]
 gi|257450479|gb|EEV24522.1| DNA polymerase III subunit beta [Actinobacillus minor 202]
          Length = 367

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 211/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M  T+ R  +L  L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MLFTITREQLLRPLQQVCGVLASRPTLPVIGNLLLEVEGERLSMTGTDLEVELTTQAQLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V+     T+ A    DI + L D + IS   E +      I  G S F L + P S++
Sbjct: 61  QAVNFSEKFTIPAKKFLDIAKSLPDDSVISIAFEADKAV---IKAGRSKFSLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  +      F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++A   S+IVPRKAV E+ R++S+    V++ +  S I +++  +  +
Sbjct: 176 HRLAVCTMALTQELASH-SVIVPRKAVLELSRLVSTSHDIVRLEIGSSNIRISMNGIVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L  +   L++A+ R +I+S+ + + V+LSLS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLSDNILKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  Y+L++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    +D  NN      A YV+MPMR+
Sbjct: 350 I----EDCDNN-----TAEYVIMPMRL 367


>gi|268628311|gb|ACZ13554.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  198 bits (504), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 104/269 (38%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|108761971|ref|YP_628517.1| DNA polymerase III subunit beta [Myxococcus xanthus DK 1622]
 gi|108465851|gb|ABF91036.1| DNA polymerase III, beta subunit [Myxococcus xanthus DK 1622]
          Length = 368

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 209/386 (54%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +   ++ + L  A  I+ERK T+P+  +VL+ AN G + + A   +I +    PA 
Sbjct: 1   MEFRIAADELKKALYRAQGIVERKTTMPILANVLVTANKGGITVTAFDLDIGVVSEHPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T+SA  ++DIV+ L D AQ++  K       V+IS G ++F +      E+P 
Sbjct: 61  VIKTGAVTLSAKYVFDIVQNLPD-AQVTLKKLAN--NYVDISSGSAHFKIVGMAAEEYPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +EE     ++  + L  ++++T FA++++E RY LNG+FF       K+  VATDGHR
Sbjct: 118 LPKEENAPLVQVGGNTLLEMIKKTQFAISSDETRYILNGVFFEPQSTG-KVRMVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E ++         +I+PRK + E+ R+L  + D+   +  +E+        L+M +
Sbjct: 177 LALVERELPGDFKLKSGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG+FP YQ VIP   +K + V    L +++ R++++S+ +  AV++ L  ++L +T 
Sbjct: 237 RLIDGQFPEYQRVIPKEGEKIVLVPKVRLLESLKRIALLSADKSNAVRIGLEENQLIITA 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NPD+G+A + + + Y    + I FN +YL++++    +     DEV F L   +S   +
Sbjct: 297 SNPDLGEAKDVLELAYRGNGITIGFNARYLMDVLAVTET-----DEVSFELGDEHSPGVL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                      D    A  V+MPMR+
Sbjct: 352 HAPG-------DRSFTA--VVMPMRV 368


>gi|170724372|ref|YP_001758398.1| DNA polymerase III subunit beta [Shewanella woodyi ATCC 51908]
 gi|169809719|gb|ACA84303.1| DNA polymerase III, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 366

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 116/387 (29%), Positives = 213/387 (55%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V  G  T+ A    DIV+ L D  ++    +EN L     +  G S F L + P  E+
Sbjct: 61  GEVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQENRL----LLRSGRSRFTLATLPAEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  +    F +    LK+L++ T F+MA +++RYYLNG+      E   L A+ATDG
Sbjct: 117 PNVEAFQAEIEFTINQGTLKSLIDATQFSMANQDVRYYLNGLLLET--EGNVLRAIATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA++   I   + +   +IVPRK V E+ R+   ++  + +++ ++ I     S   +
Sbjct: 175 HRLALSHRQIQDTLPE-KQVIVPRKGVVELQRLFEGEELDITIAIGDNAIRATTASAVFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L  + + +T
Sbjct: 234 SKLVDGRFPDYRRVLPKGGDKVVIASRNHLKQALLRASILSNEKFRGVRVQLEENLIKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  
Sbjct: 294 ANNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSAL 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    ++         ++ YV+MPMR+
Sbjct: 349 IENHIEE---------DSMYVVMPMRL 366


>gi|71279230|ref|YP_266784.1| DNA polymerase III subunit beta [Colwellia psychrerythraea 34H]
 gi|71144970|gb|AAZ25443.1| DNA polymerase III, beta subunit [Colwellia psychrerythraea 34H]
          Length = 367

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 130/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           MK ++ R  +L+ L      +ERK+T+P+  ++L + +   L + A+  E+E+   A   
Sbjct: 1   MKFSLNRELLLKPLLLVSGAVERKSTLPILSNILFEVSGQSLTLTATDLELEMVAYAEIQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G IT+ A  L DI + L + + ISF   +E    + +S G S + L + P  +FP
Sbjct: 61  NQGDDGKITIPARKLLDICKSLPESSLISFEVIDE---TIKLSSGRSKYSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E +    F+L  S    L+E THF+MA +++RYYLNG+   I  E  ++ +VATDGH
Sbjct: 118 NIEEWKGDVEFQLLKSEFLRLIESTHFSMANQDVRYYLNGM--SIESEGNEIRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ ++           +IVPRK + EI+R+L+  D +V+V L  + I +     S + 
Sbjct: 176 RLAICKISNETLALPARQVIVPRKGILEIIRLLAPVDEAVQVFLGSNHIRIIDSEFSFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK    N   LRQ + R SI+S+ + + V+L+ S   L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRNGDKVFETNKDALRQVLSRASILSNEKFKGVRLNFSDTNLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + + +    ++I FN  Y+L+++  I      D+ V F L  +NSSV I
Sbjct: 296 NNPEQEQAEEEIEINFPYGELEIGFNVSYVLDVLSAIK-----DENVKFTLADANSSVVI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G    S N +     A YV+MPMR+
Sbjct: 351 EG----SSNGE-----ALYVVMPMRL 367


>gi|90019651|ref|YP_525478.1| DNA polymerase III subunit beta [Saccharophagus degradans 2-40]
 gi|89949251|gb|ABD79266.1| DNA polymerase III, beta subunit [Saccharophagus degradans 2-40]
          Length = 367

 Score =  198 bits (503), Expect = 1e-48,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 208/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  IL+ L     ++ER+ T+PV  +VL+      L +  +  E+EI G +   
Sbjct: 1   MKFIVSRETILKPLQLVAGVVERRQTLPVLANVLIVLEGEQLSLTGTDLEVEIVGRVTVD 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G ITV A    DI R L DG+ I F  +++   +V +  G S F L S   +EFP
Sbjct: 61  QAISEGEITVPAKKFLDICRALPDGSVIEFTLDDQ---KVTVKSGRSRFTLSSLSANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++     +F      +K L++RT FAMA +++RYYLNG+ + +    L++  V+TDGH
Sbjct: 118 AVEQGSNDINFSCEQKEVKRLIDRTAFAMAQQDVRYYLNGMLWEVRAGALRV--VSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    I   +A+    I+PRK V E+ R+L+  + +V++++  + I       + + 
Sbjct: 176 RLAMCTRPINIDVAEPVQAILPRKGVIELSRLLNDSEENVELTMGPNHIRATTTEYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +      L+QA  R +I+S+ + + V+L L + +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKIVLGERAVLKQAFARTAILSNEKYRGVRLLLETGQLTIIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A + + V Y    +++ FN  YL ++ + + +     D++   L  SNSS  +
Sbjct: 296 NNPEQEEAEDQVAVEYEGDSIEVGFNVSYLQDVTNVLDT-----DKIKMTLSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +   N D    + YV+MPMR+
Sbjct: 351 -----EEPENAD----SVYVVMPMRL 367


>gi|53729133|ref|ZP_00134099.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207490|ref|YP_001052715.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           L20]
 gi|165975459|ref|YP_001651052.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149271|ref|YP_001967796.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307244803|ref|ZP_07526902.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249201|ref|ZP_07531198.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262582|ref|ZP_07544213.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096282|gb|ABN73110.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875560|gb|ABY68608.1| DNA polymerase III beta chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914402|gb|ACE60654.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306854248|gb|EFM86454.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858725|gb|EFM90784.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306872080|gb|EFN03793.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 367

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 213/388 (54%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI R L + + IS  F+E+       +    S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  +         A YV+MPMR+
Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367


>gi|256821230|ref|YP_003145193.1| DNA polymerase III subunit beta [Kangiella koreensis DSM 16069]
 gi|256794769|gb|ACV25425.1| DNA polymerase III, beta subunit [Kangiella koreensis DSM 16069]
          Length = 367

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 124/390 (31%), Positives = 210/390 (53%), Gaps = 28/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R  +L  L      +E++ T+PV  +VL+  +D  L + A+  E+E+     A 
Sbjct: 1   MRFTISRDQLLAPLQLVSGAVEKRQTLPVLSNVLMVVDDSKLSLTATDLEVELK----AQ 56

Query: 61  VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           VD+      G ITV A  L DIVR L DG  +   K  +  T + +    S F L +   
Sbjct: 57  VDLEGEFEPGEITVPARKLLDIVRSLGDGENV---KIEQSETRLKVITPSSRFSLSTMSA 113

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +EFP+  E   + S EL   VLK+L+E+T FAMA +++RYYLNG+ F  + +  KL  VA
Sbjct: 114 NEFPNLDETVSLASLELTQDVLKSLIEKTQFAMAQQDVRYYLNGMLFEFDND--KLTTVA 171

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA++            S I+PRK V E+ R+L   D ++ ++L  + I +     
Sbjct: 172 TDGHRLALSRAKASIDADDKISAIIPRKGVTELARLLEHSDDNITLNLGSNHIKVIGPDY 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           S + +L+DG FP Y+ V+P + DK +  +    ++++ R SI+ + + + V+  L+++++
Sbjct: 232 SFTSKLVDGRFPEYEKVLPRNGDKIVIADRELFKESLSRASILCNEKFRGVRFMLTNEQV 291

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +  +NP+  +A     V Y    ++I FN  Y++++++ I + +V   ++ F +D +NS
Sbjct: 292 RLHANNPEQEEAEVEFGVDYQGSDLEIGFNVSYMIDVMNTIKTPQV---KLTF-ID-ANS 346

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  I   D            + YV+MPMR+
Sbjct: 347 STLIEEVDGGE---------SVYVVMPMRL 367


>gi|88798538|ref|ZP_01114122.1| DNA polymerase III subunit beta [Reinekea sp. MED297]
 gi|88778638|gb|EAR09829.1| DNA polymerase III subunit beta [Reinekea sp. MED297]
          Length = 369

 Score =  197 bits (502), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 120/390 (30%), Positives = 218/390 (55%), Gaps = 27/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           ++ ++ R  +L+ L     ++E++ T+PV  +VLL+     L +  +  E+E+ G +   
Sbjct: 2   IQFSLAREQLLKPLQLVSGVVEKRQTLPVLSNVLLEVEGNQLALTGTDLEVELIGRVELS 61

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PAS    G+ITV A    DIVR L + A IS  +  +    V ++ G S F L S P +
Sbjct: 62  EPAS---DGAITVPAKKFLDIVRSLPEDAIISLQQTED---RVQVASGRSKFTLSSLPAT 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP+ +++E    + L  ++L  L++ T FAMA +++RYYLNG+   +N+  ++   V+T
Sbjct: 116 EFPNIEQDENAQEYRLPQNLLSQLIDATAFAMAQQDVRYYLNGMSVELNQSLVR--TVST 173

Query: 177 DGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           DGHRLA++   +    + +   +IVPRK + E+ R+LS  D  V++ +  + +    +  
Sbjct: 174 DGHRLAMSSRHVDGLNVPERKQVIVPRKGILELNRLLSDDDQPVQLYIGSTHLRTTTDEF 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           + + +L+DG+FP+Y+ VIP   DKE+  +   ++    R +I+++ + + V++SLS   L
Sbjct: 234 TFTTKLVDGKFPDYERVIPRGGDKEVVGDRQVMKAIFSRAAILANEKYRGVRMSLSEGSL 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +  +NP+  +A  ++ V Y+   +++ FN  YLL++++ I       ++V F L  +NS
Sbjct: 294 VVKANNPEQEEAEVAVEVDYSGPELEVGFNVSYLLDVMNVIRG-----EQVRFVLADANS 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +   D DS         + YV+MPMR+
Sbjct: 349 SALLTDFDDDS---------SMYVVMPMRL 369


>gi|15603025|ref|NP_246097.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721508|gb|AAK03244.1| DnaN [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 366

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59
           M+  V R ++L+ L   C ++  +  IPV  +VLLQ     L I  +  E+E+ T     
Sbjct: 1   MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQIRGERLVITGTDLEVELSTETALL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             DV GS T+ A    DI R L + A+IS   E +      +  G S F L + P  E+P
Sbjct: 61  RTDVQGSFTIPAKKFLDICRSLPEEAEISVSFEEDRAI---VKSGRSKFNLSTLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E++R+L + D   ++ +  + + +++ ++  + 
Sbjct: 176 RLAVCTIAL-EQDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIDLGNIIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + L      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEAEWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +         V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYVGEEMEVGFNVSYILDVLNALKC-----QRVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D  S         A YV+MPMR+
Sbjct: 350 EDCDDAS---------AEYVIMPMRL 366


>gi|268628295|gb|ACZ13546.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
 gi|268628297|gb|ACZ13547.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
 gi|268628299|gb|ACZ13548.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
          Length = 276

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|58697440|ref|ZP_00372737.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536133|gb|EAL59745.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 353

 Score =  197 bits (501), Expect = 2e-48,   Method: Compositional matrix adjust.
 Identities = 125/371 (33%), Positives = 210/371 (56%), Gaps = 20/371 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+V   G + +SAH 
Sbjct: 2   LSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAATVLTEGEVKISAHT 61

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+ +E+ Y + F L 
Sbjct: 62  LHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPALEEDNYKHDFILL 119

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHRL+  +      I 
Sbjct: 120 NTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHRLSCIKRPKPGNIN 177

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
               +I+PRK V E+L+IL   +  +KV LS+ +I L      +  +LIDG FPNY+ VI
Sbjct: 178 GEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISKLIDGTFPNYKAVI 236

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313
           P S DK + +    L   +DRVS++ S +++++K SL    L +  ++ +   A ES+ V
Sbjct: 237 PASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSNSQECSDATESIEV 296

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
            YNE P++I FN +YLL+++        + ++  F L   NS+  I  +D  S       
Sbjct: 297 DYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIITDEDDSS------- 343

Query: 374 VNAFYVLMPMR 384
               YV+MPMR
Sbjct: 344 --VLYVVMPMR 352


>gi|71905644|ref|YP_283231.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB]
 gi|71845265|gb|AAZ44761.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB]
          Length = 368

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 217/387 (56%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASV 61
           I  +R  +L  L     I+ER++T+P+  +VLL+     L + A+  EI+IT +   A  
Sbjct: 4   IKTQRDTLLAPLQSVSGIVERRHTLPILSNVLLEKKGDRLTLLATDIEIQITTSTECAGG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS- 120
           +  G++TV A  + +I+R L D +++S   E++    + +  G S F LQ+ P  +FP  
Sbjct: 64  EGDGAVTVGARKMQEILRSLPDTSEVSLVLEDK---RLQVRAGKSRFSLQTLPADDFPRM 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T  E     F ++    + L+ +T ++MA +++RYYLNG+   +  ++L+  AVATDGHR
Sbjct: 121 TMSEGETKQFSISQKAFRQLISKTQYSMAAQDVRYYLNGLLLLVEGKELR--AVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A V+I   + +   +I+PRK V E+ R+L   D  + ++L+ +++  +  S+ +  +
Sbjct: 179 LAYASVEIDTDLPRQ-EMILPRKTVLELNRLLVDTDDLLNITLTPNQVRFSFGSVVLVSK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ V+P +    ++V    L QA+ R +I+++ + + V++ L  + L +   
Sbjct: 238 LIDGKFPDYERVVPATLKNHMKVGRQTLMQAMQRAAILTNEKFRGVRVVLGDNSLKLIAA 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A+E + V Y    +D+ FN  YLL++++NI +     DE+ +  + +NSS  I 
Sbjct: 298 NAEQEEAVEEIEVDYTGDVIDVGFNVGYLLDVLNNIHA-----DEIQWSFNDANSSALIT 352

Query: 361 --GKDKDSKNNKDNKVNAFYVLMPMRI 385
             G D+             YV+MPMRI
Sbjct: 353 LPGNDRFK-----------YVVMPMRI 368


>gi|307253757|ref|ZP_07535611.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258214|ref|ZP_07539957.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306863241|gb|EFM95181.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867674|gb|EFM99519.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 212/388 (54%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI R L + + IS  F+E+       +    S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S +  ++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRASMNGVVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  +         A YV+MPMR+
Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367


>gi|322513484|ref|ZP_08066594.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322120703|gb|EFX92587.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 212/388 (54%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI R L + + IS  F+E        +    S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEE----YRALVRAARSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSLEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  +         A YV+MPMR+
Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367


>gi|307260452|ref|ZP_07542147.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869855|gb|EFN01637.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 367

 Score =  197 bits (500), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 213/388 (54%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAILE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +VD  G  T+ A    DI R L + + IS  F+E+       +    S F L + P S+
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEEDR----ALVRAARSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D  +         A YV+MPMR+
Sbjct: 349 LIEDCDNST---------AEYVIMPMRL 367


>gi|268628287|gb|ACZ13542.1| DNA polymerase III beta chain [Xenorhabdus koppenhoeferi]
          Length = 276

 Score =  196 bits (499), Expect = 3e-48,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+   
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDH 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628317|gb|ACZ13557.1| DNA polymerase III beta chain [Xenorhabdus cabanillasii]
          Length = 276

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLXIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y+   M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276


>gi|268628367|gb|ACZ13582.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           laumondii]
          Length = 276

 Score =  196 bits (499), Expect = 4e-48,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 162/270 (60%), Gaps = 8/270 (2%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122
            G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  
Sbjct: 14  AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLD 69

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLA
Sbjct: 70  DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           V  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+
Sbjct: 128 VCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T +NP
Sbjct: 187 DGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRITANNP 246

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           +  +A E ++V Y    M+I FN  Y+L++
Sbjct: 247 EQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|268628377|gb|ACZ13587.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           hainanensis]
          Length = 276

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|268628291|gb|ACZ13544.1| DNA polymerase III beta chain [Xenorhabdus miraniensis]
          Length = 276

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYRGTEMEIGFNVSYVLDV 276


>gi|268628313|gb|ACZ13555.1| DNA polymerase III beta chain [Xenorhabdus indica]
 gi|268628315|gb|ACZ13556.1| DNA polymerase III beta chain [Xenorhabdus indica]
          Length = 276

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y+   M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276


>gi|240950076|ref|ZP_04754378.1| DNA polymerase III subunit beta [Actinobacillus minor NM305]
 gi|240295451|gb|EER46206.1| DNA polymerase III subunit beta [Actinobacillus minor NM305]
          Length = 367

 Score =  196 bits (498), Expect = 5e-48,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 214/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M  T+ R  +++ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MLFTITREQLIKPLQQVCGVLSSRPTLPVIANLLLEVEGDRLLMTGTDLEVELTTEARLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
             VD     T+ A    DI R L + + IS  F+E++      +  G S F L + P S+
Sbjct: 61  QEVDFSEKFTIPAKKFLDISRSLPEDSLISMSFEEDK----AILKAGRSKFSLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +      F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATD
Sbjct: 117 YPNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++A   S+IVPRKAV E+ R++S+    V++ +  S I +++  +  
Sbjct: 175 GHRLAVCTMALTQELASH-SVIVPRKAVLELSRLVSANHDIVRLEIGSSNIRISMNGIVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L  +   L++A+ R +I+S+ + + V+LSL+ + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLNDNVLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  Y+L++++ +       + V F L  ++SS 
Sbjct: 294 TANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I    +D  NN      A YV+MPMR+
Sbjct: 349 LI----EDCDNN-----TAEYVIMPMRL 367


>gi|268628357|gb|ACZ13577.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628359|gb|ACZ13578.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628361|gb|ACZ13579.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628363|gb|ACZ13580.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628365|gb|ACZ13581.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
          Length = 276

 Score =  196 bits (498), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|268628327|gb|ACZ13562.1| DNA polymerase III beta chain [Xenorhabdus stockiae]
          Length = 276

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLIANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628379|gb|ACZ13588.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           akhurstii]
          Length = 276

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628279|gb|ACZ13538.1| DNA polymerase III beta chain [Xenorhabdus japonica]
          Length = 276

 Score =  196 bits (497), Expect = 6e-48,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAKISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMSI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y++V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRHVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628263|gb|ACZ13530.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
 gi|268628265|gb|ACZ13531.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
          Length = 276

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 164/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   +ATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++   + + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFTFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYPGTEMEIGFNVSYILDV 276


>gi|268628319|gb|ACZ13558.1| DNA polymerase III beta chain [Xenorhabdus budapestensis]
 gi|268628321|gb|ACZ13559.1| DNA polymerase III beta chain [Xenorhabdus budapestensis]
          Length = 276

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFPLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMHI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y+   M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVKYHGTEMEIGFNVSYVLDV 276


>gi|319639359|ref|ZP_07994110.1| DNA polymerase III [Neisseria mucosa C102]
 gi|317399543|gb|EFV80213.1| DNA polymerase III [Neisseria mucosa C102]
          Length = 367

 Score =  196 bits (497), Expect = 7e-48,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A    DI+R L D A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +   +   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 SVGNDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  +
Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLF-- 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      N  N  Y++MPMRI
Sbjct: 351 --------TMPNNPNFKYIVMPMRI 367


>gi|268628273|gb|ACZ13535.1| DNA polymerase III beta chain [Xenorhabdus doucetiae]
          Length = 276

 Score =  196 bits (497), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 100/268 (37%), Positives = 163/268 (60%), Gaps = 6/268 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+ TV A   +DI R L DGA+IS  ++   G  + +  G S F L + P S+FP+  + 
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSLSTLPASDFPNLDDW 71

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV 
Sbjct: 72  QSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVC 129

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
            ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+DG
Sbjct: 130 SMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDG 188

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
            FP+Y+ V+P + +K L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+ 
Sbjct: 189 RFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQ 248

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEI 332
            +A E ++V Y    M+I FN  Y+L++
Sbjct: 249 EEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|225077252|ref|ZP_03720451.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens
           NRL30031/H210]
 gi|224951396|gb|EEG32605.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens
           NRL30031/H210]
          Length = 367

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 209/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               IT +A    DI+R L D A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 NVGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  +
Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLF-- 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      N  N  Y++MPMRI
Sbjct: 351 --------TMPNNPNFKYIVMPMRI 367


>gi|268628373|gb|ACZ13585.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           luminescens]
 gi|268628375|gb|ACZ13586.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           luminescens]
          Length = 276

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 101/270 (37%), Positives = 162/270 (60%), Gaps = 8/270 (2%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122
            G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  
Sbjct: 14  AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLD 69

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLA
Sbjct: 70  DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           V  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+
Sbjct: 128 VCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T +NP
Sbjct: 187 DGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNP 246

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           +  +A E ++V Y    M+I FN  Y+L++
Sbjct: 247 EQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|261868624|ref|YP_003256546.1| DNA polymerase III subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413956|gb|ACX83327.1| DNA polymerase III, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 367

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 2   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLL 61

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    DI R L D A+I+   E +      +    S F L + P  ++P
Sbjct: 62  HAEQDGKFTIPAKKFLDICRSLPDNAEIAVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 119 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   D   ++ +  + + + + +++ + 
Sbjct: 177 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +       ++V  RL  ++SS  I
Sbjct: 296 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRMRLTDASSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S         A YV+MPMR+
Sbjct: 351 EDCEDAS---------AEYVIMPMRL 367


>gi|241759458|ref|ZP_04757562.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114]
 gi|241320240|gb|EER56573.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114]
          Length = 367

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A    DI+R L D A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +   +   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 SVGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  +
Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367


>gi|58700013|ref|ZP_00374572.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533470|gb|EAL57910.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 332

 Score =  195 bits (496), Expect = 8e-48,   Method: Compositional matrix adjust.
 Identities = 117/336 (34%), Positives = 200/336 (59%), Gaps = 5/336 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 1   MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+
Sbjct: 61  VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 119 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L+IL   +  +KV LS+ +I L      +  +
Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FPNY+ VIP S DK + +    L   +DRVS++ S +++++K SL    L +  +
Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
           + +   A ES+ V YNE P++I FN +YLL+++  I
Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCI 331


>gi|167854884|ref|ZP_02477660.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
 gi|167853951|gb|EDS25189.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
          Length = 367

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 215/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +V   G  T+ A    DI R L D + IS  F E+     V I    S F L + P S+
Sbjct: 61  EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDEDR----VFIRADRSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS  + +    F +  + L  L+E T F+MA ++ RY+LNG+ F      L+  +VATD
Sbjct: 117 YPSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E++R++   + SV++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L  +   L++A+ R +I+S+ R + V+L+L+ + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADAEVLKRALVRAAILSNERFRGVRLALNQNLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +    V     +  +D+S+S +
Sbjct: 294 TANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQRV----RISLVDASSSCL 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +D  N       A YV+MPMR+
Sbjct: 350 I-----EDCDN-----ATAEYVIMPMRL 367


>gi|261380782|ref|ZP_05985355.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703]
 gi|284796246|gb|EFC51593.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703]
          Length = 367

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 211/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               IT +A    DI+R L D A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 NVGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  +
Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367


>gi|52424541|ref|YP_087678.1| DNA polymerase III subunit beta [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306593|gb|AAU37093.1| DnaN protein [Mannheimia succiniciproducens MBEL55E]
          Length = 370

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 205/385 (53%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++      
Sbjct: 6   MQFIVSRDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTITGTDLEVELSTQAKLI 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A    DI R L D A+I    E E      +    + F L + P  E+P+
Sbjct: 66  SGTEGKFTIPAKKFLDICRSLPDEAEIHVTFEEERAI---VRSARTKFNLATLPAEEYPN 122

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F    + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGHR
Sbjct: 123 LADWQSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGHR 180

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV  + +  Q  +  S+IVPRK V E+ R+L + D+  ++ +  + + + + ++  + +
Sbjct: 181 LAVCTIAL-EQDLQNHSVIVPRKGVLELARLLEATDAPARLQIGTNNLRVQLANVVFTSK 239

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ V+P + D  L  +   L+QA  R +I+S+ R ++V+L L  +++ +T  
Sbjct: 240 LIDGRFPDYRRVLPRNADHILEADWDVLKQAFVRAAILSTERFRSVRLQLDQNQMKITAT 299

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E ++V Y+   M++ FN  Y+L++++ +         V  RL  ++SS  I 
Sbjct: 300 NPEQEEAEEIIDVSYSGNEMEVGFNVSYILDVLNALKC-----QRVRMRLTDASSSCLI- 353

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +N +D   +A YV+MPMR+
Sbjct: 354 ------ENCED--ASAEYVIMPMRL 370


>gi|229843948|ref|ZP_04464089.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1]
 gi|229812942|gb|EEP48630.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1]
          Length = 366

 Score =  195 bits (496), Expect = 9e-48,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +DN  ++ YV+MPMR+
Sbjct: 350 -------ENCEDN--SSEYVIMPMRL 366


>gi|219871633|ref|YP_002476008.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165]
 gi|219691837|gb|ACL33060.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165]
          Length = 367

 Score =  195 bits (496), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 122/388 (31%), Positives = 214/388 (55%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            +V   G  T+ A    DI R L D + IS  F E+     V I    S F L + P S+
Sbjct: 61  EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDEDR----VFIRADRSKFNLATLPASD 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS  + +    F +  + L  L+E T F+MA ++ RY+LNG+ F      L+  +VATD
Sbjct: 117 YPSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  + +  ++    S+IVPRKAV E++R++   + SV++ +  S + +++  +  
Sbjct: 175 GHRLAVCTMALNQELLTH-SVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y+ V+P + D+ L  +   L+ A+ R +I+S+ R + V+L+L+ + L +
Sbjct: 234 TSKLIDGRFPDYRRVLPRNADRILEADAEVLKHALVRAAILSNERFRGVRLALNQNLLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E ++V Y    M++ FN  YLL++++ +    V     +  +D+S+S +
Sbjct: 294 TANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQRV----RISLVDASSSCL 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +D  N       A YV+MPMR+
Sbjct: 350 I-----EDCDN-----ATAEYVIMPMRL 367


>gi|268628289|gb|ACZ13543.1| DNA polymerase III beta chain [Xenorhabdus szentirmaii]
          Length = 276

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLVANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|145640666|ref|ZP_01796249.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
 gi|145274592|gb|EDK14455.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.4-21]
          Length = 366

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366


>gi|167010109|ref|ZP_02275040.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 344

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 214/366 (58%), Gaps = 26/366 (7%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83
           K+T+P+   +L   ++  L+I AS  + EI+  I  S +    + ++A  +Y+IVR L +
Sbjct: 1   KSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNE 60

Query: 84  GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNL 140
            + I F + NE   +V I   +S F L S     +P   S   E+   SF+L+     ++
Sbjct: 61  NSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPLIDSNINEQA--SFDLSQQDFHHI 115

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-II 199
           + +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGHR+++ E  I +++    S  I
Sbjct: 116 ISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSASQSI 173

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +P+KA+ E+ +I+   + ++K+ L ++ +     + +   +LIDG +P+YQ VIP +N K
Sbjct: 174 IPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTK 233

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
            L V+    + ++ R SI+++ + + V+L++S ++L ++ +NPD  KA + + V YN+ P
Sbjct: 234 LLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQP 293

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           M+ICFNYKYLL+II N+ S+E +       LD+ N S  +          KD K N+ ++
Sbjct: 294 MEICFNYKYLLDII-NVLSEETMS----IYLDNPNMSALV----------KDEKDNSLFI 338

Query: 380 LMPMRI 385
           +MPM+I
Sbjct: 339 IMPMKI 344


>gi|268628369|gb|ACZ13583.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           caribbeanensis]
 gi|268628371|gb|ACZ13584.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           caribbeanensis]
          Length = 276

 Score =  195 bits (495), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/270 (37%), Positives = 162/270 (60%), Gaps = 8/270 (2%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122
            G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  
Sbjct: 14  AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLD 69

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLA
Sbjct: 70  DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEAEELR--TVATDGHRLA 127

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           V  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+
Sbjct: 128 VCSMGIGQKLPSH-SVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP
Sbjct: 187 DGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNP 246

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           +  +A E ++V Y    M+I FN  Y+L++
Sbjct: 247 EQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|237747156|ref|ZP_04577636.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS]
 gi|229378507|gb|EEO28598.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS]
          Length = 368

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 120/381 (31%), Positives = 211/381 (55%), Gaps = 22/381 (5%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASVDVCG 65
           R ++L  L     I+ER++T+P+  ++L++     +   ++  EI+I T A   + +   
Sbjct: 8   RDNLLRPLQIVSGIVERRHTLPILANILIRKEGNAVSFLSTDTEIQIVTHAEIGTAEEDA 67

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124
           + TV+A  L DI+R L D A+I+    ++    + +S G S F LQ+ P ++FP+  +  
Sbjct: 68  TTTVAARKLLDILRALPDSAEIAISLNDK---RLVVSAGKSRFSLQTLPAADFPTVSQPL 124

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           EY  S  L+   LKNL+   +FAMA ++IRYYLNG+        +K  AVATDGHRLA  
Sbjct: 125 EYQTSVTLSQKSLKNLLGMVYFAMAQQDIRYYLNGLLLQTGGNTIK--AVATDGHRLAFC 182

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           +++   + +    +I+PRK + E+ R+L   +  V++ +S +++      + +  +L++G
Sbjct: 183 QMETEQEFSN-NDVIIPRKTILELQRLLEESEEPVRIDISGAQVRFVFGDVELISKLVEG 241

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
           +FP+Y  VIP     +  ++   L++A+ R +IM+S + + ++  L+   L ++  N D 
Sbjct: 242 KFPDYTRVIPKGYKNKFTISRELLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
            +AIE + + Y+   +DI FN  YLL+++ N+      +DE+   L  +NSS  +   D 
Sbjct: 302 EEAIEEIELDYDGDNIDIGFNVTYLLDVLGNLK-----NDEISIELGDANSSALMSVPD- 355

Query: 365 DSKNNKDNKVNAFYVLMPMRI 385
               N D K    YV+MPMRI
Sbjct: 356 ----NTDFK----YVVMPMRI 368


>gi|268628271|gb|ACZ13534.1| DNA polymerase III beta chain [Xenorhabdus griffiniae]
          Length = 276

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL ++ + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDSDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  S LK L+E T F+MA +++RYYLNG+ F    E+L+   +ATDGHRLAV
Sbjct: 71  WQSEVEFSLPQSTLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMSI-GQDLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGAEMEIGFNVSYILDV 276


>gi|261363924|ref|ZP_05976807.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288567936|gb|EFC89496.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 367

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A    DI+R L D A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPDSAIVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  E+   +F L+    K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 SVGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++    + V L  +++       ++  +
Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367


>gi|268628281|gb|ACZ13539.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
 gi|268628283|gb|ACZ13540.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
 gi|268628285|gb|ACZ13541.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
          Length = 276

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WKSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   ++ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGENPLQLQIGSNNIRAHVNDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEILDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628301|gb|ACZ13549.1| DNA polymerase III beta chain [Xenorhabdus mauleonii]
          Length = 276

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPATDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  ++QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLVANCDMIKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628333|gb|ACZ13565.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           tasmaniensis]
          Length = 276

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 161/270 (59%), Gaps = 8/270 (2%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122
            G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  
Sbjct: 14  AGATTVPARKFFDIWRGLPDGAEISL----ELDGDRLLVRSGRSRFSLSTLPAADFPNLD 69

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLA
Sbjct: 70  DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           V  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+
Sbjct: 128 VCSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP
Sbjct: 187 DGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNP 246

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           +  +A E ++V Y    M+I FN  Y+L++
Sbjct: 247 EQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|290953774|ref|ZP_06558395.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312852|ref|ZP_06803583.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 351

 Score =  194 bits (494), Expect = 1e-47,   Method: Compositional matrix adjust.
 Identities = 121/366 (33%), Positives = 214/366 (58%), Gaps = 26/366 (7%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83
           K+T+P+   +L   ++  L+I AS  + EI+  I  S +    + ++A  +Y+IVR L +
Sbjct: 8   KSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNE 67

Query: 84  GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP---STKEEEYVYSFELASSVLKNL 140
            + I F + NE   +V I   +S F L S     +P   S   E+   SF+L+     ++
Sbjct: 68  NSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPLIDSNINEQA--SFDLSQQDFHHI 122

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-II 199
           + +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGHR+++ E  I +++    S  I
Sbjct: 123 ISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSASQSI 180

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +P+KA+ E+ +I+   + ++K+ L ++ +     + +   +LIDG +P+YQ VIP +N K
Sbjct: 181 IPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTK 240

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
            L V+    + ++ R SI+++ + + V+L++S ++L ++ +NPD  KA + + V YN+ P
Sbjct: 241 LLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQP 300

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           M+ICFNYKYLL+II N+ S+E +       LD+ N S  +          KD K N+ ++
Sbjct: 301 MEICFNYKYLLDII-NVLSEETMS----IYLDNPNMSALV----------KDEKDNSLFI 345

Query: 380 LMPMRI 385
           +MPM+I
Sbjct: 346 IMPMKI 351


>gi|255066617|ref|ZP_05318472.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256]
 gi|255049201|gb|EET44665.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256]
          Length = 367

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A    DI+R L D A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPDSAIVSLDWADNRL----TLRAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  E+   +F L+    K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 SVGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++    + V L  +++       ++  +
Sbjct: 178 LAYAASQIEAELPKT-EVILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367


>gi|268628323|gb|ACZ13560.1| DNA polymerase III beta chain [Xenorhabdus innexi]
 gi|268628325|gb|ACZ13561.1| DNA polymerase III beta chain [Xenorhabdus innexi]
          Length = 276

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ T+ A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTIPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   V+TDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVSTDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKILEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628277|gb|ACZ13537.1| DNA polymerase III beta chain [Xenorhabdus vietnamensis]
          Length = 276

 Score =  194 bits (494), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 103/269 (38%), Positives = 162/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMHI-GQNLPSHSVIVPRKGVIELMRLLDGGDNLLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|301169718|emb|CBW29319.1| DNA polymerase III, beta subunit [Haemophilus influenzae 10810]
          Length = 366

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSS---------CEYVIMPMRL 366


>gi|268628329|gb|ACZ13563.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628331|gb|ACZ13564.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           tasmaniensis]
          Length = 276

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 102/270 (37%), Positives = 161/270 (59%), Gaps = 8/270 (2%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTK 122
            G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  
Sbjct: 14  AGATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLD 69

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLA
Sbjct: 70  DWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLA 127

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           V  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+
Sbjct: 128 VCSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLV 186

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP
Sbjct: 187 DGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNP 246

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           +  +A E ++V Y    M+I FN  Y+L++
Sbjct: 247 EQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|68249577|ref|YP_248689.1| DNA polymerase III subunit beta [Haemophilus influenzae 86-028NP]
 gi|68057776|gb|AAX88029.1| DNA polymerase III, beta chain [Haemophilus influenzae 86-028NP]
          Length = 366

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKTVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|153002881|ref|YP_001377206.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. Fw109-5]
 gi|152026454|gb|ABS24222.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 376

 Score =  194 bits (493), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 125/393 (31%), Positives = 210/393 (53%), Gaps = 25/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +  +++ + LG +  I+E+K+T+P+  HVLL+A  G L + A+  ++ ++      
Sbjct: 1   MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G++ VSA  LY+IVR L +  Q++  + +     + +  G S F +   P  +F
Sbjct: 61  CEVLKEGALAVSARHLYEIVRALPE-QQVTLKRAHN--NYLEVRSGPSEFRIVGLPAEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E V   ++    L +++ERT FA++ +E RY LNG++F    E L+L  VATDG
Sbjct: 118 PALPRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRL--VATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS------SKDSSVKVSLSESRIHLNI 232
           HRL+++E  I         +I+P+K + E+ ++L       +     K+   E+      
Sbjct: 176 HRLSLSERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRR 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             + +S+RLI+G FP+Y+ VIP   +K LR+      + + RVS++SS +  AVKL L  
Sbjct: 236 PGVILSMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQ 295

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L +   NPD+G+A E + V Y   P+ I FN +YL++++  + S      EV   L  
Sbjct: 296 GTLKVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKS-----AEVQLELAD 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S   +RG D+     KD    A  V+MPMRI
Sbjct: 351 DLSPGVMRGGDE-----KDAGFTA--VVMPMRI 376


>gi|117923320|ref|YP_863937.1| DNA polymerase III subunit beta [Magnetococcus sp. MC-1]
 gi|117607076|gb|ABK42531.1| DNA polymerase III, beta subunit [Magnetococcus sp. MC-1]
          Length = 376

 Score =  194 bits (492), Expect = 2e-47,   Method: Compositional matrix adjust.
 Identities = 123/393 (31%), Positives = 201/393 (51%), Gaps = 25/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R   L+ L     ++E++NT+P   + LL+A+   L + A+  E+ +    PA 
Sbjct: 1   MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+I VSA  L++IVR+L    Q S    +E G  + ++ G + F L       FP 
Sbjct: 61  VESSGAIAVSARKLFEIVREL---PQDSLRLRSEAGERLVLTCGRARFTLVGIRADIFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCA------ 173
             E     SF L+   L  ++ +THFAM+ +E RY LNGI  H ++  D +L        
Sbjct: 118 FPETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVR 177

Query: 174 -VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+AE+ +   + +   +I+PRK V EI +++   D +V++ L E+ I ++ 
Sbjct: 178 IVATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSK 237

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             + ++ +L+ G FPNYQ VIP  N   L +    L   V R+ ++S  + + ++++LSS
Sbjct: 238 PGIVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSS 297

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D + ++  NP+   A E M   +    M + FN +YL EI+   +      D V  +L  
Sbjct: 298 DHIKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANG-----DTVRMKLRD 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S V +          + +     YVLMPMR+
Sbjct: 353 EESPVLV---------EEHSATGYLYVLMPMRV 376


>gi|268628351|gb|ACZ13574.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp.
           australis]
          Length = 276

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628267|gb|ACZ13532.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
          Length = 276

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRILVRSGRSRFSLSTLPATDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   +ATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMNI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYILDV 276


>gi|260774540|ref|ZP_05883453.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610446|gb|EEX35652.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14]
          Length = 308

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 104/322 (32%), Positives = 182/322 (56%), Gaps = 20/322 (6%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            GSITV A    DI R L D A I+   E   G  ++I  G S F L + P ++FP+ ++
Sbjct: 7   AGSITVPARKFLDICRGLPDSAVITVLLE---GDRISIRSGRSRFSLATLPANDFPNIED 63

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +      +  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  AVATDGHR+AV
Sbjct: 64  WQSDIDITVTQAELRGLIEKTQFSMANQDVRYYLNGMMFEIDASTLR--AVATDGHRMAV 121

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
           A+   V+Q      II PRK + E++++L + +  V + +  S +   +     + +L+D
Sbjct: 122 AQT-TVSQALANKQIIFPRKGILELVKLLDAPEQPVVLQIGASNLRAEVNQFVFTSKLVD 180

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + +K L   C  LRQA  R +I+S+ + + V+++L+   + +T +NP+
Sbjct: 181 GRFPDYRRVLPQNTNKTLITGCDELRQAFSRAAILSNEKFRGVRVNLAEGTMRITANNPE 240

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A E ++V +    ++I FN  Y++++++ +       D+V   +  +N+S  I   +
Sbjct: 241 QEEAEEMLDVSFTGEAIEIGFNVSYVIDVLNTLRC-----DQVRISMSDANASALIENVE 295

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            DS         A YV+MP+R+
Sbjct: 296 DDS---------AMYVVMPIRL 308


>gi|268628335|gb|ACZ13566.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           thracensis]
 gi|268628337|gb|ACZ13567.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           thracensis]
          Length = 276

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|293391840|ref|ZP_06636174.1| DNA polymerase III, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952374|gb|EFE02493.1| DNA polymerase III, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 366

 Score =  194 bits (492), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 1   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLF 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    D+ R L D A+I+   E +      +    S F L + P  ++P
Sbjct: 61  HAEHDGKFTIPAKKFLDLCRSLPDNAEITVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   D   ++ +  + + + + +++ + 
Sbjct: 176 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +       ++V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRIRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S         A YV+MPMR+
Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366


>gi|251791867|ref|YP_003006587.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533254|gb|ACS96500.1| DNA polymerase III, beta subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 366

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 1   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTKTPLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    DI R L + A+I+   E +      +    S F L + P  ++P
Sbjct: 61  HAEQDGKFTIPAKKFLDICRSLPENAEITVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   D   ++ +  + + + + +++ + 
Sbjct: 176 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +       ++V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S         A YV+MPMR+
Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366


>gi|315634816|ref|ZP_07890098.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476368|gb|EFU67118.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 366

 Score =  193 bits (491), Expect = 3e-47,   Method: Compositional matrix adjust.
 Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 1   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITGTDLEVELSTQTPLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    DI R L D A+I+   E +      +    S F L + P  ++P
Sbjct: 61  HAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEEDRAI---VRSDRSKFNLSTLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   +   ++ +  + + + + +++ + 
Sbjct: 176 RLAVCTIPL-EQDLQTHSVILPRKGVLELARLLEPSEQPARLQIGTNNLRIQLNNITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +       ++V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKC-----NQVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S         A YV+MPMR+
Sbjct: 350 EDCEDAS---------AEYVIMPMRL 366


>gi|268628339|gb|ACZ13568.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           temperata]
 gi|268628341|gb|ACZ13569.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           temperata]
 gi|268628343|gb|ACZ13570.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           temperata]
          Length = 276

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 102/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSDVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|145632378|ref|ZP_01788113.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655]
 gi|145637298|ref|ZP_01792959.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH]
 gi|144987285|gb|EDJ93815.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655]
 gi|145269550|gb|EDK09492.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH]
          Length = 366

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|86156432|ref|YP_463217.1| DNA polymerase III subunit beta [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85772943|gb|ABC79780.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 375

 Score =  193 bits (490), Expect = 4e-47,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 213/392 (54%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           M++ +   ++ + LG +  I+E+K+T+P+  HVLL+A  G  L + A+  ++ ++     
Sbjct: 1   MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VSA  LY+IVR L +  Q    K+      + +  G S F +   P  +FP
Sbjct: 61  EVLKEGAVAVSARHLYEIVRALPE--QTVTLKKAH-NNYLEVKSGPSEFRIVGLPAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    + V   ++  ++L  ++ERT FA++ +E RY LNG++F    + L+L  VATDGH
Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNIE 233
           RL+++E  + A       +I+P+K + E+ ++L+    S       K+   E+       
Sbjct: 176 RLSLSERTVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ + +RLI+G FP+Y+ VIP + +K  +V      + + R+S++SS +  AVKL LS D
Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRARFLETLRRISLLSSDKAHAVKLDLSKD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NPD+G+A E + V Y   P+ I FN +Y++E++  + S     +EVVF L   
Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKS-----NEVVFELADD 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   ++G ++      D    A  V+MPMRI
Sbjct: 351 LSPGVLKGGEE-----ADQGFTA--VVMPMRI 375


>gi|213622043|ref|ZP_03374826.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 300

 Score =  193 bits (490), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 104/304 (34%), Positives = 175/304 (57%), Gaps = 7/304 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPD 303
           +NP+
Sbjct: 295 NNPE 298


>gi|77917620|ref|YP_355435.1| DNA polymerase III subunit beta [Pelobacter carbinolicus DSM 2380]
 gi|77543703|gb|ABA87265.1| DNA polymerase III, beta subunit [Pelobacter carbinolicus DSM 2380]
          Length = 372

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 116/348 (33%), Positives = 197/348 (56%), Gaps = 13/348 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  ++E+   L+ L     I+E+KNTIP+  +VL++A D  + + A+  E+ +  + PAS
Sbjct: 1   MNFSIEKEVFLKGLARVQGIVEKKNTIPILANVLIEAEDDHIRLTATDLEVGMKASYPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G ITVSA  L++I+++L +  +ISF  KEN     + I  G S F +      EFP
Sbjct: 61  VTSAGRITVSAKKLFEIIKELPE-KEISFTAKEN---CWIEIRCGKSLFNVVGLSADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
              + +    F++   +LK L+E+T F+M+T+E +Y LNGI+    E++ +  L  VATD
Sbjct: 117 YFPQIDKEQFFQIPGDILKRLIEKTAFSMSTDESKYNLNGIYLRAMEDEGRQILRFVATD 176

Query: 178 GHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           GHRLA+ +  +    V  +AK   +I PRK V E+ +I    +  V +   ++   +   
Sbjct: 177 GHRLALMQTPLDCSHVEPLAK--GVIFPRKGVLELRKIAEEGNGEVLLGFMDNNAVIKKS 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              + +RL+DG+FP+Y  VIP +ND +  +       A+ R++I+SS + + VK+    +
Sbjct: 235 QTVIVMRLVDGDFPDYNRVIPLNNDLKANIPREEFLHALRRMAILSSEKSKGVKIDFQEN 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +L ++  NP+ G A E   + Y E  + I FN +YL++I+ N+ S++V
Sbjct: 295 QLTLSSSNPEFGDAREDFEIEYAEGDLSIGFNARYLIDILANLDSEKV 342


>gi|238021643|ref|ZP_04602069.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147]
 gi|237866257|gb|EEP67299.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147]
          Length = 367

 Score =  192 bits (489), Expect = 5e-47,   Method: Compositional matrix adjust.
 Identities = 121/385 (31%), Positives = 217/385 (56%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L  A  I+ERK+T+P+  +VLL++  G + I A+  EI+I      S  
Sbjct: 4   LQTERDALLKPLQTATGIVERKHTLPILANVLLESKGGKVHILATDLEIQIHTQGADSEQ 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               +T +A  L DI+R L + A +     E++L     +  G S F LQ+ P ++FP+ 
Sbjct: 64  GDFQLTTNAKKLQDILRALPENATVQLDLDEHKL----TLKAGKSRFNLQTLPPADFPTM 119

Query: 122 KEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E  ++ F L    LK+++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 NISETTHTQFSLPQETLKHMINQVQYSMAVQDIRYYLNGLLLQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++AK   +I+PRK V E++++L+    ++++ L ++++       ++  +
Sbjct: 178 LAYASTTIEAELAKQ-DVILPRKTVLELVKLLNQPKEAIQIELLDNQVRFQCGDTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP+Y  VIP  NDK   +N   L  A++R +I+++ + + V+L L+   L +T  
Sbjct: 237 VIDGKFPDYNRVIPLDNDKIFVINRATLLGALERSAILANEKFRGVRLQLAPGSLKITCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN ++L++++ + +SD++   ++ F    +N S  I 
Sbjct: 297 NSEQEEASEELEIAYAGESLEVGFNIQFLMDVLRSANSDDI---QIAF--GDANRSTLI- 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 351 ----TLPNNAEFK----YIVMPMRI 367


>gi|302877247|ref|YP_003845811.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans
           ES-2]
 gi|302580036|gb|ADL54047.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans
           ES-2]
          Length = 368

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 129/385 (33%), Positives = 203/385 (52%), Gaps = 26/385 (6%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-- 62
           +E+  +L+ L     I+ERK T+P+  +VL++   G +   A+  EI+IT  I    D  
Sbjct: 6   IEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADHE 65

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              +ITV    L +I+R L D +++S   KEN+      I    S F LQS P  +FP+ 
Sbjct: 66  SNAAITVGGKKLQEILRILPDQSKVSIEVKENK----AQIKSNKSKFNLQSLPAQDFPTL 121

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        L+   LK L     FAMA +++RYYLNG+ F I  ED    AVATDGHR
Sbjct: 122 SNQLADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVI--EDNIFRAVATDGHR 179

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA   + I +   K+  II+PRKA+ E+ ++LS  D  +++  S  ++      + ++ +
Sbjct: 180 LAYNAIAIESSSEKI-EIIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FP+YQ VIP   +  L +N T ++QA+ R +I+S+ + + V+  L+   LC+   
Sbjct: 239 LIEGKFPDYQRVIPNYTN-HLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISS 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A   +   Y+   +DI FN  YL+   D +SS  V  +  +F   + NSS+ I 
Sbjct: 298 NSEQEEAQVEIETDYHGEAIDIGFNVNYLM---DGLSS--VHSEMAIFSFGNPNSSILIT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D          +   YV+MPMRI
Sbjct: 353 SPD---------DLEFRYVVMPMRI 368


>gi|148826360|ref|YP_001291113.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE]
 gi|148716520|gb|ABQ98730.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE]
          Length = 366

 Score =  192 bits (489), Expect = 6e-47,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSHRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366


>gi|292490172|ref|YP_003525611.1| DNA polymerase III subunit beta [Nitrosococcus halophilus Nc4]
 gi|291578767|gb|ADE13224.1| DNA polymerase III, beta subunit [Nitrosococcus halophilus Nc4]
          Length = 367

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ER +I+  L   C ++ER++T+P+  +VLL   +  L + A+  E+EI   +   
Sbjct: 1   MQFSIEREEIVRHLATVCGVVERRHTLPILFNVLLSVEEDRLSLTATDLEVEIRTTLEVL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TVSA    DI R L   A++    ++E G + ++  G S F L + P  +FPS
Sbjct: 61  HPKGGKTTVSARKFLDICRALPARAELEV--QHEKG-QFHVHSGHSRFTLSTLPAEDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T   E V   EL  + LK L+ RT F MA +++RYYLNG+   +   +  + AVATDGHR
Sbjct: 118 TDSLEEVVELELTQAELKQLLHRTVFCMAHQDVRYYLNGL--LLELGEETVYAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAVA ++   +   +    I+PRKAV E++R+L   +  V++    +++    + LS S 
Sbjct: 176 LAVASLEKGPRREGVQIQSIIPRKAVLELVRLLEESNEPVRLKFGTNQMGAEFQGLSFST 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG+FP+Y+ VIP   +K    +    +QA+ RV+I+++ + + V+L LS+ KL  TV
Sbjct: 236 KLIDGQFPDYKRVIPVGCEKRFVADREQFKQALGRVNILTNDKYRGVRLHLSNLKLQATV 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +   A E + V Y     +I FN  YL+++++ I++     ++V     ++NSS  I
Sbjct: 296 TNLEQESAEEELEVEYQGESFEIAFNNSYLIDVLNIINT-----EQVKLEFTNANSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                        +V + YV+MPMR+
Sbjct: 351 ---------TPIGEVGSKYVVMPMRL 367


>gi|268628275|gb|ACZ13536.1| DNA polymerase III beta chain [Xenorhabdus romanii]
          Length = 276

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 99/268 (36%), Positives = 162/268 (60%), Gaps = 6/268 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+ TV A   +DI R L DGA+IS  ++   G  + +  G S F L + P S+FP+  + 
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSLSTLPASDFPNLDDW 71

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV 
Sbjct: 72  QSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVC 129

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
            + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+DG
Sbjct: 130 SMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVDG 188

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
            FP+Y+ V+P + +K L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+ 
Sbjct: 189 RFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPEQ 248

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEI 332
            +A E ++V Y    ++I FN  Y+L++
Sbjct: 249 EEAEEIVDVNYQGSEVEIGFNVSYVLDV 276


>gi|268628269|gb|ACZ13533.1| DNA polymerase III beta chain [Xenorhabdus ehlersii]
          Length = 276

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 100/269 (37%), Positives = 163/269 (60%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL ++ + +  G S F L + P S+FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDSDRILVRSGRSRFSLSTLPASDFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   ++TDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TISTDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMSI-GQDLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYILDV 276


>gi|268628345|gb|ACZ13571.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii
           NC19]
 gi|268628347|gb|ACZ13572.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           khanii]
          Length = 276

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETESEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|114778881|ref|ZP_01453678.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1]
 gi|114550850|gb|EAU53416.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1]
          Length = 366

 Score =  192 bits (488), Expect = 7e-47,   Method: Compositional matrix adjust.
 Identities = 126/386 (32%), Positives = 207/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ R+ +L+L+     I+E+++TIP+  +VL++AN   + + A+  E+ I   I  S
Sbjct: 1   MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHIDGS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++I+R+L     +S    N     ++I  G S F + + P  E+P+
Sbjct: 61  VEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGF---ISIVSGSSRFRVNTRPADEYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVATDGH 179
             E+E      L  + L +++  T FAM+T+E R YL G  F +++ ++L+L  V TDGH
Sbjct: 118 MAEQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFELDDSQNLRL--VTTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++E+ +  Q A   S IVP+KAV EI ++       V++ +SE +I L   S +++ 
Sbjct: 176 RLALSEIRL-QQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LID  FP YQ+VIP +N    R+  T   Q + R  I+++     ++L  S   L ++ 
Sbjct: 235 KLIDARFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  ++ E +   Y    + I FN +YL + +  I +       V   L    S V I
Sbjct: 295 HNSEQEESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRA-----PSVCMELKDELSPVLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           RG+D +            YV+MPMRI
Sbjct: 350 RGEDDEQSR---------YVIMPMRI 366


>gi|310817862|ref|YP_003950220.1| DNA polymerase III subunit beta [Stigmatella aurantiaca DW4/3-1]
 gi|309390934|gb|ADO68393.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 368

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 210/386 (54%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +   ++ + L  A  I+ERK T+P+  +VL+ A    + + A   +I +    PA 
Sbjct: 1   MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T++A  ++DIV+ L D AQ++  K       V+I+ G ++F +      E+P 
Sbjct: 61  VSKPGAVTLNAKYIFDIVQNLPD-AQVTLKKLAN--NYVDIASGSAHFKIVGMAAEEYPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +EE     +++ + L  ++++T FA++++E RY LNG++F   +   K+  VATDGHR
Sbjct: 118 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFE-PQSGGKVRMVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E ++         +I+PRK + E+ R+L  + D+   +  +E+        L+M +
Sbjct: 177 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG+FP YQ VIP   +K + V+     + + R++++S+ +  AV++ L  +KL +T 
Sbjct: 237 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD+G+A +++ + Y    + I FN +YL++++    +     DEV F L   +S   +
Sbjct: 297 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                      D    A  V+MPMR+
Sbjct: 352 HAPG-------DRSFTA--VVMPMRV 368


>gi|268628353|gb|ACZ13575.1| DNA polymerase III beta chain [Photorhabdus sp. Q614]
 gi|268628355|gb|ACZ13576.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp.
           asymbiotica]
          Length = 276

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628349|gb|ACZ13573.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           khanii]
          Length = 276

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 101/269 (37%), Positives = 161/269 (59%), Gaps = 8/269 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ TV A   +DI R L DGA+IS     EL G  + +  G S F L + P ++FP+  +
Sbjct: 15  GATTVPARKFFDIWRGLPDGAEISV----ELDGDRLLVRSGRSRFSLSTLPAADFPNLDD 70

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV
Sbjct: 71  WQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAV 128

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L+D
Sbjct: 129 CSMGI-GQNLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTSKLVD 187

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T +NP+
Sbjct: 188 GRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSENQLKITANNPE 247

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEI 332
             +A E ++V Y    M+I FN  Y+L++
Sbjct: 248 QEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|145630088|ref|ZP_01785870.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
 gi|144984369|gb|EDJ91792.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
          Length = 366

 Score =  192 bits (488), Expect = 8e-47,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R  +L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISREHLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|94676682|ref|YP_588601.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219832|gb|ABF13991.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 370

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 130/392 (33%), Positives = 216/392 (55%), Gaps = 29/392 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +L+ L      +  ++ +P+  H+LLQ  +  L +  +  EIEI   I  +
Sbjct: 1   MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G I V A  L+DI R L + A I+   E   GT + +  G S F L + P + FP
Sbjct: 61  KVDKIGIIMVCARKLFDICRSLPEDALINITLE---GTVMLVIAGRSRFSLMTLPATNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E    F L    LK +++ T F+MA +++RY LNG+ F I  ++L+   VATDGH
Sbjct: 118 KIADGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235
           RLA   + I   + ++P  SIIVPRK V E+LRIL     D+ VK+ +  + I + I + 
Sbjct: 176 RLAACTIYINV-LKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNY 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +  LI+G FP+Y +V+P + +K L+V    ++QA+ RV+I+S+ + + V+L L  ++L
Sbjct: 235 IFTSNLIEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQL 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T  N +  +A E ++V Y    +++ FN  Y+L+I+  +  D V    ++F  ++S+ 
Sbjct: 295 KITAKNLEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKCDTV---RLLFNNEASSV 351

Query: 356 SVFIRGKDKDSKNNKDNKVN--AFYVLMPMRI 385
            +             D+ +N  + Y++MPMR+
Sbjct: 352 QI-------------DDCMNPMSIYIVMPMRM 370


>gi|253997715|ref|YP_003049778.1| DNA polymerase III subunit beta [Methylovorus sp. SIP3-4]
 gi|253984394|gb|ACT49251.1| DNA polymerase III, beta subunit [Methylovorus sp. SIP3-4]
          Length = 367

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 117/387 (30%), Positives = 209/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+ER++T+P+  ++LL+A D  + + A+  E++I+ A+   
Sbjct: 1   MNIKINRDTLLKPLSSVTSIVERRHTLPILSNLLLEAKDEKIVLTATDLEMQISLALQTP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
           V    S T+SA  L DI R L + A+I+        + + +  G S F LQ+ P +++P 
Sbjct: 61  VGGELSTTISAKKLLDICRSLPENAEITMATAE---SRIQVKTGKSRFNLQTLPAADYPV 117

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            TK     Y+   +    LK L ++  FAMA ++IRYYLNG+ F +N    +L  V TDG
Sbjct: 118 MTKATGTTYTVVTIDQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+    ++ AQ  +   +I+PRK V E++++L   +  V + ++  +++ +   + + 
Sbjct: 176 HRLSFTSTEL-AQSYEKQELILPRKTVIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  +     V+   +  A+ R SI+S+ + + +++ L SD L + 
Sbjct: 235 SKVIDGKFPDYTRVIPVGHKNSFNVDRMTILLAMQRASILSNEKYRGIRMVLGSDSLRLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y    +DI FN  Y++++++N++      D V F    +NSS  
Sbjct: 295 STNSEQEEAEEELEIAYAGDSLDIGFNVTYMIDVLNNVNC-----DSVTFSFADANSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D ++           YV+MPMRI
Sbjct: 350 VTVADDETYK---------YVVMPMRI 367


>gi|134093296|ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans]
 gi|133737199|emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans]
          Length = 368

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 204/385 (52%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61
           +  +R  +L  L     I+ER++T+P+  ++L++ +   +   ++  E++IT  A   S 
Sbjct: 4   VKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +   S TV+A  L DI+R L D   +S    N+    + +  G S F LQ+    EFP+ 
Sbjct: 64  NEIASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTV 120

Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + E+Y     L    LK+L    HF+MA ++IRYYLNG+   ++ +++   AVATDGHR
Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNV--IAVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  +V    + A+   +I+PRK + E+ R+L   D  V + ++ S++ L    + +  +
Sbjct: 179 LAFCQVATEQEFARQ-EVIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIELISK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  V+P        +    L +++ R +IM+S + + V+  +S   + ++  
Sbjct: 238 LVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISST 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N D  +A+E + + Y    +DI FN  YLL++++N+       D +   L  +NSS  I 
Sbjct: 298 NADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DNINIALGDANSSALIT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D     N D K    YV+MPMRI
Sbjct: 353 VPD-----NPDFK----YVVMPMRI 368


>gi|197120423|ref|YP_002132374.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. K]
 gi|196170272|gb|ACG71245.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. K]
          Length = 375

 Score =  192 bits (487), Expect = 9e-47,   Method: Compositional matrix adjust.
 Identities = 122/392 (31%), Positives = 214/392 (54%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           M++ +   ++ + LG +  I+E+K+T+P+  HVLL+A  G  L + A+  ++ ++     
Sbjct: 1   MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VSA  LY+IVR L +   ++  K +     + +  G S F +   P  +FP
Sbjct: 61  EVVKEGAVAVSARHLYEIVRALPE-QSVTLKKAHN--NYLEVKSGPSEFRIVGLPAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    + V   ++  ++L  ++ERT FA++ +E RY LNG++F    + L+L  VATDGH
Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNIE 233
           RL+++E  + A       +I+P+K + E+ ++L+    S       K+   E+       
Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ + +RLI+G FP+Y+ VIP + +K  +V      + + R+S++SS +  AVKL LS D
Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NPD+G+A E + V Y   P+ I FN +Y++E++  + S     +EVVF L   
Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKS-----NEVVFELADD 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   ++G ++      D    A  V+MPMRI
Sbjct: 351 LSPGVLKGGEE-----ADQGFTA--VVMPMRI 375


>gi|118594215|ref|ZP_01551562.1| DNA polymerase III, beta subunit [Methylophilales bacterium
           HTCC2181]
 gi|118439993|gb|EAV46620.1| DNA polymerase III, beta subunit [Methylophilales bacterium
           HTCC2181]
          Length = 367

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 219/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           M I + R  +L+ L +   I+E+++ +P+  ++LL+  D   L+  A+  E++IT     
Sbjct: 1   MNIKINRDVLLKPLSNVSGIVEKRHALPILSNLLLEGQDNNSLKFTATDLEVQITLNAKT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V    SIT++A  L+DI R L +G+ I    E    ++V +  G S F LQ+ P  ++P
Sbjct: 61  EVPTDFSITIAARKLFDITRSLPEGSTIDLQVEE---SKVVLKAGKSKFNLQTLPAKDYP 117

Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             K  EE      +  + LK ++++  F+MA ++IRYYLNG+ F ++ +  KL  V TDG
Sbjct: 118 VMKLSEEEKKLIRVPQNQLKAILKQVDFSMAQQDIRYYLNGLLFEVDGK--KLNIVGTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+   +++     K  +II PRK + E++++L      V++ L++++ + + + +++ 
Sbjct: 176 HRLSFTSLELKEPQEKFQTII-PRKTILELIKLLDETAEEVEIQLTKNQAYFSFQEINLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  ++ +  ++ T L  ++ R SI+S+ + + +++ +   +L + 
Sbjct: 235 SKVIDGKFPDYHRVIPVGHENKFDIDRTQLLLSMQRASILSNEKYRGIRMVIEKSQLKLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +N +  +A E +++ Y+   +DI FN  YL++++ NI ++++      F  DSS+S + 
Sbjct: 295 SNNSEQEQAEEELDITYDGPSIDIGFNVTYLIDVLTNIQAEKL---SFAFN-DSSSSCLI 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              K+ D K          YV+MPMRI
Sbjct: 351 TIPKNDDYK----------YVVMPMRI 367


>gi|257091665|ref|YP_003165306.1| DNA polymerase III subunit beta [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044189|gb|ACV33377.1| DNA polymerase III, beta subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 376

 Score =  192 bits (487), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 126/394 (31%), Positives = 215/394 (54%), Gaps = 32/394 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I   R  +L  L     I+ER++T+P+  +VLL+    +L + A+  EI+IT     +V 
Sbjct: 4   IKTRRDTLLGPLQAVSGIVERRHTLPILSNVLLEKRGDVLTLLATDIEIQITTWSTGAVG 63

Query: 63  VC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G++TV A  L +I+R L + A +S   +++    + ++ G S F LQ+ P  +FP  
Sbjct: 64  EGDGAVTVGARKLQEILRSLPESADVSLILDDK---RLQLTAGKSRFSLQTLPADDFPCM 120

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E     F ++    ++L+ +T ++MA +++RYYLNG+   ++  +L+  AVATDGHR
Sbjct: 121 ALSEGETKKFTVSQKQFRHLLAQTQYSMAAQDVRYYLNGLLLIVDGSELR--AVATDGHR 178

Query: 181 LAVAE--VDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           LA +   +D  AQ  + P      +IVPRK V E+ R+L+  D  + + +  ++I     
Sbjct: 179 LAYSSMPLDDAAQAPREPGAARQELIVPRKTVLELSRLLTDTDEPLSIEMLATQIRFQFG 238

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            +S+  +LIDG FP+Y+ VIP +    + V+   L Q++ R +I+++ + + V+L LS+ 
Sbjct: 239 HVSLVSKLIDGRFPDYERVIPATLRNVVSVSRGLLLQSMIRAAILTNEKFRGVRLILSAG 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   N +  +A E + V YN  P+D+ FN  YLL++++N      VDD + +  + +
Sbjct: 299 SLKIMAANAEQEEAQEEIEVEYNGEPLDVGFNVAYLLDVLNN-----TVDDTIEWGFNDA 353

Query: 354 NSSVF--IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           NSS    I G D+             YV+MPMRI
Sbjct: 354 NSSALLTIPGNDRFK-----------YVVMPMRI 376


>gi|297537199|ref|YP_003672968.1| DNA polymerase III subunit beta [Methylotenera sp. 301]
 gi|297256546|gb|ADI28391.1| DNA polymerase III, beta subunit [Methylotenera sp. 301]
          Length = 366

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+E+++T+P+  ++LL+A    + + A+  E++I+ +I ++
Sbjct: 1   MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSIESA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
                S T+SA  L DI R L D ++I+    +   + + +  G S F LQ+ P +++P 
Sbjct: 61  TTGDFSTTISAKKLLDICRSLPDSSEINMATND---SRITLKAGKSRFNLQTLPAADYPV 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            TK +       +    LK+L+++  FAMA ++IRYYLNG+ F +     +L  V TDGH
Sbjct: 118 MTKTQGESTLVTIGQRQLKDLLKQVEFAMAQQDIRYYLNGLLFEVVAN--RLNIVGTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+    ++     K   +I+PRK V E++++L   D  V++ L+ ++++ +     +  
Sbjct: 176 RLSFTSTELKQNYDKQ-DVILPRKTVIELIKLLDDSDEDVQIELASNQVNFSFSHFKLIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG+FP+Y  VIP  +      +   +  A+ R SI+S+ + + +++ LS++ L +  
Sbjct: 235 KVIDGKFPDYNRVIPTGHQNSFTTDRVGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  +A E + + Y    +DI FN  YL+++++N SS     ++  F    +NSS  I
Sbjct: 295 TNSDQEEAEEELEIDYAGDSLDIGFNVTYLIDVLNNTSS-----EQATFSFADANSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   NN D K    YV+MPMRI
Sbjct: 350 T-----VPNNTDYK----YVVMPMRI 366


>gi|220915125|ref|YP_002490429.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219952979|gb|ACL63363.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 375

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 123/392 (31%), Positives = 212/392 (54%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           M++ +   ++ + LG +  I+E+K+T+P+  HVLL+A  G  L + A+  ++ ++     
Sbjct: 1   MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VSA  LY+IVR L +  Q    K+      + +  G S F +   P  +FP
Sbjct: 61  EVLKEGAVAVSARHLYEIVRALPE--QTVTLKKAH-NNYLEVKSGPSEFRIVGLPAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    + V    +  ++L  ++ERT FA++ +E RY LNG++F    + L+L  VATDGH
Sbjct: 118 ALPRFDKVPFAPVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNIE 233
           RL+++E  + A       +I+P+K + E+ ++L+    S       K+   E+       
Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEQPEAKLGFVENSAIFRRP 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ + +RLI+G FP+Y+ VIP + +K  +V      + + R+S++SS +  AVKL LS D
Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NPD+G+A E + V Y   P+ I FN +Y++E++  + S     +EVVF L   
Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKS-----NEVVFELADD 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   ++G ++      D    A  V+MPMRI
Sbjct: 351 LSPGVLKGGEE-----ADQGFTA--VVMPMRI 375


>gi|254483315|ref|ZP_05096546.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214036410|gb|EEB77086.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 326

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 195/345 (56%), Gaps = 20/345 (5%)

Query: 42  LEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100
           L +  +  E+E+ G +  AS    G +T+ A  L DI + L +G++ISF  E+   ++V 
Sbjct: 1   LSLTGTDLEVELVGRVKLASAGDSGELTLPARKLVDICKSLPEGSEISFAAED---SKVT 57

Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160
           +  G S F L + P  EFP+ ++    + F +    LK L++RT FAMA +++RYYLNG+
Sbjct: 58  VKSGRSRFTLSTLPAREFPNVEDSMGTHQFTIKQGQLKRLIDRTGFAMAQQDVRYYLNGM 117

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
            + + ++ LK+  VATDGHRLA+  +    +      +I+PRK V E+ R+L ++D  + 
Sbjct: 118 LWELKDKQLKV--VATDGHRLALCTLPEKIEAGDDAQVILPRKGVLELARLLLAEDEDIA 175

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + +  + I    E  + + +L+DG+FP+YQ V+P S +K +  +   LRQA  R +I+S+
Sbjct: 176 IVIGSNHIRATTEEFTFTSKLVDGKFPDYQRVLPRSPNKIVLGSRLELRQAFTRTAILSN 235

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            + + V+L L+ + L +  +NP+  +A E++ V Y    +++ FN  YLL+++  +S   
Sbjct: 236 EKYRGVRLKLTDNSLDIVANNPEQEEAEEAVPVDYQGESLEVGFNVSYLLDVLAVLSG-- 293

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +++   L   NSS  +   D+          ++ YV+MPMR+
Sbjct: 294 ---EQIKLSLSDPNSSALLEESDEG---------DSLYVVMPMRL 326


>gi|115378321|ref|ZP_01465487.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115364675|gb|EAU63744.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 444

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 210/386 (54%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +   ++ + L  A  I+ERK T+P+  +VL+ A    + + A   +I +    PA 
Sbjct: 77  MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 136

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T++A  ++DIV+ L D AQ++  K       V+I+ G ++F +      E+P 
Sbjct: 137 VSKPGAVTLNAKYIFDIVQNLPD-AQVTLKKLAN--NYVDIASGSAHFKIVGMAAEEYPK 193

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +EE     +++ + L  ++++T FA++++E RY LNG++F   +   K+  VATDGHR
Sbjct: 194 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFE-PQSGGKVRMVATDGHR 252

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E ++         +I+PRK + E+ R+L  + D+   +  +E+        L+M +
Sbjct: 253 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 312

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG+FP YQ VIP   +K + V+     + + R++++S+ +  AV++ L  +KL +T 
Sbjct: 313 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 372

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD+G+A +++ + Y    + I FN +YL++++    +     DEV F L   +S   +
Sbjct: 373 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 427

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                      D    A  V+MPMR+
Sbjct: 428 HAPG-------DRSFTA--VVMPMRV 444


>gi|57239515|ref|YP_180651.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579497|ref|YP_197709.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161594|emb|CAH58522.1| DNA polymerase III, beta subunit [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418123|emb|CAI27327.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 375

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/390 (32%), Positives = 212/390 (54%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +   V +  +L+ L +   I+E++++I V   V ++A D  + + ++  +I I  +I A+
Sbjct: 7   LNFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISAN 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESEF 118
           V V G I VSA LLYDIVRKL +  +I F   K+  L  E +     + F L      +F
Sbjct: 67  VLVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKDGRLTIECS----RTEFSLPIVDIEKF 122

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +  E    F L  S L NL  +T FA++ EE R+ LNG++ H +     LC  ATDG
Sbjct: 123 PVIEHNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTSNG--ALCCAATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNIESLS 236
           HRL++A++  V  I     IIVP+K V EIL+I+S  +SS  + +SLS  +I    +   
Sbjct: 181 HRLSLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYI 240

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  ++IDG FP+Y ++IP S+DK + ++   L  A+DRVS++   +++ +KL  + +KL 
Sbjct: 241 LISKVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLI 300

Query: 297 MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++  + D G A E + +  Y+   + I  N +YL+E +        +  +       +N+
Sbjct: 301 LSAASSDQGDAREELEIDTYSTSEITIGLNARYLMEAL------YCIKGKCHLSFYDANT 354

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ I+ +D D         +A Y++MPMRI
Sbjct: 355 AILIQEQDND---------DAMYIIMPMRI 375


>gi|309973508|gb|ADO96709.1| DNA polymerase III beta subunit [Haemophilus influenzae R2846]
          Length = 366

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366


>gi|58617550|ref|YP_196749.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel]
 gi|58417162|emb|CAI28275.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel]
          Length = 375

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 127/390 (32%), Positives = 212/390 (54%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +   V +  +L+ L +   I+E++++I V   V ++A D  + + ++  +I I  +I A+
Sbjct: 7   LNFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISAN 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESEF 118
           V V G I VSA LLYDIVRKL +  +I F   K+  L  E +     + F L      +F
Sbjct: 67  VLVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKDGRLTIECS----RTEFSLPIVDIEKF 122

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +  E    F L  S L NL  +T FA++ EE R+ LNG++ H +     LC  ATDG
Sbjct: 123 PVIENNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTSNG--ALCCAATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNIESLS 236
           HRL++A++  V  I     IIVP+K V EIL+I+S  +SS  + +SLS  +I    +   
Sbjct: 181 HRLSLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYI 240

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  ++IDG FP+Y ++IP S+DK + ++   L  A+DRVS++   +++ +KL  + +KL 
Sbjct: 241 LISKVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLI 300

Query: 297 MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++  + D G A E + +  Y+   + I  N +YL+E +        +  +       +N+
Sbjct: 301 LSAASSDQGDAREELEIDTYSTSEITIGLNARYLMEAL------YCIKGKCHLSFYDANT 354

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ I+ +D D         +A Y++MPMRI
Sbjct: 355 AILIQEQDND---------DAMYIIMPMRI 375


>gi|300309348|ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1]
 gi|300072133|gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae
           SmR1]
          Length = 368

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/385 (30%), Positives = 203/385 (52%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61
           +  +R  +L  L     I+ER++T+P+  ++L++ +   +   ++  E++IT  A   S 
Sbjct: 4   VKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADVGSG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV+A  L DI+R L D  ++S    N+    + +  G S F LQ+    EFP+ 
Sbjct: 64  SEATATTVAARKLLDILRALPDSGEVSISLSNK---RLTVQSGKSRFALQTLAAEEFPTV 120

Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + E Y     L    LK+L    HFAMA ++IRYYLNG+   +  E   + AVATDGHR
Sbjct: 121 AQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVV--EGKNVIAVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  +V+      +   +I+PRK + E+ R+L   D  V++ ++ +++ L    + +  +
Sbjct: 179 LAFCQVETEEDFPRQ-EVIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIELISK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  V+P        ++   L +++ R +IM+S + + V+  ++   L ++  
Sbjct: 238 LVEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKISST 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N D  +A+E + + Y    +DI FN  YLL++++N+      +D V   L  +NSS  I 
Sbjct: 298 NADQEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLK-----NDYVNIALGDANSSALIT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D     N D K    YV+MPMRI
Sbjct: 353 IPD-----NADFK----YVVMPMRI 368


>gi|42521652|ref|NP_967032.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100]
 gi|39574182|emb|CAE77686.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100]
          Length = 368

 Score =  191 bits (486), Expect = 1e-46,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 219/391 (56%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +++ D+L L+G    I+E++NT+P+  +VLL+A+   L++ A+  E+ +T  I   
Sbjct: 1   MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIKVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE--- 117
           V   G + VSA  L+DI ++L +G      KEN     + I  G     +      E   
Sbjct: 61  VHQAGKVAVSAKSLFDIAKELSEGPITLIKKENNW---LEIKQGKYTSKIVGISAEEYPI 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+   + ++   ++ + VLK ++++T ++++T+E RY+LNG+FF +N +      VATD
Sbjct: 118 FPTYNSQAFI---KIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQT-GFKMVATD 173

Query: 178 GHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHR+++      DI  ++     +I+PRK + EI +IL S D +V++++  S+  L   S
Sbjct: 174 GHRMSLVNKPSEDI--KVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKHSS 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             + +RLI+G++PNYQ  IP    +++ ++      ++ RVS++++ + +AV L+LS+ +
Sbjct: 232 TILMIRLIEGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGR 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++ +NP++G A E + V Y    + I FN KY+ +I+ +++      D++ F L+   
Sbjct: 292 MEISSNNPELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQ-----DKIDFELNDHL 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   +R           N      V+MPMRI
Sbjct: 347 SPGLMR---------PHNDQTYTCVVMPMRI 368


>gi|95929987|ref|ZP_01312727.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133956|gb|EAT15615.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 372

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 116/389 (29%), Positives = 215/389 (55%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MKIT +++D+L+ L     ++E+K T+P+  +VLL+ +     L + A+  EI I   I 
Sbjct: 1   MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   G IT+SA  LY+IV++L D       KEN     V I +G + F +      EF
Sbjct: 61  AEIISDGKITISAKKLYEIVKELADAEITLKVKENNW---VEIINGKAKFNIVGLSSEEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176
           P   +++   +  +    LKN++++T +A++ +E ++ LNGI+ H    D K  +  V+T
Sbjct: 118 PLITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVST 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRL++ +++   +I     +I P+K + E+ +I+  ++  +K+S+ ++   +NI+  +
Sbjct: 178 DGHRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETT 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDG+FP+Y+ VIP  +D   ++N   L   + R+S++++ + + + +    +++ 
Sbjct: 238 LVMRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEIN 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  NP+ G A E++   Y    + I FN KYL+++I N     VVD ++   +  + S 
Sbjct: 298 VTSSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISN-----VVDKDIRIYIKDNMSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I  +D +         N   V+MPMRI
Sbjct: 353 CLILPEDTN---------NYLAVIMPMRI 372


>gi|329118145|ref|ZP_08246857.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465805|gb|EGF12078.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 367

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 123/385 (31%), Positives = 207/385 (53%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VL++   G   I A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLIENTHGQTNILATDLEIQINTAGPDSEA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A  L DI+R L +GA ++  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKLQDILRALPEGALVALDWAQNRL----TLKAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  EE   +F L    LK ++ +  ++MA ++IRYYLNG+        L+L  VATDGHR
Sbjct: 120 SVGEEIGSAFSLPQDTLKTMLAQVQYSMAVQDIRYYLNGLLMQTEGGQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   I A + K   +I+PRK V E+ ++L+  D  V V L E+++        +  +
Sbjct: 178 LAYSAAAIEADLPKA-EVILPRKTVLELFKLLNRPDEQVSVELLENQVRFRCNGSVIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG+FP+Y  VIP  NDK   +N      A++R +I+++ + +  +L L    L +   
Sbjct: 237 VVDGKFPDYNRVIPLDNDKIFLLNRAAFLGALERAAILANEKFRGARLHLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    ++  FN  YL++++ NI +D++   ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEAGFNINYLMDVLRNIHADDI---QLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN D K    Y++MPMRI
Sbjct: 352 -----IPNNPDFK----YIVMPMRI 367


>gi|309751342|gb|ADO81326.1| DNA polymerase III beta subunit [Haemophilus influenzae R2866]
          Length = 366

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSS---------CEYVIMPMRL 366


>gi|319897496|ref|YP_004135693.1| DNA polymerase iii, beta subunit [Haemophilus influenzae F3031]
 gi|317433002|emb|CBY81373.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3031]
          Length = 366

 Score =  191 bits (485), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 121/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDESEITVIFEQDRAL---VQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISL-GQELQNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|217968467|ref|YP_002353701.1| DNA polymerase III subunit beta [Thauera sp. MZ1T]
 gi|217505794|gb|ACK52805.1| DNA polymerase III, beta subunit [Thauera sp. MZ1T]
          Length = 369

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 124/389 (31%), Positives = 206/389 (52%), Gaps = 29/389 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAIPA 59
           +T  R  +L  L     I+E+++T+P+  +VL++ +   L + A+  EI+I   TG    
Sbjct: 4   LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHADQLTMLATDIEIQIRTTTGGHIG 63

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D   SITV A  L DI+R L D A+IS   +++    + +  G S F LQ+ P +++P
Sbjct: 64  GED--ASITVGARKLQDILRALPDSAEISLTLDDK---RLTVKAGRSRFQLQTLPAADYP 118

Query: 120 S-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                 +      +     K  + +  +AMA ++IRYYLNG+    +  +L++  VATDG
Sbjct: 119 RLNPPTDAAAHLSIGQRTFKRQLAQVAYAMAQQDIRYYLNGLLLIADGGELRM--VATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A  D+ A IA     I+PRK V E+ R L+  D  +++ L+ ++       + + 
Sbjct: 177 HRLAYAASDLEAPIATRTEAILPRKTVLELARQLADSDDPLEILLAGNQAVFRFGPIELV 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG+FP+Y+ VIP ++ K +      L  A+ R +I+++ + + V++ L    L + 
Sbjct: 237 TKLIDGKFPDYERVIPTAHPKLIHFARQPLLSALQRAAILTNEKFRGVRMVLEDGVLRIA 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A++ + + Y    +DI FN  YLL++++N+SS E VD    +R +  NSS  
Sbjct: 297 STNAEQEEAMDELEIDYQGDKLDIGFNVTYLLDVLNNLSS-ETVD----WRFNDGNSSAL 351

Query: 359 IR--GKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   G DK             YV+MPMRI
Sbjct: 352 ITLPGNDKFK-----------YVVMPMRI 369


>gi|145638186|ref|ZP_01793796.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII]
 gi|145272515|gb|EDK12422.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII]
          Length = 366

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|319775074|ref|YP_004137562.1| DNA polymerase III subunit beta [Haemophilus influenzae F3047]
 gi|329123015|ref|ZP_08251586.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|317449665|emb|CBY85871.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3047]
 gi|327471946|gb|EGF17386.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 366

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSS---------CEYVIMPMRL 366


>gi|91774358|ref|YP_544114.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT]
 gi|91708345|gb|ABE48273.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT]
          Length = 367

 Score =  191 bits (484), Expect = 2e-46,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 212/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+ER++T+P+  ++LL+A    +++ A+  E++I+ ++ ++
Sbjct: 1   MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
                S T+SA  L DI R L + A+I+   ++   + + +  G S F LQ+ P  ++P 
Sbjct: 61  AGGELSTTISAKKLLDICRSLPENAEITMATQD---SRIQVKTGKSRFNLQTLPAGDYPL 117

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            TK E+   +  ++    LK L ++  FAMA ++IRYYLNG+ F +N    +L  V TDG
Sbjct: 118 MTKTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+    ++ +   K   II+PRK V E++++L   +  V + L+  + +     + + 
Sbjct: 176 HRLSFTSTELASSYEKQ-EIILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  +     V+ T +  ++ R SI+S+ + + +++ LS++ L + 
Sbjct: 235 SKVIDGKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y    +DI FN  Y++++++N  S     + V F    +NSS  
Sbjct: 295 STNSEQEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDS-----ESVTFSFADANSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  ++ D         N  YV+MPMRI
Sbjct: 350 VTVENDD---------NYKYVVMPMRI 367


>gi|294668098|ref|ZP_06733205.1| DNA polymerase III, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309806|gb|EFE51049.1| DNA polymerase III, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 367

 Score =  190 bits (483), Expect = 3e-46,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 209/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++  G   I A+  EI+I    P S  
Sbjct: 4   LQADRDALLKPLQAVTGIVERRHTLPILSNVLLESTHGQTNILATDLEIQINTDGPKSEA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A  L DI+R L +GAQ++  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKLQDILRALPEGAQVALDWAQNRL----TLKAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  EE   +F L    LK ++ +  ++MA ++IRYYLNG+      + L+L  VATDGHR
Sbjct: 120 SVGEEVSSAFSLTQEALKGMLSQVQYSMAVQDIRYYLNGLLMQTEGDQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   I A + K   +I+PRK V E+ ++L+  +  V V L  +++        +  +
Sbjct: 178 LAYSAATIEADLPKA-EVILPRKTVLELFKLLNQPNEQVSVELLNNQVRFRCNGTVIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG+FP++  VIP  NDK   +N ++L  A++R +I+++ + +  +L L    L +   
Sbjct: 237 VVDGKFPDFNRVIPLDNDKIFLLNRSHLLGALERAAILANEKFRGARLHLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ N+ ++   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGGELEVGFNINYLMDVLRNVHAE---DMQLAFG-DANRSTLF-- 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      N  N  Y++MPMRI
Sbjct: 351 --------TIPNNPNFKYIVMPMRI 367


>gi|298369734|ref|ZP_06981051.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282291|gb|EFI23779.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 367

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 212/385 (55%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++++G   I A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESSNGQTNILATDLEIQINTAGPESQT 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A    DI+R L + A +S  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPESAIVSLDWADNRL----TLKAGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +   +   +F L     KN++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 SVGHDVSTAFSLTQETFKNMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A++ K   +I+PRK V E+ ++L++    + V L ++++       ++  +
Sbjct: 178 LAYATSQIEAELPKT-EVILPRKTVLELFKLLNNPSEQITVELLDNQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   V+ T+   A++R +I+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFLVSRTDFLGALERAAILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ N+ +D   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREELEIAYQGSELEVGFNIGYLMDVLRNVHAD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----IPNNPNFK----YIVMPMRI 367


>gi|300702376|ref|YP_003743976.1| DNA polymerase III subunit beta [Ralstonia solanacearum CFBP2957]
 gi|299070037|emb|CBJ41322.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CFBP2957]
          Length = 371

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 122/393 (31%), Positives = 210/393 (53%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT       D
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59

Query: 63  VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG+       TV+A  L DI+R + DG ++S    ++    +++  G S F LQ+    
Sbjct: 60  -CGAGNGDIATTVAARKLVDILRAMPDG-EVSLTLNDK---RMSVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVA
Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++    
Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++ T L+QA+ R +I+++ + + V+  L +
Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  
Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   D D+           YV+MPMRI
Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371


>gi|294338442|emb|CAZ86768.1| DNA polymerase III, beta subunit [Thiomonas sp. 3As]
          Length = 371

 Score =  190 bits (482), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 126/392 (32%), Positives = 216/392 (55%), Gaps = 31/392 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEI----TGA 56
           ++T  R ++L+LLG    I+ER+ T+P+  +VL+Q N +G L I  S  E++I     GA
Sbjct: 3   RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFI-TSDMEVQIRLQAGGA 61

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +  S +   +ITV+   L DI+R    G     + + ++     +    S F LQ+ P  
Sbjct: 62  VQTSAE-DAAITVNMRKLLDILRAASPGNVTLEWSDGKM----TVRAAKSRFSLQTLPAE 116

Query: 117 EFPSTKEEEYV--YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +FP  +       ++  L   +LK L+  THFAMA  +IRYYLNG+ +  + + + L  V
Sbjct: 117 DFPLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--V 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIE 233
           ATDGHR+ +A   +   + +   II+PRK V E+ R+LS +D + + ++L+ ++  L ++
Sbjct: 175 ATDGHRMTLATAPLEKAVERR-EIILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLD 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            L  + +LI+G+FP+YQ V+P  +   L+V  T L+ A+ RV+I+++ + + V+++L   
Sbjct: 234 GLEFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPG 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +T  N +  +A E ++V Y    ++I FN  YL++ + N++S     D++   L   
Sbjct: 294 LLRLTSINAEQEEAQEEIDVDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDG 348

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           NSS      D+          N  YV+MPMRI
Sbjct: 349 NSSALFTMPDEP---------NFKYVVMPMRI 371


>gi|294648701|ref|ZP_06726161.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825376|gb|EFF84119.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC
           19194]
          Length = 382

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 116/402 (28%), Positives = 209/402 (51%), Gaps = 37/402 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  ++ +L H    +ER++T+ +  +V +Q     L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACLEPGETTVPARKLVEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I++  L+   V 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TDGHRLA+ EV + +  A  P   IVPRKAVGE+ R+LS +D  + + +    +++ I +
Sbjct: 176 TDGHRLALCEV-LASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINT 234

Query: 235 LS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ ++
Sbjct: 235 PSRDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKL 294

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           + V L+ + D L +  +NP+  +A+E + + Y + P+++ FN +Y+L+++  +       
Sbjct: 295 RGVFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG----- 349

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D+V   +  +N SV ++      +          YV+MPMR+
Sbjct: 350 DDVRMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|16272930|ref|NP_439155.1| DNA polymerase III subunit beta [Haemophilus influenzae Rd KW20]
 gi|260580083|ref|ZP_05847913.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW]
 gi|1169393|sp|P43744|DPO3B_HAEIN RecName: Full=DNA polymerase III subunit beta
 gi|1574022|gb|AAC22654.1| DNA polymerase III, beta subunit (dnaN) [Haemophilus influenzae Rd
           KW20]
 gi|260093367|gb|EEW77300.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW]
          Length = 366

 Score =  189 bits (481), Expect = 4e-46,   Method: Compositional matrix adjust.
 Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|239998134|ref|ZP_04718058.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
 gi|240013315|ref|ZP_04720228.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI18]
 gi|240015760|ref|ZP_04722300.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA6140]
 gi|240079897|ref|ZP_04724440.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
 gi|240112105|ref|ZP_04726595.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
 gi|240114851|ref|ZP_04728913.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
 gi|240117053|ref|ZP_04731115.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
 gi|240120387|ref|ZP_04733349.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID24-1]
 gi|240122691|ref|ZP_04735647.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
 gi|240124879|ref|ZP_04737765.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
 gi|240127392|ref|ZP_04740053.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
 gi|254492914|ref|ZP_05106085.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291]
 gi|260441334|ref|ZP_05795150.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
 gi|268593986|ref|ZP_06128153.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
 gi|268596040|ref|ZP_06130207.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
 gi|268598164|ref|ZP_06132331.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
 gi|268600508|ref|ZP_06134675.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
 gi|268602741|ref|ZP_06136908.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
 gi|268681290|ref|ZP_06148152.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
 gi|268683461|ref|ZP_06150323.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
 gi|268685767|ref|ZP_06152629.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291044692|ref|ZP_06570401.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
 gi|293397794|ref|ZP_06642000.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62]
 gi|226511954|gb|EEH61299.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291]
 gi|268547375|gb|EEZ42793.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
 gi|268549828|gb|EEZ44847.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
 gi|268582295|gb|EEZ46971.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
 gi|268584639|gb|EEZ49315.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
 gi|268586872|gb|EEZ51548.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
 gi|268621574|gb|EEZ53974.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
 gi|268623745|gb|EEZ56145.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
 gi|268626051|gb|EEZ58451.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291011586|gb|EFE03582.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
 gi|291611740|gb|EFF40809.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62]
 gi|317165577|gb|ADV09118.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 367

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 209/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               IT +A    DI+R L  GA +S  + +N L     +  G S F LQ+ P ++FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPAADFPMM 119

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 NVGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  +
Sbjct: 178 LAYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367


>gi|73539708|ref|YP_294228.1| DNA polymerase III subunit beta [Ralstonia eutropha JMP134]
 gi|72117121|gb|AAZ59384.1| DNA polymerase III, beta subunit [Ralstonia eutropha JMP134]
          Length = 371

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT        
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59

Query: 63  VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG      + TV+A  L DI+R + DG       +  +     +  G S F LQ+    
Sbjct: 60  -CGVGNDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   ++ +  K+ AVA
Sbjct: 115 EFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVA 172

Query: 176 TDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V++      +     +I+PRK + E+ R+L   D  V+V L+ +++  + 
Sbjct: 173 TDGHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFSF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ S     ++V   L  
Sbjct: 293 HMLKISSTNADQEEAQEELEIDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   + D         N  YV+MPMRI
Sbjct: 348 SNSSALITVPEDD---------NFKYVVMPMRI 371


>gi|121634190|ref|YP_974435.1| DNA polymerase III subunit beta [Neisseria meningitidis FAM18]
 gi|218767524|ref|YP_002342036.1| DNA polymerase III subunit beta [Neisseria meningitidis Z2491]
 gi|304388448|ref|ZP_07370554.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|120865896|emb|CAM09632.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
           FAM18]
 gi|121051532|emb|CAM07829.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
           Z2491]
 gi|254671989|emb|CBA04456.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha275]
 gi|304337565|gb|EFM03728.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|319409788|emb|CBY90096.1| DNA polymerase III beta subunit [Neisseria meningitidis WUE 2594]
 gi|325131540|gb|EGC54247.1| DNA polymerase III, beta subunit [Neisseria meningitidis M6190]
 gi|325135493|gb|EGC58111.1| DNA polymerase III, beta subunit [Neisseria meningitidis M0579]
 gi|325139205|gb|EGC61751.1| DNA polymerase III, beta subunit [Neisseria meningitidis ES14902]
 gi|325141558|gb|EGC64025.1| DNA polymerase III, beta subunit [Neisseria meningitidis 961-5945]
 gi|325197602|gb|ADY93058.1| DNA polymerase III, beta subunit [Neisseria meningitidis G2136]
 gi|325201463|gb|ADY96917.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M01-240149]
 gi|325207444|gb|ADZ02896.1| DNA polymerase III, beta subunit [Neisseria meningitidis NZ-05/33]
          Length = 367

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 210/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L S  L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|289207189|ref|YP_003459255.1| DNA polymerase III subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288942820|gb|ADC70519.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. K90mix]
          Length = 367

 Score =  189 bits (481), Expect = 5e-46,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 207/393 (52%), Gaps = 34/393 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GL------LEIKASGPEIE 52
           M+++ +R  + + L       E++ T+P+  +V L+ ++  G+      LE+   G   E
Sbjct: 1   MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQG---E 57

Query: 53  ITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
             G IP   DV    TVS   L D+V+   + ++I    + E    +++    S F L +
Sbjct: 58  AAGTIPGECDV----TVSVRKLLDVVKAAPEDSEIRATIDGE---RMSVGFAGSRFSLAT 110

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P ++FP  + +   ++ ++  + L+ L+E T F+MA +++RYYL G+    +   L+  
Sbjct: 111 LPGADFPDWESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLR-- 168

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATDGHRLA+AE ++   I      IVPRK + E+ R LS  D  V+V  SE ++  ++
Sbjct: 169 AVATDGHRLALAEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDL 228

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +  +  ++I+G FP+Y+ VIP      L V    L+QA+ RVSI++S + + V+++L  
Sbjct: 229 GNAVLRSKVIEGRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGD 288

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +   +   N D  +A ES+   Y   PM+I FN  YL+++++ I +     D+V   L  
Sbjct: 289 EGCQVMTHNADREEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIET-----DQVRIGLRD 343

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            NSS+ ++ +             A YV+MPMR+
Sbjct: 344 GNSSILVQAEPPG---------GARYVVMPMRL 367


>gi|148828163|ref|YP_001292916.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG]
 gi|148719405|gb|ABR00533.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG]
          Length = 366

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|83749734|ref|ZP_00946711.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551]
 gi|207727477|ref|YP_002255871.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           MolK2]
 gi|207741916|ref|YP_002258308.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723586|gb|EAP70787.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551]
 gi|206590714|emb|CAQ56326.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           MolK2]
 gi|206593302|emb|CAQ60229.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 371

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 206/393 (52%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT       D
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59

Query: 63  VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG+       TV+A  L DI+R + DG       +  +    ++  G S F LQ+    
Sbjct: 60  -CGAGNGDIATTVAARKLVDILRAMPDGEVTLTLNDKRM----SVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVA
Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++    
Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++ T L+QA+ R +I+++ + + V+  L +
Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  
Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   D D+           YV+MPMRI
Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371


>gi|226952831|ref|ZP_03823295.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244]
 gi|226836452|gb|EEH68835.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244]
          Length = 382

 Score =  189 bits (480), Expect = 6e-46,   Method: Compositional matrix adjust.
 Identities = 115/402 (28%), Positives = 209/402 (51%), Gaps = 37/402 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  ++ +L H    +ER++T+ +  +V +Q     L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A +     E++      +  G+S F L + P  
Sbjct: 61  EGACLEPGETTVPARKLVEICKSLPTAALVDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  T E       ++    LK L E+T FAMA +++R+YL G    I++  L+   V 
Sbjct: 118 DYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TDGHRLA+ EV + +  A  P   IVPRKAVGE+ R+LS +D  + + +    +++ I +
Sbjct: 176 TDGHRLALCEV-LASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINT 234

Query: 235 LS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ ++
Sbjct: 235 PSRDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKL 294

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           + V L+ + D L +  +NP+  +A+E + + Y + P+++ FN +Y+L+++  +       
Sbjct: 295 RGVFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG----- 349

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D+V   +  +N SV ++      +          YV+MPMR+
Sbjct: 350 DDVRMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|229846050|ref|ZP_04466162.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1]
 gi|229811054|gb|EEP46771.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1]
          Length = 366

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|145634168|ref|ZP_01789879.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA]
 gi|145268612|gb|EDK08605.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA]
          Length = 366

 Score =  189 bits (480), Expect = 7e-46,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LS   ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSFKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|152980594|ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille]
 gi|151280671|gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille]
          Length = 368

 Score =  189 bits (479), Expect = 8e-46,   Method: Compositional matrix adjust.
 Identities = 116/385 (30%), Positives = 203/385 (52%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61
           +  +R  +L  L     I+ER++T+P+  ++L++ +   +   ++  E++IT  A   S 
Sbjct: 4   VKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQVGSG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +   S TV+A  L DI+R L D   +S    N+    + +  G S F LQ+    EFP+ 
Sbjct: 64  NDVASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTV 120

Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + E+Y     L    LK+L    HF+MA ++IRYYLNG+   ++ +++   AVATDGHR
Sbjct: 121 AQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNV--IAVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  +V    +  +   +I+PRK + E+ R+L   D  V + ++ +++ L    + +  +
Sbjct: 179 LAFCQVATEQEFPRQ-EVIIPRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIELISK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  V+P        +    L +++ R +IM+S + + V+  +S   + ++  
Sbjct: 238 LVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKISST 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N D  +A+E + + Y    +DI FN  YLL++++N+       D +   L  +NSS  I 
Sbjct: 298 NADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DSINIALGDANSSALIT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D     N D K    YV+MPMRI
Sbjct: 353 VPD-----NPDFK----YVVMPMRI 368


>gi|261378192|ref|ZP_05982765.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685]
 gi|269145661|gb|EEZ72079.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685]
          Length = 367

 Score =  188 bits (478), Expect = 9e-46,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++  DG   + A+  EI+I  + P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRDGQTRLLATDLEIQIDTSGPECSA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   +N     + +  G S F LQ+ P  +FP   
Sbjct: 64  ADFRITTNAKKFQDILRALPAGALVSLDWDN---NRLTLKAGKSRFALQTLPAEDFPQMN 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E V + FEL     K+++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 IGEDVSAVFELEQEAFKSMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + +   +I+PRK V E+ ++L++    ++V L + ++       ++  ++
Sbjct: 179 AYSACAIDADLPRT-EVILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++R SI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRVELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD+V   ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGSGLEVGFNIGYLMDVLRNIHSDDV---QLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|262374720|ref|ZP_06067992.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205]
 gi|262310376|gb|EEY91468.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205]
          Length = 382

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/401 (28%), Positives = 206/401 (51%), Gaps = 35/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q     L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLA 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  DGACIEAGETTVPARKLVEICKSLPSAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFPSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P    E  + +  ++    LK L E+T FAMA +++R+YL G    I++  L+   V 
Sbjct: 118 DYPLLSTENSLGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVT 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+ EV   +        IVPRKAVGE+ R+LS +D  + + +    +++ I + 
Sbjct: 176 TDGHRLALCEVLASSTATSSIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTP 235

Query: 236 S-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++
Sbjct: 236 SRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLR 295

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V L+ S D L +  +NP+  +A E + + Y + P+++ FN +Y+L+++  +       D
Sbjct: 296 GVFLNFSQDTLQLRANNPEQDEASEDLVIQYQDAPLEMSFNAQYILDVLSVLDG-----D 350

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V   +  +N SV ++      +          YV+MPMR+
Sbjct: 351 DVRMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 382


>gi|152977690|ref|YP_001343319.1| DNA polymerase III subunit beta [Actinobacillus succinogenes 130Z]
 gi|150839413|gb|ABR73384.1| DNA polymerase III, beta subunit [Actinobacillus succinogenes 130Z]
          Length = 366

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 115/386 (29%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R ++L+ L   C ++  +  +PV  +VLLQ     L I  +  E+E++     +
Sbjct: 1   MQFIVSRENLLKPLQQVCGVLSSRPNVPVLNNVLLQIEGDRLTITGTDLEVELSTQAQLN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ T+ A    DI R L + A I+   E +      +    + F L +FP  E+P+
Sbjct: 61  SHGEGTFTIPAKKFLDICRSLPEDAVITVDFEQDRAI---VRSSRTKFNLATFPAEEYPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F ++ + ++ L+E T F+MA  + RY+LNG+ F      L+   VATDGHR
Sbjct: 118 LTDWQSEVDFTVSQATMRRLIEATQFSMANNDARYFLNGMKFETEGNLLR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV  +++  Q  +  S+I+PRK V E+ R+L ++ +   +V +  +   + + S+  + 
Sbjct: 176 LAVCTIEL-EQDLQNHSVILPRKGVLELARLLDATSEQPARVQIGTNNFRVELGSVVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P + ++ L  +  NL+Q+  R SI+SS +++ V+L L+ ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNANRILESDWENLKQSFVRASILSSEKVRTVRLELNQNQLTITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +  E ++V Y   P++I FN  Y+L++++ +         V  R   ++SS  I
Sbjct: 295 KNPEQEEVEEILDVSYQSEPIEIGFNVSYVLDVLNALKC-----QRVRVRFTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D ++N      A YV+MPM++
Sbjct: 350 ----EDCEDN-----TAEYVIMPMKL 366


>gi|325127477|gb|EGC50406.1| DNA polymerase III, beta subunit [Neisseria meningitidis N1568]
          Length = 367

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|308389996|gb|ADO32316.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
           alpha710]
          Length = 367

 Score =  188 bits (478), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALLAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPH-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L S  L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|260581929|ref|ZP_05849725.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127]
 gi|260095122|gb|EEW79014.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127]
          Length = 366

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQDRAL---VQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|161869313|ref|YP_001598480.1| DNA polymerase III subunit beta [Neisseria meningitidis 053442]
 gi|161594866|gb|ABX72526.1| DNA polymerase III, beta subunit [Neisseria meningitidis 053442]
          Length = 367

 Score =  188 bits (477), Expect = 1e-45,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|258593679|emb|CBE70020.1| DNA polymerase III, beta-subunit [NC10 bacterium 'Dutch sediment']
          Length = 368

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R D+L  +G    ++E K ++P+  H+LL+ +   L +  +  +I +   +P  
Sbjct: 1   MHIKVLRDDLLNGVGPIQAVVETKRSLPILSHLLLETSPSYLSVFGTDLDIGVRKRVPGQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI +SA  LY+IVR+L     +    + EL     I+ G+S F ++     +FPS
Sbjct: 61  VVKEGSIALSARKLYEIVRELP-ATSVDLSVDGEL--TATITCGNSEFRVKGLSRDDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E +      +   + ++++ RT FA+++++ RY LNGI F +  +D+K+  VATDGHR
Sbjct: 118 MREPKQ-SGIVIDRRLFRDMIRRTLFAVSSDQTRYTLNGILFRVTPKDVKM--VATDGHR 174

Query: 181 LAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           LA+   ++ +   Q+      I+PRKA  E L++L  +   + + +S++ + L  +   +
Sbjct: 175 LAMTNHELSSDSCQLTAAIDAIIPRKAAAETLKLLREEPGQITIEISDNHLLLQTDDTLI 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+G+FPNY+ VIP +  KE+ VN       + R S +   R     +  +  +L +
Sbjct: 235 DARLIEGQFPNYEQVIPANATKEVTVNREAFLAGLRRTSTILGERALPTTMKFTPGRLLL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N D+G+A E +++ Y    M + FN +Y+L+ +  +++     ++   RL    S  
Sbjct: 295 SCVNLDLGEARERLDIEYQHDEMSVGFNARYILDFLGALTT-----EQATIRLQDPLSPA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              GKD       D +     V+MPMR+
Sbjct: 350 LFSGKD-------DKQYTC--VIMPMRL 368


>gi|294788719|ref|ZP_06753960.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453]
 gi|294483201|gb|EFG30887.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453]
          Length = 367

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 214/387 (55%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPAS 60
           +  +R  +L+ L     I+ERK+T+P+  +VLL++ DG + I A+  EI+I   GA    
Sbjct: 4   LQTDRDSLLKPLQAVTGIVERKHTLPILSNVLLESKDGRIHILATDLEIQIHTQGAENDK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D    +T +A  L DI+R L DGA +   + +N L     +  G S F LQ+ P  +FP
Sbjct: 64  GDF--RLTTNAKKLQDILRALPDGAIVQLDWADNRL----TLKAGKSRFNLQTLPAEDFP 117

Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +    +     F L     K+++ +  ++MA ++IRYYLNG+   + E  L+L  V+TDG
Sbjct: 118 TMSVNDSAQVRFSLTQETFKHMISQVQYSMAVQDIRYYLNGLLLQVEENQLRL--VSTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA +  +I A ++K   +I+PRK V E+ ++L+  +  +++ L  ++I L      + 
Sbjct: 176 HRLAYSVCEIEANLSKT-EVILPRKTVLELNKLLNQPNELIEIELLGNQIRLTCNDTVIV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  NDK   ++ T+L  A++R +I+++ + + VKL LS+  L ++
Sbjct: 235 SKVIDGKFPDYNRVIPLDNDKIFLISRTDLLGALERSAILANEKFKGVKLFLSAGLLRVS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y    +++ FN  YL +++ N   D++   ++    +   SS+F
Sbjct: 295 CTNNEQEEAQEELEIAYQGESLEVSFNINYLTDVLRNTHCDDI---QIALG-NEHKSSLF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  + D K          YV+MPMRI
Sbjct: 351 TKPDEADFK----------YVVMPMRI 367


>gi|145628066|ref|ZP_01783867.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21]
 gi|144979841|gb|EDJ89500.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21]
          Length = 366

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQDRAL---VQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++    S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQELQNH-SVILPRKGVLELVRLLETSDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +       ++V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKC-----NQVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  +N +D+     YV+MPMR+
Sbjct: 350 -------ENCEDSSCE--YVIMPMRL 366


>gi|296314156|ref|ZP_06864097.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839191|gb|EFH23129.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 367

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 209/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLMLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|300689716|ref|YP_003750711.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07]
 gi|299076776|emb|CBJ49383.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07]
          Length = 371

 Score =  187 bits (476), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT       D
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59

Query: 63  VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG+       TV+A  L DI+R + DG       +  +    ++  G S F LQ+    
Sbjct: 60  -CGAGNGDIATTVAARKLVDILRAMPDGEVALTLNDKRM----SVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVA
Sbjct: 115 EFPTVAEASDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++    
Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  
Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   D D+           YV+MPMRI
Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371


>gi|332286196|ref|YP_004418107.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7]
 gi|330430149|gb|AEC21483.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7]
          Length = 369

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 119/385 (30%), Positives = 208/385 (54%), Gaps = 21/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           +   R  +L+ L     I+ER+NT+P+  ++LL+     +   A+  E++IT      V 
Sbjct: 4   VQATRDALLKPLSTVAGIVERRNTLPILANILLRKEGKSVAFIATDLEVQITTHAEFGVG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS- 120
           D   S TV+A  L DI+R L D   I   K     +++++  G S F LQ+   +EFP+ 
Sbjct: 64  DDNESTTVAARKLLDILRALPDSGDI---KLGLASSKLSVQSGKSRFALQTLGATEFPTL 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + E++  SF L    LK+L    HFAMA ++IRYYLNG+ F      ++  AVATDGHR
Sbjct: 121 AQPEKWDVSFALPQKTLKHLFNMVHFAMAQQDIRYYLNGLLFVFEPGFVR--AVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +V  I     +IVPRK V E+ R+L   D  V + ++  +I      + +  +
Sbjct: 179 LAHSGT-VVEGIESKHDVIVPRKTVLEMQRLLGDTDEPVSIDVATGQIRFRFGDVELVSK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP++  VIP +  +   VN   L+ ++ R +I+++ +++ V++ LS ++L ++  
Sbjct: 238 LVEGKFPDFTRVIPSNYTRHFSVNREILQGSLQRAAILTTDKLKGVRVQLSDNQLKISSS 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E +++ Y    +D+ FN  YLL+++ N+ ++ +   +   + D + S++   
Sbjct: 298 NAEQEEAQEEIDIDYGHEALDVGFNVSYLLDVLANVKTETI---QWSVQPDVNASALITS 354

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +D   K          YV+MPMRI
Sbjct: 355 PEDDQFK----------YVVMPMRI 369


>gi|296134506|ref|YP_003641748.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12]
 gi|295794628|gb|ADG29418.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12]
          Length = 371

 Score =  187 bits (475), Expect = 2e-45,   Method: Compositional matrix adjust.
 Identities = 123/391 (31%), Positives = 213/391 (54%), Gaps = 29/391 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPAS 60
           ++T  R ++L+LLG    I+ER+ T+P+  +VL+Q N +G L I  S  E++I      +
Sbjct: 3   RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFI-TSDMEVQIRLQAGEA 61

Query: 61  VDVCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           V       +ITV+   L DI+R    G     + + ++     +    S F LQ+ P  +
Sbjct: 62  VQTSAEDAAITVNMRKLLDILRAASPGNVTLEWSDGKM----TVRAAKSRFSLQTLPAED 117

Query: 118 FPSTKEEEYV--YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           FP  +       ++  L   +LK L+  THFAMA  +IRYYLNG+ +  + + + L  VA
Sbjct: 118 FPLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--VA 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234
           TDGHR+ +A   +   + +   II+PRK V E+ R+LS +D + + ++L+ ++  L ++ 
Sbjct: 176 TDGHRMTLASAPLEKAVERR-EIILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDG 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           L  + +LI+G+FP+YQ V+P  +   L+V  T L+ A+ RV+I+++ + + V+++L    
Sbjct: 235 LEFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGL 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T  N +  +A E +++ Y    ++I FN  YL++ + N++S     D++   L   N
Sbjct: 295 LRLTSINAEQEEAQEEIDIDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDGN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS      D+          N  YV+MPMRI
Sbjct: 350 SSALFTMPDEP---------NFKYVVMPMRI 371


>gi|291612474|ref|YP_003522631.1| DNA polymerase III, subunit beta [Sideroxydans lithotrophicus ES-1]
 gi|291582586|gb|ADE10244.1| DNA polymerase III, beta subunit [Sideroxydans lithotrophicus ES-1]
          Length = 367

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/384 (31%), Positives = 212/384 (55%), Gaps = 25/384 (6%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           ++R+++L+ L     I+ERK  +P+  +VL++     +    +  EI+I   + A+ D  
Sbjct: 6   IDRNELLKPLQAVVGIVERKQPLPILSNVLIKKTKDSVRFITTDLEIQIEAQLRATFDAT 65

Query: 65  -GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             SIT+SA  L +I+R + D + ++   ++N+L  + N     S F LQ+ P  +FP   
Sbjct: 66  ESSITISAKKLQEILRAIPDNSMVTLDNQDNKLLVKAN----KSRFSLQTLPAQDFPILS 121

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           E+    S  E+   VL+ L+    +AMA ++IRYYLNG+   I+E  +KL  +ATDGHRL
Sbjct: 122 EQLIGASKIEIEQGVLRRLLSSVQYAMAQQDIRYYLNGVLLVIDETTIKL--IATDGHRL 179

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A    ++  +  K   +I+ RK V E+L++L+  +  V++ L+E ++ ++   + ++ ++
Sbjct: 180 AFISEELKEKHQKQ-EVILSRKTVNELLKLLADSEDKVQLELAEKQVRISFADVILTSKV 238

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP+Y  VIP   +  L ++   + QA+ R +I+S+ + + V+L L+   L +   N
Sbjct: 239 IDGKFPDYNRVIPAHTN-HLTLDRLTILQALQRAAILSNEKFRGVRLLLTEKNLRVISSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E +   Y+  P+DI FN  YLL+ I+NI++       V       NSS+ I  
Sbjct: 298 SEQEEAQEDIENDYSGAPLDIGFNVNYLLDGINNINT-----QTVTLSFGDQNSSLLITI 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            +K      D K    YV+MPMRI
Sbjct: 353 PEKS-----DYK----YVVMPMRI 367


>gi|254804281|ref|YP_003082502.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14]
 gi|254667823|emb|CBA03814.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14]
 gi|254670915|emb|CBA07499.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha153]
 gi|325204853|gb|ADZ00307.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M01-240355]
          Length = 367

 Score =  187 bits (475), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPHA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|17548158|ref|NP_521560.1| DNA polymerase III subunit beta [Ralstonia solanacearum GMI1000]
 gi|17430465|emb|CAD16938.1| probable dna polymerase III (beta chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 371

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT       D
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59

Query: 63  VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG+       TV+A  L DI+R + DG       +  +    ++  G S F LQ+    
Sbjct: 60  -CGAGNGDIATTVAARKLVDILRAMPDGEVALTLNDKRM----SVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVA
Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++    
Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  
Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   D D+           YV+MPMRI
Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371


>gi|34495457|ref|NP_899672.1| DNA polymerase III subunit beta [Chromobacterium violaceum ATCC
           12472]
 gi|34101313|gb|AAQ57682.1| DNA-directed DNA polymerase, beta subunit [Chromobacterium
           violaceum ATCC 12472]
          Length = 369

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 122/391 (31%), Positives = 211/391 (53%), Gaps = 33/391 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G +   A+  EI+IT A  +S +
Sbjct: 4   LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKGGQVGFLATDLEIQITTA--SSDE 61

Query: 63  VCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           + G    +T SA  L DI+R +   A ++   E   G  + +  G S F LQ+ P  +FP
Sbjct: 62  LPGEDFRLTTSAKKLQDILRAIPGNATVTL--EQLDGGRLVLKAGKSRFNLQTLPAEDFP 119

Query: 120 -----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
                S  E     SF L+   LK L+ +  +AMA ++IRYYLNG+    +   ++L  V
Sbjct: 120 LLSVGSAGES----SFTLSQRELKRLISQVQYAMAVQDIRYYLNGLLMQTDGNQVRL--V 173

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRLA A  D+ A + K   +I+PRK + E+ ++L   D  +K+ +  +++  +  +
Sbjct: 174 ATDGHRLAFASADVAATLPK-AEVILPRKTIIELYKLLQDSDDEIKIEVLANQVRFSFGA 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  +++DG+FP+Y  VIP  NDK   +       A+ R +I+++ + + V+L L+  K
Sbjct: 233 TVIISKVVDGKFPDYNRVIPLDNDKIFLIERLEFLHALQRAAILANEKFRGVRLVLAPGK 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N +  +A E + + +    ++I FN  YLL+++ N+ +D +   ++ F  DSS 
Sbjct: 293 MSILCTNSEQEEAEEELEIAFQGGTLEIGFNINYLLDVLTNLPADTL---QLAFG-DSSR 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S++F      D  N K       Y++MPMRI
Sbjct: 349 SALF---TIPDVSNFK-------YIVMPMRI 369


>gi|59800475|ref|YP_207187.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA 1090]
 gi|59717370|gb|AAW88775.1| putative DNA polymerase III, beta subunit [Neisseria gonorrhoeae FA
           1090]
          Length = 367

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 120/385 (31%), Positives = 208/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER +T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAFTGIVERLHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               IT +A    DI+R L  GA +S  + +N L     +  G S F LQ+ P ++FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPAADFPMM 119

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 NVGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  +
Sbjct: 178 LAYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   
Sbjct: 237 VIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F  
Sbjct: 297 NNEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT- 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                  NN + K    Y++MPMRI
Sbjct: 352 -----VPNNPNFK----YIVMPMRI 367


>gi|84394124|ref|ZP_00992858.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01]
 gi|84375270|gb|EAP92183.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01]
          Length = 304

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 101/322 (31%), Positives = 180/322 (55%), Gaps = 20/322 (6%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            GSITV +    DI R L D + I+   +   G  V +  G S F L + P ++FP+ ++
Sbjct: 3   AGSITVPSRKFLDICRGLPDSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIED 59

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
                   +  + L+ L+E+T F+MA +++RYYLNG+ F I  E   L +VATDGHR+AV
Sbjct: 60  WSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSILRSVATDGHRMAV 117

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
           ++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + +L+D
Sbjct: 118 SQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVD 176

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L   ++ +T +NP+
Sbjct: 177 GRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDTEMRITANNPE 236

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  I    
Sbjct: 237 QEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENAQ 291

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            DS         A YV+MP+R+
Sbjct: 292 DDS---------AMYVVMPIRL 304


>gi|237749315|ref|ZP_04579795.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13]
 gi|229380677|gb|EEO30768.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13]
          Length = 368

 Score =  187 bits (474), Expect = 3e-45,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 209/381 (54%), Gaps = 22/381 (5%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASVDVCG 65
           R ++L  L     I+ER++T+P+  ++L++     +   ++  EI+I T A   + +   
Sbjct: 8   RDNLLRPLQIVSGIVERRHTLPILANILIRKEGEAVSFLSTDTEIQIVTHAEIGTNEENT 67

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP-STKEE 124
           + TV+A  L DI+R L D + I+  + ++    + +  G S F LQ+ P  +FP  ++  
Sbjct: 68  TTTVAARKLLDILRALPDTSDIAISQNDK---RLVVQAGKSRFSLQTLPADDFPIVSQPA 124

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           EY  S  ++   LKNL+   +F+MA ++IRYYLNG+   ++    K+ AVATDGHRLA  
Sbjct: 125 EYETSVTVSQKALKNLLGMVYFSMAQQDIRYYLNGLLLQVDGN--KMTAVATDGHRLAFC 182

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           +++   + +K   +I+PRK + E+ R+L   D  V++  S  ++      + +  +L++G
Sbjct: 183 QMETDQEFSK-NDVIIPRKTILELQRLLEDSDEPVRIDFSGGQVRFVFGDVELISKLVEG 241

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
           +FP+Y  VIP     +  ++   L++A+ R +IM+S + + ++  L+   L ++  N D 
Sbjct: 242 KFPDYTRVIPKGYKNKFTLSREQLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
            +AIE + + Y    +DI FN  YLL+++ N+      +++V   L  +NSS  +   D 
Sbjct: 302 EEAIEEIELDYGGDSIDIGFNVTYLLDVLGNLK-----NEQVSVELGDANSSALVSVPD- 355

Query: 365 DSKNNKDNKVNAFYVLMPMRI 385
               N D K    YV+MPMRI
Sbjct: 356 ----NSDFK----YVVMPMRI 368


>gi|15677733|ref|NP_274896.1| DNA polymerase III subunit beta [Neisseria meningitidis MC58]
 gi|7227158|gb|AAF42232.1| DNA polymerase III, beta subunit [Neisseria meningitidis MC58]
 gi|316985518|gb|EFV64465.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
 gi|325133541|gb|EGC56204.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13399]
 gi|325143791|gb|EGC66108.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M01-240013]
 gi|325200954|gb|ADY96409.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
 gi|325206809|gb|ADZ02262.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M04-240196]
          Length = 367

 Score =  187 bits (474), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 117/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++R SI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|261393233|emb|CAX50856.1| DNA polymerase III beta subunit [Neisseria meningitidis 8013]
          Length = 367

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPHA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|299065056|emb|CBJ36217.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CMR15]
          Length = 371

 Score =  186 bits (473), Expect = 4e-45,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 205/393 (52%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT       D
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQIT----THAD 59

Query: 63  VCGS------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG+       TV+A  L DI+R + DG       +  +    ++  G S F LQ+    
Sbjct: 60  -CGAGNGDIATTVAARKLVDILRAMPDGEVALTLNDKRM----SVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVA
Sbjct: 115 EFPTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++    
Sbjct: 173 TDGHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDIDDPVSVQLASNQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 GNIELISKLVEGKFPDFQRVIPKGYRNGFTIDRAFLQQALQRTAILTTDKFKGVRCMLDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  
Sbjct: 293 NVLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   D D+           YV+MPMRI
Sbjct: 348 SNSSALITLPDDDTFK---------YVVMPMRI 371


>gi|81251093|gb|ABB69891.1| DNA polymerase III beta chain [Nitrosovibrio sp. RY3C]
          Length = 370

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 208/388 (53%), Gaps = 26/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I   +  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+I    P S D
Sbjct: 4   IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63

Query: 63  ---VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
                 +ITV+A  L DI+R L D  Q++   +EN L     +  G S F LQ+ P  +F
Sbjct: 64  ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQENRL----QVKAGKSRFNLQTLPAEDF 119

Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P   E     +   L    LKNL+    +AMA ++IRYYLNG+   +  + LK+  VATD
Sbjct: 120 PRLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRL  A + +++Q  +   +I+PRKAV E+ + L   +  V V L ++++     ++ +
Sbjct: 178 GHRLGFASI-VMSQPQEKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG+FP+Y  VIP    K+  +N     Q + R SI+S+ + + V+L L++  L +
Sbjct: 237 VSKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N +  +A E + + Y+   +DI FN  YLL++++N++ + V   +  F   +S++ +
Sbjct: 297 VCSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTCETV---QCSFGDANSSALI 353

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G D D K          YV+MPMRI
Sbjct: 354 TIPGND-DFK----------YVVMPMRI 370


>gi|325139556|gb|EGC62096.1| DNA polymerase III, beta subunit [Neisseria meningitidis CU385]
          Length = 367

 Score =  186 bits (472), Expect = 5e-45,   Method: Compositional matrix adjust.
 Identities = 118/384 (30%), Positives = 208/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I    P S  
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTTGPESGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPRA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    ++  FN  YL++++ NI SD   D ++ F  D++ S++F   
Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHSD---DMQLAFG-DANRSTLFT-- 351

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                 NN + K    Y++MPMRI
Sbjct: 352 ----VPNNPNFK----YIVMPMRI 367


>gi|325129494|gb|EGC52323.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           OX99.30304]
          Length = 361

 Score =  186 bits (472), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 117/381 (30%), Positives = 208/381 (54%), Gaps = 21/381 (5%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
            R  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P       
Sbjct: 1   RRDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGAGDF 60

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EE 124
            IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP     E
Sbjct: 61  RITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMNVGE 117

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRLA A
Sbjct: 118 DISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRLAYA 175

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
              I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++IDG
Sbjct: 176 ACAIDADLPHA-EVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDG 234

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
           +FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L S  L +   N + 
Sbjct: 235 KFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNNEQ 294

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
            +A E + + Y    +++ FN  YL++++ NI SD++   ++ F  D++ S++F      
Sbjct: 295 EEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHSDDM---QLAFG-DANRSTLFT----- 345

Query: 365 DSKNNKDNKVNAFYVLMPMRI 385
              NN + K    Y++MPMRI
Sbjct: 346 -VPNNPNFK----YIVMPMRI 361


>gi|81251089|gb|ABB69888.1| DNA polymerase III beta chain [Nitrosovibrio sp. FJI82]
          Length = 370

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 124/388 (31%), Positives = 208/388 (53%), Gaps = 26/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I   +  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+I    P S D
Sbjct: 4   IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63

Query: 63  ---VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
                 +ITV+A  L DI+R L D  Q++   +EN L     +  G S F LQ+ P  +F
Sbjct: 64  ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQENRL----QVKAGKSRFNLQTLPAEDF 119

Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P   E     +   L    LKNL+    +AMA ++IRYYLNG+   +  + LK+  VATD
Sbjct: 120 PRLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRL  A + +++Q  +   +I+PRKAV E+ + L   +  V V L ++++     ++ +
Sbjct: 178 GHRLGFASI-VMSQPREKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG+FP+Y  VIP    K+  +N     Q + R SI+S+ + + V+L L++  L +
Sbjct: 237 VSKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N +  +A E + + Y+   +DI FN  YLL++++N++ + V   +  F   +S++ +
Sbjct: 297 VCSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTCETV---QCSFGDANSSALI 353

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G D D K          YV+MPMRI
Sbjct: 354 TIPGND-DFK----------YVVMPMRI 370


>gi|29653366|ref|NP_819058.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493]
 gi|153209960|ref|ZP_01947547.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924212|ref|ZP_02220044.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334]
 gi|212211671|ref|YP_002302607.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212]
 gi|212217690|ref|YP_002304477.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154]
 gi|29540628|gb|AAO89572.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493]
 gi|120575206|gb|EAX31830.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916346|gb|EDR34950.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334]
 gi|212010081|gb|ACJ17462.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212]
 gi|212011952|gb|ACJ19332.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154]
          Length = 369

 Score =  186 bits (471), Expect = 6e-45,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 203/387 (52%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R  +L+ L     ++ERK T+P+  +VLL      L I  +  E+E+ G     
Sbjct: 1   MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +   S  +T+    L DI R L D A I  +++ E   ++ +  G S F L + P  +F
Sbjct: 61  KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E      L  S  ++L+ RTHFAMA +++RYYLNG+         KL A+ATDG
Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +         II+PRK + E+LR+L   ++   + +  + I ++    + +
Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FP+ + VIP   DK+  ++   L+QA+ R +I+ + + + V+  L    L + 
Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+   A E +N+ Y    +DI FN  Y+L+I++ ++S  +    + F   +++SSV 
Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNI---RLTF--STADSSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I        N  +N  ++ +V+MPMR+
Sbjct: 351 I--------NEVENPSDSAFVVMPMRL 369


>gi|307728078|ref|YP_003905302.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1003]
 gi|307582613|gb|ADN56011.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1003]
          Length = 367

 Score =  186 bits (471), Expect = 7e-45,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGETVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    A+   +I+PRK + E+ R+L   D ++K+ ++++++      + + 
Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367


>gi|323524379|ref|YP_004226532.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1001]
 gi|323381381|gb|ADX53472.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1001]
          Length = 367

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGESVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    A+   +I+PRK + E+ R+L   D ++K+ ++++++      + + 
Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367


>gi|160872676|ref|ZP_02062808.1| DNA polymerase III, beta subunit [Rickettsiella grylli]
 gi|159121475|gb|EDP46813.1| DNA polymerase III, beta subunit [Rickettsiella grylli]
          Length = 370

 Score =  186 bits (471), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 121/395 (30%), Positives = 221/395 (55%), Gaps = 35/395 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M+ T+ R  +L+ L     +IER+ T+P+  ++L++ ND  L +  +  E+E+ G I   
Sbjct: 1   MQFTINREILLKPLQLVTAVIERRQTLPILSNLLIRLNDRNLSLLGTDMEVELAGRITLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            P      G+ T  A  L DI R L + +++ F    + G ++ +  G   F L + P +
Sbjct: 61  KPGQ---SGTTTAPARKLMDICRSLPEESELKF---QQKGDKLYLQSGRCRFNLSTLPAT 114

Query: 117 EFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           +FP   +         F L+   L++L+E T+FAMA +++RY+LNG+ + ++   L+  A
Sbjct: 115 DFPISEALDNHPEQAKFVLSPKGLRSLIESTNFAMAHQDVRYFLNGMLWELDRGSLR--A 172

Query: 174 VATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHL 230
           VATDGHRLA  V E +I     +   IIVPRKA+ E+ R+LS +++ S+ + L+++++ +
Sbjct: 173 VATDGHRLALNVKEANITVDNNQ---IIVPRKAIYELSRLLSDEENDSLTIFLTKNQLKV 229

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            ++  + + +LIDG FP+Y  VIP S DK   ++    + ++ RVS++S+ + ++V L L
Sbjct: 230 AMQDYTFTSKLIDGTFPDYDRVIPKSGDKIFEIDRDLFKASLLRVSVLSNDKHKSVCLEL 289

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             + L +  +N +   A + +++ Y+   + I FN  YL+++++++ +       V   L
Sbjct: 290 RRNLLRIFANNLEQEDAEDYLDIAYHGKDISIAFNINYLIDVLNSLPA-----GPVKITL 344

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S+ +SV +  K+KD+           YV+MPMRI
Sbjct: 345 TSAEASVRLESKEKDA---------GLYVIMPMRI 370


>gi|161831398|ref|YP_001595902.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331]
 gi|161763265|gb|ABX78907.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331]
          Length = 369

 Score =  185 bits (470), Expect = 8e-45,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 203/387 (52%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R  +L+ L     ++ERK T+P+  +VLL      L I  +  E+E+ G     
Sbjct: 1   MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +   S  +T+    L DI R L D A I  +++ E   ++ +  G S F L + P  +F
Sbjct: 61  KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E      L  S  ++L+ RTHFAMA +++RYYLNG+         KL A+ATDG
Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +         II+PRK + E+LR+L   ++   + +  + I ++    + +
Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALAAIRIGNNHIGVSTNDFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FP+ + VIP   DK+  ++   L+QA+ R +I+ + + + V+  L    L + 
Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+   A E +N+ Y    +DI FN  Y+L+I++ ++S  +    + F   +++SSV 
Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNI---RLTF--STADSSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I        N  +N  ++ +V+MPMR+
Sbjct: 351 I--------NEVENPSDSAFVVMPMRL 369


>gi|225025477|ref|ZP_03714669.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC
           23834]
 gi|224941761|gb|EEG22970.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC
           23834]
          Length = 367

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 208/385 (54%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ERK+T+P+  +VL++   G   I A+  EI+I    P +  
Sbjct: 4   LEAERDTLLKPLQAVTGIVERKHTLPILSNVLIERTGGQTNILATDLEIQIHTHGPHTDA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP-S 120
               IT +A  L DI+R L +GA ++  + +N L     +  G S F LQ+ P  +FP  
Sbjct: 64  EDFRITTNAKKLQDILRALPEGAIVALDWAQNRL----TLKTGKSRFALQTLPAEDFPLM 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  EE V +F L     +N++ +  +AMA ++IRYYLNG+   +   +L+L  VATDGHR
Sbjct: 120 SIGEEVVSAFTLPQETFRNMLSQVQYAMAVQDIRYYLNGLLMQVEGSNLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   I A + K   +I+PRK V E+ ++L+  +  V V L  +++        +  +
Sbjct: 178 LAYSAAVIDADLPKA-EVILPRKTVLELFKLLNRPEEPVTVELLNNQVRFRCNDTVVVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG+FP++  VIP  NDK   +       A++R +I+++ + + V+L L    L +   
Sbjct: 237 VVDGKFPDFNRVIPQDNDKIFLLGRQPFLGALERAAILANEKFRGVRLQLRPGLLSVLCS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    +++ FN  YL++++ N+ ++++   ++ F  D++ S++F  
Sbjct: 297 NSEQEEAREELEIAYQGAELEVGFNINYLMDVLRNVHAEDI---QLAFG-DANRSTLFTI 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             + D K          Y++MPMRI
Sbjct: 353 PDNADFK----------YIVMPMRI 367


>gi|307825355|ref|ZP_07655574.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96]
 gi|307733530|gb|EFO04388.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96]
          Length = 366

 Score =  185 bits (470), Expect = 9e-45,   Method: Compositional matrix adjust.
 Identities = 117/385 (30%), Positives = 203/385 (52%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R +IL  L     +IE++ T+P+  +VL+   +  L +  +  EI+I   I  +
Sbjct: 1   MKFIINREEILVPLQQIVSVIEKRQTMPILSNVLMVIEENQLILTGTDLEIQIIAKINIA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSITV A    DI R L +GA+I F  +++   +V I+   S F L   P   +P 
Sbjct: 61  TATPGSITVPARKFLDICRLLPNGAEIKFELQDD---KVKIASSRSRFSLSCLPADNYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      + +   K  +++T F MA +++RYYLNG+  +++   LKL  VA+DGHR
Sbjct: 118 FAESELENHLFINAGKFKKALDKTVFCMANQDVRYYLNGLLLNVSNSKLKL--VASDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++ E ++         II+PRK V E+ R+L   ++ +KV  S + I + I++L  S +
Sbjct: 176 LSIYEDNLDQATGFEARIILPRKGVLELNRLLDDPEAELKVEFSSNNIRIFIKNLIFSAK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+D ++P++  V       ++ +    L++A+ RV+I+S+ + + V   +  D L ++  
Sbjct: 236 LVDSKYPDFGKVFQQEFFNQIHIQKQILKEALTRVAILSNEKFKGVTFDIKPDSLKISTH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + + Y   P+ I FN +YLL+ + N+ S     +  V  + S+ SS FI 
Sbjct: 296 NPEHDEAEEELFIEYTGEPLTIAFNAQYLLDAVSNLDS-----ELAVLTIASNASSCFI- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D   +   K    +++MPMR+
Sbjct: 350 ----DEPGDCGYK----FIVMPMRL 366


>gi|329902528|ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548756|gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 351

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 110/368 (29%), Positives = 199/368 (54%), Gaps = 22/368 (5%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIV 78
           I+ER++T+P+  ++L++ +   +   ++  E++IT  I     +   + TV+A  L DI+
Sbjct: 4   IVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLLDIL 63

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS-TKEEEYVYSFELASSVL 137
           R L +   +S    N+    + +  G S F LQ+    EFP+ T+ E Y     L    L
Sbjct: 64  RALPESGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQKTL 120

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
           K+L    HF+MA ++IRYYLNG+   ++ +++   AVATDGHRLA  +V+   +  +   
Sbjct: 121 KHLFNMVHFSMAQQDIRYYLNGLLLVVDGKNV--IAVATDGHRLAFCQVETEQEFTRQ-E 177

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           +I+PRK + E+ R+L   D  V++ ++ +++ L    + +  +L++G+FP+Y  V+P   
Sbjct: 178 VIIPRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPKGY 237

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE 317
                +    L +++ R +IM+S + + V+  ++   + ++  N D  +++E + + Y  
Sbjct: 238 KNNFTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDYGG 297

Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377
             +DI FN  YLL++++N+       D+V   L  +NSS  I   D     N D K    
Sbjct: 298 DSVDIGFNVTYLLDVLNNLKC-----DQVNIALGDANSSALITIPD-----NADFK---- 343

Query: 378 YVLMPMRI 385
           YV+MPMRI
Sbjct: 344 YVVMPMRI 351


>gi|187927114|ref|YP_001897601.1| DNA polymerase III subunit beta [Ralstonia pickettii 12J]
 gi|309780181|ref|ZP_07674932.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|187724004|gb|ACD25169.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12J]
 gi|308920884|gb|EFP66530.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 371

 Score =  185 bits (470), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 202/392 (51%), Gaps = 33/392 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57
           +   R ++L  L     I+ER++T+P+  ++L+      +   ++  EI+IT     GA 
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADCGAG 63

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              V    + TV+A  L DI+R + DG       +  +     +  G S F LQ+    E
Sbjct: 64  AGDV----ATTVAARKLVDILRAMPDGEVALTLNDKRM----TVQSGKSRFALQTLAAEE 115

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVAT
Sbjct: 116 FPTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           DGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++     
Sbjct: 174 DGHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFG 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++
Sbjct: 234 NIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTN 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  S
Sbjct: 294 VLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDS 348

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           NSS  I   D D+           YV+MPMRI
Sbjct: 349 NSSALITLPDDDTFK---------YVVMPMRI 371


>gi|170694068|ref|ZP_02885224.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M]
 gi|170141140|gb|EDT09312.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M]
          Length = 367

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 213/387 (55%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDTVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + ++Y  +  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    A+   +I+PRK + E+ R+L   D ++K+ ++++++      + + 
Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y+   +DI FN  YLL+++ N+     VD   V   D+S+S++ 
Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK----VDTLQVSLGDASSSALI 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++ + K          YV+MPMRI
Sbjct: 351 TIPENDEFK----------YVVMPMRI 367


>gi|134294130|ref|YP_001117865.1| DNA polymerase III subunit beta [Burkholderia vietnamiensis G4]
 gi|134137287|gb|ABO53030.1| DNA polymerase III, beta subunit [Burkholderia vietnamiensis G4]
          Length = 368

 Score =  185 bits (469), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFAASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I         +IVPRK + E+ R+L   D +V + +++++       + + 
Sbjct: 176 HRLAFSSMKIEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGGVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368


>gi|241661627|ref|YP_002979987.1| DNA polymerase III subunit beta [Ralstonia pickettii 12D]
 gi|240863654|gb|ACS61315.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12D]
          Length = 371

 Score =  184 bits (468), Expect = 1e-44,   Method: Compositional matrix adjust.
 Identities = 118/392 (30%), Positives = 202/392 (51%), Gaps = 33/392 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57
           +   R ++L  L     I+ER++T+P+  ++L+      +   ++  EI+IT     GA 
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADCGAG 63

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +    + TV+A  L DI+R + DG       +  +     +  G S F LQ+    E
Sbjct: 64  AGDI----ATTVAARKLVDILRAMPDGEVALTLNDKRM----TVQSGKSRFALQTLAAEE 115

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVAT
Sbjct: 116 FPTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           DGHRLA   V+   Q A       +I+PRK + E+ R+L   D  V V L+ +++     
Sbjct: 174 DGHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFG 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++
Sbjct: 234 NIELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTN 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  S
Sbjct: 294 VLKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDS 348

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           NSS  I   D D+           YV+MPMRI
Sbjct: 349 NSSALITLPDDDTFK---------YVVMPMRI 371


>gi|253995376|ref|YP_003047440.1| DNA polymerase III subunit beta [Methylotenera mobilis JLW8]
 gi|253982055|gb|ACT46913.1| DNA polymerase III, beta subunit [Methylotenera mobilis JLW8]
          Length = 366

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 114/386 (29%), Positives = 208/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+E+++T+P+  ++LL+A    + + A+  E++I+ ++ ++
Sbjct: 1   MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSVDSA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
                S T+SA  L DI R L D + I+    +   + + +  G S F LQ+ P +++P 
Sbjct: 61  TSNDFSTTISAKKLLDICRSLPDNSDINMATND---SRITVKAGKSRFNLQTLPAADYPV 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            TK +       +    LK L+++  FAMA ++IRYYLNG+   +     +L  V TDGH
Sbjct: 118 MTKTQSQGTVITIPQRQLKELLKQVEFAMAQQDIRYYLNGLLVEVVAN--RLNIVGTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+    ++     K   +I+PRK V E++++L   +  V V ++ ++++ +  ++ +  
Sbjct: 176 RLSFTSTELKENYEKQ-DVILPRKTVIELIKLLDDSEEDVNVEIANNQVNFSFGNIRLIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG+FP+Y  VIP  +          +  A+ R SI+S+ + + +++ LS++ L +  
Sbjct: 235 KVIDGKFPDYNRVIPTGHQNTFTTERLGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  +A E + + Y    +DI FN  YL+++++N +S     ++V F    +NSS  I
Sbjct: 295 TNSDQEEAEEELEIAYGSDALDIGFNVTYLIDVLNNTNS-----EQVTFSFADANSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   NN D K    YV+MPMRI
Sbjct: 350 T-----LPNNPDYK----YVVMPMRI 366


>gi|209515896|ref|ZP_03264758.1| DNA polymerase III, beta subunit [Burkholderia sp. H160]
 gi|209503744|gb|EEA03738.1| DNA polymerase III, beta subunit [Burkholderia sp. H160]
          Length = 367

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + +G Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDSVATTVAARKLLDILRAMPEG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    A+   +I+PRK + E+ R+L   D +VK+ ++++++      + + 
Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTVKIDIAQTQVKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNKFLIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367


>gi|325267546|ref|ZP_08134198.1| DNA-directed DNA polymerase III beta subunit [Kingella
           denitrificans ATCC 33394]
 gi|324980896|gb|EGC16556.1| DNA-directed DNA polymerase III beta subunit [Kingella
           denitrificans ATCC 33394]
          Length = 367

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/382 (30%), Positives = 204/382 (53%), Gaps = 25/382 (6%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPASVDVC 64
           R D+L+ L     I+ERK+T+P+  ++LLQ+ +G +++ A+  EI+I   GA  A  D  
Sbjct: 8   RDDLLKPLQAVTGIVERKHTLPILSNILLQSENGQVQLLATDLEIQIHTLGAQGAQPDF- 66

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-E 123
             IT +A  L DI+R L D + +     +    ++ +  G S F LQ+ P  +FP+   +
Sbjct: 67  -RITTNAKKLQDILRALPDSSTVQLDLADH---KLTLKAGKSRFNLQTLPAQDFPTMNVD 122

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           E    +F L    LK+++ +   +MA ++IR+YLNG+        L+L  VATDGHRLA 
Sbjct: 123 ENTSAAFALPQETLKHMISQVQHSMAVQDIRFYLNGLLMQTEGNQLRL--VATDGHRLAF 180

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
               +  ++ K   +I+PRK V E+ ++L+    +V V L +++I        +  ++ID
Sbjct: 181 TSATLETELPKH-DVILPRKTVLELNKLLTQPKENVVVELLDNQIRFRCNDTVIVSKVID 239

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G FP+Y  VIP  N     ++  +L  A++R SI+++ + + V+L +    L +T  N +
Sbjct: 240 GRFPDYNRVIPMDNKNIFVIDRLSLLGALERSSILANEKFRGVRLLVQPGSLHITCTNNE 299

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A E +++ Y    +D+ FN  +LL+++ N+ SDEV   ++ F              D
Sbjct: 300 QEEASEELDIAYQGESLDVGFNITFLLDLLRNVHSDEV---QLAF-----------GSAD 345

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
           + +     N+    YV+MPMRI
Sbjct: 346 RATLFTVPNRPEFKYVVMPMRI 367


>gi|295675103|ref|YP_003603627.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002]
 gi|295434946|gb|ADG14116.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002]
          Length = 367

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 209/387 (54%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDSVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    A+   +I+PRK + E+ R+L   D ++ + ++++++      + + 
Sbjct: 176 HRLAFSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDTLNIDIAQTQVKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+  + ++    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNKFQIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLKV-----DMLQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367


>gi|304570547|ref|YP_265835.2| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
          Length = 370

 Score =  184 bits (468), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 217/388 (55%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V + D+ + L +   +IE+++T+P+  +VLL A++  L I A+  ++     I  +
Sbjct: 1   MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQI-NN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V+V   G+ T ++ ++YDI+RK   G +I+    +   +++ +    S F L     SEF
Sbjct: 60  VEVIEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDV--SKLQVESEKSVFNLNCISASEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176
           P T E      F + S  L  L+ +  F+++ +E R+YL+GIFFH  + + K  L A AT
Sbjct: 118 PLTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HR++++++ +  Q+   P II+P+K + ++  +L S D  VK+S  +S+I   + +  
Sbjct: 178 DSHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSI 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +LIDG+FPNY  VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L 
Sbjct: 237 LISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLN 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++V+N + G   ES+ V ++   ++I FN +YL+++   +  D++   E+ F  D+ + +
Sbjct: 297 LSVNNTNSGDGKESLTVKFDH-DLEISFNSRYLIDVASQLDGDKI---EIFFN-DTGSPA 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     D DS           +V+MPM+
Sbjct: 352 LIKDPGDFDS----------IFVVMPMK 369


>gi|262377660|ref|ZP_06070880.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145]
 gi|262307419|gb|EEY88562.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145]
          Length = 382

 Score =  184 bits (467), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 118/403 (29%), Positives = 207/403 (51%), Gaps = 39/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  ++ +Q     L +  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNLKIQVTAQALTVTGSDLEVELVASTALA 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L DI + L   A +     E++      +  G+S F L + P  
Sbjct: 61  EGACLQEGETTVPARKLIDICKSLPSAALVDLHITEDQ---RCILKSGNSRFVLGTLPAD 117

Query: 117 EFPSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P    E    +   +    LK L E+T FAMA +++R+YL G    I+   L+  AV 
Sbjct: 118 DYPLLNTENTQGTQVTVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLR--AVT 175

Query: 176 TDGHRLAVAEVDIVAQ-IAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           TDGHRLA+ E   VAQ  A  P   IVPRKAV E+ R+LS +D  + + +    +++ I 
Sbjct: 176 TDGHRLALCET--VAQSTATQPIQAIVPRKAVAELQRLLSVEDEQLSLLIGRELLNVTIN 233

Query: 234 SLS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
             S            + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +
Sbjct: 234 MSSRDKEQADIIVRFTTKLIDGKFPDYRRVIPRGGDKVVMIAHDVFKQSLQRVAILSNEK 293

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ V L+ ++D L +  +NP+  +AIE + + Y + P+++ FN +YL+E++  +      
Sbjct: 294 LRGVFLNFNADSLQLRANNPEQDEAIEDLVIQYADSPLEMSFNAQYLIEVLGVLDG---- 349

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            D+V   +  +N SV ++      +          YV+MPMR+
Sbjct: 350 -DDVSMTMTEANQSVLVQDPAHTDQT---------YVVMPMRV 382


>gi|91762458|ref|ZP_01264423.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718260|gb|EAS84910.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 370

 Score =  184 bits (466), Expect = 2e-44,   Method: Compositional matrix adjust.
 Identities = 120/388 (30%), Positives = 217/388 (55%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V + D+ + L +   +IE+++T+P+  +VLL A++  L I A+  ++     I  +
Sbjct: 1   MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQI-NN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V+V   G+ T ++ ++YDI+RK   G +I+    +   +++ +    S F L     SEF
Sbjct: 60  VEVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTDV--SKLQVESEKSVFNLNCISASEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176
           P T E      F + S  L  L+ +  F+++ +E R+YL+GIFFH  + + K  L A AT
Sbjct: 118 PLTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HR++++++ +  Q+   P II+P+K + ++  +L S D  VK+S  +S+I   + +  
Sbjct: 178 DSHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSI 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +LIDG+FPNY  VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L 
Sbjct: 237 LISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLN 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++V+N + G   ES+ V ++   ++I FN +YL+++   +  D++   E+ F  D+ + +
Sbjct: 297 LSVNNTNSGDGKESLTVKFDH-DLEISFNSRYLIDVAAQLDGDKI---EIFFN-DTGSPA 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     D DS           +V+MPM+
Sbjct: 352 LIKDPGDFDS----------IFVVMPMK 369


>gi|53717713|ref|YP_106699.1| DNA polymerase III subunit beta [Burkholderia pseudomallei K96243]
 gi|53724902|ref|YP_101863.1| DNA polymerase III subunit beta [Burkholderia mallei ATCC 23344]
 gi|67642368|ref|ZP_00441125.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4]
 gi|76811898|ref|YP_331716.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1710b]
 gi|121599744|ref|YP_994143.1| DNA polymerase III subunit beta [Burkholderia mallei SAVP1]
 gi|124384769|ref|YP_001028200.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10229]
 gi|126438733|ref|YP_001057143.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 668]
 gi|126448071|ref|YP_001079585.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10247]
 gi|134281596|ref|ZP_01768304.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305]
 gi|167001181|ref|ZP_02266980.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20]
 gi|167717461|ref|ZP_02400697.1| DNA polymerase III subunit beta [Burkholderia pseudomallei DM98]
 gi|167736496|ref|ZP_02409270.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 14]
 gi|167813574|ref|ZP_02445254.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 91]
 gi|167822115|ref|ZP_02453586.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 9]
 gi|167843720|ref|ZP_02469228.1| DNA polymerase III subunit beta [Burkholderia pseudomallei B7210]
 gi|167892199|ref|ZP_02479601.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 7894]
 gi|167900711|ref|ZP_02487916.1| DNA polymerase III subunit beta [Burkholderia pseudomallei NCTC
           13177]
 gi|167908928|ref|ZP_02496019.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 112]
 gi|167916969|ref|ZP_02504060.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BCC215]
 gi|217423948|ref|ZP_03455448.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576]
 gi|226193089|ref|ZP_03788699.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814479|ref|YP_002898930.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|254175303|ref|ZP_04881964.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399]
 gi|254184147|ref|ZP_04890738.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655]
 gi|254186618|ref|ZP_04893135.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194524|ref|ZP_04900955.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13]
 gi|254201968|ref|ZP_04908332.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH]
 gi|254207300|ref|ZP_04913651.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU]
 gi|254259557|ref|ZP_04950611.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a]
 gi|254298587|ref|ZP_04966038.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e]
 gi|254359609|ref|ZP_04975880.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280]
 gi|52208127|emb|CAH34057.1| DNA polymerase III, beta chain [Burkholderia pseudomallei K96243]
 gi|52428325|gb|AAU48918.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 23344]
 gi|76581351|gb|ABA50826.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710b]
 gi|121228554|gb|ABM51072.1| DNA polymerase III, beta subunit [Burkholderia mallei SAVP1]
 gi|124292789|gb|ABN02058.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10229]
 gi|126218226|gb|ABN81732.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 668]
 gi|126240941|gb|ABO04034.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10247]
 gi|134247263|gb|EBA47349.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305]
 gi|147747862|gb|EDK54938.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH]
 gi|147752842|gb|EDK59908.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU]
 gi|148028823|gb|EDK86755.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280]
 gi|157808569|gb|EDO85739.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e]
 gi|157934303|gb|EDO89973.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|160696348|gb|EDP86318.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399]
 gi|169651274|gb|EDS83967.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13]
 gi|184214679|gb|EDU11722.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655]
 gi|217393011|gb|EEC33033.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576]
 gi|225934689|gb|EEH30666.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506469|gb|ACQ98787.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238523507|gb|EEP86945.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4]
 gi|243063008|gb|EES45194.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20]
 gi|254218246|gb|EET07630.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a]
          Length = 367

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 205/387 (52%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + + 
Sbjct: 176 HRLAFSSMKIEGSFGRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367


>gi|83720585|ref|YP_443734.1| DNA polymerase III subunit beta [Burkholderia thailandensis E264]
 gi|167582969|ref|ZP_02375843.1| DNA polymerase III subunit beta [Burkholderia thailandensis TXDOH]
 gi|167620900|ref|ZP_02389531.1| DNA polymerase III subunit beta [Burkholderia thailandensis Bt4]
 gi|83654410|gb|ABC38473.1| DNA polymerase III, beta subunit [Burkholderia thailandensis E264]
          Length = 367

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 206/387 (53%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    ++   +IVPRK + E+ R+L   D +VK+ +++++       + + 
Sbjct: 176 HRLAFSSMKIEGSFSRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367


>gi|167834928|ref|ZP_02461811.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43]
          Length = 367

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 205/387 (52%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + + 
Sbjct: 176 HRLAFSSMKIEGAFGRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367


>gi|53802864|ref|YP_115419.1| DNA polymerase III subunit beta [Methylococcus capsulatus str.
           Bath]
 gi|53756625|gb|AAU90916.1| DNA polymerase III, beta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 366

 Score =  184 bits (466), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 113/387 (29%), Positives = 208/387 (53%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R D+L  L     +IER+ T+P+  +VL++   G +E+  +  E+++       
Sbjct: 1   MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDME 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TV A  L DI R L +G +++F  + E    V++  G S F L + P   +P+
Sbjct: 61  GKESGRFTVPARKLMDICRLLPEGGELAFDVKPE---RVSLQCGKSRFILGALPAENYPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  +    F+  + +L+  +E+T FAMA +++RYYLNG+   I +  ++  AVA+DGHR
Sbjct: 118 FEHGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQGRIR--AVASDGHR 175

Query: 181 LAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA+ E  VD +  +A+   II+PRK V E+ R+L+  + S  V +S + + +   + S +
Sbjct: 176 LALFEDAVDGMPDVAR--QIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFA 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           V+L++G +P+Y+ VIP +  + + V+   LR A+ RV+++S+ + + V L +    + + 
Sbjct: 234 VKLVEGRYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLR 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+  +A + +    +     + FN  YLL+ I+ ++S     D V      +N S  
Sbjct: 294 AQNPEHEEAEDEVPADVSGEAFAVGFNASYLLDAINAVAS-----DAVRMSFTDANGSCL 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I       ++  D++    +++MPMR+
Sbjct: 349 I-------EDLSDSRYR--FIVMPMRL 366


>gi|73667428|ref|YP_303444.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake]
 gi|72394569|gb|AAZ68846.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake]
          Length = 375

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 122/385 (31%), Positives = 206/385 (53%), Gaps = 24/385 (6%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V +  +L+ L +   ++E++++I V   V ++A D  + + ++  +I I  +I A ++  
Sbjct: 11  VSKDKLLQALSYINSVVEKRHSIVVLSCVRIEAKDHQINLTSTDLDISIIASISAHINEN 70

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
           G + VSA LLYDIV+KL +  +I F   K+  L  E     G + F+L      +FP  +
Sbjct: 71  GVVVVSAQLLYDIVKKLPNDIEIKFVIGKDGRLVIEC----GRTEFFLPVVDIEKFPIIE 126

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
             E    F L  S L NL  +T FA++ EE R+ LNG++ H    D  LC  ATDGHRL+
Sbjct: 127 NNELQNKFTLQVSELVNLFGKTKFAISVEESRFNLNGVYVH--TADNILCCAATDGHRLS 184

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A++     +     IIVP+K V EIL+I+S  S +  + VSLS+ +I    +   +  +
Sbjct: 185 LAKLSKSQNMLSNFGIIVPKKTVNEILKIVSHGSNNDLISVSLSDRKICFEYQEYILISK 244

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG FP+Y  +IP S++K + +    L  A+DRVS++   +++ +KL    +KL ++  
Sbjct: 245 VIDGTFPDYNAIIPKSHNKSVLIESEVLSNAIDRVSVVVFDKVKVIKLRFVDNKLILSAA 304

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + D G A E + V Y+   M I  N +YL+E +        V  + +     + +SV ++
Sbjct: 305 SSDQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCVKGKCILSFYDAGTSVLMQ 358

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    ++N  +  Y++MPMRI
Sbjct: 359 --------EQENIDDFTYIIMPMRI 375


>gi|153875362|ref|ZP_02003200.1| DNA polymerase III, beta chain [Beggiatoa sp. PS]
 gi|152068174|gb|EDN66800.1| DNA polymerase III, beta chain [Beggiatoa sp. PS]
          Length = 375

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 120/394 (30%), Positives = 216/394 (54%), Gaps = 28/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R ++L  L     ++E++ T+P+  + L+   D  L   A+  E+EI  ++P S
Sbjct: 1   MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60

Query: 61  VDVCGS-----ITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSF 113
            D  G+      T+ A   +DI R L D   A+I    E+E    + +  G S F LQ+ 
Sbjct: 61  SDNLGTDHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDETSQAI-VKAGKSKFKLQTL 119

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  +FP+  E +    F ++   LK+L+ +T F +A  ++RYYL G+   I+  D K+  
Sbjct: 120 PADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEIS--DGKISL 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232
           + TDGHR+AVA+ D   +  +   +I+PRKAV E+ ++L+  +++SV+VS  ++ I   +
Sbjct: 178 IGTDGHRMAVAQHDFEGE--ENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKL 235

Query: 233 -ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +SL M  +LIDG FP++  VIP   +K +      L+QA+ R SI+S+ + + ++ +L+
Sbjct: 236 SDSLIMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLT 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + L ++  N    +A E + V Y    +++ FN  Y+L+ I+ IS+  V   ++ F +D
Sbjct: 296 ENLLTISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKTV---QLAF-VD 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++S + +   ++DSK          +++MPMR+
Sbjct: 352 QNSSCLIMEEDNEDSK----------FIVMPMRL 375


>gi|188590797|ref|YP_001795397.1| DNA polymerase III subunit beta [Cupriavidus taiwanensis LMG 19424]
 gi|170937691|emb|CAP62675.1| DNA polymerase III, beta-subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 371

 Score =  183 bits (465), Expect = 3e-44,   Method: Compositional matrix adjust.
 Identities = 121/393 (30%), Positives = 203/393 (51%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT        
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59

Query: 63  VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG      + TV+A  L DI+R + DG       +  +     +  G S F LQ+    
Sbjct: 60  -CGVGNDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   +  E  K+ AVA
Sbjct: 115 EFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVV--EGKKVMAVA 172

Query: 176 TDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V++    A +     +I+PRK + E+ R+L   D  V V L+ +++    
Sbjct: 173 TDGHRLAYCGVELENEAAGVGSRQEVIIPRKTILELQRLLEDNDDPVTVQLAANQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ +     ++V   L  
Sbjct: 293 HMLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKT-----EQVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   D D         N  YV+MPMRI
Sbjct: 348 SNSSALITVPDDD---------NFKYVVMPMRI 371


>gi|319945019|ref|ZP_08019281.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319741589|gb|EFV94014.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 384

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 122/403 (30%), Positives = 207/403 (51%), Gaps = 42/403 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASV 61
           I   R  +L+ L     IIE+++T P+  +VL++     +    +  EI++ T A   + 
Sbjct: 4   IHAPRDAVLKPLQTVAGIIEKRHTQPILANVLIRQQGEAVTFTGTDMEIQVRTQASIGAG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPS 120
               + TVSA  L DI+R L D   ++     EL G ++N+    S F LQ+ P  +FP 
Sbjct: 64  SGTTATTVSAKKLIDILRALPD-TDVTI----ELNGNKLNLKTTRSRFALQTLPSEDFPV 118

Query: 121 TKE------------------EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162
            K                    +      L+   L++L++  HFAMA ++IR+YLNG+  
Sbjct: 119 MKAGATDQAGPGSGSAGDGSTADLRADVTLSQKKLRHLLQMVHFAMAQQDIRFYLNGLLL 178

Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222
            ++   ++  AVAT+GHRLA  E D+    A     I+PRK+V E+LR+L   D  V++ 
Sbjct: 179 VLSPAGMR--AVATEGHRLAFCE-DVEVHAAGQADAILPRKSVLELLRLLGDSDEPVRME 235

Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
           +  +++ L    +    +L++G+FP+YQ VIP    K + +    L QA+ R SI+S+ +
Sbjct: 236 IIGTQVRLRFGDIEFISKLLEGKFPDYQRVIPKGYQKVIELERETLAQALQRASILSNEK 295

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            + V+L L+  +L +   N +  +A E +++ Y   P+DI FN  YLL+++  + +D V 
Sbjct: 296 FRGVRLGLAPGRLGIQSSNTEQEEASEEIDIDYGGAPLDIGFNVSYLLDVLGTLKTDRVT 355

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + F  D+++S++     D+  +          YVLMPMRI
Sbjct: 356 ---MAFG-DATSSALLTLPGDESFR----------YVLMPMRI 384


>gi|262277741|ref|ZP_06055534.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114]
 gi|262224844|gb|EEY75303.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114]
          Length = 369

 Score =  183 bits (464), Expect = 4e-44,   Method: Compositional matrix adjust.
 Identities = 114/389 (29%), Positives = 210/389 (53%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R  +L+ L H   ++E+KNT+P+  +VL++A+DG L++ A+  +I IT  +   
Sbjct: 1   MEFKIDRDVLLKSLAHVQGVVEKKNTLPILGNVLIEAHDGFLKLTATDLDIIITEKLTCQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
               GS T +A ++YDIVRKL+ G+ +    KEN     + +  G S+F L      EFP
Sbjct: 61  TIKEGSTTTTAQVIYDIVRKLKTGSSLHLSLKEN---NRLKLISGKSDFNLTCISPDEFP 117

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
                 +E+Y+   E+ S     ++ +T F+++ +E R+YLNG++    + + KL AVAT
Sbjct: 118 ILEDNMDEQYL---EIPSFEFLKIINKTKFSISNDETRHYLNGVYLDKKDGENKLIAVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRL+ +  +I        S+I+P+K V E+L I+     ++K+  ++S+I    + + 
Sbjct: 175 DGHRLSKSATEIKGA-DNFQSVILPKKTVFELLTIIDEDSINLKILSTKSKIKFLYKDIV 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  ++IDG+FP+Y+ VIP       + N      A+DR+  +SS R   +K+SL    + 
Sbjct: 234 LISKVIDGKFPDYEKVIPKDERIAAKSNVEEFISALDRLKSLSSDRKGVIKISLDKGLMK 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
             +++   G  IE +   Y    ++I FN  YL+++ + + S      ++V  L  + S 
Sbjct: 294 FLINDAISGDGIEEVQTQYQGEHLEIGFNSTYLIDVANVLES-----KDIVLMLKDATSP 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++          ++   + Y++MPMR+
Sbjct: 349 IQVKD---------ESDPLSTYIVMPMRV 368


>gi|254251051|ref|ZP_04944369.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158]
 gi|124893660|gb|EAY67540.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158]
          Length = 368

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 204/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + + 
Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++    ++    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368


>gi|154706526|ref|YP_001423441.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111]
 gi|154355812|gb|ABS77274.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111]
          Length = 369

 Score =  183 bits (464), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 118/387 (30%), Positives = 202/387 (52%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R  +L+ L     ++ERK T+P+  +VLL      L I  +  E+E+ G     
Sbjct: 1   MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +   S  +T+    L DI R L D A I  +++ E   ++ +  G S F L + P  +F
Sbjct: 61  KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E      L  S  ++L+ RTHFAMA +++RYYLNG+         KL A+ATDG
Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +         II+PRK + E+LR+L   ++   + +  + I ++    + +
Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FP+ + VIP   DK+  ++   L+QA+ R +I+ + + + V   L    L + 
Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVCFELRQGLLRIL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+   A E +N+ Y    +DI FN  Y+L+I++ ++S  +    + F   +++SSV 
Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNSGNI---RLTF--STADSSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I        N  +N  ++ +V+MPMR+
Sbjct: 351 I--------NEVENPSDSAFVVMPMRL 369


>gi|91781386|ref|YP_556592.1| DNA polymerase III subunit beta [Burkholderia xenovorans LB400]
 gi|187922037|ref|YP_001893679.1| DNA polymerase III subunit beta [Burkholderia phytofirmans PsJN]
 gi|296157626|ref|ZP_06840461.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1]
 gi|91685340|gb|ABE28540.1| DNA polymerase III, beta subunit [Burkholderia xenovorans LB400]
 gi|187713231|gb|ACD14455.1| DNA polymerase III, beta subunit [Burkholderia phytofirmans PsJN]
 gi|295892398|gb|EFG72181.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1]
          Length = 367

 Score =  182 bits (463), Expect = 5e-44,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 212/387 (54%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDSVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + ++Y  +  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I     +   +I+PRK + E+ R+L   D ++K+ ++++++      + + 
Sbjct: 176 HRLAFSSMKIEGSFQRQ-EVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y+   +DI FN  YLL+++ N+     VD   V   D+S+S++ 
Sbjct: 295 STNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK----VDTLQVSLGDASSSALI 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++ + K          YV+MPMRI
Sbjct: 351 TIPENDEFK----------YVVMPMRI 367


>gi|222053119|ref|YP_002535481.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32]
 gi|221562408|gb|ACM18380.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32]
          Length = 372

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 113/390 (28%), Positives = 215/390 (55%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ +    + L     I+E++NT+P+  + L++A++GLL I A+  E+ +  + P +
Sbjct: 1   MEFSISKETFTKALQKIQGIVEKRNTMPILSNALIEASNGLLHITATDLEVGMKSSYPVT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G ITV+A  +Y+I+++L D  +I+F  KEN+    + I  G ++F +      EFP
Sbjct: 61  IAKEGKITVAAKKIYEIIKELSD-EEITFSTKENDW---IEIHCGKAHFNIVGLSPDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
              +        L+++ L  ++E+T +A+ T+E ++ LNGIF     E+ +  +  VATD
Sbjct: 117 YFPKVNDNIFVNLSNNFLSEMIEKTSYAICTDESKFNLNGIFIKAASEEGRNVIRMVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           GHRL+V   +    I+   S  +I P+K + E+ +I   +   + +   ++   +  ++ 
Sbjct: 177 GHRLSVTNKEFEGAISNELSKGVIFPKKGIYELKKIAEEESGDIMMGFMDNSAVIKKDNT 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            + +RLIDGEFP+Y  VIP +NDK++ V+   L  ++ R++I+SS + + +KL + S  +
Sbjct: 237 VIVMRLIDGEFPDYTKVIPANNDKKVTVSREALLHSLRRMAILSSEKFKGIKLDVRSGSI 296

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  NP++G A E   V Y+  P+ + FN +YL++++  +      DD+V   L    S
Sbjct: 297 EISSSNPELGDAREEQEVLYDGTPLSVRFNARYLIDVLTVLR-----DDQVELDLRDELS 351

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + ++   KD         +   V+MPMR+
Sbjct: 352 PIIMKPIAKD---------DFMSVIMPMRL 372


>gi|126451494|ref|YP_001064387.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1106a]
 gi|242316207|ref|ZP_04815223.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b]
 gi|126225136|gb|ABN88676.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106a]
 gi|242139446|gb|EES25848.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b]
          Length = 367

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 204/387 (52%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +   L AVATDG
Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--SLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + + 
Sbjct: 176 HRLAFSSMKIEGSFGRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367


>gi|255020210|ref|ZP_05292279.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970352|gb|EET27845.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 365

 Score =  182 bits (463), Expect = 6e-44,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 201/387 (51%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  +L LL     + +R+   P+  H+L+ A    L   A+  EI++   IPA 
Sbjct: 1   MKIRVERDTLLPLLASMVSVADRRPIQPILSHLLVTAESDSLRCVATDLEIQLLAHIPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS  + A  LYDI R L + + +   ++ E    + +  G + F+LQS P  +FP 
Sbjct: 61  VEQAGSCAIPARKLYDICRSLPESSTLDILRDKE---RIALRCGSARFHLQSLPAEQFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  ++ ++S + + + L++ +     AMA  + R++LNG+   + E +L+   VATDGHR
Sbjct: 118 SSNDDTLFSGQCSGTTLRDALSIAATAMAQNDARFFLNGVLLEVAEHELR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA   +   A  A++PS   I+PRKAV E+ R+L  +D  +++ L  + I L  + +   
Sbjct: 176 LARMTLPF-AHAAELPSYQGILPRKAVLELGRLLDEQD--IELRLGHNAIVLVNDRMQFR 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LID  +P+Y+ VIP  + +  +V+   L+QA+ +++++SS +  A  L   +  L + 
Sbjct: 233 CKLIDARYPDYRRVIPLGHPERAQVDRLALKQALTQINVLSSDKNPACVLKFQTTSLSLR 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A   + V Y    ++I FN  YL +     S+    + E+  +L  + SSV 
Sbjct: 293 SRNEEQEEAEVEIPVQYGGAGLEIAFNSHYLAD-----STQIFTESEIAMQLKDNGSSVL 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 D         N  Y++MP+R+
Sbjct: 348 FTPLKGD---------NPLYIVMPIRL 365


>gi|226225408|ref|YP_002759514.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226088599|dbj|BAH37044.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 370

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R  + E L      +  K T+PV  ++L++  D  +   A+  +I ++  + A 
Sbjct: 1   MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVSAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G+IT+ A  L +I R+L     +IS   E      V +  G S F L   P  EFP
Sbjct: 61  VETPGAITIPAKKLGEIARELPPSPVKISASGEQR----VTLECGRSKFKLLGLPRDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     +  S+ + S  L+ L+  T FA++ EE R  LNG+ + + EE +++  VAT+GH
Sbjct: 117 TFPSVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREERMRM--VATNGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  E+ + A  A    +IVP KA+ +I R+  +++   ++ ++    HL   S   SV
Sbjct: 175 RLAKMELPVEASSAPPGDLIVPPKALEQIRRLFPAEE---ELEIARGDNHLGFRSPFTSV 231

Query: 240 --RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RL++G +PNY+ VIP  ND+    +   L  A+ R+S+++S +   +K+S +S  L  
Sbjct: 232 FTRLVEGPYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKF 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V  PD+G+A + + + Y    +DI FN  YLLEI+  + +++V    + F+     +++
Sbjct: 292 SVTTPDLGEASDELPINYTGDQLDIGFNATYLLEILRFMPTEQV---RLTFKAPERAATI 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              G D  +K           ++MP+R+
Sbjct: 349 EPEGWDDPAKY--------LCLVMPLRL 368


>gi|325528072|gb|EGD05284.1| DNA polymerase III subunit beta [Burkholderia sp. TJI49]
          Length = 368

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 111/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + + 
Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368


>gi|91785915|ref|YP_546867.1| DNA polymerase III subunit beta [Polaromonas sp. JS666]
 gi|91695140|gb|ABE41969.1| DNA polymerase III, beta subunit [Polaromonas sp. JS666]
          Length = 368

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 117/383 (30%), Positives = 202/383 (52%), Gaps = 32/383 (8%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---- 65
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I      S D+ G    
Sbjct: 11  VLSVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIR----TSADLDGDAGN 66

Query: 66  -SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
            + TV A  L DI+R +     +S        +++ +  G S F LQ+ P  +FP  +E 
Sbjct: 67  FTTTVGARKLIDILRSMPSDQTVSL---ESAQSKLILKGGKSRFTLQTLPAEDFPLVQEA 123

Query: 125 -EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
             +  SF +   VLK L+ +  FAMA  +IRYYLNGI F    E  +L  VATDGHRLA 
Sbjct: 124 ANFGPSFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAF 181

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
           +   +  ++ K   +I+PRK V E+ R+LS K+ ++++  + ++   + E +    +L++
Sbjct: 182 SSATLDVEVPKQ-EVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVE 240

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +N +
Sbjct: 241 GKFPDYNRVIPKNHKNIITLGRVPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASNNAE 300

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++ + N+       D V   L  SNSS  +   D
Sbjct: 301 QEEAVDELDIDYGGDAIEIGFNVTYLIDALANMEQ-----DMVKIELADSNSSALLTIPD 355

Query: 364 KDSKNNKDNKVNAF-YVLMPMRI 385
                       AF YV+MPMRI
Sbjct: 356 D----------AAFKYVVMPMRI 368


>gi|167560989|ref|ZP_02353905.1| DNA polymerase III subunit beta [Burkholderia oklahomensis EO147]
 gi|167568253|ref|ZP_02361127.1| DNA polymerase III subunit beta [Burkholderia oklahomensis C6786]
          Length = 367

 Score =  182 bits (462), Expect = 8e-44,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 204/387 (52%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLTLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +   L AVATDG
Sbjct: 118 TVAQAKDFGASLSVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--SLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + + 
Sbjct: 176 HRLAFSSMKIEGAFPRQ-EVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKAHKNSFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITVPENDEFK---------YVVMPMRI 367


>gi|261400580|ref|ZP_05986705.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970]
 gi|269209656|gb|EEZ76111.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970]
          Length = 367

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 119/389 (30%), Positives = 209/389 (53%), Gaps = 31/389 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  + P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPE--- 60

Query: 63  VCGS----ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            CG+    IT +A    DI+R L  GA +S  + +N L     +  G S F LQ+ P  +
Sbjct: 61  -CGAADFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPADD 115

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP     E+   +FEL     K ++ +  ++MA ++IRYYLNG+   +    L+L  VAT
Sbjct: 116 FPQINIGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA +   I A + +   +I+PRK V E+ ++L++    ++V L + ++       +
Sbjct: 174 DGHRLAYSACAIGADLPRA-ELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  ++IDG+FP++  VIP  NDK   ++   L  A++R +I+++ +I+  +L L    L 
Sbjct: 233 IVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLS 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +  +A E + + Y    ++  FN  YL++++ NI +D   D ++ F  D++  +
Sbjct: 293 VVCSNNEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHTD---DMQLAFG-DANRPT 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +F      D+ N K       YV+MPMRI
Sbjct: 349 LFTV---PDNPNFK-------YVVMPMRI 367


>gi|78064660|ref|YP_367429.1| DNA polymerase III subunit beta [Burkholderia sp. 383]
 gi|115350058|ref|YP_771897.1| DNA polymerase III subunit beta [Burkholderia ambifaria AMMD]
 gi|170697755|ref|ZP_02888842.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10]
 gi|172059069|ref|YP_001806721.1| DNA polymerase III subunit beta [Burkholderia ambifaria MC40-6]
 gi|77965405|gb|ABB06785.1| DNA polymerase III, beta subunit [Burkholderia sp. 383]
 gi|115280046|gb|ABI85563.1| DNA polymerase III, beta subunit [Burkholderia ambifaria AMMD]
 gi|170137370|gb|EDT05611.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10]
 gi|171991586|gb|ACB62505.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MC40-6]
          Length = 368

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 208/387 (53%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + + 
Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+  D V     V   D+S+S++ 
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKVDTV----QVSLGDASSSALI 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++++ K          YV+MPMRI
Sbjct: 352 TVPENEEFK----------YVVMPMRI 368


>gi|107024099|ref|YP_622426.1| DNA polymerase III subunit beta [Burkholderia cenocepacia AU 1054]
 gi|116688026|ref|YP_833649.1| DNA polymerase III subunit beta [Burkholderia cenocepacia HI2424]
 gi|170731358|ref|YP_001763305.1| DNA polymerase III subunit beta [Burkholderia cenocepacia MC0-3]
 gi|206558824|ref|YP_002229584.1| DNA polymerase III subunit beta [Burkholderia cenocepacia J2315]
 gi|105894288|gb|ABF77453.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia AU 1054]
 gi|116646115|gb|ABK06756.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia HI2424]
 gi|169814600|gb|ACA89183.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia MC0-3]
 gi|198034861|emb|CAR50733.1| DNA polymerase III, beta chain [Burkholderia cenocepacia J2315]
          Length = 368

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQIATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + + 
Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368


>gi|171316344|ref|ZP_02905564.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171098473|gb|EDT43275.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 368

 Score =  182 bits (461), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 110/387 (28%), Positives = 203/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + + 
Sbjct: 176 HRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368


>gi|189423084|ref|YP_001950261.1| DNA polymerase III subunit beta [Geobacter lovleyi SZ]
 gi|189419343|gb|ACD93741.1| DNA polymerase III, beta subunit [Geobacter lovleyi SZ]
          Length = 372

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 211/390 (54%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R   L+ L     I+E++ ++P+  ++L++A    LEI A+  E+ + G  PA 
Sbjct: 1   MNFKIDRDTFLKALQKVQGIVEKRTSMPILSNILIEAQGDNLEIIATDLEVGLKGNYPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G ITV A  LY+IV++L +  +I+F  KEN+    V I+ G   F +   P  EFP
Sbjct: 61  VEKDGRITVGAKKLYEIVKELPN-QEITFSTKENDW---VEITCGKVRFNIVGLPSDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC--AVATD 177
           +    +     EL +++L+ ++E+T +A+  +E +Y LNGIF  + + +   C   VATD
Sbjct: 117 AVATVKDEQLLELEAALLRKMIEKTSYAICNDETKYNLNGIFTRVEQSEKGQCLKMVATD 176

Query: 178 GHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           GHRL++A       A    +  +I+P+K + EI +I    D  ++    +S   +     
Sbjct: 177 GHRLSIASGPFSGTANPELLKGVILPKKGIFEIKKITDEGDGLLQFGFVDSSAVIKKGDT 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           ++ +RL+DGEFP+Y  VIP +N++ ++     L  AV R++I+SS + + + L +  + +
Sbjct: 237 TLIMRLVDGEFPDYTRVIPAANEQIVKAPREELIHAVRRMAILSSEKFKGIMLEIEGNAV 296

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  NP++G A+E ++V Y+  P  + FN +YLL+++    S  V+   + F+ + S S
Sbjct: 297 KISSSNPELGDAMEELDVSYDGNPFSVRFNARYLLDVLMVCESQHVL---MKFKNELSPS 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V             D+      V+MPMR+
Sbjct: 354 IV-----------TPDSDDELLAVIMPMRL 372


>gi|330814958|ref|YP_004358663.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3]
 gi|327367351|gb|AEA58707.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3]
          Length = 368

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 205/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+      +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGEQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I         +IVPRK + E+ R+L   D +VK+ +++++       + + 
Sbjct: 176 HRLAYSSMKIEGGAFPRQEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+  D +   EV   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKVDNI---EV--SLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITVPENDEFK---------YVVMPMRI 368


>gi|167589704|ref|ZP_02382092.1| DNA polymerase III subunit beta [Burkholderia ubonensis Bu]
          Length = 368

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 111/386 (28%), Positives = 202/386 (52%), Gaps = 24/386 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT      V 
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRADFGVG 63

Query: 62  -DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP+
Sbjct: 64  NDQVAT-TVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFPT 118

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDGH
Sbjct: 119 VAQAKDFGASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA + + I         +IVPRK + E+ R+L   D +V + +++++       + +  
Sbjct: 177 RLAFSSMKIEGGAFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +  
Sbjct: 237 KLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMS 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS  I
Sbjct: 297 TNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSALI 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D            YV+MPMRI
Sbjct: 352 TVPENDEFK---------YVVMPMRI 368


>gi|313669120|ref|YP_004049404.1| DNA polymerase III, beta subunit [Neisseria lactamica ST-640]
 gi|309379507|emb|CBX21873.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006582|emb|CBN88047.1| putative DNA polymerase III, beta subunit [Neisseria lactamica
           020-06]
          Length = 367

 Score =  181 bits (460), Expect = 1e-43,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 210/389 (53%), Gaps = 31/389 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  + P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPE--- 60

Query: 63  VCGS----ITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
            CG+    IT +A    DI+R L  GA +S  + +N L     +  G S F LQ+ P  +
Sbjct: 61  -CGAADFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPADD 115

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP     E+   +FEL     K ++ +  ++MA ++IRYYLNG+   +    L+L  VAT
Sbjct: 116 FPQINIGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA +   I A + +   +I+PRK V E+ ++L++    ++V L + ++       +
Sbjct: 174 DGHRLAYSACAIDADLPRA-ELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  ++IDG+FP++  VIP  NDK   ++   L  A++R +I+++ +I+  +L L    L 
Sbjct: 233 IVSKVIDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLS 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +  +A E + + Y    ++  FN  YL++++ NI +D++   ++ F  D++  +
Sbjct: 293 VVCSNNEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHTDDM---QLAFG-DANRPT 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +F      D+ N K       YV+MPMRI
Sbjct: 349 LFTV---PDNPNFK-------YVVMPMRI 367


>gi|113866033|ref|YP_724522.1| DNA polymerase III subunit beta [Ralstonia eutropha H16]
 gi|113524809|emb|CAJ91154.1| DNA polymerase III beta subunit [Ralstonia eutropha H16]
          Length = 371

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 120/393 (30%), Positives = 204/393 (51%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT        
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59

Query: 63  VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG      + TV+A  L DI+R + DG       +  +     +  G S F LQ+    
Sbjct: 60  -CGVGSDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   +  E  K+ AVA
Sbjct: 115 EFPTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVV--EGKKVMAVA 172

Query: 176 TDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V++  +   +     +I+PRK + E+ R+L   D  V+V L+ +++    
Sbjct: 173 TDGHRLAYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ S     ++V   L  
Sbjct: 293 HMLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   + D         N  YV+MPMRI
Sbjct: 348 SNSSALITVPEDD---------NFKYVVMPMRI 371


>gi|121596426|ref|YP_988322.1| DNA polymerase III subunit beta [Acidovorax sp. JS42]
 gi|120608506|gb|ABM44246.1| DNA polymerase III, beta subunit [Acidovorax sp. JS42]
          Length = 368

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 202/378 (53%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VLL+     +++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           V A  L DI++ +     +S  + N+  +++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  VGARKLIDILKTMPSDQTVSL-ESNQ--SKLILKGGKSRFTLQTLPAEDFPLVQEAASFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +   VLK+L+ +  FAMA ++IRYYLNGI F    E   L  VATDGHRLA A   
Sbjct: 128 PAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHRLAFASAQ 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+LS  D ++++  + ++   +   +    +L++G+FP
Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +N +  +A
Sbjct: 245 DYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASNNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
           ++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS  +   D    
Sbjct: 305 VDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMTIPD---- 355

Query: 368 NNKDNKVNAFYVLMPMRI 385
            N+  K    YV+MPMRI
Sbjct: 356 -NEHFK----YVVMPMRI 368


>gi|308095428|ref|ZP_07663276.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
 gi|308087823|gb|EFO37518.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
          Length = 287

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 92/284 (32%), Positives = 169/284 (59%), Gaps = 7/284 (2%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV-CGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++L++  + +L + A+  E+E+   +    D   GSITV +    DI R L 
Sbjct: 4   RPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEAGSITVPSRKFLDICRGLP 63

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           D A I+F  E   G  V +  G S F L + P ++FP+ ++ +      L+ + L+ L++
Sbjct: 64  DDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLID 120

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
           +T F+MA +++RYYLNG+ F I+   L+  +VATDGHR+AV++  + A  A+   IIVPR
Sbjct: 121 KTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGHRMAVSQTQLGADFAQK-QIIVPR 177

Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262
           K V E+++++ + +  V + +  S +   + +   + +L+DG FP+Y+ V+P   +K L 
Sbjct: 178 KGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLI 237

Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
            +C  LRQA  R +I+S+ + + V+++L+  ++ +T +NP+  K
Sbjct: 238 ASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQKK 281


>gi|118578451|ref|YP_899701.1| DNA polymerase III subunit beta [Pelobacter propionicus DSM 2379]
 gi|118501161|gb|ABK97643.1| DNA polymerase III, beta subunit [Pelobacter propionicus DSM 2379]
          Length = 373

 Score =  181 bits (459), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 118/391 (30%), Positives = 213/391 (54%), Gaps = 24/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +++   L+ L     I+E++ ++P+  +VLL+A +  L + A+  E+ +    PA 
Sbjct: 1   MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGMKCIYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G ITV A  +Y+IV++L +  QISF  K+N+    V I  G  +F +      EFP
Sbjct: 61  ILSPGRITVGAKKIYEIVKELPN-QQISFSAKDNDW---VEIRCGKVHFNIVGLSAEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF--FHINEEDLKLCA-VAT 176
              E      FE+ S++LK ++E+T +A+  ++ +Y LNG+F    IN++D++L   VAT
Sbjct: 117 YFPEVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVAT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           DGHRL++A         +  S  +I+P+K V E+ +I      ++     ++   +    
Sbjct: 177 DGHRLSIASCPFKGNAGQELSKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRGD 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             M +RL+DGEFP+Y  VIP SND+ + +NC +   +V R++I+SS + + + L +S   
Sbjct: 237 SYMVMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISESS 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  NP++G A+E ++V Y   P  + FN +YLL+++    ++ V   E+ F+ + + 
Sbjct: 297 IRISSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTETESV---EMKFKDELAP 353

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S +             D   +   V+MPMR+
Sbjct: 354 SIIL-----------PDKSDSFLAVIMPMRL 373


>gi|222109227|ref|YP_002551491.1| DNA polymerase iii subunit beta [Acidovorax ebreus TPSY]
 gi|221728671|gb|ACM31491.1| DNA polymerase III, beta subunit [Acidovorax ebreus TPSY]
          Length = 368

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 115/378 (30%), Positives = 202/378 (53%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VLL+     +++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           V A  L DI++ +     +S  + N+  +++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  VGARKLIDILKTMPADQTVSL-ESNQ--SKLILKGGKSRFTLQTLPAEDFPLVQEAASFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +   VLK+L+ +  FAMA ++IRYYLNGI F    E   L  VATDGHRLA A   
Sbjct: 128 PAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHRLAFASAQ 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+LS  D ++++  + ++   +   +    +L++G+FP
Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +N +  +A
Sbjct: 245 DYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASNNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
           ++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS  +   D    
Sbjct: 305 VDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMTIPD---- 355

Query: 368 NNKDNKVNAFYVLMPMRI 385
            N+  K    YV+MPMRI
Sbjct: 356 -NEHFK----YVVMPMRI 368


>gi|161523182|ref|YP_001578194.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|189348957|ref|YP_001944585.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|221201813|ref|ZP_03574850.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M]
 gi|221207681|ref|ZP_03580689.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2]
 gi|221214573|ref|ZP_03587543.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1]
 gi|56798247|dbj|BAD82890.1| DnaN [Burkholderia multivorans]
 gi|160340611|gb|ABX13697.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189332979|dbj|BAG42049.1| DNA polymerase III, beta chain [Burkholderia multivorans ATCC
           17616]
 gi|221165463|gb|EED97939.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1]
 gi|221172527|gb|EEE04966.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2]
 gi|221178233|gb|EEE10643.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M]
          Length = 368

 Score =  181 bits (458), Expect = 2e-43,   Method: Compositional matrix adjust.
 Identities = 112/388 (28%), Positives = 203/388 (52%), Gaps = 28/388 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT      V 
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADFGV- 62

Query: 63  VCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             GS     TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EF
Sbjct: 63  --GSDQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKIDGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++    ++    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDEFK---------YVVMPMRI 368


>gi|94308947|ref|YP_582157.1| DNA polymerase III subunit beta [Cupriavidus metallidurans CH34]
 gi|93352799|gb|ABF06888.1| DNA polymerase III, beta subunit [Cupriavidus metallidurans CH34]
          Length = 371

 Score =  181 bits (458), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 119/393 (30%), Positives = 204/393 (51%), Gaps = 35/393 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT        
Sbjct: 4   VKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAE---- 59

Query: 63  VCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            CG      + TV+A  L DI+R + DG       +  +     +  G S F LQ+    
Sbjct: 60  -CGVGSDSVATTVAARKLLDILRAMPDGDVALSLNDKRM----TVQSGKSRFALQTLAAE 114

Query: 117 EFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFP+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   ++ +  K+ AVA
Sbjct: 115 EFPTVAEAAEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVA 172

Query: 176 TDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           TDGHRLA   V++      +     +I+PRK + E+ R+L   D  V+V L+ +++    
Sbjct: 173 TDGHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDTDDPVQVQLAANQVKFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            ++ +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +
Sbjct: 233 ANIELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDT 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ S     ++V   L  
Sbjct: 293 HVLKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGD 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SNSS  I   + D         N  YV+MPMRI
Sbjct: 348 SNSSALITVPEDD---------NFKYVVMPMRI 371


>gi|88658616|ref|YP_507795.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88600073|gb|ABD45542.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 369

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 123/387 (31%), Positives = 210/387 (54%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V +  +L+ L +   I+E++++I V   V ++A D  +++ ++  +I I  +I A 
Sbjct: 1   MNFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+V G + VSA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP 
Sbjct: 61  VNVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  E    F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHR
Sbjct: 119 IENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMS 238
           L++ ++     +     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   + 
Sbjct: 177 LSLTKLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILI 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y ++IP S+DK + +    L  A+DRVS++   +++ +KL   S+KL ++
Sbjct: 237 SKVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + D G A E + V Y+   M I  N +YL+E +        +  + +     + +SV 
Sbjct: 297 AASSDQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCIKGKCLLSFYDAGTSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+         ++N  +  Y++MPMRI
Sbjct: 351 IQ--------EEENIDDFTYIIMPMRI 369


>gi|186474775|ref|YP_001856245.1| DNA polymerase III subunit beta [Burkholderia phymatum STM815]
 gi|184191234|gb|ACC69199.1| DNA polymerase III, beta subunit [Burkholderia phymatum STM815]
          Length = 367

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 207/387 (53%), Gaps = 27/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT    A   
Sbjct: 4   VKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTR--ADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGESVATTVAARKLLDILRAMPDG-QVTLTLNDK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQAKDFGANLAVPQKTFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I    A+   +I+PRK + E+ R+L   D  +K+ ++ +++      + + 
Sbjct: 176 HRLAYSSMKIEGSFARQ-EVIIPRKTILELQRLLEDIDDVLKIDIAPTQVKFTFGGVELV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP S+     +    L++++ R +I++S + + V+  +   +L + 
Sbjct: 235 SKLVEGKFPDFQRVIPKSHKNTFVIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKIM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+  D +   E+   L  ++SS  
Sbjct: 295 STNADQEEAQEELEIPYQGDSIDIGFNVTYLLDVLANLKVDML---EI--SLGDASSSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 350 ITIPENDEFK---------YVVMPMRI 367


>gi|257455165|ref|ZP_05620403.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60]
 gi|257447498|gb|EEV22503.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  180 bits (457), Expect = 3e-43,   Method: Compositional matrix adjust.
 Identities = 121/410 (29%), Positives = 211/410 (51%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  +L+ +    +  ++++ + +  ++ L   D  L + AS  E+E+   +   
Sbjct: 1   MQLVISRDLLLQAINLISKAADKRHNMVILGNMKLALTDSQLVMVASDLELELQATLNLP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              C   G ITV A+   DIV+ L DG  +S    N+   +  I  G S F L + P  +
Sbjct: 61  ASACKQPGEITVPANKFKDIVKLLPDGLPVSISVGND--NQCLIVCGSSRFKLSTLPAQD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E E V   +L    L +L+++THFAMA +++RYYL G+ F + E   +L  V+TD
Sbjct: 119 FPLLGEPEQVTPIQLGREDLVDLLDKTHFAMAVQDVRYYLTGMLFEVKER--QLATVSTD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSESRIHL 230
           GHRLA+A   I    +   + I+PRKAV        E+ R+L ++D+ + +++    + +
Sbjct: 177 GHRLALARTVIACDDSVALAAILPRKAVLELQRLLAELKRMLPNQDNKITLNVGREFLQV 236

Query: 231 --------------NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
                         N   ++ + RLIDG+FP+Y+ V+P   +K  R++   L   + RV+
Sbjct: 237 LLPFGEVDSTGQLKNAIMVAFTARLIDGKFPDYRRVMPSLTNKIARISQEQLANVLRRVA 296

Query: 277 IMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           I+S+ + + V    S D  L +   N +  +A E + V Y   P++I FN  YLL++++ 
Sbjct: 297 ILSNEKSRGVIFDFSGDNNLMVRASNAEQDEASEQLEVKYQGEPLEISFNVAYLLDVLN- 355

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                V+  E+ F +  +N+SV ++ +  DSK+         +V+MPMRI
Sbjct: 356 -----VLQGEIDFHMSQANASVLVQ-QVNDSKHE--------FVVMPMRI 391


>gi|153839072|ref|ZP_01991739.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810]
 gi|149747455|gb|EDM58409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810]
          Length = 268

 Score =  180 bits (456), Expect = 4e-43,   Method: Compositional matrix adjust.
 Identities = 89/285 (31%), Positives = 170/285 (59%), Gaps = 17/285 (5%)

Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160
           +  G S F L + P ++FP+ ++ +      L+ + L+ L+++T F+MA +++RYYLNG+
Sbjct: 1   VRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGM 60

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
            F I+   L+  +VATDGHR+AV++  + A  A+   IIVPRK V E+++++ + +  V 
Sbjct: 61  LFEIDGTTLR--SVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVV 117

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + +  S +   + +   + +L+DG FP+Y+ V+P   +K L  +C  LRQA  R +I+S+
Sbjct: 118 LQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSN 177

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            + + V+++L+  ++ +T +NP+  +A E ++V +   P++I FN  Y+L++++ +    
Sbjct: 178 EKFRGVRVNLAGSEMRITANNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRC-- 235

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++V   +  +N+S  I   D DS         A YV+MP+R+
Sbjct: 236 ---EKVQVSMSDANASALIENADDDS---------AMYVVMPIRL 268


>gi|303256369|ref|ZP_07342383.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47]
 gi|331001505|ref|ZP_08325123.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|302859860|gb|EFL82937.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47]
 gi|329568234|gb|EGG50051.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 391

 Score =  179 bits (455), Expect = 5e-43,   Method: Compositional matrix adjust.
 Identities = 116/384 (30%), Positives = 202/384 (52%), Gaps = 20/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPASV 61
           I  ++ +I + +     +++RK  +PV  ++L       + + A+  +++I T A     
Sbjct: 27  INSKKENIFKPIQAVSGVVQRKQPLPVLSNILFVQKGKQVTLVANDLDLQILTVAEIGEE 86

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +   S T+SA  L DI+  L D   +SF K+   G  V +S G S F LQ+    EFP  
Sbjct: 87  NSEMSTTISARKLTDILATLPDTNPLSFSKK---GDHVVLSSGKSKFELQTISAEEFPVI 143

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E +  ++F ++    K L+    FA A   +RY+LNG++  I  E+ K+  VATDGHRL
Sbjct: 144 TEVDLEHAFTMSCLRFKYLLNMVSFACAVNNVRYFLNGVY--ICAENNKVRGVATDGHRL 201

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A+ +V+      K    I+PRK V E++R++      ++V +SE +I      + +  +L
Sbjct: 202 ALCDVEAEKTADKKLDAILPRKTVKELVRLIPDSQDPIEVYISERQIKFKFVGIEILSKL 261

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           ++G +P+YQ VIP  N+KE RV    L  ++ RV+ +++ ++  V+ +L+   L +  +N
Sbjct: 262 VEGRYPDYQRVIPEHNEKEFRVGRQELLSSLQRVATLTADKLMGVRWNLTPGHLNVAANN 321

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            DM +A + ++V Y+  P++I FN  YL+E+++ +      +D V   L    +   IR 
Sbjct: 322 ADMEEAEDEISVEYSGSPIEIGFNVAYLIEVLNVLK-----NDSVRISLGEQKNPALIRM 376

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D D         N  +V+MPM+I
Sbjct: 377 PDND---------NFKFVVMPMKI 391


>gi|68171925|ref|ZP_00545242.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998647|gb|EAM85383.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
          Length = 375

 Score =  179 bits (455), Expect = 6e-43,   Method: Compositional matrix adjust.
 Identities = 123/383 (32%), Positives = 209/383 (54%), Gaps = 20/383 (5%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V +  +L+ L +   I+E++++I V   V ++A D  +++ ++  +I I  +I A V+V 
Sbjct: 11  VSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHVNVN 70

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G + VSA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP  +  
Sbjct: 71  GVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENN 128

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E    F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHRL++ 
Sbjct: 129 ELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLT 186

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           ++     I     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   +  ++I
Sbjct: 187 KLSQSQNILSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVI 246

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y ++IP S+DK + +    L  A+DRVS++   +++ +KL   S+KL ++  + 
Sbjct: 247 DGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSAASS 306

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           D G A E + V Y+   M I  N +YL+E +        +  + +     + +SV I+  
Sbjct: 307 DQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCIKGKCLLSFYDAGTSVLIQ-- 358

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
                  ++N  +  Y++MPMRI
Sbjct: 359 ------EEENIDDFTYIIMPMRI 375


>gi|319760740|ref|YP_004124677.1| DNA polymerase iii, beta subunit [Alicycliphilus denitrificans BC]
 gi|330822655|ref|YP_004385958.1| DNA polymerase III subunit beta [Alicycliphilus denitrificans K601]
 gi|317115301|gb|ADU97789.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans BC]
 gi|329308027|gb|AEB82442.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans
           K601]
          Length = 368

 Score =  179 bits (454), Expect = 7e-43,   Method: Compositional matrix adjust.
 Identities = 116/378 (30%), Positives = 197/378 (52%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L+   S  EI+I        D    + T
Sbjct: 11  VLAVLQSVSGIVERRHTLPILANVLIRKTGNALQFTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           V A  L DI++ +     +S   EN   T++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  VGARKLIDILKTMPADQTVSL--ENS-QTKLILKGGKSRFTLQTLPAEDFPLVQEAASFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +    LK L+ +  FAMA ++IRYYLNGI F    + L L  VATDGHRLA A  +
Sbjct: 128 PAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGILFVAEGKTLSL--VATDGHRLAFASSE 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+LS  D ++++  + ++       +    +L++G+FP
Sbjct: 186 LDMEVPKQ-EVILPRKTVLELQRLLSDADGAIEMRFANNQAKFGFGGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +   N +  +A
Sbjct: 245 DYNRVIPRNHHNVITLGRAPLLASLQRTAIMTSEKFKGVRLNIEPGSLRVASSNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
           ++ +++ Y    ++I FN  YL++++ N+       D V   L   NSSV     D    
Sbjct: 305 VDELDIDYGGDSIEIGFNVTYLIDVLANMGQ-----DMVRMELADGNSSVVFGIPD---- 355

Query: 368 NNKDNKVNAFYVLMPMRI 385
            N   K    YV+MPMRI
Sbjct: 356 -NTHFK----YVVMPMRI 368


>gi|301165373|emb|CBW24944.1| putative DNA polymerase III, beta chain [Bacteriovorax marinus SJ]
          Length = 371

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 195/345 (56%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +   D+   L     +++++N+ P+  + L++  +  L I A+  E+     I A 
Sbjct: 1   MKIRLHTEDLKSALNKVLSVVDKRNSRPILTYTLIETANDQLNISATDLEVSSKVVIKAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   V+A  ++DI+++L  G +I    +++  T + ++ GD ++ L  +   +FP 
Sbjct: 61  VDNPGKFCVNAKNIFDILKELP-GTEIELSLDDQSNT-LKLNCGDIHYSLLIYKADDFPH 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + V  F+L+S  L N++ +T +A+  +E R YLNGI+    E D KL AVATDGHR
Sbjct: 119 LVFNQDVNKFKLSSEQLANIINKTSYAVLNDETRLYLNGIYLQ--EIDSKLRAVATDGHR 176

Query: 181 LAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES-LS 236
           L++ E D+     +  +  II+PRK + EI +I  +  DS +++S+ ++ +++N ++   
Sbjct: 177 LSLLETDLSENNNETLINGIIIPRKGIFEIKKISETYPDSEIELSVDDTFLYVNAKNEYF 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +SVRLI  E+P YQ VIP      +  +  +   A+ R+ IMS+ +   V+L LS   + 
Sbjct: 237 LSVRLIAREYPKYQAVIPNKTTYTMTTDRNSFFDAIRRIKIMSNEKSNGVRLKLSDQTMT 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +T ++P +G A+E+M V YN   M+I FN KYL++ + +    E+
Sbjct: 297 LTANHPSLGDAMETMPVDYNGKEMEIGFNAKYLIDTLHSFDEGEI 341


>gi|119896294|ref|YP_931507.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119668707|emb|CAL92620.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 369

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 114/387 (29%), Positives = 202/387 (52%), Gaps = 25/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L  L     I+E+++T+P+  +VL++     L + A+  EI+I       + 
Sbjct: 4   LNTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKRGDQLTLLATDIEIQIRTTTAGHIG 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               SITV A  L DI+R L D   I    E++    + +  G S F LQ+ P +++P  
Sbjct: 64  GEDSSITVGARKLQDILRALSDSVDIVLTLEDK---RLTVKAGKSRFQLQTLPAADYPRM 120

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +     F +     K  + +  ++MA ++IRYYLNG+    +  +L++  VATDGHR
Sbjct: 121 NLPDGDAVRFSVPQRAFKRQLAQVSYSMAQQDIRYYLNGLLLIADGSELRM--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D+   +      I+PRK V E+ R L+  D  +++ L+ ++      S+ +  +
Sbjct: 179 LAYAAGDLAVPVQARTEAILPRKTVLELARQLADTDDPLEIILAGNQAVFRFGSIELVTK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ VIP ++ + +  +   L  ++ R +I+++ + + V++ L    L +   
Sbjct: 239 LIDGKFPDYERVIPQNHPRMVTFDRQPLLASLQRAAILTNEKFRGVRMVLGEGALKIISS 298

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y++ P+DI FN  YLL++++N+SS     ++V +R +  NSS  + 
Sbjct: 299 NTEQEEAQEELEIDYHDTPLDIGFNVTYLLDVLNNLSS-----EQVEWRFNDGNSSALVT 353

Query: 361 --GKDKDSKNNKDNKVNAFYVLMPMRI 385
             G DK             YV+MPMRI
Sbjct: 354 LPGNDKFK-----------YVVMPMRI 369


>gi|67772421|gb|AAY79411.1| DNA polymerase beta subunit [Ehrlichia chaffeensis]
          Length = 375

 Score =  179 bits (453), Expect = 8e-43,   Method: Compositional matrix adjust.
 Identities = 122/383 (31%), Positives = 209/383 (54%), Gaps = 20/383 (5%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V +  +L+ L +   I+E++++I V   V ++A D  +++ ++  +I I  +I A V+V 
Sbjct: 11  VSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHVNVN 70

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G + VSA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP  +  
Sbjct: 71  GVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENN 128

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E    F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHRL++ 
Sbjct: 129 ELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLT 186

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           ++     +     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   +  ++I
Sbjct: 187 KLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVI 246

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y ++IP S+DK + +    L  A+DRVS++   +++ +KL   S+KL ++  + 
Sbjct: 247 DGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSAASS 306

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           D G A E + V Y+   M I  N +YL+E +        +  + +     + +SV I+  
Sbjct: 307 DQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCIKGKCLLSFYDAGTSVLIQ-- 358

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
                  ++N  +  Y++MPMRI
Sbjct: 359 ------EEENIDDFTYIIMPMRI 375


>gi|254455931|ref|ZP_05069360.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082933|gb|EDZ60359.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 370

 Score =  178 bits (452), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 216/388 (55%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V + D+ + L +   +IE+++T+P+  ++LL  ++  L I A+  ++     +  +
Sbjct: 1   MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNILLDVSNSKLTITATDLDLIFVHQL-NN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ++V   G  T ++ ++YDIVRK   G +I+    +   +++ +    S F L     +EF
Sbjct: 60  IEVLEEGKTTTTSSIMYDIVRKFSSGKKINLSLTD--ISKLQVESEKSIFNLNCISATEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176
           P T E      F + S  L  L+ +  F+++ +E R+YL+GI+FH  E + K  L AVAT
Sbjct: 118 PLTDENFNENEFVIKSKQLLKLLNKCKFSVSNDETRHYLSGIYFHQTEVEDKNYLTAVAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HR++++++ +  +I   P II+P+K + ++  +L S D  VKVS  +S+I   + +  
Sbjct: 178 DSHRMSISKIRLGQKIDFEP-IILPKKTIFQLCSLLDSYDGDVKVSNLKSKIKFELNNSI 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +LIDG+FPNY  VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L 
Sbjct: 237 LISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLNSVDRVASVSLDKKDGVKFNLSKDILD 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++V+N + G   E++NV ++   ++I FN +YL+++   +  + V   E+ F  D+ + +
Sbjct: 297 LSVNNTNSGDGKETLNVKFDH-DLEISFNSRYLIDVASQLDGERV---EIFFN-DTGSPA 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     D DS           +V+MPM+
Sbjct: 352 LIKDPGDFDS----------IFVVMPMK 369


>gi|54295985|ref|YP_122354.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris]
 gi|53749770|emb|CAH11150.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris]
          Length = 367

 Score =  178 bits (451), Expect = 1e-42,   Method: Compositional matrix adjust.
 Identities = 121/390 (31%), Positives = 205/390 (52%), Gaps = 31/390 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +   S
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GSITV A    DI+R L + A  S   +  L   V I    S F L + P   +PS
Sbjct: 63  NNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+    +     + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177

Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237
           +A++      +AQ AK+   ++P+K V E+LR+L+   D  V ++  +S I L       
Sbjct: 178 MAISRYSCNNIAQ-AKL---LIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LI+  FP Y   IP   DK + ++CT L++A+ R+ I++  + +AV L L   +L +
Sbjct: 234 LSKLIEARFPPYTKAIPREQDKYIVIDCTTLKRALSRIVILAHEKSKAVLLHLQLGQLTL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN--S 355
             +N +  +AIE+++       + I  N  YLL+++ + S  ++       RL  SN  S
Sbjct: 294 IANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLSHFSEGQI-------RLSMSNTES 346

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S+ I     D         N  Y++MPM+I
Sbjct: 347 SILIESLVND---------NYQYIIMPMKI 367


>gi|213052697|ref|ZP_03345575.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 274

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 97/280 (34%), Positives = 158/280 (56%), Gaps = 7/280 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 274


>gi|33598883|ref|NP_886526.1| DNA polymerase III subunit beta [Bordetella parapertussis 12822]
 gi|33575013|emb|CAE39679.1| DNA polymerase iii, beta chain [Bordetella parapertussis]
          Length = 371

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 210/391 (53%), Gaps = 33/391 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     G  
Sbjct: 6   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           P +     S TV+A  L DI++ L D  ++   K      ++++    S F LQ+   SE
Sbjct: 66  PEN----ESTTVAARKLLDILKALPDTGEV---KLGLASNKLSVQSAKSRFALQTLAASE 118

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP+  + E++  S  +   +L++L    HFAMA ++IRYYLNG+      E  ++ AVAT
Sbjct: 119 FPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVAT 176

Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           DGHRLA    E D    IA+   +IVPRK V E+ R+L   D  V + ++  +I      
Sbjct: 177 DGHRLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+  +
Sbjct: 234 VELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQ 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  N +  +A E +++ Y+  P+D+ FN  YLL+++ NI ++ V   +     D++ 
Sbjct: 294 MKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENV---QWSVMPDANA 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S++     D+  K          YV+MPMRI
Sbjct: 351 SALITLSDDEQFK----------YVVMPMRI 371


>gi|71891808|ref|YP_277537.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795914|gb|AAZ40665.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 367

 Score =  177 bits (450), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 207/387 (53%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-GAIPA 59
           M   ++R  + + L     I+  +  +P+  HVLL+ ND  L I A+  EIEIT   I  
Sbjct: 1   MNFVIDRKLLYQSLQKVVGILSGRPRMPILTHVLLEVNDNCLCITATDLEIEITVRVILQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS+ V     ++I R L + ++IS   +++   ++ I  G S FYL +F   +FP
Sbjct: 61  DKYPIGSVIVPGRKFFEICRSLSESSKISIVSKDK---KMIICSGCSKFYLSTFSSLDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++        ++ ++LK ++E T F+M  +++RY LNGI F   E  L++  VATDGH
Sbjct: 118 KLEKWGNNLKLVISQAILKKMIELTQFSMGHQDVRYCLNGILFETKEHILRI--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  E+ +   +    SII PRK V EILR+L+ K+  V +  + + + +  E+ + + 
Sbjct: 176 RLASCEITMDLLLPNQSSII-PRKGVIEILRLLNVKEKLVNIQTNSNNLRMETENYTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LID  FPN  +V    +   L V C  L+QA+ R +I+++ +++ V+ +L +++L +T 
Sbjct: 235 KLIDAVFPNCHDVFIKRSKNVLEVECGILKQALKRAAILANEKLRIVRFTLITNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSVF 358
            N +   + E ++V Y+   + I FN  YL++++      +V+D + + F L    SSV 
Sbjct: 295 HNFEHEASEEILDVLYSGKSIKISFNVDYLIDVL------QVMDTQFLRFYLTDEISSVQ 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +K           A Y++MP+RI
Sbjct: 349 IESTEKCH--------GATYIVMPIRI 367


>gi|33591699|ref|NP_879343.1| DNA polymerase III subunit beta [Bordetella pertussis Tohama I]
 gi|33571342|emb|CAE44819.1| DNA polymerase iii, beta chain [Bordetella pertussis Tohama I]
 gi|332381118|gb|AEE65965.1| DNA polymerase III subunit beta [Bordetella pertussis CS]
          Length = 369

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 210/391 (53%), Gaps = 33/391 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     G  
Sbjct: 4   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 63

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           P +     S TV+A  L DI++ L D  ++   K      ++++    S F LQ+   SE
Sbjct: 64  PEN----ESTTVAARKLLDILKALPDTGEV---KLGLASNKLSVQSAKSRFALQTLAASE 116

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP+  + E++  S  +   +L++L    HFAMA ++IRYYLNG+      E  ++ AVAT
Sbjct: 117 FPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVAT 174

Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           DGHRLA    E D    IA+   +IVPRK V E+ R+L   D  V + ++  +I      
Sbjct: 175 DGHRLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGD 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+  +
Sbjct: 232 VELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  N +  +A E +++ Y+  P+D+ FN  YLL+++ NI ++ V   +     D++ 
Sbjct: 292 MKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENV---QWSVMPDANA 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S++     D+  K          YV+MPMRI
Sbjct: 349 SALITLPDDEQFK----------YVVMPMRI 369


>gi|160895452|ref|YP_001561034.1| DNA polymerase III subunit beta [Delftia acidovorans SPH-1]
 gi|160361036|gb|ABX32649.1| DNA polymerase III, beta subunit [Delftia acidovorans SPH-1]
          Length = 372

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 197/382 (51%), Gaps = 26/382 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127
           V A  L DI++ +     +S   +     ++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  VGARKLIDILKTMPGDQTVSLETQQ---AKMVLKGGKSRFTLQTLPAEDFPLVQEAAAFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            SF +   VLK+L+ +  FAMA ++IRYYLNGI F    E  +L  VATDGHRLA A   
Sbjct: 128 PSFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFV--AEGKQLSLVATDGHRLAFASSQ 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243
           +  ++ K   +I+PRK V E+ R+LS         +++  + ++       +    +L++
Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGMEFVTKLVE 244

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +N +
Sbjct: 245 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLTVEPGTLRVASNNAE 304

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++ + N+S D +  D     L   NSS  +   +
Sbjct: 305 QEEAMDELDIDYGGDTIEIGFNVTYLIDALSNMSQDMIRID-----LQDGNSSALLTIPE 359

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            DS           YV+MPMRI
Sbjct: 360 NDSFK---------YVVMPMRI 372


>gi|121607000|ref|YP_984329.1| DNA polymerase III subunit beta [Polaromonas naphthalenivorans CJ2]
 gi|120595969|gb|ABM39408.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 368

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/379 (30%), Positives = 201/379 (53%), Gaps = 26/379 (6%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SITV 69
           L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + TV
Sbjct: 12  LGVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTTAELDGDEGDFTTTV 71

Query: 70  SAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
            A  L D++R +     +S    +N+L     +  G S F LQ+ P  +FP  +E   + 
Sbjct: 72  GARKLIDVLRSMPSDQTVSLESAQNKL----ILKGGKSRFTLQTLPAEDFPLVQEAASFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +   VLK L+ +  FAMA  +IRYYLNGI F    E  +L  VATDGHRLA +   
Sbjct: 128 PVFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFSSAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+LS K+ ++++  + ++   + E +    +L++G+FP
Sbjct: 186 LDVEVPKQ-EVILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +N +  +A
Sbjct: 245 DYNRVIPKNHKNIITLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASNNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
           ++ +++ Y+   ++I FN  YL++ ++N++      D V   L  SNSS  +   D    
Sbjct: 305 VDELDIDYDGDAIEIGFNVTYLIDALNNMNQ-----DMVKIELADSNSSALLTIPDN--- 356

Query: 368 NNKDNKVNAF-YVLMPMRI 385
                   AF YV+MPMRI
Sbjct: 357 -------AAFKYVVMPMRI 368


>gi|33603962|ref|NP_891522.1| DNA polymerase III subunit beta [Bordetella bronchiseptica RB50]
 gi|33568938|emb|CAE35352.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica RB50]
          Length = 371

 Score =  177 bits (449), Expect = 2e-42,   Method: Compositional matrix adjust.
 Identities = 115/391 (29%), Positives = 210/391 (53%), Gaps = 33/391 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----GAI 57
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     G  
Sbjct: 6   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           P +     S TV+A  L DI++ L D  ++   K      ++++    S F LQ+   SE
Sbjct: 66  PEN----ESTTVAARKLLDILKALPDTGEV---KLGLASNKLSVQSAKSRFALQTLAASE 118

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP+  + E++  S  +   +L++L    HFAMA ++IRYYLNG+      E  ++ AVAT
Sbjct: 119 FPTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVAT 176

Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           DGHRLA    E D    IA+   +IVPRK V E+ R+L   D  V + ++  +I      
Sbjct: 177 DGHRLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+  +
Sbjct: 234 VELVSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQ 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  N +  +A E +++ Y+  P+D+ FN  YLL+++ NI ++ V   +     D++ 
Sbjct: 294 MKISSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENV---QWSVMPDANA 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S++     D+  K          YV+MPMRI
Sbjct: 351 SALITLPDDEQFK----------YVVMPMRI 371


>gi|171913560|ref|ZP_02929030.1| DNA polymerase III subunit beta [Verrucomicrobium spinosum DSM
           4136]
          Length = 365

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 115/389 (29%), Positives = 198/389 (50%), Gaps = 30/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   L  L     ++  + T+P+  +VL++A +G L+   +  ++ I+G + A 
Sbjct: 1   MKFSISKEAFLTALQQVQHVVSTRTTLPILSNVLIKAGNGQLQFVTTDLDVGISGTVAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116
           V+  G+ T+ A  L  I+R+L  D  +++         E N++H   G S F +      
Sbjct: 61  VEEAGATTLPARKLVSIIRELPSDEVEVTV-------DERNVAHIRSGPSFFKVMGLAAD 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP          F+L   VLK+ + +T +A++T+E RY LNGI     E  L +  VAT
Sbjct: 114 EFPPLPTFSDAREFKLEQRVLKDCLRKTSYAISTDETRYVLNGILCSFKENMLTM--VAT 171

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG RLA+ E ++    +    II+P KAV EI R+L   +  V + +   +I  ++    
Sbjct: 172 DGRRLAMVEQELEFPQSNEVDIIIPTKAVNEIQRLLED-EGEVTLKVGSGQIAFDLGDFF 230

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +LI+G +PNY+ VIP    + + ++   L + + R S++ S +  +VKL L+ D L 
Sbjct: 231 LASKLIEGNYPNYRQVIPGEARERIALDREPLLRTLGRTSLLLSDKSNSVKLHLTKDNLE 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  + PD+G+A ES+ + Y    M I FN ++ +  + N+ SDE                
Sbjct: 291 VVANAPDVGEARESVAINYKGAEMTIAFNPEFFMAPLRNLVSDE---------------- 334

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V++   D+ S     +  N  YVLMPMR+
Sbjct: 335 VYLHLIDEISPGVLRSGTNFLYVLMPMRV 363


>gi|264676138|ref|YP_003276044.1| DNA polymerase III subunit beta [Comamonas testosteroni CNB-2]
 gi|299530929|ref|ZP_07044343.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44]
 gi|262206650|gb|ACY30748.1| DNA polymerase III, beta subunit [Comamonas testosteroni CNB-2]
 gi|298721150|gb|EFI62093.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44]
          Length = 373

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 197/382 (51%), Gaps = 25/382 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDAGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127
           + A  L DI++ +     +S   +    +++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  IGARKLIDILKTMPGDQTVSLETQQ---SKMILKGGKSRFTLQTLPAEDFPLVQESAAFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHRLA A   
Sbjct: 128 PAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAWASAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243
           +  ++     +I+PRK V E+ R+LS         +++  + ++       +    +L++
Sbjct: 186 LDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGMEFVTKLVE 245

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+LS+    L +  +N +
Sbjct: 246 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLRVASNNAE 305

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++++ N+S D V  D     L   NSS  +   +
Sbjct: 306 QEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMSQDMVKID-----LQDGNSSALVTIPE 360

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            +S           YV+MPMRI
Sbjct: 361 NESFK---------YVVMPMRI 373


>gi|261854632|ref|YP_003261915.1| DNA polymerase III subunit beta [Halothiobacillus neapolitanus c2]
 gi|261835101|gb|ACX94868.1| DNA polymerase III, beta subunit [Halothiobacillus neapolitanus c2]
          Length = 370

 Score =  177 bits (449), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 126/391 (32%), Positives = 204/391 (52%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V+R      +      +E++ T+ +  ++LL+  DG L + A+  EI++  ++   
Sbjct: 1   MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVDVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ TV+A  L DIV+     A+I+   + +   E++I  G   F L S     FP 
Sbjct: 61  MQAPGATTVNARKLADIVKSASQDAKIAL-TQTDGWLEIDIGTG--VFRLASIEAGSFPQ 117

Query: 121 -TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            T +     +  +    L  L+++T F+MA +++RY+LNG+   +     ++ AVATDGH
Sbjct: 118 MTIDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPG--QMTAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSM 237
           RLA A +           +IVPRK V E+L+ L  +DS  +VSL+  +++I L I    +
Sbjct: 176 RLAYAHLSDERLTENNRQVIVPRKMVSEMLKALD-RDSDDEVSLAFRDNQIELLIGENYL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG++P+Y  V+P SN K L V+ T L+Q + R SI+S+ R       LS  +L +
Sbjct: 235 ISKLIDGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N +   + E+M+V Y+   + I FN  YLL I+  I S     +EV   L++  SSV
Sbjct: 295 ESSNAEHESSKETMSVGYDASDLKISFNISYLLNILAVIES-----EEVCMELEAPESSV 349

Query: 358 FIR---GKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+     D DSK          YVLMPM++
Sbjct: 350 LIKPVMPGDIDSK----------YVLMPMKL 370


>gi|221069746|ref|ZP_03545851.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1]
 gi|220714769|gb|EED70137.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1]
          Length = 373

 Score =  177 bits (448), Expect = 3e-42,   Method: Compositional matrix adjust.
 Identities = 111/382 (29%), Positives = 196/382 (51%), Gaps = 25/382 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDAGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127
           + A  L DI++ +     +S   +     ++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  IGARKLIDILKTMPGDQTVSLETQQ---AKMILKGGKSRFTLQTLPAEDFPLVQESAAFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHRLA A   
Sbjct: 128 PAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAWASAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243
           +  ++     +I+PRK V E+ R+LS         +++  + ++       +    +L++
Sbjct: 186 LDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGMEFVTKLVE 245

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+LS+    L +  +N +
Sbjct: 246 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLRVASNNAE 305

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++++ N+S D V  D     L   NSS  +   +
Sbjct: 306 QEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMSQDMVKID-----LQDGNSSALVTIPE 360

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            +S           YV+MPMRI
Sbjct: 361 NESFK---------YVVMPMRI 373


>gi|81251085|gb|ABB69885.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS18]
          Length = 369

 Score =  177 bits (448), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 127/387 (32%), Positives = 210/387 (54%), Gaps = 25/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   SVD
Sbjct: 4   IETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQDSVD 63

Query: 63  --VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
                S+TV+A  L DI+R L D AQ+     EN L  +     G S F LQ+ P  +FP
Sbjct: 64  NDEEHSVTVAAKKLQDILRALPDKAQVVLEMGENRLLAKA----GKSRFNLQTLPAEDFP 119

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E +E      +    LK+L+    +AMA ++IRYYLNG+   +  ED  L  VATDG
Sbjct: 120 KFPESKEAQGKVTVQQKELKHLLSMVQYAMAQQDIRYYLNGL--LLLLEDSYLKVVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A + + A   K   +I+PRK V E+ ++L+  D  + + + ++++     ++ + 
Sbjct: 178 HRLAFALMTLEAPQEK-KEVILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVVLV 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP    K+  +N   L Q + R SI+S+ + + V+L L++D L + 
Sbjct: 237 SKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLRIV 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y+   +DI FN  YLL++++N +S+ +      F   +S++ + 
Sbjct: 297 CSNSEQEEAQEELELQYDGEALDIGFNITYLLDVLNNTTSEAI---RCAFGDANSSALIT 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I G D           N  YV+MPMRI
Sbjct: 354 IPGND-----------NFKYVVMPMRI 369


>gi|322417547|ref|YP_004196770.1| DNA polymerase III subunit beta [Geobacter sp. M18]
 gi|320123934|gb|ADW11494.1| DNA polymerase III, beta subunit [Geobacter sp. M18]
          Length = 372

 Score =  176 bits (447), Expect = 4e-42,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 213/394 (54%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + +   ++ L     I+E++NT+P+  + LL+  +  L I A+  E+ +  + P  
Sbjct: 1   MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLYITATDLEVGMKSSYPTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
           V   G ITVSA  LY+IV+++ D   +   K+N+    V I+ G + F +      EFP 
Sbjct: 61  VIREGKITVSAKKLYEIVKEMPDEEILFSTKDNDW---VEITCGKARFNIVGLSSEEFPY 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVA 175
               KEE ++      + +L +++E+T +A+  +E +Y LNG+F    +E+    L  VA
Sbjct: 118 FPKVKEENFLV---FKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGGNVLKMVA 174

Query: 176 TDGHRLAVAEV----DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           TDGHRL+VA+     +I A+++K   II P+K + E+ +++  +D  + +   ++   + 
Sbjct: 175 TDGHRLSVAQKAITGNITAELSK--GIIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIK 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
             +  + +RLIDGEFP+Y  VIP +ND+ +++N      ++ R+SI+SS + + VK+ ++
Sbjct: 233 KGNTVVVMRLIDGEFPDYTKVIPVANDRIVQINRDKFLHSLKRMSILSSEKFKGVKIDVN 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + + ++  NP++G+A E + + Y+   +   FN KYL++++  +        EV  +L 
Sbjct: 293 PELVIISSSNPELGEAREEIEIDYDGNGISARFNAKYLIDVLSVMEQ-----REVELKLK 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S V ++  D +             V+MPMR+
Sbjct: 348 DELSPVIMKAADSEE---------FLAVIMPMRL 372


>gi|52840258|ref|YP_094057.1| DNA polymerase III beta chain [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627369|gb|AAU26110.1| DNA polymerase III beta chain [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|307608752|emb|CBW98134.1| DNA polymerase III, beta chain [Legionella pneumophila 130b]
          Length = 367

 Score =  176 bits (447), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 118/390 (30%), Positives = 203/390 (52%), Gaps = 31/390 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +   S
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GSITV A    DI+R L + A  S   +  L   V I    S F L + P   +PS
Sbjct: 63  KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+    +     + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177

Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237
           +A++      +AQ      +++P+K V E+LR+L+   D  V ++  +S I L       
Sbjct: 178 MAISRYSCNNIAQ----TKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LI+  FP Y   IP   DK + ++C +L++A+ R+ I++  + +AV L L   +L +
Sbjct: 234 LSKLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN--S 355
             +N +  +AIE+++       + I  N  YLL+++ + S  ++       RL  SN  S
Sbjct: 294 IANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFSEGQI-------RLSMSNTES 346

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S+ I     D         N  Y++MPM+I
Sbjct: 347 SILIESLVND---------NYQYIIMPMKI 367


>gi|332524902|ref|ZP_08401088.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2]
 gi|332108197|gb|EGJ09421.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2]
          Length = 369

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 115/382 (30%), Positives = 203/382 (53%), Gaps = 29/382 (7%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---- 65
           +LE L     I+ER++T+P+  +VLL+ N  ++E+  S  EI++      S ++ G    
Sbjct: 11  LLEALQSVAGIVERRHTLPILANVLLRKNGPVVELTTSDLEIQVR----TSAELGGDEGH 66

Query: 66  -SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
            + TV A  L DI+R L     ++    +    ++ ++ G S F LQS P  +FP   E 
Sbjct: 67  FATTVGARKLIDILRALPAEQTVTL---SSAQNKLTLAGGKSRFTLQSLPADDFPLVNEA 123

Query: 125 -EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            ++  +F +    L+ L+ + HF+MA  +IRYYLNGI F    + L L  VATDGHRLA+
Sbjct: 124 VDFGPTFSVPQKTLRQLINQVHFSMAVHDIRYYLNGILFIAEGKTLTL--VATDGHRLAL 181

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
           A+  +   +     +I+PRK V E+ R+L  +++ +++  + ++       L    +L++
Sbjct: 182 AQGTLETDVPNRQEVILPRKTVLELQRLLKDEETPIEMRFAGNQAKFAFSGLEFVTKLVE 241

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   L V    L  ++ R +I++S + + V+L+L    L +   N +
Sbjct: 242 GKFPDYNRVIPRNHKNALVVGRAALLGSLQRAAILTSEKFKGVRLNLEPGVLRIASSNAE 301

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A E + + Y    ++I FN  YL++++ N+   E+V  E+    D++ S++F   + 
Sbjct: 302 QEEAKEELEIDYAGDTIEIGFNVTYLIDVLANM-QQEMVKIELQ---DTNASALFTVPEQ 357

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
              K          YV+MPMRI
Sbjct: 358 TGFK----------YVVMPMRI 369


>gi|212659801|gb|ACJ36980.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 270

 Score =  176 bits (446), Expect = 5e-42,   Method: Compositional matrix adjust.
 Identities = 92/267 (34%), Positives = 154/267 (57%), Gaps = 5/267 (1%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ 
Sbjct: 8   LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIP 67

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
           A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E     
Sbjct: 68  ARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERI 124

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++  
Sbjct: 125 IIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQ 182

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                  II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+
Sbjct: 183 AKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYE 242

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSI 277
            VIP   D+E++V    LR A+ R +I
Sbjct: 243 GVIPIGADREVKVAREVLRDALQRAAI 269


>gi|326314825|ref|YP_004232497.1| DNA polymerase III subunit beta [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323371661|gb|ADX43930.1| DNA polymerase III, beta subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 372

 Score =  176 bits (446), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 114/382 (29%), Positives = 195/382 (51%), Gaps = 26/382 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127
           V A  L DI++ +     +S   +    +++ +  G S F LQS P  +FP  +E   + 
Sbjct: 71  VGARKLIDILKTMPADQTVSLESQQ---SKLVLKGGKSRFTLQSLPAEDFPLVQESAAFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHRLA A   
Sbjct: 128 PVFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAFASAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243
           +  ++ K   +I+PRK V E+ R+LS         +++  + ++       +    +L++
Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGMEFVTKLVE 244

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +N +
Sbjct: 245 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLRVASNNAE 304

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS  +   D
Sbjct: 305 QEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVKVD-----LSDGNSSALMTIPD 359

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            D         N  YV+MPMRI
Sbjct: 360 ND---------NFKYVVMPMRI 372


>gi|319760165|ref|YP_004124103.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038879|gb|ADV33429.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 369

 Score =  176 bits (445), Expect = 6e-42,   Method: Compositional matrix adjust.
 Identities = 129/387 (33%), Positives = 208/387 (53%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   VER  +  +L     ++  +  +P+  H+LL+ N+  L +  +  E+EI   +   
Sbjct: 1   MTFCVERQSLYPILQKIISVVSNRPRLPILKHILLEINNNCLILIVTNLEVEIIAHVFLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V  S+TVS   LY+I R L   A+I    EN    ++ ++ G S+F L + P S+FP
Sbjct: 61  KRYVFRSVTVSGIKLYEIFRNLSACAKIFIKLEN---NKLLVNSGCSSFVLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVL--KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           + +  +    F +  S L  K ++E T FAM   + R+YLNGIFF I  ED  +  VATD
Sbjct: 118 NVETLKVDCEFNVIISQLMFKKIIELTQFAMGYRDARHYLNGIFFEI--EDKVVRVVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA+ E+     ++   SII+PR+ + EILR+L+   + VK+ + ++RI + I++  +
Sbjct: 176 GHRLAMCEIT-ADTLSSSHSIIIPRQGIVEILRLLNYTKNLVKIKIYDNRICVKIDNYIV 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LID  FPNY+ V+  +      V+   L+QA+ RVSI+S+ +++ V  +L  D+L +
Sbjct: 235 HSKLIDSVFPNYKRVLTNNLKLFFEVDRIILKQALKRVSILSNEKLRVVHFNLMHDQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +N     + E + + Y+   + I FN  Y+L+II+ I S       + F L    SSV
Sbjct: 295 TANNFKQETSEEILEILYDNENIGISFNVDYILDIINVIDS-----KTLKFFLTDPVSSV 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I G  K  +        A YV+MP+R
Sbjct: 350 KIEGIPKFYE--------ATYVVMPVR 368


>gi|120608716|ref|YP_968394.1| DNA polymerase III subunit beta [Acidovorax citrulli AAC00-1]
 gi|120587180|gb|ABM30620.1| DNA polymerase III, beta subunit [Acidovorax citrulli AAC00-1]
          Length = 372

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 113/382 (29%), Positives = 196/382 (51%), Gaps = 26/382 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127
           V A  L DI++ +     +S   +    +++ +  G S F LQS P  +FP  +E   + 
Sbjct: 71  VGARKLIDILKTMPADQTVSLESQQ---SKLVLKGGKSRFTLQSLPAEDFPLVQESAAFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHRLA A   
Sbjct: 128 PAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHRLAFASAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243
           +  ++ K   +I+PRK V E+ R+LS         +++  + ++       +    +L++
Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGMEFVTKLVE 244

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +N +
Sbjct: 245 GKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLRVASNNAE 304

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS  +   +
Sbjct: 305 QEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVRVD-----LSDGNSSALMTIPE 359

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            D         N  YV+MPMRI
Sbjct: 360 ND---------NFKYVVMPMRI 372


>gi|254468927|ref|ZP_05082333.1| DNA polymerase III, beta subunit [beta proteobacterium KB13]
 gi|207087737|gb|EDZ65020.1| DNA polymerase III, beta subunit [beta proteobacterium KB13]
          Length = 316

 Score =  176 bits (445), Expect = 8e-42,   Method: Compositional matrix adjust.
 Identities = 107/330 (32%), Positives = 181/330 (54%), Gaps = 21/330 (6%)

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           I   ++    IT+SA  L+DI R L + +++ F + NE  + VN+  G S F LQ+ P  
Sbjct: 7   IDTKIETDFEITISARKLFDITRALPENSELDF-QINE--SRVNVKAGKSKFNLQTLPSK 63

Query: 117 EFPSTKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           ++P  K+ +    S +L+ + LK L+++  FAMA ++IRYYLNG+ F I  +  KL  V 
Sbjct: 64  DYPLLKKNDSESVSVKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQ--KLNIVG 121

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRL+     +     K   +I+PRK + E++++L   D  V++ +   ++      +
Sbjct: 122 TDGHRLSFTSTKLDDSYEK-KEVIIPRKTIMELIKLLDDSDEIVELEILNQQVTFKFGDI 180

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  ++IDG+FP+Y  VIP   +    ++   L  A+ R SI+S+ + + ++L LS + +
Sbjct: 181 FIITKVIDGKFPDYNRVIPVGYENGFLIDRQMLLNAMQRASILSNEKYRGIRLVLSENNM 240

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   N +  +A E + + YN+  +DI FN  YL+++++NI       D++ F    SNS
Sbjct: 241 QLITTNSEQEEAQEDIEILYNKEAIDIGFNVTYLIDVLNNIQF-----DQLSFTFKDSNS 295

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +        NN D K    YV+MPMRI
Sbjct: 296 SCLVT-----IPNNDDYK----YVVMPMRI 316


>gi|54292966|ref|YP_125381.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens]
 gi|53752798|emb|CAH14232.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens]
          Length = 367

 Score =  175 bits (444), Expect = 9e-42,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 201/388 (51%), Gaps = 27/388 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +   S
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GSITV A    DI+R L + A  S   +  L   V I    S F L + P   +PS
Sbjct: 63  KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+    +     + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A++         K   +++P+K V E+LR+L+   D  V ++  +S I L         
Sbjct: 178 MAISRYSCNNITQK--KLLIPKKGVQELLRLLNCINDEQVLLTAGKSHIKLITNQFVFLS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP   DK + ++C +L++A+ R+ I++  + +AV L L   +L +  
Sbjct: 236 KLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN--SSV 357
           +N +  +AIE+++       + I  N  YLL+++ + S  ++       RL  SN  SS+
Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFSEGQI-------RLSMSNTESSI 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I     D         N  Y++MPM+I
Sbjct: 349 LIESLIND---------NYQYIIMPMKI 367


>gi|212659819|gb|ACJ36984.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 264

 Score =  175 bits (444), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/269 (33%), Positives = 154/269 (57%), Gaps = 5/269 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           + L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT
Sbjct: 1   NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           + A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E   
Sbjct: 61  IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
              +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++
Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
                    II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+
Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           Y+ VIP   D+E++V    LR A+ R  +
Sbjct: 236 YEGVIPIGADREVKVAREVLRDALQRAQV 264


>gi|171056694|ref|YP_001789043.1| DNA polymerase III subunit beta [Leptothrix cholodnii SP-6]
 gi|170774139|gb|ACB32278.1| DNA polymerase III, beta subunit [Leptothrix cholodnii SP-6]
          Length = 381

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 117/394 (29%), Positives = 203/394 (51%), Gaps = 35/394 (8%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG- 65
           +  +L  L     I+ER++T+P+  +VL++ + G  E+  S  EI++  A     D    
Sbjct: 8   QEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGDESAF 67

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124
           S TV A  L DI+R L     ++         ++ +  G S F LQ+ P  +FP  +E  
Sbjct: 68  STTVGARKLIDILRMLPSDQIVTLTAAQ---NKLTLQGGKSRFTLQTLPADDFPLVQEAA 124

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           ++  +F +    LK+L+++ HFAMA  +IRYYLNGI F    + L L  VATDGHRLA+A
Sbjct: 125 DFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTL--VATDGHRLALA 182

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE------- 233
           +  + A+I K   +I+PRK V E+ R+L    +SK+++ +    E RI +          
Sbjct: 183 QATLEAEIPKQ-EVILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQAKFS 241

Query: 234 --SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
              +    +L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+++  
Sbjct: 242 FGGMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRVNFE 301

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   N +  +A E + + Y    ++I FN  YL++++ N++     +D V   L 
Sbjct: 302 PGTLRIASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANVN-----EDMVTLSLQ 356

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++SS  I   ++             YV+MPMRI
Sbjct: 357 DASSSALITVPERSGFK---------YVVMPMRI 381


>gi|89898824|ref|YP_521295.1| DNA polymerase III subunit beta [Rhodoferax ferrireducens T118]
 gi|89343561|gb|ABD67764.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
          Length = 367

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 109/377 (28%), Positives = 191/377 (50%), Gaps = 21/377 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D     TV
Sbjct: 11  VLSVLQSVAGIVERRHTLPILANVLIRKTGTSLQLTTSDLEIQIRTTAELDGDTGDFTTV 70

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYVY 128
            A  L DI+R +     +S         ++ +  G S F LQ+    +FP  +E   +  
Sbjct: 71  GARKLIDILRTMPADQTVSL---ESSAAKLILKGGKSRFTLQTMAAEDFPLVQEAASFGP 127

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
            F +    LK+L+ +  FAMA  +IRYYLNGI F    E  +L  VATDGHRLA A   +
Sbjct: 128 VFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGSQLSLVATDGHRLAFASATL 185

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
             ++ K   +I+PRK V E+ R+LS    ++++  + ++   + + +    +L++G+FP+
Sbjct: 186 DVEVPKQ-EVILPRKTVIELQRLLSDTQGAIEMQFANNQAKFSFDGMEFVTKLVEGKFPD 244

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI 308
           Y  VIP ++   + +  + L   + R +I++S + + V+L++    L +  +N +  +A+
Sbjct: 245 YNRVIPKNHQNSITLGRSALLATLQRTAILTSEKFKGVRLNIDPGTLRVASNNAEQEEAV 304

Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368
           + +++ Y    ++I FN  YL++ + N+S      D V   L   NSS      D  +  
Sbjct: 305 DELDIDYGGDSIEIGFNVTYLIDALANMSQ-----DMVRLELSDGNSSALFTIPDNATFK 359

Query: 369 NKDNKVNAFYVLMPMRI 385
                    YV+MPMRI
Sbjct: 360 ---------YVVMPMRI 367


>gi|301631933|ref|XP_002945046.1| PREDICTED: DNA polymerase III subunit beta-like [Xenopus (Silurana)
           tropicalis]
          Length = 554

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 197/378 (52%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  ++L++     L+   S  EI+I        DV   + T
Sbjct: 197 VLAVLQSVSGIVERRHTLPILANMLIRKTGNALQFTTSDQEIQIRTTAELGGDVGDFATT 256

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           V    L DI++ +     +S        +++ +  G S F LQ+    +FP  +E   + 
Sbjct: 257 VGVRKLIDILKTMPAEQMVSLESSQ---SKLILKGGKSRFTLQTLAAEDFPLVQESPAFG 313

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +   VLK L+ +  FAMA ++IRY+LNGI F    + L L  VATDGHRLA A  +
Sbjct: 314 PVFSVPQKVLKGLLNQVSFAMAVQDIRYFLNGILFVAEGKTLSL--VATDGHRLAFASSE 371

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+LS  D ++++  + ++       +    +L++G+FP
Sbjct: 372 LDVEVPKQ-GVILPRKTVLELQRLLSDADGAIEMQFANNQAKFCFGGMEFVTKLVEGKFP 430

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +IM+S + +AV+L++    L +   N +  +A
Sbjct: 431 DYHRVIPNNHHNSITLGRAPLLTSLQRTAIMTSEKFKAVRLNIEPGTLRVASTNAEQEEA 490

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
           ++ +++ Y    +++ FN  YLL+++ N+  + V  D     L  +NSS  +   + DS 
Sbjct: 491 VDELDIDYGGNSIEVVFNVTYLLDVLANMGQEMVKID-----LADNNSSALVTIPENDSF 545

Query: 368 NNKDNKVNAFYVLMPMRI 385
                     YV+MPMRI
Sbjct: 546 K---------YVVMPMRI 554


>gi|212659788|gb|ACJ36978.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 263

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 153/261 (58%), Gaps = 5/261 (1%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 3   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 62

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 63  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 119

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++         II
Sbjct: 120 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 177

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   D+
Sbjct: 178 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 237

Query: 260 ELRVNCTNLRQAVDRVSIMSS 280
           E++V    LR A+ R +I+S+
Sbjct: 238 EVKVAREVLRDALQRAAILSN 258


>gi|212659784|gb|ACJ36976.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 265

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 153/261 (58%), Gaps = 5/261 (1%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 4   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 64  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++         II
Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 178

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   D+
Sbjct: 179 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 238

Query: 260 ELRVNCTNLRQAVDRVSIMSS 280
           E++V    LR A+ R +I+S+
Sbjct: 239 EVKVAREVLRDALQRAAILSN 259


>gi|212659810|gb|ACJ36982.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 264

 Score =  175 bits (443), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 153/267 (57%), Gaps = 5/267 (1%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ 
Sbjct: 2   LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIP 61

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
           A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E     
Sbjct: 62  ARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERI 118

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++  
Sbjct: 119 IIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQ 176

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                  II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+
Sbjct: 177 AKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYE 236

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSI 277
            VIP   D+E++V    LR A+ R  +
Sbjct: 237 GVIPIGADREVKVAREVLRDALQRAQL 263


>gi|124265195|ref|YP_001019199.1| DNA polymerase III subunit beta [Methylibium petroleiphilum PM1]
 gi|124257970|gb|ABM92964.1| DNA polymerase III, beta subunit [Methylibium petroleiphilum PM1]
          Length = 368

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 194/378 (51%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
            L  L     I+ER++T+PV  +VL++     +E   S  EI++        D    S T
Sbjct: 11  FLGALQAVAGIVERRHTLPVLANVLMRKTGNAIEFTTSDLEIQVRTQAEFDGDAGNFSTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           V A  L DI+R L     ++    +    ++ ++ G S F LQ+ P  +FP  +E  ++ 
Sbjct: 71  VGARKLIDILRTLPADQNVTL---SSAQNKLTLTGGKSRFTLQTLPAEDFPLVQEAADFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
            +F +    LK L+ + HFAMA  +IRYYLNGI F    + L L  VATDGHRLA+A+  
Sbjct: 128 PAFSVPQKSLKALIAQVHFAMAVHDIRYYLNGILFVAEGKSLTL--VATDGHRLALAQAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+L  +D+++++  + ++       +    +L++G+FP
Sbjct: 186 LDVEMPKQ-EVILPRKTVLELQRLLKDEDTAIEMRFAGNQAKFAFSGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +I++S + + V+L+     L +   N +  +A
Sbjct: 245 DYNRVIPKNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRLNFDPGTLRIASSNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            E + + Y    ++I FN  YL++++ N+       + V   L  SNSS  +   ++   
Sbjct: 305 KEELEIDYGGDAIEIGFNVTYLMDVLANMG-----QEMVTLSLQDSNSSALVTVPEQGGF 359

Query: 368 NNKDNKVNAFYVLMPMRI 385
                     YV+MPMRI
Sbjct: 360 K---------YVVMPMRI 368


>gi|6606554|gb|AAF19206.1|AF213931_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  174 bits (442), Expect = 1e-41,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 217/385 (56%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R+I + +T+P+  ++L+  N+G++ + A   EIE+   I  S
Sbjct: 1   MKFNIINKIFTQHLKKVNRLISKNSTLPILENILITVNNGIISLTAKNLEIELISNIEIS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I    Q+ ++ S  K N    +++I   +SN+ L + P   FP
Sbjct: 61  KTHTPGSITVSGQKLLNIC---QNSSESSEIKINLNKDKMHIISDNSNYILTTLPSDNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F ++S +LK ++E+T F+M  +++RYYLNGI    N+    L AVATDG+
Sbjct: 118 NHNNFHHISEFFISSEILKKMIEKTQFSMGKQDVRYYLNGILLEKNKT--ALYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +A+  +   +  + S I+PR+ + E+ ++L+ K   + V + ++ I +NIE L  +V
Sbjct: 176 RLGIAKTFLNENVC-IFSAIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRINIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++V+    +  + +N   L+Q++ RV+++S      V++ ++++K  ++ 
Sbjct: 235 QLIEGEYPDYKSVLLRKKNHPIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVSS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N    KA +S  + Y    ++I  N  Y++E+++ I+S+ +     +F L+ SN+S+ I
Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSNNI----FIF-LNESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++ +S         + YV+M +R
Sbjct: 350 ESEEDNS---------SLYVIMLLR 365


>gi|212659799|gb|ACJ36979.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 263

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 91/267 (34%), Positives = 153/267 (57%), Gaps = 5/267 (1%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ 
Sbjct: 2   LKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIP 61

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
           A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E     
Sbjct: 62  ARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERI 118

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++  
Sbjct: 119 IIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQ 176

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                  II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+
Sbjct: 177 AKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYE 236

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSI 277
            VIP   D+E++V    LR A+ R  +
Sbjct: 237 GVIPIGADREVKVAREVLRDALQRAQL 263


>gi|313199779|ref|YP_004038437.1| DNA polymerase III subunit beta [Methylovorus sp. MP688]
 gi|312439095|gb|ADQ83201.1| DNA polymerase III, beta subunit [Methylovorus sp. MP688]
          Length = 341

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/361 (29%), Positives = 194/361 (53%), Gaps = 22/361 (6%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
           +P+  ++LL+A D  + + A+  E++I+ A+   V    S T+SA  L DI R L + A+
Sbjct: 1   MPILSNLLLEAKDEKIVLTATDLEMQISLALQTPVGGELSTTISAKKLLDICRSLPENAE 60

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPESEFP-STKEEEYVYSF-ELASSVLKNLVERT 144
           I+        + + +  G S F LQ+ P +++P  TK     Y+   +    LK L ++ 
Sbjct: 61  ITMATAE---SRIQVKTGKSRFNLQTLPAADYPVMTKATGTTYTVVTIDQKSLKRLFKQV 117

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FAMA ++IRYYLNG+ F +N    +L  V TDGHRL+    ++ AQ  +   +I+PRK 
Sbjct: 118 EFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDGHRLSFTSTEL-AQSYEKQELILPRKT 174

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           V E++++L   +  V + ++  +++ +   + +  ++IDG+FP+Y  VIP  +     V+
Sbjct: 175 VIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLISKVIDGKFPDYTRVIPVGHKNSFNVD 234

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
              +  A+ R SI+S+ + + +++ L SD L +   N +  +A E + + Y    +DI F
Sbjct: 235 RMTILLAMQRASILSNEKYRGIRMVLGSDSLRLISTNSEQEEAEEELEIAYAGDSLDIGF 294

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N  Y++++++N++      D V F    +NSS  +   D ++           YV+MPMR
Sbjct: 295 NVTYMIDVLNNVNC-----DSVTFSFADANSSCLVTVADDETYK---------YVVMPMR 340

Query: 385 I 385
           I
Sbjct: 341 I 341


>gi|163854306|ref|YP_001628604.1| DNA polymerase III subunit beta [Bordetella petrii DSM 12804]
 gi|163258034|emb|CAP40333.1| DNA polymerase III, beta chain [Bordetella petrii]
          Length = 369

 Score =  174 bits (442), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 110/385 (28%), Positives = 202/385 (52%), Gaps = 21/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT      V 
Sbjct: 4   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 63

Query: 63  VCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               S TV+A  L DI++ L D  ++     N    ++++    S F LQ+   SEFP+ 
Sbjct: 64  QDNESTTVAARKLLDILKALPDTGEVKLGLANN---KLSVQSAKSRFALQTLAASEFPTV 120

Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + E++  S  L    L++L+   HFAMA ++IRYYLNG+        ++  AVATDGHR
Sbjct: 121 AQPEKWDVSLSLPQRTLRHLLNMVHFAMAQQDIRYYLNGMLLVFEAGCVR--AVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA         I +   +IVPRK V E+ R+L   D  V V ++  +I      + +  +
Sbjct: 179 LAHCAT-AADGITERHEVIVPRKTVLEMQRLLEDSDEPVAVDVAPGQIRFRFGDVELVSK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+ +++ ++  
Sbjct: 238 LVEGKFPDFTRVIPTNYTRQFVVSREALQGSLQRAAILTTDKFKGVRLQLAQNQMKISSS 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E +++ Y   P+D+ FN  YLL+++ N+ ++ +        +  +N+S  + 
Sbjct: 298 NAEQEEAQEELDIDYGHEPLDVGFNVSYLLDVLANVKTENIQWSV----MPDANASALLT 353

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D D            YV+MPMRI
Sbjct: 354 LPDDDQFK---------YVVMPMRI 369


>gi|212659807|gb|ACJ36981.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 262

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 90/264 (34%), Positives = 151/264 (57%), Gaps = 5/264 (1%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  
Sbjct: 4   LAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPARK 63

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A
Sbjct: 64  IYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERIIIA 120

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
             +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++     
Sbjct: 121 EVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKD 178

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
               II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VI
Sbjct: 179 LKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVI 238

Query: 254 PCSNDKELRVNCTNLRQAVDRVSI 277
           P   D+E++V    LR A+ R  +
Sbjct: 239 PIGADREVKVAREVLRDALQRAQL 262


>gi|332531210|ref|ZP_08407123.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624]
 gi|332039317|gb|EGI75730.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624]
          Length = 368

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 112/379 (29%), Positives = 198/379 (52%), Gaps = 24/379 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +V+L+ +   +++  S  EI+I        D    + T
Sbjct: 11  VLSVLQSVAGIVERRHTLPILANVMLRRSGNAVQLTTSDLEIQIRTVAEFEGDSGNFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EY 126
           V A  L DI+R L     ++    +N+L     +  G S F LQS P  +FP  +E   +
Sbjct: 71  VGARKLIDILRTLPSDQTVTLESSQNKL----VLKGGKSKFTLQSLPAEDFPLVQEAANF 126

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
              F +    LK L+ +  F+MA  +IRYYLNGI F    + L L  VATDGHRLA A  
Sbjct: 127 GPKFSVPQKTLKELLGQVSFSMAVHDIRYYLNGILFVAEGQQLSL--VATDGHRLAFASA 184

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
            +  ++ K   +I+PRK V E+ R+LS  + ++++  + ++   +   +    +L++G+F
Sbjct: 185 TLDVEVPKQ-EVILPRKTVLELQRLLSDNEGAIEMQFAGNQAKFSFGGMEFVTKLVEGKF 243

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +   N +  +
Sbjct: 244 PDYNRVIPKNHKNIIVLGRQPLLASLQRAAILTSDKFKGVRLNIEPGTLRIASTNAEQEE 303

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           A++ +++ Y+   ++I FN  YL+E++ N++      + V   L  SNSS  +   D   
Sbjct: 304 AVDELDIDYSGDSIEIGFNVTYLIEVLGNMT-----QEMVRVELSDSNSSALVTIPD--- 355

Query: 367 KNNKDNKVNAFYVLMPMRI 385
                   N  YV+MPMRI
Sbjct: 356 ------NANFKYVVMPMRI 368


>gi|81251081|gb|ABB69882.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS16]
          Length = 369

 Score =  174 bits (441), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 126/387 (32%), Positives = 209/387 (54%), Gaps = 25/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   SVD
Sbjct: 4   IETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQDSVD 63

Query: 63  --VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
                S+TV+A  L DI+R L D AQ+     EN L  +     G S F LQ+ P  +FP
Sbjct: 64  NDEEHSVTVAAKKLQDILRALPDKAQVVLEMGENRLLAKA----GKSRFNLQTLPAEDFP 119

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E +E      +    LK+L+    +A A ++IRYYLNG+   +  ED  L  VATDG
Sbjct: 120 KFPESKEAQGKVTVQQKELKHLLSMVQYATAQQDIRYYLNGL--LLLLEDSYLKVVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A + + A   K   +I+PRK V E+ ++L+  D  + + + ++++     ++ + 
Sbjct: 178 HRLAFALMTLEAPQEK-KEVILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVVLV 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP    K+  +N   L Q + R SI+S+ + + V+L L++D L + 
Sbjct: 237 SKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLRIV 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y+   +DI FN  YLL++++N +S+ +      F   +S++ + 
Sbjct: 297 CSNSEREEAQEELELQYDGEALDIGFNITYLLDVLNNTTSEAI---RCAFGDANSSALIT 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I G D           N  YV+MPMRI
Sbjct: 354 IPGND-----------NFKYVVMPMRI 369


>gi|6606560|gb|AAF19209.1|AF213934_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 218/385 (56%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++     + L    R+I + NT+P+  ++L+  N+ ++ + A+  E E+  +I  S
Sbjct: 1   MKFNIKNKIFTQHLKKINRLISKNNTLPILENILITVNNDIVSLTATNLETELISSIKTS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I    Q+ +++S  K +    +++I   DSN+ L + P   FP
Sbjct: 61  NTHTPGSITVSGQKLLNIX---QNSSELSEIKISLNEDKMHIVSDDSNYILTTLPSDNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F ++S VLK ++E+T F+M  +++RYYLNGI    N++ L   AVATDG+
Sbjct: 118 NHNNFHHISEFFISSDVLKKMIEKTQFSMGKQDVRYYLNGILLEKNKKSL--YAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   +  + S+I+PR+ + E+ ++L+ K   + V + ++ I ++IE L  +V
Sbjct: 176 RLGISKTALKENVC-IFSVIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRIHIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++++       + +N   L+Q++ RVS++S      +++ ++++K  +  
Sbjct: 235 QLIEGEYPDYKSILLRKKKHPIVLNNKILKQSLLRVSVLSXKNFCGIEIHITNNKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N    KA +S  + Y    ++I  N  Y++E+++ I+S  +     +F ++ SN+S+ I
Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSKNI----FIF-VNESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++ +S         + YV+M +R
Sbjct: 350 ESEEDNS---------SLYVIMLLR 365


>gi|148358141|ref|YP_001249348.1| DNA polymerase III subunit beta [Legionella pneumophila str. Corby]
 gi|296105499|ref|YP_003617199.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99
           Alcoy]
 gi|148279914|gb|ABQ54002.1| DNA polymerase III beta chain [Legionella pneumophila str. Corby]
 gi|295647400|gb|ADG23247.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99
           Alcoy]
          Length = 367

 Score =  174 bits (440), Expect = 2e-41,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 200/388 (51%), Gaps = 27/388 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +   S
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GSITV A    DI+R L +    S   +  L   V I    S F L + P   +PS
Sbjct: 63  NNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+    +     + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEFDSN--IISAVATDGHR 177

Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237
           +A++      + Q      +++P+K V E+LR+L+   D  V ++  +S I L       
Sbjct: 178 MAISRYSCNNITQT----KLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LI+  FP Y   IP   DK + ++C  L++A+ R+ I++  + +AV L L   +L +
Sbjct: 234 LSKLIEARFPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +N +  +AIE+++       + I  N  YLL+++ + S     D ++   + ++ SS+
Sbjct: 294 IANNNEQEEAIETLSAETQGDELKIGLNATYLLDVLAHFS-----DGQIRLSMSNTESSI 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I     D         N  Y++MPM+I
Sbjct: 349 LIESLVND---------NYQYIIMPMKI 367


>gi|302035396|ref|YP_003795718.1| DNA polymerase III subunit beta [Candidatus Nitrospira defluvii]
 gi|300603460|emb|CBK39790.1| DNA polymerase III, beta subunit [Candidatus Nitrospira defluvii]
          Length = 376

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 115/369 (31%), Positives = 189/369 (51%), Gaps = 18/369 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R ++L  L     ++E++NT+P+  ++LL+A     EI A+  EI + G   A+
Sbjct: 1   MKVRIGREELLTGLQRVQGVVEKRNTMPILSNILLEAKHDGAEIVATDLEIGMRGLYKAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G +T+SA  LY+I+++L  G       +N   T   I  G S F +   P  ++P+
Sbjct: 61  VLEAGGVTISARKLYEIIKELPSGEIELTSGDNNWTT---IQSGKSQFKVVGLPSGDYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA---VATD 177
               E      LA + L  L+ +T FA    + RY LNG+   +   + K      V TD
Sbjct: 118 LPSIEREGLTPLAGAGLLELIRKTLFAAGDNDARYILNGLLVSLTTTEKKTTLLRLVGTD 177

Query: 178 GHRLAVAEVDIVAQIAKMPS----IIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNI 232
           GHRLAVAE ++    AK P+     I+P+KA  E+ R+L    D    +  +++ +    
Sbjct: 178 GHRLAVAEREVGTPNAKQPAQDIKAIIPKKAAQEMRRLLEEGGDEEPLIGFTKNLMIFRK 237

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             L ++ RL++G +PNYQ V+P  + K + VN   L  A+ RVS++S  +  AVK+S + 
Sbjct: 238 SGLLLTSRLMEGNYPNYQQVVPKESGKRIAVNRGLLESALRRVSVLSKDKANAVKVSFAP 297

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLD 351
             + +   NPD G+A E +   Y    +   FN +YLL+ +       V+D E V  ++D
Sbjct: 298 GGMTLFSSNPDYGEATEELVARYEGEALHTGFNARYLLDALS------VMDGESVSLQMD 351

Query: 352 SSNSSVFIR 360
           ++ S   I+
Sbjct: 352 TALSPCLIQ 360


>gi|212659814|gb|ACJ36983.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 265

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 90/261 (34%), Positives = 153/261 (58%), Gaps = 5/261 (1%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 5   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPARKIYEIVR 64

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 65  ALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 121

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++         II
Sbjct: 122 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 179

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   D+
Sbjct: 180 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 239

Query: 260 ELRVNCTNLRQAVDRVSIMSS 280
           E++V    LR A+ R +I+S+
Sbjct: 240 EVKVAREVLRDALQRAAILSN 260


>gi|239813021|ref|YP_002941931.1| DNA polymerase III, subunit beta [Variovorax paradoxus S110]
 gi|239799598|gb|ACS16665.1| DNA polymerase III, beta subunit [Variovorax paradoxus S110]
          Length = 368

 Score =  174 bits (440), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 195/378 (51%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L  L     I+ER++T+P+  +VL++   G L++  S  EI+I        D    + T
Sbjct: 11  VLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGDEGNFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           + A  L DI+R +     +S        +++ +  G S F LQS P  +FP  +E   + 
Sbjct: 71  IGARKLIDILRTMPADQTVSL---ESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAANFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +    LK+L+ +  FAMA  +IRYYLNGI F    E  +L  VATDGHRLA +   
Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFSSAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ +   +I+PRK V E+ R+LS  + ++++  + ++   +   +    +L++G+FP
Sbjct: 186 LDVEVPRQ-EVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +N +  +A
Sbjct: 245 DYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            + +++ Y    ++I FN  YL++ + N+  D V  D     L  SNSS  +   +  S 
Sbjct: 305 QDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLD-----LADSNSSALLTIPENASF 359

Query: 368 NNKDNKVNAFYVLMPMRI 385
                     YV+MPMRI
Sbjct: 360 K---------YVVMPMRI 368


>gi|238025686|ref|YP_002909917.1| DNA polymerase III subunit beta [Burkholderia glumae BGR1]
 gi|237874880|gb|ACR27213.1| DNA polymerase III, beta subunit [Burkholderia glumae BGR1]
          Length = 368

 Score =  173 bits (439), Expect = 3e-41,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 201/387 (51%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L  L     I+ER++T+P+  ++L+      +   ++  E++IT    A   
Sbjct: 4   VKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQIT--TRADFG 61

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V G   + TV+A  L DI+R + DG Q++    ++    + +  G S F LQ+    EFP
Sbjct: 62  VGGEQVATTVAARKLLDILRAMPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATDG
Sbjct: 118 TVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA + + I         +IVPRK + E+ R+L   D  V + +++++       + + 
Sbjct: 176 HRLAYSSMKIDGGTFPRQEVIVPRKTILELQRLLEDIDDVVNIDIAQTQAKFTFGQVELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L + 
Sbjct: 236 SKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKIM 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  +A E + + Y    +DI FN  YLL+++ N+       + +   L  ++SS  
Sbjct: 296 STNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLKV-----ENIQVSLGDASSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            YV+MPMRI
Sbjct: 351 ITIPEIDEFK---------YVVMPMRI 368


>gi|317401671|gb|EFV82296.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
          Length = 371

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 27/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT      V 
Sbjct: 6   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65

Query: 63  VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               S TV+A  L DI++ L D   +      N+L    ++    S F LQ+   SEFP+
Sbjct: 66  HDNESTTVAARKLLDILKALPDTGDVRLALASNKL----SVQSAKSRFALQTLAASEFPT 121

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + E++  S  +    L++L    HFAMA ++IRYYLNG+      E  ++ AVATDGH
Sbjct: 122 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 179

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA    E D    I++   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 180 RLAHCSTEAD---GISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   V    L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y   P+D+ FN  YLL+++ N+  D +   +     D++ S++
Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEPLDVGFNVGYLLDVLSNVKVDNI---QWSVMPDANASAL 353

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D   K          YV+MPMRI
Sbjct: 354 ITLPEDDQFK----------YVVMPMRI 371


>gi|56477035|ref|YP_158624.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1]
 gi|56313078|emb|CAI07723.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1]
          Length = 367

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/385 (29%), Positives = 202/385 (52%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +T  R  +L  L     I+E+++T+P+  +VL++ +   L + A+  EI+I       + 
Sbjct: 4   LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHGDQLTLLATDIEIQIRTTTAGHIG 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               SITV+A  L DI+R + +G       +  L     +  G S F LQ+ P +++P  
Sbjct: 64  GEDASITVAARKLQDILRAVPEGDVTVMLDDKRL----TVKAGRSRFALQTLPAADYPRM 119

Query: 122 KEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +     F ++    K  + +  +AMA ++IRYYLNG+    +  +L++  VATDGHR
Sbjct: 120 NPPDGDATHFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRM--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   +   +     +I+PRK V E+ R L+  +  ++V L+ +++      + +  +
Sbjct: 178 LAFASNPLAGDVPHT-EVILPRKTVMELARQLADSEDPLEVILAGNQVVFRFGPIELVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ VIP ++ K L      L   + RV+I+++ + + V+L L    L +   
Sbjct: 237 LIDGKFPDYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKIVST 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A+E + V Y++ P+DI FN  YLL++++N++S     D + +R +  NSS  + 
Sbjct: 297 NAEQEEALEELEVDYHDDPLDIGFNVTYLLDVLNNVTS-----DTIEWRFNDGNSSALV- 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                   N   K    YV+MPMRI
Sbjct: 351 ----TLPGNATFK----YVVMPMRI 367


>gi|93004835|ref|YP_579272.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5]
 gi|92392513|gb|ABE73788.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5]
          Length = 391

 Score =  173 bits (439), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 116/413 (28%), Positives = 214/413 (51%), Gaps = 50/413 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ R  +L+ +    +  ++++ + +  ++ LQ  +  L + AS  E+E+T  +   
Sbjct: 1   MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLFESELVLTASDLEVELTSTLKLP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPES 116
              C   G+ T+ A  L DI + L   AQ+S   +EN+      ++ G S F L + P  
Sbjct: 61  AGACVEAGTTTLPATKLRDICKSLPAQAQVSLITQENQ---RCLLTSGKSRFTLGTLPSE 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++PS    E +    ++ S L +L+ +T FAMA +++RYYL G+ F ++++  +L  VAT
Sbjct: 118 DYPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVAT 175

Query: 177 DGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRI-------LSSKDSSVKVSLSESR 227
           DGHRLA+A   +++ A ++     I+PRKAV E+ R+       L  KD++V +S     
Sbjct: 176 DGHRLALARSVIEVSADLSM--QAILPRKAVIELERLATELGKMLGDKDNAVTLSFGREF 233

Query: 228 IHLNIE--------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
           + +++                ++ + RLIDG+FP+Y+ V+P + DK    N   +   + 
Sbjct: 234 LQVSLPFGDVDSAGQVSQDLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLR 293

Query: 274 RVSIMSSVRIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           RV+I+S+ + + V  + +SD +  +  +N +  +A+E +   Y   PM++ FN  YL ++
Sbjct: 294 RVAILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDV 353

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  I  D      +   +  SN+SV +         N+ N     YV+MPMRI
Sbjct: 354 LGVIQGD------LQMHMSQSNASVLV---------NQLNDEFHQYVIMPMRI 391


>gi|197116404|ref|YP_002136831.1| DNA polymerase III subunit beta [Geobacter bemidjiensis Bem]
 gi|197085764|gb|ACH37035.1| DNA polymerase III, beta subunit [Geobacter bemidjiensis Bem]
          Length = 372

 Score =  173 bits (438), Expect = 4e-41,   Method: Compositional matrix adjust.
 Identities = 115/394 (29%), Positives = 213/394 (54%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + +   ++ L     I+E++NT+P+  + LL+  +  L I A+  E+ +  + P +
Sbjct: 1   MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G ITVSA  LY+IV+++ D  +I F  K+N+    V I+ G + F +      EFP
Sbjct: 61  VIREGKITVSAKKLYEIVKEMPD-EEIHFTTKDNDW---VEITCGKARFNIVGLSSEEFP 116

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF---FHINEEDLKLCA 173
                KEE ++      + +L +++E+T +A+  +E +Y LNG+F   F  N E++ L  
Sbjct: 117 YFPKVKEESFLV---FKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENV-LKM 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATDGHRL+V++  I   I    S  +I P+K + E+ +++  +D  + +   ++   + 
Sbjct: 173 VATDGHRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIK 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
             +  + +RLIDGEFP+Y  VIP SND+ +++N      ++ R++I+SS + + VK+ ++
Sbjct: 233 KGNTVVVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVN 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + + ++  NP++G+A E + V Y    +   FN KYL++++  +        EV  +L 
Sbjct: 293 PELVIISSSNPELGEAREEIEVQYEGNNISARFNAKYLIDVLSVMEQ-----REVELKLK 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S V ++   ++             V+MPMR+
Sbjct: 348 DELSPVIMKAAAEEE---------FLAVIMPMRL 372


>gi|224827187|ref|ZP_03700282.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002]
 gi|224600580|gb|EEG06768.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002]
          Length = 368

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/392 (28%), Positives = 201/392 (51%), Gaps = 36/392 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA----IP 58
           +  ER  +L+ L     I+ER++T+P+  +VL++  DG +   A+  EI+IT A    +P
Sbjct: 4   LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKDGAVGFLATDLEIQITTASAETLP 63

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                   +T SA  L DI+R +   + +S  +++     + +  G S F LQ+ P  +F
Sbjct: 64  GE---SFRLTTSAKKLQDILRAIPGNSTVSLEQQDN---RLTLKAGKSRFNLQTLPAEDF 117

Query: 119 P-----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P      T E     +F L    LK L+ +  ++MA ++IRYYLNG+    ++  ++L  
Sbjct: 118 PLLSVNGTPEA----TFSLPQKELKRLISQVQYSMAVQDIRYYLNGLLMQTDDNQVRL-- 171

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATDGHRLA A  +I   + K   +I+PRK + E+ ++L   D  + + +  +++     
Sbjct: 172 VATDGHRLAFAAAEIDTSLPKA-EVILPRKTIIELYKLLQDSDEPITIEVLANQVRFTFG 230

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S  +  +++DG+FP+Y  VIP  NDK   ++      A+ R +I+++ + + V+L L   
Sbjct: 231 STVIISKVVDGKFPDYNRVIPLDNDKLFLIDRLTFLHALQRAAILANEKFRGVRLVLKPG 290

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   N +  +A E + + Y    ++I FN  YLL+++ N+ ++ +   ++ F    +
Sbjct: 291 SLSILCTNSEQEEAEEELEIDYGGGELEIGFNINYLLDVLTNLPAETL---QLAF--GDA 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           N S  +   D              Y++MPMRI
Sbjct: 346 NRSTLVTIPDYSQFK---------YIVMPMRI 368


>gi|6606558|gb|AAF19208.1|AF213933_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 215/388 (55%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++     + L    R+I + +T+P+  ++L+  N+G++ + A+  E E+   I  S
Sbjct: 1   MKFNIKNKIFTQHLKKINRLITKNSTLPILENILITVNNGIISLTATNLETELISNIEIS 60

Query: 61  VDVC-GSITVSAHLLYDIVR---KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
                GSITVS   L +I R   +L D  +IS  KE     +++IS  +SN+ L + P  
Sbjct: 61  KTYTPGSITVSGQKLLNICRNSSELSD-IKISLNKE-----KIHISLENSNYILNTLPAE 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP+    ++V  F ++S +LK ++E+THF+M  +++RYYLNG+    N+  L    VAT
Sbjct: 115 NFPNHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLEKNKTSL--YTVAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG+RL +A+  +   +  + S I+PRK + E+ ++L+ +   + V + ++ I + IE L 
Sbjct: 173 DGYRLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLI 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +V+LI+GE+P+Y++++       + +N   L+Q++ RVS++S      V++ ++++K  
Sbjct: 232 FTVQLIEGEYPDYKSILSRKKQHPIILNNKILKQSLLRVSVLSDKNFCGVEIYITNNKFQ 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N    KA +S  + Y    ++I  N  Y++E+++ ISS  +     +F  + SN+S
Sbjct: 292 VLSNNQHEEKAEDSFKINYYGENIEISINVYYIIEVLNVISSKNI----FIF-FNESNNS 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + I  ++  S           YV+M +R
Sbjct: 347 IHIESEEDHS---------LLYVIMLLR 365


>gi|319940694|ref|ZP_08015036.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805845|gb|EFW02612.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis
           3_1_45B]
          Length = 372

 Score =  173 bits (438), Expect = 5e-41,   Method: Compositional matrix adjust.
 Identities = 112/371 (30%), Positives = 198/371 (53%), Gaps = 24/371 (6%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYDIV 78
           I+ER  ++PV  ++L++     +    +  +I+I  +    V+ C GSIT++A    +I+
Sbjct: 21  IVERNQSLPVVSNILIEQKGVDVTFSTTDLDIQIRTSASVGVEGCEGSITLNAQKFSEIL 80

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
             L+    +    ++  G   +++    +F +Q+ P  +FP  K   +  +F L +  L+
Sbjct: 81  GALRPLDTLDVDIDD--GGLADLTTSGGHFSMQTLPAQDFPVLKIMPWTTTFTLPAKTLR 138

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV--AEVDIVAQIAKMP 196
            L+  T FAMA ++IRY+L G+ F +  E  KL AVATD HRLA   AE+D + Q  K+ 
Sbjct: 139 YLLTMTAFAMAPKDIRYFLMGVLFVV--EGAKLIAVATDTHRLAYCEAEIDGLNQETKIE 196

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC- 255
           +I VPRK V E+LRIL   D+ V V++ +++I  N   +    +LI+G+FP+YQ V+P  
Sbjct: 197 AI-VPRKTVRELLRILPEDDTPVTVNVGDTQIGFNFAGIEFVSKLIEGKFPDYQRVMPTL 255

Query: 256 -SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314
            +N + + +N   L  A+ RV I+++ R   ++   +   L +   N +  +A + + V 
Sbjct: 256 DTNPQCVSINREELLLALRRVQILTNERFHGIRWLFTKGSLTVQGSNAEQEEASQKLAVN 315

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
           +    +DI FN  Y++E+++N+      + EV F   ++  SV +   +  S        
Sbjct: 316 WEWDDLDIGFNLLYMIELLNNLK-----NSEVNFHFAATPKSVLVTMPESSSFR------ 364

Query: 375 NAFYVLMPMRI 385
              Y++MPMRI
Sbjct: 365 ---YLIMPMRI 372


>gi|71064583|ref|YP_263310.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4]
 gi|71037568|gb|AAZ17876.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4]
          Length = 391

 Score =  172 bits (437), Expect = 6e-41,   Method: Compositional matrix adjust.
 Identities = 117/413 (28%), Positives = 216/413 (52%), Gaps = 50/413 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ R  +L+ +    +  ++++ + +  ++ LQ ++  L + AS  E+E+T  +   
Sbjct: 1   MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPES 116
              C   G+ T+ A  L DI + L   AQ++   +ENE      ++ G S F L + P  
Sbjct: 61  AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTTQENE---RCLLTSGKSRFTLGTLPSE 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++PS    E +    ++ S L +L+ +T FAMA +++RYYL G+ F ++++  +L  VAT
Sbjct: 118 DYPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVAT 175

Query: 177 DGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRI-------LSSKDSSVKVSLSESR 227
           DGHRLA+A   +D+ A +  M +I+ PRKAV E+ R+       L  +D++V +S     
Sbjct: 176 DGHRLALARSVIDVNADL-NMQAIL-PRKAVIELERLASELGKMLGDQDNAVTLSFGREF 233

Query: 228 IHLNIE--------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
           + +++                ++ + RLIDG+FP+Y+ V+P + DK    N   +   + 
Sbjct: 234 LQVSLPFGDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLR 293

Query: 274 RVSIMSSVRIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           RV+I+S+ + + V  + +SD +  +  +N +  +A+E +   Y   PM++ FN  YL ++
Sbjct: 294 RVAILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDV 353

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  I  D      +   +  SN+SV +         N+ N     YV+MPMRI
Sbjct: 354 LGVIQGD------LQMHMSQSNASVLV---------NQLNDEFHQYVIMPMRI 391


>gi|212659823|gb|ACJ36985.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 265

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 90/265 (33%), Positives = 153/265 (57%), Gaps = 5/265 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           + L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT
Sbjct: 1   NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           + A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E   
Sbjct: 61  IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
              +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++
Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
                    II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+
Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVD 273
           Y+ VIP   D+E++V    LR A++
Sbjct: 236 YEGVIPIGADREVKVAREVLRDALN 260


>gi|241765811|ref|ZP_04763751.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN]
 gi|241364293|gb|EER59448.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN]
          Length = 372

 Score =  172 bits (437), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 112/382 (29%), Positives = 192/382 (50%), Gaps = 26/382 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 11  VLAVLQSVSGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YV 127
           V A  L DI+R +     +S        +++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 71  VGARKLIDILRTMPGDQTVSLESAQ---SKLILKGGKSRFTLQTLPAEDFPLVQESAAFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +    LK+L+ +  FAMA ++IRYYLNGI F    E  +L  VATDGHRLA A   
Sbjct: 128 PVFSVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFV--AEGKQLSLVATDGHRLAFASAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLID 243
           +  ++ K   +I+PRK V E+ R+LS         +++  + ++       +    +L++
Sbjct: 186 LDVEVPKQ-EVILPRKTVLELQRLLSDAGGDNQPHIEMQFANNQAKFTFGGMEFVTKLVE 244

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L+L    L +  +N +
Sbjct: 245 GKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLRVASNNAE 304

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             +A++ +++ Y    ++I FN  YL++ + N+       D V   L   NSS  +   D
Sbjct: 305 QEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQ-----DMVKVELSDGNSSALVTIPD 359

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
                      N  YV+MPMRI
Sbjct: 360 NS---------NFKYVVMPMRI 372


>gi|39995112|ref|NP_951063.1| DNA polymerase III subunit beta [Geobacter sulfurreducens PCA]
 gi|39981874|gb|AAR33336.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens PCA]
 gi|298504142|gb|ADI82865.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens KN400]
          Length = 372

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 115/396 (29%), Positives = 211/396 (53%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R      L     I+E++NT+P+  +VL++A +  +E+ A+  E+ +  + P +
Sbjct: 1   MEFTIDRDTFSRALQKIQGIVEKRNTMPILSNVLIEALEDRIELTATDLEVGMKSSYPTT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G ITVSA  LY+IV++L D   ISF  K N+    V I  G + F +      EFP
Sbjct: 61  VASQGKITVSAKKLYEIVKELPD-ETISFLTKANDY---VEIRCGKAKFTIVGLSSEEFP 116

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAV 174
                 EE ++    + S +L +++E+T +A+  +E +Y LNG F   +EED +  L  V
Sbjct: 117 YFPKVNEESFI---RIESGLLADMIEKTSYAICFDETKYNLNGTFVKASEEDGRSILRMV 173

Query: 175 ATDGHRLAVAEVD----IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           ATDGHRL++ + +    +  ++AK   +I P+K + E+ ++   + + + +   ++   +
Sbjct: 174 ATDGHRLSITQREFNGAVSPEMAK--GVIFPKKGIFELKKMCEEESTQLSLGFLDNSAVI 231

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
              +  + +RL+DGEFP+Y  V+P +ND+ + V       ++ R+SI+SS + + +K+ +
Sbjct: 232 VKGNTVVVMRLVDGEFPDYTRVVPVANDRIVTVARDPFFHSLRRMSILSSEKFKGIKMDI 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVVFR 349
               + ++  NP++G+A E ++  +    + I FN KYL++++       V+D+  V   
Sbjct: 292 QESGMVISSSNPELGEASEELDAVFAGDAISIRFNAKYLIDVL------AVLDESSVALH 345

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L    S   +R  D D             V+MPMR+
Sbjct: 346 LKDELSPAIVRPADGDGFTA---------VIMPMRL 372


>gi|187735318|ref|YP_001877430.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425370|gb|ACD04649.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 366

 Score =  172 bits (436), Expect = 7e-41,   Method: Compositional matrix adjust.
 Identities = 111/385 (28%), Positives = 196/385 (50%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ +   L+ L     ++  K T+P+  +V ++A +G +   A+  ++ ITG +PA+
Sbjct: 1   MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G++T+ A  L  I+ +L +   Q+   + N+   E     G S F L   P  EFP
Sbjct: 61  VLREGTVTLPAKKLVSIISELPEAEVQVDVNQRNQAAVEC----GRSQFKLNGLPADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    +++  ++L++ + RT +A++T+  RY LNGI   ++  + K+  VATDG 
Sbjct: 117 ELPSFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGI--SLSFRNGKMTLVATDGR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+AE  +     +    I+P KAVGE+ R+L  +  +V +  + ++    I    +  
Sbjct: 175 RLALAETALEFPEEQQLDAILPTKAVGELRRLLD-EVGTVTIRFTRNQAAFEINDTLLIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG +PNY+ VIP    + + + C  L + V RVS++S  +   +KL+   ++L +  
Sbjct: 234 KLIDGNYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVAS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +G+A ESM + Y+  P+ I FN  + +  +  ++ D V+   ++   D  +  V  
Sbjct: 294 SAEGVGEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTVITLNLI---DEMSPGVLK 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
            G +              YVLMPMR
Sbjct: 351 IGDE------------FLYVLMPMR 363


>gi|11320913|gb|AAG33952.1|AF197892_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  172 bits (436), Expect = 8e-41,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 216/387 (55%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFNINNKIFIQYLKKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELIANIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEF 118
            D + GS TVS+  + DI R   D + I      EL  + ++I+  +S++ L++ P   F
Sbjct: 61  EDCISGSTTVSSQKILDICRYSSDLSDIKI----ELSQDKMHITSDNSHYILKTLPIDNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     +V  F + S+ L++++E+THF+M  +++RYYLNG+   I +  L +  VATDG
Sbjct: 117 PNHNSFHHVVEFFIHSNSLRDMIEKTHFSMGKKDVRYYLNGMLLEIIDNSLHM--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RLA+A+  ++ QI K   +I++ R+ + E+ ++L+    S+K+ + ++ I + I++L  
Sbjct: 175 YRLALAKT-LLNQIKKQSFAIVIARQGIIELYKLLNVSKQSIKILIGKNNIRIFIKNLIF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G FPNY +V     +  + +NC  L++++ R +I+S  +   V++ +++++  +
Sbjct: 234 TAQLIEGTFPNYTSVFLKKKNNGIILNCKLLKRSLLRTAILSHEKFCGVEIHINNNEFKV 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A +   + YN   ++I  N  Y+L+I++ ISS     + ++  ++ SN+S+
Sbjct: 294 LSDNQEEETAEDKFQIDYNNPSIEISINVYYILDILNTISS-----ENILLFVNHSNNSI 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I           +N  +  Y++M ++
Sbjct: 349 QIEA---------ENDASTIYIVMLLK 366


>gi|319790696|ref|YP_004152336.1| DNA polymerase iii, beta subunit [Variovorax paradoxus EPS]
 gi|315593159|gb|ADU34225.1| DNA polymerase III, beta subunit [Variovorax paradoxus EPS]
          Length = 368

 Score =  172 bits (436), Expect = 9e-41,   Method: Compositional matrix adjust.
 Identities = 110/378 (29%), Positives = 195/378 (51%), Gaps = 22/378 (5%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L  L     I+ER++T+P+  +VL++   G L++  S  EI+I        D    + T
Sbjct: 11  VLAALQSVSGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGDEGNFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           + A  L DI+R +     +S        +++ +  G S F LQS P  +FP  +E   + 
Sbjct: 71  IGARKLIDILRTMPADQTVSL---ESSASKLVLKGGKSRFTLQSLPAEDFPLVQEAANFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +    LK+L+ +  FAMA  +IRYYLNGI F    E  +L  VATDGHRLA +   
Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFSSAM 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ +   +I+PRK V E+ R+LS  + ++++  + ++   +   +    +L++G+FP
Sbjct: 186 LDVEVPRQ-EVILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +N +  +A
Sbjct: 245 DYNRVIPKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASNNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            + +++ Y    ++I FN  YL++ + N+  D V  D     L  SNSS  +   +  S 
Sbjct: 305 QDELDIDYGGDAIEIGFNVTYLIDALSNMDQDMVKLD-----LADSNSSALLTIPENASF 359

Query: 368 NNKDNKVNAFYVLMPMRI 385
                     YV+MPMRI
Sbjct: 360 K---------YVVMPMRI 368


>gi|262193328|ref|YP_003264537.1| DNA polymerase III subunit beta [Haliangium ochraceum DSM 14365]
 gi|262076675|gb|ACY12644.1| DNA polymerase III, beta subunit [Haliangium ochraceum DSM 14365]
          Length = 365

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 109/386 (28%), Positives = 204/386 (52%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           M+  +++S+ L+ L  A  I +RK+T+P+  +VLL+ +    L + A+   + I+  + +
Sbjct: 1   MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G +TV A  L+DIV  + +   +    +N       IS G   + L   P+ +FP
Sbjct: 61  KNSAEGGLTVGAKALFDIVANMPEDDVVLRRTDNNWA---EISCGKVKYRLVGMPDRDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E       ++ + +++ +++RT F++  +E R++LNG+ F  +    ++  V+TDGH
Sbjct: 118 KVPEHSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARM--VSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  E  +    A    II+P+K +GEI ++L S   +  V++    I ++ +S+ ++V
Sbjct: 176 RLSKVERTLEGAPALTAGIIIPKKGIGEIKKLLESGGKAA-VAVKTPYIFVHADSMILAV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP Y+ VIP  + +E+ ++   L  A+ R  +MSS   + VK ++S D L +T 
Sbjct: 235 KLIESQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSS-ETRGVKFNVSPDSLVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DNPD+G+  E +   Y+   + I FN KY+++++  +++     D+V   L+       +
Sbjct: 294 DNPDIGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMAT-----DQVTLELNGELDPGLL 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R    D         N   V+MPMRI
Sbjct: 349 RPFSDD---------NYLGVVMPMRI 365


>gi|34580501|ref|ZP_00141981.1| DNA polymerase III beta chain [Rickettsia sibirica 246]
 gi|28261886|gb|EAA25390.1| DNA polymerase III beta chain [Rickettsia sibirica 246]
          Length = 379

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 124/399 (31%), Positives = 215/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G  TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  ++V LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEVLLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           SM  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 SMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDVV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|311103226|ref|YP_003976079.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans A8]
 gi|310757915|gb|ADP13364.1| DNA polymerase III, beta subunit [Achromobacter xylosoxidans A8]
          Length = 369

 Score =  172 bits (435), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 203/388 (52%), Gaps = 27/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT      V 
Sbjct: 4   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 63

Query: 63  VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               S TV+A  L DI++ L D   +      N+L    ++    S F LQ+   SEFP+
Sbjct: 64  QDNESTTVAARKLLDILKALPDTGDVRLALASNKL----SVQSAKSRFALQTLAASEFPT 119

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + E++  S  +    L++L    HFAMA ++IRYYLNG+      E  ++ AVATDGH
Sbjct: 120 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 177

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA    E D    I++   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 178 RLAHCSTEAD---GISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   VN   L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRHFLVNREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y    +D+ FN  YLL+++ N+  D +   +     D++ S++
Sbjct: 295 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDNI---QWSVMPDANASAL 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D   K          YV+MPMRI
Sbjct: 352 ITLPEDDQFK----------YVVMPMRI 369


>gi|254230348|ref|ZP_04923734.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25]
 gi|151937140|gb|EDN56012.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25]
          Length = 256

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 85/273 (31%), Positives = 164/273 (60%), Gaps = 17/273 (6%)

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P ++FP+ ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I+   L+  
Sbjct: 1   LPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEIDGTTLR-- 58

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           +VATDGHR+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   +
Sbjct: 59  SVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEV 117

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            + + + +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+ 
Sbjct: 118 NNFTFTSKLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAD 177

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            ++ +T +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  
Sbjct: 178 TEMRITANNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSD 232

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +N+S  I   D DS         A YV+MP+R+
Sbjct: 233 ANASALIENADDDS---------AMYVVMPIRL 256


>gi|299135925|ref|ZP_07029109.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602049|gb|EFI58203.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8]
          Length = 389

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 201/388 (51%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ITV R+++L  L  A  ++ERK TIP+  + L +A+D  L I A+  +  +  +  A 
Sbjct: 17  LEITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASDEKLTITATDLDQSLKTSCVAK 76

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T+ A  L+D ++ L +G       +N     V I  G SN  +     + FP 
Sbjct: 77  VKKAGACTIPARKLFDYIKLLPEGDISIKLMDNHW---VQIRAGRSNTKMVGMARANFPQ 133

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V  F++ ++ LKN++ +T FA++ EE RY LNG    +  E + +  VATDGHR
Sbjct: 134 VPEFPEVGVFKINAASLKNMIAKTIFAISNEESRYTLNGALLVLKAESMAM--VATDGHR 191

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM 237
           LA  E   + +  I+     ++PRKA+ E+  +L + ++  V+ +  E  +   I    +
Sbjct: 192 LAHIEKLGEALEGISGEKKTLIPRKALAELSGLLGASETDFVEFADDEQSLFFRIGGRVL 251

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + R + G+FPNY+ V+P  N K + V   +L  ++ RV+  +  R  A+K+ L  ++L +
Sbjct: 252 TSRKLTGQFPNYEAVLPRDNTKFVIVRSEDLMSSIQRVAQFADERSGAIKIRLEQNELKL 311

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D G++ + +   YN  P+ + FN  YL++ +        V  EV      + S+ 
Sbjct: 312 SAQSTDAGESEDIIETPYNYDPLVVGFNSSYLVDFLRATG----VTGEVRLEFKDAQSAG 367

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R +D     N+D K    Y+LMPMRI
Sbjct: 368 QMRPED----GNEDVKYR--YILMPMRI 389


>gi|15892506|ref|NP_360220.1| DNA polymerase III subunit beta [Rickettsia conorii str. Malish 7]
 gi|20137866|sp|Q92I37|DPO3B_RICCN RecName: Full=DNA polymerase III subunit beta
 gi|15619665|gb|AAL03121.1| DNA polymerase III beta chain [Rickettsia conorii str. Malish 7]
          Length = 379

 Score =  171 bits (434), Expect = 1e-40,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 215/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G  TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  +++ LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           SM  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 SMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDVV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|325980883|ref|YP_004293285.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212]
 gi|325530402|gb|ADZ25123.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212]
          Length = 371

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 209/388 (53%), Gaps = 25/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I   R  +L+ L     I+ER+ T+P+  +VL++ N        +  EI+I   +  S+ 
Sbjct: 4   IKTNRDTLLKPLQTVTGIVERRQTLPILSNVLIRQNQEKTSFLTTDLEIQIKTEVAESLS 63

Query: 63  VCG--SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                + TVSA  L DI+R L    +++  ++++    + +    S F LQ  P  +FP 
Sbjct: 64  SQKDFAFTVSAKKLQDILRSLSADIEVTLTRKDD---HLLVKSHKSAFNLQILPAEDFPE 120

Query: 121 -TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            T+E E   +  L     K+L+    FA+A ++IRYYLNG+   I+ +  +L +V TDGH
Sbjct: 121 VTEEPESDNAVTLTQKEFKDLLHLVQFAVAQQDIRYYLNGLLLLIDGK--QLISVGTDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA     +  +  K   +I+PRKAV E+ ++L   +  +K+   ++++  +   +++  
Sbjct: 179 RLAFVSTGL-DKAQKKQEVILPRKAVFELSKLLHDNEDPIKIEYFQNKVRFSFSDITLIS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKLCM 297
           ++IDG+FP+Y  VIP  N+K   +N     QA+ RVSI+S  S + + V+L ++ D L +
Sbjct: 238 KIIDGKFPDYNRVIPTRNNKLFEINRLVFLQALQRVSILSNQSDKFRGVRLIVNKDNLRI 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N +  +A E + + Y + P+DI  N  YL+++++N++S+ V   +  F  +++NSSV
Sbjct: 298 ICKNNEQEEAEEELEINYQDDPVDISLNITYLMDLLNNVTSERV---QCAF--ENANSSV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +         N+  K    Y++MPMRI
Sbjct: 353 LM-----TVPGNEIFK----YIVMPMRI 371


>gi|293602696|ref|ZP_06685137.1| DNA-directed DNA polymerase III beta subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818887|gb|EFF77927.1| DNA-directed DNA polymerase III beta subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 371

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 202/388 (52%), Gaps = 27/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT      V 
Sbjct: 6   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65

Query: 63  VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               S TV+A  L DI++ L D   +      N+L    ++    S F LQ+   SEFP+
Sbjct: 66  QDNESTTVAARKLLDILKALPDTGDVRLALASNKL----SVQSAKSRFALQTLAASEFPT 121

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + E++  S  +    L++L    HFAMA ++IRYYLNG+      E  ++ AVATDGH
Sbjct: 122 VAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 179

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA    E D    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 180 RLAHCSTEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEVVSIDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   V    L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFMVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y    +D+ FN  YLL+++ N+  D +   +     D++ S++
Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDSI---QWSVMPDANASAL 353

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +D   K          YV+MPMRI
Sbjct: 354 ITLPEDDQFK----------YVVMPMRI 371


>gi|134297883|ref|YP_001111379.1| DNA polymerase III subunit beta [Desulfotomaculum reducens MI-1]
 gi|134050583|gb|ABO48554.1| DNA polymerase III, beta subunit [Desulfotomaculum reducens MI-1]
          Length = 365

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 108/345 (31%), Positives = 184/345 (53%), Gaps = 9/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   R ++++ +  A R +  KN +P+   +LL A D  L+++A+  E+ I   +P +
Sbjct: 1   MKIICTRQNLIQGVTTAQRAVSAKNPLPILSGILLTAKDNKLKLQATDLEMGIQCVVPCT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
               GSI + A  L +IVR+L D   QI    E+  GT V I +G S   +  F   EFP
Sbjct: 61  TQEEGSIVLPAKYLSEIVRRLPDSPIQI----ESNQGTNVIIRYGQSEITINGFDAEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +   S  +    LK  + +  FA  ++E R    G+   I    L+L  V TD H
Sbjct: 117 TFPKPQSKNSLTIPEEELKEYLRQILFATLSDENRPVFTGVLMEILNGTLRL--VTTDTH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ E+   + +    +II+P K + E+ R++ + D  V +SL E++I   +E   +  
Sbjct: 175 RLAMREIK-DSSVDNDINIIIPGKTLNELTRVIGAADQQVTISLGENQIIFGMEDTLLIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ VIP  +   +R+   +L +A +R S+++ V  Q ++L++  +K+ +T 
Sbjct: 234 RLIEGQFPNYRQVIPQGHKTRIRLKTKDLLEASERASLLARVGTQIIRLNIEEEKIILTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            N ++G+  E + VY     + I FN  YL++ +  I SD +  D
Sbjct: 294 -NTEVGRIHEEVPVYLQGESLQISFNAMYLIDALRAIGSDNIYFD 337


>gi|148262087|ref|YP_001228793.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4]
 gi|146395587|gb|ABQ24220.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4]
          Length = 372

 Score =  171 bits (434), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 191/345 (55%), Gaps = 7/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V +    + L     I+E++NT+P+  + L++A++  L I A+  E+ +  + P +
Sbjct: 1   MEFRVAKDTFTKALQKIQGIVEKRNTMPILSNTLIEAHNDTLYITATDLEVGMKSSYPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  +Y+I+++L D   +   KEN+    V I  G ++F +      EFP 
Sbjct: 61  VIKEGKITVSAKKIYEIIKELSDEEIVFSTKENDW---VEIHCGKAHFNIVGLSPDEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +        L + +L  ++E+T +A+  +E ++ LNGIF     E+ +  L  VATDG
Sbjct: 118 FPKINDNSFITLNNQILSEMIEKTSYAICNDETKFNLNGIFIKATTENERNVLRMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL+V E ++   I+      +I P+K + E+ ++   +   + +   ++   +   +  
Sbjct: 178 HRLSVTEKELSGNISNELNKGVIFPKKGIFELKKMTEEEIGDIMLGFMDNSAVIKKGNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDGEFP+Y  VIP +NDK +++   +L  ++ R++I+SS + + +KL + +  + 
Sbjct: 238 IVMRLIDGEFPDYTKVIPTNNDKIIKILRESLLHSLRRMAILSSEKFKGIKLDVRNGSVE 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++  NP++G A E + V Y   P+ + FN +YL++++  +  DEV
Sbjct: 298 ISSSNPELGDAREELEVDYQGEPLSVRFNARYLIDVLTILKEDEV 342


>gi|312794751|ref|YP_004027673.1| DNA polymerase III, beta chain [Burkholderia rhizoxinica HKI 454]
 gi|312166526|emb|CBW73529.1| DNA polymerase III, beta chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 401

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 200/385 (51%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           +  ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT      + 
Sbjct: 37  VKTERDTLLRPLQTVSGIVERRHTLPILANLLISKNGPDVSFLSTDLELQITTRADFGIG 96

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS- 120
           +   + TV+A  L DI+R +  G       +  L     +  G S F LQ+    EFP+ 
Sbjct: 97  NEQVATTVAARKLVDILRAMPIGDVTLTLSDKRL----TVQSGKSRFALQTLAADEFPTL 152

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + +++  +  +     K L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDGHR
Sbjct: 153 AQAKDFGANLSVPQKTFKQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGHR 210

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA + +      A+   +I+PRK + E+ R+L   D  + + ++ +++      + +  +
Sbjct: 211 LAFSSMKTDGAFARQ-EVIIPRKTILELQRLLEDIDDPLTIDIASTQVKFTFGQVELVSK 269

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP++Q VIP  +     +    L+ ++ R +I++S + + V+  ++  +L +   
Sbjct: 270 LVEGKFPDFQRVIPKGHKNTFMIGRDELQHSLQRAAILTSDKFKGVRCIVAPGQLKIMST 329

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N D  +A E + + Y    +D+ FN  YLL+++ N+  D +   +V    D+++S++   
Sbjct: 330 NADQEEAQEELEIAYQGDTLDVGFNVTYLLDVLANLKVDMI---QVALGSDATSSALITI 386

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +++  K          YV+MPMRI
Sbjct: 387 PENEQFK----------YVVMPMRI 401


>gi|187479880|ref|YP_787905.1| DNA polymerase III subunit beta [Bordetella avium 197N]
 gi|115424467|emb|CAJ51021.1| DNA polymerase III, beta chain [Bordetella avium 197N]
          Length = 371

 Score =  171 bits (433), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 117/388 (30%), Positives = 202/388 (52%), Gaps = 27/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT      V 
Sbjct: 6   VQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADFGVG 65

Query: 63  VCG-SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               S TV+A  L DI++ L D   +      N+L    ++    S F LQ+   SEFP+
Sbjct: 66  ADNESTTVAARKLLDILKALPDTGDVKLALASNKL----SVQSAKSRFALQTLAASEFPT 121

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + E++  S  L    L++L    HFAMA ++IRYYLNG+      E  ++ AVATDGH
Sbjct: 122 VAQPEQWDVSLTLPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVF--EPGRVRAVATDGH 179

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA    E D    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 180 RLAHCATEAD---GIAERHEVIVPRKTVLEMQRLLEDSDEPVSLDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   V+   L+ ++ R +I+++ + + V+L L  + + +
Sbjct: 237 VSKLVEGKFPDFSRVIPTNYTRHFLVSREALQGSLQRAAILTTDKFKGVRLQLGHNVMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y+   +D+ FN  YLL+++ N+   E V+  V   +  +N+S 
Sbjct: 297 SSSNAEQEEAQEEIDIDYSHEALDVGFNVGYLLDVLANVKV-ENVEWSV---MPDANASA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D D            YV+MPMRI
Sbjct: 353 LITLPDDDQFK---------YVVMPMRI 371


>gi|171462834|ref|YP_001796947.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192372|gb|ACB43333.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 371

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 210/390 (53%), Gaps = 29/390 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           +   R ++L+ L     I+ER++T+P+  ++L +  +  +   ++  EI+IT      V 
Sbjct: 4   VNTSRDNLLKPLQVVSGIVERRHTLPILANLLFKKIEEKVSFVSTDIEIQITTNANFGVG 63

Query: 62  --DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             DV  + TV+A  L DI+R L +G      K++++     +  G S F LQ+   +EFP
Sbjct: 64  SEDV--TTTVAARKLLDILRALPEGPVFLNLKDSKM----VVQSGKSRFSLQTLSATEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +   E   +++++    + L+ + HF+MA ++IRYYLNG+   +  E  ++ AVATDG
Sbjct: 118 VMQSVGEVTAAWKMSQKSFRQLISQVHFSMAQQDIRYYLNGMLLVV--EGKEVVAVATDG 175

Query: 179 HRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           HRLA ++V++V   +   +   +I+PRK + E   +L   D  +++SL+ +++  +   +
Sbjct: 176 HRLAYSQVELVEAPSGSGQKQEVIIPRKTILECQHLLEGSDEPLEISLTANQVKFSFGDI 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +L++G+FP++Q VIP      L V    L+ A+ R +I+++ + + V+ SLS +++
Sbjct: 236 ELISKLVEGKFPDFQRVIPKGQKNSLVVGRDALQSALQRAAILTTDKFKGVRFSLSPNRI 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   N +  +A E +   Y    ++I FN  YLL+++ N+      ++++   L  +NS
Sbjct: 296 TIQSTNAEQEEAQEEIETEYAGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDANS 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  I     +S           YV+MPMRI
Sbjct: 351 SAVITLPGSESFK---------YVVMPMRI 371


>gi|229586697|ref|YP_002845198.1| DNA polymerase III subunit beta [Rickettsia africae ESF-5]
 gi|228021747|gb|ACP53455.1| DNA polymerase III beta chain [Rickettsia africae ESF-5]
          Length = 379

 Score =  171 bits (432), Expect = 2e-40,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 215/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLLAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G  TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  +++ LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           SM  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 SMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDVV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|11320911|gb|AAG33951.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  171 bits (432), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 193/344 (56%), Gaps = 7/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ +  ++ L +  R I +  + P+  +VL+   + +L + A+  EIE+   I  S
Sbjct: 1   MKFNIKNNIFVQHLQNVNRFITKNTSFPILENVLISIKNRILSLTATNLEIELISNIELS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V GSITVS+  L  I R   + + I     N    ++++    S++ L + P  +FP
Sbjct: 61  KHYVPGSITVSSRKLLQICRNSLNSSNIQVELHN---NKMHVISEKSHYILNTLPSDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     Y+  F + S +LK ++E+THF+M  +++RYYLNG+ F I +  L +  VATDG+
Sbjct: 118 NHNNXCYISEFTIQSKILKEMIEKTHFSMGKQDVRYYLNGMLFKIXDNSLHI--VATDGY 175

Query: 180 RLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL  ++  +  + I K  SII+ RK + E+ ++L+S    VKV +  S I + IE L  +
Sbjct: 176 RLGTSKTLLTKEEIIKNFSIIIARKGITELYKLLNSSTQLVKVFIGRSNIRIYIEQLIFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY+++     +  + +NC  L+Q++ R +I++  +   +++ ++ D+  + 
Sbjct: 236 AQLIEGKFPNYESIFLKKKNNGIILNCQLLKQSLLRAAILAHEKFCGIEIHVNKDQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            DN +   A ++ ++ Y    ++I  N  Y+L+I++ I+S  ++
Sbjct: 296 SDNQEEETAEDTFDINYIGPSIEISINVYYILDILNVINSKNIL 339


>gi|126640117|ref|YP_001083101.1| DNA polymerase III [Acinetobacter baumannii ATCC 17978]
          Length = 305

 Score =  170 bits (431), Expect = 3e-40,   Method: Compositional matrix adjust.
 Identities = 93/297 (31%), Positives = 163/297 (54%), Gaps = 28/297 (9%)

Query: 101 ISHGDSNFYLQSFPESEFPS-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159
           +  G+S F L + P  ++P  T E       ++    LK L E+T FAMA +++R+YL G
Sbjct: 25  LKSGNSRFVLGTLPAEDYPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTG 84

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219
               I+E  L+  AV TDGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  +
Sbjct: 85  TLLEIDENQLR--AVTTDGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQL 142

Query: 220 KVSLSESRIHLNIESLS-----------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268
            + +    +++ I + S            + +LIDG+FP+Y+ VIP   DK + +     
Sbjct: 143 TLLIGRELLNVTINTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVF 202

Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           +Q++ RV+I+S+ +++ V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +Y
Sbjct: 203 KQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQY 262

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           LL+++  +       D+V   +  +N SV ++      +          YV+MPMR+
Sbjct: 263 LLDVLGVLDG-----DDVNMSMTEANQSVLVQDPAHPDQT---------YVVMPMRV 305


>gi|78221230|ref|YP_382977.1| DNA polymerase III subunit beta [Geobacter metallireducens GS-15]
 gi|78192485|gb|ABB30252.1| DNA polymerase III, beta subunit [Geobacter metallireducens GS-15]
          Length = 373

 Score =  170 bits (430), Expect = 4e-40,   Method: Compositional matrix adjust.
 Identities = 119/397 (29%), Positives = 218/397 (54%), Gaps = 36/397 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +++      L     I+E++NT+P+  +VL++A+   +E+ A+  E+ +  +   +
Sbjct: 1   MEFKIDKETFSRALQKIQGIVEKRNTMPILSNVLIEAHADRIELTATDLEVGMKSSYETT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G ITVSA  LY+IV++L + A ISF  KEN+    V I  G ++F +      EFP
Sbjct: 61  VTREGRITVSAKKLYEIVKELPEEA-ISFATKENDW---VEIRCGKAHFSIVGLSPEEFP 116

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAV 174
                 EE  +    +  ++L +++E+T +A+  +E +Y LNG F     ED K  L  V
Sbjct: 117 YFPKVNEESLI---RIEGALLADMIEKTAYAICFDETKYNLNGTFVKATVEDDKPILRMV 173

Query: 175 ATDGHRLAVAEVD----IVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIH 229
           ATDGHRL++AE +    +  ++AK   +I P+K + E+ +I     +  + +   ++   
Sbjct: 174 ATDGHRLSIAEKEFHGAVGPEMAK--GVIFPKKGIFELKKICEEATTEELALGFMDNSAV 231

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +   +  + +RL+DGEFP+Y  V+P +NDK + V       ++ R+SI+SS + + +++ 
Sbjct: 232 IKKGNTVVVMRLVDGEFPDYTRVVPVANDKIVTVARDPFLHSLRRMSILSSEKFKGIRME 291

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           ++ +++ ++  NP++G+A E ++  Y+  P+ I FN KYLL+++  ++  EV    +V R
Sbjct: 292 INGEQMIISSSNPELGEASEELDAAYSGPPLSIRFNAKYLLDVLAVLNESEVA---LVLR 348

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFY-VLMPMRI 385
            + S + V            K   V+ F  V+MPMR+
Sbjct: 349 DELSPAIV------------KPAAVDGFTAVIMPMRL 373


>gi|260221775|emb|CBA30676.1| DNA polymerase III subunit beta [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 362

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 97/334 (29%), Positives = 179/334 (53%), Gaps = 8/334 (2%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VLL+     L++  S  EI+I        D    + T
Sbjct: 11  VLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGDTGSFTTT 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE-EYV 127
           + A  L DI+R +     +S        +++ +  G S F LQ+    +FP  +E   + 
Sbjct: 71  IGARKLIDILRTMPGDQTVSLESSQ---SKIILKGGKSKFTLQTMQAEDFPLVQESASFG 127

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
             F +    LK+L+ +  FAMA  +IRYYLNGI F    E  +L  VATDGHRLA A   
Sbjct: 128 PVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFV--AEGKQLSLVATDGHRLAFASAT 185

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +  ++ K   +I+PRK V E+ R+LS  + ++++  + ++     + +    +L++G+FP
Sbjct: 186 LDVEVPKQ-EVILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTKLVEGKFP 244

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           +Y  VIP ++   + +    L + + R +I++S + + V+L++    L +  +N +  +A
Sbjct: 245 DYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASNNAEQEEA 304

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ +++ Y    ++I FN  YL++ + N+S D V
Sbjct: 305 VDELDIDYGGDSIEIGFNVTYLIDALSNMSQDMV 338


>gi|254496739|ref|ZP_05109598.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12]
 gi|254354034|gb|EET12710.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12]
          Length = 367

 Score =  169 bits (429), Expect = 5e-40,   Method: Compositional matrix adjust.
 Identities = 114/388 (29%), Positives = 205/388 (52%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
            + T+++ D+L  L      +++K ++ +  + L +  D LL I A+  EIEI+  +   
Sbjct: 2   FEFTIKKEDLLTPLLTVAGAVDKKQSLAILSNFLFKIADNLLFITATDLEIEISAQVACE 61

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S +  G+ITV A    DI+R L D A  +   +N + T   I  G S+F L + P   +P
Sbjct: 62  SRNTTGAITVPAKKFIDIIRSLDDQASPNLVFDNGILT---IKQGRSSFKLTTLPAEGYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +++E       +   VL  L++ THFAM+ +++R +LNG+F  ++ E   + AVATDGH
Sbjct: 119 LSEDECNDVELSIPRLVLLQLLQATHFAMSQQDVRVFLNGLF--LDFEPNIISAVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A++     + I+    +++P+K V E+LR+L+  D    VSL+  + H  + S     
Sbjct: 177 RMAISRYQ-CSHISD-KKLLLPKKGVQELLRLLNCIDDE-NVSLAAGKSHFKLVSSQFVF 233

Query: 240 --RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LI+  FP Y   IP + DK++ ++C+ L++A+ R+ I++  + +AV L L    L +
Sbjct: 234 LSKLIEARFPPYAKAIPRNQDKQIIIDCSVLKRALSRIVILAHEKSKAVMLHLQPGLLTL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +N +  +A+ES+        + I  N  YLL+++ +       D ++   L  ++SS+
Sbjct: 294 IANNNEQEEAVESLVAETQGDELKIGLNATYLLDVLSHFG-----DGQIRLSLSQTDSSI 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D         N  Y++MPM+I
Sbjct: 349 LIESLEND---------NYQYIIMPMKI 367


>gi|11320907|gb|AAG33949.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 207/386 (53%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ S  ++ L    R + +  + P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFKIKNSIFIKNLQKINRFVVKNISFPILENILISITNGILSLTATNLEIELIANIKLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
              + GS TVS+  L DI R   + + I     EN++    +I    S++ L + P   F
Sbjct: 61  KHYIAGSTTVSSRKLLDICRHSLNSSDIQIELCENKM----HIISDKSHYILTTLPSDNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIDSNILKTMIEKTHFSMGKQDVRYYLNGMLLEITNHALYM--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL + +  +  QI +  SII+ RK + E+ ++L+     +++ +  + I + IE L+ +
Sbjct: 175 YRLGITKTXLKKQIIEFFSIIIARKGIIELYKLLNVSKQLIRILIGTNNIRIYIEQLTFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L++G+FPNY ++     +  + +N   L+Q++ R +I++  +   V++ +  ++  + 
Sbjct: 235 AQLLEGKFPNYDSLFVTKKNNSIILNNILLKQSLLRAAILTHEKFCGVEIYIKKNQFEVL 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I++ ISS     + V+  L++SN+S+ 
Sbjct: 295 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNAISS-----ENVILFLNNSNNSIQ 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I           +N  +  YV+M ++
Sbjct: 350 IEA---------ENDTSTIYVVMLLK 366


>gi|253698658|ref|YP_003019847.1| DNA polymerase III subunit beta [Geobacter sp. M21]
 gi|251773508|gb|ACT16089.1| DNA polymerase III, beta subunit [Geobacter sp. M21]
          Length = 372

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 113/394 (28%), Positives = 211/394 (53%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + +   ++ L     I+E++NT+P+  + LL+  +  L I A+  E+ +  + P +
Sbjct: 1   MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFF-KENELGTEVNISHGDSNFYLQSFPESEFP 119
               G ITVSA  LY+IV+++ D  +I F  K+N+    V I+ G + F +      EFP
Sbjct: 61  AIREGKITVSAKKLYEIVKEMPD-EEIHFTTKDNDW---VEITCGKARFNIVGLSSEEFP 116

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF---FHINEEDLKLCA 173
                KEE ++      + +L +++E+T +A+  +E +Y LNG+F   F  N E++ L  
Sbjct: 117 YFPKVKEESFLV---FKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENV-LKM 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATDGHRL+V++  I   I    S  +I P+K + E+ +++  +   + +   ++   + 
Sbjct: 173 VATDGHRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEESGEIMLGFMDNSAVIK 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
             +  + +RLIDGEFP+Y  VIP SND+ +++N      ++ R++I+SS + + VK+ ++
Sbjct: 233 KGNTVVVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVN 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + + ++  NP++G+A E + V Y    +   FN KYL++++  +        EV  +L 
Sbjct: 293 PELVIISSSNPELGEAREEIEVQYEGNSISARFNAKYLIDVLSVMEQ-----REVELKLK 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S V ++   ++             V+MPMR+
Sbjct: 348 DELSPVIMKAAAEEE---------FLAVIMPMRL 372


>gi|254246826|ref|ZP_04940147.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184]
 gi|124871602|gb|EAY63318.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184]
          Length = 395

 Score =  169 bits (428), Expect = 7e-40,   Method: Compositional matrix adjust.
 Identities = 103/366 (28%), Positives = 193/366 (52%), Gaps = 26/366 (7%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG---SITVSAHLLYDIVRK 80
           ++T+P+  ++L+  N   +   ++  E++IT    A   V G   + TV+A  L DI+R 
Sbjct: 52  RHTLPILANLLITKNGPDVSFLSTDLELQIT--TRADFGVGGDQIATTVAARKLLDILRA 109

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKN 139
           + DG Q++    ++    + +  G S F LQ+    EFP+  + +++  +  +     + 
Sbjct: 110 MPDG-QVTLSLADK---RLTVQSGKSRFALQTLAADEFPTVAQAKDFGATLTVPQKSFRQ 165

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDGHRLA + + +         +I
Sbjct: 166 LLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGHRLAFSSMKLEGGTFGRQEVI 223

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           VPRK + E+ R+L   D +V + +++++       + +  +L++G+FP++Q VIP ++  
Sbjct: 224 VPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKFPDFQRVIPKAHKN 283

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
              +    L++++ R +I++S + + V+  ++  +L +   N D  +A E + + Y    
Sbjct: 284 TFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTNADQEEAQEELEIAYQGDT 343

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           +DI FN  YLL+++ N+       D V   L  ++SS  I   + D            YV
Sbjct: 344 VDIGFNVTYLLDVLANLKV-----DTVQVSLGDASSSALITVPENDEFK---------YV 389

Query: 380 LMPMRI 385
           +MPMRI
Sbjct: 390 VMPMRI 395


>gi|81251097|gb|ABB69894.1| DNA polymerase III beta chain [Nitrosomonas sp. CNS332]
          Length = 373

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 206/394 (52%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57
           MK+T+   D+L + L     I+ER++T+P+  +VL+   DG L +  +  EIE+  T  I
Sbjct: 1   MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60

Query: 58  PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114
           P  ++  GS+  TVS   L DI+R L  G+ +   + EN L     I  G S F LQ  P
Sbjct: 61  P-ELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRL----QIVSGKSRFSLQLLP 115

Query: 115 ESEFP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             +FP  +   E    SF L   +LK  ++R   AMA +++RYYLNG    I  ED KL 
Sbjct: 116 AEDFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLM 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+   D+  Q  K  +II PRK V E++R L   D  V V +   +I  + 
Sbjct: 174 LVATDTHRLAITSFDLDGQFEKSETII-PRKTVLELIRQLEDSDKPVIVEIYSKKICFHF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290
               +  ++I G+F +++  IP ++  +  +N  +   A+ R +I+SS     ++V L++
Sbjct: 233 SDAVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRSVHLNI 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ KL ++  N +  +A E + + Y+   +D  FN  YL+E+++N+ S     + +    
Sbjct: 293 TNGKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +S  S++ I   D D  N         +VLMPMR
Sbjct: 348 ESMQSAILITLPDDDQFN---------HVLMPMR 372


>gi|157825704|ref|YP_001493424.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford]
 gi|157799662|gb|ABV74916.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford]
          Length = 379

 Score =  168 bits (426), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 215/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G +TVS   L DIVRKL D   I      +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGELTVSTKTLNDIVRKLPDSELIL----TDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 TMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  +++ LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEMLLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLVIGFNPQYLEDVLKAVKSDLV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|157964502|ref|YP_001499326.1| DNA polymerase III subunit beta [Rickettsia massiliae MTU5]
 gi|157844278|gb|ABV84779.1| DNA polymerase III beta chain [Rickettsia massiliae MTU5]
          Length = 379

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 120/398 (30%), Positives = 214/398 (53%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  TVS   L DIVRKL D ++++       G E  I   +  F L + P S FP+
Sbjct: 62  VVSEGEFTVSTKTLNDIVRKLPD-SELTLTDRGTTGLE--IKGKNCKFNLFTLPVSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGHR
Sbjct: 119 MDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLS 236
           L+++ V +  QI     +I+P+K+  EIL+I+      +  +++ LS ++I     E+  
Sbjct: 177 LSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTI 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L 
Sbjct: 236 MLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLE 295

Query: 297 MTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+ 
Sbjct: 296 ISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---ELY 352

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 353 F--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|323703941|ref|ZP_08115571.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323531099|gb|EGB21008.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 365

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 110/345 (31%), Positives = 186/345 (53%), Gaps = 9/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   R ++++ +  A R +  KN +P+   +L  A +  LE+ A+  E+ I   IPA+
Sbjct: 1   MKIICTRQNLVQGVTTAQRGVSAKNPLPILSGILFIAKNNSLELHATDLEMGIQCTIPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   GSI + A  L +IVR+L D   QI   ++N       I +G S   +  +   EFP
Sbjct: 61  VQEEGSIVLPARYLGEIVRRLPDAPIQIDATQDNN----AIIRYGQSEITINGYDAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S  +    LK ++ +  FA +T+E R    G+    N   L+L  VATD H
Sbjct: 117 VLPTPQGKGSLSIPEEDLKEILRQVLFATSTDENRPVFTGVLMENNNGCLRL--VATDTH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ E +I   I  + S+I+P KA+ E+ R++ + D +V +SL ++++  ++E   +  
Sbjct: 175 RLALREENIGNDIEDI-SVIIPGKALNELARVIGAPDRNVTISLGDNQVIFSMEDTRLVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ VIP      LR+    L ++V+R S+++ V  Q V+L++  +K+ +T 
Sbjct: 234 RLIEGQFPNYRQVIPRGYKTRLRMRTKELLESVERASLLARVGSQIVRLAIEEEKVIITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            N ++G+  E + V+ +     I FN  YL++ +  I SD +  D
Sbjct: 294 -NTEVGRIHEEVPVFLDGETTAISFNAVYLIDALRAIGSDNIYLD 337


>gi|67459041|ref|YP_246665.1| DNA polymerase III subunit beta [Rickettsia felis URRWXCal2]
 gi|75536523|sp|Q4ULS3|DPO3B_RICFE RecName: Full=DNA polymerase III subunit beta
 gi|67004574|gb|AAY61500.1| DNA polymerase III beta chain [Rickettsia felis URRWXCal2]
          Length = 379

 Score =  168 bits (425), Expect = 1e-39,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 214/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G +TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGELTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 PMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  +++ LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|258544742|ref|ZP_05704976.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258520013|gb|EEV88872.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 371

 Score =  168 bits (425), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/390 (28%), Positives = 193/390 (49%), Gaps = 24/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAI-- 57
           MK ++ +   LE L     I+ RK T P+  H LLQA  D  L +K  G + E+T  I  
Sbjct: 1   MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLK--GTDTEVTLQILL 58

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              +V   G+ITV A  L D+VR L   A I    E E   ++ +    S F + + P  
Sbjct: 59  HELNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKE---QLLVKAAGSLFRIATLPAE 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+  E +     E  S  L +++++  F+MA+E++RYYLNG++ +I E+   + AV+T
Sbjct: 116 DFPALAEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVST 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRL+ A   +        ++IVP+K V E++++L      V ++L E ++ L +    
Sbjct: 176 DGHRLSCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYR 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +LIDG FPNY+ V+P   +  + ++     +++ R  ++   R   ++L+     L 
Sbjct: 236 LTSQLIDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQ 295

Query: 297 MTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +   N +   A E++ +   +   +++  N  YL++ I  IS      D V   +   +S
Sbjct: 296 LAARNLENETADETLEIINPQNLQLEVALNINYLIDAIATISG-----DNVQLHIADGSS 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I   D +            YV+MPMR+
Sbjct: 351 PCLITSSDDEGVR---------YVIMPMRL 371


>gi|302336551|ref|YP_003801757.1| DNA polymerase III subunit beta [Spirochaeta smaragdinae DSM 11293]
 gi|301633736|gb|ADK79163.1| DNA polymerase III, beta subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 367

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/385 (29%), Positives = 205/385 (53%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T E++ +L+ +  A  II  +N + +  +VLL+A+DG L IKA+  ++     IP  
Sbjct: 1   MKFTCEKNALLKEISIAQEIISTRNALSILSNVLLEADDGSLTIKATDLKVSFETRIPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       I+R L +G       +N +   +       NF L+S    +FP 
Sbjct: 61  IAAPGSTTVFCDKFLGILRSLPEGDIEVELVDNRVM--IRPLFQKINFQLKSIAGDKFPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E      FE+    L  ++ +T FA++ +E RYY+NG++   + E + +  VATDG R
Sbjct: 119 LQEVSEDLYFEIPQKDLIEMIGQTIFAVSDDETRYYMNGVYVEQDGESISM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++ +  I +++ +  ++I+P K + +++R LSS + ++K+++S+  I +  +   ++  
Sbjct: 177 LSLIKRRIESELKEFDAVIIPPKVL-QLIRKLSSGEGNLKIAISDRNIFVQFDDQRITSN 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP S D +L VN   L +A+ RVS++   + + V LS+ +  + +T +
Sbjct: 236 LIEGQFPNYRRVIPDSQDYQLVVNRDQLEEALKRVSLLVEQKSRRVYLSVENAMMRLTSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E ++  Y      I  NY YL E +  +       +EVV R   +N ++ + 
Sbjct: 296 ESDIGVAKEELSCSYEGPETTIALNYLYLAEPLKVMRC-----EEVVLRFTEANKAITLE 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
              +          + F+++MPM++
Sbjct: 351 PVPEG---------DYFHIIMPMQL 366


>gi|239947309|ref|ZP_04699062.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921585|gb|EER21609.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 379

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 195/355 (54%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G +TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGELTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  +++ LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGIFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV 349


>gi|302341688|ref|YP_003806217.1| DNA polymerase III, subunit beta [Desulfarculus baarsii DSM 2075]
 gi|301638301|gb|ADK83623.1| DNA polymerase III, beta subunit [Desulfarculus baarsii DSM 2075]
          Length = 370

 Score =  167 bits (424), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 208/389 (53%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T  + D+   L  +  ++E++ ++P+  +VLL+A DG L + A+  EI   G++ A 
Sbjct: 1   MELTARKEDLARNLQKSQSVVEKRTSMPILSNVLLEAADGGLTVTATDLEISFQGSLEAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G +TV A   Y+I+++L   +   + KE E    ++++ G +++ L     +++P+
Sbjct: 61  VNKPGRVTVPARKFYEIIKELP--SDDVYLKEKE-NQHIHLTGGRASYDLVGLSAADYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +   +   E+   VL  ++E+T F+++ E+ R+ L G+F      D +  L  V+TDG
Sbjct: 118 LPDIADLSCLEVDGDVLGEMIEKTIFSISQEDTRFNLAGLFVQKRRRDDREILRMVSTDG 177

Query: 179 HRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++ + +I  +A +     +I+PRK V E+ R+  ++D  + + L+ S   +  +  +
Sbjct: 178 HRLSLIDREIPGLAALDIAGGVIIPRKGVAEMRRL--AEDGGLSLGLNASFAVVKKDGAT 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +R+ +G FP+Y+ V+P +  +   VN     + + RVSI+++ R Q V+LS     L 
Sbjct: 236 LILRMQEGSFPDYEVVVPKNAGRVALVNRQAFGEVIRRVSILATDRFQGVQLSFKEGLLE 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   NPD+G+A E++ V Y      + FN +Y L++   + S EV+    V      N+ 
Sbjct: 296 LISQNPDLGEARETIEVDYEGESFTVGFNARYFLDLCGAMRS-EVISLAFV----DENNP 350

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+G+  +             V+MPMR+
Sbjct: 351 CLIKGEGDE---------GFLSVIMPMRL 370


>gi|157827170|ref|YP_001496234.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389]
 gi|157802474|gb|ABV79197.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389]
          Length = 379

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 204/379 (53%), Gaps = 27/379 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N I    ++ L A DGLLE+ ++  ++ ++  I   
Sbjct: 2   LKVIVETKTLVQALGFASSVVEKRNVISELANIKLSAKDGLLELSSTNMDLYLSQKIGVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G +TVS   L DIV+KL D    S     +LGT  + I+  +  F L + P   FP
Sbjct: 62  VVSEGELTVSTKTLNDIVKKLPD----SELTLTDLGTTGLEITGKNCRFNLFTLPVESFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+++ +    ++E T F+++ +E RY LNGI+ H+  +D +  A +TDGH
Sbjct: 118 VMDNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHV--KDSEFYAASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL---SSKDSSVKVSLSESRIHLNI-ESL 235
           RL+V+ V +  +I     +I+P+K+  EIL+I+    + ++ +++ LS ++I     E++
Sbjct: 176 RLSVSSVVLAEKIEDF-GVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y + IP ++  +L +N       ++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEAL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV----- 341
            ++      G A E +N          Y  E  +DI FN +YL +++  I SD V     
Sbjct: 295 EISAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFS 354

Query: 342 -VDDEVVFRLDSSNSSVFI 359
            V   V+ +   S   +F+
Sbjct: 355 SVSAPVLIKFPESPKDIFV 373


>gi|148651820|ref|YP_001278913.1| DNA polymerase III subunit beta [Psychrobacter sp. PRwf-1]
 gi|148570904|gb|ABQ92963.1| DNA polymerase III, beta subunit [Psychrobacter sp. PRwf-1]
          Length = 391

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 117/411 (28%), Positives = 211/411 (51%), Gaps = 46/411 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ R  +L+ +    +  ++++ + V  ++ L+  + LL + AS  E+E++  +   
Sbjct: 1   MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAQVKLG 60

Query: 61  VDVCGSI---TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               GSI   T+ A  L++I + L     I+   E+       I+ G S F L + P ++
Sbjct: 61  NGATGSIGATTLPASKLHEICKLLPKDTMINLAAESN--ERCVINSGKSRFVLGTLPAAD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP       +    L+ +VL +L+ +T FAMA +++RYYL G+ F +++   +L  VATD
Sbjct: 119 FPILGNPANITPLTLSRNVLMDLMAKTQFAMAIQDVRYYLTGMLFEVSQR--QLTTVATD 176

Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSESRIH 229
           GHRLA+A   I VA    M +I+ PRKAV        E+ +++   D ++ +S     + 
Sbjct: 177 GHRLALARSVIEVADDFSMQAIL-PRKAVIELERLANELGKLVGGNDGNLTLSFGREFLQ 235

Query: 230 L-----NIES---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
           +     N++S         ++ + RLIDG+FP+Y+ V+P + DK    N   +   + RV
Sbjct: 236 VSLPFGNVDSTGQIDDSVRVTFTARLIDGKFPDYRRVMPNNTDKIALANKEQMTDVLRRV 295

Query: 276 SIMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           SI+S+ + + V    S D  + +  +N +  +A+E++ V Y   P+++ FN  YL +++D
Sbjct: 296 SILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVKYQGAPIELSFNAAYLQDVLD 355

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  D      V   +  +NSSV +         N+ N     YV+MPMRI
Sbjct: 356 VLGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391


>gi|25452934|sp|Q9EVE4|DPO3B_BUCRP RecName: Full=DNA polymerase III subunit beta
 gi|11320921|gb|AAG33956.1|AF197896_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  167 bits (423), Expect = 2e-39,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 215/386 (55%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++   ++E L    R++ +  + P+  ++L+Q  +G+L +  +  EIE+   I   
Sbjct: 1   MKFTIQNDILVENLKKITRLLIKNVSFPILENILIQIENGILSLTTTNLEIELVSKIKII 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
                G IT+S   + +I R L + +++    KE ++     +S  +SN+ L +    +F
Sbjct: 61  TKYTPGKITISGRKILNICRNLSEKSEVKMPLKEKKMY----VSCENSNYILSTLSADDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +   ++ +F ++S++LK ++E+T F+M  +++RYYLNG+     ++D  L +VATDG
Sbjct: 117 PNHQNFNHISNFHISSNILKEMIEKTEFSMGKQDVRYYLNGMLLE--KKDNFLRSVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA++   +   I    SII+P KAV E+ R+L+++   + + +  + I + I+ L  +
Sbjct: 175 YRLAISYSKLEKDI-NFFSIIIPSKAVMELSRLLNTQVQLLNILIGTNSIRIYIKDLIFT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+GE+P+Y++V+       +  NCT L++++ R +I++  +   +++ +  +K  + 
Sbjct: 234 TQLIEGEYPDYESVLFKEKKNPIIANCTLLKKSLLRAAILAHEKFCGIEIKIEKNKFKVL 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A +  ++ Y    ++I  N  YLL++I+NI S     + ++  L+ S SS+ 
Sbjct: 294 SDNQEEETAEDLFDINYLGDTIEISINVYYLLDVINNIKS-----ENIILFLNKSKSSIQ 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I          ++N +NA+ +++  R
Sbjct: 349 IEA--------ENNSLNAYIIMLLKR 366


>gi|332968622|gb|EGK07676.1| DNA-directed DNA polymerase III beta subunit [Kingella kingae ATCC
           23330]
          Length = 367

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 109/384 (28%), Positives = 206/384 (53%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R ++L+ +     I+ERK+T+P+  +VLL+++ G + + A+  EI+I      S  
Sbjct: 4   LETQRDNLLKPIQAVTGIVERKHTLPILANVLLESHAGKIRVLATDLEIQIHTQGAESEH 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               +T +A  L DI++ L D A +     +     + +  G S F LQ+ P  +FP+  
Sbjct: 64  GDFRLTTNAKKLQDILKALPDSANVQLDWADH---RLTLKSGKSRFNLQTLPAEDFPTMN 120

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             +    +F L    LK+++ +  ++MA ++IR+YLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGDTTTAAFALPQETLKHMISQVQYSMAVQDIRFYLNGLLLQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I   + K   +I+PRK V E  ++L+    +  + L + ++ L      +  ++
Sbjct: 179 AFASTTIDTDLPKQ-DVILPRKTVLEWNKLLNQPKENAVIELLDKQVRLRCNDTVVVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP+Y  VIP  N++ + +N   L  A++R SI+++ + + V+L LS+  L ++  N
Sbjct: 238 IDGKFPDYNRVIPMDNNRIVVLNRLALLGALERSSILANEKFRGVRLQLSAGSLRVSCTN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A+E + + Y    ++  FN  +LL+++  +S ++V   ++ F   ++ S++F   
Sbjct: 298 NEQEEAVEELELAYQGESLETSFNISFLLDMLRALSDEDV---QIAFG-TATQSTLFTLP 353

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + K          YV MPMR+
Sbjct: 354 EQPNFK----------YVAMPMRL 367


>gi|238650892|ref|YP_002916748.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic]
 gi|238624990|gb|ACR47696.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic]
          Length = 379

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 122/399 (30%), Positives = 214/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G  TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     II+P+K+  EIL+I+      +  +++ L+ ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GIILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGTFPDYSTFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|157828455|ref|YP_001494697.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933170|ref|YP_001649959.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. Iowa]
 gi|157800936|gb|ABV76189.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908257|gb|ABY72553.1| DNA polymerase III, beta chain [Rickettsia rickettsii str. Iowa]
          Length = 379

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 121/399 (30%), Positives = 214/399 (53%), Gaps = 35/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G  TVS   L DIVRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGECTVSTKTLNDIVRKLPD----SELTLTDLGTTGLEIKGKNCKFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D + C+ +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFCSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  +++ L+ ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V   E+
Sbjct: 295 EISAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDLV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F     ++ V I+  +    N KD      +V+MP+++
Sbjct: 352 YF--SDVSAPVLIKFPE----NPKD-----IFVVMPVKV 379


>gi|6606556|gb|AAF19207.1|AF213932_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  167 bits (423), Expect = 3e-39,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 215/385 (55%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++    ++ L    R+I + +T+P+  ++L+  N+G++ +  +  E E+   I  S
Sbjct: 1   MKFNIKNKIFIQHLKKVNRLISKNSTLPILENILITVNNGIISLTTTNLETELISNIETS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I R   + ++I      +   +++I+  +SN+ L + P   FP
Sbjct: 61  KTHTPGSITVSGQKLLNICRNSSESSEIKISLNED---KMHIASDNSNYILTTLPSENFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  +  ++  F ++S +LK ++E+T F+M  +++RYYLNG+    N+  L   AVATDG+
Sbjct: 118 NHNKFHHISEFFISSDILKKMIEQTQFSMGKQDVRYYLNGMLLEKNKTSL--YAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL + +  +   +  + S+I+PRK + E+ ++L+ +   + V + ++ I ++IE L  +V
Sbjct: 176 RLGITKTFLKEDVF-IFSVIIPRKGIIELHKLLNIEPQLIHVLIGKNNIRIHIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++++    +  + +N   L+Q++ RV+++S      V++ ++++K  +  
Sbjct: 235 QLIEGEYPDYKSILLRKKNHSIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N D  KA +S  + Y    ++I  N  Y++E++  I+S       +   ++ SN+S+ I
Sbjct: 295 NNQDEEKAEDSFKINYCGDDIEISINVYYIIEVLSVITS-----KNIFMFINESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++ +S         + YV+M +R
Sbjct: 350 ESEEDNS---------SLYVIMLLR 365


>gi|224458008|ref|ZP_03666481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254875663|ref|ZP_05248373.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254841662|gb|EET20098.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 329

 Score =  167 bits (422), Expect = 4e-39,   Method: Compositional matrix adjust.
 Identities = 101/326 (30%), Positives = 187/326 (57%), Gaps = 11/326 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
            +    + ++A  +Y+IVR L + + I F + NE   +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDF-RINE--NKVTIVSNNSTFNLISLNADNYPL 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             S   E+   SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TD
Sbjct: 118 IDSNINEQA--SFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +
Sbjct: 174 GHRMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYA 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L 
Sbjct: 234 FISKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLL 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDI 322
           ++ +NPD  KA + + V YN+ PM+I
Sbjct: 294 LSANNPDNEKAEDKIEVQYNDQPMEI 319


>gi|320109372|ref|YP_004184962.1| DNA polymerase III subunit beta [Terriglobus saanensis SP1PR4]
 gi|319927893|gb|ADV84968.1| DNA polymerase III, beta subunit [Terriglobus saanensis SP1PR4]
          Length = 397

 Score =  166 bits (420), Expect = 5e-39,   Method: Compositional matrix adjust.
 Identities = 118/393 (30%), Positives = 209/393 (53%), Gaps = 23/393 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ITV RS++L  L  A  ++ERK TIP+  + L +A++  L I A+  +  +  +  A 
Sbjct: 20  LEITVSRSELLRELTAAQSVVERKTTIPILSNFLFEADEDRLTITATDLDQSLRTSCAAK 79

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T+ A  LYD ++ L DG       +N     V I  G SN  +     + FP 
Sbjct: 80  VKKPGACTIPARKLYDYIKLLPDGEISIKLMDNHW---VQIRAGRSNTKMVGMARANFPQ 136

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S ++A   L++++ +T F++++EE RY LNG    +  E + +  VATDGHR
Sbjct: 137 VAEFPTTGSIKIAVPALRSMIAKTIFSISSEESRYTLNGALLVLKAESMAM--VATDGHR 194

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS------VKVSLSESRIHLNI 232
           LA  E   + +A ++     ++PRKA+GE+  +L++ +++      V+ +  ++ +   I
Sbjct: 195 LAHIERLGENLAGVSGEKKTLIPRKALGELSSLLANSNAATEEEDYVEFADDDTTLFFRI 254

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
               ++ R + G+FPNY+ V+P  N+K + V   +L  A+ RV+  +  R  AVK+ L  
Sbjct: 255 GGRVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMGALQRVAQFADERSGAVKIRLEQ 314

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++L ++  + D G++ + +   YN  P+ + FN +YL++ +  I +      EV      
Sbjct: 315 NELRISSSSTDSGESEDIIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKD 370

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + S+  +R +D    +N+D K    Y+LMPMRI
Sbjct: 371 AQSAGQMRPED----SNEDQKYR--YILMPMRI 397


>gi|332976003|gb|EGK12874.1| DNA-directed DNA polymerase III beta subunit [Psychrobacter sp.
           1501(2011)]
          Length = 391

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 117/412 (28%), Positives = 211/412 (51%), Gaps = 48/412 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M++++ R  +L+ +    +  ++++ + V  ++ L+  + LL + AS  E+E++  +   
Sbjct: 1   MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAEVKLG 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPES 116
             +  V G+ T+ A  L++I + L     ++F  E NE      I+ G S F L + P +
Sbjct: 61  NGATGVVGATTLPASKLHEICKLLPKDTMVNFSAEANE---RCVITSGKSRFVLGTLPAA 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP       +    L+ +VL +L+ +T FAMA +++RYYL G+ F + +   +L  VAT
Sbjct: 118 DFPVLGTPANITPLTLSRAVLMDLMAKTQFAMAIQDVRYYLTGMLFEVAQR--QLTTVAT 175

Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSESRI 228
           DGHRLA+A   I VA    M +I+ PRKAV        E+ +++   D ++ +      +
Sbjct: 176 DGHRLALARSVIDVADDFTMQAIL-PRKAVIELERLGNELGKLVGDNDGNLTLVFGREFL 234

Query: 229 HL-----NIES---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
            +     N+ S         ++ + RLIDG+FP+Y+ V+P S +K    N   +   + R
Sbjct: 235 QVTLPFGNVNSTGQIDDAIKVTFTARLIDGKFPDYRRVMPASTNKVALANKDQMTDVLRR 294

Query: 275 VSIMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           VSI+S+ + + V    S D  + +  +N +  +A+E++ V Y   P+++ FN  YL +++
Sbjct: 295 VSILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVNYQGEPIELSFNAAYLQDVL 354

Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D +  D      V   +  +NSSV +         N+ N     YV+MPMRI
Sbjct: 355 DVLGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391


>gi|11320917|gb|AAG33954.1|AF197894_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 207/364 (56%), Gaps = 11/364 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ + ++  L    R + + NT P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFNIKNNILIHNLQKINRFVTKNNTFPILENILISIKNGILSLTATNLEIELISNITLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + GS T+S+  L DI R   +   +S  +    G +++I    S + L +   + FP
Sbjct: 61  THYIPGSTTISSRKLLDICR---NSLNLSDIQIQLNGNKIHIISDKSKYILTTLSSNNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + K   ++  F + S++++ ++E+THF+M  +++RYYLNG+     + D  L  +ATDG+
Sbjct: 118 NHKNFHHIAEFFINSNIIREMIEKTHFSMGKQDVRYYLNGMLLE--KIDDSLNMIATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +  +     SII+ RK + E+ ++L+  +  +K+ +++S I + IE    + 
Sbjct: 176 RLGISKTILQEKKISSFSIIITRKGITELYKLLNIPNQKIKILIAKSHIRIYIEQFIFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FPNY++V+    +  + +N   L+Q++ RVSI+S  +   V++ +  +   +  
Sbjct: 236 QLIEGQFPNYESVLFQQKNNGIILNSKLLKQSLMRVSILSHEKFCGVEIYIRDNTFKVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  ++ Y    ++I  N  Y+L+I+++I+S+ +    ++F L++SN+S+ I
Sbjct: 296 DNQEEEIAEDMFDINYIGPVIEISINVYYILDILNSINSENI----LIF-LNNSNNSIQI 350

Query: 360 RGKD 363
           + ++
Sbjct: 351 KAEN 354


>gi|81251101|gb|ABB69897.1| DNA polymerase III beta chain [Nitrosomonas sp. IWT310]
          Length = 373

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 129/394 (32%), Positives = 204/394 (51%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57
           MK+T+   D+L + L     I+ER++T+P+  +VL+   DG L +  +  EIE+  T  I
Sbjct: 1   MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60

Query: 58  PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114
           P  ++  GS+  TVS   L DI+R L  G+ +   + EN L     I  G S F LQ  P
Sbjct: 61  P-ELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRL----QIVSGKSRFSLQLLP 115

Query: 115 ESEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             +FP      E    SF L   +LK  ++R   AMA +++RYYLNG    I  ED KL 
Sbjct: 116 AEDFPRMVRDNERCDTSFTLTQQMLKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLM 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+   D+  Q  K  +II PRK V E++R L   D  V V +   +I  + 
Sbjct: 174 LVATDTHRLAITSFDLDGQFEKSETII-PRKTVLELIRQLEDSDKPVIVEIYSKKICFHF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290
               +  ++I G+F +++  IP ++  +  +N  +   A+ R +I+SS     + V L++
Sbjct: 233 SDAVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNI 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ KL ++  N +  +A E + + Y+   +D  FN  YL+E+++N+ S     + +    
Sbjct: 293 TNGKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +S  S++ I   D D  N         +VLMPMR
Sbjct: 348 ESMQSAILITLPDDDQFN---------HVLMPMR 372


>gi|114330038|ref|YP_746260.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91]
 gi|114307052|gb|ABI58295.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91]
          Length = 373

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 128/394 (32%), Positives = 205/394 (52%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57
           MK+T+   D+L + L     I+ER++T+P+  +VL+   DG L +  +  EIE+  T  I
Sbjct: 1   MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60

Query: 58  PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114
           P  ++  GS+  TVS   L DI+R L  G+ +   + EN L     I  G S F LQ  P
Sbjct: 61  P-ELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSENRL----QIVSGKSRFSLQLLP 115

Query: 115 ESEFP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             +FP  +   E    SF L   +LK  ++R   AMA +++RYYLNG    I  ED KL 
Sbjct: 116 AEDFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLM 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+   D+  Q  K  +II PRK V E++R L   D  V V +   +I  + 
Sbjct: 174 LVATDTHRLAITSFDLDGQFEKSETII-PRKTVLELIRQLEDSDKPVIVEIYSKKICFHF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290
               +  ++I G+F +++  IP ++  +  +N  +   A+ R +I+SS     + V L++
Sbjct: 233 SDAVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNI 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ KL ++  N +  +A E + + Y+   +D  FN  YL+E+++N+ S     + +    
Sbjct: 293 TNGKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++  S++ I   D D  N         +VLMPMR
Sbjct: 348 ENMQSAILITLPDDDQFN---------HVLMPMR 372


>gi|91205471|ref|YP_537826.1| DNA polymerase III subunit beta [Rickettsia bellii RML369-C]
 gi|122990918|sp|Q1RIS7|DPO3B_RICBR RecName: Full=DNA polymerase III subunit beta
 gi|91069015|gb|ABE04737.1| DNA polymerase III beta chain [Rickettsia bellii RML369-C]
          Length = 379

 Score =  166 bits (420), Expect = 6e-39,   Method: Compositional matrix adjust.
 Identities = 116/379 (30%), Positives = 204/379 (53%), Gaps = 27/379 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N I    ++ L A DGLLE+ ++  ++ ++  I   
Sbjct: 2   LKVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKIGVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G +TVS   L DIV+KL D    S     +LGT  + I+  +  F L + P   FP
Sbjct: 62  VVSEGELTVSTKTLNDIVKKLPD----SELTLTDLGTTGLEITGKNCRFNLFTLPVESFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+++ +    ++E T F+++ +E RY LNGI+ H+  +D +  A +TDGH
Sbjct: 118 VMDNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHV--KDSEFYAASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL---SSKDSSVKVSLSESRIHLNI-ESL 235
           RL+V+ V +  +I     +I+P+K+  EIL+I+    + ++ +++ LS ++I     E++
Sbjct: 176 RLSVSSVVLAEKIEDF-GVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y + IP ++  +L +N       ++R++I++  + +AVKLSLS + L
Sbjct: 235 IMLSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEAL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV----- 341
            ++      G A E +N          Y  E  +DI FN +YL +++  I SD V     
Sbjct: 295 EISAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDLVELYFS 354

Query: 342 -VDDEVVFRLDSSNSSVFI 359
            V   V+ +   S   +F+
Sbjct: 355 SVSAPVLIKFPESPKDIFV 373


>gi|15616641|ref|NP_239853.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132241|sp|P57127|DPO3B_BUCAI RecName: Full=DNA polymerase III subunit beta
 gi|25288588|pir||C84931 DNA-directed DNA polymerase (EC 2.7.7.7) beta chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038704|dbj|BAB12739.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 101/368 (27%), Positives = 203/368 (55%), Gaps = 21/368 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76
            R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S + + G+ T+S   L D
Sbjct: 18  SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRKLLD 77

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I R   + + I     N    +++I  G+S + L + P   FP   +  ++  F + S +
Sbjct: 78  ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK ++E+  F+MA +++RYYLNGI   + + D  L AVATDG+RL +++  +   I    
Sbjct: 135 LKKMIEKIQFSMAKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + +LI+G++P+Y++V+  +
Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            +  + +N   L+Q++ R +I+S  +   V++ + + +  +  DN +   A +  N+ Y 
Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I  N  Y++EI+++I+S     + +   L+++N+S+ I           +N  + 
Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357

Query: 377 FYVLMPMR 384
            YV+M ++
Sbjct: 358 LYVVMLLK 365


>gi|223935962|ref|ZP_03627876.1| DNA polymerase III, beta subunit [bacterium Ellin514]
 gi|223895184|gb|EEF61631.1| DNA polymerase III, beta subunit [bacterium Ellin514]
          Length = 369

 Score =  166 bits (419), Expect = 7e-39,   Method: Compositional matrix adjust.
 Identities = 114/393 (29%), Positives = 204/393 (51%), Gaps = 33/393 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T+ +  ++  L     ++  + T+P+  +VL++A    LE  A+  ++ I+  + A+
Sbjct: 1   MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+ TV    L+ IVR+L +   +I   ++N      +I  G S + +      EFP
Sbjct: 61  VKEGGATTVPVKKLFGIVRELNNPEIEIEVDEKNT----CSIRSGSSFYKINGLSADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +      L    +K ++++T FA++T+E RY LNGIF  + E   KL  VATDG 
Sbjct: 117 PLPKFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEH--KLTMVATDGR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-----S 234
           RLA+ + ++          IVP KAV E+ R+L+ K   V++  SE++    ++     S
Sbjct: 175 RLALVDEEVDVTEKSQGEFIVPAKAVNELNRLLTDK-GEVEIRYSENQAAFTLKDEKGFS 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +LI+G +PNY+ VIP    + + +       A+ R  IM+S +  +VKL+ S + 
Sbjct: 234 ILIISKLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNN 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T ++P++G+A ES+ + Y    M I FN KY+++ ++ +S+DE+  +     +D  +
Sbjct: 294 LAITANSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALSNDEIFLE----LIDELS 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNA--FYVLMPMRI 385
             V               K+N    YV+MPMR+
Sbjct: 350 PGVV--------------KINGPFLYVVMPMRL 368


>gi|30248033|ref|NP_840103.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718]
 gi|30179918|emb|CAD83913.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718]
          Length = 373

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 124/394 (31%), Positives = 204/394 (51%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAI 57
           MK+T+   D+L + L     I+ER++T+P+  + L++  +G L +  +  EIE   T  I
Sbjct: 1   MKLTITDRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGQLTLVTTDLEIEAEATSNI 60

Query: 58  PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114
           P  ++  G++  TVS   L DI+R L  GA I   + EN L     I  G S F LQ  P
Sbjct: 61  P-ELENQGALQTTVSVRKLQDILRALPSGAAIELTRSENRL----QIVSGKSRFSLQLLP 115

Query: 115 ESEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             +FP      E    ++ LA  VLK  ++R   AMA +++RYYLNG+   I  ED KL 
Sbjct: 116 AEDFPRMIRDSEPCSATYTLAQRVLKKHLQRVAHAMAQQDLRYYLNGMLLLI--EDNKLT 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRL +  +D+     K  +I VPRK V E++R L   D  V V +   ++    
Sbjct: 174 LVATDTHRLGITSIDLDGNFEKSETI-VPRKTVLELIRQLEDSDKPVIVEIYPKKVCFRF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290
               +  ++I G+F +++  IP ++  +  VN  +   A+ R +I+SS     + V L++
Sbjct: 233 SDAVLVSKVISGKFLDFRRAIPQTSVFQFDVNRLDFLHALQRTAIISSSNDLFRNVHLNI 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ KL ++  N +  +A E +++ Y+   +D  FN  YL+E+++N+ S     +++    
Sbjct: 293 TNGKLNISAKNKEQEEAQEEIDIVYSNETIDTSFNIVYLMEVLNNLDS-----EQIRCSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +S  S++ I   D +            +VLMPMR
Sbjct: 348 ESMQSAILITLPDDEQFK---------HVLMPMR 372


>gi|21672305|ref|NP_660372.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|232008|sp|P29439|DPO3B_BUCAP RecName: Full=DNA polymerase III subunit beta
 gi|144150|gb|AAA73150.1| dnaN [Buchnera aphidicola]
 gi|2827015|gb|AAC38107.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|21622904|gb|AAM67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 366

 Score =  165 bits (418), Expect = 9e-39,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 211/385 (54%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++   + + L    R++ +  + P+  ++L+Q  DG L +  +  EIE+   I   
Sbjct: 1   MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + G  T+S   + +I R L + ++I    +N+   ++ IS  +SN+ L +     FP
Sbjct: 61  TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNK---KMYISSENSNYILSTLSADTFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +Y+  F+++S++LK ++E+T F+M  +++RYYLNG+     ++D  L +VATDG+
Sbjct: 118 NHQNFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLE--KKDKFLRSVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +   I    SII+P KAV E+L++L+++   + + +  + I +  ++L  + 
Sbjct: 176 RLAISYTQLKKDI-NFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++V+       +  N   L++++ RV+I++  +   +++ + + K  +  
Sbjct: 235 QLIEGEYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +   + Y    ++I  N  YLL++I+NI S     + +   L+ S SS+ I
Sbjct: 295 DNQEEETAEDLFEIDYFGEKIEISINVYYLLDVINNIKS-----ENIALFLNKSKSSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++  S        NA+ V++  R
Sbjct: 350 EAENNSS--------NAYVVMLLKR 366


>gi|219681400|ref|YP_002467785.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471073|ref|ZP_05635072.1| DNA polymerase III beta chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624243|gb|ACL30398.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 202/368 (54%), Gaps = 21/368 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76
            R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S + + G+ T+S   L D
Sbjct: 18  SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVATIQLSTEHISGTATISGRKLLD 77

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I R   + + I     N    +++I  G+S + L + P   FP   +  ++  F + S +
Sbjct: 78  ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK ++E+  F+M  +++RYYLNGI   + + D  L AVATDG+RL +++  +   I    
Sbjct: 135 LKKMIEKIQFSMGKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + +LI+G++P+Y++V+  +
Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            +  + +N   L+Q++ R +I+S  +   V++ + + +  +  DN +   A +  N+ Y 
Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I  N  Y++EI+++I+S     + +   L+++N+S+ I           +N  + 
Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357

Query: 377 FYVLMPMR 384
            YV+M ++
Sbjct: 358 LYVVMLLK 365


>gi|162456447|ref|YP_001618814.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56']
 gi|161167029|emb|CAN98334.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56']
          Length = 376

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 106/391 (27%), Positives = 190/391 (48%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + + + D+L L+     + ++K+ +P   +VLL A    + + A+   + +TG   A 
Sbjct: 1   MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTGQTHAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V A  L + V+ + DG  I         T +        + L   P SEFP 
Sbjct: 61  IKTGGTVAVPARDLLERVKAMPDG-PIQITTTEGAHTSLKAVGSPRRYTLPGLPGSEFPQ 119

Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    S EL    L  L+ RTHF+++T+E R ++N   F    + +++  V TDGH
Sbjct: 120 LPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGDRVRM--VTTDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSS-VKVSLSESRIHLNIES 234
           RL+  E  +    A   ++++P KA+ E+ R+     + K++  V ++ S      NI  
Sbjct: 178 RLSKMEATVSGSSATA-TMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIAG 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +  SV+L+D +FP YQ VIP   ++ +R       +A+  +++ ++ R   VKLS++   
Sbjct: 237 MQFSVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPGT 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T ++PD G   + + V Y+   + I FN KY L+++ +I      D+EV+  +    
Sbjct: 297 LRITSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASID-----DEEVILGISGEL 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               IR        ++ N+ +   V+MPMRI
Sbjct: 352 DPAVIR------PGSESNQQSYVAVIMPMRI 376


>gi|311087504|gb|ADP67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 202/368 (54%), Gaps = 21/368 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76
            R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S + + G+ T+S   L D
Sbjct: 18  SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTTTISGRKLLD 77

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I R   + + I     N    +++I  G+S + L + P   FP   +  ++  F + S +
Sbjct: 78  ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK ++E+  F+M  +++RYYLNGI   + + D  L AVATDG+RL +++  +   I    
Sbjct: 135 LKKMIEKIQFSMGKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + +LI+G++P+Y++V+  +
Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            +  + +N   L+Q++ R +I+S  +   V++ + + +  +  DN +   A +  N+ Y 
Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I  N  Y++EI+++I+S     + +   L+++N+S+ I           +N  + 
Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357

Query: 377 FYVLMPMR 384
            YV+M ++
Sbjct: 358 LYVVMLLK 365


>gi|11320901|gb|AAG33946.1|AF197886_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 201/368 (54%), Gaps = 13/368 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R+I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRLITKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              + G+ TVS+  L DI R   + + ++     EL   +++I    S + L++ P   F
Sbjct: 61  KHYISGNTTVSSRKLLDICRHSLNTSNMNI----ELNANKIHIISNTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S+VLK ++E+THF+M  +++RYYLNG+   +    L +  VATDG
Sbjct: 117 PNHNHFHHISEFYIDSNVLKEMIEKTHFSMGKQDVRYYLNGMLLKMINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL++    +  Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 175 YRLSITHTILKKQQIESFSIIMTRKGIIELYKLLNISKQLIKILIGKNSIRIYIEQLVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FPNY ++     +  + +NCT L+Q++ R +I++  +   V++ + +++  + 
Sbjct: 235 AQLIEGIFPNYDSLFLNKTNNGIILNCTLLKQSLLRTAILTHEKFCGVEIHIKNNQFTVL 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+++++ISS       ++  L++SN+S+ 
Sbjct: 295 SDNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISS-----QNIILFLNNSNNSIQ 349

Query: 359 IRGKDKDS 366
           I  ++  S
Sbjct: 350 IEAENDTS 357


>gi|121607006|ref|YP_994813.1| DNA polymerase III subunit beta [Verminephrobacter eiseniae EF01-2]
 gi|121551646|gb|ABM55795.1| DNA polymerase III, beta subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 372

 Score =  165 bits (417), Expect = 1e-38,   Method: Compositional matrix adjust.
 Identities = 112/383 (29%), Positives = 195/383 (50%), Gaps = 28/383 (7%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIPASVDVCGSI 67
           +L  L     I+ER++T+P+  +VL++     L++  S  EI+I  T  +      C + 
Sbjct: 11  VLAALQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGDTGECMT- 69

Query: 68  TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-Y 126
           T+S   L DI+R +     +S   +    + + +  G S F L S P  +FP  +E   +
Sbjct: 70  TMSVRKLIDILRTMPGEQTVSLESDQ---SRLILKAGKSRFTLHSLPGQDFPLVQESAAF 126

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
              F +    LK+L+ +  F MA ++IRYYLNGI F    + L L  +ATDGHRLA A  
Sbjct: 127 GPVFSVPQKTLKSLLGQVSFTMAVQDIRYYLNGILFVAEGQTLSL--IATDGHRLAFACA 184

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLI 242
            +  Q+ K   +I+PRK V E+ R+LS  D      +++  + ++       +    +L+
Sbjct: 185 TLDVQVPKQ-EVILPRKTVLELQRLLSDADGDNRPHIEMQFASNQAKFTFGGMEFVTKLV 243

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           +G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L+L    L +   N 
Sbjct: 244 EGKFPDYNRVIPKNHHNCVTLGRAALLTSLQRTAIMTSDKFKGVRLNLEPGALRVASSNA 303

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +  +A++ ++V Y    ++I FN  YL++ + N+  D V   ++ F   +S++ + I   
Sbjct: 304 EQEEAVDELDVDYAGDNIEIGFNVTYLIDALANMEQDMV---QLAFADGNSSALLTIPAN 360

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
           D           N  YV+MPMRI
Sbjct: 361 D-----------NFKYVVMPMRI 372


>gi|219681956|ref|YP_002468340.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621689|gb|ACL29845.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085761|gb|ADP65843.1| DNA polymerase III beta chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086338|gb|ADP66419.1| DNA polymerase III beta chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311086913|gb|ADP66993.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  164 bits (416), Expect = 2e-38,   Method: Compositional matrix adjust.
 Identities = 100/368 (27%), Positives = 202/368 (54%), Gaps = 21/368 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76
            R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S + + G+ T+S   L D
Sbjct: 18  SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRKLLD 77

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I R   + + I     N    +++I  G+S + L + P   FP   +  ++  F + S +
Sbjct: 78  ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK ++E+  F+M  +++RYYLNGI   + + D  L AVATDG+RL +++  +   I    
Sbjct: 135 LKKMIEKIQFSMGKQDVRYYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + +LI+G++P+Y++V+  +
Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            +  + +N   L+Q++ R +I+S  +   V++ + + +  +  DN +   A +  N+ Y 
Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I  N  Y++EI+++I+S     + +   L+++N+S+ I           +N  + 
Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357

Query: 377 FYVLMPMR 384
            YV+M ++
Sbjct: 358 LYVVMLLK 365


>gi|148244171|ref|YP_001218865.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146325998|dbj|BAF61141.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 367

 Score =  163 bits (413), Expect = 3e-38,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 198/386 (51%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +   ++LE L     +IE+K T+P+  HVL+Q  + LL +  +  EIEI  +    
Sbjct: 1   MNIQLRVKELLEPLQTVISVIEKKQTLPILAHVLIQLENNLLTLTTTDMEIEIKTSQIIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                S TV A  L +I++KL +   I F   N   +++ I    ++F L +F   +FPS
Sbjct: 61  NKEEISFTVYAKDLINIIKKLPENTIIKFIINN---SKIYIKVNKNSFELNTFRHQDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +   +  +   +LKNL+E+T F+M  ++IR YLNG++F IN+ +  +  V TDGHR
Sbjct: 118 LPKIKNKKNITIKRKILKNLIEKTSFSMGNQDIRAYLNGLYFEINKNN--IVVVTTDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           L++ ++          ++I+PRK++ E  ++L+  +   V +  S +  +L+  + ++  
Sbjct: 176 LSIGKIKQANNSLNKKTVILPRKSIIEFTKLLNKNEHEEVNIYTSNNYFYLSTNNTTIIS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FPNY  VIP   +  + +N  +   ++ + SI      + VKL   + +L +  
Sbjct: 236 KLINSKFPNYLPVIPTDFNNTIIINRLDFLNSLQQASIFVEEHTKGVKLIFKNSQLYI-F 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G+A   +        ++I FN  YL+ I++ ++++E+             + +  
Sbjct: 295 SNSERGQAKTQIKTKNFNKKIEIAFNINYLISILEKLNTNEI-------------NMIIP 341

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            GK+K    N  N     Y++MPMR+
Sbjct: 342 NGKNKSCLLNSINDDIYQYIVMPMRL 367


>gi|206891136|ref|YP_002247870.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743074|gb|ACI22131.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 368

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 103/342 (30%), Positives = 180/342 (52%), Gaps = 9/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + +++  I E L     I+E+K+ +PV  H L+   +  + I A+  E  +   + A 
Sbjct: 1   MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLETAVKQPLEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   + A   Y+IV++L +  +I   ++      + I  G SNF L S   SEFP 
Sbjct: 61  VLEIGKACIPARKFYEIVKELDEDIEIMLLEQ-----WIKIQSGRSNFRLASLDPSEFPV 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        L+   L   +E+T +A    + RY LNG+ F I +E  +   V TDGHR
Sbjct: 116 WPQIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQI-KEPAEFNVVGTDGHR 174

Query: 181 LA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA   A V+ ++ I     +I+ +K++ E+ + LS  ++ V + + ++ +   I+ ++  
Sbjct: 175 LAHFKATVEDISSIEGEKKVILSKKSLNELRKFLSDTET-VSIHIGKTHVMCEIDGINFL 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I+G +P+Y+ VIP  NDK   V+  +L  ++ RVS++S  R  AVK     D L ++
Sbjct: 234 TRMIEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLIIS 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
             +P++G+A + + V Y   P  I FN +YL+E ++ I+SD+
Sbjct: 294 SSDPEIGEARDELTVDYQGEPFIIGFNARYLIEALERITSDK 335


>gi|157803823|ref|YP_001492372.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel]
 gi|157785086|gb|ABV73587.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel]
          Length = 379

 Score =  163 bits (413), Expect = 4e-38,   Method: Compositional matrix adjust.
 Identities = 112/355 (31%), Positives = 193/355 (54%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  +IE++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKMLVQSLGFASSVIEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           V   G +TVS   L D+VRKL D    S     +LGT  + I   +  F L + P S FP
Sbjct: 62  VVSEGELTVSTKTLNDVVRKLSD----SELTLTDLGTTGLEIKGKNCTFNLFTLPVSSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        SF+++ +    ++E T F+++ +E RY LNG++ HI  +D +  + +TDGH
Sbjct: 118 AMDSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHI--KDKEFYSASTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESL 235
           RL+++ V +  QI     +I+P+K+  EIL+I+      +  ++V LS ++I     E+ 
Sbjct: 176 RLSISWVTLEKQIKNF-GVILPQKSAEEILKIVKDPKNINQDIEVLLSSNKIKFICNENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M  +LIDG FP+Y   IP S+  +L +N      ++DR++I++  + +AVKL LS + L
Sbjct: 235 IMLSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIDRIAIITVEKFRAVKLLLSRETL 294

Query: 296 CMTVDNPDMGKAIESMNV---------YYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++      G A E +N          Y ++  + I FN +YL +++  + SD V
Sbjct: 295 EISAVGEARGNAQEVINSSQAKESFYEYNSDESLAIGFNPQYLDDVLKAVKSDLV 349


>gi|11320899|gb|AAG33945.1|AF197885_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 97/368 (26%), Positives = 199/368 (54%), Gaps = 13/368 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGILSLTATNLEIELIANIQLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              + G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  THYISGNTTVSSRKLLDICRHSLNTSNINI----ELNANKIHIISNTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S +LK+++E+THF+M  +++RYYLNG+   +    L +  VATDG
Sbjct: 117 PNHNHFHHISEFCIDSHILKDMIEKTHFSMGKQDVRYYLNGMLLEMINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL +    +  Q  +  SI++ RK + E+ ++L+     +++ + ++ I + IE L  +
Sbjct: 175 YRLGITHTLLKQQQIESFSIVMTRKGIIELYKLLNISRQLIRILIGKNSIRIYIEQLVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY ++     +  + +NC  L+Q++ R +I++  +   V++ +  ++  + 
Sbjct: 235 AQLIEGKFPNYNSIFLKKKNNAIILNCALLKQSLLRAAILTHEKFCGVEIHIKKNQFTVL 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+++++ISS     + ++  L++SN+S+ 
Sbjct: 295 SDNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISS-----ENILLFLNNSNNSIQ 349

Query: 359 IRGKDKDS 366
           I  ++  S
Sbjct: 350 IEAENDTS 357


>gi|11320903|gb|AAG33947.1|AF197887_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 99/368 (26%), Positives = 199/368 (54%), Gaps = 13/368 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGVLSLTATNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              + G+ TVS+  L DI R   + + ++     EL   +++I    S + L++ P   F
Sbjct: 61  THYISGNTTVSSQKLLDICRHSLNSSNMNI----ELDANKIHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S+++K ++E+THF+M  +++RYYLNG+   +    L +  VATDG
Sbjct: 117 PNHNHFHHISEFYIDSNIIKEMIEKTHFSMGKQDVRYYLNGMLLEMINNSLHM--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL +    +  Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 175 YRLGITHTLLKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY +V     +  + +NC  L+Q++ R +I++  +   V++ + +++  + 
Sbjct: 235 AQLIEGKFPNYDSVFLTKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + +   L++SN+S+ 
Sbjct: 295 SDNQEEETAEDTFNINYIGPSIKISINVYYMLDILNSISS-----ENIFLFLNNSNNSIQ 349

Query: 359 IRGKDKDS 366
           I  ++  S
Sbjct: 350 IEAENDTS 357


>gi|23007031|ref|ZP_00049078.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 233

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 83/200 (41%), Positives = 123/200 (61%), Gaps = 4/200 (2%)

Query: 146 FAMATEEIRYYLNGIFFHIN---EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
           FA++TEE RYYLNG++ H     E    L  VATDGHRLA A +        MP II+PR
Sbjct: 6   FAISTEETRYYLNGVYLHAPDGAERAEGLVGVATDGHRLARARLPRPEGAEGMPGIILPR 65

Query: 203 KAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261
           K V EI ++       + +V+LS S+I +  +  +++ +LIDG FP+Y+ VIP  N   L
Sbjct: 66  KLVTEIGKLADGDGGPAFEVALSPSKIRIGRDDTTLTSKLIDGTFPDYERVIPRDNPHTL 125

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321
            ++   L  A+DRV+ ++S R +AVKL+L +D++ +T +NPD G+A E  +  ++  PM 
Sbjct: 126 ALDGKALAPALDRVTTIASERGRAVKLALDADRIVLTQNNPDAGEATEEADAKFDGAPMQ 185

Query: 322 ICFNYKYLLEIIDNISSDEV 341
           I FN KYL EI+  + S+ V
Sbjct: 186 IGFNGKYLAEILALLDSEHV 205


>gi|145588191|ref|YP_001154788.1| DNA polymerase III subunit beta [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046597|gb|ABP33224.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score =  163 bits (412), Expect = 5e-38,   Method: Compositional matrix adjust.
 Identities = 115/390 (29%), Positives = 209/390 (53%), Gaps = 29/390 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           +   R  +L+ L     I+ER++T+P+  ++L + N   +   ++  EI+IT      V 
Sbjct: 4   VNTSRDSLLKPLQVVSGIVERRHTLPILANLLFKKNGEKVSFISTDIEIQITTNANFGVG 63

Query: 62  --DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             DV  + TV+A  L DI+R L +G      K+N +     +  G S F LQ+   +EFP
Sbjct: 64  SEDV--TTTVAARKLLDILRALPEGEVSLNLKDNRM----VVQSGKSRFSLQTLSATEFP 117

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +   E   ++ +     + L+ + HF+MA ++IRYYLNG+   +  E  ++ AVATDG
Sbjct: 118 VMQSVGEVTAAWSMTQKSFRQLISQVHFSMAQQDIRYYLNGMLLVV--EGKEVVAVATDG 175

Query: 179 HRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           HRLA + V++    +   +   II+PRK + E   +L   D S+++SL+ +++  +   +
Sbjct: 176 HRLAFSRVELTEAPSGSGQRQEIIIPRKTILECQHLLEDSDESLEISLTANQVKFSFGDI 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +L++G+FP++Q VIP  +   L V    L+ A+ R +I+++ + + V+ SLS +++
Sbjct: 236 ELISKLVEGKFPDFQRVIPKGHKNTLVVGRDALQAALQRAAILTTDKFKGVRFSLSPNRI 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   N +  +A E +   Y+   ++I FN  YLL+++ N+      ++++   L  +NS
Sbjct: 296 TIQSTNAEQEEAQEEIETEYSGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDANS 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +      S+N K       YV+MPMRI
Sbjct: 351 SAVV--TLPGSENFK-------YVVMPMRI 371


>gi|94967033|ref|YP_589081.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549083|gb|ABF39007.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 371

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 120/387 (31%), Positives = 196/387 (50%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV + D+L+ L     ++ERK TIP+  + L +A    L I A+  ++ +  A    
Sbjct: 1   MEITVSKFDLLKELTATQGVVERKTTIPILSNFLFEAVGDKLNITATDLDLSLRTACVTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T+ A  LYD V+ L DG       EN     VNI  G SN  +     S FPS
Sbjct: 61  VKKEGSCTIPARKLYDYVKLLPDGDITIKLLENHW---VNIRSGRSNTKMVGMARSNFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     ++ ++ L+ ++ +T FA++ EE RY LNG    +  E L    V+TDGHR
Sbjct: 118 LPVFPTTGMVKIPAAALRTMIGKTIFAISNEESRYTLNGALMVLKPESL--IMVSTDGHR 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           LA +       +I+     +VP+KA+ E+  +L S ++  ++ +  ES +   I    ++
Sbjct: 176 LAHIERQGGKFEISGEMKTLVPKKAMSELYSLLQSTETEDIEFAKDESTLFFRIGGRLLT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R + G+FPNY+ V+P  NDK + +       A+ RV+  +  R QA+K+ L  D+L ++
Sbjct: 236 SRQLTGQFPNYEAVLPKDNDKSVTIRTDEFMAAILRVAQFADERSQAIKVRLEKDELRIS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + + G++ +S+   Y    + I FN +YL+E +    +DEV       RL+  N+   
Sbjct: 296 SSSTETGESEDSIVTAYTGEVVTIGFNSQYLIEFLKAAGADEV-------RLEFKNAQS- 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             G+ +    + + K    YV+MPMRI
Sbjct: 348 -AGQLRPEATSDEFKYR--YVVMPMRI 371


>gi|323939115|gb|EGB35329.1| DNA polymerase III beta subunit protein [Escherichia coli E482]
          Length = 232

 Score =  162 bits (410), Expect = 9e-38,   Method: Compositional matrix adjust.
 Identities = 92/249 (36%), Positives = 150/249 (60%), Gaps = 17/249 (6%)

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV  + I  Q     
Sbjct: 1   MKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVCSMPI-GQSLPSH 57

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           S+IVPRK V E++R+L   D+ ++V +  + I  ++     + +L+DG FP+Y+ V+P +
Sbjct: 58  SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKN 117

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T +NP+  +A E ++V Y+
Sbjct: 118 PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYS 177

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              M+I FN  Y+L++++ +       + V   L  S SSV I  +D  S+       +A
Sbjct: 178 GAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI--EDAASQ-------SA 223

Query: 377 FYVLMPMRI 385
            YV+MPMR+
Sbjct: 224 AYVVMPMRL 232


>gi|270158401|ref|ZP_06187058.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968]
 gi|289163355|ref|YP_003453493.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150]
 gi|269990426|gb|EEZ96680.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968]
 gi|288856528|emb|CBJ10323.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150]
          Length = 367

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/387 (29%), Positives = 204/387 (52%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
            + T+++ D+L  L      +++K ++ +  +  L+ +DGLL I A+  EIEI+  +   
Sbjct: 2   FEFTIKKEDLLPPLLAVAGAVDKKQSLAILSNFFLKLSDGLLNITATDLEIEISAQVACV 61

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S    GSITV A    DI+R L D         N L T   +  G S+F L + P   +P
Sbjct: 62  SKHSSGSITVPAKKFIDIIRSLDDETSPDVLVNNSLLT---LKQGRSSFKLTTLPAEGYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +++E       L   VL  L++ THFAMA +++R +LNG+F    E +L + AVATDGH
Sbjct: 119 LSEDECNEVELTLPRLVLLKLLQSTHFAMAQQDVRVFLNGLFLDF-EPNL-ISAVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           R+A+      + I+    +++P+K V E+LRIL+   D  + ++  +S   L        
Sbjct: 177 RMAICRYQ-CSNISD-KKLLLPKKGVQELLRILNYIDDEEILLTAGKSHFKLITRQFVFI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+  FP Y   IP + DK + ++C+ L++++ R+ I++  + +AV L L    L + 
Sbjct: 235 SKLIEARFPPYTKAIPRNQDKHILIDCSVLKRSLSRIVILAHEKSKAVMLHLQPGMLTLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +N +  +A+ES+        + I  N  YLL+++ +       + ++   L +++SS+ 
Sbjct: 295 ANNNEQEEAVESLIAETQGDELKIGLNATYLLDVLSHFG-----EGQIRLSLSNTDSSIL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     +S N++D +    Y++MPM+I
Sbjct: 350 I-----ESLNDEDYQ----YIIMPMKI 367


>gi|225873788|ref|YP_002755247.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225791219|gb|ACO31309.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 373

 Score =  162 bits (409), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 115/388 (29%), Positives = 197/388 (50%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I+V R D+L  L  +  ++ERK TIP+  + L++A++  L I A+  +  +  +  A 
Sbjct: 1   MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T+ A  LYD V+ L +G       +N     V I  G SN  +     + FP 
Sbjct: 61  VKKPGSCTIPARKLYDYVKLLPEGDVSIKLMDNHW---VQIRSGRSNTKMVGMARANFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +  + L+NL+ +T FA++ EE RY LNG    +  E + +  VATDGHR
Sbjct: 118 VPEFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAESIAM--VATDGHR 175

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSM 237
           LA  E   +    +      ++PRKA+ E+  +L + D+ SV+ +  +S +   I    +
Sbjct: 176 LAHIEKSGENFPSMGAEKKTLIPRKALSELQSLLGNTDAESVEFADDDSTLFFRIGHRVL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + R + G+FPNY+ V+P  N+K   V   +L +++   S  +  R  A+K+ L  ++L +
Sbjct: 236 TSRKLTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D G++ + +   Y+  P+ + FN  YLL+ +  I +      EV      + S+ 
Sbjct: 296 SASSTDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGN----TGEVRLEFKDAQSAG 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R +D      +D K    Y++MPMRI
Sbjct: 352 QMRPED----GQEDYKYR--YIIMPMRI 373


>gi|15604284|ref|NP_220800.1| DNA polymerase III subunit beta [Rickettsia prowazekii str. Madrid
           E]
 gi|6225282|sp|Q9ZDB3|DPO3B_RICPR RecName: Full=DNA polymerase III subunit beta
 gi|3860976|emb|CAA14876.1| DNA POLYMERASE III, BETA CHAIN (dnaN) [Rickettsia prowazekii]
 gi|292572033|gb|ADE29948.1| DNA polymerase III beta chain [Rickettsia prowazekii Rp22]
          Length = 381

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 123/399 (30%), Positives = 216/399 (54%), Gaps = 33/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  IIE++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLMQSLGFARSIIEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITV+   L DIVRK  D        E E+ T++ I   +  F L + P S FP+
Sbjct: 62  VLNEGEITVATQTLSDIVRKFPDSELT--LTEIEI-TQLEIKGQNCKFNLFTLPVSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   SF+++ +    ++E T F+++ +E RY LNGI+ HI  +D +  A +TDG+R
Sbjct: 119 MDSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHI--KDKEFFAASTDGYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS---SVKVSLSESRIHL--NIESL 235
           L+++ + +  +I     +I+P+K+  EIL+I+    +    +++ LS ++I    N  ++
Sbjct: 177 LSISWITLEEKIKNF-GVILPQKSAEEILKIVKDPKNIHEDIEILLSSNKIKFICNENTI 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +S +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS   L
Sbjct: 236 LLS-KLIDGTFPDYSAFIPKSSVSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRKIL 294

Query: 296 CMTVDNPDMGKA---------IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A          ES   Y ++  + I FN +YL +++  I SD V   E+
Sbjct: 295 EISAVGEARGTAKEIITASQDKESFYEYNHDESLVIGFNPQYLEDVLKAIKSDIV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F   S+++ V I    K  +N KD      +V+MP+++
Sbjct: 352 YFSDISASAPVLI----KFPRNPKD-----IFVIMPVKV 381


>gi|33519499|ref|NP_878331.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus]
 gi|33517162|emb|CAD83544.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus]
          Length = 367

 Score =  161 bits (408), Expect = 1e-37,   Method: Compositional matrix adjust.
 Identities = 118/388 (30%), Positives = 201/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   VER+DI   L     II+ ++ +P+  H+LL   D  L I A+  EIEI   I   
Sbjct: 1   MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQIS-FFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +  S+TV  +  ++I + L + ++I    +EN       IS G SNF L   P  +F
Sbjct: 61  KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQENRFL----ISSGCSNFVLSILPVLDF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  K+ E      +   VLK +++ T F+M  ++ RYYLNGI   +  E   +  V+TDG
Sbjct: 117 PKVKKYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGI--CLKTEKNTISMVSTDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL++ EV     +    S+I+PRK V EI  +L +    VK+ +  + I++ + +  + 
Sbjct: 175 YRLSMCEVT-SKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIR 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LID EFP+Y+ +          ++   L+ A+ R SI+S+ +++ V   L+S++L +T
Sbjct: 234 SKLIDSEFPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357
            DN     + E + + ++   + I FN  YLL++I+      VVD +++ F L ++ SSV
Sbjct: 294 TDNFKEETSEEILKILFSYENISISFNVDYLLDVIN------VVDSQMLKFSLINTVSSV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G  K           + Y++MP+++
Sbjct: 348 QIEGVPK--------YYGSIYIIMPVKV 367


>gi|182412775|ref|YP_001817841.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1]
 gi|177839989|gb|ACB74241.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1]
          Length = 374

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 100/351 (28%), Positives = 182/351 (51%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R      L     ++  K T+P+  +VL++A    + +  +  ++ I   I A 
Sbjct: 1   MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T+    L  IVR+L +   +    +     +V ++ G SNF +    + EFP 
Sbjct: 61  VKETGAVTLPVKRLATIVRELPN---VDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF L  S L ++++   +A +T+E RY LNG++F  N +D KL  VATDG R
Sbjct: 118 LPEFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYF--NFKDGKLSLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232
           LA+   ++        +II+P K V E++R+L  K   +K++ ++ R    I        
Sbjct: 176 LALVSKELEVPADSAGAIILPAKTVSELMRLLD-KGEKLKINFNDRRAAFQIATDKDSSG 234

Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ES+ +  ++++G +PNYQ V+P    + +++      Q V R +++ S +  +VK+ L
Sbjct: 235 LVESVYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIKL 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           SS+ L +T  +PD G+A ESM + Y+   + + FN  ++++ +  ++ DE+
Sbjct: 295 SSNLLEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRALTKDEI 345


>gi|225163912|ref|ZP_03726204.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801489|gb|EEG19793.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 374

 Score =  161 bits (407), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 103/359 (28%), Positives = 185/359 (51%), Gaps = 19/359 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R      L     ++  K T+P+  +VL++A    + +  +  ++ I   I A 
Sbjct: 1   MKFKINRDHFSNGLAQVLNVVGSKATMPILSNVLIEAEKDYISLTTTNLDLGIRCKIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+    L  IVR+L     ++F  +     +V ++ G S F +    + EFP 
Sbjct: 61  VKEPGSVTLPVKRLATIVRELPS-VDVAF--DGAANHQVKLTSGGSTFKIMGIGKDEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF L+   L  +++   +A +T+E RY LNG++F  N  D KL  VATDG R
Sbjct: 118 LPEFGDDRSFNLSQEELTTMLKSVSYAQSTDETRYILNGVYF--NFRDAKLTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232
           LA+   ++        +II+P K VGE+LR+L  K + +K++ ++ R    I        
Sbjct: 176 LALTSKEMEIPEESAGAIILPAKTVGELLRMLG-KGAKIKIAFNDRRASFEISTEGEDTG 234

Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             +S+ +  ++++G +PNYQ VIP    + +++      + V R +++ S +   V++ L
Sbjct: 235 LVDSIYLYSKVVEGNYPNYQQVIPKETHQRIKLERELFAECVHRAALVCSDKSNQVRIKL 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV---VDDEV 346
           S++ L +T  +PD G+A ESM + Y+   + + FN  ++++ +  ++ DEV   + DEV
Sbjct: 295 STNLLEITAQSPDFGEAHESMAIAYSGPDLQVAFNPAFVMDPLKALTKDEVFFELKDEV 353


>gi|11320905|gb|AAG33948.1|AF197888_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  160 bits (406), Expect = 2e-37,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 202/386 (52%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     +  L    R + +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIHNLQKINRFVTKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
            +   G ITVS+  + DI R   + + I      EL   +++I    S + L + P   F
Sbjct: 61  KNYTSGHITVSSRKILDICRNSLNSSNIKI----ELCDNKIHIISDKSQYILTTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S+ LK ++E+THF+M  +++RYYLNG+   +    L  C VATDG
Sbjct: 117 PNYHHFHHIAEFCIDSNTLKEMIEKTHFSMGKQDVRYYLNGMLLEMINNSL--CMVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL + +  +  Q  +  SI++ R+ + E+ ++L+    S+K+ + ++ I + IE    +
Sbjct: 175 YRLGITQTLLTTQKIESFSIVMTRRGIIELYKLLNVSRQSIKILIGKNSIRIYIEQFIFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY ++     +  + +NC  L++++ R +I++  +   V++ + +++    
Sbjct: 235 AQLIEGKFPNYDSLFLTKKNNGIILNCMLLKKSLLRAAILTHEKFCGVEIHIQNNQFKAL 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 295 SDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I           +N  +  Y++M ++
Sbjct: 350 IEA---------ENDASTIYIVMLLK 366


>gi|319778797|ref|YP_004129710.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9]
 gi|317108821|gb|ADU91567.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9]
          Length = 380

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 111/378 (29%), Positives = 197/378 (52%), Gaps = 30/378 (7%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS----------ITV 69
           I+E+K ++P+  HVL++     L++  S   I+IT  +    D   S          + V
Sbjct: 21  IVEKKASLPILSHVLIKKGPQSLDLVTSDLSIQITTKLRFGEDDSSSAPVDDAEIIKVAV 80

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVY 128
            A  L +I+R +  GA I   + N   +++ +S  DS F LQ+ P +++P    + E+  
Sbjct: 81  PALKLQNIIRVMPTGAMI---EANLNESKITLSADDSRFTLQTLPGADYPDANFDTEWKV 137

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
            F +    LK ++     AMA  +IRYYLNG+   I  E   L  VATDGHRL+ A  + 
Sbjct: 138 RFSIDVQALKKILNLVSCAMAQSDIRYYLNGMLLVI--EPGMLHGVATDGHRLSHA-AET 194

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
           +  +     +I+PRK V ++LR+L    + V+VS+S   I      + +  + ++G+FP+
Sbjct: 195 IEGVTDQTKVIIPRKTVEQLLRLLDESHNEVQVSVSGRSIQFKFGDIEVLSKQVEGKFPD 254

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           ++ VIP   + E+ +N +     + R +I+ +  ++ ++KL  ++++L ++  N D  ++
Sbjct: 255 FEKVIPKGYNTEIIINRSEFSDNLQRANILVNEDKLHSIKLHFANNRLTISSSNLDQEES 314

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
              +++ YN  P+D+ FN  YLLE++  ++S E V    +     SNSS+ I  K+ D  
Sbjct: 315 KMELDIEYNNNPIDMGFNALYLLEVLSVLNSYENV---TLSMSGESNSSLLISIKEDDQF 371

Query: 368 NNKDNKVNAFYVLMPMRI 385
                     YV+MP+RI
Sbjct: 372 K---------YVVMPLRI 380


>gi|81251073|gb|ABB69876.1| DNA polymerase III beta chain [Nitrosospira sp. NRS527]
          Length = 369

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 27/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT ++   V+
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSV-EDVN 62

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
             G   S+TV A  L DI+R L D  Q++    EN L  +     G S F LQ+ P  +F
Sbjct: 63  PAGEERSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKA----GKSRFNLQTLPVEDF 118

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P   E  E      +    LK+++    +AMA ++IRYYLNG+   +  ED  L  VATD
Sbjct: 119 PKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLM--EDNYLKVVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA A + + A   K   +I+PRK V E+ R+L+  D  V V   ++++     ++ +
Sbjct: 177 GHRLAFALMLLAAPQEKK-EVILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNVML 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG+FP+Y  VIP   +K+  +N   L Q + R SI+S+ + + V+L L+S  L +
Sbjct: 236 VSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +N +  +A E + + Y    +DI FN  YLL+++++++ + V      F   +S++ +
Sbjct: 296 VCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNCETV---RCAFGDANSSALI 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G       N D K    YV+MPMRI
Sbjct: 353 SIPG-------NNDFK----YVVMPMRI 369


>gi|81251069|gb|ABB69873.1| DNA polymerase III beta chain [Nitrosospira sp. GS832]
          Length = 369

 Score =  160 bits (405), Expect = 3e-37,   Method: Compositional matrix adjust.
 Identities = 127/388 (32%), Positives = 209/388 (53%), Gaps = 27/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT ++   V+
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSV-EDVN 62

Query: 63  VCG---SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
             G   S+TV A  L DI+R L D  Q++    EN L  +     G S F LQ+ P  +F
Sbjct: 63  PAGEEHSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKA----GKSRFNLQTLPVEDF 118

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P   E  E      +    LK+++    +AMA ++IRYYLNG+   +  ED  L  VATD
Sbjct: 119 PKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLM--EDNYLKVVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA A + + A   K   +I+PRK V E+ R+L+  D  V V   ++++     ++ +
Sbjct: 177 GHRLAFALMLLAAPQEKK-EVILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNVIL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG+FP+Y  VIP   +K+  +N   L Q + R SI+S+ + + V+L L+S  L +
Sbjct: 236 VSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLRI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +N +  +A E + + Y    +DI FN  YLL+++++++ + V      F   +S++ +
Sbjct: 296 VCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNCETV---RCAFGDANSSALI 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G D D K          YV+MPMRI
Sbjct: 353 SIPGND-DFK----------YVVMPMRI 369


>gi|189485007|ref|YP_001955948.1| DNA polymerase III beta subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170286966|dbj|BAG13487.1| DNA polymerase III beta subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 373

 Score =  160 bits (404), Expect = 4e-37,   Method: Compositional matrix adjust.
 Identities = 115/393 (29%), Positives = 202/393 (51%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  E+ +++  +     +   KNT+P   ++L +A    +++ ++  EI +   I   
Sbjct: 1   MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIKGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G IT+ +    +I+++L    +I   K +E   ++NI  G S F L    ++E+P 
Sbjct: 61  ITEDGGITIPSKRFANIIKELSTDDEIEI-KADETN-QINIKSGKSKFNLMGISKTEYPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +F +   +  +++++  FA + +  RY LNGI+F +   D KL  VATDG R
Sbjct: 119 IPEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFILG--DSKLTMVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNIESLSMS 238
           LA A+ +I     K  +I VP KAV +ILR+L S  +S  +++ +S++RI   I+ +++ 
Sbjct: 177 LAYAKTNITQAEVKGKAI-VPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLL 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-----MSSVRIQAVKLSLSSD 293
             LI+G FPNY+ VIP  +D ++++N  N   AV ++++     +SS R  AVK   S D
Sbjct: 236 STLIEGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++  +  +G     + + Y   P +I FN  ++ EI  +I  DE      +F   +S
Sbjct: 296 LLKISASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSI--DEY---SAIFEFTNS 350

Query: 354 -NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            N +V     D+          N   V+MPMR+
Sbjct: 351 LNPAVIYPETDE----------NYLCVVMPMRV 373


>gi|51473607|ref|YP_067364.1| DNA polymerase III subunit beta [Rickettsia typhi str. Wilmington]
 gi|81610796|sp|Q68WW0|DPO3B_RICTY RecName: Full=DNA polymerase III subunit beta
 gi|51459919|gb|AAU03882.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 381

 Score =  159 bits (402), Expect = 7e-37,   Method: Compositional matrix adjust.
 Identities = 120/399 (30%), Positives = 218/399 (54%), Gaps = 33/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   
Sbjct: 2   LKLIVETKTLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVS   L DIVRKL D ++++  + + +  E  I   +  F L + P S FP+
Sbjct: 62  VLSEGEITVSTQTLSDIVRKLPD-SELTLTELDIMKLE--IKGQNCQFNLFTLPVSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   SF+++ +    ++E T F+++ +E RY LNGI+ HI  +D +  A +TDGHR
Sbjct: 119 MDSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHI--KDKEFFAASTDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRI---LSSKDSSVKVSLSESRIHL--NIESL 235
           L+++ + +  +I     +I+P+K+  EIL+I   L +    +++ LS ++I    N  ++
Sbjct: 177 LSISWITLEEKIKNF-GVILPQKSAEEILKIVKDLKNIHEDIEILLSSNKIKFICNENTI 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +S +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +A+KLSLS   L
Sbjct: 236 LLS-KLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTL 294

Query: 296 CMTVDNPDMGKAIESMNV-------YYNEC--PMDICFNYKYLLEIIDNISSDEVVDDEV 346
            ++      G A E +         Y   C   + I FN +YL +++  + S+ V   E+
Sbjct: 295 EISAVGEARGNAKEIITASQDKESFYEYNCDESLVIGFNPQYLEDVLKAVKSNLV---EL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F   S+++ V I    K  +N KD      +V+MP+++
Sbjct: 352 YFSDISASAPVLI----KFPQNPKD-----IFVIMPVKV 381


>gi|328952218|ref|YP_004369552.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM
           11109]
 gi|328452542|gb|AEB08371.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM
           11109]
          Length = 388

 Score =  159 bits (401), Expect = 9e-37,   Method: Compositional matrix adjust.
 Identities = 102/362 (28%), Positives = 190/362 (52%), Gaps = 25/362 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +E+  +L+  G    +I+R+   P+  H LL+A +  L+I A+  E+  +G  PA 
Sbjct: 1   MKLHIEKDALLQGAGRTQGVIDRRGHTPILSHCLLEAGNNQLKISATDYEVSFSGYYPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G +TV A   Y+I+R+L  G  IS   E+   + + I  GD+ +     P   FP 
Sbjct: 61  VEEEGGLTVPAVSFYNILRELPAGT-ISL--ESTENSNLVIQVGDARYQFLGLPVENFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA--VATDG 178
             + E     EL++SVL  ++E+T F++A ++I+ +L G+      ED ++    V++DG
Sbjct: 118 LPKLENQPMIELSNSVLSEMLEKTIFSIAADDIQPHLTGVLLEKITEDGRIIVRLVSSDG 177

Query: 179 HRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++   E+  + QI    +II+PRK V E+LR++S ++    + + +  I L      
Sbjct: 178 HRLSLIDREIPAIEQINLEKAIIIPRKGVAEMLRLISEEERCA-LGIEKKSIILRQGDKY 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RL+D ++P+Y+ +IP S +  + V        + R+S++S+ + + V + +S   L 
Sbjct: 237 LYIRLLDKKYPDYRRIIPASPEVRITVGRRAFLDVLKRISLLSAEKFKGVIMMVSEGWLD 296

Query: 297 MTVDNPDMGKAIESMNVYYNE-----------------CPMDICFNYKYLLEIIDNISSD 339
           +   NP++G   E + +  N                   P+ + +N +YL+E +  + SD
Sbjct: 297 IRYHNPEIGGGDERLPITVNFLNSEVVAEQERDEETLCLPIRLSYNARYLIEPLSVMQSD 356

Query: 340 EV 341
           E+
Sbjct: 357 EI 358


>gi|260887487|ref|ZP_05898750.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|330837869|ref|YP_004412449.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|260862774|gb|EEX77274.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|329745633|gb|AEB98989.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
          Length = 370

 Score =  159 bits (401), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 208/387 (53%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++++ + +    + I  K   P+   + ++A +  +E+ A+  E+ I   IP+ 
Sbjct: 1   MKFTCHKNELAQAIQLVSKAIANKPQTPILSGIYMEATNNQVELHATDNEMGIISIIPSE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + +S   + +++R+L  G  ++  +E +      I    SNF L S P ++FP+
Sbjct: 61  VEQEGKLVLSGRYMQEVIRRLP-GETVTISQEIDENIS-KIQSAASNFTLLSMPANDFPT 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K  E    F++  +VL++++++T FA +T+E R    G    IN E LK+   AT+ HR
Sbjct: 119 VKRLEDGIRFKIQDNVLRDIIKKTVFACSTDEARPVFTGCQMEINGETLKMA--ATNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSMS 238
           L+V + +++A ++    II+P K + E+LR L+S D  V+V +  S ++     E++ + 
Sbjct: 177 LSVKK-EVIANLSGDLHIIIPAKILNELLRALNS-DMPVEVDVCCSSNQASFQFENVVLM 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCM 297
            RLI+G+FPNY +VIP +    + ++  +   AVDRVS++S S     ++L    +++ +
Sbjct: 235 SRLIEGQFPNYDSVIPKNFATTVTLDTEDFLAAVDRVSLISRSADYNIIRLEFGGNQVHI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           + ++PD+GKA E +    +   ++I FN KY+ +++ NI S         F L+ S  + 
Sbjct: 295 SSNSPDIGKADEIVAASIDGPAVNIAFNAKYVTDVLKNIDS-----KNFRFLLNQSLQAA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +R +D  +           Y++ P+R
Sbjct: 350 AVREEDNPT---------FVYIVTPVR 367


>gi|296131552|ref|YP_003638799.1| DNA polymerase III, beta subunit [Thermincola sp. JR]
 gi|296030130|gb|ADG80898.1| DNA polymerase III, beta subunit [Thermincola potens JR]
          Length = 370

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 200/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  +++++  +  A R +  KN +P+   +L++  +  L + A+  E+ I   +P +
Sbjct: 1   MKFTSNKNNMVYGVQVAQRAVSPKNPLPILSGILMKLKNNNLCLTATDLELGIECTVPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
               GS+ + A  L +IVRKL D   + S  KEN + T   + +  S   +  +   EFP
Sbjct: 61  GSSEGSVVLPAKYLSEIVRKLPDVLIEFSVEKENNVAT---LKYAQSKTTIHGYSADEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   ++ +   + KN++++  FA A +E R    G+ F +  ++L+L  VATD H
Sbjct: 118 LLPSLDGETTYVIKQELFKNMIKQVTFATAADENRPIFTGVLFEVEGDELRL--VATDTH 175

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA  +  +       +    ++P KA+ EI+RI+  ++  VK++ S +++ + ++++ +
Sbjct: 176 RLALRIGAIGSHGYSGEKTGALIPAKALNEIVRIMPPENEEVKITFSNNQVVMELDNIRL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+G+FPNY+ VIP     ++R+N      AV+R S+++      ++L++ +  L +
Sbjct: 236 ISRLIEGQFPNYKQVIPQGCKSKIRLNTREFLDAVERASLLAKDGSNVIRLAVQNHTLII 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF-RLDSSNSS 356
             ++PD+G   E + +        I FN KYL++++       V+D E VF  L  S S 
Sbjct: 296 NSNSPDIGTIHEELPIVLEGEETQIAFNSKYLIDVL------RVIDAEEVFLELTGSLSP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++  + D         N  Y+++P+R
Sbjct: 350 GIVKPVEGD---------NYLYLILPVR 368


>gi|212659782|gb|ACJ36975.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 266

 Score =  158 bits (400), Expect = 1e-36,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 150/263 (57%), Gaps = 7/263 (2%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 4   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 64  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK--MPS 197
           L+ERT FAMA +++RYYLNG+   ++    KL   A+DGH L +   ++    AK     
Sbjct: 121 LIERTAFAMAQQDVRYYLNGLL--VDFPKTKLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   
Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238

Query: 258 DKELRVNCTNLRQAVDRVSIMSS 280
           D+E++V    LR A+ R +I+S+
Sbjct: 239 DREVKVAREVLRDALQRAAILSN 261


>gi|212659786|gb|ACJ36977.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 264

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 85/263 (32%), Positives = 150/263 (57%), Gaps = 7/263 (2%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 4   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 64  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK--MPS 197
           L+ERT FAMA +++RYYLNG+   ++    KL   A+DGH L +   ++    AK     
Sbjct: 121 LIERTAFAMAQQDVRYYLNGLL--VDFPKTKLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   
Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238

Query: 258 DKELRVNCTNLRQAVDRVSIMSS 280
           D+E++V    LR A+ R +I+S+
Sbjct: 239 DREVKVAREVLRDALQRAAILSN 261


>gi|226942153|ref|YP_002797227.1| DNA polymerase III subunit beta [Laribacter hongkongensis HLHK9]
 gi|226717080|gb|ACO76218.1| DnaN [Laribacter hongkongensis HLHK9]
          Length = 377

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 100/343 (29%), Positives = 186/343 (54%), Gaps = 12/343 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VL++ +   L   A+  EI+IT A P  + 
Sbjct: 4   LQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPEPI- 62

Query: 63  VCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             G    +T SA    DI+R + D   ++   E+     + +  G S F LQS P  +FP
Sbjct: 63  -AGPDFRLTTSAKKFSDILRAIPDRTTVTLDHED---GRLTVKAGKSRFNLQSLPADDFP 118

Query: 120 S-TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T+  +    F L     K L+ +  +AMA ++IRYYLNG+    +   +KL  VATDG
Sbjct: 119 LLTQSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKL--VATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A++ +   +     +I+PRK + E+ ++L+  D ++ ++L  +++        + 
Sbjct: 177 HRLAFAQMTLDTPLPAA-EVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVIV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP  NDK   +    L+QA+ R +I+++ + + V+L++ + +L + 
Sbjct: 236 SKVVDGKFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRIQ 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +N +  +A E + + Y    ++I FN  YL +++  +  D +
Sbjct: 296 CNNSEQEEAEEELEIAYGGSGLEIGFNITYLQDVLAALHVDTL 338


>gi|89892748|ref|YP_516235.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51]
 gi|89332196|dbj|BAE81791.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51]
          Length = 385

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 200/389 (51%), Gaps = 29/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  ++  +    + +  KNT+PV   ++++A    L  +A+  EI I   +PA 
Sbjct: 19  MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 78

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESEFP 119
           V+  G + + + L  D+VRKL D        E EL  +V NI + +S+  L+ +   EFP
Sbjct: 79  VEKEGVVVLPSRLFSDLVRKLPD-----VLIELELQNDVINIHYNESDLSLRGYDPEEFP 133

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +F L  S+ K ++++T FA + EE R    G    I +  L+L  +ATD H
Sbjct: 134 LLPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTH 191

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA  +AE+    QI K   II P K +GEI R+L  +D ++ +  ++++I     ++ +
Sbjct: 192 RLAYRIAEISNPEQI-KFQGII-PAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHL 249

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKL 295
             RLI+G+FPNY+ VIP S   ++ ++    + +V+R S+++        +KLS+ +++L
Sbjct: 250 LSRLIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERL 309

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     ++GK  E M V      + I FN K+LL+++  I S     +E+VF L  S S
Sbjct: 310 SID-QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYS 363

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              IR  D           N  Y+ +P+R
Sbjct: 364 PGIIRPVDDP---------NYLYLALPVR 383


>gi|219666073|ref|YP_002456508.1| DNA polymerase III subunit beta [Desulfitobacterium hafniense
           DCB-2]
 gi|219536333|gb|ACL18072.1| DNA polymerase III, beta subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 367

 Score =  158 bits (399), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 118/389 (30%), Positives = 200/389 (51%), Gaps = 29/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  ++  +    + +  KNT+PV   ++++A    L  +A+  EI I   +PA 
Sbjct: 1   MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESEFP 119
           V+  G + + + L  D+VRKL D        E EL  +V NI + +S+  L+ +   EFP
Sbjct: 61  VEKEGVVVLPSRLFSDLVRKLPD-----VLIELELQNDVINIHYNESDLSLRGYDPEEFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +F L  S+ K ++++T FA + EE R    G    I +  L+L  +ATD H
Sbjct: 116 LLPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTH 173

Query: 180 RLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA  +AE+    QI K   II P K +GEI R+L  +D ++ +  ++++I     ++ +
Sbjct: 174 RLAYRIAEISNPEQI-KFQGII-PAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHL 231

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKL 295
             RLI+G+FPNY+ VIP S   ++ ++    + +V+R S+++        +KLS+ +++L
Sbjct: 232 LSRLIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERL 291

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     ++GK  E M V      + I FN K+LL+++  I S     +E+VF L  S S
Sbjct: 292 SID-QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYS 345

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              IR  D           N  Y+ +P+R
Sbjct: 346 PGIIRPVDDP---------NYLYLALPVR 365


>gi|322433662|ref|YP_004215874.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9]
 gi|321161389|gb|ADW67094.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9]
          Length = 397

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 119/392 (30%), Positives = 207/392 (52%), Gaps = 22/392 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGA 56
           ++ITV R+++L  L  A  ++ERK TIP+  + L +A++    G L I A+  +  +  +
Sbjct: 21  LEITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASNEGETGRLTITATDLDQSLRTS 80

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             A V   G+ T+ A  LYD +R L +G       +N     V I  G SN  +     +
Sbjct: 81  CAAKVKKAGACTIPARKLYDYIRLLPEGEISIKLMDNHW---VQIRAGRSNTKMVGMARA 137

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP   E     ++ L+ + LK +V +T FA++ EE RY LNG    +  E + +  VAT
Sbjct: 138 NFPQVAEFPASGAYTLSVASLKTMVSKTIFAISNEESRYTLNGALLVLKAESMAM--VAT 195

Query: 177 DGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIE 233
           DGHRLA  E   + +  I+     ++PRKA+ E+  +L+S D+ +++ +  +S +   + 
Sbjct: 196 DGHRLAHVEKLGETLEGISGEKKTLIPRKALSELSSLLNSTDAETMQFADDDSTLFFKMG 255

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              ++ R + G+FPNY+ V+P  N+K + V   +L  A+ RV+  +  R  A+K+ L  +
Sbjct: 256 GRVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMSAIQRVAQFADERSGAIKIRLEQN 315

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L ++  + D G++ +++   YN  P+ + FN +YL++ +  I +      EV      +
Sbjct: 316 ELRLSSSSTDSGESEDTIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKDA 371

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S+  +R +D     N+D K    Y+LMPMRI
Sbjct: 372 QSAGQMRPED----GNEDVKYR--YILMPMRI 397


>gi|11320919|gb|AAG33955.1|AF197895_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  157 bits (398), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 98/368 (26%), Positives = 200/368 (54%), Gaps = 21/368 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYD 76
            R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S + + G+ T+S   L D
Sbjct: 18  SRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLSTEHISGTATISGRKLLD 77

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I R   + + I     N    +++I  G+S + L + P   FP   +  ++  F + S +
Sbjct: 78  ICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFPVHHDFHHISEFFIPSDI 134

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK ++E+  F+M  +++  YLNGI   + + D  L AVATDG+RL +++  +   I    
Sbjct: 135 LKKMIEKIQFSMGKQDVPIYLNGIL--LEKTDRSLYAVATDGYRLGISKFFLKENIIPF- 191

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + +LI+G++P+Y++V+  +
Sbjct: 192 SIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTTQLIEGQYPDYKSVLLEN 251

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            +  + +N   L+Q++ R +I+S  +   V++ + + +  +  DN +   A +  N+ Y 
Sbjct: 252 KNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLSDNQEEEIAEDRFNINYT 311

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I  N  Y++EI+++I+S     + +   L+++N+S+ I           +N  + 
Sbjct: 312 GNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQIEA---------ENDASI 357

Query: 377 FYVLMPMR 384
            YV+M ++
Sbjct: 358 LYVVMLLK 365


>gi|326563091|gb|EGE13364.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 12P80B1]
 gi|326571724|gb|EGE21737.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC8]
 gi|326574362|gb|EGE24305.1| DNA polymerase III, beta subunit [Moraxella catarrhalis CO72]
          Length = 385

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 197/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R+ +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRNLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +  ++      E  T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  +   C + V N ++G+A E + V Y+   +++ FN  YL  +++      
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V++ EV   L+  +S   I     D            YV+MPMR
Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384


>gi|325288203|ref|YP_004264384.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963604|gb|ADY54383.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 365

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/345 (30%), Positives = 181/345 (52%), Gaps = 12/345 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V ++D+L  +    R +  KNT+P+   + L+A +  L  +A+  E+ I  +  A 
Sbjct: 1   MKIKVTKTDLLTGVNTVQRAVSAKNTLPILQGIKLRAENNTLCFEATDLELGIRSSFDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + + L  +IVRKL D + +     + +    NI++  S+F +  +   EFP 
Sbjct: 61  IIEEGTIVLPSRLFSEIVRKLPD-SDVVLESTDHI---TNINYSGSSFTINGYDPEEFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +       +L + + KN++ +T FA A EE R    G+  H+ E++L L  V TD HR
Sbjct: 117 IGDVPVEDEIKLPADLFKNMIRQTVFACAAEETRPVFTGLLLHLEEDNLAL--VGTDTHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA     I     K   I VP K++ EI R+L   D  + +  S+SR+  N  S+ +  R
Sbjct: 175 LAYRTAKIPGNKQKFKGI-VPAKSMQEIYRLLQD-DHDLTIYCSKSRVFFNFGSIQLQAR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSDKLCM 297
           LIDG+FPNY+ VIP   + +L +N  N    V+R S++S    ++  +V++++ +  L +
Sbjct: 233 LIDGQFPNYKQVIPQKCNTKLLINTKNFTDMVERASLLSKDNLIKTGSVRINVENSVLKI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
                + GK  E M +  +   + I FN KY+L+++  I S+ ++
Sbjct: 293 N-QFSEAGKINEEMKINQDGEDVSISFNSKYVLDLLKIIDSENIL 336


>gi|332879970|ref|ZP_08447654.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681966|gb|EGJ54879.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 373

 Score =  157 bits (397), Expect = 2e-36,   Method: Compositional matrix adjust.
 Identities = 105/344 (30%), Positives = 171/344 (49%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 1   MKFIVSSSYLLKKLQVFGGVINSSNTMPILDNFLFELSPNSLTISASDLETTVRGTLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI +SA LL DI++   +       KEN +   + IS    N+ L     +EFP 
Sbjct: 61  SDSVGSIAISAKLLTDILKTFSEQPLTFLVKENNI---IEISSTTGNYTLAYLDGAEFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L   VL   +++T FA+  +++R  ++G+ F  NE+ L    V TD H+
Sbjct: 118 PVALPEANKVTLLGDVLATAIQKTIFAVGNDDLRPTMSGVLFQFNEQGLTF--VGTDAHK 175

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   E  DI A  A     I+P+K +  +  IL+  ++ V V  +ES    + + +    
Sbjct: 176 LVKYERADIKATEAT--DFIMPKKPLNILKGILAGSETQVTVEYNESNAEFSFDDMEFIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY  VIP  N  +L +N +    +V+R+S+ S+     V+L ++   L ++ 
Sbjct: 234 RLIDGKYPNYDAVIPKENPNKLTLNRSQFYNSVNRLSLFSNKTTHQVRLKVAGSSLIISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   K  E +   Y    M+I FN K+L E+I+N+ SDE++
Sbjct: 294 EDVDYSNKGEERLTCNYQGDDMEIGFNSKFLKEMINNLDSDEIL 337


>gi|330861745|emb|CBX71919.1| DNA polymerase III subunit beta [Yersinia enterocolitica W22703]
          Length = 253

 Score =  157 bits (396), Expect = 4e-36,   Method: Compositional matrix adjust.
 Identities = 86/255 (33%), Positives = 143/255 (56%), Gaps = 7/255 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIP 254
           +L+DG FP+Y+ V+P
Sbjct: 235 KLVDGRFPDYRRVLP 249


>gi|258513368|ref|YP_003189590.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777073|gb|ACV60967.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM
           771]
          Length = 367

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 200/385 (51%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    + ++L  +    + +  K+ +P+   +L +A D  L ++A+  E+ I   +P  
Sbjct: 1   MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLPVK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + +  + DI+R+L D   +  F+ N+    + I + +S   +  F   EFP 
Sbjct: 61  VIETGEIVLPSKYIIDIIRRLPD--TVIEFESNDYLNSITIKYKNSQANIHGFAADEFPM 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                  ++F +++S+ K ++ +T FA  T+E R    GI F I E++ K+  VATD HR
Sbjct: 119 LPPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+    +     ++P IIVP K + E+L+IL S++D  +K++++E++I   +  +++  
Sbjct: 177 LAMITEHLPLIKQELPGIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI G++PNY +VIP     ++++  ++  Q+V+R S++SS   Q +++   +    +  
Sbjct: 237 RLIKGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIVIS 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G   E + V++    + I FN KYL++ +  + S     +E+   L    +   +
Sbjct: 297 SNNEAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDS-----EEIYLELSGPINPCLL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           R +D+          N   +L+P+R
Sbjct: 352 RTEDR----------NYLSILLPVR 366


>gi|81251065|gb|ABB69870.1| DNA polymerase III beta chain [Nitrosospira sp. PJA1]
          Length = 369

 Score =  156 bits (394), Expect = 5e-36,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 203/387 (52%), Gaps = 25/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A   EI+IT        
Sbjct: 4   IEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIAPDLEIQITTYTTDGGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   S+TV+A  L DI+R L +  Q++    +N L  +     G S F LQ+ P  +FP
Sbjct: 64  ADEEYSVTVAAKKLQDILRALPEKVQVTLETSDNRLQAKA----GKSRFNLQTLPAEDFP 119

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E  E   + ++    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDG
Sbjct: 120 KFPESNEPQGTVKIQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ + 
Sbjct: 178 HRLAFALIMLETPLEKK-EVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLV 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L + 
Sbjct: 237 SKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIV 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +N +  +  E + + YN   +DI FN  YLL++++N  S     + V      +NSS  
Sbjct: 297 CNNSEQEETQEELELQYNGEGLDIGFNITYLLDVLNNAES-----ETVTCAFGDANSSAL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     DS           YV+MPMRI
Sbjct: 352 ITIPGNDSFK---------YVVMPMRI 369


>gi|326562315|gb|EGE12641.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 103P14B1]
 gi|326575519|gb|EGE25444.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 101P30B1]
          Length = 385

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +  +       E  T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPE--ETVVIDAPEDTTRCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  +   C + V N ++G+A E + V Y+   +++ FN  YL  +++      
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V++ EV   L+  +S   I     D            YV+MPMR
Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384


>gi|13398088|gb|AAK21713.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 103/369 (27%), Positives = 196/369 (53%), Gaps = 14/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  
Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++L +
Sbjct: 235 TAQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQLKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDS 366
            I  +   S
Sbjct: 350 QIEAEHDAS 358


>gi|326571821|gb|EGE21827.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC7]
          Length = 385

 Score =  155 bits (393), Expect = 7e-36,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   G  T+ A + + + + L +  ++      E  T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGGTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      + + +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSAIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNGITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  +   C + V N ++G+A E + V Y+   +++ FN  YL  +++      
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V++ EV   L+  +S   I     D            YV+MPMR
Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384


>gi|326560702|gb|EGE11070.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 46P47B1]
 gi|326561744|gb|EGE12079.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 7169]
 gi|326569035|gb|EGE19104.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC1]
          Length = 385

 Score =  155 bits (393), Expect = 8e-36,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +  ++      E  T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  +   C + V N ++G+A E + V Y+   +++ FN  YL  +++      
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V++ EV   L+  +S   I     D            YV+MPMR
Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384


>gi|326578062|gb|EGE27922.1| DNA polymerase III, beta subunit [Moraxella catarrhalis O35E]
          Length = 385

 Score =  155 bits (392), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 112/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPEETVVIDAPEDT--TRCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTAVPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  +   C + V N ++G+A E + V Y+   +++ FN  YL  +++      
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V++ EV   L+  +S   I     D            YV+MPMR
Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384


>gi|13398084|gb|AAK21711.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  155 bits (391), Expect = 1e-35,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIDSNILKKMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  
Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++  +
Sbjct: 235 TAQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDS 366
            I  +   S
Sbjct: 350 QIEAEHDAS 358


>gi|13398101|gb|AAK21719.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 103/370 (27%), Positives = 197/370 (53%), Gaps = 16/370 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +RL +    I+ +  K+ S  II+ RK + E+ ++L+     +K+ + ++ I + IE L 
Sbjct: 175 YRLGMTHT-ILTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLV 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++  
Sbjct: 234 FTAQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFK 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S
Sbjct: 294 VLSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNS 348

Query: 357 VFIRGKDKDS 366
           + I  +   S
Sbjct: 349 IQIEAEHDAS 358


>gi|71062229|gb|AAZ21232.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
          Length = 296

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 99/313 (31%), Positives = 174/313 (55%), Gaps = 20/313 (6%)

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           +YDI+RK   G +I+    +   +++ +    S F L     SEFP T E      F + 
Sbjct: 1   MYDIIRKFSSGKKINLSLTDV--SKLQVESEKSVFNLNCISASEFPLTDENFNQNEFSIK 58

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDGHRLAVAEVDIVAQ 191
           S  L  L+ +  F+++ +E R+YL+GIFFH  + + K  L A ATD HR++++++ +  Q
Sbjct: 59  SKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSHRMSISKIRLDQQ 118

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
           +   P II+P+K + ++  +L S D  VK+S  +S+I   + +  +  +LIDG+FPNY  
Sbjct: 119 VDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISKLIDGKFPNYIQ 177

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311
           VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L ++V+N + G   ES+
Sbjct: 178 VIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVNNTNSGDGKESL 237

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
            V ++   ++I FN +YL+++   +  D++   E+ F  D+ + ++     D DS     
Sbjct: 238 TVKFDH-DLEISFNSRYLIDVASQLDGDKI---EIFFN-DTGSPALIKDPGDFDS----- 287

Query: 372 NKVNAFYVLMPMR 384
                 +V+MPM+
Sbjct: 288 -----IFVVMPMK 295


>gi|11320897|gb|AAG33944.1|AF197884_1 DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|13398063|gb|AAK21701.1| DnaN [Buchnera aphidicola]
 gi|13398065|gb|AAK21702.1| DnaN [Buchnera aphidicola]
 gi|13398067|gb|AAK21703.1| DnaN [Buchnera aphidicola]
 gi|13398069|gb|AAK21704.1| DnaN [Buchnera aphidicola]
 gi|13398072|gb|AAK21705.1| DnaN [Buchnera aphidicola]
 gi|13398074|gb|AAK21706.1| DnaN [Buchnera aphidicola]
 gi|13398076|gb|AAK21707.1| DnaN [Buchnera aphidicola]
 gi|13398080|gb|AAK21709.1| DnaN [Buchnera aphidicola]
 gi|13398082|gb|AAK21710.1| DnaN [Buchnera aphidicola]
 gi|13398086|gb|AAK21712.1| DnaN [Buchnera aphidicola]
 gi|13398090|gb|AAK21714.1| DnaN [Buchnera aphidicola]
 gi|13398093|gb|AAK21715.1| DnaN [Buchnera aphidicola]
 gi|13398097|gb|AAK21717.1| DnaN [Buchnera aphidicola]
 gi|13398099|gb|AAK21718.1| DnaN [Buchnera aphidicola]
 gi|13398103|gb|AAK21720.1| DnaN [Buchnera aphidicola]
 gi|13398105|gb|AAK21721.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 102/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  
Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++  +
Sbjct: 235 TAQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDS 366
            I  +   S
Sbjct: 350 QIEAEHDAS 358


>gi|296112232|ref|YP_003626170.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4]
 gi|295919926|gb|ADG60277.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4]
          Length = 385

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   G  T+ A + + + + L +  ++      E  T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGGTTLPAEMFFSVCKSLPE--EVVVIDAPEDTTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAH-RLLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  +   C + V N ++G+A E + V Y+   +++ FN  YL  +++      
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLN------ 349

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V++ EV   L+  +S   I     D            YV+MPMR
Sbjct: 350 VLEGEVCLELNQPSSPALIYQVGDDLHR---------YVIMPMR 384


>gi|81251054|gb|ABB69862.1| DNA polymerase III beta chain [Nitrosospira sp. KAN8]
          Length = 369

 Score =  154 bits (390), Expect = 2e-35,   Method: Compositional matrix adjust.
 Identities = 121/387 (31%), Positives = 205/387 (52%), Gaps = 25/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT        
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTYTTDDGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   S+TV+A  L DI+R L +  Q++    +N L  +     G S F LQ+ P  +FP
Sbjct: 64  ADEEYSVTVAAKKLQDILRALPEKMQVTLETSDNRLQAKA----GKSRFNLQTLPAEDFP 119

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E  E   + ++    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDG
Sbjct: 120 KFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ + 
Sbjct: 178 HRLAFALMMLETPLEK-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLV 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L + 
Sbjct: 237 SKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIV 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +N +  +A E + + Y+   +DI FN  YLL++++N  S     + V      +NSS  
Sbjct: 297 CNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDS-----ETVTCAFGDANSSAL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     DS           YV+MPMRI
Sbjct: 352 ITIPGNDSFK---------YVVMPMRI 369


>gi|320535592|ref|ZP_08035689.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421]
 gi|320147555|gb|EFW39074.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421]
          Length = 367

 Score =  154 bits (388), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 107/385 (27%), Positives = 196/385 (50%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T ++   L+ L  A  II  K  I +  +VLL A +G L +KA+  ++     IP  
Sbjct: 1   MKFTFDKDVFLKELAIAQEIISNKTAISILSNVLLTAKEGSLILKATDIKVNFETKIPVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       ++  L  G +I   ++++     +++   + F L++  +++FP 
Sbjct: 61  IQEEGSTTVFCDKFVSVISSLPQG-EIEITEKDQKLIITSVAK-KAKFQLRTISDNDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E + +  FE+ +   K ++E+T F+++ +E RY++NG++     E+L    VATDG R
Sbjct: 119 FSEPDNIQFFEINTKDFKEMIEQTVFSVSDDETRYFMNGVYMEKKNENL--IFVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E +    I     II+P K +  I R  +  + S+ + + E  I  N  S   S  
Sbjct: 177 LAYIEKNFGITIPDFKGIIIPPKILSIINR-RTQNEGSIAIGVGEKNIFFNFGSYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY  VIP + DK   +  + L  A+ RV+++   + + +  +L+S  L ++ +
Sbjct: 236 LIDGQFPNYDKVIPENQDKSFEIEKSELTDALKRVALLVEQKTRRIFFNLNSGSLIISSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G+A E +   Y    + +  NY Y+ E +  I+SD +       +++ ++    +R
Sbjct: 296 ENELGQAKEEIPCQYEGDEIVMALNYLYVEEPLKVINSDRI-------KIEFTDP---MR 345

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ NKD     F+++MPM+I
Sbjct: 346 AITLRAEPNKD----FFHIIMPMQI 366


>gi|81251050|gb|ABB69859.1| DNA polymerase III beta chain [Nitrosospira sp. HBN8222A]
          Length = 369

 Score =  153 bits (387), Expect = 3e-35,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +      
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   S+TV+A  L DI+R L +  Q++    +   + +    G S F LQ+ P  +FP 
Sbjct: 64  ADEEYSVTVAAKKLQDILRALPEKVQVTLETSD---SRLQAKAGKSRFNLQTLPAEDFPK 120

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E  E   + ++    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDGH
Sbjct: 121 FPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ +  
Sbjct: 179 RLAFALMMLETPLEKK-EVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L +  
Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLRIVC 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A E + + Y+   +DI FN  YLL++++N        + V      +NSS  I
Sbjct: 298 NNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSSALI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS           YV+MPMRI
Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369


>gi|153830817|ref|ZP_01983484.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39]
 gi|148873701|gb|EDL71836.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39]
          Length = 250

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 85/258 (32%), Positives = 144/258 (55%), Gaps = 9/258 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGCITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIDGTTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSN 257
           +L+DG FP+Y+ V  C N
Sbjct: 235 KLVDGRFPDYRRV--CRN 250


>gi|13398078|gb|AAK21708.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIHSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  
Sbjct: 175 YRLGMTHALLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY  +     +  + +NC  L+Q++ R +I++  +   V++ + +++  +
Sbjct: 235 TAQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDS 366
            I  +   S
Sbjct: 350 QIEAEHDAS 358


>gi|82701137|ref|YP_410703.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC
           25196]
 gi|81251042|gb|ABB69853.1| DNA polymerase III beta chain [Nitrosospira multiformis]
 gi|82409202|gb|ABB73311.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 369

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 118/386 (30%), Positives = 205/386 (53%), Gaps = 23/386 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +      
Sbjct: 4   IEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTDGGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    S+TV+A  L DI+R L +  +++    +   + +    G S F LQ+ P  +FP 
Sbjct: 64  VREEYSVTVAAKKLQDILRALPEKMRVTLETND---SRLQAKAGKSRFNLQTLPAEDFPK 120

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E  E   + ++    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDGH
Sbjct: 121 FPESNETQGTVKVQQKELKHLLAMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A + +   + +   +I+PRK V E+ R+L+  +  V + + ++++     ++ +  
Sbjct: 179 RLAFALMMLETSLER-KEVILPRKVVLELSRLLNETEDPVTIEVLQNQVRFTFSNVVLVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L +  
Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTADNLRIVC 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A E + + YN   +DI FN  YLL++++N  S     + V      +NSS  I
Sbjct: 298 NNSEQEEAQEELELQYNGDGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSSALI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS           YV+MPMRI
Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369


>gi|81251077|gb|ABB69879.1| DNA polymerase III beta chain [Nitrosospira sp. TYM9]
          Length = 369

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 125/389 (32%), Positives = 208/389 (53%), Gaps = 29/389 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI----P 58
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT ++    P
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKREKISFIATDLEIQITTSVEDANP 63

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESE 117
           A  +   S+TV A  L DI+R L D  Q++    EN L  +     G S F LQ+ P  +
Sbjct: 64  AGEE--RSVTVPAKKLQDILRALPDKVQVTLETGENRLHAKA----GKSRFNLQTLPVED 117

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E      +    LK+++    +AMA ++IR YLNG+   +  ED  L  VAT
Sbjct: 118 FPKFPESTEPQAKITVQQKELKHILSMVQYAMAQQDIRCYLNGLLLLM--EDSYLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + + A   K   +I+PRK V E+ R+L+  D  V +   ++++     ++ 
Sbjct: 176 DGHRLAFALMLLAAPQEKK-EVILPRKVVLELSRLLNDVDEPVTMEFLQNQVRFTFSNVI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP   +K+  +N   L Q + R SI+S+ + + V+L L+S  L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + Y    +DI FN  YLL+++++++ + V      F   +S++ 
Sbjct: 295 IVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNCETV---RCAFGDANSSAL 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I G       N D K    YV+MPMRI
Sbjct: 352 ISIPG-------NNDFK----YVVMPMRI 369


>gi|13398095|gb|AAK21716.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  153 bits (387), Expect = 4e-35,   Method: Compositional matrix adjust.
 Identities = 101/369 (27%), Positives = 195/369 (52%), Gaps = 14/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + I+     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINI----ELHANKMHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I    L +  VATDG
Sbjct: 117 PNHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNSLYM--VATDG 174

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  
Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY  +     +  + +NC  L+Q++ R +I++  +   V++ + +++  +
Sbjct: 235 TAQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDS 366
            I  +   S
Sbjct: 350 QIEAEHDAS 358


>gi|147676337|ref|YP_001210552.1| DNA polymerase sliding clamp subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146272434|dbj|BAF58183.1| DNA polymerase sliding clamp subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 369

 Score =  152 bits (385), Expect = 7e-35,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 175/342 (51%), Gaps = 6/342 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +R ++   L    R +  KN +P+   +  +A D  L + A+  E+ I  +I A 
Sbjct: 1   MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSITAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+  + A  + +++RKL D  Q    + ++    V I +  S   +  F   E+P 
Sbjct: 61  VLQPGAAVLPARYITELIRKLPD--QPFLIESDQDTGHVTIRYASSEASMNCFQADEYPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    F + +  ++ ++ +  FA+ ++E R    G+ F + E  +++  VATD HR
Sbjct: 119 FPVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREGQVQV--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA  + D+  +I+    ++I+P +++ E+ RI   +D  VKV+ +ES++   +   S+  
Sbjct: 177 LAWRKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLIT 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI G FPNY+ VIP      +R    +L +A +R S++S     AV+L    + + +T 
Sbjct: 237 RLIGGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTA 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            N ++G+  E + V     P+ I FN +YL +++  + S+E+
Sbjct: 297 -NSEVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGSEEI 337


>gi|81251046|gb|ABB69856.1| DNA polymerase III beta chain [Nitrosospira sp. 9SS1]
          Length = 369

 Score =  152 bits (384), Expect = 8e-35,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +      
Sbjct: 4   IEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTDGGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   S+TV+A  L DI+R L +  +++    +   + +    G S F LQ+ P  +FP 
Sbjct: 64  ADEEYSVTVAAKKLQDILRALPEKMRVTLETSD---SRLQAKAGKSRFNLQTLPAEDFPK 120

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E  E   +  +    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDGH
Sbjct: 121 FPESNEKQGTVTVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A + +   + +   +I+PRK V E+ R+L+  +  V + + ++++     ++ +  
Sbjct: 179 RLAFALMMLETSLER-KEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVVLVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L+++ L +  
Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTANNLRIVC 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A E + + YN   +DI FN  YLL++++N  S     + V      +NSS  I
Sbjct: 298 NNSEQEEAQEELELQYNGEGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSSALI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS           YV+MPMRI
Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369


>gi|81251062|gb|ABB69868.1| DNA polymerase III beta chain [Nitrosospira sp. TCH716]
          Length = 369

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +      
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   S+TV+A  L DI+R L +  Q++    +   + + +  G S F LQ+ P  +FP 
Sbjct: 64  ADEEYSVTVAAKKLQDILRALPERVQVTLETSD---SRLQVKAGKSRFNLQTLPAEDFPK 120

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E  E   + ++    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDGH
Sbjct: 121 FPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ +  
Sbjct: 179 RLAFALMMLETPLEKK-EVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++  L +  
Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLRIVC 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A E + + Y+   +DI FN  YLL++++N        + V      +NSS  I
Sbjct: 298 NNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSSALI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS           YV+MPMRI
Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369


>gi|11320893|gb|AAG33942.1|AF197882_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/369 (26%), Positives = 197/369 (53%), Gaps = 14/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   + +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ITVS+  L DI R   + + ++     EL   +++I    S + L++ P   F
Sbjct: 61  KHYVSGNITVSSRKLLDICRHSLNSSNMNI----ELHANKIHIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     ++  F + S++LK ++E+THF+M  +++RYYLNG+   +    L +  VATDG
Sbjct: 117 PNHNNFHHIAEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEMIHNSLYM--VATDG 174

Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ +  + I + IE L  
Sbjct: 175 YRLGMTHTRLTKTQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGTNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY ++     +  + +NC  L+Q++ R +I++  +   V++ + +++  +
Sbjct: 235 TAQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQCKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDS 366
            I  +   S
Sbjct: 350 QIEAEHDAS 358


>gi|116750114|ref|YP_846801.1| DNA polymerase III subunit beta [Syntrophobacter fumaroxidans MPOB]
 gi|116699178|gb|ABK18366.1| DNA polymerase III, beta subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 369

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 108/370 (29%), Positives = 193/370 (52%), Gaps = 20/370 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           MK+ +E+ +++++L     I ++K+++PV  +VL+ +++   +E  A+  E+ +      
Sbjct: 1   MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQTGG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  GS TVSA  L++IVR+L    Q     E     ++ I  G + F L + P  +FP
Sbjct: 61  QVETPGSSTVSARKLFEIVREL---PQPEVLLEGLPNNKMQILSGRARFELSTIPGEDFP 117

Query: 120 ST---KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVA 175
                +E E V   ++ ++ LK  + +T  ++  +E  + + G F H +NE+  +   V+
Sbjct: 118 QLNFYRETELV---KVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNEDSYRF--VS 172

Query: 176 TDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           +DGHRL+  EV  +    +     +I+PRK V EILR+L  K+  V + + E  + L   
Sbjct: 173 SDGHRLSYCEVPKEAFGTLDIREGLIIPRKGVQEILRMLE-KEEEVVLGVHEKYVVLRTP 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S  +SV+L+D EFP Y+ +IP      + ++      A+ R SI+S+   + V+  L+  
Sbjct: 232 STFLSVQLLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NP++G A E+++V Y      + FN +YLLE I  + S  V  + V    D  
Sbjct: 292 VLELEAGNPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWV----DQF 347

Query: 354 NSSVFIRGKD 363
           +  VF+  +D
Sbjct: 348 HGGVFVGSED 357


>gi|81251058|gb|ABB69865.1| DNA polymerase III beta chain [Nitrosospira sp. TCH711]
          Length = 369

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 117/386 (30%), Positives = 204/386 (52%), Gaps = 23/386 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I  +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +      
Sbjct: 4   IETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATDGGK 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   S+TV+A  L DI+R L +  Q++    +   + + +  G S F LQ+ P  +FP 
Sbjct: 64  ADEEYSVTVAAKKLQDILRALPERMQVTLETSD---SRLQVKAGKSRFNLQTLPAEDFPK 120

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E  E   + ++    LK+L+    +AMA ++IRYYLNG+   +    LK+  VATDGH
Sbjct: 121 FPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLNGLLLLLENNQLKV--VATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ +  
Sbjct: 179 RLAFALMMLETPLEK-KEVILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVILVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++  L +  
Sbjct: 238 KVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLRIVC 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A E + + Y+   +DI FN  YLL++++N        + V      +NSS  I
Sbjct: 298 NNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSSALI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS           YV+MPMRI
Sbjct: 353 TIPGNDSFK---------YVVMPMRI 369


>gi|11320909|gb|AAG33950.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 206/387 (53%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ +  ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFNIKNNIFVQHLQKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEF 118
              + GSITVS+  L  I R   + + I      EL   ++++    S++ L + P   F
Sbjct: 61  QHYISGSITVSSRKLLQICRNSSNLSNIQI----ELHDNKIHVISDKSHYTLNTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +   Y+    + S +L+ ++E+ +F+M  +++RYYLNG+   I +  L +  VATDG
Sbjct: 117 PNHQNFCYISEITIQSRILREIIEKIYFSMGKQDVRYYLNGMLCKIIDNSLHM--VATDG 174

Query: 179 HRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +++  ++ + I K  SII+ RK + E+  +L+     VKV +  S I + I  L  
Sbjct: 175 YRLGISKTLLLKEEIIKNFSIIIARKGITELYXLLNFSXQLVKVFIGRSNIRIYIXXLIF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FP+Y+++     +  + ++C  L+Q++ R +I++  +   +++ ++ ++  +
Sbjct: 235 TAQLIEGKFPDYESIFLKKKNNGILIDCQLLKQSLSRAAILAHEKFCGIEIHINKNQFKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A +  ++ Y    ++I  N  Y+L+I++ I+S       ++  L+ SN+S+
Sbjct: 295 LSDNQEEETAEDIFDINYIGPSIEISINVYYILDILNVINS-----QNILLFLNHSNNSI 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I           +N  +  Y++M ++
Sbjct: 350 QIEA---------ENDASTIYIVMLLK 367


>gi|149919820|ref|ZP_01908297.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1]
 gi|149819427|gb|EDM78858.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1]
          Length = 372

 Score =  152 bits (383), Expect = 1e-34,   Method: Compositional matrix adjust.
 Identities = 110/386 (28%), Positives = 190/386 (49%), Gaps = 15/386 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M+  ++++  L  L  A  + +R++T+PV  +VLL+A  D  L   A+   I +T  +P 
Sbjct: 1   MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVPC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   GS+T+    L  +VR L  GA      +N   +   I    S F L   PE +FP
Sbjct: 61  KVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDN---SWAQILAKRSEFKLMGMPEGDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +        + +  L NL+E+T F+++T+E R  LNG     + +   +  V+TDGH
Sbjct: 118 ELPDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLESDGQTATM--VSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL    +++   +A    IIVPRK + EI ++L+  +  V +++S+  + +  E L++SV
Sbjct: 176 RLTKFSLELEG-LALPREIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L +  FP ++ V+P    +   V  T L  A+ + ++++  +   VK+ L    L +  
Sbjct: 235 KLNNVTFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DNP++G     + V Y+  P+   FN  YL+E +  +S+D +  D              +
Sbjct: 295 DNPELGAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLD-----FQGELDPCVL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R    D  N   + V+   V+MPMRI
Sbjct: 350 RPAPDDEGN---DPVDFLAVVMPMRI 372


>gi|198282150|ref|YP_002218471.1| DNA polymerase III subunit beta [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667577|ref|YP_002424516.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198246671|gb|ACH82264.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519790|gb|ACK80376.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 365

 Score =  151 bits (382), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 106/388 (27%), Positives = 185/388 (47%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT++R D+L +L +   I +R+   P+  HVL++A        A+  E++++  +   
Sbjct: 1   MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSADLDHP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+  V A  LYDI R L +   I F K+   G ++ +    S F L   P  +FP 
Sbjct: 61  VDAPGTCAVPARKLYDICRALPEHTPIEFHKD---GEKLLLKAAKSRFTLHILPADQFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +      +   +  +      MA  + R +LNG+   +  ++L+L  VATDGHR
Sbjct: 118 LSTHSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRL--VATDGHR 175

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+  +   + + +     I+PRKAV E+LRIL   D  + + +S++   LN  +   + 
Sbjct: 176 LAMMTLPFASSLESGSYQAILPRKAVLELLRILD--DGDIVLEMSDASFLLNDGTQQFAC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LID ++P+Y+ VIP  + +   ++    + A+ +  ++ S R     L L +D++ +  
Sbjct: 234 KLIDAKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +    + V Y    +DI FN +YL             D   +F       S+ +
Sbjct: 294 RNEEQEEGEIQIPVEYQGDTLDIAFNSRYL------------TDTTQIF----PQESLRM 337

Query: 360 RGKDKDSKN--NKDNKVNAFYVLMPMRI 385
           R KD DS       +  N  Y++MP+R+
Sbjct: 338 RVKDSDSSAVFTPVDSNNPLYIIMPVRL 365


>gi|255659820|ref|ZP_05405229.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544]
 gi|260847895|gb|EEX67902.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544]
          Length = 370

 Score =  151 bits (381), Expect = 2e-34,   Method: Compositional matrix adjust.
 Identities = 96/341 (28%), Positives = 183/341 (53%), Gaps = 9/341 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  ++++   L    R +  K   P+   + L+A    LE++A+  EI +   I A 
Sbjct: 1   MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  G +TV      ++VRKL  +  +++   + ++   V+I    + F L S   +EFP
Sbjct: 61  IEEPGELTVGGRYFQEVVRKLPGENVKLACTADEKI---VHIESAMAKFTLLSMNAAEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E    F +  ++L++L+++T FA +T+E R    G    + E   K+   AT+ H
Sbjct: 118 TIQPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTEN--KVTMAATNTH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RL+V        I  +  +I+P + + E+L  +SS   + VK+S S ++I  + ++L M+
Sbjct: 176 RLSVKSETFDQSIGNI-KVIIPSRILQELLHNMSSDIPTDVKISCSYNQISFSFDNLYMT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCM 297
            RLI+G+FPNY+ VIP      ++ +      AVDR+S+++   +   +KL  + +++ +
Sbjct: 235 SRLIEGQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           T +NP++G A E +    +   + I FN +Y+++++ NI S
Sbjct: 295 TSNNPEIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDS 335


>gi|254445280|ref|ZP_05058756.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium
           DG1235]
 gi|198259588|gb|EDY83896.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium
           DG1235]
          Length = 380

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 92/363 (25%), Positives = 188/363 (51%), Gaps = 21/363 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R      L     ++  K T+P+  +VL++A    + +  +  ++ I   I A+
Sbjct: 1   MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIKAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++T+    L  IV++L +        E     +V I+ G SNF +      EFP+
Sbjct: 61  IEEEGAVTLPVKRLATIVKELPNS---DVKVEASPSNQVKIASGGSNFKIMGISREEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED----LKLCAVAT 176
             E     SF +    L  +++   +A +++E RY LNG+FF+  E +     +L  VAT
Sbjct: 118 LPEFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DG RLA  + ++        S+I+P K V E++R+L  K  ++K++ ++ R+   I +  
Sbjct: 178 DGRRLAKTDHEMEVGEGMSGSLILPAKTVSELVRLLD-KGENLKIAFNDRRVAFQIHTKD 236

Query: 235 --------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
                   + +  ++++G +PNYQ VIP    + ++V      Q++ R +++++ +   V
Sbjct: 237 DSDGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSNQV 296

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV---VD 343
           K+ +S++ + ++  +PD G++ ES+ + Y+   + + FN ++L++ +  ++ DE+   + 
Sbjct: 297 KIQISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKALTKDELFFELK 356

Query: 344 DEV 346
           DEV
Sbjct: 357 DEV 359


>gi|51891140|ref|YP_073831.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51854829|dbj|BAD38987.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 368

 Score =  150 bits (380), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 194/386 (50%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + +  +   L    R +  KNTIPV   V L A  G L I+A+  E+ I    P  
Sbjct: 1   MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEAVTPCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G   + A    D++R++  G  ++S    N + T   +  G S + +  F   +FP
Sbjct: 61  VISEGETVLPARYFADLIRRIPYGNIELSVDYHNHVAT---LRWGRSQYVIHGFAADQFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +   +F +  S+L++L+ +T FA   +E + +L G+ F +  +DL L   ATDG 
Sbjct: 118 TLPDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKL-RDDL-LTGTATDGI 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           R+A AE           S+I+P +++ E+ R+L+  +DS V V+++ +++  ++ +  + 
Sbjct: 176 RIAYAEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL++G++P+   ++P     E  +      +A++R ++++  +  AVK+S  +DK+ +T
Sbjct: 236 SRLLEGQYPDVMRLVPQHYPTEAVLPGAEFMEALERATLIT--KDGAVKISFQTDKVTIT 293

Query: 299 VDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            + P++G+  E + V      P+DI FN +YLL+ +        V +E  FR   S S  
Sbjct: 294 SNTPEVGQVYEELAVTSMAGDPLDIGFNARYLLDFLK-------VLEEKQFRFQCSGSRN 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
             R    DS           YV++P+
Sbjct: 347 PARLMPADSS-------QFLYVVLPL 365


>gi|9966390|gb|AAG10236.1|AF201699_1 DNA polymerase III beta subunit [Sinorhizobium meliloti]
          Length = 164

 Score =  150 bits (379), Expect = 3e-34,   Method: Compositional matrix adjust.
 Identities = 79/176 (44%), Positives = 109/176 (61%), Gaps = 14/176 (7%)

Query: 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           ++L S D  V V +S+++I L I S+ M+ +LIDG FP+YQ VIP SNDKELRV+C +  
Sbjct: 3   KLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLIDGTFPDYQRVIPASNDKELRVDCQSFS 62

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
           QAVDRVS +SS R +AVKL+L+  ++ +TV+NPD G A E + V Y   P++I FN KYL
Sbjct: 63  QAVDRVSTISSERGRAVKLALADGQMTLTVNNPDSGSATEELPVGYESDPLEIGFNAKYL 122

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L+I   ++       E VF L    S   +R    +         +A YVLMPMR+
Sbjct: 123 LDITGQLTG-----GEAVFLLADPGSPTLVRDLAAE---------DALYVLMPMRV 164


>gi|118602062|ref|YP_903277.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567001|gb|ABL01806.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 367

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 114/394 (28%), Positives = 200/394 (50%), Gaps = 36/394 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +   ++L  L     ++E+K  +P+  HVL+Q  D LL +  +  EIEI  +    
Sbjct: 1   MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRASQIIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQIS--------FFKENELGTEVNISHGDSNFYLQS 112
                S T+ A  L DI++KL +   I         + K N+   E+N S+       Q 
Sbjct: 61  NQEEISFTIYAKDLIDIIKKLSEDIIIEFIIESSKIYIKVNKNSFELNTSNH------QD 114

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP    P  K  + +   ++   VLK+L+E T F+M +++IR YLNG++  I++    + 
Sbjct: 115 FPS--LPKIKNSDII---KIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNS--IV 167

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLN 231
            VATDGHRL++ +V     ++   S+I+PRKAV E+ ++L+      + + LS++  +L 
Sbjct: 168 VVATDGHRLSIGKVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLI 227

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
             + ++  RLIDG FPNY  V+P + +  + +N      ++ + SI    R + VKL   
Sbjct: 228 SNNTTIISRLIDGNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFK 287

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + KL +   + + G+A   +N+   +  ++I FN  YL+ I++ + ++E+  + +V   D
Sbjct: 288 NSKLHI-FSHSERGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEI--NMIV--PD 342

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + S  +   + D            YV+MPMRI
Sbjct: 343 GKSQSCLLSSMNDDIYQ---------YVVMPMRI 367


>gi|332829626|gb|EGK02272.1| DNA polymerase III, beta subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 374

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 102/344 (29%), Positives = 176/344 (51%), Gaps = 8/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L  L    ++I  KNT+P+    LL+     L + A+  E  +  ++  +
Sbjct: 1   MKFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLTLTAADAETRLVTSLEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D +++L +         + L T +   +G  NF  QS    ++P
Sbjct: 61  EADGNGKFAVNAKNLLDPLKELPEQPLTFEINNDNLETFIFFHNGKYNFIGQS--GDDYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             KE +E   S  +   VL   + RT FA A +E+R  +NG+FF I  EDL    VA+DG
Sbjct: 119 QPKELKETAVSLTIEPQVLFAGINRTLFASADDELRPVMNGVFFDITPEDLTF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+ A+  S I+P+K    +  IL  +  +V++   E+  ++ + S +M+
Sbjct: 177 HKLVRCKT-LSAKGAERASFILPKKPANLLKAILPKEAETVEIKFDENNAYIKMSSYTMT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R I+G +PNY +VIP +N  ++ ++      A+ RVS+ S+     +KL L+   + +T
Sbjct: 236 CRFIEGRYPNYNSVIPQNNTNKVILDRQTFLNALKRVSVFSNQASNLIKLQLTDRNIVVT 295

Query: 299 VDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             + D   A  E++   Y   PM+I F   +L+EI++NI S ++
Sbjct: 296 AQDIDFSTAAEETIACEYTGSPMNIGFKSSFLIEILNNIPSTDI 339


>gi|88802627|ref|ZP_01118154.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P]
 gi|88781485|gb|EAR12663.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P]
          Length = 372

 Score =  150 bits (378), Expect = 4e-34,   Method: Compositional matrix adjust.
 Identities = 101/344 (29%), Positives = 173/344 (50%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L+I AS  E  ++  +   
Sbjct: 1   MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENNLKISASDLETTMSSVVTVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL D ++   D  Q   FK  E    + IS     + +  F   EFP 
Sbjct: 61  SDSTGSIAVSARLLLDTLKTFPD--QPLTFK-TEGANTIEISSDQGKYDMAYFGGDEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +++L   + +T FA   +++R  ++G+FF  + + L    VATD H+
Sbjct: 118 ALSLPSPSKTVIPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   +  D+ A   +    I+P+K +  +  IL   DS V +  +++      +++ +  
Sbjct: 176 LVKYSRTDVTAD--QTAEFIMPKKPLNLLKGILGGSDSDVTIEYNDANAKFTFDNIVLVC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L V+  +   +V RVSI SS     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   KA E ++  Y    M I FN ++L E++ N+SS EV+
Sbjct: 294 EDLDFANKADERLSCDYQGDDMQIGFNSRFLSEMLSNLSSTEVL 337


>gi|291532566|emb|CBL05679.1| DNA polymerase III, beta subunit [Megamonas hypermegale ART12/1]
          Length = 346

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 184/344 (53%), Gaps = 6/344 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT E+ ++++ +    + +  +  +P+   + ++A+   +E++ +  EI I   I A 
Sbjct: 1   MKITCEKKELVQAIQTVLKAVPSRPQMPILSGIYIKAHQNYIELQGTDYEISIICKIKAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+I +    LY++VR L  G  +   K N+    VNI    + F L +  E+EFP 
Sbjct: 61  IETEGTIVLPGKYLYEVVRTLP-GEYVEI-KNNDSDNSVNIRSNSAQFNLLNMQENEFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  +    F L + +  N +++T FA AT+E R    G    I +E++ +   AT+ HR
Sbjct: 119 IEPLKGQIDFNLKNDIFLNFIKKTSFACATDESRPVFTGCLMDITDENIVMA--ATNMHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+ + +I         II+P K + E   I +S+  + +++S + ++I  + E++ +  
Sbjct: 177 LALIKENINYISDNNIKIIIPAKILNEFTHIFNSEIPTDIQISCTHNKISFSYENIYVIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
           RLI+G+FP+Y  VIP      + +N    + A+DRVS++S S     +      + + ++
Sbjct: 237 RLIEGQFPDYNRVIPKEFKTHVNINKNEFQSALDRVSLISRSGDYNIIHFEFVDNIVRIS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            DNP++GKA E++NV      ++I FN KY+++++  I ++  +
Sbjct: 297 SDNPNIGKAEETINVDIEGPGINISFNAKYIIDVLKAIDAENFI 340


>gi|239834278|ref|ZP_04682606.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239822341|gb|EEQ93910.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 351

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 36/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++++RS +   L    R IE +N+IP+  +VLL   DG L +  +  ++EIT ++P  
Sbjct: 2   MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV   +L DI +++     +     +  G  + ++ G S + L   P  +FPS
Sbjct: 62  DCHSGSATVPGKMLADIAKRVTGDITLELDAASS-GGRLTVASGRSRYKLDVLPAEDFPS 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               ++  + EL    L  LV     A++T++ R +L+G+FFH +E   +L AVATDGHR
Sbjct: 121 FSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEG--RLVAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     D   +      +I+P K V  + +        +K+SLS++++ +      ++ +
Sbjct: 176 LVRNYGD---EGDTEYGVILPSKLVAMLPK------GVIKLSLSQTKVRIEAGGTVITSK 226

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G FP++  +IP  N   L V+   L  A+ RVS +++   +AVKL + +D LC+++ 
Sbjct: 227 LIEGTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEV-ADVLCLSIA 285

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           +    KA + +    +  P+ I FN KYL +++  +      + +V F      S   + 
Sbjct: 286 D----KAQDEIEGELDGEPLTIGFNPKYLQDMLGAVD-----EKDVCFAFSDGMSPAVLT 336

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G+            N   V+MP+R+
Sbjct: 337 GQG-----------NWTGVVMPLRV 350


>gi|150014894|ref|YP_001307148.1| DNA polymerase III subunit beta [Clostridium beijerinckii NCIMB
           8052]
 gi|149901359|gb|ABR32192.1| DNA polymerase III, beta subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 366

 Score =  149 bits (377), Expect = 5e-34,   Method: Compositional matrix adjust.
 Identities = 110/392 (28%), Positives = 200/392 (51%), Gaps = 35/392 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T E+  ILE +    + I  K+T+P+   + + AN+  + +  S  ++ I   + A+
Sbjct: 1   MIFTCEKQKILEGISIVQKAITGKSTMPILEGIYINANNSTITLIGSDMDVSIQTLVDAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI + A +  +I+RKL +        EN+L   + I+   S F +     +EFP 
Sbjct: 61  IMEEGSIVIDAKIFGEIIRKLPNSTIRIETMENQL---IKITCEKSIFDVVYMNTNEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        +  ++LKN+++ T FA+A +E R  L GI F +  ++L L  VA DG+R
Sbjct: 118 LPEINENLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVRNKNLNL--VALDGYR 175

Query: 181 LAV------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           LA+       ++DI         +++P K + E+ +IL   D  V ++ + + I  N++ 
Sbjct: 176 LAIKSEFLDTDIDI--------EVVIPGKTLNEVSKILEDIDEIVDITFTNNHILFNLKR 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
             +  RL++G+F NY++++P  +   + VN   L+ A++R S+M+       +KL L  D
Sbjct: 228 TKIISRLLEGKFINYKSLLPQEHKLFVNVNRQELQNAIERASLMAKDGNTNLIKLDLHQD 287

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +T  N  +GK  + +++      ++I FN KYLL+++ N+      D+EVV ++ S 
Sbjct: 288 NLVIT-SNSQLGKVRDEISIKLQGDEIEIAFNSKYLLDVLKNME-----DNEVVMKMTSG 341

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   I          + N  NA Y+++P+R+
Sbjct: 342 ISPCVIE---------EHNNENAKYLVLPVRL 364


>gi|325475138|gb|EGC78323.1| DNA polymerase III [Treponema denticola F0402]
          Length = 367

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 100/341 (29%), Positives = 178/341 (52%), Gaps = 5/341 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+ +R  +L+ +  A  II  K  + +  +VLL   DG L IKA+  ++     IP +
Sbjct: 1   MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       I+  L  G      K+ +L  +  +    + F L++ PE++FP+
Sbjct: 61  IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVKK--AKFQLKTIPENDFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V  F + +   K ++ +T F+++ +E RY++NG++   N+ED  L  VATDG R
Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIE-NKED-TLYFVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +    I +   +IVP K +  I+   +S + +++V + E  I  N  S   S  
Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILN-IINKRASDEGNIEVGIGEKNIFFNFNSYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ VIP + +    V+ T   +A+ RVS++  ++ + + L++    L ++  
Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             ++G A E +   Y+   + +  NY Y+ + +  I+SD +
Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITSDRI 336


>gi|256820579|ref|YP_003141858.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582162|gb|ACU93297.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271]
          Length = 374

 Score =  149 bits (376), Expect = 7e-34,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 168/344 (48%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 1   MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL DI++   +       KEN +   + IS    N+ L      EFP 
Sbjct: 61  SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   VL   V++T FA   +++R  ++GI F  +E  L    V TD H+
Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   E +DI A  A     I+P+K +  +  IL+  ++ V V  +ES    + + +    
Sbjct: 176 LVKYERLDIKANEAA--DFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY  VIP  N  +L +N +    +++R+S+ S+     V+L ++   L ++ 
Sbjct: 234 RLIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   K  E     Y    ++I FN K+L E+I+N+ SDE++
Sbjct: 294 EDVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEIL 337


>gi|213964020|ref|ZP_03392264.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno]
 gi|213953352|gb|EEB64690.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno]
          Length = 384

 Score =  149 bits (376), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 104/344 (30%), Positives = 168/344 (48%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 11  MKFIVSSSYLLKKLQVFGGVINSNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 70

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL DI++   +       KEN +   + IS    N+ L      EFP 
Sbjct: 71  SDSQGSIAVSAKLLIDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 127

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   VL   V++T FA   +++R  ++GI F  +E  L    V TD H+
Sbjct: 128 PVALPEASKVTMLGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 185

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   E +DI A  A     I+P+K +  +  IL+  ++ V V  +ES    + + +    
Sbjct: 186 LVKYERLDIKANDAA--DFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFIC 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY  VIP  N  +L +N +    +++R+S+ S+     V+L ++   L ++ 
Sbjct: 244 RLIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKVAGSSLVISA 303

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   K  E     Y    ++I FN K+L E+I+N+ SDE++
Sbjct: 304 EDIDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEIL 347


>gi|11320895|gb|AAG33943.1|AF197883_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  149 bits (375), Expect = 8e-34,   Method: Compositional matrix adjust.
 Identities = 99/387 (25%), Positives = 203/387 (52%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  +     ++ L    R I +  + P+  ++L+   + +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
              V G+ TVS+  L DI R   + + ++     EL   ++ I    S + L++ P   F
Sbjct: 61  QHYVSGNTTVSSRKLLDICRHSLNSSNMNI----ELHANKIYIISDTSQYILRTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+     Y+  F + S++LK+++E+THF+M  +++RYYLNG+   +    L +  VAT G
Sbjct: 117 PNHNNFHYISEFYIDSNILKSMIEKTHFSMGKQDVRYYLNGMLLEMINNSLYM--VATAG 174

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  
Sbjct: 175 YRLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI+G+FPNY ++     +  + +NC  L+Q++ R +I++  +   V++ + +++  +
Sbjct: 235 TAQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKV 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             DN +   A ++ N+ Y    + I  N  Y+L+I+++I+S     + ++  L++SN+S+
Sbjct: 295 LSDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSINS-----ENILLFLNNSNNSI 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I           +N  +  Y++M ++
Sbjct: 350 QIEA---------ENDASTIYIVMLLK 367


>gi|315223688|ref|ZP_07865538.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga
           ochracea F0287]
 gi|314946263|gb|EFS98262.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga
           ochracea F0287]
          Length = 374

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 103/344 (29%), Positives = 168/344 (48%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 1   MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL DI++   +       KEN +   + IS    N+ L      EFP 
Sbjct: 61  SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   VL   V++T FA   +++R  ++GI F  +E  L    V TD H+
Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   E +DI A  A     I+P+K +  +  IL+  ++ V +  +ES    + + +    
Sbjct: 176 LVKYERLDIKANEAA--DFIMPKKPLNILKGILAGSETEVTIEYNESNAKFSFDDMEFIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY  VIP  N  +L +N +    +++R+S+ S+     V+L ++   L ++ 
Sbjct: 234 RLIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   K  E     Y    ++I FN K+L E+I+N+ SDE++
Sbjct: 294 EDVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDSDEIL 337


>gi|310825636|ref|YP_003957993.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612]
 gi|308737370|gb|ADO35030.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612]
          Length = 371

 Score =  149 bits (375), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 188/342 (54%), Gaps = 7/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +  R  ++  L  A + +  K T+PV   +L Q  +  L + ++  EI +  +IPA+
Sbjct: 1   MKFSCSRDALINALSIAQKGVSNKTTLPVLEGILFQVYNNQLVLTSTDLEIGVQTSIPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD+ G I +S++L+ +++RKL  G ++ F K++    +V I    SNF ++ FP  EFP 
Sbjct: 61  VDMDGEIILSSNLITEVIRKLS-GEEVFFQKDD--SNQVKIECLLSNFTIKGFPTDEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    +SF + + VLK ++  T F++A  E    L G+   I  + + L  +A DG+R
Sbjct: 118 FPEVIEEHSFVIEAGVLKEMIRGTIFSVAVSENIPVLTGLKMEIENDAISL--IALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++    +   I    S+I+P K++ E+ ++LS  + +V V  S+++I   + +   + R
Sbjct: 176 LSLKRGKLKEAIDGSISVIIPGKSMNELNKLLSGYNENVIVKFSKTQIFFEMGNTQFTSR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L++GEF NY+++IP     +++V+   L ++ +R ++++   +   +K+  + D+L +T 
Sbjct: 236 LLEGEFINYKHIIPTEKATQVKVSRKLLLESSERAALLAREGKNNLIKMDFNIDQLILT- 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            N ++G   E + +     P+ I FN K+ ++ +  I  DE+
Sbjct: 295 SNAEIGDVFEVIPIENQGDPIKIAFNSKFFIDALKVIDRDEM 336


>gi|42525749|ref|NP_970847.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405]
 gi|41815760|gb|AAS10728.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405]
          Length = 367

 Score =  148 bits (374), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 99/341 (29%), Positives = 178/341 (52%), Gaps = 5/341 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+ +R  +L+ +  A  II  K  + +  +VLL   DG L IKA+  ++     IP +
Sbjct: 1   MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       I+  L  G      K+ +L  +  +    + F L++ PE++FP+
Sbjct: 61  IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVKK--AKFQLKTIPENDFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V  F + +   K ++ +T F+++ +E RY++NG++   N+ED  L  +ATDG R
Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIE-NKED-TLYFIATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +    I +   +IVP K +  I+   +S + +++V + E  I  N  S   S  
Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILN-IINKRASDEGNIEVGIGEKNIFFNFNSYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ VIP + +    V+ T   +A+ RVS++  ++ + + L++    L ++  
Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             ++G A E +   Y+   + +  NY Y+ + +  I+SD +
Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITSDRI 336


>gi|163755511|ref|ZP_02162630.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1]
 gi|161324424|gb|EDP95754.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1]
          Length = 372

 Score =  148 bits (373), Expect = 1e-33,   Method: Compositional matrix adjust.
 Identities = 97/343 (28%), Positives = 179/343 (52%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L Q N+  L++ AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFQLNENELKVSASDLETTMSSVLTVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I V A LL D ++   +   ++F  E+    E++ +HG   + L     +EFP+
Sbjct: 61  SDSTGNIAVPAKLLLDTLKTFPE-QPLTFVVEDNNTVEISSNHG--KYALAYADGNEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           + E +   +  +A  VL   + +T FA   +++R  ++G+FF  + E+L    VATD H+
Sbjct: 118 SVELKEPSATTIAGHVLSTAISKTIFASGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   +  D+  Q +++   I+P+K +  +  IL   +  V +  ++S      ++  +  
Sbjct: 176 LVKYQRTDL--QASQVAEFIMPKKPLNLLKGILGGSEDDVVIEYNDSNAKFTFDNTVLVC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +N      +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLEINRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L E+++N+ +D+V
Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLGADDV 336


>gi|239787351|emb|CAX83828.1| DNA polymerase III subunit beta [uncultured bacterium]
          Length = 372

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 176/346 (50%), Gaps = 9/346 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV R   ++ L     +IE+K  +PV  H LL+A    + I  +  +I I+    A 
Sbjct: 1   MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDIVISEECRAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
             + GS+ V   LL+DIV++L+    +SF  E++L     +  G S F L   P  +FP 
Sbjct: 61  TQIEGSLCVPGVLLHDIVKRLEGYDTLSFSHEDQLF----LRCGRSEFRLSVLPAEQFPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +  +VLK +++     M  ++    LN +F H   E   L  V+TD H+
Sbjct: 117 VSQLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQ 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES----L 235
           LA++++ +  ++     ++V RKA+ EI R+L   ++  V +  S +RI  ++ +    +
Sbjct: 177 LALSKISLEKKLDLQTGLVVGRKAITEIRRLLLDDNAKQVTLGASHARIQCDVVTDDLVI 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL+DG +P Y  V+   ++  +  N + L+ A++R+ ++  +  + + L+ S++ +
Sbjct: 237 MFTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNLM 296

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            MT  + D G   E + + ++  P  I  N  YLL ++  I +++V
Sbjct: 297 TMTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDTEQV 342


>gi|15606912|ref|NP_214293.1| DNA polymerase III beta chain [Aquifex aeolicus VF5]
 gi|3913514|sp|O67725|DPO3B_AQUAE RecName: Full=DNA polymerase III subunit beta
 gi|2984154|gb|AAC07688.1| DNA polymerase III beta chain [Aquifex aeolicus VF5]
          Length = 363

 Score =  148 bits (373), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 205/387 (52%), Gaps = 26/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V+R ++ E+L  A    E+K  +P+  + LL A +  L ++A+  E  +  ++   
Sbjct: 1   MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + V +  LYDIV+ L + A +    E   G ++ I+ G S + L + P  +FP 
Sbjct: 61  VEEEGEVCVHSQKLYDIVKNL-NSAYVYLHTE---GEKLVITGGKSTYKLPTAPAEDFPE 116

Query: 121 TKEEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E   V   E L+ ++L N +E+  +A+A EE    L G++    E+  ++  V +DGH
Sbjct: 117 FPE--IVEGGETLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYED--RIHFVGSDGH 172

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           RLA+ E   + + +K   +++PRK++  + ++++  +D +++ S  ES  + +     ++
Sbjct: 173 RLALYEP--LGEFSK--ELLIPRKSLKVLKKLITGIEDVNIEKSEDESFAYFSTPEWKLA 228

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           VRL++GEFP+Y +VIP     E+      + + + R+  +S  ++  VK++LS +     
Sbjct: 229 VRLLEGEFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFE 288

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +P+ G+A E + V Y   P +I FN KYL+E +D   S     + V F+  + +++  
Sbjct: 289 FADPEFGEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDS-----ERVWFKFTTPDTATL 343

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +D + +  K        ++MPMR+
Sbjct: 344 LEAEDYEKEPYK-------CIIMPMRV 363


>gi|288817885|ref|YP_003432232.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787284|dbj|BAI69031.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6]
 gi|308751484|gb|ADO44967.1| DNA polymerase III, beta subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 361

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 199/385 (51%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V+R + L+ L  A    E+K+ +PV  + LLQA    L +KA+  E  +T ++ A 
Sbjct: 1   MRFSVDREEFLDALTKAKSATEKKSALPVLNNFLLQAQKDRLIVKATDLENFLTFSVRAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V+A  L  +++ +      +   E++L    +I+ G S F L +    +FP 
Sbjct: 61  VYEEGVVAVNADKLTSVIKAIPSATLQAQLLEDKL----SITGGRSKFNLTALEAEDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +   S ++ +      +++T +A++ E+ RY L G++ H  E   K   V +DGHR
Sbjct: 117 FPEVKV--SSQIPAVDFLKAIDKTEYAISKEDTRYALQGMYIH--EHKGKTHFVGSDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+        +     +++PRK++  I  +L      + +    S  HL  E   +S+R
Sbjct: 173 LALYFTPSPFSL----ELLIPRKSLKVIEGLLKDYIGEISIGKDGSFAHLQGEDFQLSIR 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GE+P+Y +VIP S + E+ +N +    A+ R+S ++      VK+SL  +     + 
Sbjct: 229 LLEGEYPDYLSVIPESFNIEVLINKSEFLSALKRLSAIAESSAFPVKISLQDNLAVFEIT 288

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            P+ G+  + +++ Y++ PM++ FN KYL+E +++  +     ++V  ++   +S++ + 
Sbjct: 289 EPEYGEGRDEVDIEYSQEPMELGFNGKYLIEALESFDT-----EKVWLKIVDPDSAIVLD 343

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +DK+S            ++MPMRI
Sbjct: 344 SEDKESDPY-------MCLVMPMRI 361


>gi|81251105|gb|ABB69900.1| DNA polymerase III beta chain [Nitrosomonas sp. OZK11]
          Length = 373

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 118/394 (29%), Positives = 198/394 (50%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDIL-ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AI 57
           MK+T+   D+L + L     I+ER++T+P+  + L++  +G L +  +  EIE     +I
Sbjct: 1   MKLTITNRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGKLTLVTTDLEIEAEAISSI 60

Query: 58  PASVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFP 114
           P  ++  G++  TVS   L DI+R L     I   + EN L     I  G S F LQ  P
Sbjct: 61  P-ELENQGTLQTTVSVKKLQDILRALPANTAIELTRSENRL----QIVSGKSRFSLQLLP 115

Query: 115 ESEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             +FP      E    S+ L   V K  ++R   AMA +++RYYLNG+   I  ED K+ 
Sbjct: 116 AEDFPRMIRDNEPCSMSYTLPQRVFKKQLQRVSHAMAQQDLRYYLNGLLLLI--EDNKMT 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRL +  + +     K  +II PRK V E++R L   D  V++ +   ++    
Sbjct: 174 LAATDTHRLGITSIALKGNFEKSETII-PRKTVLELIRQLEDSDRPVEIEIYPKKVCFRF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSL 290
               +  ++I G+F +++  IP ++     VN  +   A+ R +I+SS     + V L++
Sbjct: 233 PDAVLISKVISGKFLDFRRAIPQTSVFRFDVNRLDFFHALQRTAIISSSNDLFRNVHLNI 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +S KL ++  N +  +A E + + Y++  +D  FN  YL+E+++N+ S     ++V    
Sbjct: 293 TSGKLNISAKNKEQEEAQEEIEIVYSDETIDTSFNIVYLMEVLNNLDS-----EQVTCSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +S  S++ I   D +            +VLMPMR
Sbjct: 348 ESMQSAILITLPDDEQFK---------HVLMPMR 372


>gi|85857847|ref|YP_460049.1| DNA polymerase III subunit beta [Syntrophus aciditrophicus SB]
 gi|85720938|gb|ABC75881.1| DNA polymerase III, beta chain [Syntrophus aciditrophicus SB]
          Length = 372

 Score =  147 bits (372), Expect = 2e-33,   Method: Compositional matrix adjust.
 Identities = 97/350 (27%), Positives = 183/350 (52%), Gaps = 11/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ +     I+ERK+T+P+  ++LL+  D  ++I A+  E+ +     A 
Sbjct: 1   MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+IT+SA  L++++R++Q G  I F  ++    ++ +S   + + +      EFP+
Sbjct: 61  IISSGAITLSAKKLFEMIREIQ-GDSIHFSCDDH--DQITLSSQKAVYRIPGISADEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
              +E +  + + +S+LK L+ +  FA++ +E R  L G        E+   L  VATDG
Sbjct: 118 VAYDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDG 177

Query: 179 HRLA----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           HRLA    V E +    + K   II+PRK + EI +++ ++   + +        L   +
Sbjct: 178 HRLARSYEVIEGNSPFTLEK--GIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTAN 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             + V LID  +P+Y  VIP      +  N   L   + R+ ++S+ +   V L+L++++
Sbjct: 236 TLLKVSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNR 295

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           + M   NPD+G+A + + V Y    + + FN  YL++ I+ I  +EV+ D
Sbjct: 296 MIMNSTNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIREEEVLFD 345


>gi|332296671|ref|YP_004438593.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM
           12168]
 gi|332179774|gb|AEE15462.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM
           12168]
          Length = 367

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 97/341 (28%), Positives = 175/341 (51%), Gaps = 5/341 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T +R  +++ +  A  II  KN + +  +VL  A +  L IKA+  ++     IP  
Sbjct: 1   MRFTFDRDAMVKEIAIAQEIISTKNALSILSNVLFIAENNTLAIKATDIKVNFETKIPVV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ T+       I+  L  G +I F +E+   T   IS     F L+S    +FP 
Sbjct: 61  IEEEGTTTIFCDKFMSILASLPPG-EIEFIQEDIKVTIKPISKK-VKFQLKSMASDKFPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E V  F++ +   K ++ +T FA++ +E RY++NG+FF   +++L L  V+TDG R
Sbjct: 119 FSSAENVPYFDVPADQFKEMITQTIFAVSDDETRYFMNGVFFEKKDDNLNL--VSTDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +   I   PS+IVP K +  +L+  SS +  + +++ +  I++   +   S  
Sbjct: 177 LAFSSKALCQGITDFPSVIVPPKVLTAVLKRASS-EGMISLAIVDKMIYIKFGNYHFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FPNYQ VIP +      +  ++L  A+ RV+++   + + V   L+   L +T  
Sbjct: 236 LLEGQFPNYQRVIPETQAHSFELQKSDLADALKRVALLVDQKARRVYFELNPGTLTITSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             D+G A E +   Y+   + I  NY Y+ E +  ++ D +
Sbjct: 296 ESDIGVAKEEIPCQYDGETVTIAMNYLYIDEPMKVMNCDRI 336


>gi|308273671|emb|CBX30273.1| hypothetical protein N47_D30820 [uncultured Desulfobacterium sp.]
          Length = 364

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 102/379 (26%), Positives = 200/379 (52%), Gaps = 22/379 (5%)

Query: 12  ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71
           ++L     I  RK  + ++  VL++A D  + I ++  E   TG   A V+  G+I ++A
Sbjct: 3   DVLSKLQTIAGRKTNLAITTAVLIRATDSGINISSTDMETGFTGFYSAEVEREGAIAINA 62

Query: 72  HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131
            +L++I++   +  +I   + + L  E+ ++  +  + +      +FP   + E +  F+
Sbjct: 63  KMLFEIIKDFPN-EEIYINEIDNLWIEI-LNQNNVEYKMAGMNPDDFPGIPDVENITYFD 120

Query: 132 LASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDL--KLCAVATDGHRLAVA--EV 186
           + +SV K+++E+T F    TEE R ++NG++     ED   KL  V+TDG RLA    E 
Sbjct: 121 IKASVFKDMIEKTIFITGITEEKRPHINGVYLEKILEDGINKLRLVSTDGSRLAKVDCEY 180

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
           +   ++++ P II+ +K + ++ + L + + ++K+  + S   L  E+ ++ +RL++G F
Sbjct: 181 ENALELSEEPGIIISKKGLSDLNKFLDT-NKNIKIGYNNSNFVLKKENETVIIRLLEGNF 239

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P Y+ +I       + +    L   + R+SI +S   + V  +   +KL ++  NPD+G+
Sbjct: 240 PEYKYIIDKKEAFSITIERQKLLMMLKRMSIFTSDNFKGVIFNFDKEKLLVSSTNPDLGE 299

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           + E M + Y+  P++I FN +Y ++ ++ I      DD V+  L +  S   +     ++
Sbjct: 300 SKEEMIINYDFDPLEIAFNVRYFIDTLNVIK-----DDNVIIMLINEKSPCLV-----EA 349

Query: 367 KNNKDNKVNAFYVLMPMRI 385
           +NNK    N   V+MPMRI
Sbjct: 350 ENNK----NFLSVIMPMRI 364


>gi|313122777|ref|YP_004033036.1| DNA polymerase iii, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279340|gb|ADQ60059.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 375

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 182/350 (52%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +D+     GSI V+AHL  +IVRKL  G + +F  E + G ++ I+   +++ +     S
Sbjct: 61  IDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294
              RL++G +P+   ++P  +   ++   ++L Q + R S+++   R  AV+++L+ +D+
Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   N P++GK  E +         + I FN  Y+   +    +D V+
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344


>gi|302390799|ref|YP_003826619.1| DNA polymerase III subunit beta [Acetohalobium arabaticum DSM 5501]
 gi|302202876|gb|ADL11554.1| DNA polymerase III, beta subunit [Acetohalobium arabaticum DSM
           5501]
          Length = 365

 Score =  147 bits (371), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 101/386 (26%), Positives = 205/386 (53%), Gaps = 25/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R +  + +    + I  K+T+P+   +L++  +  L++  +  E+ I   + A+
Sbjct: 1   MQIKIDRKNFYDGIQTVRKAISSKSTLPILSGILIETQEKKLKLVGTDLELGIECRVDAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A+ L +IVR+L +   ++   K+N+    + IS G S F +   P  E+P
Sbjct: 61  IIKDGAIVLPANHLANIVRELPNKELELELKKDNK----IEISCGLSQFKIHGSPADEYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E      + L+    + ++ R  FA + +E R +L G    I+ E+LK+  VATD +
Sbjct: 117 LLPEVGSGIEYTLSQEKFQAMINRIKFATSDDESRPFLTGGLLSIDNENLKM--VATDSY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  ++++   + K   II+P K + E+ ++L+S+D  ++  +++++I      +++  
Sbjct: 175 RLAYTQLELDKDL-KNEKIIIPSKTLNELSKLLNSEDE-IRFLITDNQILFEFSEITIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ VIP ++  E+++    L  A  R ++++      +K    +DKL +  
Sbjct: 233 RLIEGQFPNYKQVIPDNHKTEIKLKKKELLNATKRSALVARNNSNIIKTKFQNDKLMIES 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSSVF 358
           + P++G+A E ++   +    +I FN  YL++++      +V+D +E++  L    S   
Sbjct: 293 NAPEVGQAYEELSTSQHGDDTEIAFNANYLIDVL------KVIDNEEILIELSGELSPGV 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I+  D D         N  +V+MP+R
Sbjct: 347 IKEVDND---------NYIHVIMPVR 363


>gi|116513230|ref|YP_812136.1| DNA polymerase sliding clamp subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092545|gb|ABJ57698.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 375

 Score =  147 bits (370), Expect = 3e-33,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 182/350 (52%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L+  +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL  G + +F  E + G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294
              RL++G +P+   ++P  +   ++   ++L Q + R S+++   R  AV+++L+ +D+
Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   N P++GK  E +         + I FN  Y+   +    +D V+
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344


>gi|160932423|ref|ZP_02079813.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753]
 gi|156868382|gb|EDO61754.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753]
          Length = 440

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 107/349 (30%), Positives = 188/349 (53%), Gaps = 17/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MKI  ++S ++E + +  R +  K+T+     +LL+   +G L++     E+ IT  I A
Sbjct: 68  MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELGITTVIEA 127

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G + +SA L  DIVR+L D   ++   + ++ T+  I+ G S F +   P SE+P
Sbjct: 128 QVDEPGEVVLSARLFGDIVRRLPD-ETVTILVDEKMITQ--ITCGPSEFSIVGIPSSEYP 184

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S +L S +LK+++ +T FA+A  + +    G  F+I    ++L +V  DG+
Sbjct: 185 ELPSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRLVSV--DGY 242

Query: 180 RLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+    I  +  +   I  +VP K + E++++L  +D +V++ +    I   IE  S+
Sbjct: 243 RLAMRTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSV 302

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK-- 294
             RL++GEF +Y+  IP     E+ VN  NL  +V+RVS++ + R+++ V+   S D   
Sbjct: 303 ISRLLEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEI 362

Query: 295 --LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
              C+T     +GKA + ++       ++I FN +YLL+ + N  +DEV
Sbjct: 363 KISCVT----SIGKANDELSAQITGPEVEIGFNNRYLLDALRNADTDEV 407


>gi|11320915|gb|AAG33953.1|AF197893_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 104/388 (26%), Positives = 203/388 (52%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++    ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNIKNKIFIQNLQKINRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLL 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEF 118
            + + GS TVS   L DI R     + I    K+N++    +I    S++ L + P   F
Sbjct: 61  QEHISGSTTVSGRKLLDICRHSLHSSDIQIELKKNKM----HIISDKSHYVLTTLPADNF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      +    + S +LK ++E+T F+M  +++RYYLNG+   + + D  L  VATDG
Sbjct: 117 PNNDNFNRISKIFIHSHILKEMIEKTQFSMGKQDVRYYLNGML--LEKIDHSLNMVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +RLA+A+  I+ +I  +    I++ R+ + E+ ++L+     +K+ + ++ I + IE   
Sbjct: 175 YRLAIAKT-IMQEIKIIQDFKIVITRQGIIELYKLLNISTKLIKILIGKNHIRIYIEQFI 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +LI+G+FPNY+++        +  NC  L+Q++ R SI+S  +   V++ + + +  
Sbjct: 234 FTAQLIEGKFPNYESIFLIKKRNGIMFNCQLLKQSLLRASILSHEKFCGVEIHIKNGQFK 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  DN +   A +  N+ Y    ++I  N  Y+L+I++ ISS     + ++F L+ S++S
Sbjct: 294 VLSDNQEEEIAEDMFNINYIGPEIEISINVYYILDILNAISS-----ENILFFLNHSHNS 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + I           +N  +  YV+M ++
Sbjct: 349 IQIEA---------ENDASTIYVVMLLK 367


>gi|315273165|ref|ZP_07869212.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120]
 gi|313616216|gb|EFR89294.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120]
          Length = 381

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 186/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLV 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I  +D KL
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWII--KDNKL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETNIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|217965933|ref|YP_002351611.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23]
 gi|255022506|ref|ZP_05294492.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-208]
 gi|290892038|ref|ZP_06555035.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071]
 gi|217335203|gb|ACK40997.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23]
 gi|290558632|gb|EFD92149.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071]
 gi|307569525|emb|CAR82704.1| DNA polymerase III, beta subunit [Listeria monocytogenes L99]
          Length = 381

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 101/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|315286762|ref|ZP_07872176.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596]
 gi|313630891|gb|EFR98583.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596]
          Length = 381

 Score =  147 bits (370), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LDNGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|313625801|gb|EFR95417.1| DNA polymerase III, beta subunit [Listeria innocua FSL J1-023]
          Length = 381

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 186/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I  +D KL
Sbjct: 117 GLDSMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWII--KDNKL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|255520068|ref|ZP_05387305.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTXFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|116871424|ref|YP_848205.1| DNA polymerase III subunit beta [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740302|emb|CAK19420.1| DNA polymerase III, beta subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 381

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|218781945|ref|YP_002433263.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763329|gb|ACL05795.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 376

 Score =  146 bits (369), Expect = 4e-33,   Method: Compositional matrix adjust.
 Identities = 108/396 (27%), Positives = 195/396 (49%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ +   L+ +     I  RK T P++ +VL+ A    + + A+  EI   G  PA+
Sbjct: 1   MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+IT+    L++IVR+   GA      EN     V I      + +     ++FP 
Sbjct: 61  VEEEGTITIPGKKLFEIVREFPHGAIDVRDLENGW---VQIFKDKVQYKIVGMDPNDFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHF--AMATEEIRYYLNGIFFH--INEEDLKLCAVAT 176
             E E +  FEL S V  +++E+T+    M++EE R +L G++    + EE   L  V+T
Sbjct: 118 LPEVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVST 177

Query: 177 DGHRLAVAEVDIVAQIAKMP-------SIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           DG+RLA   VD +      P        +I+P+K + EILR+ S     + + + ++   
Sbjct: 178 DGNRLA--RVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRV-SEGGGKISLGVQKNYFV 234

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  E+ ++  RL++GE+P+Y  VIP   +    +        + R+SI+ S R +AV+  
Sbjct: 235 IQKEAETIIGRLVEGEYPDYNLVIPNDLETFFEIEKQPFVSILKRMSILCSERYRAVRFK 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   +L ++V+NP++G + E M + +N    +  FN ++ ++ ++ + SD +     V  
Sbjct: 295 VDPQRLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKSDMI----KVNI 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           LDSS   +    +D               V+MPMR+
Sbjct: 351 LDSSKPCILEGSEDP----------RYLSVIMPMRM 376


>gi|289433375|ref|YP_003463247.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169619|emb|CBH26153.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313640126|gb|EFS04744.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL S4-171]
          Length = 381

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLIT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LDNGQVEVSSNSPEVGNVSE--NVFSQSFTGEEVKISFNGKYMMDALRAFEGDDI 347


>gi|16799081|ref|NP_469349.1| DNA polymerase III subunit beta [Listeria innocua Clip11262]
 gi|16412423|emb|CAC95235.1| DNA polymerase III, beta chain [Listeria innocua Clip11262]
          Length = 381

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 186/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I  +D KL
Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWII--KDNKL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|325123495|gb|ADY83018.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 233

 Score =  146 bits (369), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 78/249 (31%), Positives = 141/249 (56%), Gaps = 27/249 (10%)

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207
           MA +++R+YL G    I+E  L+  AV TDGHRLA+ E+   +  +++   IVPRKAVGE
Sbjct: 1   MAVQDVRFYLTGTLLEIDENQLR--AVTTDGHRLALCEITASSTSSQLVQAIVPRKAVGE 58

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLS-----------MSVRLIDGEFPNYQNVIPCS 256
           + R+LS +D  + + +    +++ I + S            + +LIDG+FP+Y+ VIP  
Sbjct: 59  LQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRG 118

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            DK + ++    +Q++ RV+I+S+ +++ V L+ + D L +  +NP+  +AIE + + Y 
Sbjct: 119 GDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQ 178

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             P+++ FN +YLL+++  +       D+V   +  +N SV ++      +         
Sbjct: 179 NIPLEMSFNAQYLLDVLGVLDG-----DDVNMSMTEANQSVLVQDPAHPDQT-------- 225

Query: 377 FYVLMPMRI 385
            YV+MPMR+
Sbjct: 226 -YVVMPMRV 233


>gi|218678820|ref|ZP_03526717.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 894]
          Length = 148

 Score =  146 bits (368), Expect = 5e-33,   Method: Compositional matrix adjust.
 Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 14/162 (8%)

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
           S+++I + I S+ M+ +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R 
Sbjct: 1   SDAKIRMTIGSIVMTSKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERG 60

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +AVKL+LS  +L +TV+NPD G A E + V Y+   M+I FN KYLL+I   +S      
Sbjct: 61  RAVKLALSEGQLMLTVNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG----- 115

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +E +F L  + S   IR    D         +A YVLMPMR+
Sbjct: 116 EEAIFLLADAGSPTLIRDTAGD---------DALYVLMPMRV 148


>gi|325124857|gb|ADY84187.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 375

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 106/350 (30%), Positives = 181/350 (51%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPIS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL  G + +F  E + G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEGLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294
              RL++G +P+   ++P  +   ++   ++L Q + R S+++   R  AV+++L+ +D+
Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   N P++GK  E +         M I FN  Y+   +    +D V+
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDMTISFNPDYMAAALRASVTDSVI 344


>gi|83814447|ref|YP_444160.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855]
 gi|83755841|gb|ABC43954.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855]
          Length = 377

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 105/363 (28%), Positives = 184/363 (50%), Gaps = 20/363 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T   +D+LE L      +  K+T+P+   +L + +   L + A+  EI I   +P  
Sbjct: 1   MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 60

Query: 61  VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +  G+     I V A  L D +R L D   I F  +++    ++   G  ++ +     
Sbjct: 61  FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S++P   E E  +   +   +L   +++T FA++ + +R  + G++F ++EE+  +  VA
Sbjct: 118 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSV--VA 175

Query: 176 TDGHRLAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TDGHRL    + ++ A  +     IVP KA     RI+   D    V + +S +      
Sbjct: 176 TDGHRLVKLTLPELRADTSA--DFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGE 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLID  +PNYQ+VIP  ND+ L VN  ++  AV RV + SS     ++L +++D 
Sbjct: 233 SRVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADT 292

Query: 295 LCMTVDNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + ++ ++ +   +A E+++  Y+  PM+I FN +YL E++ N+       DEVVF L S 
Sbjct: 293 VTISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSP 347

Query: 354 NSS 356
           N +
Sbjct: 348 NRA 350


>gi|268315580|ref|YP_003289299.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252]
 gi|262333114|gb|ACY46911.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252]
          Length = 379

 Score =  146 bits (368), Expect = 6e-33,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 177/349 (50%), Gaps = 13/349 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV  +D+L+ L     ++  K T+P+   +L +A DG L + A+  EI I   +P  
Sbjct: 1   MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60

Query: 61  VDV------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +++         + V A  L + +R L D   + F  +      +    G  ++ +  F 
Sbjct: 61  LELQNGKEGARRVAVPARRLLETLRALPD-LPVQFSADESFNVTLTTDQG--HYKMVGFD 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +++P+  E +  +S  + +++L+  +++T FA++ + +R  + GIFF +  E+ ++  V
Sbjct: 118 GADYPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRV--V 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRL    +  +     +   IVP KA   + ++ +  D +  + + E  +   +  
Sbjct: 176 ATDGHRLVRLRLRELVSETPL-EFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGP 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  RLID  +PNY+ VIP  ND+ L V+      AV RV + +S     V+L+L  D 
Sbjct: 235 VRIISRLIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDH 294

Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + +  ++ +   +A E +   Y+  PM I FN  YL E++ N+ SDEVV
Sbjct: 295 VEIAAEDIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDSDEVV 343


>gi|294505818|ref|YP_003569876.1| DNA polymerase III, beta chain [Salinibacter ruber M8]
 gi|294342146|emb|CBH22924.1| DNA polymerase III, beta chain [Salinibacter ruber M8]
          Length = 422

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 105/361 (29%), Positives = 183/361 (50%), Gaps = 20/361 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T   +D+LE L      +  K+T+P+   +L + +   L + A+  EI I   +P  
Sbjct: 46  MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 105

Query: 61  VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +  G+     I V A  L D +R L D   I F  +++    ++   G  ++ +     
Sbjct: 106 FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 162

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S++P   E E  +   +   +L   +++T FA++ + +R  + G++F ++EE+  +  VA
Sbjct: 163 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSV--VA 220

Query: 176 TDGHRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TDGHRL  +   ++ A  +     IVP KA     RI+   D    V + +S +      
Sbjct: 221 TDGHRLVKLTLPELRADTSA--DFIVPEKATKLAGRIVE-DDEICTVRVDDSHVSFEFGE 277

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLID  +PNYQ+VIP  ND+ L VN  ++  AV RV + SS     ++L +++D 
Sbjct: 278 SRVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADT 337

Query: 295 LCMTVDNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + ++ ++ +   +A E+++  Y+  PM+I FN +YL E++ N+       DEVVF L S 
Sbjct: 338 VTISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSP 392

Query: 354 N 354
           N
Sbjct: 393 N 393


>gi|167762355|ref|ZP_02434482.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC
           43183]
 gi|167699998|gb|EDS16577.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC
           43183]
          Length = 374

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 102/345 (29%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  DSDADGRFAVTAKTLLDALKEIPE--QPLTFDINTSSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    E     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGENAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E    + +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPANLMKNLLPKEQGTVTIEFDERNAVVTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E+    Y   PM I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISADEVV 340


>gi|284041473|ref|YP_003391813.1| DNA polymerase III subunit beta [Conexibacter woesei DSM 14684]
 gi|283945694|gb|ADB48438.1| DNA polymerase III, beta subunit [Conexibacter woesei DSM 14684]
          Length = 369

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 178/343 (51%), Gaps = 6/343 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+  R ++L  L    R+   +  I     V L A  G +E++A+  E+ +   +PA 
Sbjct: 1   MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGLRVPLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS+ + A L+ D+VR L         +  E   +V +  G++ F++++    +FP 
Sbjct: 61  IEREGSVVLPARLIVDVVRSLSGPTATLELRPAE--QDVELVAGNAQFHIRTLRAEDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      + +      V R   + + +E R  L GI    +E +L++  VATD +R
Sbjct: 119 FPEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRM--VATDSYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSV 239
           L+V E  +   +       VP +A+ E+ R++   D   + V + ++++   I  + +S 
Sbjct: 177 LSVKETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ ++P S + EL +  + +   V R+S+++  +   ++LS +  +L ++ 
Sbjct: 237 RLIEGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLAQ-KNAPLRLSFAPGELTVSA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             PD+G+A ES+ V +   P +I FN  +L + ++++ S +V+
Sbjct: 296 QTPDIGEARESLPVAFQGEPFEIGFNPDFLRDGLESVGSGDVM 338


>gi|47097284|ref|ZP_00234842.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47014329|gb|EAL05304.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 378

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|300866651|ref|ZP_07111338.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506]
 gi|300335360|emb|CBN56498.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506]
          Length = 387

 Score =  146 bits (368), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 111/404 (27%), Positives = 205/404 (50%), Gaps = 38/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLL A++    +  +G ++   I  +  
Sbjct: 1   MKLICTQSDLNSNLSLVSRAVPSRPTHPVLANVLLVADEKTQRVSLTGFDLSLGIRTSFA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESE 117
           A VD  GS T+ A LL DI+ +L DG +IS   +++ G  +  ++     + ++     E
Sbjct: 61  AQVDEGGSFTLPAKLLNDIISRLPDG-EISL--DDDAGEAIATVTSSSGKYTVRGMGPEE 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E E      L    L   ++ T FA + +E +  L G+   + ++ L+  A  TD
Sbjct: 118 FPELPEIEGGELINLPPEALIAGLKGTLFATSPDETKQVLTGVHLKVQQDSLEFAA--TD 175

Query: 178 GHRLAVAEVDIVAQI----AKMPS--------IIVPRKAVGEILRILSSKDSS--VKVSL 223
           GHRLAV E   V+      A +P+        I VP KA+ EI +++++  SS  V + L
Sbjct: 176 GHRLAVVETAKVSDREYDEASLPTQESSAIFEITVPAKALREIEKMVAAGQSSEPVALHL 235

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            + +I        ++ R ++G++PNY+ ++P S ++ + +   +L  AV+R+++++  + 
Sbjct: 236 DQGQIVFEWADQRLTTRTLEGQYPNYRQLLPRSFERLITLERRSLLAAVERIAVLADQKN 295

Query: 284 QAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             +K S+ ++  K+ ++VD  D+G   ESM+   +   +DI FN KYL++I+    S   
Sbjct: 296 NILKCSIDAENQKVTLSVDAKDVGSGTESMSAQISGESIDIAFNVKYLIDILKTAPS--- 352

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              E+  +L+ + + V IR             VNA +++MP+++
Sbjct: 353 --PEIQMQLNEATAPVIIR---------PLGGVNATFLVMPVQL 385


>gi|332885445|gb|EGK05694.1| DNA polymerase III, beta subunit [Dysgonomonas mossii DSM 22836]
          Length = 374

 Score =  145 bits (367), Expect = 7e-33,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 179/344 (52%), Gaps = 8/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  + +L  L    ++I  KNT+P+    LL+     L + A+  E  +  ++  +
Sbjct: 1   MRFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLSLTAADSETRLVTSLEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D +++L D         + L T +   +G  NF  Q+    ++P
Sbjct: 61  EADGNGKFAVNAKNLLDPLKELPDQPLTFEINSDNLETFIFFHNGKYNFIGQN--GEDYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             K+ +E   S  +   VL + + RT FA A +E+R  +NG++F I+ EDL    VA+DG
Sbjct: 119 QPKQLKETAVSLTIEPQVLFSGINRTLFASADDELRPVMNGVYFDISTEDLTF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+ A+  S I+P+K    +  IL  +  +V++   E+  ++ + S +M+
Sbjct: 177 HKLVRCKT-LSAKGAERASFILPKKPANLLRAILPKESETVEIKFDENNAYIKMSSYTMT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R I+G +PNY +VIP +N  ++ ++  +   A+ RVS+ S+     V+L LS   + ++
Sbjct: 236 CRFIEGRYPNYNSVIPQNNPNKVILDRLSFLNALKRVSVFSNQASNLVRLQLSDKNIIVS 295

Query: 299 VDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             + D   A  E+++  Y   PM I F   +L++I++NI S ++
Sbjct: 296 AQDIDFSTAAEETISCDYTGTPMSIGFKSSFLIDILNNIPSSDI 339


>gi|16802050|ref|NP_463535.1| DNA polymerase III subunit beta [Listeria monocytogenes EGD-e]
 gi|46906226|ref|YP_012615.1| DNA polymerase III subunit beta [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093012|ref|ZP_00230791.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|224498305|ref|ZP_03666654.1| DNA polymerase III subunit beta [Listeria monocytogenes Finland
           1988]
 gi|224503075|ref|ZP_03671382.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL R2-561]
 gi|226222641|ref|YP_002756748.1| DNA polymerase III, beta chain [Listeria monocytogenes Clip81459]
 gi|254824778|ref|ZP_05229779.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|254827426|ref|ZP_05232113.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165]
 gi|254830706|ref|ZP_05235361.1| DNA polymerase III subunit beta [Listeria monocytogenes 10403S]
 gi|254899684|ref|ZP_05259608.1| DNA polymerase III subunit beta [Listeria monocytogenes J0161]
 gi|254913113|ref|ZP_05263125.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254930867|ref|ZP_05264226.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|254937494|ref|ZP_05269191.1| DNA polymerase subunit III [Listeria monocytogenes F6900]
 gi|254991924|ref|ZP_05274114.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-064]
 gi|255026749|ref|ZP_05298735.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-003]
 gi|284803264|ref|YP_003415129.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578]
 gi|284996405|ref|YP_003418173.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923]
 gi|300763384|ref|ZP_07073382.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
           N1-017]
 gi|16409361|emb|CAC98217.1| DNA polymerase III, beta chain [Listeria monocytogenes EGD-e]
 gi|46879490|gb|AAT02792.1| DNA polymerase III, beta subunit [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47018580|gb|EAL09334.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|225875103|emb|CAS03791.1| DNA polymerase III, beta chain [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258599804|gb|EEW13129.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165]
 gi|258610096|gb|EEW22704.1| DNA polymerase subunit III [Listeria monocytogenes F6900]
 gi|284058826|gb|ADB69767.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578]
 gi|284061872|gb|ADB72811.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923]
 gi|293582412|gb|EFF94444.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293591115|gb|EFF99449.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|293594017|gb|EFG01778.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300515661|gb|EFK42710.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
           N1-017]
 gi|328468323|gb|EGF39329.1| DNA polymerase III subunit beta [Listeria monocytogenes 1816]
 gi|328476146|gb|EGF46852.1| DNA polymerase III subunit beta [Listeria monocytogenes 220]
 gi|332310335|gb|EGJ23430.1| DNA polymerase III subunit beta [Listeria monocytogenes str. Scott
           A]
          Length = 381

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|104773259|ref|YP_618239.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422340|emb|CAI96848.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 375

 Score =  145 bits (367), Expect = 8e-33,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 181/350 (51%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L+  +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL  G + +F  E + G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294
              RL++G +P+   ++P  +   ++   ++  Q + R S+++   R  AV+++L+ +D+
Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   N P++GK  E +         + I FN  Y+   +    +D V+
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344


>gi|89885797|ref|YP_515995.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
 gi|89347795|gb|ABD71997.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
          Length = 378

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 114/401 (28%), Positives = 196/401 (48%), Gaps = 43/401 (10%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEI------- 53
           K+T  ++ +  LL     I+ R +++ +  +VLL   +DG   I A G ++E+       
Sbjct: 4   KLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDG--RITAVGTDLEVEVNATQH 61

Query: 54  ----TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109
               TGA+        S TV +  L DI++ + +   ++   EN     + ++  +  F 
Sbjct: 62  VGSFTGAL--------STTVESRKLMDILQTMANDEPVTLASENP--DHLVLTGANGTFK 111

Query: 110 LQSFPESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           L   P  +FP  +    Y  +F +   VLK L+E+T FAMA  +IRYYL G+ F +    
Sbjct: 112 LSCLPADDFPRMEIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVVEGGR 171

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           L +C   +DG R+A  EV + + I     +I+PRK+V E+ R+    D  V+V LS ++ 
Sbjct: 172 LTVCT--SDGFRVATDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQA 229

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            +   +L    +L++G+FP+ + V+P  ND  + ++ + L  A+ R +++ S ++  V+ 
Sbjct: 230 RIRFGALEFVTKLVEGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRF 289

Query: 289 SLSSD----KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            L  D     L +   N        SM V Y+   +DI FN KYLL+ +  +  D++V  
Sbjct: 290 ILDHDLISGHLKVESSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLV-- 347

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + F      S   + G    +  + D   +  Y+LMPMRI
Sbjct: 348 -LAF------SHTLVPGAALMTLPSDD---HFKYILMPMRI 378


>gi|294055612|ref|YP_003549270.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293614945|gb|ADE55100.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 375

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 105/396 (26%), Positives = 194/396 (48%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + +      L     ++  ++T+P+  +VL++A DG + +  +  ++ I   I A 
Sbjct: 1   MKFKINQDHFSNGLQQVLNVVATRSTMPILSNVLIEAADGHISLTTTNLDLGIRCRIKAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G IT+    L  IVR+L    Q   F E     +  I+ G S F +      EFP 
Sbjct: 61  IETPGGITLPVRKLATIVREL---PQSEVFVEAGDNNQAKITSGGSLFKIMGISTEEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E  + FEL  S + N+++   +  +T+E RY LNG++F  N  D KL  VATDG R
Sbjct: 118 LPTFENRHVFELGQSEVVNMLKSVSYGQSTDENRYILNGVYF--NFADDKLTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232
           LA+  ++         S+I+P K V E+ R+L   D  +K++ ++ ++   I        
Sbjct: 176 LALTALETEITEDNAGSLILPAKTVAELERLLGKGDK-LKIAFNDRQVAFEISIGEDSDS 234

Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
              + L +  ++++G +PNY+ VIP   +  +++    + + V R ++++S +  +VKL 
Sbjct: 235 GLADQLYLVSKIVEGNYPNYRQVIPKETEHRVKIERELMLECVHRAALVTSDKSNSVKLK 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +S + L ++  + + G++ ESM + Y+   + + FN ++L+E +  ++ DE         
Sbjct: 295 VSKNLLEISGSSSEYGESHESMAIAYDGPEVQVAFNPQFLMEPLKALTKDE--------- 345

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  VF   KD+ S        N   V+MP+R+
Sbjct: 346 -------VFFEFKDELSPGLFKTLDNFICVIMPLRL 374


>gi|126662353|ref|ZP_01733352.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38]
 gi|126625732|gb|EAZ96421.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38]
          Length = 373

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 177/343 (51%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L++ AS  E  +T  +   
Sbjct: 2   MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELDNNQLKVSASDLETTMTSTLEID 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ + A LL DI++   +   ++F  E+   + V IS     + +   P  EFP 
Sbjct: 62  STSQGSVAIPAKLLLDILKTFPE-QPLTFTVED--NSTVEISSNSGKYAIAYAPGEEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      + + VL   V +T FA   +++R  ++G+FF  + E   L  VATD H+
Sbjct: 119 AVVLDDPSKTLVPAEVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPE--GLIFVATDAHK 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   A  D+ A  +++   I+P+K +  +  IL + D+ V +  ++S    + E+  ++ 
Sbjct: 177 LVKYARTDVKA--SQVADFIMPKKPLNILKGILGASDAEVSIEYNDSNATFSFENYVLTC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +N      +V RV+I ++     ++L ++  +L ++ 
Sbjct: 235 RLIDGKYPNYEAVIPKENPNKLLINRVQFLNSVRRVAIFANKTTHQIRLKIAGTELNISA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L E+++N+SSDE+
Sbjct: 295 EDIDYSNKADERLTCDYQGDDMQIGFNSRFLTEMLNNLSSDEI 337


>gi|254851840|ref|ZP_05241188.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503]
 gi|258605132|gb|EEW17740.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503]
          Length = 381

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/355 (28%), Positives = 185/355 (52%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIIEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   
Sbjct: 175 SAVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
           ++ L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +
Sbjct: 235 LKDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           L + ++ ++ ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 295 LENGQVEVSSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 347


>gi|187250426|ref|YP_001874908.1| DNA polymerase III subunit beta [Elusimicrobium minutum Pei191]
 gi|186970586|gb|ACC97571.1| DNA polymerase III, beta subunit [Elusimicrobium minutum Pei191]
          Length = 369

 Score =  145 bits (366), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 113/388 (29%), Positives = 200/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + +   LE L      +  + T+P+  + L++  +G +++  +  E+     I A 
Sbjct: 1   MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+T+    + DI++ L +  +I+     +   +V+I  G S F++   P+SE+P 
Sbjct: 61  ILEEGSVTIPLKEVSDILKNLPNDKEINLTVGED--NKVHIKSGKSKFWVIGTPKSEYPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      L    ++ +VE+T F+ +T+E RY LNG+ +   +   K   VATDG R
Sbjct: 119 IPEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWV--KTGNKFEVVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRIHLNIESLS 236
           LA+A VD +    K   II+P K + E+LR  S    S+D ++ +S++ +++  NI+  +
Sbjct: 177 LALA-VDTIESDTKDFKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETT 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              RLI+G FPNY+ VIP         +   +  +  R S+ ++     VK SL+++ L 
Sbjct: 236 YISRLIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLK 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T ++  M  + E M V Y   P +I FN +Y+L+++ NIS+     ++V F   ++   
Sbjct: 296 ITSNSQKMDFSDE-MKVEYTAEPFEISFNPQYVLDVLKNIST-----EKVEFSFINAAQP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V I     +  NN   K    YV+MP+R
Sbjct: 350 VLI-----EEINNTKFK----YVIMPVR 368


>gi|196230262|ref|ZP_03129125.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428]
 gi|196225859|gb|EDY20366.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428]
          Length = 280

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 85/254 (33%), Positives = 146/254 (57%), Gaps = 6/254 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V +  +L  L     ++  + T+P+  +VLLQA    L +  +  ++ ++GAI A 
Sbjct: 1   MKFSVSKEKLLAGLQTVQNVVSTRTTLPILSNVLLQAEGDQLRLTTTDLDVGVSGAITAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ T+ A  L++IVR+L   A+I    E +     +I  G S F +   PE EFP 
Sbjct: 61  VEKPGATTLPARRLFNIVREL-PAAEI--IVEVDSKNVASIRCGQSFFKILGLPEEEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             ++    +F +   VL++ +++T +A++T+E RY LNGI F   E   K+  VATDG R
Sbjct: 118 LPKQTDARTFTIGQQVLRDALKKTSYAISTDETRYVLNGILFSFKEN--KVTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ ++++    ++   IIVP KAV E+ R+L   +  V++S+ E+++   I    ++ +
Sbjct: 176 LALVDLEVEFPRSQEVDIIVPTKAVTELGRLLGD-EGDVRLSVEENQVAFQIGDTLLASK 234

Query: 241 LIDGEFPNYQNVIP 254
           LI+G +PNY+ VIP
Sbjct: 235 LIEGNYPNYRQVIP 248


>gi|86133972|ref|ZP_01052554.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152]
 gi|85820835|gb|EAQ41982.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152]
          Length = 372

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 176/344 (51%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L++ AS  E  ++  +   
Sbjct: 1   MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENQLKVSASDLETTMSSVVDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL D ++   D   ++F  E +   E++   G   + +  F   EFP 
Sbjct: 61  SDSSGSIAVSARLLLDTLKTFPD-QPLTFKTEGDNTIEISSDQG--KYDMAYFGGDEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +++L   + +T FA   +++R  ++G+FF  + + L    VATD H+
Sbjct: 118 AVSLPSPSKTVVPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   +  D+ A   +    I+P+K +  +  IL   +S V +  +++      +++ +  
Sbjct: 176 LVKYSRTDVTAD--QTAEFIMPKKPLNLLKGILGGSESDVTIEYNDANAKFTFDNIVLVC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L V+  +   +V RVSI SS     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   KA E ++  Y    M I FN ++L E+++N++S +V+
Sbjct: 294 EDLDFSNKADERLSCDYQGDDMQIGFNSRFLSEMLNNLNSSDVL 337


>gi|87198663|ref|YP_495920.1| DNA polymerase III beta subunit family protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134344|gb|ABD25086.1| DNA polymerase III beta subunit family protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 415

 Score =  145 bits (365), Expect = 1e-32,   Method: Compositional matrix adjust.
 Identities = 100/357 (28%), Positives = 176/357 (49%), Gaps = 43/357 (12%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS------VDVCGSI-----TVSAH 72
           K+TIP+   V ++A+DG+L +     +  I  ++P S       +   SI      V A 
Sbjct: 34  KDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATCVPAR 93

Query: 73  LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132
            L  IV+++   A ++     +  + V I+ G S F +   P  +FP     ++ +SF +
Sbjct: 94  ALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEHSFSI 153

Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192
           A+  L+++  R   A++TEE RYYLNG++ H  + D +    ATDGHRLA    D     
Sbjct: 154 AAGALRDVFARVEHAISTEETRYYLNGVYMHPQDLDQRF--AATDGHRLARLVQDGPDGA 211

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--------SRIHLNIES---------- 234
           A  P++I+ R+ V  + ++L   D++ KV  S         SR  + ++S          
Sbjct: 212 ASFPAVIIGRRTVAVLDKLL---DAAGKVDTSTSDDADKACSRPMVEVDSDSNGRVIYWA 268

Query: 235 --------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
                   +++  + +DG FP+Y  VIP +    L V+   L  A+ RV+ + S + +AV
Sbjct: 269 MPAPDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTRAV 328

Query: 287 KLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           KL L  ++K  ++  +P++G A+E +   Y   P+ I FN  Y    +  +++D+V+
Sbjct: 329 KLELDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSAVATDKVL 385


>gi|157273494|gb|ABV27393.1| DNA polymerase III beta subunit [Candidatus Chloracidobacterium
           thermophilum]
          Length = 391

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 112/407 (27%), Positives = 200/407 (49%), Gaps = 40/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG------LLEIKASGPEIEIT 54
           M+ +V ++D+L+ L     ++E+K TIP+  ++LL    G      LL +  +  +  + 
Sbjct: 1   MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            + PA++   G+  + A  L DIVR L D A I F  +++    +NI+   S F L S  
Sbjct: 61  TSCPATIRHSGTALLPARRLLDIVRNLPD-ADIHF--KSDGSGNMNITCERSRFRLFSPA 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN----EEDLK 170
              +PS  E   +    + + +++ ++ R  FA + EE RY LNG+   +     ++D  
Sbjct: 118 PEGYPSLPETPAL-PLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDAS 176

Query: 171 --LCAVATDGHRLAVAE-VDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSV 219
             L  VATDGHRLA+ E  + V     +P        S ++P+K + EI R L++  ++ 
Sbjct: 177 GLLRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIAR-LAADTTAT 235

Query: 220 KVSLSESRIH--LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           +++  +   H    I S   + RL+ G+FPNY+ V+P +N+  +      L  A  RV +
Sbjct: 236 EIAFGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGV 295

Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           ++     AVKL  +  ++ +   +P+ G+A+E+++V Y    + I FN  YL++ +    
Sbjct: 296 VADETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAH 355

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S      +  F      + + +R  D D  + +       YV+MPMR
Sbjct: 356 S-----TQTRFEFKDEITQIQMRPVDGDGYDYR-------YVVMPMR 390


>gi|325685105|gb|EGD27236.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 375

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 105/350 (30%), Positives = 181/350 (51%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL  G + +F  E + G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEIAGT-SFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294
              RL++G +P+   ++P  +   ++   ++L Q + R S+++   R  AV+++L+ +D+
Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   N P++GK  E +         + I FN  Y+   +    +D V+
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344


>gi|163788818|ref|ZP_02183263.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1]
 gi|159876055|gb|EDP70114.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1]
          Length = 372

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 172/342 (50%), Gaps = 7/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L + +   L I AS  E  ++  I   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELSQSKLTISASDLETTMSSTIDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI + A LL D ++   +   ++F  E     E++ +HG   + L     +EFP+
Sbjct: 61  SDSEGSIALPARLLLDTLKTFPE-QPLTFVVEENNTVEISSNHG--KYALAYADGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      +   +L   + +T FA   +++R  ++G+FF  ++++L    VATD H+
Sbjct: 118 AVSIEDASKTTITGDILATAISKTIFAAGNDDLRPVMSGVFFQFSQDNLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     D V+   +    I+P+K +  +  IL+  D  V V  +ES      E+  +  R
Sbjct: 176 LVKYTRDDVSA-TETAEFIMPKKPLNLLKGILAGSDDGVLVEYNESNAKFTFENSVLICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++ T    +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLVIDRTQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + D   KA E +   Y    M I FN ++L E+I+N++SD V
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMINNLNSDNV 336


>gi|289548994|ref|YP_003473982.1| DNA polymerase III subunit beta [Thermocrinis albus DSM 14484]
 gi|289182611|gb|ADC89855.1| DNA polymerase III, beta subunit [Thermocrinis albus DSM 14484]
          Length = 362

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 197/385 (51%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V+R ++ E+L  A    E+K+ +PV  +  ++A DG L + A+  E  +   +PA 
Sbjct: 1   MRLYVDREELAEVLKKAQAATEKKSALPVLNNFKIKAEDGHLAVYATDLENFLFLHLPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ V+A    +++R L         +E++L     +S G S F L      EFP 
Sbjct: 61  VEEEGTLAVNAKKFTEVIRSLTSAEVYLHLREDKL----VVSGGRSTFKLAVADPEEFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +   AS++LK  +++T +A++ E+ RY L G++ H  E+  K+  V +DGHR
Sbjct: 117 FPEISGSAAQINASTLLKA-IDKTEYAISKEDSRYALQGLYLHRVED--KIHFVGSDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+      A +    S+I+PRK++  +   L      V +   E+  H+  E+ ++SVR
Sbjct: 174 LALFWTYSDADV----SVILPRKSLKVLEGFLKETVGGVSIFKDENFAHVKGENWTLSVR 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GE+P+Y +VIP     ++ V+  +L  ++ R+S ++      VK+S   +   + + 
Sbjct: 230 LLEGEYPDYLSVIPQDFQTQVVVDRDSLIASIKRLSAIAESSAFPVKISFMENLAVLEIT 289

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            P+ G+  + + V     P++I FN KYLLE +D+     V+   V       +S V + 
Sbjct: 290 EPEFGEGRDEVEVELEGEPVEIGFNGKYLLEALDSFDVRRVILKAV-----DPDSPVLME 344

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +D +       K     ++MPMR+
Sbjct: 345 SEDPE-------KDPYLCLVMPMRL 362


>gi|224535481|ref|ZP_03676020.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522895|gb|EEF92000.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 374

 Score =  144 bits (364), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 173/345 (50%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L I  S  E  +  ++  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELKDGTLSITVSDSETTMVTSVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  + D ++++ +  Q   F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDADGRFAVAAKTILDALKEIPE--QPLSFEVNTNSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ +SVL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDASVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    I  +L  +   V +   E      +E   M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRMQLVGALRRVSIFSSQASSLIKLRMQPNQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y+  PM I F   +L++I++NI++DEV+
Sbjct: 296 AQDIDFSTSAEETLACQYDGNPMSIGFKSTFLIDILNNIAADEVI 340


>gi|329955850|ref|ZP_08296653.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056]
 gi|328525230|gb|EGF52280.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056]
          Length = 374

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTDGRFAVTAKTLLDALKEIPE--QPLTFDINTNSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +   V +   E    + +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENRIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E+    Y   PM I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQTCQYTGNPMSIGFKSTFLIDILNNISADEVV 340


>gi|116619147|ref|YP_821303.1| DNA polymerase III subunit beta [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222309|gb|ABJ81018.1| DNA polymerase III, beta subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 372

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV +SD++  L  +  ++E+K TIP+  +VLL+A D  + + A+  E+ I  + PA 
Sbjct: 1   MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS TV A  L D +R L +G     F +N   +   I+ G S   +       FP 
Sbjct: 61  VKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNHWAS---ITSGRSRTRIAGMSRESFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     + ++    L +++ RT FA++ EE R+ LNG    +  E L +  VATDGHR
Sbjct: 118 LPQMPEPIA-QVPVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTM--VATDGHR 174

Query: 181 LAVAEVDIV-AQIAKMP-SIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLS 236
           LA  + +   +  A  P   +VP+KA+ E+ ++   + + +   V+  ++ +   I    
Sbjct: 175 LAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRL 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  R + G FP+Y+ V+P  +    ++    +R A++RV+  +  R +A+++  +S ++ 
Sbjct: 235 LITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQFADERSRAIRVQFNSGEVR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + + G++ ES+   Y    ++I FN +YLL+ +  IS      D V F L    S+
Sbjct: 295 VFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAISQ-----DHVAFELKDQKSA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
             +R          D   + + YV+MPMRI
Sbjct: 350 GELR-------PAGDAIADQYRYVVMPMRI 372


>gi|298209075|ref|YP_003717254.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559]
 gi|83849002|gb|EAP86871.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559]
          Length = 362

 Score =  144 bits (363), Expect = 2e-32,   Method: Compositional matrix adjust.
 Identities = 100/334 (29%), Positives = 174/334 (52%), Gaps = 14/334 (4%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L++LG    +I   NT+P+  + L + ++  L+I AS  E  +   I    D  GSI V 
Sbjct: 4   LQVLGG---VINTSNTLPILDNFLFELDNNSLKISASDLETTMVSTIDVESDSQGSIAVP 60

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPSTKEEEYVYS 129
           A LL D ++   +   ++F KE+    E++ +HG    Y  ++ + E FP+    E    
Sbjct: 61  ARLLLDTLKTFPE-QPLTFVKEDNNTIEISSNHGK---YAVAYADGEEFPNAVALEDPSQ 116

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA-VAEVDI 188
             L   VL   + +T FA   +++R  ++G+FF   ++ L    VATD H+L   +  D+
Sbjct: 117 TVLNGDVLATAISKTIFASGNDDLRPVMSGVFFQFAKDGLTF--VATDAHKLVKYSRTDV 174

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
            A        I+P+K +  +  IL+  DS V V  +ES      +++ +  RLIDG++PN
Sbjct: 175 SA--TNEAEFIMPKKPLTLLKGILAGSDSDVTVEYNESNARFTFDNVELICRLIDGKYPN 232

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KA 307
           Y+ VIP  N  +L ++ +    +V RVSI S+     V+L ++  +L ++ ++ D   KA
Sbjct: 233 YEAVIPKENPNKLTIDRSQFLNSVKRVSIFSNKTTHQVRLKIAGSELNISAEDIDYSNKA 292

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            E +   Y    M I FN ++L E+++N++++EV
Sbjct: 293 EERLTCAYQGDDMQIGFNSRFLSEMLNNLNANEV 326


>gi|330752164|emb|CBL87124.1| DNA polymerase III, beta chain [uncultured Flavobacteria bacterium]
          Length = 373

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/346 (29%), Positives = 170/346 (49%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L  L     +I+  NT+P+  H L+    G L I AS  E  +T A+  +
Sbjct: 1   MKFIVSSSKLLRSLQTVSGVIQSNNTLPILDHFLVHLTPGKLTITASDIETTMTTAL--A 58

Query: 61  VDVCGSIT--VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           VD    IT  + A +L D V+   +  Q   F  N     + +S     + L     SE+
Sbjct: 59  VDSSEEITAAIPAKILLDTVKSFPE--QPLTFTLNSSTHSLEVSSDFGKYALAYVDPSEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P +       S  ++   L   + +T FA   +++R  ++G+FF    E L    VATD 
Sbjct: 117 PKSASLNEADSINISEKTLGTAINKTLFAAGNDDLRPVMSGVFFQFTNEGLTF--VATDA 174

Query: 179 HRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           H+L   +  DI+A       +I+P+K +  +   L S  ++V +S ++         +++
Sbjct: 175 HKLVRYSRKDILA--PSTAELILPKKPLTLLKTTLGSGGNNVSISYTDQNAQFTYGEVTL 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLIDG++PN+Q VIP  N   L  +   L  +V R+SI S+     VKL ++ ++L +
Sbjct: 233 LCRLIDGKYPNFQAVIPKDNPNHLVADRMALLSSVKRISIFSNKTTHQVKLKVAGNELNI 292

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + ++ D   KA E +   Y    M+I FN ++L+E++ N+ SDE++
Sbjct: 293 SAEDLDFSNKANERLTCNYQGTDMEIGFNSRFLIEMLSNLESDEII 338


>gi|225851072|ref|YP_002731306.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1]
 gi|225645102|gb|ACO03288.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1]
          Length = 364

 Score =  144 bits (363), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 198/386 (51%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ ++++D+  LL  A    E+K+ +P+  + LL+A D  L ++ +  E+ ++ ++ A 
Sbjct: 1   MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSVFAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+  V+A  L DI R L         +++ L     I  G + + L   P  +FP 
Sbjct: 61  IENEGTACVNAKKLTDISRLLPSNEVYIKLEDSTL----KIKSGKTKYNLPVAPSEDFPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +F ++   L+  + +T +A + EE RY L G+ F     ++ +  VATDGHR
Sbjct: 117 MYPFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGNIDV--VATDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  ++   +     +IIVP+KA+ E+ ++L+  +  V+V+ ++       +   +  R
Sbjct: 175 LALYTIERTGK--GDINIIVPQKALNELKKLLTGLED-VEVAATDQYAFFRTKEWILMTR 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FP+Y  VIP    +E++++     +++ RVS +     + +KL+L  + L +   
Sbjct: 232 LLEGVFPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSV 291

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSSVFI 359
           + + G+A++ ++V Y      I FN KYL+E +      EV+D DEVV +  + N+   I
Sbjct: 292 SVEYGEAVDELSVDYEGEEYSIGFNAKYLIEAV------EVIDGDEVVIKFTNPNAQTLI 345

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D++ +           ++MPM I
Sbjct: 346 IPADQEDRYKA--------IVMPMEI 363


>gi|160882257|ref|ZP_02063260.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483]
 gi|237718359|ref|ZP_04548840.1| DNA polymerase III [Bacteroides sp. 2_2_4]
 gi|293372862|ref|ZP_06619236.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f]
 gi|299146574|ref|ZP_07039642.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23]
 gi|156112346|gb|EDO14091.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483]
 gi|229452292|gb|EEO58083.1| DNA polymerase III [Bacteroides sp. 2_2_4]
 gi|292632151|gb|EFF50755.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f]
 gi|298517065|gb|EFI40946.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +  Q   F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPE--QPLTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ +SVL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340


>gi|300812000|ref|ZP_07092456.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497026|gb|EFK32092.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 375

 Score =  144 bits (362), Expect = 3e-32,   Method: Compositional matrix adjust.
 Identities = 104/350 (29%), Positives = 180/350 (51%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL  G + +F  E + G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLP-GREFTF--EVKEGNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L    L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEIAGT-SFSLPPKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS-SDK 294
              RL++G +P+   ++P  +   ++   ++L Q + R S+++   R  AV+++L+ +D+
Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 295 LCMTVDN-PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   N P++GK  E +         + I FN  Y+   +    +D V+
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRASVTDSVI 344


>gi|32490764|ref|NP_871018.1| hypothetical protein WGLp015 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165970|dbj|BAC24161.1| dnaN [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 369

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 103/345 (29%), Positives = 182/345 (52%), Gaps = 10/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK ++ R  IL  L     + +   +IP+  ++L+    +  + I  +  E EIT  I  
Sbjct: 1   MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60

Query: 60  SVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             DV  G+ TVS   + DIV+     + I+FF +NE   ++ I    S F L + P   F
Sbjct: 61  ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNE---KLFILCKKSKFVLCTLPYKNF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E      ++ + LK L+E T+F++A ++IR YLNG+   I + +++  +V+T+G
Sbjct: 118 PNLNNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIR--SVSTNG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+ +++ I   I+     I+PR  V  +LRIL+ +   V++ + E  I +NIE   ++
Sbjct: 176 HRLSKSKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILT 235

Query: 239 VRLIDGEFPNYQNVIPCS--NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +L++GEFP Y+ +   +  N   L V+C  L+  + RVS++S  + + + L+L  + L 
Sbjct: 236 TKLLEGEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVISD-KSKCINLNLKKNLLI 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + + N +   A E +   Y    M+I  N  Y+L+ ++ I S  V
Sbjct: 295 INIKNFNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESKRV 339


>gi|323141436|ref|ZP_08076326.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT
           12067]
 gi|322414092|gb|EFY04921.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT
           12067]
          Length = 369

 Score =  143 bits (361), Expect = 4e-32,   Method: Compositional matrix adjust.
 Identities = 106/369 (28%), Positives = 193/369 (52%), Gaps = 22/369 (5%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIV 78
           R I  K + P+   + + A D  LEI+A    + I+  I A +   G I VSA    D++
Sbjct: 19  RAIISKPSTPIFSGIHVIAADNKLEIQAMDLNMAISCTIDAEISESGEIVVSAKHFADLI 78

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
           RKL   A+     +NE    + +S G S + L    E ++P     +   +  L   ++K
Sbjct: 79  RKLP--AESLTISKNEEKHSIKVSSGKSEYQLFLMNEDDYPKFPTFDADRTIALDDGMIK 136

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
            L+++T F+ +T+E R    GI   +  +D K+  V T+ HRLA+  +       +  S+
Sbjct: 137 ELIKKTIFSCSTDEARPLFTGIL--VEAKDGKITFVGTNTHRLAIKSLPYEGN--EELSM 192

Query: 199 IVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           I+P K +GEI R L+ +    V +SL  ++I + I+++ +  RLI+G+FP+Y+ VIP   
Sbjct: 193 IIPSKVLGEISRNLTGEVPQQVLISLLNNQIMVVIDNIVIVSRLIEGQFPDYRRVIPPKF 252

Query: 258 DKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
               +VN   L  AV+RV++ S+      +K+S+++D++ +T  +PD+G  +E ++    
Sbjct: 253 ALTSKVNIKELAGAVERVALFSTDGDYSIIKMSVAADEITITSSSPDVGTGLEVVSCQTI 312

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             P+++ FN KY+L+I+ N+ +     +E V  +++S S V +   D+            
Sbjct: 313 GDPLNVAFNAKYILDILKNLEA-----EEAVLSMNTSLSPVCVTCADEPDYT-------- 359

Query: 377 FYVLMPMRI 385
            Y++ P+R+
Sbjct: 360 -YIVTPVRV 367


>gi|237715176|ref|ZP_04545657.1| DNA polymerase subunit III [Bacteroides sp. D1]
 gi|262408871|ref|ZP_06085416.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22]
 gi|294647647|ref|ZP_06725214.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a]
 gi|294810714|ref|ZP_06769362.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC
           1b]
 gi|298481745|ref|ZP_06999935.1| DNA polymerase III, beta subunit [Bacteroides sp. D22]
 gi|229445009|gb|EEO50800.1| DNA polymerase subunit III [Bacteroides sp. D1]
 gi|262353082|gb|EEZ02177.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22]
 gi|292637013|gb|EFF55464.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a]
 gi|294442047|gb|EFG10866.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC
           1b]
 gi|295087705|emb|CBK69228.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens XB1A]
 gi|298271967|gb|EFI13538.1| DNA polymerase III, beta subunit [Bacteroides sp. D22]
          Length = 374

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPE--QPLTFDINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ +SVL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGAVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340


>gi|328946932|ref|YP_004364269.1| DNA polymerase III subunit beta [Treponema succinifaciens DSM 2489]
 gi|328447256|gb|AEB12972.1| DNA polymerase III, beta subunit [Treponema succinifaciens DSM
           2489]
          Length = 374

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 192/390 (49%), Gaps = 24/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T ++  +++ +  A  II  KN   +  ++L+ A +  L IKA+  ++     +P  
Sbjct: 1   MRFTFDKDTMIKEISIAQEIISTKNMGSILSNILIIAQENKLTIKATDIKVNFETQVPVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS------HGDSNFYLQSFP 114
           +   G+ TV       I+  L  G +I F +E +   E +I+           F ++S  
Sbjct: 61  ITEEGTTTVYCDKFMGILNSLPSG-EIEFNQEKKENEEQSINVIIKPVDKKIKFQMKSMS 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + +FP     E V  FE++S  +K ++ +T FA++ +E RY++NG+FF    ++L +  V
Sbjct: 120 QEKFPEFYSAENVPYFEVSSKDIKEMIAQTSFAVSEDETRYFMNGVFFEKKGDNLNM--V 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG RL+     I+A I++ PS IV  K +  IL+  + ++ ++ V++ +  I     +
Sbjct: 178 ATDGRRLSFVSKSILAGISEFPSAIVHPKILNIILK-HAPEEGNIFVAVVDKMIFFKFGN 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
                 L++G+FPNY+ VIP       +V   +L  A+ RV++M   +   +  ++S   
Sbjct: 237 YKFGAALLEGQFPNYERVIPEHQAFNFQVYKADLVDALKRVALMVDKKAGRIFFNISDGV 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T    DMG A E +   Y      I  N++Y+ E +  I+S     +++ F      
Sbjct: 297 LKITSSQSDMGSADEEIPCQYQGDSYTIALNFRYIEEPLRGINS-----EKIAFEFTEEM 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +V +R +  +         + F+++MPM+
Sbjct: 352 KAVTMRPEPAE---------DYFHIIMPMQ 372


>gi|260173819|ref|ZP_05760231.1| DNA polymerase III, beta chain [Bacteroides sp. D2]
 gi|315922082|ref|ZP_07918322.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695957|gb|EFS32792.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 374

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +  Q   F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPE--QPLTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ +SVL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS+DEV+
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVI 340


>gi|29346774|ref|NP_810277.1| DNA polymerase III subnit beta [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572230|ref|ZP_04849633.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6]
 gi|298386579|ref|ZP_06996135.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14]
 gi|29338671|gb|AAO76471.1| DNA polymerase III, beta chain [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838005|gb|EES66093.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6]
 gi|298260956|gb|EFI03824.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  143 bits (360), Expect = 5e-32,   Method: Compositional matrix adjust.
 Identities = 101/345 (29%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPE--QPLTFYVNTDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    E     E+ + VL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAVLGENAVRVEMEAGVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y+   M I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQVCQYSGAAMSIGFKSTFLIDILNNISADEVV 340


>gi|182416732|ref|ZP_02948131.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521]
 gi|237669656|ref|ZP_04529634.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182379389|gb|EDT76884.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521]
 gi|237654890|gb|EEP52452.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 368

 Score =  142 bits (359), Expect = 6e-32,   Method: Compositional matrix adjust.
 Identities = 107/388 (27%), Positives = 199/388 (51%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           M  T E+ +ILE +    + I  K+T+P+   V ++ N  D  L +  S  ++ I   + 
Sbjct: 1   MIFTCEKQEILEGISIVQKAITGKSTMPILEGVYIKTNELDSSLTLIGSDMDVSIQTTVN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A++   GSI + A +  +I+RKL +        EN++   + I+   S F +     +EF
Sbjct: 61  ANIIEPGSIVIDAKIFGEIIRKLPNSTIKIETIENQV---IRITCEKSVFDVVYMNTNEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E        +  ++LKN+++ T FA+A +E R  L GI F +  ++L L  VA DG
Sbjct: 118 PELPEINEDLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA+    + + I     +++P K + E+ +IL   +  V ++ + + I  N+E   + 
Sbjct: 176 YRLAIKSEFLDSDIE--IEVVIPGKTLNEVSKILEDVEDIVDITFTNNHILFNLEKTKII 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
            RL++G+F NY +++P  +   + VN   L+ +++R S+M+       +KL +  D L +
Sbjct: 234 SRLLEGKFINYNSLLPQEHKLSVHVNRQELQNSIERASLMAKDGNTNLIKLDIQQDNLII 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N  +GK  E +++      + I FN +YLL+++ N+      +DEVV ++ S  S  
Sbjct: 294 S-SNSQLGKVREEISMKLQGDEIQIAFNSRYLLDVLKNME-----EDEVVLKMTSGISPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I          ++N  NA Y+++P+R+
Sbjct: 348 VIE---------ENNNENAKYLVLPVRL 366


>gi|168187276|ref|ZP_02621911.1| DNA polymerase III, beta subunit [Clostridium botulinum C str.
           Eklund]
 gi|169294798|gb|EDS76931.1| DNA polymerase III, beta subunit [Clostridium botulinum C str.
           Eklund]
          Length = 367

 Score =  142 bits (359), Expect = 7e-32,   Method: Compositional matrix adjust.
 Identities = 108/386 (27%), Positives = 188/386 (48%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + L A +  + +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNEITLIGSDIDLSIETKIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+I V + +  +I+RKL + +      EN     + I    S F L      EFPS
Sbjct: 61  VEEEGTIVVDSKIFGEIIRKLPNSSVRINTTEN---NSIEIFCEKSKFDLIHMDADEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +   VLKN+++ T FA+A +E R  L GI F + +E L L  VA DG+R
Sbjct: 118 LPKINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDEKLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +     S ++P K   E+ +ILS  + SV ++ + + I  N+    +  R
Sbjct: 176 LALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKSVNITFTPNHILFNLGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP     ++    + L   ++R S+M        VK  +  D L +T 
Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLVIT- 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E +N+      + I FN KYL++++  +      D+E++   DSS S   I
Sbjct: 293 SNSQLGKVREELNIILQGGELQIAFNSKYLIDVLKILE-----DEEIIMEFDSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + KD+ +           Y+++P+R+
Sbjct: 348 KSKDEKTYT---------YLVLPVRL 364


>gi|114565578|ref|YP_752732.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336513|gb|ABI67361.1| DNA polymerase III, beta subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 409

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 193/394 (48%), Gaps = 27/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  +E+ D+L +     R    KN IPV   +LL+++ D  L + A+  EI I  +  A
Sbjct: 30  MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRAST-A 88

Query: 60  SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPES 116
            ++V   GS+ V+AH  +D ++ L    ++  F E N+   +++I +G S+ ++ ++ + 
Sbjct: 89  KIEVIEKGSVLVNAHYFFDFIKLL---PEVPIFIELNQETAQLDIKYGRSSGFINTYRDY 145

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P+   ++    F +   VLK  +++T FA AT   R    G+ F + E    L  VA+
Sbjct: 146 EYPALPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDLGEGG-NLNVVAS 204

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRLA     I     +  S I+P +   EILR+L      + + LS + +     +  
Sbjct: 205 DTHRLARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFL 264

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSD 293
           +  RLI+G++PNY+ VIP S   +++++   L   ++R  ++ S   ++IQ  +     +
Sbjct: 265 LLSRLIEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEEN 324

Query: 294 KLCMTVDNPDMGKAIESMNV---YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ +   +  MG+  E + +      E  ++I FN  Y L+++  +  +     E++  L
Sbjct: 325 EVEVNSYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGEA---KELLINL 381

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S    V I    KD         N  YVL+P+R
Sbjct: 382 SSILGPVMIVNPQKD---------NYLYVLVPLR 406


>gi|323143413|ref|ZP_08078098.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066]
 gi|322416818|gb|EFY07467.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066]
          Length = 376

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 89/315 (28%), Positives = 173/315 (54%), Gaps = 5/315 (1%)

Query: 29  VSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC--GSITVSAHLLYDIVRKLQDGAQ 86
           ++ +VL+   +  L  K +   IE++  IP   DV   G+ TV+A  L D  + L   A 
Sbjct: 30  ITQNVLISIKNNELTFKCTVYSIEMSVVIPGVADVESEGATTVNAAKLRDSCKNLDQSAL 89

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF 146
           ++F   +E    + +S G + F +++    EFP+ + E+      L  + LK +++++ F
Sbjct: 90  VTF-DYDESNEVLLVSSGTAQFQIRTRNVLEFPTFEHEDVEQRIVLKQNQLKAIIDKSIF 148

Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206
            ++ E+ R YL G+ F ++ E++ +    +DGHR+AV E  +   +A+     + R+   
Sbjct: 149 CISNEDFREYLKGMRFEVDGENVSV--FTSDGHRMAVIETTLDVPLAQPLGSNLTRRCAA 206

Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
           E+ +IL   D  V+++ +++ I  +    +++ +L+   +PN + VIP S D  + V   
Sbjct: 207 ELTKILKDSDEPVELAFTKNSISTSCNGYTLTSKLLICGYPNVRAVIPKSIDVSVEVPRA 266

Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY 326
            L+ A+ RV+++SS R+ AV L  + D+L +  +N +   A ES+N+ YN  P+D+  N 
Sbjct: 267 ELKNAISRVNVLSSKRVNAVNLVFADDRLNLKTENSEHEVATESLNISYNLHPIDMSLNA 326

Query: 327 KYLLEIIDNISSDEV 341
            Y++E+++ IS++ V
Sbjct: 327 GYVMEVLNAISTENV 341


>gi|320531086|ref|ZP_08032115.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399]
 gi|320136668|gb|EFW28621.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399]
          Length = 380

 Score =  142 bits (358), Expect = 8e-32,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 18/349 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +SD+L  L    + +  K   P+   + L A DG LE++++  EI     IPA 
Sbjct: 1   MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+  +    L +  RKL  D   I    E+ LG    I+ G++ F L+     +FP
Sbjct: 61  VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLGV---ITSGNARFTLRQMEVDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIR---YYLNGIFFHINEEDLKLCAVAT 176
             +  +    F +   VL +LV+++ FA   EE R       G    +   ++ L A  T
Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITLAA--T 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235
           + HRLAV    I +   ++  +++P K + E+ R ++S+  + +++  S ++I ++ E +
Sbjct: 176 NVHRLAVKSEHIESDAGQI-RVVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELR----VNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
            M+ RLI+G FP+Y  VIP   D+ +R    +N  +   AV+R S++S   +   VKL  
Sbjct: 235 YMTSRLIEGSFPDYHRVIP--RDENIRTKVTMNAADFAAAVERASLISRTDQYNIVKLEF 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
             + L +T ++PD+G+A E++       P  I FN  YLL+ + ++ SD
Sbjct: 293 EDNLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSD 341


>gi|53714271|ref|YP_100263.1| DNA polymerase III subunit beta [Bacteroides fragilis YCH46]
 gi|60682327|ref|YP_212471.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC
           9343]
 gi|253564787|ref|ZP_04842243.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5]
 gi|265766237|ref|ZP_06094278.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16]
 gi|52217136|dbj|BAD49729.1| DNA polymerase III beta chain [Bacteroides fragilis YCH46]
 gi|60493761|emb|CAH08551.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC
           9343]
 gi|251946252|gb|EES86629.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5]
 gi|263253905|gb|EEZ25370.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16]
 gi|301163801|emb|CBW23356.1| putative DNA polymerase III beta chain [Bacteroides fragilis 638R]
          Length = 374

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 169/345 (48%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L Q  DG L +  S  E  +  ++  +
Sbjct: 1   MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +  Q   F       E+ + + +  + L      EFP
Sbjct: 61  ESDSNGKFAVAAKTLLDALKEIPE--QPLTFDIKPDTYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + +L   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340


>gi|255690065|ref|ZP_05413740.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565]
 gi|260624342|gb|EEX47213.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 168/345 (48%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPE--QPLTFDVNPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + VL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGMVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +L V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKLTVDRQQLMGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS+DEV+
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVI 340


>gi|218130098|ref|ZP_03458902.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697]
 gi|317476591|ref|ZP_07935836.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|217987602|gb|EEC53930.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697]
 gi|316907187|gb|EFV28896.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 374

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTDGRFAVTAKTLLDALKEIPE--QPLTFDINTDSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +   V +   E    + +E+  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLENYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E+    Y   PM I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISADEVV 340


>gi|313894749|ref|ZP_07828310.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976658|gb|EFR42112.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 380

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/349 (29%), Positives = 177/349 (50%), Gaps = 18/349 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +SD+L  L    + +  K   P+   + L A DG LE++++  EI     IPA 
Sbjct: 1   MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+  +    L +  RKL  D   I    E+ LG    I+ G++ F L+     +FP
Sbjct: 61  VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLGV---ITSGNARFTLRQMEVDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIR---YYLNGIFFHINEEDLKLCAVAT 176
             +  +    F +   VL +LV+++ FA   EE R       G    +   ++ L A  T
Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITLAA--T 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235
           + HRLAV    I +   ++  +++P K + E+ R ++S+  + +++  S ++I ++ E +
Sbjct: 176 NVHRLAVKSEHIESDAGQI-RVVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELR----VNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
            M+ RLI+G FP+Y  VIP   D+ +R    +N  +   AV+R S++S   +   VKL  
Sbjct: 235 YMTSRLIEGSFPDYHRVIP--RDENIRTKVTMNAGDFAAAVERASLISRTDQYNIVKLEF 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
             + L +T ++PD+G+A E++       P  I FN  YLL+ + ++ SD
Sbjct: 293 EDNLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSD 341


>gi|120436260|ref|YP_861946.1| DNA polymerase III subunit beta [Gramella forsetii KT0803]
 gi|117578410|emb|CAL66879.1| DNA polymerase III subunit beta [Gramella forsetii KT0803]
          Length = 372

 Score =  142 bits (357), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 100/344 (29%), Positives = 175/344 (50%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L   N+  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSNYLLKQLQILGGVINNSNTLPILDNFLFDLNNDELTVSASDLETTMSAKLKVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V A LL D ++   +   ++F  E+    E++ +HG   + L      EFP+
Sbjct: 61  SDSEGKIAVPAKLLLDTLKTFPE-QPLTFVVEDNNTIELSSNHG--KYALAYADGEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  + + +L + + +T FA   +++R  ++G+FF   E+ L    VATD H+
Sbjct: 118 PVELEDPSSTVVEADILASAISKTIFASGNDDLRPVMSGVFFQFTEDGLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   +  DI A  A     I+P+K +  +  IL+  +S V +  ++S      +   +  
Sbjct: 176 LVKYSREDIKANQAA--EFIMPKKPLNLLKGILAGSESEVLIEYNDSNAKFTFDETQLIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +       +V RVSI S+     V+L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   KA E +   Y    M I FN ++L+E+++N+++DEV+
Sbjct: 294 EDVDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLNNLTADEVM 337


>gi|257456818|ref|ZP_05622002.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580]
 gi|257445824|gb|EEV20883.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580]
          Length = 367

 Score =  141 bits (356), Expect = 1e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 187/385 (48%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  +  +L+ +  A  II  K  I +  +VLL A +G L I+A+  ++     IP  
Sbjct: 1   MKFTFTKEVLLKEMAIAQEIISNKTAISILSNVLLIAKEGSLTIRATDIKVAFETKIPVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV       I+  +  G   +  K+ +L    +IS   + F L++  +++FP 
Sbjct: 61  VAEEGATTVFCDKFTSIIASMPSGEIEAEQKDQKLIIR-SISK-KAKFSLKTISDNDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +   V  FE+ +   K ++ +T FA++ +E RY++NG++    E +L   A  TDG R
Sbjct: 119 FTDSSNVQFFEVPAKDFKEMITQTIFAVSDDETRYFMNGVYMEKKENNLIFAA--TDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + D    +      I+P K +  I++  SS++  + + +SE  I     + + S  
Sbjct: 177 LAFIQHDFGIALPDFKGSIIPPKILS-IVQRRSSEEGMISIGISEKNIFFRFNAYNFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ VIP S        C +  QA+ RV+++   + + + L +S   L +T +
Sbjct: 236 LIDGQFPNYERVIPESQAHHFEAQCDDFLQALKRVALLVEQKSKRIFLKISDGTLSITSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G A E +   Y    + I  NY YL E +  + S+ +       R++ ++    I 
Sbjct: 296 ENELGTANEEIPCKYEGEEITIALNYMYLEEPLKVLGSENI-------RIEFTDPMRAIT 348

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +        +   + F+++MPM++
Sbjct: 349 LR-------PETDTHFFHIIMPMQM 366


>gi|329961133|ref|ZP_08299388.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057]
 gi|328532071|gb|EGF58881.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057]
          Length = 374

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/345 (28%), Positives = 172/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   V+A  L D ++++ +  Q   F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDMDGRFAVAAKTLLDALKEIPE--QPLTFEINTSSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + +L   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQILLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLMKNLLPKEQGNVTIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQLLTGALRRVSIFSSQASSLIKLRMQENLIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+DEV+
Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISADEVI 340


>gi|15834966|ref|NP_296725.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg]
 gi|270285140|ref|ZP_06194534.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg]
 gi|270289162|ref|ZP_06195464.1| DNA polymerase III subunit beta [Chlamydia muridarum Weiss]
 gi|301336535|ref|ZP_07224737.1| DNA polymerase III subunit beta [Chlamydia muridarum MopnTet14]
 gi|14194691|sp|Q9PKW4|DPO3B_CHLMU RecName: Full=DNA polymerase III subunit beta
 gi|7190388|gb|AAF39208.1| DNA polymerase III, beta subunit [Chlamydia muridarum Nigg]
          Length = 366

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 103/385 (26%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 1   MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L +          E+ T   I+ G S F L S  + +FP 
Sbjct: 61  VYESGSVTIPSRRFFQLIRELTEANIEVAANSGEMAT---ITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I+  +  +  V TDG R
Sbjct: 118 LPDMQNALRFTLDSEQLKDMFQRTSFAVSREESRYVLTGVLLSIS--NGTMTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R ++S+D    + L +++I +   +  +  +
Sbjct: 176 LAKIDTNISLDPSFSGDYIIPIKAVEEIIR-MASEDVQSTIFLDQTKIAVECGNTLLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTQSSVQLNLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|295133681|ref|YP_003584357.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87]
 gi|294981696|gb|ADF52161.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87]
          Length = 372

 Score =  141 bits (356), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 99/343 (28%), Positives = 173/343 (50%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L   N+  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSSYLLKQLQILGGVINNNNTLPILDNFLFDLNNDELTVSASDLETTMSAKLNVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V A LL D ++   +   ++F  E+    E++ +HG   + L      EFP+
Sbjct: 61  SDSEGKIAVPAKLLLDTLKTFPE-QPLTFVAEDNHTIELSSNHG--KYALAYADGEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  +   +L + + +T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 PVSLEDPSNTVIEGDILSSAISKTIFASGNDDLRPVMSGVFFQFSTEGLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   +  D+ A  ++    I+P+K +  +  IL+  +S V +  +ES      +  ++  
Sbjct: 176 LVKYSREDVTA--SQTAEFIMPKKPLNLLKGILAGSESEVLIEYNESNAKFTFDDTTLIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +       +V RVSI S+     V+L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L E+++N++SDEV
Sbjct: 294 EDVDYSNKAEERLTCGYQGDDMQIGFNSRFLTEMLNNLNSDEV 336


>gi|213028016|ref|ZP_03342463.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 201

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 72/207 (34%), Positives = 121/207 (58%), Gaps = 6/207 (2%)

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
           R L +GA+I+   E   G  + +  G S F L + P ++FP+  + +    F L  + +K
Sbjct: 1   RGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMK 57

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
            L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV  + + A +    S+
Sbjct: 58  RLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLPSH-SV 114

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           IVPRK V E++R+L   ++ ++V +  + I  ++     + +L+DG FP+Y+ V+P + D
Sbjct: 115 IVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 174

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQA 285
           K L   C  L+QA  R +I+S+ + + 
Sbjct: 175 KHLEAGCDILKQAFARAAILSNEKFRG 201


>gi|319954740|ref|YP_004166007.1| DNA polymerase iii, beta subunit [Cellulophaga algicola DSM 14237]
 gi|319423400|gb|ADV50509.1| DNA polymerase III, beta subunit [Cellulophaga algicola DSM 14237]
          Length = 372

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 101/343 (29%), Positives = 172/343 (50%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L       L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNQLIVSASDLETTMSSVLNVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V A LL DI++   +   ++F  E+    E++ +HG   + L     +EFP 
Sbjct: 61  SDNEGLIAVPAKLLLDILKTFPE-QPLTFVVEDNNTVEISSNHG--KYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S  +   +L   + +T FA   +++R  ++GIFF  + E L    VATD H+
Sbjct: 118 AVELANPSSTTIIGDILATAINKTIFAAGNDDLRPVMSGIFFQFSPESLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      DI A  +++   I+P+K +  +  IL   +S V +  +ES    + E+  +  
Sbjct: 176 LVKYQRTDISA--SQVAEFIMPKKPLNLLKGILGGSESDVTIEYNESNAKFSFENTELIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N   L ++   L  +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNVLSISRNQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L+E++ N++SD+V
Sbjct: 294 EDIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLANLTSDDV 336


>gi|189460118|ref|ZP_03008903.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136]
 gi|189433160|gb|EDV02145.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136]
          Length = 374

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 174/345 (50%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN++P+    LL+  DG L + AS  E  ++ +I  +
Sbjct: 1   MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLLELQDGTLSMTASDNETTLSTSIEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G + VS+  L + ++++ +  Q   F+ N    E+ + + +  + L      E+P
Sbjct: 61  EFDGDGHLAVSSKTLLEALKEIPE--QPLSFQINPSNLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+E         + + VL   V R+ FA A +E+R  +NGI+F I  ED+ L  VA+DG
Sbjct: 119 QTQELGSNAVQVNIPADVLMGGVNRSIFATADDELRPVMNGIYFDITPEDITL--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +    A   +  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 177 HKLVRCKT-FAAHSDEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNASFTLENYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +  ++      A+ RVS+ SS     +KLSLS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKATIDRAAFISALRRVSVFSSQASSLIKLSLSENQMKIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y    M I F   +L++I++N+S+  VV
Sbjct: 296 AQDIDFSTSAEETIICQYEGNAMSIGFKSSFLIDILNNLSAQNVV 340


>gi|150025164|ref|YP_001295990.1| DNA polymerase III, beta subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771705|emb|CAL43179.1| Probable DNA polymerase III, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 372

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 172/344 (50%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L +     L + AS  E  ++ ++   
Sbjct: 1   MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELKKNELLVSASDLETTMSASLTID 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS+ V A LL +I++   +       +EN     + IS     + L   P  EFP 
Sbjct: 61  SDSQGSVAVPAKLLLEILKTFPEQPLTFTVEEN---NTIEISSQSGKYALAYAPGDEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      + + VL   V +T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 AVNLEEPSKTIVPAEVLSTAVSKTIFAAGNDDLRPVMSGVFFQFSPEGL--IFVATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   A  D+ A  +++   I+PRK +  +  IL++ +  V +  ++S    + ++  ++ 
Sbjct: 176 LVKYARTDVKA--SQVADFIMPRKPLNILKGILATSNEEVTIEYNDSNATFSFDNYILTC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +  T    +V RV+I S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLMIERTQFLSSVRRVAIFSNKTTHQIRLKIAGTELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   KA E +   Y    M I FN ++LLE++ N+ SD ++
Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLLEMLGNLQSDMIM 337


>gi|163781756|ref|ZP_02176756.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882976|gb|EDP76480.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 363

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 108/391 (27%), Positives = 201/391 (51%), Gaps = 34/391 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R +  E L  A    E+K+ +P+  + LL A    L ++A+  E  +  ++ A 
Sbjct: 1   MKLQIDREEFEEALKKAREATEKKSALPILTNFLLTAEGDRLVVRATDLENYLVLSVKAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115
           ++  GS+ VS+  L DIVR L        + E E G ++ I+ G S F L     + FPE
Sbjct: 61  IEEGGSVCVSSRSLSDIVRNLNSAL---LYIETE-GEKLVITGGRSKFKLPTVSPEDFPE 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
             FP   E E   S  L   +LK +  +T +A+A EE R  L G++   +E   ++  V 
Sbjct: 117 --FPEVVEGEEAISGNL---ILKGIA-KTEYAIAKEEARISLQGMYMKGHEG--RVHFVG 168

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234
           +DGHRL++ E     + +    +++PRK++  I R+L+  +D  V  S   S  +   E 
Sbjct: 169 SDGHRLSLFE----PEGSFSYELLIPRKSLKVIQRLLTGIEDVRVAKSEDGSFAYFTSEE 224

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             + VRL++GE+P+Y  VIP     E+ ++    ++A+ R+S ++  ++  VK++L+ + 
Sbjct: 225 WKLIVRLLEGEYPDYLAVIPHEFSAEVLLDVEETKRALKRLSGLAEGKVFPVKITLNDNL 284

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             +   +P+ G+  E ++V Y     +I FN +Y+LE ++ + S     ++  F+  + +
Sbjct: 285 AVLEFMDPEFGEGREELDVDYVGETFEIGFNGRYILEALEALDS-----EKAWFKFTTPD 339

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  +   D +S   +        ++MPMR+
Sbjct: 340 TAALLESDDYESDPYR-------CIIMPMRV 363


>gi|15604794|ref|NP_219578.1| DNA polymerase III subunit beta [Chlamydia trachomatis D/UW-3/CX]
 gi|166154296|ref|YP_001654414.1| DNA polymerase III subunit beta [Chlamydia trachomatis 434/Bu]
 gi|166155171|ref|YP_001653426.1| DNA polymerase III subunit beta [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|14194661|sp|O84078|DPO3B_CHLTR RecName: Full=DNA polymerase III subunit beta
 gi|3328470|gb|AAC67666.1| DNA Pol III (beta chain) [Chlamydia trachomatis D/UW-3/CX]
 gi|165930284|emb|CAP03770.1| DNA polymerase III, beta chain [Chlamydia trachomatis 434/Bu]
 gi|165931159|emb|CAP06724.1| DNA polymerase III, beta chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 416

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 51  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L + A I     +  G    I+ G S F L S  + +FP 
Sbjct: 111 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 167

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 225

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 399

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 400 -----------DSTRSLFVIMPMRL 413


>gi|255310878|ref|ZP_05353448.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276]
 gi|255317178|ref|ZP_05358424.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276s]
 gi|255348439|ref|ZP_05380446.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70]
 gi|255502981|ref|ZP_05381371.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70s]
 gi|255506651|ref|ZP_05382290.1| DNA polymerase III subunit beta [Chlamydia trachomatis D(s)2923]
 gi|301335548|ref|ZP_07223792.1| DNA polymerase III subunit beta [Chlamydia trachomatis L2tet1]
 gi|296434664|gb|ADH16842.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/150]
 gi|296436517|gb|ADH18687.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11222]
 gi|296438381|gb|ADH20534.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/11023]
          Length = 366

 Score =  141 bits (355), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 1   MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L + A I     +  G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|297748204|gb|ADI50750.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-EC]
 gi|297749084|gb|ADI51762.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-LC]
          Length = 428

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 63  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 122

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L + A I     +  G    I+ G S F L S  + +FP 
Sbjct: 123 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 179

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 180 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 237

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 238 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 296

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 297 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 356

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 357 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGII-- 410

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 411 ----------TDSTRSLFVIMPMRL 425


>gi|76788788|ref|YP_327874.1| DNA polymerase III subunit beta [Chlamydia trachomatis A/HAR-13]
 gi|237804424|ref|YP_002888578.1| DNA polymerase III subunit beta [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167318|gb|AAX50326.1| DNA polymerase III, beta chain [Chlamydia trachomatis A/HAR-13]
 gi|231272724|emb|CAX09628.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/TZ1A828/OT]
 gi|289525120|emb|CBJ14591.1| DNA polymerase III, beta chain [Chlamydia trachomatis Sweden2]
          Length = 416

 Score =  140 bits (354), Expect = 2e-31,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 189/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 51  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L +          E+ T   I+ G S F L S  + +FP 
Sbjct: 111 VYESGSVTIPSRRFFQLIRELTEANIEVAAHSGEMAT---ITSGSSCFRLLSMGKEDFPM 167

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 225

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 399

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 400 -----------DSTRSLFVIMPMRL 413


>gi|254796561|ref|YP_003081397.1| DNA polymerase III, beta subunit [Neorickettsia risticii str.
           Illinois]
 gi|254589798|gb|ACT69160.1| DNA polymerase III, beta subunit [Neorickettsia risticii str.
           Illinois]
          Length = 372

 Score =  140 bits (354), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 192/388 (49%), Gaps = 33/388 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           ITV++  +  +LG+   +  RK+TI    HV ++     +E+  +  E+ +T ++     
Sbjct: 9   ITVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68

Query: 63  VC-GSITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   +I+V A  LY+IV++L    G  +S  K+N +     I      F L       FP
Sbjct: 69  VIDAAISVDAFRLYEIVKRLPTDVGVVLSIEKDNLVVRSKRI-----EFSLPYLDAKHFP 123

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              EEE +     A   +++L  +  FA + E  R +LNG++F  + E  K+   ATD H
Sbjct: 124 LISEEEKIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGE--KITVAATDVH 181

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237
           RLAVA   +  +     S I+P+K V E++++ SSK+  + +   E  SRI +   S+ +
Sbjct: 182 RLAVA--TLTKKTGLKFSCIIPKKTVSEMIKLSSSKEVELFLHGREYISRIKMVFGSVRL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI G FPN+  VIP S    L  +   L  +++RV ++S  + +A+ + +   +L +
Sbjct: 240 NSKLIAGTFPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299

Query: 298 TVDNPD--MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
              N D   G+ +  +N    E  + I FN+ YLL+I+  +      + EV  + +++ S
Sbjct: 300 DASNSDASFGRELLELNEDTGE-EISIYFNHVYLLDILSALD-----NKEVTMKFNNATS 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            V  +G +           +A YV+MPM
Sbjct: 354 QVLFQGDE-----------SALYVVMPM 370


>gi|118445177|ref|YP_879297.1| DNA polymerase III subunit beta [Clostridium novyi NT]
 gi|118135633|gb|ABK62677.1| DNA polymerase III, beta subunit [Clostridium novyi NT]
          Length = 367

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 108/387 (27%), Positives = 188/387 (48%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + L A D  L +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKDNELTLIGSDIDLSIETKIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G+I V + +  +I+RKL + + +I+    N     + I    S F L      EFP
Sbjct: 61  VEEEGTIVVDSKIFGEIIRKLPNSSVKINTTDNNS----IEIFCEKSKFDLIHMDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                     F +   VLKN+++ T FA+A +E R  L GI F + +E L L  VA DG+
Sbjct: 117 GLPRINENMIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDEKLNL--VALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   +I  +     S ++P K   E+ +ILS  + +V ++ + + I  N+    +  
Sbjct: 175 RLALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKNVNITFTPNHILFNLGETKVIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF  Y ++IP     ++    + L   ++R S+M        VK  +  D L +T
Sbjct: 233 RLLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLIIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +GK  E +N+      + I FN KYL++++  +      DDE++   DSS S   
Sbjct: 293 -SNSQLGKVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPCV 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ K++ +           Y+++P+R+
Sbjct: 347 IKSKEEKAYT---------YLVLPVRL 364


>gi|296435593|gb|ADH17767.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9768]
 gi|296437453|gb|ADH19614.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11074]
 gi|297139952|gb|ADH96710.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9301]
          Length = 366

 Score =  140 bits (353), Expect = 3e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 1   MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFMATDLTVSTRCVVKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L + A I     +  G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMATITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|160891922|ref|ZP_02072925.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492]
 gi|270296412|ref|ZP_06202612.1| DNA polymerase III, beta subunit [Bacteroides sp. D20]
 gi|317480392|ref|ZP_07939492.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|156858400|gb|EDO51831.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492]
 gi|270273816|gb|EFA19678.1| DNA polymerase III, beta subunit [Bacteroides sp. D20]
 gi|316903470|gb|EFV25324.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 374

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L    S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSATVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   V+A  L D ++++ +  Q   F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDMDGRFAVTAKTLLDALKEIPE--QPLTFEINTDSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLMKNLLPKEQGMVTIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLLGALRRVSIFSSQASSLIKLRMQENLIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+DE+V
Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISADEIV 340


>gi|86143001|ref|ZP_01061423.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217]
 gi|85830446|gb|EAQ48905.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217]
          Length = 372

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L +  + +L++ AS  E  +   +   
Sbjct: 1   MKFIVSSSYLLKQLQVLGGVISNSNTLPILDNFLFELEENVLKVSASDLETTMIATLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+I V A LL D ++   +   ++F   +    E++ +HG   + L      EFP+
Sbjct: 61  SEDSGNIAVPARLLLDTLKTFPE-QPLTFVAGDNNTIEISSNHG--KYALAYASGEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      + + VL   V  T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 AVELDDPSKVTIPAGVLATAVSNTIFATGNDDLRPVMSGVFFQFDTEGLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+  Q  +    I+P+K +  +  IL+S D  + V  ++S    + +++ +  
Sbjct: 176 LVKYGRTDV--QANQTAEFIMPKKPLNLLKGILASSDDDINVEYNDSNAKFSFDNVQLLC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L ++      +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLIIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L+E+++N+++++V
Sbjct: 294 EDVDYSNKAEERLTCDYQGDDMQIGFNSRFLVEMLNNLNANDV 336


>gi|110637953|ref|YP_678160.1| DNA polymerase III subunit beta [Cytophaga hutchinsonii ATCC 33406]
 gi|110280634|gb|ABG58820.1| DNA polymerase III, beta subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 374

 Score =  140 bits (353), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 97/367 (26%), Positives = 183/367 (49%), Gaps = 13/367 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I     +P+  + L +  DG+L + AS  +  +   I   
Sbjct: 1   MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSI V A +L D ++ L +  Q   F  +     + IS  +  + L     ++FP 
Sbjct: 61  AKAKGSIAVPAKILLDTLKNLPE--QPVTFTIDPETYSIEISSDNGRYKLSGENATDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +  YS ++++ +L   +  T FA + +E++  + G++  + E +     VATDGHR
Sbjct: 119 VPGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATF--VATDGHR 176

Query: 181 L-AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      DIV+++A   ++I+P+KA+  +   L S++++VK+  + S    +  ++ M  
Sbjct: 177 LIRYRRTDIVSEMAN--TLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  FP+Y+N IP  N   L +  T++  ++ R+SI ++     V+L L+  +L ++ 
Sbjct: 235 RLIDERFPDYENAIPVDNPNVLTITRTDMMNSLKRISIYANKTTHQVRLKLAGSELQISA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++ D   +A E +   +    M+I FN K+L+E++ N+ S      ++     + N +  
Sbjct: 295 EDLDFSNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDS-----PQISMHFSAPNRAGI 349

Query: 359 IRGKDKD 365
           I   DKD
Sbjct: 350 ITPADKD 356


>gi|153808234|ref|ZP_01960902.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185]
 gi|149129137|gb|EDM20353.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185]
          Length = 374

 Score =  140 bits (352), Expect = 4e-31,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 169/345 (48%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +  Q   F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPE--QPLTFLINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + VL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  SV +   E      ++S  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPATLLKNLLPKEQGSVTIEFDERNAVFMLDSYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS+DEVV
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISADEVV 340


>gi|224023849|ref|ZP_03642215.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM
           18228]
 gi|224017071|gb|EEF75083.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM
           18228]
          Length = 374

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 173/345 (50%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ +I  S
Sbjct: 1   MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLIELQDGTLSMTASDNETTLSTSIEVS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G   VS+  L + ++++ +  Q   F+ N    E+ + + +  + L      E+P
Sbjct: 61  DYEEDGRFAVSSKTLLEALKEIPE--QPLSFQINSSNLEITVQYQNGKYSLMGQSADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E  E      + + +L   + R+ FA A +E+R  +NGI+F I  ED+ L  VA+DG
Sbjct: 119 QASELNEGAVQVVMGADILTTGINRSLFATADDELRPVMNGIYFDITTEDITL--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V      A   +  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 177 HKL-VRNKTYAAHGEEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNATFTLENYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +  ++  +   A+ RVS+ SS     +KLSLS + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAIIDRASFISALRRVSVFSSQASSLIKLSLSENMMKIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A ES+   Y+   M I F   +L++I++NI+S  V+
Sbjct: 296 AQDIDFSTSAEESLICQYDGNAMSIGFKSSFLIDILNNIASQNVI 340


>gi|318042961|ref|ZP_07974917.1| DNA polymerase III subunit beta [Synechococcus sp. CB0101]
          Length = 376

 Score =  140 bits (352), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 104/392 (26%), Positives = 199/392 (50%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKLVCSQAELNASLQLVSRAVAGRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV   G+IT+ A L  +IV ++   + IS   E E G +V ++    ++ ++  P  +F
Sbjct: 61  ASVHTSGAITLPARLFGEIVARMPSDSPISLSCE-EGGEQVELTSASGSYQMRGMPAEDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +     +L   VL   +  T FA +++E +  L G+   +N E L+ CA ATDG
Sbjct: 120 PELPLAQAATPIKLDPDVLAKGLRATLFASSSDEAKQLLTGVHLGLNAEGLE-CA-ATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236
           HRLAV  ++  A+      + VP +++ E+ R+LSS+     VSL     ++        
Sbjct: 178 HRLAVLRLENNAEGEAELDVTVPARSLRELERLLSSRSGGDPVSLFCDRGQVVFQFADQV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDK 294
           ++ R +DG +PNY+ +IP S  + L+++   L  A++RV++++      VK++    + +
Sbjct: 238 LTSRSLDGTYPNYRQLIPESFARSLKLDRKGLLGALERVAVLADQHNNVVKITSDPVAGQ 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++ D  D+G   E++    +   + I FN +Y+LE +  +++     + V  R ++  
Sbjct: 298 LAISADAQDVGSGSEAIAADVSGDAIQIAFNVRYVLEGLKAMAA-----ERVELRCNAPT 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
           + V +  +D           +AF Y++MP++I
Sbjct: 353 TPVVLAPQDD----------SAFTYLVMPVQI 374


>gi|86130089|ref|ZP_01048689.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134]
 gi|85818764|gb|EAQ39923.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134]
          Length = 372

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 99/344 (28%), Positives = 173/344 (50%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L + AS  E  +T  +   
Sbjct: 1   MKFIVSSSYLLKQLQVLGGVINNSNTLPILDNFLFELDGNALTVSASDLETTMTSKLDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT-EVNISHGDSNFYLQSFPESEFP 119
               G+I + A LL D ++   +  Q   F ++E  T E++ +HG   + L     +EFP
Sbjct: 61  SSDNGAIALPARLLLDTLKTFPE--QPLTFTQHENNTIEISSNHG--KYALAYADGAEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E     ++  SVL   +  T FA   +++R  ++G+FF    + L    VATD H
Sbjct: 117 NAVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFATDGLTF--VATDAH 174

Query: 180 RLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +L      D+VA  A     I+P+K +  +  ILS+ D  + V  +ES      +++ + 
Sbjct: 175 KLVKYGRTDVVASQAA--EFIMPKKPLNLLKGILSTSDDEISVEYNESNAKFTFDNVELV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY+ VIP  N   L ++      +V RVSI S+     ++L ++  +L ++
Sbjct: 233 CRLIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNIS 292

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ D   KA E +   Y    M I FN ++L E+++N+++++V
Sbjct: 293 AEDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNANDV 336


>gi|332293550|ref|YP_004432159.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171636|gb|AEE20891.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 372

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 172/343 (50%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L + +   L + AS  E  +T  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELDGNTLTVSASDLETTMTSKLDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I + A LL D ++   +   ++F +      E++ +HG   + L     +EFP+
Sbjct: 61  SSDNGAIALPARLLLDTLKTFPE-QPLTFTQHENNTVEISSNHG--KYALAYADGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     ++  SVL   +  T FA   +++R  ++G+FF    + L    VATD H+
Sbjct: 118 AVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFGTDGLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+VA  A     I+P+K +  +  ILS+ D  + V  +ES    + +++ +  
Sbjct: 176 LVKYGRTDVVASQAA--EFIMPKKPLNLLKGILSTSDDEIAVEYNESNAKFSFDNVELVC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N   L ++      +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L E+++N+++++V
Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNANDV 336


>gi|332521540|ref|ZP_08397994.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332042939|gb|EGI79138.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 372

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 175/343 (51%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L   ++  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDIDNNALTVSASDLETTMSSTLDIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS+ + A LL D ++   +   ++F  E     E++ +HG   + L     +EFP 
Sbjct: 61  SDSKGSVAIPARLLLDTLKTFPE-QPLTFTVEENNTVEISSNHG--KYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  ++  +L   + +T FA   +++R  ++G+FF  + ++L    VATD H+
Sbjct: 118 AVSLEDPSATTISGDILATAISKTIFAAGNDDLRPVMSGVFFQFSTDNLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+ A  +++   I+P+K +  +  ILSS D  V +  ++S      E+  +  
Sbjct: 176 LVKYTREDVSA--SQVAEFIMPKKPLTLLKGILSSSDQDVTIEYNDSNAKFTFENTILIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L ++ T    +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLSIDRTQFLNSVKRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L E+++N+++ +V
Sbjct: 294 EDIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLNATDV 336


>gi|299820841|ref|ZP_07052730.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM
           20601]
 gi|299817862|gb|EFI85097.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM
           20601]
          Length = 381

 Score =  139 bits (351), Expect = 5e-31,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 182/358 (50%), Gaps = 26/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFIIKRDRLVQAVNEVSRAISSRTTIPILTGIKITVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN-EL----GTEVNISHGDSN 107
                   V+  G I + A    DIVR+L D        EN EL      + NI  G ++
Sbjct: 61  DNDEVIVEVESFGGIVLQARYFGDIVRRLPD--------ENVELEVVSSYQTNIRSGQAS 112

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
           F L      E+P   E        L  +VLKN++ +T FA++  E+R  L G+ + I E 
Sbjct: 113 FTLNGLDPLEYPKLPEVTDGKKIILPINVLKNIIRQTVFAVSAIEVRPVLTGVNWLIKEN 172

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
              L AVATD HRLA+ E+ +   + +  ++++P K++ E+ +IL     S+++ ++ ++
Sbjct: 173 --LLTAVATDSHRLALREIPLETSLEEDYNVVIPGKSLSELNKILDDASESIEMVIANNQ 230

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAV 286
           I   ++ L    RL++G +P+   +IP     EL +N  +  QA+DR S+++   R   +
Sbjct: 231 ILFKLKDLLFYSRLLEGSYPDTSRLIPTDIKSELVINSKSFLQAIDRASLLARENRNNVI 290

Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           KLS L S ++ ++ ++P++G   E + +  ++   + I FN KY+++ +     D++V
Sbjct: 291 KLSTLESGQVEVSSNSPEIGNVSERVFSQQFSGEELKISFNGKYMMDALRAFEGDDIV 348


>gi|237802508|ref|YP_002887702.1| DNA polymerase III subunit beta [Chlamydia trachomatis B/Jali20/OT]
 gi|231273742|emb|CAX10522.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/Jali20/OT]
          Length = 416

 Score =  139 bits (351), Expect = 6e-31,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 51  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L + A I     +  G    I+ G S F L S  + +FP 
Sbjct: 111 VYESGSVTIPSRRFFQLIRELTE-ANIEVAAHS--GEMAIITSGSSCFRLLSMGKEDFPM 167

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSI--ANGTMTVVGTDGKR 225

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ + S DE+V   +    DS N  +   
Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-SRDELVQLGIS---DSYNPGIIT- 399

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 400 -----------DSTRSLFVIMPMRL 413


>gi|148378013|ref|YP_001252554.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC
           3502]
 gi|153931816|ref|YP_001382412.1| DNA polymerase III subunit beta [Clostridium botulinum A str. ATCC
           19397]
 gi|153937046|ref|YP_001385964.1| DNA polymerase III subunit beta [Clostridium botulinum A str. Hall]
 gi|148287497|emb|CAL81556.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC
           3502]
 gi|152927860|gb|ABS33360.1| DNA polymerase III, beta subunit [Clostridium botulinum A str. ATCC
           19397]
 gi|152932960|gb|ABS38459.1| DNA polymerase III, beta subunit [Clostridium botulinum A str.
           Hall]
          Length = 367

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A L  +I+RKL  D  +I+  ++N     + I   +S F L      EFP
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPGEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +         F +  S LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+
Sbjct: 117 NPPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   ++V     + ++I P K + E+ +IL   + +V ++ + + I  +I    +  
Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF +Y+++IP   + ++    + L  +++R S+M+       VK   S DK+ +T
Sbjct: 233 RLLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E + V      + I FN KYLL+++  +      D+EVV    SS S   
Sbjct: 293 -SNSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+  + +         N  Y+++P+R+
Sbjct: 347 IKNTEIN---------NCTYLVLPVRL 364


>gi|325288100|ref|YP_004263890.1| DNA polymerase III subunit beta [Cellulophaga lytica DSM 7489]
 gi|324323554|gb|ADY31019.1| DNA polymerase III, beta subunit [Cellulophaga lytica DSM 7489]
          Length = 373

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 174/343 (50%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L +     L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELKQNSLTVSASDLETTMSSVLEVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I + A LL + ++   +   ++F  E     E++ +HG   + L     +EFP+
Sbjct: 61  SDNEGTIALPAKLLLETLKTFPE-QPLTFVVEENNTVEISSNHG--KYALAYVDGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +   +L   + +T FA   +++R  ++G+FF  + E+L    VATD H+
Sbjct: 118 AVELSNPSTTTILGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+ A  +++   I+P+K +  +  IL   ++ V +  +ES      ++  +  
Sbjct: 176 LVKYQRTDVTA--SQVAEFIMPKKPLTLLKGILGGSENDVTIEYNESNAKFTFDNTELIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N   L ++ T L  +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNVLSISRTQLLSSVRRVSIFSNKTTHQIRLKVAGAELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    M I FN ++L+E++ N+SSD+V
Sbjct: 294 EDIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLGNLSSDDV 336


>gi|260062622|ref|YP_003195702.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501]
 gi|88784189|gb|EAR15359.1| DNA polymerase III, beta chain [Robiginitalea biformata HTCC2501]
          Length = 372

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/343 (27%), Positives = 172/343 (50%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L   N   L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVISNSNTLPILDNFLFDLNGTKLTVSASDLETTMSSELEVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I V A LL D ++   +   ++F  E+    E++ SHG   + L     +EFP 
Sbjct: 61  SGDKGTIAVPARLLLDTLKTFPE-QPLTFVVEDNNTVEISSSHG--KYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E       E+   +L   +++T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 AVELPDPSKTEIMGDILATAIDKTLFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+  Q +++   I+P+K +  +  IL+  +  V V+ ++S       +  +  
Sbjct: 176 LVKYRRTDV--QASEVAEFIMPKKPLNLLKGILAGSEDPVTVAYNDSNAKFLFANTVLVC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +  + L  +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLVIQRSQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   KA E +   Y    + I FN ++L+E++ N+ SDE+
Sbjct: 294 EDVDYSNKAEERLTCSYQGDDLQIGFNSRFLVEMLGNLGSDEI 336


>gi|167036433|ref|YP_001664011.1| DNA polymerase III subunit beta [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038677|ref|YP_001661662.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X514]
 gi|256751454|ref|ZP_05492332.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913763|ref|ZP_07131080.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561]
 gi|307723220|ref|YP_003902971.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X513]
 gi|320114859|ref|YP_004185018.1| DNA polymerase III subunit beta [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166852917|gb|ABY91326.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X514]
 gi|166855267|gb|ABY93675.1| DNA polymerase III, beta subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749673|gb|EEU62699.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890448|gb|EFK85593.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561]
 gi|307580281|gb|ADN53680.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X513]
 gi|319927950|gb|ADV78635.1| DNA polymerase III, beta subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 370

 Score =  139 bits (350), Expect = 7e-31,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 178/346 (51%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A  G ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  G I V A +  ++VRKL +G  +I    E++    VN+     NF +      EFP
Sbjct: 61  IEEEGEIVVPAKIFSELVRKLPEGDVKI----ESDSQNTVNVVCDSINFTIAGSDAVEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L  ++LK+L+ +T F +A E+ R  L G+ F + + ++K  AVA DG 
Sbjct: 117 EIPLVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVK--AVALDGF 174

Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           R+A+    +E     +  +  SI++P K + EI RIL  +++ +++  + +++   IE+ 
Sbjct: 175 RMAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +  DK 
Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                N + GK IE + V      ++I FN +YLL+ +  I  +E+
Sbjct: 294 ITVSSNSEKGKMIEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEI 339


>gi|153939951|ref|YP_001389371.1| DNA polymerase III subunit beta [Clostridium botulinum F str.
           Langeland]
 gi|168181117|ref|ZP_02615781.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916]
 gi|170757193|ref|YP_001779628.1| DNA polymerase III subunit beta [Clostridium botulinum B1 str.
           Okra]
 gi|226947224|ref|YP_002802315.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str.
           Kyoto]
 gi|152935847|gb|ABS41345.1| DNA polymerase III, beta subunit [Clostridium botulinum F str.
           Langeland]
 gi|169122405|gb|ACA46241.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str.
           Okra]
 gi|182668123|gb|EDT80102.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916]
 gi|226843050|gb|ACO85716.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str.
           Kyoto]
 gi|295317478|gb|ADF97855.1| DNA polymerase III, beta subunit [Clostridium botulinum F str.
           230613]
 gi|322804280|emb|CBZ01830.1| DNA polymerase III beta subunit [Clostridium botulinum H04402 065]
          Length = 367

 Score =  139 bits (350), Expect = 8e-31,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A L  +I+RKL  D  +I+  ++N     + I   +S F L      EFP
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +         F +  S LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+
Sbjct: 117 NPPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   ++V     + ++I P K + E+ +IL   + +V ++ + + I  +I    +  
Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF +Y+++IP   + ++    + L  +++R S+M+       VK   S DK+ +T
Sbjct: 233 RLLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E + V      + I FN KYLL+++  +      D+EVV    SS S   
Sbjct: 293 -SNSQLGMVREELKVVLQGDDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+  + +         N  Y+++P+R+
Sbjct: 347 IKNTEIN---------NCTYLVLPVRL 364


>gi|187777366|ref|ZP_02993839.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC
           15579]
 gi|187774294|gb|EDU38096.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC
           15579]
          Length = 367

 Score =  139 bits (349), Expect = 9e-31,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A L  +I+RKL  D  +I+  ++N     + I   +S F L      EFP
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +         F +  S LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+
Sbjct: 117 NPPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   ++V     + ++I P K + E+ +IL   + +V ++ + + I  +I    +  
Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF +Y+++IP   + ++    + L  +++R S+M+       VK   S DK+ +T
Sbjct: 233 RLLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E + V      + I FN KYLL+++  +      D+EVV    SS S   
Sbjct: 293 -SNSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+  + +         N  Y+++P+R+
Sbjct: 347 IKNTEIN---------NCTYLVLPVRL 364


>gi|330835985|ref|YP_004410626.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374]
 gi|329747888|gb|AEC01244.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374]
          Length = 371

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 172/331 (51%), Gaps = 7/331 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ I + +  A     ++N++ +  +VLL+  + LL IKA+  ++     IP  
Sbjct: 1   MKFVCQKATIFKEISLALDFTSQRNSLSIVSNVLLETKENLLVIKATDQKVGFHSQIPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE-LGTEVNISHGDSNFYLQSFPESEFP 119
               GS TV       I+R L +   I F ++NE L  E      D  F L++    +FP
Sbjct: 61  TLEEGSTTVFCDKFLGILRSLPE-TDILFEEKNEKLYIEPVAQKMD--FQLRTIGSDKFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +E   V  F ++     ++V +T FA++ +E RYY++G++   N   L +  VATDG 
Sbjct: 118 DLEEHSNVPFFTISQKDFLDMVNQTIFAISEDETRYYMSGVYLEYNTSSLIM--VATDGR 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  E  I   I + PS+I+P K +  ++R +++ + + ++ ++E+ I  +     +  
Sbjct: 176 RLSYIERKIEETIPRFPSVIIPAKFL-TLIRKMATGEGTFRLGVTENTIFASFGGQFIYS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G+FPNY+ VIP S    +  +  ++ +AV RVS+    + + + L +  + + ++ 
Sbjct: 235 ALINGKFPNYRRVIPESQSTSVITSVADILEAVKRVSLFVETKAKKIFLDIDQNGITVSS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLL 330
           +  D+G A E++   Y+  P  I  NY Y++
Sbjct: 295 EENDLGIARETITADYSGEPCRISLNYGYIM 325


>gi|307320162|ref|ZP_07599582.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
 gi|306894208|gb|EFN24974.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
          Length = 372

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 103/373 (27%), Positives = 183/373 (49%), Gaps = 28/373 (7%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV--DVCGSITVSAHLLYDIV 78
           +  KNTIP   ++ ++ +   + ++A+  +IEI     A +  D  G  T  A  +  IV
Sbjct: 20  VNSKNTIPHLANIAVERHAEGIRLRATNLDIEIAAPFQAEIGADFSG-FTFPAKTVTSIV 78

Query: 79  RKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135
             + DG  ISF +   LG +   V I  G S   +   P ++FP   + E  ++  L SS
Sbjct: 79  GAVDDGKDISF-EAVMLGNKLEAVTIRSGRSRIKVPILPLADFPILDQGELPFAVSLGSS 137

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA---VAEVDIVAQI 192
                +    +A +TEE R+YLNG+F   +E  L    VATDGHR+A   +   D+   I
Sbjct: 138 SFIRCLSAVDYACSTEETRHYLNGVFLDASEAGLMF--VATDGHRMARRLLPSSDVDDPI 195

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
             MP +I+PR+    +++ L  KD ++ +SLSE RI     ++ +  +L++G +P+Y+ +
Sbjct: 196 ESMPKVILPRETAPLLVKHLP-KDETLSISLSEFRIRFAAGNIVIISKLVEGTYPDYRRL 254

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312
            P S+    R++   L+ A+ RV  +++ +  AV+ +       +T    D G+A E + 
Sbjct: 255 SPGSHKIRARISGAELKAAIARVLTVNTEKGNAVRFTFDKTSATLTSRPGDAGEA-EDVV 313

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372
              ++    +  N  YL E ID++ ++E+  D      +   S + +R         K  
Sbjct: 314 TAASDGEFVVGMNGAYLRETIDHLDTEEIELD-----FNDPASPILLR---------KPG 359

Query: 373 KVNAFYVLMPMRI 385
           + +   ++MPMR+
Sbjct: 360 ETDTHTIIMPMRV 372


>gi|18308984|ref|NP_560918.1| DNA polymerase III subunit beta [Clostridium perfringens str. 13]
 gi|110798947|ref|YP_694477.1| DNA polymerase III subunit beta [Clostridium perfringens ATCC
           13124]
 gi|110803106|ref|YP_697353.1| DNA polymerase III subunit beta [Clostridium perfringens SM101]
 gi|168207735|ref|ZP_02633740.1| DNA polymerase III, beta subunit [Clostridium perfringens E str.
           JGS1987]
 gi|168212005|ref|ZP_02637630.1| DNA polymerase III, beta subunit [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215268|ref|ZP_02640893.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str.
           F4969]
 gi|168218305|ref|ZP_02643930.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC
           8239]
 gi|169343474|ref|ZP_02864474.1| DNA polymerase III, beta subunit [Clostridium perfringens C str.
           JGS1495]
 gi|182627053|ref|ZP_02954778.1| DNA polymerase III, beta subunit [Clostridium perfringens D str.
           JGS1721]
 gi|18143659|dbj|BAB79708.1| DNA-directed DNA polymerase III beta chain [Clostridium perfringens
           str. 13]
 gi|110673594|gb|ABG82581.1| DNA polymerase III, beta subunit [Clostridium perfringens ATCC
           13124]
 gi|110683607|gb|ABG86977.1| DNA polymerase III, beta subunit [Clostridium perfringens SM101]
 gi|169298426|gb|EDS80515.1| DNA polymerase III, beta subunit [Clostridium perfringens C str.
           JGS1495]
 gi|170660920|gb|EDT13603.1| DNA polymerase III, beta subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170710065|gb|EDT22247.1| DNA polymerase III, beta subunit [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713330|gb|EDT25512.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str.
           F4969]
 gi|177907579|gb|EDT70218.1| DNA polymerase III, beta subunit [Clostridium perfringens D str.
           JGS1721]
 gi|182379690|gb|EDT77169.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC
           8239]
          Length = 366

 Score =  139 bits (349), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/387 (27%), Positives = 191/387 (49%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T +++ + E +  A + I  K+T+P+   + ++A++ ++ I  S  ++ I     A 
Sbjct: 1   MIFTCDKNKLQESIAIAQKAITGKSTMPILEGLYIEASENIVTIIGSDKDVSIETKFEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + V A +  +I+RKL  D  +I    E      + I+   S F L      +FP
Sbjct: 61  VTEPGKLVVDAKIFGEIIRKLPNDKIKIETVSEEA----IRITCQKSVFDLLHMNAEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  +      F +   +LKN+++ T FA+A +E R  L GI F I  +D KL  VA DG+
Sbjct: 117 SLPKINENMIFSINQGILKNMIKGTSFAIAQDETRPILQGILFEI--KDSKLNLVALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   +I        + ++P K + E+ +IL   +  V ++ + + I  N+    +  
Sbjct: 175 RLAIRTENI--DTNNTINAVIPGKTLNEVAKILEDSEEIVNITFTPNHILFNMGDTKVIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF  Y  ++P  +  ++ V+   L+  ++R S+M+       VK  ++ + + +T
Sbjct: 233 RLLEGEFIKYDALLPKEHKLQIEVDKQTLQNGIERASLMAKEGNSNLVKFDITDENIVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +GK  E + +      + I FN KYLL+++ N+      +D++  R+ SS S   
Sbjct: 293 -SNSQLGKVREEVTIKLQGDEIQIAFNSKYLLDVLKNME-----EDKIELRMTSSISPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR K+ D            Y+++P+RI
Sbjct: 347 IRNKNNDL---------CEYLVLPVRI 364


>gi|225848547|ref|YP_002728710.1| DNA polymerase III subunit beta [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643105|gb|ACN98155.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 362

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/366 (29%), Positives = 185/366 (50%), Gaps = 21/366 (5%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           I E+K  +PV  + LL+A +G L I+ +  E+  T  I A V   GS+ V+A  L DI +
Sbjct: 18  IAEKKAALPVLTNFLLKAENGKLIIQGTDLEVFTTYWINADVKEEGSVCVNAKKLTDISK 77

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L   +      +N L     I  G + + L +    +FP  +E     +  ++   L  
Sbjct: 78  VLPAASVSLTLDKNNL----KIVSGKTKYSLPTTDPEDFPVFEEFPADLAVRVSGDTLLK 133

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
            + +T +A + +E R+ LNG+ F   E+ L    VATDGHRLA+ + ++     +    I
Sbjct: 134 GITKTVYAASKDESRFALNGVCFSFVEKYLDF--VATDGHRLALYKGEVSGGSIEG-KYI 190

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           VP+KA+ EI +++S  D  V+V++S S I        +S RL++G FP+Y  VIP S + 
Sbjct: 191 VPQKALSEIKKLVSEYDD-VEVAISGSSIFFKGSDWMLSARLLEGVFPDYTQVIPKSFNI 249

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
           E+ V   ++  +V RV +      + +KL+L  +KL ++    +   A + +++ YN+  
Sbjct: 250 EVEVLKGDILDSVKRVVVAEESDAKPIKLTLKENKLIISTPTVEDAYAEDEIDIEYNQEE 309

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
            +I FN KY+++ I     DE+ D ++V +  + +S   I  KD+              V
Sbjct: 310 FEIGFNGKYIIDAI-----DEIEDSKIVLKFINKDSQTVIVPKDESEP--------YLAV 356

Query: 380 LMPMRI 385
           +MPM I
Sbjct: 357 VMPMNI 362


>gi|189467073|ref|ZP_03015858.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM
           17393]
 gi|189435337|gb|EDV04322.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM
           17393]
          Length = 355

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/326 (28%), Positives = 166/326 (50%), Gaps = 8/326 (2%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIV 78
           +I  KN +P+    L +  DG L +  S  E  +  ++  +  D  G   V+A  + D +
Sbjct: 1   MINSKNALPILDCFLFELKDGTLSVTVSDSETTMVTSVEVNESDADGRFAVAAKTILDAL 60

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP-STKEEEYVYSFELASSVL 137
           +++ +  Q   F+ N    E+ + + +  + L      EFP S    +     E+ +SVL
Sbjct: 61  KEIPE--QPLSFEVNTDSLEITVQYQNGKYSLMGQNADEFPQSAMLGDNAVRVEMEASVL 118

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
              + R  FA A +E+R  +NGI+F I  ED+ +  VA+DGH+L   +  + A+  +  +
Sbjct: 119 LGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDGHKLVRCKT-LAAKGNERAA 175

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
            I+P+K    I  +L  +   V +   E      +E   M  RLI+G +PNY +VIP +N
Sbjct: 176 FILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMVCRLIEGRYPNYNSVIPQNN 235

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYN 316
             ++ V+   L  A+ RVSI SS     +KL +  +++ ++  + D    A E++   Y+
Sbjct: 236 PYKVTVDRIQLVGALRRVSIFSSQASSLIKLRMQPNQIVISAQDIDFSTSAEETLACQYD 295

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVV 342
             PM I F   +L++I++NI++DEV+
Sbjct: 296 GNPMSIGFKSTFLIDILNNIAADEVI 321


>gi|305666627|ref|YP_003862914.1| DNA polymerase III subunit beta [Maribacter sp. HTCC2170]
 gi|88708898|gb|EAR01133.1| DNA polymerase III, beta chain [Maribacter sp. HTCC2170]
          Length = 372

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 95/344 (27%), Positives = 173/344 (50%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L       L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNKLTVSASDLETTMSSVLDVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I V A LL + ++   +   ++F  E+    E++ +HG   + L     +EFP 
Sbjct: 61  SDNEGTIAVPAKLLLETLKTFPE-QPLTFVVEDNNTVEISSNHG--KYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S  +   +L   + +T FA   +++R  ++G+FF  + E+L    VATD H+
Sbjct: 118 AVELANPSSTNIMGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   +  D+ A  +++   I+P+K +  +  IL+  +S V +  ++S      ++  +  
Sbjct: 176 LVKYQRSDVTA--SQVAEFIMPKKPLNLLKGILAGSESEVAIEYNDSNAKFTFDNAELIC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L +       +V RVSI S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLSIARNQFLSSVRRVSIFSNKTTHQIRLKIAGAELNISA 293

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   KA E +   Y    M I FN ++L E+++N++SDEV 
Sbjct: 294 EDIDYSNKAEERLTCSYQGDDMQIGFNSRFLTEMLNNLNSDEVA 337


>gi|254520695|ref|ZP_05132751.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA]
 gi|226914444|gb|EEH99645.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA]
          Length = 366

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 105/383 (27%), Positives = 194/383 (50%), Gaps = 27/383 (7%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E+  + E +  A + I  K T+P+   + + A +  L +  S  ++ I   + A +   G
Sbjct: 6   EKQKLQEGISIANKAITGKTTMPILEGIYINAKNEGLTLIGSDMDVSIETKVDADILEEG 65

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125
            I + A +  +I+RKL +        EN++   + I+   S F L      ++P+     
Sbjct: 66  MIVIDARIFGEIIRKLPNSDIKIETLENDI---IQITCEKSVFNLVYMNGEDYPALPSIN 122

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              S E++ ++LKN+++ T FA+A +E R  L GI F +  ++L L  VA DG+RLAV  
Sbjct: 123 ENLSVEVSQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDGYRLAVRS 180

Query: 186 --VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             +D   +I     +++P K + E+ +IL      VK++ + + I  N+ +  +  RL+D
Sbjct: 181 EFLDNDNEI----EVVIPGKTLNEVSKILEDVSDIVKITFTNNHILFNLNNTKVISRLLD 236

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNP 302
           G+F NY +++P  +   + VN   L+  ++R S+M+       +KL +  + + +T  N 
Sbjct: 237 GKFVNYSSLLPQEHKILVDVNKQQLQSCIERASLMAKDSNSNLIKLEVQEENMIIT-SNS 295

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
            +GK  E + +     P+ I FN +YLL+++ N+      DDEV   + SS S   I+ K
Sbjct: 296 QLGKVREELTINLQGEPIQIAFNSRYLLDVLKNVD-----DDEVKLEMTSSVSPCVIKCK 350

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
           + D         N+ Y+++P+R+
Sbjct: 351 NTD---------NSKYLVLPVRL 364


>gi|170761565|ref|YP_001785337.1| DNA polymerase III subunit beta [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408554|gb|ACA56965.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 367

 Score =  138 bits (348), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A L  +I+RKL  D  +I+  ++N     + I   +S F L      EFP
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +         F +  + LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+
Sbjct: 117 NPPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   ++V     + ++I P K + E+ +IL   + +V ++ + + I  +I    +  
Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF +Y+++IP   + ++      L  +++R S+M+       VK   S+DK+ +T
Sbjct: 233 RLLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E + V      + I FN KYLL+++  +      DDEVV    SS S   
Sbjct: 293 -SNSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+  + +         N  Y+++P+R+
Sbjct: 347 IKNTELN---------NCTYLVLPVRL 364


>gi|237727133|ref|ZP_04557614.1| DNA polymerase subunit III [Bacteroides sp. D4]
 gi|265750417|ref|ZP_06086480.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA]
 gi|229433989|gb|EEO44066.1| DNA polymerase subunit III [Bacteroides dorei 5_1_36/D4]
 gi|263237313|gb|EEZ22763.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA]
          Length = 374

 Score =  138 bits (347), Expect = 1e-30,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ ++  +
Sbjct: 1   MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  + + ++++ +  Q   F  N    E+ + + +  + L      E+P
Sbjct: 61  ESDGDGRFAVSSKTILEALKEIPE--QPLTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                        + + V+   + R+ FA A +E+R  +NGI+F I  ED+    VA+DG
Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     VA   +  + I+P+K    +  +L  +   V++   +      +E+ SM 
Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +  ++   L  A+ RVS+ SS     +KL LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+ E++
Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQEIL 340


>gi|319901724|ref|YP_004161452.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108]
 gi|319416755|gb|ADV43866.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108]
          Length = 374

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 100/345 (28%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLTVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   V A  L D ++++ +  Q   F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDMDGRFAVIAKTLLDALKEIPE--QPLTFEINTDSLEITVQYQNGKYSLVGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAAKGNERAAFILPKKPASLMKNLLPKEQGNVVIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENLIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+DEV+
Sbjct: 296 AQDIDFSTSAEENLVCQYAGNPMSIGFKSTFLIDILNNISADEVI 340


>gi|188584644|ref|YP_001916189.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349331|gb|ACB83601.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 370

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 106/387 (27%), Positives = 189/387 (48%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MKI  ++ ++ E L    R I  KNTIP      +Q + D  L I     E+ I   +  
Sbjct: 1   MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLST 60

Query: 60  SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +   GS+ V     +DI++KL +D    S  +EN L   + I  G   + ++     E+
Sbjct: 61  EILEQGSVVVPTKF-FDIIKKLPEDQITFSVDQENYL---ITIESGQVYYEIKGLDPEEY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E E   SF +   +LK ++ +T FA++ EE +    G+    +  D KL  VATD 
Sbjct: 117 PKLPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKFDS-DNKLDMVATDS 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA  +  I          I+P+KA+G++ RI+S +D  + + L+        E + + 
Sbjct: 176 YRLAWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLF 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCM 297
            +LID EFPN   VIP +   ++ ++   L+ +++R S+++S      VKL++S + + +
Sbjct: 236 SKLIDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T ++P  GK  E + +Y     + I  N ++++E++  I      +D+V      S S +
Sbjct: 296 TSNSPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIE-----EDQVELEFTGSYSPM 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            IR ++ D           F++++P+R
Sbjct: 351 IIRPREND---------QYFHLILPVR 368


>gi|255527585|ref|ZP_05394449.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
 gi|296186783|ref|ZP_06855184.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
 gi|255508718|gb|EET85094.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
 gi|296048497|gb|EFG87930.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
          Length = 367

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 107/387 (27%), Positives = 186/387 (48%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T E+S + E +    + I  K+T+P+   + ++ ++  L +  S  ++ I   I + 
Sbjct: 1   MKFTCEKSILQEGISTVQKAITGKSTLPILNGIHIKTHENELILTGSDIDLSIESKIKSD 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   GSI + A +  +I+RKL  D   IS    N     + I    S F L      +FP
Sbjct: 61  IIEEGSIVIDAKIFGEIIRKLDNDTIHISTIDNNS----IEIVCKKSRFTLIHMNSEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                     F +  S+LKN++  T FA A +E R  L GI F I  +D KL  VA DG+
Sbjct: 117 ELPNINENMIFSIPQSILKNMIRGTIFATAQDETRPILTGILFEI--KDKKLNLVALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +      + S ++P K + E+ +IL   D SV ++ + + I  ++    +  
Sbjct: 175 RLALKSETL--DTDNIISAVIPGKTLSEVSKILEENDESVNITFTPNHILFSVGETKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF  Y ++IP   + ++      L  +++R S+M        +K  +  + + +T
Sbjct: 233 RLLEGEFIKYNSIIPEEYNLKIIAKRIVLLNSIERASLMGKDGNTNLIKFDIEDENMVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E +N+     P+ I FN KYL++++  +      +DEVV  L SS S   
Sbjct: 293 -SNSQLGMVREELNIILQGEPLQIAFNSKYLIDVLKIME-----EDEVVIELSSSVSPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ K+ +         N  Y+++P+R+
Sbjct: 347 IKNKNTN---------NCTYLVLPVRL 364


>gi|20806544|ref|NP_621715.1| DNA polymerase III subunit beta [Thermoanaerobacter tengcongensis
           MB4]
 gi|20514981|gb|AAM23319.1| DNA polymerase III beta subunit [Thermoanaerobacter tengcongensis
           MB4]
          Length = 370

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 179/346 (51%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ +LE +  A R +  + T+P+   + + A   ++++  +  EI I   IPA 
Sbjct: 1   MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  G   V A +  D+V+KL +G  ++    +N     VN+  GD NF +      EFP
Sbjct: 61  IEEEGETVVPARIFSDLVKKLPEGEVEVKSDSQNT----VNVVSGDINFSIAGSNPEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E     SF+L  S+LK+L+++T F ++ E+ R  L G+ F +   +LK  AVA DG 
Sbjct: 117 EIPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGF 174

Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           R+A+    +E     + A+  S+++P   + EI RIL  +++ V +  + +++   I++ 
Sbjct: 175 RMAIYSYKSEKSFFDEEAEKYSLVIPGDTIDEISRILEDEETEVIIYHTSNQVLFQIDNT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G F NY  V+P     E+ +N     ++++R S+++  +   VK  +  D  
Sbjct: 235 KVISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEI-GDSF 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +   + + G   E + V      ++I FN +YLL+ +  I+ +EV
Sbjct: 294 IVISSSSEKGSMSEKLEVEVKGMLLEIAFNSRYLLDALKAINEEEV 339


>gi|255010438|ref|ZP_05282564.1| putative DNA polymerase III beta chain [Bacteroides fragilis
           3_1_12]
 gi|313148242|ref|ZP_07810435.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12]
 gi|313137009|gb|EFR54369.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12]
          Length = 374

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 170/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L Q  DG L +  S  E  +  ++  +
Sbjct: 1   MKFIVSSTALSSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +  Q   F+      E+ + + +  + L      EFP
Sbjct: 61  ESDSNGKFAVAAKTLLDALKEIPE--QPLTFEIKPDTYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    +     E+ + +L   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +  + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKLVRCKT-LAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLIGALRRVSIFSSQASSLIKLRMQENQIVVS 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   + E   V  Y    M I F   +L++I++NIS++EV+
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISAEEVI 340


>gi|307243425|ref|ZP_07525582.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM
           17678]
 gi|306493235|gb|EFM65231.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM
           17678]
          Length = 367

 Score =  138 bits (347), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 99/342 (28%), Positives = 179/342 (52%), Gaps = 8/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  +   + +A R I  K T+ +   +L+ A D  L+++    EI I   I A 
Sbjct: 1   MKILCNQKKLAHAITNAQRAINTKTTVEILRGILISAEDNKLKVRGYDNEISIETEIEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++ GSI +++ L+ +IVRKL D + IS   E +    V IS   S F ++     +FP+
Sbjct: 61  VELAGSIVINSKLIGEIVRKLPD-SYISI--ETDDNFNVFISCMSSRFKIKGISAEDFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     +++ + +KN++  T FA AT+      NG    I+ E + + A+  DG+R
Sbjct: 118 IDSIEVGDMLKISQADMKNMIRNTVFAAATDNSNQTFNGELIEIDSEKINMAAL--DGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA       + + K  S IVPR  +  +  +LS  D  + +++S   +    ++  +  R
Sbjct: 176 LATMTNPFKSGVDKNLSAIVPRNTLNHLNSLLSD-DGDLYIAISPRDVVFKFDNTRLVGR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           LIDGE+ +Y++++P     ++ V    L++AV+R S++ +S +   +K+++ +DKL +  
Sbjct: 235 LIDGEYADYKSLLPKEYVTKISVETKKLQEAVERASLLFTSDKNNTIKMTV-TDKLLVIT 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            N + G A E + V +    +DI FN +Y L+ I  ++S+ V
Sbjct: 294 SNNENGNAYEEIGVEFEGDMLDIAFNSRYFLDGIKYLNSEYV 335


>gi|237793322|ref|YP_002860874.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
 gi|229263029|gb|ACQ54062.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
          Length = 367

 Score =  137 bits (346), Expect = 2e-30,   Method: Compositional matrix adjust.
 Identities = 109/387 (28%), Positives = 198/387 (51%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A L  +I+RKL  D  +I+  ++N     + I   +S F L      EFP
Sbjct: 61  ILQEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +         F +  + LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+
Sbjct: 117 NPPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   ++V     + ++I P K + E+ +IL   + +V ++ + + I  +I    +  
Sbjct: 175 RLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF +Y+++IP   + ++      L  +++R S+M+       VK   S+DK+ +T
Sbjct: 233 RLLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E + V      + I FN KYLL+++  +      DDEVV    SS S   
Sbjct: 293 -SNSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+  + +         N  Y+++P+R+
Sbjct: 347 IKNTELN---------NCTYLVLPVRL 364


>gi|332971205|gb|EGK10168.1| DNA-directed DNA polymerase III beta subunit [Desmospora sp. 8437]
          Length = 378

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/397 (25%), Positives = 200/397 (50%), Gaps = 34/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  + R+ + E +    + +  K T+P+   +    ++  L +  S  ++ I   IP  
Sbjct: 1   MKFRICRTALTEAVSQVSKAVSTKTTVPILTGIHATVDEEGLWLTGSNSDLTIQVCIPLR 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-SNFYLQ 111
                  +VD  GS+ +   +  DIVRKL  G Q+ +  +    T +   H D ++F L+
Sbjct: 61  RDDKELVNVDTMGSVVLPGRIFSDIVRKLP-GDQVEWDVDERWKTTL---HSDQAHFELK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P     +    F L + +LK+++ +T FA++T E R  L G+ + +  E  +L
Sbjct: 117 GLDPEEYPRVPRFDEEQMFSLPAELLKSMIRQTGFAVSTSEARGVLTGVLWRL--ESGRL 174

Query: 172 CAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             VATD  RL+  E D+ V +   + ++++P K++ E+ +IL+ +   V V L++++I +
Sbjct: 175 TFVATDSIRLSRKEADVEVPEELTLENVVIPGKSLSELGKILADQTGWVDVILADNQIMV 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL+DG +P+   VIP S   E+RV+   + Q+VDR +++S   R   +K +
Sbjct: 235 RSDHLLFFSRLLDGTYPDTNRVIPKSGKTEIRVSTKEILQSVDRAALISRDGRDNVIKWT 294

Query: 290 LSSDKLCMTVDNP--DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +  +K  + V +   D+G  +E ++   +   + + FN +Y+++ +  + S     DE+ 
Sbjct: 295 V-KEKGVVQVQSAAQDVGSVLEEVDAQVDGEEVSLSFNAQYMMDALRAVDS-----DEIR 348

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             L  + +   I+  D++         +A ++++P+R
Sbjct: 349 ILLTGTMTPFLIQPADRE---------DALHLIVPIR 376


>gi|150005411|ref|YP_001300155.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482]
 gi|254884284|ref|ZP_05256994.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA]
 gi|294777189|ref|ZP_06742646.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510]
 gi|319640630|ref|ZP_07995347.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A]
 gi|149933835|gb|ABR40533.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482]
 gi|254837077|gb|EET17386.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA]
 gi|294449058|gb|EFG17601.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510]
 gi|317387751|gb|EFV68613.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A]
          Length = 374

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ ++  +
Sbjct: 1   MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  + + ++++ +  Q   F  N    E+ + + +  + L      E+P
Sbjct: 61  ESDGDGRFAVSSKTILEALKEIPE--QPLTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                        + + V+   + R+ FA A +E+R  +NGI+F I  ED+    VA+DG
Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     VA   +  + I+P+K    +  +L  +   V++   +      +E+ SM 
Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +  ++   L  A+ RVS+ SS     +KL LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMMLISALRRVSVFSSQASSLIKLRLSENQIQIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+ E++
Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQEIL 340


>gi|269797071|ref|YP_003310971.1| DNA polymerase III subunit beta [Veillonella parvula DSM 2008]
 gi|269093700|gb|ACZ23691.1| DNA polymerase III, beta subunit [Veillonella parvula DSM 2008]
          Length = 370

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 97/386 (25%), Positives = 185/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL  G  I  +K  E G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    INE ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++  +    ++   S   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N  V 
Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|254478910|ref|ZP_05092272.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM
           12653]
 gi|214035132|gb|EEB75844.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM
           12653]
          Length = 385

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 178/346 (51%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ +LE +  A R +  + T+P+   + + A   ++++  +  EI I   IPA 
Sbjct: 16  MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 75

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  G   V A +  D+V+KL +G  ++    +N     VN+  GD NF +      EFP
Sbjct: 76  IEEEGETVVPARIFSDLVKKLPEGEVEVKSDSQNT----VNVVSGDINFSIAGSNPEEFP 131

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E     SF+L  S+LK+L+++T F ++ E+ R  L G+ F +   +LK  AVA DG 
Sbjct: 132 EIPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGF 189

Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           R+A+    +E     + A+  S+++P   + EI RIL  +++ V +  + +++   I++ 
Sbjct: 190 RMAIYSYKSEKSFFDEEAEKYSLVIPGDTLDEISRILEDEETEVIIYHTSNQVLFQIDNT 249

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G F NY  V+P     E+ +N     ++++R S+++  +   VK  +  D  
Sbjct: 250 KVISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEI-GDSF 308

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +   + + G   E + V      ++I FN +YLL+ +  I  +EV
Sbjct: 309 IVISSSSEKGSMSEKLEVEVKGMLLEIAFNSRYLLDALKAIDEEEV 354


>gi|301060276|ref|ZP_07201142.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2]
 gi|300445619|gb|EFK09518.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2]
          Length = 371

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 204/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R ++L+ +     IIE+K+ +PV   +L  A++  + I A+  E+     I A 
Sbjct: 1   MEIKIDRDELLKSVSKVQSIIEKKSNMPVLSTILFTADNATVRISATDLELGFQETINAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSIT+S   +++I+++ +        KEN     + IS G + F L S P  EFP+
Sbjct: 61  ILEEGSITLSGRKIFEILKETRSSELHIKEKENNW---IFISDGVARFNLASIPPDEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF---FHINEEDLKLCAVATD 177
             E E V    +    L +++ +T +A+  EE  + L+G+      I+ ++L L  VATD
Sbjct: 118 FMEPEGVSMVSIEGETLVDMINKTIYAVTAEEAGFKLSGVLTEKLSIDGKNL-LRMVATD 176

Query: 178 GHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           GHRL++ +  ++ +  +     +++P+K + E L  +++   +V++   +        + 
Sbjct: 177 GHRLSLIDKPLENLETLELSAGVMIPKKGMSE-LNKMAADGGTVEIGFKDKNCVAKKGNA 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            + +RL++  FP+Y+ VI  +    + +    L  A+ ++ I+S+ R +AVK++L +D +
Sbjct: 236 FLVMRLLETNFPDYKAVIVKNEKDPVDIGKAVLMDAMRKMLILSNERYRAVKITLENDVM 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   NPD+G+A E++ + Y+   ++  FN K+ ++ + ++ S+ +        LD ++S
Sbjct: 296 DLVSTNPDLGEAQENLEIKYSGERVEAGFNPKFFIDTLQSMQSETI-------HLDFTDS 348

Query: 356 S-VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  F+   D D             ++MPMR+
Sbjct: 349 SKPFVLTGDMDE--------GFIGLIMPMRV 371


>gi|313902783|ref|ZP_07836180.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313466903|gb|EFR62420.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 370

 Score =  137 bits (345), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 194/389 (49%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+++SD+   L  A R +  + T+     +LL A    L + A+  E+ +    PA 
Sbjct: 1   MRLTIDQSDLHAALQVASRAVATRTTLAALSGILLVAEPEQLRLVATDLEMTVEALAPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +    L ++VR+L  G ++    E + G    +    S F L     + FP+
Sbjct: 61  VQEEGSVILPGRHLAELVRRLPPG-EVQL--EVDPGHRARLLQHRSRFTLHGMDPAAFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +    ++V+++++ RT  A++T+E R  L G+ F +  E  +L A+ATDG R
Sbjct: 118 LPRVGAGSTVLFDNAVMRHVLRRTTMAVSTDESRPILTGVSFRV--EGDRLEALATDGFR 175

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A + V +   +   P   ++P +++ E+ R+L  +    ++ L +++    +  + +  
Sbjct: 176 IAASRVTLERPVEGQPVDAVIPGRSLAEVARLLPDEGIG-RLILDDTQAGFQLGEVRLIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296
           RL++G +P   +++P      ++V     ++A +R +++S  R  A   ++L++   +L 
Sbjct: 235 RLLEGTYPRVLDLVPSQYPTRVQVPTRAFQEACERAALLSDTRQAARWLIRLTVEPGRLV 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  +P++G+A E +    +   M I FN +YL++ +  I S     DEV+F L     +
Sbjct: 295 VTASDPELGEAREEVPAQVDGEGMTIGFNARYLVDGLKAIDS-----DEVLFELTDPLKA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +RG   D         + FY+++P++I
Sbjct: 350 SRLRGVASD---------DFFYIVLPVKI 369


>gi|237710743|ref|ZP_04541224.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA]
 gi|229455465|gb|EEO61186.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA]
          Length = 374

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 171/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ ++  +
Sbjct: 1   MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLFLTASDSETTLSTSLEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  + + ++++ +  Q   F  N    E+ + + +  + L      E+P
Sbjct: 61  ESDGDGRFAVSSKTILEALKEIPE--QPLTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                        + + V+   + R+ FA A +E+R  +NGI+F I  ED+    VA+DG
Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     VA   +  + I+P+K    +  +L  +   V++   +      +E+ SM 
Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +  ++   L  A+ RVS+ SS     +KL LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+ E++
Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQEIL 340


>gi|27904524|ref|NP_777650.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31340042|sp|Q89B36|DPO3B_BUCBP RecName: Full=DNA polymerase III subunit beta
 gi|27903921|gb|AAO26755.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 371

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 187/346 (54%), Gaps = 13/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +    +++ L     +I R +  P+  ++LL A D  + + ++  ++EI   I   
Sbjct: 1   MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIII--- 57

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +DV     GSITVS   + +I + L     +   K   +  ++ I   ++ + L + P  
Sbjct: 58  LDVTLLEPGSITVSGKKILNICQNLPKDHNL---KIQYINNKLKIVSHNNQYLLATLPIK 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP+ K  E   +F ++ + LK+++  T+F+MA +++R +LNG+FF +  + L   AVAT
Sbjct: 115 NFPNLKISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVRNQHL--YAVAT 172

Query: 177 DGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           DG+R+A+ +  +      K  SII+PRK V E++++L+  +  + +++S +   +  ++L
Sbjct: 173 DGYRIAICKKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNL 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + ++I  +FP+Y ++I     K++ +N T  ++A+ RV+I+S+   + V +    +KL
Sbjct: 233 IFTSKIITEKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +T  N    +A E +++ Y    + +  N  Y+++I++ I   E+
Sbjct: 293 LITTSNQHDEEASEIIDIIYTNIKIKMSINASYMIDILNAIQDQEI 338


>gi|261415732|ref|YP_003249415.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372188|gb|ACX74933.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326015|gb|ADL25216.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 373

 Score =  137 bits (344), Expect = 3e-30,   Method: Compositional matrix adjust.
 Identities = 100/348 (28%), Positives = 186/348 (53%), Gaps = 14/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++++ + + L  A   +  K+TI +  +  L+     LE+ A+  ++ I   +   
Sbjct: 1   MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVEVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA--QISFFKENELGTEVNISHGD-SNFYLQSFPESE 117
            +  G++ ++A  L+D V+ L D +   I+F  ++ L   V I   +     +  F  ++
Sbjct: 61  GERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYL---VKIQWSERGKASIIGFDAND 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E E   +  +A+S L  L E+T FA +T+  R  LNG+F  +  +D K+  VATD
Sbjct: 118 FPPFPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVF--LEAKDGKISMVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           GHRL  A +D   + A++   +I+P KA+  IL  ++  DS+V+V  S + I  N  S+ 
Sbjct: 176 GHRLGRAAID--QEGAELSNGVIIPHKALQHILH-MAKGDSTVEVRTSATHILFNTGSIQ 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +L +G +P+Y++VIP   ++  + N T  +  +  V  M++ R + ++L    + L 
Sbjct: 233 VISKLYEGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILE 292

Query: 297 MTVDNPDMGK-AIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVV 342
           ++  +PD+G  + E++ + +N E    I FN ++L EI+    S+EV+
Sbjct: 293 LSATDPDVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKSEEVI 340


>gi|254977344|ref|ZP_05273816.1| DNA polymerase III subunit beta [Clostridium difficile QCD-66c26]
 gi|255094674|ref|ZP_05324152.1| DNA polymerase III subunit beta [Clostridium difficile CIP 107932]
 gi|255102901|ref|ZP_05331878.1| DNA polymerase III subunit beta [Clostridium difficile QCD-63q42]
 gi|255308721|ref|ZP_05352892.1| DNA polymerase III subunit beta [Clostridium difficile ATCC 43255]
 gi|255316428|ref|ZP_05358011.1| DNA polymerase III subunit beta [Clostridium difficile QCD-76w55]
 gi|255519088|ref|ZP_05386764.1| DNA polymerase III subunit beta [Clostridium difficile QCD-97b34]
 gi|255652271|ref|ZP_05399173.1| DNA polymerase III subunit beta [Clostridium difficile QCD-37x79]
 gi|255657640|ref|ZP_05403049.1| DNA polymerase III subunit beta [Clostridium difficile QCD-23m63]
 gi|296452679|ref|ZP_06894370.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP08]
 gi|296880068|ref|ZP_06904037.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP07]
 gi|296258461|gb|EFH05365.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP08]
 gi|296428935|gb|EFH14813.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP07]
 gi|328887503|emb|CAJ66816.2| DNA polymerase III subunit beta [Clostridium difficile]
          Length = 368

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 111/390 (28%), Positives = 196/390 (50%), Gaps = 31/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  +   +G A + I  K TI +   +L+   +G L++     EI I   + A 
Sbjct: 1   MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--DSNFYLQSFPESEF 118
           +   G + V A L  DI+RKL D      F E E  +E NI     +S F ++ +   EF
Sbjct: 61  IIEKGDVVVDARLFGDIIRKLPDS-----FVEIETDSENNIYINCVNSRFKIKGYAAKEF 115

Query: 119 PSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           P   E  EE +YS  +   +LKN++++T FA++ ++ +  L G    I + +L L  VA 
Sbjct: 116 PKLPELNEEDLYS--IPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAI 171

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG+RLAV     V  + +   +I+P K + ++  +LS +D +VKV  +E      I    
Sbjct: 172 DGYRLAVKSCS-VDSLTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTK 229

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
           +  RL++G+F +Y+ ++P  ++  +++N   L  +++R S++S S +   +KLS+  DK+
Sbjct: 230 IITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSI-RDKV 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
                N + G   E + +  +   +DI FN +Y +E + NI      ++E+     ++ +
Sbjct: 289 MAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVN 343

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I+  D          VN  Y+L+P+RI
Sbjct: 344 PCIIKPTD---------DVNYIYLLLPVRI 364


>gi|88697472|gb|ABD48430.1| DnaN [Morganella morganii]
 gi|88697488|gb|ABD48438.1| DnaN [Morganella morganii]
 gi|88697490|gb|ABD48439.1| DnaN [Morganella morganii subsp. sibonii]
          Length = 193

 Score =  137 bits (344), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 119/200 (59%), Gaps = 9/200 (4%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+  A+P       G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141
           DGAQIS     EL G  + +  G S F L + P S+FP+  + +   +F L+ + LK L+
Sbjct: 61  DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLSQATLKRLI 116

Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201
           E T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI  ++    S+IVP
Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPDH-SVIVP 173

Query: 202 RKAVGEILRILSSKDSSVKV 221
           RK V E++R+L   D+ +K+
Sbjct: 174 RKGVIELMRLLDGGDALLKL 193


>gi|331270705|ref|YP_004397197.1| DNA polymerase III subunit beta [Clostridium botulinum BKT015925]
 gi|329127255|gb|AEB77200.1| DNA polymerase III, beta subunit [Clostridium botulinum BKT015925]
          Length = 367

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 110/388 (28%), Positives = 189/388 (48%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + L A +  L +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNELTLIGSDIDLSIETKIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI V + +  +I+RKL + +      EN     + I    S F L      EFP+
Sbjct: 61  VQEEGSIVVDSKIFGEIIRKLPNSSIHINTTEN---NSIEIVCEKSKFDLIHMDAEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +   VLKN+++ T FA+A +E R  L GI F + ++ L L  VA DG+R
Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDKRLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    I  +     S ++P K   E+ +ILS  + +V ++ + + I  N+    +  R
Sbjct: 176 LALRSNLIDNE--NTISAVIPGKTFNEVSKILSEDEKNVNITFTPNHILFNLGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNC--TNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
           L++GEF  Y ++IP   + +L+VN     L   ++R S+M        VK  + +D L +
Sbjct: 234 LLEGEFIKYNSIIP--EEYKLKVNAKRAELLNCIERASLMGKDGNTNLVKFDIKNDNLVI 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T  N  +G+  E +N+      + I FN KYL++++  +      DDE+V   DSS S  
Sbjct: 292 T-SNSQLGRVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIVMEFDSSVSPC 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ K+ ++           Y+++P+R+
Sbjct: 346 VIKSKENNTYT---------YLVLPVRL 364


>gi|149370683|ref|ZP_01890372.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49]
 gi|149356234|gb|EDM44791.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49]
          Length = 372

 Score =  136 bits (343), Expect = 4e-30,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 173/342 (50%), Gaps = 7/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     II   NT+P+  + L + +   L++ AS  E  +T  +   
Sbjct: 1   MKFIVSSSYLLKKLQVLGGIINNNNTLPILDNFLFELHGNSLKVSASDLESTVTSMLDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ + A LL D ++   +   ++F  E     E++ +HG   + L     +EFPS
Sbjct: 61  SNEVGNVCIPARLLLDTLKTFPE-QPLTFTLEENNTVEISSNHG--KYALAYADGAEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +   S  +   +L   + +T FA   +++R  ++G+FF  N + L    VATD H+
Sbjct: 118 AVELKDPSSTIIQGDILATAISKTIFASGNDDLRPVMSGVFFQFNTDGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     + V + A+    I+P+K +  +  IL+  +  V V  ++S    + +   +  R
Sbjct: 176 LVKYTREDV-KAAETAEFIMPKKPLNLLKSILAGSEDEVVVEYNDSNAKFSFDGTELICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++      +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSISRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + D   KA E +   Y    M I FN ++L E+++N++ D+V
Sbjct: 295 DVDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLTCDDV 336


>gi|269926108|ref|YP_003322731.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789768|gb|ACZ41909.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 376

 Score =  136 bits (343), Expect = 5e-30,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 190/393 (48%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + ++   L    R +  + T+P+  ++LL    G L+++A+  E+ IT  + A 
Sbjct: 1   MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWVGAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G  TV A L  + +  L +  +    + NE G +++++ G S   +      +FP+
Sbjct: 61  IEREGVTTVPARLFTEFISSLPN--EKVLLELNE-GHKLHVAAGHSAADIHGMDPEDFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + + VLK ++E+  FA AT++ R  L G+ F I+ + L L A   DG R
Sbjct: 118 VPSASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGDKLTLAAA--DGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMS 238
           L+V E  I +  A+  ++IVP KA+  + R++   +  V+++++  +S+I    E++++ 
Sbjct: 176 LSVKEQSINSS-AESVNVIVPAKALDALSRLIGDHEEQVEITINPNKSQIVFQAENINVI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------S 292
            RLIDG FPNY  +IP        V+    R+A+ R  I       AVKL++S      +
Sbjct: 235 SRLIDGNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDT 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            K+ ++    ++G   +S+          I FN +YL +++  I S     D+V     S
Sbjct: 295 GKIVVSATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIES-----DQVALETQS 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            NS   IR     S           +V+MPM +
Sbjct: 350 PNSPGVIRPVGNGSYT---------HVIMPMHL 373


>gi|163784003|ref|ZP_02178965.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880725|gb|EDP74267.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 365

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 101/391 (25%), Positives = 198/391 (50%), Gaps = 33/391 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T++++ + ++L  A    E+K+ +P+  + LL+A DG L ++ +  E+ +  ++ A 
Sbjct: 1   MELTIDKTTLQDVLRKAISATEKKSALPILSNFLLEAKDGKLIVEGTDLEVHVKISVFAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V+A  L DI R L   ++    K ++  + + I  G + + L +    ++P 
Sbjct: 61  VEEEGKACVNAKKLTDIARLLP--SETVHIKTDD--SSLKIKSGKTKYSLPTVAPEDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF-----HINEEDLKLCAVA 175
                   +F ++ + L+N + +T +A + EE RY L G  F     HI+        VA
Sbjct: 117 MYPFPEDTAFLISGADLQNAINKTLYAASKEESRYALQGDLFKSRNNHID-------VVA 169

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA+  ++   Q+     +++P+K++ E+ ++L+  +  V+++ +E       +  
Sbjct: 170 TDGHRLALYIIEREGQLDTNVEVVIPQKSLNELRKLLTGAED-VEMAATEQYAFFKTKEW 228

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G FP+Y  VIP     E+ ++     +AV RVS +     + +K +L  + L
Sbjct: 229 ILMTRLLEGAFPDYTQVIPDEFSIEIILDKKETLEAVKRVSAVVEGDTKPIKFTLKPNVL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF-RLDSSN 354
            +   + + G+A++ + V Y      I FN KY++E I      EVVDD+  + +  + N
Sbjct: 289 ELRSFSQEYGEAVDEIEVQYEGEEFTIGFNAKYIIEAI------EVVDDDKFYMKFTNPN 342

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   +   +       +N+  A  ++MPM I
Sbjct: 343 SQTMVEPIE-------NNRYKA--IIMPMDI 364


>gi|88697474|gb|ABD48431.1| DnaN [Morganella morganii]
 gi|88697480|gb|ABD48434.1| DnaN [Morganella morganii]
 gi|88697482|gb|ABD48435.1| DnaN [Morganella morganii]
 gi|88697484|gb|ABD48436.1| DnaN [Morganella morganii]
 gi|88697486|gb|ABD48437.1| DnaN [Morganella morganii subsp. morganii]
 gi|88697508|gb|ABD48448.1| DnaN [Morganella morganii]
          Length = 193

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 78/200 (39%), Positives = 118/200 (59%), Gaps = 9/200 (4%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+  A+P       G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141
           DGAQIS     EL G  + +  G S F L + P S+FP+  + +   +F L  + LK L+
Sbjct: 61  DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLI 116

Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201
           E T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI  ++    S+IVP
Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPDH-SVIVP 173

Query: 202 RKAVGEILRILSSKDSSVKV 221
           RK V E++R+L   D+ +K+
Sbjct: 174 RKGVIELMRLLDGGDALLKL 193


>gi|325298420|ref|YP_004258337.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
 gi|324317973|gb|ADY35864.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
          Length = 374

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 95/345 (27%), Positives = 177/345 (51%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  +++   L    R+I  KN++P+    LL+ +DG L + +S  E  ++ +I  +
Sbjct: 1   MKFIVSSTNLFNHLQAISRVINSKNSLPILDCFLLELHDGTLSMTSSDNETTLSTSIEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  L + ++++ +  Q   F+ N    E+ + + +  + L     +E+P
Sbjct: 61  EFDGDGRFAVSSRTLLEALKEIPE--QPLAFQVNLDTLEITVQYQNGQYNLMGQNANEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             ++         + + +L + V R  FA A +E+R  +NGI+F I  ED+ L  VA+DG
Sbjct: 119 QPQDLGANAVRLTMPAEILMSGVNRCIFATADDELRPVMNGIYFDITPEDITL--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V      A   +  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 177 HKL-VRNKTYAAHGTEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +  ++  +L  A+ RVS+ SS     +KL+LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAILDRASLISALRRVSVFSSQASSLIKLNLSDNQIKIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y+  PM I F   +L++I++NI +  V 
Sbjct: 296 AQDIDFSTSAEETVICQYDGNPMSIGFKSSFLIDILNNIPAANVT 340


>gi|297184135|gb|ADI20254.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 373

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 166/343 (48%), Gaps = 8/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     II+  NT+P+  + L +   G L + AS  E  ++  +   
Sbjct: 1   MKFIVSSSKLLKQLQLIGGIIQSNNTLPILDNFLFELKQGELTVSASDLETMMSVNLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+  V A  L D ++   +      F E     E+   +G   + L      EFP 
Sbjct: 61  SEDHGAAAVPAKTLLDTLKTFPEQPLTFTFDEGAHSIELASDYG--KYSLAYIDGEEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   +  L +  L   + +T FA   +E+R  ++G+FF    E   L  VATD H+
Sbjct: 119 FPELEDASTANLPAEALVTGITKTLFATGNDELRPVMSGVFFQF--ESNSLTFVATDAHK 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+ A  A     I+P+K +  +   LS   S V+V  + +      +++ +  
Sbjct: 177 LVRYRRTDLGA--ADTAEFIMPKKPLNMLRGSLSYDSSEVEVVYNNTNARFTFDNVVLVC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP SN   + ++ +    +V RV+I S+     ++L L+  ++ ++ 
Sbjct: 235 RLIDGKYPNYEAVIPQSNPNVMLIDRSAFSSSVKRVAIFSNKTTHQIRLKLAGAEISVSA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++PD   KA E ++  Y    M+I FN ++LLE++ N+ SD V
Sbjct: 295 EDPDFSNKAHERISCDYQGDDMEIGFNSRFLLEMLSNLGSDNV 337


>gi|168183728|ref|ZP_02618392.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
 gi|182673196|gb|EDT85157.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
          Length = 367

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 110/389 (28%), Positives = 200/389 (51%), Gaps = 29/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I     A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKAKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   G+I + A L  +I+RKL  D  +I+  ++N     + I   +S F L      EFP
Sbjct: 61  ILQEGTIVLDARLFGEIIRKLPNDLIEINTLEDNS----IEIICQNSRFNLIYMNPDEFP 116

Query: 120 STK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +     E  ++S +   + LKN+++ T FA A +E R  L G+ F I ++ L L  VA D
Sbjct: 117 NPPIINENMIFSID--ENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G+RLA+   ++V     + ++I P K + E+ +IL   + +V ++ + + I  +I    +
Sbjct: 173 GYRLALRS-EVVDNDNTINAVI-PGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKI 230

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLC 296
             RL++GEF +Y+++IP   + ++      L  +++R S+M+       VK   S+DK+ 
Sbjct: 231 ISRLLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIV 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  N  +G   E + V      + I FN KYLL+++  +      DDEVV    SS S 
Sbjct: 291 IT-SNSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSP 344

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+  + +         N  Y+++P+R+
Sbjct: 345 CIIKNTELN---------NCTYLVLPVRL 364


>gi|242243254|ref|ZP_04797699.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144]
 gi|242233203|gb|EES35515.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144]
 gi|319399913|gb|EFV88159.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           FRI909]
 gi|329735734|gb|EGG72015.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU028]
          Length = 377

 Score =  136 bits (342), Expect = 6e-30,   Method: Compositional matrix adjust.
 Identities = 99/376 (26%), Positives = 190/376 (50%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T   I+ G S F L  
Sbjct: 62  VDGEEIVEITETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  + ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +N    E   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 352 -GTMKPFILKPKDDDS 366


>gi|284109083|ref|ZP_06386475.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829830|gb|EFC34123.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 281

 Score =  136 bits (342), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 83/273 (30%), Positives = 138/273 (50%), Gaps = 15/273 (5%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           V I  G   F +   P  +FP     E      L    L  L+ +T FA+   + RY LN
Sbjct: 3   VTIKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLN 62

Query: 159 GIFFHINEED----LKLCAVATDGHRLAVAE----VDIVAQIAKMPSIIVPRKAVGEILR 210
           G+   +  E     ++L  V TDGHRLA+AE     D  A + +   +IVP+KA  EI R
Sbjct: 63  GLLIVVTTEGESPMIRL--VGTDGHRLAMAEQKLETDAKAPVEQEQKVIVPKKAAAEIRR 120

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           +L        +  +++ +      L ++ RL++G +PNYQ V+P +++K++  N  +L  
Sbjct: 121 LLEEGGDEPMIGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEG 180

Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330
           A+ RVS++S  +  AVKL+ S   + +   +PDMG+A + +   +        FN +YLL
Sbjct: 181 ALRRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLL 240

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
           +++  + S     + VV  +++S S   IR +D
Sbjct: 241 DVLGVMES-----ETVVLNMEASLSPCLIREED 268


>gi|237756531|ref|ZP_04585058.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691305|gb|EEP60386.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 362

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 108/385 (28%), Positives = 192/385 (49%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + D+ E       I E+K  +P+  + LL+A DG L +  +  E+  +  IPA 
Sbjct: 1   MKLKAYKKDLQEAFKKV--ISEKKAALPILTNFLLKAEDGKLTVYGTDLEVYTSYTIPAD 58

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ V++  + DI + L     + +      G  + I+ G + + L +F   +FP 
Sbjct: 59  VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +      +  ++   L   + +T +A++ +E R+ LNG+ F   +   KL  VATDGHR
Sbjct: 115 PESYPSDLAILISGQELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +       IVP+KA+ EI +++S  +  V+V++S S I     +  +S R
Sbjct: 173 LALYSTEITGK-GLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYILSAR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FPNY  VIP S + E+ ++ + L  ++ RV I      + +KL L  +KL ++  
Sbjct: 231 LLEGVFPNYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENDNKPIKLKLFDNKLIISTP 290

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
                 A + + V Y+    +I FN KY+L+ +     DE+ D  +V +  + +S   I 
Sbjct: 291 PTSDAYAEDEIEVNYDGEEFEIGFNGKYILDAV-----DEIEDKNIVVKFINKDSQTVII 345

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++ + +           V+MPM I
Sbjct: 346 PENPEER--------YLAVVMPMTI 362


>gi|71899734|ref|ZP_00681886.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730529|gb|EAO32608.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 218

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 75/209 (35%), Positives = 123/209 (58%), Gaps = 2/209 (0%)

Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192
           A  +LK L+ERT FAMA +++RYYLNG+   +   D KL  VATDGHRLA+ E ++    
Sbjct: 1   AEVLLKELIERTAFAMAQQDVRYYLNGLLLDLR--DTKLRCVATDGHRLALCETELEQAK 58

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
                II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ V
Sbjct: 59  DLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGV 118

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312
           IP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   NP+  +A E + 
Sbjct: 119 IPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAHNPEQEEAQEEIE 178

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEV 341
                  + I FN  YLL+ + ++  D V
Sbjct: 179 AQTIVDGLAIGFNVNYLLDALSSLRGDFV 207


>gi|158319061|ref|YP_001511568.1| DNA polymerase III subunit beta [Alkaliphilus oremlandii OhILAs]
 gi|158139260|gb|ABW17572.1| DNA polymerase III, beta subunit [Alkaliphilus oremlandii OhILAs]
          Length = 368

 Score =  135 bits (341), Expect = 7e-30,   Method: Compositional matrix adjust.
 Identities = 107/379 (28%), Positives = 196/379 (51%), Gaps = 30/379 (7%)

Query: 14  LGHACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69
           L H+  I+++    K+T+P+   + L+A +  L +  +  EI I   + A++   GSI V
Sbjct: 10  LMHSISIVQKAVSSKSTLPIIKGIYLEAYEDHLRLVGTDMEIGIDHVMEANIIEEGSIVV 69

Query: 70  SAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
            A L  +I+R+L D   ++S  + N+L     I    + F + S+  SEFP   E E   
Sbjct: 70  DARLFSEIIRRLPDYEVEVSLQENNQLL----IKCAATEFNILSYNASEFPELPEIEEDQ 125

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
             E++  + KN++ +T FA A +E R  L G+   I  ED  L  VA DG+R+A+ +  +
Sbjct: 126 IHEISQDLFKNMIRQTVFATAQDETRPILTGVLMEI--EDDILSMVALDGYRVALRKGKL 183

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
            A +     +++P K + E+ RI++ + D ++K+SL+ +     + +  +  RL++GEF 
Sbjct: 184 NAHLNN--RVVIPGKTLNEVNRIMTGEEDENIKISLTNNHALFTVGNTKLISRLLEGEFM 241

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMGK 306
           NY  +IP      ++VN  +L  +++R S++    R   VK S++  K+ +   N ++G 
Sbjct: 242 NYNQIIPKEFKSRVKVNTRSLLDSIERASLLGKEGRNNLVKFSITDYKMVIN-SNSELGN 300

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
             E + +      + I FN KY ++ +      +V+DDE V+   ++N S    G  K  
Sbjct: 301 VHEEILIELEGDDLQIAFNSKYFIDAL------KVIDDESVYLEFTTNLS---PGIIKPI 351

Query: 367 KNNKDNKVNAFYVLMPMRI 385
            N+     N  Y+++P+R+
Sbjct: 352 TND-----NTIYLVLPVRL 365


>gi|188996889|ref|YP_001931140.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931956|gb|ACD66586.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 362

 Score =  135 bits (341), Expect = 8e-30,   Method: Compositional matrix adjust.
 Identities = 100/342 (29%), Positives = 175/342 (51%), Gaps = 10/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + D+ E       I E+K  +P+  + LL+A DG L +  +  E+  +  IPA 
Sbjct: 1   MKLKAYKKDLQEAFKKV--ISEKKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIPAD 58

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ V++  + DI + L     + +      G  + I+ G + + L +F   +FP 
Sbjct: 59  VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +      +  ++   L   + +T +A++ +E R+ LNG+ F   +   KL  VATDGHR
Sbjct: 115 PEAFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +       IVP+KA+ EI +++S  +  V+V++S S I     +  +S R
Sbjct: 173 LALYSTEITGK-GLEGKYIVPQKALNEIKKLVSDVED-VEVAVSGSSIFFKGSNYVLSAR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FP+Y  VIP S + E+ ++ + L  ++ RV I      + +KL L  +KL ++  
Sbjct: 231 LLEGVFPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTP 290

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
                 A + + V Y+    +I FN KY+LE +D I    +V
Sbjct: 291 PTSDTYAEDEIEVNYDGEEFEIGFNGKYILEAVDEIEDKNIV 332


>gi|307717719|ref|YP_003873251.1| DNA polymerase III subunit beta [Spirochaeta thermophila DSM 6192]
 gi|306531444|gb|ADN00978.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6192]
          Length = 367

 Score =  135 bits (341), Expect = 9e-30,   Method: Compositional matrix adjust.
 Identities = 105/385 (27%), Positives = 181/385 (47%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T ER ++++ +  A  II  KN + +  +VLL A D  L I+A+  ++    + P  
Sbjct: 1   MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSRLTIRATDLKVGFETSSPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV    L  I+R L  GA + F  +      +       NF L++    ++P 
Sbjct: 61  VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                  Y F +  S L  ++  T FA++ +E RY++NG+F    E+ L +  VATDG R
Sbjct: 120 MPLHGDSY-FSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E  +   +     +I+P K +  + R L   +  V V++ E  + L    + +S  
Sbjct: 177 LAYIEKGVDGGVPDFNGVIIPPKIL-HLARKLLPGEGMVDVAIGEKHVFLRYGDVYLSSN 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G FP Y+ VIP        +      +A+ RVS++   + + V L++    L ++ +
Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVSSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E +   Y +  + I  NY YLLE +  ++ ++V   E+ F   S   +V   
Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVMTEEQV---EIAFTEPSRAITV--- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +   F+++MPM++
Sbjct: 350 --------RPVPEREFFHIVMPMQL 366


>gi|94264232|ref|ZP_01288027.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|94266206|ref|ZP_01289915.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93453213|gb|EAT03671.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93455343|gb|EAT05547.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 376

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 107/389 (27%), Positives = 196/389 (50%), Gaps = 27/389 (6%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V R + L  L     I  +K T+ V  ++LL+A +  L +  +  E+ +   +PA V   
Sbjct: 7   VPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVPAEVTSP 66

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G IT+ A  L+++VR+ Q   QI   +++   T V I+ G+S+  L      EFP+    
Sbjct: 67  GEITLPARKLFELVREAQ-ADQIEIAEQDN--TRVKINAGNSDCRLAGMAADEFPAFPPH 123

Query: 125 EYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFF--HINEEDLKLCAVATDGHRL 181
           +      + + V++ L+++T +A+A E E  + L G+     I E+   L  V++DGHRL
Sbjct: 124 QDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDGHRL 183

Query: 182 AVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           A+ E  + A +  +     I+VPRK + E+ R L      + +++ E ++ +     +M 
Sbjct: 184 AMMESKVEADLGPLAMDRVILVPRKGMQEV-RKLCESGGQIALAIEEKQLVVKAGEYTMV 242

Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
            RL+ G+FP+Y+++I     +  + +N  +L  ++ RV+I +  R  AV   + + ++ +
Sbjct: 243 ARLMSGDFPDYKSIIQVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENSRMTL 302

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSS 356
           +  N D G A E + + Y    M + FN KY  E +      +V+D E+V   +++ +S 
Sbjct: 303 SSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEAL------QVMDSEMVKAYINAEDSP 356

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++G DKD             V+MPM+I
Sbjct: 357 CLLQG-DKDP--------GYLSVIMPMKI 376


>gi|300781939|ref|YP_003762230.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
 gi|299791453|gb|ADJ41828.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
          Length = 377

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/393 (26%), Positives = 184/393 (46%), Gaps = 26/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DG---LLEIKASGPEIEITGA 56
           MKI VER  + + +    R +  +  +PV   VLL A  DG    L +     E+  T  
Sbjct: 1   MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGSDGETDALTVSGFDYEVSATVG 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +PA++   G + VS  LL DI + L   AQ      +  G    I+ G + F L + P  
Sbjct: 61  VPATIADGGRLLVSGRLLADITKALP--AQPVEISVD--GARATITCGTARFSLPTMPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P    +   ++ ELA       V +   A   ++    L G+   I+   L L  VAT
Sbjct: 117 DYPQLPSQP-AFAGELAGDAFGQAVTQVVVAAGKDDTLPMLTGMRLEISGSSLTL--VAT 173

Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIE 233
           D  RLA+ E     A+     +++VP + + E  + L +  ++++++L+  E  + L+  
Sbjct: 174 DRFRLAMREFTWQPAEGLADAAVLVPARTLAEAAKTLGASGATIRLALASGEGLLGLSGS 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP Y+ ++P S+     ++ + L +++ RVS+++    Q V+L    +
Sbjct: 234 GRYTTTRLLDAEFPPYRQLLPASHSSRAVIDVSALTESIKRVSLVAERGTQ-VRLEFGDN 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D G A E + V Y   P+ I FN  YL++ +  + SD     E+ F   + 
Sbjct: 293 TLRLSAGGDDEGSAEEELQVEYEGEPVTIAFNPGYLVDGLGALHSDRA---ELTF--TTP 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
           N    I+  D +      N V  + Y+LMP+R+
Sbjct: 348 NRPALIKPADAEG-----NVVPGYLYLLMPVRL 375


>gi|330444456|ref|YP_004377442.1| DNA polymerase III subunit beta [Chlamydophila pecorum E58]
 gi|328807566|gb|AEB41739.1| DNA polymerase III, beta subunit [Chlamydophila pecorum E58]
          Length = 367

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 192/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++++  L+     ++ +   IPV  HVL++ N+  L   A+   +       A 
Sbjct: 1   MKFAISKNELGSLIKKIQSVVPQNTPIPVLSHVLMETNNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G++++ +   + ++++L ++  +IS       G    I+ G S F L S  + +FP
Sbjct: 61  VYEKGAVSIPSKRFFQLIKELTENNIEISAIA----GEMAQITSGSSCFRLLSMGKQDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK++++RT FA++ EE RY L G+   I      +  V TDG 
Sbjct: 117 MLPDMQNAVRFTLPTEQLKDMLQRTSFAVSREESRYVLTGVLLSITNGIATI--VGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + ++    + +   I+P KAV EI+++ SS+D+   + L + +I +  ++  +  
Sbjct: 175 RLAKIDAEVSLDKSFVGDYIIPIKAVEEIIKLCSSEDTETTIFLDQDKIAVESDNTLLIT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   +  +  ++   L   + +V++ ++    +VK + +  +L +T 
Sbjct: 235 KLLSGEFPDFTPVISTQSSVQFDLHREELIALLKQVALFTNENSHSVKFTFTPGELTLTA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V   +    DS N  +  
Sbjct: 295 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +   + +V+MPMR+
Sbjct: 351 ------------DSTRSLFVIMPMRL 364


>gi|294792396|ref|ZP_06757543.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27]
 gi|294456295|gb|EFG24658.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27]
          Length = 370

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 186/386 (48%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL  G  I  +K  E G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + +  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDNFAMKELIDLTNYAAATDEDRPIFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++  +    ++   S + + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSENNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E ++V +   P  I FN +Y+ +I+ + + D       +      N  V 
Sbjct: 297 TQNTEIGMAKEDVSVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|297205284|ref|ZP_06922680.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           jensenii JV-V16]
 gi|297149862|gb|EFH30159.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           jensenii JV-V16]
          Length = 386

 Score =  135 bits (340), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 174/344 (50%), Gaps = 27/344 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  L+ L +  R I  + TIP+   + +  ++  L +  S  +I I   IP S
Sbjct: 11  MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 70

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  E + G +  IS  +S F +     +
Sbjct: 71  ADLTVESTGSIVLPARFFNEIIKKLP-GKDFSF--EVKEGLQTQISSENSEFTINGLDAN 127

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +FE++    + ++  T+FA++T+E R  L G+ F  N+  +K  AVAT
Sbjct: 128 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIK--AVAT 185

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +D+         +I+P K++ E+ RI+  +D  V V+  ++++   I ++S
Sbjct: 186 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 245

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL++G +P+   ++P ++      +  +L QA+DRVS+++   R   VKL+L ++  
Sbjct: 246 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 305

Query: 296 CMTV--DNPDMG--------KAIESMNVYYNECPMDICFNYKYL 329
              +  D+P++G        K I   N       ++I FN  YL
Sbjct: 306 VAQLEGDSPEIGTVEEKPWAKQITGQN-------LEISFNPDYL 342


>gi|289577267|ref|YP_003475894.1| DNA polymerase III subunit beta [Thermoanaerobacter italicus Ab9]
 gi|289526980|gb|ADD01332.1| DNA polymerase III, beta subunit [Thermoanaerobacter italicus Ab9]
          Length = 370

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 94/346 (27%), Positives = 177/346 (51%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A    ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKDQVKFSGTDLDIGIECQIPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G I V A +  ++VRKL +G  +I    E++    VN+     NF +      EFP
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEGDVKI----ESDSQNTVNVICDSINFTIAGSDAVEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     SF+L  ++LK+L+++T F +A E+ R  L G+ F +   ++K  AVA DG 
Sbjct: 117 EIPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGF 174

Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           R+A+    +E     +  +  SI++P K + EI +IL  +++ + +  + +++   IE+ 
Sbjct: 175 RMAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +  DK 
Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                N + GK +E + V      ++I FN +YLL+ +  I  +E+
Sbjct: 294 ITVSSNSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAIDEEEI 339


>gi|295425826|ref|ZP_06818507.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064519|gb|EFG55446.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 376

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 99/350 (28%), Positives = 176/350 (50%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L  ++  L +  S  +I I   IP S
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLSEDQLVLTGSDTDISIEIKIPVS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  E +   +  IS  +S F +     +
Sbjct: 61  EDLSVESTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKISSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF +A  +L+ ++  T FA+AT+E R  L+G+ F  + + +K  AVAT
Sbjct: 118 NYPRLPEIPEESSFTIAGKILREIINETQFAVATQESRLVLSGVHFTFSPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   ++++   I +++
Sbjct: 176 DSHRLSERTIALENGPQTKTDLIIPGKSLQELSRIIGEADPEVKVCPGDNQVLCRIGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD-- 293
              RL+DG +P+   ++P  +   +  +  +L  A+DR S+++   R   V L+L ++  
Sbjct: 236 FYSRLLDGNYPDTDRLLPTESTTSVEFDLADLSSALDRASLLTHAGRNNVVNLNLDTENG 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           K+ +T  + ++G   E +N    +   + I FN  YL + +    +D +V
Sbjct: 296 KVKLTGTSAEIGNVEEDVNFKNLDGKNLTISFNPDYLRDALRASVTDAIV 345


>gi|242372601|ref|ZP_04818175.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           M23864:W1]
 gi|242349656|gb|EES41257.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           M23864:W1]
          Length = 377

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 188/376 (50%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  IDGEDIVDISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQL-EDASENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGENNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +N    E   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 352 -GTMKPFILKPKDDDS 366


>gi|126697568|ref|YP_001086465.1| DNA polymerase III subunit beta [Clostridium difficile 630]
 gi|260681771|ref|YP_003213056.1| DNA polymerase III subunit beta [Clostridium difficile CD196]
 gi|260207934|emb|CBA60043.1| DNA polymerase III, beta chain [Clostridium difficile CD196]
          Length = 402

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 31/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +KI   +  +   +G A + I  K TI +   +L+   +G L++     EI I   + A 
Sbjct: 35  LKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAE 94

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--DSNFYLQSFPESEF 118
           +   G + V A L  DI+RKL D      F E E  +E NI     +S F ++ +   EF
Sbjct: 95  IIEKGDVVVDARLFGDIIRKLPDS-----FVEIETDSENNIYINCVNSRFKIKGYAAKEF 149

Query: 119 PSTKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           P   E  EE +YS  +   +LKN++++T FA++ ++ +  L G    I + +L L  VA 
Sbjct: 150 PKLPELNEEDLYS--IPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAI 205

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG+RLAV     V  + +   +I+P K + ++  +LS +D +VKV  +E      I    
Sbjct: 206 DGYRLAVKSCS-VDSLTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTK 263

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
           +  RL++G+F +Y+ ++P  ++  +++N   L  +++R S++S S +   +KLS+  DK+
Sbjct: 264 IITRLLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSI-RDKV 322

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
                N + G   E + +  +   +DI FN +Y +E + NI      ++E+     ++ +
Sbjct: 323 MAITSNTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVN 377

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I+  D          VN  Y+L+P+RI
Sbjct: 378 PCIIKPTD---------DVNYIYLLLPVRI 398


>gi|52078493|ref|YP_077284.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580]
 gi|52783857|ref|YP_089686.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580]
 gi|319648519|ref|ZP_08002735.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2]
 gi|52001704|gb|AAU21646.1| DNA polymerase III (beta subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52346359|gb|AAU38993.1| DnaN [Bacillus licheniformis ATCC 14580]
 gi|317389598|gb|EFV70409.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2]
          Length = 378

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 189/352 (53%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  + +  S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL   + +    +N+  T   I  G + F L  
Sbjct: 61  DGDLEIVTIEQPGSIVLQARFFSEIVKKLP-MSTVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              SE+P   + E  ++F++ + +LKNL+ +T FA++T E R  L G+ +++   +L +C
Sbjct: 118 LDASEYPLLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWNVTGGEL-IC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 177 T-ATDSHRLALRKAKLDINEDSSYNVVIPGKSLTELSKILDDHQELVDIVITETQVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +++    RL+DG +P+   +IP  +   L VN     QA+DR S+++   R   VKLS +
Sbjct: 236 KNVLFFSRLLDGNYPDTNRLIPQESKTNLIVNTKEFLQAIDRASLLAREGRNNVVKLSAA 295

Query: 292 SDK-LCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           +++ + ++ ++P++GK +E++N    E   + I F+ KY+L+ +  +  +++
Sbjct: 296 ANESIEISSNSPEIGKVVETVNAEQIEGEDLKISFSPKYMLDALKVLEGEDI 347


>gi|256851675|ref|ZP_05557063.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661608|ref|ZP_05862520.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934241|ref|ZP_06339518.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
 gi|256615633|gb|EEU20822.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547665|gb|EEX23643.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301715|gb|EFA93982.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
          Length = 376

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 98/344 (28%), Positives = 174/344 (50%), Gaps = 27/344 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  L+ L +  R I  + TIP+   + +  ++  L +  S  +I I   IP S
Sbjct: 1   MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  E + G +  IS  +S F +     +
Sbjct: 61  ADLTVESTGSIVLPARFFNEIIKKLP-GKDFSF--EVKEGLQTQISSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +FE++    + ++  T+FA++T+E R  L G+ F  N+  +K  AVAT
Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +D+         +I+P K++ E+ RI+  +D  V V+  ++++   I ++S
Sbjct: 176 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL++G +P+   ++P ++      +  +L QA+DRVS+++   R   VKL+L ++  
Sbjct: 236 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 295

Query: 296 CMTV--DNPDMG--------KAIESMNVYYNECPMDICFNYKYL 329
              +  D+P++G        K I   N       ++I FN  YL
Sbjct: 296 VAQLEGDSPEIGTVEEKPWAKQITGQN-------LEISFNPDYL 332


>gi|146329375|ref|YP_001208942.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A]
 gi|146232845|gb|ABQ13823.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A]
          Length = 414

 Score =  135 bits (339), Expect = 1e-29,   Method: Compositional matrix adjust.
 Identities = 106/431 (24%), Positives = 192/431 (44%), Gaps = 63/431 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + +  + + L     I++RK T+ +  H+ L+  +  L +  +  EI +   IP  
Sbjct: 1   MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G+IT+     Y  ++++ DG  I+    N+   + +I  G +   L + P  +FP
Sbjct: 61  NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQ---QFHIHAGKTIVKLATLPAKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  Y++   L +S+  NL+ +  +A+A ++ R YLNG+  +I ++   L AV+TDGH
Sbjct: 118 IPLDNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----------------SKDSSVKVS- 222
           RLA A++     IA     IVP KAV E+++ LS                S D + +++ 
Sbjct: 178 RLACAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNE 237

Query: 223 ---------------------------LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
                                       SE  + L I S   S RLIDG++P Y+ VIP 
Sbjct: 238 QIDILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPL 297

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY- 314
             +  + +    L  A+ R  ++ + R   V+L      L +T  N +     ES+ +  
Sbjct: 298 QQENPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIIN 357

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
                ++I  N  YL++++ ++       + V   L++   +  +  KD+          
Sbjct: 358 SGNLTLEIGLNVNYLIDVLMHLEG-----ETVQLHLENGEQACLLMSKDEP--------- 403

Query: 375 NAFYVLMPMRI 385
           +  +V+MPMRI
Sbjct: 404 DVRHVIMPMRI 414


>gi|22299892|ref|NP_683139.1| DNA polymerase III subunit beta [Thermosynechococcus elongatus
           BP-1]
 gi|22296077|dbj|BAC09901.1| DNA polymerase III beta subunit [Thermosynechococcus elongatus
           BP-1]
          Length = 370

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 183/344 (53%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S +   L    R+     + P+  ++LLQA  G L +      + +   + A+
Sbjct: 1   MKVVCSQSVLSSKLAPLSRVAPSNPSHPILANILLQAEGGRLGLSVFDLSLGMQIWLDAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G+ITVSA L  ++V ++ +   I    E+   T V + +G   F +Q     EFP+
Sbjct: 61  VKVPGAITVSAKLFSEMVSRMPN-RDIEITAED---TRVILDYGSGFFEIQGMSAEEFPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E V    L +  L+  ++ + FA +T+E +  L+G+  H+  E  +L   ATDGHR
Sbjct: 117 LPTLEDVTPITLTAEALRRGLQGSLFAASTDENKQILSGL--HVTFERDRLEFAATDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-LSMSV 239
           LAV   +       +  I +P K++ ++ R+++ +D  V +    +++  +I +   ++ 
Sbjct: 175 LAVTVTEQPVPAEPLSPITIPAKSLKDLERLMAKQDGMVALRCDPTQVVFDIGNDARITS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLCM 297
           RL++G++PNY+ +IP +  +++ V  + L  A++RV+I+++ +   VK+++ ++  +L +
Sbjct: 235 RLLEGQYPNYRQLIPKTFARQVTVERSALADALERVAILAAQKNNVVKINIDTEAQELKL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + + P +G   E++    +   M + FN KYLLE +  ++S +V
Sbjct: 295 SAEAPQLGSGEENLPAQISGESMVVAFNVKYLLEGLKVMNSADV 338


>gi|317120851|ref|YP_004100854.1| DNA polymerase III subunit beta [Thermaerobacter marianensis DSM
           12885]
 gi|315590831|gb|ADU50127.1| DNA polymerase III, beta subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 369

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 192/389 (49%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +++SD+   L  A R +  ++T+PV   +LL A    L + A+  E+ +    PA 
Sbjct: 1   MRLVIDQSDLHAALQVAIRGVATRSTLPVLSGILLVAEPEQLRLVATDMEMTVEVLAPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +    L +IVR+L  G ++    E   G    I    S F +       FP+
Sbjct: 61  VQEEGSVVLPGRHLVEIVRRLPPG-EVHLEVE---GFRARILQERSRFTIHGTDPGIFPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +    + +L+N++ RT FA++T+E R  L G+ F    E  +L AVATDG R
Sbjct: 117 MPHISAGSTVLFDNGLLRNVLRRTTFAVSTDEGRPILTGVSF--RAEGDRLQAVATDGFR 174

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A   V +   +   P + ++P +++ E+ R+L  +    ++ L E++    +  + +  
Sbjct: 175 IAACSVTLERPVEGQPVAAVIPGRSLAEVARLLPDQGIG-RLLLDETQAGFQLGEVRLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296
           RL+DG +P+   ++P      +++     ++A +R ++++  R  A   ++L++   +L 
Sbjct: 234 RLVDGVYPDVLGLVPSEYPTRVQLPTRAFQEACERAALLADTRQPARWVIRLAVEPGRLV 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  +P++G+A E +    +   M I FN +YL++ +  I +     +EV+F L     +
Sbjct: 294 ITASDPELGEAREEIPAQVDGEGMVIGFNARYLVDGLKAIDT-----EEVLFELTEPLKA 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +RG   D         +  Y+++P++I
Sbjct: 349 SRLRGVGAD---------DFTYIVLPVKI 368


>gi|194016230|ref|ZP_03054844.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061]
 gi|194011703|gb|EDW21271.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061]
          Length = 378

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 182/352 (51%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+++  ++E +    + +  + TIP+   + + A+D  + +  S  +I I   I   
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFISQR 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL         ++N L    NI  G + F L  
Sbjct: 61  DGDLEVITIDRPGSIVLQARFFSEIVKKLPMTTVEIEVEQNHL---TNIRSGSAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++F++ + +LKNL+ +T FA++T E R  L G+ + + + +L +C
Sbjct: 118 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWRVEKGEL-IC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ RIL      V + ++E+++    
Sbjct: 177 T-ATDSHRLALRKAKLDIDEGSSYNVVIPGKSLTELSRILDDGQDLVSIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +++    RL+DG +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 QNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLSAD 295

Query: 292 SDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ L ++ ++P++GK +E++         + I F+ KY+L+ +  +   E+
Sbjct: 296 PEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGTEI 347


>gi|157690800|ref|YP_001485262.1| DNA polymerase III subunit beta [Bacillus pumilus SAFR-032]
 gi|157679558|gb|ABV60702.1| DNA-directed DNA polymerase III beta subunit [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 187/354 (52%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+++  ++E +    + +  + TIP+   + + A+D  + +  S  +I I   IP  
Sbjct: 44  MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPQR 103

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL         ++N L     I  G + F L  
Sbjct: 104 DGDLEVITIDRPGSIVLQARFFSEIVKKLPMATVEIEVEQNHLTI---IRSGSAEFNLNG 160

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++F++ + +LKNL+ +T FA++T E R  L G+ + + + +L +C
Sbjct: 161 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEKGEL-IC 219

Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+  A++DI  + +   ++++P K++ E+ RIL      V + ++E+++  
Sbjct: 220 T-ATDSHRLALRKAKLDIDEESSY--NVVIPGKSLTELSRILDDGQDLVSIVITETQVLF 276

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             +++    RL+DG +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 277 KAQNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLS 336

Query: 290 LSSDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
              ++ L ++ ++P++GK +E++         + I F+ KY+L+ +  +   E+
Sbjct: 337 ADPEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGTEI 390


>gi|83588877|ref|YP_428886.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC
           39073]
 gi|83571791|gb|ABC18343.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC
           39073]
          Length = 374

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 187/392 (47%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   +  ++  +    R +    T      +LLQA++  L ++ +  ++ I    P  
Sbjct: 1   MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A +  ++VR+L   +  +   ++N     V I++  S   L S   S+FP
Sbjct: 61  VIEEGELLLPARIFTEMVRRLPPTSLSLQSLQDNT----VEIAYQQSKVQLNSIDASQFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E  +SF +A + LK+ + +   A   +++R   NG+ + +   + +   VATD H
Sbjct: 117 LLPPVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTH 176

Query: 180 RLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV         + +  + +VP +A+ E+ R+L  +D  VK+++ ES+I+   E L++ 
Sbjct: 177 RLAVYHGQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLY 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS----SVRIQAVKLSLSSDK 294
            RL++G+FP+YQ VIP  +   + +   +L   V+R ++++      R   + L +    
Sbjct: 237 TRLLNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKS 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSS 353
           L +T +  ++G   E +       P+++  N +YLLE +       V+D E V+  L + 
Sbjct: 297 LKITSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETL------RVIDTENVILELLAP 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              V +R   ++         N F +++P+RI
Sbjct: 351 LKPVVVRPAGQE---------NYFCLILPVRI 373


>gi|282848765|ref|ZP_06258160.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745]
 gi|282581551|gb|EFB86939.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745]
          Length = 370

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL  G  I  +K  E G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++  +    ++   S   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N  V 
Sbjct: 297 TQNTEIGMAKEDVVVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|294794202|ref|ZP_06759338.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44]
 gi|294454532|gb|EFG22905.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44]
          Length = 370

 Score =  134 bits (338), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL  G  I  +K  E G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++  +    ++   S   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVILS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N  V 
Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|307265437|ref|ZP_07546993.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919551|gb|EFN49769.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 370

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 96/345 (27%), Positives = 177/345 (51%), Gaps = 10/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A  G ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V A +  ++VRKL +G       E++    VN+     NF +      EFP 
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEG---EVKVESDSQNTVNVVCDSINFTIAGSDAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     SF+L  ++LK+L+ +T F +A E+ R  L G+ F + + ++K  AVA DG R
Sbjct: 118 IPQVSRENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGFR 175

Query: 181 LAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+    +E     +  +  SI++P K + EI RIL  K++ +++  + +++   IE+  
Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILEDKETEIEIYHTANQVLFQIENTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +  DK  
Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKFI 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
               N + GK +E + V      ++I FN +YLL+ +  I  +E+
Sbjct: 295 TVSSNSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEI 339


>gi|253681213|ref|ZP_04862011.1| DNA polymerase III, beta subunit [Clostridium botulinum D str.
           1873]
 gi|253562451|gb|EES91902.1| DNA polymerase III, beta subunit [Clostridium botulinum D str.
           1873]
          Length = 367

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 188/388 (48%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + + A +  L +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHISAKNNELTLIGSDIDLSIETKIDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI V + +  +I+RKL +        EN     + I    S F L      EFP+
Sbjct: 61  VKEEGSIVVDSRIFGEIIRKLPNSLININTTEN---NSIEIICEKSKFDLIHMDSDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +   VLKN+++ T FA+A +E R  L GI F +   D K+  VA DG+R
Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEV--RDKKVNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    I  +     S ++P K   E+ +ILS  + +V ++ + + I  N+    +  R
Sbjct: 176 LALKSNMIHNE--NTISAVIPGKTFSEVSKILSDDEKNVNITFTPNHILFNLGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNC--TNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
           L++GEF  Y ++IP   + +L+VN     L   ++R S+M        VK  + +D L +
Sbjct: 234 LLEGEFIKYNSIIP--EEYKLKVNAKRAELLNCIERASLMGKEGNTNLVKFDIKNDNLII 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T  N  +G+  E +N+      ++I FN KYL++++  +      DDE++   DSS S  
Sbjct: 292 T-SNSQLGRVREELNIILQGDELEIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPC 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ K+ ++           Y+++P+R+
Sbjct: 346 VIKSKENNTYT---------YLVLPVRL 364


>gi|313893531|ref|ZP_07827101.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441974|gb|EFR60396.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 370

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL  G  I  +K  E G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++  +    ++   +   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N  V 
Sbjct: 297 TQNSEIGMAKEDIAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|212637851|ref|YP_002314371.1| DNA polymerase III subunit beta [Anoxybacillus flavithermus WK1]
 gi|212559331|gb|ACJ32386.1| DNA polymerase sliding clamp subunit [Anoxybacillus flavithermus
           WK1]
          Length = 378

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 186/353 (52%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R  ++  +    + +  + TIP+   + + A++  + +  S  +I I   IPA 
Sbjct: 1   MKVIIDREHLVRSVQDVMKAVSSRTTIPILTGIKIVASEQGVTLTGSDSDISIESFIPAE 60

Query: 61  ------VDVC--GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                 VDV   GS+ + A    +IVRKL ++  QI   K+  + T   I  G + F+L 
Sbjct: 61  EKDRIIVDVIKQGSVVLQARFFSEIVRKLPKETVQIEV-KDQFVTT---IRSGKAEFHLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   + +    F++ + +LK+++ +T FA++T E R  L G+ + I  E+ +L
Sbjct: 117 GLDPEEYPRLPQIQEENMFKVPADLLKHVIRQTVFAVSTSETRPILTGVNWRI--ENNEL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATD HRLA+ +  +  +     +I++P K++ E+ +IL   +  V + ++E++I   
Sbjct: 175 TCIATDSHRLAMRKAKVETESEAYFNIVIPGKSLNELNKILEESNELVHIVVTENQILFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + L    RL+DG +P+   +IP  +  ++ V      QA+DR S+++   R   V+LS 
Sbjct: 235 TKHLLFFSRLLDGNYPDTSRLIPTDSQTDVIVKTKEFLQAIDRASLLAREGRNNVVRLST 294

Query: 291 SSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            +DK+  ++ ++P++GK +E +     E   + I F+ KY+++ +  +   E+
Sbjct: 295 LADKIVEISSNSPEIGKVVEEVQCEQVEGEELKISFSAKYMMDALKALEGTEI 347


>gi|257871390|ref|ZP_05651043.1| DNA polymerase subunit III [Enterococcus gallinarum EG2]
 gi|257805554|gb|EEV34376.1| DNA polymerase subunit III [Enterococcus gallinarum EG2]
          Length = 376

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 92/340 (27%), Positives = 174/340 (51%), Gaps = 19/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55
           MK+T+ R++ ++ L    R I  K TIP+   V L   D  L +  S  +I I       
Sbjct: 1   MKVTLNRTEFMQELQTVQRAISSKTTIPILTGVKLVLTDKGLTLTGSNADISIETFLSVE 60

Query: 56  --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
              +   ++  G+I + A    +I+R+L D        EN    +V I+ G +NF +   
Sbjct: 61  KEKVQMKIEQTGAIVLQARFFSEIIRRLPDNTVTLEVIEN---NQVAITSGKANFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     E+ + +L  +V  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADSYPHLPVVESQDRIEVPAHILNKIVNETVFAVSQHESRPILTGVHFVL--ENKKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + +  A   +I++P K++ E+ R L+ ++ ++++S+ ++++     
Sbjct: 176 VATDSHRLSQRVIPLESGEANF-NIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTN 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +   L  A++R S++S   R   V+LS++ 
Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLSAIERASLLSHEGRNNIVRLSINE 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC---PMDICFNYKYL 329
           D + +  ++P++GK  E ++  Y +    P++I FN  Y+
Sbjct: 295 DSVILYGNSPEIGKVEEDLS--YEQVSGEPLEISFNPDYM 332


>gi|27466920|ref|NP_763557.1| DNA polymerase III subunit beta [Staphylococcus epidermidis ATCC
           12228]
 gi|57865930|ref|YP_190093.1| DNA polymerase III subunit beta [Staphylococcus epidermidis RP62A]
 gi|251811365|ref|ZP_04825838.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874722|ref|ZP_06283601.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135]
 gi|293367579|ref|ZP_06614232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38604836|sp|Q8CQK6|DPO3B_STAES RecName: Full=DNA polymerase III subunit beta
 gi|81672839|sp|Q5HK00|DPO3B_STAEQ RecName: Full=DNA polymerase III subunit beta
 gi|27314462|gb|AAO03599.1|AE016744_2 DNA polymerase III beta subunit [Staphylococcus epidermidis ATCC
           12228]
 gi|57636588|gb|AAW53376.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis RP62A]
 gi|251805114|gb|EES57771.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296438|gb|EFA88953.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135]
 gi|291318292|gb|EFE58685.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724168|gb|EGG60686.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU144]
 gi|329736046|gb|EGG72319.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU045]
          Length = 377

 Score =  134 bits (337), Expect = 2e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 190/376 (50%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T   I+ G S F L  
Sbjct: 62  VDGEEIVEITETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  + ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +N    E   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 352 -GTMKPFILKPKDDDS 366


>gi|28209865|ref|NP_780809.1| DNA polymerase III subunit beta [Clostridium tetani E88]
 gi|28202300|gb|AAO34746.1| DNA polymerase III, beta chain [Clostridium tetani E88]
          Length = 367

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S + E +  A + +  K+T+P+   + ++A +  L +  S  ++ I   + A 
Sbjct: 1   MKIFCNKSILQESISIAQKAVTGKSTMPILQGIFIKAENNSLTLIGSDIDLSIETIMDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI + + +  +I+RKL +       K+N +   + I    S F L      EFP 
Sbjct: 61  VIEEGSIVIDSKIFGEIIRKLPNDVIEITSKDNNI---IEIKCQKSKFNLVHMSADEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +  ++LKN+V  T FA + EE R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 LPKINENIIFSIPEALLKNMVRGTIFATSQEETRPILTGLLFEIKDKILNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV    I ++     S ++P K + E+ +ILS  D  V ++ + + I  +I    +  R
Sbjct: 176 LAVKSEIIDSE--NSISAVIPGKTLNEVSKILSENDEKVNITFTPNHILFSIGKTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTV 299
           L++G+F NY+++IP   + ++        + ++R S+M        +KL+++ D + +T 
Sbjct: 234 LLEGDFINYKSIIPKEYNLKVIAKRIKFLECIERASLMGKDGNTSLIKLNITDDSIVIT- 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E M +      ++I FN KYL++++  +      +DE++  L SS S   I
Sbjct: 293 SNSQLGMVREEMGIILQGEDLEIAFNSKYLIDVLKVME-----EDEIILELSSSISPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K+ +         +  Y+++P+R+
Sbjct: 348 KNKEAN---------DCTYLVLPVRL 364


>gi|238018222|ref|ZP_04598648.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748]
 gi|237864693|gb|EEP65983.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748]
          Length = 370

 Score =  134 bits (337), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 95/386 (24%), Positives = 184/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL  G  I  +K  E G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLP-GDTIELYKP-EDGNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++  +    ++   +   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N  V 
Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDN------IHLFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|146300470|ref|YP_001195061.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101]
 gi|14531036|gb|AAK63183.1| DNA polymerase III beta subunit DnaN [Flavobacterium johnsoniae
           UW101]
 gi|146154888|gb|ABQ05742.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101]
          Length = 372

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 175/344 (50%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLSID 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A LL +I++   +   ++F  E+     V IS     + L      EFP 
Sbjct: 61  STSKGSVAVPAKLLLEILKTFPE-QPLTFTVED--NNTVEISSNSGKYALAYAAGEEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +   E      + + VL   V +T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 SVNLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   A  D+ A  +++   I+P+K +  +  IL S D+ VK+  ++S    + ++  +  
Sbjct: 176 LVKYARADVKA--SQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++PNY+ VIP  N  +L ++ +    +V RV+I S+     ++L ++  +L ++ 
Sbjct: 234 RLIDGKYPNYEAVIPKENPNKLLIDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSA 293

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   KA E +   Y    + I FN ++L+E++ N+ SD ++
Sbjct: 294 EDIDYSNKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIM 337


>gi|289551835|ref|YP_003472739.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181366|gb|ADC88611.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis
           HKU09-01]
          Length = 377

 Score =  134 bits (336), Expect = 3e-29,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GNEVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  +  + +  +++++   +
Sbjct: 177 CTATDSHRLAVRKLQLEDN-SENKNVIIPGKALAELNKIMSDSEEDIDIFFAQNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
             ++ + RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           +D + ++  +P++G   E +N    E   + I FN KY+++ +  I +DEV
Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAIDNDEV 346


>gi|315659994|ref|ZP_07912852.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           lugdunensis M23590]
 gi|315494895|gb|EFU83232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           lugdunensis M23590]
          Length = 377

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GNEVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  +  + +  +++++   +
Sbjct: 177 CTATDSHRLAVRKLQLEDN-SENKNVIIPGKALSELNKIMSDSEEDIDIFFAQNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
             ++ + RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           +D + ++  +P++G   E +N    E   + I FN KY+++ +  I +DEV
Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAIDNDEV 346


>gi|315187336|gb|EFU21092.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6578]
          Length = 367

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 104/385 (27%), Positives = 180/385 (46%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T ER ++++ +  A  II  KN + +  +VLL A D  L I+A+  ++    + P  
Sbjct: 1   MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSKLTIRATDLKVGFETSSPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV    L  I+R L  GA + F  +      +       NF L++    ++P 
Sbjct: 61  VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                  Y F +  S L  ++  T FA++ +E RY++NG+F    E+ L +  VATDG R
Sbjct: 120 MPLHGDSY-FSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E ++   +     +I+P K +  + R L   +  V  ++ E  + L    + +S  
Sbjct: 177 LAYIEKEVDGGVPDFNGVIIPPKIL-HLARKLLPGEGMVDFAIGEKHVFLRYGDVYLSSN 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G FP Y+ VIP        +      +A+ RVS++   + + V L++    L +  +
Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVRSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E +   Y +  + I  NY YLLE +  ++ ++V   E+ F   S   +V   
Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVMTEEQV---EIAFTEPSRAITV--- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +   F+++MPM++
Sbjct: 350 --------RPVPEREFFHIVMPMQL 366


>gi|89898369|ref|YP_515479.1| DNA polymerase III subunit beta [Chlamydophila felis Fe/C-56]
 gi|89331741|dbj|BAE81334.1| DNA polymerase III beta chain [Chlamydophila felis Fe/C-56]
          Length = 366

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 107/386 (27%), Positives = 192/386 (49%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS       G    I+ G S F L S  + +FP
Sbjct: 61  VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I   D  +  V TDG 
Sbjct: 117 MLPDIQNSIRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTI--ADGMVTVVGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + +I    +     IVP KAV E+++ L S+DS   + L +++I +   +  +  
Sbjct: 175 RLAKTDTEISLDKSFAGDYIVPIKAVEEMIK-LCSEDSEATIFLDQAKIAVECGNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK + +  +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V      RL  S+S  + 
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   DS         + +V+MPMR+
Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363


>gi|108802858|ref|YP_642795.1| DNA polymerase III subunit beta [Rubrobacter xylanophilus DSM 9941]
 gi|108764101|gb|ABG02983.1| DNA polymerase III, beta subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 375

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 105/374 (28%), Positives = 188/374 (50%), Gaps = 20/374 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           L    R +  ++ + V   VLL+A +G LE+ A+  E+ I    PA V+  G + + A +
Sbjct: 14  LALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTRSPAEVEEAGRLVIPARI 73

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
             DIVR L +G  IS   + E G  V  S  ++ + ++++   +FP+  E     SF ++
Sbjct: 74  FSDIVRSLPEG-MISIEHDVESGAAVLRSR-ENEYRIRAYAAEDFPALPEFSEEGSFRVS 131

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
              L   V++   + + +E R  L GI   I+ ED +L  V TD +RL++ E ++     
Sbjct: 132 GEALVETVQKVSSSYSRDETRPVLTGIL--ISFEDSRLRMVTTDSYRLSIKETELATTFE 189

Query: 194 KMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
                I+P +A+ E+ RI S  D   ++V LSE++    +  + +  +LI G FP Y+ +
Sbjct: 190 GKREAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGTKLIAGNFPEYRRL 249

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIES 310
           +P + ++E+ VN   +  ++ RV++ +  +   V +SL  S   + + V + ++G+A E 
Sbjct: 250 LPAAFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEVVVRSGEVGEAHER 309

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370
           +    +E    I FN  YLL   D IS+  V  ++VVF+ +       I         N 
Sbjct: 310 IPA-SSEDDFTISFNPGYLL---DGISA--VDTEKVVFKFNEPLKPGLI-------VPNG 356

Query: 371 DNKVNAFYVLMPMR 384
           + + +  Y++MPMR
Sbjct: 357 EEEPDFRYLIMPMR 370


>gi|321313669|ref|YP_004205956.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5]
 gi|291482371|dbj|BAI83446.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019943|gb|ADV94929.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5]
          Length = 378

 Score =  133 bits (335), Expect = 4e-29,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 186/352 (52%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL   A +    +N+  T   I  G + F L  
Sbjct: 61  EGDKEIVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + + + +L LC
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSEL-LC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +     +  ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 177 T-ATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            ++ + ++ ++P++GK +E++     E   ++I F+ KY+L+ +  +   E+
Sbjct: 296 PAESIEISSNSPEIGKVVEAIAADQIEGEELNISFSPKYMLDALKVLEGAEI 347


>gi|223043416|ref|ZP_03613462.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14]
 gi|222443205|gb|EEE49304.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14]
          Length = 377

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 98/376 (26%), Positives = 187/376 (49%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVEISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQL-EDTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +     E   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 352 -GTMKPFILKPKDDDS 366


>gi|297543500|ref|YP_003675802.1| DNA polymerase III subunit beta [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841275|gb|ADH59791.1| DNA polymerase III, beta subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 370

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 93/346 (26%), Positives = 177/346 (51%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A    ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKITALKDQVKFSGTDLDIGIECQIPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G I V A +  ++VRKL ++  +I    E++    VN+     NF +      EFP
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEEDVKI----ESDSQNTVNVICDSINFTIAGSDAVEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     SF+L  ++LK+L+++T F +A E+ R  L G+ F +   ++K  AVA DG 
Sbjct: 117 EIPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGF 174

Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           R+A+    +E     +  +  SI++P K + EI +IL  +++ + +  + +++   IE+ 
Sbjct: 175 RMAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +  DK 
Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                N + GK +E + V      ++I FN +YLL+ +  I  +E+
Sbjct: 294 ITVSSNSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAIDEEEI 339


>gi|315640355|ref|ZP_07895471.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus
           DSM 15952]
 gi|315483891|gb|EFU74371.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus
           DSM 15952]
          Length = 376

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/340 (27%), Positives = 174/340 (51%), Gaps = 19/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ R   ++ L    R I  K TIP+   V +Q +   L +  S  +I I   + A+
Sbjct: 1   MKVTLHRGTFIQELQTVQRAISSKTTIPILTGVKIQLSHQGLTLTGSNADISIETFLSAT 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +IVR+L +    +F  E     +V I+ G ++F +   
Sbjct: 61  NEKANMQIEQTGAIVLQARFFGEIVRRLPEE---TFTLEVIENNQVLITSGKASFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E      +   VL  L+  T FA++  E R  L G+  H+  ++ +L A
Sbjct: 118 DADNYPHLPVVETNQQLTIPVEVLNQLISETVFAVSQHESRPILTGV--HMTLKNNQLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + +Q  ++  I++P K++ E+ R L+  D  + +S+ E+++    E
Sbjct: 176 VATDSHRLSQRTIPLESQSDQI-DIVIPGKSLTELSRSLAETDEQIDISIMENQVLFETE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +   L  A++R S++S   R   VKLS++ 
Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPTSFNTEIEFSVPALLAAIERASLLSHEGRNNIVKLSITD 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC---PMDICFNYKYL 329
             + +  ++P++GK  ES++  Y++    P+DI FN  Y+
Sbjct: 295 QDVILYGNSPEVGKVEESLS--YDKVSGDPLDISFNPDYM 332


>gi|167629173|ref|YP_001679672.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum
           Ice1]
 gi|167591913|gb|ABZ83661.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum
           Ice1]
          Length = 371

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 171/344 (49%), Gaps = 7/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +  R ++LE +    R +  K T PV   + L+A D  L + A+  E+ I   IP  
Sbjct: 1   MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIPVR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  V+A +  ++ R+L +G  I+F    +    + + +  S   L +    EFP 
Sbjct: 61  TKRTGSTVVNARIFNEMARRLPEGP-ITFCVNGD-NPALKVRYHGSELTLNTMNPQEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +     K +     FA +++E R +  G+ + I  E+++   VATD HR
Sbjct: 119 LPAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRW--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+     V      P  +I+  K + ++ R+L  ++  ++++L+ S+  L  + L + +
Sbjct: 177 LALLSGQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVIL 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCM 297
           R+I+G++P YQ VIP  +   L +    L +AVDR S+ S  +  +  +KLS   + L +
Sbjct: 237 RIIEGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             ++P++G   E + V  +  P+ I FN++YL +++  + +++V
Sbjct: 297 RSNSPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDTEQV 340


>gi|313675527|ref|YP_004053523.1| DNA polymerase iii, beta subunit [Marivirga tractuosa DSM 4126]
 gi|312942225|gb|ADR21415.1| DNA polymerase III, beta subunit [Marivirga tractuosa DSM 4126]
          Length = 374

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 94/343 (27%), Positives = 173/343 (50%), Gaps = 8/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ +     +I     +P+  + L +  DGLL I AS  +  +   I   
Sbjct: 1   MKFLVSSSALLKQISSINGVISTNPMVPILENFLFEIQDGLLTITASDLQTSMITEIDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSI V A +L D ++ L +  Q   F  +E    + IS  +  + L     ++FP 
Sbjct: 61  SSENGSIAVPARILMDTLKNLPE--QPVTFSIDEETYSIEISSDNGRYKLAGENATDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E E   + ++++ VL   +  T +A + +E+R  + G++   +E +     VATDG+R
Sbjct: 119 VQEVENPDTVDISADVLATAINHTIYATSNDELRPAMGGVYVKFDETNTTF--VATDGNR 176

Query: 181 L-AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L     VD+ +       II+PRKA+  +   L +++ +V V  + S  +    ++ +  
Sbjct: 177 LIRYRRVDVASDSGT--GIIIPRKALSLLKNSLPAENVNVAVEFNMSNAYFKFNNIKLIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL+D  FP+Y+NVIP  N+ +L +N      ++ R+SI ++     V+L ++  +L +  
Sbjct: 235 RLVDERFPDYENVIPAENNIKLTINRQEFMSSLKRISIYANKTTHQVRLKINGSELQIFA 294

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   +A E M   +    ++I FN K+L+E+++N+ S EV
Sbjct: 295 EDLDFSNEANEIMACEHQGDDIEIGFNAKFLVEMLNNLDSKEV 337


>gi|315925612|ref|ZP_07921822.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621153|gb|EFV01124.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 369

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 182/342 (53%), Gaps = 7/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++D++  L    R +  K T+P+   +L +  D  L + ++  EI I  +IPA 
Sbjct: 1   MKFDCSKTDLISALSLVSRGVSNKTTMPILEGILFEVYDHRLFLTSTNLEISIQTSIPAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + ++ ++++VRKL  G  + F  E     ++ ++   S F ++     EFP 
Sbjct: 61  VEQDGELILQSNFIFELVRKLS-GEDVFF--EQMAQHQLKMTCECSTFTIKGMASDEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    YSF + ++ LK ++  T FA+A +E    L G+   I ++  +L  +A DG+R
Sbjct: 118 FPKVIDDYSFTVDAAALKAMIHGTIFAVAIKENIPVLTGLKLEIEQD--QLTMIALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I +  SIIVP K++ E+ ++LS     V+V+LS+++I   +     + R
Sbjct: 176 LALRRGALSTPINEAVSIIVPGKSMMELDKLLSGVSGDVQVNLSKAQIFFTMGDTQFTSR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L++GEF NY+++IP   + E+ ++   L  + +R ++++   +   +K++   D+L ++ 
Sbjct: 236 LLEGEFINYKHIIPKDKNTEVVIDKKLLLDSTERAALLAREGKNNLIKMAFGIDELTLS- 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            N ++G   E + +      + I FN K++++ +  I  +++
Sbjct: 295 SNAEIGDVHEVIPIQKTGDDLKIAFNSKFIIDALRAIDQEQI 336


>gi|300853234|ref|YP_003778218.1| DNA polymerase III subunit beta [Clostridium ljungdahlii DSM 13528]
 gi|300433349|gb|ADK13116.1| DNA polymerase III, beta chain [Clostridium ljungdahlii DSM 13528]
          Length = 367

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 191/388 (49%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M     ++++ E +  A + I  K+++P+   +L+      +++  S  ++ I   I A 
Sbjct: 1   MNFICTKTELQEAISIAQKAITGKSSMPILNGLLITTCKNQIKLTGSDIDLSIETKINAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   GS+ V + L  +I+RKL  D   IS  + N     + I    S F L      +FP
Sbjct: 61  IKEEGSVVVDSRLFGEIIRKLPNDNINISTTENNS----IEIICQKSKFNLIHMNAEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                     F +   +LK++++ T FA A +E R  L GI F I  +D KL  VA DG+
Sbjct: 117 EIPNINENIIFLIPQKILKDMIKSTIFAAAQDETRPILTGILFEI--KDKKLNLVALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +  +   + + ++P K + E+ +IL   D +V ++ + + I  N+++  +  
Sbjct: 175 RLALKSEYLNTE--NIINAVIPEKTLSEVSKILEDNDKNVNITFTPNHILFNLDNTKIIS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF  Y ++IP   + ++      L   ++R S+M+       +KL +  + + +T
Sbjct: 233 RLLEGEFIKYNSIIPDEFNLQVTAKREELLSCIERASLMAKDSNTNLIKLEIEENNMIIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRLDSSNSSV 357
             N  +G   E +N+      + I FN KYL++++      +++D +E++ +  SS S  
Sbjct: 293 -SNSQLGMVREELNILLQGDTLKIAFNSKYLIDVL------KIMDEEEIIMKFSSSVSPC 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ KDKD         N  Y+++P+R+
Sbjct: 346 VIKNKDKD---------NCTYLVLPVRL 364


>gi|29840207|ref|NP_829313.1| DNA polymerase III subunit beta [Chlamydophila caviae GPIC]
 gi|29834555|gb|AAP05191.1| DNA polymerase III, beta chain [Chlamydophila caviae GPIC]
          Length = 366

 Score =  133 bits (334), Expect = 5e-29,   Method: Compositional matrix adjust.
 Identities = 106/386 (27%), Positives = 193/386 (50%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNEVGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS       G    I+ G S F L S  + +FP
Sbjct: 61  VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  L+ +++RT FA++ EE RY L G+   I   +  +  V TDG 
Sbjct: 117 MLPDIQNAIRFTLPAEQLREMLQRTSFAVSREESRYVLTGVLLTI--ANGIVTVVGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + +I    + +   IVP KAV EI++ L S+DS   + L +++I +   +  +  
Sbjct: 175 RLAKTDTEISLDKSFIGDYIVPIKAVEEIIK-LCSEDSEATIFLDQAKIAVECGNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK + +  +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V      RL  S+S  + 
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   DS         + +V+MPMR+
Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363


>gi|138893681|ref|YP_001124134.1| DNA polymerase III subunit beta [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249895|ref|ZP_03148591.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16]
 gi|134265194|gb|ABO65389.1| DNA polymerase III, beta subunit [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210771|gb|EDY05534.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16]
          Length = 378

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 98/352 (27%), Positives = 177/352 (50%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I+++R  + + +    + +  + TIP+   + L AN   + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTANAHGMTLTGSDSDISIESFIPLE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 VDV   GSI + A    +IV+KL    Q +   E E      I  G S F L  
Sbjct: 61  KEGRLLVDVKRPGSIVLQARFFAEIVKKL---PQQTIEIETEDNFLTVIRSGHSEFRLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK L+ +T FA++T E R  L G+ + +  E+ +L 
Sbjct: 118 LNAEEYPRLPQIEEENVFQIPADLLKTLIRQTVFAVSTSETRPILTGVNWKV--ENGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +V I A+ A   ++++P K++ E+ +IL   ++ V + ++ +++    
Sbjct: 176 CTATDSHRLAMRKVKIEAENAISYNVVIPGKSLNELSKILDDGNAPVSIVITANQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-SL 290
           E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VKL +L
Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTDSKTNMVVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
               L ++  +P++GK  E +     E   ++I F+ KY+++ +  +  +++
Sbjct: 296 PGGLLEISSISPEIGKVTEQLQTESIEGEELNISFSAKYMMDALRALDGNDI 347


>gi|16077070|ref|NP_387883.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307811|ref|ZP_03589658.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312133|ref|ZP_03593938.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317066|ref|ZP_03598360.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321329|ref|ZP_03602623.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|118797|sp|P05649|DPO3B_BACSU RecName: Full=DNA polymerase III subunit beta
 gi|40015|emb|CAA26218.1| unnamed protein product [Bacillus subtilis]
 gi|467392|dbj|BAA05238.1| beta subunit of DNA polymerase III [Bacillus subtilis]
 gi|2632269|emb|CAB11778.1| DNA polymerase III (beta subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 378

 Score =  133 bits (334), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 186/352 (52%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL   A +    +N+  T   I  G + F L  
Sbjct: 61  EGDKEIVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + + + +L LC
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSEL-LC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +     +  ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 177 T-ATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            ++ + ++ ++P++GK +E++     E   ++I F+ KY+L+ +  +   E+
Sbjct: 296 PAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGAEI 347


>gi|154492231|ref|ZP_02031857.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC
           43184]
 gi|154087456|gb|EDN86501.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC
           43184]
          Length = 374

 Score =  132 bits (333), Expect = 6e-29,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 173/349 (49%), Gaps = 16/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  + +L  L    ++I  KN++P+    L       L I AS  E  +      S
Sbjct: 1   MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLV----TS 56

Query: 61  VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           VDV      G   VSA +L D +++L +        ++ L   ++  +G  NF  Q    
Sbjct: 57  VDVMNAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK--G 114

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             +P  K   E   S  + + +L N + R+ FA A +E+R  +NGI+F I+ +DL    V
Sbjct: 115 DTYPQQKPLNENAISIMMDAQMLLNGISRSLFATADDELRPVMNGIYFDIHTDDLTF--V 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+DGH+L V   ++  +  +  S I+P+K    +  +LS +   V +   ++  ++N  +
Sbjct: 173 ASDGHKL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEGEMVSIKFDDNNAYINCAN 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             M  RLI+G +PNY +VIP  N  ++ ++  +   A+ RVS+ S+     VKL L  ++
Sbjct: 232 FEMVCRLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLQLKENE 291

Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + ++  + D   + E   V  ++   + I F   YL+EI+ NI+S+EV+
Sbjct: 292 MLVSAQDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINSEEVI 340


>gi|333030103|ref|ZP_08458164.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011]
 gi|332740700|gb|EGJ71182.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011]
          Length = 374

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 102/350 (29%), Positives = 171/350 (48%), Gaps = 18/350 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L Q  +G+L +  S  E      +  S
Sbjct: 1   MKFIVSSAALYSHLQAVSRVINSKNALPILDCFLFQLENGVLSVTVSDSET----TMETS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           +DV      G I ++A  L D ++++ +  Q   F  +    EV +++ +  + L     
Sbjct: 57  IDVIECVTEGKIAIAAKTLLDALKEIPE--QPLTFSVDSSTLEVTVTYQNGQYSLMGQNA 114

Query: 116 SEFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
            E+P +     E V  F ++   L   + RT +A A +E+R  +NG++F I  ED+ +  
Sbjct: 115 DEYPQSAALNNESV-KFTMSVDTLLAGINRTVYATADDELRPVMNGVYFDITTEDITM-- 171

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VA+DGH+L   +V + A+     + I+P+K    +  IL  +   V++S  E      + 
Sbjct: 172 VASDGHKLVRCQV-LDAKGNDRAAFILPKKPANLLKNILPKEQGEVEISFDERNAIFALG 230

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +  M  RLI+G +PNY +VIP  N  ++ V+  +   A+ RV+I SS     VKL L   
Sbjct: 231 NYHMICRLIEGRYPNYNSVIPKDNPFKVTVDRVSFIGALRRVAIFSSQASSLVKLRLKDS 290

Query: 294 KLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            + ++  + D    A E++   Y    M I F   +L++I+ NISSDEVV
Sbjct: 291 SMNISAQDIDFSTSAEENLVCQYTGTDMSIGFKSTFLIDILSNISSDEVV 340


>gi|88697476|gb|ABD48432.1| DnaN [Morganella psychrotolerans]
 gi|88697478|gb|ABD48433.1| DnaN [Morganella psychrotolerans]
 gi|88697492|gb|ABD48440.1| DnaN [Morganella psychrotolerans]
 gi|88697494|gb|ABD48441.1| DnaN [Morganella psychrotolerans]
 gi|88697496|gb|ABD48442.1| DnaN [Morganella psychrotolerans]
 gi|88697498|gb|ABD48443.1| DnaN [Morganella psychrotolerans]
 gi|88697500|gb|ABD48444.1| DnaN [Morganella psychrotolerans]
 gi|88697502|gb|ABD48445.1| DnaN [Morganella psychrotolerans]
 gi|88697504|gb|ABD48446.1| DnaN [Morganella psychrotolerans]
 gi|88697506|gb|ABD48447.1| DnaN [Morganella psychrotolerans]
 gi|88697510|gb|ABD48449.1| DnaN [Morganella psychrotolerans]
 gi|88697512|gb|ABD48450.1| DnaN [Morganella psychrotolerans]
          Length = 193

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 76/200 (38%), Positives = 116/200 (58%), Gaps = 9/200 (4%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+   +P       G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVPLVQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141
           DGAQIS     EL G  + +  G S F L + P S+FP+  + +   +F L  + LK L+
Sbjct: 61  DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLI 116

Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201
           E T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI   +    S+IVP
Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPDH-SVIVP 173

Query: 202 RKAVGEILRILSSKDSSVKV 221
           RK V E++R+L   ++ +K+
Sbjct: 174 RKGVIELMRLLDGGETLLKL 193


>gi|295698377|ref|YP_003603032.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291156994|gb|ADD79439.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 367

 Score =  132 bits (333), Expect = 7e-29,   Method: Compositional matrix adjust.
 Identities = 100/360 (27%), Positives = 182/360 (50%), Gaps = 25/360 (6%)

Query: 30  SC-HVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQI 87
           SC  +LL   D +L +     EI I   +     D  GSI VS    ++I    Q  ++I
Sbjct: 29  SCDKILLSVKDNILSLTYLDSEIGIIAKVKLMYSDQDGSIVVSIRKFFNICLNSQPKSKI 88

Query: 88  SFF--KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTH 145
            FF  K+N +     I +G S F +  F E +FP         +F+++    K L+  T 
Sbjct: 89  YFFFNKKNLI-----IFYGRSKFSILVFSEFDFPKLVIWNANSNFKISQMEWKRLILSTK 143

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
            +M  ++ RYYLN +     E  +K+  V+TDGHRL+ + V I        S+++ R+++
Sbjct: 144 ISMGFQDARYYLNSMLLEKRENYIKM--VSTDGHRLSASYVKIQFGSQNDFSVLLSRRSI 201

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
            E L++L + D  ++V + E    ++I ++S   +LI+G FPNY++V+  +  K + VN 
Sbjct: 202 VECLKLLENNDDFLQVFIGEKDFRMDINNISFHAKLINGNFPNYESVLSRNKKKIVTVNR 261

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
              ++   R  I+ + + Q       ++ + +T  N D G+  ES++  Y + P+ I  N
Sbjct: 262 ILFKEMCSRALILLNDKNQNACFVFENNLIRITTKNFDQGEYEESIDSQYQDSPVKIYLN 321

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            KY+L++++ I  + V       +++ ++S  +IR +   ++        +FYV+MP+RI
Sbjct: 322 IKYVLDVLNIIQCENV-------KIEITDSISYIRIQGISNR-------LSFYVIMPIRI 367


>gi|283767792|ref|ZP_06340707.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461671|gb|EFC08755.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus H19]
          Length = 377

 Score =  132 bits (333), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 90/351 (25%), Positives = 180/351 (51%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           E+++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 ENVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|317968477|ref|ZP_07969867.1| DNA polymerase III subunit beta [Synechococcus sp. CB0205]
          Length = 376

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 196/391 (50%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKLVCSQAELNSSLQLVSRAVAARPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV   G+IT+ A L  +IV ++   + I+   E E   +V ++    ++ ++  P  +F
Sbjct: 61  ASVATSGAITLPARLFGEIVSRMPADSPITLSCE-EGSEQVELTSLSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +     +L   VL   +  T FA + +E +  L G+   +++  L+ CA ATDG
Sbjct: 120 PELPLAQAGTPIKLDPEVLIKGLRATLFASSGDEAKQLLTGVHLGLDQNGLE-CA-ATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236
           HRLAV  +   +       + VP +++ E+ R+LSS+  S  VSL     ++        
Sbjct: 178 HRLAVLRLQNASSSEAELDVTVPARSLRELERLLSSRGGSDAVSLFCDRGQVVFQWADQV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS--LSSDK 294
           ++ R +DG +PNY+ +IP S  ++L+V+   L +A++RV++++      VKL+   ++ +
Sbjct: 238 LTSRSLDGTYPNYRQLIPESFGRQLQVDRKGLLRALERVAVLADQHNNVVKLTSDPAAGQ 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++ D  D+G   E++    +   + I FN +Y+LE +  +       ++V  + ++  
Sbjct: 298 LSISADAQDVGSGSEAIGAQVSGDAIQIAFNVRYVLEGLKAMGC-----EQVQLQCNAPT 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + V +  +D  S           Y++MP++I
Sbjct: 353 TPVVLAPQDDSSFT---------YLVMPVQI 374


>gi|228473010|ref|ZP_04057767.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275592|gb|EEK14369.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 384

 Score =  132 bits (332), Expect = 8e-29,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 167/344 (48%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L     +I   NT+P+  + L + ++  L + AS  E  I G I   
Sbjct: 12  MRFIVSSSYLLKKLQIIGGVINSNNTMPILENFLFELSENKLVVSASDLETTIKGVIEVE 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                SI V   +L D ++   + A      +N     ++I   +  + L     +EFPS
Sbjct: 72  STDSISIAVPYKILIDTLKTFSEQALTFIINDN---NTIDIVSNNGKYTLAYLDSNEFPS 128

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L   +L   ++ T FA   +++R  +NG+FF+  EE L   A  TD H+
Sbjct: 129 VVEIENASQVTLMGDILATAIQSTFFATGNDDLRPIMNGVFFNFTEEGLIFAA--TDAHK 186

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   E  DI +   +  + ++P+K +  +  IL+  ++ V +  +ES    + + L    
Sbjct: 187 LVKYERQDIKSD--QPAAFVIPKKPLNLLKGILAGSETQVTIEYNESNAKFSFDQLDYVC 244

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG +PNY+ VIP  N  +L VN   +  +  R+S  +S     +++ +  + L +  
Sbjct: 245 RLIDGTYPNYEAVIPKENPNKLIVNRNLILNSTKRISNFASKATHQMRIKIVGNSLQIFA 304

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ +   +A E++   Y    M+I FN K+ +E++ N+SSDE++
Sbjct: 305 EDIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSSDEIL 348


>gi|326335580|ref|ZP_08201767.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692346|gb|EGD34298.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 373

 Score =  132 bits (332), Expect = 9e-29,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 167/344 (48%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L     +I   NT+P+  + L + +   L + AS  E  I G I   
Sbjct: 1   MRFIVSSSYLLKKLQIIGGVINTNNTMPILENFLFELSGNKLVVSASDLETTIKGVIEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                SI V   +L + ++   + A      +N     V+I   +  + L     +EFP+
Sbjct: 61  SSDTVSIAVPYKILIETLKTFTEQALTFIINDN---NTVDIVSNNGKYTLAYLDSAEFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L   +L   ++ T FA   +++R  +NG+FF++ E+   L   ATD H+
Sbjct: 118 IVEIENANHVSLMGDILATAIQSTLFATGNDDLRPIMNGVFFNLTED--ALIFAATDAHK 175

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L   E  DI ++     S ++P+K +  +  IL+  +S V +  +ES    + + L    
Sbjct: 176 LVKYERQDIKSEYPA--SFVIPKKPLNLLKGILAGSESEVTIEYNESNAKFSFDQLDYVC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG +PNY+ VIP  N  +L VN   L  +  R+S  +S     +++ +  + L +  
Sbjct: 234 RLIDGNYPNYEAVIPKENPNKLIVNRNLLMNSTKRISNFASKSTHQMRVKIVGNSLQIFA 293

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ +   +A E++   Y    M+I FN K+ +E++ N+SSDEV+
Sbjct: 294 EDIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSSDEVL 337


>gi|296330038|ref|ZP_06872522.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672700|ref|YP_003864371.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153077|gb|EFG93942.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410943|gb|ADM36061.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 378

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 92/352 (26%), Positives = 186/352 (52%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL   A +    +N+  T   I  G + F L  
Sbjct: 61  EGDKEIVTIEQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + + + +L LC
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSEL-LC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +     +  ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 177 T-ATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            ++ + ++ ++P++GK +E++     E   ++I F+ KY+L+ +  +   E+
Sbjct: 296 PAESIEISSNSPEIGKVVEAILADQIEGEELNISFSPKYMLDALKVLEGAEI 347


>gi|238855507|ref|ZP_04645812.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3]
 gi|260665211|ref|ZP_05866060.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931533|ref|ZP_06337032.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
 gi|313472765|ref|ZP_07813253.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153]
 gi|238831873|gb|EEQ24205.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3]
 gi|239529254|gb|EEQ68255.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153]
 gi|260560948|gb|EEX26923.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304340|gb|EFA96443.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
          Length = 376

 Score =  132 bits (332), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 172/337 (51%), Gaps = 13/337 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  L+ L +  R I  + TIP+   + +  ++  L +  S  +I I   IP S
Sbjct: 1   MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEDLILTGSDTDISIEIKIPVS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   +F  E + G +  IS  +S F +     +
Sbjct: 61  EDLKVESTGSIVLPARFFNEIIKKLP-GKDFNF--EVKEGLQTQISSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +FE++    + ++  T+FA++T+E R  L G+ F  N+  +K  AVAT
Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +D+         +I+P K++ E+ RI+  +D  V V+  ++++   I ++S
Sbjct: 176 DSHRLSQRVIDLENGPQVETDLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNIS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL++G +P+   ++P ++      +  +L QA+DRVS+++   R   VKL+L +   
Sbjct: 236 FYSRLLEGTYPDTDRLLPTNSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTQNG 295

Query: 296 CMTV--DNPDMGKAIES-MNVYYNECPMDICFNYKYL 329
              +  D+P++G   E  +        ++I FN  YL
Sbjct: 296 VAQLEGDSPEIGTVEEKPLAKQLTGQNLEISFNPDYL 332


>gi|325954048|ref|YP_004237708.1| DNA polymerase III subunit beta [Weeksella virosa DSM 16922]
 gi|323436666|gb|ADX67130.1| DNA polymerase III, beta subunit [Weeksella virosa DSM 16922]
          Length = 372

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 90/343 (26%), Positives = 164/343 (47%), Gaps = 7/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ +     +I   NT+P+  + L +     L I  S  E  I+      
Sbjct: 1   MKFIVSSNTLLKNVNTIGGVINNNNTLPILDNFLFELKGNELTITGSDLETTISTTFEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G I V + +L D ++       ++F +++  G  + I     N+ L     SE+P 
Sbjct: 61  SEDEGKIAVPSKILTDTLKTFP-AQPLTFIQKD--GNTLEIVSEQGNYQLAYEDASEYPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T + E  +  +L +SV+   + +T FA   +E+R  + G+ F    +      VATD HR
Sbjct: 118 TPDVEEAHLTKLPASVISEAILKTIFATGNDELRPIMTGVLFQAQPDVFNF--VATDAHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V       Q  +    I+P+K +  +  IL   +  V +  +++      +++ ++ R
Sbjct: 176 L-VKYSRTGLQSVEAAEYIMPKKPLNLLKNILGGNNDEVTIEYNQTNTRFTFQNIVLTCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY  VIP  N   L +N      ++ RV+I S+     ++L L  + L ++ +
Sbjct: 235 LIDGKYPNYDAVIPKENPNVLTINRNLFLSSLKRVAIFSNKTTNQIRLKLIGNSLTISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + D   KA E +   YN   + I FN K+L+E+++N+ SD++ 
Sbjct: 295 DVDFANKAEERLPCEYNGTDLQIGFNSKFLIEMLNNLQSDDIT 337


>gi|320162114|ref|YP_004175339.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1]
 gi|319995968|dbj|BAJ64739.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1]
          Length = 378

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 179/348 (51%), Gaps = 11/348 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV +  +   LG   R +  ++T+PV  +VLL  ++G L + A+  E+ I+  + A 
Sbjct: 6   MKVTVSQQHLAHGLGLVSRAVAPRSTLPVLGNVLLATDEGRLRLAATNLELGISCWLGAQ 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A L  D++  L +  ++     N     +++  G S+  L+    +EFP 
Sbjct: 66  IQEEGSITVPARLFADLIGTLPN--EMIHLAVNPRSMALSVKCGSSSTELKGIDAAEFPP 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +  +   L  +  K ++++  FA +TEE R  L G+   I+ +++ L A  TDG R
Sbjct: 124 VPAVDSDHGVLLPVADFKEMIQQVAFAASTEEARPVLQGVQMVISGDEISLAA--TDGFR 181

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           ++V ++ +   +A+  S+I+P +A+ E+ RI    +  + V     ++   +E+L ++ +
Sbjct: 182 ISVRQMRLSEPVAQPISVIIPARALQELARIAQEGEVRLIVPPGRGQVVFQMENLQLTSQ 241

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----VRIQAVKLSLSSDKL 295
           LIDG FP+Y+ ++P S      V+   L +AV +  I++      VR+   K      ++
Sbjct: 242 LIDGNFPDYKVILPRSYKTHTIVSTEALLKAVKQAEIIARMGNGVVRLHLQKFDDRPGQI 301

Query: 296 CMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
            ++  + + G A ES+     E P + I FN K+L E ++ I +  +V
Sbjct: 302 EISAQSEETG-ANESLVDANIEGPTLAIAFNVKFLREALEVIKTPNLV 348


>gi|255533120|ref|YP_003093492.1| DNA polymerase III subunit beta [Pedobacter heparinus DSM 2366]
 gi|255346104|gb|ACU05430.1| DNA polymerase III, beta subunit [Pedobacter heparinus DSM 2366]
          Length = 374

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 173/343 (50%), Gaps = 6/343 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  DG L I A+  +  +T ++P  
Sbjct: 1   MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGNLTISATDLQTSMTTSLPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V A +L D ++ L D  Q   F  ++    + IS GD  + L      +FP 
Sbjct: 61  SKEGGKVAVPARILLDTLKTLPD--QPISFNIDDSTFSIEISAGDGKYKLSGENGDDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L +SVL   + +T FA++++E+R  + G+F  ++++ +    VATD H+
Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSSDELRPAMTGVFCQLSDQHITF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    + ++  K  S I+P+KA+  +   L S D +V V  + +      E++++  R
Sbjct: 177 L-VRYRRMDSKADKSSSFILPKKALTLLKAALPSTDINVSVDYNATSAFFKFENINLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++       + RV I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + D   +A E ++  Y    ++I FN K+L+E++ N+S +EV 
Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNAKFLIEMLSNLSGEEVT 338


>gi|311032257|ref|ZP_07710347.1| DNA polymerase III subunit beta [Bacillus sp. m3-13]
          Length = 378

 Score =  132 bits (331), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 91/355 (25%), Positives = 185/355 (52%), Gaps = 20/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R  +++ +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MKFIIQRDKLVQSVQDVLKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPCE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GS+ + A    +I++KL  D  +I    +N+  T   I  G S F L 
Sbjct: 61  EDGSENVEVKTAGSVVLQARFFSEIIKKLPMDTVEIEV--QNQYVT--TIRSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E    F + + +LKN++ +T FA++T E R  L G+ + +  E+ +L
Sbjct: 117 GQDAAEYPHLPQVEEQNVFRVPTDLLKNIIRQTVFAVSTSETRPILTGVNWKL--ENHEL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATD HRLA+ +  + A+     ++++P K++ E+ +IL   +  + + ++E+++   
Sbjct: 175 ICIATDSHRLALRKAKVEAENDITCNVVIPGKSLNELNKILDDTNELLDIVVTENQVLFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
            +++    RL+DG +P+   +IP  +  ++ V      QA+DR S+++   R   VKL +
Sbjct: 235 AKNILFFSRLLDGNYPDTSRLIPAESKTDITVTTKEFLQAIDRASLLAREGRNNVVKLAT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           L SD L ++ ++P++GK +E +  N    E  + I F+ KY+++ +  +  +E++
Sbjct: 295 LESDTLEVSSNSPEVGKVVEQVQSNSIDGE-ELKISFSAKYMMDALKALEGNEIL 348


>gi|116332683|ref|YP_794210.1| DNA polymerase sliding clamp subunit [Lactobacillus brevis ATCC
           367]
 gi|116098030|gb|ABJ63179.1| DNA polymerase III, beta subunit [Lactobacillus brevis ATCC 367]
          Length = 379

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 95/340 (27%), Positives = 170/340 (50%), Gaps = 16/340 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ R+  ++ L +  R I  K TIP+   + + A+D  L +  S  +I I   I A 
Sbjct: 1   MKFTINRAAFIKELNNVSRAISSKTTIPILTGLKIVASDAGLLLTGSNADISIETLIRAD 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 ++D  GSI ++A    +IV++L +       K+   G +  I+ G + F +   
Sbjct: 61  NPDVGLTIDEPGSIVLTARFFSEIVKRLPEKEMTVEVKD---GFQTEITSGAAAFNINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   S  L+ +V K L+ +T  A++ +E R  L GI F +N  D +  A
Sbjct: 118 DANNYPHLPEIDAADSIVLSGAVFKELISQTVIAVSNQESRPILTGIHFVLN--DNQFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  ++++         +I+P K++ E+ R++   D+ VK+  SE+++   + 
Sbjct: 176 VATDSHRLSQRQIELSTPSEASFDVIIPGKSLTELSRMIGDDDADVKMQFSENQVLFLLG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
             S   RL++G +P+   +IP  +   +      L  AV+R S++S   R   VKL+L+ 
Sbjct: 236 DTSFYSRLLEGNYPDTSRLIPKESSTTVEFEAPELLAAVERASLLSHESRNNVVKLTLTP 295

Query: 293 DKLCMTV--DNPDMGKAIESMNVY-YNECPMDICFNYKYL 329
               +T+  ++PD+G   E +        P++I FN  Y+
Sbjct: 296 TDHQVTIFSNSPDVGNVEEELAPKEIGGEPLEISFNPDYM 335


>gi|304315539|ref|YP_003850684.1| DNA polymerase III subunit beta [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777041|gb|ADL67600.1| DNA polymerase III, beta subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 370

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 96/344 (27%), Positives = 177/344 (51%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ++  +L  +    + +  + T+P+   +LL A D  L + ++  EI I   + A 
Sbjct: 1   MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLTAKDNKLVMYSTDMEIGIECKVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI VS+ +  D+VRKL +   I F  + +    VNI  G S F +      EFP 
Sbjct: 61  IVEEGSIVVSSKVFSDLVRKLPENT-IYFTTDQDYI--VNIKCGLSEFTISGNSSEEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +F +  +VLK +++ T F +A +  R  L GI   I++  + +  VA DG+R
Sbjct: 118 IPEVLKEITFSINQNVLKEMIKMTSFCVAQDMTRPILTGILMEISKNTINM--VALDGYR 175

Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +A+ +    D++ +     S+++P     E++RI+   D +V VS + ++I   I    +
Sbjct: 176 MAIKKYISEDLLLKEFDDFSVVIPGTTANELVRIMEDNDDNVYVSFTGNQILFEINDTKV 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L+DG + NY+ VIP      + +   +L  A+DR S+++S +   +K + +  +L +
Sbjct: 236 ISKLLDGNYMNYKAVIPKDFKSIVIIEKDDLIGAIDRASLLASNKSNLIKFTFNERELII 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +  N + GK  E +N+      ++I FN +YLLE +  I S+++
Sbjct: 296 S-SNSEKGKMSERVNIDIEGNLIEIAFNSRYLLEALRVIDSEKI 338


>gi|187933007|ref|YP_001884267.1| DNA polymerase III subunit beta [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721160|gb|ACD22381.1| DNA polymerase III, beta subunit [Clostridium botulinum B str.
           Eklund 17B]
          Length = 366

 Score =  131 bits (330), Expect = 1e-28,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 190/381 (49%), Gaps = 25/381 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E+  +L+ +    + I  K+T+ V   + + A +  L +  S  ++ I   + A V   G
Sbjct: 6   EKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVNADVLDKG 65

Query: 66  SITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
            I + A +  +I+RKL +   +I   KE+     + I+   S F +      EFPS    
Sbjct: 66  EIVIDAKIFGEIIRKLPNSDIKIETVKEDV----IQITCEKSVFNVVCMNAEEFPSLPNI 121

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
                 E+  S+LKN+++ T F++A +E R  L GI F + + +L L  VA DG+RLA+ 
Sbjct: 122 NEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRNLNL--VALDGYRLAIR 179

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
              +   I     +++P K + E+ +IL   D +V ++ + + I  N+E+  +  RL+DG
Sbjct: 180 SEFLDNDIN--LEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISRLLDG 237

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPD 303
           +F NY +++P  +   + V     +  ++R S+M+       + L L  + L +T  N  
Sbjct: 238 KFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIIT-SNSQ 296

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
           +GK  E +++      ++I FN +YLL+++ N+ S     DEV+  + S  S   I+ KD
Sbjct: 297 LGKVREEVSINLQGDEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVIKEKD 351

Query: 364 KDSKNNKDNKVNAFYVLMPMR 384
            +         N+ Y+++P+R
Sbjct: 352 GE---------NSQYLVLPVR 363


>gi|303228573|ref|ZP_07315400.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516752|gb|EFL58667.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 373

 Score =  131 bits (330), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   ++++ + +    ++ + K +  +   + +   +  +E++ +  E+ I   I A 
Sbjct: 1   MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
           +   G++ V++    +++RKL  G  I   K  E G  + I+ G S F L +    +F  
Sbjct: 61  ILEPGTLVVASRYFQELIRKLP-GETIQLSKP-EDGNTLKITSGSSEFNLVTLHPDDFSL 118

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVAT 176
                +++YV    + S  +K L++ T++A A+++ R    G    I +  D ++  VAT
Sbjct: 119 VEQIHDQDYV---NIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESL 235
           D HR+AV +V I         +I+P KA+ E+ R+L + + S+ K+  + ++I    ES+
Sbjct: 176 DTHRMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESI 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDK 294
            +  RLI+G +P Y+ VIP   D    V+  +   AVDRVS+++  +    ++   S ++
Sbjct: 236 YIISRLIEGTYPEYEKVIPAQFDSSAVVDRKDFAGAVDRVSLLAKDMSYNVIRYDWSEEQ 295

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N
Sbjct: 296 VTLSSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTGDN------IHMYLKQN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V IR         +DN  N  YV+ P+R
Sbjct: 350 GPVVIR---------QDNNPNYTYVVTPVR 370


>gi|227550641|ref|ZP_03980690.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257896288|ref|ZP_05675941.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|293379369|ref|ZP_06625513.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1]
 gi|227180242|gb|EEI61214.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257832853|gb|EEV59274.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|292641892|gb|EFF60058.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1]
          Length = 376

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 170/338 (50%), Gaps = 15/338 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T+ R+  ++ L    R I  K TIP+   V +      L +  S  +I I   +   
Sbjct: 1   MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + A    +I+R+L +        EN+   +V I+ G +NF +   
Sbjct: 61  NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     +L   VL  L+  T FA++  E R  L G+ F ++  D  L A
Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   V  V Q A    I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLS-QRVIPVEQTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +  +   A++R S++S   R   V+LS+  
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYL 329
           D + +  ++P++GK  ES++    N  P++I FN  Y+
Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASNGDPLEISFNPDYM 332


>gi|69246707|ref|ZP_00604075.1| DNA polymerase III, beta chain [Enterococcus faecium DO]
 gi|257878647|ref|ZP_05658300.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933]
 gi|257881313|ref|ZP_05660966.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502]
 gi|257885588|ref|ZP_05665241.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501]
 gi|257890530|ref|ZP_05670183.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410]
 gi|257893105|ref|ZP_05672758.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408]
 gi|258615269|ref|ZP_05713039.1| DNA polymerase III, beta subunit [Enterococcus faecium DO]
 gi|260558228|ref|ZP_05830424.1| DNA polymerase subunit III [Enterococcus faecium C68]
 gi|261206918|ref|ZP_05921607.1| DNA polymerase subunit III [Enterococcus faecium TC 6]
 gi|289566505|ref|ZP_06446929.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF]
 gi|293553548|ref|ZP_06674175.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039]
 gi|293563252|ref|ZP_06677704.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162]
 gi|293569158|ref|ZP_06680464.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071]
 gi|294616658|ref|ZP_06696429.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636]
 gi|294619746|ref|ZP_06699151.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679]
 gi|294623760|ref|ZP_06702588.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317]
 gi|314940130|ref|ZP_07847310.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04]
 gi|314943039|ref|ZP_07849843.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C]
 gi|314948157|ref|ZP_07851553.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082]
 gi|314953429|ref|ZP_07856347.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A]
 gi|314993832|ref|ZP_07859168.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B]
 gi|314998143|ref|ZP_07863025.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01]
 gi|68195121|gb|EAN09580.1| DNA polymerase III, beta chain [Enterococcus faecium DO]
 gi|257812875|gb|EEV41633.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933]
 gi|257816971|gb|EEV44299.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502]
 gi|257821444|gb|EEV48574.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501]
 gi|257826890|gb|EEV53516.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410]
 gi|257829484|gb|EEV56091.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408]
 gi|260075402|gb|EEW63708.1| DNA polymerase subunit III [Enterococcus faecium C68]
 gi|260078546|gb|EEW66248.1| DNA polymerase subunit III [Enterococcus faecium TC 6]
 gi|289161714|gb|EFD09590.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF]
 gi|291588127|gb|EFF19969.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071]
 gi|291590478|gb|EFF22216.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636]
 gi|291594016|gb|EFF25485.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679]
 gi|291596714|gb|EFF27937.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317]
 gi|291602303|gb|EFF32528.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039]
 gi|291604791|gb|EFF34273.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162]
 gi|313587855|gb|EFR66700.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01]
 gi|313591723|gb|EFR70568.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B]
 gi|313594532|gb|EFR73377.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A]
 gi|313598239|gb|EFR77084.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C]
 gi|313640635|gb|EFS05215.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04]
 gi|313645411|gb|EFS09991.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082]
          Length = 376

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/338 (28%), Positives = 170/338 (50%), Gaps = 15/338 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T+ R+  ++ L    R I  K TIP+   V +      L +  S  +I I   +   
Sbjct: 1   MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + A    +I+R+L +        EN+   +V I+ G +NF +   
Sbjct: 61  NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     +L   VL  L+  T FA++  E R  L G+ F ++  D  L A
Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DNSLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   V  V Q A    I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLS-QRVIPVEQAADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +  +   A++R S++S   R   V+LS+  
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
           D + +  ++P++GK  ES++   +   P+DI FN  Y+
Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLDISFNPDYM 332


>gi|89101118|ref|ZP_01173954.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
 gi|89084173|gb|EAR63338.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
          Length = 378

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 177/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  +++ +    + +  + TIP+   + + A++  + +  S  +I I   IP  
Sbjct: 1   MKFQIQRDSLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI + A    +IV+KL  D  +I    +N L T   I  G S F L 
Sbjct: 61  SDGNEIVEISRTGSIVLQAKFFSEIVKKLPTDKVEIDV--QNHLQT--VIRSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   +      F + + +LK +V +T FA++T E R  L G+ + +  ED +L
Sbjct: 117 GLDAEEYPHLPQLSEEKIFRIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--EDAEL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATD HRLA+ +  +  +  +  ++++P K++ E+ +IL   +  + + ++E+++   
Sbjct: 175 TCIATDSHRLALRKAKVETEANESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E+L    RL++G +P+   +IP  +  E+ +      QA+DR S+++   R   VK S 
Sbjct: 235 AENLLFFSRLLEGNYPDTTRLIPNESKTEIGMQTKEFLQAIDRASLLAREGRNNVVKFST 294

Query: 291 SSDKLC-MTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
             D +  ++ + P++GK +E +   + E   + I F+ KY+++ +  +   E+
Sbjct: 295 IEDGVVEISSNTPEIGKVVEEVQSQFIEGEDLKISFSAKYMMDALKALEGTEI 347


>gi|332665319|ref|YP_004448107.1| DNA polymerase III subunit beta [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334133|gb|AEE51234.1| DNA polymerase III, beta subunit [Haliscomenobacter hydrossis DSM
           1100]
          Length = 372

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/344 (28%), Positives = 172/344 (50%), Gaps = 10/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V  S++L+ L  A   I     +P+    L    D  L I A+  +  IT  +   
Sbjct: 1   MKFSVSSSELLKQLQVAAGSIGSNPVLPILEDFLFSIADNKLTISATDLDTAITTQMDVM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I V A +L D ++ L          EN    E+  ++G   + L      +FP+
Sbjct: 61  ADTDGTIAVPAKILLDTLKALPQQPITFSIDENTFAIEITSAYG--KYRLSGENGQDFPA 118

Query: 121 TKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E E    +  + S+ L   V +T FA + +E+R  + G++F ++    K+  VATD H
Sbjct: 119 IPEPEAEDDTITIPSNALIQGVNKTLFATSNDELRLAMMGVYFQVDFS--KITMVATDAH 176

Query: 180 RLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +L      D+ ++++   S I+P+KA+  I  +L + D  VK+S +++    +  +  +S
Sbjct: 177 KLVRYTFTDLSSEVST--SFILPKKALNLIKNVLPAGDE-VKMSFNKANAFFSFGNTQIS 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLID  +P+Y  VIP  N   L V+  +   ++ R++I ++     V L++S   L ++
Sbjct: 234 CRLIDSRYPDYHAVIPVDNPFLLTVSRADFASSLKRIAIYANKTTNQVILNISPGNLIVS 293

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             + D   +A E ++  Y+  P+ I FN K+LLE+++ + SDEV
Sbjct: 294 AQDLDFSNEATEKLSCTYDGDPLMIGFNAKFLLEMLNVLESDEV 337


>gi|257866277|ref|ZP_05645930.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30]
 gi|257873207|ref|ZP_05652860.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10]
 gi|257875894|ref|ZP_05655547.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20]
 gi|325567640|ref|ZP_08144307.1| DNA-directed DNA polymerase III beta subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|257800235|gb|EEV29263.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30]
 gi|257807371|gb|EEV36193.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10]
 gi|257810060|gb|EEV38880.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20]
 gi|325159073|gb|EGC71219.1| DNA-directed DNA polymerase III beta subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 376

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 90/338 (26%), Positives = 175/338 (51%), Gaps = 15/338 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T+ R++ ++ L    R I  K TIP+   V L  ++  L +  S  +I I   +   
Sbjct: 1   MKLTLNRTEFMQELQTVQRAISTKTTIPILTGVKLSLSEKGLTMTGSNADISIETFLSVE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +IVR+L +        +N    +V I+ G +NF +   
Sbjct: 61  NEKAQMQIEKTGAIVLQARFFSEIVRRLPESTLTLEVLDN---NQVAITSGKANFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E   S E+ + VL  +V  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADSYPHLPVVESQDSIEIPAHVLNKVVSETVFAVSQHESRPILTGVHFVL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + +      +I++P K++ E+ R L+ ++ ++++S+ ++++    +
Sbjct: 176 VATDSHRLSQRVIPLESGETAF-NIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTK 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +   L QA++R S++S   R   V+L++S 
Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLQAIERASLLSHEGRNNIVRLAISE 294

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYL 329
           + + +  ++P++GK  E ++       P++I FN  Y+
Sbjct: 295 EAVVLYGNSPEIGKVEEDLSFEKVTGDPLEISFNPDYM 332


>gi|29374663|ref|NP_813815.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583]
 gi|227518107|ref|ZP_03948156.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104]
 gi|227555686|ref|ZP_03985733.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22]
 gi|229547128|ref|ZP_04435853.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322]
 gi|229550698|ref|ZP_04439423.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200]
 gi|255971550|ref|ZP_05422136.1| DNA polymerase subunit III [Enterococcus faecalis T1]
 gi|255974523|ref|ZP_05425109.1| DNA polymerase subunit III [Enterococcus faecalis T2]
 gi|256618526|ref|ZP_05475372.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200]
 gi|256761855|ref|ZP_05502435.1| DNA polymerase subunit III [Enterococcus faecalis T3]
 gi|256854982|ref|ZP_05560343.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|256957014|ref|ZP_05561185.1| DNA polymerase subunit III [Enterococcus faecalis DS5]
 gi|256960823|ref|ZP_05564994.1| DNA polymerase subunit III [Enterococcus faecalis Merz96]
 gi|256963984|ref|ZP_05568155.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704]
 gi|257078691|ref|ZP_05573052.1| DNA polymerase subunit III [Enterococcus faecalis JH1]
 gi|257081348|ref|ZP_05575709.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol]
 gi|257084005|ref|ZP_05578366.1| DNA polymerase subunit III [Enterococcus faecalis Fly1]
 gi|257087835|ref|ZP_05582196.1| DNA polymerase subunit III [Enterococcus faecalis D6]
 gi|257088487|ref|ZP_05582848.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188]
 gi|257417427|ref|ZP_05594421.1| DNA polymerase subunit III [Enterococcus faecalis AR01/DG]
 gi|257418841|ref|ZP_05595835.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257421344|ref|ZP_05598334.1| DNA polymerase III subunit beta [Enterococcus faecalis X98]
 gi|293382661|ref|ZP_06628589.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712]
 gi|293387927|ref|ZP_06632463.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613]
 gi|294781249|ref|ZP_06746596.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1]
 gi|300862250|ref|ZP_07108330.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268917|ref|ZP_07550281.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248]
 gi|307274013|ref|ZP_07555223.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855]
 gi|307276498|ref|ZP_07557618.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134]
 gi|307284060|ref|ZP_07564230.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860]
 gi|307287181|ref|ZP_07567252.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109]
 gi|307296591|ref|ZP_07576411.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411]
 gi|312901295|ref|ZP_07760578.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470]
 gi|312903108|ref|ZP_07762289.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635]
 gi|312908813|ref|ZP_07767752.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512]
 gi|312951719|ref|ZP_07770613.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102]
 gi|312979545|ref|ZP_07791227.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516]
 gi|29342121|gb|AAO79887.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583]
 gi|227074441|gb|EEI12404.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104]
 gi|227175196|gb|EEI56168.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22]
 gi|229304131|gb|EEN70127.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200]
 gi|229307710|gb|EEN73697.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322]
 gi|255962568|gb|EET95044.1| DNA polymerase subunit III [Enterococcus faecalis T1]
 gi|255967395|gb|EET98017.1| DNA polymerase subunit III [Enterococcus faecalis T2]
 gi|256598053|gb|EEU17229.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200]
 gi|256683106|gb|EEU22801.1| DNA polymerase subunit III [Enterococcus faecalis T3]
 gi|256709495|gb|EEU24542.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|256947510|gb|EEU64142.1| DNA polymerase subunit III [Enterococcus faecalis DS5]
 gi|256951319|gb|EEU67951.1| DNA polymerase subunit III [Enterococcus faecalis Merz96]
 gi|256954480|gb|EEU71112.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704]
 gi|256986721|gb|EEU74023.1| DNA polymerase subunit III [Enterococcus faecalis JH1]
 gi|256989378|gb|EEU76680.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol]
 gi|256992035|gb|EEU79337.1| DNA polymerase subunit III [Enterococcus faecalis Fly1]
 gi|256995865|gb|EEU83167.1| DNA polymerase subunit III [Enterococcus faecalis D6]
 gi|256997299|gb|EEU83819.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188]
 gi|257159255|gb|EEU89215.1| DNA polymerase subunit III [Enterococcus faecalis ARO1/DG]
 gi|257160669|gb|EEU90629.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257163168|gb|EEU93128.1| DNA polymerase III subunit beta [Enterococcus faecalis X98]
 gi|291079967|gb|EFE17331.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712]
 gi|291082664|gb|EFE19627.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613]
 gi|294451712|gb|EFG20167.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1]
 gi|295112342|emb|CBL30979.1| DNA polymerase III, beta subunit [Enterococcus sp. 7L76]
 gi|300848775|gb|EFK76532.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495927|gb|EFM65515.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411]
 gi|306501779|gb|EFM71070.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109]
 gi|306503431|gb|EFM72680.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860]
 gi|306506825|gb|EFM75975.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134]
 gi|306509321|gb|EFM78381.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855]
 gi|306514725|gb|EFM83276.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248]
 gi|310625251|gb|EFQ08534.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512]
 gi|310630292|gb|EFQ13575.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102]
 gi|310633499|gb|EFQ16782.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635]
 gi|311287727|gb|EFQ66283.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516]
 gi|311291672|gb|EFQ70228.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470]
 gi|315026676|gb|EFT38608.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2137]
 gi|315030121|gb|EFT42053.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4000]
 gi|315033556|gb|EFT45488.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0017]
 gi|315036379|gb|EFT48311.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0027]
 gi|315143594|gb|EFT87610.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2141]
 gi|315148268|gb|EFT92284.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4244]
 gi|315151292|gb|EFT95308.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0012]
 gi|315153718|gb|EFT97734.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0031]
 gi|315155122|gb|EFT99138.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0043]
 gi|315158748|gb|EFU02765.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0312]
 gi|315163332|gb|EFU07349.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0645]
 gi|315165727|gb|EFU09744.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1302]
 gi|315168221|gb|EFU12238.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1341]
 gi|315170512|gb|EFU14529.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1342]
 gi|315174181|gb|EFU18198.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1346]
 gi|315573990|gb|EFU86181.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309B]
 gi|315578840|gb|EFU91031.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0630]
 gi|315581941|gb|EFU94132.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309A]
 gi|323479241|gb|ADX78680.1| DNA polymerase III, beta subunit [Enterococcus faecalis 62]
          Length = 376

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 17/339 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV+RS  L+ L    R I  K TIP+   V +  ++  L +  S  +I I   +   
Sbjct: 1   MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  GSI + +    +I+RKL +     F  E     +V I+ G ++F +   
Sbjct: 61  DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDM---FTMEVLDNNQVAITSGKADFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     +L   +L  ++  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   V    Q  +  +I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLS-QRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S++ ++      L  A++R S++S   R   V+LS+S 
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYL 329
           D + +  ++P++GK  E++N Y N     +DI FN  Y+
Sbjct: 295 DSVVLYGNSPEIGKVEEALN-YENVSGEALDISFNPDYM 332


>gi|154684520|ref|YP_001419681.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens FZB42]
 gi|154350371|gb|ABS72450.1| DnaN [Bacillus amyloliquefaciens FZB42]
          Length = 378

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 183/344 (53%), Gaps = 20/344 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL   A +    +N+  T   I  G + F L  
Sbjct: 61  DDDKEIVTIDQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++  E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+  A++DI    +   ++++P K++ E+ +IL      V + ++E+++  
Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDNQELVDIVITETQVLF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS
Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLS 293

Query: 290 LS-SDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLE 331
              +D L ++ ++P++GK +E+ +    +   ++I F+ KY+++
Sbjct: 294 AKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMD 337


>gi|295402122|ref|ZP_06812081.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109153|ref|YP_003987469.1| DNA polymerase III subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294975805|gb|EFG51424.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214254|gb|ADP72858.1| DNA polymerase III, beta subunit [Geobacillus sp. Y4.1MC1]
          Length = 378

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 178/356 (50%), Gaps = 24/356 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKIT++R  +++ +    + +  + TIP+   + + A    + +  S  +I I   IP  
Sbjct: 1   MKITIDREALVQSVQDVMKAVSPRTTIPILTGIKITATPQGVTLTGSDSDISIESFIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNF 108
                   +   GSI + A    +IV+KL +       K  E+  + N    I  G + F
Sbjct: 61  DEDKVLVEIAETGSIVLQARFFSEIVKKLPE-------KTVEIEVQPNFLTVIRSGKAEF 113

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L      E+P   + E    FE+ + +LK ++ +T FA++  E R  L G+ + I +E+
Sbjct: 114 SLNGLDAEEYPRLPQIEEENVFEIPTDLLKTIIRQTVFAVSVSETRPILTGVNWRIEDEE 173

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           L +C  ATD HRLA+ +  I  +  +  ++++P K++ E+ +IL   ++ VK+ ++ ++I
Sbjct: 174 L-ICT-ATDSHRLALRKAKIETENHQSHNVVIPGKSLNELSKILDDSNAPVKIVITANQI 231

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL+DG +P    +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 232 LFKTKRLLFFSRLLDGNYPETSRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNVVK 291

Query: 288 LSLSSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           L+  SD +  ++  +P++GK  E +     E   + I F+ KY+++ +  +   ++
Sbjct: 292 LTTLSDGIIEISSVSPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTDI 347


>gi|88608357|ref|YP_506066.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600526|gb|ABD45994.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 372

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 108/389 (27%), Positives = 190/389 (48%), Gaps = 35/389 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +TV++  +  +L +   +  RK+TI    HV ++     +E+  +  E+ +T ++     
Sbjct: 9   VTVQQDALTRILANLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68

Query: 63  VCGS-ITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V  + I+V A  LY+IV++L    G  +S  K N +     I      F L       FP
Sbjct: 69  VIDAVISVDAFRLYEIVKRLPTDVGVVLSIEKNNLVVRSRRI-----EFSLPYLDAKHFP 123

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              EEE +     A   +++L  +  FA +TE  R +LNG++F  + E  K+   ATD H
Sbjct: 124 LISEEEKIGQINFAVDEIRSLFNKVRFATSTESTRQHLNGVYFESDGE--KITVAATDVH 181

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237
           RLAVA   ++ +     S I+P+K V E++++ S K+  + +   E  SRI +    + +
Sbjct: 182 RLAVA--TLMKKTGLKFSCIIPKKTVLEMIKLSSGKEVELFLHGREYVSRIKMVFGGVRL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI G FPN+  VIP S    L  +   L  +++RV ++S  + +A+ + +   +L +
Sbjct: 240 NSKLIAGTFPNFAAVIPHSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299

Query: 298 TVDNPDMGKAIESMNVYYNEC---PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
              N D     ES+ +  NE     + I FN+ YLL+I+  +      + EV  + +++ 
Sbjct: 300 DASNSDASFGRESLEL--NEDIGEEISIYFNHIYLLDILLALD-----NKEVTMKFNNAT 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S V  +G +           +A YV+MPM
Sbjct: 353 SQVLFQGDE-----------SALYVVMPM 370


>gi|218261816|ref|ZP_03476531.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223762|gb|EEC96412.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii
           DSM 18315]
          Length = 374

 Score =  131 bits (329), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 97/349 (27%), Positives = 172/349 (49%), Gaps = 16/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  + +L  L    ++I  KN++P+    L       L I AS  E  +      S
Sbjct: 1   MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLV----TS 56

Query: 61  VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           VDV      G   VSA +L D +++L +        ++ L   ++  +G  NF  Q    
Sbjct: 57  VDVMNAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK--G 114

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             +P  K   +   S  + + +L N + R  FA A +E+R  +NGI+F I+ +DL    V
Sbjct: 115 DTYPQQKPLNDNAISIMMDAQMLLNGISRALFATADDELRPVMNGIYFDIHTDDLTF--V 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+DGH+L V   ++  +  +  S I+P+K    +  +LS ++  + +   ++  ++N  +
Sbjct: 173 ASDGHKL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEEGMISIKFDDNNAYVNCAN 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             M  RLI+G +PNY +VIP  N  ++ ++  +   A+ RVS+ S+     VKL L   +
Sbjct: 232 FEMVCRLIEGRYPNYNSVIPQENPFKVTIDRVSFLNALKRVSVFSNPASSLVKLQLKESE 291

Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + ++  + D   + E   V  ++   + I F   YL+EI+ NI+S+EV+
Sbjct: 292 MLVSAQDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINSEEVI 340


>gi|308171893|ref|YP_003918598.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens DSM 7]
 gi|307604757|emb|CBI41128.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens DSM
           7]
          Length = 378

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 183/344 (53%), Gaps = 20/344 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL   A +    +N+  T   I  G + F L  
Sbjct: 61  EDDKEIVTIDQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRFGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++  E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+  A++DI    +   ++++P K++ E+ +IL      V + ++E+++  
Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDSQELVDIVITETQVLF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS
Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLS 293

Query: 290 LS-SDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLE 331
              +D L ++ ++P++GK +E+ +    +   ++I F+ KY+++
Sbjct: 294 AKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMD 337


>gi|328551702|gb|AEB22194.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens TA208]
 gi|328909961|gb|AEB61557.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens LL3]
          Length = 378

 Score =  130 bits (328), Expect = 2e-28,   Method: Compositional matrix adjust.
 Identities = 93/344 (27%), Positives = 183/344 (53%), Gaps = 20/344 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL   A +    +N+  T   I  G + F L  
Sbjct: 61  EDDKEIVTIDQPGSIVLQARFFSEIVKKLP-MATVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++  E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+  A++DI    +   ++++P K++ E+ +IL      V + ++E+++  
Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDSQELVDIVITETQVLF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS
Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLS 293

Query: 290 LS-SDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLE 331
              +D L ++ ++P++GK +E+ +    +   ++I F+ KY+++
Sbjct: 294 AKPADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMD 337


>gi|116071808|ref|ZP_01469076.1| DNA polymerase III subunit beta [Synechococcus sp. BL107]
 gi|116065431|gb|EAU71189.1| DNA polymerase III subunit beta [Synechococcus sp. BL107]
          Length = 385

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 180/357 (50%), Gaps = 19/357 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+   E E G +V ++    ++ ++  P  ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   ++ T FA + +E +  L G+    N + L+  A ATDG
Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227
           HRLAV +VD   Q A           ++ +P +++ E+ R+++   S   VSL   R   
Sbjct: 178 HRLAVLQVDDALQDAASASDDASEGFAVTLPARSLREVERLMAGWRSEDPVSLFCDRGQV 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           + L  + +  S R ++G +PNY  +IP   ++ L ++   L  A++R+++++      VK
Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVK 296

Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +   D+  + ++ D  D+G   ES+        + I FN +YLL+ +  + S+ VV
Sbjct: 297 FTSQPDEGVVQISADAQDVGSGSESLAASLTGDAIQIAFNVRYLLDGLKAMGSERVV 353


>gi|330719908|gb|EGG98380.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047]
          Length = 198

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 71/189 (37%), Positives = 111/189 (58%), Gaps = 12/189 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M+  + R D+++ L     ++ER+ T+PV  ++L+   DG L +  +  E+E+ G +   
Sbjct: 1   MRFAISREDLIKPLTLVAGVVERRQTLPVLSNILIVVEDGQLSLTGTDLEVELVGRVTLT 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G +TV A  L DI + L D AQI+   E++   ++ +  G S F L + P +
Sbjct: 61  EPAE---AGEVTVPARKLMDICKTLPDDAQITLQLEDD---KMILKSGRSRFSLTTLPAT 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FPS +E      F +  S LK L++RT  AMA +++RYYLNG+ F I  ++ KL AVAT
Sbjct: 115 DFPSVEESPQNLDFVVQQSELKRLIDRTSIAMAQQDVRYYLNGMLFEI--QNAKLRAVAT 172

Query: 177 DGHRLAVAE 185
           DGHRLA++E
Sbjct: 173 DGHRLAMSE 181


>gi|327533855|gb|AEA92689.1| DNA-directed DNA polymerase III beta subunit [Enterococcus faecalis
           OG1RF]
          Length = 376

 Score =  130 bits (328), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 96/339 (28%), Positives = 175/339 (51%), Gaps = 17/339 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV+RS  L+ L    R I  K TIP+   V +  ++  L +  S  +I I   +   
Sbjct: 1   MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  GSI + +    +I+RKL +     F  E     +V I+ G ++F +   
Sbjct: 61  DEKAQMTIEHTGSIVLQSRFFGEIIRKLPEDM---FTMEVLDNNQVAITSGKADFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     +L   +L  ++  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   V    Q  +  +I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLS-QRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S++ ++      L  A++R S++S   R   V+LS+S 
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYL 329
           D + +  ++P++GK  E++N Y N     +DI FN  Y+
Sbjct: 295 DSVVLYGNSPEIGKVEEALN-YENVSGEALDISFNPDYM 332


>gi|172056047|ref|YP_001812507.1| DNA polymerase III subunit beta [Exiguobacterium sibiricum 255-15]
 gi|171988568|gb|ACB59490.1| DNA polymerase III, beta subunit [Exiguobacterium sibiricum 255-15]
          Length = 377

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 97/361 (26%), Positives = 185/361 (51%), Gaps = 24/361 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M IT++R  +++ +    + +  + TIP+   + L+A+   + +  S  EI I   I A 
Sbjct: 1   MHITIQRDTLIQAIQDVAKAVSSRTTIPILTGIKLEAHGDGMTLTGSDTEISIERTIYAE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +V   GS+ ++A    DIV+KL     I     N +     I  G + F+L  
Sbjct: 61  ENGTSYVTVHRAGSVVLNARFFGDIVKKLPTDEVILEVSPNFM---TRIQSGTAEFHLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP   + +    F L + +L++++ +T FA+A +E R  L G+ F   ++D+  C
Sbjct: 118 LDPDEFPRLPQVDGGQQFRLPADLLRSMIRQTSFAVAVQETRPVLTGVNFSA-DKDILTC 176

Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
            V+TD HRLA+  A+ +   +I+   ++IVP K++ E+ ++LS  D  V ++++  +I  
Sbjct: 177 -VSTDSHRLALRRAQFETDNEIS-FQNVIVPGKSLNELSKLLS--DGHVDITITNQQILF 232

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
            ++ +    RL+DG +P+   +IP      +R+N   L QA+DR S+++   R   +K +
Sbjct: 233 KMKHVLFFSRLLDGNYPDTSRLIPEEYRTAVRMNAKELLQAIDRASLLAREDRNNVIKFA 292

Query: 290 L-SSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVV 347
              +  + ++  +P++GK  E +++   E   + I FN KY++   D + + +  D E+ 
Sbjct: 293 AEGTTAVEISSHSPEVGKVSEQVSILSLEGEELKISFNSKYMM---DALKALDATDIEIQ 349

Query: 348 F 348
           F
Sbjct: 350 F 350


>gi|313204262|ref|YP_004042919.1| DNA polymerase iii, beta subunit [Paludibacter propionicigenes WB4]
 gi|312443578|gb|ADQ79934.1| DNA polymerase III, beta subunit [Paludibacter propionicigenes WB4]
          Length = 378

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 168/348 (48%), Gaps = 10/348 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MK  V  +D+L  L    R+I  KN++P+  + L       L + AS  E   IT     
Sbjct: 1   MKFIVSSTDLLSHLQAISRVINNKNSLPILDNFLFHLEGKTLTMTASDIETTLITSMEVE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G + V++ LL D +R+  +        ++ L   +  ++G  NF  Q+    E+P
Sbjct: 61  SADGNGKVAVASRLLLDTLREFSEQPLTFSINDSNLAMVITSANGSYNFIGQN--GDEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              + ++   S  L  S L   + +T F  A +E+R  +NG+FF I  + L L  VATD 
Sbjct: 119 RLPQLQDDAQSLTLPVSTLSAGISKTLFCTADDELRPVMNGVFFDIVADSLTL--VATDA 176

Query: 179 HRLA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           H+L     +      +  +  + I+P+K    +  IL  +   V++       H  + + 
Sbjct: 177 HKLVRYKTSHTSASVEGEETVNFILPKKPANMLKNILPRESGEVEIRFDNKNAHFKLANY 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           +M  R ++G +PNY  VIP SN  ++ ++   L  A+ RVS+ ++     VKL+   +++
Sbjct: 237 TMICRQVEGRYPNYNGVIPKSNPFKIIIDRVTLLNALKRVSVFANQASNLVKLAFGQNQI 296

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++  + D    A E++   ++  P+ I F   +L+EI+ NI++ +++
Sbjct: 297 HISAQDIDFSISAEETITCQFDADPIKIGFKSSFLIEILGNINATDII 344


>gi|300362677|ref|ZP_07058853.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri
           JV-V03]
 gi|300353668|gb|EFJ69540.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri
           JV-V03]
          Length = 376

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 172/350 (49%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T+  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTK--IVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  +KV+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGESDPEIKVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK+SL     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMSLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E +     E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRASITDSII 345


>gi|224477955|ref|YP_002635561.1| DNA polymerase III subunit beta [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422562|emb|CAL29376.1| DNA polymerase III beta subunit [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 378

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 177/351 (50%), Gaps = 15/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R   +  L    + I  + T+P+   + + A +  + +  S  EI I  +IP  
Sbjct: 2   MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKEDEVILTGSDSEISIEISIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNAQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L   VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPQVSQDDAIQLPIKVLKNVIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +     ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKLEDEDIDNKNVIIPGKALAELNKIVSDSEDDINIFFASNQVLFKV 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
             ++   RL++G +P+   + P + + ++ ++ ++   A+DR S+++       +KLS  
Sbjct: 237 GHINFISRLLEGHYPDTSRLFPENYETKIEMSNSDFYHAIDRASLLAREGGNNVIKLSTG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           ++++ ++  +P++G   E +N    E   + I FN KY+++ +  I SDEV
Sbjct: 297 NEEVELSSTSPEIGTVKEDVNANDVEGSNLKISFNSKYMMDALKAIDSDEV 347


>gi|206900545|ref|YP_002251261.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739648|gb|ACI18706.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 367

 Score =  130 bits (327), Expect = 3e-28,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 185/389 (47%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ++ D+ + L      +  K TIP+  +V ++A +  L ++ +  E+ +  ++P  
Sbjct: 1   MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEVGLALSMPVI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + A L  D++ KL +     +  E        I  G S+  +Q     EFP 
Sbjct: 61  VEEPGEVCLPASLFIDVIGKLPEVTLEVYVNERNRAI---IHAGYSDIEIQGESPEEFPK 117

Query: 121 TKEEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +      Y   L   +    +++T FA A +EI+  L G+ F    +D KL  VA DGH
Sbjct: 118 VEVGNITEYHASLDRILFAKAIKQTIFAAAEDEIKQVLTGVLFE--GKDGKLNMVAVDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA+  ++I       PSIIVP K++ E  +I++   +  V ++  ++++  N   +   
Sbjct: 176 RLALKTLEIDKD---FPSIIVPAKSLKEWQKIITKALEDRVNIAALDNQVVFNCGEIYFI 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297
            RL+ G+FP Y  +IP       + N  +    ++R+ + + + +   VK+SLSS+++ +
Sbjct: 233 SRLLQGQFPAYDKIIPTEFTASFKANRKDFLDILERMEVFAEIDQTNTVKISLSSEEVVI 292

Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +    + G A E +    N +  ++I FN +YL++ +DN        DE+V +  S    
Sbjct: 293 STLPSERGFAKEVLPAEVNIDGNLEIGFNVEYLMDPLDNADW-----DEIVMKFTSDLGP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I   + +         N  Y+LMP+R+
Sbjct: 348 ALITSPEDE---------NYTYILMPVRL 367


>gi|319788989|ref|YP_004150622.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1]
 gi|317113491|gb|ADU95981.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1]
          Length = 364

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 113/401 (28%), Positives = 186/401 (46%), Gaps = 53/401 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V ++ I + +  A    +++  +P+  +VLL+A D LL + A+  EI I+  +  S
Sbjct: 1   MKIKVNKALIRDAVKVAASAADKRGNVPILSNVLLEAEDNLLRLVATNLEIGISTVVDCS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN---------FYLQ 111
           V+ CG  TV+A            G     F  +  G EV++S GDS          F L 
Sbjct: 61  VEECGKTTVNA------------GKAAKLFS-SITGEEVSLSAGDSKLVVETANSRFSLA 107

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK 170
           + P  EFP   E    +   L S  +   + +  +A + +E RY L G+ F  +N     
Sbjct: 108 TLPPEEFPEV-ELPQTFPVTLPSQEIDRAIRKVAYAASKDEARYILTGVLFRSVNG---A 163

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L AVATDGHRLA+ E+   AQ       I+P+K++ E+ ++L   +  V +  + ++++ 
Sbjct: 164 LHAVATDGHRLALYEISAAAQGVNS---IIPKKSLSELKKLLRESE-EVGIVETGNKLYF 219

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLS 289
           N     M   LI+GE+P+Y  VIP  N K L  +   L  A+  V+ I     ++    +
Sbjct: 220 NTGDTVMWTSLIEGEYPDYTAVIPEGNSKVLTADREELLSALKEVAVIFDKEEVRGAVFT 279

Query: 290 LSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           LS  KL +T    + G A E    ++ V Y+     I FN  +L+E + +       D E
Sbjct: 280 LSDGKLTITARKIE-GDAAEEAEVTIPVDYSGGEFQIGFNIVHLIESVGSF------DGE 332

Query: 346 VV-FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   ++   + V I   ++    N         V+MPM++
Sbjct: 333 TLKIAMEEPVTPVLITSPEEPQLTN---------VIMPMKV 364


>gi|329942797|ref|ZP_08291576.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10]
 gi|332287389|ref|YP_004422290.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC]
 gi|313847969|emb|CBY16966.1| DNA polymerase III, beta chain [Chlamydophila psittaci RD1]
 gi|325506563|gb|ADZ18201.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC]
 gi|328815057|gb|EGF85046.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10]
 gi|328914638|gb|AEB55471.1| DNA polymerase III, beta subunit [Chlamydophila psittaci 6BC]
          Length = 366

 Score =  130 bits (327), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS       G    I+ G S F L S  + +FP
Sbjct: 61  VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I   +     V TDG 
Sbjct: 117 MLPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTI--ANGTATVVGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  ++++    +     I+P KAV EI++ L S+DS   + L +++I +   +  +  
Sbjct: 175 RLAKTDIEVSLDKSFTGDYIIPIKAVEEIIK-LCSEDSEASIFLDQAKIAVECGNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   +   L ++   L   + +V++ ++    +VK + +  +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V      RL  S+S  + 
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   DS         + +V+MPMR+
Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363


>gi|257888094|ref|ZP_05667747.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733]
 gi|257899272|ref|ZP_05678925.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|293572719|ref|ZP_06683683.1| DNA polymerase III, beta subunit [Enterococcus faecium E980]
 gi|257824148|gb|EEV51080.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733]
 gi|257837184|gb|EEV62258.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|291607211|gb|EFF36569.1| DNA polymerase III, beta subunit [Enterococcus faecium E980]
          Length = 376

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 170/338 (50%), Gaps = 15/338 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T+ R+  ++ L    R I  K TIP+   V +      L +  S  +I I   +   
Sbjct: 1   MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + A    +I+R+L +        EN+   +V I+ G +NF +   
Sbjct: 61  NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     +L   VL  L+  T FA++  E R  L G+ F ++  D  L A
Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   V  V Q A    I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLS-QRVIPVEQTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +  +   A++R S++S   R   V+LS+  
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
           D + +  ++P++GK  ES++   +   P++I FN  Y+
Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLEISFNPDYM 332


>gi|282907049|ref|ZP_06314897.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282329948|gb|EFB59469.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           subsp. aureus Btn1260]
          Length = 377

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPGQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|205371911|ref|ZP_03224731.1| DNA polymerase III subunit beta [Bacillus coahuilensis m4-4]
          Length = 378

 Score =  130 bits (326), Expect = 4e-28,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 184/355 (51%), Gaps = 22/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++R ++++ +    + +  + TIP+   + + AN+  + +  S  +I I   IP  
Sbjct: 1   MKFTIQRDNLVQSIQDVMKAVSSRTTIPILTGIKMIANEEGVTLTGSDSDISIESYIPVE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQ 111
                 VDV   G + + A    +IV+KL  D  +I    +     +  I  G + F L 
Sbjct: 61  EEDQQIVDVQQSGGVVLQAKFFSEIVKKLPLDTVEIEVMGQ----YQTVIRSGKAEFNLN 116

Query: 112 SFPESEFP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
               +E+P   T EEE V  F++ + +LK L+ +T FA++T E R  L G+ + +  ++L
Sbjct: 117 GLDPAEYPHLPTIEEENV--FKVPTDLLKTLIRQTVFAVSTSETRPILTGVNWKVEHDEL 174

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             C +ATD HRLA+ +  I        ++++P K++ E+ +IL   +  V++ ++E+++ 
Sbjct: 175 N-C-IATDSHRLAMRKAKIELGSDASYNVVIPGKSLNELSKILDDNNELVEIVITENQVL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              + L    RL++G +P+   +IP     EL +   +  QA+DR S+++   R   VKL
Sbjct: 233 FKAKHLLFFSRLLEGNYPDTSRLIPTEKKTELELVTKDFLQAIDRASLLAREGRNNVVKL 292

Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           S L +  + ++ ++P++GK +E +     E   + I F+ KY+++ +  +   E+
Sbjct: 293 STLEAGSIEVSSNSPEIGKVVEEIQSGKVEGEELKISFSAKYMMDALKVLEGPEI 347


>gi|329312725|gb|AEB87138.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 377

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTSIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|320355369|ref|YP_004196708.1| DNA polymerase III subunit beta [Desulfobulbus propionicus DSM
           2032]
 gi|320123871|gb|ADW19417.1| DNA polymerase III, beta subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 376

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 88/345 (25%), Positives = 177/345 (51%), Gaps = 17/345 (4%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           + R D+L+ +G    I  +K T+ +  +VLL+     + +  +  EI +   +PA V   
Sbjct: 7   IGRDDLLKAIGAQQNITNKKGTLAILSNVLLEVQPDHIVLTGTDLEIGLKQRVPAEVLET 66

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS---T 121
           G++T+ A  L+++ R  + G+ I   KE +    V IS G S + L      EFPS    
Sbjct: 67  GTLTLPAKKLFEVAR--ESGSSILSLKELD-NNWVEISAGPSLYRLAGMVADEFPSFPAY 123

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATDG 178
            EE  V    + S +L +LV++T F++A + E  + L        + ++ + L  V +DG
Sbjct: 124 NEEAMVI---MESVILADLVDKTVFSIAQDKENMFTLTAAMLQKVMQDDHVMLKMVTSDG 180

Query: 179 HRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           HRL +   ++   + ++   P  ++PR+ V EI +   +K +S+   + E +  L  +  
Sbjct: 181 HRLTIMSKEVETSLEQLHLNPITLIPRRGVQEIRKFCENK-TSLSFGVEEKQAVLKSDDS 239

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            + +RL++G+FP++Q ++   S +  +R++     +++ R+++ +     A+K+ ++ + 
Sbjct: 240 LLIIRLMEGDFPDFQGLLSVLSKENSIRIDRIRFLESLKRINLFTEDLFHAIKMDIADNT 299

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           + +T  N D G A +  NV Y+  P+ + FN +Y +E +  +  D
Sbjct: 300 MVLTSQNADFGSAKDEFNVEYSGPPLTLGFNCRYFIETLQVMEGD 344


>gi|298693324|gb|ADI96546.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 377

 Score =  130 bits (326), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVIELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|188587627|ref|YP_001919467.1| DNA polymerase III subunit beta [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251779638|ref|ZP_04822558.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188497908|gb|ACD51044.1| DNA polymerase III, beta subunit [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243083953|gb|EES49843.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 366

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 103/381 (27%), Positives = 188/381 (49%), Gaps = 25/381 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E+  +L+ +    + I  K+T+ V   + + A +  L +  S  ++ I   + A V   G
Sbjct: 6   EKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVKADVLDKG 65

Query: 66  SITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
            I + A +  +I+RKL +   +I   KE+     + I+   S F +      EFPS    
Sbjct: 66  EIVIDAKIFGEIIRKLPNSDIKIETVKEDV----IQITCEKSVFNVVCMNAEEFPSLPNI 121

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
                 E+  S+LKN+++ T F++A +E R  L GI F + +  L L  VA DG+RLA+ 
Sbjct: 122 NEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRTLNL--VALDGYRLAIR 179

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
              +   I     +++P K + E+ +IL   D +V ++ + + I  N+E+  +  RL+DG
Sbjct: 180 SEFLDNDIN--LEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISRLLDG 237

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPD 303
           +F NY +++P  +   + V     +  ++R S+M+       + L L  + L +T  N  
Sbjct: 238 KFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIIT-SNSQ 296

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
           +GK  E + +      ++I FN +YLL+++ N+ S     DEV+  + S  S   I+ KD
Sbjct: 297 LGKVREEVLINLQGEEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVIKEKD 351

Query: 364 KDSKNNKDNKVNAFYVLMPMR 384
            +         N+ Y+++P+R
Sbjct: 352 GE---------NSQYLVLPVR 363


>gi|297570054|ref|YP_003691398.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925969|gb|ADH86779.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 376

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 108/393 (27%), Positives = 195/393 (49%), Gaps = 27/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +   V R D L  L     I  +K T+ V  ++LL+++   L + A+  E+ I   IPA 
Sbjct: 3   LAFNVSRLDFLTALAALQNITGKKGTLAVLANILLESDQEGLVMTATDLEVGIRCRIPAE 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+T+ A  L+++V++ ++        E +  + V IS   S+  L      EFPS
Sbjct: 63  ILSPGSVTLPARKLFELVKESEEK---HLHLEEQENSWVKISAESSDCRLSGISADEFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATD 177
                      + ++++ +L+++T +++A E E  + L GI     I +E   L  V++D
Sbjct: 120 FPPYREDNLVAIPTALMTDLIDKTIYSVAHEGENNFNLAGILLEKEILDEGHFLRMVSSD 179

Query: 178 GHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRL++ E  +   ++ +     I++P+K + EI R L  ++ +V + L E +  L    
Sbjct: 180 GHRLSMMEGKVETDLSSLEMDRVILIPKKGIQEI-RKLCDEEETVLLGLEEKQAVLKAGG 238

Query: 235 LSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            ++ VRL+ G+FP+Y+ +I   N  K + ++   +  ++ RV+I +  R  AV   + +D
Sbjct: 239 YTLVVRLMSGDFPDYKGIIQVINKAKHIGIDRRKMMHSLKRVNIFTEDRYNAVNFIIEND 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDS 352
           K+ ++  N D G A E +   Y    M+I FN KY  E +      +V+D E V   ++S
Sbjct: 299 KITLSSQNMDYGSAREEVPAGYQGESMEIGFNGKYFYEAL------QVMDSEKVKAYINS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S   ++G DKD             V+MPM++
Sbjct: 353 EESPCLLQG-DKDP--------GYLSVIMPMKL 376


>gi|89891238|ref|ZP_01202745.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria
           bacterium BBFL7]
 gi|89516550|gb|EAS19210.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria
           bacterium BBFL7]
          Length = 371

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 169/342 (49%), Gaps = 8/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S + + L     +I   NT+P+  + LL+ N   L++ AS  E  +  A+   
Sbjct: 1   MKFIVSSSYLQKHLQMLGGVINSNNTLPILDNFLLELNGKELKVSASDMETTMLTALEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GSI + A LL D ++   +   ++F  +N + T   +SH   +  +      EFP 
Sbjct: 61  SEDDGSIAIPAKLLLDTLKTFPE-QPLTFSADNGIMT---VSHDKGSSEIACANGEEFPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S  +    L   + +T FA   +++R  ++G+FF  + + L    VATD H+
Sbjct: 117 AVSLTDPSSTSILGDTLATAINKTIFAAGNDDLRPVMSGVFFQFSTDSLTF--VATDAHK 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     + +A  ++    I+P+K +  +  +L   ++ V +  +ES      +S S+  R
Sbjct: 175 LVRYRREDLAA-SETAEFIMPKKPLNLLKSMLQGSETEVLIEYNESNAQFTFDSTSIICR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +       +V RVSI S+     ++L ++  +L ++ +
Sbjct: 234 LIDGKYPNYEAVIPKENPNKLVIARNQFLNSVRRVSIFSNKTTHQIRLKMAGAELNISAE 293

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + D   KA E +   Y    M I FN ++L+E+++N++ D+V
Sbjct: 294 DIDYSNKADERLTCDYQGDDMQIGFNSRFLIEMLNNLNCDDV 335


>gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925707|ref|NP_373240.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus N315]
 gi|21281731|ref|NP_644817.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49482255|ref|YP_039479.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49484914|ref|YP_042135.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160973|ref|YP_492724.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88193825|ref|YP_498610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266449|ref|YP_001245392.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150392482|ref|YP_001315157.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220214|ref|YP_001331037.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156978333|ref|YP_001440592.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508268|ref|YP_001573927.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141517|ref|ZP_03566010.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253730401|ref|ZP_04864566.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733837|ref|ZP_04868002.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663936|ref|ZP_05143408.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424198|ref|ZP_05600627.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257426875|ref|ZP_05603277.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429511|ref|ZP_05605898.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432158|ref|ZP_05608521.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435119|ref|ZP_05611170.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|257793540|ref|ZP_05642519.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781]
 gi|258411154|ref|ZP_05681433.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763]
 gi|258420942|ref|ZP_05683876.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719]
 gi|258438581|ref|ZP_05689804.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299]
 gi|258443963|ref|ZP_05692301.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115]
 gi|258446221|ref|ZP_05694381.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300]
 gi|258449120|ref|ZP_05697226.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           A6224]
 gi|258451365|ref|ZP_05699396.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948]
 gi|258454402|ref|ZP_05702370.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937]
 gi|262049434|ref|ZP_06022306.1| DNA polymerase III beta chain [Staphylococcus aureus D30]
 gi|262051883|ref|ZP_06024098.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3]
 gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894281|ref|ZP_06302511.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117]
 gi|282902633|ref|ZP_06310526.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282910028|ref|ZP_06317836.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282912276|ref|ZP_06320072.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282912916|ref|ZP_06320708.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918070|ref|ZP_06325820.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|282920721|ref|ZP_06328440.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765]
 gi|282921292|ref|ZP_06329010.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922544|ref|ZP_06330234.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282927752|ref|ZP_06335366.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102]
 gi|283959486|ref|ZP_06376927.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284023039|ref|ZP_06377437.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus 132]
 gi|293497969|ref|ZP_06665823.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293511559|ref|ZP_06670253.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|294849830|ref|ZP_06790570.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|295406866|ref|ZP_06816670.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|295429299|ref|ZP_06821921.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275685|ref|ZP_06858192.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209450|ref|ZP_06925848.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297245901|ref|ZP_06929763.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|297589199|ref|ZP_06947840.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|300911474|ref|ZP_07128923.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379950|ref|ZP_07362679.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|60389826|sp|Q6GD88|DPO3B_STAAS RecName: Full=DNA polymerase III subunit beta
 gi|60389828|sp|Q6GKU3|DPO3B_STAAR RecName: Full=DNA polymerase III subunit beta
 gi|60392198|sp|P0A022|DPO3B_STAAM RecName: Full=DNA polymerase III subunit beta
 gi|60392199|sp|P0A023|DPO3B_STAAW RecName: Full=DNA polymerase III subunit beta
 gi|60392200|sp|P0A024|DPO3B_STAAU RecName: Full=DNA polymerase III subunit beta
 gi|60392205|sp|P99103|DPO3B_STAAN RecName: Full=DNA polymerase III subunit beta
 gi|81695636|sp|Q5HJZ4|DPO3B_STAAC RecName: Full=DNA polymerase III subunit beta
 gi|13699919|dbj|BAB41218.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           N315]
 gi|14245769|dbj|BAB56164.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21203166|dbj|BAB93867.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49240384|emb|CAG39030.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243357|emb|CAG41774.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285296|gb|AAW37390.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126947|gb|ABD21461.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87201383|gb|ABD29193.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|147739518|gb|ABQ47816.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149944934|gb|ABR50870.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373014|dbj|BAF66274.1| DNA polymerase III beta subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156720468|dbj|BAF76885.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367077|gb|ABX28048.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253725881|gb|EES94610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728140|gb|EES96869.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257273216|gb|EEV05318.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257276506|gb|EEV07957.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279992|gb|EEV10579.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257283037|gb|EEV13169.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285715|gb|EEV15831.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|257787512|gb|EEV25852.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781]
 gi|257840039|gb|EEV64504.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763]
 gi|257843132|gb|EEV67547.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719]
 gi|257848140|gb|EEV72132.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299]
 gi|257850847|gb|EEV74791.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115]
 gi|257855047|gb|EEV77990.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300]
 gi|257857553|gb|EEV80448.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           A6224]
 gi|257860895|gb|EEV83712.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948]
 gi|257863496|gb|EEV86256.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937]
 gi|259160210|gb|EEW45239.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3]
 gi|259162431|gb|EEW47001.1| DNA polymerase III beta chain [Staphylococcus aureus D30]
 gi|262073982|gb|ACY09955.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269939528|emb|CBI47886.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314765|gb|EFB45151.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315707|gb|EFB46091.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318355|gb|EFB48715.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|282323016|gb|EFB53335.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323972|gb|EFB54288.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282326094|gb|EFB56399.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282590512|gb|EFB95590.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102]
 gi|282594129|gb|EFB99117.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765]
 gi|282597092|gb|EFC02051.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763326|gb|EFC03456.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117]
 gi|283469231|emb|CAQ48442.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789078|gb|EFC27905.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815729|gb|ADC36216.1| DNA polymerase III beta subunit [Staphylococcus aureus 04-02981]
 gi|291096900|gb|EFE27158.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291465517|gb|EFF08049.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|294823378|gb|EFG39807.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|294968331|gb|EFG44356.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|295127058|gb|EFG56702.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296885911|gb|EFH24846.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297177266|gb|EFH36519.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|297577710|gb|EFH96423.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|300887653|gb|EFK82849.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302749913|gb|ADL64090.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304341530|gb|EFM07440.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312436857|gb|ADQ75928.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|312828565|emb|CBX33407.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129545|gb|EFT85537.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315195228|gb|EFU25616.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315197920|gb|EFU28253.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141419|gb|EFW33262.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144402|gb|EFW36167.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323439697|gb|EGA97415.1| DNA polymerase III subunit beta [Staphylococcus aureus O11]
 gi|323443270|gb|EGB00887.1| DNA polymerase III subunit beta [Staphylococcus aureus O46]
 gi|329725853|gb|EGG62332.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329731811|gb|EGG68171.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329732483|gb|EGG68833.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 377

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|91214601|ref|ZP_01251574.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755]
 gi|91187028|gb|EAS73398.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755]
          Length = 364

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 94/334 (28%), Positives = 167/334 (50%), Gaps = 14/334 (4%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L+ LG    +I   NT+P+  + L + +   L+I AS  E  +  A+       G I V 
Sbjct: 5   LQTLGG---VINNNNTMPILDNFLFELDHNSLKISASDLETTMCSALDVESSDQGKIAVP 61

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPSTKEEEYVYS 129
           A LL D ++   +   ++F K +    E++   G    Y  ++  +E FPS    E    
Sbjct: 62  ARLLLDTLKSFPE-QPLTFHKLDNHTIEISSEQGK---YALAYANAEDFPSPVSIEDPSQ 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA-VAEVDI 188
             L   +L   + +T FA   +++R  +NG+FF    E   L  V TD H+L   +  DI
Sbjct: 118 TILVGDILATAINKTIFATGNDDLRPVMNGVFFRFTPE--ALIFVGTDAHKLVKYSRTDI 175

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
            A   K    I+P+K +  +  +L   +  V++  +ES    + E+L ++ RL+DG++PN
Sbjct: 176 KAD--KPAEFIMPKKPLNLLKGVLLGSEEDVQIEFNESNAKFSFENLELTCRLVDGKYPN 233

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KA 307
           Y+ VIP  N   L ++ +    +V RVSI S+     ++L ++  +L ++ ++ D   KA
Sbjct: 234 YEAVIPQENPNTLTIDRSLFLSSVRRVSIFSNKTTHQIRLKIAGAELNISAEDLDYSNKA 293

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            E +   Y    + I FN K+L E+++N++S+++
Sbjct: 294 EERLTCDYQGDDLTIGFNSKFLTEMLNNLNSEDI 327


>gi|303230644|ref|ZP_07317394.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514699|gb|EFL56691.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 373

 Score =  129 bits (325), Expect = 5e-28,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   ++++ + +    ++ + K +  +   + +   +  +E++ +  E+ I   I A 
Sbjct: 1   MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V++    +++RKL  G  I   K  E G  + I+ G S F L +    +F  
Sbjct: 61  ILEPGTLVVASRYFQELIRKLP-GETIQLSKL-EDGNTLKITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVAT 176
            ++   ++YV    + S  +K L++ T++A A+++ R    G    I +  D ++  VAT
Sbjct: 119 VEQIHDQDYV---NIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESL 235
           D HR+AV +V I         +I+P KA+ E+ R+L + + S+ K+  + ++I    ES+
Sbjct: 176 DTHRMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESI 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDK 294
            +  RLI+G +P Y+ VIP   D    V+      AVDRVS+++  +    ++   S ++
Sbjct: 236 YIISRLIEGTYPEYEKVIPAQFDSSAVVDRKEFAGAVDRVSLLAKDMSYNVIRYDWSEEQ 295

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  N ++G A E + V +   P  I FN +Y+ +I+ + + D       +      N
Sbjct: 296 VTLSSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTGDN------IHMYLKQN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V IR         +DN  N  YV+ P+R
Sbjct: 350 GPVVIR---------QDNNPNYTYVVTPVR 370


>gi|239637287|ref|ZP_04678274.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603]
 gi|239597124|gb|EEQ79634.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603]
 gi|330685256|gb|EGG96917.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU121]
          Length = 377

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 186/376 (49%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I  +IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEISIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  IDGEDIVDISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKL-EDTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
             ++   RL++G +P+   + P + + +L +N      A+DR S+++       +KLS  
Sbjct: 236 GHVNFISRLLEGHYPDTTRLFPENYEIKLGINNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +     E   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 296 NEVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 352 -GTMKPFILKPKDDDS 366


>gi|302331774|gb|ADL21967.1| DNA-directed DNA polymerase beta subunit, DnaN [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 377

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLKL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|326390363|ref|ZP_08211922.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993640|gb|EGD52073.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW
           200]
          Length = 370

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 95/346 (27%), Positives = 178/346 (51%), Gaps = 12/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A    ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKSQVKFSGTDLDIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G I V A +  ++VRKL +G  +I    E++    VN+     NF +      EFP
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEGDVKI----ESDSQNTVNVVCDSINFTIAGSDALEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     SF+L  ++LK+L+ +T F +A E+ R  L G+ F + + ++K  AVA DG 
Sbjct: 117 EIPKVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGF 174

Query: 180 RLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           R+A+    +E     +  +  SI++P K + EI RIL  +++ +++  + +++   IE+ 
Sbjct: 175 RMAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENT 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +  DK 
Sbjct: 235 KVISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEI-GDKF 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                N + GK +E + V      ++I FN +YLL+ +  I  +E+
Sbjct: 294 ITVSSNSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAIDEEEI 339


>gi|311748577|ref|ZP_07722362.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1]
 gi|126577099|gb|EAZ81347.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1]
          Length = 374

 Score =  129 bits (325), Expect = 6e-28,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 175/344 (50%), Gaps = 8/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     ++     +P+  + L +  + +L I AS  +  +   I   
Sbjct: 1   MKFIVSSSALLKQLSAINGVVTTNPVVPILENFLFEIQESVLTITASDLQTSMITEIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I V A +L + ++ L +  Q   F  +     V IS  +  + L     ++FP 
Sbjct: 61  AKEDGNIAVPARILIETLKNLPE--QPVTFSIDHDTYAVEISSDNGRYRLAGENATDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   + ++++ VL + V  T FA +++E+R  + G++ +++  +     VATDGHR
Sbjct: 119 IPTVSNATTVDMSTEVLASAVSNTIFATSSDELRPAMTGVYINLSPTNTTF--VATDGHR 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L     VD+ +  A   ++I+PRKA+  +   L S++  V V  ++S  +    S+ M  
Sbjct: 177 LVRYRRVDVASSDAA--NLIIPRKALNLLKSTLPSENVPVSVEFNQSNAYFKFNSIKMIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  FP+Y+NVIP  N   + ++   L  ++ R++I ++     V+L L+  +L ++ 
Sbjct: 235 RLIDERFPDYENVIPAENPNLMTIDRQELLSSLKRIAIYANKTTHQVRLKLTGSELLISA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   +A E ++  ++   ++I FN K+L+E+++N+S  EV 
Sbjct: 295 EDLDFSNEANERLSCEHDGEDIEIGFNAKFLVEMLNNLSCKEVT 338


>gi|56751505|ref|YP_172206.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 6301]
 gi|81298812|ref|YP_399020.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 7942]
 gi|56686464|dbj|BAD79686.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 6301]
 gi|81167693|gb|ABB56033.1| DNA polymerase III, beta subunit [Synechococcus elongatus PCC 7942]
          Length = 390

 Score =  129 bits (325), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 196/392 (50%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  +   PV  +VLL A+ G   L + A    + I  +  
Sbjct: 16  MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 75

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V+  G+IT+ A LL DIV +L + + ++    +   T   +S G   + ++     EF
Sbjct: 76  AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 132

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   + +L++S L   +  T FA + +E +  L G+   +  + L+  A  TDG
Sbjct: 133 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAA--TDG 190

Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESL 235
           HRLAV + +   A  A   ++ VP +A+ ++ R+++ + S   ++L   + +        
Sbjct: 191 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 250

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293
            ++ R +DG++PNY  +IP   ++ + V+   L  A++R+++++  +  A++LSL   ++
Sbjct: 251 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 310

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L + VD  D+G   E++       P++I FN +YL E +  +++      ++  +L+S+
Sbjct: 311 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNT-----TDIQIQLNSN 365

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S V +         +    V   Y++MP+++
Sbjct: 366 TSPVVL---------SPLGPVKITYLVMPIQL 388


>gi|229816227|ref|ZP_04446537.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM
           13280]
 gi|229808235|gb|EEP44027.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM
           13280]
          Length = 367

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 104/389 (26%), Positives = 190/389 (48%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S + + +    + I   +T+P+   VL++A DG+LE + S   I I   I A 
Sbjct: 1   MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119
           VD  G + +   +L +IV+ L D A +SF    EL   +V I+   S F L +    +FP
Sbjct: 61  VDEEGQVVIPCKMLSNIVKTLPD-APVSF----ELAERQVTITCERSTFRLNTLDAGDFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    S EL +++L  +V R     +T++ R  LNG++  +    ++L  VATD +
Sbjct: 116 EFPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSY 173

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV +  +  + +     + VP  A  + L I   +  S+ +  +++++     + +  
Sbjct: 174 RLAVCDTQVETSSLEGSFELNVPADAFNDALAITGGQ-GSILIGSTDTQVVFVAGNTTYV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLC 296
            R I+G +PNY+ ++P S    ++++   L  A+ RVS ++     AVK  +S+ + ++ 
Sbjct: 233 ARRIEGMYPNYKALLPASCATTVKIDVAALTSALKRVSTVAQAN-SAVKFDISVETGQMM 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  + D   A  ++ V        I FNY Y+   ++ +S ++    E+   L S N +
Sbjct: 292 LSAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQA 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  D         K+N  Y++MP+RI
Sbjct: 348 GVFKSYD---------KINYLYLVMPVRI 367


>gi|302336539|ref|YP_003801746.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084]
 gi|301320379|gb|ADK68866.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084]
          Length = 367

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 101/388 (26%), Positives = 190/388 (48%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V +S + + L    + +   +T+P+   +L+ A +G L  + +   I +   I A 
Sbjct: 1   MKFSVSQSSLSQALAVVSKGMGSNSTLPILSGILITAAEGTLTFQTTDLTINVRHRIAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS  VS  +L +IV+ L D A +SF     +   V+IS   S F L +   S+FP 
Sbjct: 61  VEEAGSTVVSGKILMNIVKTLPDAA-VSFEGGERV---VSISCDKSTFRLNTLDPSDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     + EL SS+L  +V++ +   + +  R  L+G+   + E  ++L  VATD +R
Sbjct: 117 FPQFALGRTIELPSSLLSEMVDKVYKVTSRDTSRPILSGVLLSVEENTIRL--VATDSYR 174

Query: 181 LAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV + +     A +    IVP     ++L  L S    V +  ++S++     + +   
Sbjct: 175 LAVCDSNAETSSADEAFQTIVPGMTFHDVLT-LPSMTEKVLIGTTDSQVVFVFGNTTYIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM-- 297
           R I+G FPNY+ ++P   +  ++VN +    A+ RVS+++     +V++ + +D   M  
Sbjct: 234 RKIEGNFPNYKQLLPADCNTSVKVNVSEFASALKRVSVIALAN-PSVRVDIDTDGGVMKL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  +PD G++ E + V      M I  NY Y+ + ++  ++++ +  E+   L +    +
Sbjct: 293 SASSPDQGESTELLPVDVEGQSMSIALNYHYVFDCVNAAANEKEITLEL---LSAMQPGI 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F              K+N  Y+LMP+R+
Sbjct: 350 F----------KSYAKINYLYLLMPVRM 367


>gi|255037469|ref|YP_003088090.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
 gi|254950225|gb|ACT94925.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
          Length = 374

 Score =  129 bits (324), Expect = 7e-28,   Method: Compositional matrix adjust.
 Identities = 102/367 (27%), Positives = 173/367 (47%), Gaps = 13/367 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     ++     +P+  + LL  +   L + AS  +  +   I   
Sbjct: 1   MKFVVSSSVLLKQLSAINGVVSTNPIVPILENFLLTLDGNSLTVTASDLQTVMITEIEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I + A LL D +R L +            GTE+   +G   + L      +FP 
Sbjct: 61  SSEKGAIAIPAKLLLDTLRGLPEQPITLQVNAETFGTEIISDNG--RYKLSGENPIDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T       S + +S  L + +  T FA +T+++R  + G+F  +  E      VATDGHR
Sbjct: 119 TPVVNRGQSVDFSSVALGSAISNTLFATSTDDLRPAMTGVFVQMGAESATF--VATDGHR 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      DI + I    S+I+ RKA+  +   L S+D  VK   + S    +  ++ M  
Sbjct: 177 LVRYRRTDIKSDIDT--SMIIQRKALNLLKSCLPSEDVPVKAEFTSSNAFFSFGNIRMIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  FP+Y+N IP +N   L +N   +  ++ R+SI S+     V++ ++ + L ++ 
Sbjct: 235 RLIDERFPDYENAIPTNNPNTLTINRLEILSSLRRISIYSNRTTHQVRMKMALNDLVISA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++ D   +A E +   YN   M+I FN K+L+E++ N+SS       + F L + N +  
Sbjct: 295 EDLDYSNEANERLMCEYNGDDMEIGFNAKFLIEVLGNLSS-----KTITFELSAPNRAGL 349

Query: 359 IRGKDKD 365
           I   D++
Sbjct: 350 IIPVDQE 356


>gi|317131010|ref|YP_004090324.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468989|gb|ADU25593.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3]
          Length = 369

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/343 (27%), Positives = 177/343 (51%), Gaps = 10/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+       + E L  A R +  K ++P    +L++  D  + ++A   E+ I+  I A 
Sbjct: 1   MQFRCNTKKLAEALAVAGRAVSSKTSMPALEGILIRTGDHQIILQAYDLELGISTTIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G I ++A +  D+VRKL  G  +    +++L T V  + G + F +   P  EFP 
Sbjct: 61  CRSDGEIVLNAKIFADMVRKLP-GDTVEVKSDDKLLTIV--TSGAAEFTILGTPAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S EL  ++L +++ +T FA++T+E      GI F + E+ L+L  VA DG R
Sbjct: 118 LPSLSDGASIELPENLLSSMIRQTIFAISTDESNPIHTGILFELQEKTLRL--VAVDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+   + V Q     + +VP K + EI ++L S+ D  + V++ E  I  +I   ++  
Sbjct: 176 LAI-RTEPVTQDGSF-AFVVPGKTLAEISKLLHSESDEKITVTVGEKHILFDIAGYTVIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMT 298
           RL++G+F +Y++V+  +     RVN   L  ++DR S++ + R+++ V+    SD++ + 
Sbjct: 234 RLLEGQFLDYKSVLGGNTTAHARVNARALTDSIDRASLLITDRLKSPVRCIFESDRIRIK 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             +  +GK  + ++  +   P ++ FN +YL++ +     DEV
Sbjct: 294 CSS-SIGKVYDEVSAAFEGEPCEMGFNNRYLMDALKAADCDEV 335


>gi|1706497|sp|P52023|DPO3B_SYNE7 RecName: Full=DNA polymerase III subunit beta
 gi|974615|gb|AAA75109.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 7942]
          Length = 375

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 196/392 (50%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  +   PV  +VLL A+ G   L + A    + I  +  
Sbjct: 1   MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V+  G+IT+ A LL DIV +L + + ++    +   T   +S G   + ++     EF
Sbjct: 61  AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   + +L++S L   +  T FA + +E +  L G+   +  + L+  A  TDG
Sbjct: 118 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEFAA--TDG 175

Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESL 235
           HRLAV + +   A  A   ++ VP +A+ ++ R+++ + S   ++L   + +        
Sbjct: 176 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293
            ++ R +DG++PNY  +IP   ++ + V+   L  A++R+++++  +  A++LSL   ++
Sbjct: 236 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L + VD  D+G   E++       P++I FN +YL E +  +++      ++  +L+S+
Sbjct: 296 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNT-----TDIQIQLNSN 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S V +         +    V   Y++MP+++
Sbjct: 351 TSPVVL---------SPLGPVKITYLVMPIQL 373


>gi|311070649|ref|YP_003975572.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942]
 gi|310871166|gb|ADP34641.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942]
          Length = 378

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 189/354 (53%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL   + +    +N+  T   I  G + F L  
Sbjct: 61  EGDKEIITIEQPGSIVLQARFFSEIVKKLP-MSTVEIEVQNQYLT--IIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
            +ATD HRLA+  A++DI    +   ++++P K++ E+ +IL      V + ++E+++  
Sbjct: 176 CIATDSHRLALRKAKLDIPEDSSY--NVVIPGKSLTELSKILDDNQELVDIVITETQVLF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS
Sbjct: 234 KAKNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLS 293

Query: 290 LS-SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
              ++ + ++ ++P++GK +E++     E   ++I F+ KY+L+ +  +   E+
Sbjct: 294 AKPAESIEISSNSPEIGKVVEAVLADQIEGEELNISFSPKYMLDALKVLEGAEI 347


>gi|159902541|ref|YP_001549885.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9211]
 gi|159887717|gb|ABX07931.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9211]
          Length = 397

 Score =  129 bits (324), Expect = 8e-28,   Method: Compositional matrix adjust.
 Identities = 95/355 (26%), Positives = 180/355 (50%), Gaps = 17/355 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  ++LL A+ G   +  +G ++   I  ++ 
Sbjct: 13  MKLVCSQSELNSALQLVSRAVASRPTHPVLANILLTADAGTGRLSLTGFDLNLGIQTSLT 72

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+V G+ T+ A L  +IV KL   + I+   + ELG +VN++     + ++     +F
Sbjct: 73  ASVEVSGATTLPAKLFGEIVSKLSSDSPINLVSD-ELGEKVNLTSKSGTYQMRGLNADDF 131

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   S ++   +  N ++ T FA +++E +  L G+  H+  +   L A ATDG
Sbjct: 132 PELPLVQTGASLQINPLIFANALKSTLFASSSDESKQILTGV--HLIFDGNILQAAATDG 189

Query: 179 HRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           HRLAV  ++    +    +        + +P K++ EI R + +  +  K+SL      +
Sbjct: 190 HRLAVLNLEDAINLNSSTNLNTNDKIEVTLPAKSLREIERFIGNYKNEEKISLFYDSGQV 249

Query: 231 NIESLS--MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
              +L+  ++ R+++G++PNY  +IP S    L  +      A++R+++++      +K+
Sbjct: 250 VFTALNQVVTTRILEGDYPNYNQLIPESFSNILEFDRKPFISALERIAVLADQHNNVIKI 309

Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           S   SSD + +T D  D+G  +ES+ V +N     I FN +YLLE +     D++
Sbjct: 310 SKEPSSDLVKITADAQDVGSGVESIPVKFNGDNFQIAFNVRYLLEGLRVFEEDKI 364


>gi|62185060|ref|YP_219845.1| DNA polymerase III subunit beta [Chlamydophila abortus S26/3]
 gi|62148127|emb|CAH63884.1| DNA polymerase III, beta chain [Chlamydophila abortus S26/3]
          Length = 366

 Score =  129 bits (324), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 104/386 (26%), Positives = 191/386 (49%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  H+L++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHMLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS       G    I+ G S F L S  + +FP
Sbjct: 61  VYESGAISIPSKRFFQLVKELTEANLEIS----ATTGEMAKITSGSSCFRLLSMGKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I   +     V TDG 
Sbjct: 117 MLPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTI--ANGTATVVGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  ++++    +     I+P KAV EI++ L S+DS   + L +++I +   +  +  
Sbjct: 175 RLAKTDIEVSLDKSFTGDYIIPIKAVEEIIK-LCSEDSEASIFLDQAKIAVECGNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   +   L ++   L   + +V++ ++    +VK + +  +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V      RL  S+S  + 
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELV------RLGISDS--YN 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   DS         + +V+MPMR+
Sbjct: 345 PGIITDS-------TRSLFVIMPMRL 363


>gi|258423236|ref|ZP_05686128.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635]
 gi|257846565|gb|EEV70587.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635]
          Length = 377

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  IDGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|289610240|emb|CBI60295.1| unnamed protein product [Sordaria macrospora]
          Length = 162

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 62/146 (42%), Positives = 95/146 (65%)

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
           KMP +IVPRK V E+ ++L   D SV VSLS S+I  ++    ++ +LIDG FP+Y  VI
Sbjct: 11  KMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGSKIRFDLGQAILTSKLIDGTFPDYSRVI 70

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313
           P +NDK L+++  +    VDRVS +++ + +AVK++L  DK+ ++V +P+ G A E +  
Sbjct: 71  PTANDKLLKLDPKSFMAGVDRVSTIATEKTRAVKMALDRDKITLSVTSPENGAAAEEVPG 130

Query: 314 YYNECPMDICFNYKYLLEIIDNISSD 339
            Y   P +I FN +YLL+I+  I SD
Sbjct: 131 EYAALPFEIGFNSRYLLDILGQIDSD 156


>gi|291541863|emb|CBL14973.1| DNA polymerase III, beta subunit [Ruminococcus bromii L2-63]
          Length = 368

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 179/342 (52%), Gaps = 9/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+  RSD+   + +  R +  K +IP    VL++A    L I     EI IT  I A+
Sbjct: 1   MKISCLRSDLATAISNVSRAVSTKASIPALEGVLIKAYGNTLNISGYNLEIGITTDIEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I VSA L  DIVR+L +  +I F + +E      I+ G  N+ +      E+P 
Sbjct: 61  IKEEGEIVVSAKLFLDIVRRLPE--EIVFIETDERMV-TYIACGKVNYQIVGMSSVEYPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L + +L++++ +T +A++    +    G  + I +   K+ A+  DG+R
Sbjct: 118 LPSFEQTDRITLNAKILRDMIRQTVYAVSENTAKPIYTGSLYEIEDGVFKIIAI--DGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+   ++ ++       +VP K   E+L++L+  + + ++ + +  I   I++  +  R
Sbjct: 176 MAIRSENVDSE--SKNRFVVPGKTQHEVLKLLTDDEENTEIIIGQRHITFKIKNYRIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTV 299
           LI+G F  Y++ IP     E+ +N   +  AV+R+S++++ RIQ+ V+   S D++ ++ 
Sbjct: 234 LIEGTFIEYKSAIPKETKTEVVINTRTIIDAVERMSLLNNDRIQSPVRCIFSDDEIKLSC 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +  +G+A + ++V      ++I FN +YLL+ + N  +DE+
Sbjct: 294 TSA-VGRANDVISVPIIGESVEIGFNNRYLLDALKNADTDEI 334


>gi|28376976|ref|NP_783868.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254555171|ref|YP_003061588.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum JDM1]
 gi|300769107|ref|ZP_07078996.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179193|ref|YP_003923321.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28269807|emb|CAD62704.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254044098|gb|ACT60891.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum JDM1]
 gi|300493347|gb|EFK28526.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044684|gb|ADN97227.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 379

 Score =  129 bits (323), Expect = 9e-28,   Method: Compositional matrix adjust.
 Identities = 92/345 (26%), Positives = 172/345 (49%), Gaps = 18/345 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L +  R I  K TIP+   + L  N   + +  S  +I I   IPAS
Sbjct: 1   MKFTINRSAFIKELNNVQRAISSKTTIPILTGLKLDVNTDAITLTGSDADISIETTIPAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  V+  GSI + A    +IV+KL +D   ++       G +  I+ G ++F +  
Sbjct: 61  DDNNTLVVEDAGSIVLPARFFSEIVKKLPEDTMTVNVVD----GFQTQITSGAASFTING 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P   E +   +  LA  VLK L+ +T  A++ +E R  L G+ F +   + +  
Sbjct: 117 LDPENYPHLPEIDTTNTITLAGDVLKELIGQTVIAVSNQESRPILTGVHFIL--ANGEFL 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRL+   + +         +I+P K++ E+ R++   +  V++ LSE+++   +
Sbjct: 175 AVATDSHRLSQRRIKLPEANNANYDVIIPGKSLTELSRMIGDNNPDVQMRLSENQVLFVL 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            + S   RL++G +P+   +IP  ++  + ++   L  A++R S++S   R   V+ S++
Sbjct: 235 GNTSFYSRLLEGNYPDTSRLIPKESNTTVEISAPALSAAIERASLLSHESRNNVVRFSVN 294

Query: 292 SDKLCMTV--DNPDMGKAIESMN-VYYNECPMDICFNYKYLLEII 333
                +T+  ++PD+G+  E +     +   ++I FN  Y+ E +
Sbjct: 295 PTDKTITIFGNSPDVGEVTEQLQPTDLSGDELEISFNPDYMKEAL 339


>gi|317126743|ref|YP_004093025.1| DNA polymerase III subunit beta [Bacillus cellulosilyticus DSM
           2522]
 gi|315471691|gb|ADU28294.1| DNA polymerase III, beta subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 380

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 100/358 (27%), Positives = 182/358 (50%), Gaps = 20/358 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK ++ R   ++ + H  + I  + TIPV   + ++A+   + +  S  +I I   IP  
Sbjct: 1   MKFSINRDQFVQSVQHVSKAISPRTTIPVLTGIKIEASFDGVTLTGSDSDISIESFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL +D  ++S   E  + T   +  G S F L 
Sbjct: 61  DEEIQNVELEQPGSIVLPARFFAEIVKKLPEDTIELSV-SEQFVTT---LKSGSSVFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   E E    F+L + +LKN++ +T FA++T E R  L G+ + I  E+  L
Sbjct: 117 GLDPNEYPRLPEIEEDNVFKLKTDLLKNIIRQTVFAVSTVETRPILTGVHWAI--EEGTL 174

Query: 172 CAVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
              ATD HRLA+  A+ +         ++++P K++ E+ +IL   +  V + ++E++I 
Sbjct: 175 ACTATDSHRLAMRNAKAETNTNDLSFSNVVIPGKSLNELSKILDDNEEWVDIIVTENQIL 234

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              ++L    RL+DG +P   N+IP ++   +++      QA++R  ++S   +   V L
Sbjct: 235 FKAKNLLFFSRLLDGNYPATNNMIPTNSKTNVKLETKKFMQAIERALLLSRDGKNNVVNL 294

Query: 289 -SLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            +LS+  L +T   P++GK  E +  + +N   + I FN K +++ +  I S EV  D
Sbjct: 295 KTLSNTHLEITSVTPEVGKVTEDVATLDFNGEELRISFNGKNIIDALRVIDSTEVTID 352


>gi|225862059|ref|YP_002747437.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|300118808|ref|ZP_07056528.1| DNA polymerase III subunit beta [Bacillus cereus SJ1]
 gi|225787164|gb|ACO27381.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|298723776|gb|EFI64498.1| DNA polymerase III subunit beta [Bacillus cereus SJ1]
          Length = 379

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             +ATD HRLA+ +  I   + +  + +++P K++ E+ +IL   +  V + ++E ++  
Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|33864540|ref|NP_896099.1| DNA polymerase III subunit beta [Synechococcus sp. WH 8102]
 gi|33632063|emb|CAE06516.1| DNA polymerase III beta subunit [Synechococcus sp. WH 8102]
          Length = 385

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 182/357 (50%), Gaps = 19/357 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + ++   E E G +V ++    ++ ++  P  ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLASDSPLTLTTE-ESGEQVQLNSLSGSYQMRGMPADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L +S L   ++ T FA + +E +  L G+  H++  D  L A ATDG
Sbjct: 120 PDLPMVESGLTLKLQASGLVQALKGTLFASSGDEAKQLLTGV--HLSFTDTNLEAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227
           HRLAV +V+   Q A   +        + +P +++ E+ R+++   S   +SL   R   
Sbjct: 178 HRLAVLQVNDALQAAAEGTEGEGAAFAVTLPARSLREVERLVAGWRSEDPISLFCDRGQV 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           + L  + +  S R ++G +PNY+ +IP    + L ++   L  A++R+++++      VK
Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYRQLIPDGFSRTLTMDRRALVGALERIAVLADQHNNVVK 296

Query: 288 LSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            S    S  + ++ D  D+G   ES+    +   + I FN +Y+L+ +  ++ D VV
Sbjct: 297 FSSQPESGVVLISADAQDVGSGSESLAAELSGDAIQIAFNVRYMLDGLKAMAGDRVV 353


>gi|78183585|ref|YP_376019.1| DNA polymerase III subunit beta [Synechococcus sp. CC9902]
 gi|78167879|gb|ABB24976.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9902]
          Length = 385

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/357 (26%), Positives = 180/357 (50%), Gaps = 19/357 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+   E E G +V ++    ++ ++  P  ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   ++ T FA + +E +  L G+    N + L+  A ATDG
Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227
           HRLAV +V+   + A           ++ +P +++ E+ R+++   S   VSL   R   
Sbjct: 178 HRLAVLQVEDALEDAAANSDDAAEGFAVTLPARSLREVERLMAGWRSDDPVSLFCDRGQV 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           + L  + +  S R ++G +PNY  +IP   ++ L ++   L  A++R+++++      VK
Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVK 296

Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +   D+  + ++ D  D+G   ES+        + I FN +YLL+ +  + SD VV
Sbjct: 297 FTSQPDEGVVQISADAQDVGSGSESLAANLTGDAIQIAFNVRYLLDGLKAMGSDRVV 353


>gi|229917454|ref|YP_002886100.1| DNA polymerase III subunit beta [Exiguobacterium sp. AT1b]
 gi|229468883|gb|ACQ70655.1| DNA polymerase III, beta subunit [Exiguobacterium sp. AT1b]
          Length = 379

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 180/364 (49%), Gaps = 39/364 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M +T++R   ++ +    + +  + TIP+   + L+A+   L +  S  EI I   IP  
Sbjct: 1   MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106
                   +   GS+ ++A  L +IV+KL           NE+  EV+      I  G +
Sbjct: 61  EGGMELIQIQRAGSVVLNARFLGEIVKKL---------PTNEVTLEVSPNFMTRIESGQA 111

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
            F+L      E+P   E      F L + +LK ++ +T FA++++E R  L G+ F  + 
Sbjct: 112 EFHLNGLDPDEYPRLPELASDRRFYLPADLLKTIIRQTSFAVSSQETRPVLTGVNF--SA 169

Query: 167 EDLKLCAVATDGHRLAVAEV------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
           E   L  VATD HRLA+         D+  Q     +++VP +++ E+ ++L  ++  ++
Sbjct: 170 EKGFLTCVATDSHRLALRRARFETDNDLTFQ-----NVVVPGRSLNELAKLLDREELPIE 224

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + L++ +I   ++++S   RL+DG +P+   +IP      +R+N     QA+DR S+++ 
Sbjct: 225 IVLTDQQILFRMKNISFFSRLLDGAYPDTSRLIPEEYRTAVRMNAKEFLQAIDRASLLAR 284

Query: 281 VRIQAVKLSLSSDKLCMTVD--NPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNIS 337
                V   ++ DK  + V   +P++GK  E +++   E   + I FN K++++ +  + 
Sbjct: 285 ADRNNVIKFVAEDKTAVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALD 344

Query: 338 SDEV 341
           + E+
Sbjct: 345 ASEI 348


>gi|150007344|ref|YP_001302087.1| DNA polymerase III subunit beta [Parabacteroides distasonis ATCC
           8503]
 gi|255014025|ref|ZP_05286151.1| DNA polymerase III beta chain [Bacteroides sp. 2_1_7]
 gi|256839635|ref|ZP_05545144.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13]
 gi|262382081|ref|ZP_06075219.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B]
 gi|298375332|ref|ZP_06985289.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
 gi|301310654|ref|ZP_07216593.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3]
 gi|149935768|gb|ABR42465.1| DNA polymerase III beta chain [Parabacteroides distasonis ATCC
           8503]
 gi|256738565|gb|EEU51890.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13]
 gi|262297258|gb|EEY85188.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B]
 gi|298267832|gb|EFI09488.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
 gi|300832228|gb|EFK62859.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3]
          Length = 374

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/349 (27%), Positives = 169/349 (48%), Gaps = 16/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  + +L  L    ++I  KN++P+    L       L + AS  E  +      S
Sbjct: 1   MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNTLTVTASDAETRLV----TS 56

Query: 61  VDV-----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           VDV      G   VSA +L D +++L +        +  L   ++  +G  NF  Q    
Sbjct: 57  VDVMNAQGAGLFAVSAKILLDPLKELPEQPLTFDINDENLEIFIHFQNGKYNFIGQK--G 114

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             +P  K   +   S  + + +L N + R+ FA A +E+R  +NG++F I+ +DL    V
Sbjct: 115 DTYPQQKPLNDNAISISMDAQMLLNGISRSLFATADDELRPVMNGVYFDIHTDDLTF--V 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+DGH+L V   ++  +  +  S I+P+K    +  +L+ +   V +   ++  ++   +
Sbjct: 173 ASDGHKL-VRLRNLAVKSPERASFILPKKPANLLKNLLAKESEQVLIKFDDNNAYITCTN 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             M  RLI+G +PNY +VIP  N  ++ ++  +   A+ RVS+ S+     VKL L    
Sbjct: 232 FEMVCRLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLHLKDSL 291

Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + ++  + D   + E   V  ++   + I F   YL+EI+ NISS+EVV
Sbjct: 292 ITVSAQDIDFSTSAEERIVCQFDGTELSIGFKATYLIEILGNISSEEVV 340


>gi|206975877|ref|ZP_03236788.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217957583|ref|YP_002336125.1| DNA polymerase III subunit beta [Bacillus cereus AH187]
 gi|222093776|ref|YP_002527823.1| DNA polymerase iii subunit beta [Bacillus cereus Q1]
 gi|229142239|ref|ZP_04270763.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26]
 gi|229199686|ref|ZP_04326329.1| DNA polymerase III subunit beta [Bacillus cereus m1293]
 gi|206745971|gb|EDZ57367.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217065811|gb|ACJ80061.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|221237821|gb|ACM10531.1| DNA polymerase III, beta subunit [Bacillus cereus Q1]
 gi|228583781|gb|EEK41956.1| DNA polymerase III subunit beta [Bacillus cereus m1293]
 gi|228641257|gb|EEK97564.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26]
 gi|324323996|gb|ADY19256.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 379

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 185/355 (52%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  ENGKEIVEVNQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             +ATD HRLA+ +  I   IA     ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 175 TGIATDSHRLALRKAKIEG-IADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293

Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           S L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 294 STLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|15893300|ref|NP_346649.1| DNA polymerase III subunit beta [Clostridium acetobutylicum ATCC
           824]
 gi|15022819|gb|AAK77989.1|AE007513_2 DNA polymerase III beta subunit [Clostridium acetobutylicum ATCC
           824]
 gi|325507409|gb|ADZ19045.1| DNA polymerase III subunit beta [Clostridium acetobutylicum EA
           2018]
          Length = 366

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 104/387 (26%), Positives = 191/387 (49%), Gaps = 26/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   E++ + E +  A + +  K+T+PV   +L+   +  L +  S  ++ I   I   
Sbjct: 1   MKFICEKNILQEAIITAQKAVTGKSTMPVLQGILMSVQNNELTLIGSDIDLSIETKINVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A LL +I+RKL +   +I   + N     V I+   S   L     ++FP
Sbjct: 61  VLEEGKVVLDARLLSEIIRKLPNSKVEIQTIENNC----VEITCNKSKLTLVYLNPNDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E +    F++    LK +++ T FA+A +E R  L G+ F I  +D KL  VA DG+
Sbjct: 117 SLPEIDENSIFKINQKTLKTMIKGTIFAIAQDETRPILTGVLFEI--KDSKLNLVAIDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    I  + +   + ++P K + E+++IL   D  V ++ + + I  N+ +  +  
Sbjct: 175 RLALRSQYIDNETS--INAVIPGKTLNEVIKILED-DGDVNITFTSNHILFNLGNTKIIS 231

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           RL++GEF  Y ++IP   +  +      L   ++R S+M+       +KL +  D + +T
Sbjct: 232 RLLEGEFIKYNSIIPEEYNLNIVARKEELLDCIERASLMAKDGNNNLIKLDIEDDVMIIT 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N  +G   E +N+     P+ I FN KYL++++  ++      +E+V    SS S   
Sbjct: 292 -SNSQLGNVREEINIILQGQPLKIAFNSKYLIDVLKIMNQ-----EEIVMNFSSSISPCI 345

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ K+ D         ++ Y+++P+R+
Sbjct: 346 IKNKEND---------DSTYLILPVRL 363


>gi|229099917|ref|ZP_04230840.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29]
 gi|229100790|ref|ZP_04231610.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28]
 gi|229118980|ref|ZP_04248325.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3]
 gi|228664505|gb|EEL20001.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3]
 gi|228682629|gb|EEL36686.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28]
 gi|228683532|gb|EEL37487.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29]
          Length = 381

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/359 (27%), Positives = 186/359 (51%), Gaps = 27/359 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S   I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDANISIESFIPVE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  EDGKEIVEIGQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L +
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-I 175

Query: 172 CAVATDGHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           C +ATD HRLA+ +  I    +A  A   ++++P K++ E+ +IL   +  V + ++E +
Sbjct: 176 C-IATDSHRLALRKAKIEGYNIAD-AFQANVVIPGKSLNELSKILDESEEMVDIVITEYQ 233

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
           +    + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   V
Sbjct: 234 VLFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVV 293

Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           KLS L    L ++ ++P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 294 KLSTLEQKMLEISSNSPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|310639473|ref|YP_003944231.1| DNA polymerase iii, beta subunit [Paenibacillus polymyxa SC2]
 gi|309244423|gb|ADO53990.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa SC2]
          Length = 380

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 196/396 (49%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKI++ ++ + E + H  + I  + TIP+   + L  N   + + AS  +I I   IP  
Sbjct: 1   MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GS+ + A    +I++KL    +I    +++  T   IS G +   +  
Sbjct: 61  DGDQTVVQIEQPGSVVLPAKFFVEIIKKLP-SQEIRMEVKDQFQT--FISSGATEIQIVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E      +   +LKN++++T F+++T E    L G+ +++ E +LK  
Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +  ++  +  ++++  K + E+ RI+  ++  V + ++++++   
Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           ++ +    R++DG +P+   +IP S   EL V+  +L +++DR  ++S   +   VK+ S
Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L +  L ++  + ++GK  E +NV   E  P+ I FN KY+L+++  I S     +++  
Sbjct: 296 LENGDLEISSSSSELGKVREEVNVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D           NA Y+++P R
Sbjct: 351 AFTGIMSPIILKPADSS---------NALYIILPYR 377


>gi|229083316|ref|ZP_04215678.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44]
 gi|228699991|gb|EEL52614.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44]
          Length = 381

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 181/356 (50%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  ENGKEIVEIAQSGSIILQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFQIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I +         ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIESHTISNEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ ++P++GK +E +     E   + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEEQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDSTEI 350


>gi|218297058|ref|ZP_03497735.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
 gi|218242613|gb|EED09150.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
          Length = 371

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 87/349 (24%), Positives = 177/349 (50%), Gaps = 21/349 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ ++ + E +    R+I  +++ P+  ++ L A    L +  S  E+++   +PA 
Sbjct: 1   MRVTLPKNLLAERIALLERVIPSRSSNPLLTYLGLAAEKDALVLFGSNGEVDLEVRLPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115
           ++  G   + +   + +VR L  G  +    E  LG+E+ ++ G     L     + +PE
Sbjct: 61  LEGEGRYLIPSQPFFQLVRSL-PGETV----ELSLGSELALASGRFTTRLALAPMEGYPE 115

Query: 116 SEFPSTKEEEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             FP  +  E  ++   +  +  L+  + +  +A + EE R    G+    ++   +  A
Sbjct: 116 LLFPDLEGGEGAFTQRAQFLAEELQRALSQVRYAASNEEYRAIFRGVQLEFSDRGFR--A 173

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VA+DG+RLA+ +++      +    +VP ++V E++R+L S +  V ++L    + L + 
Sbjct: 174 VASDGYRLALFDLERPQPFTR--KAVVPARSVDELVRVLRSAEGEVVLALGPGTLGLAVR 231

Query: 234 ----SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
               +L M+VRL++GEFP+Y+ VIP     +  ++    R+A+ RVS+++  +   V L 
Sbjct: 232 QEEGALRMAVRLMEGEFPDYERVIPKEFPLKAALDVEPFREALKRVSVLADKQNHRVDLF 291

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           L   ++ ++ +  D GK  E + V     PM + +N +YLLE +  +S 
Sbjct: 292 LEEGRVLLSAEG-DYGKGQEEIFVSLEGAPMSLAYNARYLLEALAPLSG 339


>gi|282852315|ref|ZP_06261657.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1]
 gi|282556057|gb|EFB61677.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1]
          Length = 376

 Score =  129 bits (323), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF       T+  I   ++ F +     +
Sbjct: 61  ADLVVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVRESFQTK--IVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E ++    E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRASITDSII 345


>gi|88697514|gb|ABD48451.1| DnaN [Morganella psychrotolerans]
          Length = 193

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 75/200 (37%), Positives = 115/200 (57%), Gaps = 9/200 (4%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+   +        G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVSLVQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLV 141
           DGAQIS     EL G  + +  G S F L + P S+FP+  + +   +F L  + LK L+
Sbjct: 61  DGAQISV----ELDGDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLI 116

Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201
           E T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI   +    S+IVP
Sbjct: 117 ESTQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPDH-SVIVP 173

Query: 202 RKAVGEILRILSSKDSSVKV 221
           RK V E++R+L   ++ +K+
Sbjct: 174 RKGVIELMRLLDGGEALLKL 193


>gi|42518086|ref|NP_964016.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533]
 gi|41582370|gb|AAS07982.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533]
          Length = 376

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E +     E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRASITDSII 345


>gi|329666393|gb|AEB92341.1| DNA polymerase III, beta chain [Lactobacillus johnsonii DPC 6026]
          Length = 376

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E +     E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRASITDSII 345


>gi|46447339|ref|YP_008704.1| DNA polymerase III subunit beta [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400980|emb|CAF24429.1| putative DNA polymerase III, beta chain [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 403

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 102/386 (26%), Positives = 194/386 (50%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   ++  L+     ++ +K TIP+  + L++A +  L + A+   + I     A 
Sbjct: 30  MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTEAK 89

Query: 61  VDVCGSITVSAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   GS T+ A  L  +VR+L     +IS    NE+ T   I  G S F L    ++++P
Sbjct: 90  ILEEGSTTLPAKRLSQLVRELTAVNVEIST-NTNEITT---IIAGSSRFKLNGMSKTDYP 145

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  +    ++FE+  S LK+L+ RT FA++ E+ RY L G+F  I    +    + TDG 
Sbjct: 146 SLPDLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITF--IGTDGK 203

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A+  I    +     I+P KAV EIL+ L+  +  VK+SL   ++ +    + +  
Sbjct: 204 RLARAKGVIDNDPSFSGQAIIPIKAVDEILKNLTD-EGEVKISLMADKVAIEANQMRILT 262

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ G++P+   VIP  ++  + ++   L   + ++S+ ++    +V+ +    +L +T 
Sbjct: 263 KLLSGDYPDVNRVIPEKSEIIVTLHREELSSLLRQISLFTADHNHSVRFTFIPGELKLTA 322

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +  D+G+   SM V Y+   ++I FN  + ++I+ +   + V    ++   D+ N  +  
Sbjct: 323 NTMDIGEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKGETV----IMGLTDAYNPGIIT 378

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +  N+ D   +  +V+MPMR+
Sbjct: 379 --DSAELANSLD--ASPLFVIMPMRL 400


>gi|268318564|ref|YP_003292220.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785]
 gi|262396939|emb|CAX65953.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785]
          Length = 376

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E +     E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRASITDSII 345


>gi|149275921|ref|ZP_01882066.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39]
 gi|149233349|gb|EDM38723.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39]
          Length = 374

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 172/343 (50%), Gaps = 6/343 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  DG L I A+  +  +T ++   
Sbjct: 1   MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGSLTISATDLQTSMTTSLAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V A +L D ++ L D  Q   F  ++    + IS GD  + L      +FP 
Sbjct: 61  SKEGGKVAVPAKILLDTLKTLPD--QPVSFNIDDSSFSIEISAGDGKYKLSGENGDDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L +SVL   + +T FA++ +E+R  + G+F  ++E+++    VATD H+
Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSNDELRPAMTGVFCQLSEQNITF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    + ++  K  S I+P+KA+  +   L S D +V V  + +      +++++  R
Sbjct: 177 L-VRYRRMDSKGDKSSSFILPKKALTLLKAALPSTDVNVSVDYNATSAFFKFDNINLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++       + RV I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + D   +A E ++  Y    ++I FN ++L+E++ N+S +EV 
Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNARFLIEMLSNLSGEEVT 338


>gi|314934959|ref|ZP_07842318.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87]
 gi|313652889|gb|EFS16652.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87]
          Length = 377

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 96/376 (25%), Positives = 186/376 (49%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVEISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  V+KN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVIKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQL-EDTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +   +   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGIINGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +     E   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 351

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 352 -GTMKPFILKPKDDDS 366


>gi|327404393|ref|YP_004345231.1| DNA polymerase III subunit beta [Fluviicola taffensis DSM 16823]
 gi|327319901|gb|AEA44393.1| DNA polymerase III, beta subunit [Fluviicola taffensis DSM 16823]
          Length = 372

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 167/342 (48%), Gaps = 7/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V  +++L  L     ++   NT+P+  + L    D  L I AS  E  +   +   
Sbjct: 1   MNFIVSSTNLLRHLQSISGVLSTSNTLPILDNFLFTITDSQLIISASDLETTMQTTMEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + A +L D+++ L D  Q   FK ++   EV I++ +    +  F   EFP 
Sbjct: 61  ATDSGKVAIPAKMLLDVLKNLPD--QPCTFKIDDSKYEVEIAYDNGKSKMVGFNGEEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T   E   S  ++  ++ + + +T FA   +++R  ++G++   +  D+    VATD H+
Sbjct: 119 TPTIENSTSIRISGEIISSAINKTLFAAGNDDLRPVMSGMYCQFSPSDITF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V       Q     + I+P+K +  +L+     D  V++  ++S        + +  R
Sbjct: 177 L-VRYRRSDGQATNGAAFILPKKPLN-LLKSNLRGDEEVQLEYTDSNAIFTFNDIVLMCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N   L V+      A+ RVSI ++     VKL ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNILIVDRMQFLGAIKRVSIFANKTTHQVKLKIAGSELNVSAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + D   +A E +   Y+   ++I FN ++L+E+++NI + EV
Sbjct: 295 DLDFSNEANERLTCNYDGTDIEIAFNSRFLMEMLNNIDAAEV 336


>gi|149182289|ref|ZP_01860768.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
 gi|148849981|gb|EDL64152.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
          Length = 378

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 178/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R D+++ +G   + +  + TIP+   + + AN+  + +  S  +I I   IP  
Sbjct: 1   MKFVIQRDDLVQSVGDVMKAVTSRTTIPILTGIKIIANEEGVTLTGSDSDISIESFIPKE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                 V+V   G I + A    +IV+KL  D  +I    +N L T   I  G + F L 
Sbjct: 61  EEGNEIVEVLETGGIVLQAKFFSEIVKKLPMDTVEIEV--QNHLQT--VIRSGKAEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   + E   + ++ + +LK ++ +T FA++T E R  L G+ + +  E+ +L
Sbjct: 117 GLDPEEYPHLPQIEEGNALKVPTDLLKTMIRQTVFAVSTSETRPILTGVNWKV--ENGEL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATD HRLA+ +  +     K  +I++P K++ E+ +IL      V++ ++++++   
Sbjct: 175 NCIATDSHRLAMRKAPLENDNGKEYNIVIPGKSLTELSKILDDNSELVEIVITDNQVLFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + L    RL++G +P+   +IP  +  EL +      QA+DR S+++   R   VKLS 
Sbjct: 235 AKHLMFFSRLLEGNYPDTSRLIPNESKTELTLTTKEFLQAIDRASLLAREGRNNVVKLST 294

Query: 291 SSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
                  ++ + P++GK IE +     E   + I F+ KY+++ +  +   E+
Sbjct: 295 IEQGFVEISSNTPEIGKVIEEVQSQSIEGEELKISFSAKYMMDALKALEGTEI 347


>gi|153952672|ref|YP_001393437.1| DNA polymerase III subunit beta [Clostridium kluyveri DSM 555]
 gi|219853345|ref|YP_002470467.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016]
 gi|146345553|gb|EDK32089.1| DnaN [Clostridium kluyveri DSM 555]
 gi|219567069|dbj|BAH05053.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016]
          Length = 367

 Score =  128 bits (322), Expect = 1e-27,   Method: Compositional matrix adjust.
 Identities = 106/392 (27%), Positives = 193/392 (49%), Gaps = 35/392 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++ + E +    + I  K+++PV   +LL+A +  + +  S  ++ I   I A 
Sbjct: 1   MKFLCTKNKLQESIFTVQKAITGKSSMPVLNGILLEAYNDTIRLTGSDIDLSIITTIQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENEL-----GTEVNISHGDSNFYLQSFP 114
           V   GSI + + +  DI+RKL  D   IS  + N +      ++ NI H ++    + FP
Sbjct: 61  VQEEGSIVIDSRIFGDIIRKLPNDNIYISTTENNSVEILCQKSKFNIIHMNA----EDFP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E   P+  E  +   F +  + LKN+++ T FA A +E R  L GI F I  + L L  V
Sbjct: 117 E--IPNINENIF---FSIPQNTLKNMIKSTIFATAQDEARPILTGILFEIKNKKLNL--V 169

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A DG+RLA+    +  +   + + ++P K + E+ +IL   + +V ++ + + I  N+ +
Sbjct: 170 ALDGYRLALKSEFLDNE--NVINAVIPGKTLNEVSKILDDDNENVNITFTPNHILFNLIN 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
             +  RL+ GEF  Y ++IP   +  +    + L   ++R S+M+       +KL +  +
Sbjct: 228 TKIISRLLQGEFIKYNSIIPEEYNLRVTAKKSELLDCIERASLMAKDSNTNLIKLKIEQN 287

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + +T  N  +G   E +N+      + I FN KYL++++  +      D+E+V     S
Sbjct: 288 NMIIT-SNSQIGMVREELNILLEGDTLQIAFNSKYLIDVLRIME-----DEEIVMEFSGS 341

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   I    K+SK N     N  Y+++P+R+
Sbjct: 342 VSPCII----KNSKKN-----NCIYLVLPVRL 364


>gi|170288484|ref|YP_001738722.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2]
 gi|170175987|gb|ACB09039.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2]
          Length = 366

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 184/345 (53%), Gaps = 14/345 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A+
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            ++ G     V   ++  +V+ L D   ++S       G  + IS G + F + + P  E
Sbjct: 61  -EISGEARFVVPGDVIQKMVKVLPDEITELSL-----EGDALVISSGSTVFRITTMPADE 114

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+D
Sbjct: 115 FPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236
           G RLA+AE     +  +  S ++  K++ E+  +L ++ + ++ V     R+ L+   + 
Sbjct: 173 GFRLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVE 230

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
             +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + 
Sbjct: 231 TVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMR 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +   +PD G+ ++ + V      + I FN K++ +++ +I ++E+
Sbjct: 291 LVSKSPDYGEVVDEIEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 335


>gi|56966599|pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
           (Tm0262) From Thermotoga Maritima At 2.00 A Resolution
          Length = 378

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 184/345 (53%), Gaps = 14/345 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A+
Sbjct: 13  MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            ++ G     V   ++  +V+ L D   ++S       G  + IS G + F + + P  E
Sbjct: 73  -EISGEARFVVPGDVIQKMVKVLPDEITELSL-----EGDALVISSGSTVFRITTMPADE 126

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+D
Sbjct: 127 FPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASD 184

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236
           G RLA+AE     +  +  S ++  K++ E+  +L ++ + ++ V     R+ L+   + 
Sbjct: 185 GFRLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVE 242

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
             +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + 
Sbjct: 243 TVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMR 302

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +   +PD G+ ++ + V      + I FN K++ +++ +I ++E+
Sbjct: 303 LVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 347


>gi|229164441|ref|ZP_04292369.1| DNA polymerase III subunit beta [Bacillus cereus R309803]
 gi|228619046|gb|EEK75944.1| DNA polymerase III subunit beta [Bacillus cereus R309803]
          Length = 379

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 184/355 (51%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN   T+  I+ G S F L 
Sbjct: 61  ENGKEIVEVAQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHFMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             +ATD HRLA+ +  I   IA     S+++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 175 TCIATDSHRLALRKAKIEG-IADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293

Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           S L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 294 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|319651100|ref|ZP_08005234.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2]
 gi|317397270|gb|EFV77974.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2]
          Length = 378

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 179/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  ++R  +++ +    + +  + TIP+   + + A++  + +  S  +I I   IP  
Sbjct: 1   MRFIIQRDRLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   G+I + A    +IV+KL  D  +IS   EN L T   I  G S F L 
Sbjct: 61  EAGDEIVEIKQAGAIVLQAKFFSEIVKKLPTDTVEISV--ENHLQT--VIRSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   + E    F++ + +LK +V +T FA++T E R  L G+ + +  E+  L
Sbjct: 117 GLDAEEYPHLPQIEEENVFKIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--ENGTL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATD HRLA+ +  I    ++  ++++P K++ E+ +IL   +  + + ++E+++   
Sbjct: 175 TCIATDSHRLALRKAQIETNASESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLS- 289
            E L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS 
Sbjct: 235 AEHLLFFSRLLEGNYPDTSRLIPSDSKTDVIVNTKEFLQAIDRASLLAKEGRNNVVKLST 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           +    + ++ + P++GK +E +     E   + I F+ K++++ +  +   E+
Sbjct: 295 IDGGVIEISSNTPEIGKVVEEVQSKSIEGEELKISFSAKFMMDALKALEGSEI 347


>gi|206970404|ref|ZP_03231357.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
 gi|218234602|ref|YP_002364857.1| DNA polymerase III subunit beta [Bacillus cereus B4264]
 gi|218895143|ref|YP_002443554.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228905434|ref|ZP_04069389.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222]
 gi|228911330|ref|ZP_04075134.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200]
 gi|228924235|ref|ZP_04087506.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228955740|ref|ZP_04117735.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228961754|ref|ZP_04123357.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228968643|ref|ZP_04129626.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229051159|ref|ZP_04194703.1| DNA polymerase III subunit beta [Bacillus cereus AH676]
 gi|229077276|ref|ZP_04209963.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2]
 gi|229112903|ref|ZP_04242434.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15]
 gi|229148040|ref|ZP_04276379.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24]
 gi|229153649|ref|ZP_04281825.1| DNA polymerase III subunit beta [Bacillus cereus m1550]
 gi|229181736|ref|ZP_04309059.1| DNA polymerase III subunit beta [Bacillus cereus 172560W]
 gi|229193741|ref|ZP_04320682.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876]
 gi|296500840|ref|YP_003662540.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
 gi|206734981|gb|EDZ52150.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
 gi|218162559|gb|ACK62551.1| DNA polymerase III, beta subunit [Bacillus cereus B4264]
 gi|218540727|gb|ACK93121.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228589766|gb|EEK47644.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876]
 gi|228601769|gb|EEK59267.1| DNA polymerase III subunit beta [Bacillus cereus 172560W]
 gi|228629835|gb|EEK86488.1| DNA polymerase III subunit beta [Bacillus cereus m1550]
 gi|228635465|gb|EEK91956.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24]
 gi|228670582|gb|EEL25895.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15]
 gi|228706031|gb|EEL58332.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2]
 gi|228722222|gb|EEL73623.1| DNA polymerase III subunit beta [Bacillus cereus AH676]
 gi|228791072|gb|EEM38690.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228797948|gb|EEM44958.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803968|gb|EEM50592.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228835453|gb|EEM80823.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848348|gb|EEM93198.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200]
 gi|228854254|gb|EEM98957.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222]
 gi|296321892|gb|ADH04820.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
          Length = 381

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 183/356 (51%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 350


>gi|42779083|ref|NP_976330.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987]
 gi|42734998|gb|AAS38938.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
          Length = 379

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 184/355 (51%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  ENGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             +ATD HRLA+ +  I   IA     ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 175 TGIATDSHRLALRKAKIEG-IADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293

Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           S L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 294 STLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|16752700|ref|NP_444967.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae AR39]
 gi|7189343|gb|AAF38262.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae AR39]
          Length = 366

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS+      G    I+ G S F L S  + +FP
Sbjct: 61  VYEKGAISIPSKRFFQLVKELTEANLEISY----SAGEMAQITSGSSCFRLLSMEKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG 
Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + ++    +     I+P KAV EI++ + S +    + L + +I +  ++  +  
Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEATIFLDQDKIAVECDNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V   +    DS N  +  
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +  +  +V+MPMR+
Sbjct: 350 ------------DSASGLFVIMPMRL 363


>gi|15643032|ref|NP_228075.1| DNA polymerase III, beta subunit [Thermotoga maritima MSB8]
 gi|4980758|gb|AAD35350.1|AE001708_18 DNA polymerase III, beta subunit [Thermotoga maritima MSB8]
          Length = 366

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/345 (25%), Positives = 184/345 (53%), Gaps = 14/345 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A+
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            ++ G     V   ++  +V+ L D   ++S       G  + IS G + F + + P  E
Sbjct: 61  -EISGEARFVVPGDVIQKMVKVLPDEITELSL-----EGDALVISSGSTVFRITTMPADE 114

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+D
Sbjct: 115 FPEITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236
           G RLA+AE     +  +  S ++  K++ E+  +L ++ + ++ V     R+ L+   + 
Sbjct: 173 GFRLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVE 230

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
             +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + 
Sbjct: 231 TVMRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMR 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +   +PD G+ ++ + V      + I FN K++ +++ +I ++E+
Sbjct: 291 LVSKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 335


>gi|304437931|ref|ZP_07397877.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369071|gb|EFM22750.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 380

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 107/398 (26%), Positives = 191/398 (47%), Gaps = 34/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +SD++  L    + +  K   P+   V + A +G LE++ +  E+     IPA 
Sbjct: 1   MNITLPKSDLIAALQIVSKGLSTKPQTPILSGVYMNAREGQLELQTTNYELGFIVTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  +    L +  RKL    ++S   E+  G    I  G   F L++   ++FP 
Sbjct: 61  IHGTGTAVLPGKYLTEFARKL-PAEEVSINTESSDGL-AEIRSGTVRFTLRTMEVTDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF--HINEEDLKLCAVATDG 178
            +  +    F +   VL  LV+++ FA   EE R     IF    +  E  ++   AT+ 
Sbjct: 119 LQRMDGTLQFTIKDRVLARLVKKSAFACLKEEQRDR-RPIFTGCQLEVEGREVTFAATNV 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237
           HRLAV    +  +  ++  +I+P + + E+ R ++S   S V VS S ++I ++ +++ M
Sbjct: 178 HRLAVKSEQLEEEAGQI-RVIIPARFLEEVTRTMNSDVPSDVHVSCSYNQISVSFDNIYM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCT----NLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           + RLI+G FP+Y+ VIP   D  +R   T        AVDR S+++   +   VKL  + 
Sbjct: 237 TSRLIEGAFPDYRRVIP--QDANIRTKVTLDVAAFSAAVDRASLIARTDQYNIVKLRFAD 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             +C++ ++P++G+A E++        + I FN  YL++ + ++ S     D  +  L  
Sbjct: 295 GMMCISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDS-----DTCILSLQG 349

Query: 353 SN------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           SN      S + IR         ++   N  YV+ P+R
Sbjct: 350 SNEQGVNLSPITIR---------EEADPNYIYVVTPVR 378


>gi|284039727|ref|YP_003389657.1| DNA polymerase III subunit beta [Spirosoma linguale DSM 74]
 gi|283819020|gb|ADB40858.1| DNA polymerase III, beta subunit [Spirosoma linguale DSM 74]
          Length = 379

 Score =  128 bits (321), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 96/346 (27%), Positives = 167/346 (48%), Gaps = 15/346 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGL----LEIKASGPEIEIT 54
           MK  V  S +L+ L H   ++     +P+  + L +    DGL    L + AS  +  +T
Sbjct: 1   MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
             IP   +  GSI + A LL D +R L +            GTE+   +G   + L    
Sbjct: 61  TQIPVEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTEILTDNG--RYKLSGEN 118

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             +FP         S ++ S VL + +  T FA +T+++R  + G+   +N++      V
Sbjct: 119 PIDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATF--V 176

Query: 175 ATDGHRL-AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           ATDGHRL      D+ A  +   SII+PRKA+ ++L+    ++  V    S++       
Sbjct: 177 ATDGHRLIRYRRTDLNASAST--SIIIPRKAL-QLLKASLPENVPVTAEFSQANASFTFG 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              +  RLID  FP+Y+N IP +N   + +  T+L  ++ R+ I ++     ++LSL ++
Sbjct: 234 PTQLICRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKAN 293

Query: 294 KLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            L ++ ++ D   +A E +   Y    M+I FN K + E++ N+S+
Sbjct: 294 SLTISAEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSA 339


>gi|229072955|ref|ZP_04206151.1| DNA polymerase III subunit beta [Bacillus cereus F65185]
 gi|228710201|gb|EEL62179.1| DNA polymerase III subunit beta [Bacillus cereus F65185]
          Length = 381

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 183/356 (51%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSAEI 350


>gi|70725003|ref|YP_251917.1| DNA polymerase III subunit beta [Staphylococcus haemolyticus
           JCSC1435]
 gi|68445727|dbj|BAE03311.1| DNA polymerase III beta chain, sliding clamp subunit
           [Staphylococcus haemolyticus JCSC1435]
          Length = 377

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/351 (25%), Positives = 175/351 (49%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKL-EDDSENKNVIIPGKALSELNKIMSDSDEEIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           +D + ++  +P++G   E +     E   + I FN +Y+++ +  I +DEV
Sbjct: 296 NDVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSRYMMDALKAIDNDEV 346


>gi|82749779|ref|YP_415520.1| DNA polymerase III subunit beta [Staphylococcus aureus RF122]
 gi|82655310|emb|CAI79690.1| DNA polymerase III beta chain [Staphylococcus aureus RF122]
          Length = 377

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP +
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           V+          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 62  VNGEDIVNISETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            D + ++  +P++G   E ++    E   + I FN KY+++ +  I +DEV
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEV 346


>gi|323705849|ref|ZP_08117421.1| DNA polymerase III, beta subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534845|gb|EGB24624.1| DNA polymerase III, beta subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 370

 Score =  127 bits (320), Expect = 2e-27,   Method: Compositional matrix adjust.
 Identities = 89/344 (25%), Positives = 176/344 (51%), Gaps = 9/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ++  +L  +    + +  + T+P+   +LL++ +  + +  +  EI I  +I A 
Sbjct: 1   MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLKSENNKIVMYTTDMEIGIQCSIEAF 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI VS+ +  D+VRKL D     FF+ +E    V I  G + F +      EFP 
Sbjct: 61  IIEDGSIVVSSKVFSDLVRKLPDDT--VFFESDE-SNMVYIKCGLTEFSISGNSSDEFPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +F L   +LK +++ T F++A +  R  L GI   +++  + +  VA DG+R
Sbjct: 118 IPDVIKDVTFSLNQKILKEMIKMTSFSVAQDMARPILTGILMEVSKNTINM--VALDGYR 175

Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +++ +    D +++     S+++P     E+LR++   D  V +S + ++I        +
Sbjct: 176 MSIKKYVSEDPLSKNLDDFSVVIPGTTANELLRVMEDSDDEVSISFTGNQILFEFNDTKV 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L+DG + NY+ VIP      + ++  +L  A+DR S+++S +   +K + +  +L +
Sbjct: 236 ISKLLDGNYMNYKTVIPKDFKSVVIIDKDDLIGAIDRASLLASNKSNLIKFTFNERELVI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +  N + GK  E +N+      ++I FN +YLLE +  I S ++
Sbjct: 296 S-SNSEKGKMSERLNIEIEGNLIEIAFNSRYLLEALRVIDSKKI 338


>gi|116628685|ref|YP_813857.1| DNA polymerase sliding clamp subunit [Lactobacillus gasseri ATCC
           33323]
 gi|311111575|ref|ZP_07712972.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22]
 gi|116094267|gb|ABJ59419.1| DNA polymerase III, beta subunit [Lactobacillus gasseri ATCC 33323]
 gi|311066729|gb|EFQ47069.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22]
          Length = 376

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF       T+  I   ++ F +     +
Sbjct: 61  DDLVVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVRESFQTK--IVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E ++    E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRASITDSII 345


>gi|238853340|ref|ZP_04643720.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4]
 gi|238834028|gb|EEQ26285.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4]
          Length = 376

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/350 (26%), Positives = 171/350 (48%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF       T+  I   ++ F +     +
Sbjct: 61  DDLVVQSTGSIVLPARFFSEIVKKLP-GKDFSFEVRESFQTK--IVSENTEFMINGLDTN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKL 295
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L     
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 296 CMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E ++    E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRASITDSII 345


>gi|317503310|ref|ZP_07961360.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae
           DSM 15606]
 gi|315665569|gb|EFV05186.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae
           DSM 15606]
          Length = 373

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 112/387 (28%), Positives = 186/387 (48%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  S +   L    ++I  KN++P+    L + ++  L+I AS  E  +T  +P S
Sbjct: 1   MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDNENVMTSLVPLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  V    + D V++L +           L  ++   +G  NF  Q+    E+P
Sbjct: 61  ECDGEGSFAVPNRTILDAVKELPEQPLQFEVDIEALTIKILYQNGMYNFTAQN--ADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+   +  +   +AS+ L N + R+ FA AT+E+R  +NGI+F +  + L +  VATDG
Sbjct: 119 HTQAVPDGAHVITMASNSLINNITRSLFATATDELRPVMNGIYFDLTPDYLAI--VATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   D   +     S I+P+K    +  +LS  DS V +   +    +      + 
Sbjct: 177 HKL-VRNQDYTVKSDTPASFILPKKPATLLKNVLSKDDSDVVIKFDDRTTEIRFAEGQLC 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  + S KL ++
Sbjct: 236 CRLIEGNYPNYNSVIP-ENPHNMSIDRKSLIGALRRVLPFASESSQLVRFRIESGKLEVS 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356
            ++ D    A E +   YN   M I F    L EI++N+       DEV F+L D S + 
Sbjct: 295 SEDIDFATSAKEQIVCDYNGPQMSIGFKGSSLQEILNNLDC-----DEVNFQLADPSRAG 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           V +  +  ++       VN   ++MPM
Sbjct: 350 VIVPTEQPEN-------VNVLMLIMPM 369


>gi|227511153|ref|ZP_03941202.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227523340|ref|ZP_03953389.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227085635|gb|EEI20947.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227089531|gb|EEI24843.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 379

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 95/342 (27%), Positives = 169/342 (49%), Gaps = 20/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ R++  + L    R I  K TIP+   + LQA    L +  S  +I I   I   
Sbjct: 1   MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +V+  G+I + A    DIV+KL +        EN    +  I+ G S+F +   
Sbjct: 61  NPDNLLAVESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   S  LA  +LK ++ +T  A++ +E R  L G+ F ++  D    A
Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +   I      ++P K++ E+ R++      + +S++E+++   I 
Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLIELSRMIDDNKEDIILSVTENQVLFTIG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
                 RL++G +P+   +IP S+D  +  +   L  +++R S++S + R   VK+++  
Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295

Query: 293 DKLCMTV--DNPDMGKAIESM---NVYYNECPMDICFNYKYL 329
           +   +T+  ++PD+G   E M   +V  NE  ++I FN  Y+
Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPKSVEGNE--LEISFNPDYM 335


>gi|332685536|ref|YP_004455310.1| DNA polymerase III subunit beta [Melissococcus plutonius ATCC
           35311]
 gi|332369545|dbj|BAK20501.1| DNA polymerase III beta subunit [Melissococcus plutonius ATCC
           35311]
          Length = 376

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/339 (27%), Positives = 175/339 (51%), Gaps = 17/339 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T++R+ +L+ L    R I  K TIP+   V +   D  L +  S  +I I   +   
Sbjct: 1   MKLTIKRTSLLQELQTVQRAISSKTTIPILTGVKIVLADEGLYLTGSNADISIESFLTKE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 ++   GSI + A  L +I+RKL +D   +   + N+    ++I  G ++F +  
Sbjct: 61  DEKAKMTIFKTGSIVLQARFLGEILRKLPEDIVTMEVLENNQ----ISIVSGKADFIVNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P     +     E+   +L  ++  T FA++  E R  L G+ F ++E+  KL 
Sbjct: 117 QDAENYPHLPVIDTKNQMEIPVHLLTKIINETGFAVSMHESRPILTGVHFILSEQ--KLL 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRL+   +  + Q+ +   I++P K++ E+ R   +++  V++S+ E+++    
Sbjct: 175 AVATDSHRLS-QRIIPIEQMVENFDIVIPGKSLQELSRSFVNEEEQVEISIMENQVLFKT 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +++    RL++G +P+   +IP + + E+      L  A++R S++S   R   V+LS+S
Sbjct: 234 KNMYFYSRLLEGNYPDTNRLIPATFNTEVEFYGPKLLSAIERASLLSHEGRNNIVRLSIS 293

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYL 329
            D + +  ++P++GK  ES+N  +     +DI FN  Y+
Sbjct: 294 PDSVILYGNSPEIGKVEESLNYEHITGDTLDISFNPDYM 332


>gi|49476685|ref|YP_034362.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118475780|ref|YP_892931.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al
           Hakam]
 gi|196036084|ref|ZP_03103484.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|196041972|ref|ZP_03109259.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
 gi|196045398|ref|ZP_03112629.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|218901208|ref|YP_002449042.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228918102|ref|ZP_04081630.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930496|ref|ZP_04093496.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931508|ref|ZP_04094418.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228949212|ref|ZP_04111480.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229094601|ref|ZP_04225668.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42]
 gi|229124993|ref|ZP_04254167.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201]
 gi|229187719|ref|ZP_04314855.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1]
 gi|254724148|ref|ZP_05185933.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055]
 gi|301051743|ref|YP_003789954.1| DNA polymerase III subunit beta [Bacillus anthracis CI]
 gi|49328241|gb|AAT58887.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415005|gb|ABK83424.1| DNA polymerase III, beta subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|195991251|gb|EDX55219.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|196023605|gb|EDX62281.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|196027227|gb|EDX65847.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
 gi|218537161|gb|ACK89559.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228595787|gb|EEK53471.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1]
 gi|228658494|gb|EEL14160.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201]
 gi|228688848|gb|EEL42679.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42]
 gi|228810495|gb|EEM56848.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828151|gb|EEM73875.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829215|gb|EEM74852.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841582|gb|EEM86698.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300373912|gb|ADK02816.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis
           str. CI]
          Length = 379

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             +ATD HRLA+ +  I   + +  + +++P K++ E+ +IL   +  V + ++E ++  
Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|302872924|ref|YP_003841557.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B]
 gi|307687877|ref|ZP_07630323.1| DNA polymerase III subunit beta [Clostridium cellulovorans 743B]
 gi|302575781|gb|ADL49793.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 111/393 (28%), Positives = 199/393 (50%), Gaps = 37/393 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T +++++ E +  A + +  K+T+P+   +LL A    L I +S  ++ I     A+
Sbjct: 1   MNFTCDKTNLQEAISIAQKAVTGKSTMPILQGLLLNARGNKLTINSSDIDLGIETKCNAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   GSI V + L  DI+RKL +   QI    E   GT + I+   S F L      EFP
Sbjct: 61  IKEEGSIVVDSKLFGDIIRKLPNSEIQIKSISE---GT-IEITCQRSRFTLVHMKADEFP 116

Query: 120 STK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                +E+ + S  +   ++KN++  T FA+A +E R  L GI F I    L L  VA D
Sbjct: 117 QLPYIDEDEIIS--IPQKLIKNMIRSTIFAIAIDETRPILTGILFEIKNRTLNL--VALD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G RLA+ +  I  +  +  S ++P K + E+++IL   +  V ++ + + I  N+    +
Sbjct: 173 GFRLALKKETIDTE--QEFSAVIPGKTLHEVVKILED-EGDVDITFTTNHILFNLGETKV 229

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLC 296
             RL++GEF  YQ +IP  ++  + VN  +L  +++R S++S       +K ++S D + 
Sbjct: 230 VSRLLEGEFIKYQAIIPEEHELSISVNRASLLNSIERASLVSKDASSNLIKFNISEDNIV 289

Query: 297 MTVDNPDMGKAIESMNVYY---NECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDS 352
           +T  N  +G   E +++     NE  + I FN KYL++ +      +++++E +  +  S
Sbjct: 290 IT-SNSQLGDVREEVSIKLLKGNE--LQIAFNSKYLIDAL------KIMEEETITLQFTS 340

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + S   I+  + D         N  Y+++P+RI
Sbjct: 341 AVSPCIIKNIEND---------NVIYLVLPVRI 364


>gi|30018280|ref|NP_829911.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579]
 gi|228942639|ref|ZP_04105171.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975569|ref|ZP_04136121.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982205|ref|ZP_04142494.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407]
 gi|229130736|ref|ZP_04259689.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4]
 gi|29893820|gb|AAP07112.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579]
 gi|228652753|gb|EEL08638.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4]
 gi|228777557|gb|EEM25835.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407]
 gi|228784179|gb|EEM32206.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817065|gb|EEM63158.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326937799|gb|AEA13695.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 381

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 183/356 (51%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 350


>gi|310657318|ref|YP_003935039.1| DNA polymerase III subunit beta [Clostridium sticklandii DSM 519]
 gi|308824096|emb|CBH20134.1| DNA polymerase III subunit beta [Clostridium sticklandii]
          Length = 363

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 98/386 (25%), Positives = 183/386 (47%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITV ++++   +    + +  KNTI +   +L +  +G L + ++  EI +   I A 
Sbjct: 1   MKITVNQNELQSAINMTLKGVSNKNTIEILKGILFETYEGKLMLTSNNLEIGVQTVIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + + A ++ DIVRKL          E  +   V IS     F ++ F   +FP 
Sbjct: 61  IQREGKVVIDAKIISDIVRKLPSSDVCLDVDETHI---VKISSTSLEFNIKGFSGEDFPI 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E  Y  E++S + K +V +T FA++ +E +  L G         + +  VA DG R
Sbjct: 118 PVSIEENYYKEISSDIFKEMVRKTSFAVSLDETKPLLMGELIEFKNNSINM--VAIDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  +           IIVP K + +I R++      +K+   E      I    ++ R
Sbjct: 176 LAIKYIK-DDNFVTDSKIIVPGKTLVDISRMIPPSVDKIKLGFDEKHASFIIGETILTTR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GEF NY  +IP     +L+++  +   A+DR  +++  +   +K+ +S D L ++  
Sbjct: 235 LLEGEFINYSQIIPKEFSTKLKIHTKDFLYALDRACLVA--KNNLIKIDISDDNLKISSK 292

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSVFI 359
           N ++G   E++ +      ++I FN KY ++ +      + +D+E +   L+++ S   +
Sbjct: 293 NDEIGNLEENIFIELEGSNLEIAFNAKYFMDAL------KTIDEEYISLELNTNVSPCIL 346

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D DS           Y+L+P+RI
Sbjct: 347 KPYDDDSYT---------YLLLPVRI 363


>gi|52145207|ref|YP_081621.1| DNA polymerase III subunit beta [Bacillus cereus E33L]
 gi|228988719|ref|ZP_04148804.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229159051|ref|ZP_04287107.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342]
 gi|51978676|gb|AAU20226.1| DNA polymerase III, beta subunit [Bacillus cereus E33L]
 gi|228624470|gb|EEK81241.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342]
 gi|228771031|gb|EEM19512.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 379

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 183/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             +ATD HRLA+ +  I     +  + +++P K++ E+ +IL   +  V + ++E ++  
Sbjct: 175 TCIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|256419662|ref|YP_003120315.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588]
 gi|256034570|gb|ACU58114.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588]
          Length = 372

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 91/343 (26%), Positives = 160/343 (46%), Gaps = 6/343 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I     +P+    L   +   L + A+  E  +   +   
Sbjct: 1   MKFIVSSSTLLKQLQQISGVINSNTVLPILEDFLFLIDKNELTVVATDLETVMKVKLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G I + A +L D ++ L D         N    E+   +G      ++ PE+ FP 
Sbjct: 61  AKESGRICIPAKILMDSLKNLPDQPLTFHIDLNSYAVEITSDNGKYKVMGEN-PEN-FPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   SF ++++ L   + +T FA++ +++R  + G+FF +    L    VATD HR
Sbjct: 119 EPAADDTTSFTVSATALVTAINKTLFAVSNDDLRPAMTGVFFELTPTSLTF--VATDAHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V  V    +  K  + IVP+K +  +   L   DS +K++ S++   +  +   M  R
Sbjct: 177 L-VKYVRTGVECPKAETFIVPKKPLNLLKSALPDNDSEIKIAYSQNHFFVMHDGAQMICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  FP+Y+ VIP  N   L V  ++ + A+ RVS+ ++     V LS++  +L ++  
Sbjct: 236 LIDARFPDYKVVIPKDNPYRLTVAKSDFQNALKRVSVFANKSTNQVALSITGSELQLSAQ 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + D   +  E M+  Y    M I FN K+L+E+++    DE+ 
Sbjct: 296 DVDFSFEGNERMSCQYTGDDMQIAFNAKFLIEMLNAAEGDEIT 338


>gi|217967933|ref|YP_002353439.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337032|gb|ACK42825.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 107/397 (26%), Positives = 186/397 (46%), Gaps = 42/397 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ++ D+ + L      +  K TIP+  +V ++A +  L ++ +  EI +  ++P  
Sbjct: 1   MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSFP 114
           V+  G + + A L  D++ KL          E  L   VN      I  G S+  +Q   
Sbjct: 61  VEEPGEVCLPASLFIDVIGKL---------PEVTLEIHVNERNRAVIHAGYSDIEIQGES 111

Query: 115 ESEFPSTKEE---EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
             EFP  +     EY  SF+    +    +++T FA A +EI+  L G+ F   E   KL
Sbjct: 112 TEEFPKVEIGNIGEYHASFD--RILFAKAIKQTIFAAAEDEIKQVLTGVLFEGKEG--KL 167

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHL 230
             VA DGHRLA+  ++I    A    IIVP K++ E  +I++ + D  V ++  ++++  
Sbjct: 168 NMVAVDGHRLALKTLEIEKDFA---PIIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVF 224

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
           N   +    RL+ G+FP Y  +IP       + N  +    + R+ + + + +   VK+S
Sbjct: 225 NCGEIYFISRLLQGQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKIS 284

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           LSS+++ ++    + G A E +      +  ++I FN +YL++ +DN        DEVV 
Sbjct: 285 LSSEEVVISTLPSERGFAKEVLPAEVEIDGNLEIGFNVEYLMDPLDNADW-----DEVVM 339

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  S      I   + +         N  Y+LMP+R+
Sbjct: 340 RFTSDLGPALITSPEDE---------NYTYILMPVRL 367


>gi|253573853|ref|ZP_04851195.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846330|gb|EES74336.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 380

 Score =  127 bits (319), Expect = 3e-27,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 185/358 (51%), Gaps = 27/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI + + D+ E + H  + I  + TIP+   + L  N   + + AS  +I I   IPA 
Sbjct: 1   MKIRILKHDLNESIQHVSKAISSRTTIPILTGIKLDVNFQGMTLTASDTDISIQAFIPAE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL   ++I    E + G +  I  G ++  +  
Sbjct: 61  DQEKQIVQVERPGSVVLPAKFFVEIIKKLP-SSEIEM--EVQDGFQTFIRSGSTDIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E      +   +LKN++ +T F+++T E    L G+ +++ +   K  
Sbjct: 118 LDPEEFPVLPSIEENQVISIPGDLLKNMIRQTVFSISTNETSPILTGVLWNLADNQFKF- 176

Query: 173 AVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
            VATD HRLA  +A +D  A+  +  +I++  K + E+ +I+  +++ V++ ++++++  
Sbjct: 177 -VATDRHRLASRIAGLD-DAEGVRFSNIVIAGKTLNELSKIIPDQNTRVEIVVADNQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS------VRIQ 284
            I+ +    R++DG +P+   +IP +   EL ++   L  ++DR  ++S       VR+Q
Sbjct: 235 KIDRVLFYTRILDGTYPDTSKIIPTTYKTELILDTKKLSDSIDRAYLLSREEKTNIVRLQ 294

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
               ++    + ++  + ++GK  E ++V +++  P+ I FN KY+L+++  + S+++
Sbjct: 295 ----TMEDGTIEISSSSSELGKVTEQLDVAHFSGDPLRISFNSKYMLDVLKVVESEQL 348


>gi|288803394|ref|ZP_06408827.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18]
 gi|288334214|gb|EFC72656.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18]
          Length = 374

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 184/370 (49%), Gaps = 23/370 (6%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75
           R+I  KN++P+    L + +DG L I AS  E  + G +  +++ C   G+  V+ H + 
Sbjct: 19  RVINSKNSLPILDCFLFEVHDGQLTITASDSENVMRGTL--NLESCEGEGNFAVNNHTIL 76

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134
           D V++L +         +E+   V   +G  NF +      E+P  +   +   +  L +
Sbjct: 77  DAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPI--LGADEYPKAQSVSDNATTITLQA 134

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
             L + + R+ FA A +E+R  +NG++F + E+ L +  VA+DGH+L   ++  +   + 
Sbjct: 135 EKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDGLAI--VASDGHKLVRNKIFSIKSDSP 192

Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             S ++P+K    +  +LS     V +   E    ++    +++ RLI+G++PNY +VIP
Sbjct: 193 A-SFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLACRLIEGKYPNYNSVIP 251

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313
             N  ++ ++  +L  A+ RV   +S   Q ++  +S+  L +  ++ D    A ES+  
Sbjct: 252 QDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSAGLLELNAEDIDFATSAKESVTC 311

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
            Y   PM I F    +L+I++N+ SD+V    V+   D S + V + G   +++      
Sbjct: 312 EYGGNPMSIGFKGSSMLDILNNLESDDV----VIQLADPSRAGVIVPGTQPENE------ 361

Query: 374 VNAFYVLMPM 383
            +   ++MPM
Sbjct: 362 -DILMLIMPM 370


>gi|229035148|ref|ZP_04189094.1| DNA polymerase III subunit beta [Bacillus cereus AH1271]
 gi|228728214|gb|EEL79244.1| DNA polymerase III subunit beta [Bacillus cereus AH1271]
          Length = 379

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 183/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN   T+  I+ G S F L 
Sbjct: 61  DDGKEIVEVAQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             +ATD HRLA+ +  I     +  + +++P K++ E+ +IL   +  V + ++E ++  
Sbjct: 175 TCIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 TLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|15618258|ref|NP_224543.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae CWL029]
 gi|4376617|gb|AAD18487.1| DNA Polymerase III (beta chain) [Chlamydophila pneumoniae CWL029]
          Length = 366

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS    +  G    I+ G S F L S  + +FP
Sbjct: 61  VYEKGAISIPSKRFFQLVKELTEANLEIS----SSAGEMAQITSGSSCFRLLSMEKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG 
Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + ++    +     I+P KAV EI++ + S +    + L + +I +  ++  +  
Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEAAIFLDQDKIAVECDNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V   +    DS N  +  
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +  +  +V+MPMR+
Sbjct: 350 ------------DSASGLFVIMPMRL 363


>gi|15835873|ref|NP_300397.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae J138]
 gi|33241682|ref|NP_876623.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae TW-183]
 gi|14194707|sp|Q9Z8K0|DPO3B_CHLPN RecName: Full=DNA polymerase III subunit beta
 gi|8978712|dbj|BAA98548.1| DNA polymerase III (beta chain) [Chlamydophila pneumoniae J138]
 gi|33236191|gb|AAP98280.1| DNA-directed DNA polymerase III beta chain [Chlamydophila
           pneumoniae TW-183]
          Length = 366

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS    +  G    I+ G S F L S  + +FP
Sbjct: 61  VYEKGAISIPSKRFFQLVKELTEANLEIS----SSAGEMAQITSGSSCFRLLSMEKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG 
Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + ++    +     I+P KAV EI++ + S +    + L + +I +  ++  +  
Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEATIFLDQDKIAVECDNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V   +    DS N  +  
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVSLGIS---DSYNPGIIT 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +  +  +V+MPMR+
Sbjct: 350 ------------DSASGLFVIMPMRL 363


>gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames]
 gi|47525256|ref|YP_016605.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183041|ref|YP_026293.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne]
 gi|65317470|ref|ZP_00390429.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bacillus anthracis str. A2012]
 gi|167635102|ref|ZP_02393419.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|167641746|ref|ZP_02399989.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|170689459|ref|ZP_02880649.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|170707580|ref|ZP_02898033.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|177655289|ref|ZP_02936843.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190569279|ref|ZP_03022173.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812680|ref|YP_002812689.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229601421|ref|YP_002864659.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
 gi|254687069|ref|ZP_05150927.1| DNA polymerase III subunit beta [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735165|ref|ZP_05192875.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742126|ref|ZP_05199813.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B]
 gi|254761356|ref|ZP_05213378.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia
           94]
 gi|30253518|gb|AAP24060.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames]
 gi|47500404|gb|AAT29080.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49176968|gb|AAT52344.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne]
 gi|167510300|gb|EDR85703.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|167529576|gb|EDR92326.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|170127576|gb|EDS96450.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|170666561|gb|EDT17334.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|172080216|gb|EDT65308.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190559586|gb|EDV13577.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005199|gb|ACP14942.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229265829|gb|ACQ47466.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
          Length = 379

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             +ATD HRLA+ +  I   + +  + +++P K++ E+ +IL   +  V + ++E ++  
Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|87301552|ref|ZP_01084392.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701]
 gi|87283769|gb|EAQ75723.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701]
          Length = 380

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 97/352 (27%), Positives = 182/352 (51%), Gaps = 15/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++P
Sbjct: 1   MKLVCSQAELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ + L  +IV +L   + IS   E E   +V I+    ++ ++     +F
Sbjct: 61  ASVESSGTITLPSRLFGEIVARLSSDSPISLSCE-EGQEQVEITSRSGSYQMRGLSAEDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +      L    L   +  T FA + +E +  L G+   + ++DL+ CA ATDG
Sbjct: 120 PDLPLVQTGTPLRLQPDALVKGLRATLFASSGDEAKQLLTGVHLGLADQDLE-CA-ATDG 177

Query: 179 HRLAVAEVDIV---AQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLN 231
           HRL+V  ++     A+    P ++ VP +++ E+ R+LS+  S   VSL   R   + L 
Sbjct: 178 HRLSVLRLEKAFSGAEDGSEPFAVTVPARSLRELERLLSACSSDDPVSLYCDRGQVVFLW 237

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS-- 289
            + + ++ R +DG +PNY+ +IP    + L ++     QA++RV++++      VKLS  
Sbjct: 238 ADQV-LTSRSLDGTYPNYRQLIPDRFSRTLELDRRGFVQALERVAVLADQHNNVVKLSSD 296

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +S +L ++ D  D+G   E +    +  P++I FN +Y+L+ +  ++ + V
Sbjct: 297 PASGQLHISADAQDVGSGSEDLPAVISGDPIEIAFNVRYMLDGLKAMTPERV 348


>gi|332186935|ref|ZP_08388676.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
 gi|332012945|gb|EGI55009.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
          Length = 374

 Score =  127 bits (318), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 81/260 (31%), Positives = 133/260 (51%), Gaps = 18/260 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ VER  ++  +     ++E + TIPV  ++L++   G L +  +  +++++  +PA 
Sbjct: 1   MKVEVERDALMGAVRAVIDVVEARTTIPVLSNMLVEVEGGSLTLTGTDLDLQVSATVPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN------ELGTEVNISHGDSNFYLQSFP 114
            ++    TV A       RKLQ  A  S FK        +    V +  G     L +  
Sbjct: 61  GEM--KTTVDA-------RKLQ-AAVDSLFKGKVTIAPIDGRAAVTLKAGRGQRILPTLS 110

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            ++FP     E   SF + S+ L  +++    AM++EE RYYL GI+ H  E  L+    
Sbjct: 111 ANDFPKRGPIEDARSFTMPSADLSRILDTASVAMSSEETRYYLCGIYIHPYEGRLR--GA 168

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRL   EVD+ A    +  +I+PRKAVG + ++L+  D  V+V ++ + +   I  
Sbjct: 169 ATDGHRLVRVEVDLPAGAEMIKGVILPRKAVGHLRKLLAKHDGPVEVEVTTAAMAFQIGG 228

Query: 235 LSMSVRLIDGEFPNYQNVIP 254
           + +  +LID  FP+Y  VIP
Sbjct: 229 VRVLTKLIDDTFPDYNRVIP 248


>gi|325106471|ref|YP_004276125.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145]
 gi|324975319|gb|ADY54303.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145]
          Length = 374

 Score =  126 bits (317), Expect = 4e-27,   Method: Compositional matrix adjust.
 Identities = 95/350 (27%), Positives = 172/350 (49%), Gaps = 20/350 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  + +L+ L      +     +P+  + L +  +G L I A+  +  +  ++   
Sbjct: 1   MRFIVSTTTLLKHLQSVSGALSSSAVLPILENFLFEIKEGNLIISATDLQTSMITSLAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G I V + +L D ++ L +  Q   F  +E    + IS GD  + L      +FP 
Sbjct: 61  AKEGGKIAVPSKILLDTLKTLPE--QPIAFSVDEQTYAIEISAGDGKYKLSGENGEDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +  L +S L   + +T FA++ +E+R  + G+F  ++ +D+    VATD H+
Sbjct: 119 IPTVDEASTVNLPASALSEAINKTIFAVSNDELRPAMTGVFCQLSPQDITF--VATDAHK 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D  ++ +   S I+P+KA+  +   L S+D +V V  + +       ++S+  
Sbjct: 177 LVRYRRKDTKSESST--SFILPKKALNLLKSALPSEDVNVAVEYNSTSAFFKFANISLIC 234

Query: 240 RLIDGEFPNYQNVIPCSN------DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           RLID  +P+Y+ VIP +N      DK L +NC      + RV I ++     V+L +S  
Sbjct: 235 RLIDERYPDYEAVIPQNNPNKLILDKSLFLNC------LKRVVIFANKTTHQVRLKISGS 288

Query: 294 KLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +L ++ ++ D   +A E +   YN   M+I FN K+L+E+++NIS DEV 
Sbjct: 289 ELHISSEDLDFANEAHERIGCQYNGEDMEIGFNAKFLIEMLNNISGDEVT 338


>gi|165873018|ref|ZP_02217639.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
 gi|254755964|ref|ZP_05207996.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum]
 gi|164711230|gb|EDR16786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
          Length = 379

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 184/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQGVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             +ATD HRLA+ +  I   + +  + +++P K++ E+ +IL   +  V + ++E ++  
Sbjct: 175 TCIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS
Sbjct: 235 RTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLS 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 TLEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|227889155|ref|ZP_04006960.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227850384|gb|EEJ60470.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 376

 Score =  126 bits (317), Expect = 5e-27,   Method: Compositional matrix adjust.
 Identities = 94/350 (26%), Positives = 172/350 (49%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D  L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEKLTLTGSDTDISIEIQIPVN 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSKGSIVLPARFFSEIVKKLP-GKDFSF--EVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
            + +  D+P++G   E +     E   + I FN  YL E +    +D ++
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRASITDSII 345


>gi|308066840|ref|YP_003868445.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681]
 gi|305856119|gb|ADM67907.1| DNA polymerase III, beta chain [Paenibacillus polymyxa E681]
          Length = 380

 Score =  126 bits (317), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 195/396 (49%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKI++ ++ + E + H  + I  + TIP+   + L  N   + + AS  +I I   IP  
Sbjct: 1   MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GS+ + A    +I++KL    +I    +++  T   IS G +   +  
Sbjct: 61  DGDQTVVQIEQPGSVVLPAKFFVEIIKKL-PSQEIHMEVKDQFQT--FISSGATEIQIVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E      +   +LKN++++T F+++T E    L G+ +++ E +LK  
Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +  ++  +  ++++  K + E+ RI+  ++  V + ++++++   
Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           ++ +    R++DG +P+   +IP S   EL V+  +L +++DR  ++S   +   VK+ S
Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L +  L ++  + ++GK  E + V   E  P+ I FN KY+L+++  I S     +++  
Sbjct: 296 LENGGLEISSSSSELGKVREEVTVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D           NA Y+++P R
Sbjct: 351 AFTGIMSPIILKPADSS---------NALYIILPYR 377


>gi|229176166|ref|ZP_04303658.1| DNA polymerase III subunit beta [Bacillus cereus MM3]
 gi|228607325|gb|EEK64655.1| DNA polymerase III subunit beta [Bacillus cereus MM3]
          Length = 379

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 94/355 (26%), Positives = 183/355 (51%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DNGKEIVEVAQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IISGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             +ATD HRLA+ +  I   IA     S+++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 175 TCIATDSHRLALRKAKIEG-IADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVL 233

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 234 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 293

Query: 289 S-LSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           S L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 294 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 348


>gi|228474178|ref|ZP_04058915.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119]
 gi|314935202|ref|ZP_07842555.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|228271873|gb|EEK13210.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119]
 gi|313656537|gb|EFS20276.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 376

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 177/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 1   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNNVILTGSDSEISIEITIPKQ 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G  +      +  T   I+ G S F L  
Sbjct: 61  VDGEDIVDITETGSVVLPGRFFVDIIKKLP-GKDVKLSTNEQFQTL--ITSGHSEFNLSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I  +D +L 
Sbjct: 118 LDPEQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLI--QDNELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  + ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 176 CTATDSHRLAVRKLKLEDE-SENKNVIIPGKALSELNKIMSDNDEDIDIFFASNQVLFKV 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 235 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 294

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           ++ + ++  +P++G   E +     E   + I FN KY+++ +  I ++EV
Sbjct: 295 NEVIELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAIDNEEV 345


>gi|33862274|ref|NP_893834.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9313]
 gi|33640387|emb|CAE20176.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9313]
          Length = 388

 Score =  126 bits (316), Expect = 6e-27,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 198/402 (49%), Gaps = 33/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  A+ 
Sbjct: 1   MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+    +E G +V +     ++ ++     +F
Sbjct: 61  ASVESSGAITLPARLLGEIVARLSSDSPITL-ATDEAGEQVELKSSSGSYQMRGMSADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + ++ +  L   +  T FA +++E +  L G+  H + + ++  A ATDG
Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKAME--AAATDG 177

Query: 179 HRLAV--------AEVDIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SE 225
           HRLAV         E  + +++    +  S+ +P +++ E+ R+++      +VSL   +
Sbjct: 178 HRLAVLSLADALAVETTVSSEMDDEGENFSVTLPSRSLREVERLIAGWRGDDQVSLFCDK 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++        ++ R +DG +PNY+ +IP    +   V+      A++R+++++      
Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFIAALERIAVLADQHNNV 297

Query: 286 VKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           VK+S   +S+ L ++ D  D+G   ES++  +    + I FN +Y+L+ +  + S     
Sbjct: 298 VKVSGDNTSELLQISADAQDVGSGSESLSAEFTGDAVQIAFNVRYVLDGLKVMDS----- 352

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D +V R ++  +   I  KD D        +   Y++MP++I
Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386


>gi|282889708|ref|ZP_06298247.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500282|gb|EFB42562.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 376

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 101/385 (26%), Positives = 186/385 (48%), Gaps = 13/385 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   ++  L+     I+ +K TIP+  + L++A +G L + A+   + I     A 
Sbjct: 1   MKFVISTQELNFLINKCLNIVSQKATIPILSNFLMEAKNGELILTATDLTVGIRCHTEAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  + A     ++R+L     +     +   T+V  S   S F L    +SEFPS
Sbjct: 61  ILEEGATALPAKRFAQLIRELT-AVNVEIATNDNETTQV--SADSSRFKLHGMNKSEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F++    LK+++ RT FA++ ++ R+ L G+F  I E   K     TDG R
Sbjct: 118 LPQMDGAVQFKIPEGDLKDMLFRTAFAVSRDDNRFALTGVFMQIMEG--KAIFAGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+   + +   +A   + I+P KAV EIL+ LS  +    V L   +I +   +  +  +
Sbjct: 176 LSRTHLSLGLDVAFNGNYIIPIKAVEEILKNLSD-NGEATVYLMHDKIAIEASNTMLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ G++P+   VIP   +  L ++   L   + +VS+ ++    +V+ + +  +L +  +
Sbjct: 235 LLSGDYPDVSRVIPNQLETVLSLHREELITLLRQVSLFTADTSHSVRFTFNEGELRLAAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G+   SM V Y    ++I FN  Y L+I+ + S  E V   +    D  N  V   
Sbjct: 295 TMEIGEGKVSMPVNYTGPRLEIAFNPIYFLDILRH-SKGETVTMGLT---DPFNPGVI-- 348

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             DK+  +  ++ V+  +VLMPMR+
Sbjct: 349 -TDKEGVSQINSSVSPLFVLMPMRL 372


>gi|300727972|ref|ZP_07061350.1| DNA polymerase III, beta subunit [Prevotella bryantii B14]
 gi|299774814|gb|EFI71428.1| DNA polymerase III, beta subunit [Prevotella bryantii B14]
          Length = 374

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 99/346 (28%), Positives = 166/346 (47%), Gaps = 10/346 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           MK TV  + +   L    ++I  KN++ +    L    D  L I AS  E  ++ T AI 
Sbjct: 1   MKFTVSSTALSSRLNTLSKVINSKNSLAILDSFLFHITDNQLTITASDRENVMQTTIAI- 59

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V+  G   +  H++ D VR+L +              ++   +G  NF  Q+    EF
Sbjct: 60  ENVEGTGDFCIPNHVILDAVRELPEQPLNFDIDLESFAIKILYQNGLYNFTAQN--AEEF 117

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P  +  E+        +S+L + + R+ FA A +E+R  +NGI+F +  + L +  VA+D
Sbjct: 118 PPVQHIEDGATEITAEASILVDNINRSLFATANDELRPVMNGIYFDLTPDSLSI--VASD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GH+L V   +   +     S ++P+K    +  +LS  D  V +  ++    +     ++
Sbjct: 176 GHKL-VRNQNFTIKNDIPASFVLPKKPATLLKNVLSKDDGDVTIKFNDRNAEIIFTDGTL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  L   KL +
Sbjct: 235 NCRLIEGRYPNYNSVIPKDNPNHVTIDRKSLLSAIRRVLPFASESSQLVRFHLEMGKLEV 294

Query: 298 TVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +  + D   A  E +   Y   PM I F    LLEI++NI S+EVV
Sbjct: 295 SSQDLDFATAAKEHLTCEYTNKPMSIGFKGSSLLEILNNIDSEEVV 340


>gi|304382374|ref|ZP_07364876.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii
           DSM 16973]
 gi|304336491|gb|EFM02725.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii
           DSM 16973]
          Length = 361

 Score =  126 bits (316), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 105/372 (28%), Positives = 179/372 (48%), Gaps = 27/372 (7%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75
           R+I  KN++P+    L + ++G L I AS  E  +   I   +D C   G+  V   ++ 
Sbjct: 6   RVINSKNSLPILDCFLFEVSNGQLSITASDSENVMKTTI--QLDECDGNGNFAVPNRIIL 63

Query: 76  DIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELA 133
           D VR+L +    I F  EN     + I + +  ++  +    E+P T    E      + 
Sbjct: 64  DAVRELAEQPLSIEFTPEN---YTIKIVYQNGVYHFNAQSAEEYPKTTPITEGATVITID 120

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           SSVL + + R  FA A +E+R  +NGI+F +  E L +  VA+DGH+L   ++  +    
Sbjct: 121 SSVLGDNLSRCLFATAQDELRPVMNGIYFDLTPESLAI--VASDGHKLVRNKLLNIHN-- 176

Query: 194 KMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
           +MP + I+P+K  G +  ILS     V +        ++     +S RLI+G +PNY +V
Sbjct: 177 EMPATFILPKKPAGILKNILSKDGGDVIIKFDGRNAEISFADGFLSCRLIEGRYPNYNSV 236

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESM 311
           IP +N   + ++  +L  A+ RV   +S   Q ++  +   KL ++ ++ D    A ES+
Sbjct: 237 IPQNNPNRVTIDRKSLLGALRRVLPFASDSSQLIRFHIEGGKLELSSEDIDFATSAKESV 296

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
              Y   PM I F    L EI+ N+ S+EV    +V   D S + + + G        ++
Sbjct: 297 TCEYIGTPMSIGFKGSSLSEILSNLESEEV----IVELADPSRAGIIVPG-------TQE 345

Query: 372 NKVNAFYVLMPM 383
              +   ++MPM
Sbjct: 346 ENTDVLMLIMPM 357


>gi|229015407|ref|ZP_04172413.1| DNA polymerase III subunit beta [Bacillus cereus AH1273]
 gi|229026931|ref|ZP_04183254.1| DNA polymerase III subunit beta [Bacillus cereus AH1272]
 gi|228734389|gb|EEL85060.1| DNA polymerase III subunit beta [Bacillus cereus AH1272]
 gi|228745886|gb|EEL95882.1| DNA polymerase III subunit beta [Bacillus cereus AH1273]
          Length = 381

 Score =  125 bits (315), Expect = 7e-27,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 185/358 (51%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEVVEIEQSGSIVLQAKYFSEIVKKLPKEIVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ ++P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLEISSNSPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|327475229|gb|AEA77209.1| DNA polymerase III beta subunit [Exiguobacterium sp. EPVM]
          Length = 379

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/364 (25%), Positives = 182/364 (50%), Gaps = 39/364 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M +T++R   ++ +    + +  + TIP+   + L+A+   L +  S  EI I   IP  
Sbjct: 1   MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106
                   +   GS+ ++A  L +IV+KL           NE+  EV+      I  G +
Sbjct: 61  EGGIELIQIQRAGSVVLNARFLGEIVKKL---------PTNEVTLEVSPNFMTRIESGQA 111

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
            F+L      E+P   E      F L + +LK ++ +T FA++ +E R  L G+ F  + 
Sbjct: 112 EFHLNGLDPDEYPRLPELSSERRFYLPADLLKTIIRQTSFAVSAQETRPVLTGVNF--SA 169

Query: 167 EDLKLCAVATDGHRLAVAEV------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
           E   L  VATD HRLA+         D+  Q     +++VP +++ E+ ++L  ++  V+
Sbjct: 170 EKGFLTCVATDSHRLALRRARFETDNDLTFQ-----NVVVPGRSLNELAKLLDREELPVE 224

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + L++ +I   ++++S   RL+DG +P+   +IP      +R+N  +  QA+DR S+++ 
Sbjct: 225 IVLTDQQILFRMKNISFFSRLLDGAYPDTSRLIPEEYRTAVRLNAKDFLQAIDRASLLAR 284

Query: 281 V-RIQAVK-LSLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNIS 337
             R   +K ++  +  + ++  +P++GK  E +++   E   + I FN K++++ +  + 
Sbjct: 285 ADRNNVIKFVAEEATTVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALD 344

Query: 338 SDEV 341
           + E+
Sbjct: 345 ASEI 348


>gi|297564486|ref|YP_003683458.1| DNA polymerase III subunit beta [Meiothermus silvanus DSM 9946]
 gi|296848935|gb|ADH61950.1| DNA polymerase III, beta subunit [Meiothermus silvanus DSM 9946]
          Length = 366

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 167/344 (48%), Gaps = 20/344 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  + E LG   R+I  +++ P+  ++ ++  +  L IK +  EI++   +PA 
Sbjct: 1   MEVRIPKRTLAEGLGILERVIPSRSSNPILTYLPIELGNKGLVIKGTNGEIDLEVHLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-------SF 113
               G + V A   + IVR L  G  +    +N       +    +NF  Q        +
Sbjct: 61  TQGEGHVLVPAQPFFQIVRSL-PGELVEMVIKNVSSAGGGMELSSANFRTQLSTASPEGY 119

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           PE  F S  EE       L ++ L   + +  +A +TEE R    G+   ++ + L+  A
Sbjct: 120 PELSFLSQSEER------LPAAKLAQAITQVRYAASTEEYRAIFRGVQLELSPKGLR--A 171

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VA+DG RL+    D+   +      ++P K+  EI+R+    +  V + + E  + L  E
Sbjct: 172 VASDGFRLS--RYDLPMHLVSSRKFVIPAKSADEIVRVFKDTEGEVSLGVGEGSLTLIGE 229

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ MSV+L++GEFP+Y  VIP S   E  ++   LR+++ RV+++S      V L  + D
Sbjct: 230 AVRMSVKLMEGEFPDYGRVIPQSFILEATLSAERLRESLKRVAVLSDRNNHRVDLLFAQD 289

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNI 336
           +L M V   D G+  E + +    E  + + FN +YL++ +  I
Sbjct: 290 RLEM-VSEGDYGQGREEIALEAVGEPQLMVAFNAQYLIDALSPI 332


>gi|227508129|ref|ZP_03938178.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227192358|gb|EEI72425.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 379

 Score =  125 bits (315), Expect = 8e-27,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 173/354 (48%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ R++  + L    R I  K TIP+   + LQA    L +  S  +I I   I   
Sbjct: 1   MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  G+I + A    DIV+KL +        EN    +  I+ G S+F +   
Sbjct: 61  NPDNLLAIESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   S  LA  +LK ++ +T  A++ +E R  L G+ F ++  D    A
Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +   I      ++P K++ E+ R++      + +S++E++    I 
Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLVELSRMIDDNKEDIILSVTENQALFTIG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
                 RL++G +P+   +IP S+D  +  +   L  +++R S++S + R   VK+++  
Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295

Query: 293 DKLCMTV--DNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +   +T+  ++PD+G   E M   +V  NE  ++I FN  Y+ + + + S   +
Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPRSVEGNE--LEISFNPDYMKDALRSFSQSTI 347


>gi|269303215|gb|ACZ33315.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 366

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 99/386 (25%), Positives = 187/386 (48%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+I++ +   + +V++L +   +IS    +  G    I+ G S F L S  + +FP
Sbjct: 61  VYEKGAISIPSKRFFQLVKELTEANLEIS----SSAGEMAQITSGSSCFRLLSMEKEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG 
Sbjct: 117 MLPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + ++    +     I+P KAV EI++ + S +    + L + +I +  ++  +  
Sbjct: 175 RLAKIDAEVTLDKSFSGEYIIPIKAVEEIIK-MCSDEGEATIFLDQDKIAVECDNTLLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T 
Sbjct: 234 KLLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +G+   SM V Y+   ++I FN  + L+I+ + S DE+V   +    DS N  +  
Sbjct: 294 NCTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKH-SKDELVCLGIS---DSYNPGIIT 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +  +  +V+MPMR+
Sbjct: 350 ------------DSASGLFVIMPMRL 363


>gi|210634751|ref|ZP_03298279.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279]
 gi|210158691|gb|EEA89662.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279]
          Length = 367

 Score =  125 bits (315), Expect = 9e-27,   Method: Compositional matrix adjust.
 Identities = 103/389 (26%), Positives = 187/389 (48%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S + + +    + I   +T+P+   VL++A DG+LE + S   I I   I A 
Sbjct: 1   MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119
           VD  G + +   +L +IV+ L D A + F    EL   +V I+   S F L +    +FP
Sbjct: 61  VDEEGQVVIPCKMLSNIVKTLPD-APVEF----ELSERQVTITCERSAFRLNTLDAGDFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    S EL +++L  +V R     +T++ R  LNG++  +    ++L  VATD +
Sbjct: 116 EFPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSY 173

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV +  +  + +     + VP  A  + L I   +  S+ +  +++++     + +  
Sbjct: 174 RLAVCDTQVETSTLEGSFELNVPADAFNDALAITGGQ-GSILIGSTDTQVVFVAGNTTYV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R I+G +PNY+ ++P +    ++++   L  A+ RVS ++     AVK  +S++   M 
Sbjct: 233 ARRIEGVYPNYKALLPAACATTVKIDVAALTSALKRVSTVAQAN-SAVKFDISTETGSMV 291

Query: 299 VD--NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + D   A  ++ V        I FNY Y+   ++ +S ++    E+   L S N +
Sbjct: 292 LSAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQA 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  D         K+N  Y++MP+RI
Sbjct: 348 GVFKSYD---------KINYLYLVMPVRI 367


>gi|125974857|ref|YP_001038767.1| DNA polymerase III subunit beta [Clostridium thermocellum ATCC
           27405]
 gi|125715082|gb|ABN53574.1| DNA polymerase III, beta subunit [Clostridium thermocellum ATCC
           27405]
          Length = 366

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 196/389 (50%), Gaps = 29/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MKI   +  ++E +    + +  K T+ +   +LL+A D     K +G ++E  I   I 
Sbjct: 1   MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDNF---KMTGNDLELGIECLID 57

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   GSI +++ +  DIVR+L D   +   KEN     V I   +S+F L+  P   F
Sbjct: 58  ADILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSF 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS    E     +++   +++++ +T FA++TE  R  L G        ++    V+ DG
Sbjct: 115 PSLPSIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITF--VSIDG 172

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            R+A+ + +   +     S++VP K + EI +IL   D  + +  S+++I   I +  + 
Sbjct: 173 FRMALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVV 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
            RL++GE+ NY+++IP   +  +R+   +L  +++R S+++S  +   VK ++  DK+ +
Sbjct: 232 SRLLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIII 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSS 356
           T  N ++G   E + V  N   M++ FN +Y +E +       V+DDE+V    +SS   
Sbjct: 292 T-SNTEIGAVREEIRVEVNGSNMEVGFNPRYFIEAL------RVIDDELVDIYFNSSVGP 344

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             IR  + DS           Y+++P+RI
Sbjct: 345 CTIRPLEGDS---------FAYMILPVRI 364


>gi|23097457|ref|NP_690923.1| DNA polymerase III subunit beta [Oceanobacillus iheyensis HTE831]
 gi|22775680|dbj|BAC11958.1| DNA-directed DNA polymerase III beta chain [Oceanobacillus
           iheyensis HTE831]
          Length = 378

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 178/352 (50%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R  ++  + +  + I  +  IP+   + ++  +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQRDKLINGVSNVMKAISARTVIPILTGMKIEVKNHGVTLTGSDSDISIEYYIPIE 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            D          G+I + A    DIVRKL + + +    +++L   V I+ G + F L  
Sbjct: 61  EDGIVHVENIEEGTIILQAKYFPDIVRKLPE-STVDIVVDDQLN--VRITSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + +   SFEL   +LK+++++T FA++T E R  L G+   + +  L   
Sbjct: 118 QSAEEYPQLPKVQTENSFELPIDLLKSMIKQTVFAVSTMETRPILTGVNLKLVDNSLSFT 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           A  TD HRLA  E+ +     ++  I+VP K++ E+ +IL   + +V++S++ ++I    
Sbjct: 178 A--TDSHRLARREIPVSNAPIEISQIVVPGKSLNELNKILGDSEETVEISVTNNQILFRT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
           + L+   RL+DG +P    +IP  +  ++++    L   +DR S+++   R   VK +  
Sbjct: 236 KHLNFLSRLLDGNYPETSRLIPEQSKTKIQLKTKELLGTIDRASLLAKEERNNVVKFNAP 295

Query: 292 SDKLC-MTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
            + +  ++ ++P++G  +E +     E   + I F+ KY+++ +  I  DEV
Sbjct: 296 GNSMIEISSNSPEVGNVVEEITADQMEGEDVKISFSSKYMIDALKAIEYDEV 347


>gi|160944265|ref|ZP_02091494.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444447|gb|EDP21451.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii
           M21/2]
          Length = 368

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 177/346 (51%), Gaps = 16/346 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I  +++ +   +    + +  +++IPV   +LL+A    L +     E+ I   I A+
Sbjct: 1   MNIVCDKTLLSAAIDGVSKAVTMRSSIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I ++A LL  ++ ++  G QIS    +   T   I  G + F +QS P ++FP 
Sbjct: 61  IKEPGEIVLNAKLLSSMISRMPAG-QISIVAADNGKT--TIQSGVAQFEIQSMPATDFPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + + VL+++++RT +A++ +E +    G  F I  +  KL  VA DG+R
Sbjct: 118 LPNTGAEQTLTIKTGVLRDMIDRTLYAVSQDEKKPAHTGELFEIELD--KLTIVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           LA+ E  I A   K   IIVP K + E+  +L++ D   V +S +   +       ++  
Sbjct: 176 LAIVERPITA--VKDIRIIVPSKTMTEVSHLLANDDEEDVHISANRRYVVFTTAGYTIMS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKL--- 295
           RLI+GEF NY+NVIP  +   + ++  +    ++R S++ + R++  +++S +  K+   
Sbjct: 234 RLIEGEFLNYRNVIPAGSRTRVTIDTKDFISTIERASLIITERLKNPLRISFTEGKVVVR 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           C T    ++G+ ++  +       ++I FN +YLL+ + N  +++V
Sbjct: 294 CQT----NLGRVVDEFSAACEGDEVEIGFNNRYLLDALRNARTEQV 335


>gi|327438161|dbj|BAK14526.1| DNA polymerase sliding clamp subunit [Solibacillus silvestris
           StLB046]
          Length = 378

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/359 (26%), Positives = 175/359 (48%), Gaps = 28/359 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +L  L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFNILRDRLLAGLNDVMKAVSSKTTIPILTGIKIDVTNEGMTLTGSDADITIQTFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106
                   +   GSI + A +  +I+RKL           NE+  E+       I  G S
Sbjct: 61  ENGEQIMDITQTGSIVLQARMYNEIIRKL---------PTNEVEIEITNGYATIIRSGKS 111

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
            F+L     +E+P   E      F + + +LK+++  T FA+AT E R  L G+ + + E
Sbjct: 112 EFHLIGLDATEYPQLPEIAADRQFTIPTDLLKSVIRETVFAVATSESRPVLTGVNWKV-E 170

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
            D  +C VATD HRLA  +V++      + S+++P K++ E+ +IL   ++ V++ L+  
Sbjct: 171 GDALIC-VATDSHRLARRKVNLENLPNDITSVVIPGKSLNELNKILEDTNNPVQIVLTNQ 229

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQA 285
            +    + +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   
Sbjct: 230 HVLFKTDDVLFFSRLLEGNYPDTSRLIPEEFKTMITINGKSLLQAIDRASLLAREDRNNV 289

Query: 286 VKL-SLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
           V+  +L +  + ++ ++P++GK  E + V   E   + I F+ KY++E +  I   +VV
Sbjct: 290 VRFETLENQTVEISSNSPEIGKVEEQIQVESLEGENLKISFSAKYMMEALKAIDGQDVV 348


>gi|328949542|ref|YP_004366877.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM
           14884]
 gi|328449866|gb|AEB10767.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM
           14884]
          Length = 361

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 96/365 (26%), Positives = 172/365 (47%), Gaps = 27/365 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  + E +G   RII  +++ PV   + LQ +   L ++ +  E+++   + A 
Sbjct: 1   MRVRIPKRTLAEAIGILERIIPNRSSNPVITQLFLQGHSSGLTLRGTNGEVDLELTVTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115
            +   +  V AHL   IVR L  G  +    +N+   E+ +  G     L     + +PE
Sbjct: 61  TEGADAFLVPAHLFGQIVRGL-PGELVELSADNQ---ELEVESGSFRTRLATATPEGYPE 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
             F +  E        LA+  L   +    +A +TEE R    G+    +   L+  AVA
Sbjct: 117 LTFDAPMEAR------LAAPELARALAHVRYAASTEEYRAIFRGVQLEFHPGALR--AVA 168

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           +DG RLA    D+  +   +  ++VP ++  EI+R+L   +  V V ++E ++ L  E+ 
Sbjct: 169 SDGFRLA--RYDLATRTEFVKKLVVPARSADEIIRVLKDTEGEVAVGVTEGKLVLASEAF 226

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            MSV L++GEFP+Y+ VIP     E  ++   LR+++ RV +++      + L    D L
Sbjct: 227 RMSVALMEGEFPDYERVIPQQFVGEAVLSAEALRESIKRVKVLADKNNHRIDLFFQGDAL 286

Query: 296 CMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            +  +  D G+  E ++V     P + + +N +YL    D +S    V+ +V  RL    
Sbjct: 287 EVVAEG-DYGRGSERLSVQREGEPQLVLAYNAEYL---GDALSP---VEGQVRIRLSGPT 339

Query: 355 SSVFI 359
           S   I
Sbjct: 340 SPTVI 344


>gi|220930852|ref|YP_002507760.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168]
 gi|219992162|gb|ACL68765.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168]
          Length = 367

 Score =  125 bits (314), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/385 (24%), Positives = 191/385 (49%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           M+ T+ + D    +    R +  KNT+P+   + L+A  D  L +KA+  E+ I   + A
Sbjct: 1   MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVKA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G I + A  L  I+R+L D   I+F K +    E  ++   S F ++ F   EFP
Sbjct: 61  DIITEGKIVLPASHLSGIIRELPDD-NINF-KADLDKYEAELTCLSSRFKIKGFDADEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E    +   L    L  L++   F+ +T++ +  L G    I+   +++  VAT+ +
Sbjct: 119 QLPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVIDSGKIRM--VATNTY 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+++ +D+         +I+P   + E+  +L   D  V++ + ++ +  N   + +  
Sbjct: 177 RLSLSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R+I+G+FPNYQ V+P   + ++RV+  NL ++V RVS+++ +    + +S+  +K+ +T 
Sbjct: 236 RVIEGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + + G A E + +       +I  +  YLL+++  ++     DD V+  L    + + +
Sbjct: 296 QDSEEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLN-----DDVVILELIGPLNPLTL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           +         K+N  +  Y++MP+R
Sbjct: 351 K---------KENSDDFIYLVMPVR 366


>gi|168335259|ref|ZP_02693360.1| DNA polymerase III subunit beta [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 390

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 95/337 (28%), Positives = 176/337 (52%), Gaps = 17/337 (5%)

Query: 13  LLGHACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           +L  A  I+ +    ++T P+   +L+ A +  L +  +  E+ I   I   +   G I 
Sbjct: 31  ILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMGIEKTIEGEILENGKIA 90

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           + A L  +I++K+  G  I     NE  T++ I+ G S F LQ+   S FP+  +     
Sbjct: 91  IDAKLFSEIIKKMPQG-DIKMATINE--TQITITSGKSRFTLQTLDTSHFPTLPDVSLKQ 147

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
           S  ++   LKNL+++T F++A EE R  L G  F +  E+ +L  VA DG  +A   + +
Sbjct: 148 SLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEV--ENGQLSLVAIDGFXIAFRTISL 205

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
             +   +  +I P K + EI +ILS++++  V +   E+ I  N+   ++   L++GEF 
Sbjct: 206 NNKNLSIEKVI-PAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVSXLLEGEFL 264

Query: 248 NYQNVIPCSNDKELR--VNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTVDNPDM 304
            Y+++   SND E +  VN      +++R ++MS    +  ++ +++ D L +T  N D+
Sbjct: 265 RYKDIF--SNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIIT-SNTDI 321

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           G ++E +++     P+ I FN +YL++ + NI  DE+
Sbjct: 322 GNSLEEIDIILTGMPLKIAFNPRYLIDALKNIEDDEI 358


>gi|299541764|ref|ZP_07052087.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1]
 gi|298725502|gb|EFI66143.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1]
          Length = 378

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 99/358 (27%), Positives = 175/358 (48%), Gaps = 26/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +LE L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI V A +  +IVRKL  +  +I        G + +I  G S F+L 
Sbjct: 61  EDGQQIIHITETGSIVVQARMFNEIVRKLPTNDVEIQVTP----GFQTHIRSGKSEFHLI 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   E      F + + +LK ++  T FA+AT E R  L G+ + I  E L +
Sbjct: 117 GSDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNETL-I 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           C VATD HRLA  +V    Q+  +P    S+++P K++ E+ ++L    + V++ ++  +
Sbjct: 176 C-VATDSHRLARRKV----QLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQ 230

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
           +      +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V
Sbjct: 231 VLFKTGDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVV 290

Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
           +   L +  + ++ ++P++GK  E + V   E   + I F+ KY++E +  I   +VV
Sbjct: 291 RFEILDNQAVEVSSNSPEIGKVQEEIPVEALEGEGLKISFSAKYMMEALKAIDGQDVV 348


>gi|228994209|ref|ZP_04154109.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442]
 gi|228995398|ref|ZP_04155070.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17]
 gi|229003012|ref|ZP_04160871.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4]
 gi|228758240|gb|EEM07426.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4]
 gi|228764351|gb|EEM13226.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17]
 gi|228765661|gb|EEM14315.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442]
          Length = 381

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 90/356 (25%), Positives = 179/356 (50%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVVTEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGHTISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ ++P++GK +E +     E   + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDSTEI 350


>gi|226309589|ref|YP_002769483.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599]
 gi|226092537|dbj|BAH40979.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599]
          Length = 379

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 181/354 (51%), Gaps = 19/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M ITV+R  +   + H  + +  + TIP+   + ++ +D  L + AS  ++ I   IP  
Sbjct: 1   MHITVQREKLSNAVSHVSKAVSSRTTIPILTGIKIKTDDEGLTLTASDSDVSIEVQIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +V   GSI ++A +  +IVRKL    +I    ++ L T+  I  G + F +  
Sbjct: 61  EAGEWGVTVHQPGSIVLTARIFSEIVRKLPSN-EIDIQVDDRLATK--IRSGQAEFTING 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P     E    F +   +LK ++ +T F ++T E+R  L G+ + +++  L+  
Sbjct: 118 MDANEYPQLPHLEEDKVFSVPCDLLKAMIRQTVFGVSTSEMRPILTGLMWSLDQGKLRF- 176

Query: 173 AVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
            VATD HRLA   A V+    ++   +++VP K+  E+++IL    +   + +++++I +
Sbjct: 177 -VATDSHRLASRTAMVECPEDLS-FHNVVVPGKSCNELVKILDDDQNLADIVVADNQILV 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL- 288
             + +    RL++G +P+   +IP  +  E+ V+     Q+++R S++S   +   VKL 
Sbjct: 235 KSKHILFYSRLLEGTYPDTTRIIPQGSKTEITVSTKEFLQSIERASLLSREGKSNVVKLV 294

Query: 289 SLSSDKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++    + +T + P++GK  +  M    N   + I FN KY+++ +  I S E+
Sbjct: 295 TMPDGTVEITSNAPEIGKVTDILMPKAMNGEELKISFNAKYMIDALRAIDSAEI 348


>gi|313621670|gb|EFR92456.1| DNA polymerase III, beta subunit [Listeria innocua FSL S4-378]
          Length = 311

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 83/283 (29%), Positives = 156/283 (55%), Gaps = 14/283 (4%)

Query: 65  GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G I + +    DIVR+L ++  +I    E     + NIS G ++F L      E+P   E
Sbjct: 3   GGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLNGLDPMEYPKLPE 58

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
                + ++  +VLKN++ +T FA++  E+R  L G+ + I  +D KL AVATD HRLA+
Sbjct: 59  VTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWII--KDNKLSAVATDSHRLAL 116

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   ++ L    RL++
Sbjct: 117 REIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLE 176

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDN 301
           G +P+   +IP     EL +N     QA+DR S+++   R   +KL +L + ++ ++ ++
Sbjct: 177 GSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNS 236

Query: 302 PDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 237 PEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 277


>gi|124024713|ref|YP_001013829.1| DNA polymerase III subunit beta [Prochlorococcus marinus str.
           NATL1A]
 gi|123959781|gb|ABM74564.1| DNA polymerase III, beta chain [Prochlorococcus marinus str.
           NATL1A]
          Length = 386

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 104/405 (25%), Positives = 204/405 (50%), Gaps = 41/405 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A++  G L +      + I  +I 
Sbjct: 1   MKLNCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS++  G+IT+ A L  +IV KL + + +     +E   +V ++     + ++     +F
Sbjct: 61  ASIESSGAITLPAKLFGEIVSKLSNDSPL-VLTSDETSQQVELTSKSGTYQVRGMVSDDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   SF+L   +L N ++ T FA +T+E +  L G+  ++  +   + + ATDG
Sbjct: 120 PDLPLVESGNSFKLNPLLLSNAIKSTLFASSTDEAKQLLTGV--NLTFDGYGIESAATDG 177

Query: 179 HRLAV----------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR- 227
           HRLAV           E+D   +  K  SI +P K++ E+ + LS+ D S  ++    + 
Sbjct: 178 HRLAVLNLNNILSDSKEIDSSTKFEKF-SITLPSKSLREVEKFLSTCDISQPINFFVDKG 236

Query: 228 --IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             + +++E + +++R ++G +PNY  ++P + + EL  +      +++R+++++      
Sbjct: 237 QVVFISVEDI-ITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNV 295

Query: 286 VKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +K++   S++ + ++ D  D+G   ES+ V Y      I FN +YLL+ +      +V+D
Sbjct: 296 IKVTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGL------KVID 349

Query: 344 DEVVFRL---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++ +L     +  +VF       S  N D  VN  Y++MP++I
Sbjct: 350 SNLI-KLSCNSPTTPAVF-------SPINSD--VNFTYLVMPIQI 384


>gi|320120270|gb|EFE27943.2| DNA polymerase III, beta subunit [Filifactor alocis ATCC 35896]
          Length = 363

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 196/395 (49%), Gaps = 43/395 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV + +  + L  A + I  K  + +     L+A +  L I  +  EI I  +I A+
Sbjct: 2   MKFTVNQREFSDALAIASKAIISKTPLDILKGFYLEAYENELTITGNNLEIGIRTSIDAA 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN---------FYLQ 111
           V+  G   + A +L DI+RKL +              EV +S  D N         F ++
Sbjct: 62  VETEGKSVIDAKILSDIIRKLPN-------------EEVTVSIKDGNVLLQCQKLKFTIK 108

Query: 112 SFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
              ++ FP+  E EE VY   +  ++L+ ++++THFA+ T+E +    G    +  ED +
Sbjct: 109 EMLDNGFPTVDELEEAVYQ-NIHPAILEEMIKKTHFAVTTDETKPVFMGELVEL--EDNQ 165

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           +  +A DG RLA  + ++ + +    S+I+P K + EI+R+  + +  VK+ + +     
Sbjct: 166 MNVIALDGFRLAYKKCELKSSVGSR-SMIIPGKTMVEIMRLCQTMEEDVKIGIEDRHASF 224

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                 ++ +LI GEF  Y+ +IP     +++VN      A+DR +++S   +  VKL +
Sbjct: 225 LFGRTLVNTQLIQGEFSKYEEIIPKEFSTKIKVNRQKFIDALDRATLVSKNYL--VKLRI 282

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            +D+L +T  + ++G   E ++V      ++I FN ++ L+      S +V++DE ++  
Sbjct: 283 QNDELLITAHDNEVGNLEEILDVELEGKNLEIAFNIRFFLD------SLKVMEDEYIYMN 336

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++N S  I   + ++        +  Y+++P+RI
Sbjct: 337 FNTNVSPCIIKPEFET--------DYTYLVLPVRI 363


>gi|124021715|ref|YP_001016022.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9303]
 gi|123962001|gb|ABM76757.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9303]
          Length = 388

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 198/402 (49%), Gaps = 33/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  A+ 
Sbjct: 1   MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+    +E G +V +     ++ ++     +F
Sbjct: 61  ASVESSGAITLPARLLGEIVSRLSSDSPITL-ATDEAGEQVELKSLSGSYQMRGMSADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + ++ +  L   +  T FA +++E +  L G+  H + + ++  A ATDG
Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKAME--AAATDG 177

Query: 179 HRLAVAEV----DIVAQIAKMP-------SIIVPRKAVGEILRILSSKDSSVKVSL--SE 225
           HRLAV  +    D+   ++          ++ +P +++ E+ R+++   S  +VSL   +
Sbjct: 178 HRLAVLSLADALDVETTLSSDTDDEGENFAVTLPSRSLREVERLIAGWRSDDQVSLFCDK 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++        ++ R +DG +PNY+ +IP    +   V+      A++R+++++      
Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFISALERIAVLADQHNNV 297

Query: 286 VKLS--LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           VK+S   +S+ L ++ D  D+G   ES++  +    + I FN +Y+L+ +  + S     
Sbjct: 298 VKVSGDSTSELLQISADAQDVGSGSESLSAEFTGDSVQIAFNVRYVLDGLKVMDS----- 352

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D +V R ++  +   I  KD D        +   Y++MP++I
Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386


>gi|73661311|ref|YP_300092.1| DNA polymerase III subunit beta [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72493826|dbj|BAE17147.1| DNA polymerase III beta subunit [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 376

 Score =  125 bits (313), Expect = 1e-26,   Method: Compositional matrix adjust.
 Identities = 94/376 (25%), Positives = 187/376 (49%), Gaps = 21/376 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R   +  L    + I  + T+P+   + ++  +  + +  S  EI I   IP  
Sbjct: 1   MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIEVKNNEVILTGSDSEISIEITIPKQ 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T   I+ G S F L  
Sbjct: 61  VDGEDIIDIVETGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTL--ITSGHSEFNLSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +L +C
Sbjct: 118 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENEL-IC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV +V  +   ++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 T-ATDSHRLAVRKV-ALEDDSENKNVIIPGKALSELNKIMSDSEEDIDIFFASNQVLFKV 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 294

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +     +   + I FN KY+++ +  I +DEV   EV F  
Sbjct: 295 NELVELSSTSPEIGTVKEDVKASNVDGGNLKISFNSKYMMDALKAIDNDEV---EVEFF- 350

Query: 351 DSSNSSVFIRGKDKDS 366
             +     ++ KD DS
Sbjct: 351 -GTMKPFILKPKDDDS 365


>gi|239825586|ref|YP_002948210.1| DNA polymerase III subunit beta [Geobacillus sp. WCH70]
 gi|239805879|gb|ACS22944.1| DNA polymerase III, beta subunit [Geobacillus sp. WCH70]
          Length = 378

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 92/358 (25%), Positives = 175/358 (48%), Gaps = 28/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI ++R  +++ +    + +  + TIP+   + + A    + +  S  +I I   IP  
Sbjct: 1   MKIKIDREALVQSVQDVMKAVSPRTTIPILTGIKIAATSQGVTLTGSDSDISIESFIPTE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106
                 V+V   GSI + A    +IV+KL          EN +  EV       I  G +
Sbjct: 61  EEDKVLVEVVETGSIVLQARFFSEIVKKL---------PENTIEIEVQPNFLTVIRSGKA 111

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
            F L      E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  
Sbjct: 112 EFSLNGLDAEEYPRLPQIEEENVFKIPTDLLKTIIRQTVFAVSTSETRPILTGVNWRV-- 169

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
           ED +L   ATD HRLA+ +  I  +  +  ++++P K++ E+ +IL   +  V + ++ +
Sbjct: 170 EDGELICTATDSHRLALRKAKIETENQQSYNVVIPGKSLNELSKILDDSNDPVDIVITAN 229

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQA 285
           +I    + L    RL+DG +P    +IP  +  ++ VN     QA+DR S+++   R   
Sbjct: 230 QILFKTKHLLFFSRLLDGNYPETTRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNV 289

Query: 286 VKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           VKL+  +D +  ++  +P++GK  E +     E   + I F+ KY+++ +  +   ++
Sbjct: 290 VKLTTLNDGIIEISSISPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTDI 347


>gi|288800440|ref|ZP_06405898.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332653|gb|EFC71133.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 374

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 169/347 (48%), Gaps = 12/347 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +  + +   L    ++I  KNT+P+    L + ND +L I  S  E  +   +P  
Sbjct: 1   MKFKLSSTSLNNSLQTLAKVIASKNTLPILESFLFEVNDNVLTITGSDNENVMRTTLPLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ---SFPES 116
             D  G I + +    D+V++L +         N    EV   +G  NF  Q   ++P+ 
Sbjct: 61  ESDGDGVIAIPSRTTLDVVKELPEQPLAFDIDTNNFNVEVTYQNGKYNFTAQDGTAYPKP 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E  S    E      + +++L   + R+ FA+ ++++R  +NG++F +    L +  VA+
Sbjct: 121 EGVS----EGTSVITIPANILNANITRSMFAVGSDDMRPVMNGLYFDLQTTGLSI--VAS 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGH+L    +  +   A   + I+P+K    +  +L   +S V +    +   +N  S +
Sbjct: 175 DGHKLVRNVISTITG-ATPAAFILPKKPATLLKNVLPKDNSDVVIKFGTNCAEINFASGT 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ RLI+G +PNY +VIP SN  ++ ++  +L  A+ RV   +S   Q ++  L + KL 
Sbjct: 234 LTCRLIEGRYPNYSSVIPESNPNQVTIDRLSLLGALRRVLPFASESTQLIRFKLEAGKLE 293

Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ ++ D    A E++N  Y    M I F    + +I++++ SDEV 
Sbjct: 294 ISSEDIDFSTSAKEAVNCDYTGNNMSIGFKGGSMTDILNSLESDEVT 340


>gi|72383165|ref|YP_292520.1| DNA polymerase III subunit beta [Prochlorococcus marinus str.
           NATL2A]
 gi|72003015|gb|AAZ58817.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 386

 Score =  125 bits (313), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 100/403 (24%), Positives = 201/403 (49%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK++  +S++   L    R +  + T PV  +VLL A++  G L +      + I  +I 
Sbjct: 1   MKLSCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS+D  G+IT+ A L  +IV KL + + +     +E   +V ++     + ++     +F
Sbjct: 61  ASIDSSGAITLPAKLFGEIVSKLSNDSPL-VLTSDETSQQVELTSKSGTYQVRGMLSDDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   SF+L   +L N ++ T FA +T++ +  L G+  ++  +   + + ATDG
Sbjct: 120 PELPLVENGTSFKLNPLLLSNAIKSTLFASSTDDAKQLLTGV--NLTFDGYGIESAATDG 177

Query: 179 HRLAV----------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR- 227
           HRLAV           E+D   +  K  SI +P K++ E+ + LS+ D S  ++    + 
Sbjct: 178 HRLAVLNLNNILSDSKEIDSSIKFEKF-SITLPSKSLREVEKFLSTCDISHPINFFIDKG 236

Query: 228 --IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             + +++E + +++R ++G +PNY  ++P + + EL  +      +++R+++++      
Sbjct: 237 QVVFISVEDI-ITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNV 295

Query: 286 VKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +K++   S++ + ++ D  D+G   ES+ V Y      I FN +YLL+ +      +V+D
Sbjct: 296 IKVTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGL------KVID 349

Query: 344 DEVV-FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++    +S  +       + D        VN  Y++MP++I
Sbjct: 350 SNLIKLSCNSPTTPAIFSPINSD--------VNFTYLVMPIQI 384


>gi|23193192|gb|AAN14421.1|AF319579_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 381

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 184/358 (51%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIEQTGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ + P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|229065150|ref|ZP_04200443.1| DNA polymerase III subunit beta [Bacillus cereus AH603]
 gi|228716179|gb|EEL67898.1| DNA polymerase III subunit beta [Bacillus cereus AH603]
          Length = 381

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 184/358 (51%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIEQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ + P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|323463202|gb|ADX75355.1| DNA polymerase III, beta subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 377

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 61

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T +  +H  S F L  
Sbjct: 62  VDGQEIINVVEPGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTLITSAH--SEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L   VLKN++ +T+FA++T E R  L G+ + I + +L LC
Sbjct: 119 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNEL-LC 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +I    ++I+P KA+ E+ +I++  +  + +  + +++   +
Sbjct: 178 T-ATDSHRLAVRKLKLEEEIEDK-NVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N ++   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
             ++ ++  +P++G   E +     E   + I FN KY+++ +  I ++EV
Sbjct: 296 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNEEV 346


>gi|154496127|ref|ZP_02034823.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC
           29799]
 gi|150274682|gb|EDN01746.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC
           29799]
          Length = 370

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 106/389 (27%), Positives = 184/389 (47%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK T E++ +   +  + R +  K++IP    +LL+A     E++ +G  +E  I   +P
Sbjct: 1   MKFTCEKALLQSAISTSSRAVSPKSSIPALEGILLEAGS---ELRLTGYNLETGIRTVVP 57

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   GS+ +SA L  +I+RKL D   I F  EN +   VNI  G S F +      EF
Sbjct: 58  ADIQAKGSLVLSARLFGEIIRKLPDDTVI-FTAENYM---VNIKCGMSEFNILGTDPEEF 113

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     EY  SF +    LK ++ +T FA++  E R    G  F ++E  L +  V+ DG
Sbjct: 114 PELPTVEYQNSFVITQERLKAMIGQTLFAVSDNESRPIHTGSLFEVDENGLTV--VSVDG 171

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +RLA+    I  +  +   S +VP  A+ E+ +I S  D    V+     +   +    +
Sbjct: 172 YRLALRHEPIDKKEGEASFSFVVPGAALSEVEKICSQVDEPASVTQGARHVMFKVGDTML 231

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             R ++GEF  Y+  +P +N   +  +   L  ++DRVS++ S ++++    +  + L  
Sbjct: 232 VARRLEGEFLAYRQAVPRNNPIHIEGDTRALLSSIDRVSLIISDKLKSPLRCIFEENLLK 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD-SSNSS 356
                 +G A +   V  +   ++I FN KYL++ +    +D V       RL+ S+  S
Sbjct: 292 ISTKTAIGDARDECPVSGDGKGLEIGFNNKYLMDALKAAPADRV-------RLELSTGVS 344

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   D       D   N  Y+++P+R+
Sbjct: 345 PCVILPD-------DGGDNFLYMVLPVRL 366


>gi|302345412|ref|YP_003813765.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC
           25845]
 gi|302150115|gb|ADK96377.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC
           25845]
          Length = 374

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 96/370 (25%), Positives = 183/370 (49%), Gaps = 23/370 (6%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75
           R+I  KN++P+    L + +DG L I AS  E  + G +  +++ C   G+  V+ H + 
Sbjct: 19  RVINSKNSLPILDCFLFEVHDGQLIITASDSENVMRGTL--NLESCEGEGNFAVNNHTIL 76

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134
           D V++L +         +E+   V   +G  NF +      E+P  +   +   +  L +
Sbjct: 77  DAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPI--LGADEYPKAQSVSDNATTITLQA 134

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
             L + + R+ FA A +E+R  +NG++F + E+ L +  VA+DGH+L   ++  +   + 
Sbjct: 135 EKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDGLAI--VASDGHKLVRNKIFSIKSDSP 192

Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             S ++P+K    +  +LS     V +   E    ++    +++ RLI+G++PNY +VIP
Sbjct: 193 A-SFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLACRLIEGKYPNYNSVIP 251

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313
             N  ++ ++  +L  A+ RV   +S   Q ++  +S   L +  ++ D    A ES+  
Sbjct: 252 QDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSVGLLELNAEDIDFATSAKESVTC 311

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
            Y   PM I F    +L+I++N+ SD+V    V+   D S + V + G   +++      
Sbjct: 312 EYGGNPMSIGFKGSSMLDILNNLESDDV----VIQLADPSRAGVIVPGTQPENE------ 361

Query: 374 VNAFYVLMPM 383
            +   ++MPM
Sbjct: 362 -DILMLIMPM 370


>gi|319893739|ref|YP_004150614.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163435|gb|ADV06978.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 376

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 1   MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL  G ++      +  T +  +H  S F L  
Sbjct: 61  VDGQEIINLVEPGSVVLPGRFFVDIIKKLP-GKEVKLSTNEQFQTLITSAH--SEFNLSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L   VLKN++ +T+FA++T E R  L G+ + I + +L LC
Sbjct: 118 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNEL-LC 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +I    ++I+P KA+ E+ +I++  +  + +  + +++   +
Sbjct: 177 T-ATDSHRLAVRKLKLEEEIEDK-NVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N ++   A+DR S+++       +KLS  
Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 294

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
             ++ ++  +P++G   E +     E   + I FN KY+++ +  I ++EV
Sbjct: 295 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAIDNEEV 345


>gi|163938015|ref|YP_001642899.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4]
 gi|229136316|ref|ZP_04265063.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196]
 gi|163860212|gb|ABY41271.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis
           KBAB4]
 gi|228647188|gb|EEL03276.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196]
          Length = 381

 Score =  124 bits (312), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 184/358 (51%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIEQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ + P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|189501610|ref|YP_001957327.1| DNA polymerase III subunit beta [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497051|gb|ACE05598.1| DNA polymerase III, beta subunit [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 372

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 95/367 (25%), Positives = 180/367 (49%), Gaps = 12/367 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++  S + + L      +     IP+  + L +  +G L+I AS  +  I   +   
Sbjct: 1   MKFSISSSTLYKHLVALYGAVVSNPLIPILENFLFEITNGKLKITASDLQTSIITELELD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    S+ V A +L D ++ L +   ISF+ +  + + ++I      + L     ++FP 
Sbjct: 61  VKGETSVAVPARILLDTLKNLPEQP-ISFYIDESVYS-ISIKSDTGQYNLAGENATDFPQ 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S +L + +LK  +++T  A + +E++  +NG++ +  E+      VATD HR
Sbjct: 119 IPEVAAKTSIQLPADILKRAIQQTIIATSHDELKPAINGMYMNFKEDAFTF--VATDIHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     + +    + P  I+PRK +  +  +L +    V++S   + +H  I ++ M  R
Sbjct: 177 LIRYTRNNITAAEQAP-FILPRKTLMLLNGLLPTDKQEVEISFGSNNVHFKIANVRMVSR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+NVIP +N  +LR+N   L  ++ R+ I ++     VK +L    L +  +
Sbjct: 236 LIDERYPDYENVIPKNNPHKLRINRMALLTSLKRIIIYTNKITHQVKFTLGEQNLEILAE 295

Query: 301 NPDM-GKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +   KA E ++  Y  +  ++I FN K L+E+++N+ +     DEV F     N +  
Sbjct: 296 DFNFDNKAKEQLSCEYVGDASLEIGFNAKSLIEMLNNLQA-----DEVNFHFSQPNKAAV 350

Query: 359 IRGKDKD 365
           I   D++
Sbjct: 351 IIPNDQE 357


>gi|261368843|ref|ZP_05981726.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM
           15176]
 gi|282569113|gb|EFB74648.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM
           15176]
          Length = 369

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 91/334 (27%), Positives = 168/334 (50%), Gaps = 12/334 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   E+S +   +    R I  ++ IPV   + L+A    L +     E+ IT  I  +
Sbjct: 1   MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIECN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V V G   + A LL  +V ++  G  +I    E +      IS G + F + +   S++P
Sbjct: 61  VLVPGETVLEAKLLLSMVSRMPAGDVRIELTDEGQ----AIISGGVAEFEIPALNASDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S        +  + +S+++ L+E+T +A++ ++ +    G  F I  E   L  VA DG+
Sbjct: 117 SLPVTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVI--EPGSLTIVALDGY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + D+  +  +   II+P K + E+L+I+   D  VK+  +   +       ++  
Sbjct: 175 RLAIIQRDV--ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMS 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           RLI+G+F NY++VIP  N   + V+C      ++R S++ + R++  +++S + DK+ + 
Sbjct: 233 RLIEGDFLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVR 292

Query: 299 VDNPDMGKAIESM-NVYYNECPMDICFNYKYLLE 331
              P +GK ++    V     P++I FN +YLL+
Sbjct: 293 CQTP-LGKVVDEFPPVAMTGDPVEIGFNNRYLLD 325


>gi|210624035|ref|ZP_03294152.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275]
 gi|210153242|gb|EEA84248.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275]
          Length = 368

 Score =  124 bits (311), Expect = 2e-26,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 166/325 (51%), Gaps = 11/325 (3%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIV 78
           + I  + TI +   +LL   +G L++  S  EI I   + + ++  G I + A L  DIV
Sbjct: 19  KAINSRTTIELLKGILLSTENGALKLTGSDAEIRIETFVQSEIEEDGKIVLDAKLFGDIV 78

Query: 79  RKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137
           RKL D    SF + E +    V+I   +S F ++     E+P+  + E    + +   +L
Sbjct: 79  RKLPD----SFVQIETDANNNVHIYCENSRFTIKGHSAEEYPAFSDVEESEMYSIPQELL 134

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
           K+++++T FA++ ++ +  L G       E+ K   VA DG+RLAV    I     K   
Sbjct: 135 KDMIKQTSFAISQDQTKPVLMGELLE--AENGKASLVAIDGYRLAVRSCSI-DSFTKDIK 191

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           +I+P K + +I  +++  + S+ V  +E      +    +  RL++G+F +Y  ++P   
Sbjct: 192 VIIPGKTLVDINSLMTG-EGSINVGFTEKNAVFMLGDTKVVTRLLEGDFIDYSRLLPKEY 250

Query: 258 DKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
           +  +++    L  +++R S++S S R   +KLS+  D + +T  N D G   E +++   
Sbjct: 251 NSRIKLKSKALLNSIERASLLSQSERNNLIKLSIRDDAMVIT-SNTDRGNVYEEVSLELE 309

Query: 317 ECPMDICFNYKYLLEIIDNISSDEV 341
              +DI FN +YL+E + NI S+E+
Sbjct: 310 GEYLDIAFNSRYLMEGLKNIDSEEI 334


>gi|319936679|ref|ZP_08011092.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1]
 gi|319808236|gb|EFW04801.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1]
          Length = 367

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 182/344 (52%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R  +L  L    R +  K+ +PV   +     D  L +  S  +I I  +I  +
Sbjct: 1   MNFKIKRLALLNALAKVSRAVSMKSPLPVLTGIKFDLKDNELILTGSDSDITIQTSIKEN 60

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +++   GS+ +S+  + +I++K+ D   +  +  +  GT   I   +S F L      ++
Sbjct: 61  IEIIQTGSVVLSSRYILEIIKKI-DSEFVHIYIVD--GTLTRIEGANSKFDLNGTSYIDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +     ++ S+ LK  +E+T FA + +E R  L G+ F    +D  L  +ATD 
Sbjct: 118 PRIDLNKSGVHLQMKSTDLKQAIEQTSFATSEKETRPVLTGVNF--KAKDHVLECIATDS 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA   + I + ++   +II+P+K++ EI RI+  KD  + + +S+ ++    +S+ + 
Sbjct: 176 YRLAKRILTIDSDVS--FNIIIPKKSLIEISRIIE-KDEFIDLYVSDRKVLFIFDSVLIQ 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG +P+   +IP  ++  + V+  +L  ++DR S++S+ +   +KLS+S D + ++
Sbjct: 233 TRLIDGSYPDTSRLIPHEHNYSMSVDSVSLLNSIDRASLLSNEQTNIIKLSMSEDHVMLS 292

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
             + ++G   E+++  +Y    + I F+ KYL + I +I+ ++V
Sbjct: 293 SYSQEIGSVEENLSKAFYKGDELSISFSAKYLNDAIKSINGEKV 336


>gi|169825623|ref|YP_001695781.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41]
 gi|168990111|gb|ACA37651.1| DnaN [Lysinibacillus sphaericus C3-41]
          Length = 378

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 174/358 (48%), Gaps = 26/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +LE L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI V A +  +I+RKL  +  +I        G + +I  G S F+L 
Sbjct: 61  EDGQQIIHIAETGSIVVQARMFNEIIRKLPTNDVEIQVTP----GFQTHIRSGKSEFHLI 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   E      F + + +LK ++  T FA+AT E R  L G+ + I  E L +
Sbjct: 117 GSDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNETL-I 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           C VATD HRLA  +V    Q+  +P    S+++P K++ E+ ++L    + V++ ++  +
Sbjct: 176 C-VATDSHRLARRKV----QLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQ 230

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
           +      +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V
Sbjct: 231 VLFKTGDVLFFSRLLEGNYPDTSRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVV 290

Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
           +   L    + ++ ++P++GK  E + V   E   + I F+ KY++E +  I   +VV
Sbjct: 291 RFEILGHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQDVV 348


>gi|239618231|ref|YP_002941553.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239507062|gb|ACR80549.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 367

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 97/388 (25%), Positives = 185/388 (47%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEI-TGAIP 58
           M+ ++ R++ L  L      +  K   P+   +L + A D  LE+ A+  E  I T   P
Sbjct: 1   MRFSIPRNEFLTRLESVSTAVASKTVKPILSGILFRTAEDSKLELIATDLETSIKTYVQP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           + +   G   V A +L +I+R L DG     F++    T + I    S F L +    EF
Sbjct: 61  SEISGTGQFVVDAKVLLEIMRNLPDGKVFFEFQD----TNLVIRMEKSRFVLPTMSGEEF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +  +  +  E + + L+ +++R  F  A +E    LNG+++ +    L+L  VA DG
Sbjct: 117 PEVEPAQGGWELETSVTALEIMIDRVLFCAAKDEFMRNLNGVYWELEGGYLRL--VAADG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM 237
            RLA+AE      +      ++  K++ ++   + +  S  +K+    +R+    +   M
Sbjct: 175 FRLALAEEKTNQNLED--HFLLTLKSMKDLQSSIKTAGSDDMKIVYDGTRVGFYFDGTEM 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             R+++ +FP+Y+ V+P +    +  N ++L  A+ R SI + +   ++K+ +  D + +
Sbjct: 233 VARVVEADFPDYKKVLPKAFKTRVVANTSSLSDAIRRASIAARLGSDSIKIEIKEDNMKL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              +PD G++ E + +  +   + I FN K+LLE    I ++EV   E+ F    SNS +
Sbjct: 293 IAKSPDHGESSEELEIKKDGEDLIIAFNPKFLLEATKKIDTEEV---ELNFV--DSNSPL 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D +            Y++MP+R+
Sbjct: 348 QMNPVDVE---------GYLYIIMPIRL 366


>gi|227432905|ref|ZP_03914849.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351338|gb|EEJ41620.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 378

 Score =  124 bits (311), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 18/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ RS  ++ L    R I  + TIP+  ++ L  ND  L +  S  EI I   +P S
Sbjct: 1   MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNAEISIETTVPQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV++L + A       N  G    I+ G S+F +   
Sbjct: 61  DTSAQLIITTPGGITLPATFFINIVKRLPNDA----MTLNVEGLRATITSGASSFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +    +K  A
Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGNRVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           V TD HRL+   V +    A     ++I+P K+  E+  +L  +D  V++  S ++   +
Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           +   +   RL++G +P    +IP  +  ++ +  ++L  A+DR S++S   R   V+LSL
Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
            + +  +T  + ++G+  E +N    E   ++I FN  Y+
Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYV 333


>gi|189218019|ref|YP_001938661.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum
           V4]
 gi|189184877|gb|ACD82062.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum
           V4]
          Length = 371

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 112/394 (28%), Positives = 194/394 (49%), Gaps = 35/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLL--QANDGLLEIKA---SGPEIEITG 55
           MK +VE+   ++ L     II  ++T+P+  HVLL  +A D LL       +  +IE+T 
Sbjct: 1   MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELT- 59

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
              A+V+  G+ T+ A  L  IVR+L D  Q+S+ K N    +  +S   S F L   P+
Sbjct: 60  ---ANVEEEGTTTLPARRLLTIVREL-DSDQLSW-KTNS-NHQTTLSSDRSFFQLNGLPD 113

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P    E       ++   ++ ++    +AMA +E R  LNG +F I     ++    
Sbjct: 114 DDYPKFFPERREEGLSISQGKIRKMLRMVEYAMA-DESRPALNGAWFSIKSGRFEVAV-- 170

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDG RLA    ++  +  +   I VP KAV EI RI+   D ++K+ L  ++I L ++++
Sbjct: 171 TDGKRLAYTFEEVENESFEAEGI-VPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNI 229

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS---IMSSVRIQAVKLSLSS 292
               +L +G++PN++ VIP +  ++  ++  +   A+ RVS   I  S  +  V   L +
Sbjct: 230 LFFSKLTEGKYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGT 289

Query: 293 DKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++L ++   P++G+A E  S+  +  E    I FN  YL+E +  +  ++V+  E V   
Sbjct: 290 NELVLSCQAPEIGQARETISLKAFQGEA-FSIPFNPLYLIEPLREMEKEDVI-LEFVNPS 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              N  +   G             N  YVLMP++
Sbjct: 348 TKGNPCLITEG------------TNFVYVLMPIK 369


>gi|222099398|ref|YP_002533966.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221571788|gb|ACM22600.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 366

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 95/347 (27%), Positives = 187/347 (53%), Gaps = 18/347 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI     ++ + +  A + + +K+  PV    L +  +G   I A+  E   TG + AS
Sbjct: 1   MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLE---TG-VKAS 56

Query: 61  VDVCGSITVSAHLLY--DIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115
           V+ C  I+  A  +   D+++KL    ++   +  EL   G  + I+ G + F + + P 
Sbjct: 57  VN-CAEISGDARFVVPGDVLQKL---VKVLPDETTELSLEGDNLVITSGSTVFRITTMPA 112

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     E   SFE+ +S+L+ +VE+  FA AT+E    LNG+F+ +++  L+L  VA
Sbjct: 113 DEFPDIAPAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRL--VA 170

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIES 234
           +DG RLA+AE     +  +  + ++  K++ E+  +L+ + + +V V     R+ L    
Sbjct: 171 SDGFRLALAEE--QIENEEETNFLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTND 228

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +   +R++D EFP+Y+ VIP +   ++ V+  +L++++ RV +++S   ++VK  +  + 
Sbjct: 229 VETVMRVVDAEFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENT 288

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +   +PD G+ I+ + V      + I FN K++++ +  I ++E+
Sbjct: 289 MRLVSRSPDYGEVIDELEVQKEGEDLIIAFNPKFIVDALRRIETEEL 335


>gi|330995700|ref|ZP_08319598.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT
           11841]
 gi|329574759|gb|EGG56320.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT
           11841]
          Length = 374

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/348 (27%), Positives = 171/348 (49%), Gaps = 14/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V  S +   L    R+I  KNT+P+    L +  D +L I AS  E  +  ++   
Sbjct: 1   MKFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITSLELV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS---FPE 115
             D      ++A  + D ++++ +   +SF    + +    N  +G  N   QS   +PE
Sbjct: 61  ESDANTRFCINAKTIQDSMKEIAE-QPLSFDINPDNMEITANYQNGRFNIVGQSADEYPE 119

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              P    +E +    + +  + N + R  FA A +E+R  +NG++F I  ++L    V+
Sbjct: 120 MNLP----QEDMKGLVIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VS 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGH+L V   +   +  +  + I+P+K    +  +L  +   V +  +E   ++ +ES 
Sbjct: 174 TDGHKL-VRNRNYTIKGDQPAAFILPKKPATILKNLLPKESDDVTLRFNERNAYITMESS 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RLI+G +PNY +VIP +N   + V+   L  A+ RV I S+     +KL L S++L
Sbjct: 233 RIICRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQL 292

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++  + D    A E +   Y + PM+I F   +L++I++N+  + V+
Sbjct: 293 VVSGQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGGENVI 340


>gi|169627110|ref|YP_001700759.1| DNA polymerase III subunit beta [Mycobacterium abscessus ATCC
           19977]
 gi|169239077|emb|CAM60105.1| DNA polymerase III, beta subunit (DnaN) [Mycobacterium abscessus]
          Length = 399

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 105/402 (26%), Positives = 185/402 (46%), Gaps = 34/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R D  + +    R +  + T+PV   VLL A+D  L +     E+     +PA 
Sbjct: 13  LKFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGFDYEVSAQVKVPAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           V   G+  VS  LL DI R L +   +    E   GT + IS G + F L S P  ++  
Sbjct: 73  VAAAGNALVSGRLLSDITRSLPN-KPVDVALE---GTRLLISCGSAKFSLPSMPVEDYPA 128

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            PS  EE    +  L + V    + +   A   ++    L GI   IN + + L   ATD
Sbjct: 129 LPSLPEE----TGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEINGDTVVLA--ATD 182

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSL-------SESRIH 229
             RLAV E++  +   +   +++VP K + E  +  SS  S V+++L       SE  + 
Sbjct: 183 RFRLAVRELNWTSGSGETSAAVLVPAKTLSEAAKSASSG-SDVQLALGAGSAIGSEGLLG 241

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  +    + RL+D EFP ++ ++P  +     +  + L +A+ RV++++  R   ++L 
Sbjct: 242 IVSDGKRSTTRLLDAEFPKFRQLLPTEHTALATIAISELVEAIKRVALVAD-RGAQIRLE 300

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F 
Sbjct: 301 FEPGLLRLSAGADDVGRAEEELEVEFVGEPLTIAFNPTYLTDGLGSLHS-----NRVTFG 355

Query: 350 LDSSNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
             + +    +R  D D  + + +      + +  Y+LMP+R+
Sbjct: 356 FTTPSRPAVLRPADDDQSSPEGSGPFTAAQTDYVYLLMPVRL 397


>gi|229170194|ref|ZP_04297880.1| DNA polymerase III subunit beta [Bacillus cereus AH621]
 gi|228613295|gb|EEK70434.1| DNA polymerase III subunit beta [Bacillus cereus AH621]
          Length = 381

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 183/358 (51%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIKQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ + P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|229014657|ref|ZP_04171771.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048]
 gi|228746668|gb|EEL96557.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048]
          Length = 381

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 94/358 (26%), Positives = 183/358 (51%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIKQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVA-QIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+ +  I    IA     ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LS-LSSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS L    L ++ + P++GK +E +   NV   E  + I F+ KY+++ +  + S E+
Sbjct: 295 LSTLEQQMLEISSNAPEIGKVVEEVQCENVDGEE--LKISFSAKYMMDALKALDSTEI 350


>gi|327475233|gb|AEA77211.1| DNA polymerase III beta subunit [Bacillus sp. 15.4]
          Length = 361

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 169/336 (50%), Gaps = 18/336 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC--------GSITV 69
            + +  + TIP+   + + A D  + +  S  +I I   IP   D          G I +
Sbjct: 1   MKAVTSRTTIPILTGIKIIATDEGVTLTGSDSDISIESFIPTEEDGNEIVEVIEKGGIVL 60

Query: 70  SAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
            A    +IV+KL  D  +I    +N L T   I  G + F L      E+P   + E   
Sbjct: 61  QAKFFSEIVKKLPMDTVEIEV--QNHLQT--VIRSGKAEFNLNGLDPEEYPHLPQIEEGN 116

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
           +F++ + +LK +V +T FA++T E R  L G+ + +  E+ +L  +ATD HRLA+ +  +
Sbjct: 117 AFKVPTDLLKTMVRQTVFAVSTSETRPILTGVNWRV--ENGELSCIATDSHRLAMRKAPL 174

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
            +      +I++P K++ E+ +IL      V++ ++++++    + L    RL++G +P+
Sbjct: 175 ESDTGNEYNIVIPGKSLTELSKILDDNSEPVEIVITDNQVLFKAKHLLFFSRLLEGNYPD 234

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS-LSSDKLCMTVDNPDMGK 306
              +IP  +  EL +      QA+DR S+++   R   VKLS + S  + ++ + P++GK
Sbjct: 235 TSRLIPNESKTELVLATKEFLQAIDRASLLAREGRNNVVKLSTVESGVIEISSNTPEIGK 294

Query: 307 AIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            IE +    NE   + I F+ KY+++ +  +   E+
Sbjct: 295 VIEQVQSQSNEGEELKISFSAKYMMDALKALEGTEI 330


>gi|254432559|ref|ZP_05046262.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001]
 gi|197627012|gb|EDY39571.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001]
          Length = 466

 Score =  124 bits (310), Expect = 3e-26,   Method: Compositional matrix adjust.
 Identities = 103/403 (25%), Positives = 193/403 (47%), Gaps = 35/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++P
Sbjct: 79  MKLVCSQTELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 138

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A L  +IV +L     I+  +  + G +V++     N+ ++  P  +F
Sbjct: 139 ASVEASGAITLPARLFGEIVSRLSAEGPITI-QSPDGGEQVDLISLSGNYQMRGMPAEDF 197

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +      L +  L   +  T FA + +E +  L G+   ++   L+ CA ATDG
Sbjct: 198 PDLPLVQSGQPIRLDADALVKGLRATLFASSGDEAKQLLTGVHLRLDAGALE-CA-ATDG 255

Query: 179 HRLAV---AEVDIVAQIAKMP---------SIIVPRKAVGEILRILSSKDSSVKVSL--S 224
           HRLAV   A  +  A+ +            ++ VP +++ E+ R+LSS+ S   +SL   
Sbjct: 256 HRLAVLKLAHGEAPAETSDDAADQADGDPFAVTVPARSLRELERLLSSRQSEEPLSLFCE 315

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
             ++        ++ R +DG +PNY  +IP S  + +  +   L  A++RV++++     
Sbjct: 316 RGQVVFLWSDQVLTSRSLDGTYPNYPQLIPDSFVRSISSDRRALIAALERVAVLADQHNN 375

Query: 285 AVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            VKL+   +S  L +  D  D+G+  ES+        + I FN +YLL+ +  ++S    
Sbjct: 376 VVKLTADPASGTLQVQADAQDVGRGSESVPAVIEGESLQIAFNVRYLLDGLKAMAS---- 431

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++VV   ++  +   +R  D              Y++MP++I
Sbjct: 432 -EQVVLHCNAPTTPAVLRPGDASGFT---------YLVMPVQI 464


>gi|148269798|ref|YP_001244258.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1]
 gi|281412318|ref|YP_003346397.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10]
 gi|147735342|gb|ABQ46682.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1]
 gi|281373421|gb|ADA66983.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10]
          Length = 366

 Score =  124 bits (310), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 180/347 (51%), Gaps = 18/347 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITV   ++ + +  A + + +K+  P+    L +  DG   I  +  E  +   + A+
Sbjct: 1   MKITVTTLELRDKITIASKALAKKSVKPILAGFLFEVKDGNFYICTTDLETGVKATVNAA 60

Query: 61  VDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPE 115
            ++ G     V   ++  +V+ L D          EL  E +   IS G + F + + P 
Sbjct: 61  -EISGEARFVVPGDIIQKLVKVLPDEI-------TELSLEGDVLVISSGSTVFRITTMPA 112

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     E   +FE+  S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA
Sbjct: 113 DEFPEITPAESGITFEVDISLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VA 170

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIES 234
           +DG RLA+AE     +  +  S ++  K++ E+  +L ++ + ++ V     R+ L    
Sbjct: 171 SDGFRLALAEE--QIENEEETSFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLTTND 228

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +   +R++D EFP+Y+ VIP +   ++ V+  +L +++ RV +++S   ++VK  +  + 
Sbjct: 229 VETVMRVVDAEFPDYKRVIPETFKTKVVVSRKDLMESLKRVMVIASKGSESVKFEIEENV 288

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +   +PD G+ I+ + V      + I FN K++ +++ +I ++E+
Sbjct: 289 MRLVSKSPDYGEVIDEVEVQKEGEDLVIAFNPKFIEDVLKHIETEEI 335


>gi|327475231|gb|AEA77210.1| DNA polymerase III beta subunit [Bacillus aquimaris]
          Length = 378

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 94/353 (26%), Positives = 175/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  +++ +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MKFVIQREALVQSVQDVMKAVTSRTTIPILTGIKIIATEEGVTLTGSDSDISIESFIPKE 60

Query: 61  ------VDVC--GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                 V++   G I + A    +IV+KL +D  +I    +N   T   I  G + F L 
Sbjct: 61  EEGSEIVEIMDNGGIVLQAKFFSEIVKKLPKDTVEIEV--QNHFQT--VIRSGKAEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   + E     ++++ +LK ++ +T FA++T E R  L G+   I   D +L
Sbjct: 117 GLDPEEYPHLPQIEEGNGIKVSTDLLKTMIRQTVFAVSTSETRPILTGVNCQI--ADGEL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATD HRLA+ +  I        +I++P K++ E+ +IL   D  V++ ++E+++   
Sbjct: 175 SCIATDSHRLAMRKAPIETIHDASYNIVIPGKSLNELNKILDDTDEPVEIVITENQVLFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS- 289
            + L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   VKLS 
Sbjct: 235 AKHLLFFSRLLEGNYPDTSRLIPSDTKTELTLNTKEFLQAIDRASLLAREGRNNVVKLST 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEV 341
           L    + ++ + P++GK IE +     E   + I F+ KY+++ +  I   E+
Sbjct: 295 LEGGIIEISSNTPEIGKVIEEVQSESVEGEDLKISFSAKYMMDALKAIEGTEI 347


>gi|281356711|ref|ZP_06243202.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281316838|gb|EFB00861.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 364

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 95/384 (24%), Positives = 180/384 (46%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + + L     II  ++ +PV  +V++QA +G+L +  +  EI I+  + A 
Sbjct: 1   MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G  T  A  L  +V     G  + F  +++    + I  G S+F L   P ++FP+
Sbjct: 61  VEEAGVTTAPARKLASLVGCFV-GTDVVFEVDDK--DHIKIKCGTSHFTLLGLPAADFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E     ++  S  K ++    +A++ ++ R  L G+     E  + L  VATDG R
Sbjct: 118 AVEFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTL--VATDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E    A        I+P KA  E  R+L   D+ + + L + +         ++ +
Sbjct: 176 LAMQEKTPEAIEGGDGDAIIPLKAASEARRLLEG-DAVMTIRLGDKQCTFVAGGFELTTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G +PNY+ V+P S  + + V  +     ++ VS++ S     + L   +++L +   
Sbjct: 235 LIEGTYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQAS 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + ++G+  + + + +   P ++ FN  YL + + N  +     D++  +++   + V I 
Sbjct: 295 SAEVGEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADA-----DKIRMKINDPLNPVAIE 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
           G +              YV+MP+R
Sbjct: 350 GSE-----------GFLYVIMPIR 362


>gi|259502129|ref|ZP_05745031.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri
           DSM 16041]
 gi|259169942|gb|EEW54437.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri
           DSM 16041]
          Length = 380

 Score =  123 bits (309), Expect = 4e-26,   Method: Compositional matrix adjust.
 Identities = 98/343 (28%), Positives = 170/343 (49%), Gaps = 21/343 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M  T+ R+  +  L +  R I  K TIP+   + +  +   + +  S  +I I   I A 
Sbjct: 1   MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAN 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +V   G+I + A    +IV+KL D  Q++    N  G +  I+ G + F +   
Sbjct: 61  NEDYGLTVKEAGAIVLPARFFSEIVKKLPD-KQVTIEVTN--GFQAEITSGTAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             S FP   E E   +  LA+ VLK ++ +T  A++ +E R  L G+ F +  +D  L A
Sbjct: 118 DASNFPHLPEIESDNTITLATDVLKEVIRQTVIAVSKQESRPILAGVHFTL--KDGLLTA 175

Query: 174 VATDGHRLA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRLA   VA  ++   I+    II+P K++ E+  ++S     VKV +SE+++  
Sbjct: 176 VATDSHRLAQRKVALENVDNSISF--DIIIPGKSLDELSGMMSDDSEDVKVQVSENQVLF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
              +     RL++G +P    +IP ++D  + V       ++DR S++S   R   VKL+
Sbjct: 234 IFGNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLT 293

Query: 290 L--SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
           +  ++ ++ ++ D+PD+G   E +     E   ++I FN  Y+
Sbjct: 294 IQPANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYM 336


>gi|256003887|ref|ZP_05428874.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM
           2360]
 gi|281418688|ref|ZP_06249707.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20]
 gi|255992225|gb|EEU02320.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM
           2360]
 gi|281407772|gb|EFB38031.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20]
 gi|316939068|gb|ADU73102.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM
           1313]
          Length = 366

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 195/389 (50%), Gaps = 29/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MKI   +  ++E +    + +  K T+ +   +LL+A D     K +G ++E  I   I 
Sbjct: 1   MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDNF---KMTGNDLELGIECLID 57

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   GSI +++ +  DIVR+L D   +   KEN     V I   +S+F L+  P   F
Sbjct: 58  ADILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSF 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS    E     +++   +++++ +T FA++ E  R  L G        ++    V+ DG
Sbjct: 115 PSLPSIEKENMIKVSQKAIRDMIRQTLFAVSMEGTRPILTGSLIECAGNEITF--VSIDG 172

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            R+A+ + +   +     S++VP K + EI +IL   D  + +  S+++I   I +  + 
Sbjct: 173 FRMALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVV 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
            RL++GE+ NY+++IP   +  +R+   +L  +++R S+++S  +   VK ++  DK+ +
Sbjct: 232 SRLLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIII 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSS 356
           T  N ++G   E + V  N   M++ FN +Y +E +       V+DDE+V    +SS   
Sbjct: 292 T-SNTEIGAVREEIRVEVNGSNMEVGFNPRYFIEAL------RVIDDELVDIYFNSSVGP 344

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             IR  + DS           Y+++P+RI
Sbjct: 345 CTIRPLEGDS---------FAYMILPVRI 364


>gi|56418537|ref|YP_145855.1| DNA polymerase III subunit beta [Geobacillus kaustophilus HTA426]
 gi|56378379|dbj|BAD74287.1| DNA-directed DNA polymerase III beta subunit [Geobacillus
           kaustophilus HTA426]
          Length = 378

 Score =  123 bits (309), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 24/356 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I+++R  + + +    + +  + TIP+   + L A    + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNF 108
                 VDV   GSI + A    +IV+KL         +  E+ TE N    I  G S F
Sbjct: 61  KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQ-------QTVEIETEDNFLTIIRSGHSEF 113

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L      E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  E 
Sbjct: 114 RLNGLNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EH 171

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
            +L   ATD HRLA+ +V I ++     ++++P K++ E+ +IL   +  V + ++ +++
Sbjct: 172 GELVCTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQV 231

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VK
Sbjct: 232 LFKAEHLLFFSRLLDGNYPETARLIPTESKTTMIVNTKEFLQAIDRASLLAREGRNNVVK 291

Query: 288 L-SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           L +L    L ++  +P++GK  E +     E   ++I F+ KY+++ +  +   ++
Sbjct: 292 LTTLPGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTDI 347


>gi|55979970|ref|YP_143267.1| DNA polymerase III subunit beta [Thermus thermophilus HB8]
 gi|55771383|dbj|BAD69824.1| DNA polymerase III, beta subunit [Thermus thermophilus HB8]
          Length = 375

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 167/351 (47%), Gaps = 22/351 (6%)

Query: 1   MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57
           M ITV +   SD L LL    RI+  ++  P+  ++ L A +G L +  +  E+++   +
Sbjct: 1   MNITVPKKLLSDQLSLL---ERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRL 57

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           PA       + V A   + +VR L  D   +    E   G ++ +S G     L   P  
Sbjct: 58  PAEAQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAE 117

Query: 117 EFPS--TKEEEYVYSFEL----ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            +P     E E   +F L     S  L   +    +A + EE R    G+    + +  +
Sbjct: 118 GYPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR 177

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIH 229
             AVA+DG+RLA+ ++ +          +VP ++V E++R+L   D +   ++L E  + 
Sbjct: 178 --AVASDGYRLALYDLPLPQGFQA--KAVVPARSVDEMVRVLKGADGAEADLALGEGVLA 233

Query: 230 LNIESLS---MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           L +E  S   M++RL++GEFP+YQ VIP     +++V    LR+AV RVS++S  +   V
Sbjct: 234 LALEGGSGVRMALRLMEGEFPDYQRVIPQEFALKVQVEGEALREAVRRVSVLSDRQNHRV 293

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
            L L   ++ ++ +  D GK  E +        M + +N +YLLE +  + 
Sbjct: 294 DLLLEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPVG 343


>gi|258648469|ref|ZP_05735938.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259]
 gi|260851226|gb|EEX71095.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/389 (26%), Positives = 185/389 (47%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  +  S +   L    R+I  K T+P+    +       LE+ A+  EI +   I   
Sbjct: 1   MKFVISSSVLSARLQSIGRVIAAKTTMPILNCFVFDIKSKRLELTAADNEITLRTYIDLV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D      V+A  + D ++++ +     F  E+ +   V   +G  NF  +S  E   P
Sbjct: 61  ESDADIRFAVNAKTIQDAIKEIPEQPLEIFVNESNMEITVEYQNGKYNFMAESADEYPIP 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               EE ++   + S  L N + R+ FA A + +R  +NGI+F +    L +  VA+DG 
Sbjct: 121 PALNEETMH-VNITSGHLLNAINRSLFAAANDPLRPVMNGIYFDLKTSGLTM--VASDGQ 177

Query: 180 RLAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           ++A    VDI  ++ K  S I+P+K    +  IL  ++ ++ ++    R      +  M+
Sbjct: 178 KMACNTLVDI--KVEKPGSFILPQKPATLLKNILGKEEDTIDMAFDGRRAVFKGTNFEMN 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL +G FPNY  VIP  N   + VN   L  A+ RV I S+     VKL++ + K+ ++
Sbjct: 236 CRLTEGRFPNYAGVIPQDNPNIISVNREALIAALRRVLIFSNAVSSLVKLNIDNGKMRIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNSS 356
             + D    A E++   Y+  P+ I +   +LLE+++N+       +EVVF+L D+S + 
Sbjct: 296 SQDTDYSMSAEENLLCDYSGTPIKIGYRGPFLLELLNNLPG-----EEVVFKLGDASRAG 350

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  + ++ +       +   +LMPM I
Sbjct: 351 LILPTEQEEGE-------DILMLLMPMMI 372


>gi|218245876|ref|YP_002371247.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8801]
 gi|257058924|ref|YP_003136812.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8802]
 gi|218166354|gb|ACK65091.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8801]
 gi|256589090|gb|ACU99976.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8802]
          Length = 393

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 105/407 (25%), Positives = 193/407 (47%), Gaps = 38/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK    +S++   L    R +  + T PV  +VLL A++  G + + A    + I  +  
Sbjct: 1   MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLLVADESKGRVSLTAFDLSLGIQTSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDG--AQISFFKENELGTEV-NISHGDSNFYLQSFPE 115
           A V   G++ + A LL DIV +L +G    I+   E+E  +++  +      F L++   
Sbjct: 61  AEVSQGGTVALPAKLLNDIVSRLPEGEITLIADADESEDDSQIITLKSASGQFQLRAMSA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFPS    E V + +L  S+L   ++ + FA +++E +  L G+      + L+  A  
Sbjct: 121 EEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGVHLAGTVDSLEFAA-- 178

Query: 176 TDGHRLAVAEVDIVAQIAKMP-------------SIIVPRKAVGEILRILSSKDSSVKVS 222
           TDGHRLAV    +  +  +               S+ +P +A+ E+ R+LSS+  S  V+
Sbjct: 179 TDGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTVA 238

Query: 223 L--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           L   E++I   +    ++ R +DG +P Y  +IP    + + V       +++RV++++ 
Sbjct: 239 LYVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLAD 298

Query: 281 VRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +   VK +L  D+  + ++V+  D+GKA ESM         D+ FN KYL++ +  + S
Sbjct: 299 QKNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALPS 358

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +L+  N  V +              +   Y++MP++I
Sbjct: 359 -----QEIQIQLNEGNQPVIL---------TPLGGLKMTYLVMPVQI 391


>gi|332876761|ref|ZP_08444519.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685320|gb|EGJ58159.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 374

 Score =  123 bits (308), Expect = 5e-26,   Method: Compositional matrix adjust.
 Identities = 95/348 (27%), Positives = 171/348 (49%), Gaps = 14/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           M+  V  S +   L    R+I  KNT+P+    L +  D +L I AS  E   IT     
Sbjct: 1   MRFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITNLELV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS---FPE 115
             D      ++A  + D ++++ +   +SF    + +    N  +G  N   QS   +PE
Sbjct: 61  ESDANARFCINAKTIQDSMKEIAE-QPLSFDINPDNMEITANYQNGRFNIVGQSADEYPE 119

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              P    +E + +  + +  + N + R  FA A +E+R  +NG++F I  ++L    V+
Sbjct: 120 MNLP----QEDMNALIIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VS 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGH+L V   +   +  +  + I+P+K    +  +L  +   V +  +E   ++ +ES 
Sbjct: 174 TDGHKL-VRNRNYGIKDHQPAAFILPKKPATILKNLLPKESDDVTLKFNERNAYITMESS 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RLI+G +PNY +VIP +N   + V+   L  A+ RV I S+     +KL L S++L
Sbjct: 233 RLICRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQL 292

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++  + D    A E +   Y + PM+I F   +L++I++N+  + V+
Sbjct: 293 VVSGQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGGENVI 340


>gi|116617176|ref|YP_817547.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096023|gb|ABJ61174.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 378

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 18/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ RS  ++ L    R I  + TIP+  ++ L  ND  L +  S  +I I   +P S
Sbjct: 1   MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNADISIETTVPQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV++L + A       N  G    I+ G S+F +   
Sbjct: 61  DTSAQLIITTPGGITLPATFFINIVKRLPNDA----MTLNIEGLRATITSGASSFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +    +K  A
Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGNSVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           V TD HRL+   V +    A     ++I+P K+  E+  +L  +D  V++  S ++   +
Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           +   +   RL++G +P    +IP  +  ++ +  ++L  A+DR S++S   R   V+LSL
Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
            + +  +T  + ++G+  E +N    E   ++I FN  Y+
Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYV 333


>gi|261417502|ref|YP_003251184.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC61]
 gi|319765159|ref|YP_004130660.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC52]
 gi|261373959|gb|ACX76702.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC61]
 gi|317110025|gb|ADU92517.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC52]
          Length = 378

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 173/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I+++R  + + +    + +  + TIP+   + L A    + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                 VDV   GSI + A    +IV+KL Q   +I    E E      I  G S F L 
Sbjct: 61  KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTVEI----EREDNFLTIIRSGHSEFRLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  E  +L
Sbjct: 117 GLNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGEL 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
              ATD HRLA+ +V I ++     ++++P K++ E+ +IL   +  V + ++ +++   
Sbjct: 175 VCTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFK 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
            E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VKL +
Sbjct: 235 AEHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVKLTT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           L    L ++  +P++GK  E +     E   ++I F+ KY+++ +  +   ++
Sbjct: 295 LPGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTDI 347


>gi|139439856|ref|ZP_01773221.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC
           25986]
 gi|133774784|gb|EBA38604.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC
           25986]
          Length = 367

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/389 (25%), Positives = 193/389 (49%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S + + +G   + +   +T+P+   VL++A DG+LE + S   I I   I A 
Sbjct: 1   MKFTVSQSSLTQAIGVVMKGVASASTLPILSGVLVKAQDGILEFQTSNYTISIRHRIAAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFP 119
           V+  G + +   +L +I + L D A ++F    EL   +V IS   S+F L +   ++FP
Sbjct: 61  VEEEGEMVIPCKMLSNITKTLPD-APVTF----ELSERQVLISCEKSSFRLNTLDANDFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    + EL + +L  +V R     +T++ R  L G+   +    ++L  VATD  
Sbjct: 116 EFPAYAIESAVELPTDILSEMVGRVWRVTSTDKARPILGGVHMKVENNTVRL--VATDSF 173

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV +  +  + +     + VP  A  + L I++S+ +++ +  +++++     + +  
Sbjct: 174 RLAVCDTQVETSTLEGSFELNVPADAFNDALNIMASQ-ATIMIGATDTQVVFEAGNTTYV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLC 296
            R I+G +PNY+ +IP S    ++++      A+ RV++++S    AVK  +   + ++ 
Sbjct: 233 SRRIEGVYPNYKQLIPDSCVTSVKIDVAAFNAALKRVAVIASAN-PAVKFEIDVENGQMG 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  + D   A E+++V        I FNY Y+   ++ +S ++    E+   L S + +
Sbjct: 292 LSSISNDQDLAQETIDVEAEGESGTIAFNYHYIFGCLNALSKEK----EITLELKSYSQA 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  D         K+N  Y++MP+RI
Sbjct: 348 GIFKSYD---------KINYLYLVMPVRI 367


>gi|229542314|ref|ZP_04431374.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1]
 gi|229326734|gb|EEN92409.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1]
          Length = 381

 Score =  123 bits (308), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 95/358 (26%), Positives = 178/358 (49%), Gaps = 25/358 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK ++ R+ ++E +    + I  + TIP+   + + A++  +    S  +I I   +P  
Sbjct: 1   MKFSILRNRLIESVQDVSKAITSRTTIPILTGIKITASEEGITFTGSDSDISIESFVPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                 A +   G I + A +  ++V+KL  D  +I     N+  T   I  G SNF L 
Sbjct: 61  EDGDEIAVIQQTGGIVLQAKIFGELVKKLPMDIVEIEV--ANQFQT--IIRSGKSNFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                E+P   +        + + +LKNL+ +T FA++T E R  L G+ + I     +L
Sbjct: 117 GLDAEEYPHLPQITEDKVIRIPADILKNLIRQTVFAVSTAETRPILTGVNWSIKGS--RL 174

Query: 172 CAVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             +ATD HRLA   AE+++ A      +I++P K++ E+ +IL   +  V + ++++++ 
Sbjct: 175 NCIATDSHRLAQRTAEIEMAADAEY--NIVIPGKSLNELNKILPDSNEPVGIVITDNQVL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VK 287
              + L    RL++G +P+   +IP     E+ VN     QA+DR S+++     A  VK
Sbjct: 233 FKAKHLLFFSRLLEGNYPDTSRLIPTDGKTEIVVNTKEFLQAIDRASLLAKEGQNANVVK 292

Query: 288 LSLSSD---KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           LS  +D    + +T ++P++GK  + +N    E   + I F+ KY+++ +  +   E+
Sbjct: 293 LSSVTDIPGTIEITSNSPEIGKVTDRVNCKSIEGEELKISFSSKYMMDALRALEGTEI 350


>gi|325282257|ref|YP_004254798.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP]
 gi|324314066|gb|ADY25181.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP]
          Length = 360

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 93/367 (25%), Positives = 194/367 (52%), Gaps = 33/367 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +  + E LG   R++  +++ P+   + ++A +  L +  +  E+++    PA 
Sbjct: 1   MKATVTKKVLSEGLGLLERVVPSRSSNPLLTSLKIEATEQGLHLSGTNLEVDLASFAPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQS-----FP 114
           V    +  V AHLL  IVR L  G ++    E EL G E+++  G S+F +Q+     FP
Sbjct: 61  VQNPQAFVVPAHLLSQIVRTL--GGELV---ELELSGDELSVRSGGSDFKIQTGDVAAFP 115

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E  FPS  +        + +S L   +    +A + E  +    G+   + + D     V
Sbjct: 116 ELNFPSQVDAT------VEASDLARALNSVRYAASNEAFQAVFRGV--KLEKRDNGARVV 167

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+DG+R+A+ +  +  ++ ++   I+P ++V E++R+L  +D   K+S  E ++ +  + 
Sbjct: 168 ASDGYRVALHDFALEGEVREL---IMPARSVDELVRML--RDGEAKLSYGEGQLSVTTDR 222

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293
           + M+++L+DGEFP+Y+ VIP     ++++   +L+++V RV++++       V+  ++  
Sbjct: 223 VRMNLKLLDGEFPDYERVIPTDTKLQVKLPSGSLKESVGRVAVLADKNANNRVEFLVTEG 282

Query: 294 KLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           +L +  +  D G+A ++++V  +  E  + + FN KY+ + +  I  +     E++F  +
Sbjct: 283 QLQLNAEG-DYGRAHDTLSVEQSGTEPAISLAFNAKYVQDALGPIEGEA----EMLF-AE 336

Query: 352 SSNSSVF 358
           S+  ++F
Sbjct: 337 STKPAIF 343


>gi|46199911|ref|YP_005578.1| DNA polymerase III, beta chain [Thermus thermophilus HB27]
 gi|46197538|gb|AAS81951.1| DNA polymerase III, beta chain [Thermus thermophilus HB27]
          Length = 375

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 166/351 (47%), Gaps = 22/351 (6%)

Query: 1   MKITVER---SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57
           M ITV +   SD L LL    RI+  ++  P+  ++ L A +G L +  +  E+++   +
Sbjct: 1   MNITVPKKLLSDQLSLL---ERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRL 57

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           PA       + V A   + +VR L  D   +    E   G ++ +S G     L   P  
Sbjct: 58  PAEAQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAE 117

Query: 117 EFPS--TKEEEYVYSFEL----ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            +P     E E   +F L     S  L   +    +A + EE R    G+    + +  +
Sbjct: 118 GYPELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR 177

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIH 229
             AVA+DG+RLA+ ++ +          +VP ++V E++R+L   D +   ++L E  + 
Sbjct: 178 --AVASDGYRLALYDLPLPQGFQA--KAVVPARSVDEMVRVLKGADGAEADLALGEGVLA 233

Query: 230 LNIESLS---MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           L +E  S   M++RL++GEFP+YQ VIP      ++V    LR+AV RVS++S  +   V
Sbjct: 234 LALEGGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRV 293

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
            L L   ++ ++ +  D GK  E +        M + +N +YLLE +  + 
Sbjct: 294 DLLLEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALAPVG 343


>gi|282879819|ref|ZP_06288548.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306329|gb|EFA98360.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 374

 Score =  122 bits (307), Expect = 6e-26,   Method: Compositional matrix adjust.
 Identities = 99/348 (28%), Positives = 166/348 (47%), Gaps = 14/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+ T+  S +   L    ++I  KN++P+  C +   AN+   E+K +  + E       
Sbjct: 1   MRFTLSSSALNNRLQTLSKVINLKNSLPILDCFLFDVANN---ELKITASDSENVMQTSV 57

Query: 60  SVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           S+D C   G   V    + D V++L +           L  ++   +G  NF  Q+   +
Sbjct: 58  SLDECDGNGKFAVPNRTILDAVKELPEQPLTFDVDTEHLTIKILYQNGVYNFTAQN--AA 115

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           E+P T E  +      + + VL N + R+ FA A +E+R  +NGI+F +  E L +  VA
Sbjct: 116 EYPQTSEIPDGATVVTIGADVLNNNINRSLFATAQDELRPVMNGIYFDLTPEGLAI--VA 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           +DGH+L V   +   +     S I+P+K    +  +L+  +  V +        +  E  
Sbjct: 174 SDGHKL-VRNKNFEIKSDTPASFILPKKPATLLRTVLTKGEGDVVIKFDNRNAEIRYEGG 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           S+S RLI+G++PNY +VIP  N  +L V+   L  A+ RV   +S   Q ++L L + KL
Sbjct: 233 SLSCRLIEGKYPNYNSVIPQDNPNQLNVDRKGLLGALRRVLPFASESSQLIRLHLETGKL 292

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++ ++ D    A E +   Y    M I F    L +I+ N+ SDEV 
Sbjct: 293 ELSSEDVDFATSAKEQIVCDYTGQTMSIGFKGSSLTDILTNLDSDEVT 340


>gi|222107075|ref|YP_002547866.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
 gi|221738254|gb|ACM39150.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
          Length = 378

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/339 (28%), Positives = 162/339 (47%), Gaps = 4/339 (1%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V RS IL  L      ++ ++ IP+  +VLL  N   L +  +   +E+  +        
Sbjct: 9   VHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLESAS 68

Query: 65  GS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G+ +T+S   L DIV+   + A+I F   ++L  +V +  G S F L +    +FP+   
Sbjct: 69  GNPLTLSGKALLDIVKSFSEVAEIEF-SFDDLRGQVRVKSGRSRFLLATLHADQFPTIAS 127

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
                S  +    L + + R  +A+   + R YL+GIF H  E + K+  VA DGH LAV
Sbjct: 128 LASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNLAV 187

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
                 A     P  I+P KA+  I R+     +S +V +S+  I +    + ++ +LID
Sbjct: 188 VRFPCEAG-TTFPGAIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKLID 246

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNP 302
             +P+Y   IP  N   + V+  +L  AV RV ++    +   +KL  S+  L +++   
Sbjct: 247 AVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMAAT 306

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           D  +A+E +   YN   + I FN  YL + + +I + +V
Sbjct: 307 DGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTDV 345


>gi|325854307|ref|ZP_08171506.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A]
 gi|327313529|ref|YP_004328966.1| DNA polymerase III subunit beta [Prevotella denticola F0289]
 gi|325484101|gb|EGC87035.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A]
 gi|326944906|gb|AEA20791.1| DNA polymerase III, beta subunit [Prevotella denticola F0289]
          Length = 374

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 90/329 (27%), Positives = 165/329 (50%), Gaps = 12/329 (3%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75
           R+I  KN++P+    L + +DG L I AS  E  + G +  +++ C   G   V+ H + 
Sbjct: 19  RVINSKNSLPILDCFLFEVHDGQLTITASDSENIMRGTL--NLENCEGEGDFAVNNHTIL 76

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134
           D V++L +          E+   V   +G  NF +      E+P  +   E   +  + +
Sbjct: 77  DAVKELPEQPLALNVNMEEMKIYVTYQNGSYNFPI--LGADEYPKVQPMSETATTVTIGA 134

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
             L + + R+ FA A +E+R  +NGI+F + E+ L +  VA+DGH+L V   +   +   
Sbjct: 135 EKLSDSLTRSLFATAQDELRPVMNGIYFDLKEDGLAI--VASDGHKL-VRNRNFSVKSET 191

Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             + ++P+K    +  +LS     V +   +    ++    +++ RLI+G++PNY +VIP
Sbjct: 192 PAAFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLACRLIEGKYPNYNSVIP 251

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313
             N  ++ ++  +L  A+ RV   +S   Q ++  +SS  L +  ++ D    A ES+  
Sbjct: 252 LDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSSGLLELNAEDIDFSTSAKESIVC 311

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            Y   PM I F    +L+I++N+ SD+VV
Sbjct: 312 EYGGNPMSIGFKGSSMLDILNNLESDDVV 340


>gi|312869207|ref|ZP_07729379.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3]
 gi|311095228|gb|EFQ53500.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3]
          Length = 380

 Score =  122 bits (307), Expect = 7e-26,   Method: Compositional matrix adjust.
 Identities = 95/341 (27%), Positives = 169/341 (49%), Gaps = 17/341 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T+ R+  +  L +  R I  K TIP+   + +  +   + +  S  +I I   I AS
Sbjct: 1   MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   G+I + A    +IV+KL D  Q++    N  G + +I+ G + F +   
Sbjct: 61  DEDYGLTVKEAGAIVLPARFFSEIVKKLPD-KQVTIEVTN--GFQADITSGTAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             S FP   E E   +  L + VLK ++ +T  A++ +E R  L G+ F +  +D  L A
Sbjct: 118 DASNFPHLPEIESDNTITLPTDVLKEVIRQTVIAVSKQESRPILAGVHFTL--KDGLLTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRLA  +V +    + +   II+P K++ E+  ++   +  VKV +SE+++    
Sbjct: 176 VATDSHRLAQRKVALENVDSSINFDIIIPGKSLDELSGMMGDGNEDVKVQVSENQVLFIF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL- 290
            +     RL++G +P    +IP ++D  + V       ++DR S++S   R   VKL++ 
Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLTIQ 295

Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
            ++ ++ ++ D+PD+G   E +     E   ++I FN  Y+
Sbjct: 296 PANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYM 336


>gi|163790920|ref|ZP_02185343.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7]
 gi|159873762|gb|EDP67843.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7]
          Length = 380

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 172/342 (50%), Gaps = 19/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++RS  L+ L    R I  + TIP+   + + AND  L +  S  +I I   IP S
Sbjct: 1   MKFTIKRSAFLKSLADVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++  G I + A    +IV+KL ++   I          +  I+   ++F +  
Sbjct: 61  EEENLLTIEKTGGIVLQARFFSEIVKKLPEETMTIEILDH----FQALITSATASFRING 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              + +P     +   +F L  ++ K ++ +T  A++T E R  L G+   I  E  K  
Sbjct: 117 LDPNNYPHLPIIDTSETFTLPVNLFKQVIGQTVIAISTHESRPILTGVNIVIENE--KFL 174

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           AVATD HRL+   + I     Q  K  +II+P K++ E+ R L     ++++ ++E+++ 
Sbjct: 175 AVATDSHRLSQRVIPIEMNDEQATKKYNIIIPGKSLIELSRTLDETSDTIEMMITENQVL 234

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E+L    RL++G +P+ + +IP ++  E+  N + L  +++R S++S   +   VK+
Sbjct: 235 FKAENLYFYSRLLEGYYPDTKRLIPDNSSTEISFNASALLGSIERASLLSHEGKNNVVKI 294

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
           +++ D + ++ ++PD+G   E +     E  P+++ FN  Y+
Sbjct: 295 TITPDLIEISGNSPDVGNVKEELEYLSVEGEPIELSFNPDYM 336


>gi|124004099|ref|ZP_01688946.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134]
 gi|123990678|gb|EAY30158.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134]
          Length = 376

 Score =  122 bits (307), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 6/343 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V  + +   L     +I     +P+  + L    DG L   AS  +  IT  I   
Sbjct: 1   MKFSVSSALLQRQLSAISGVIMSSPVVPILENFLFVLEDGKLIASASDLQTSITTEIEVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A +L D ++ L +  Q   F  +E    V I+    ++ L      EFP 
Sbjct: 61  TQDTGSVAVPAKILLDTLKSLPE--QPVTFSIDEEHKSVEITSNTGHYKLAGENADEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +   +  L+S +L   +  T FA + +E+R  + GI+    E+      VATDGHR
Sbjct: 119 IAQADSKLNIALSSDILGKAIGNTIFATSNDELRPAMTGIYIQFKED--HTLFVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   + + V       ++I+P+K++G +   L +    V    S+S    + + + M  R
Sbjct: 177 LIRYKREDVVGGGDPMTMIIPKKSLGLLRSTLPNDPVEVHAEFSDSNAFFSFDDIKMVCR 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMTV 299
           LID  FP+Y+N IP  N   L ++  +L  ++ R++I ++     ++L ++ +  L +  
Sbjct: 237 LIDERFPDYENAIPTDNPNVLTIDRVSLLNSLKRLAIYANKSTNQIRLKMTAAGTLQIFA 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ D   +A E++   Y    ++I FN K+++E++ NI++ E+
Sbjct: 297 EDLDFSNEANEALACEYQGDDLEIGFNAKFVIEMLSNITAKEI 339


>gi|75812736|ref|YP_320353.1| DNA polymerase III beta subunit family protein [Anabaena variabilis
           ATCC 29413]
 gi|75705492|gb|ABA25164.1| DNA polymerase III, beta chain [Anabaena variabilis ATCC 29413]
          Length = 444

 Score =  122 bits (306), Expect = 8e-26,   Method: Compositional matrix adjust.
 Identities = 106/394 (26%), Positives = 191/394 (48%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK+ +E+S + E+L  A   I  K T P+  ++LL AN DG++    +   + I     A
Sbjct: 1   MKLNIEQSKLAEILETAYLAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V+  G + + A LL D +  ++   +IS   EN+      I+H      L      EFP
Sbjct: 61  NVETSGQVALPAKLLTDTINNVR--GEISLEVENQACI---ITHNSGKCRLIGGKPDEFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E      L++  L+  +E T +    +E +  L G+ F I+    K  A +T+GH
Sbjct: 116 TLPKGENPIEVNLSAKKLQTALEGTLYCTNGDETKLVLTGVNFKIDTN--KWQAASTNGH 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSV-KVSLSESRIHLNIESLSM 237
           +LA+    + ++ +      VP K++GE+ +ILS S D+SV  + LS   I  ++ +  +
Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLGELNKILSQSADTSVCNILLSNKTIEFSLPNTKV 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295
             RL++GE+P   ++IP + + E  +       A+ RVS ++  + + VK+   L + + 
Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293

Query: 296 CMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            +  +  D+G A++S+       ++E  + I  N  YLLE + +IS+     DE+V R +
Sbjct: 294 TLYTEATDIGDAVDSVLMKPTTSHSEN-ISIGLNIDYLLEGLKHIST-----DEIVVRCN 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                V I              +N  Y++MP+ I
Sbjct: 348 KPTQPVIICP--------MGGLLNQLYLVMPVEI 373


>gi|123967537|ref|YP_001008395.1| DNA polymerase III subunit beta [Prochlorococcus marinus str.
           AS9601]
 gi|123197647|gb|ABM69288.1| DNA polymerase III, beta chain [Prochlorococcus marinus str.
           AS9601]
          Length = 385

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 93/356 (26%), Positives = 182/356 (51%), Gaps = 17/356 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A++G  +I  +G ++   I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISVTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL +   +S  + +E    + I     +F L+  P  E+
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPNETPVSL-EVDENSDNILIKSDRGSFNLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIEPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +    QI             S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGKEEQIENKENLSSNVDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K +  N   L  +++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKIINFNTKKLIDSLERIAVLADQQSSVVK 297

Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + L  +D   ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S+ V+
Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353


>gi|212694909|ref|ZP_03303037.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855]
 gi|212662469|gb|EEB23043.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855]
          Length = 340

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 84/311 (27%), Positives = 155/311 (49%), Gaps = 8/311 (2%)

Query: 35  LQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN 93
           ++  DG L + AS  E  ++ ++  +  D  G   VS+  + + ++++ +  Q   F  N
Sbjct: 1   MELTDGTLSLTASDSETTLSTSLEVNESDGDGRFAVSSKTILEALKEIPE--QPLTFLVN 58

Query: 94  ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEE 152
               E+ + + +  + L      E+P             + + V+   + R+ FA A +E
Sbjct: 59  TENLEITVQYQNGKYSLMGQNADEYPQAPALGANAVHVTMGAPVMLAGINRSLFATADDE 118

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
           +R  +NGI+F I  ED+    VA+DGH+L V     VA   +  + I+P+K    +  +L
Sbjct: 119 LRPVMNGIYFDITTEDITF--VASDGHKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLL 175

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
             +   V++   +      +E+ SM  RLI+G +PNY +VIP  N  +  ++   L  A+
Sbjct: 176 PKEQGDVQIDFDDRNATFTLENYSMICRLIEGRYPNYNSVIPQDNPHKATIDRMTLISAL 235

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLE 331
            RVS+ SS     +KL LS +++ ++  + D    A E++   Y   PM I F   +L++
Sbjct: 236 RRVSVFSSQASSLIKLRLSENQIQISAQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLID 295

Query: 332 IIDNISSDEVV 342
           I++NIS+ E++
Sbjct: 296 ILNNISAQEIL 306


>gi|189499002|ref|YP_001958472.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1]
 gi|189494443|gb|ACE02991.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1]
          Length = 374

 Score =  122 bits (306), Expect = 9e-26,   Method: Compositional matrix adjust.
 Identities = 100/389 (25%), Positives = 194/389 (49%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T       E +  A + I  K   P   ++ L  ++ +L + A+  EI IT      
Sbjct: 1   MKFTTSIKHFQEAVNKAIQAIPNKVLDPRFENLHLNIDNRILTLFATDGEISITATTDVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
               G + + A  + D +R + D  +++F  E +  +E   VNI+     + +    ES+
Sbjct: 61  SSDKGDLGMRARTILDFLRSMYD-TEVNFEIERQQMSEQGIVNIATDKGRYTIPCSFESK 119

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
               +E+ +   F+L +  L N++++T FA + + +R  + G+ F I E++L L A+ATD
Sbjct: 120 -AEKQEKTFDIEFDLTAGDLLNIIQKTTFACSIDGMRPAMMGVLFEI-EQNL-LSAIATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRL          +++   I++P + +  + +++S  +  + +  +   I  + ESL +
Sbjct: 177 GHRLVRFRKTCEVSLSEKQRIVIPARVLSILQKLVSEGNIRISIDSANRSIRFSTESLVL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              LI  ++PNY+ VIP  NDK+L +   +   +V RV   S+  I  ++ S+S   + +
Sbjct: 237 DAALIVEQYPNYEAVIPLENDKKLSIERASFYDSVKRVGRFSN--IGDIRFSISPSTMKL 294

Query: 298 TVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           T +N + G+ A E +   Y+  P++I FN K++   + +I      DD ++  L +  ++
Sbjct: 295 TAENINEGESAQEDLACSYDNEPIEIGFNSKFIEAALAHID-----DDSLIVELSTPTTA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V ++  +K+ +N      N   ++MP+RI
Sbjct: 350 VILK-PEKEKENE-----NMMILVMPVRI 372


>gi|312888869|ref|ZP_07748431.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311298610|gb|EFQ75717.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 374

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 168/342 (49%), Gaps = 6/342 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L      +     +P+  + L +  D  L I A+  +  +T ++   
Sbjct: 1   MRFIVSTSTLLKQLQAVSGALSSSTVLPILENFLFEIKDSNLTISATDLQTSMTTSLSVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + + +L D ++ L +  Q   F  ++    + I+ GD  + L      +FP 
Sbjct: 61  AKENGRVAIPSRILLDTLKSLPE--QPIAFSVDDKTFAIEINAGDGKYKLSGENGDDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L +SVL   + +T FA++ +E+R  + G+F  ++   L    VATD H+
Sbjct: 119 IPVVENASSVNLPASVLAEAINKTIFAVSNDELRPAMTGVFCQLSTTSLTF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V      A+ A   S I+P+KA+  +   L S ++SV V  + +       ++++  R
Sbjct: 177 L-VRYRRKDAKAAGTTSFILPKKALNLLKSSLPSDETSVAVEYNNTSAFFKFGNINLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++      ++ RV+I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPQTNPNKLLIDRQAFLGSLSRVAIYANKTTHQVRLKINGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + D   +A E +   Y    M+I FN ++L+E++ N+ S EV
Sbjct: 296 DIDFANEAHERLTCQYEGDDMEIGFNARFLIEMLKNLGSAEV 337


>gi|297528378|ref|YP_003669653.1| DNA polymerase III subunit beta [Geobacillus sp. C56-T3]
 gi|297251630|gb|ADI25076.1| DNA polymerase III, beta subunit [Geobacillus sp. C56-T3]
          Length = 378

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 95/356 (26%), Positives = 174/356 (48%), Gaps = 24/356 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I+++R  + + +    + +  + TIP+   + L A    + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATALGVTLTGSDSDISIESFIPLE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNF 108
                 VDV   GSI + A    +IV+KL         +  E+ TE N    I  G S F
Sbjct: 61  KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQ-------QTVEIETEDNFLTIIRSGHSEF 113

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L      E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  E 
Sbjct: 114 RLNGLNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EH 171

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
            +L   ATD HRLA+ +V I ++     ++++P K++ E+ +IL   +  V + ++ +++
Sbjct: 172 GELVCTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQV 231

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VK
Sbjct: 232 LFKAEHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVK 291

Query: 288 L-SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           L +L    L ++  +P++GK  E +     E   ++I F+ KY+++ +  +   ++
Sbjct: 292 LTTLPGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTDI 347


>gi|126658042|ref|ZP_01729194.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
 gi|126620680|gb|EAZ91397.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
          Length = 393

 Score =  122 bits (306), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/411 (24%), Positives = 194/411 (47%), Gaps = 46/411 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +SD+   L    R +  + T P+  +VL+ A+     +  +  ++ +      S
Sbjct: 1   MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLMVADSQKNRVSLTAFDLSLGIETSFS 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH------GDSNFYLQS 112
            DV   G IT+ A LL DIV +L +G +I+   E    TE N SH          F +++
Sbjct: 61  ADVSEDGQITLPAKLLNDIVSRLPEG-EITLMSEE---TENNDSHIVALKCASGQFQVRA 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   S +L   +L   ++   FA +++E +  L G+      + L+  
Sbjct: 117 MDAEEFPPLPTVEEGESLQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEFA 176

Query: 173 AVATDGHRLAVAEVDIVAQI---------AKMP-----SIIVPRKAVGEILRILSSKDSS 218
           A  TDGHRL+V E  +  Q          ++MP     ++ +P +A+ E+ R++ +++ S
Sbjct: 177 A--TDGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRNES 234

Query: 219 VKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             ++L   E+++   +    ++VR +DG +PNYQ +IP    + + +    L  +++RV+
Sbjct: 235 DAIALQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVA 294

Query: 277 IMSSVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           +++  +   VK + + +  ++ ++V+  D+G A ESM         +I FN KYL++ + 
Sbjct: 295 VLADQKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLK 354

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +      E+  +L+  N  V           N    +   Y++MP++I
Sbjct: 355 ALPT-----KEIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391


>gi|78043484|ref|YP_361491.1| DNA polymerase III subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995599|gb|ABB14498.1| DNA polymerase III, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 371

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 173/346 (50%), Gaps = 11/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK T   S + E +  A + +  K+  PV   +L +AN+    + + A+  ++ +  + P
Sbjct: 1   MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   GS+ +++  L DI++KL +   +  +  NE   +  I +G S   + ++   EF
Sbjct: 61  AKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNE--GKCVIKYGASEVSVATYRPEEF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +E     SF ++       +++  FA  T+E R    G+ F I  ++L+L  VA+D 
Sbjct: 119 PKNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRL--VASDT 176

Query: 179 HRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRLA  +  I  +   K  ++I+P + + E +RI  + D  + + +SE ++  +   + +
Sbjct: 177 HRLAFRKTFIKREDTGKNINVIIPSRTLHEAVRIFGTVDE-LLIKISEGQVEFSGNGIKL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKL 295
           + RLI+G+FPNYQ VIP +    + +N      +++R +++     +    K  L  + +
Sbjct: 236 TSRLIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENM 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +T  + + G   E + +        + FN +YL++++  + ++E+
Sbjct: 296 IITSQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLETEEI 340


>gi|291513941|emb|CBK63151.1| DNA polymerase III, beta subunit [Alistipes shahii WAL 8301]
          Length = 374

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 190/390 (48%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK +V  S +L LL    ++I  KNT+P+  + LL+ N   L++  S  E  + G I   
Sbjct: 1   MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLLELNGNTLQVTTSDLETTLVGQIEVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPESEF 118
           SV+  G+I   A L+ D    L++  ++    E N+   E+ I+    +  +       +
Sbjct: 61  SVESEGTIAAPAKLMLD---SLKEFPELPLTIEVNDKNWEIKINWKSGSLSIPGASAVSY 117

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +         L    L N + +T FA A +E+R  +NGI+ ++  + L    V TD
Sbjct: 118 PAVPQLNAEKKELRLDVDTLVNGINKTIFATADDELRPVMNGIYINLAPDALTF--VGTD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            H+L   E +   ++    S I+P+K    +  +L  +D +++++         ++S ++
Sbjct: 176 AHKLVKYEAETENEVTA--SFILPKKPANLLKSVLLKEDDAIEMAFDSKNALFKLKSHTL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+G +PNY  VIP +N  ++ V+   L   + RV++ S+     +++ ++ +++ +
Sbjct: 234 VCRLIEGNYPNYNAVIPSNNPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRITL 293

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           T  + D    A E+++  Y+  P+ I F   +L+EI+ N+ +  V    VV   DS+ + 
Sbjct: 294 TAQDIDFSVSANETISCSYDGQPISIGFKSTFLVEILSNMDTPTV----VVELADSTRAG 349

Query: 357 VFIRGKDKDSKNNKDNKVNA-FYVLMPMRI 385
           VF    D       D + +A   +LMPM I
Sbjct: 350 VFKPVYD-------DKQPSATLMLLMPMMI 372


>gi|126695338|ref|YP_001090224.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9301]
 gi|126542381|gb|ABO16623.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9301]
          Length = 385

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 181/356 (50%), Gaps = 17/356 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A+ G  +I  +G ++   I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISVTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            ++   G+IT+ + LL +IV KL +   +S   E E    + I     +F L+  P  E+
Sbjct: 61  GTIKNSGAITIPSKLLSEIVNKLPNETPVSLEVE-ENSDNILIKSDRGSFNLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVA----EVDI-----VAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA    E DI     ++      S+ +P +++ EI +++S  S + S+K+   + +
Sbjct: 178 HRLAVALIGNEEDIENKENLSSNVDNLSVTIPNRSLREIEKLVSLRSSEKSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K L  N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTKKLIDALERIAVLADQQSSVVK 297

Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + L  +D   ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S+ V+
Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353


>gi|288928330|ref|ZP_06422177.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331164|gb|EFC69748.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 375

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 92/334 (27%), Positives = 167/334 (50%), Gaps = 12/334 (3%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAH 72
           L +  + +  K +IP+  + L +  DG+L +  S  E  +  A+     D  G  TV + 
Sbjct: 14  LQNLAKTLSAKPSIPILNNFLFEVVDGVLTLTTSDSETTMKAALKLDESDSNGRFTVPSR 73

Query: 73  LLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYS 129
            + D  R+L D  Q   F  N   +  ++   +G  NF  Q+    E+P  KE      S
Sbjct: 74  TILDATRELPD--QPLHFDINLETMAVQITYQNGVYNFTAQT--AEEYPRNKELAADAAS 129

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
            ++ S+VL N + R+ FA   +E+R  +NGI+F + E+ L +  VATDGH+L   + + +
Sbjct: 130 IQMESAVLLNSIVRSIFATGQDELRPIMNGIYFDLKEDGLAI--VATDGHKLVKNKNNAI 187

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
               K  S ++ +K    +  IL+   + V++   +    ++  +  +S RL++G +PNY
Sbjct: 188 RSDVKR-SFVLAKKPASLLRNILTKDATMVEIKFDDRNAEVHFPNGMLSCRLVEGNYPNY 246

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAI 308
           ++VIP  N  ++ ++   L   + RV   +S   Q ++L +    + ++ ++ D    A 
Sbjct: 247 ESVIPKDNPNQITLDRKGLVSVLRRVLPFASESSQLIRLHIEQGLIELSSEDIDFATSAK 306

Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ESM   Y   PM+I F    L ++++N+ SD+VV
Sbjct: 307 ESMVCDYVGIPMNIGFKGSVLGDVLNNLDSDDVV 340


>gi|281424379|ref|ZP_06255292.1| DNA polymerase III, beta subunit [Prevotella oris F0302]
 gi|281401648|gb|EFB32479.1| DNA polymerase III, beta subunit [Prevotella oris F0302]
          Length = 373

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 109/388 (28%), Positives = 189/388 (48%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  S +   L    ++I  KN++P+    L + ++  L+I AS  E  +T  +  S
Sbjct: 1   MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE-LGTEVNISHGDSNFYLQSFPESEF 118
             D  GS  V    + D V++L +   +SF  + E L  ++   +G  NF  Q+    E+
Sbjct: 61  ECDGEGSFAVPNRTILDAVKELPE-QPLSFDVDIEALTIKILYQNGMYNFTAQN--ADEY 117

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P T+   +      + S+ L + + R+ FA AT+E+R  +NGI+F +  +   L  VATD
Sbjct: 118 PHTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GH+L V   D   +     S I+P+K    +  +LS  D+ V +   +    +      +
Sbjct: 176 GHKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  + + KL +
Sbjct: 235 TCRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEV 293

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNS 355
           + ++ D    A E +   YN   M I F    L +I++N+ S     DEV+F+L D S +
Sbjct: 294 SSEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDS-----DEVIFQLADPSRA 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            V +  +  ++        N   ++MPM
Sbjct: 349 GVIVPAQQPEN-------ANILMLIMPM 369


>gi|152973856|ref|YP_001373373.1| DNA polymerase III subunit beta [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022608|gb|ABS20378.1| DNA polymerase III, beta subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 381

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 89/356 (25%), Positives = 179/356 (50%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDSDISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  EDGKEIVEVSQSGSIVLQAKYFSEIVKKLPKDIVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L  
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSEL-- 174

Query: 172 CAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             +ATD HRLA+    I           ++++P K++ E+ +IL   +  V + ++E ++
Sbjct: 175 TCIATDSHRLALRTAKIEGHNISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQV 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
               + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VK
Sbjct: 235 LFRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVK 294

Query: 288 LSLSSDKLC-MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS    K+  ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 295 LSTFEQKMLEISSNSPEIGKVVEEVQCEKIDGEELKISFSAKYMMDALKALDSTEI 350


>gi|238926598|ref|ZP_04658358.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531]
 gi|238885544|gb|EEQ49182.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531]
          Length = 380

 Score =  122 bits (305), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 102/399 (25%), Positives = 192/399 (48%), Gaps = 36/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +++++  L    + +  K   P+   V + A +G LE++++  E+     IPA 
Sbjct: 1   MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  +    L +  RKL    ++S   E+  G    I  G + F L++   ++FP 
Sbjct: 61  IRSTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGL-AEICSGTARFTLRTMEVTDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIR---YYLNGIFFHINEEDLKLCAVATD 177
               +    F +  +VL  LV+++ FA   EE R       G    ++    K+   AT+
Sbjct: 119 LHRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVDGH--KVTFAATN 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
            HRLAV    +  +  ++  II+P + + E+ R ++S   S V +S + ++I ++ +++ 
Sbjct: 177 VHRLAVKSESLETEAGQI-CIIIPARFLEEVTRTMTSDVPSDVNISCTYNQISISFDNIY 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCT----NLRQAVDRVSIMSSV-RIQAVKLSLS 291
           M+ RLI+G FP+Y+ VIP   D  +R   T        AV+R S+++   +   VKLS +
Sbjct: 236 MTSRLIEGTFPDYRRVIP--QDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFA 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              + ++ ++P++G+A E++        + I FN  YL++ + ++ S     D  +  L 
Sbjct: 294 DGTMRISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDS-----DTCILSLQ 348

Query: 352 SSN------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            SN      S + IR         ++   N  YV+ P+R
Sbjct: 349 GSNEQGVNLSPITIR---------EEADPNYIYVVTPVR 378


>gi|224367125|ref|YP_002601288.1| DnaN [Desulfobacterium autotrophicum HRM2]
 gi|223689841|gb|ACN13124.1| DnaN [Desulfobacterium autotrophicum HRM2]
          Length = 371

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 90/371 (24%), Positives = 190/371 (51%), Gaps = 17/371 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + +R  + E+L     I  +K  + ++  VL++ +   + I A+  E    G   A 
Sbjct: 1   MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFP 119
           ++  G I ++A  LY+I+R+  D AQ+     NE+    V I   +  +++ S     FP
Sbjct: 61  IESDGIIAINAKKLYEIIREYPD-AQVPL---NEIENRWVEIGKDNIQYHIVSSDYENFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVE-RTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVAT 176
            T   E +   E+ S+  K +VE     A + +E R Y+ G  F    +E   +L  V+T
Sbjct: 117 ETPLIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVST 176

Query: 177 DGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           D  RL   +     ++  +P  ++I+P+K + E+ R L  ++ SV + + +  + +  ++
Sbjct: 177 DSRRLNSFDASYEGELV-LPDENVIIPKKGLSELGRFLD-REGSVNIGIKDDHLIVQKQN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++ ++L++G++P+Y+ V+      ++ ++ + L   + R+SI+SS   ++V  + + ++
Sbjct: 235 ETLMIKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENE 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T+ NP++G++ E + + Y     +  FN +Y ++ +++I+S     D V+  +  + 
Sbjct: 295 LVVTITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINS-----DTVILNVKGAK 349

Query: 355 SSVFIRGKDKD 365
               I+G D D
Sbjct: 350 HPCIIKGLDDD 360


>gi|212551001|ref|YP_002309318.1| DNA polymerase III beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549239|dbj|BAG83907.1| DNA polymerase III beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 374

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 97/345 (28%), Positives = 172/345 (49%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +  + +L  L    ++I  KN IP+    L Q +D  L I  +  E  IT      
Sbjct: 1   MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           + +  G   + +  L D +R+L D  Q   F  NE   EV I + +  +   +    E+P
Sbjct: 61  NAEGEGKFAIPSKNLLDALRELPD--QPITFVINETNNEVLIYYENGKYSFIAQNGDEYP 118

Query: 120 STKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           ++K  +  V+   + +  L N +  T FA A +E+R  +N IFF ++ E  ++  VA+DG
Sbjct: 119 TSKPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPE--RVIFVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +   ++   K  S I+PRK    +  IL  ++    ++   + IH+ +   ++ 
Sbjct: 177 HKLVRLKNSRLSG-NKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  VIP  +   + V+  N   A+ RV++ S+     +KL + ++K+ +T
Sbjct: 236 SRLIEGHYPNYNAVIPNESPYRIIVDRLNFLNALKRVTLFSNPGNSLIKLQILANKIFIT 295

Query: 299 VDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D   A E + +  Y    + I F   YL+E+++NISS+E++
Sbjct: 296 AQDIDYSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSNEII 340


>gi|126651996|ref|ZP_01724188.1| DNA polymerase III subunit beta [Bacillus sp. B14905]
 gi|126591265|gb|EAZ85374.1| DNA polymerase III subunit beta [Bacillus sp. B14905]
          Length = 378

 Score =  121 bits (304), Expect = 1e-25,   Method: Compositional matrix adjust.
 Identities = 98/358 (27%), Positives = 173/358 (48%), Gaps = 26/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +LE L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI V A +  +IVRKL  +  +I        G + +I  G S F+L 
Sbjct: 61  EDGQQIIHIAETGSIVVQARMFNEIVRKLPTNDVEIHVTP----GFQTHIRSGKSEFHLI 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
               +E+P   E      F + + +LK ++  T  A+AT E R  L G+ + I  E L +
Sbjct: 117 GSDAAEYPLLPELTEDQKFTIPADLLKTIIRETVLAVATSESRPVLTGVNWQIKNETL-I 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           C VATD HRLA  +V    Q+  +P    S+++P K++ E+ ++L    + V++ ++  +
Sbjct: 176 C-VATDSHRLARRKV----QLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQ 230

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
           +      +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V
Sbjct: 231 VLFKTGDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVV 290

Query: 287 KLS-LSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
           +   L    + ++ ++P++GK  E + V   E   + I F+ KY++E +  I   +VV
Sbjct: 291 RFEILGHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQDVV 348


>gi|134096622|ref|YP_001102283.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005724|ref|ZP_06563697.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909245|emb|CAL99357.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 374

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 111/396 (28%), Positives = 183/396 (46%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           MKI VER  + + +    R +  +  +PV   VLL A+ G  L I     E+     I A
Sbjct: 1   MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDASSGEALTISGFDYEVSAQVTIDA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116
           S+D  G   VS  LL DI + L +       +  E+   G+ V I+ G S F L + P  
Sbjct: 61  SIDSTGRTLVSGRLLADITKALPN-------RPVEITVDGSRVTITCGSSRFSLPTMPVE 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNL----VERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           ++P     E     + A SV  +L    V +   A   ++    L G+   IN +  +L 
Sbjct: 114 DYP-----ELPAMPDHAGSVPGDLFSEAVSQVAVAAGKDDTLPMLTGVRMEINAD--RLT 166

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIH 229
            VATD  RLA+ E         +  S++VP K + +  + L +  + V++SL+  +  + 
Sbjct: 167 MVATDRFRLAMREFTWEPGTTIEDTSVLVPAKTLSDSAKTLGTGGNKVEISLASGDGLLG 226

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           L+  S   + RL+D EFP Y+ ++P  +     V+   L +A+ RVS+++  R   V+L 
Sbjct: 227 LSGNSRRSTTRLLDAEFPKYRQLLPSESAVTAVVDVAPLVEAIKRVSLVAE-RGTQVRLE 285

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S   L +T    D G A E + V      + I FN  YLL+ +  + SD     +++F 
Sbjct: 286 FSDAGLRLTAGGDDEGSAEEELPVELVGEALTIAFNPAYLLDGLGALKSDRA---QMLF- 341

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +SN    ++   +D +  +       Y+LMP+R+
Sbjct: 342 -TTSNRPAVLKPVGEDGEVAE----GYLYLLMPVRL 372


>gi|291288759|ref|YP_003505575.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885919|gb|ADD69619.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 368

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 90/340 (26%), Positives = 165/340 (48%), Gaps = 7/340 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    + +I   +  A      KN   V  ++L+ A    + ++A+  ++  +G IP S
Sbjct: 1   MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIPVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVS   L DI++++ DG+ I F  +   G+++NI  G S+F L +     FP+
Sbjct: 61  VEETGTATVSGKKLLDIIKEIPDGSVIDFSFD---GSKINIDSGKSSFKLSTISHEIFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    Y  ++ SS+L NL+++T F ++T+  +    G    +  + L++ A   D  R
Sbjct: 118 MAEITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGDKLEISAA--DFQR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A + V    + +    I +PRK V E+L+IL  +D  V++     +I   I  + +  +
Sbjct: 176 IATSSVKFDEEYSNEFMINIPRKTVMELLKIL-DEDEYVEIETDRKQIIFTIGQVKIFSK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+    +   +       + ++N       + RVS ++S     V LS       +   
Sbjct: 235 LIEKYIKSITKLFANDLPLQAKLNRAEFLDVIKRVSAITSEVTHGVVLSFKPGTFTVYSL 294

Query: 301 NPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSD 339
             + G   ES++ + YN  P+DI FN K++ E+I NI +D
Sbjct: 295 ETEYGTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTD 334


>gi|317050201|ref|YP_004111317.1| DNA polymerase III subunit beta [Desulfurispirillum indicum S5]
 gi|316945285|gb|ADU64761.1| DNA polymerase III, beta subunit [Desulfurispirillum indicum S5]
          Length = 368

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 96/386 (24%), Positives = 186/386 (48%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+  +E+ D+ + L  A  I   KN T  +  ++ ++A   L+ I ++   I +T  I A
Sbjct: 1   MRFEIEKKDLEKTLFKAHGICNSKNITNNILTNIQIKAESDLIRINSTDRNISLTSTISA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   GS+ V+    Y+ +++L +   I    +N L     I+   + F L +   + FP
Sbjct: 61  NIQETGSVLVNGKKFYEAIKELPNNIVIIERVDNTL----TIACQKTQFKLFTSDPTLFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +       + +  L++++ +T F     + ++ +NG    +  +  K+  VATDGH
Sbjct: 117 ELDLQLGESPVVIPALKLRDILIKTFFCSTETQTKFGVNGTLLKL--QGNKITTVATDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL ++ +    Q +    +++PR ++ EI+++L+  D  +KV + E+ I    +  ++  
Sbjct: 175 RLGLSAISTDQQYSDN-EVVIPRNSLNEIVKVLTDVDEDIKVHIDENAIVFATQQDTIKT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+  +FP Y  VIP      L+++   +++ + R+SI  +  ++ VK S+    L  T+
Sbjct: 234 NLLKKKFPPYGKVIPDECPVSLQISTKKIKETLKRLSIFVNENVKIVKFSVEDKILVATI 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + + G A E + + Y     +I +N +   EII++I S     +     L+ S S   I
Sbjct: 294 QSQEHGNAREVIEIEYEGNNFEIGYNVRLFNEIINHIES-----ETFTLALNESLSVSVI 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  D    N KD +    YVLMP R+
Sbjct: 349 RPGD----NKKDEQ--TLYVLMPNRL 368


>gi|118468117|ref|YP_884424.1| DNA polymerase III subunit beta [Mycobacterium smegmatis str. MC2
           155]
 gi|1706495|sp|P52851|DPO3B_MYCSM RecName: Full=DNA polymerase III subunit beta
 gi|1321894|emb|CAA63249.1| dnaN [Mycobacterium smegmatis]
 gi|118169404|gb|ABK70300.1| DNA polymerase III, beta subunit [Mycobacterium smegmatis str. MC2
           155]
          Length = 397

 Score =  121 bits (304), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 103/407 (25%), Positives = 185/407 (45%), Gaps = 44/407 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R D  + +    R +  + TIPV   VLL   D  L I  SG + E++  +  S
Sbjct: 11  LKFRVVREDFADAVAWVARSLPTRPTIPVLAGVLLTGTDEGLTI--SGFDYEVSAEVKVS 68

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115
            ++   GS+ VS  LL DI + L         K  E+   GT V+++ G + F L +   
Sbjct: 69  AEIASAGSVLVSGRLLSDITKALP-------AKPVEVSVEGTRVSLTCGSARFSLPTLAV 121

Query: 116 SEF---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            ++   P+  EE  V    +AS +    + +   A   ++    L GI   I+ E + L 
Sbjct: 122 EDYPALPALPEETGV----IASDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGESVVLA 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS------- 224
             ATD  RLAV E+  V     +  +++VP K + E  +   +  + V ++L        
Sbjct: 178 --ATDRFRLAVRELTWVTTAGDVEAAVLVPAKTLAEAAKA-GTDGNQVHLALGSGASVGK 234

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           +  + +  E    + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R  
Sbjct: 235 DGLLGIRSEGKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVAD-RGA 293

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            +++  S D L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     +
Sbjct: 294 QIRMEFSDDTLKLSAGADDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLGSLHS-----E 348

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            V F   + +    +R   +D   N  +      K +  Y+LMP+R+
Sbjct: 349 RVTFGFTTPSRPAVLRPAGEDDGANGGSGPFPAAKTDYVYLLMPVRL 395


>gi|78211559|ref|YP_380338.1| DNA polymerase III subunit beta [Synechococcus sp. CC9605]
 gi|78196018|gb|ABB33783.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9605]
          Length = 385

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 193/401 (48%), Gaps = 34/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKVVCSQSELNGALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV++ G+IT+ A LL +IV +L   + ++   ++  G +V ++    ++ ++     ++
Sbjct: 61  ASVEISGAITLPARLLGEIVSRLSSDSPVTLAVDDS-GEQVQLTSLSGSYQMRGMSADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L    L   ++ T FA + +E +  L G+    N+  L+  A ATDG
Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSESR--- 227
           HRLAV  V+   Q   +         ++ +P +++ E+ R+++S  S   VSL   R   
Sbjct: 178 HRLAVLNVEDALQDEAVTDAVDDDGFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           + L  + +  S R ++G +PNY  +IP    +   ++   L  A++R+++++      VK
Sbjct: 238 VFLAADQMVTS-RTLEGTYPNYGQLIPDGFARTFGMDRRALIAALERIAVLADQHNNVVK 296

Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            S   +   + ++ D  D+G   ES+        M I FN +YLL+ +  + S     D 
Sbjct: 297 FSSQPEDGVVQISADAQDVGSGSESLPANLEGDAMQIAFNVRYLLDGLKAMGS-----DR 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
           +V   ++  +   +R          D+   AF Y++MP++I
Sbjct: 352 IVLHCNAPTTPAVLR---------SDDASEAFTYLVMPVQI 383


>gi|254526327|ref|ZP_05138379.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT
           9202]
 gi|221537751|gb|EEE40204.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT
           9202]
          Length = 385

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 180/356 (50%), Gaps = 17/356 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A++G  +I  +G ++   I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL     +S  + +E    + I     +F L+  P  E+
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPTETPVSL-EVDEDSDNILIKSDRGSFTLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +     I             S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGNEEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K L  N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297

Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + L  +D   ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S+ V+
Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353


>gi|299143461|ref|ZP_07036541.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517946|gb|EFI41685.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 364

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 105/388 (27%), Positives = 195/388 (50%), Gaps = 29/388 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +ER ++   +    + I  + T+ +   +L+ A D LL + AS  EI I   +PA 
Sbjct: 1   MKIRIERKELSRHISIVQKAISSRTTMQILEGILIIAKDNLLTLIASDTEISIKTTLPAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I V++ L  DI+RKLQ    I  F+ N+  T +NI    S F +Q     EFP 
Sbjct: 61  ISDEGKIVVNSRLFGDIIRKLQ--GDIIDFEINQ--TNMNIKCLKSEFNIQCQVPDEFPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   + +L SS  K  + +T FA++ +E R    G+   I  +  K+  VA DG R
Sbjct: 117 LPRVDENLTIKLKSSDFKEAIRKTSFAVSFDETRVAFTGVLMDIKNK--KINFVALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+  +D   +  +  S I+P +++ E+++I+ +++  V +++  + +  +++       
Sbjct: 175 MALKSLD--TECEENISAIIPARSLNELVKIIENEE-YVNLTIGRNSLKFDLDKTIFYTT 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCT--NLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297
           L+ GEF  Y+ +I   ND+ + V     +L+ +++R ++++   +   VKL +   ++ +
Sbjct: 232 LLSGEFFKYEGLI--KNDQSIIVEVLKHDLQSSLERATLLAKEDKANLVKLDMKDSEIEI 289

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T  N ++G   ES++   +   + I FN KYLLE +  I S++V     +   DS N  +
Sbjct: 290 T-SNSEIGNVEESVDAKISGENLKIAFNSKYLLEGVRIIESEKV----TLNFTDSINPCI 344

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DKD            Y+++P+R+
Sbjct: 345 IREEDDKD----------YIYLVLPVRL 362


>gi|148283999|ref|YP_001248089.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str.
           Boryong]
 gi|146739438|emb|CAM79068.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Boryong]
 gi|267847155|gb|ACY80718.1| chromosomal replication initiation protein [Orientia tsutsugamushi
           str. Boryong]
 gi|267847157|gb|ACY80719.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
 gi|267847169|gb|ACY80725.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  121 bits (303), Expect = 2e-25,   Method: Compositional matrix adjust.
 Identities = 107/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58
           I ++  +   +L     I+E+KN   +  +V L   ND +   LEI A+  +I I   +P
Sbjct: 20  IKLDTKNFSRVLNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79

Query: 59  ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
             +     SIT+    L +IV+K+  D   I   ++N++   V I  G+   F L + P 
Sbjct: 80  IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKGGEYLEFNLATLPI 136

Query: 116 SEFPSTKEEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173
           + FP  +E   V +   + +  L  ++E T FA++TEE RY LNGI+ H   +D K L A
Sbjct: 137 NLFPVIEELTDVDFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225
           VATDGHRLA A+ +I      + +     +I+PRK + E+ +I    S    +V + +  
Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           ++I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L +++DRVS ++  + + 
Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIDRVSTIAVEKSKI 314

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324
           V L L    + +        KA E +                       Y  +  + I F
Sbjct: 315 VILDLDHHAITIRAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAF 374

Query: 325 NYKYLLEII 333
           N KYLL+++
Sbjct: 375 NAKYLLDVL 383


>gi|78778386|ref|YP_396498.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9312]
 gi|78711885|gb|ABB49062.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT
           9312]
          Length = 385

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 182/356 (51%), Gaps = 17/356 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A+ G  +I  +G ++   I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISLTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL + + +S   +  L   + I     +F L+  P  ++
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPNESPVSLEVDENLD-NILIKSDRGSFNLKGIPSDDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F   +  L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKATIFATSNDDSKQLLTGVNFTFKQNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIA---KMPSI------IVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +     I    K PSI       +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGNEEHIENKDKSPSIEDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP +  K    N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGAYPNYSQLIPDTFSKIFNFNTKKLIDALERIAVLADQQSSVVK 297

Query: 288 LSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + L ++D   ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S  V+
Sbjct: 298 IKLDNTDLASISADAQDIGNANESIPVSYSGEDFDIAFNVRYLLEGLKVIASKNVL 353


>gi|225012856|ref|ZP_03703289.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A]
 gi|225002978|gb|EEG40955.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A]
          Length = 372

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 86/344 (25%), Positives = 168/344 (48%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L + N   L + AS  E   +  I   
Sbjct: 1   MKFIVSSAALLKELQMLGGVINSTNTLPILDNFLFEINGNSLTLTASDLETTFSTRIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
            +    + + A LL D ++   +   ++F K  +   E++ ++G    Y  ++ E +EFP
Sbjct: 61  SESNSMVALPARLLLDTLKTFPE-QPLTFIKTEKNTVEISANNGK---YAVAYVEGNEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +  + S +L   +  T FA   +++R  ++G+FF  + E L    VATD H
Sbjct: 117 KAAQVNDAKTTLIQSDILYTAINSTLFASGNDDLRPVMSGVFFQFSTESLTF--VATDAH 174

Query: 180 RLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +L      D+ A        I+P+K +  +  IL    S + +  +++         +++
Sbjct: 175 KLVKYTRSDVTA--TDTSEFIMPKKPLQLLKGILQGSISEISIEYNDTNAQFRFGDSALT 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY+ VIP  N  +++V+  +   +V RVSI S+     ++L ++   L ++
Sbjct: 233 CRLIDGKYPNYEAVIPKENPNQMQVSRVSFLNSVRRVSIFSNKTTHQIRLKIAGAALQIS 292

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ D    A E ++  Y    + I FN ++L+E+++N+  D++
Sbjct: 293 AEDFDYSNSAEERLDCDYQGDDIQIGFNSRFLIEMLNNMECDQI 336


>gi|297621406|ref|YP_003709543.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044]
 gi|297376707|gb|ADI38537.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044]
          Length = 373

 Score =  120 bits (302), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 97/385 (25%), Positives = 178/385 (46%), Gaps = 17/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   +   L+     ++    T+PV  ++L++A +G L + A+   + +     A 
Sbjct: 1   MKFVISTQEFNYLISKCQHVVPPNPTMPVLSNILIEAKNGELILTATDLTVGVRCFTEAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T+    L  ++R+L          EN +     I    S F L       +P 
Sbjct: 61  VLEEGSTTLPVKKLASLIRELTSMNVEVTTSENHV---TEIISDTSKFKLNGMAGGNYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     +L    LK +  RT FA++ ++ RY L G+F HI  E+ + C V TDG R
Sbjct: 118 LPSFADATPIKLTQQQLKEMFFRTSFAVSKDDTRYALTGVFLHI--ENGRACFVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA   +D+    +     IVP KAV EIL+ L  ++    + L   +I +  E+     +
Sbjct: 176 LARTRLDLEIDPSFSGGYIVPIKAVDEILKNLK-EEGDATLYLLNDKIAVETENSLHVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ G++P+   VIP  + + L ++   L   + +VS+ ++    +V+ S  + ++ ++ +
Sbjct: 235 LLSGDYPDVNRVIPDRSGQSLTLHREELLTLLRQVSLFTAEGYHSVRFSFGNGEVKLSAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G+   SM V Y+   +DI F+  + ++I+ +   + V     +   DS N  V   
Sbjct: 295 TKDVGEGNVSMPVNYHADQIDIAFDPTFFMDILKHTRGERV----TLGVTDSFNPGVIT- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D++   ++  +  +VLMPMR+
Sbjct: 350 ----DTEEGTED--SPLFVLMPMRL 368


>gi|227893837|ref|ZP_04011642.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047]
 gi|227864326|gb|EEJ71747.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047]
          Length = 378

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 96/356 (26%), Positives = 164/356 (46%), Gaps = 21/356 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 3   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 62

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T+  I   +S F +     +
Sbjct: 63  EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQ--IVSENSEFTINGLDAN 119

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F    + +K  AVAT
Sbjct: 120 NYPRLPEIPDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 178 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKVCPGDNQALFIIGNLS 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  +   L  A++R S+++   R   V L+L  +K 
Sbjct: 238 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVEKQ 297

Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344
              +     GK+ E  NV     + N     ++I FN  Y+ + +    +D V+ D
Sbjct: 298 TAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVIMD 349


>gi|119509171|ref|ZP_01628322.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414]
 gi|119466337|gb|EAW47223.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414]
          Length = 387

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 182/362 (50%), Gaps = 28/362 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+    ++  +  ++   I  +  
Sbjct: 1   MKLVCTQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAKTNQVSLTAFDLSLGIRTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--------DSNFYL 110
           A V   G+I + A LL DI  +L +G +++   E+ L +E     G          ++ +
Sbjct: 61  AEVLEGGAIALPAKLLVDITSRLPEG-EVTLDDESALESETATGEGLIVTLTPKSGHYQV 119

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           ++    EFP     E     +L ++ L   +  + FA + +E +  L G+   + ++ L+
Sbjct: 120 RAMSAEEFPELPIIENAEPIQLTTAALIEGLRGSLFATSGDETKQVLTGVHLTVRQDTLE 179

Query: 171 LCAVATDGHRLAVAE------VDIVAQIAKMPSIIVPRKAVGEILRIL---SSKDSSVKV 221
             A  TDGHRLAV E      +D   Q+     + VP +A+ E+ R+L   ++ D ++ +
Sbjct: 180 FAA--TDGHRLAVLETTNERPLDNSEQL----EVTVPARALRELQRMLGHNAASDQAIAL 233

Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
            L + ++    ++  ++ R +DG++P Y+ +IP   +++L +    L   ++R+++++  
Sbjct: 234 YLDQGQVVFAWQNQRLTSRTLDGQYPAYRQLIPRQFERQLTIERKQLISTLERIAVLADQ 293

Query: 282 RIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           +   VK+S+  +S ++ ++ +  D+G   ES+    +   ++I FN KYL+E +  + S 
Sbjct: 294 KNNIVKVSINSASQEITLSCEAQDVGSGRESIPAQISGEDIEIAFNIKYLMEGLKELPSS 353

Query: 340 EV 341
           E+
Sbjct: 354 EI 355


>gi|51244500|ref|YP_064384.1| DNA polymerase III, beta chain [Desulfotalea psychrophila LSv54]
 gi|50875537|emb|CAG35377.1| probable DNA polymerase III, beta chain [Desulfotalea psychrophila
           LSv54]
          Length = 376

 Score =  120 bits (301), Expect = 3e-25,   Method: Compositional matrix adjust.
 Identities = 104/398 (26%), Positives = 195/398 (48%), Gaps = 37/398 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ TV + D+LE LG    I  +  T+ +  +VL++ ++G L + A+  EI +   I A 
Sbjct: 3   LQCTVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIKAE 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+T+ +  +++IVR  + G++    +E E  + V I  G S + L      E+P 
Sbjct: 63  IHGEGSLTLPSKKIFEIVR--ESGSEKISIEEKE-NSWVVIKAGQSTYNLAGMASDEYPE 119

Query: 121 TKE--EEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLK--LCAVA 175
             E  E+    FE  S + + L+E+  F++A E E  Y L  I F   +E  K  L  ++
Sbjct: 120 FPEYDEDSFTVFE--SYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMIS 177

Query: 176 TDGHRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           +DGHRL++   ++   +      P  ++P+K V E  +   +KD S++VS    ++ L  
Sbjct: 178 SDGHRLSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKD-SIEVSFEHDKLILRN 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ-----AVDRVSIMSSVRIQAVK 287
               M V L  GEFP Y+ ++    D     NC  + +     ++ R+++ +      ++
Sbjct: 237 NQDVMVVSLKTGEFPQYKAIV----DAVQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQ 292

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L++  D + ++  N D+G A +   + Y+  P+ + FN +Y    ID + + E   +++ 
Sbjct: 293 LAIDKDFMVLSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYF---IDTLQAMEC--EKIK 347

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++SSNS   I         N D+      ++MPM++
Sbjct: 348 AYINSSNSPCLI---------NSDDDPGFTSIIMPMQL 376


>gi|291294406|ref|YP_003505804.1| DNA polymerase III subunit beta [Meiothermus ruber DSM 1279]
 gi|290469365|gb|ADD26784.1| DNA polymerase III, beta subunit [Meiothermus ruber DSM 1279]
          Length = 361

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 88/342 (25%), Positives = 169/342 (49%), Gaps = 21/342 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  + E L    RII  +++ P+  ++ ++ +D  L ++ +  E++I   +PA 
Sbjct: 1   MEVRIPKRTLAEGLSILERIIPSRSSNPILTYLPMELSDQGLILRGTNGEVDIEVKLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-----FPE 115
           V   G + V A     IVR          F   E    + +  G  N  L +     +PE
Sbjct: 61  VQGTGQVLVPAQTFVQIVRSAPGELVELIFGGKE---RLELHSGAFNTQLATTGPDGYPE 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
             F     E+      +A+S L   + R  +A +TEE R    G+   ++   L+  AVA
Sbjct: 118 LSFGPPGPEK------IAASRLAQAITRVRYAASTEEFRAIFRGVQIEMSPTSLR--AVA 169

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           +DG+RLA  ++ +  Q  K+   ++P ++  EI+R+       V ++++E  + L  E++
Sbjct: 170 SDGYRLACYDLPMQLQTRKL---VIPARSADEIVRVFKDAQGEVALAVAEGTLTLVGEAV 226

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            MSV+L++GEFP+Y  VIP S   E  +    LR+++ RV+++S      V L  + +KL
Sbjct: 227 RMSVKLMEGEFPDYGRVIPQSFVLEATLQAEALRESLKRVAVLSDRNNHRVNLLFNHNKL 286

Query: 296 CMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNI 336
            +  +  D G+  E + +  +  P + + +N ++L++ +  I
Sbjct: 287 DIDAEG-DYGRGREELGIEASGEPQLMVAYNAQFLIDALAPI 327


>gi|299140891|ref|ZP_07034029.1| DNA polymerase III, beta subunit [Prevotella oris C735]
 gi|298577857|gb|EFI49725.1| DNA polymerase III, beta subunit [Prevotella oris C735]
          Length = 373

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 108/388 (27%), Positives = 188/388 (48%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  S +   L    ++I  KN++P+    L + ++  L+I AS  E  +T  +  S
Sbjct: 1   MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE-LGTEVNISHGDSNFYLQSFPESEF 118
             D  GS  V    + D V++L +   +SF  + E L  ++   +G  NF  Q+    E+
Sbjct: 61  ECDGEGSFAVPNRTILDAVKELPE-QPLSFDVDIEALTIKILYQNGMYNFTAQN--ADEY 117

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P T+   +      + S+ L + + R+ FA AT+E+R  +NGI+F +  +   L  VATD
Sbjct: 118 PHTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GH+L V   D   +     S I+P+K    +  +LS  D+ V +   +    +      +
Sbjct: 176 GHKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  + + KL +
Sbjct: 235 TCRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEV 293

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSNS 355
           + ++ D    A E +   YN   M I F    L +I++N+       DEV+F+L D S +
Sbjct: 294 SSEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDG-----DEVIFQLADPSRA 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            V +  +  ++        N   ++MPM
Sbjct: 349 GVIVPAQQPEN-------ANILMLIMPM 369


>gi|307152245|ref|YP_003887629.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822]
 gi|306982473|gb|ADN14354.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822]
          Length = 393

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/364 (27%), Positives = 178/364 (48%), Gaps = 26/364 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK T  +SD+   L      +  + T P+  +VL  A+   GL+ + A    + I  +  
Sbjct: 1   MKFTCSQSDLNANLSLVRSAVPNRPTHPILGNVLFVADTEKGLISLTAFDLSLGIRTSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-----FKENELGTEVNISHGDSNFYLQSF 113
           A+V+  GSIT++A LL DIV +L +G +I+          E  ++V I      F L+  
Sbjct: 61  ANVEEDGSITLAAKLLNDIVSRLPEG-EITITLEEEDDGEEEQSKVTIESVSGRFQLRGM 119

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              +FP     E V    L  S L   +  + FA +T+E +  L G+     ++ L+  A
Sbjct: 120 KADDFPELPTIENVEPVRLPVSALTEGLRGSLFAASTDETKQVLTGVHLSGLQDSLEFAA 179

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS------------IIVPRKAVGEILRILSSKDSSVKV 221
             TDGHRLAV +        +  S            I +P KA+ E+ RI++    +  V
Sbjct: 180 --TDGHRLAVVQTPTQQTTEEEDSTPQPESNLEGFAITIPAKALRELERIMTMHKETEAV 237

Query: 222 SL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +L   E+++   + S  ++ R ++G +PNY+ +IP    +   +    L  +++RV++++
Sbjct: 238 ALYVDEAQVIFELGSQRLTSRKLEGAYPNYEQLIPHQFSRSATLERKRLLSSLERVALLA 297

Query: 280 SVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
             +   VK +L+ +K  L ++V++ D+G A ESM+   +    +I FN KYL++ +  + 
Sbjct: 298 DQKNNLVKFTLAEEKGQLILSVESQDLGSARESMDAQISGESGEIAFNVKYLMDGLKALG 357

Query: 338 SDEV 341
           + E+
Sbjct: 358 AAEI 361


>gi|15638997|ref|NP_218443.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025238|ref|YP_001933010.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp.
           pallidum SS14]
 gi|4033379|sp|O83048|DPO3B_TREPA RecName: Full=DNA polymerase III subunit beta
 gi|3322257|gb|AAC65000.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017813|gb|ACD70431.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059422|gb|ADD72157.1| DNA polymerase III, beta subunit [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 371

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 99/349 (28%), Positives = 168/349 (48%), Gaps = 17/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  E+   L+ +  A  +I  K    +  +VLL A   LL I+A+  ++    +IP +
Sbjct: 1   MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+ TV    L ++V  L     +++  +E  + T  N      +F L++     FP
Sbjct: 61  VLAEGTTTVFCDKLVNVVSALPTKEIELTLCEEQLVITPPN---KKISFQLRTLSHESFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   S  + +S L+N++  T FA++ +  R+++NG+  H++ +   +  V+TDG 
Sbjct: 118 CFPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGV--HVDFQYGNIICVSTDGK 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  E    +       +IVP K +G + R L+  + SV + ++   ++        S 
Sbjct: 176 RLAYIEKKGESSPQSFSGVIVPTKILGIVNRKLTP-EGSVTLCITSQHVYFFFGGYKFSS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-------VRIQAVKLSLSS 292
            LI+G+FPNY+ VIP   ++   V    L +A+ RVS++         + IQ   L+LSS
Sbjct: 235 VLIEGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSS 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                T +N ++G A E +   Y      I  NY YL E +   +S EV
Sbjct: 295 K--AHTQEN-EIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSKEV 340


>gi|183219429|ref|YP_001837425.1| DNA polymerase IIIsubunit beta [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909575|ref|YP_001961130.1| DNA-directed DNA polymerase subunit beta [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774251|gb|ABZ92552.1| DNA-directed DNA polymerase, beta subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777851|gb|ABZ96149.1| DNA polymerase III, beta chain [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 372

 Score =  120 bits (301), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 89/389 (22%), Positives = 179/389 (46%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV  ++ L+ +     +I  +       ++ +Q  +  + + A+  EI I  ++P++
Sbjct: 1   MKFTVNTTEFLKAINSVDGVISVREIKSALSNLKIQTGENEVYLSATDLEIAIKTSVPST 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG----DSNFYLQSFPES 116
           +   G+ ++ A  L  I + L     +    EN   +E  I+      D+ F +      
Sbjct: 61  IGEKGTASLPAKQLSSIFKNLNFDTSLLTTTENSENSETTITDASGKMDTKFKVNGIDSE 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +  +  + +     E     ++ +  +T +AMA EE R+  NG+F   +  DL    V T
Sbjct: 121 DIKTIPKVDEASVVEFPCQTIREMFRKTSYAMAIEETRFVFNGLFLKPDNTDL--IVVGT 178

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG RL+        Q      +I+P KAV E+L+++  K+++ K+   E +I+++  ++ 
Sbjct: 179 DGRRLSKIVRKFPKQFPFKNGVIIPHKAVREMLKMMEGKETA-KIGFVEEQIYVSSGNVE 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +LIDG FP+Y+ VIP    + +RV   +    + +  I +    + ++L+ S   + 
Sbjct: 238 LLFKLIDGNFPDYEQVIPKQTTESVRVVKADFLTFLKQALISAEEPSKQIRLAFSKGNVN 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP       +M + YN   + I F   YL +++  +      D EV+    +S++ 
Sbjct: 298 ISSSNPGTMMFDHNMPIEYNGETITIAFKGDYLSDVVKAVD-----DPEVILEFTTSSAP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V      KD  ++     +   V+MPM++
Sbjct: 353 VLF----KDPSDS-----DFVSVIMPMKL 372


>gi|157412339|ref|YP_001483205.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9215]
 gi|157386914|gb|ABV49619.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9215]
          Length = 385

 Score =  120 bits (300), Expect = 4e-25,   Method: Compositional matrix adjust.
 Identities = 94/356 (26%), Positives = 177/356 (49%), Gaps = 17/356 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           M+I   +++    +    + +  + T P+  ++LL A++G  +I  +G ++   I  +  
Sbjct: 1   MEIICNQNEFNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL     +S    +E    + I     +F L+  P  E+
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPTETPVSL-AVDEDSDNILIKSDRGSFTLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +     I             S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGNKEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K L  N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297

Query: 288 LSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + L    L  ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S+ V+
Sbjct: 298 IKLDDKDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIASENVL 353


>gi|148238337|ref|YP_001223724.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7803]
 gi|147846876|emb|CAK22427.1| DNA polymerase III beta subunit [Synechococcus sp. WH 7803]
          Length = 389

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 88/360 (24%), Positives = 180/360 (50%), Gaps = 21/360 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++P
Sbjct: 1   MKLVCSQTELNSALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASVD  G++T+ A L  +IV +L   + I+   ++  G +V ++    ++ ++  P  +F
Sbjct: 61  ASVDTSGAVTLPARLFGEIVSRLSSDSPITLTTDDS-GEQVELTSLSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   +  T FA +++E +  L G+  H+  +  +L A +TDG
Sbjct: 120 PDLPLVENGTAVKLDPAALVRALRSTLFASSSDEAKQLLTGV--HLRFDQTRLEAASTDG 177

Query: 179 HRLAVAEVDIVAQIA----KMP--------SIIVPRKAVGEILRILSSKDSSVKVSLSES 226
           HRLAV  VD   Q A    + P        ++ +P +++ E+ R+++    S  VSL   
Sbjct: 178 HRLAVLSVDDALQDAIANEEAPDAEGSAGLAVTLPARSLREVERLMAGWKGSDPVSLFFE 237

Query: 227 RIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           R  + + +    V  R ++G +PNY+ +IP S  + + ++      +++R+++++     
Sbjct: 238 RGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTMALDRRAFVASLERIAVLADQHNN 297

Query: 285 AVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            V++     K  + ++ D  D+G   ES+        + I FN +Y+L+ +  + ++ +V
Sbjct: 298 VVRIISDPSKGLIQISADAQDVGSGSESLPAQIEGEEVQIAFNVRYVLDGLKAMDAERIV 357


>gi|328956384|ref|YP_004373770.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4]
 gi|328672708|gb|AEB28754.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4]
          Length = 380

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 89/342 (26%), Positives = 177/342 (51%), Gaps = 19/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++RS  L+ L    R I  + TIP+   + + AND  L +  S  +I I   IP S
Sbjct: 1   MKFTIKRSAFLKSLSDVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++  G I + A    +IV+KL ++   I          +  I+   ++F +  
Sbjct: 61  EDDNLLVIEKTGGIVLQARFFSEIVKKLPEETMTIEILDH----FQALITSATASFTING 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              + +P     +   SF L  ++ K ++ +T  A++T E R  L G+  +I  E+ K  
Sbjct: 117 LDPNNYPHLPIIDTKESFTLPVNLFKQVIGQTVIAISTHESRPILTGV--NIVIENGKFL 174

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           AVATD HRL+   + +     Q +K  +II+P K++ E+ R L     ++++ ++E+++ 
Sbjct: 175 AVATDSHRLSQRVIPLEMNDEQASKKYNIIIPGKSLIELSRTLDENSDTIEMMITENQVL 234

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E++    RL++G +P+ + +IP ++  E+  N ++L  +++R S++S   +   VK+
Sbjct: 235 FKSENMYFYSRLLEGYYPDTKRLIPDNSSTEISFNASSLLGSIERASLLSHEGKNNVVKI 294

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
           +++ + + ++ ++PD+G   E ++    E  P+++ FN  Y+
Sbjct: 295 TINPNLVEISGNSPDVGNVNEELDYQSVEGEPIELSFNPDYM 336


>gi|30171300|gb|AAP20074.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|30171304|gb|AAP20076.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 217

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 119/192 (61%), Gaps = 12/192 (6%)

Query: 65  GSITVSAHLLYDIVR---KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           GSITVS   L +I R   +L D  +IS  KE     +++IS  +SN+ L + P   FP+ 
Sbjct: 22  GSITVSGQKLLNICRNSSELSD-IKISLNKE-----KIHISLENSNYILNTLPAENFPNH 75

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              ++V  F ++S +LK ++E+THF+M  +++RYYLNG+    N+    L  VATDG+RL
Sbjct: 76  NNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLEKNKTS--LYTVATDGYRL 133

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
            +A+  +   +  + S I+PRK + E+ ++L+ +   + V + ++ I + IE L  +V+L
Sbjct: 134 GIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLIFTVQL 192

Query: 242 IDGEFPNYQNVI 253
           I+GE+P+Y++++
Sbjct: 193 IEGEYPDYKSIL 204


>gi|332709092|ref|ZP_08429061.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L]
 gi|332352143|gb|EGJ31714.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L]
          Length = 393

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 103/410 (25%), Positives = 201/410 (49%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA---NDGLLEIKASGPEIEITGAI 57
           MK+   +SD+   L    R++  + T PV  +VLL+A   N  +L + A    + I  + 
Sbjct: 1   MKLVCSQSDLNTNLSLVSRVVPSRPTHPVLGNVLLEADQKNQRVL-LTAFDLSVGIQTSF 59

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-----VNISHGDSNFYLQS 112
            A V+  G IT+ A LL DIV +L  G +I+  +++  GT+     V ++     + ++ 
Sbjct: 60  NADVETGGEITLPAKLLNDIVSRLPSG-EITL-EDDGTGTDSDSLIVTLTSATGRYQVRG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP   E     +  +   VLK  ++ + FA +++E +  L G+  H+  +  KL 
Sbjct: 118 MSSEEFPELPEVNTSVAVHIPVEVLKAGLQGSLFATSSDETKQVLTGV--HLTVQSDKLE 175

Query: 173 AVATDGHRLAVAEVD-IVAQIAKMPS------------IIVPRKAVGEILRILSSKDSS- 218
             ATDGHRLAV E +  + + A   +              +P +A+ E+ RI+S  ++  
Sbjct: 176 FAATDGHRLAVVETNRTIEESATTEATQELDDHDFPLEFTLPARALRELERIVSKAEAQD 235

Query: 219 -VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
            + +     +I        ++ R ++G++P+Y  ++P   +++L ++   L  AV+R+++
Sbjct: 236 IIAIQFEPGQIVCQGGEQLLTSRTLEGQYPSYHQLLPKHFERQLILDRRQLLSAVERIAV 295

Query: 278 MSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           ++  +   VK ++ S   +L ++V+  D+G   ESM V  +   ++I FN KYL++ +  
Sbjct: 296 LADQKNNIVKFNIDSVNQRLHLSVEAKDLGSGRESMEVEISGDSLEIAFNVKYLIDGLKA 355

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S+      E+  +++ +NS V                +   Y++MP++I
Sbjct: 356 LST-----SEIKMQMNEANSPVIFMPL---------GGLKMTYLIMPVQI 391


>gi|221194950|ref|ZP_03568006.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626]
 gi|221184853|gb|EEE17244.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626]
          Length = 366

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 96/387 (24%), Positives = 192/387 (49%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  TV +S +   L    + I    ++P+   V L+A +G LEI+++   + I   + A+
Sbjct: 1   MNFTVSQSSLQTALDIVMKGIGSNPSLPILSGVYLKAQEGTLEIQSNDLTVSIKHKVAAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   VSA +L  IV+ L D A I+F  E+E    + ++   S ++L   P +++P+
Sbjct: 61  VEEEGETVVSAKVLQTIVKNLPDAA-ITFKYEDE---GIKLTCQKSTYHLTVLPVADWPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S EL S++L  +V++ +  ++ +  R  L GIF    E  ++L  VATD  R
Sbjct: 117 FPEVVPEKSIELPSALLSKMVDKIYRVVSHDVSRPILQGIFLTAEENTIRL--VATDSFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV +        +    I+  +A+  +L  + +   ++ V +S++++     + +   R
Sbjct: 175 LAVCDTHTDTPTGEKFEAIISGEAIHNVLS-MRTMTETIMVGISDNQVVFTFGNTTHVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLCMT 298
            I+G +P+Y+ ++  S    + +       A+  VS++ +++  AV+L + ++  ++C +
Sbjct: 234 KIEGNYPDYKKLLAPSCSTAITLPIEETSAAIKHVSVV-ALQNFAVRLDIDAEGGEICFS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G A E++        + I FNY+Y+ + ++ +S  + V  E+   L  +  +VF
Sbjct: 293 SSSPDQGNASETIKADVEGKSLTIGFNYQYVFDCLNALSEQKSVRFEL---LSETQPAVF 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                         K+N  Y+L+P+ +
Sbjct: 350 ----------KASGKINYLYLLIPVHL 366


>gi|330898607|gb|EGH30026.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 195

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 66/209 (31%), Positives = 120/209 (57%), Gaps = 14/209 (6%)

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       +
Sbjct: 1   DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 60

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 61  FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 120

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 121 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 175

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 176 ALVQESDND---------DSAYVVMPMRL 195


>gi|116514953|ref|YP_802582.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256807|gb|ABJ90489.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 368

 Score =  120 bits (300), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 188/391 (48%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++++D         RII +    P+  +++++ N+  L++ +S  E+E+   I   
Sbjct: 1   MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G + +S   + +I R +   A + F     +  ++ I   +S F L +   + 
Sbjct: 61  FFILYKSGCVAISGKKILNICRNISKDAILHF---KIINKKMRICILNSLFELNTMICTN 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   +      F ++  +LK ++    F++A  +IR  LNGI     + +L    V TD
Sbjct: 118 FPIFNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNNL--YGVTTD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G+RL+V ++ I   I    SII+ +K++ E+ R+++  +  VKV ++ + +   I  + +
Sbjct: 176 GYRLSVYKIAINLNIKNF-SIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG FPNY +VI       + +    L++++ + SI+ +   + V L+   +KL +
Sbjct: 235 KTKILDGNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLII 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV---FRLDSSN 354
           T  N +  K+ +S  +   +  +    N  YLL+I++      V+D EV+   FR+  S+
Sbjct: 295 TSKNQEDEKSYDSFIIDNKKIKISFHINVFYLLDILN------VLDVEVITISFRIPISS 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +             D K    Y++MP+++
Sbjct: 349 IQI-----------QSDKKKEILYIIMPLKL 368


>gi|150387855|ref|YP_001317904.1| DNA polymerase III subunit beta [Alkaliphilus metalliredigens QYMF]
 gi|149947717|gb|ABR46245.1| DNA polymerase III, beta subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 368

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 169/336 (50%), Gaps = 18/336 (5%)

Query: 14  LGHACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69
           L H+  I+++    K T+P+   + ++ N+  L +  +  EI I   + A V   G + V
Sbjct: 10  LMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEHVMEADVLQEGIVVV 69

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK--EEEYV 127
            A L  +I+RKL D       KEN    ++ I    + F +  +   EFP     EE+ V
Sbjct: 70  DARLFSEIIRKLPDAEVDITLKEN---NQLEIKCASTEFNILVYSPDEFPELPIVEEDQV 126

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
           Y  E+A  + K ++ +T FA + +E R  L G+   I E  L +  VA DG+RLA+ +  
Sbjct: 127 Y--EIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEENTLNM--VALDGYRLALRKGK 182

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
           I         ++VP K + E+ RIL+  ++  + ++L+ +          +  RL++GEF
Sbjct: 183 ISGN--SNHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLISRLLEGEF 240

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMG 305
            NY+ ++P  +  ++ +    +  +++R S+++   R   V+  ++ +K+ +T  N ++G
Sbjct: 241 INYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVIT-SNSELG 299

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           K  E +N+      ++I FN KY ++ +  I  +EV
Sbjct: 300 KVHEEINIVLEGEDIEIAFNSKYFIDALKVIDDEEV 335


>gi|30171298|gb|AAP20073.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|30171302|gb|AAP20075.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 200

 Score =  119 bits (299), Expect = 5e-25,   Method: Compositional matrix adjust.
 Identities = 68/192 (35%), Positives = 119/192 (61%), Gaps = 12/192 (6%)

Query: 65  GSITVSAHLLYDIVR---KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           GSITVS   L +I R   +L D  +IS  KE     +++IS  +SN+ L + P   FP+ 
Sbjct: 17  GSITVSGQKLLNICRNSSELSD-IKISLNKE-----KIHISLENSNYILNTLPAENFPNH 70

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              ++V  F ++S +LK ++E+THF+M  +++RYYLNG+    N+    L  VATDG+RL
Sbjct: 71  NNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLEKNKTS--LYTVATDGYRL 128

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
            +A+  +   +  + S I+PRK + E+ ++L+ +   + V + ++ I + IE L  +V+L
Sbjct: 129 GIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLIFTVQL 187

Query: 242 IDGEFPNYQNVI 253
           I+GE+P+Y++++
Sbjct: 188 IEGEYPDYKSIL 199


>gi|282898715|ref|ZP_06306703.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196583|gb|EFA71492.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii
           CS-505]
          Length = 382

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 181/357 (50%), Gaps = 23/357 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T P+  +VLLQA  N   + + A    + I  +  
Sbjct: 1   MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADVNTNQVSLTAFDLSLGIRTSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VN--ISHGDSNFYLQSFPE 115
           A V   G++ + A +L DI  +L +G      +  +  TE +N  +   +  + L+S   
Sbjct: 61  AEVIEGGAVALPAKILVDITSRLPEGDITLDDQSGDSTTEGINFILKPKNGKYELRSMGA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     E     ++ ++ L   ++ + FA +++E +  L G+   + ++ L+  A  
Sbjct: 121 EEFPELPLIESSNPIQITTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEFAA-- 178

Query: 176 TDGHRLAVAEVDIVAQIAKMP-------SIIVPRKAVGEILRIL--SSKDSSVKVSLSES 226
           TDGHRLAV E      I + P        + VP +A+ E+ R+L  S+ + ++ + L E 
Sbjct: 179 TDGHRLAVLET-----INERPLENDEQLEVTVPARALRELQRMLNHSASEEAISLCLDEG 233

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I    ++  ++ R ++G++P+Y+ +IP   +++L +        ++R++I++  +   V
Sbjct: 234 QIVFAWQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNNIV 293

Query: 287 KLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           K+S+++   ++ ++ +  D+G A ESM    +   +DI FN KYLLE +  + S E+
Sbjct: 294 KISMNTGEQEITLSCEAQDVGNATESMPAQISGEDIDIAFNVKYLLEGLKELPSTEI 350


>gi|58336356|ref|YP_192941.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM]
 gi|227902593|ref|ZP_04020398.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58253673|gb|AAV41910.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM]
 gi|227869682|gb|EEJ77103.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 376

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L+  +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRTTIPILSGIKLELTNEELILTGSDTDISIEIKIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  +    T++ IS  +S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIIKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F    + +K  AVAT
Sbjct: 118 NYPRLPEISDSASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +S+    I +L+
Sbjct: 176 DSHRLSQRIIALENGPQSETDLIIPGKSLQELARIIGETDPEVKVCPGDSQALFVIGNLA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  +   L  A++R S+++   R   V L+L ++K 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDTEKQ 295

Query: 296 CMTVDNPDMGKAIESMNVYYNEC-------PMDICFNYKYLLEIIDNISSDEVV 342
              +     GK+ E  NV  +          ++I FN  Y+ + +    +D V+
Sbjct: 296 TAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|325269039|ref|ZP_08135660.1| DNA-directed DNA polymerase III beta subunit [Prevotella
           multiformis DSM 16608]
 gi|324988660|gb|EGC20622.1| DNA-directed DNA polymerase III beta subunit [Prevotella
           multiformis DSM 16608]
          Length = 374

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 97/371 (26%), Positives = 182/371 (49%), Gaps = 25/371 (6%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC---GSITVSAHLLY 75
           R+I  KN++P+    L + ++  L I AS  E  + G +  +++ C   G   V+ H + 
Sbjct: 19  RVINSKNSLPILDCFLFEIHNRQLTITASDSENVMRGTL--NLEDCEGEGDFAVNNHTIL 76

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELAS 134
           D V++L +          E+   V   +G  NF + S    E+P  +   E   +  + +
Sbjct: 77  DAVKELPEQPLALAVNMEEMKIYVTYQNGSYNFPIMS--AEEYPRVQPMSESATTVTIGA 134

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
           + L + + R+ FA A +E+R  +NG++F + E+   L  VA+DGH+L   ++  V   ++
Sbjct: 135 AKLSDSLTRSLFATAQDELRPVMNGVYFDLKED--GLAVVASDGHKLVRNKIFTVK--SE 190

Query: 195 MP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
            P S ++P+K    +  +LS     V +   +    ++    +++ RLI+G++PNY +VI
Sbjct: 191 TPASFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLACRLIEGKYPNYNSVI 250

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMN 312
           P  N   + ++  +L  A+ RV   +S   Q ++  +SS  L +  ++ D    A ES+ 
Sbjct: 251 PLDNPNLVTIDRKSLIGALRRVLPFASDSSQLIRFYVSSGLLELNAEDIDFATSAKESVT 310

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372
             Y   PM I F    +L+I++N+ SD+V    V+   D S + V +     +S+     
Sbjct: 311 CEYGGNPMSIGFKGSSMLDILNNLESDDV----VIQLADPSRAGVIVPAMQPESE----- 361

Query: 373 KVNAFYVLMPM 383
             +   ++MPM
Sbjct: 362 --DILMLIMPM 370


>gi|222150252|ref|YP_002559405.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119374|dbj|BAH16709.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 377

 Score =  119 bits (299), Expect = 6e-25,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 173/355 (48%), Gaps = 23/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T++R   +  L    + I  + T+PV   + L   D  L +  S  E+ I   IP+ 
Sbjct: 1   MKFTIQRDYFIAQLNDTLKAISPRTTLPVLTGIKLDVFDNRLVLTGSDSEVSIEITIPSE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                  +V+  GSI +      DI++KL  D   I    E     +  I+ G S F + 
Sbjct: 61  LNHEEILTVENKGSIVLPGRFFVDIIKKLPADTVTI----ETNDQFQAKITSGQSEFNVS 116

Query: 112 SFPESEFP---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
                ++P      EEE +    L   VLKN++++T+FA++T E R  L G+ + I   D
Sbjct: 117 GIDSDQYPLLPQVSEEEAI---TLPVKVLKNIIKQTNFAVSTSETRPVLTGVNWLI--RD 171

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L   ATD HRLA+ ++ +        ++I+P KA+ E+ +I+   + ++ +  + +++
Sbjct: 172 NVLNCTATDSHRLALRKLKLEDTNIDEINVIIPGKALSELNKIIGDNEDTIDIFFAANQV 231

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVK 287
                 ++   RL++G +P+   + P  ++  L +N  +   A+DR S+++       +K
Sbjct: 232 LFKFGHINFISRLLEGNYPDTSRLFPEISETALSINNGDFFHAIDRASLLAREGGNNVIK 291

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
           LS + + + ++  +P++G   E++    ++   + I FN KY+++ +  I  ++V
Sbjct: 292 LSATDNTVELSSTSPEIGTVKENVKTSKFDGTGIKISFNSKYMMDALRAIDVEDV 346


>gi|260435668|ref|ZP_05789638.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109]
 gi|260413542|gb|EEX06838.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109]
          Length = 385

 Score =  119 bits (299), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/356 (25%), Positives = 175/356 (49%), Gaps = 17/356 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKVVCSQSELNSALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + ++   ++  G +V ++    ++ ++     ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLSSDSPVTLAVDDS-GEQVQLTSLSGSYQMRGMSADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L    L   ++ T FA + +E +  L G+    N+  L+  A ATDG
Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177

Query: 179 HRLAVAEV-DIVAQIAKMPS-------IIVPRKAVGEILRILSSKDSSVKVSL--SESRI 228
           HRLAV  V D +  +A   S       + +P +++ E+ R+++S  S   VSL     ++
Sbjct: 178 HRLAVLNVEDALQDVAVTDSAEDESFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            L      ++ R ++G +PNY  +IP    +   ++   L  A++R+++++      VK 
Sbjct: 238 VLLAADQMVTSRTLEGTYPNYGQLIPDGFTRTFGMDRRALIAALERIAVLADQHNNVVKF 297

Query: 289 SLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           S   +   + ++ D  D+G   ES+        M I FN +YLL+ +  + SD +V
Sbjct: 298 SSQPEDGVVQISADAQDVGSGSESLPSNLEGDAMQIAFNVRYLLDGLKAMGSDRIV 353


>gi|116493576|ref|YP_805310.1| DNA polymerase sliding clamp subunit [Lactobacillus casei ATCC 334]
 gi|191636826|ref|YP_001985992.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei
           BL23]
 gi|239630806|ref|ZP_04673837.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|116103726|gb|ABJ68868.1| DNA polymerase III, beta subunit [Lactobacillus casei ATCC 334]
 gi|190711128|emb|CAQ65134.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei
           BL23]
 gi|239527089|gb|EEQ66090.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327380863|gb|AEA52339.1| DNA-directed DNA polymerase [Lactobacillus casei LC2W]
 gi|327384029|gb|AEA55503.1| DNA-directed DNA polymerase [Lactobacillus casei BD-II]
          Length = 379

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 164/341 (48%), Gaps = 18/341 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A+
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F +   
Sbjct: 61  DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  +++ VL+ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   + +    A    II+P K++ E+ R+LS     +++ ++E+++     
Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYL 329
           +  K  +  ++PD+G   E  S N    E  ++I FN  Y+
Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGED-LEISFNPDYM 335


>gi|315037232|ref|YP_004030800.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112]
 gi|312275365|gb|ADQ58005.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112]
 gi|327182551|gb|AEA30998.1| DNA polymerase III subunit beta [Lactobacillus amylovorus GRL 1118]
          Length = 376

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 166/350 (47%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T++ +S   S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-VSES-SEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  N + +K  AVAT
Sbjct: 118 NYPRLPEISDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI++  D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL--SSD 293
              RL+DG +P+   +IP      +  +   L  A++R S+++   R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
              ++  + ++G   E ++    E   ++I FN  Y+ + +    +D V+
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|94984112|ref|YP_603476.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
 gi|94554393|gb|ABF44307.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
          Length = 360

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 96/367 (26%), Positives = 187/367 (50%), Gaps = 33/367 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V +  + E LG   R+I  +++ P+   + ++A++  L +  +  EI+++  +PA 
Sbjct: 1   MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQS-----FP 114
           V    S  + AHL   IVR L  G ++    E EL G E+++  G S+F LQ+     +P
Sbjct: 61  VQAPQSFVIPAHLFAQIVRNL--GGELV---ELELTGGELSVRAGGSDFKLQTGDLEAYP 115

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              FP+  +        L ++ L   +    +A + E  +    GI         ++  V
Sbjct: 116 PLSFPTHTD------VSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARV--V 167

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+DG+R+A+   D  A      ++IVP ++  E++R+L  KD   + +  E  + +  + 
Sbjct: 168 ASDGYRVAIR--DFPAS-GDGRNLIVPARSADELIRVL--KDGEARFTYGEGLLSVTTDR 222

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293
           + M+++L+DGEFP+Y+ VIP     ++ +  T L++AV RV++++       V+  +S  
Sbjct: 223 VRMNLKLLDGEFPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEG 282

Query: 294 KLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           KL +  +  D G+A ++++V     E  M + FN +++L+ +  I  D     E++F   
Sbjct: 283 KLRLAAEG-DYGRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGDA----ELLFS-G 336

Query: 352 SSNSSVF 358
           S++ ++F
Sbjct: 337 STSPAIF 343


>gi|325955723|ref|YP_004286333.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC]
 gi|325332288|gb|ADZ06196.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC]
          Length = 376

 Score =  119 bits (298), Expect = 7e-25,   Method: Compositional matrix adjust.
 Identities = 92/350 (26%), Positives = 166/350 (47%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T++ +S   S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-VSES-SEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  N + +K  AVAT
Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI++  D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL--SSD 293
              RL+DG +P+   +IP      +  +   L  A++R S+++   R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
              ++  + ++G   E ++    E   ++I FN  Y+ + +    +D V+
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|261879423|ref|ZP_06005850.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis
           DSM 17361]
 gi|270333991|gb|EFA44777.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis
           DSM 17361]
          Length = 374

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 169/345 (48%), Gaps = 10/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  + +   L    ++I  KN++P+    L+Q ++G L I AS  E  +  ++   
Sbjct: 1   MRFTLSSTALNSRLQTLSKVINNKNSLPILESFLMQVHNGQLTITASDNENMMQASLALD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           + D  G   + +H + D V++L +  Q   F+ N    EV + + +  +   +    ++P
Sbjct: 61  NFDTDGVFAIPSHTILDAVKELPE--QPLTFEVNPDTYEVTVGYQNGQYQFAAQNADDYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +     V+   + + +L N + RT FA    EIR  +NG++F +  + L    VA+DG
Sbjct: 119 RNEPLSGDVHVITIDAEMLCNSLSRTLFATDNNEIRPVMNGVYFDLTPDCLSF--VASDG 176

Query: 179 HRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           H+L       I + I    S+I+P+K    +   L+ +   V +  ++    +      +
Sbjct: 177 HKLVRCRNYSIKSDIPA--SLIMPKKPATLLKNTLAKEHGDVVIKFNDQSAEVKYSEGLL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+G FPNY   IP  N  E+ ++   L  A+ RV   +S+  Q V+  L++  L +
Sbjct: 235 ICRLIEGVFPNYNAAIPTDNPNEVNIDRKVLLSAIRRVLPFASMSSQLVRFRLNTGSLEV 294

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + ++ D   +A E +   YN  PM I F   +L+EI++++ +DE+
Sbjct: 295 SSEDLDFATRAKEELVCEYNGQPMQIGFRGDFLMEILNSLDTDEI 339


>gi|206895201|ref|YP_002246438.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737818|gb|ACI16896.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 361

 Score =  119 bits (298), Expect = 8e-25,   Method: Compositional matrix adjust.
 Identities = 98/390 (25%), Positives = 188/390 (48%), Gaps = 34/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + + ++++ L    R + +K T PV  ++LL+A D  L+I  +  +  ++  I   
Sbjct: 1   MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIALE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
                  TV A    D V+K   G+++     EN L    +IS G ++  L + P  E+P
Sbjct: 61  AAEELRTTVPAKFFSDFVKK-APGSEVQLEVGENYL----SISSGSASLKLSTLPPEEYP 115

Query: 120 STKEEEYVY--SFELASSVLKNLVERTHFAMATEEIR-YYLNGIFFHINEEDLKLCAVAT 176
              E E +   +F + ++ LK  V+     ++  E+R   L GI    +E    L AV T
Sbjct: 116 ---ELEVLQGNTFTVDAATLKKAVDAVKKNVSKGELRNPVLEGILLDGSEG--MLIAVGT 170

Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           DGHRLA  + D+ V + A +P+ ++      ++   L +  S+  ++  +  +    + +
Sbjct: 171 DGHRLAACKTDLQVTETACLPADVL-----SDVCDTLVNTGSTAYITFGDGEVAFENDVI 225

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              +R ++G+FP +++VIP + +  +R++   +   +DR  +++     AV+L+L    L
Sbjct: 226 YAVIRTLEGQFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSL 285

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++ + P++G  +ES+ V      + I  NY YL +++  I      +D VVF L S   
Sbjct: 286 TISAEVPELGSFVESIPVDKEGPDLKIACNYAYLQDVLSGID-----EDNVVFGLTSPLH 340

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + IR  + +         N   ++MPM++
Sbjct: 341 PIVIRPVESE---------NYVGLVMPMKL 361


>gi|54021966|ref|YP_116208.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152]
 gi|54013474|dbj|BAD54844.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM
           10152]
          Length = 386

 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 104/403 (25%), Positives = 184/403 (45%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  V R D  E +    R +  +  +PV   VLL AN DGL     SG + E++  +  
Sbjct: 1   MKFRVAREDFAESVAWVARSLPSRPPVPVLGGVLLVANEDGL---TVSGFDYEVSAQMRV 57

Query: 60  SVDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFP 114
           + +V G   + VS  LL DI + L +       K  ++   GT V I+ G + F L + P
Sbjct: 58  AAEVAGPGEVLVSGRLLADITKALSN-------KPVDVSVDGTRVLITCGSAKFSLPTMP 110

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P   E     + EL+  V    V +   A   ++    L GI   I  E  ++   
Sbjct: 111 VEDYPQLPEVPQ-QTGELSVDVFAEAVGQVAVAAGRDDTLPMLTGIRVEI--EGSQVVLA 167

Query: 175 ATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSL-----SESRI 228
           ATD  RLAV  ++       +  ++++P + + E  + L + D+ V++SL     S+  +
Sbjct: 168 ATDRFRLAVRHIEWTPARPDIETAVLIPARTLSEAAKTLGASDAPVQLSLGTGAGSDGLL 227

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            +       + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V+L
Sbjct: 228 GIVNAGRRTTTRLLDAEFPKFRQLLPKEHTSVATLAVAALTEAIKRVALVAE-RGAQVRL 286

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             S++ L ++    D G+A E +   +   P+ I FN  YL   +D +S+     D V F
Sbjct: 287 EFSTEGLLLSAGGDDAGRAEEWLEADFRGEPLTIAFNPGYL---VDGLSALHA--DRVTF 341

Query: 349 RLDS-SNSSVFIRGKDKDSKNNKDNKVNAF-----YVLMPMRI 385
              + S  +V +   +++ +        A      Y+LMP+R+
Sbjct: 342 GFTTPSRPAVLLPASEEEPQTLDSGAFAALTGNYTYLLMPVRL 384


>gi|282895332|ref|ZP_06303534.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9]
 gi|281199638|gb|EFA74498.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9]
          Length = 384

 Score =  119 bits (298), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 93/359 (25%), Positives = 178/359 (49%), Gaps = 25/359 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T P+  +VLLQA  N   + + A    + I  +  
Sbjct: 1   MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADENTNQVSLTAFDLSLGIRTSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDG-----AQISFFKENELGTEVNISHGDSNFYLQSF 113
           A V   G+I + A +L DI  +L +G      Q    K    G    +   +  + L+S 
Sbjct: 61  AEVIEGGAIALPAKILVDITSRLPEGDITLDNQSGRSKAKAEGINFILKPKNGKYELRSM 120

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              EFP     E   + +L ++ L   ++ + FA +++E +  L G+   + ++ L+  A
Sbjct: 121 GAEEFPELPLIENSNAIQLTTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEFAA 180

Query: 174 VATDGHRLAVAEVDIVAQIAKMP-------SIIVPRKAVGEILRIL--SSKDSSVKVSLS 224
             TDGHRLAV E      I + P        + VP +A+ E+ R+L  S+ + +V + L 
Sbjct: 181 --TDGHRLAVLET-----INERPLENDEQLEVTVPARALRELQRMLNHSASEEAVSLYLD 233

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           E +I    ++  ++ R ++G++P+Y+ +IP   +++L +        ++R++I++  +  
Sbjct: 234 EGQIVFAWQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNN 293

Query: 285 AVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            VK+++++   ++ ++ +  D+G A ESM    +   + I FN KYLLE +  + S E+
Sbjct: 294 IVKININTGDQEITLSCEAQDVGNATESMPAQISGEDIVIAFNVKYLLEGLKELPSTEI 352


>gi|167461552|ref|ZP_02326641.1| DNA polymerase III subunit beta [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381373|ref|ZP_08055376.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154949|gb|EFX47220.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 380

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 180/353 (50%), Gaps = 17/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK+T+ ++ + E + H  + I  K TIP+   + + A    + + AS  +I I    P  
Sbjct: 1   MKLTILKNYLTESIQHVSKAISSKTTIPILTGIKIDAATSGVTLTASDTDISIQSFTPNE 60

Query: 59  ----ASVDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
               A +++   GS+ + A    +I+RKL    +I     +   T   I  G S   +  
Sbjct: 61  NEEIAIIELHQPGSVVLPAKFFMEIIRKL-PSQKIEIEVRDHFQT--IIRSGSSEIQIMG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E     ++ S +LK ++++T FA++T E    L G+ +H+  +D KL 
Sbjct: 118 LDPEEYPLLPQLEESKMIQIPSDLLKTMIKQTSFAVSTNETTPILTGVLWHV--QDGKLK 175

Query: 173 AVATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +A D HRLA  E+ +   +A+   +I++  + + E+ +IL  +++ + + +S++++   
Sbjct: 176 FIACDRHRLASREISLDLDVAQTFHNIVISGRTLNELSKILPDQNALIDILVSDNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
           I S+    R++DG +P+   +IP S   EL VN   L  A+DR  ++S   +   VKL +
Sbjct: 236 INSILFYSRILDGTYPDTSKLIPQSFQTELIVNTKELADAIDRAYLLSREDKTNIVKLIM 295

Query: 291 SSDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
             D+ + ++  + ++GK  E +++  +    + I FN KY+L+ +  + SD +
Sbjct: 296 LEDETIEISSSSSELGKVTEQLSLQSFKGERLRISFNSKYMLDALKVMDSDYI 348


>gi|269837341|ref|YP_003319569.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786604|gb|ACZ38747.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 379

 Score =  119 bits (297), Expect = 9e-25,   Method: Compositional matrix adjust.
 Identities = 109/405 (26%), Positives = 186/405 (45%), Gaps = 48/405 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++ ++ D+   LG+  R + RK+T+PV  +VLL A  G L++ A+  EI IT    A+
Sbjct: 1   MRLSCQQEDLQRALGYVSRAVSRKSTLPVLGNVLLSAEGGRLKLAATNLEIAITAWADAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G+ITV + LL + V  L  D   I   +       V +S   S  +++     +FP
Sbjct: 61  VEEEGTITVRSDLLTEFVASLPNDSVSIELDRRT---LSVAVSCARSKAHIKGIGAEDFP 117

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
              S  + E     + A    +  + +  FA AT++ R  L G+        L L A   
Sbjct: 118 TLASIGDTEPTARIDPAE--FREAIGQVAFAAATDDSRPVLAGVLAEFEGASLTLAAA-- 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG RL+V   D+V    +  SI+VP +A+ E+ RI+   +  + ++++ +R  L + + S
Sbjct: 174 DGFRLSVRRCDLVEPSRESLSIVVPARALQELARIIGDLEEPIDLAVTPNRSQLLVRAGS 233

Query: 237 MSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----VRIQA---- 285
           +    RLIDG FP+ +++IP +    + V+      A  R  + +      VRIQ     
Sbjct: 234 IEFLSRLIDGHFPDVRHIIPQTYGTRMVVSRDEFLAAARRAKLFAQSNNDVVRIQMNPGD 293

Query: 286 ----VKLSLSSDKLCMTVDNPDMGKA-IESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
                  +  S +   T DN D  +A +E    +       I FN +YL E++  + S  
Sbjct: 294 GELDPGFATISAQAAETGDNEDHLEAQVEGPQAH-------IAFNGRYLTEVLSVMRS-- 344

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +EV   + S N++   +    D         +  +V+MPM I
Sbjct: 345 ---NEVALEMTSPNAAGVFKPVGSD---------DFTHVIMPMVI 377


>gi|227529861|ref|ZP_03959910.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350230|gb|EEJ40521.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 379

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 98/341 (28%), Positives = 170/341 (49%), Gaps = 18/341 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGLLEIKASGPEIEITGAIPA 59
           MK T+ RS  +  L +  R I  K TIP+   + ++ AND +  +  S  +I I   + A
Sbjct: 1   MKFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVANDSI-TLTGSNSDITIESVMSA 59

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           S       +   GSI + A    +IV+KL D   ++   E   G + +I+ G + F +  
Sbjct: 60  SNEDYELKIAEPGSIVLPARFFSEIVKKLPD-KHVTI--EITSGFQADITSGSAKFQING 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                FP   E E   +  LA+ +LK ++ +T  A++ +E R  L GI  H+   D  L 
Sbjct: 117 QDAENFPHLPEVEANNTVVLANDMLKEVIRQTVIAVSKQESRPILAGI--HVTLHDGLLT 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA  +V +         +I+P K++ E+  ++S  D  VK+ ++++++    
Sbjct: 175 AVATDSHRLAQRKVQLDGVGDVNYDVIIPGKSLDELSGMISDVDDDVKMQVTDNQVLFIF 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            +     RL++G +P    +IP ++D  + V+      ++DR S++S   R   VKL++ 
Sbjct: 235 GNTHFYSRLLEGNYPETSQLIPDTSDTTVEVDAGTFLSSIDRASLLSHESRNYVVKLTIK 294

Query: 292 -SDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
             +KL  ++ D+PD+G   E +     E   ++I FN  Y+
Sbjct: 295 PGEKLVRISGDSPDIGMVEEDVATSAVEGNDLEISFNPNYM 335


>gi|220905645|ref|YP_002480956.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7425]
 gi|219862256|gb|ACL42595.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7425]
          Length = 374

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 92/348 (26%), Positives = 173/348 (49%), Gaps = 13/348 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +SD+   L    R++  K T PV  +VLL+A    L +      + +   IPA 
Sbjct: 1   MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +V GS T+ A    DIV +L + A I+   E+     V ++ G  ++ +Q     EF +
Sbjct: 61  TEVPGSFTLPARFFNDIVSRLPN-APITIAVESP---TVTLACGAGHYQMQGLEAEEFTA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  L SS+L   ++ T FA +T+E +  L G+   +  + L+    ATDGHR
Sbjct: 117 LPDLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEFA--ATDGHR 174

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----L 235
           LAVA           P S+ VP KA+ E+ R+L     ++ +   ++++     +     
Sbjct: 175 LAVAYGQPEEFSPDTPLSVTVPAKALRELERMLGRTPVALTLRCDQTQVVFEFATEQGMA 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--D 293
            +S RL++G +PNY+ ++P   ++++ V        ++R+++++  +   VK+ L +   
Sbjct: 235 RLSSRLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQ 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +L ++ + P  G   ES+    +   +++ FN KYL++ +  +++ EV
Sbjct: 295 QLDVSAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTASEV 342


>gi|227533505|ref|ZP_03963554.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227188834|gb|EEI68901.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 434

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/341 (26%), Positives = 164/341 (48%), Gaps = 18/341 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A+
Sbjct: 56  MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 115

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F +   
Sbjct: 116 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 172

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  +++ VL+ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 173 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 230

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   + +    A    II+P K++ E+ R+LS     +++ ++E+++     
Sbjct: 231 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 290

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++
Sbjct: 291 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 350

Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYL 329
           +  K  +  ++PD+G   E  S N    E  ++I FN  Y+
Sbjct: 351 ADQKATIYGNSPDVGNVEEVLSFNKLSGE-DLEISFNPDYM 390


>gi|218437347|ref|YP_002375676.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424]
 gi|218170075|gb|ACK68808.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424]
          Length = 394

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 96/364 (26%), Positives = 179/364 (49%), Gaps = 25/364 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK T  +SD+   L    R +  + T P+  +VL  A+   GL+ + A    + I  +  
Sbjct: 1   MKFTCSQSDLNTNLSLVSRAVSSRPTHPILGNVLFVADLEQGLISLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGA-----QISFFKENELGTEVNISHGDSNFYLQSF 113
           A+++  G+IT+ A LL DIV +L +G      +    +E++  T+V+I      F L+  
Sbjct: 61  ATIEEEGTITLPAKLLNDIVSRLPEGEITITLEPEEDEEDQEHTKVSIESVSGRFQLRGM 120

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              +FP       V   +L  S L   ++ + FA +T+E +  L G+ F   ++ L+  A
Sbjct: 121 KADDFPELPTIANVDPLKLPISALTEGLKGSLFAASTDETKQVLTGVHFAGQQDSLEFAA 180

Query: 174 VATDGHRLAVAEVDIVAQIAKMP------------SIIVPRKAVGEILRILSSKDSSVKV 221
             TDGHRLAV +        +              +I +P +A+ E+ RI+     +  +
Sbjct: 181 --TDGHRLAVVQTPTQETTEEEQTPPEPSSNLEGFAITIPARALRELERIMGMHKETDAI 238

Query: 222 SL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +L   E ++   + S  ++ R ++G +PNYQ +IP    +   +    L  +++RV++++
Sbjct: 239 TLYVDEGQVIFELGSQRLTSRKLEGAYPNYQQLIPRQFSRSATLERKRLLSSLERVALLA 298

Query: 280 SVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
             +   VK +LSS+K  L ++V++ D+G A ES+         +I FN KYL++ +  + 
Sbjct: 299 DQKNNLVKFTLSSEKGQLILSVESQDLGSARESIPAEIIGESGEIAFNVKYLMDGLKALP 358

Query: 338 SDEV 341
           + ++
Sbjct: 359 ASDI 362


>gi|293380892|ref|ZP_06626928.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1]
 gi|290922565|gb|EFD99531.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1]
          Length = 376

 Score =  119 bits (297), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T++ IS  +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + + +K  AVAT
Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  + + L  A++R S+++   R   V L+L  +  
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDVENQ 295

Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342
              +     GK+ E  NV     + N     ++I FN  Y+ + +    +D V+
Sbjct: 296 SAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|223983628|ref|ZP_03633806.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM
           12042]
 gi|223964395|gb|EEF68729.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM
           12042]
          Length = 373

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/336 (26%), Positives = 168/336 (50%), Gaps = 16/336 (4%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGS 66
           L    R I   + +P    + ++ N   + +  S  +I I   +  S       V   GS
Sbjct: 14  LNTVSRAISSNSPLPALSGIKIEVNQDSIVLTGSDSDISIQTTLKGSDEEINLIVKETGS 73

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           I + A  + +IVRK+ D  +I    E   G+   IS   + F +      ++P+      
Sbjct: 74  IVIEAKYILEIVRKI-DADEIEL--EIVDGSLTKISGMSAEFRINGMRALDYPAIDFTRP 130

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
              FE+ + VL  ++ +T FA +  E R  L G+    + +  +L  VATD +RLA   V
Sbjct: 131 GQQFEMDADVLLKVISQTTFATSDRETRPVLTGVNMKCSGK--RLECVATDSYRLARKIV 188

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
           D+ ++     +I +P K++ E+ + ++ +DSSV +++S+ +    I    +  RLIDG +
Sbjct: 189 DLTSE--NNFNITIPAKSLNEVSKTIA-QDSSVLIAVSDKKAQFWIGETVIQTRLIDGAY 245

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P    +IP     EL V+  ++  A+DR S + +  I  VKLS +S+++ ++  + ++G 
Sbjct: 246 PETARLIPTEFAHELTVDSRDMLNAIDRASFIKNEGISIVKLSANSEEVVISSKSQEVGS 305

Query: 307 AIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           ++E++N+  Y   P++I F+ KY+ E I  +S+  +
Sbjct: 306 SVENLNILTYEGNPLEISFSGKYVFEAIRVLSATTI 341


>gi|198274538|ref|ZP_03207070.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135]
 gi|198272592|gb|EDY96861.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/389 (24%), Positives = 189/389 (48%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+I V ++ +L+ L    RII+ KNT+P   + L   ++ G +++ A      I+  +  
Sbjct: 1   MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             D V  S   SA  L D ++++ +    IS +++     E+ + + +  F +      +
Sbjct: 61  KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEK-----EMIVKYANGKFTMPIEDGKQ 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P    ++  +SF L+ + L   V +  F  A +E+R  +NG++F I+ E  K   V TD
Sbjct: 116 YPEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSYVGTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G RLA+ E+       +    I+P K    +  ++      ++V ++ + +  + +S  +
Sbjct: 174 GSRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             R+I+G +PNY+ VIP +  K + +   +L  A+ RVS+  ++    V L      L +
Sbjct: 234 VCRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLI 293

Query: 298 TVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           T  + D  K+ E   +  + C  ++I F   +L+E++++I S+++     +   D S ++
Sbjct: 294 TAHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDI----SISMTDPSRAA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V  R  +++         +  Y+LMPM I
Sbjct: 350 VLSRCDEEER--------SLTYLLMPMSI 370


>gi|169335350|ref|ZP_02862543.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258088|gb|EDS72054.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM
           17244]
          Length = 368

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 103/390 (26%), Positives = 196/390 (50%), Gaps = 29/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V+R++ L+ L    +    +N   +   +LL++ D +L + A+  EI+I+  I A 
Sbjct: 1   MNIKVDRNEFLKALITVSKATTLRNVGSLE-GILLESYDDVLSLYATNKEIQISTIIDAK 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +++ +L DIVR   +G       EN     + ++  +S F + +     FP+
Sbjct: 60  VIREGKLLINSRILSDIVRSFDNGEVEIDADEN---NNIKLTCLNSKFNITAMDHRTFPN 116

Query: 121 TKEEEYVYSF-ELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDG 178
            KE   +  F ++ + V++N+++ T FA AT + +   L GI    N+ED+K   VA DG
Sbjct: 117 -KEVYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKF--VAIDG 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            R+A+       +       +VP   + E+ +IL++ D  V +++++ +   NI    + 
Sbjct: 174 FRMAIRSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
             L+ G+F +Y N++P  +   +++N   L  A +R +I+S   R   + L  + + L +
Sbjct: 234 SSLLQGQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356
           T  +   G   E++N+  +   +DI FN +Y+++ +      +V++DE V+   +SSNS 
Sbjct: 294 TSKSA-YGNVEENININLSGEDLDISFNSRYVIDAL------KVIEDEKVILEFNSSNSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
             I+              N F Y++MP+RI
Sbjct: 347 CLIKPVSS----------NKFTYLIMPVRI 366


>gi|256843830|ref|ZP_05549317.1| DNA polymerase III, beta subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256849615|ref|ZP_05555047.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US]
 gi|262046283|ref|ZP_06019246.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US]
 gi|256613735|gb|EEU18937.1| DNA polymerase III, beta subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256713731|gb|EEU28720.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US]
 gi|260573613|gb|EEX30170.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US]
          Length = 376

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T++ IS  +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + + +K  AVAT
Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  + + L  A++R S+++   R   V L+L  +  
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295

Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342
              +     GK+ E  NV     + N     ++I FN  Y+ + +    +D V+
Sbjct: 296 SAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|227877541|ref|ZP_03995602.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227862864|gb|EEJ70322.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 376

 Score =  118 bits (296), Expect = 1e-24,   Method: Compositional matrix adjust.
 Identities = 90/350 (25%), Positives = 166/350 (47%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T++ IS  +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + + +K  AVAT
Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++   +  V    L + + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGLNNVVTLTLDIENQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
              ++  + ++G   E ++    E   ++I FN  Y+ + +    +D V+
Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|37522801|ref|NP_926178.1| DNA polymerase III subunit beta [Gloeobacter violaceus PCC 7421]
 gi|35213803|dbj|BAC91173.1| DNA polymerase III beta subunit [Gloeobacter violaceus PCC 7421]
          Length = 376

 Score =  118 bits (296), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 173/349 (49%), Gaps = 13/349 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAI 57
           MKI   ++ + + L    R +  + T P+  ++LL+A+     +  +G ++++   T   
Sbjct: 1   MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              V+  G  T+ A +L DI+ +L + +      E+     +++  G S + +Q     E
Sbjct: 61  AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSED---NAISLVCGSSQYQVQGASAEE 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E     +  L  S     V+R+ FA +T+E +  LNG+     +E ++   VATD
Sbjct: 118 FPKLPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEF--VATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES 234
            HRL+    D     A   +I  ++P ++V E+ +IL ++   SV+V   E ++     +
Sbjct: 176 AHRLSFYRTDFTLPEAGTQAIAAVLPVRSVRELEKILGAQAGDSVEVRFDEKQMIFQFPN 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +++ RL+ G +P+YQ ++P    +   +    L   ++R+++++  +   VKL  +  +
Sbjct: 236 QTLTTRLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSE 295

Query: 295 LCMT--VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             MT  VD PD+G+  ES+ V Y+     + FN +YLLE +  + + +V
Sbjct: 296 HLMTVSVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATDV 344


>gi|260174985|ref|ZP_05761397.1| DNA polymerase III, beta chain [Bacteroides sp. D2]
 gi|315923219|ref|ZP_07919459.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697094|gb|EFS33929.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 371

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 180/388 (46%), Gaps = 22/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+ITV ++ +L+ L    RII+ KN+IP   + L   ++ G++ + A      I+  I  
Sbjct: 1   MEITVSKTALLDKLKSIGRIIQPKNSIPAYDNFLFVVDEFGIILVTAGEEGGRISTNIDG 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             D    S   +A  L D ++++ +        E EL     + + +  F +      ++
Sbjct: 61  KTDFTDRSFMANAKTLLDGLKEIPEQPLTIHLYEKELV----VKYANGKFSIPVEKGDQY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+   +       ++ + L   + +  F  A +E+R  LNG++F I+ +++    VATDG
Sbjct: 117 PTMSTDNTATPLLVSGNDLLYGIRQVLFCSANDELRPVLNGVYFDIDLDNISF--VATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+ E        +  + I+P K    +  I+      V++S++++ I    +S  + 
Sbjct: 175 TRLAMIENPSAYTRKERAAFILPSKFAKVLSNIVPEDCMEVEISVNQTNILFEFDSYRLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I+G FPNY+ VIP        +  T++  A+ RVS+        V L    D L +T
Sbjct: 235 CRMIEGRFPNYRAVIPQKQPNRAVLKRTDIVSALKRVSVFCDENSSLVILKFCPDSLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  K+ E        C ++I F   +L+E+I+NI S+++     +   D S +S+ 
Sbjct: 295 AHNLDFCKSAEETVALRTGCDIEIGFKSSFLIEMINNIPSEDI----AITMSDPSKASIL 350

Query: 359 IRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
            R          D +V +  Y+LMP+ I
Sbjct: 351 TRC---------DEEVRSLTYLLMPLSI 369


>gi|259047904|ref|ZP_05738305.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC
           49175]
 gi|259035438|gb|EEW36693.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC
           49175]
          Length = 385

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/360 (27%), Positives = 175/360 (48%), Gaps = 30/360 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK +V R   L+ L    R I  K TIP+   + L A++  L +  S  E+ I   +P  
Sbjct: 1   MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60

Query: 59  -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQS 112
                 +V   GSI + A    +IV+KL     ++ F  E     +  I+ G ++F L  
Sbjct: 61  DEELQLTVQEPGSIVLPARFFGEIVKKLP----LNLFSIETNDQLQATITAGSASFTLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E E  +   +   + + ++ +T  A++T E R  L GI  H+  +D KL 
Sbjct: 117 LSAVDYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGI--HMVIKDNKLK 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLS 224
           AVATD HRL+   + +     +MP+        + +P K + E+ RI+   ++ +  +++
Sbjct: 175 AVATDSHRLSQRIIPL-----QMPAGSDALTFEMTLPGKTLLELSRIIDGLET-IDFAIT 228

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RI 283
           +++I    E+LS   RL++G +P+   +I    +  + V  + L  AV+R S+MS   + 
Sbjct: 229 DNQILFQTETLSFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKN 288

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
               L+LS +++ +T  +P++G   E + V  +   P++I FN  YL E +    S E V
Sbjct: 289 NIATLTLSPERILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEALKLFGSSEAV 348


>gi|292669294|ref|ZP_06602720.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia
           ATCC 43541]
 gi|292649135|gb|EFF67107.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia
           ATCC 43541]
          Length = 380

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 193/396 (48%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I++ ++D++  L    + +  K   P+   + + A +G LE++ +  E+     IPA 
Sbjct: 1   MNISLAKNDLISALQIVSKGLSTKPQTPILSGIYMTAKEGQLELQTTNYELGFILTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  +    L +  RKL    ++S   ++  G  V I  G + F L++   S+FP 
Sbjct: 61  IHNTGTAVLPGKYLTEFARKLP-AEEVSIDTDSADGLAV-IQSGAARFTLRTMEISDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF--HINEEDLKLCAVATDG 178
               +    F +    L  LV+++ FA   EE R     IF    +  E  ++   AT+ 
Sbjct: 119 LHHMDGTLHFTIKDRTLARLVKKSAFACLREEQRDR-RPIFTGCQLEVEGKEITFAATNV 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237
           HRLAV + + + + A    +I+P K + E+ R +SS+  + + V+ S +++ ++  S+ M
Sbjct: 178 HRLAV-KSEQLEEDAGQIRVIIPAKFLEEVTRTISSEVPADIHVTCSYNQVSMSSGSIYM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDK 294
           + RLI+G FP+Y+ VIP   +   +V  +  +   AVDR S+++   +   VKLS +   
Sbjct: 237 TARLIEGTFPDYRRVIPREENIRTKVTLDAASFASAVDRASLIARADQYNIVKLSFTQGL 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++ ++P++G+A E++        + I FN  YL++ + ++ S     D  +  L  SN
Sbjct: 297 MRISSNSPEIGEAEETIPAEVTGDDVTIAFNASYLMDALKSLDS-----DTCILSLQGSN 351

Query: 355 ------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + IR         ++   N  YV+ P+R
Sbjct: 352 EQGVNLSPMTIR---------EEADPNYIYVVTPVR 378


>gi|295691864|ref|YP_003600474.1| DNA polymerase iii, beta subunit [Lactobacillus crispatus ST1]
 gi|295029970|emb|CBL49449.1| DNA polymerase III, beta subunit [Lactobacillus crispatus ST1]
          Length = 376

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 166/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIQIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T++ IS  +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + + +K  AVAT
Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  + + L  A++R S+++   R   V L+L  +  
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295

Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342
              +     GK+ E  NV     + N     ++I FN  Y+ + +    +D V+
Sbjct: 296 SAKLS----GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 345


>gi|260584258|ref|ZP_05852005.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC
           700633]
 gi|260157776|gb|EEW92845.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC
           700633]
          Length = 385

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 97/357 (27%), Positives = 169/357 (47%), Gaps = 28/357 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK ++ R   L+ L    R I  K TIP+   + L  +   + +  S  E+ I   +P  
Sbjct: 1   MKFSINRQAFLKNLADVQRAIPSKTTIPILTGIKLVVSQEGITLTGSDSEVSIEIFLPVE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 S+   GSI + A    +IV+KL    Q +F  E     +  I+ G + F L   
Sbjct: 61  HEELQLSIVETGSIVLPARFFGEIVKKL---PQNTFTLETNEQLQATITAGSAAFTLNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P   E E  +   L   + + ++ +T  A++T E R  L GI   I    LK  A
Sbjct: 118 SAHDYPQLPEVEKDHVLTLPVPLFRQVILQTSIAVSTAESRPILTGIHMVIANNQLK--A 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLSE 225
           VATD HRL+   + +     +MP         I +P K + E+ RI+   ++ +  +++E
Sbjct: 176 VATDSHRLSQRIIPL-----EMPETSNALTFEITLPGKTLIELSRIIDGLET-IDFAITE 229

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQ 284
           +++    E+LS   RL++G +P+   +I    +  + V  ++L  AVDR S+MS   +  
Sbjct: 230 NQVLFQTETLSFYSRLLEGRYPDTDRLINDQFNTAITVVASDLVAAVDRASLMSHTDKNN 289

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDE 340
              LS++ +++ +T ++P++GK  E + V  Y    +D+ FN  YL + +    S E
Sbjct: 290 IATLSINENRILLTGNSPEIGKVEEEITVENYEGASLDVSFNPDYLKDALRLFGSSE 346


>gi|159029576|emb|CAO90235.1| dnaN [Microcystis aeruginosa PCC 7806]
          Length = 382

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 180/355 (50%), Gaps = 19/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK T  +S++   L    R +  + T PV  +VL  A++  G + + A    + I  +  
Sbjct: 1   MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L +G      +ENE   E +++      + F ++    
Sbjct: 61  AEVLEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH---FAMATEEIRYYLNGIFFHINEEDLKLC 172
            EFP   E   V   E+ +  +  L E      FA + +E +  L G+  H+ +    L 
Sbjct: 121 DEFP---ELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGV--HLTKTVDCLE 175

Query: 173 AVATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRI 228
             ATDGHRLAV +  +  V   +   ++ +P +A+ E+ R++++K +  ++ + + +S++
Sbjct: 176 FAATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQV 235

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
              +    ++ R ++G +P Y  +IP S D+ L ++   L + ++ V+++S  +   VK 
Sbjct: 236 TFEMGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKF 295

Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           SL S  D+L + V++PD+G A ESM         DI FN KYL++ +  + ++++
Sbjct: 296 SLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 350


>gi|320449108|ref|YP_004201204.1| DNA polymerase III subunit beta [Thermus scotoductus SA-01]
 gi|320149277|gb|ADW20655.1| DNA polymerase III, subunit beta [Thermus scotoductus SA-01]
          Length = 371

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 171/352 (48%), Gaps = 20/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V ++ + E +    R+I  +++ P+  ++ L      L +  +  E+++   +   
Sbjct: 1   MKVKVPKTLLTEHVALLERVIPTRSSNPLFTYLGLALTPDALVLFGTNGEVDLEVRLELP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115
            +  G   V A   + +V+ L  G Q+    E + G E+++S G  +  L     + +PE
Sbjct: 61  TEGEGRFLVPAQPFFQLVKSL-PGDQV----ELDFGAELSLSSGSFSTRLSLAPDEGYPE 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH--FAMATEEIRYYLNGIFFHINEEDLKLCA 173
             FPS +     Y  +    V + L   +H  +A + EE R    G+    +E  L+  +
Sbjct: 116 LFFPSLEGPAEPYPLQTLLPVEELLKALSHVRYAASNEEYRAIFRGVQLEFSEGGLR--S 173

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232
           VA+DG+RLA+  +      AK   ++VP ++V E++R+L    +  V ++L    + L  
Sbjct: 174 VASDGYRLALYRLAKPQPFAK--KVVVPARSVDEMVRVLKGMGEGEVALALGPGVLGLAT 231

Query: 233 E--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
               L M+VRL++GEFP+Y+ VIP     +   +    R+A+ RVS++S  +   V L  
Sbjct: 232 GKGQLRMAVRLMEGEFPDYERVIPKEFPLKAAFDVEAFREALRRVSVLSDRQNHRVDLLF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
              ++ ++ +  D GK  E + V     P+ + +N +YLLE +  +S   V+
Sbjct: 292 EERRVLLSAEG-DYGKGQEEIPVRLEGLPLAVAYNARYLLEALSPLSGQAVL 342


>gi|261403878|ref|YP_003240119.1| DNA polymerase III subunit beta [Paenibacillus sp. Y412MC10]
 gi|261280341|gb|ACX62312.1| DNA polymerase III, beta subunit [Paenibacillus sp. Y412MC10]
          Length = 380

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 178/354 (50%), Gaps = 17/354 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI++ ++ + E + H  + I  + TIP+   + L      + + AS  +I I   IPA 
Sbjct: 1   MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL         KEN    +  IS G +   +  
Sbjct: 61  DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  L   +LKN++++T F+++T E    L G+ + +N+ +LK  
Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKFT 177

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A  TD HRLA     +  A      ++++  K + E+ +I+  +++ V + ++++++   
Sbjct: 178 A--TDRHRLATRSAHLEGADGISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289
           I+ +    R++DG +P+   +IP S+  EL ++   L +++DR  ++S      + L  +
Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           +    + ++  + ++GK  E +++  +   P+ I FN KY+L+++  + S++++
Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVESEQLM 349


>gi|301065127|ref|YP_003787150.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str.
           Zhang]
 gi|300437534|gb|ADK17300.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str.
           Zhang]
          Length = 379

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 89/341 (26%), Positives = 164/341 (48%), Gaps = 18/341 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A+
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F +   
Sbjct: 61  DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  +++ V++ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADAALSVSADVVRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   + +    A    II+P K++ E+ R+LS     +++ ++E+++     
Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYL 329
           +  K  +  ++PD+G   E  S N    E  ++I FN  Y+
Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGED-LEISFNPDYM 335


>gi|329925046|ref|ZP_08279990.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5]
 gi|328940165|gb|EGG36497.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5]
          Length = 380

 Score =  118 bits (295), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 178/354 (50%), Gaps = 17/354 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI++ ++ + E + H  + I  + TIP+   + L      + + AS  +I I   IPA 
Sbjct: 1   MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL         KEN    +  IS G +   +  
Sbjct: 61  DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  L   +LKN++++T F+++T E    L G+ + +N+ +LK  
Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKFT 177

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A  TD HRLA     +  A      ++++  K + E+ +I+  +++ V + ++++++   
Sbjct: 178 A--TDRHRLATRSAHLEGADGITFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289
           I+ +    R++DG +P+   +IP S+  EL ++   L +++DR  ++S      + L  +
Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           +    + ++  + ++GK  E +++  +   P+ I FN KY+L+++  + S++++
Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVESEQLM 349


>gi|303240058|ref|ZP_07326579.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2]
 gi|302592327|gb|EFL62054.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2]
          Length = 367

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 197/388 (50%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +  ++E +    + +  K+T+P+   +LL+A+    ++  +  EI I   + A 
Sbjct: 1   MKVICSKEHLIEGINIVQKAVSTKSTLPILEGILLEASSDF-KLTGNDLEIGIECYVQAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ +  DIVR+L D   +     N   + V I   +S+F L+  P   +P+
Sbjct: 60  IQTQGSIVLNSKMFGDIVRRLPDSEVLIEVLPN---SSVIIECENSHFELKGMPSDNYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +F +    +++++ +T FA++ +E R  L G      E ++    V+ DG R
Sbjct: 117 LPSIKKENAFIIKQKTVRDMIRQTLFAVSIDENRPILTGSLLECKENNVTF--VSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ +  I+    K  ++++P K + EI++IL   D  + +  ++++I  +I    +  R
Sbjct: 175 LALRKC-IIENENKSFNVVIPGKTLNEIVKILQPIDEEISIYSTQNQILFDIGKCKVVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299
           L++GE+ NY ++IP   + ++RV   ++  +++R S++++   +  VK ++  +K+ ++ 
Sbjct: 234 LLEGEYLNYNSIIPKDFETKVRVKTKDILSSLERASLITAEEKKYPVKFNVMDEKIVIS- 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E + V  +   +DI FN KY +E +  I      D+EV     SS     I
Sbjct: 293 SNTEIGAVREEVRVDISGNRLDIGFNPKYFIEALKVIE-----DEEVDIYFTSSIGPCTI 347

Query: 360 R--GKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  GK + +           Y+++P+RI
Sbjct: 348 RPIGKQEYA-----------YMILPVRI 364


>gi|267847161|gb|ACY80721.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
 gi|267847163|gb|ACY80722.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58
           I ++  +    L     I+E+KN   +  +V L   ND +   LEI A+  +I I   +P
Sbjct: 20  IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79

Query: 59  ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
             +     SIT+    L +IV+K+  D   I   ++N++   V I  G+   F L + P 
Sbjct: 80  IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKGGEYLEFNLATLPI 136

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173
           + FP  +E  +  +   + +  L  ++E T FA++TEE RY LNGI+ H   +D K L A
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225
           VATDGHRLA A+ +I      + +     +I+PRK + E+ +I    S    +V + +  
Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           ++I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + 
Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324
           V L L    + ++       KA E +                       Y  +  + + F
Sbjct: 315 VILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAF 374

Query: 325 NYKYLLEII 333
           N KYLL+++
Sbjct: 375 NAKYLLDVL 383


>gi|27262250|gb|AAN87406.1| DNA polymerase III, beta chain [Heliobacillus mobilis]
          Length = 298

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 80/303 (26%), Positives = 152/303 (50%), Gaps = 7/303 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +  R ++LE +    R +  + TIP+   + ++A D +L + A+  E+ I   IP  
Sbjct: 1   MEFSCSRGELLEAVNAVSRAVSSRATIPILSGIYMEALDDVLRLVATDMELGIEYTIPVK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  V+A +  ++ R+L +G  I+F+   E    + + +  S   L +    EFP 
Sbjct: 61  TVQTGSTVVNARIFNEMARRLPEGP-ITFYISGET-PALKVRYHGSELTLNTMNPQEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L     K +     FA +T+E R +  G+ + I+ E+++   VATD HR
Sbjct: 119 LPAILDGDHLILTQGQFKEMTRLVCFAASTDESRPWFTGVLWDISPEEVRW--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+        + +    +I+  K + ++ R+LS  ++S++++++ S+  L  + + + +
Sbjct: 177 LALLSGQATESVIQQNRQVILHAKTLSDVARLLSDDEASLQITITRSQALLETDRMRVIL 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R+I+G++P YQ VIP      + V+   L  +VDR S+ +  +  +  + LSSDK   T 
Sbjct: 237 RIIEGQYPKYQQVIPRDYKTRMTVSVKALADSVDRASLAAIGKEGSNIIKLSSDK--NTF 294

Query: 300 DNP 302
           D+P
Sbjct: 295 DDP 297


>gi|289422499|ref|ZP_06424342.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius
           653-L]
 gi|289157071|gb|EFD05693.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius
           653-L]
          Length = 367

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 93/342 (27%), Positives = 173/342 (50%), Gaps = 12/342 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +  +   + +A + I  + TI +   +L    + +L +     E+ I   I AS
Sbjct: 1   MKLICGQKKLANAINNAQKAINNRTTIELLRGILFSTKEDMLTVTGYDNELCIETKIDAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN--ISHGDSNFYLQSFPESEF 118
           V   G I V++ L+ DI+RKL D + +S     E+  + N  IS  +S + ++     EF
Sbjct: 61  VSKAGKIVVNSKLVGDIIRKLPD-SMVSI----EVDEDYNMFISCLNSRYKIKGINAEEF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   + E     +   + +++++ +T FA A E +   L G    ++E  + + AV  DG
Sbjct: 116 PVVADLETEKMIKFNQAEMRHMIRQTVFATANEPVNPILAGELIEVSEGHINMAAV--DG 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLAV +  +    +   S+IVP   +  +  +LS  D    + +    I   + +  ++
Sbjct: 174 YRLAVRKSILEDSSSDDISVIVPGTTLNHLNSLLSD-DGDFYMGVDPKNIVFVLGNTKIT 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RL+DG F  Y +++P     ++ VN  NLR++V+R +++ SS +   +K+S+SS  + +
Sbjct: 233 ARLMDGNFTKYDSLLPKEYMSKVLVNTRNLRESVERAALLFSSEKNNIIKVSVSSGMMVI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           T +N + G A E +N+      ++I FN +Y L+ I NI S+
Sbjct: 293 TANNEN-GNAYEEINIELEGEDLEIAFNSRYFLDGIKNIDSE 333


>gi|33860561|ref|NP_892122.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633503|emb|CAE18460.1| DNA polymerase III, beta chain [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 385

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 200/400 (50%), Gaps = 32/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           M+I   +++    +    + +  + T P+  ++LL A+ G  +I  +G ++   I  +  
Sbjct: 1   MEIVCNQNEFNYAIQLVSKAVASRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V+  G+IT+ + LL +IV KL     +S    +E    + I     +F ++  P  ++
Sbjct: 61  ATVNKSGAITIPSKLLSEIVNKLPSETPVSL-DVDESSDNILIKSDRGSFNIKGIPSDDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS    E   S  +  S     ++ T FA ++++ +  L G+ F  N + L+  + ATDG
Sbjct: 120 PSLPFVESGTSLNIDPSSFLKALKLTIFASSSDDSKQLLTGVNFTFNLKYLE--SAATDG 177

Query: 179 HRLAVAEVD---------IVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAV  VD           A   +  S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVVLVDNKENFDEKEDFASNEENLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP +  K    N   + ++++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGSYPNYSQLIPDNFTKIFTFNTKKIIESLERIAVLADQQSSVVK 297

Query: 288 LSLSSDKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L+   L + + D  D+G A E + V +     DI FN +YLLE +  ISS     + V
Sbjct: 298 IKLNEKDLALVSADAQDIGNASELVPVSFYFDQFDIAFNVRYLLEGLKVISS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
           +F+ +   +   +  +D          +N+F Y++MP+++
Sbjct: 353 IFKCNLPTTPAVLVPED---------NINSFTYLVMPVQV 383


>gi|17158705|ref|NP_478216.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120]
 gi|17134654|dbj|BAB77212.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120]
          Length = 456

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 105/393 (26%), Positives = 188/393 (47%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK+++E+S + E+L  A   I  K T P+  ++LL AN DG++    +   + I     A
Sbjct: 1   MKLSIEQSKLAEILETAYFAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V+  G + + A LL D +  ++   +I+   EN+      I+H      L      EFP
Sbjct: 61  NVETSGQVALPAKLLTDTINNVR--GEITLEVENQACI---ITHNSGKCRLIGGKPDEFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E      L++  L+  +E T +    +E +  L G+ F I+    K  A +T+GH
Sbjct: 116 TLPKGENPIEVNLSAKKLQAALEGTLYCTNGDETKLVLTGVNFKIDTN--KWQAASTNGH 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSV-KVSLSESRIHLNIESLSM 237
           +LA+    + ++ +      VP K++ E+ +ILS S D+SV  + LS   I  ++    +
Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLSELSKILSQSADTSVCNILLSNKTIEFSLPHTKV 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295
             RL++GE+P   ++IP + + E  +       A+ RVS ++  + + VK+   L + + 
Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293

Query: 296 CMTVDNPDMGKAIES--MNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +  +  D+G A++S  M    N    + I  N  YLLE + +IS+     DE+V R + 
Sbjct: 294 TLYTEATDIGDAVDSVLMKPATNHSENISIGLNIDYLLEGLKHIST-----DEIVVRCNK 348

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               V I              +N  Y++MP+ I
Sbjct: 349 PTQPVIICP--------MGGLLNQLYLVMPVEI 373


>gi|88809363|ref|ZP_01124871.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805]
 gi|88786582|gb|EAR17741.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805]
          Length = 389

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 88/364 (24%), Positives = 178/364 (48%), Gaps = 29/364 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++P
Sbjct: 1   MKLVCSQTELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASVD  G++T+ A L  +IV +L   + I+    ++   +V ++    ++ ++  P  +F
Sbjct: 61  ASVDTSGAVTLPARLFGEIVSRLSSDSPIT-LATDDTSEQVELTSLSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   +  T FA +++E +  L G+  H+  +  +L A +TDG
Sbjct: 120 PDLPLVENGTAIKLDPAALVRALRSTLFASSSDEAKQLLTGV--HLRFDQTRLEAASTDG 177

Query: 179 HRLAV----------------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222
           HRLAV                AE D  A +A    + +P +++ E+ R+++    +  VS
Sbjct: 178 HRLAVLSVDDALKDAIAADDSAEADESAALA----VTLPARSLREVERLMAGWKGNDPVS 233

Query: 223 LSESRIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           L   R  + + +    V  R ++G +PNY+ +IP S  + + ++      +++R+++++ 
Sbjct: 234 LFFERGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTIGLDRRAFVASLERIAVLAD 293

Query: 281 VRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
                V++S    K  + ++ D  D+G   ES+        + I FN +Y+L+ +  +  
Sbjct: 294 QHNNVVRISSDPSKGLIQISADAQDVGSGSESLPAQIEGDEVQIAFNVRYVLDGLKAMDG 353

Query: 339 DEVV 342
           D +V
Sbjct: 354 DRIV 357


>gi|119492671|ref|ZP_01623850.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106]
 gi|119453009|gb|EAW34180.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106]
          Length = 391

 Score =  117 bits (294), Expect = 2e-24,   Method: Compositional matrix adjust.
 Identities = 100/409 (24%), Positives = 208/409 (50%), Gaps = 44/409 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           M+  VE+  +   L    R I  + T P+  ++LL+A      L + A    + I  ++ 
Sbjct: 1   MRFIVEQEKLSSNLSLISRAIPSRPTHPILSNILLEATAETQQLSLTAFDLSLGIYTSMS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESE 117
           A V+V G  T+ A LL DIV +L + + I+   +++ G  +  ++     + ++     E
Sbjct: 61  AEVEVGGRFTLPAKLLNDIVSRLPN-SPIAL--DDDAGESIITLNSSSGRYQVRGMGAEE 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+    E   S +L +  L   ++ T FA + +E +  L G+   I  E+L+  +  TD
Sbjct: 118 YPALPSIEDGESIQLPADALIEGLKGTLFATSPDETKQVLTGVHLKIQSENLEFAS--TD 175

Query: 178 GHRLAVAEVDIV-----------AQIAKMPSIIVPRKAVGEILRILSS-----KDSS--V 219
           GHRLAV + + +           A+I     + +P +A+ E+ R++++     +DS   V
Sbjct: 176 GHRLAVVKAESLNGDDQSEAISTAKIEDF-EVTIPARALREVERMIAAASPGKEDSKLMV 234

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           K+   ES++   + +  ++ R ++G +P YQ +IP     ++ V+  N   A++R+++++
Sbjct: 235 KLRFDESQVIFELGNQRLNSRKLEGSYPAYQQLIPNQFLNQINVDRRNFLGALERIAVLA 294

Query: 280 SVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNI 336
           S +   VK ++ +D  K+ ++V+  D+G A+ES++   + + P ++ FN KYL+E +  +
Sbjct: 295 SQKNDIVKCTIDNDNQKISLSVEAADVGNALESLSAQVSGDEPKELAFNVKYLMEGLKVL 354

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++      E+  +L+++ S V +         +    V   Y++MP+++
Sbjct: 355 NT-----SEIQIQLNAATSPVIL---------SPLGGVKMTYLVMPVQL 389


>gi|254424267|ref|ZP_05037985.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335]
 gi|196191756|gb|EDX86720.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335]
          Length = 344

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 80/291 (27%), Positives = 155/291 (53%), Gaps = 13/291 (4%)

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A VD  G+ T+ A LL DIV +L +   I   ++N+    V +S     + ++     ++
Sbjct: 27  AQVDESGTTTLPAKLLGDIVSRLPN-EDIDISEDNDEPV-VTLSCSAGRYQVRGLSAEDY 84

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  E E   + ++++  L   +    FA +++E +  L G+  H+   D  L   ATDG
Sbjct: 85  PNLPEIESTDTVKISADALVEGLRGALFATSSDETKQVLTGV--HLTAMDESLEFAATDG 142

Query: 179 HRLAVA----EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS--VKVSLSESRIHLNI 232
           HRLAV     E        +M ++ +P KA+ E+ RIL +  SS  V + L E+++  ++
Sbjct: 143 HRLAVVNTIDETGTSTPDLEM-NVTIPGKALRELERILQAYPSSEPVALKLDETQVVFDL 201

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
               ++ RL+DG++PNY  +IP   +++L ++      +++R+ +++  R   VKL++S+
Sbjct: 202 GRQRITTRLLDGQYPNYNQLIPKQFERQLTLDRKQFVSSLERIGVIADQRNNIVKLTISN 261

Query: 293 DK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +  L ++V+  ++G  +E++        +DI FN +YLLE +  + + E+
Sbjct: 262 TQQSLALSVEAQEVGSGLENLPAQVTGDDLDIAFNVRYLLEGLKALPTSEI 312


>gi|224541289|ref|ZP_03681828.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525793|gb|EEF94898.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM
           15897]
          Length = 367

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 170/344 (49%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R  +L+ L    R +  K+ +P+   +     +  L + AS  +I I   I   
Sbjct: 1   MDFNINRLVLLDALTKVSRAVSLKSPLPILTGIKFDLLEDGLVLTASDSDISIQTTINEG 60

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           + +   GS+ +S+  + +I+RK+ DG  +     +  GT   I+   S F L      +F
Sbjct: 61  IIINQTGSVVLSSKYILEIIRKI-DGDTVHIQVVD--GTLTRITSESSLFDLNGSKSFDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +    F + S   K ++E+T FA + +E R  L G+ F +++   KL  +ATD 
Sbjct: 118 PRIDLNKNGKHFSMKSYEFKKIIEKTLFATSEQETRPVLTGVNFKVDQH--KLVCIATDS 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA     I   I    +I++P+K++ +I+ I+  KD  + + +S+ ++   I    + 
Sbjct: 176 YRLAQVSQPIDDDIQF--NIVIPKKSLNQIIHIIE-KDEMIDLYVSDRKVLFVIGQYLVL 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG +PN   ++       + +N + L  A+ R S++S  +   VKL++S D+  ++
Sbjct: 233 TRLIDGTYPNTSRLVEDQGSYTMSINSSALLGAISRASLLSDEQSNIVKLTMSPDENILS 292

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
             + ++G   E++   +Y   PM I F+ KYL + I +I ++ +
Sbjct: 293 SYSQEIGSVEENLTKAFYKGEPMTISFSAKYLADAIRSIGTETI 336


>gi|267847165|gb|ACY80723.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 104/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58
           I ++  +    L     I+E+KN   +  +V L   ND +   LEI A+  +I I   +P
Sbjct: 20  IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79

Query: 59  ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
             +     SIT+    L +IV+K+  D   I   ++N++   V I  G+   F L + P 
Sbjct: 80  IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKI---VQIKGGEYLEFNLATLPI 136

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173
           + FP  +E  +  +   + +  L  ++E T FA++TEE RY LNGI+ H   +D K L A
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225
           VATDGHRLA A+ +I      + +     +I+PRK + E+ +I    S    +V + +  
Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           ++I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + 
Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324
           V L L    + ++       KA E +                       Y  +  + + F
Sbjct: 315 VILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAF 374

Query: 325 NYKYLLEII 333
           N KYLL+++
Sbjct: 375 NAKYLLDVL 383


>gi|15805043|ref|NP_293727.1| DNA polymerase III subunit beta [Deinococcus radiodurans R1]
 gi|6457660|gb|AAF09595.1|AE001864_1 DNA polymerase III, beta subunit [Deinococcus radiodurans R1]
          Length = 393

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 91/348 (26%), Positives = 177/348 (50%), Gaps = 28/348 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V +  + E LG   R+I  +++ P+   + ++ ++G L +  +  EI+++  +PA 
Sbjct: 2   MKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAE 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQS-----FP 114
           V    +  V AHL   IVR L  G ++    E EL G E+++  G S+F LQ+     +P
Sbjct: 62  VQQPENFVVPAHLFAQIVRNL--GGELV---ELELSGQELSVRSGGSDFKLQTGDIEAYP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              FP+  +        L    L        +A + E  +    GI    + E  ++  V
Sbjct: 117 PLSFPAQAD------VSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARV--V 168

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+DG+R+A+   D  A      ++I+P ++V E++R+L  KD   + +  +  + +  + 
Sbjct: 169 ASDGYRVAIR--DFPAS-GDGKNLIIPARSVDELIRVL--KDGEARFTYGDGMLTVTTDR 223

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293
           + M+++L+DG+FP+Y+ VIP     ++ +  T L++AV+RV++++       V+  +S  
Sbjct: 224 VKMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEG 283

Query: 294 KLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSD 339
            L +  +  D G+A ++++V     E  M + FN +++L+ +  I  D
Sbjct: 284 TLRLAAEG-DYGRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDGD 330


>gi|166366608|ref|YP_001658881.1| DNA polymerase III subunit beta [Microcystis aeruginosa NIES-843]
 gi|166088981|dbj|BAG03689.1| DNA polymerase III beta subunit [Microcystis aeruginosa NIES-843]
          Length = 382

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 98/355 (27%), Positives = 180/355 (50%), Gaps = 19/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK T  +S++   L    R +  + T PV  +VL  A++  G + + A    + I  +  
Sbjct: 1   MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L +G      +ENE   E +++      + F ++    
Sbjct: 61  AEVVEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH---FAMATEEIRYYLNGIFFHINEEDLKLC 172
            EFP   E   V   E+ +  +  L E      FA + +E +  L G+  H+ +    L 
Sbjct: 121 DEFP---ELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGV--HLTKTVDCLE 175

Query: 173 AVATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRI 228
             ATDGHRLAV +  +  V   +   ++ +P +A+ E+ R++++K +  ++ + + +S++
Sbjct: 176 FAATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQV 235

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
              +    ++ R ++G +P Y  +IP S D+ L ++   L + ++ V+++S  +   VK 
Sbjct: 236 IFEMGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKF 295

Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           SL S  D+L + V++PD+G A ESM         DI FN KYL++ +  + ++++
Sbjct: 296 SLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 350


>gi|116491820|ref|YP_803555.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116101970|gb|ABJ67113.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 379

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 84/301 (27%), Positives = 150/301 (49%), Gaps = 15/301 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  ++ L    R I  K TIP+   + ++A +  L +  S  +I I   I  +
Sbjct: 1   MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIEAEEDRLILTGSNTDISIETTISTN 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G++ ++A    DIV+KL D   +   K+   G +  I+ G S F +   
Sbjct: 61  DEEAHLNIESTGAVVLTARFFGDIVKKLPDNTMLLEVKD---GFQTTITSGASEFKINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + FP   E +   +  L + V   ++  T  A++ +E R  L GI F I  E  KL A
Sbjct: 118 DANNFPHLPEVDSQTTITLKADVFSEMINETVIAVSNQESRPILTGIHFTI--EGNKLSA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRL+   +++   I KMP  II+P K++ E+ R+L  +  ++ + +SE++     
Sbjct: 176 VATDSHRLSQRVINLPEPI-KMPEDIIIPGKSLLELSRMLDDEIDTITLQISENQALFTF 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +      RL++G +P+   +IP  +  E+      L  +++R S++S   R   VKL+++
Sbjct: 235 DETLFYSRLLEGLYPDTSRLIPKESSTEMEFEAPELLASIERASLLSHAGRNNVVKLTIN 294

Query: 292 S 292
           +
Sbjct: 295 A 295


>gi|167770839|ref|ZP_02442892.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM
           17241]
 gi|167666879|gb|EDS11009.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM
           17241]
          Length = 367

 Score =  117 bits (293), Expect = 3e-24,   Method: Compositional matrix adjust.
 Identities = 85/341 (24%), Positives = 166/341 (48%), Gaps = 7/341 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++  ++  +++ + +  R +  KNT+     VLL+A +  L +     E+ I+  I A 
Sbjct: 1   MQLICDKQLLVDAVANVSRAVSSKNTLAALEGVLLRAKNNTLSLTGYDLELAISTEIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I +SA +  D++R++    QIS   + ++ T V  S   + + +   P SE+P 
Sbjct: 61  VREAGEIVLSARIFLDMIRRMPS-EQISISSDAKMLTLVKGSM--TEYTILGLPASEYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +  + LKN++ +T FA+A  + +    G  F I   +L  C V+ DG+R
Sbjct: 118 LPGVSETTELSIPQAALKNMISQTLFAIAVSDSKPVHTGSLFDIKGGEL--CLVSVDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +     +  S IVP K++ E+ ++L  ++  V++ ++   I     S  +  R
Sbjct: 176 LALRREKVA--FDETLSFIVPGKSLSEVSKLLRDEEGDVELGVARRHIIFRTGSYRIVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GEF +Y+  IP      +++   +L  A+DR S++ S  I++       + L     
Sbjct: 234 LLEGEFLDYRAAIPEGGATTVKIGTRDLISAIDRASLLISDNIKSPLRMKFEEGLIKISC 293

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +GKA + +    +   ++I FN +Y+L+ +     DE+
Sbjct: 294 STAIGKAYDEIRCEQSGDDVEIGFNSRYMLDALKASEGDEI 334


>gi|209523424|ref|ZP_03271979.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328]
 gi|209496166|gb|EDZ96466.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328]
          Length = 393

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 99/409 (24%), Positives = 201/409 (49%), Gaps = 42/409 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           M++ VE+  +   L    R I  + + P+  ++L++A+     L + A    + I  + P
Sbjct: 1   MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINTSFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V   G +T+ A LL DIV +L  G  I    E E    V ++     + ++     E+
Sbjct: 61  AQVQQGGVLTLPAKLLNDIVSRL-PGGDIQVDDE-ETEAVVTLTSSSGRYQVRGMVAEEY 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E  +S +LA+  L   ++ T FA + +E +  L G+   + ++   LC  +TDG
Sbjct: 119 PDLPSVEGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFASTDG 176

Query: 179 HRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSS---------------V 219
           HRLAV +V+ V    +Q  +   I +P +A+ E+ R++ S +S+               V
Sbjct: 177 HRLAVVKVENVRDPNSQEPENLEITIPARALREVERMIVSANSARHSAATEEESTTPPMV 236

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            +   ++++   + +  ++ R ++G +P Y+ +IP     ++ V    L  A++R+ +++
Sbjct: 237 TLGFDDTQVVFELGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLAALERIGVLA 296

Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNI 336
           S +   VK  +   + ++ ++V+  D+G A+ESM    + E P ++ FN KYL++ +  +
Sbjct: 297 SQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLKVL 356

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S      E+  +L+++++ V I         N    +   Y++MP+++
Sbjct: 357 NS-----SEIQIQLNAASTPVII---------NPFGGLKMTYLVMPIQL 391


>gi|167753684|ref|ZP_02425811.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216]
 gi|167658309|gb|EDS02439.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216]
          Length = 374

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/389 (26%), Positives = 188/389 (48%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK +V  S +L LL    ++I  KNT+P+  + L++     L +  S  E  + G+I   
Sbjct: 1   MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-NELGTEVNISHGDSNFYLQSFPESEF 118
            V+  G+I   A L+ D    L++ A++    E N+   E+ +S    +  +       +
Sbjct: 61  GVESEGTIAAPAKLMLD---SLKEFAEMPLTIEVNDQNWEIRLSWKSGSLSIPGASAVSY 117

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+            L   VL N + +T FA A +E+R  +NG++  IN     L  V TD
Sbjct: 118 PAIPALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVY--INLAPSMLTFVGTD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            H+L   EV+   ++A   S I+P+K    +  +L  ++ ++KVS         +++ ++
Sbjct: 176 AHKLVKYEVETANEVAS--SFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+G +PNY  VIP +N  ++ V+   L   + RV++ S+     +++ ++ +++ +
Sbjct: 234 VCRLIEGNYPNYNAVIPTANPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRINL 293

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           T  + D    A E+++  Y    + I F   +L+EI+ NI +  +    V+   DS+ + 
Sbjct: 294 TAQDIDFSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPTI----VIELADSTRAG 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           VF     K   ++K +      +LMPM I
Sbjct: 350 VF-----KPVYDDKQSSA-TLMLLMPMMI 372


>gi|312897427|ref|ZP_07756851.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis
           F0359]
 gi|310621488|gb|EFQ05024.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis
           F0359]
          Length = 372

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 191/390 (48%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+ +++ D    L    ++   K N +     +L++A +  +EI+A+  ++ I   IP 
Sbjct: 1   MKLKIQKEDFTRALQSVQKVASNKSNNLSSENGLLIKAINDNIEIQANDYDMGIKTTIPG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G + +    L ++ R++   ++     +++  ++++I  G   +   +    +F 
Sbjct: 61  IIEESGEVFLWDPHLSELTRRI--ASEEIILTKSDSDSQMSIEGGKLKYRYMTMNTEDFN 118

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +  E  Y SF   S +LK+L++ T +A AT+  R    G F  ++ + L +  VATD 
Sbjct: 119 EVEVVEQGYASFTTDSVILKDLIDNTSYACATDTSRPVFTGTFLDVSGKSLSM--VATDT 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLS 236
           HRLA+  V +          I+P + + E+ R L + D  V V ++  R +L I+  ++ 
Sbjct: 177 HRLALKSVTLDQPSTGDIQAIIPGRLLSEVARQLPT-DVPVVVKITAVRNYLAIQFGNVY 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKL 295
           +  RLI+G FP+Y+ VIP      + +  ++   AV+R+SI++   +   +   ++ +++
Sbjct: 236 IRTRLIEGTFPDYKRVIPTEFSNIITIRRSDFTAAVERISIVAKDAQYNVINFDMADNQI 295

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            M   +PD G   +S+  +     P+ I FN +++L+++ + S DE      +F     N
Sbjct: 296 HMNSQDPDHGVVEDSVECIMSGGNPLSISFNGRFILDVLKHCSKDE------IFLKCREN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S + I+ KD           N  +V+ PMR
Sbjct: 350 SPMLIQDKDTG---------NCVFVVTPMR 370


>gi|267847159|gb|ACY80720.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
 gi|267847167|gb|ACY80724.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58
           I ++  +    L     I+E+KN   +  +V L   ND +   LEI A+  +I I   +P
Sbjct: 20  IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79

Query: 59  ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
             +     SIT+    L +IV+K+  D   I   ++N++   V I  G+   F L + P 
Sbjct: 80  IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKVGEYLEFNLATLPI 136

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173
           + FP  +E  +  +   + +  L  ++E T FA++TEE RY LNGI+ H   +D K L A
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225
           VATDGHRLA A+ +I      + +     +I+PRK + E+ +I    S    +V + +  
Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           ++I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + 
Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324
           V L L    + ++       KA E +                       Y  +  + I F
Sbjct: 315 VILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAF 374

Query: 325 NYKYLLEII 333
           N KYLL+++
Sbjct: 375 NAKYLLDVL 383


>gi|198274685|ref|ZP_03207217.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135]
 gi|198272132|gb|EDY96401.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135]
          Length = 405

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 94/345 (27%), Positives = 174/345 (50%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  +N++P+    L +  DG L + AS  +  ++ +I  +
Sbjct: 32  MKFIVSSTALFSHLQAISRVINSRNSLPILDCFLFELRDGTLFMTASDNDTTLSTSIEVN 91

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  L + ++++ +   +SF  E     E+ + + +  + L      E+P
Sbjct: 92  ESDSDGRFAVSSKTLLEALKEIPE-QPLSFHIEPS-NMEITVEYLNGKYSLMGQNADEYP 149

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +          + + +L N V R+ FA A +E+R  +NGI+F I+ ED+ L  VA+DG
Sbjct: 150 QAQALGSNAVQVTMGAEILMNGVNRSLFATADDELRPVMNGIYFDISTEDITL--VASDG 207

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +    A+ A+  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 208 HKLVRCKT-YAARGAEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 266

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N     ++      A+ RVS+ SS     +KLSLS +++ ++
Sbjct: 267 CRLIEGRYPNYNSVIPQNNPHRAIIDRALFISALRRVSVFSSQSSSLIKLSLSENQMKIS 326

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             + D    A E++   Y   PM I F   +L++I++NIS+  ++
Sbjct: 327 AQDIDFSTSAEETIACQYGGNPMSIGFKSSFLIDILNNISAQNII 371


>gi|158336234|ref|YP_001517408.1| DNA polymerase III subunit beta [Acaryochloris marina MBIC11017]
 gi|158306475|gb|ABW28092.1| DNA polymerase III, beta subunit [Acaryochloris marina MBIC11017]
          Length = 372

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 88/347 (25%), Positives = 174/347 (50%), Gaps = 13/347 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++SD+   L    R++    T PV  +VLL A    L +      + I   I A 
Sbjct: 1   MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++T+ A  L DIV +L +   I    ++   T V ++    ++ +Q     EFP 
Sbjct: 61  VEETGALTLPARFLNDIVSRLPN-CDIEVETDD---TAVTLTCDSGHYQMQGLVAEEFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + + + +L + V    ++ T FA +T+E +  L G+  H+N  +       TDGHR
Sbjct: 117 LPSLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGL--HLNTSESGFEFATTDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLS-- 236
           LA+A    +     M ++ +P KA+ E+ R+L   + D +++   +++   L  E  +  
Sbjct: 175 LAIANFPDLVTPEPM-TMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTER 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DK 294
           +S RL++G++P Y  ++P   ++++ V    L  +V+R++++++ +   ++L + S    
Sbjct: 234 LSCRLLEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQN 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + ++ + P++G   E +    +   +DI FN KYL + +  + S EV
Sbjct: 294 VALSAEAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQEV 340


>gi|189184479|ref|YP_001938264.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str. Ikeda]
 gi|189181250|dbj|BAG41030.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Ikeda]
          Length = 432

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 105/369 (28%), Positives = 183/369 (49%), Gaps = 43/369 (11%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHV-LLQANDGL---LEIKASGPEIEITGAIP 58
           I ++  +    L     I+E+KN   +  +V L   ND +   LEI A+  +I I   +P
Sbjct: 20  IKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKLP 79

Query: 59  ASVDVCG-SITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
             +     SIT+    L +IV+K+  D   I   ++N++   V I  G+   F L + P 
Sbjct: 80  IKISKNDISITLPLQALNEIVKKIPHDEFTIYCNQDNKM---VQIKVGEYLEFNLATLPI 136

Query: 116 SEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-LCA 173
           + FP  +E  +  +   + +  L  ++E T FA++TEE RY LNGI+ H   +D K L A
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH--SKDYKSLIA 194

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRIL---SSKDSSVKVSLSE 225
           VATDGHRLA A+ +I      + +     +I+PRK + E+ +I    S    +V + +  
Sbjct: 195 VATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKS 254

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           ++I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + 
Sbjct: 255 NKIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKI 314

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESM---------------------NVYYNECPMDICF 324
           V L L    + ++       KA E +                       Y  +  + I F
Sbjct: 315 VILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAF 374

Query: 325 NYKYLLEII 333
           N KYLL+++
Sbjct: 375 NAKYLLDVL 383


>gi|329116060|ref|ZP_08244777.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906465|gb|EGE53379.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD
           2020]
          Length = 378

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 177/352 (50%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ RS  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S
Sbjct: 2   IQFSINRSLFIQALNATKRAISSKNAIPILSTIKIEVNQENITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A+   +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLISSTGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171
               ++P  +E        L + +LK+++  T FA + +E R  L G+   + N +D K 
Sbjct: 118 KDVEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASLQESRPILTGVHITLSNNKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++   + +  + A    +++P K++ E   +      +V++  S S+I   
Sbjct: 177 -AVATDSHRMSQRLLSL-EKSANNFDVVIPSKSLREFSSVFGDDIETVEIFFSPSQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL +
Sbjct: 235 SEHISFYTRLLEGNYPDTDRLLMNQFETEVVFNTQSLRHAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +++++   V++P++GK  E ++ V  +   + I FN  YL+E +  + SD V
Sbjct: 295 AANEVTAHVNSPEVGKVNEELDTVEKSGNDLTISFNPTYLIESLKALKSDTV 346


>gi|148241100|ref|YP_001226257.1| DNA polymerase III subunit beta [Synechococcus sp. RCC307]
 gi|147849410|emb|CAK26904.1| DNA polymerase III beta subunit [Synechococcus sp. RCC307]
          Length = 379

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 103/393 (26%), Positives = 185/393 (47%), Gaps = 24/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R I  + T PV  +VL+ A+     I  +G ++   I  +  
Sbjct: 1   MKLVCSQAELNGSLQLVSRAIAGRPTHPVLANVLVTADAAAGRISLTGFDLSLGIQTSFA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           A V+  G+IT+ A L  DIV +L  DG       E E  TE++   G  ++ ++     +
Sbjct: 61  AVVESSGAITLPAKLFTDIVSRLPADGPLTLACPEGEEQTELSALTG--SYQMRGLSAED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     +      L+       +  T FA + +E +  L GI  H+  ED  L   ATD
Sbjct: 119 FPDLPLAQNGQPLLLSGEAFAEGLRSTLFASSGDESKQILTGI--HLKVEDGGLEFAATD 176

Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIES 234
           GHRLAV       Q  A+  ++ VP +++ E+ R+LS++ S   +SL     ++      
Sbjct: 177 GHRLAVRRNGAGGQEGAESFAVTVPARSLRELERLLSARPSEESISLFCDRGQVVFLWAD 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SS 292
             ++ R ++G +PNY  +IP S  + + +       A++R+++++      VKL+   +S
Sbjct: 237 QVLTSRTLEGTYPNYGQLIPESFARTISLERKPFIAALERIAVLADQHNNVVKLTADPAS 296

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +L ++ D  D+G   ES+    N   + + FN +YLLE +  ++     D  V   L+S
Sbjct: 297 GQLQLSADALDVGSGSESLAAQINGEEIAMAFNVRYLLEGLKAMA-----DATVRLNLNS 351

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S   +         ++D +    Y++MP++I
Sbjct: 352 PTSPAVL-------SADEDGEAGFTYLVMPVQI 377


>gi|297616216|ref|YP_003701375.1| DNA polymerase III subunit beta [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144053|gb|ADI00810.1| DNA polymerase III, beta subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 382

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 102/402 (25%), Positives = 187/402 (46%), Gaps = 42/402 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGL------LEIKASGPEIE 52
           MK ++ + ++  +     R    + T+PV   +LL+A+   GL      LEI  S   +E
Sbjct: 1   MKFSINQPELARVAALVQRAASTRETVPVLSGLLLKASATTGLSMTCTDLEIALSAHTLE 60

Query: 53  ITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A+V   G+  V+A    D+VR L +  +I    ++E  + + +++G S  +L  
Sbjct: 61  ------ANVIEEGTALVNARYFADLVRYLPN-IEIQVLTDDE-NSRLTVNYGRSQTHLHL 112

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +   EFP T  +E      +    LK L+ +T FA A    +    G+ F    + L++ 
Sbjct: 113 YNPQEFPETGRQEPTPLLSVPQKTLKELLRKTSFAAAVNHFKQVFTGVLFDFTPDQLRV- 171

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VA+D HRLA+  + + +   +   +++P + V E++RIL   +  V   L+ + I    
Sbjct: 172 -VASDTHRLAMMSLAMSSTHTEPRQLVIPSRTVAELIRILEDSEKEVSCGLAGNNIVFTC 230

Query: 233 E--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM------SSVRIQ 284
           E     ++ RL++G++PNY  VIP +    +++    L  A++R  +M      S   I+
Sbjct: 231 EEPGFQLTSRLLEGQYPNYLPVIPGNFVSTVKLEPGPLANALERAVLMPTDKQSSKQPIR 290

Query: 285 AVKLSLSSDKLCMTVDNPDMG---KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            V L L   +L ++  +  MG   + +E ++V   E  + I FN +YLL++I  +  +  
Sbjct: 291 HVTLELKDRELRVSAYSQKMGELQEVLEDISV-EGESNIQISFNTRYLLDVIKVLQGECT 349

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
               +  +   S S   I+   KD         +  YVL+P+
Sbjct: 350 T---ISLKFTGSLSPALIQDPCKD---------DYLYVLVPL 379


>gi|323345728|ref|ZP_08085951.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis
           ATCC 33269]
 gi|323093842|gb|EFZ36420.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis
           ATCC 33269]
          Length = 374

 Score =  117 bits (292), Expect = 4e-24,   Method: Compositional matrix adjust.
 Identities = 98/345 (28%), Positives = 161/345 (46%), Gaps = 8/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  S +   L    R+I  KN++P+    L +   G L I AS  E  +  ++   
Sbjct: 1   MRFTLSSSALNGHLQTLARVINSKNSLPILDCFLFEVAGGKLNITASDSENVMRSSVQLD 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  +    + D V++L +         + L  +V   +G  +F  Q     E+P
Sbjct: 61  ESDTEGSFAIPNRTILDAVKELPEQPLTFDVDTSNLTIKVLYQNGMYSFTAQH--ADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+   +      + S+VL + + R+ FA A +E+R  +NGI+F +  + L +  VA+DG
Sbjct: 119 RTQPMPDGATVVTIDSAVLNDNISRSLFATAQDELRPVMNGIYFDLTADSLAI--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     + I+P+K    +  ILS     V +   E    +      +S
Sbjct: 177 HKL-VRNKNFTIKSDTPAAFILPKKPATLLKNILSKDGGDVVIKFDERNAEIQYAGGILS 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N   L ++   L  A+ RV   +S   Q V+  L + KL +T
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPNLLTIDRRTLLGALRRVLPFASESSQLVRFHLEAGKLELT 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++ D    A E++   Y    M I F    L EI+ N+ SDEV 
Sbjct: 296 SEDVDFATSAKENITCDYTGQTMSIGFKGSSLSEILTNLDSDEVT 340


>gi|229824636|ref|ZP_04450705.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271]
 gi|229786007|gb|EEP22121.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271]
          Length = 404

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 96/342 (28%), Positives = 164/342 (47%), Gaps = 21/342 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  ++ R   +  L H  R I  K  IPV   + L+     L +  S   I I   I  S
Sbjct: 22  MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   GSI +SA L  DIVRKL    Q+    ++     V ++ G + F +Q  
Sbjct: 82  QEAAQLQVTTPGSIVLSARLFIDIVRKLPTN-QVEIQVQDHY--NVQLTSGKAVFTIQGV 138

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             S++P   E +      L   + K L+ +T F+ + +E R  L G+  +++  D  L  
Sbjct: 139 DSSQYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGL--NLSFHDGYLTG 196

Query: 174 VATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRL+  ++ I  +    K  +I +P+K V E+ RIL   +S+V   +   ++  +
Sbjct: 197 VATDSHRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDD-ESNVTFYVMAQQLVFH 255

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
            ++L +  RL++G FP+   +IP + + EL VN  +  QA++R +++  V +   V+L +
Sbjct: 256 FDNLVIYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKM 315

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMD---ICFNYKYL 329
           S   + + V    +G++ E ++  Y+    D   I FN  Y+
Sbjct: 316 SQGSVALLVQGISIGQSTEELS--YDSLEGDDLTIAFNPDYM 355


>gi|270289891|ref|ZP_06196117.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4]
 gi|304385856|ref|ZP_07368200.1| DNA-directed DNA polymerase III beta subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270281428|gb|EFA27260.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4]
 gi|304328360|gb|EFL95582.1| DNA-directed DNA polymerase III beta subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 379

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 89/313 (28%), Positives = 154/313 (49%), Gaps = 17/313 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+ R+  ++ L    R I  K TIP+   + ++A    L +  S  +I I   I   
Sbjct: 1   MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIKAEADQLVLTGSNTDISIETTISVN 60

Query: 59  ---ASVDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
              A +D+   G I ++A    DIV+KL D   +    E   G +  I+ G S F +   
Sbjct: 61  DPDAELDIEQTGDIVLTARFFSDIVKKLPDNKMLV---EVSDGFQTTITSGASEFKINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + FP   E +   +  L + V   ++  T  A++ +E R  L GI F I  E+ KL A
Sbjct: 118 DANNFPHLPEVDSQTTITLQADVFSEMINETVIAVSNQESRPILTGIHFTI--ENNKLTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRL+   +++  +  KMP  II+P K++ E+ R+L  +  ++ + +SE++     
Sbjct: 176 VATDSHRLSQRIINL-PEAVKMPEDIIIPGKSLLELSRMLDEEIDTITLQISENQALFTF 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290
           +      RL++G +P+   +IP  +   +      L  +++R S++S   R   VKL++ 
Sbjct: 235 DETLFYTRLLEGLYPDTSRLIPKESTTAMEFEAPELLASIERASLLSHAGRNNVVKLTIN 294

Query: 291 -SSDKLCMTVDNP 302
            ++ K  +T D+P
Sbjct: 295 AAAKKAIITGDSP 307


>gi|313885457|ref|ZP_07819207.1| DNA polymerase III, beta subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619187|gb|EFR30626.1| DNA polymerase III, beta subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 384

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 86/340 (25%), Positives = 170/340 (50%), Gaps = 17/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55
           MK T+ R    ++L +  R I  K TIP+   + ++ N   + +  S  +I I       
Sbjct: 1   MKFTINRQKFTDVLNNVSRAIPGKTTIPILTGIKIEVNPDGVTLIGSDADISIESFLSNQ 60

Query: 56  --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
             ++  ++   GSI V A L  DI+RKL          E++    + I+ G + F L   
Sbjct: 61  DESLQLNIKEQGSIVVGARLFNDIIRKLPTN---EILLESDSNYLLTITSGPAVFTLNGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E ++  +  L +   K ++  T F+ + +E R  L G+   I+ +   +  
Sbjct: 118 DGAAYPHLPEIDFENTVSLPTLAFKEMINHTIFSASNQESRPILTGLNLSIHPD--YISG 175

Query: 174 VATDGHRLAVAE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRL+  E  V++   +  + ++ +P+K V E++RI+   D  +++ ++E ++   
Sbjct: 176 VATDSHRLSRREIPVELNTDLLDLTNVTIPKKTVTELVRIVED-DQKLQMLVNEQQVIFI 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           +E+L++  RL++G +P+   +IP ++  +L VN  +   A++R S+MS   +   V+LS+
Sbjct: 235 LENLTIYSRLLEGNYPDTDRLIPSNHQTQLVVNANDFLAAIERASLMSHQSKNNIVQLSI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYL 329
               + ++V   + G+A E + +   +   + I FN  Y+
Sbjct: 295 KDQAVELSVSGNERGRASEDIQLKAVSGQDLLISFNPDYM 334


>gi|120401030|ref|YP_950859.1| DNA polymerase III subunit beta [Mycobacterium vanbaalenii PYR-1]
 gi|119953848|gb|ABM10853.1| DNA polymerase III, beta subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 398

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 181/402 (45%), Gaps = 34/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R D  + +    R +  + T+PV   VLL  +D  L I     E+     IPA 
Sbjct: 12  LKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTISGFDYEVSAEVQIPAE 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   GS+ VS  LL DIVR L     +    E   GT V+++ G + F L + P  ++  
Sbjct: 72  IASPGSVLVSGRLLSDIVRALP-AKPVDVSVE---GTRVSLTCGSARFSLPTMPVEDYPT 127

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+  +E  V S    S +    + +   A   ++    L GI   I+ E  K+   ATD
Sbjct: 128 LPTLPDETGVVS----SDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATD 181

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIH 229
             RLAV E+      A +  +++VP K + E  +   +  + V ++L        E  + 
Sbjct: 182 RFRLAVRELTWSTGAAGVEAAVLVPAKTLAEAAKA-GTDGNEVHLALGAGPSVGKEGLLG 240

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  +    + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++ 
Sbjct: 241 IRSKGKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVAD-RGAQVRME 299

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +   L ++    D+G+A E + V ++  P+ I FN  YL + + ++ +     + V F 
Sbjct: 300 FADGVLRLSAGADDVGRAEEDLPVEFSGDPLTIAFNPTYLTDGLSSLHA-----ERVTFG 354

Query: 350 LDSSNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
             + +    +R   +D      +      + +  Y+LMP+R+
Sbjct: 355 FTTPSRPAVLRPAAEDDGGAGGSGPFPAAQTDYVYLLMPVRL 396


>gi|81427618|ref|YP_394615.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609257|emb|CAI54304.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 379

 Score =  116 bits (291), Expect = 5e-24,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 173/354 (48%), Gaps = 18/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R+  ++ L    R I  K TIP+   + L  +   L +  S  +I I   + AS
Sbjct: 1   MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  G I + A    +IV+KL +  Q+     N   T   I  G S F +   
Sbjct: 61  DEKNQLVVEEVGEIVLPARFFSEIVKKLPED-QMRIAVGNNFQT--TIRSGKSEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +F +++ VLK L+ +T  A++ +E R  L G+  H+   + ++ A
Sbjct: 118 DANSYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGV--HLVLANGEMLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA  ++ +         +I+P K++ E+ R L+     V++ ++E+++     
Sbjct: 176 VATDSHRLAQRKLPVALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           +L+   RL++G +P+   +IP S+  ++  N   L  A++R S++S   R   V+L+L +
Sbjct: 236 NLAFYSRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDT 295

Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVV 342
           +     +  ++PD+G   E++  + N     ++I FN  Y+ + + +     +V
Sbjct: 296 EANTAIIYGNSPDVGNVEEALQ-FENLTGESLEISFNPDYMKDALRSFGQTTIV 348


>gi|298246028|ref|ZP_06969834.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553509|gb|EFH87374.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 379

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 169/351 (48%), Gaps = 14/351 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ D+   L      +  ++T+P+  ++LL  + G L++ A+  EI I   I A 
Sbjct: 1   MKIICKQQDLSRGLSTVSHAVSSRSTLPILANILLTTDHGRLKLSATNLEIGINCWIDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS TV A  + D+V  L+  +Q+     +E  T ++I    SN  ++    SEFP 
Sbjct: 61  VQEEGSTTVPAKTISDLVSSLRP-SQVELSVADESHT-MSIKGQGSNATIKGMDPSEFPL 118

Query: 121 TKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               E   +   L +  LK ++E   FA A ++ R  L G+  H+   + KL   A D  
Sbjct: 119 IPSAEGSETPIALDAHQLKEMIEYVAFAAADDDTRPVLTGV--HVETTNEKLTFAAADAF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMS 238
           RLAV    +        +I++P + + E+ RIL ++ S  + V+ + S++  + +++ + 
Sbjct: 177 RLAVMSAPMPGGDLLADTILIPARTLTELARILPNEGSVQMIVTPNRSQVLFHTDNVDLV 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSD--- 293
            RLI+G FPN++ +IP  +     V       AV  V+  +  S  I  VK++  S+   
Sbjct: 237 SRLIEGTFPNFRGIIPKEHTTRAVVETKEFSAAVKTVTPFARDSSNIARVKVNSGSEDGN 296

Query: 294 ---KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
               L +     D+G  + ++N   +    +I FN KYL +++  + + EV
Sbjct: 297 ETGTLTIEATAEDIGSNVSTINAAVDGPEQEIIFNVKYLSDVLGVVGTPEV 347


>gi|319642216|ref|ZP_07996875.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
 gi|317386072|gb|EFV66992.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
          Length = 372

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 190/393 (48%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+I V ++ +L+ L    RII+ KN +P   + L   ++ G +++ A     E  G I  
Sbjct: 1   MEILVSKTALLDKLKSVGRIIQPKNILPAYDNFLFVIDESGFIQVTAG----EEGGRIST 56

Query: 60  SVD-----VCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSF 113
           +VD     V  S   SA  L D ++++ +    IS +++     E+ + + +  F +   
Sbjct: 57  NVDGKADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEK-----EMVVKYANGKFTMPIE 111

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P    ++  +SF L+ + L   V +  F  A +E+R  +NG++F I+ E  K   
Sbjct: 112 DGKQYPEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSY 169

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V TDG RLA+ E+       +    I+P K    +  ++      ++V ++ + +  + +
Sbjct: 170 VGTDGSRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFD 229

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S  +  R+I+G +PNY+ VIP +  K + +   +L  A+ RVS+  ++    V L     
Sbjct: 230 SYRLVCRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKS 289

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            L +T  + D  K+ E   +  + C  ++I F   +L+E++++I S+++     +   D 
Sbjct: 290 SLLITAHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPSEDI----SISMTDP 345

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S ++V  R  +++         +  Y+LMPM I
Sbjct: 346 SRAAVLSRCDEEER--------SLTYLLMPMSI 370


>gi|260912252|ref|ZP_05918804.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260633686|gb|EEX51824.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 349

 Score =  116 bits (291), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 92/322 (28%), Positives = 164/322 (50%), Gaps = 14/322 (4%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGA 85
           +P+  + L +  DG+L +  S  E  +  ++     D  G  TV +  + D  R+L D  
Sbjct: 1   MPILNNFLFEIVDGVLTLTTSDSETTMKASMQLDESDSNGRFTVPSRTILDATRELPD-- 58

Query: 86  QISFFKEN--ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKNLVE 142
           Q   F  N   +  ++   +G  NF  Q+    E+P  KE      S ++ S+VL N + 
Sbjct: 59  QPLHFDINLETMAVQITYQNGVYNFTAQT--AEEYPRNKELAADAASIQMESAVLLNSIV 116

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
           R+ FA   +E+R  +NGI+F + E+ L +  VATDGH+L  ++   +    K   ++  +
Sbjct: 117 RSLFATGQDELRPIMNGIYFDLKEDGLAI--VATDGHKLVKSKNTAIRSDVKRSFVLAKK 174

Query: 203 KAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261
            A   +LR + +KDS+ V+V   +    ++  +  +S RLI+G +PNY++VIP  N  ++
Sbjct: 175 PA--SLLRNILTKDSTMVEVKFDDRNAEVHFPNGMLSCRLIEGNYPNYESVIPQDNPNQI 232

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPM 320
            ++   L   + RV   +S   Q ++L +    + ++ ++ D    A ESM   Y   PM
Sbjct: 233 TLDRKGLVSVLRRVLPFASESSQLIRLHVEQGLVELSSEDIDFATSAKESMVCDYVGIPM 292

Query: 321 DICFNYKYLLEIIDNISSDEVV 342
           +I F    L E+++N+ SD+V+
Sbjct: 293 NIGFKGGALGEVLNNLDSDDVM 314


>gi|288554607|ref|YP_003426542.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
 gi|288545767|gb|ADC49650.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
          Length = 380

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 93/378 (24%), Positives = 184/378 (48%), Gaps = 23/378 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  + +  + +  + TIP+   + + A+   + +  S  ++ I   IP  
Sbjct: 1   MQFTIQRDRFVHDVQNVAKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDVSIETFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL  G  I    +++  T   I  G S F L  
Sbjct: 61  DAENEIVTIEQEGSIVLQARFFAEIVKKL-PGETIELIVQDQFAT--TIRSGSSVFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F L   +LKN++ +T FA++T+E R  L G+  ++  E+ +L 
Sbjct: 118 LDPEEYPRLPQLEEDLLFRLPQDMLKNMIRQTVFAVSTQETRPVLTGV--NLETEEGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+ +  I     ++   ++++P K++ E+ +I+   +  + V ++E++I  
Sbjct: 176 CTATDSHRLAMRKATIERNDEELTFSNVVIPGKSLNELSKIIDDSNELIDVVVTENQILF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL- 288
             ++L    RL++G++P  +N+IP  +     +      Q ++R  ++S   +   + L 
Sbjct: 236 KFKNLLFFSRLLEGKYPVTKNMIPAQSKTSFTLKTKPFLQTLERALLLSREGKNNVINLK 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +L    + +T   P++GK  E++     +   M I FN K +++ +  I S+E+    +V
Sbjct: 296 TLDEGLIEITSIQPEVGKVTENIQSEQMQGEDMRISFNGKNIIDALKVIDSEEI---NIV 352

Query: 348 FRLDSSNSSVFIRGKDKD 365
           F    + S   IR  D D
Sbjct: 353 F--TGAMSPFVIRPTDHD 368


>gi|217077436|ref|YP_002335154.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B]
 gi|217037291|gb|ACJ75813.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B]
          Length = 367

 Score =  116 bits (290), Expect = 6e-24,   Method: Compositional matrix adjust.
 Identities = 87/345 (25%), Positives = 176/345 (51%), Gaps = 11/345 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           +K+ ++RS++ + +  A + +  K   P+   +L +  D  L I ++  +  +   +   
Sbjct: 2   LKLAIQRSELEKKISVAAQAVGSKTVDPILQCLLFKVEDNSLNIYSTDMQTFVVSKLNVP 61

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-F 118
            V+  G   V A LL +IV+ + D  QI    +N    ++NI  G S+F + ++ E E F
Sbjct: 62  EVEGSGQFAVDAKLLEEIVKNV-DNDQIILNYDN---GKLNIKSGKSSFNIATYSEPEKF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS + E     FE+ +S+L+ +++R  F  +TE     LNG+++ + +  L+L  VA+DG
Sbjct: 118 PSIELENTGIKFEIETSILQEMIDRVIFCASTESAMRALNGVYWELKDNYLRL--VASDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237
           +RLA+ E  I   +      I+  K++ E+  ++   D  V  ++    ++ +N   +++
Sbjct: 176 YRLALVEQKIT--VNSDIDFILSLKSMKELENLIKETDEPVLTINFDHKKLAVNAGDVTV 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
            +R+++  FP+Y+ V+P +    +  N     +++ R  I++      V+L    D L +
Sbjct: 234 IMRVVEEVFPDYKRVLPKAFKSRIVFNKDQFLESLKRTMIIAKRGTDKVQLKALDDTLEL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +  +P+ G+ IE + +      + I FN ++L E +  I  +EVV
Sbjct: 294 SSQSPEYGEVIEEIPIEKEGEDITINFNPRFLNEAVKKIEEEEVV 338


>gi|298491074|ref|YP_003721251.1| DNA polymerase IF1 subunit beta ['Nostoc azollae' 0708]
 gi|298232992|gb|ADI64128.1| DNA polymerase III, beta subunit ['Nostoc azollae' 0708]
          Length = 382

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 179/357 (50%), Gaps = 23/357 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I     
Sbjct: 1   MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRSTFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE----LGTEVNISHGDSNFYLQSFP 114
           A V   G+I + A LL DI  +L +G +I+   E+      G  V +      + +++  
Sbjct: 61  AEVIEGGAIALPAKLLVDITSRLPEG-EITLDDESGDNTGEGILVTLKPKSGKYQVRAMG 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP     E   + +L ++ +   ++ + FA + +E +  L G+   + ++ L+  A 
Sbjct: 120 AEEFPELPVIESSEAIQLTTAAVIEGLKGSLFATSADETKQVLTGVHLTVKQDTLEFAA- 178

Query: 175 ATDGHRLAVAE------VDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSES 226
            TDGHRLAV E      +D   Q+     + VP +A+ E+ R+L  SS + +V + L   
Sbjct: 179 -TDGHRLAVLETTNERPIDSNEQL----EVTVPARALRELQRMLAHSSLEETVALYLDPG 233

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           ++  + ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   V
Sbjct: 234 QVVFSWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTLERRQFISTLERIAVLADQKNNIV 293

Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           K+S+  ++ ++ ++ +  D+G   ESM    +   +DI FN KYL+E +  + S E+
Sbjct: 294 KVSIDNANQEITLSCEAQDVGSGTESMPAKISGEDIDIAFNVKYLMEGVKELPSSEI 350


>gi|315644301|ref|ZP_07897471.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453]
 gi|315280676|gb|EFU43965.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453]
          Length = 380

 Score =  116 bits (290), Expect = 7e-24,   Method: Compositional matrix adjust.
 Identities = 82/354 (23%), Positives = 179/354 (50%), Gaps = 17/354 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI++ ++ + E + H  + I  + TIP+   + L      + + AS  +I I   IP+ 
Sbjct: 1   MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPSE 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL         K+N    +  IS G +   +  
Sbjct: 61  DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKDN---FQTFISSGATEIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  +   +LKN++++T F+++T E    L G+ +++N+ +LK  
Sbjct: 118 LDPEEFPVLPNIEDSQTVSIPGDLLKNMIKQTVFSISTHETTPILTGVLWNLNDNELKFT 177

Query: 173 AVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A  TD HRLA     +   Q     ++++  K + E+ +I+  +++ V + ++++++   
Sbjct: 178 A--TDRHRLATRSAQLEGTQDISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289
           I+ +    R++DG +P+   +IP S+  EL ++   L +++DR  ++S      + L  +
Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           +    + ++  + ++GK  E +++  +   P+ I FN KY+L+++  + S++++
Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVESEQLM 349


>gi|172036779|ref|YP_001803280.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142]
 gi|171698233|gb|ACB51214.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142]
          Length = 393

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/408 (24%), Positives = 191/408 (46%), Gaps = 40/408 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK    +SD+   L    R +  + T P+  +VL+ A+     + + A    + I  +  
Sbjct: 1   MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLVIADSQKNRVSLTAFDLSLGIETSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L +G +I+   E     +   V +      F +++   
Sbjct: 61  ADVSEDGKITLPAKLLNDIVSRLPEG-EITLMAEEAEDNDSQIVALKCASGQFQVRAMDA 119

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     E   S +L   +L   ++   FA +++E +  L G+      + L+  A  
Sbjct: 120 EEFPPLPTVEEGESIQLPIIMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEFAA-- 177

Query: 176 TDGHRLAVAEVDIVAQI---------AKMP-----SIIVPRKAVGEILRILSSKDSSVKV 221
           TDGHRL+V E  +  Q          ++MP     ++ +P +A+ E+ R++ ++  S  +
Sbjct: 178 TDGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRSESDAI 237

Query: 222 SLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +L   E+++   +    ++VR +DG +PNYQ +IP    + + +    L  +++RV++++
Sbjct: 238 ALQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVAVLA 297

Query: 280 SVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
             +   VK + + +  ++ ++V+  D+G A ESM         +I FN KYL++ +  + 
Sbjct: 298 DQKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLKALP 357

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +      E+  +L+  N  V           N    +   Y++MP++I
Sbjct: 358 T-----KEIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391


>gi|218961814|ref|YP_001741589.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730471|emb|CAO81383.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 389

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 99/407 (24%), Positives = 199/407 (48%), Gaps = 42/407 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--P 58
           M++ +E+ D+L  + H   I+  KNT P+  + L++ ++   +++ S  ++E+   +  P
Sbjct: 1   MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G++ VSAH   +I+  + DG  I+ ++ ++L   + I  G  +F L     + F
Sbjct: 61  AAVSEGGTVAVSAHHFNEIINYMPDGV-INLWRNDDL---LMIQCGKVDFNLLIADHTLF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +      + + +   ++ +T+FA++T+  R  LNG+ + I   D  + A ATDG
Sbjct: 117 PVIPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKI-YPDHHIMA-ATDG 174

Query: 179 HRLAVAEVDIVAQIAKM-------PSI-------------IVPRKAVGEILRILSSKDSS 218
            +  VAE+ I+             P +             ++P K +  + +I + +   
Sbjct: 175 RK--VAEIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKE 232

Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           +KV L  +RI        +S ++++ +FP+YQ   P     +  ++   L  A+ RV+++
Sbjct: 233 LKVGLEHNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALV 292

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNIS 337
           +      +   L SD+  +   N D G+A E+M+ + +      I FNYKY+L I++ I 
Sbjct: 293 APDDNLRIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAID 352

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     ++VV +L +S  ++ I  +        D ++   ++LMP+R
Sbjct: 353 T-----EKVVIKLGTSKDAMMIYNETPLP----DQEIT--FLLMPLR 388


>gi|149194733|ref|ZP_01871828.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2]
 gi|149135156|gb|EDM23637.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2]
          Length = 350

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 93/343 (27%), Positives = 167/343 (48%), Gaps = 24/343 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +++  I  L+  A    E+K+   ++ H+L+ AN+ L  IKA+  EI I     A 
Sbjct: 1   MYIKIQKPVIESLINQAMPFTEKKDNTQITSHILIDANENLT-IKATDKEIGIKLTTDAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           +   G IT++   L+DI++ L++       KE E+ +E   + I    S + L SF  +E
Sbjct: 60  IINPGKITINGKKLFDIIKTLKN-------KEIEIKSENDKITIKQDTSIYNLTSFNANE 112

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP       +   E+ ++   + +++   ++     +Y LNG  F I E   K   V+TD
Sbjct: 113 FPEFPNPNDLEKLEVDNNEFFDAIKKIFPSIDNNNPKYELNGALFDIKE---KTNFVSTD 169

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             RLAV   +      +   IIVP++++ EI RI       +K+   +  + L  E+   
Sbjct: 170 TRRLAVYYSNAKGNAKQ---IIVPKRSISEIKRIFKD---DMKIFYDDIYLILKDENTLF 223

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LI+G+FP Y+ +IP S    L++        + +VSI+S+     V++ +++DK+  
Sbjct: 224 FTKLINGKFPTYEKIIPNSFKYTLKIPKDEFTSYLKQVSIISN----EVRIKITNDKIEF 279

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              + +  KA  S N   N    +   N +YL + ++ I+S+E
Sbjct: 280 ESISDETTKAKTSFNFNSNIEEFEFAVNSRYLFDFLNIINSNE 322


>gi|220927461|ref|YP_002504370.1| DNA polymerase III subunit beta [Clostridium cellulolyticum H10]
 gi|219997789|gb|ACL74390.1| DNA polymerase III, beta subunit [Clostridium cellulolyticum H10]
          Length = 366

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 91/340 (26%), Positives = 173/340 (50%), Gaps = 9/340 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + ++L  +    + +  K T+P+   +LL A+D   ++  +  EI I   + A 
Sbjct: 1   MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNADDKF-KLTGNDLEIGIECYVEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I +++ +  DIVR+L D   +     N L   V +   +S+F ++    S +PS
Sbjct: 60  IRSTGCIVINSKIFGDIVRRLPDSEVLIEVTGNNL---VIVECENSHFEIKGINPSGYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     EL  S LK+++ +T FA+ ++E R  L G    +  +D +L  V+ DG R
Sbjct: 117 LPVVEKENILELTQSDLKDMIRQTVFAVGSDENRPVLTGSLIEV--KDKELVIVSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   ++   I    S+IVP K + EI +IL   D  V V  S +++  + +S  +  R
Sbjct: 175 LALRRKNLENDINDF-SVIVPGKTLNEISKILQPTDEEVSVYSSNNQVVFDAKSWRIVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LI+G+F NY +++    + ++ +N    + +++R S++S + +   VKL + +DK+ +T 
Sbjct: 234 LIEGKFLNYNSLLNKDFETKVIINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIIIT- 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
            N D+G   E +        ++I +N  +L++ +  I  +
Sbjct: 293 SNADLGNVREEVKAEIEGNALEIGYNPAFLIDALKAIDEE 332


>gi|294496877|ref|YP_003560577.1| DNA polymerase III subunit beta [Bacillus megaterium QM B1551]
 gi|295702244|ref|YP_003595319.1| DNA polymerase III subunit beta [Bacillus megaterium DSM 319]
 gi|294346814|gb|ADE67143.1| DNA polymerase III, beta subunit [Bacillus megaterium QM B1551]
 gi|294799903|gb|ADF36969.1| DNA polymerase III, beta subunit [Bacillus megaterium DSM 319]
          Length = 378

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 174/359 (48%), Gaps = 30/359 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +++  +++ +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MKFIIQKDYLVQSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPNE 60

Query: 61  ------VDV--CGSITVSAHLLYDIVRKLQDG-----AQISFFKENELGTEVNISHGDSN 107
                 VD+   GS+ + A    +IV+KL         Q  F           I  G + 
Sbjct: 61  EEGKEIVDIQKPGSVVLPARFFSEIVKKLPKDIVELDVQSHFL--------TIIRSGKAE 112

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
           F L      E+P   + E    F L + +LKN++ +T FA++T E R  L G+ + ++ +
Sbjct: 113 FNLNGLDAEEYPHLPQIEENNMFRLPTDLLKNMIRQTVFAVSTSETRPILTGVNWKVDGK 172

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           +L    +ATD HRLA+ +  I        ++++P K++ E  +IL      V + ++E++
Sbjct: 173 EL--TCIATDSHRLALRKATIETGNEATYNVVIPGKSLSEFSKILDDSHELVDIVITENQ 230

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
           +    + L    RL+DG +P+   +IP  +  ++ +N     Q++DR S+++   R   V
Sbjct: 231 VLFKTKHLLFFSRLLDGNYPDTSRLIPADSKTDVILNVKEFLQSIDRASLLAREGRNNVV 290

Query: 287 KLSLSSDKLC-MTVDNPDMGKAIE---SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           KLS   + +  ++ ++P++GK IE   S ++   E  + I F+ KY+L+ +  +   ++
Sbjct: 291 KLSTLDEGIVEISSNSPEIGKVIEEVQSQSISGEE--LKISFSAKYMLDALKALEGTDI 347


>gi|160914814|ref|ZP_02077028.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991]
 gi|158433354|gb|EDP11643.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991]
          Length = 372

 Score =  115 bits (289), Expect = 8e-24,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 165/340 (48%), Gaps = 15/340 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + + +    L  A R I   + +P    + + A +  + +  S  ++ I   +   
Sbjct: 1   MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60

Query: 61  VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            D        GSI + A  + +IVRK  D   I F  E   G+   IS   + F +    
Sbjct: 61  EDCVLEIKEMGSIVIEAKYILEIVRK-TDADIIEF--EMIDGSLTKISGNSAEFRINGMK 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             E+P+    +   SF+LA  VLK ++ +T FA + +E R  L G+ FH   E  +L  V
Sbjct: 118 AIEYPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHC--EGNELHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   V++  ++    ++ +P K++ E+L+ L  ++  V++++++ +    I  
Sbjct: 176 ATDSYRLARKTVELEEELNF--NVTIPSKSLQEVLKTLEGENE-VEIAVNDKKAQFIIGD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K SLS  +
Sbjct: 233 TIVQTRLIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEII 333
             ++  + ++G + E + +  +   P++I  N +Y+ E I
Sbjct: 293 CVLSSKSIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAI 332


>gi|293374956|ref|ZP_06621252.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909]
 gi|325844316|ref|ZP_08168092.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1]
 gi|292646433|gb|EFF64447.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909]
 gi|325489183|gb|EGC91565.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1]
          Length = 378

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 163/325 (50%), Gaps = 19/325 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V+R  +L  L +  + I  K  +PV   +    +D  L +  S  +I I   +P  
Sbjct: 1   MKIKVDRQLLLTQLSYISKAIPTKTPLPVLTGIKFVVSDEGLYLTTSDSDITINTFLPLE 60

Query: 61  V--------DVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQ 111
           V        D  GSI +      +I++KL  D  +IS F+    G  V I  G S + L 
Sbjct: 61  VNDTQVIQIDAVGSIIIPGKYFIEIIKKLNGDTIEISTFE----GNYVTIKCGRSEYTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            F  +++P+ +  +      +   +LK ++ +T F+ A  E R  L G+ F  + ++L +
Sbjct: 117 GFDVTQYPNIELIKNDDPIHMEKQLLKTIIRQTVFSTANSENRPVLTGVNFRYDADEL-M 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           C VATD  RL+   V +  ++    +I++P +++ E+ +IL    +SV + L+ ++I   
Sbjct: 176 C-VATDSFRLSKKTVPL-NKLHDSFNIVIPGRSLIELSKILDDSHNSVDIYLANNQILFQ 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSL 290
           I ++S   RL+DG +P  +  +P +   E++ N   L  A DR ++++  ++   VKL++
Sbjct: 234 IGNISFQSRLLDGIYPETKEFVPTTFGIEIKANYHELLNAFDRAALIARDQVSNVVKLNI 293

Query: 291 --SSDKLCMTVDNPDMGKAIESMNV 313
                KL +T  +P++GK  E + V
Sbjct: 294 LPEESKLLITAQSPEVGKVEEEVQV 318


>gi|186680583|ref|YP_001863779.1| DNA polymerase III subunit beta [Nostoc punctiforme PCC 73102]
 gi|186463035|gb|ACC78836.1| DNA polymerase III, beta subunit [Nostoc punctiforme PCC 73102]
          Length = 387

 Score =  115 bits (289), Expect = 9e-24,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 174/358 (48%), Gaps = 20/358 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--------GTEVNISHGDSNFYL 110
           A V   G+I + A LL DI  +L +G +I+   E+ L        G  V ++    ++ +
Sbjct: 61  AEVWQGGAIALPAKLLVDITSRLPEG-EITLDDESALTGATSSGEGLIVTLTPKSGHYQV 119

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           ++    EFP     E      L ++ L   +  + FA + +E +  L G+   + ++ L+
Sbjct: 120 RAMGPEEFPELPVIENTEVIYLTTAALVEGLRGSLFATSGDETKQVLTGVHLTVKQDTLE 179

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILS---SKDSSVKVSLSE 225
             A  TDGHRLAV E      +       + VP +A+ E+ R+L+   S D  V +   +
Sbjct: 180 FAA--TDGHRLAVVETSNERPLGGTSQLEVTVPARALRELQRMLAHSASSDEPVALYFDQ 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++    ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   
Sbjct: 238 GQVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFVSTLERIAVLADQKNNI 297

Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           VKLS+ S   ++ ++ +  D+G   ESM    +   ++I FN KYL+E +  + S E+
Sbjct: 298 VKLSIDSKAQEITLSCEAQDVGSGRESMPAQISGENIEIAFNIKYLMEGLKELPSSEI 355


>gi|229551103|ref|ZP_04439828.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|258538193|ref|YP_003172692.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus Lc 705]
 gi|229315564|gb|EEN81537.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|257149869|emb|CAR88841.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus Lc 705]
          Length = 379

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 166/342 (48%), Gaps = 20/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A+
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F ++  
Sbjct: 61  DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  + + VL+ L+ +T  A++T+E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + A       II+P K++ E+ R+L    + +++ ++E+++     
Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP---MDICFNYKYL 329
              K  +  ++PD+G   E ++  +N+     ++I FN  Y+
Sbjct: 296 GEQKATIYGNSPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 335


>gi|309774991|ref|ZP_07670007.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917245|gb|EFP62969.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 372

 Score =  115 bits (289), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 179/391 (45%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V + +    L  A R I   + +P    + + A +  L +  S  ++ I   +  S
Sbjct: 1   MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60

Query: 61  VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +        GSI + A  + +IVRK+ D  +I F  E   G+   IS   + F +    
Sbjct: 61  EECVLEIRDMGSIVIEAKYILEIVRKI-DAEEIEF--EMIDGSLTKISGNTAEFRINGMR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P+    +    F L    LK ++ +T FA + +E R  L G+ FH   E   L  V
Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHC--EGNTLHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   +DI    A   +I +P K++ E+++ L   +  V++++++ +    I  
Sbjct: 176 ATDSYRLAKKTIDIAE--ALNFNITIPAKSLSEVVKTLEG-EGEVEIAVNDKKAQFIIHD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K SLS  +
Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             ++  + ++G + E + +  ++   ++I  N +Y+ + I  +S        V FRL   
Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFHGNSLEISCNGRYVFDAIKALSG-----SLVTFRLCGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                I+  D D         N   +++P+R
Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369


>gi|257783817|ref|YP_003179034.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469]
 gi|257472324|gb|ACV50443.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469]
          Length = 366

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 190/389 (48%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S +   L    + I    T+P+   + L+A +G+LE+++S   I I   I A+
Sbjct: 1   MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIAAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQSFPESEF 118
           V+  G   VS  ++ +IV+ L D A I+F      G E  +S     S+F L +    ++
Sbjct: 61  VEEEGETVVSGKVIQNIVKNLPDAA-ITF-----EGGERTLSVICQRSSFRLNTLSAHDW 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               E     + EL S +L  +V++ +   + E  R  L GI   + +  ++L  VATD 
Sbjct: 115 AQFPEFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRL--VATDS 172

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLAV + +      +  SII+  +   ++L + S  +  V +  +++++     + +  
Sbjct: 173 FRLAVCDSNTDTPAGESFSIIISGEVFHDVLSMRSMTE-KVLIGTTDNQVIFQFGNTTHI 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLC 296
            R I+G FP+Y+ ++P S    + +N  +   A+ RVS+++     +V+  + +D  ++ 
Sbjct: 232 SRKIEGHFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIALAN-PSVRFDVDADGKEVK 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  +PD G++ E +        + I  NY Y+ + ++   S +++      RL+     
Sbjct: 291 LSASSPDQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSKDLL------RLE----- 339

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++G  + +    + KVN  Y+LMP+R+
Sbjct: 340 --LQGPSQPAIFKSNGKVNYLYLLMPVRL 366


>gi|289807836|ref|ZP_06538465.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 147

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 55/142 (38%), Positives = 88/142 (61%), Gaps = 3/142 (2%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV  + + 
Sbjct: 7   FTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVCSMPLE 64

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
           A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + +L+DG FP+Y
Sbjct: 65  ASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDY 123

Query: 250 QNVIPCSNDKELRVNCTNLRQA 271
           + V+P + DK L   C  L+QA
Sbjct: 124 RRVLPKNPDKHLEAGCDILKQA 145


>gi|159898038|ref|YP_001544285.1| DNA polymerase III subunit beta [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891077|gb|ABX04157.1| DNA polymerase III, beta subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 381

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 94/394 (23%), Positives = 183/394 (46%), Gaps = 46/394 (11%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L L GHA   +  ++++PV  ++LL    G L++  +  EI IT  + A VD  G+IT+ 
Sbjct: 14  LALAGHA---VAGRSSLPVLANILLATESGRLKLAGNNLEIGITALVGAKVDEDGAITIP 70

Query: 71  AHLLYDIVRKL-QDGAQISFFKENEL------GTEVNISHGDSNFYLQSFPESEFPSTKE 123
           A LL D+V  L  D  ++      +       GT+ NI   D++     FP    P    
Sbjct: 71  AKLLSDLVGNLPNDTVELEVDPRTQTLTVTCRGTKANIKGIDAD----EFPAMAVPG--- 123

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E V ++ L   +L+ +V +   A A E       L G+   ++       A+  DG+RL
Sbjct: 124 NEPVLAY-LPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATFAAI--DGYRL 180

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSV 239
           AV  +++    A    +++P +A+ E+ R L   ++ + +S++    ++  + +++    
Sbjct: 181 AVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTVDFVS 240

Query: 240 RLIDGEFPNYQNVIPCSNDKELR--VNCTNLRQAVDRVSIMSSVRIQAVKLSL------S 291
           R+IDG+FP+Y+  +P +++   R  ++     +AV R+++ S      V L++       
Sbjct: 241 RVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERGDGSE 300

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L +  +  ++G+++E+++   +     +  N +YL E +  I +     D+V     
Sbjct: 301 PGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDT-----DQVALETQ 355

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + NS    R    D            +++MPMRI
Sbjct: 356 TPNSPGVFRPIGGDEY---------LHLVMPMRI 380


>gi|328954616|ref|YP_004371949.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2]
 gi|328454940|gb|AEB06134.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2]
          Length = 367

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/388 (25%), Positives = 185/388 (47%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV ++ + E L    + +   +T+P+   VL+ A DG+LE + S   I I   I A 
Sbjct: 1   MEFTVSQNALSEALAIVSKGVASASTLPILSGVLITAGDGVLEFQTSNYTISIRHRIAAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ V    L +I + L D A + F     +  +VNI+   S F L +   ++FP 
Sbjct: 61  VEKDGSLVVPCKTLSNITKTLPD-APVRF---QLVERQVNITCEKSTFRLNTLDAADFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   + EL S  L ++V R     +T++ R  L G+   +    ++L  VATD  R
Sbjct: 117 FPTYALESAVELPSRTLTDMVARVWRVTSTDKARPILGGVHMTVENNTIRL--VATDSFR 174

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV +  +  + +     + VP  A  + L I+S +  ++ V  +++++       +   
Sbjct: 175 LAVCDTQVETSSLEGSFELNVPADAFNDALTIMSEQQ-TILVGATDTQVVFEAGDTTYVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LCM 297
           R I+G +PNY  +IP S    ++++   +  A+ RVS ++S    AVK ++  ++  L +
Sbjct: 234 RRIEGVYPNYNQLIPDSCTTSVKIDVEAITAALKRVSAIASTN-PAVKFAIDVERGSLAL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D   A E ++V        I FNY Y+   ++ ++ ++ +  E+    + + + V
Sbjct: 293 SAISSDQDLAQEIIDVEAEGESGVIAFNYHYIFGCLNVLAKEQEISLEL---KNYTQAGV 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F              K+N  Y++MP+RI
Sbjct: 350 F----------KSYGKINYLYLVMPVRI 367


>gi|199598233|ref|ZP_03211654.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus
           HN001]
 gi|199590836|gb|EDY98921.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus
           HN001]
          Length = 379

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 166/342 (48%), Gaps = 20/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A+
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F ++  
Sbjct: 61  DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  + + VL+ L+ +T  A++T+E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADEALTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + A       II+P K++ E+ R+L    + +++ ++E+++     
Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP---MDICFNYKYL 329
              K  +  ++PD+G   E ++  +N+     ++I FN  Y+
Sbjct: 296 GEQKATIYGNSPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 335


>gi|284051274|ref|ZP_06381484.1| DNA polymerase III subunit beta [Arthrospira platensis str. Paraca]
 gi|291566285|dbj|BAI88557.1| DNA polymerase III beta subunit [Arthrospira platensis NIES-39]
          Length = 393

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 97/411 (23%), Positives = 202/411 (49%), Gaps = 46/411 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           M++ VE+  +   L    R I  + + P+  ++L++A+     L + A    + I  + P
Sbjct: 1   MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINASFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPES 116
           A V   G +T+ A LL DIV +L  G      + N+  TE  V ++     + ++     
Sbjct: 61  AQVQQGGVLTLPAKLLNDIVSRLPGGD----IEVNDEDTEAVVTLTSSSGRYQVRGMVAE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P     +  +S +LA+  L   ++ T FA + +E +  L G+   + ++   LC  +T
Sbjct: 117 EYPELPSVQGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFAST 174

Query: 177 DGHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSS-------------- 218
           DGHRLAV +V+ V    ++  +   I +P +A+ E+ R++ S +S               
Sbjct: 175 DGHRLAVVKVENVRDPNSEEQEDLEITIPARALREVERMIVSANSGRHSTATEEEATTPL 234

Query: 219 -VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
            V +   ++++  ++ +  ++ R ++G +P Y+ +IP     ++ V    L  A++R+ +
Sbjct: 235 MVTLGFDDTQVVFDVGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLGALERIGV 294

Query: 278 MSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIID 334
           ++S +   VK  +   + ++ ++V+  D+G A+ESM      E P ++ FN KYL++ + 
Sbjct: 295 LASQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLK 354

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++S      E+  +L+++++ V I         N    +   Y++MP+++
Sbjct: 355 VLNS-----SEIQIQLNAASTPVII---------NPLGGLKMTYLVMPIQL 391


>gi|294786218|ref|ZP_06751472.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305]
 gi|315225748|ref|ZP_07867536.1| DNA-directed DNA polymerase III beta subunit [Parascardovia
           denticolens DSM 10105]
 gi|294485051|gb|EFG32685.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305]
 gi|315119880|gb|EFT83012.1| DNA-directed DNA polymerase III beta subunit [Parascardovia
           denticolens DSM 10105]
          Length = 374

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 180/391 (46%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+ +   E +    RII  +   P+   V L+A DG L++ A   E+     I A 
Sbjct: 1   MKVEVDSAAFSEAVSWTTRIIPTRPATPILAGVKLEAADGTLQLSAFNYEVSARNHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L  G        +  G +V I+ G S F LQ  PES++P 
Sbjct: 61  VDESGTVVVQGKLLADIAKSLPAGK----IYLSTSGAKVTIAAGKSTFSLQLMPESDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +    +      + + +   A++ EE R  L G+    + + +++   ATD  R
Sbjct: 117 LPSVPAILG-SIDGDTFSHAISQATVAISREETRPVLTGVKMVFSGDKVQMT--ATDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL-----SESRIHLNIES 234
           L+ +        A + + ++ R   G ++R +  S D+S  V +     S + +  +   
Sbjct: 174 LSRSTFTWSPSAADLETELLVR---GSLMRDVARSLDASQNVVIGFDPESPTLVSFDNAG 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP+   +        + VN T+L  A+ RVS+++  R   +++S    +
Sbjct: 231 KVSTAQLIDGEFPSVDRLFASDYPIHVVVNKTDLIDAIRRVSLVAE-RNAPIRMSFEGKE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  + D  +A E++ +  +  P+ I FN  YLLE +  I      +  V  ++ +  
Sbjct: 290 LTLSAGSSDESQAQETLPIDMDGEPITIAFNPSYLLEGLGAI-----YEPYVRMKMVAPT 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +V   G+    + + D  ++  Y+L+P+R 
Sbjct: 345 KAVEFNGQQ---EQDGDESLDYRYLLVPVRF 372


>gi|313900815|ref|ZP_07834305.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2]
 gi|312954235|gb|EFR35913.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2]
          Length = 372

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V + +    L  A R I   + +P    + + A +  L +  S  ++ I   +  S
Sbjct: 1   MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60

Query: 61  VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +        GSI + A  + +IVRK+ D  +I F  E   G+   IS   + F +    
Sbjct: 61  EECVLEIRDMGSIVIEAKYILEIVRKI-DADEIEF--EMIDGSLTKISGNTAEFRINGMR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P+    +    F L    LK ++ +T FA + +E R  L G+ FH   E   L  V
Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHC--EGNTLHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   +DI   +    +I +P K++ E+++ L   +  V++++++ +    I  
Sbjct: 176 ATDSYRLAKKTIDISESLNF--NITIPAKSLSEVVKTLEG-EGEVEIAVNDKKAQFIIHD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K SLS  +
Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             ++  + ++G + E + +  +    ++I  N +Y+ + I  +S        V FRL   
Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFTGSSLEISCNGRYVFDAIKALSG-----SLVTFRLCGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                I+  D D         N   +++P+R
Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369


>gi|229017981|ref|ZP_04174857.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
 gi|229024202|ref|ZP_04180665.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|228737094|gb|EEL87626.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|228743250|gb|EEL93374.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
          Length = 376

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 102/396 (25%), Positives = 181/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  KN IP+   + + AN   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKNLIPILSGIKITANPSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEGVQITTIVKAGSIVVPAKYFIEIIKKMPSDILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I+   L +C
Sbjct: 117 FSANEFPNVPFIDEHAEIQVETEQLIEVFKQTVFAAAKNESRPVLTGVHFVIDHNKL-IC 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           A ATD HRLA+ E+ I +  AK+ + IVP   + E+L++++S  + V + LSES I    
Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKQILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +       N   +GK  E+  +     E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DESTIQISSNASQIGKISETQQIDTILGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPIVIEAGEQSA---------AVYLISPVR 374


>gi|164686445|ref|ZP_02210473.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM
           16795]
 gi|164604456|gb|EDQ97921.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  115 bits (288), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 99/347 (28%), Positives = 178/347 (51%), Gaps = 16/347 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  +   +G   + I  K T+ +   VL+      + +K    EI I   +PA 
Sbjct: 1   MKIICNQKLLANKIGIVQKAINSKTTLDLLKGVLIVTKQDEIILKGYDLEIGIESHVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   GSI +++ L  DI+RKL D    SF + E +    V I+  +S F ++     E+P
Sbjct: 61  VIQEGSIVINSKLFGDIIRKLPD----SFVEIETDEDNNVYINCLNSKFKIKGDSAKEYP 116

Query: 120 STKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
              +  E+ +YS  +   VLK+++++T FA + ++ +  L G    I   ++ L  VA D
Sbjct: 117 QIPDVNEDKLYS--IPQDVLKSMIKQTVFATSQDQTKPILMGELLEIENGNINL--VAID 172

Query: 178 GHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           G+R AV   +VD +        II+P K + ++  +LSS++  VKV  +E      I   
Sbjct: 173 GYRFAVRSCQVDNLIHEDLKAKIIIPGKTLIDVNSLLSSEE-EVKVGFNEKNAIFIINDT 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK 294
            +  RL++GEF +Y+ + P   + ++++   +L  +++R S++S S +   +KLS+    
Sbjct: 232 KIVTRLLEGEFIDYKKLCPREYNSKIKLKTKDLLNSIERASLLSQSEQNNLIKLSIRDSM 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +T +N + G   E +++      +DI FN +YLLE + NI  +E+
Sbjct: 292 MAITSNN-EKGNVYEEVSLSLEGDYLDIAFNSRYLLEGLKNIDCEEI 337


>gi|256848505|ref|ZP_05553947.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714772|gb|EEU29751.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis
           101-4-CHN]
          Length = 378

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/340 (25%), Positives = 161/340 (47%), Gaps = 17/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS     L +  R I  K TIP+   V +   D  + +  S  +I I   + A 
Sbjct: 1   MKFTINRSVFANQLNNVLRAISSKTTIPILTGVKIVVEDQQVILTGSNADITIQTTLSAE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  G+I + A    +I++KL D        E   G +  IS G + F +   
Sbjct: 61  NGKTALTIEEPGAIVLPARFFSEIIKKLPDQ---DVTIEVHDGFQAKISSGTAEFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   +    + +L+++VE+T  A++ +E R  L GI  H+   D +L A
Sbjct: 118 DANNYPHLPEIQSASTITAVADLLRDVVEQTRIAVSKQESRPILTGI--HMRLADDQLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA  +V +     +   +++P  ++ E+ R+++     +++ ++E+++    +
Sbjct: 176 VATDSHRLAQRKVTVPTN-GQSYDVVIPGNSMTELARMIADVKGDIQIQIAENQVLFQFD 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           +     RL++G +P    +IP + D  + +   N   A+DR S++S       VKLSL  
Sbjct: 235 NALFYSRLLEGMYPETSRLIPDTADTTIELEAGNFLAAIDRASLLSHQGHNNVVKLSLDP 294

Query: 293 DKLCMTV--DNPDMGKAIESMNV-YYNECPMDICFNYKYL 329
           D     +  D+ D+G   E ++        ++I FN  Y+
Sbjct: 295 DTNTAKISGDSADVGNVEEDVSFEKLTGNKLEISFNPDYM 334


>gi|289642467|ref|ZP_06474612.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289507726|gb|EFD28680.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 385

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 175/399 (43%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER D  + +    R +  + T  + V   ++L A    L + A   E+     + 
Sbjct: 1   MKFRVERDDFTDAVAWTARTLPTRATSQLQVLAGLMLDATGPSLSVAAFDYEVAAQSGVD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+++  G   VS  LL +I R L   A +  + +   G  V ++ G++ F L +    ++
Sbjct: 61  ATIEQEGRALVSGKLLAEITRALPS-APVDLYTD---GARVVLTCGNARFTLPTMSVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      V +  +  +     V +   A   ++    L G+   I+ + L L A  TD 
Sbjct: 117 PALPPMPAV-TGHIEGAAFAGAVSQVAVAAGKDDTLPVLTGVRVEIDGDVLTLAA--TDR 173

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV ++           + +VP + + E  + LS     V +SL      E+      
Sbjct: 174 YRLAVRKLRWRPASETADGVAMVPARTLSETAKSLSGSGVEVAISLGSGPSGEALAGFAG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+DG FP YQ ++P S+    +V      +AV RV+++++ R   V+LS S 
Sbjct: 234 GGRQTTTRLVDGSFPPYQRLLPDSSPLTAQVEIAPFAEAVKRVALVAA-RTAPVQLSFSD 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV------VDDEV 346
           D+L +        +A E++ + Y+   + I FN  YLL+ +  + SD V       DD  
Sbjct: 293 DQLVLEAGAGGEAQAQETLTIGYDGPSLSIAFNPSYLLDGLGALESDVVHVGFASADDPD 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++S     + GK  D     D +    Y+LMP+R+
Sbjct: 353 ----EASKKPAILTGKAPDDGEVPDYR----YLLMPIRL 383


>gi|320332620|ref|YP_004169331.1| DNA polymerase III subunit beta [Deinococcus maricopensis DSM
           21211]
 gi|319753909|gb|ADV65666.1| DNA polymerase III, beta subunit [Deinococcus maricopensis DSM
           21211]
          Length = 360

 Score =  115 bits (287), Expect = 1e-23,   Method: Compositional matrix adjust.
 Identities = 87/339 (25%), Positives = 172/339 (50%), Gaps = 16/339 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V +  + E +G   RII  +N+ P+   + + A +  L +  +  EI+++  + A 
Sbjct: 1   MRAQVSKKALNEGVGMLERIIPARNSNPLLTALKVDATERGLTLSGTNLEIDLSCFVAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+   +  V AHL   IVR L  G ++   + +  G E+ +  G S F LQ+   S +P 
Sbjct: 61  VNEQAAFVVPAHLFAQIVRNL--GGELVELEHS--GNELAVRAGGSEFKLQTGDLSAYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               ++V +  L ++ L   +    +A + E  +    GI         ++  +A+DG R
Sbjct: 117 LSFPDHVDT-TLDAAELAKALSSVRYAASNEAFQAVFRGIKLEYRGGQARV--IASDGFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ +    A      ++I+P ++  E++R+L  +D  V+++  E  + +  + + M+V+
Sbjct: 174 LALRDF---AAHGDGQNLILPARSADELVRVL--RDGEVRLAYGEGALGVTTDRVRMNVK 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299
           L+DG+FP+Y+ VIP     ++R+    L++AV RV++++       V+  +S   L +  
Sbjct: 229 LMDGDFPDYERVIPRDIKLQVRLQAAALKEAVSRVAVLADKNANNRVEFLVSEGTLRLAT 288

Query: 300 DNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNI 336
           +  D G+A +++ V    +E  M + FN KY+L+ +  I
Sbjct: 289 EG-DYGRAQDTLTVEQAGDEPAMSLGFNAKYVLDALGPI 326


>gi|17229502|ref|NP_486050.1| DNA polymerase III subunit beta [Nostoc sp. PCC 7120]
 gi|17131100|dbj|BAB73709.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120]
          Length = 387

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 176/358 (49%), Gaps = 20/358 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQ 111
           A V   G+I + A LL DI  +L +G +I+   E+         G  V+++     + L+
Sbjct: 61  ADVWQSGAIALPAKLLVDITSRLPEG-EITLDDESATDGTATGEGLIVSLTPKTGKYQLR 119

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
           +    EFP     E   +  L ++ L   +  + FA + +E +  L G+   + ++ L+ 
Sbjct: 120 AMGAGEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQDTLEF 179

Query: 172 CAVATDGHRLAVAEVDIVAQIA---KMPSIIVPRKAVGEILRILSSKDSS---VKVSLSE 225
            A  TDGHRLAV E      +    +   + VP +A+ E+ R+L+   +S   + + L +
Sbjct: 180 AA--TDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQ 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++    ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   
Sbjct: 238 GQVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNI 297

Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           VKL++ S   +L ++ +  +MG   ESMN       ++I FN KYL+E +  + S E+
Sbjct: 298 VKLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPSPEI 355


>gi|123965235|ref|YP_001010316.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9515]
 gi|123199601|gb|ABM71209.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9515]
          Length = 385

 Score =  115 bits (287), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 96/383 (25%), Positives = 193/383 (50%), Gaps = 32/383 (8%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIPASVDVCGSITVSAHLLY 75
            + +  + T P+  ++LL A+ G  +I  +G ++   I  +  A+V   G+IT+ + LL 
Sbjct: 18  SKAVSSRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFDATVKKSGAITIPSKLLA 77

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135
           +IV KL     +S    ++    + I     +F ++  P  ++P+    E   S  +  S
Sbjct: 78  EIVNKLPSETPVSL-DVDDSSDNILIKSDRGSFNIKGIPSDDYPNLPFVESGTSLNIDPS 136

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI---VAQI 192
                ++ T FA ++++ +  L G+ F  N + L+  + ATDGHRLAV  VD      ++
Sbjct: 137 SFLKALKLTIFASSSDDSKQLLTGVNFTFNLKFLE--SAATDGHRLAVVLVDKKENFDEV 194

Query: 193 AKMPS------IIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           A + S      + +P +++ EI +++S  + ++S+K+   + ++     +  ++ R ++G
Sbjct: 195 ADLSSNEDNLSVTIPTRSLREIEKLVSLRTSENSIKLFYDKGQVVFISSNQIITTRTLEG 254

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM-TVDNPD 303
            +PNY  +IP    K    N   L  +++R+++++  +   VK+ L    L + + D  D
Sbjct: 255 SYPNYSQLIPDDFSKLFTFNTKILIDSLERIAVLADQQSSVVKIKLEEKGLALISADAQD 314

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
           +G A E + V Y+    DI FN +YLLE +  ISS     + V+F+ + S +   +  +D
Sbjct: 315 IGNASEIVPVSYDFDQFDIAFNVRYLLEGLKVISS-----ENVLFKCNLSTTPAVLVPED 369

Query: 364 KDSKNNKDNKVNAF-YVLMPMRI 385
                     +++F Y++MP+++
Sbjct: 370 ---------NISSFTYLVMPVQV 383


>gi|330937299|gb|EGH41307.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 183

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 12/187 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAV 183
           DGHRLA+
Sbjct: 173 DGHRLAM 179


>gi|295694689|ref|YP_003587927.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912]
 gi|295410291|gb|ADG04783.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912]
          Length = 375

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 173/352 (49%), Gaps = 13/352 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+I V +  +   L    R +   +T+P+   + L A+   L + A+  EI +   + A 
Sbjct: 1   MRIHVHQQSLAAALQQVQRAVSAHSTMPILGGIKLTADTDSLRLIATNQEIAVETYLAAD 60

Query: 60  ----SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
               S+++ GSI + A    ++VRKL D   +    +      V I+   + F L  F  
Sbjct: 61  SDTLSIEMPGSIVLPARYFVELVRKLPD-PWVHLTVQQPYS--VQITSAQAAFLLHGFDP 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP   +      F + S  LK+ + +T  A+A EE R  L G+    + + +    + 
Sbjct: 118 EEFPRLPQIASDQPFLIHSDNLKDAIRQTVVAIAAEETRPVLTGLCMKFDADSITF--IG 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA  ++ +         I +VP K++ E+ R+L   D+ V ++++++ + ++ ++
Sbjct: 176 TDSHRLASRKLFLQGGPEGASEIAVVPGKSIHELARLLPEDDTPVTMTIADNTLLVSSDT 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293
                RL++G++P+   +IP +    + +       A++R  +++  ++ Q V+L L SD
Sbjct: 236 TRFFTRLLEGQYPDTSKIIPTTFKTRIHIRRDPFASALERALLIAREMQNQVVRLQLQSD 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           ++ ++  + D+G+  E + +  ++   + + FN KY+L+ + +   +++  D
Sbjct: 296 RIELSAHSHDVGRVSEQVPLDQFSGDALTLAFNGKYMLDAVRSFDGEQLTVD 347


>gi|330902070|gb|EGH33365.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 181

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 67/187 (35%), Positives = 105/187 (56%), Gaps = 12/187 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I    ++   +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DGHRLAV 183
           DGHRLA+
Sbjct: 173 DGHRLAM 179


>gi|221632726|ref|YP_002521947.1| DNA polymerase III subunit beta [Thermomicrobium roseum DSM 5159]
 gi|221156728|gb|ACM05855.1| DNA polymerase III, beta subunit [Thermomicrobium roseum DSM 5159]
          Length = 380

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 159/351 (45%), Gaps = 14/351 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++   +S++   L    R + R++T+PV  +VLL A++  L I A+  EI ++ + PA 
Sbjct: 1   MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ++V A +  + +  L    Q           ++ ++ G S   +   P  +FPS
Sbjct: 61  VTDPGQLSVRADVFTEFIGSLPK--QDVILSGTTGSNDLRVTCGTSKARIPGIPAEDFPS 118

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   +  +    L+  + +  FA AT++ R  L G+       +L L A   DG 
Sbjct: 119 LPRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTLAAA--DGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237
           RL+V  + +    A   +IIVP +A+GE+ R+L   + +V++ ++ +R  L   S  L  
Sbjct: 177 RLSVRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEF 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL-------SL 290
             RLIDG FP ++ +IP      + V+  +   A  R  I +    + VKL        L
Sbjct: 237 LSRLIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSEL 296

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
               L ++    D G   + +    +     I FN +YL +++    + E+
Sbjct: 297 DPGSLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKATEI 347


>gi|256374162|ref|YP_003097822.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827]
 gi|255918465|gb|ACU33976.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827]
          Length = 378

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 104/395 (26%), Positives = 180/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLE-IKASGPEIEITG-- 55
           MKI VER  + + +    R +  +  +PV   VLL A   DG  + +  SG + E++   
Sbjct: 1   MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGAEDGSGDALTVSGFDYEVSAQC 60

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +PA++   G   VS  LL DI + L +       + N  G  + I+ G + F L + P 
Sbjct: 61  GVPATISDGGKALVSGKLLADITKALPN----HPVEINVDGARMTITCGSAKFSLPTMPV 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P+      + + EL   V    V +   A   ++    L G+   I   D KL  VA
Sbjct: 117 EDYPALPSMPQL-AGELPGEVFGEAVAQVAVAAGKDDTLPMLTGVRLEI--ADGKLVLVA 173

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNI 232
           TD  RLA+ E +    +     +++VP K + +  + L +  + +++SL+  +  + L+ 
Sbjct: 174 TDRFRLAMREFEWTPDETLGDVAVLVPAKTLNDSAKTLGASGAKIELSLAANDGLLGLSG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+D +FP Y+ ++P  +     ++   L QA+ RVS+++    Q V+L    
Sbjct: 234 NGRRTTTRLLDADFPKYRQLLPSEHSAAAIISVDTLVQAIKRVSLVAERGTQ-VRLEFGD 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++    D G A E + V Y   P+ I FN  YLLE +  + +       + F   S
Sbjct: 293 AGLKLSAGGDDEGSAEEELPVDYQGDPVTIAFNPTYLLEGLQAVRTPRA---HLSFTTPS 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYV--LMPMRI 385
             + +           N+D +V   YV  LMP+R+
Sbjct: 350 RPALL--------KPVNEDGEVAEGYVYLLMPVRL 376


>gi|322412916|gb|EFY03823.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 378

 Score =  114 bits (286), Expect = 2e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 174/354 (49%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IPV   + +  +   + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIQALNITKRAISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A+   +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E +++       + I FN  YL+E +  I SD V
Sbjct: 293 EIAQNHISAHVNSPEVGKVNEDLDIVSQSGNDLTISFNPTYLIESLKAIKSDTV 346


>gi|75906227|ref|YP_320523.1| DNA polymerase III subunit beta [Anabaena variabilis ATCC 29413]
 gi|75699952|gb|ABA19628.1| DNA polymerase III, beta subunit [Anabaena variabilis ATCC 29413]
          Length = 387

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 89/358 (24%), Positives = 176/358 (49%), Gaps = 20/358 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQ 111
           A V   G+I + A LL DI  +L +G +I+   E+         G  V+++     + L+
Sbjct: 61  ADVWQSGAIALPAKLLVDITSRLPEG-EITLDDESATDGTATGEGLIVSLTPKTGKYQLR 119

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
           +    EFP     E   +  L ++ L   +  + FA + +E +  L G+   + ++ L+ 
Sbjct: 120 AMGAEEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQDTLEF 179

Query: 172 CAVATDGHRLAVAEVDIVAQIA---KMPSIIVPRKAVGEILRILSSKDSS---VKVSLSE 225
            A  TDGHRLAV E      +    +   + VP +A+ E+ R+L+   +S   + + L +
Sbjct: 180 AA--TDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQ 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++    ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   
Sbjct: 238 GQVIFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNI 297

Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           VKL++ S   +L ++ +  +MG   ESMN       ++I FN KYL+E +  + S E+
Sbjct: 298 VKLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPSPEI 355


>gi|312599849|gb|ADQ91850.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599851|gb|ADQ91851.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599853|gb|ADQ91852.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599855|gb|ADQ91853.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599857|gb|ADQ91854.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599859|gb|ADQ91855.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599861|gb|ADQ91856.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599865|gb|ADQ91858.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599867|gb|ADQ91859.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599869|gb|ADQ91860.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599871|gb|ADQ91861.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599873|gb|ADQ91862.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599875|gb|ADQ91863.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599877|gb|ADQ91864.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599879|gb|ADQ91865.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599881|gb|ADQ91866.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599883|gb|ADQ91867.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599885|gb|ADQ91868.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599887|gb|ADQ91869.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599889|gb|ADQ91870.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599899|gb|ADQ91875.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599905|gb|ADQ91878.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599907|gb|ADQ91879.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SARA30]
 gi|312599909|gb|ADQ91880.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599911|gb|ADQ91881.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599913|gb|ADQ91882.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599915|gb|ADQ91883.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599917|gb|ADQ91884.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599919|gb|ADQ91885.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599921|gb|ADQ91886.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599923|gb|ADQ91887.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599925|gb|ADQ91888.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599927|gb|ADQ91889.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599931|gb|ADQ91891.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599933|gb|ADQ91892.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
          Length = 184

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP+  + 
Sbjct: 26  GATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDW 82

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV 
Sbjct: 83  QSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVC 140

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            + + A +    S+IVPRK V E++R+L   ++ ++V +  + I 
Sbjct: 141 SMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIR 184


>gi|225620184|ref|YP_002721441.1| DNA polymerase III subunit beta [Brachyspira hyodysenteriae WA1]
 gi|225215003|gb|ACN83737.1| DNA polymerase III beta (beta clamp) subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 375

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 99/394 (25%), Positives = 194/394 (49%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    + DI++ +G    ++E K    +  +VL   +  +L + A+   +     I   
Sbjct: 1   MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRI--I 58

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQSFPE 115
           +D C   G++ V A  +  I++++ DG      +ENE   ++NI   +G +   +     
Sbjct: 59  LDDCEGEGAVAVYAKKISSILKEMPDGLITINVEENE---KINIESENGKTKHLIIGMKT 115

Query: 116 SEFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +FP+  E +   S+  L +  L  ++ +T  ++A E  +  L GI F   + D K  AV
Sbjct: 116 DDFPAYPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAV 173

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNI 232
           ATDG R+AV E +         SII+  K + EIL + ++ D    VK+ +   +++  +
Sbjct: 174 ATDGRRMAVIEREFEGVENGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQVYFQV 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
                   LI+G++PN++ VIP       RVN  +L  A+ R V +++ VR + + L++S
Sbjct: 233 GKYDFVSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVS 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + L +   N +MG+++E +++ Y+     + +NY Y+ ++I  I S     + V F ++
Sbjct: 293 EESLKVKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDS-----EIVTFMVN 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +S   ++  +++         + +Y++MPM I
Sbjct: 348 KDSSPTMVKEIERE---------DYYYIIMPMSI 372


>gi|158520111|ref|YP_001527981.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3]
 gi|158508937|gb|ABW65904.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3]
          Length = 377

 Score =  114 bits (285), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/399 (22%), Positives = 196/399 (49%), Gaps = 36/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++VE+ DI+E+L +   I  +++++ ++ ++L++     + + A+  E    G  PA+
Sbjct: 1   MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-------SF 113
           ++  G+I ++A   Y+IV+K+ D   I   +E +   +++ +   S    Q       SF
Sbjct: 61  IENEGTIAINARQFYEIVKKI-DSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHF--AMATEEIRYYLNGIFFHINEEDL-K 170
           P  + P   +  Y+   ++ S+  KN++       +  TE+  + +     +I +  + K
Sbjct: 120 P--QLPVIADVSYI---DVNSADFKNMILWATVITSSGTEKRAHVIGANLEYIKDGKIKK 174

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           +  V+TDG RL   E          P  S I+P+KA+ E+ + L   + ++++   ++  
Sbjct: 175 IRMVSTDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKD-EGTIQIGTRDNYF 233

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +   +  + + L+ GE+PN + +      + E+++N   L+  ++R+SI+++   + V 
Sbjct: 234 IVKNNNEIIYINLLSGEYPNLETLFSDEKGRTEIKINRKKLKDMLERMSILTTDNYKGVI 293

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            +   + L +   NPD G++ E M++ Y++  +   FN  Y ++ ++ I      DDEV 
Sbjct: 294 FTFEKNILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFIDAVNLIE-----DDEVC 348

Query: 348 FRLDSSNSSVFI-RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +L    +   +  GK  ++ N          ++MPM+I
Sbjct: 349 LKLKEDQAPCIVCGGKHPENIN----------IIMPMKI 377


>gi|331700397|ref|YP_004397356.1| DNA polymerase III subunit beta [Lactobacillus buchneri NRRL
           B-30929]
 gi|329127740|gb|AEB72293.1| DNA polymerase III, beta subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 379

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 166/342 (48%), Gaps = 20/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R+   + L    R I  K TIP+   + + A    L +  S  +I I   + A 
Sbjct: 1   MKFSIGRTAFTKGLNTVSRAISTKTTIPILTGLKIVAGPDGLVLTGSDADISIETTLKAD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +IV+KL          EN    +  I+ G S+F +   
Sbjct: 61  DPDNMLVIESEGAIVLPARFFTEIVKKLPKDTITLEVGEN---FQTMITSGQSSFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   S  LA+ + K ++ +T  A++ +E R  L G+ F I+  D  + A
Sbjct: 118 DANNYPHLPEIQTNDSIPLAADLFKQIISQTVVAVSNQESRPILTGVHFVIS--DNHVMA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +   I      ++P K++ E+ +++      V +S++E++    I 
Sbjct: 176 VATDSHRLSQRKVTLETPINGSYDFVIPGKSLTELSKMIDDGQDEVSLSVTENQALFVIG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           +     RL++G +P+   +IP S+D  +      L  A++R S++S   R   VK+++  
Sbjct: 236 NTLFYSRLLEGNYPDTTRLIPDSHDTRISFEAPELLAAIERASLLSHESRNNVVKITIDP 295

Query: 293 DKLCMTV--DNPDMGKA---IESMNVYYNECPMDICFNYKYL 329
           DK  +T+  ++PD+G     +E  ++  NE  ++I FN  Y+
Sbjct: 296 DKKTVTIYGNSPDVGNVEEDLEPKSLEGNE--LEISFNPDYM 335


>gi|312599863|gb|ADQ91857.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599891|gb|ADQ91871.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599893|gb|ADQ91872.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599895|gb|ADQ91873.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599897|gb|ADQ91874.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599901|gb|ADQ91876.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599903|gb|ADQ91877.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599929|gb|ADQ91890.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599935|gb|ADQ91893.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599937|gb|ADQ91894.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599939|gb|ADQ91895.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599941|gb|ADQ91896.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599943|gb|ADQ91897.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599945|gb|ADQ91898.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599947|gb|ADQ91899.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599949|gb|ADQ91900.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599951|gb|ADQ91901.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599953|gb|ADQ91902.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599955|gb|ADQ91903.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599957|gb|ADQ91904.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599959|gb|ADQ91905.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599961|gb|ADQ91906.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599963|gb|ADQ91907.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599965|gb|ADQ91908.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599967|gb|ADQ91909.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599969|gb|ADQ91910.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599971|gb|ADQ91911.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599973|gb|ADQ91912.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599975|gb|ADQ91913.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599977|gb|ADQ91914.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599979|gb|ADQ91915.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599981|gb|ADQ91916.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599983|gb|ADQ91917.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599985|gb|ADQ91918.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599987|gb|ADQ91919.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599989|gb|ADQ91920.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599991|gb|ADQ91921.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
          Length = 184

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 60/165 (36%), Positives = 96/165 (58%), Gaps = 6/165 (3%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP+  + 
Sbjct: 26  GATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDW 82

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV 
Sbjct: 83  QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVC 140

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            + + A +    S+IVPRK V E++R+L   ++ ++V +  + I 
Sbjct: 141 SMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRVQIGSNNIR 184


>gi|297558987|ref|YP_003677961.1| DNA polymerase III subunit beta [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843435|gb|ADH65455.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 379

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 103/396 (26%), Positives = 189/396 (47%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEIT--GA 56
           MK  VER  + E +    R +  + ++PV   +LL+A   DGL +++ SG + E++   A
Sbjct: 1   MKFRVERDVLAEAVAWTARTLPTRPSVPVLVGILLEAGEFDGLQQLRLSGFDYEVSTQAA 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +   V+  G++ V+  LL +I R L   AQ      +  G +V ++ G + F L + P  
Sbjct: 61  VDVEVEEPGTVLVTGKLLAEITRNLP--AQPVEISTD--GAKVVVTGGSAKFTLTTMPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+  E   V S  + S      V +   A   ++    L G+   I  E + L +  T
Sbjct: 117 DYPTLPEMPGV-SGTVGSDAFAAAVSQVAVAAGRDDTLPMLTGVRVEIEGETITLAS--T 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHL 230
           D +RLAV E     +   + ++ +VP K + +  + L+S  + V ++LS     E  I  
Sbjct: 174 DRYRLAVREFTWKPENPDLSAVALVPAKTLHDTAKSLTSG-AEVSIALSDGGSGEGMIGF 232

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                  + RL+DGEFP Y+ ++P + +    V+ +   +AV RVS+++  R   ++LS 
Sbjct: 233 EGGGRRTTTRLLDGEFPKYRALLPDTFNSVAEVSRSEFVEAVKRVSLVAE-RNTPLRLSF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S  +L +     +  +A+E +    +   + I FN  +LL+ +  I +D       V RL
Sbjct: 292 SQGQLVLEAGTGEEAQAVEVLEADLDGDDIQIAFNSGFLLDGLGAIGTD-------VARL 344

Query: 351 --DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +S     + GK  +  ++ + +    Y++MP+R
Sbjct: 345 HFTTSTKPSILTGKPAEEGSSPEYR----YLIMPVR 376


>gi|222152203|ref|YP_002561378.1| DNA polymerase III subunit beta [Streptococcus uberis 0140J]
 gi|222113014|emb|CAR40317.1| DNA polymerase III, beta chain [Streptococcus uberis 0140J]
          Length = 378

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 91/352 (25%), Positives = 176/352 (50%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ RS  ++ L    R I  KN IPV   + ++ +   + +  S  +I I   IP S
Sbjct: 2   IQFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSSTDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A+   +I+  L D   ++  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITDTGSILLEANFFINIISSLPD---VTLDFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171
               ++P  +E        L + +LK+L+  T FA +T+E R  L G+   + N +D K 
Sbjct: 118 KDVDQYPRLQEVSTDNPLVLETKLLKSLINETAFAASTQESRPILTGVHLTLSNHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++   + ++ + +   ++++P +++ E   + +    +V++  S S+I   
Sbjct: 177 -AVATDSHRMS-QRLLVLDKASTDFNVVIPSRSLREFSSVFTDDIETVEIFFSPSQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E++S   RL++G +P+   ++    + E   N   LR A++R  ++S + +   VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLLINQFETEATFNTQALRHAMERAFLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
             + +   V++P++GK  E +  V  +   + I FN  YL+E +  + S+ V
Sbjct: 295 KENTISAHVNSPEVGKVNEELEIVEKSGSDLTISFNPTYLIEALKALKSETV 346


>gi|111020656|ref|YP_703628.1| DNA polymerase III subunit beta [Rhodococcus jostii RHA1]
 gi|110820186|gb|ABG95470.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus jostii
           RHA1]
          Length = 394

 Score =  114 bits (284), Expect = 3e-23,   Method: Compositional matrix adjust.
 Identities = 100/400 (25%), Positives = 178/400 (44%), Gaps = 28/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R +  + +    R +  +  +PV   VLL A +  L +     E+     + A 
Sbjct: 6   LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI + L +   +    E   GT V I+ G + F L + P  ++P 
Sbjct: 66  VGSAGQVLVSGKLLADITKSLPN-KPVDVTLE---GTRVLITCGSAKFSLPTMPVEDYPQ 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  + + V    + +   A   ++    L GI   I    + L A  TD  R
Sbjct: 122 LPQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVLAA--TDRFR 178

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM- 237
           LAV E++   A      ++++P K + E  + L+   +S V+++L       N   L + 
Sbjct: 179 LAVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIV 238

Query: 238 ------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL+D EFP ++ ++P  +     V    L +A+ RV++++  R   V+L  S
Sbjct: 239 NDGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVAE-RGAQVRLQFS 297

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           ++ L ++    D G+A E +N  +   P+ I FN  YL   ID +SS  +  ++V+F   
Sbjct: 298 TEGLLLSAGGDDAGRAEEGLNAVFQGEPLTIAFNPGYL---IDGLSS--LHSEQVLFGFT 352

Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385
           + +    +R   +      DS N    +    Y+LMP+R+
Sbjct: 353 TPSRPAVLRPATEDEIEPDDSGNFAAPESAYTYLLMPVRL 392


>gi|323487686|ref|ZP_08092944.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2]
 gi|323398420|gb|EGA91208.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2]
          Length = 378

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 88/359 (24%), Positives = 171/359 (47%), Gaps = 28/359 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  ++E L    + +  K TIP+   + +  +   + +  S  +I I   IPA 
Sbjct: 1   MKFEIKRERLVEGLNDVMKAVSSKTTIPILTGIKMDVSSEGMRLTGSDSDITIQTFIPAE 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV------NISHGDS 106
            D          GSI + A +  +I+RKL           NE+  E+      +I  G S
Sbjct: 61  EDGEQIIQVTNGGSIVLQAKVFGEIIRKL---------PTNEVEIEITGNFQTHIRSGKS 111

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
            F+L      ++P   + +    F + + +LK +   T FA+++ E R  L G+ + +  
Sbjct: 112 EFHLIGLDAMDYPQLPDIQDDRLFTIPADLLKTINRETVFAVSSSETRPVLTGVHWEV-- 169

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
           +D +L  VATD HRLA  +  +        S+++P K++ E+ +IL     +V++ ++  
Sbjct: 170 KDGELVCVATDSHRLARRKTKLETLPEGEYSVVIPGKSLTELNKILDDTSEAVEIVMTNQ 229

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQA 285
           ++    + +    RL++G +P+   +IP      + VN  +L QA+DR S+++   R   
Sbjct: 230 QVLFKSKHILFFSRLLEGNYPDTSRLIPAEYKTTVTVNGRSLLQAIDRASLLAREERNNV 289

Query: 286 VKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVV 342
           V+ S      + ++ ++P++GK  E +     E   + I F+ K++++ +  I   +VV
Sbjct: 290 VRFSAKEGTDVEVSSNSPEVGKVEEQLQAQSIEGEELKISFSAKFMMDALKAIDGQDVV 348


>gi|157363350|ref|YP_001470117.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO]
 gi|157313954|gb|ABV33053.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO]
          Length = 367

 Score =  114 bits (284), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 181/370 (48%), Gaps = 26/370 (7%)

Query: 19  RIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDI 77
           + I  K   P+   +L   ++DG   + A+  E  +   + +  D  G   V A  +Y+I
Sbjct: 20  KTIPSKTIKPIMACILFDISHDGTF-LHATDLETGVKARMESEADGEGKFAVDAKTVYEI 78

Query: 78  VRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           VR L +  ++   F  N +  E     G S F L +    +FP         +  L +  
Sbjct: 79  VRTLPNEEEVLLEFSSNLMTLEC----GRSKFRLPTMDPGDFPEISLTTEGNTLMLDAKT 134

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           + +++ER  F  A +E    LNG+F+ I    L+L  VA+DG RLA++E  + AQ     
Sbjct: 135 INDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRL--VASDGFRLALSEERLNAQSES-- 190

Query: 197 SIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
           S ++  K++ E+  I+ S  DS + +     R+ LN + +   +R+++ +FP+Y+ V+P 
Sbjct: 191 SFLISLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMRVVEIDFPDYRKVLPK 250

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
           +   ++ +    + +A+ R  +++    ++V+L +S D L ++  +PD G+  E + +  
Sbjct: 251 AFKSKVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSRSPDYGEVNEEIPIKK 310

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
               + I FN  +LLE + ++ ++EV   E+ F +DS++            + N  N   
Sbjct: 311 EGEDITIAFNPLFLLEAMRHVHTEEV---ELNF-VDSTSP----------LQINPLNVEG 356

Query: 376 AFYVLMPMRI 385
             Y++MP+RI
Sbjct: 357 YLYIIMPIRI 366


>gi|42781777|ref|NP_979024.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987]
 gi|42737700|gb|AAS41632.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
          Length = 376

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 97/353 (27%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + AN   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAFIPILSGIKITANQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  MDDEQITTTLQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP SEFP+  + E     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPASEFPNVPQIEDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDYNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETQISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  ++IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  V   + E  + I F+ +++L+ +  I  + V
Sbjct: 293 NESTIKVSSNASQIGKIYETQQVDAIHGEKQLHISFDGRFMLDALRAIKEETV 345


>gi|16329463|ref|NP_440191.1| DNA polymerase III subunit beta [Synechocystis sp. PCC 6803]
 gi|2494196|sp|P72856|DPO3B_SYNY3 RecName: Full=DNA polymerase III subunit beta
 gi|1651945|dbj|BAA16871.1| DNA polymerase III beta subunit [Synechocystis sp. PCC 6803]
          Length = 391

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 102/405 (25%), Positives = 185/405 (45%), Gaps = 36/405 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLL+A+     L + A    + I  +  
Sbjct: 1   MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTE--VNISHGDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L DG   ++   + + G      I+     F ++    
Sbjct: 61  ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLDA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            +FP+    E V    L  + L   +    FA +T+E +  L G+  HI      L   A
Sbjct: 121 DDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGV--HIKGSGDSLEFAA 178

Query: 176 TDGHRLAVAEVDIVAQIAKMPSII-----------VPRKAVGEILRILSSKDSSVKVSL- 223
           TDGHRLAV E     +  +  ++I           +P +A+ E+ R+++S+ +S  VSL 
Sbjct: 179 TDGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLV 238

Query: 224 -SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
            +++++   +    ++ R ++G +P Y  +IP    + + +    L  +++RVS+++  +
Sbjct: 239 VNDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQK 298

Query: 283 IQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              V  +L S  ++L + V+  D+G   ESM          I FN KYL++ +  + S  
Sbjct: 299 NNLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPS-- 356

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +++  +L+  N  V                +   Y++MP+R+
Sbjct: 357 ---NDIQMQLNEGNQPVIF---------TPLGGLKMTYLVMPVRL 389


>gi|332654820|ref|ZP_08420562.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16]
 gi|332516163|gb|EGJ45771.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16]
          Length = 368

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 168/343 (48%), Gaps = 11/343 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + E++ +   +  A R +  K++IP    +L++A D  L +     E  I   +PA 
Sbjct: 1   MKFSCEKALLTAAVSIASRAVAAKSSIPAMEGILIEA-DTRLRLTGYNLETGIQATVPAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ +SA L  +I+RK+ D   + F  ++ +   VNI  G S F +      EFP 
Sbjct: 60  IKQPGSLVLSARLFGEIIRKMPDDV-VVFTSKDYM---VNIKCGMSEFNILGTDPEEFPE 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   S  L  S L++++ +T FA++  E R    G  F ++  DL +  V+ DG+R
Sbjct: 116 LPTVDQQNSITLEQSALRSMIAQTLFAVSDNESRPVHTGSLFEVDHNDLTV--VSVDGYR 173

Query: 181 LAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA+   + D +    +  S +VP  A+ E+ +I S  +  V V+     I        + 
Sbjct: 174 LALRREKADKIGGSEQF-SFVVPGSALSEVEKICSG-EGPVTVNQGARHILFQAGDTVLV 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R ++GEF  Y+N IP +N  +++ +   L  +++RVS++ S ++++    +  D +   
Sbjct: 232 CRRLEGEFLPYRNAIPRNNPIQIQCDTRALLSSIERVSLIISEKLKSPLRCVFGDGMVDI 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                +G A +   +  +   ++I FN KYL++ +    +D++
Sbjct: 292 TTKTAIGDAADQCPIDGDGQGLEIGFNNKYLMDALKAAPADKL 334


>gi|226354812|ref|YP_002784552.1| DNA polymerase III subunit beta [Deinococcus deserti VCD115]
 gi|226316802|gb|ACO44798.1| putative DNA-directed DNA polymerase (DNA polymerase III, beta
           subunit) [Deinococcus deserti VCD115]
          Length = 360

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 95/353 (26%), Positives = 176/353 (49%), Gaps = 38/353 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V +  + E L    R+I  +++ P+   + ++  +  L +  +  EI+++  +PA 
Sbjct: 1   MKANVTKKTLSEGLSLLERVIPGRSSNPLLTALKVETTEAGLTLSGTNLEIDLSCFVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQ-------- 111
           V    +  V AHL   IVR L  G ++    E E+ G E+++  G S+F LQ        
Sbjct: 61  VQQPQNFVVPAHLFAQIVRNL--GGELV---ELEITGNELSVRSGGSDFKLQTGDIEAYP 115

Query: 112 --SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
             SFPE    S   EE   +F   SSV         +A + E  +    GI      E  
Sbjct: 116 PLSFPEHADVSLNAEELAKAF---SSV--------RYAASNEAFQAVFRGIKLEHRPESA 164

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           ++  VA+DG+R+A+   D  A      ++I+P ++  E++R+L  KD   + +  E  + 
Sbjct: 165 RV--VASDGYRVAIR--DFPAS-GDGRNLIIPARSADELIRVL--KDGEARFTYGEGLLS 217

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKL 288
           +  + + M+++L+DG+FP+Y+ VIP     ++ +  T L++AV+RV++++       V+ 
Sbjct: 218 VTTDRVRMNLKLLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEF 277

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSD 339
            +S  KL +  +  D G+A ++++V     E  M + FN +++L+ +  I  D
Sbjct: 278 LVSEGKLRLAAEG-DYGRAQDTLDVVQGGSEPAMSLAFNARHVLDALGPIEGD 329


>gi|218290895|ref|ZP_03494959.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239162|gb|EED06364.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 370

 Score =  113 bits (283), Expect = 4e-23,   Method: Compositional matrix adjust.
 Identities = 93/364 (25%), Positives = 177/364 (48%), Gaps = 17/364 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +   L    RI + +    V   VL++A  G + + A   ++ +   + AS
Sbjct: 1   MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLMEAERGQVTLSAYDYDVALRMTVEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A L  ++VR+L  G   I+    + L   +++  G ++  L  F   EFP
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDV--GTTHAELHGFDPEEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDG 178
              +   +   E+++  L   +E   +A + ++  R  L G++  +  ED KL  +ATDG
Sbjct: 119 DLPDMTGIVPVEISAKTLVEAIESVGYAASKQDASRPILEGVY--VGYEDGKLIWMATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESL 235
            RLA     +   + +  SI   +PR+A+ E+ R+L + D ++++V  S S +      +
Sbjct: 177 LRLA----KVSQTVDREMSIRCTIPRRALTELTRLLDADDDATLQVYQSASYVMFTWNGV 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL  GE+P+   V+P     E  V+   L++AV+RV++M+      V L +    L
Sbjct: 233 QLFGRLYQGEYPDTSRVMPREFAAECTVDRRRLKEAVERVTVMAEHEHHTVSLYVKGGAL 292

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            +T  + + G+A E +  V +    + +  N +Y+LE+++ + S +VV  +V       N
Sbjct: 293 ELTSRSTERGRAREEVPLVEFAGDEIKVSLNARYVLEMLEAVESSKVVRMQVA---QGRN 349

Query: 355 SSVF 358
           S +F
Sbjct: 350 SVLF 353


>gi|312873272|ref|ZP_07733327.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091152|gb|EFQ49541.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 376

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVTTNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|315654132|ref|ZP_07907048.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           ATCC 55195]
 gi|315488828|gb|EFU78474.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           ATCC 55195]
          Length = 380

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 5   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 65  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 121

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 179

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 300 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 354

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 355 PLRPFVVVPKDSDEK 369


>gi|110589514|gb|ABG77266.1| DNA polymerase III beta-subunit DnaC [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 188

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 51/160 (31%), Positives = 104/160 (65%), Gaps = 2/160 (1%)

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207
           MA +++RYYLNG+   I+   +K   VATDGHRLA +++  +        +I+PRKA+ E
Sbjct: 1   MAQQDVRYYLNGLLLEISNGIIK--TVATDGHRLAFSQIKAIENYELKTQLIIPRKAIIE 58

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267
           + R+L   +++++  +S + + ++++    + +LIDG FP+Y+ VIP +N+ +L ++ + 
Sbjct: 59  LYRLLDESENTIRFEVSSNYVRVHLDRTIFTSKLIDGVFPDYEKVIPKNNENKLVMDKSE 118

Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           L++++ R SI+S+ + + +KL +  D++ +  +NP+  +A
Sbjct: 119 LKKSLRRASILSNEKYKGIKLEIKEDRVQIIANNPEQEEA 158


>gi|259500776|ref|ZP_05743678.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           DSM 13335]
 gi|259167470|gb|EEW51965.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           DSM 13335]
          Length = 380

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 5   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 65  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 121

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 179

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 300 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 354

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 355 PLRPFVVVPKDSDEK 369


>gi|329919782|ref|ZP_08276733.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G]
 gi|328937129|gb|EGG33557.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G]
          Length = 376

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|169830221|ref|YP_001716203.1| DNA polymerase III subunit beta [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637065|gb|ACA58571.1| DNA polymerase III, beta subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 389

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/370 (25%), Positives = 174/370 (47%), Gaps = 36/370 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---- 56
           M+    R  +L  +    R + +K+ +     +L +A  G    +A    + +TG+    
Sbjct: 1   MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAG----EAGQQGVSLTGSNMDL 56

Query: 57  -----IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                IPA V V G++ + A  L +IVR+L D   +S   +++  + V +++G +   L 
Sbjct: 57  TIRRIIPAGVTVSGAVVLPARQLAEIVRRLPD-VPVSITADHQKNS-VELTYGRARALLN 114

Query: 112 SFPESEFPSTKEE-------------EYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
            +  +EFP   +                       S V  NL  R  +A  T+++R    
Sbjct: 115 GYSAAEFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFT 174

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILS-SK 215
           G+   I+E +++  AVATD HRLA+  VD   +    KM  +IV  +A+GE++R+LS ++
Sbjct: 175 GVLLEIDEGEIR--AVATDTHRLAMHRVDYEGEPENRKM-QVIVSGRALGELVRVLSQAE 231

Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR-VNCTNLRQAVDR 274
           +   +V+++E+ I  ++    +  RLI G +P+Y+ VIP  +   +  +    L Q V+R
Sbjct: 232 EEQFEVTIAENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVER 291

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
            + ++      + L L    L +T  + + G   E + V      ++I FN KYL E + 
Sbjct: 292 AATLAQDGSPVINLHLGQGLLGVTAQS-EAGSIHEEIPVELAGQELEISFNAKYLEEALR 350

Query: 335 NISSDEVVDD 344
              S +++ D
Sbjct: 351 WCESTQLILD 360


>gi|302190773|ref|ZP_07267027.1| DNA polymerase III, beta chain [Lactobacillus iners AB-1]
 gi|309807871|ref|ZP_07701803.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|312872661|ref|ZP_07732726.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|325913673|ref|ZP_08176035.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B]
 gi|308168973|gb|EFO71059.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|311091703|gb|EFQ50082.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|325477032|gb|EGC80182.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B]
          Length = 376

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|227498787|ref|ZP_03928927.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904239|gb|EEH90157.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 372

 Score =  113 bits (283), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 85/345 (24%), Positives = 161/345 (46%), Gaps = 7/345 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ + E + + + +    + I      P+   + +  N   LE+ A      +   +  +
Sbjct: 1   MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSMKKVLEVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G I V A  L D++ K      I    + E   E+ ++     +++      ++PS
Sbjct: 61  GNEDGVILVPAQSLGDLLAKFS--TDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPS 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L   +L  L+ +T +A +T+E R    G+F  + ++   +  V T+ HR
Sbjct: 119 FPEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVF--MEKKGQHITCVGTNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+   D         S+++P + + EI   L+ +    V +   +S+I + + SLS+  
Sbjct: 177 LAIKSADPETADDSEYSLLIPARVLKEIANNLTGELPEDVAIIQKDSKILVRMGSLSLVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G FP+Y   IP S      +N  +L +A+ RVS+ +      ++L++ +D++ ++ 
Sbjct: 237 SLIEGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSS 296

Query: 300 DNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
              D G+ +E M       E P++I FN KYL++   NIS D+VV
Sbjct: 297 AASDRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISCDQVV 341


>gi|271961611|ref|YP_003335807.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270504786|gb|ACZ83064.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 379

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 186/399 (46%), Gaps = 36/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M   +ER  + E +    R +  + ++PV   + L+  +   ++K SG + E++  +   
Sbjct: 1   MMFRIERDVLAEAVAWTARSLPARPSVPVLAGMRLEVTE-KGQLKLSGFDYEVSAEVTLE 59

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQ-ISFFKENELGTEVNISHGDSNFYLQSFPES 116
           P S +  G + VS  LL +I R L   AQ + F  E   G +  ++ G + F L + P  
Sbjct: 60  PQSGE-AGVVLVSGRLLAEITRALP--AQPVDFVVE---GAKAVVTCGSARFTLLTMPVE 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++PS           + S V  + V +   A   ++    L G+   I  + + L A  T
Sbjct: 114 DYPSLPTMPPAAG-RVGSDVFASAVGQVAVAAGKDDTLPMLTGVRMEIEGDTVTLAA--T 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIH 229
           D +RLAV E+          +I ++P K + +  + L S  + V+V++S      E  I 
Sbjct: 171 DRYRLAVRELKWQPGQPDFSAIAMIPGKTLADAAKALGSTGAEVEVAMSSVGGTGEGMIG 230

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
            +      + RL+D EFP Y++++P        ++ +   +AV RV++++  R   V+L+
Sbjct: 231 FSSAGRRTTTRLLDPEFPKYRSLLPTEFSARADLSTSAFVEAVKRVALVAE-RNTPVRLA 289

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              D++ +   + D  +A+E + V +    ++I FN+++LLE +  I SD       V R
Sbjct: 290 FRGDEVVLEAGSGDEAQAVEVLPVDFEGDDINIAFNHQFLLEGLGAIDSD-------VAR 342

Query: 350 LD---SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L    S+  ++   GK  D     D +    Y++MP+R+
Sbjct: 343 LQMTTSTKPAILTGGKHVDDGGVPDYR----YLIMPIRL 377


>gi|309805919|ref|ZP_07699951.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167695|gb|EFO69842.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 376

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|163848190|ref|YP_001636234.1| DNA polymerase III subunit beta [Chloroflexus aurantiacus J-10-fl]
 gi|222526095|ref|YP_002570566.1| DNA polymerase III subunit beta [Chloroflexus sp. Y-400-fl]
 gi|163669479|gb|ABY35845.1| DNA polymerase III, beta subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222449974|gb|ACM54240.1| DNA polymerase III, beta subunit [Chloroflexus sp. Y-400-fl]
          Length = 377

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 184/396 (46%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDI---LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57
           MK+T  + D+   L  +GHA   +  K+T+PV  ++LL  ++G L++ A+  E+ I   I
Sbjct: 1   MKLTCMQEDLKRGLAAVGHA---VAGKSTLPVLANILLATDEGRLKLTATNLEVGINRWI 57

Query: 58  PASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            A++   G++ V A LL D+V  L  D   +S  ++ +    + +  G     ++     
Sbjct: 58  SATITRDGAVAVPAKLLTDVVGGLPNDKVTLSLDQKTQ---TLRVECGRFVSNIKGVDAD 114

Query: 117 EFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           EFPS            L + V +  +++  FA AT+E R  L G+     ++ + L  VA
Sbjct: 115 EFPSLPTVSAQTPLVSLPAEVWQEAIDQVAFAAATDESRPILTGVLVRTRDQQVTL--VA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--NIE 233
            DG RLA+  + + A +A     ++P + + E+ RI+   D+ V +  +    H+  + E
Sbjct: 173 ADGFRLAMRTIQLSAPVAHAVDCLIPARTLSELARIIGDTDAEVAMVYTPGGSHVLFHTE 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS---- 289
           ++ +  RLI+G FP+++ +IP      + ++ + L +AV   S  +      VKL     
Sbjct: 233 NIEVVSRLIEGRFPDFERIIPQQYLTRMVLDNSELAKAVKLASFFAGSSQNVVKLKIEPA 292

Query: 290 --LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             L+  ++ ++ +  ++G     ++         I  N ++L + I  + S     +++ 
Sbjct: 293 SELAPGRVVISANAAELGDNTSELDGSVTGEGGVIALNVRFLADAIAAVHS-----NQIA 347

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           F + S+ S    +   +D            +++MPM
Sbjct: 348 FEMQSAQSPAVFKPVGQDGY---------IHIVMPM 374


>gi|297582340|ref|YP_003698120.1| DNA polymerase III subunit beta [Bacillus selenitireducens MLS10]
 gi|297140797|gb|ADH97554.1| DNA polymerase III, beta subunit [Bacillus selenitireducens MLS10]
          Length = 380

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/361 (25%), Positives = 171/361 (47%), Gaps = 32/361 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++R   ++ +    + I  + TI +   + + A+   + +  S  ++ I   IP  
Sbjct: 1   MKFTIQRDAFVQSVADVSKAISPRTTIQILTGIKIVADQDGITLTGSDSDLSIESFIPKE 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDS 106
            D          GSI + A    D+++KL          E  +   VN      I+ G S
Sbjct: 61  KDGEELVNIQEEGSIVLQARFFGDMIKKL---------PETSIEVAVNDQFIAQITSGGS 111

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
            F +      E+P   + E    F +  ++LK L+ +T FA+++ E R  L GI +H+  
Sbjct: 112 VFNINGIDPDEYPRLPDVEEADLFRMPKNLLKTLIRQTAFAVSSVETRPILTGIHWHL-- 169

Query: 167 EDLKLCAVATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS 224
           ED  L   ATD HRLA+  A+VD         ++++P K + E+ +IL+  D  ++V ++
Sbjct: 170 EDSVLTCTATDSHRLAMRMAKVDDNENNLSFSNVVIPGKTLTELNKILNDTDELLEVVVA 229

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS---SV 281
            ++I    +   +  RL++G +P  +N+IP  +   +++    L  A++R  ++S     
Sbjct: 230 GNQILFKGDYFLLYSRLLEGNYPATKNMIPTGSKTSVKLETKRLLDAIERALLLSREGKN 289

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDE 340
            +  VK +L S +L +T   P++GK  E +    Y    + I FN K L++ +  + + E
Sbjct: 290 NVVHVK-NLESGELEITSVTPEVGKVTEHVTTMSYEGDELKISFNGKNLIDALRVMEASE 348

Query: 341 V 341
           V
Sbjct: 349 V 349


>gi|251781470|ref|YP_002995771.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390098|dbj|BAH80557.1| DNA polymerase III, beta chain [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 378

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 175/354 (49%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IPV   + +  +   + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIQALNATKRGISSKNAIPVLSTIKINVSSSDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A+   +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EIAQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|309804912|ref|ZP_07698974.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|309809746|ref|ZP_07703600.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308165851|gb|EFO68072.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308169925|gb|EFO71964.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 376

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 92/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|317496619|ref|ZP_07954966.1| DNA polymerase III [Gemella moribillum M424]
 gi|316913284|gb|EFV34783.1| DNA polymerase III [Gemella moribillum M424]
          Length = 379

 Score =  113 bits (282), Expect = 5e-23,   Method: Compositional matrix adjust.
 Identities = 93/355 (26%), Positives = 175/355 (49%), Gaps = 20/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+E+S+ L  L H  R+I   +   +   + L+ N+ +L +KAS   + +  +I A 
Sbjct: 1   MKFTIEKSNFLAGLNHVARVIAPNSLFEILKGIKLELNENVLVLKASDSLVSVEFSIDAY 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  G + + +    +I+RK    A  +  +   +   + +  G S F ++ 
Sbjct: 61  DDDKEIITIEEEGQVVLPSRNFIEIIRK----APTNLIEIETIDNNILVKSGKSEFNVKG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +  +E+P        +S  L   V  ++++ T F  A  + R  L G+ F +N +   L 
Sbjct: 117 YDANEYPEFPVISKEHSLTLDGKVFNDIIKETVFCTAPNDQRPILEGVNFTLNNK--VLT 174

Query: 173 AVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           A ATD +RL+  ++ +  ++A  K  ++I+PRKA+    R++      V++    +RI L
Sbjct: 175 ATATDSYRLSRRQITL-EEVADDKEFNLIIPRKALTYFQRMIEEGKDQVEIFYENNRIVL 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
             +++  +V LI G +PN   +IP   +     N   L  AVDRVS+MS   +   +KL 
Sbjct: 234 YYQNVVYTVLLISGNYPNTNKLIPTVFECTFVSNGRELFDAVDRVSLMSREDKDDIIKLI 293

Query: 290 LSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +  + L ++  + D+G A+E + V     E   +I  + +YL E I  I+S+E++
Sbjct: 294 VKDNMLEISSQSKDLGSAVEEIKVESTLEEDVFEISVSGRYLKEAIYAIASEEII 348


>gi|323126261|gb|ADX23558.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 378

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 175/354 (49%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IPV   + +  +   + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIQALNATKRGISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A+   +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGSILLEANFFINIISSLPD---VSLDFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EIAQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|56961784|ref|YP_173506.1| DNA polymerase III subunit beta [Bacillus clausii KSM-K16]
 gi|56908018|dbj|BAD62545.1| DNA-directed DNA polymerase III beta subunit DnaN [Bacillus clausii
           KSM-K16]
          Length = 380

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/355 (25%), Positives = 171/355 (48%), Gaps = 20/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + +ER+ ++  + H  + +  + TIP+   + L A+   L +  S  ++ I   IP  
Sbjct: 1   MHVIIERNRMVHDVQHVAKAVSSRTTIPILTGIKLVADANGLTLTGSDSDLSIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + +    +IV+KL  G  I     ++      I  G S F L  
Sbjct: 61  ENEREIVQIEQAGSIVLQSKYFAEIVKKL-PGETIEIQVHDQFA--ATIRSGSSVFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + +    F L   +L+N++ +T FA++T+E R  L G+  +I  E+ +L 
Sbjct: 118 LDPEEYPRLPQLKEDLIFSLPQDMLRNIIRQTVFAVSTQETRPVLTGV--NIETENGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+ +  I +Q   +   ++++P K++ E+ +IL       ++ ++E++I  
Sbjct: 176 CTATDSHRLAMRKTKIDSQDEGLEFKNVVIPGKSLQELSKILEDTSDLAEIVVTENQILF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVK 287
            + +L    RL++G++P    +IP        V    L   ++R  ++S      +  VK
Sbjct: 236 KLGNLLFFSRLLEGKYPVTSGMIPTQFKTSFVVKTKELVHTLERAMLLSREAKNNVINVK 295

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            +L  +++ +T  + ++GK  E M    +    + I FN K +L+ +  + SDEV
Sbjct: 296 -TLGDNQIEITSTSQEIGKVTEKMATDQFEGDEIRISFNGKNILDALKVVDSDEV 349


>gi|300871560|ref|YP_003786433.1| DNA polymerase III subunit beta [Brachyspira pilosicoli 95/1000]
 gi|300689261|gb|ADK31932.1| DNA polymerase III, beta subunit [Brachyspira pilosicoli 95/1000]
          Length = 375

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 192/398 (48%), Gaps = 39/398 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    + DI++ +G    ++E K    +  +VL      +L + A+       G++ A 
Sbjct: 1   MKFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTAT------DGSVWAR 54

Query: 61  VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQ 111
             +        G++ V A  +  I++++ DG      +ENE   ++NI   +G +   + 
Sbjct: 55  SRIMLDDYEGEGTVAVYAKKISSILKEMPDGMITINVEENE---KINIESENGKTKHLII 111

Query: 112 SFPESEFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                +FPS  E     ++  L +  L  ++ +T  ++A E  +  L GI F   + D K
Sbjct: 112 GMKTDDFPSYPESNGDINYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSK 169

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRI 228
             AVATDG R+A+ E +     A   SII+  K + EIL + ++ D    VK+ +   ++
Sbjct: 170 FLAVATDGRRMAIIEREFEGIDAGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQV 228

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVK 287
           +  +        LI+G++PN++ VIP       RVN  +L  A+ RV  +++ VR + + 
Sbjct: 229 YFQVGKYDFVSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRVVPMINDVRSKRMI 288

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L++S + L +   N +MG+++E +++ Y      + +NY Y+ ++I  I S     + V 
Sbjct: 289 LTVSEESLKVKGINQEMGESLEEIDIKYTGEEHSVAYNYTYIQDVIKQIDS-----EIVT 343

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F ++  +S   +R  +++         + ++++MPM I
Sbjct: 344 FMVNKDSSPTIVREIERE---------DYYFIIMPMSI 372


>gi|326202773|ref|ZP_08192640.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325986850|gb|EGD47679.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 366

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 171/340 (50%), Gaps = 9/340 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + ++L  +    + +  K T+P+   +LL A D   ++  +  EI I   + A 
Sbjct: 1   MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNAEDKF-KLTGNDLEIGIECYVEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ +  DIVR+L D   +     N L   V +   +S+F ++    S +PS
Sbjct: 60  IRSTGSIVINSKIFGDIVRRLPDAEVLIEVTVNNL---VVVECENSHFEIKGINPSGYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L    LK+++ +T FA+ ++E R  L G    +  +D +L  V+ DG R
Sbjct: 117 LPVVDKENVLTLTQGDLKDMIRQTVFAVGSDENRPVLTGSLIEV--KDKELVIVSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I    S+I+P K + EI +IL + D  V V  S +++  + +S  +  R
Sbjct: 175 LALRRKILENDINDF-SVIIPGKTLNEISKILQATDDEVSVYSSNNQVVFDAKSWRIVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LI+G+F NY +++    + ++ +N    + +++R S++S + +   VKL + +DK+ +T 
Sbjct: 234 LIEGKFLNYNSLLNKDFETKVVINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIVIT- 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
            N D+G   E +        ++I +N  +L++ +  I  D
Sbjct: 293 SNADLGNVREEVKAEIEGNSLEIGYNPAFLIDALKAIDED 332


>gi|296125981|ref|YP_003633233.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563]
 gi|296017797|gb|ADG71034.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563]
          Length = 375

 Score =  113 bits (282), Expect = 6e-23,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 192/394 (48%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    + DI++ +G    ++E K    +  +VL      +L + A+   +     I   
Sbjct: 1   MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTATDGSVWARSRI--I 58

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS--HGDSNFYLQSFPE 115
           +D C   G++ V A  +  I++++ DG      +ENE   ++NI   +G +   +     
Sbjct: 59  LDDCEGEGAVAVYAKKISSILKEMPDGLITINVEENE---KINIESENGKTKHLIIGMKT 115

Query: 116 SEFPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +FP+  E     S+  L +  L  ++ +T  ++A E  +  L GI F   + D K  AV
Sbjct: 116 DDFPAYPESNGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAV 173

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNI 232
           ATDG R+AV E +         SII+  K + EIL + ++ D    VK+ +   +++  I
Sbjct: 174 ATDGRRMAVIEREFEGVENGSFSIIIEPKVLNEIL-VTANYDEVEQVKMGVDGQQVYFQI 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
                   LI+G++PN++ VIP       RVN  +L  A+ R V +++ VR + + L++S
Sbjct: 233 GKYDFVSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVS 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + L +   N +MG+++E +++ Y+     + +NY Y+ ++I  I S     + V F ++
Sbjct: 293 EESLKVKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDS-----EIVTFMVN 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +S   ++  +++         + +Y++MPM I
Sbjct: 348 KDSSPTMVKEIERE---------DYYYIIMPMSI 372


>gi|307719923|ref|YP_003891063.1| DNA polymerase III subunit beta [Sulfurimonas autotrophica DSM
           16294]
 gi|306978016|gb|ADN08051.1| DNA polymerase III, beta subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 355

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 103/350 (29%), Positives = 173/350 (49%), Gaps = 33/350 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MKITV +S +  +L HA   +E+K+T  ++ HV +  ++  L +KA+  EI  +      
Sbjct: 1   MKITVSKSILENILIHASPFLEKKDTSQITSHVYMNVSNSELTLKATDYEIGFLVSTDNL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN-----ISHGDSNFYLQSFP 114
            ++  GSIT +     DIVR L+D         +E+  EV      IS G SNF L +F 
Sbjct: 61  KIEKEGSITANGKKFLDIVRILKD---------DEINLEVKNDNLLISQGHSNFKLPTFS 111

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +EFP     E      + S  L   +++   A+ T   ++ LNG    I +  +     
Sbjct: 112 YNEFPEFPAYEGKPRISIESHTLIESLKKITPAIDTNNPKFELNGALIDIQKNSINFA-- 169

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD  RLAV  +D   Q     SII+P+KA+ EI ++      ++++   E+ + ++ + 
Sbjct: 170 ATDTRRLAVVTID--NQSDNELSIIIPKKAIVEIQKLFF---DNIELYYDETNLIIHSQQ 224

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293
            +   +LI+G+FP Y  +IP    KE + N   L +A+   SI     I   +K++  +D
Sbjct: 225 YTFFTKLINGKFPEYSRIIP----KETKYNLV-LPKAIMIDSIKQITTISTDLKITFMND 279

Query: 294 KL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            +    ++ DN +    I S N  +++ P  I  N KYLL+ +++I+S E
Sbjct: 280 IISFESLSDDNIEAKTEI-SYNTGFSK-PFSIAINSKYLLDFLNSINSSE 327


>gi|258510022|ref|YP_003183456.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476748|gb|ACV57067.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 374

 Score =  113 bits (282), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 93/331 (28%), Positives = 158/331 (47%), Gaps = 21/331 (6%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           ++  A D  L I+   P  E TG     V   G+I + A    DIVRKL D  +I    +
Sbjct: 42  IVATAYDLELAIQTRVPVGEETGL---RVHQTGAIVLPARYFGDIVRKLPD-TEIHMRVD 97

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
               TE  IS     F+L      EFP         S ++ +S L  L+E T FA AT E
Sbjct: 98  ANYMTE--ISAQSVEFHLHGIDAEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSE 155

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILR 210
           +R  L G+   I  +   L  +ATDG RLA   V      A +P   +++P K++ E+ +
Sbjct: 156 VRPVLTGV--SITSDPTHLTFIATDGLRLAQHRVPQ----ADLPERQVVIPAKSLSELSK 209

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           IL   ++SV++ L+ S     I       RL++G +P+   +IP S   ++ ++      
Sbjct: 210 ILPEDETSVEMVLTPSHGLFVIGPTRFYTRLLEGTYPDTSRLIPRSARTQVVLDGDAFLH 269

Query: 271 AVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKY 328
           A+DR ++++  +    V+L ++ D L +T  +P++G   E+++    E   + I FN +Y
Sbjct: 270 AIDRAALIARDKDNHMVRLEVTGDTLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRY 329

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           ++E +  + +      E+  R + +N +  I
Sbjct: 330 VIEAVRALDA-----AEIAIRFNGANQAFVI 355


>gi|313157008|gb|EFR56440.1| DNA polymerase III, beta subunit [Alistipes sp. HGB5]
          Length = 374

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 99/390 (25%), Positives = 191/390 (48%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK +V  S +L LL    ++I  KNT+P+  + L++ +   L++  S  E  + G+I   
Sbjct: 1   MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELSGNELKVTTSDLETTLIGSITVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           SV+  G+I   A L+ D +++  +         N+   E+ I+    +  +       +P
Sbjct: 61  SVESEGTIAAPAKLMLDSLKEFSELPLT--IDVNDKNWEITINWKSGSLSIPGASAVSYP 118

Query: 120 STKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +  +   E+   S ++ +  L N + +T FA A +E+R  +NGI+  IN     L  V T
Sbjct: 119 AVPQLSAEKKELSMDVDT--LVNGINKTIFATADDELRPVMNGIY--INLAPGALTFVGT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+L   E +   ++    S I+P+K    +  +L  +D ++++S         ++S +
Sbjct: 175 DAHKLVKYESETANEVTA--SFILPKKPANLLKSVLLKEDDAIEMSFDSKNALFKLKSHT 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLI+G +PNY  VIP +N  ++ V+   L   + RV++ S+     +++ +  +++ 
Sbjct: 233 LVCRLIEGNYPNYNAVIPANNPNKVLVDRVELVNGIKRVAVCSNPTTNLIRMDIGDNRIN 292

Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +T  + D    A E+++  Y+   + I F   +L+EI+ N+ +  V    V+   DS+ +
Sbjct: 293 LTAQDIDFSVSANETISCSYDGEEITIGFKSTFLVEILSNMDTPTV----VIELADSTRA 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            VF     K   ++K    +   +LMPM I
Sbjct: 349 GVF-----KPVYDDKQTS-STLMLLMPMMI 372


>gi|254456728|ref|ZP_05070156.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1]
 gi|207085520|gb|EDZ62804.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1]
          Length = 355

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 97/342 (28%), Positives = 175/342 (51%), Gaps = 17/342 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59
           MKI V +S I  +L +A   +E+K+T  ++ HV +  ND  L +KA+  EI         
Sbjct: 1   MKIIVSKSIIENILVYAQPFLEKKDTSQITSHVYINVNDSKLTVKATDYEIGFEVSTDKV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S+   GSIT +   L DI+R L+DG +I+   +N++   ++IS   SNF L +F  +EFP
Sbjct: 61  SIISTGSITANGKKLLDIIRILKDG-EINLEIKNDM---LHISQSHSNFKLPTFSYNEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E      + S  L   +++   A+ T   ++ LNG    I ++ +     +TD  
Sbjct: 117 EFPSYEGKSRISIESHSLIESLKKITPAIDTNNPKFELNGALIDIKQDSINFA--STDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  V+I  Q     SII+P+KA+ EI ++      ++++   ++ + ++ +  +   
Sbjct: 175 RLAI--VNIPNQSVSELSIILPKKAIIEIQKLFF---DNIELYYDDTNLIIHSDQYTFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           +LI+G+FP Y  ++P      L +    +  ++ +++ +SS V+I  +   ++ + L   
Sbjct: 230 KLINGKFPEYSRIVPKEVSNTLILPKAIMIDSIKQITTISSDVKITFLNNYITFESLS-- 287

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            D+    K   S N  + E P  I  N KYLL+ +++I+S E
Sbjct: 288 -DDNIEAKTEISYNTGFEE-PFVIAINSKYLLDFLNSINSSE 327


>gi|325677519|ref|ZP_08157183.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC
           33707]
 gi|325551766|gb|EGD21464.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC
           33707]
          Length = 394

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 178/403 (44%), Gaps = 34/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D  + +    R +  +  +PV   VLL A++  L +     E+     + A 
Sbjct: 6   MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V   G + VS  LL DI R L +       K  ++   GT V I+ G + F L + P  +
Sbjct: 66  VTTTGQVLVSGKLLADITRALPN-------KPVDVTVDGTRVLIACGSAKFSLPTMPVED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P         +  L   +    V +   A   ++    L GI   I   D+ L   ATD
Sbjct: 119 YPQLPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVLA--ATD 175

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKD-SSVKVSL-------SESRI 228
             RLAV +++ +     +  +++VP + + E  + L     S V+++L       +E  +
Sbjct: 176 RFRLAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLSPVELALGAGASVGTEGML 235

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            +  +    + RL+D EFP ++ ++P  +     V    L  A+ RV++++  R   V+L
Sbjct: 236 GIVADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVAE-RGAQVRL 294

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             +S+ L ++    D G+A E++   +   P+ I FN  YL++ ++++ S     + V F
Sbjct: 295 EFNSEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTF 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNA------FYVLMPMRI 385
              + +    +R   ++     ++   A       Y+LMP+R+
Sbjct: 350 GFTTPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392


>gi|304439077|ref|ZP_07398996.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372436|gb|EFM26023.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 358

 Score =  112 bits (281), Expect = 7e-23,   Method: Compositional matrix adjust.
 Identities = 94/344 (27%), Positives = 171/344 (49%), Gaps = 16/344 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    + ++ + +  A R +  + T+ +   +LL A D  L +  +  ++ I   +   
Sbjct: 1   MKFRASKQELSKHIQIAQRAVSSRTTMQILEGLLLIAKDNTLTLIGTDTDLTIISTMACI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + V++ L  DI+RKL+D    SF         +NI   +S+F +      EFP 
Sbjct: 61  VEEEGEVVVNSRLFGDIIRKLED----SFVDITLKDLNLNIVCKNSDFNINCQSSKEFPR 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   SF +    LK  + +T FA++ EE R    G+F    E+   +  VA DG R
Sbjct: 117 NLNFEDKGSFTMKEEDLKEAIRKTTFAVSIEETRKIFTGVFMDCKED---ISFVALDGFR 173

Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A   + I  +    PS  I+P   + E+ +IL S D  VK+++ E +I     +  +  
Sbjct: 174 MARERIAISTE----PSESIIPANHLNELQKILGSGD--VKITIGERKILFETNNTKIYS 227

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
            L  GE+ NY+++I  S+  E+++N    + +++R S+++   R   +KL+++ +++ ++
Sbjct: 228 TLYSGEYFNYKDLIRKSHTTEVKINREMFQTSIERASLLAKEERSNLIKLNIADNRVKIS 287

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             N ++G   E +    N   +DI FN KYLL+ I  +  DE+V
Sbjct: 288 -SNTEIGNVEEVLECEINGPGLDIAFNSKYLLDGIKIMDEDEIV 330


>gi|258506997|ref|YP_003169748.1| DNA polymerase III beta subunit [Lactobacillus rhamnosus GG]
 gi|257146924|emb|CAR85897.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus GG]
 gi|259648367|dbj|BAI40529.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           rhamnosus GG]
          Length = 379

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 85/342 (24%), Positives = 165/342 (48%), Gaps = 20/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A+
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F ++  
Sbjct: 61  DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  + + VL+ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + A       II+P K++ E+ R+L    + +++ ++E+++     
Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP---MDICFNYKYL 329
              +  +  ++PD+G   E ++  +N+     ++I FN  Y+
Sbjct: 296 GEQRATIYGNSPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 335


>gi|260101877|ref|ZP_05752114.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260084305|gb|EEW68425.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328468761|gb|EGF39732.1| DNA polymerase III subunit beta [Lactobacillus helveticus MTCC
           5463]
          Length = 376

 Score =  112 bits (281), Expect = 8e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 163/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   D  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T+  I   +S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQ--IVSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +F ++    + ++  T FA + ++ R  L G+ F  N  ++K  AVAT
Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VK+   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  + + L  A++R S+++   R   V L+L +   
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295

Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342
              +     GK+ E  NV     + N     + I FN  Y+ + +    +D VV
Sbjct: 296 TAKLS----GKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRASVTDSVV 345


>gi|161506636|ref|YP_001576584.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571]
 gi|160347625|gb|ABX26299.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571]
 gi|323465559|gb|ADX69246.1| DNA polymerase III Beta chain [Lactobacillus helveticus H10]
          Length = 376

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 95/354 (26%), Positives = 163/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   D  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +IV+KL  G   SF  +    T+  I   +S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQ--IVSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +F ++    + ++  T FA + ++ R  L G+ F  N  ++K  AVAT
Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VK+   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
              RL+DG +P+   +IP      +  + + L  A++R S+++   R   V L+L +   
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295

Query: 296 CMTVDNPDMGKAIESMNV-----YYN--ECPMDICFNYKYLLEIIDNISSDEVV 342
              +     GK+ E  NV     + N     + I FN  Y+ + +    +D VV
Sbjct: 296 TAKLS----GKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRASVTDSVV 345


>gi|112789950|gb|ABI21619.1| Smu19B [uncultured organism]
          Length = 357

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 92/344 (26%), Positives = 164/344 (47%), Gaps = 14/344 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D+ + +    + +  +  +PV   +LL+ + G L +  SG + E++     S
Sbjct: 1   MKFRVARDDLADAVAWVAKSLPSRPPVPVLGGILLEVDGGTLTV--SGFDYEVSTRAELS 58

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           VD    G + VS  LL +I R L     + F  +   G+ V+I  G + F L + P  ++
Sbjct: 59  VDAEDDGRVLVSGRLLSEITRALP-AKPVDFAVD---GSRVSIVGGSARFTLPTMPVDDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E     S  + S+ L   V ++  A   ++    L GI   I  + L L   ATD 
Sbjct: 115 PPLPEMP-AGSGTVESAALAEAVAQSVVAAGRDDTLPMLTGIRVEIEGDKLTLA--ATDR 171

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            RLAV E+        M  +++VP + + +  + L    +SV V+L +  + L       
Sbjct: 172 FRLAVRELGWTPDTPDMSTAVLVPARTLSDAAKTLGGA-ASVIVALGDGLLGLQAGGRRT 230

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +VRL+D EF  Y++++P  +   + V  + L +A+ RV++++  R   +++ ++   L +
Sbjct: 231 TVRLLDVEFVKYRSLLPSEHTTTVDVPVSELVEAIRRVALVTD-RGHHLRMQVTDGLLTL 289

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           T    D GKA E + V  +   + I FN  YL++ +  + S+ V
Sbjct: 290 TAGGDDEGKAEEELPVEADGAELLIAFNPGYLIDGLGVLHSERV 333


>gi|146344353|ref|YP_001202209.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25]
 gi|146188165|emb|CAM96496.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25]
          Length = 369

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 100/394 (25%), Positives = 184/394 (46%), Gaps = 34/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++ SD+   L    R+ +RK T  V  H L+  +   L + A   + +++  IPA 
Sbjct: 1   MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59

Query: 61  VDVCG----SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPE 115
           +        ++ V A     +V  L   A +S  F E +L     IS   S F L + P 
Sbjct: 60  LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEPKL----VISAARSRFTLATIPA 115

Query: 116 SEFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             FP  +   ++      +A S L   V +  F  A  ++R  LNGI F   +  + L A
Sbjct: 116 DHFPVMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTLAA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
              DG RL V EV +  +   M + I+P   + ++ + + +   SV+VS S S      E
Sbjct: 176 --ADGLRLGVTEVPVTGE--PMQNFILPSSCIEDVCQFVGT--GSVRVSTSGSMARFTRE 229

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKEL-RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
              +  +L++G+FP+Y+ ++  +   ++ R+       A+ RV ++S   +  V+L++S+
Sbjct: 230 GGVLHTKLVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSA 289

Query: 293 DKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + + + +V       A + +   YN  P++I FN +   EI+ ++ + E+   +V+F   
Sbjct: 290 ESISIQSVGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEI---DVIF--S 344

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + S   +R +D  S +         +VLMP+R+
Sbjct: 345 GAASGTLLRARDLPSHS---------FVLMPVRL 369


>gi|332980607|ref|YP_004462048.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON]
 gi|332698285|gb|AEE95226.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON]
          Length = 371

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 94/391 (24%), Positives = 192/391 (49%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT E+ D++  L  A + +  K  IP+  +++++  D    +K++  EI I   +  +
Sbjct: 1   MIITCEKDDLVNALSIAEKALPSKTIIPMLNNIIIETVDDATHLKSTDTEISIDTVLNGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ ++  L  DI R L    Q++   ++    E +I  G S   ++     +FP 
Sbjct: 61  IIDQGSVALNGRLFIDIARSLPK-EQVTIKVDDH--NEASIKCGLSEISIKGMGTVDFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                   SF ++S++ ++++ +T F++A  ++ R  L G       +++ L +V  DG+
Sbjct: 118 LPVISNGMSFNISSTIFRDMIRQTAFSIAPPDDNREVLTGELLKFENDEIMLVSV--DGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+++   +I     +    ++P KA+ E++RIL     ++ + + + R    I    M+ 
Sbjct: 176 RISIRYEEISEIPDRQFEAVIPGKALMELMRILPPTQENLNIKIDDKRAAFTINGTVMTA 235

Query: 240 RLIDGEFPNYQNV-IP--CSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKL 295
           +L++ +F NY+++ +P        + VN  +L  A +R  +++   +   +KLS+S   +
Sbjct: 236 QLLNSKFINYEDILLPELSETKTTITVNRADLLSAAERAMLVAKEGKSSLIKLSISEHGM 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSN 354
            +T  N D+GK  E + +  N   ++I FN +YL + +      +VVDDE V+ + +S  
Sbjct: 296 VLT-SNADIGKVHEDIPIDINGSAIEIAFNGRYLTDPL------KVVDDEQVLMKFNSDV 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   I   D  S           Y+++P+R+
Sbjct: 349 SPCIIEPVDGKS---------FLYLVLPVRM 370


>gi|52142810|ref|YP_084019.1| DNA polymerase III subunit beta [Bacillus cereus E33L]
 gi|51976279|gb|AAU17829.1| DNA polymerase III, beta subunit [Bacillus cereus E33L]
          Length = 376

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 168/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDKQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S R    V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASERANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  ++V   +  ++I F+ +++L+ +  I  + V
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345


>gi|325969851|ref|YP_004246042.1| DNA polymerase III subunit beta [Spirochaeta sp. Buddy]
 gi|324025089|gb|ADY11848.1| DNA polymerase III, beta subunit [Spirochaeta sp. Buddy]
          Length = 368

 Score =  112 bits (280), Expect = 9e-23,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 180/384 (46%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +  IL  + ++     ++N++ ++ +V L+  +  L I+A+  ++  +  I   
Sbjct: 1   MKFVCSKEAILTEIIYSMDFTSQRNSLSITSNVYLETYNDTLIIRATDQKLGFSTHIAVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TV    L +I+R L D   + F   + + T   +S  + +F L++    EFP 
Sbjct: 61  TLKEGKTTVFCEKLLNILRSLPD-TNVEFTVVDGMFTIKPVSQ-NIDFKLRTITPEEFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +       F +      ++  +T FA++ +E RY+L G++   N   + +  VATDG R
Sbjct: 119 LETAPEGRYFSVPQKAFSDMANQTMFAISEDETRYFLCGLYLERNASGMNM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++ E     ++     +I+  K   E L+ LS+ + ++++ +++  +   I   +    
Sbjct: 177 LSIVERTFEEELPMFTPVIIAPKFFTE-LKKLSTDEGTLELCITDQLLFAKIAQRTFYTT 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI G++PNY+ VIP S +    +   ++  A+ RVS++   + + + L +S   + +T D
Sbjct: 236 LIKGQYPNYRRVIPDSQNYSCTMRIQDMLDALKRVSLLVENKAKRIFLDISEAGVLLTSD 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G+A E +   Y      +  NY YLL  +  +  +            S N +   +
Sbjct: 296 ESEVGEAKEIIPCQYEGPDSKVSLNYTYLLNPLKAMEGEYF----------SINFTEPTK 345

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
                S++N+D     ++++MPM+
Sbjct: 346 AMTVKSESNRD----YYHIIMPMQ 365


>gi|282878678|ref|ZP_06287447.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310]
 gi|281299223|gb|EFA91623.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310]
          Length = 374

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/347 (26%), Positives = 165/347 (47%), Gaps = 12/347 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  S +   L    ++I  KN++P+    L    D  L I AS  E  +  ++   
Sbjct: 1   MRFTLSSSALNSRLQTLSKVINSKNSLPILDSFLFDIQDKQLNITASDSENVMRTSL--Q 58

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           +D C       V +  + D V++L +           L  ++   +G  NF  Q+   +E
Sbjct: 59  LDECDGESKFAVPSRTILDAVKELPEQPLTFEVDVTNLTIQIQYQNGVYNFTAQN--AAE 116

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P ++   +      + + +L + + R+ FA A +E+R  +NGI+F +  + L +  VA+
Sbjct: 117 YPESQAIPDGATVITMNAGILNDNINRSLFATAQDELRPVMNGIYFDLTSDSLAI--VAS 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGH+L V   +   +     S I+P+K    +  +L+  +    +        ++    S
Sbjct: 175 DGHKL-VRNKNFKLKSETPASFILPKKPAMLLRNVLTKDEGDAVIKFDTKNAEIHYAGGS 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +S RLI+G +PNY +VIP  N  +L V+   L  A+ R+   +S   Q V+L L + KL 
Sbjct: 234 LSCRLIEGRYPNYNSVIPQDNPNQLTVDRKGLLGALRRILPFASESSQLVRLHLETGKLE 293

Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ ++ D    A ES+   Y+   M+I F    L EI+ N+ S++V 
Sbjct: 294 LSSEDIDFATSAKESIVCDYSGQTMNIGFKGSSLTEILTNLESEDVT 340


>gi|24209792|gb|AAN39856.1| DnaN protein [Salmonella enterica subsp. enterica serovar Agona]
 gi|24209794|gb|AAN39857.1| DnaN protein [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|24209810|gb|AAN39865.1| DnaN protein [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 167

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 59/157 (37%), Positives = 93/157 (59%), Gaps = 6/157 (3%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP+  + 
Sbjct: 16  GATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDW 72

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV 
Sbjct: 73  QSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVC 130

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV 221
            + + A +    S+IVPRK V E++R+L   ++ ++V
Sbjct: 131 SMPLEASLPSH-SVIVPRKGVIELMRMLDGGENPLRV 166


>gi|294673576|ref|YP_003574192.1| DNA polymerase III subunit beta [Prevotella ruminicola 23]
 gi|294473619|gb|ADE83008.1| DNA polymerase III, beta subunit [Prevotella ruminicola 23]
          Length = 374

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/351 (26%), Positives = 163/351 (46%), Gaps = 20/351 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE------IEIT 54
           M+ T+  + +   L    R+I  KN +P+    L +  + +L + AS  E      +E+T
Sbjct: 1   MRFTLSSTALSSKLVALSRVINSKNALPILGDFLFEIENNVLHLTASDSENVMKTQLELT 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +     D      +  H L + V+   +   I+F  + E    V I++ +  F L    
Sbjct: 61  ES-----DGNFRFAIGNHDLLEAVKGFSE-QPITFDVDLEQNL-VKITYQNGLFSLPVDN 113

Query: 115 ESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             EFP  +   ++  S  L +++L   + R+ FA A +E+R  +NGI+F +  +   L  
Sbjct: 114 ADEFPVAQPVSDFAKSIVLPNAILAENINRSIFATAQDELRPVMNGIYFDLTPD--HLAV 171

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VA+DGH+L   ++  +   ++ PS  I+P+K    +  +L      V +   E    +N 
Sbjct: 172 VASDGHKLVRNKIFTIK--SEEPSAFILPKKPANLLKNLLGKDGGDVTIRFDERNAEVNY 229

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
               +  RLI+G +PNY +VIP +N  E+R++  +L  A+ RV   ++     V+  +  
Sbjct: 230 GDGVLLCRLIEGRYPNYNSVIPQNNPNEVRLDRLSLLAALRRVQPFANDSSNLVRFHVEG 289

Query: 293 DKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +  ++ D  K A E M   YN  PM I F     +EI+ NI   +V+
Sbjct: 290 STFQLDAEDYDFSKTATERMTCEYNGTPMSIGFKGNAFIEILGNIECSDVI 340


>gi|312874976|ref|ZP_07734995.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089721|gb|EFQ48146.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 376

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP +
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  EDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|257789781|ref|YP_003180387.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243]
 gi|257473678|gb|ACV53998.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243]
          Length = 366

 Score =  112 bits (280), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 187/389 (48%), Gaps = 28/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +S++   L    + I  ++T+P+   + L A+D  L ++A+  E+ I  ++ A 
Sbjct: 1   MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V   L  +IV+ L D A +    E++      I+   ++F +++    +FP 
Sbjct: 61  IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAV---ITCDTASFSIKTLDAEDFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      +  +   ++V+R    ++ +E R  L G+   I  ED  L  VATD +R
Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    A+    ++    + EI  +  S+D  +K++L+E++I +         R
Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSDKLC 296
            ++G FPNY+ ++P S    + ++  +L   V R S++    S VR     ++++S  + 
Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLLGQTSSPVRF---AINMASQTVQ 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++    D+G A E+++       ++I FNY Y+L+ + ++S+D V  +            
Sbjct: 291 LSAVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVSTDNVFLE------------ 338

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++   K      D   N  Y++MP+RI
Sbjct: 339 --VQSSMKPGIFKADEGENFLYLVMPVRI 365


>gi|281419998|ref|ZP_06250997.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205]
 gi|281405798|gb|EFB36478.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205]
          Length = 360

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 92/333 (27%), Positives = 164/333 (49%), Gaps = 17/333 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-VDVCGSITVSAHLLYD 76
            ++I  KN++P+    L Q  +G + I AS  +  I   +  +  D  G   V   ++ D
Sbjct: 3   AKVIGSKNSLPILDCFLFQVANGEMSITASDSDNVIKSTLALTDHDGEGEFCVPNRVILD 62

Query: 77  IVRKLQDGAQISFFKENELGTEVNI----SHGDSNFYLQSFPESEFPSTKE-EEYVYSFE 131
            +++L +  Q   F  +  G  V I     +G  NF  QS    E+P T+   +   +  
Sbjct: 63  ALKELPE--QPLHFDVDAAGEAVAIKIVYQNGLYNFTGQS--AEEYPRTQSMNDACTTVS 118

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           L + +L N + R+ FA A++E+R  +NGI+F +  + L +  VA+DGH+L  ++   +  
Sbjct: 119 LPTEMLINNISRSLFATASDELRPVMNGIYFDLTADALAI--VASDGHKLVRSKNFTIK- 175

Query: 192 IAKMPSII-VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
            ++ PS   +P+K    +  ILS       +   +    +      M  RLIDG +PNY 
Sbjct: 176 -SESPSAFNLPKKPASLLKNILSKDGDDAIIKFDDRSAEIQFTDGVMRCRLIDGRYPNYN 234

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIE 309
           +VIP +N  E+ V+   L+ A+ RV   +S   Q ++  + S +  ++ ++ D    A E
Sbjct: 235 SVIP-NNPNEVTVDRRGLQSALRRVLPFASESSQLIRFHIESGRFEVSSEDIDFSTSAKE 293

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++  YN  P+ I F    L+EI+ N++SD ++
Sbjct: 294 QLSCEYNGSPISIGFKGSSLMEILSNLTSDNII 326


>gi|226303491|ref|YP_002763449.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4]
 gi|226182606|dbj|BAH30710.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4]
          Length = 394

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 181/402 (45%), Gaps = 32/402 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R +  + +    R +  +  +PV   VLL A +  L +  SG + E++  +  S
Sbjct: 6   LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTV--SGFDYEVSAQVRVS 63

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV   G   VS  LL DI + L +   +    E   GT V IS G + F L + P  ++
Sbjct: 64  ADVTTAGQALVSGRLLADITKSLPN-KPVDVTLE---GTRVLISCGSAKFSLPTMPVEDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P         S  +   +    + +   A   ++    L GI   I +  + L   ATD 
Sbjct: 120 PQLPTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVLA--ATDR 176

Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
            RLAV E++   A      ++++P K + E  + L+   +S V+++L       N   L 
Sbjct: 177 FRLAVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLG 236

Query: 237 M-------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +       + RL+D EFP ++ ++P  +     V  T L +A+ RV++++  R   V++ 
Sbjct: 237 IVNDGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVAE-RGAQVRMQ 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S+D L ++    D G+A E++N  +    + I FN  YL++ ++++ S     + V+F 
Sbjct: 296 FSADGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFG 350

Query: 350 LDSSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385
             + +    +R   +      +S N         Y+LMP+R+
Sbjct: 351 FTTPSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 392


>gi|229491191|ref|ZP_04385019.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121]
 gi|229321929|gb|EEN87722.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121]
          Length = 403

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 100/402 (24%), Positives = 181/402 (45%), Gaps = 32/402 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R +  + +    R +  +  +PV   VLL A +  L +  SG + E++  +  S
Sbjct: 15  LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTV--SGFDYEVSAQVRVS 72

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV   G   VS  LL DI + L +   +    E   GT V IS G + F L + P  ++
Sbjct: 73  ADVTTAGQALVSGRLLADITKSLPN-KPVDVTLE---GTRVLISCGSAKFSLPTMPVEDY 128

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P         S  +   +    + +   A   ++    L GI   I +  + L   ATD 
Sbjct: 129 PQLPTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVLA--ATDR 185

Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
            RLAV E++   A      ++++P K + E  + L+   +S V+++L       N   L 
Sbjct: 186 FRLAVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLG 245

Query: 237 M-------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +       + RL+D EFP ++ ++P  +     V  T L +A+ RV++++  R   V++ 
Sbjct: 246 IVNDGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVAE-RGAQVRMQ 304

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S+D L ++    D G+A E++N  +    + I FN  YL++ ++++ S     + V+F 
Sbjct: 305 FSADGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFG 359

Query: 350 LDSSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385
             + +    +R   +      +S N         Y+LMP+R+
Sbjct: 360 FTTPSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 401


>gi|145221420|ref|YP_001132098.1| DNA polymerase III subunit beta [Mycobacterium gilvum PYR-GCK]
 gi|315441698|ref|YP_004074577.1| DNA polymerase III subunit beta [Mycobacterium sp. Spyr1]
 gi|145213906|gb|ABP43310.1| DNA polymerase III, beta subunit [Mycobacterium gilvum PYR-GCK]
 gi|315260001|gb|ADT96742.1| DNA polymerase III, beta subunit [Mycobacterium sp. Spyr1]
          Length = 398

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 98/402 (24%), Positives = 179/402 (44%), Gaps = 34/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R D  + +    R +  + T+PV   VLL  +D  L +     E+     IPA 
Sbjct: 12  LKFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIPAE 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   GS+ VS  LL DIVR L     +    E   GT V+++ G + F L +    ++  
Sbjct: 72  IASPGSVLVSGRLLSDIVRSLP-AKPVDVSVE---GTRVSLTCGSARFSLPTMAVEDYPT 127

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+  +E  V S +L        + +   A   ++    L GI   I+ E  K+   ATD
Sbjct: 128 LPTLPDETGVVSADL----FAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATD 181

Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIH 229
             RLAV E+           +++VP K + E  +   +  + V ++L        E  + 
Sbjct: 182 RFRLAVRELTWSAGAAGVEAAVLVPAKTLAEAAKA-GTDGTEVHLALGQGPTVGKEGLLG 240

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  +    + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++ 
Sbjct: 241 IRSKGKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVAD-RGAQVRME 299

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + D L ++    D+G+A E + V ++  P+ I FN  YL + + ++ +     + V F 
Sbjct: 300 FADDVLRLSAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHA-----ERVTFG 354

Query: 350 LDSSNSSVFIR--GKDKDSKNNKDN----KVNAFYVLMPMRI 385
             + +    +R  G D  S          + +  Y+LMP+R+
Sbjct: 355 FTTPSRPAVLRPAGDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396


>gi|325912232|ref|ZP_08174629.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D]
 gi|325475891|gb|EGC79060.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D]
          Length = 376

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 181/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP +
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  EDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|170077879|ref|YP_001734517.1| DNA polymerase III subunit beta [Synechococcus sp. PCC 7002]
 gi|169885548|gb|ACA99261.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7002]
          Length = 394

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 96/408 (23%), Positives = 190/408 (46%), Gaps = 39/408 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK    +SD+   L    R +  + T P+  +VLL A  N   +++ A    + I  + P
Sbjct: 1   MKFVCSQSDLNSQLSLVGRAVPSRPTHPILGNVLLTADANRHQIQLTAFDLSLGIRTSFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115
           A V   G++T+ A LL DIV +L +G        + L     +  ++     F ++    
Sbjct: 61  AQVIEGGTLTLPAKLLNDIVSRLPEGEVTLSCPSDTLMKGDAQATLTAATGRFQIRGMGA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     +      L +  L   +    FA + +E +  L G+    +++ L+  A  
Sbjct: 121 EEFPELPTIQDGKKLMLPAIALSEGLGGVLFAASPDETKQVLTGVHLTHHQDCLEFAA-- 178

Query: 176 TDGHRLAVAEV-DIVA------QIAKMPS-------IIVPRKAVGEILRILSSKDSS--V 219
           TDGHRLA+ E  D V+      +  K+P+       + +P +A+ E+ R+L++ + +  +
Sbjct: 179 TDGHRLALVETSDQVSPEPESSETGKLPTSTLEDFALTIPARALRELERMLTTANEADLI 238

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            + L +S++   +    ++ R +DG +P Y  +IP    +++ +    L  +++RV++++
Sbjct: 239 ALHLDDSQVIFEVNHQHLTSRKLDGAYPAYHQLIPRQFSRDVTLERRALISSIERVAVLA 298

Query: 280 SVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
             +   VK  L+S   KL + V+  D+G   E++    +   ++I FN +YL++ +  + 
Sbjct: 299 DQKNNIVKFRLNSAEQKLHLAVEAQDVGSGEEALPAQVSGTDLEIAFNVRYLIDGLKALP 358

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S     +E+  +L+ +N  V                V   Y++MP++I
Sbjct: 359 S-----NEIKMQLNENNQPVIF---------TPLGAVQMTYLIMPVQI 392


>gi|312137516|ref|YP_004004852.1| DNA polymerase III beta subunit [Rhodococcus equi 103S]
 gi|311886855|emb|CBH46163.1| DNA polymerase III beta subunit [Rhodococcus equi 103S]
          Length = 394

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 178/403 (44%), Gaps = 34/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D  + +    R +  +  +PV   VLL A++  L +     E+     + A 
Sbjct: 6   MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V   G + VS  LL DI R L +       K  ++   GT V I+ G + F L + P  +
Sbjct: 66  VTTTGQVLVSGKLLADITRALPN-------KPVDVTVDGTRVLIACGSAKFSLPTMPVED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P         +  L   +    V +   A   ++    L GI   I   D+ L   ATD
Sbjct: 119 YPQLPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVLA--ATD 175

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKD-SSVKVSL-------SESRI 228
             RLAV +++ +     +  +++VP + + E  + L     + V+++L       +E  +
Sbjct: 176 RFRLAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLAPVELALGAGASVGTEGML 235

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            +  +    + RL+D EFP ++ ++P  +     V    L  A+ RV++++  R   V+L
Sbjct: 236 GIVADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVAE-RGAQVRL 294

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             +S+ L ++    D G+A E++   +   P+ I FN  YL++ ++++ S     + V F
Sbjct: 295 EFNSEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTF 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNA------FYVLMPMRI 385
              + +    +R   ++     ++   A       Y+LMP+R+
Sbjct: 350 GFTTPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392


>gi|227500985|ref|ZP_03931034.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
           35098]
 gi|227216758|gb|EEI82156.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
           35098]
          Length = 370

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 95/338 (28%), Positives = 171/338 (50%), Gaps = 21/338 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + D++  +  A + + +   I +   +  +  D  L +KA   EI I   + A 
Sbjct: 1   MKFRISQQDLMSAINIAMKAVSKSTNIQIHELIYFECFDNSLFLKAFDGEIAIKTKVDAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP-----E 115
           VD  G + V A L+ +IVRKL +   I    EN+ G ++NI    SNF L +F      E
Sbjct: 61  VDEKGEMAVKASLIANIVRKLPNDIVIV---ENKDG-KINIKCSSSNFNLLAFDYFEKNE 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              P T       + E+ + VLK  + +T FA + +E +  L GI F    +D  L  VA
Sbjct: 117 LSIPDT------LAIEIDNDVLKRSISQTEFATSLDETKLALTGILFEF--KDGFLNMVA 168

Query: 176 TDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            DG+R+++ +V +        S  I+P++++ E  RI+S  D+  K+  +E+ +    E+
Sbjct: 169 LDGYRVSLKKVKLEYPTDYEDSEYIIPKRSLLEWSRIVSD-DTKTKLYKNENDLIFVSEN 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
            +M  ++ID  F +Y+N+I   ++  + V+   L  ++DR  +++   R   +K+ + SD
Sbjct: 228 TTMQCKVIDKNFIDYRNIINDISETSIIVDKRELINSLDRAQVLADPGRANLIKIEI-SD 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           KL +   N ++G   E+++V      ++I FN +Y+ E
Sbjct: 287 KLMLIKSNSEIGDVREAIDVDQQGPDLEIAFNARYMQE 324


>gi|194097591|ref|YP_002000627.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
 gi|193932881|gb|ACF28705.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
          Length = 207

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 68/203 (33%), Positives = 108/203 (53%), Gaps = 9/203 (4%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               IT +A    DI+R L  GA +S  + +N L     +  G S F LQ+ P ++FP  
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDDNRL----TLKAGKSRFALQTLPAADFPMM 119

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E+   +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHR
Sbjct: 120 NVGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRK 203
           L  A   I A + +   +I+PRK
Sbjct: 178 LDYAACAIDADLPR-AEVILPRK 199


>gi|78776203|ref|YP_392518.1| DNA polymerase III subunit beta [Sulfurimonas denitrificans DSM
           1251]
 gi|78496743|gb|ABB43283.1| DNA polymerase III, beta subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 355

 Score =  112 bits (279), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 97/351 (27%), Positives = 177/351 (50%), Gaps = 35/351 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAI 57
           MKIT+++S I  +L H+   +E+K+T  ++ HV + A++  L +KA+  EI +   T  +
Sbjct: 1   MKITIQKSIIENILIHSQPFLEKKDTSQITSHVFIDASNNKLTLKATDYEIGLIVSTDKL 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN-----ISHGDSNFYLQS 112
             S D  G++T +   L DIVR L+DG         E+  EV      IS   S F L +
Sbjct: 61  NISQD--GNVTANGKKLLDIVRILKDG---------EINLEVKSDILYISQSHSKFKLPT 109

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  +EFP     E      + S  L + +++   ++     ++ LNG    I + ++   
Sbjct: 110 FSYNEFPVFPMSEGKSRILIDSHSLIDSLKKITPSIDINNPKFELNGALIDIKQNNINFA 169

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             +TD  RLAV  V+I  Q +   SIIVP+KA+ EI ++      ++++   E+ + ++ 
Sbjct: 170 --STDTRRLAV--VNIENQSSSELSIIVPKKAIVEIQKLFF---DNIELYYDENYLIIHS 222

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +  +   +LI+G+FP Y  +IP      L +    + +A+ +++ +S+     VK++  +
Sbjct: 223 KEYTFFTKLINGKFPEYSRIIPKEIKNTLILQKAKMIEAIKQITTIST----DVKITFLN 278

Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           D +    ++ DN +    I S+  +    P  I  N +YLL+ ++ I+S E
Sbjct: 279 DTVIFESLSDDNIEAKTEINSITGF--TTPFTIAVNSRYLLDFLNTINSSE 327


>gi|33239453|ref|NP_874395.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33236978|gb|AAP99047.1| DNA polymerase III beta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 385

 Score =  111 bits (278), Expect = 1e-22,   Method: Compositional matrix adjust.
 Identities = 93/400 (23%), Positives = 187/400 (46%), Gaps = 32/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   + ++   L    R +  + + PV  +VLL A+ G  ++  +G ++   I  ++ 
Sbjct: 1   MKLVCSQIELNTALQLVSRAVATRPSHPVLANVLLTADAGTGKLSLTGFDLNLGIQTSLS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS++  G+ITV + L  +I+ KL   + I+   ++    +VN+     N+ +++    +F
Sbjct: 61  ASIESSGAITVPSKLFGEIISKLSSESSITLSTDDS-SEQVNLKSKSGNYQVRAMSADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E     ++ ++     ++ T FA +T+E +  L G+        LK  + ATDG
Sbjct: 120 PDLPMVENGAFLKVNANSFAVSLKSTLFASSTDEAKQILTGVNLCFEGNSLK--SAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSI---------IVPRKAVGEILRILSS--KDSSVKVSLSESR 227
           HRLAV ++  V      P I          +P +++ E+ R LS    DS +     + +
Sbjct: 178 HRLAVLDLQNVIASETNPEINNLSEKLEVTLPSRSLRELERFLSGCKSDSEISCFYDQGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
                    ++ R +DG +PNY  +IP     +L ++      A++R+++++      VK
Sbjct: 238 FVFISSGQIITTRTLDGNYPNYNQLIPDQFSNQLVLDKKYFIAALERIAVLAEQHNNVVK 297

Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +S + +   L ++ D  D+G   ES+ + Y+   + I FN +YLLE +  I +     + 
Sbjct: 298 ISTNKELQILNISADAQDLGSGSESIPIKYDSEDIQIAFNSRYLLEGLKIIET-----NT 352

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ + ++  +       D         + N  Y++MP++I
Sbjct: 353 ILLKFNAPTTPAIFTPND---------ETNFVYLVMPVQI 383


>gi|329769244|ref|ZP_08260662.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839335|gb|EGF88916.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 379

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 171/354 (48%), Gaps = 18/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+E+SD LE L H  R+I   +   +   + L+ +   L +KAS   + +   I A 
Sbjct: 1   MKFTIEKSDFLEGLNHVARVIAPNSLFEILKGIKLELSSNNLVLKASDSLVSVEFIIDAY 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  G + + +    +I+RK    A  +  +     + + I  G S F ++ 
Sbjct: 61  KDDKEIITIEEEGQVVLPSRNFIEIIRK----APTNLIEFESTDSFIKIHSGKSEFNIKG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +   E+P         S +L ++V  +++  T F  A  + R  L G+ F +  +   L 
Sbjct: 117 YDAMEYPEFPVISRENSLKLEATVFNDIIRETVFCTAPNDQRPILEGVNFSLKNK--ILT 174

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A ATD +RL+  +V +  + A K  ++I+PRKA+    R++ +    V++    +RI L 
Sbjct: 175 ATATDSYRLSRRQVVLNDEDAEKEFNLIIPRKALTYFQRMIETGGDEVEIFYENNRIVLY 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
            +++  +V LI G +PN + +IP   +     N      AVDR+S+MS   +   +KL +
Sbjct: 235 YQNVVYTVLLISGNYPNTEKLIPTMFECSFTANSREFFNAVDRISLMSREDKDDIIKLVV 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +   L ++    D+G A+E + V     +   +I  + KYL + +  I+S+E+V
Sbjct: 295 TEGNLEISSQAKDLGSAVEELQVNSKLEDDSFEISVSGKYLKDAVSAIASEEIV 348


>gi|300934348|ref|ZP_07149604.1| DNA polymerase III subunit beta [Corynebacterium resistens DSM
           45100]
          Length = 394

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 100/399 (25%), Positives = 180/399 (45%), Gaps = 26/399 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ TV + D    LG   R +  K T PV   VL++AND  L +     E+     I A 
Sbjct: 6   VRFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFDREVSTQITINAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G I ++  L+ DIV  L D       KE    T+V ++ G S F L +    ++P 
Sbjct: 66  VDEPGRILIAGKLVNDIVGSLPDKPITLELKE----TKVLVTSGSSRFELPAMTIEDYPE 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 V    +   +    V +   A   ++    L G+   ++ E++ + A  TD  R
Sbjct: 122 LPSLPGVTG-TIDPHLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTMAA--TDRFR 178

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLS-------ESRIHLN 231
           LAV  +    AQ     ++++P + + +  R L ++ S  +++++        +  + + 
Sbjct: 179 LAVRTLQWNPAQADGQATLLIPARTLSDTARSLDAQSSDPIEIAVGSGDSIGQDGLLGIA 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +S   + RL+D EFP ++ ++P S+     V    L+ A+ RVS+++  R   +++   
Sbjct: 239 TDSRHTTTRLLDAEFPKFRPLLPTSHTAVASVEIAPLQDAIRRVSLVAD-RNSQIRMQFE 297

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L ++    ++G A E +   +   P++I FN  YL E +  I +  VV     F L 
Sbjct: 298 EGSLTLSAGGSEVGSATEQLQCAFAGEPLEIAFNPGYLKEGLGAIHTPRVV---FGFTL- 353

Query: 352 SSNSSVFIRG----KDKDSKNNKDNKVNAF-YVLMPMRI 385
           +S  ++ I       + D++ N       F Y+LMP+RI
Sbjct: 354 ASRPAIMIPDAGNLPEADAEGNFATPETDFTYLLMPVRI 392


>gi|325279749|ref|YP_004252291.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM
           20712]
 gi|324311558|gb|ADY32111.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 167/355 (47%), Gaps = 27/355 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V  + +L  L    ++I  K   P+  ++LL A +G+L   AS  E  +   I   
Sbjct: 1   MKFVVSSNTLLTRLQAVSKVIGGKPVQPILDNILLVATEGVLYATASDKETTMEARIELE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S++  G IT+ A +L DI+++         F E  L  E+N    +     +   E   P
Sbjct: 61  SLEEEGKITIPAKILLDILKE---------FPEQPLTFEINTETNEVKIISEK-GEFSVP 110

Query: 120 STKEEEYVYSFELASS----------VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
               E+Y     L  S          +L+ +V +T FA A +++R  +N I   +NE++ 
Sbjct: 111 GESAEDYPIQAALNDSSNDLTSKCGLILEGIV-KTIFATANDDLRPVMNCILIEMNEDNF 169

Query: 170 KLCAVATDGHRLA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
               VA+D H+L      D  ++  +  S+I+P+K    +  IL   DS +K+S ++   
Sbjct: 170 TF--VASDAHKLVRYKRFDAKSENGQF-SLILPKKPALMLKNILPKDDSELKISFNDKMA 226

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   M+  L++G FPNY +VIP +N K++ +    L  ++ RVS+M++     VK 
Sbjct: 227 CFVFGDYKMTSTLVEGRFPNYNSVIPQNNPKKIIIEKKELYNSLRRVSVMANQASNLVKF 286

Query: 289 SLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++  K+ ++  + D      E++   Y    + I F   ++LEI+ NI S+ VV
Sbjct: 287 DVAEGKIVISAQDMDYSMSGHETLTCQYEGENIAIGFKSPFVLEILSNIESENVV 341


>gi|312871279|ref|ZP_07731377.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093293|gb|EFQ51639.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 376

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/375 (24%), Positives = 180/375 (48%), Gaps = 18/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP +
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     GSI + A    +I++KL  G   SF  ++   T+  I   +S+F +      
Sbjct: 61  EDLHIESTGSIVLPARFFSEIIKKLP-GKDFSFEVKDSFQTK--IMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N +++   A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKEIN--AIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +      A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKFATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK+ L+ +  
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +  +S    + D +V +   
Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS----ITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSK 367
                 +  KD D K
Sbjct: 351 PLRPFVVVPKDSDEK 365


>gi|195977158|ref|YP_002122402.1| DNA polymerase III subunit beta [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973863|gb|ACG61389.1| DNA polymerase III beta subunit [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 378

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 175/352 (49%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S
Sbjct: 2   IQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A    +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSTGAVLLEASFFINIISSLPD---VSLEFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
              S++P  +E        L + +LK+++  T FA + +E R  L G+   +++ +D K 
Sbjct: 118 KDVSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S++   
Sbjct: 177 -AVATDSHRMSQRLITLEKTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++    + E   N  +LR A++R  ++S + +   VKL +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
            ++++   V++P++GK  E ++V       + I FN  YL+E +  I S+ V
Sbjct: 295 EANRISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKSETV 346


>gi|194467404|ref|ZP_03073391.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23]
 gi|194454440|gb|EDX43337.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23]
          Length = 380

 Score =  111 bits (278), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 168/342 (49%), Gaps = 19/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M  T+ RS  +  L +  R I  K TIP+   + +  N+  + +  S  +I I   I A 
Sbjct: 1   MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  G+I + A    DIV+KL D  +++   E   G + +I+ G + F +   
Sbjct: 61  DADNDLTIEDTGAIVLPARFFSDIVKKLPD-KKVTI--EVTSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   S  L + +LK ++ +T  A++ +E R  L G+  H+  +D  L A
Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGV--HMTLKDGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRLA  +V ++  I       +I+P K++ E+  ++S     V++ ++E+++   
Sbjct: 176 VATDSHRLAQRKV-VLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFI 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
             +     RL++G +P    +IP + D  + +       +++R S++S   R   VKLSL
Sbjct: 235 FGNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSL 294

Query: 291 --SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYL 329
             S + + ++ D+PD+G   E  +    +   ++I FN  Y+
Sbjct: 295 KPSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYM 336


>gi|312142410|ref|YP_003993856.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903061|gb|ADQ13502.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus']
          Length = 371

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 80/344 (23%), Positives = 177/344 (51%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++E+ D+ + L    R + +  T+P+   + L+    +L +KA+  E+ I   +   
Sbjct: 1   MKFSIEQKDLYKALNIVRRAVAKNKTLPILTGIYLKVEKNILSLKATDLELGIKYNVNVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +  GS+ + A    +I+R+L  +  +I     NE   ++ I+  +S F +  F   EFP
Sbjct: 61  SEEEGSVVLPAMQFINIIRELPSEKIEIEL---NEDKWQLQINCLNSLFKINGFDPDEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E E    F L ++  K+++E+   + + +E +  L G  F +  E++++  V+T+ +
Sbjct: 118 SLPEVEASAEFNLPAAKFKSMLEKVKISTSKDETQPALTGALFVVKAEEVRM--VSTNTY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  +  +   + ++  +I+P   + E+  +L   + S+ + +  +        + +  
Sbjct: 176 RLSYVDSPLKTNLDQIIEVILPGSTLDELNNLLED-EGSIDIVVDNNYARFEFAGIELIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ VIP   + + + + + L  AV R S+++  +  A  +S+S+D+  M +
Sbjct: 235 RLIEGKFPNYELVIPDEFNSKFKADLSKLHGAVKRASLIA--KEDANIISISADEGIMEI 292

Query: 300 DNPD--MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ +   G A E +++  +     I  +  YL++++  + S+E+
Sbjct: 293 NSTEGSAGYAHEELSIELSGPDQKINIDAGYLIDVLKVLDSEEI 336


>gi|312977116|ref|ZP_07788865.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05]
 gi|310896444|gb|EFQ45509.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05]
          Length = 369

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 90/345 (26%), Positives = 160/345 (46%), Gaps = 21/345 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV----CG 65
           ++E L +  R I  + TIP+   + L   +  L +  S  +I I   IP + D+     G
Sbjct: 3   LIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVNDDLNVESTG 62

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125
           SI + A    +IV+KL  G   SF  +    T++ IS  +S F +     + +P   E  
Sbjct: 63  SIVLPARFFSEIVKKLP-GKDFSFEVKESFQTQI-ISE-NSEFTINGLDANNYPRLPEIP 119

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              SF ++    + ++  T FA + ++ R  L G+ F  + + +K  AVATD HRL+   
Sbjct: 120 DAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPDKIK--AVATDSHRLSQRT 177

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS   RL+DG 
Sbjct: 178 IALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLSFYSRLLDGN 237

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTVDNPDM 304
           +P+   +IP      +  + + L  A++R S+++   R   V L+L  +     +     
Sbjct: 238 YPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQSAKLS---- 293

Query: 305 GKAIESMNVYYNEC-------PMDICFNYKYLLEIIDNISSDEVV 342
           GK+ E  NV  +          ++I FN  Y+ + +    +D V+
Sbjct: 294 GKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRASVTDSVI 338


>gi|312865826|ref|ZP_07726048.1| DNA polymerase III, beta subunit [Streptococcus downei F0415]
 gi|311098701|gb|EFQ56923.1| DNA polymerase III, beta subunit [Streptococcus downei F0415]
          Length = 378

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 174/352 (49%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  ++ L    R I  KN IP+   + +  +   + +  S  +I I  +I  S
Sbjct: 2   INFSINKAFFIQALNTTKRAISSKNAIPILSSLKIDVHSTGITLTGSNGQISIENSIATS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A+   +IV  L D   +S  FKE E  ++V ++ G S   L+ 
Sbjct: 62  DENAGLLITETGSILLEANFFINIVSSLPD---VSLDFKEIE-HSQVLLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-L 171
               ++P  +E          + VLK L+  T FA +T+E R  L GI  H+   D K  
Sbjct: 118 KDVEQYPRLQEVATSNPLIFDTKVLKTLIAETAFAASTQESRPILTGI--HLVLTDNKNF 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ I+        +++P +++ E + + +    +V+V LS S+I   
Sbjct: 176 KAVATDSHRMSQRKL-ILENSGDNFDVVLPSRSLREFVAVFTDDIETVEVFLSGSQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            ES+S   R+++G +P+   ++    + E+  +  NLR A++R  ++S + +   VKL +
Sbjct: 235 SESISFYARMLEGAYPDTDRLLVSDFETEILFDTNNLRSAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
              K+   V++P++GK  E ++    +   + I FN  YL+E +  + S+ V
Sbjct: 295 VDGKVSAHVNSPEVGKVNEEIDTLEIDGSDLTISFNPTYLIEALKALKSETV 346


>gi|225181146|ref|ZP_03734592.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168115|gb|EEG76920.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 367

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 189/389 (48%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TV ++ + E L    +    K+T+PV   +L Q++   + + A+  E+ I  + P  
Sbjct: 1   MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGIRTSFPVP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
               G + + A  + +I+RKL  D   ++  +EN L     I  G S F L      E+P
Sbjct: 61  DQEKGEVVLPAKAV-EIIRKLPGDTVSLTVNEENFL---TEIKSGQSEFQLYGLSTEEYP 116

Query: 120 STKE---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +  +   +   Y+ E+ +   +  + +T FA + +E +    GI F + +  L L +  +
Sbjct: 117 AFADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLSS--S 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  RLA     +  Q A     +VP K + E++RIL++ + SV+++++++++ +  +++ 
Sbjct: 175 DTFRLATTSCRVQNQGADG-VFLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIK 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +S RL+D  FPN   VIP        V+  +   AV+R S++S      V+LS+  + L 
Sbjct: 234 LSSRLLDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLV 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   +   GK  E + V  +   ++I  N +++L+++          D+ +  L ++N  
Sbjct: 294 IRASS-KFGKTQEHVPVELSGEGLEISLNSRFILDMLKVHEG-----DQCILELTNANKP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +R    DS   +       Y+++P++I
Sbjct: 348 CILR----DSLYQE-----YLYLVLPIKI 367


>gi|312130942|ref|YP_003998282.1| DNA polymerase iii, beta subunit [Leadbetterella byssophila DSM
           17132]
 gi|311907488|gb|ADQ17929.1| DNA polymerase III, beta subunit [Leadbetterella byssophila DSM
           17132]
          Length = 374

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/343 (25%), Positives = 164/343 (47%), Gaps = 6/343 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  +++L+ L +   +I     +P+  + L + +   L + AS  +  +   +  +
Sbjct: 1   MKFIVSSTELLKNLSYISGVIAPNPIVPILENFLFELDQNKLVVTASDMQTVMVAELDVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                SI + A LL D ++ L +         +  G E+  S G   F +      +FP 
Sbjct: 61  SSDVASIAIPARLLMDTLKSLPEQPITVNLNTDTFGVEIVTSTG--RFKITGENPLDFPR 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    ++ EL S VL   +  T FA +T+++R  + G+F  I  +      VATDGHR
Sbjct: 119 PPQVNKNFNIELNSDVLAAAINNTIFATSTDDLRPAMTGVFMDIQSDHTTF--VATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     + + Q +    +I+PRKA+  +   L S    V    S S    +  ++ +  R
Sbjct: 177 LIRYRRNDI-QSSTDNRLILPRKALNLLKSSLPSDVVPVVTEFSSSNAFFSFGNIKLICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y NVIP +N  +L V  +     + R+SI S+     ++L +  ++L ++ +
Sbjct: 236 LIDERYPDYDNVIPKANPYKLIVERSTFLATLKRISIFSNKTTHQIRLKMEPNELTISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + D   +A+E +   ++   ++I FN K+L E++ N+SS  V+
Sbjct: 296 DLDYSNEAVEKIACEFDGELLEIGFNAKFLSEMLSNLSSSTVM 338


>gi|87123348|ref|ZP_01079199.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917]
 gi|86169068|gb|EAQ70324.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917]
          Length = 390

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 97/404 (24%), Positives = 194/404 (48%), Gaps = 35/404 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++P
Sbjct: 1   MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G++T+ A LL +IV +L   + ++    ++ G +V ++     + ++  P  EF
Sbjct: 61  ASVESSGAVTLPARLLGEIVSRLSSESPVTL-ASDDAGEQVELTSLSGCYQMRGMPADEF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L ++ L   +  T FA + +E +  L G+  H+      L A +TDG
Sbjct: 120 PELPLVENGTALKLEAAALARALRATLFASSADEAKQLLTGV--HLRFSGSHLEAASTDG 177

Query: 179 HRLAV-AEVDIVAQIAKMP------------SIIVPRKAVGEILRILSSKDSSVKVSLSE 225
           HRLAV A  D + +   +             S+ +P +++ E+ R+++S      V+L  
Sbjct: 178 HRLAVLAVTDALREAPTLEGGEANDGEAADLSVTLPARSLREVERLVTSWKGDDPVTLFY 237

Query: 226 SRIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            R  + + +    V  R ++G +PNY+ +IP S  +   ++      A++RV++++    
Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDSFSRVFELDRRGFVAALERVAVLADQHN 297

Query: 284 QAVKLS--LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             V++S    S  + ++ D  D+G   ES+    +  P+ I FN +Y+L+ +  + +   
Sbjct: 298 NVVRISSEPESGLVQISADAQDVGSGSESLASDLSGEPVQIAFNVRYVLDGLKAMEA--- 354

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             D +  R ++  +   +   D DS           Y++MP++I
Sbjct: 355 --DRIKLRCNAPTTPAVLSAADDDSGFT--------YLVMPVQI 388


>gi|300088050|ref|YP_003758572.1| DNA polymerase III subunit beta [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527783|gb|ADJ26251.1| DNA polymerase III, beta subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 181/391 (46%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++  + ++ + L    R    ++T+P++ +VLL  ++G L++ A+  E+ +T  + A 
Sbjct: 1   MRLSCLQENLAKGLNIVGRAAAARSTLPITTNVLLATDEGRLKLSATNLEMAVTCWLGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS TV A L+ + +  L           N+    + +  G     +      +FP 
Sbjct: 61  VEEEGSTTVPAKLMTEFIGSLPPEKVDMTLSGNK---TLTLKCGRFEARMTGVDAKDFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   + ++  +  K  V R  FA AT+E R  L GI    +   L L A   DG R
Sbjct: 118 VPRVENGVNAKVDVAEFKKGVARVVFAAATDESRPVLTGIDAEFDGSVLTLAAA--DGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSMS 238
           LAV ++ +   +++    I+P K +GE+ R+++  D S+ +++   +S+I   ++++ + 
Sbjct: 176 LAVYKMTLSEPVSQKVKAIIPAKTLGEVSRLITDADESIGITVDTQKSQILFKLKNIELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------SS 292
            +L+ G FP Y  +IP S+   + ++     +A     I +      V+L +      + 
Sbjct: 236 SQLLQGTFPQYSQIIPQSHSTRVVLDVAQFLRASRAAQIFARDGGGIVRLIMTPGSGKTP 295

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +L +T  + ++G     ++   +     I FN KYLL+++  ++     +D+V   +  
Sbjct: 296 GRLSITARSEEIGDDQAELDAAISGDEAKIAFNGKYLLDVLSVLT-----EDQVALEVTG 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +S   +R    D         N  YV+MPM
Sbjct: 351 PSSPGVLRPVGSD---------NYIYVVMPM 372


>gi|303236008|ref|ZP_07322611.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN]
 gi|302483881|gb|EFL46873.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN]
          Length = 374

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/344 (26%), Positives = 168/344 (48%), Gaps = 8/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+ T+  + +   L    R+I  K+++P+    +  A++  L I AS  E+ +  ++   
Sbjct: 1   MRFTISSTALSSRLLSLSRVINSKSSLPILNCFVFDASNNQLAITASDSEVVVRMSLNLE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++D  GS  V+   + D V++L +         +E    ++  +G  NF + +  E   P
Sbjct: 61  TLDGNGSFAVNNQNILDAVKELPEQPLTVDVNMDEHMIYISYQNGSYNFPIVNSDEFPIP 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +  ++   S  ++S +L + + R+ FA A +E+   +NGI+F +  E   L  VATDGH
Sbjct: 121 QSLSDD-ATSILISSDILVDNITRSLFATAQDELHPVMNGIYFDLTAE--SLAVVATDGH 177

Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +L      I A  + +P S I+P+K    +   ++     V V              ++ 
Sbjct: 178 KLVRNR--IFALSSNVPASFILPKKPAALLKSFVAKGGGDVVVRFDSRSAEFTFADGNLI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++P Y +VIP +N  ++ ++  +L  A+ RV   +S   Q ++  +++ +L + 
Sbjct: 236 CRLIDGKYPKYNSVIPENNPYQITIDRKSLIGAIRRVLPFASDSSQLIRFHIANGQLDLN 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ D    A ESM   Y   PM I F    +LEI+ N+ S+EV
Sbjct: 296 AEDIDFSTSAKESMTCSYEGNPMSIGFKGSSMLEILGNLQSEEV 339


>gi|67922001|ref|ZP_00515517.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501]
 gi|67856217|gb|EAM51460.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501]
          Length = 396

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/411 (24%), Positives = 193/411 (46%), Gaps = 43/411 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +SD+   L    R +  + T P+  +VL+ A+     +  +  ++ +      S
Sbjct: 1   MKFLCSQSDLNSNLSLVSRAVASRPTHPILANVLVVADSQKNRVSLTAFDLSLGLETSFS 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-----VNISHGDSNFYLQSF 113
            DV   G IT+ A LL +IV +L +G +I+   E E   +     V +      F +++ 
Sbjct: 61  ADVSEDGKITLRAKLLNEIVSRLPEG-EITLMAEEEEDDDDDSQIVVLKSASGQFQVRAM 119

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              EFP     E     +L   +L   ++   FA +++E +  L G+      + L+  A
Sbjct: 120 NAEEFPPLPTVEEGELVQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEFAA 179

Query: 174 VATDGHRLAVAEVDIVAQI----------AKMP-----SIIVPRKAVGEILRILSSKDSS 218
             TDGHRL+V E  +  +            +MP     ++ +P +A+ E+ R+L S+  S
Sbjct: 180 --TDGHRLSVVETTLSPETDDEGNEQGESPEMPNLEGFAVTIPARALRELERMLGSRSES 237

Query: 219 VKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             ++L   E+++   +    ++VR +DG +PNYQ +IP    + + +    L  +++RV+
Sbjct: 238 DTIALQVDEAQVVFQLGYQRLTVRKLDGAYPNYQMLIPQQFSRSICLERKRLLSSLERVA 297

Query: 277 IMSSVRIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           +++  +   VK + S++  ++ ++VD  D+G A ESM         +I FN KYL++ + 
Sbjct: 298 VLADQKNNLVKCTFSNEDGQVSLSVDTQDLGSAKESMPAEVTGNSGEIAFNVKYLMDGLK 357

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +++      ++  +L+  N  V +         N    +   Y++MP++I
Sbjct: 358 ALAT-----KDIKIQLNEGNQPVIL---------NPLGGLQMTYLVMPVQI 394


>gi|224372072|ref|YP_002606444.1| DNA polymerase III subunit beta [Nautilia profundicola AmH]
 gi|223589002|gb|ACM92738.1| DNA polymerase III, beta subunit [Nautilia profundicola AmH]
          Length = 350

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 93/348 (26%), Positives = 173/348 (49%), Gaps = 30/348 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +E+  I  +L       E+K+   ++ H+L++AN+ L+ +KA+  EI I     A 
Sbjct: 1   MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIKANEKLI-LKATDKEIGIKVITNAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPESE 117
           +   G++T++     DI++ LQ+       KE E+ TE N   I+   S + L SF  SE
Sbjct: 60  IIEPGTVTINGKRFLDIIKTLQN-------KEIEIKTEENQITITQDSSIYKLTSFNASE 112

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     + +   ++ +  L   +++ +  +     +Y LNG  F + E   K   V+TD
Sbjct: 113 FPEFPNTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDLGE---KTNFVSTD 169

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             RLAV      A+ +K   IIVP++++ EI R++      +++   +  + L    +  
Sbjct: 170 TRRLAVYYSKAKARDSK---IIVPKRSIAEIKRVIRD---DMQIFYDDVYLILKNNEILF 223

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LI+G+FP Y+ +IP S   EL +        + +VSI+S+     VK+++ +DK+  
Sbjct: 224 FTKLINGKFPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISN----EVKITIKNDKIIF 279

Query: 298 TVDNPDMGKAIESMNVYYNECPM-DICF--NYKYLLEIIDNISSDEVV 342
              + +  +A  S ++     P+ D  F  N +Y+++ ++ I +D  V
Sbjct: 280 ESISDETMQAKTSFDL---NTPLEDFTFAVNSRYIMDFLNVIENDTFV 324


>gi|225867619|ref|YP_002743567.1| DNA polymerase III, beta chain [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700895|emb|CAW97554.1| DNA polymerase III, beta chain [Streptococcus equi subsp.
           zooepidemicus]
          Length = 378

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 175/352 (49%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S
Sbjct: 2   IQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A    +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSTGAVLLEASFFINIISSLPD---VSLEFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
              S++P  +E        L + +LK+++  T FA + +E R  L G+   +++ +D K 
Sbjct: 118 KDISQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S++   
Sbjct: 177 -AVATDSHRMSQRLITLDKTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++    + E   N  +LR A++R  ++S + +   VKL +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLMKDFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
            ++++   V++P++GK  E ++V       + I FN  YL+E +  I S+ V
Sbjct: 295 EANRISAHVNSPEVGKVNEDLDVVSQAGSDLTISFNPTYLIEALKAIKSETV 346


>gi|49479172|ref|YP_036786.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330728|gb|AAT61374.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 376

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+ 
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSV 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E  ++I F+ ++++E++  I  + +
Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEVLKAIKEETI 345


>gi|54025936|ref|YP_120178.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152]
 gi|54017444|dbj|BAD58814.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM
           10152]
          Length = 381

 Score =  111 bits (277), Expect = 2e-22,   Method: Compositional matrix adjust.
 Identities = 99/391 (25%), Positives = 177/391 (45%), Gaps = 20/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  V R D+ +      R +  +  +PV     L+A+D  L I     E+     I A 
Sbjct: 3   IRFRVARGDLADAATWVARSLPSRPPVPVLGGAHLRADDDGLTISVFDYEVSAQMRIAAE 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + VS  LL DI + L +    I+F      G+ V I+ G + F L + P  ++P
Sbjct: 63  VAHDGEVLVSGKLLADITKALPNKPVDITFD-----GSRVLIACGSAKFSLPTMPVEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     S ELA+ +    V +   A   ++    L GI   I+  ++ L A  TD +
Sbjct: 118 KLPDVP-ARSGELAADLFATAVSQVAVAAGRDDTLPMLTGIRVEIDGAEVTLAA--TDRY 174

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV  ++       + + ++VP + + E ++ L S  +  ++++ +S   L       +
Sbjct: 175 RLAVRTLEWSPTDPSVETQVLVPARTLAEAVKALESA-APARLAIDDSMFGLVNARRRTT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL+D EFP ++ ++P  +     V   +L  A+ RV++++  R   V+L  S D L ++
Sbjct: 234 TRLLDAEFPKFRQLLPKEHTSVATVFVPDLVDAIKRVALVAE-RGAQVRLEFSEDGLLLS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D G+A E++   +   P+ I FN  YL++ +  + S  V     +     +  +V 
Sbjct: 293 AGGDDAGRAEEAVPAEFRGEPLTIAFNPGYLMDGLTALHSTSV----TLGFTTPTRPAVL 348

Query: 359 IRGKD---KDSKNNKDNKVNAF-YVLMPMRI 385
           +   D   K+S          F Y+LMP+RI
Sbjct: 349 VPSGDVEVKESSGGFAALSGPFVYMLMPVRI 379


>gi|227543720|ref|ZP_03973769.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300908785|ref|ZP_07126248.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           SD2112]
 gi|227186288|gb|EEI66359.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300894192|gb|EFK87550.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           SD2112]
          Length = 380

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/342 (26%), Positives = 165/342 (48%), Gaps = 19/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M  T+ RS  +  L +  R I  K TIP+   + +  N   + +  S  +I I   I A 
Sbjct: 1   MNFTINRSAFISQLNNILRAISSKTTIPILTGLKMVVNKDNIVLTGSNSDITIESVINAN 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  G+I + A    DIV+KL D  +++   E   G + +I+ G + F +   
Sbjct: 61  DAENDLTIEATGAIVLPARFFSDIVKKLPD-KKVTI--EVTSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   S  L + +LK ++ +T  A++ +E R  L G+  H+  +D  L A
Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGV--HMTLKDGVLTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRLA  +V ++  I       +I+P K++ E+  ++S     V++ ++E+++   
Sbjct: 176 VATDSHRLAQRKV-VLENIDNSIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFI 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
             +     RL++G +P    +IP + D  + +       +++R S++S   R   VKLSL
Sbjct: 235 FGNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSL 294

Query: 291 SSDKLCMTV--DNPDMGKAIES-MNVYYNECPMDICFNYKYL 329
              +  + +  D+PD+G   E  +    +   ++I FN  Y+
Sbjct: 295 KPSESLVRISGDSPDIGTVEEKVVTSALDGNDLEISFNPNYM 336


>gi|196032677|ref|ZP_03100091.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|218903815|ref|YP_002451649.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228927740|ref|ZP_04090788.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946302|ref|ZP_04108629.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122239|ref|ZP_04251453.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
 gi|195995428|gb|EDX59382.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|218538894|gb|ACK91292.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228661088|gb|EEL16714.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
 gi|228813352|gb|EEM59646.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228831803|gb|EEM77392.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 376

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILQVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  ++V   E  ++I F+ +++L+ +  I  + V
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGEKQLNISFDGRFMLDALRAIKEETV 345


>gi|30262664|ref|NP_845041.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames]
 gi|47527976|ref|YP_019325.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185507|ref|YP_028759.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne]
 gi|165869103|ref|ZP_02213763.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
 gi|167632459|ref|ZP_02390786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|167637875|ref|ZP_02396154.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|170685339|ref|ZP_02876563.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|170704813|ref|ZP_02895279.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|177649679|ref|ZP_02932681.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190565349|ref|ZP_03018269.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814502|ref|YP_002814511.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229604660|ref|YP_002866976.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
 gi|254685252|ref|ZP_05149112.1| DNA polymerase III subunit beta [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722660|ref|ZP_05184448.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055]
 gi|254737705|ref|ZP_05195408.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743118|ref|ZP_05200803.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B]
 gi|254752020|ref|ZP_05204057.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum]
 gi|254760541|ref|ZP_05212565.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia
           94]
 gi|30257296|gb|AAP26527.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames]
 gi|47503124|gb|AAT31800.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179434|gb|AAT54810.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne]
 gi|164715829|gb|EDR21346.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
 gi|167514424|gb|EDR89791.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|167532757|gb|EDR95393.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|170130614|gb|EDS99475.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|170670699|gb|EDT21438.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|172084753|gb|EDT69811.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190563376|gb|EDV17341.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007484|gb|ACP17227.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229269068|gb|ACQ50705.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
          Length = 376

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R+ L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E   ++V   +  ++I F+ +++L+ +  I  + V
Sbjct: 293 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345


>gi|218291095|ref|ZP_03495118.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238980|gb|EED06187.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 374

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/331 (27%), Positives = 156/331 (47%), Gaps = 21/331 (6%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           ++  A D  L I+   P  E TG     V   G+I + A    DIVRKL D  +I    +
Sbjct: 42  IVATAYDLELAIQTRVPVGEETGL---RVHKTGAIVLPARYFGDIVRKLPD-TEIHMRVD 97

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
               TE  IS     F+L      EFP         S ++ +S L  L+E T FA AT E
Sbjct: 98  ANYMTE--ISAQSVEFHLHGIDAEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSE 155

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILR 210
           +R  L G+   I  +   L  +ATDG RLA   V      A +P   +++P K++ E+ +
Sbjct: 156 VRPVLTGV--SITSDPTHLTFIATDGLRLAQHRVPQ----ADLPERQVVIPAKSLSELSK 209

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           IL   ++ V++ L+ S     I       RL++G +P+   +IP S   ++ +       
Sbjct: 210 ILPEDETPVEMVLTPSHGLFVIGPTRFYTRLLEGTYPDTSRLIPRSARTQVVLEGDAFLH 269

Query: 271 AVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKY 328
           A+DR ++++  +    V+L ++ D L +T  +P++G   E+++    E   + I FN +Y
Sbjct: 270 AIDRAALIARDKDNHMVRLEVTGDTLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRY 329

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           ++E +  + +      E+  R + +N +  I
Sbjct: 330 VIEAVRALDA-----AEIAIRFNGANQAFVI 355


>gi|257054091|ref|YP_003131923.1| DNA polymerase III subunit beta [Saccharomonospora viridis DSM
           43017]
 gi|256583963|gb|ACU95096.1| DNA polymerase III, beta subunit [Saccharomonospora viridis DSM
           43017]
          Length = 379

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 106/395 (26%), Positives = 178/395 (45%), Gaps = 28/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN----DGLLEIKASGPEIEI--T 54
           MKI VER  + E +    R +  +  +PV   VLL A     DG   +  SG + E+  T
Sbjct: 1   MKIRVERDGLAEAVAWVARSLPSRPPVPVLGGVLLDAGGDSGDGADTLTISGFDYEVSAT 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ-ISFFKENELGTEVNISHGDSNFYLQSF 113
             +P+++   G   VS  LL DI + L   AQ +    E   G  V+I+ G++ F L + 
Sbjct: 61  AGVPSTIAEGGRTLVSGRLLADITKALP--AQPVDISVE---GARVSITCGNAKFSLPTM 115

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  ++P    +  + + E+A       V +   A   ++    L G+   I    L L  
Sbjct: 116 PVEDYPELPAQPEL-AGEVAGDAFAQAVAQVAVAAGKDDTLPMLTGMRVEITGSTLTL-- 172

Query: 174 VATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD  RLA+ E     A+     +++VP + + +  + L S  ++V++ L+     L +
Sbjct: 173 VATDRFRLAMREFSWQPAEGITDSAVLVPARTLADAAKSLGSAGTTVQIGLAGGDGLLGL 232

Query: 233 ESLS--MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                  + RLID EFP Y+ ++P        ++   L +A+ RVS+++    Q V+L  
Sbjct: 233 SGGGKFTTTRLIDAEFPPYRQLLPSDYSSRAILHVPALTEAIKRVSLVAERGTQ-VRLEF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L +     D G A E + V Y   P+ I FN  YL + +  + ++     E+ F  
Sbjct: 292 EDGSLRLAAGGDDEGSAEEELPVDYEGEPVTIAFNPSYLADGLGALHAERA---ELTFT- 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + N    I+  D    +N +      Y+LMP+R+
Sbjct: 348 -TPNRPALIKPAD----DNGEVVPGYLYLLMPVRL 377


>gi|228933970|ref|ZP_04096813.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825666|gb|EEM71456.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 380

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 5   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 65  IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R+ L G+  HI  +  KL 
Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGV--HIELDHNKLI 178

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 179 CAATDSHRLAIRETLISTNMK--ANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296

Query: 292 SDKLCMTVDNP-DMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E   ++V   +  ++I F+ +++L+ +  I  + V
Sbjct: 297 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 349


>gi|313678902|ref|YP_004056641.1| DNA polymerase III subunit beta [Oceanithermus profundus DSM 14977]
 gi|313151617|gb|ADR35468.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM
           14977]
          Length = 361

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 87/342 (25%), Positives = 159/342 (46%), Gaps = 17/342 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +    E LG   RII  + + P   H+  +  +G L ++ S  E+++   +PA 
Sbjct: 1   MQVRLPKRTFAEALGMLERIIPGRASNPALTHLRFEVAEGGLRLQGSNGELDLELVVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           V+      V   L+  +VR L  G  +      ELG E   + I  G     L +   +E
Sbjct: 61  VEGEAVRLVPGQLIGQVVRNLP-GELV------ELGLEEGQLTIESGSFATRLTTADPAE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP    E    +  L +  L   + R  +A + E+ R    G+   ++    +L +VA+D
Sbjct: 114 FPPLAFEAETVA-RLPARELGRALARVRYAASGEDYRAIFRGVQLELH--PTRLRSVASD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G RLA+ ++++     +    +VP ++V EI+R+L   +  V + L    + L  E   M
Sbjct: 171 GFRLALYDLELALDAER--KFVVPARSVDEIVRVLERTEGEVALGLLGGHLTLAAEGFRM 228

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L++GEFP+Y+ VIP     E  ++ T L+ ++ RV +++      V L     +L +
Sbjct: 229 AAALMEGEFPDYERVIPPEFALEAEIDATALKDSLKRVKVLADRNNHRVDLVFEDGRLEV 288

Query: 298 TVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISS 338
             +  D G+ +E + V    E  M + +N +YL   +  I+ 
Sbjct: 289 VAEG-DYGRGVERLEVDARGEAQMVLAYNAEYLEGALGPIAG 329


>gi|309792259|ref|ZP_07686731.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6]
 gi|308225800|gb|EFO79556.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6]
          Length = 377

 Score =  110 bits (276), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/367 (25%), Positives = 169/367 (46%), Gaps = 17/367 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++   L      +  K+T+PV  +VLL  + G L++ A+  ++ IT  I A 
Sbjct: 1   MKLTCLQENLKRGLATVSHAVAGKSTLPVLSNVLLATDGGRLKLAATNLDVGITHWIGAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV A LL D++  L +              +V  +   SN  ++     EFP 
Sbjct: 61  VQEEGAITVPAKLLADVIGGLPNDRVTLTLDARTQTVKVECARYTSN--IKGIEAEEFPI 118

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   +  L+ + L+  +++  FA A+++ R  L G+   + E   +L   A DG 
Sbjct: 119 IPTVSDRAPAVSLSPATLREAIDQVAFAAASDDTRPVLAGVLVRLREN--RLTFAAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237
           RLA   V +   +A+    IVP +++ E+ RI +  +  + +++S S  +   + E+  +
Sbjct: 177 RLATRVVQLPEAVAQPQEFIVPARSLVELARIAADSEGQISLTMSPSGGQALFHTENTEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS------LS 291
             RLIDG+FP+++ +IP        ++   L +AV   S  ++     VKL+      L 
Sbjct: 237 VSRLIDGKFPDFERIIPSQYLTRSILDTAELAKAVKLASFFANPSQNVVKLTLEPGGELG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++ +  ++G     ++   +     I  N KYL + I  I + +V  +       
Sbjct: 297 PGRLVISANAAEVGDNTGEIDGMIHGEGGQIALNVKYLADAIAAIKTAQVALET----QG 352

Query: 352 SSNSSVF 358
           S N  VF
Sbjct: 353 SQNPGVF 359


>gi|229011945|ref|ZP_04169125.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048]
 gi|228749359|gb|EEL99204.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048]
          Length = 376

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 182/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I+   L +C
Sbjct: 117 LSANEFPNVPFLDSHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           A ATD HRLA+ E+ I +  AK+ + IVP   + E+L+++SS  + V + LSES I    
Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMSSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  +   + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|148543245|ref|YP_001270615.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016]
 gi|184152657|ref|YP_001840998.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112]
 gi|227364308|ref|ZP_03848401.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3]
 gi|325683507|ref|ZP_08163023.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           MM4-1A]
 gi|148530279|gb|ABQ82278.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016]
 gi|183224001|dbj|BAG24518.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112]
 gi|227070621|gb|EEI08951.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3]
 gi|324977857|gb|EGC14808.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 380

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 92/342 (26%), Positives = 168/342 (49%), Gaps = 19/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M  T+ RS  +  L +  R I  K TIP+   + +  N+  + +  S  +I I   I A 
Sbjct: 1   MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  G+I + A    DIV+KL D  +++   E   G + +I+ G + F +   
Sbjct: 61  DADNDLTIEETGAIVLPARFFSDIVKKLPD-KKVTI--EVTSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   S  L + +LK ++ +T  A++ +E R  L G+  H+  +D  L A
Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGV--HMMLKDGVLTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRLA  +V ++  I       +I+P K++ E+  ++S     V++ ++E+++   
Sbjct: 176 VATDSHRLAQRKV-VLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFI 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
             +     RL++G +P    +IP + D  + +       +++R S++S   R   VKLSL
Sbjct: 235 FGNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSL 294

Query: 291 --SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYL 329
             S + + ++ D+PD+G   E  +    +   ++I FN  Y+
Sbjct: 295 KPSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYM 336


>gi|289677551|ref|ZP_06498441.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           FF5]
          Length = 186

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 59/188 (31%), Positives = 110/188 (58%), Gaps = 14/188 (7%)

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           +IVPRK + E+ R+L+ +D +V + L +  I       + + +L+DG+FP+Y+ V+P   
Sbjct: 13  VIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGG 72

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE 317
           DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  +NP+  +A E ++V YN 
Sbjct: 73  DKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYNG 132

Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377
             ++I FN  YLL+++  +++     ++V   L  SNSS  ++  D D         ++ 
Sbjct: 133 DSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALVQESDND---------DSA 178

Query: 378 YVLMPMRI 385
           YV+MPMR+
Sbjct: 179 YVVMPMRL 186


>gi|317489244|ref|ZP_07947761.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325832265|ref|ZP_08165264.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1]
 gi|316911645|gb|EFV33237.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325486101|gb|EGC88555.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1]
          Length = 366

 Score =  110 bits (275), Expect = 3e-22,   Method: Compositional matrix adjust.
 Identities = 91/389 (23%), Positives = 187/389 (48%), Gaps = 28/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +S++   L    + I  ++T+P+   + L A+D  L ++A+  E+ I  ++ A 
Sbjct: 1   MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V   L  +IV+ L D A +    E++      I+   ++F +++    +FP 
Sbjct: 61  IEETGKAVVPGKLFSEIVKNLPDAA-VHVAAEDDSAV---ITCDTASFSIKTLDAEDFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      +  +   ++V+R    ++ +E R  L G+   I  ED  L  VATD +R
Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    A+    ++    + EI  +  S+D  +K++L+E++I +         R
Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSDKLC 296
            ++G FPNY+ ++P S    + ++  +L   V R S++    S VR     ++++S  + 
Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLLGQTSSPVRF---DINMASQTVQ 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++    D+G A E+++       ++I FNY Y+L+ + ++++D V               
Sbjct: 291 LSAVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVNTDNVF-------------- 336

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++   K      D   N  Y++MP+RI
Sbjct: 337 LEVQSSMKPGIFKADEGENFLYLVMPVRI 365


>gi|225869489|ref|YP_002745436.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi
           4047]
 gi|225698893|emb|CAW91874.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi
           4047]
          Length = 378

 Score =  110 bits (275), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 172/351 (49%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S
Sbjct: 2   IQFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A    +I+  L D   +S  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSTGAVLLEASFFINIISSLPD---VSLEFKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              S++P  +E        L + +LK+++  T FA + +E R  L G+   +++      
Sbjct: 118 KDVSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHK-NFK 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S++    
Sbjct: 177 AVATDSHRMSQRLITLEKTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           + +S   RL++G +P+   ++    + E   N  +LR A++R  ++S + +   VKL + 
Sbjct: 236 DYISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIE 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           ++++   V++P++GK  E ++V       + I FN  YL+E +  I S+ V
Sbjct: 296 ANRISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKSETV 346


>gi|229060366|ref|ZP_04197732.1| DNA polymerase III, beta subunit [Bacillus cereus AH603]
 gi|228718956|gb|EEL70573.1| DNA polymerase III, beta subunit [Bacillus cereus AH603]
          Length = 376

 Score =  110 bits (274), Expect = 4e-22,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I+   L +C
Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           A ATD HRLA+ E+ I +  AK+ + IVP   + E+L++++S  + V + LSES I    
Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  +   + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNIAFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|227891670|ref|ZP_04009475.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC
           11741]
 gi|227866473|gb|EEJ73894.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC
           11741]
          Length = 379

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 176/353 (49%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R+  ++ L    R I  K TI +   + +  +   L +  S  +I I   I  +
Sbjct: 1   MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60

Query: 61  VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            D         G++ + A    +IV+KL +  Q    + NE   +  I+ G + F +   
Sbjct: 61  DDNAALQIEQEGAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P   E +      +   +LK ++ +T  A++ +E R  L GI  H+  ++ +L A
Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + 
Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL-- 290
           + S   RL++G++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL++  
Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342
           S+  + ++ + P++G   E ++    E   ++I FN  Y+ + + +    E+ 
Sbjct: 296 SAQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 348


>gi|307297361|ref|ZP_07577167.1| DNA polymerase III, beta subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916621|gb|EFN47003.1| DNA polymerase III, beta subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 367

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 90/344 (26%), Positives = 164/344 (47%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAI-P 58
           MK    RS+IL  L      +  K+  P+   +     +D  ++++A+  E  IT  + P
Sbjct: 1   MKFVAARSEILTRLESVSGAVAPKSVKPILSGIYFSMKDDSTVKLQATDLETAITTELRP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             +D      + A L+ +IVR L +G ++ F  E+   T V I  G + F L +    EF
Sbjct: 61  KHIDGRCDFVIDARLVLEIVRNLPEG-EVVFETED---TNVIIREGSARFTLPTMDPEEF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +       F ++ S ++ +++R  F  A +E    LN +++   +  L+L  VA DG
Sbjct: 117 PIVEPTSGGLEFTVSVSSIELMIDRVIFCAARDEFMRNLNSVYWEFEDGYLRL--VAADG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237
            R+A++E  I   I      ++  K++ ++   L +  S + KV+   SR+    +   +
Sbjct: 175 FRMALSEERIDLSIDD--HFLLTLKSMKDLQNSLKAAMSDLLKVTYDGSRVQFLFDGTEI 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++D EFP+Y+ V+P S    L ++      AV R SI + +   +VK  +  ++  +
Sbjct: 233 VTKVVDAEFPDYKKVLPKSFKARLVLSTEVFSDAVRRASIAARLGSDSVKFEIDDEQFKI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
              +PD G++IE ++       + I FN ++L E    I SD V
Sbjct: 293 VARSPDHGESIEILDANKEGDNIVIAFNPRFLSESAKKIDSDTV 336


>gi|90960992|ref|YP_534908.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118]
 gi|90820186|gb|ABD98825.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118]
          Length = 379

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 176/353 (49%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R+  ++ L    R I  K TI +   + +  +   L +  S  +I I   I  +
Sbjct: 1   MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60

Query: 61  VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            D         G++ + A    +IV+KL +  Q    + NE   +  I+ G + F +   
Sbjct: 61  DDNAALQIEQEGAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P   E +      +   +LK ++ +T  A++ +E R  L GI  H+  ++ +L A
Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + 
Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL-- 290
           + S   RL++G++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL++  
Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342
           S+  + ++ + P++G   E ++    E   ++I FN  Y+ + + +    E+ 
Sbjct: 296 SAQSVILSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 348


>gi|41406100|ref|NP_958936.1| DNA polymerase III subunit beta [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|13431485|sp|Q9L7L6|DPO3B_MYCPA RecName: Full=DNA polymerase III subunit beta
 gi|6969268|gb|AAF33689.1| putative dnaN [Mycobacterium avium subsp. paratuberculosis]
 gi|41394448|gb|AAS02319.1| DnaN [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 399

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 98/401 (24%), Positives = 177/401 (44%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A 
Sbjct: 13  LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DIVR L +   I F+ +   G  V ++ G + F L +    ++P+
Sbjct: 73  IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 128

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  EE   +  L + +    + +   A   ++    L GI   I+ + + L   ATD 
Sbjct: 129 LPTLPEE---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230
            RLAV E+   A    +  +++VP K + E  R      S V++SL        +  + +
Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAART-GIDGSDVRLSLGAGAGVGKDGLLGI 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           +      + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  
Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S   L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F  
Sbjct: 302 SEGSLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGF 356

Query: 351 DSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385
            +      +R   D DS  +     +A      Y+LMP+R+
Sbjct: 357 TTPGKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397


>gi|148927270|ref|ZP_01810840.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp.
           GTL1]
 gi|147887329|gb|EDK72783.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp.
           GTL1]
          Length = 366

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 96/398 (24%), Positives = 181/398 (45%), Gaps = 47/398 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV + ++ + L    R+   K  +P+  ++LL+ ++  L + A+  EI IT  I A 
Sbjct: 1   MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV A L+ + +  L  G  +    E   G  ++I+ G  +  +      EFP 
Sbjct: 61  VAQNGAITVPARLMAEFISNLPKG-NVELSVE---GAHLHIAAGAYSSTINGMEAEEFPE 116

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  E     +E+ + V+K  V +T    +++  R +L G++ H  E DL     ATDG
Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFA--ATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL+  ++  + +  K    IVP   + ++LR+L     +V++   E+++   +  + ++
Sbjct: 175 YRLSERKIGAMKEDLKX---IVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVT 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLC 296
            RLIDG+F +Y+ +IP   D    +     ++   R++ ++S+  R     ++L +DK  
Sbjct: 232 SRLIDGQFVDYRQLIPKGAD----IASVLRKEEFSRITKIASLFARESGGSITLKTDKEK 287

Query: 297 MTVDNPDMGKAIESMNVYYNE----------CPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            T+       AI S+     E              +  N +YLLE +  I         +
Sbjct: 288 GTL-------AIHSIASQLGENTSEAEAKVSADGQVTLNSRYLLEALGAIDG-----SSI 335

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            FR     S   +   D ++           +++MP++
Sbjct: 336 TFRFSGKLSPCRLTATDDEATYQ--------HIIMPLK 365


>gi|291297540|ref|YP_003508818.1| DNA polymerase III subunit beta [Stackebrandtia nassauensis DSM
           44728]
 gi|290566760|gb|ADD39725.1| DNA polymerase III, beta subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 380

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 93/392 (23%), Positives = 180/392 (45%), Gaps = 23/392 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + + +    + +  + ++PV    L+  +DG L I     E+     +P +
Sbjct: 1   MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVSSQVTLPVT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS  VS  LL +IV+ L     +    E   G+ V I+ G + F L + P  ++PS
Sbjct: 61  SDASGSALVSGKLLAEIVKALP-AKPVDVAAE---GSHVEITCGSARFTLPTMPVEDYPS 116

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  E V + +  ++     V +T  A   ++    + G+        L L  +ATD +
Sbjct: 117 LPDMPEAVGTID--AAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLAL--LATDRY 172

Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSE------SRIHLNI 232
           R+A+ ++        +  + ++P KA+ +  + L S+   V ++L +        +    
Sbjct: 173 RMAIRDLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVGFAA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    + R++DG+ P  +++IP +   ELRVN   L     RVS+++  R   ++L++  
Sbjct: 233 DGRRTTSRVLDGQLPPLRSLIPVTYAAELRVNAAELASVARRVSLVTE-RNSPLRLNVDG 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D L +     +   A E+M+  Y+   M + FN +YLL+ +  IS+        VF    
Sbjct: 292 DGLVVEAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISA-----PVAVFSFTE 346

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               V ++G DK + ++  +     ++L P+R
Sbjct: 347 PGKPVTLKG-DKANADDDGDFSGYTHLLQPLR 377


>gi|196040371|ref|ZP_03107672.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
 gi|196028856|gb|EDX67462.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
          Length = 376

 Score =  110 bits (274), Expect = 5e-22,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E  ++I F+ ++++E +  I  + +
Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIKEETI 345


>gi|15612565|ref|NP_240868.1| DNA polymerase III subunit beta [Bacillus halodurans C-125]
 gi|13959350|sp|Q9RCA1|DPO3B_BACHD RecName: Full=DNA polymerase III subunit beta
 gi|5672648|dbj|BAA82686.1| 58%-identity [Bacillus halodurans]
 gi|10172614|dbj|BAB03721.1| DNA polymerase III (beta subunit) [Bacillus halodurans C-125]
          Length = 380

 Score =  110 bits (274), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 172/354 (48%), Gaps = 18/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   ++R   ++ + H  + +  + TIP+   + + A+   + +  S  +I I   IP  
Sbjct: 1   MHFVIDRDIFVQNVNHVSKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDISIETFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A +  +IV+KL +  +I    ++   T   I  G S F L  
Sbjct: 61  EGDRQNVEVKQEGSIVLQAKVFAEIVKKLPE-QEIEIHVQDSFVT--TIRSGSSVFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P     E  + F L   +LK+++ +T FA++T+E R  L G+ F I  ED  L 
Sbjct: 118 LDPDEYPRLPVLEEDHVFRLPQKILKDIIRQTVFAVSTQETRPVLTGVNFEI--EDGILT 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+ +V +     ++   ++++P K++ E+ +IL   +  + + ++E++   
Sbjct: 176 CTATDSHRLAMRKVPVEKNDDELQFSNVVIPGKSLNELSKILDENEELLDIVVTENQTLF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
            ++++    RL++G++P  +N+IP        V+     Q ++R  ++S   + Q + L 
Sbjct: 236 KLKNMLFFSRLLEGKYPVTKNMIPKEAKTSFAVHTKAFLQTLERALLLSREGKNQVINLK 295

Query: 290 LSSDKLC-MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
              D +  +T   P++GK  E++     E   + I FN K +++ +  + S+ +
Sbjct: 296 TLGDGVVEVTAITPEIGKVTENVATQGLEGEELRISFNGKNVIDALKVVDSESI 349


>gi|300777078|ref|ZP_07086936.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300502588|gb|EFK33728.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 376

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 152/345 (44%), Gaps = 6/345 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   ++ + L     +I    + P+  + L + +   + I AS  E  +  ++   
Sbjct: 1   MKFIISSGELQKALQTVSGVISSSQSRPILENYLFELDGNNVTITASDGETTLVTSLEVK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118
            D  G   V A +  D ++   +       K+N  GT  ++ I     NF +      ++
Sbjct: 61  SDDTGKFAVPAKIFQDFIKTYGEQPLTFVVKDNAEGTGSQLEILDEKDNFAVALDNADDY 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +   S  + + VL   +  T FA + + +R  + G+ F   E +     V+TD 
Sbjct: 121 PELPEFDASQSVTMPAGVLSEALTNTLFATSNDSLRPVMTGVLFQFGENETNF--VSTDS 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL V +   +     M   I+P+K +     IL+S +  V +  +E+            
Sbjct: 179 HRLVVYKRADLMNAEPM-EFIMPKKPLNIFKNILASSNEDVTIDFNENMAKFTFGKHIWI 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY  VIP  N   L +N   L  A+ R SIMS+     V+  LS + L + 
Sbjct: 238 CRLIDGKYPNYTAVIPKENPNVLTINRNLLLGAIKRASIMSNKSTNQVRFKLSGNILHLH 297

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++ +   KA   +   YN   ++I F+ K+L E++  + SD++ 
Sbjct: 298 AEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLTILGSDDIT 342


>gi|163940409|ref|YP_001645293.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4]
 gi|163862606|gb|ABY43665.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 376

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I+   L +C
Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           A ATD HRLA+ E+ I +  AK+ + IVP   + E+L++++S  + V + LSES I    
Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPNSTISELLKLMNSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  +   + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|324326663|gb|ADY21923.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 376

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 93/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIKKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILKVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDYNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  ++V   +  ++I F+ +++L+ +  I  + V
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345


>gi|288926238|ref|ZP_06420164.1| DNA polymerase III, beta subunit [Prevotella buccae D17]
 gi|315606364|ref|ZP_07881380.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae
           ATCC 33574]
 gi|288337017|gb|EFC75377.1| DNA polymerase III, beta subunit [Prevotella buccae D17]
 gi|315252055|gb|EFU32028.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae
           ATCC 33574]
          Length = 374

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 90/347 (25%), Positives = 161/347 (46%), Gaps = 12/347 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  + +   L    R+I  KN +P+    L Q  +  L I A   E  +  A+   
Sbjct: 1   MRFTLSSTALSSRLNTLARVINSKNALPILDCFLFQVENNRLLITAGDGENVMQSAL--E 58

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           +D C   G   V    + D V++L +              ++   +G  NF  Q+    E
Sbjct: 59  LDSCEGEGEFAVPNRTILDAVKELPEQPLNFDIDTQSFAIKIVYQNGLYNFTAQN--AEE 116

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P  +  E+   +  + ++VL + + R+ FA A +E+R  +NGI+F +  + L +  VA+
Sbjct: 117 YPRMQPVEDGATTMTMDAAVLVDNISRSLFATAQDELRPVMNGIYFDLTPDALAI--VAS 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGH+L V   +   +     + I+P+K    +  +LS     V V  ++    +      
Sbjct: 175 DGHKL-VRNKNFNIKSETPAAFILPKKPASLLKNVLSKDGGEVIVKFNDRSAEMRFSDGV 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLI+G +PNY +VIP  N   + ++   L  A+ RV   +S   Q V+  + S ++ 
Sbjct: 234 LYCRLIEGRYPNYNSVIPQDNPNRVTIDRRALLGALRRVLPFASESSQLVRFHVESGRME 293

Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ ++ D    A E +   Y+  PM I F    + EI+ ++ SDEVV
Sbjct: 294 LSGEDIDFATSAKEQVTCEYSGQPMSIGFKGGSMQEILSSLESDEVV 340


>gi|293400057|ref|ZP_06644203.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306457|gb|EFE47700.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 372

 Score =  109 bits (273), Expect = 6e-22,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 165/344 (47%), Gaps = 15/344 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V + +    L  A R I   + +P    V ++A    L +  S  +I I   +  S
Sbjct: 1   MYFKVSKKEFYNALSVAARAISTFSPLPAFSGVKIEATMDCLILTGSDSDISIQTKLKKS 60

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A  + +IVRK+ D  +I F  E   G+   IS   + F +    
Sbjct: 61  EHCVLEIHDMGSIVIEAKYILEIVRKI-DADEIEF--EMLDGSLTKISGNTAEFRINGMR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            SE+P+    +    F ++  +LK ++ +T FA + +E R  L G+ F   E  L    V
Sbjct: 118 ASEYPAIDFSKPNECFNVSEDILKKIILQTSFATSDKETRPVLTGVNFQCKEHQLH--CV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   V+I   +    +I +P K++ E+++ L   +  V++++++ +    I  
Sbjct: 176 ATDSYRLAKKTVEIEESLNF--NITIPAKSLQEVVKTLEG-EGDVEIAVNDKKAQFIIHD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K +LS  +
Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDAHDLLNAIDRASFIKNDGVSVIKFNLSEQE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNIS 337
             ++  + ++G + E + +  ++   ++I  N +Y+ + I  +S
Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFSGNALEISCNGRYVFDAIKALS 336


>gi|226362896|ref|YP_002780676.1| DNA polymerase III subunit beta [Rhodococcus opacus B4]
 gi|226241383|dbj|BAH51731.1| DNA polymerase III beta subunit [Rhodococcus opacus B4]
          Length = 394

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 99/400 (24%), Positives = 177/400 (44%), Gaps = 28/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R +  + +    R +  +  +PV   VLL A +  L +     E+     + A 
Sbjct: 6   LKFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI + L +   +    E   GT V I+ G + F L + P  ++P 
Sbjct: 66  VGSAGQVLVSGKLLADITKSLPN-KPVDVTLE---GTRVLITCGSAKFSLPTMPVEDYPQ 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  + + V    + +   A   ++    L GI   I    + L   ATD  R
Sbjct: 122 LPQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVLA--ATDRFR 178

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSM- 237
           LAV E++   A      ++++P K + E  + L+   +S V+++L       N   L + 
Sbjct: 179 LAVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIV 238

Query: 238 ------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL+D EFP ++ ++P  +     V    L +A+ RV++++  R   V+L  S
Sbjct: 239 NDGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVAE-RGAQVRLQFS 297

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           ++ L ++    D G+A E +N  +    + I FN  YL   ID +SS  +  ++V+F   
Sbjct: 298 TEGLLLSAGGDDAGRAEEGLNAVFQGESLTIAFNPGYL---IDGLSS--LHSEQVLFGFT 352

Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385
           + +    +R   +      DS N    +    Y+LMP+R+
Sbjct: 353 TPSRPAVLRPATEEEIEPDDSGNFAAPESAYTYLLMPVRL 392


>gi|228915297|ref|ZP_04078890.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844240|gb|EEM89298.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 380

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 5   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 65  IDDEQITTILQVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 178

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 179 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296

Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  ++V   +  ++I F+ +++L+ +  I  + V
Sbjct: 297 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 349


>gi|256826462|ref|YP_003150421.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641]
 gi|256582605|gb|ACU93739.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641]
          Length = 365

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 94/388 (24%), Positives = 183/388 (47%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + D    L    +    ++T+P+   +       +L ++A+  ++ I  +IPA 
Sbjct: 1   MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIPAF 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV-NISHGDSNFYLQSFPESEFP 119
           ++  G   + + LL D+V+ L + A        E  TE  +I    S+F L++F   +FP
Sbjct: 61  IEEEGEAVIPSKLLTDVVKSLPEAA-----VHVETTTETASIMCESSSFSLKTFDPQDFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E E   +     S   ++V+R    ++ +E R  L G+   +++  L++  VATD +
Sbjct: 116 GFPEVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVHDGMLRM--VATDSY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV ++D         ++I    +    L  LS    S+ ++L+E++I +  +  +   
Sbjct: 174 RLAVTDIDFTTPSEDFTAVI--SGSFMSDLAGLSDTGESLTLALAENQIVVTYDGTTFIN 231

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297
           R I+G +P Y  +IP + +     N   L +AV R S++S+ +   V+  +  +S  + +
Sbjct: 232 RRIEGNYPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQI 290

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D+G+A E++         +I FN+ Y   +ID +SS E   + V   L  S    
Sbjct: 291 STASQDVGEAHETLGAKIQGEDEEIAFNFGY---VIDGLSSIET--ESVQLELQGSMKPG 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R  +++         N  Y++MP+R+
Sbjct: 346 ILRATEQE---------NFLYLIMPVRL 364


>gi|324999883|ref|ZP_08120995.1| DNA polymerase III subunit beta [Pseudonocardia sp. P1]
          Length = 386

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 101/403 (25%), Positives = 181/403 (44%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55
           MK  VER  + +      R +  +  +PV   VL+Q +DG  E   +G ++ ++G     
Sbjct: 1   MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIQ-SDGSDET--AGEKLTVSGFDYET 57

Query: 56  ----AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNF 108
                + A+V   G + VS  LL DI R L         K  +L   G    I+ G+S F
Sbjct: 58  SARVELDATVGEPGRMLVSGRLLADITRALPS-------KPVDLVVDGARATINCGNSRF 110

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L + P  ++P   +     +  +A+  L   V +   A   ++    L GI   I    
Sbjct: 111 SLPTMPVEDYPQLPDMPQ-KAGSVAADALAAAVAQVAVASGRDDTLPMLTGIRLEIEGSQ 169

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSLSES 226
           L L A  TD  RLAV E++   + A + + +++P K + E+ + L+   +  V +S  + 
Sbjct: 170 LTLAA--TDRFRLAVRELEWSPEDASISTAVLIPAKTLAEVAKTLAGSGTVDVALSAGDG 227

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
            + L       + RL+D EFP ++ +IP  +   + ++   L +A+ RVS+++  R+  +
Sbjct: 228 MLGLTGGGRRSTSRLLDAEFPRFRQLIPAEHTTAVELDVAMLVEAIKRVSLVAD-RVAQI 286

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           ++    D L +     D+G A E +    +  P+ I FN  YLL+ +  + +D     ++
Sbjct: 287 RMEFGEDGLRLAAGGDDVGSAEEELPCALDGNPLTIAFNPGYLLDALGALHTDRA---QL 343

Query: 347 VFRLDSSNSSVFIRGKDK----DSKNNKDNKVNAFYVLMPMRI 385
            F   + N    +R   K    D +     K    ++LMP+R+
Sbjct: 344 TF--TTPNRPALVRPVPKPATDDGEAPSPEKSGYLHLLMPVRL 384


>gi|313887623|ref|ZP_07821305.1| DNA polymerase III, beta subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846232|gb|EFR33611.1| DNA polymerase III, beta subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 364

 Score =  109 bits (273), Expect = 7e-22,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 179/343 (52%), Gaps = 11/343 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R ++ + +    + I ++ T+ +   + + A +  L + A+  EI I   + A 
Sbjct: 1   MLIKVNRKELTKHISIVQKAISQRTTMQILEGIKISAKNNSLTLTATDTEISIKTELNAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I +++ L  DI+RKL++   I+   EN +   +N+  GDS F L +    E+P 
Sbjct: 61  VEREGDIVINSRLFGDIIRKLENDI-ININVENYM---MNLKCGDSIFNLSTQKADEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S ++++  LKN+V++T FA++ +E R    G+   I +  +    VA DG R
Sbjct: 117 LPKVEENISIDISAKDLKNIVKKTTFAVSNDESRIVFTGVLMDIKKSYINF--VALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+  ++    I    SII+P +++ E+++I+  ++  +K+++S + I     +      
Sbjct: 175 MAIQRLEKETGIEN--SIIIPSRSLNELVKIIDDEE-DLKLNISRNNIVFKFNNTVFYST 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L+ G+F +Y  ++   +     V+    + AV+R S+++   R   +KL++  + + +  
Sbjct: 232 LLSGDFFSYSALLRDEHKISTSVSKREFQLAVERASLLAREDRANLIKLNVKENYIDIK- 290

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            N ++G   E +    ++  +DI FN +Y+L+ +  + S+E+V
Sbjct: 291 SNSEIGDVFEKVKTSEHDESLDIAFNSRYILDGVKILESEEIV 333


>gi|118478062|ref|YP_895213.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043398|ref|ZP_03110636.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|225864666|ref|YP_002750044.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|229184910|ref|ZP_04312101.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1]
 gi|118417287|gb|ABK85706.1| DNA polymerase III beta subunit family protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|196025707|gb|EDX64376.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|225789614|gb|ACO29831.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|228598563|gb|EEK56192.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1]
          Length = 376

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 167/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLINSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  ++V   +  ++I F+ +++L+ +  I  + V
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIKEETV 345


>gi|251794038|ref|YP_003008769.1| DNA polymerase III subunit beta [Paenibacillus sp. JDR-2]
 gi|247541664|gb|ACS98682.1| DNA polymerase III, beta subunit [Paenibacillus sp. JDR-2]
          Length = 380

 Score =  109 bits (272), Expect = 8e-22,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 191/401 (47%), Gaps = 41/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK+++ + ++ E +    +    + TIP+   + ++     + + AS  +I I   IP  
Sbjct: 1   MKLSISKHELNEAIQQVAKAASSRPTIPILGGIKIEVTHQGVTLTASDTDISIQSFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVN--ISHGDSNFY 109
                 A+VD  G++ + A    +IV+KL  D  +I      E+G      I  G ++  
Sbjct: 61  RDDLVIANVDKPGNVVLPAKFFVEIVKKLPSDNVEI------EVGAHFQTLIRSGSTDIQ 114

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
           +      EFP     E    F++   +LK ++ +T  A +  E    L G+ + + ++ L
Sbjct: 115 MVGLDPEEFPVLPSIEQNELFQMPGDLLKAMIRQTVLAASVNEQTPILTGVLWSLQDKQL 174

Query: 170 KLCAVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           K   VATD HRLA  +A+ +  A   +  ++++  K + E+ +++  +   V + +++++
Sbjct: 175 KF--VATDRHRLASRIAQAETAADY-RFNNVVIAAKTLVELSKLVPDQHGLVDIVVADNQ 231

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
           +   I ++    R++DG +P+   +IP     EL ++   L  A+DR  +MS   +   V
Sbjct: 232 VLFKIGNVLFYTRVLDGTYPDTSKIIPSVFKTELVLDTKKLTDAIDRAYLMSREEKTNIV 291

Query: 287 KLSLSSD-KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           +L+   D  + ++  + ++G+  E +    ++  P+ I FN KY+L+++      +V+D 
Sbjct: 292 RLATMEDGSIEISSSSTELGRVTEQLEPKQFDGEPLKIAFNSKYMLDVL------KVIDS 345

Query: 345 EVVF-RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           E +F     + S + IR  D  S N         YV++P R
Sbjct: 346 EHIFIGFTGAMSPIVIRPTDH-SYNT--------YVILPYR 377


>gi|309776108|ref|ZP_07671099.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916059|gb|EFP61808.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 367

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 164/343 (47%), Gaps = 15/343 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + + +I+ ++    RI      +P    + + AN   + I  S   + +   I   
Sbjct: 1   MNFKISKKEIVSVMNRISRIFAATVVLPAYRGIRITANTSGVSIVVSDGTVSMQEFIDTE 60

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +++  CG   V   L ++IV+K  DG  I   KE +L   + +    +   L  F E ++
Sbjct: 61  IEIYECGECVVDGRLFFEIVKKAADG-MIWIRKEGKL---LKLKSNKAEMKLVIFAEEQY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV-ATD 177
           P+        SF  A+S L++ +++T F+ + ++ R  L G+ FHI ++D   C +  +D
Sbjct: 117 PNIDFSFPKNSFSAAASALEDAIDKTIFSASDQQTRPVLGGLNFHITKQD---CTITGSD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            +RL+   +  + Q  K   + +P+K +     I S  D  + +  SE +  ++  ++ +
Sbjct: 174 SYRLSRIVIPAIGQ--KESVLTIPKKMLSLFTDIFSG-DEELYLHFSERKALISSNNIVL 230

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              L++G FP+   +IP   +  L++    L  A+DR +      +  + L L +D+L +
Sbjct: 231 QSVLLEGAFPDTSKLIPNKFETALKLETEKLIDALDRTAFNKEDGVTIIGLELLTDELLI 290

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISS 338
           T ++ ++G +IES+     E   ++CF  N +Y+LE +  + S
Sbjct: 291 TSESQEVGSSIESIEYIEVEGNQEVCFHCNQQYMLEALKALHS 333


>gi|169351631|ref|ZP_02868569.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552]
 gi|169291853|gb|EDS73986.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552]
          Length = 369

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 91/346 (26%), Positives = 172/346 (49%), Gaps = 13/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R  +L  L    + +  ++ +PV   +    +D  L +  S  +I I   I   
Sbjct: 1   MNFKIKRIKLLNALSKTTKAVSIRSPLPVLTGIKFDLHDDCLILTGSDSDITIQTKIIKD 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D+     G + +++  + DIVRK+ D   I+    +  G    IS   S F L      
Sbjct: 61  EDLTIYETGGVVLNSRYILDIVRKI-DSEYINIQILD--GALTRISSPTSKFDLNGTDIL 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P     +     ++ S VLKN++ +T FA + +E +  L GI F      L+ C  AT
Sbjct: 118 DYPRIDLSKNGIKIDINSLVLKNIISQTKFAASDKEHKPILTGINFKATNNQLE-CT-AT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RLA   V +   +    +I +P+K++ EI +I+  KD  +++ +S+ ++    ++  
Sbjct: 176 DSYRLAKKVVSLNEDVTF--NITIPQKSLDEISKIIE-KDEIIEMYVSDRKVLYVFDNNI 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLIDG FP+   +IP S D EL ++   L  A+DRVS++++ +   +KL +  +++ 
Sbjct: 233 IQTRLIDGSFPDTNRLIPNSFDYELNIDTHYLLNAIDRVSLLTNEQNNIIKLDMDDNQVL 292

Query: 297 MTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++    ++G   E ++  +Y   P+ I F+ KY+ E I   +S ++
Sbjct: 293 LSSYMQEIGSVEEILDKAFYKGEPLSISFSSKYVNEAIRAFNSSKI 338


>gi|303233435|ref|ZP_07320103.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4]
 gi|302480443|gb|EFL43535.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4]
          Length = 369

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 172/353 (48%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V ++   + L   CR +  +NT+ +   V + A++G L ++ +  ++ I  AI A+
Sbjct: 1   MKFSVSQTSFNQALSIVCRGLSSQNTMAILAGVYIHASEGTLTLQTTDLKVSIKHAISAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PE--SE 117
           V+  GS+ VS  LL  IV+ L D A           T+  ++   ++F L +  PE   E
Sbjct: 61  VEEEGSVVVSGALLLKIVKNLPDAA----ITLTSTDTQAQLTCQKASFTLATLNPEDFPE 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     + V   EL +S+L ++V++       +     L+GI    +E   KL   ATD
Sbjct: 117 FPVLNPNQVV---ELPTSLLTSMVDKVFRVTKDDIANPILSGITLVAHEN--KLSMYATD 171

Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
            HRL + +     + + +  + I+P  A  E+L + S  D ++ + L +++I  + E+ +
Sbjct: 172 SHRLVIIDTSTETSSLTEEFNAIIPATAFHELLSLPSLTD-TITLGLCDNQIVFSCENTT 230

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDK 294
                I+G FPN++N+ P +   +L  N T L   + RV+++++     V   ++  +  
Sbjct: 231 FVTLKIEGMFPNFKNLFPTTCATKLTCNPTELSAVIRRVALVTTNSDLGVVFDINPQTQT 290

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L +  D+ + G + E   V+     +    NY+++ E   + ++ + +  E+V
Sbjct: 291 LTLKADSVEYGTSQEEFAVHIEGASVQFSMNYQFITECTKSCTNKDEITFEIV 343


>gi|116074276|ref|ZP_01471538.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916]
 gi|116069581|gb|EAU75333.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916]
          Length = 390

 Score =  109 bits (272), Expect = 9e-22,   Method: Compositional matrix adjust.
 Identities = 85/361 (23%), Positives = 173/361 (47%), Gaps = 22/361 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  +  
Sbjct: 1   MKLVCSQSELNSALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G++T+ A LL +IV +L   + I+   ++    +V ++    ++ +++ P  EF
Sbjct: 61  ASVEASGAVTLPARLLGEIVSRLSADSPITLATDDA-SEQVELTSLSGSYQMRAMPADEF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   +  + ++ L   +  T FA + +E +  L G+       +L+  A +TDG
Sbjct: 120 PDLPLVENGTALRVEAASLVQALRGTLFASSADEAKQLLTGVHLRFQARNLE--AASTDG 177

Query: 179 HRLAVAEVDIVAQ--IAKMP-----------SIIVPRKAVGEILRILSSKDSSVKVSLSE 225
           HRLAV  V    Q   +  P           ++ +P +++ E+ R+++       V+L  
Sbjct: 178 HRLAVLAVKDALQDDPSGAPDADTTTEDGVLAVTLPARSLREVERLIAGWKGDDPVTLFY 237

Query: 226 SRIHLNIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            R  + + +    V  R ++G +PNY+ +IP    + + +       A++RV++++    
Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDGFTRTIDLERRPFMAALERVAVLADQHN 297

Query: 284 QAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             V++S   ++  + ++ D  D+G   ES+        M I FN +Y+L+ +  + +D +
Sbjct: 298 NVVRISTEPTAGLVQISADAQDVGSGSESLPATLVGDAMQIAFNVRYVLDGLKAMEADRI 357

Query: 342 V 342
           V
Sbjct: 358 V 358


>gi|301054217|ref|YP_003792428.1| DNA polymerase III subunit beta [Bacillus anthracis CI]
 gi|300376386|gb|ADK05290.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis
           str. CI]
          Length = 376

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I  G+    L  
Sbjct: 61  IDDEQITTILQVGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E  ++I F+ ++++E +  I  + +
Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIKEETI 345


>gi|254773055|ref|ZP_05214571.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 399

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 97/401 (24%), Positives = 177/401 (44%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A 
Sbjct: 13  LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DIVR L +   I F+ +   G  V ++ G + F L +    ++P+
Sbjct: 73  IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 128

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  EE   +  L + +    + +   A   ++    L GI   I+ + + L   ATD 
Sbjct: 129 LPTLPEE---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230
            RLAV E+   A    +  +++VP K + E  R      S V++SL        +  + +
Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAART-GIDGSDVRLSLGAGAGVGKDGLLGI 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           +      + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  
Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +   L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F  
Sbjct: 302 TEGSLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGF 356

Query: 351 DSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385
            +      +R   D DS  +     +A      Y+LMP+R+
Sbjct: 357 TTPGKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397


>gi|313681132|ref|YP_004058870.1| DNA polymerase iii, beta subunit [Sulfuricurvum kujiense DSM 16994]
 gi|313153992|gb|ADR32670.1| DNA polymerase III, beta subunit [Sulfuricurvum kujiense DSM 16994]
          Length = 355

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/374 (26%), Positives = 187/374 (50%), Gaps = 34/374 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MKITV++S +  +L H    +E+K+T  ++ H+LL  +   L  KA+  EI  I      
Sbjct: 1   MKITVDKSVLENILLHLQPFLEKKDTSQITSHILLSTDGRTLYAKATDYEIGLIIQTNSV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPES 116
           +V+  GS+T +   L DI+R L+D       +E EL  +   ++I    SNF L ++  S
Sbjct: 61  NVEEPGSLTANGKKLLDIIRILKD-------EEIELTLDKDTLHIRQKRSNFKLPTYKSS 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP+    +   +  + S +L   +++   A  T   ++ LNG    I    +    V+T
Sbjct: 114 EFPAFPTTDGKPNIAINSHLLIESLKKITPAADTNNPKFELNGALIDIKNNQINF--VST 171

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  RLA+  +D  +Q     SIIVP+KA+ EI ++ +    ++++    + + +  E   
Sbjct: 172 DTRRLALVHID--SQNDHELSIIVPKKAIIEIQKLFA---DNIEIFYDNTHLVIKSEDSL 226

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL- 295
              +LI+G+FP+Y  +IP    + + +  + +  A+ +++ +S+     +KL+  SD + 
Sbjct: 227 FYTKLINGKFPDYSRIIPKEAQRTIVLPKSVIVTAIKQITTISN----DLKLTFQSDSIL 282

Query: 296 --CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              ++ DN +    +E  N +  E P  +  N +Y+L+ +  +++ E       F L+++
Sbjct: 283 FESLSDDNIEAKTTVEIENGF--ESPFILAINSRYILDFLSQVNATE-------FTLEAN 333

Query: 354 NSSVFIRGKDKDSK 367
            S+     KD++ K
Sbjct: 334 ESNQPFVLKDQNFK 347


>gi|309388283|gb|ADO76163.1| DNA polymerase III, beta subunit [Halanaerobium praevalens DSM
           2228]
          Length = 370

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 173/344 (50%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + ++ + L    R + +  T+P+   + L  ++ +L +K++  E+ I   +   
Sbjct: 1   MKFSINQKELYKALNIVRRAVAKNQTLPILTGIFLSLDNNILTLKSTDLELGIKYDLKVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             V GSI + A    +I+R+L +   +I   K+     ++ I   +S F +  F   EFP
Sbjct: 61  GQVNGSIVLPATQFLNIIRELPNQKIEIDLNKDK---WQLEIKCLNSLFKINGFDPDEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E   +F L +   K ++++   + + +E +  L G FF +  E +K+  V+T+ +
Sbjct: 118 NLPKVEDSANFSLPAKKFKEMIKKVRISTSKDETQPALTGAFFEVETEKVKM--VSTNTY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  E  +   +A+  ++I+P   + E+  +L + D SV++ +  +        + +  
Sbjct: 176 RLSYIEAPLKTSVAEKIAVILPGSTLQELNNLLEA-DESVEIEVDNNYARFTFAGIEVIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ VIP  ++ +   + + L  AV R S+++ +    + L L+ D L M +
Sbjct: 235 RLIEGKFPNYELVIPDESNSKFSADLSQLHGAVKRASLIAKLDANIITL-LAEDGL-MEI 292

Query: 300 DNPD--MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ +   G A E + +        I  +  Y ++++  + ++E+
Sbjct: 293 NSAEGSSGYAHEELKIEIEGPKQKINIDAGYFIDVLKVLDAEEI 336


>gi|301300475|ref|ZP_07206674.1| DNA polymerase III, beta subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851922|gb|EFK79607.1| DNA polymerase III, beta subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 379

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 175/353 (49%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R+  ++ L    R I  K TI +   + +  +   L +  S  +I I   I  +
Sbjct: 1   MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60

Query: 61  VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            D         G++ + A    +IV+KL +  Q    + NE   +  I+ G + F +   
Sbjct: 61  DDNAALQIEQEGAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P   E +      +   +LK ++ +T  A++ +E R  L GI  H+  ++ +L A
Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + 
Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL-- 290
           + S   RL++G++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL++  
Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342
           S   + ++ + P++G   E ++    E   ++I FN  Y+ + + +    E+ 
Sbjct: 296 SVQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 348


>gi|229167522|ref|ZP_04295260.1| DNA polymerase III, beta subunit [Bacillus cereus AH621]
 gi|228616084|gb|EEK73171.1| DNA polymerase III, beta subunit [Bacillus cereus AH621]
          Length = 376

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 182/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I+   L +C
Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVIDHNKL-IC 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           A ATD HRLA+ E+ I +  AK+ + IVP   + E+L++++S  + V + LSES I    
Sbjct: 176 A-ATDSHRLALREIPISSH-AKL-NCIVPSSTISELLKLMNSNANLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  +   + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|319949430|ref|ZP_08023491.1| DNA polymerase III subunit beta [Dietzia cinnamea P4]
 gi|319436892|gb|EFV91951.1| DNA polymerase III subunit beta [Dietzia cinnamea P4]
          Length = 391

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 106/410 (25%), Positives = 182/410 (44%), Gaps = 46/410 (11%)

Query: 1   MKIT-----VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55
           M+IT     V R D  + +    R +  + ++P+   VLL+A+ GL     SG + E + 
Sbjct: 1   MEITDPTFRVTREDFADSVAWVARTLPSRPSVPILGGVLLEADSGL---TISGFDYETSA 57

Query: 56  --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYL 110
             ++PA V   GS  VS  LL DI R L D       +  E+     ++ I+ G + F L
Sbjct: 58  QVSVPAEVSEPGSTLVSGRLLADIARALPD-------RPVEVVVTAQKMYITCGSAKFTL 110

Query: 111 QSFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
            + P  ++P      E   S E+        V +   A   ++    L GI   I  E  
Sbjct: 111 PTMPVEDYPQLPAMPEVTGSAEV--DAFSEAVGQVVVAAGKDDTLPMLTGIRMEI--EGT 166

Query: 170 KLCAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----- 223
           ++  +ATD  RLA+ E D   A+      +++P KA+ E+ R  +     V +SL     
Sbjct: 167 RVTLIATDRFRLAIREFDWEPAREDVTVEVLIPAKALSEVTRS-AGHGGRVDLSLGAGSN 225

Query: 224 --SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
             +E  + + +     + RL+D EFP  + ++P  +     V    L QA+ RV++++  
Sbjct: 226 VGAEGILGVLVSGQRTTTRLLDAEFPKVRQLLPPQHTSVAVVEVDALVQAIKRVALVADR 285

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +Q V+++ S  +L ++    D  +A ES+ V +   P+ I FN  YLL+ + +I S   
Sbjct: 286 GVQ-VRMAFSEGELALSAGGDDAAQANESLPVDFVGEPLTIAFNPGYLLDGLGSIHS--- 341

Query: 342 VDDEVVFRLDSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385
               V F     +    +R   +   +   D  +        Y+LMP+R+
Sbjct: 342 --ARVAFGFTQPSRPAVLRPAPEALPEPGADGAIAPVESDHTYLLMPVRL 389


>gi|126432615|ref|YP_001068306.1| DNA polymerase III subunit beta [Mycobacterium sp. JLS]
 gi|126232415|gb|ABN95815.1| DNA polymerase III, beta subunit [Mycobacterium sp. JLS]
          Length = 398

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 182/403 (45%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R D  + +    R +  + T+PV   VLL  +D  L I  SG + E++  +  +
Sbjct: 13  LKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTI--SGFDYEVSAEVRVA 70

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            ++   GS+ VS  LL DI + L     +    E   GT V+++ G + F L +    ++
Sbjct: 71  AEIASPGSVLVSGRLLSDITKALP-AKPVDVSVE---GTRVSLTCGSARFSLPTMAVEDY 126

Query: 119 ---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              P+  +E  V   +L        + +   A   ++    L GI   I  E + L   A
Sbjct: 127 PALPTLPDETGVIGADL----FAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVLA--A 180

Query: 176 TDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESR 227
           TD  RLAV E+        +  +++VP K + E  +   +  + V ++L        E  
Sbjct: 181 TDRFRLAVRELTWSTSSPDVEAAVLVPAKTLAEAAKA-GTDGTDVHLALGAGSAVGKEGL 239

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           + +  E    + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V+
Sbjct: 240 LGIRSEGKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVAD-RGAQVR 298

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +  + D L ++    D+G+A E + V ++  P+ I FN  YL + + ++ S     + V 
Sbjct: 299 MEFADDVLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVT 353

Query: 348 FRLDSSNSSVFIR-GKDKDSKNNKDN----KVNAFYVLMPMRI 385
           F   + +    +R   D+D+          + +  Y+LMP+R+
Sbjct: 354 FGFTTPSRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396


>gi|313671972|ref|YP_004050083.1| DNA polymerase iii, beta subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938728|gb|ADR17920.1| DNA polymerase III, beta subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 368

 Score =  108 bits (271), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 87/360 (24%), Positives = 176/360 (48%), Gaps = 12/360 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++++  +L +A   I  KNT  +  ++ + A +G +  K +         +   
Sbjct: 1   MKFKIIKNEVFYILQNAVNFISIKNTNTILQNIYISAENGKVVFKTNSILSGFCAEVDLD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++ G+ TV    L+DIV++  D A I FF +   G+ + IS G +NF L +     FP+
Sbjct: 61  VEMEGTTTVICKKLFDIVKEFSDSAIIEFFFD---GSRLKISSGQANFSLATMSPELFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    YS ++ SS L + +++T F +AT   +    G+   +    L+L   ++D  R
Sbjct: 118 MSDITPEYSLKIDSSQLADALDKTLFCVATNATKIEFTGLHLKVYGNKLELH--SSDFQR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           ++ A + +  + +    I +P+K   +IL++L  + ++V++     +  L   ++ +  R
Sbjct: 176 ISSAVITLPEEQSDEFIINIPKKTASDILKVL-DRTATVEIYTDLKQFMLVAGNIKIYSR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+    +   +       E+ V+  +L   + +V  +S+    A+ LSLSSD++ +   
Sbjct: 235 LIEKAVKSINTLFSSETPIEVVVDKNSLSDNIRKVLPISTEITHAIVLSLSSDQITVYTL 294

Query: 301 NPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             + G+  + +N + +   P+D+  N K LLEI+ +I       + V+ +L    + VFI
Sbjct: 295 ETEYGQGFDKLNPIKFTGDPIDVILNGKLLLEILSHIDC-----NNVILKLSGRRNPVFI 349


>gi|94993398|ref|YP_601496.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10750]
 gi|94546906|gb|ABF36952.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10750]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  ++ L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIQALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|227514120|ref|ZP_03944169.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227087491|gb|EEI22803.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 379

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 173/353 (49%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT------ 54
           MK T+ R+  +  L +  R +  K+TIP+   + L  ++  + +  S  +I I       
Sbjct: 1   MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60

Query: 55  -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            G    +V+  G+I + A    DIV+KL D  Q++    +  G +  I  G + F +   
Sbjct: 61  DGQYQLTVEEPGAIVLPARFFSDIVKKLPD-QQVTIAVTD--GFQAQIMSGTAEFVINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   SFE+A+ +  +++ +T  A++ +E R  L GI  H++  D  L A
Sbjct: 118 DANNYPHLPEIETAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +     +   +++P  ++ E+ R++      VK+ +++++      
Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           +     RL++G +P+   +IP +++  + ++ +    A++R S++S   R   VKL++  
Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295

Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
                 V  ++ D+G   E++     E   ++I FN  ++ + + +    +++
Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAKII 348


>gi|306834601|ref|ZP_07467713.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis
           ATCC 700338]
 gi|304423237|gb|EFM26391.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis
           ATCC 700338]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 180/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ +S  L+ L    R I  KN IPV   + ++  +  + +  S  +I I   IP S
Sbjct: 2   IKFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A+   +IV  L D   ++  F+E E   ++ ++ G S   L+ 
Sbjct: 62  NENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIE-HHQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
                +P  +E        L + +LK+++  T FA + +E R  L G+   +++ +D K 
Sbjct: 118 KDVDLYPRLQEMATENPLVLETKLLKSIIAETAFAASLQESRPILTGVHMVLSDHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ +    +   ++++P K++ E   + +    +V+V  S+S++   
Sbjct: 177 -AVATDSHRMSQRKLTL-ENTSNDFNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S + +   VKL +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++ +   V++P++GK  E ++ +  +   + I FN  YL+E +  + S+ VV
Sbjct: 295 ANNSVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKSETVV 347


>gi|94989511|ref|YP_597611.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10270]
 gi|94543019|gb|ABF33067.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10270]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLENTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|312864131|ref|ZP_07724366.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396]
 gi|311100363|gb|EFQ58571.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396]
          Length = 378

 Score =  108 bits (270), Expect = 1e-21,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A+   ++V  L D      F+E E   +V +  G S   L+  
Sbjct: 62  EENAGLLITRPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F + N +DLK  
Sbjct: 119 DVEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   +    +++P +++ E+  + S    ++++  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+     +LR A++R  ++S S +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNSSQSGTVKLEII 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKSETV 346


>gi|56808864|ref|ZP_00366575.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Streptococcus pyogenes M49 591]
 gi|71902669|ref|YP_279472.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS6180]
 gi|94987633|ref|YP_595734.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS9429]
 gi|94991499|ref|YP_599598.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS2096]
 gi|209558589|ref|YP_002285061.1| DNA polymerase III subunit beta [Streptococcus pyogenes NZ131]
 gi|71801764|gb|AAX71117.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS6180]
 gi|94541141|gb|ABF31190.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS9429]
 gi|94545007|gb|ABF35054.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS2096]
 gi|209539790|gb|ACI60366.1| Beta subunit of DNA polymerase III [Streptococcus pyogenes NZ131]
          Length = 378

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|288904225|ref|YP_003429446.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306832485|ref|ZP_07465637.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977202|ref|YP_004286918.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730950|emb|CBI12494.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304425385|gb|EFM28505.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177130|emb|CBZ47174.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 378

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 180/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ +S  L+ L    R I  KN IPV   + ++  +  + +  S  +I I   IP S
Sbjct: 2   IKFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A+   +IV  L D   ++  F+E E   ++ ++ G S   L+ 
Sbjct: 62  NENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIE-HHQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
                +P  +E        L + +LK+++  T FA + +E R  L G+   +++ +D K 
Sbjct: 118 KDVDLYPRLQEMATENPLVLETKLLKSIIAETAFAASIQESRPILTGVHMVLSDHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ +    +   ++++P K++ E   + +    +V+V  S+S++   
Sbjct: 177 -AVATDSHRMSQRKLTL-ENTSNDFNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S + +   VKL +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++ +   V++P++GK  E ++ +  +   + I FN  YL+E +  + S+ VV
Sbjct: 295 ANNSVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKSETVV 347


>gi|161723112|ref|YP_288065.2| DNA polymerase III subunit beta [Thermobifida fusca YX]
          Length = 380

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 100/396 (25%), Positives = 180/396 (45%), Gaps = 29/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK  VER  + + +    R +  + ++PV   +LL A+D  G   +  S  + E++  + 
Sbjct: 1   MKFRVERDVLADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVS 60

Query: 59  ASVDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             VD+   G I VS  LL +IVR L         + +  G +V +S G + F + + P  
Sbjct: 61  VDVDIDEPGRILVSGKLLAEIVRNLPP----QTVEVSTDGAKVVVSCGSAKFTILTLPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P T       +  + S      V +   A   ++    L G+   I    + L  V+T
Sbjct: 117 DYP-TLPAMPALTGSVLSDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIH 229
           D +RLAV E+    +   + ++ +VP K + +  + L+   + + ++LS      E  I 
Sbjct: 174 DRYRLAVRELTWTPEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIG 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                   + RL++GEFP Y+ ++P S +    V      +AV RVS+++  R   ++LS
Sbjct: 233 FEGGGRRTTTRLLEGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVAE-RNTPLRLS 291

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +SD+L +     +  +A+E ++       + I FN  +LL+ ++ I S     D    +
Sbjct: 292 FTSDRLVLEAGTGEEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIES-----DVAHLQ 346

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +S     I GK  D     D +    Y++MP+RI
Sbjct: 347 FTTSTKPAIITGKPADDGTASDYR----YLIMPVRI 378


>gi|118465865|ref|YP_879305.1| DNA polymerase III subunit beta [Mycobacterium avium 104]
 gi|118167152|gb|ABK68049.1| DNA polymerase III, beta subunit [Mycobacterium avium 104]
          Length = 382

 Score =  108 bits (270), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/395 (24%), Positives = 174/395 (44%), Gaps = 32/395 (8%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66
           R    + +    + +  +  +PV   VLL   D  L I     E+     + A +   GS
Sbjct: 2   RESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEIASPGS 61

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEE 124
           + VS  LL DIVR L +   I F+ +   G  V ++ G + F L +    ++P+  T  E
Sbjct: 62  VLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPTLPTLPE 117

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E   +  L + +    + +   A   ++    L GI   I+ + + L   ATD  RLAV 
Sbjct: 118 E---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDRFRLAVR 172

Query: 185 EVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLS 236
           E+   A    +  +++VP K + E  R      S V++SL        +  + ++     
Sbjct: 173 ELTWSAASPDIEAAVLVPAKTLAEAART-GIDGSDVRLSLGAGAGVGKDGLLGISGNGKR 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  S   L 
Sbjct: 232 STTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEFSEGSLR 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   +    
Sbjct: 291 LSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTPGKP 345

Query: 357 VFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385
             +R   D DS  +     +A      Y+LMP+R+
Sbjct: 346 ALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 380


>gi|15674252|ref|NP_268425.1| DNA polymerase III subunit beta [Streptococcus pyogenes M1 GAS]
 gi|71909816|ref|YP_281366.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS5005]
 gi|13621327|gb|AAK33147.1| beta subunit of DNA polymerase III [Streptococcus pyogenes M1 GAS]
 gi|71852598|gb|AAZ50621.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS5005]
          Length = 378

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|219846975|ref|YP_002461408.1| DNA polymerase III subunit beta [Chloroflexus aggregans DSM 9485]
 gi|219541234|gb|ACL22972.1| DNA polymerase III, beta subunit [Chloroflexus aggregans DSM 9485]
          Length = 378

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 173/395 (43%), Gaps = 32/395 (8%)

Query: 1   MKITVERSDI---LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI 57
           MK+T  + D+   L  + HA  +  +  T+PV  +VLL  ++G L++ A+  E+ I   I
Sbjct: 1   MKLTCMQDDLKRGLAAISHA--VAGKSATLPVLANVLLATDNGRLKLTATNLEVGINRWI 58

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            A++   G++ V A LL D+V  L +               V      SN  ++     E
Sbjct: 59  GANIAQAGAVAVPAKLLADVVGGLPNDTVTLTLDPKTQTLRVECGRFVSN--IKGVDADE 116

Query: 118 FPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FPS            L + + +  +E+  FA AT+E R  L G+   +   D +L  VA 
Sbjct: 117 FPSLPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVL--VRTRDRQLTLVAA 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--NIES 234
           DG RLA+  + +   +A     ++P + + E+ RI+   +  V +  +    H+  + E+
Sbjct: 175 DGFRLAMRTIPLAETVAHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTEN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS----- 289
             +  RLI+G FP+++ +IP        ++ T L +AV   S  +S     VKL      
Sbjct: 235 TEVVSRLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAG 294

Query: 290 -LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +   ++ ++ ++ ++G     ++         I  N K+L + I  + S     +++ F
Sbjct: 295 EMGPGRIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGS-----NQIAF 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            + S+ S    +    D            +++MPM
Sbjct: 350 EMQSAQSPAVFKPVGHDGY---------IHIVMPM 375


>gi|50913348|ref|YP_059320.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10394]
 gi|139472890|ref|YP_001127605.1| DNA polymerase III subunit beta [Streptococcus pyogenes str.
           Manfredo]
 gi|50902422|gb|AAT86137.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS10394]
 gi|134271136|emb|CAM29346.1| DNA polymerase III, beta chain [Streptococcus pyogenes str.
           Manfredo]
          Length = 378

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|326802616|ref|YP_004320434.1| DNA polymerase III, beta subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651483|gb|AEA01666.1| DNA polymerase III, beta subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 383

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 197/396 (49%), Gaps = 29/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T++RS  ++ L +  R I  + TIP+   + +   D  + +  S   I I   I   
Sbjct: 1   MKFTIKRSIFVDHLNNVQRAISSRTTIPILTGIKIAVLDSGIILTGSDSTISIEIYISKE 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 S+   GSI + +  L DIV+KL +  Q++   ++ L T   I  G+S F L   
Sbjct: 61  DESNQLSIAETGSIVLPSRFLGDIVKKLPED-QLTLEVQDNLQTV--IRSGESVFNLNGT 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             SE+P+  E +   ++ L   + K +V  T  +++ ++IR    G+ F + +E LK  A
Sbjct: 118 AGSEYPTLPEIDADSTYVLPGHLFKRVVNHTIISVSNQQIRPLFTGVHFILADEQLK--A 175

Query: 174 VATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           V+TD HRL+   V +        K   I +P + + E+ R++   +  +++ ++++++  
Sbjct: 176 VSTDSHRLSQRIVPLTMPEESQGKALEINIPGQTLTELTRLVDDNE-DIEMMVTDNQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
            I+++ +  RL++G +P+   ++    + +++V+   L  AV+R  I+S   +   VKLS
Sbjct: 235 KIDNVYLYSRLLEGNYPDTDRLLSLDYNTKIKVDAQELVHAVERALILSHQGKNNVVKLS 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           LS ++  ++  + ++G   E +++   E   ++I FN  YL E + +    +V    V+ 
Sbjct: 295 LSQEEAILSGHSSEIGYVKEKLSLLSFEGDDLEISFNPDYLREALRSFGGQDV----VIR 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            ++ ++S +    +D+D       + N   ++ P+R
Sbjct: 351 FVNPTHSFILTPSEDED-------EFNMVQLITPIR 379


>gi|171778196|ref|ZP_02919425.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283020|gb|EDT48444.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 378

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 180/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ +S  L+ L    R I  KN IPV   + ++  +  + +  S  +I I   IP S
Sbjct: 2   IKFSINKSFFLQALNATKRAISSKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A+   +IV  L D   ++  F+E E   ++ ++ G S   L+ 
Sbjct: 62  NENAGLLITSSGAVLLEANFFINIVSSLPD---VTLDFEEIE-HHQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
                +P  +E        + + +LK+++  T FA + +E R  L G+   +++ +D K 
Sbjct: 118 KDVDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ +    +   ++++P K++ E   + +    +V+V  S+S++   
Sbjct: 177 -AVATDSHRMSQRKLTL-DNTSNDFNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++  S + E+  N   LR A++R  ++S + +   VK+ +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNSFETEVTFNTGALRSAMERAHLISNATQNGTVKVEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++ +   V++P++GK  E +++   +   + I FN  YL+E +  + S+ VV
Sbjct: 295 TNNSISAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKSETVV 347


>gi|87308269|ref|ZP_01090410.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645]
 gi|87288826|gb|EAQ80719.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645]
          Length = 372

 Score =  108 bits (269), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 189/396 (47%), Gaps = 41/396 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKAS----GPEIEITGA 56
           MKIT +R    +    A  +   ++  P+  ++ L A +    + A+    G  IE++G 
Sbjct: 1   MKITFDREQFQQAFQTAAAVAPSRSPKPILQNIKLDATESGAIMMATDMEVGVRIEVSGV 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-SNFYLQSFPE 115
               V+  GSI +       I+R++ D  ++   +E E GT   I  G+ S F L +   
Sbjct: 61  ---EVEAPGSIVLPVQRFGSILREVSD-EKLRITRE-EGGT---IVQGERSKFTLSTENP 112

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP+          EL++  LK L+ RT FA  +E  RY L GI   +  +  ++ AVA
Sbjct: 113 EEFPAVHSFTETKYHELSARTLKELIRRTLFAADSESGRYALGGILLEMEAD--QVTAVA 170

Query: 176 TDGHRLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           TDG RL+      VA      A     IVP +A+  I + L++ +++V+++   + + + 
Sbjct: 171 TDGRRLSKMSGPAVAIEGHGSASEVMTIVPARAMQLIEKALTNLEATVQIAARSNDVLVK 230

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           + + ++  RL++G FP +++V+P   D K + +       A+ + +I++S   + +  + 
Sbjct: 231 VGAATIYARLVEGRFPKWRDVLPEKRDAKAIELTVGPAFAALRQAAIVASDESRGIDFTF 290

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
                 ++    ++G++     + Y+  P++I  +++Y+ +        +V+D E  F L
Sbjct: 291 GGGSAVLSSTTAEVGQSHVEFPIAYDGDPVEITMDHRYVADFY------KVLDGERQFTL 344

Query: 351 ---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
              D+ ++++F       + +N D      YV+MP+
Sbjct: 345 NLQDADSAALF------STDDNYD------YVVMPL 368


>gi|304405888|ref|ZP_07387546.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304345131|gb|EFM10967.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 380

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 190/400 (47%), Gaps = 39/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK+++ ++++ + +    +    +  IP+   +        + + AS  +I I   IP  
Sbjct: 1   MKLSIAKNELNDAIQQVAKAASTRPAIPILGGIKFDVTHQGITLTASDTDISIQSFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTE--VNISHGDSNFY 109
                 A VD  GS+ + +  + +IV+KL  D  +I      E+G +    I  G ++  
Sbjct: 61  SGDSIVAKVDKPGSVVLPSKFIVEIVKKLPSDEVEI------EVGEQFITMIRSGSTDIQ 114

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
           +      EFP     E     ++   +LK+L+ +T FA +T E    L G   ++ E +L
Sbjct: 115 MVGLDPEEFPVLPSIEQSDVLQIPGDLLKSLIRQTVFAASTSEQTPILTGALVNLFEGEL 174

Query: 170 KLCAVATDGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           +   VATD HRLA   A VD +  + +  ++++  K + E+ R++    + V++ +++++
Sbjct: 175 RF--VATDRHRLANRSAHVDTLPSL-RFSNVVISAKTLNELSRLIPDASALVEMVVADNQ 231

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
               I S+    RL+DG +P+   +IP S   EL V+   L  A+DR  +MS   +   V
Sbjct: 232 ALFKIGSVLFYSRLLDGTYPDTSKIIPQSYKTELVVDTKKLTDAIDRAYLMSREEKTNIV 291

Query: 287 KL-SLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDD 344
           +L +L    + ++  + ++G+  E +  +  E   + I FN KY+L+++  I S     +
Sbjct: 292 RLITLEHGGIEISSSSSELGRVTEQLEAFKMEGEALRIAFNSKYMLDVLKVIDS-----E 346

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++  +   + S + IR  D           ++ Y+++P R
Sbjct: 347 QLNIQFTGAMSPIIIRPADHP---------HSTYIILPYR 377


>gi|19745203|ref|NP_606339.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS8232]
 gi|19747292|gb|AAL96838.1| beta subunit of DNA polymerase III [Streptococcus pyogenes
           MGAS8232]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIKVTPTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|322515791|ref|ZP_08068736.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322125753|gb|EFX97071.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 179/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A+   ++V  L D      F+E E   +V +  G S   L+  
Sbjct: 62  EENAGLLITRPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F + N +DLK  
Sbjct: 119 DVEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   +    +++P +++ E+  + S    ++++  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEII 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKSETV 346


>gi|72160490|ref|YP_288147.1| DNA polymerase III subunit beta [Thermobifida fusca YX]
 gi|71914222|gb|AAZ54124.1| DNA polymerase III beta subunit family protein [Thermobifida fusca
           YX]
          Length = 379

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 95/397 (23%), Positives = 179/397 (45%), Gaps = 31/397 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLE-IKASGPEIEITGAIPA 59
           MK  V+R    + +    R +  +  +PV   + L+  D   + ++ SG + E++    A
Sbjct: 1   MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQ--A 58

Query: 60  SVDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           SVDV     GS+ V   LL +IVR L     + F  E   G+   ++ G++ F L + P 
Sbjct: 59  SVDVHAEEAGSVLVPGRLLAEIVRTLPP-HPVEFHVE---GSRALLTCGNARFTLLTLPL 114

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P+             + V    V +   + + ++    L G+  H+      +   A
Sbjct: 115 EDYPTLPAMPRTIG-SAPADVFATAVRQVLPSTSRDDTLPMLTGV--HLTFRGDTILLAA 171

Query: 176 TDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR------I 228
           TD +R+AV E+    +   +  S +VP + +G+  R L+  +  + +S S+SR      I
Sbjct: 172 TDRYRIAVREMWWKPEEVDIDTSALVPARTLGDFSRSLTGGNVDIALSTSDSRGAGEGMI 231

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
               +    + RLID +F +Y++  P     +  V    L +AV RV++++  R   V+L
Sbjct: 232 GFEHDGKRTTTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVAD-RSTPVRL 290

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           S +S ++ +   + D  +A+E++ V +   PM I FN +Y L+ + N+ +     +    
Sbjct: 291 SFTSSEVVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVET-----ERAFL 345

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  +      I G         D +    Y++MP+R+
Sbjct: 346 RFVAPTRPAVITGTPAKEGGKPDFR----YLVMPLRL 378


>gi|330883328|gb|EGH17477.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 206

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 56/162 (34%), Positives = 97/162 (59%), Gaps = 2/162 (1%)

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214
           YYLNG+   ++   L+  AVATDGHRLA+  +    + A    +IVPRK + E+ R+L+ 
Sbjct: 45  YYLNGMLLEVSAGILR--AVATDGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTE 102

Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
           +D  V + L +  I       + + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R
Sbjct: 103 QDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSR 162

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            +I+S+ + + ++L L+S +L +  +NP+  +A E ++V YN
Sbjct: 163 TAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYN 204


>gi|111219508|ref|YP_710302.1| DNA polymerase III subunit beta [Frankia alni ACN14a]
 gi|111147040|emb|CAJ58687.1| DNA polymerase III, beta chain [Frankia alni ACN14a]
          Length = 413

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 102/409 (24%), Positives = 181/409 (44%), Gaps = 43/409 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER +  E +    R +  + T  + V   +LL A   +L++ A   E+   G + 
Sbjct: 22  MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  LL +I R L   A +    +   GT + I+ G++ F L   P  ++
Sbjct: 82  ATVSEEGRALVNGKLLAEITRALP-AAPVDLGID---GTRLVITCGNARFALPMLPVDDY 137

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      V +  +  S     V +   A   ++    L G+   I  + L L A  TD 
Sbjct: 138 PALPAMPPV-TGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAA--TDR 194

Query: 179 HRLAV-----------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--- 224
           +RLAV            E D  A +      +VP + + +  + LS     V ++L    
Sbjct: 195 YRLAVRSLKWRPDDSAGEGDAAAPVTVA---LVPARTLLDTAKSLSGSGVEVSIALGTGP 251

Query: 225 --ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
             E+       +   + RL++G+FP ++ ++P S+    ++    L++AV RV+++++ +
Sbjct: 252 SGETLAGFAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVAA-K 310

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV- 341
              V+LS S D L +        +A E++ V Y+   + + FN  YLL+ +  + SD V 
Sbjct: 311 TAPVQLSFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVR 370

Query: 342 -----VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +D  V    ++N    + GK  D     D +    Y+LMP+R+
Sbjct: 371 IGFASAEDPAV----AANKPAILTGKADDDGEVPDYR----YLLMPIRL 411


>gi|16885215|gb|AAF98349.2| DNA polymerase III beta subunit [Streptococcus pyogenes]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 173/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A +  +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADL-MVVLPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|228476802|ref|ZP_04061450.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126]
 gi|228251539|gb|EEK10676.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126]
          Length = 378

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I  S
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A+   ++V  L D      F+E E   +V +  G S   L+  
Sbjct: 62  EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F + N +DLK  
Sbjct: 119 DVEQYPRIQEVDSLTPLLMDTKVLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   A    +++P +++ E+  + S    +++V  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDDIENLEVFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEII 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGSVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKSETV 346


>gi|330718063|ref|ZP_08312663.1| DNA polymerase III, beta subunit [Leuconostoc fallax KCTC 3537]
          Length = 377

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 81/339 (23%), Positives = 166/339 (48%), Gaps = 17/339 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  ++ R + ++ L    R I  + TIP+  ++ ++ +D  L +  S  +I I   I  S
Sbjct: 1   MHFSINRQNFIKSLNAVSRAISSRTTIPILTNIKIEVSDTQLTLTGSNADISIQTRILDS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +I+++L        F+    G    I+ G S+F +   
Sbjct: 61  DTTAELIIKETGGITLPATFFSNIIKRLPADT----FELKLEGLRAAITSGASSFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E E   S  ++++ L +++ +T  + +T+E R  L G+ F +  + +K  +
Sbjct: 117 DIQNYPQLPEVEDAESLSVSAAQLTDIISQTIISASTQESRPILTGVHFQLTGDSVK--S 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +    A++ + +IVP K+  E+  +L  +D  V + L+ ++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGADAQVNADVIVPAKSFKELGAMLEGQDRVV-IKLTANQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
            + +   RL++G +P    +IP  +  EL +N   L  A+DR +++S   R   V+L++ 
Sbjct: 234 GNTTFYSRLLEGNYPETDRLIPTESTTELMINAMTLLGAIDRAALLSHESRNNVVQLTMK 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
            +   ++  + ++G+  E+++    E   ++I FN  Y+
Sbjct: 294 DNTAVLSGMSQEIGQVKEALDAKKVEGDDLEISFNPDYV 332


>gi|325294209|ref|YP_004280723.1| DNA polymerase III, beta subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064657|gb|ADY72664.1| DNA polymerase III, beta subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 365

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 105/399 (26%), Positives = 183/399 (45%), Gaps = 48/399 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +  ++I   +       +++  IP+  ++L +A D +L++ A+  EI ++  I   
Sbjct: 1   MKIRISSNNIKSAVKKVFSAADKRGNIPILSNILFEAEDNILKLTATNLEIGVSTFIDCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
           V   G  TV+A     +   L             +G E  +   DS   ++S   S F  
Sbjct: 61  VTESGKTTVNAQKCAKLFSSL-------------IGEEFEVETDDSKLIVKS-ANSRFSL 106

Query: 120 --------STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                      E    +  +L+SS +   +++  +A++ +E RY L G++F    +  K+
Sbjct: 107 ATLPPEEFPEIEFPESFGVKLSSSDIDRAIKKVSYAVSKDEARYILTGVYFRSFGD--KI 164

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATDGHRLA+ E+   A+  +  SII PRKA+ E+ ++L   D  +++   E++I   
Sbjct: 165 HAVATDGHRLALFEMK--AEAEEFSSII-PRKALSELKKLLKESD-EIELLGKENKIFFR 220

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSL 290
           I        +IDGE+P+Y  VIP  N  E       L  A+  VS++     I+AV L+L
Sbjct: 221 IGDTLFWSSVIDGEYPDYMAVIPEDNPLECIAIREELVNALKEVSVIYDKEEIRAVILNL 280

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +   L +     ++  A E    ++ V Y+    +I FN  +LLE + +        D +
Sbjct: 281 TPGNLRLIARKMELDSASEEAEVNIPVEYSGEEFEIGFNINHLLEAVSSFDG-----DTI 335

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +D   S V I  +++    N         V+MPM++
Sbjct: 336 KILMDQPISPVLIVSEEEPELKN---------VIMPMKV 365


>gi|190410684|ref|YP_001965254.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1]
 gi|84872699|gb|ABC67436.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1]
          Length = 372

 Score =  107 bits (268), Expect = 2e-21,   Method: Compositional matrix adjust.
 Identities = 90/387 (23%), Positives = 165/387 (42%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK+ ++ +D+   + +A R +  +   PV   +LL A  D  L I+A   E+     +PA
Sbjct: 1   MKLRIDHADLAAAVCYAARTLPSRPPAPVLAGLLLDATGDERLRIRAFDYEVSADTTVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G   V   LL DI   L+D   +        GT + +  G + F L   P  E+P
Sbjct: 61  AITTPGRALVPGRLLADITTTLRDDVHLDLD-----GTRLTLRAGSARFTLPLLPLEEYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E   V +  L++      V +   A++ EE    L GI    + E   L   ATD +
Sbjct: 116 TLPEPGDV-TGTLSAPAFAEAVAQVACAVSREEALPVLTGISLRHDHEASTLTLSATDRY 174

Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R AV  +    A +    ++I  R  +             + +        L  E  + +
Sbjct: 175 RYAVRTLPWKDAHLPDTGAVIPGRALLDAAKAAAGDATVDLVLPARSGLFALRGEQHTTT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLCM 297
           +R +DGE P Y ++ P        V    L+ AV RV+++S  +   ++++ + D  L +
Sbjct: 235 IRALDGELPKYASLFPTEFAHTATVEIDALKAAVQRVALVSPKKDGPIRMTFAGDGTLVL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              + D  +A+++++   +   + I FN  +LL+ +  +++     + V F   SS    
Sbjct: 295 ESGSGDDAQALDAVDTALDGAELTIAFNPAFLLDGLSALTA-----ESVRFDFTSSTKPA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + G   D +  +       Y+LMP+R
Sbjct: 350 VLSGHGSDDQALR-------YLLMPIR 369


>gi|322373977|ref|ZP_08048511.1| DNA polymerase III, beta subunit [Streptococcus sp. C150]
 gi|321276943|gb|EFX54014.1| DNA polymerase III, beta subunit [Streptococcus sp. C150]
          Length = 378

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 87/351 (24%), Positives = 177/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I  S
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSEGIYLTGSNGQISIENSISVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G+I + A+   ++V  L D      F+E E   +V +  G S   L+  
Sbjct: 62  EENAGLLITQSGTILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F + N  DLK  
Sbjct: 119 DVEQYPRIQEVDSLTPLMMNTKVLKSIISETSFAASTQESRPILTGVHFVLSNHNDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   A    +++P +++ E+  + S    +++V  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDDIDNLEVFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIV 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVQDVSGSDLIISFNPTYLIDALKALKSETV 346


>gi|86738726|ref|YP_479126.1| DNA polymerase III subunit beta [Frankia sp. CcI3]
 gi|86565588|gb|ABD09397.1| DNA polymerase III, beta subunit [Frankia sp. CcI3]
          Length = 402

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 102/416 (24%), Positives = 180/416 (43%), Gaps = 47/416 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER +  E +    R +  + T  + V   +LL A   +L+I A   E+     + 
Sbjct: 1   MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPILKIAAYDYEVAAQCTVH 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  LL +I R L   A +    +   GT + I+ G++ F L   P  ++
Sbjct: 61  ATVSEEGRGLVNGKLLAEITRALP-AAPVDLGID---GTRLVITCGNARFALPMLPVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      + +  +  S     V +   A   ++    L G+   I  + L L A  TD 
Sbjct: 117 PALPAMPPI-TGHIEGSAFAAAVSQVAIAAGRDDTLPVLTGVRIEIEGDTLTLAA--TDR 173

Query: 179 HRLAVAEV-------------DIVAQIAKMPSI-----IVPRKAVGEILRILSSKDSSVK 220
           +RLAV  +             D V  +   P       +VP + + +  + LS     V 
Sbjct: 174 YRLAVRTLKWRPSETAAGPDEDGVTGVDGPPPTPVTVALVPARTLLDTAKSLSGSGVEVS 233

Query: 221 VSLS-----ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
           ++L      E+       +   + RL+DG FP Y+ ++P S+    ++    L++AV RV
Sbjct: 234 IALGTGPSGETLAGFAGSTRQTTTRLLDGSFPPYRKLLPDSSPLIAQLEIAPLQEAVKRV 293

Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           +++++ +   V+L+ S D L +        +A E++ V Y+   + + FN  YLL+ +  
Sbjct: 294 ALVAA-KTAPVQLTFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGA 352

Query: 336 ISSDEV------VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + SD V       +D  V    ++N    + GK  D     D +    Y+LMP+R+
Sbjct: 353 LESDVVRIGFASAEDPAV----AANKPAILTGKADDDGEVPDYR----YLLMPIRL 400


>gi|313611865|gb|EFR86324.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 256

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 66/212 (31%), Positives = 124/212 (58%), Gaps = 9/212 (4%)

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
           +VLKN+V +T FA++  E+R  L G+ + I E   KL AVATD HRLA+ E+ +   I +
Sbjct: 15  NVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLSAVATDSHRLALREIPLETDIDE 72

Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             +I++P K++ E+ +IL     S++++L+ ++I   ++ L    RL++G +P+   +IP
Sbjct: 73  EYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLEGSYPDTSRLIP 132

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDNPDMGKAIESMN 312
                EL +N     QA+DR S+++   R   +KL +L + ++ ++ ++P++G   E  N
Sbjct: 133 TDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSPEVGNVSE--N 190

Query: 313 VY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           V+   +    + I FN KY+++ +     D++
Sbjct: 191 VFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 222


>gi|284028001|ref|YP_003377932.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836]
 gi|283807294|gb|ADB29133.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836]
          Length = 381

 Score =  107 bits (268), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/350 (25%), Positives = 161/350 (46%), Gaps = 22/350 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +  A R +  + ++P+   +L++A +G + +     E  +   +PA 
Sbjct: 1   MKFRVERDVLAESVAWAARSLPSRPSVPILAGLLVEAEEGQITLSGFDYETSVRVTVPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   +S  L+ DI + L +   +    +   G +  ++ G S F LQ+ P  E+P+
Sbjct: 61  VADTGKCLISGRLVADISKSLPN-QPVDIAVD---GAKAQVTCGSSRFTLQTLPTEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  + S V    V +   A   E+    L G+   I    + L  +ATD +R
Sbjct: 117 LPDLP-AASGTVRSDVFAQAVSQVVTAAGREDTLPVLTGVRVEIEGSTISL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E++   Q      + ++P + + E  + ++  D  + VSL+       I      V
Sbjct: 174 LAIRELEWNPQSPDASAAALIPARVLSETAKAMTGTD--IIVSLAAPGSGDGIVGFEGEV 231

Query: 240 ---------RLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                    RL+DGEFP  + +IP  +     +R++   L +AV RV++++  R   V+L
Sbjct: 232 SGGNRRATTRLLDGEFPKVRGIIPTDSAIATRVRLDTATLVEAVKRVALVAE-RNAPVRL 290

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           + S D + +   + D  +A ES+       P+ + FN  YLL+ ++ I +
Sbjct: 291 TFSEDSVTLDAGSGDEAQASESIEARVVGEPVTVGFNPTYLLDGLNAIGT 340


>gi|108796983|ref|YP_637180.1| DNA polymerase III subunit beta [Mycobacterium sp. MCS]
 gi|119866067|ref|YP_936019.1| DNA polymerase III subunit beta [Mycobacterium sp. KMS]
 gi|108767402|gb|ABG06124.1| DNA polymerase III, beta subunit [Mycobacterium sp. MCS]
 gi|119692156|gb|ABL89229.1| DNA polymerase III, beta subunit [Mycobacterium sp. KMS]
          Length = 398

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 177/401 (44%), Gaps = 33/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R D  + +    R +  + T+PV   VLL  +D  L I     E+     + A 
Sbjct: 13  LKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFDYEVSAEVRVVAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   GS+ VS  LL DI + L     +    E   GT V+++ G + F L +    ++  
Sbjct: 73  IASPGSVLVSGRLLSDITKALP-AKPVDVSVE---GTRVSLTCGSARFSLPTMAVEDYPA 128

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+  +E  V   +L        + +   A   ++    L GI   I  E + L   ATD
Sbjct: 129 LPTLPDETGVIGADL----FAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVLA--ATD 182

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIH 229
             RLAV E+        +  +++VP K + E  +   +  + V ++L        E  + 
Sbjct: 183 RFRLAVRELTWSTSSPDVEAAVLVPAKTLAEAAKA-GTDGTDVHLALGAGSAVGKEGLLG 241

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  E    + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++ 
Sbjct: 242 IRSEGKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVAD-RGAQVRME 300

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + D L ++    D+G+A E + V ++  P+ I FN  YL + + ++ S     + V F 
Sbjct: 301 FADDVLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVTFG 355

Query: 350 LDSSNSSVFIR-GKDKDSKNNKDN----KVNAFYVLMPMRI 385
             + +    +R   D+D+          + +  Y+LMP+R+
Sbjct: 356 FTTPSRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396


>gi|86606304|ref|YP_475067.1| DNA polymerase III subunit beta [Synechococcus sp. JA-3-3Ab]
 gi|86554846|gb|ABC99804.1| DNA polymerase III, beta subunit [Synechococcus sp. JA-3-3Ab]
          Length = 454

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/374 (24%), Positives = 177/374 (47%), Gaps = 38/374 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIPAS 60
            T E++++   L    R +  +  +PV  +VL++A+     +  +  ++   I     A 
Sbjct: 51  FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFEAE 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  T+ A LL DIV +L  G  I   +  E    V ++     + L+  P  E+P+
Sbjct: 111 VKGSGRTTLPAKLLSDIVSRLPSGP-IGLSQVPE-SAAVTLTSAAGQYQLRGMPAEEYPT 168

Query: 121 TKE-----------EEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
             E           EE + +   EL    L   + +T FA + ++ +  L G+   +   
Sbjct: 169 LPEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTG 228

Query: 168 DL-KLCAVATDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSKD--S 217
           D  +L   ATDGHRLA+ +V       D+ A   K+    +P + + E+ RIL ++   S
Sbjct: 229 DPPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKL-DFTIPARTLREVERILGAQTAAS 287

Query: 218 SVKVSLSESRIHLNIESLSMSV--------RLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           +V++    S++   +   + S         RL++G++P+Y  +IP   ++ + +    L 
Sbjct: 288 AVELRFDRSQVQFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPLI 347

Query: 270 QAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327
           ++++RV + ++ R + +K +LS  +  L ++ + PD+G   ES+ V  +   +++ FN +
Sbjct: 348 ESLERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNVR 407

Query: 328 YLLEIIDNISSDEV 341
           YLLE +    + +V
Sbjct: 408 YLLEALKVFHTQQV 421


>gi|282859399|ref|ZP_06268506.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010]
 gi|282587833|gb|EFB93031.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010]
          Length = 374

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 90/370 (24%), Positives = 175/370 (47%), Gaps = 21/370 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYD 76
            ++I  KN++ +    L +  +  L I AS  E  +   I   S +   S  V+   + D
Sbjct: 18  SKVIASKNSLAILDSFLFEIKNNQLTITASDSENTMHSTINLDSAEGETSFAVNNRTIID 77

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASS 135
            V++L +         +E    +   +G  NF +Q  P  EFP  +       +  + + 
Sbjct: 78  AVKELPEQPLSLDVNMDEQKIYITYQNGSYNFPIQ--PADEFPKVQPIAAGATTITIDAD 135

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
           +L   + R+ FA A +E+R  +NG++F ++ + L +  VA+DGH+L   ++  +   +  
Sbjct: 136 ILAENINRSLFATAQDELRPVMNGLYFDLSADSLAI--VASDGHKLVRNKIFTIK--SDT 191

Query: 196 PS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
           PS  I+P+K    +  +L+     V +   +    ++     +S RLI+G +PNY +VIP
Sbjct: 192 PSAFILPKKPANLLKNVLTKDGGDVVIRYDQRSAEISYAEGYLSCRLIEGRYPNYNSVIP 251

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNV 313
            +N  ++ ++  +L  A+ RVS  +S   Q ++  + + +L +  ++ D    A ES+  
Sbjct: 252 ETNPNQITIDRRSLIGAIRRVSPFASESSQLIRFHIENGQLTLNAEDIDFSTSAKESVIC 311

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
            Y    M I F    +LEI++N+  D++     +   D S + V + GK  +++      
Sbjct: 312 DYAGNAMSIGFKGASMLEILNNLEGDDI----TIQLADPSRAGVIVPGKQPENE------ 361

Query: 374 VNAFYVLMPM 383
            +   ++MPM
Sbjct: 362 -DVLMLIMPM 370


>gi|206973618|ref|ZP_03234536.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|206747774|gb|EDZ59163.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
          Length = 376

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 164/354 (46%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++SK   V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSKLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q +DR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGIDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++       N   +GK  E+  +     E   +I F+ +++L+ +  I  + V 
Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETVT 346


>gi|75761787|ref|ZP_00741722.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490720|gb|EAO54001.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 273

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 75/273 (27%), Positives = 139/273 (50%), Gaps = 18/273 (6%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD--------VCGSITVS 70
           + +  + TIP+   + + A +  + +  S  +I I   IP   D          GSI + 
Sbjct: 2   KAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEIAQSGSIVLQ 61

Query: 71  AHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
           A    +IV+KL +D  +IS   EN   T+  I  G S F L     +E+P   + E  + 
Sbjct: 62  AKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLNGLDSAEYPLLPQIEEHHV 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F++ + +LK+++ +T FA++T E R  L G+ + +   +L    +ATD HRLA+ +  I 
Sbjct: 118 FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSEL--TCIATDSHRLALRKAKIE 175

Query: 190 AQ-IAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
              IA     ++++P K++ E+ +IL   +  V + ++E ++    + L    RL++G +
Sbjct: 176 GHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNY 235

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           P+   +IP  +  ++ VN     QA+DR S+++
Sbjct: 236 PDTTRLIPAESKTDIFVNTKEFLQAIDRASLLA 268


>gi|312878754|ref|ZP_07738554.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260]
 gi|310782045|gb|EFQ22443.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260]
          Length = 382

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 91/372 (24%), Positives = 170/372 (45%), Gaps = 18/372 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-GAIPA 59
           MK+++E+S   +    A R +   + + V   +L++A++  +E+ A+  +  +T  A   
Sbjct: 1   MKLSIEKSQFTKSWSLAERSVGTSSALNVLSGILVRASESTVELLATDLKTSVTCRARGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+V G        + D+ RK  +G Q S   E     +  +  G S +   ++   EFP
Sbjct: 61  RVEVPGEAVFPVKSVGDLFRKAPEG-QFSVSVEE---GKATLLAGRSRYRFSTYGVQEFP 116

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
              + E+   +    A  + + L E T  A   EE   +L+  +F    E+  L  V+TD
Sbjct: 117 RLPSAEQGTPFGTTTAQQLFEALSEGTLAASTGEEYPQFLSCAYFQ--PENGFLRVVSTD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESL 235
             RLA +    V   A+ P I++P K + E+ RIL S D  + +KV   +++ + +   +
Sbjct: 175 SRRLAYSRF-AVGDAAEGPGILLPMKGIKELERILGSLDGETPLKVRFDDAQAYFSTSEV 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +VR ++ +FP Y+ ++P S         ++L +A++R+ ++     + V L LS    
Sbjct: 234 EFAVRRVEAKFPQYERILPTSRTTWFEAGRSSLVEALERIDVVVRDFNRMVVLQLSPGGS 293

Query: 296 C-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           C +    PD G+A+E +       P+ I FN ++ L+ +  +      D  V    +   
Sbjct: 294 CTLRGRAPDFGEAVEEVEGSIEGEPLRIAFNVRFFLDGLKALK-----DQGVRLDFNGPE 348

Query: 355 SSVFIRGKDKDS 366
             + IR    DS
Sbjct: 349 GHLAIRRPGSDS 360


>gi|260662539|ref|ZP_05863434.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553230|gb|EEX26173.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 379

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 173/353 (49%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT------ 54
           MK T+ R+  +  L +  R +  K+TIP+   + L  ++  + +  S  +I I       
Sbjct: 1   MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60

Query: 55  -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            G    +V+  G+I + A    DIV+KL D  Q++    +  G +  I  G + F +   
Sbjct: 61  DGQYQLTVEEPGAIVLPARFFSDIVKKLPD-QQVTIAVTD--GFQAQIMSGTAEFVINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   SFE+A+ +  +++ +T  A++ +E R  L GI  H++  D  L A
Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +     +   +++P  ++ E+ R++      VK+ +++++      
Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           +     RL++G +P+   +IP +++  + ++ +    A++R S++S   R   VKL++  
Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295

Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
                 V  ++ D+G   E++     E   ++I FN  ++ + + +    +++
Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAKII 348


>gi|322392424|ref|ZP_08065884.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris
           ATCC 700780]
 gi|321144416|gb|EFX39817.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris
           ATCC 700780]
          Length = 378

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 173/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IPV   + +  N+  + +  S  +I I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPVLSTIKIDVNNEGITLIGSNGQISIENFISQK 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  ++  GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+ 
Sbjct: 62  DENAGLLINSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QDQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171
               ++P  +E        L + +LK ++  T FA + +E R  L G+ F + N ++LK 
Sbjct: 118 KDSEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLSNHKELK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 177 -TVATDSHRLSQKKLTLEKNSDNF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERSRLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V++P++GK  E ++ +  +   + I FN  YL+E +  ++S++V 
Sbjct: 295 KQGVVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEKVT 347


>gi|167755164|ref|ZP_02427291.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402]
 gi|237733413|ref|ZP_04563894.1| DNA polymerase III subunit beta [Mollicutes bacterium D7]
 gi|167705214|gb|EDS19793.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402]
 gi|229383448|gb|EEO33539.1| DNA polymerase III subunit beta [Coprobacillus sp. D7]
          Length = 369

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 165/339 (48%), Gaps = 15/339 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R  +L  L  A + +  ++ +PV   +     D  L +  S  +I I   I   
Sbjct: 1   MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            D+     G + +++  + DIVRK+  D  +I        G    IS   S F L     
Sbjct: 61  EDLTIYQTGGVVLNSRYILDIVRKIDSDEIKIEILD----GALTRISGATSKFDLNGTDV 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P     +      L +  LK+++ +T FA + +E +  L GI F      L+ C  A
Sbjct: 117 LDYPRIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINFKAGNRQLE-CT-A 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RLA   V +   +    +I +P+K++ EI +I+  +D  +++ +S+ ++    ++ 
Sbjct: 175 TDSYRLAKKIVSLDEDVTF--NITIPQKSLDEISKIIE-RDEMIEMYVSDRKVLYVFDNN 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RLIDG FP+   +IP + D EL ++   L  A+DRVS++++ +   +KL +S +K+
Sbjct: 232 IIQTRLIDGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKV 291

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEII 333
            ++    ++G   E ++  +Y   P+ I F+ KY  + I
Sbjct: 292 VLSSYMQEIGSVEEILDKSFYKGTPISISFSSKYATDAI 330


>gi|184154478|ref|YP_001842818.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|183225822|dbj|BAG26338.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|299782687|gb|ADJ40685.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 379

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 173/353 (49%), Gaps = 16/353 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT------ 54
           MK T+ R+  +  L +  R +  K+TIP+   + L  ++  + +  S  +I I       
Sbjct: 1   MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60

Query: 55  -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            G    +V+  G+I + A    DIV+KL D  Q++    +  G +  I  G + F +   
Sbjct: 61  DGQYQLTVEEPGAIVLPARFFSDIVKKLPD-QQVTIAVTD--GFQAQIMSGTAEFVINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   SFE+A+ +  +++ +T  A++ +E R  L GI  H++  D  L A
Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +     +   +++P  ++ E+ R++      VK+ +++++      
Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           +     RL++G +P+   +IP +++  + ++ +    A++R S++S   R   VKL++  
Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295

Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
                 V  ++ D+G   E++     E   ++I FN  ++ + + +    +++
Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAKII 348


>gi|88192167|pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase
           Of Streptococcus Pyogenes
 gi|88192168|pdb|2AVT|B Chain B, Crystal Structure Of The Beta Subunit From Dna Polymerase
           Of Streptococcus Pyogenes
          Length = 378

 Score =  107 bits (267), Expect = 3e-21,   Method: Compositional matrix adjust.
 Identities = 93/354 (26%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-MVVLPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|189345560|ref|YP_001942089.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245]
 gi|189339707|gb|ACD89110.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245]
          Length = 374

 Score =  107 bits (267), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/369 (26%), Positives = 176/369 (47%), Gaps = 21/369 (5%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           I  K   P   +V L   +G+L + A+  EI IT          G+I + A  L D +R 
Sbjct: 21  IPAKTIDPRYDNVHLTLENGMLTLYATDGEISITAKCEVETADSGNIGIKARTLQDFLRS 80

Query: 81  LQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137
           + D       +  E+   GT V I+     + +    ES+   T E+ Y    +L ++ L
Sbjct: 81  MYDTPVTFSIERQEISDHGT-VFIATDKGRYKIPCLFESKAEKT-EKTYDIVLDLKTAEL 138

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
           ++L+++T FA + + +R  + G+ F I E   ++ +VATDGHRL      I  Q+ +   
Sbjct: 139 QDLIQKTVFACSVDGMRPAMMGVLFEIEEN--QITSVATDGHRLVRCRKPITIQVEEKQK 196

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           I+VP + +  I ++   ++ S+ +      +     ++ +   LI   +PNY+ VIP  +
Sbjct: 197 IVVPSRVLSIIQKLAQHENVSMSIDEERRTVCYICNNVVLEAALIVEPYPNYEAVIPVEH 256

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYN 316
           DK++    T++  +V RV   SS  I  +K+ +S + L +  +N + G+ A E +   Y+
Sbjct: 257 DKKIVTQRTDIYDSVKRVGRFSS--IGDIKIEVSGEVLKIMAENTNEGESAQEDLPCSYS 314

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             P+ I FN K++   + ++      + E+   L S  ++V    K    K N++     
Sbjct: 315 GDPIIIGFNAKFIEAALAHLD-----ESEITIELKSPTTAVIF--KPGIQKENEE----L 363

Query: 377 FYVLMPMRI 385
             ++MP+RI
Sbjct: 364 IILVMPVRI 372


>gi|168484306|ref|ZP_02709258.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042453|gb|EDT50499.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198866|gb|EGJ12948.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47368]
          Length = 378

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEKVT 347


>gi|295398134|ref|ZP_06808183.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans
           ATCC 11563]
 gi|294973653|gb|EFG49431.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans
           ATCC 11563]
          Length = 383

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 169/353 (47%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ RS  ++ L    R I  + TIPV   V +   +  L +  S   I I   I A 
Sbjct: 1   MKFSINRSVFIQNLTDVQRAISSRTTIPVLTGVKISVKEEGLYLTGSDATISIEAFIDAK 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I + +  L +IV+KL          EN    +  I+   ++F L   
Sbjct: 61  DDDNKLKIEATGDIVLPSRFLGEIVKKLPSDMMNLEVVEN---FQTEITSDRASFTLNGI 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             SE+P   E +   ++ L +   K +V +T  +++ +EIR    GI F I   +LK  A
Sbjct: 118 NGSEYPRLPEIDAKQTYALPTDTFKQVVNQTIISVSNQEIRPIFTGIHFEIGNGELK--A 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSII---VPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRL+   + +        +++   +P +++ E++RI+ S +  +++ ++++++  
Sbjct: 176 VATDSHRLSQRIMPLTMPEVAGDTVLDINIPGRSLQELIRIVDSNE-DIEMMVTDNQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
              ++ +  RL++G +PN   ++P  +   + V  + L  AV+R  I+S   +   V+L+
Sbjct: 235 KARNIYLYSRLLEGNYPNTDRLLPNDHSTIIEVAASELVNAVERALILSHEGKNNVVRLN 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           +S   + ++  + ++G   E +NV   E   ++I FN  YL E + +     V
Sbjct: 295 ISDQDIILSSQSAEVGNVEEEINVVKAEGEALEISFNPDYLREALKSFGQQNV 347


>gi|270308396|ref|YP_003330454.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS]
 gi|270154288|gb|ACZ62126.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS]
          Length = 378

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  GS TV A LL + V  L  D  +++    N     +NI        +      +FP
Sbjct: 61  IEEEGSTTVPAKLLTEFVSSLPNDKIELNL---NAKSKALNIKCARFEARITGVDAKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   S ++     +  V    FA AT+E R  L G+        L L A   DG 
Sbjct: 118 PVPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAA--DGF 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236
           RLAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ 
Sbjct: 176 RLAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIE 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290
           +  +L+ G FP Y  +IP S   ++ V+      A    +I +      V+L +      
Sbjct: 236 LVSQLVQGNFPQYSQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNN 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  KL ++  + ++G     ++         I FN KYLL+++  + +      +V   +
Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S +S   I+    D         N  +V+MPM
Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|21234115|ref|NP_639692.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)]
 gi|13620601|emb|CAC36640.1| putative DNA-polymerase III, beta chain [Streptomyces coelicolor
           A3(2)]
          Length = 372

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 93/391 (23%), Positives = 173/391 (44%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++ +     + +A R +  +  +P+   +LL A+   L I A   EI       A+
Sbjct: 1   MKLTIDHTAFAAAVSYAVRSLPARPPVPILAGLLLDASSSGLRISAFDYEISADTTAAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   VS  LL DIV  ++    +        G  + +  G + F L + P  E+P+
Sbjct: 61  VTETGRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTLPLDEYPA 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +    L        V +   A++ EE    L GI  H + E   L   ATD +R
Sbjct: 116 LPEPGTITG-TLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTLYATDRYR 174

Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESL 235
            AV  +    + A +P  S ++P +A+ +  +  ++ D++V ++L         L  +  
Sbjct: 175 FAVRTLSW--KDANLPDTSAVIPGRALSDAAKA-TADDTTVDLALPTGDAGLFTLRSDLT 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK- 294
           + ++R ++GE P Y  + P        V    L+ A  RV+++S+ +   +KL+ ++D  
Sbjct: 232 TTAIRALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTADST 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     D  +A++S++       + I FN  +LL+ ++ + +     + V F   S  
Sbjct: 292 LVLEGGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNALMA-----ESVQFDFISPT 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +R  D D +  +       Y+LMP+R+
Sbjct: 347 KPAVLRAHDGDDQALR-------YLLMPIRL 370


>gi|326383910|ref|ZP_08205594.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197369|gb|EGD54559.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 400

 Score =  107 bits (266), Expect = 4e-21,   Method: Compositional matrix adjust.
 Identities = 96/355 (27%), Positives = 160/355 (45%), Gaps = 27/355 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R +  + +    R +  +  +PV   V+L A++  L++     E+  T  I A 
Sbjct: 1   MKFRVVRDEFADAVAWVARSLPSRPPVPVLGCVVLTADEFGLQVAGFDYEVSATQVISAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V   G   VS  LL DI + L +       K  ++   G+ V IS G + F L + P  +
Sbjct: 61  VSESGKALVSGRLLADITKALPN-------KPVDVTIDGSRVAISCGSAKFSLPTMPVED 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P   E     +  + + +    V +   A   ++    L G+   I  E  K+   ATD
Sbjct: 114 YPELPEVPQ-NTGSVPADLFSEAVSQVAIAAGKDDTLPMLTGVRVEI--EGDKVVLAATD 170

Query: 178 GHRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RLAV E+  + A      + +VP K + E  +  +  DS+  V L+   +H  I S  
Sbjct: 171 RFRLAVRELQWLPADAGASGAALVPAKTLSEAAKS-AGADSTGNVELAFGAVH-AIGSEG 228

Query: 237 M----------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           M          + RL+D EFP ++ + P ++     V    L +++ RVS+++  R   V
Sbjct: 229 MLGITNNAKKTTTRLLDAEFPKFRQLFPANHTSIATVESAPLIESIKRVSLVAE-RGAQV 287

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +L  SSD + +T    + GKA E + V +   P+ I FN  YLL+ +  I ++ V
Sbjct: 288 RLDFSSDSVLLTAGGDEAGKAEEELPVQFYGEPIIIAFNPHYLLDGLAAIGTETV 342


>gi|257461145|ref|ZP_05626243.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268]
 gi|257441519|gb|EEV16664.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268]
          Length = 359

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 88/368 (23%), Positives = 179/368 (48%), Gaps = 26/368 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+ + +  + E++ +    +++K+   ++ H+L+ A DG+  IKA+  EI ++  +   
Sbjct: 1   MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S++  G  T +   L  +++ L D +         +   + +    S + L  F   +FP
Sbjct: 61  SIETEGEATANGGKLLSVIKGLSDDS----VTLETVNGALFVKQKKSKYKLPMFETRDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    E   SF++ + +L   +++ + ++ T   +Y LNG    + E  L L  V TD  
Sbjct: 117 SFPVVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNL--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL+V ++   ++  ++ + I++P+KA+GEI ++ S K   +K+   E+ +    E+    
Sbjct: 175 RLSVYKLITQSKAGELDTKILIPKKAIGEIQKLFSDK---IKIYYDENVLLAVSENFEFF 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY+ VIP     ++ +    +   V  ++ M     + +K+++  D +   
Sbjct: 232 TKLINGKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMC----EEMKVTIKKDGMIFE 287

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYK--YLLEIIDNISSDEVVDDEVVFRLD-SSNS 355
             N D  +A   +     E   +I F  K  +LL+ + NI S+       +F LD +S+ 
Sbjct: 288 SINEDNSEAKTEIEATI-EINGEIVFGVKNRFLLDFLSNIESE-------IFELDFNSSD 339

Query: 356 SVFIRGKD 363
           + F+   D
Sbjct: 340 TAFVLSAD 347


>gi|113953564|ref|YP_729240.1| DNA polymerase III subunit beta [Synechococcus sp. CC9311]
 gi|113880915|gb|ABI45873.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9311]
          Length = 385

 Score =  107 bits (266), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 86/355 (24%), Positives = 177/355 (49%), Gaps = 17/355 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   +  +G ++   I  ++ 
Sbjct: 1   MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASVD  G++T+ A LL +IV KL   + +S   +     +V ++    ++ ++  P  +F
Sbjct: 61  ASVDTSGAVTLPARLLGEIVSKLSSDSPVSLSSDAG-ADQVELTSSSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   +  +  + L   +  T FA + +E +  L G+    N++  +L A +TDG
Sbjct: 120 PELPLVENGTALRVDPASLLKALRATLFASSGDEAKQLLTGVHLRFNQK--RLEAASTDG 177

Query: 179 HRLAVAEVD--IVAQIAKMPS------IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           HRLA+  V+  + A+I+   S      + +P +++ E+ R+++S      VSL   R  +
Sbjct: 178 HRLAMLTVEDALQAEISAEESEPDELAVTLPARSLREVERLMASWKGGDPVSLFCERGQV 237

Query: 231 NIESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            + +    V  R ++G +PNY+ +IP    + + ++      A++R+++++      V++
Sbjct: 238 VVLAADQMVTSRTLEGTYPNYRQLIPDGFSRTIDLDRRAFISALERIAVLADQHNNVVRI 297

Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +   ++  + ++ D  D+G   ES+    N   + I FN +Y+L+ +  +  D V
Sbjct: 298 ATEPATGLVQISADAQDVGSGSESLPAEINGDAVQIAFNARYVLDGLKAMDCDRV 352


>gi|306826409|ref|ZP_07459723.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304431404|gb|EFM34399.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 378

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 92/354 (25%), Positives = 172/354 (48%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K  AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I 
Sbjct: 176 K--AVATDSHRMSQRLITLDNTSADF-DVVIPSKSLREFSAVFTDDIETVEVFFSPSQIL 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
              E +S   RL++G +P+   ++    + ++  N  +LR A++R  ++S + +   VKL
Sbjct: 233 FRSEHISFYTRLLEGNYPDTDRLLMTEFETKVVFNTQSLRHAMERAFLISNATQNGTVKL 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 293 EITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|296137753|ref|YP_003644996.1| DNA polymerase III subunit beta [Tsukamurella paurometabola DSM
           20162]
 gi|296025887|gb|ADG76657.1| DNA polymerase III, beta subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 396

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 101/405 (24%), Positives = 177/405 (43%), Gaps = 40/405 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V   +  E +    R +  +  +PV   VLL A D  L +  SG + E++  +   
Sbjct: 10  MKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTV--SGFDYEVSAQVRVG 67

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESE 117
            +V   G + VS  LL DI + L +        + EL  T V IS G + F L + P  +
Sbjct: 68  AEVADEGQVLVSGRLLADITKALPNKP-----VDVELDVTRVAISCGSAKFSLPTMPVED 122

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P   E  +   + E   S+    + +   A   ++    L GI   I  E  ++   AT
Sbjct: 123 YPQLPELPQQTGAIE--RSMFAEAISQVAIAAGKDDTLPMLTGIRVEI--EGQRVVLAAT 178

Query: 177 DGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSL-------SESRI 228
           D  RLAV E D   Q   +  +++VP K + E  +  +  DS V ++L       ++  +
Sbjct: 179 DRFRLAVREFDWQPQSGDVKAAVLVPAKTLSEAAKTFAG-DSEVGIALGAGSAVGADGLL 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            +       + RL+D +FP ++ ++P S+     +    L +A+ RV++++  R   V++
Sbjct: 238 GVVGPDRRTTTRLLDADFPKFRQLLPASHTAIATMEIAPLLEAIKRVALVAD-RGAQVRM 296

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
                 L ++    D GKA E +   +   P+ I FN  YL + +  I +     D V F
Sbjct: 297 EFGDGTLRLSAGGDDAGKAEEELPADFQGEPLTIAFNPGYLQDGLAAIHT-----DSVTF 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAF--------YVLMPMRI 385
              + +    +R   +++    D+   AF        Y+LMP+R+
Sbjct: 352 GFTTPSRPAVLRPTVENAFQPDDS--GAFPAPQSAYTYLLMPVRL 394


>gi|15899951|ref|NP_344555.1| DNA polymerase III subunit beta [Streptococcus pneumoniae TIGR4]
 gi|148988887|ref|ZP_01820302.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|148993606|ref|ZP_01823077.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68]
 gi|148997956|ref|ZP_01825469.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003111|ref|ZP_01828020.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007715|ref|ZP_01831324.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP18-BS74]
 gi|149020160|ref|ZP_01835134.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP23-BS72]
 gi|168487222|ref|ZP_02711730.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|168489314|ref|ZP_02713513.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195]
 gi|168493998|ref|ZP_02718141.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|168576112|ref|ZP_02722017.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016]
 gi|169834446|ref|YP_001693436.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194397554|ref|YP_002036723.1| DNA polymerase III subunit beta [Streptococcus pneumoniae G54]
 gi|221230950|ref|YP_002510102.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC
           700669]
 gi|225853613|ref|YP_002735125.1| DNA polymerase III subunit beta [Streptococcus pneumoniae JJA]
 gi|225855737|ref|YP_002737248.1| DNA polymerase III subunit beta [Streptococcus pneumoniae P1031]
 gi|225857811|ref|YP_002739321.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 70585]
 gi|237651055|ref|ZP_04525307.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI
           1974]
 gi|237821168|ref|ZP_04597013.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229493|ref|ZP_06963174.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255937|ref|ZP_06979523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501758|ref|YP_003723698.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|303254903|ref|ZP_07340988.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455]
 gi|307066638|ref|YP_003875604.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae
           AP200]
 gi|307126153|ref|YP_003878184.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 670-6B]
 gi|18266730|sp|O06672|DPO3B_STRPN RecName: Full=DNA polymerase III subunit beta
 gi|14971466|gb|AAK74195.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae TIGR4]
 gi|147755966|gb|EDK63009.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758852|gb|EDK65848.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760710|gb|EDK67682.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925698|gb|EDK76774.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|147927827|gb|EDK78849.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68]
 gi|147930838|gb|EDK81819.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996948|gb|ACA37560.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183569923|gb|EDT90451.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|183572312|gb|EDT92840.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195]
 gi|183575839|gb|EDT96367.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578124|gb|EDT98652.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016]
 gi|194357221|gb|ACF55669.1| DNA polymerase III beta subunit [Streptococcus pneumoniae G54]
 gi|220673410|emb|CAR67868.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC
           700669]
 gi|225720912|gb|ACO16766.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 70585]
 gi|225723086|gb|ACO18939.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae JJA]
 gi|225725186|gb|ACO21038.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae P1031]
 gi|298237353|gb|ADI68484.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|301793327|emb|CBW35686.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV104]
 gi|302598174|gb|EFL65235.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455]
 gi|306408175|gb|ADM83602.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae
           AP200]
 gi|306483215|gb|ADM90084.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 670-6B]
 gi|332071324|gb|EGI81819.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17545]
 gi|332071686|gb|EGI82179.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17570]
 gi|332198659|gb|EGJ12742.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41317]
 gi|332199069|gb|EGJ13150.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47901]
          Length = 378

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|325300579|ref|YP_004260496.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
 gi|324320132|gb|ADY38023.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
          Length = 373

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 184/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIP- 58
           MK TV  + +   L    +++  K  +P+    LL+   D  LE+ AS  E    G++  
Sbjct: 1   MKFTVSSTAMANKLATMAKVMNNKPALPILSTFLLEVKEDAPLEVTASDLECVWHGSLDI 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +  G + ++A  L D VR L +  Q   F  ++    V I + + ++ +  F   E+
Sbjct: 61  TGQEGAGKVCITASTLLDAVRNLPE--QPITFTIDDKDKSVTIHYLNGHYGMAGFGSDEY 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  + E  +  F++ ++ L N ++++ FA++ + +R  + GI + I+  D KL   A+DG
Sbjct: 119 PMMQNECDI-RFDMDAATLCNSIDQSLFAVSYDALRPVMTGINYTIS--DGKLECAASDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     +A  A     ++  KA   +  +L  K+ SV+V  +   I    ++ S S
Sbjct: 176 HKL-VRNTYPLAGNADDCRFVLSAKAAKIVKLLLHKKEGSVEVEYNGRNIVFKTDTDSFS 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  ++P +++KE  ++   L  A+ RV + +    + + LS S   L +T
Sbjct: 235 TRLIEGTYPNYNAIVPTNSNKEATIDRQALLSAIRRVGVFAERTSRQLVLSFSGMALLLT 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y    + I F+ + L  I++N+ +      EV FR+  +  + 
Sbjct: 295 GHDFDNATSAEETVFCTYQGDEVRIAFHAENLKMILENMDT-----AEVRFRMSEACRAA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I     D ++          +LMPM +
Sbjct: 350 IIEPVSGDVQSEH------LALLMPMML 371


>gi|148984546|ref|ZP_01817834.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71]
 gi|225860014|ref|YP_002741523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147923323|gb|EDK74437.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71]
 gi|225727256|gb|ACO23107.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|301799151|emb|CBW31663.1| DNA polymerase III, beta chain [Streptococcus pneumoniae OXC141]
 gi|327388987|gb|EGE87335.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA04375]
          Length = 378

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIEAVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|145218824|ref|YP_001129533.1| DNA polymerase III, beta subunit [Prosthecochloris vibrioformis DSM
           265]
 gi|145204988|gb|ABP36031.1| DNA polymerase III, beta subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 374

 Score =  106 bits (265), Expect = 5e-21,   Method: Compositional matrix adjust.
 Identities = 97/390 (24%), Positives = 183/390 (46%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T     + + +G   + I  K+      ++ L    G L   A+  E+ IT      
Sbjct: 1   MKLTSSIKQLQDAVGKVAQAIPAKSIDQRFENIHLSIEPGALTFFATDGEVSITARSEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKE----NELGTEVNISHGDSNFYLQSFPES 116
               G+I + A  L + +R + D   +SF  E    +E GT VNI+     + +    ++
Sbjct: 61  TSDSGNIGIRARALQEFLRSMYD-TSVSFSIERQEVSEHGT-VNIATDKGRYTMPCLFQA 118

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           + P   E+ Y  S E+ +  + +++++T FA + + +R  + G+ F + E DL L A+AT
Sbjct: 119 K-PEKHEKNYDISLEMETGEMLDIIQKTTFACSVDGMRPAMMGVLFEL-EGDL-LTAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRL     D    + +   I+VP + +  + ++  ++  S+ +      +  N  S+ 
Sbjct: 176 DGHRLVRCRKDSSLCMPEKLKIVVPSRVLSILQKLAQTETVSMSIESERKFVRFNCGSIV 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +   LI   +PNY+ VIP  +DK+L +N + +  ++ RV   SS  I  VK+ +    L 
Sbjct: 236 LDAALIIEPYPNYEAVIPVEHDKQLIINRSTIYDSIRRVGRFSS--IGDVKVQIEGAVLK 293

Query: 297 MTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +  +N + G+ A+E +   Y    + I FN ++L   + ++      + EV   L S  +
Sbjct: 294 IMAENTNEGESAVEELACNYTGEDISIGFNSRFLEAALAHLD-----ESEVSIELKSPTT 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V  R   ++  +          ++MP+RI
Sbjct: 349 AVIFRPHLEEKSD------RLIILVMPVRI 372


>gi|320547712|ref|ZP_08041997.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus
           ATCC 9812]
 gi|320447787|gb|EFW88545.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus
           ATCC 9812]
          Length = 378

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 179/353 (50%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ +S  L+ L    R I  KN +P+   + ++  +  + +  S  +I I   IP +
Sbjct: 2   IKFSINKSFFLQALNATKRAISTKNALPILSTIKIEVQNNNITLTGSNGQISIENTIPTT 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G++ + A+   +IV  L D   ++  F+E E    V IS G S   L+ 
Sbjct: 62  NENAGLLITSPGAVLLEANFFINIVSSLPD---VTLDFEEIESHQIVLIS-GKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
                +P  +E        + + +LK+++  T FA + +E R  L G+   +++ +D K 
Sbjct: 118 KDVDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKDFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ +    +   +++VP K++ E   + +    +V+V  S+S++   
Sbjct: 177 -AVATDSHRMSQRKLTL-ENTSNDFNVVVPSKSLREFAAVFTDDIETVEVFFSDSQMLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++  S + E+  N   LR A++R  ++S + +   VKL +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLTNSFETEVTFNTNALRSAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++ +   V++P++GK  E +++   +   + I FN  YL+E +  + S+ V+
Sbjct: 295 TNNSVSAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKSETVI 347


>gi|228985790|ref|ZP_04145940.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773962|gb|EEM22378.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 376

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNVKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  ++IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E   +I F+ +++L+ +  I  + V
Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETV 345


>gi|21909538|ref|NP_663806.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS315]
 gi|28894914|ref|NP_801264.1| DNA polymerase III subunit beta [Streptococcus pyogenes SSI-1]
 gi|21903718|gb|AAM78609.1| beta subunit of DNA polymerase III [Streptococcus pyogenes MGAS315]
 gi|28810159|dbj|BAC63097.1| putative DNA polymerase III beta subunit [Streptococcus pyogenes
           SSI-1]
          Length = 378

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 172/353 (48%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G+I + A    +I+  L D   I+  KE E   +V ++ G S   L+  
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD-ININV-KEIE-QHQVVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLK 170
              ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D K
Sbjct: 119 DVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDFK 176

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             AVATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I  
Sbjct: 177 --AVATDSHRMSQRLITLDNTSADF-DVVIPGKSLREFSAVFTDDIETVEVFFSPSQILF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS 289
             E +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S + +   VKL 
Sbjct: 234 RSEHISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLE 293

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++ + +   V++P++GK  E ++ V  +   + I FN  YL+E +  I S+ V
Sbjct: 294 ITQNHISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKSETV 346


>gi|47570668|ref|ZP_00241271.1| DNA polymerase III, beta subunit [Bacillus cereus G9241]
 gi|47552665|gb|EAL11113.1| DNA polymerase III, beta subunit [Bacillus cereus G9241]
          Length = 376

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 164/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNVKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  ++IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E   +I F+ +++L+ +  I  + V
Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETV 345


>gi|57234032|ref|YP_181940.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195]
 gi|57224480|gb|AAW39537.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195]
          Length = 378

 Score =  106 bits (265), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 176/393 (44%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  GS TV A LL + V  L  D  +++    N     +NI        +      +FP
Sbjct: 61  IEEEGSTTVPAKLLTEFVSSLPNDKIELNL---NAKSKALNIKCARFEARITGVDAKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   S ++     +  V    FA AT+E R  L G+        L L A   DG 
Sbjct: 118 PVPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTLAAA--DGF 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236
           RLAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ 
Sbjct: 176 RLAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIE 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290
           +  +L+ G FP Y  +IP S   ++ V+      A    +I +      V+L +      
Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNN 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  KL ++  + ++G     ++         I FN KYLL+++  + +      +V   +
Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKA-----QQVSLEV 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S +S   I+    D         N  +V+MPM
Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|167957209|ref|ZP_02544283.1| DNA polymerase III, beta subunit [candidate division TM7
           single-cell isolate TM7c]
          Length = 365

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 91/390 (23%), Positives = 188/390 (48%), Gaps = 32/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ +  + + L     I   +N +P+  ++LL+ + G L +  +  EI  T  I A 
Sbjct: 1   MKVSITQEKLAKALNLIKDIASSRNELPILNNILLRTDGGRLLVAGTNLEIASTQYIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  GSIT+ A L+ + V  L  G  +    +NE    ++I+ G  +  +      E+P 
Sbjct: 61  IDKHGSITIPARLVSEFVSNLPSGT-VELEAKNE---HLHITSGKFSSVINGVVADEYPE 116

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T +E+    +E+    LK  + +T  A++++  R  L G+++H +E  L L   ATDG
Sbjct: 117 LPTIDEKTAIQYEIDVEDLKKAIIQTKIAVSSDVTRAVLTGVYWHNHEGSLYLA--ATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA      +A+     S I+P   + E+ + +  ++  + V   ES++      + + 
Sbjct: 175 YRLAEKR---LAKSNDEVSAIIPASTLSEVSKSV-GEEKKITVLFDESQVCFRTGDMEIV 230

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG+FP+Y+ +IP S++ E+ +   +  +     ++ +      + ++ S +   ++
Sbjct: 231 SRLIDGKFPDYRQLIPSSSETEIVIKKADFSRVTKIAALFARESGGGITVTASKENSLLS 290

Query: 299 VDN--PDMGKAIESMNVYYNECPMD--ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   ++G   E+ +    E   D  +  N +YL E+++ I +     DE+ F  +   
Sbjct: 291 IHSIASELG---ENTSEASAEISADGQVTLNSRYLTEVLNIIDA-----DEITFSFNGKL 342

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S   IR + K+         +  +++MP++
Sbjct: 343 SPCVIREQVKNP--------DYTHIIMPLK 364


>gi|55821995|ref|YP_140436.1| DNA polymerase III subunit beta [Streptococcus thermophilus
           CNRZ1066]
 gi|55737980|gb|AAV61621.1| beta subunit of DNA polymerase III [Streptococcus thermophilus
           CNRZ1066]
          Length = 378

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A+   ++V  L D      F+E E   +V +    S   L+  
Sbjct: 62  EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSAKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + +LK+++  T FA +T+E R  L G+ F + N +DLK  
Sbjct: 119 DAEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   A    +++P +++ E+  + S    ++++  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+    + LR A++R  ++S+  +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEII 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKSESV 346


>gi|269216527|ref|ZP_06160381.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122]
 gi|269130056|gb|EEZ61138.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122]
          Length = 364

 Score =  106 bits (264), Expect = 6e-21,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 175/388 (45%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +++ L  LG A + I  ++TIP+   V ++     LE+K +  E  I   + A 
Sbjct: 1   MKFSINKTEFLNALGIAGKGIASRSTIPILSGVYIKTLGTSLELKGTDSERAIRCTVSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G   V   LLYDIV+   D A      E    T+  IS   ++F L+ F  ++FP+
Sbjct: 61  IDEDGECVVPERLLYDIVKSFPDAAITMEVDE----TQALISCDKTSFTLKVFDPADFPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +      ++       V+R     + ++ R  L G+      + ++L  VATD +R
Sbjct: 117 FPDIDVNTKASISFKAFSQAVKRVAKVASKDQGRPALTGVLITTIPDGMRL--VATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ ++          +++    +  + +  L  K+ S+++ LS + +     S+    R
Sbjct: 175 LAMDDIPCENPTEGFEALV--SGSFMQEVASLPEKEESIEICLSSNHVVFTYGSIVFINR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK---LCM 297
            I+  FPNYQ ++  S           +  AV RV +MSS+    +K  + S     L  
Sbjct: 233 RIEARFPNYQQLLTDSYTTRTEFETAGILAAVRRVGLMSSLS-APIKFDIESSTATALLS 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           TV   DMG A ES++       ++I  N++Y   ++D +SS  +  D+V     +S    
Sbjct: 292 TVSQ-DMGSAEESLSCDVEGENIEIALNHQY---VVDGLSS--IPTDKVFLETRTSMMPG 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             R +D +            Y+LMP+RI
Sbjct: 346 IFRAQDPE---------RFLYLLMPVRI 364


>gi|116626974|ref|YP_819593.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMD-9]
 gi|116100251|gb|ABJ65397.1| DNA polymerase III, beta subunit [Streptococcus thermophilus LMD-9]
 gi|312277420|gb|ADQ62077.1| DNA polymerase III, beta subunit [Streptococcus thermophilus ND03]
          Length = 378

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 86/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A+   ++V  L D      F+E E   +V +    S   L+  
Sbjct: 62  EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSAKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + +LK+++  T FA +T+E R  L G+ F + N +DLK  
Sbjct: 119 DAEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   A    +++P +++ E+  + S    ++++  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+    + LR A++R  ++S+  +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEII 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKSESV 346


>gi|329576317|gb|EGG57832.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1467]
          Length = 304

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 78/289 (26%), Positives = 145/289 (50%), Gaps = 13/289 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV+RS  L+ L    R I  K TIP+   V +  ++  L +  S  +I I   +   
Sbjct: 1   MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  GSI + +    +I+RKL +     F  E     +V I+ G ++F +   
Sbjct: 61  DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDM---FTMEVLDNNQVAITSGKADFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     +L   +L  ++  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   V    Q  +  +I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLS-QRVIPTEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
           ++    RL++  +P+   +IP S++ ++      L  A++R S++S  R
Sbjct: 235 TMYFYSRLLEVHYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHER 283


>gi|255535062|ref|YP_003095433.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255341258|gb|ACU07371.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 385

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/346 (25%), Positives = 159/346 (45%), Gaps = 8/346 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V   ++ + L     +I    + P+  + L + ++  L+I AS  E  +  ++   
Sbjct: 10  MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLEVR 69

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESEF 118
            D  G   V A +  D V+   +       K+ E   G+ + I     NF +      ++
Sbjct: 70  SDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAEDY 129

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +   S ++++ +L   +  T FA + + +R  + G+ F   E++     V+TD 
Sbjct: 130 PELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNF--VSTDS 187

Query: 179 HRLAV-AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRL V    D++   A+    I+P+K +     IL++    V +  +E+       +   
Sbjct: 188 HRLVVYKRTDLMN--AEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIW 245

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLIDG++PNY  VIP  N   L +N   L  ++ R SIMS+     V+  LS + L +
Sbjct: 246 ICRLIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHL 305

Query: 298 TVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             ++ +   KA   +   YN   ++I F+ K+L E++  +SSD++ 
Sbjct: 306 HAEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSSDDIT 351


>gi|254818680|ref|ZP_05223681.1| DNA polymerase III subunit beta [Mycobacterium intracellulare ATCC
           13950]
          Length = 399

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 177/401 (44%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A 
Sbjct: 13  LKFRLVRESFADAVSWVAKNLPSRPAVPVLSGVLLSGTDDGLTISGFDYEVSAEAQVAAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DIVR L +   I F+ +   G  V ++ G++ F L +    ++P+
Sbjct: 73  IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGNARFSLPTMAVEDYPT 128

Query: 121 TK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                +E   +  L + +    + +   A   ++    L GI   I+ + + L   ATD 
Sbjct: 129 LPALPDE---TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230
            RLAV E+   A    +  +++VP K + E  R   +  + V++SL        +  + +
Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAARA-GADGAEVRLSLGAGAGVGKDGLLGI 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           +      + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  
Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S   L ++    D+G+A E + + +   P+ I FN  YL + + ++ S     + V F  
Sbjct: 302 SEGSLRLSAGADDVGRAEEDLAIDFAGEPLTIAFNPTYLTDGLGSVHS-----ERVSFGF 356

Query: 351 DSSNSSVFIRGK-DKDSKNNKDNKVNAF-----YVLMPMRI 385
            +      +R   D DS        +A      Y+LMP+R+
Sbjct: 357 TTPGKPALLRPALDDDSHPTGPGPFSALPTDYVYLLMPVRL 397


>gi|296110745|ref|YP_003621126.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832276|gb|ADG40157.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii
           IMSNU 11154]
          Length = 377

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 83/339 (24%), Positives = 163/339 (48%), Gaps = 17/339 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   +++L    R I  + TIP+  +V +  ND  L +  S  +I I   I  S
Sbjct: 1   MQFSINRQAFIKILNDVSRAISSRTTIPILTNVKIVLNDEELVLTGSNSDISIESRIDQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV+ L     ++   +   G   +I+ G S+F +   
Sbjct: 61  DTSAQLVIKETGGITLPATFFSNIVKNLP-ADHMTLAVD---GVRAHITSGASDFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E   V +  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  A
Sbjct: 117 DVRNYPQLPEMTDVQTLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +      + + +I+P K+  E+  +L  +D  V + L+ ++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGTETTVNADVIIPAKSFNELQSLLEGQD-RVDIKLAANQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
              +   RL++G +P    +IP  +  +L +  + L  A++R S++S   R   V+L+L+
Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTQLTIEASTLLGAINRASLLSHESRNNVVQLTLA 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
              + +T  + ++G+  E +     E   ++I FN  Y+
Sbjct: 294 DGVVTLTGTSQEVGRVQEELATTSVEGENLEISFNPDYV 332


>gi|168491772|ref|ZP_02715915.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573995|gb|EDT94523.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 378

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQYK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEKVT 347


>gi|119383096|ref|YP_914152.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222]
 gi|119372863|gb|ABL68456.1| DNA polymerase III beta subunit family protein [Paracoccus
           denitrificans PD1222]
          Length = 372

 Score =  106 bits (264), Expect = 7e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 12/256 (4%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           IT   +D+   +  A  ++ER+NTIPV   + ++  +  L I+++  +  +    PA+  
Sbjct: 15  ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PESEFPST 121
                 + A LL  ++   +    +S   +   G  V +  G +   +Q   P S++P+ 
Sbjct: 75  EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              + +    +  + L  ++ R  +A++TEE RYYLNGI+ H  E   +L   ATDGHRL
Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMHGREG--RLAVTATDGHRL 189

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238
           A+   DI     K+P +I PR +V  +  +++   +    +  S    R+ ++ +  S++
Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246

Query: 239 VRLIDGEFPNYQNVIP 254
           V+ IDG +P+Y  VIP
Sbjct: 247 VKCIDGAYPDYTRVIP 262


>gi|119383721|ref|YP_914777.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222]
 gi|119373488|gb|ABL69081.1| DNA polymerase III beta subunit family protein [Paracoccus
           denitrificans PD1222]
          Length = 372

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 70/256 (27%), Positives = 128/256 (50%), Gaps = 12/256 (4%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           IT   +D+   +  A  ++ER+NTIPV   + ++  +  L I+++  +  +    PA+  
Sbjct: 15  ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PESEFPST 121
                 + A LL  ++   +    +S   +   G  V +  G +   +Q   P S++P+ 
Sbjct: 75  EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              + +    +  + L  ++ R  +A++TEE RYYLNGI+ H  E   +L   ATDGHRL
Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMHGREG--RLAVTATDGHRL 189

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238
           A+   DI     K+P +I PR +V  +  +++   +    +  S    R+ ++ +  S++
Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246

Query: 239 VRLIDGEFPNYQNVIP 254
           V+ IDG +P+Y  VIP
Sbjct: 247 VKCIDGAYPDYTRVIP 262


>gi|78101467|pdb|2AWA|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
 gi|78101468|pdb|2AWA|B Chain B, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
 gi|78101469|pdb|2AWA|C Chain C, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
 gi|78101470|pdb|2AWA|D Chain D, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
          Length = 390

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 87/350 (24%), Positives = 170/350 (48%), Gaps = 18/350 (5%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPAS-- 60
           ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I     
Sbjct: 17  SINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQKNE 75

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFP 114
                +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+   
Sbjct: 76  DAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLKGKD 131

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 132 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 190

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 191 ATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 249

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+ +R  ++SS      VKL +   
Sbjct: 250 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSXERARLLSSATQNGTVKLEIKDG 309

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 310 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 359


>gi|293550168|ref|ZP_06672840.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|290919215|gb|EFD96291.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
          Length = 290

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 65/243 (26%), Positives = 135/243 (55%), Gaps = 5/243 (2%)

Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160
           I+ G S F L      ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+
Sbjct: 20  ITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGV 79

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
            + I E +L +C  ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + 
Sbjct: 80  NWLIQENEL-ICT-ATDSHRLAVRKLQL-EDVSENKNVIIPGKALAELNKIMSDNEEDID 136

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS- 279
           +  + +++   + +++   RL++G +P+   + P + + +L ++      A+DR S+++ 
Sbjct: 137 IFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAR 196

Query: 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISS 338
                 +KLS   D + ++  +P++G   E ++    E   + I FN KY+++ +  I +
Sbjct: 197 EGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDN 256

Query: 339 DEV 341
           DEV
Sbjct: 257 DEV 259


>gi|149013382|ref|ZP_01834091.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP19-BS75]
 gi|182682972|ref|YP_001834719.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14]
 gi|303259728|ref|ZP_07345704.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293]
 gi|303262195|ref|ZP_07348140.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265391|ref|ZP_07351298.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397]
 gi|303266061|ref|ZP_07351955.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457]
 gi|303268469|ref|ZP_07354263.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458]
 gi|147762905|gb|EDK69853.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628306|gb|ACB89254.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14]
 gi|301800975|emb|CBW33636.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV200]
 gi|302636835|gb|EFL67325.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639280|gb|EFL69739.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293]
 gi|302641970|gb|EFL72323.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458]
 gi|302644365|gb|EFL74618.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457]
 gi|302645068|gb|EFL75308.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397]
          Length = 378

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|154249882|ref|YP_001410707.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153818|gb|ABS61050.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 367

 Score =  106 bits (264), Expect = 8e-21,   Method: Compositional matrix adjust.
 Identities = 83/344 (24%), Positives = 173/344 (50%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           +K TV +S+I + +  A   I  +   P+   +L +  +G + I A+  +  +   +   
Sbjct: 2   LKFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVG 61

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-F 118
             +   +  V A L+ DIVR L +   I  +   +L     +  G + + + +  + E F
Sbjct: 62  EYEGNDAFAVDAELVDDIVRNLPEDEFIFEYSNGKLL----VRSGKAKYNITTVSDIERF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P    +E    F + +S+L+ ++++  F  ++E     LNG+++ I+   L+L  VA+DG
Sbjct: 118 PIVDTDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRL--VASDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237
           +RL +AE  +   +      I+  K++ E+ ++LSS    V  ++   S +  N   ++ 
Sbjct: 176 YRLGLAEQKL--NLENEFDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTT 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
            VR ++  FP+Y+ V+P +    + +N  +  +A+ RV ++S    + V+L ++ D + +
Sbjct: 234 IVRTVEETFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMEL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           T  + D G+A+ES+ +  +   + + FN K+L E + +I   E+
Sbjct: 294 TSQSSDFGEAVESIPITKDGEDLIVNFNPKFLNEPLKHIDEKEI 337


>gi|332077809|gb|EGI88268.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41301]
          Length = 378

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQYK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|322390525|ref|ZP_08064043.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321142799|gb|EFX38259.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 380

 Score =  105 bits (263), Expect = 9e-21,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I   
Sbjct: 4   INFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIK 63

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   GSI + A    ++V  L D   ++  FKE E   +V ++ G S   L+ 
Sbjct: 64  DENAGLLVTSPGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQVLLTSGKSEITLKG 119

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P  +E        L + +LK L+  T FA + +E R  L G+ F +++ + +L 
Sbjct: 120 KDADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSD-NKELK 178

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HR++  +V  + +      +++P +++ E   + S    +V+V  + ++I    
Sbjct: 179 TVATDSHRMS-QKVITLEKNGDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRS 237

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           E +S   RL++G +P+   +IP   + E   N  NLR A++R  ++S + +   VKL   
Sbjct: 238 EHISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFK 297

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +  +   V +P++G+  E ++    +   + I FN  YL+E +  I S++VV
Sbjct: 298 NGVVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDSEQVV 349


>gi|312866786|ref|ZP_07726999.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis
           F0405]
 gi|311097569|gb|EFQ55800.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis
           F0405]
          Length = 378

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 168/352 (47%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I   
Sbjct: 2   INFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIK 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   GSI + A    ++V  L D   ++  FKE E   +V ++ G S   L+ 
Sbjct: 62  DENAGLLVTSPGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQVLLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P  +E        L + +LK L+  T FA + +E R  L G+ F +++ + +L 
Sbjct: 118 KDADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSD-NKELK 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HR++  +V  + +      +++P +++ E   + S    +V+V  + ++I    
Sbjct: 177 TVATDSHRMS-QKVITLDKNGDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           E +S   RL++G +P+   +IP   + E   N  NLR A++R  ++S + +   VKL   
Sbjct: 236 EHISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFK 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +  +   V +P++G+  E ++    +   + I FN  YL+E +  I S++VV
Sbjct: 296 NGVVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDSEQVV 347


>gi|289677550|ref|ZP_06498440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           FF5]
          Length = 174

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 65/182 (35%), Positives = 101/182 (55%), Gaps = 12/182 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA     G ITV A  L DI + L + A I   K +E  +++ +  G S F L + P +
Sbjct: 61  EPAE---PGEITVPARKLMDICKSLSNDALIDI-KLDE--SKLIVKAGRSRFTLSTLPAN 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP+ +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVAT
Sbjct: 115 DFPTVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVAT 172

Query: 177 DG 178
           DG
Sbjct: 173 DG 174


>gi|296875520|ref|ZP_06899592.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433444|gb|EFH19219.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 378

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 169/353 (47%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I   
Sbjct: 2   INFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIK 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   GSI + A    ++V  L D   ++  FKE E   +V ++ G S   L+ 
Sbjct: 62  DENAGLLVTSPGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQVLLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKL 171
               ++P  +E        L + +LK L+  T FA + +E R  L G+ F +++ +DLK 
Sbjct: 118 KDADQYPRIQEIVASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNKDLK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HR++  +V  + +      +++P +++ E   + S    +V+V  + ++I   
Sbjct: 177 -TVATDSHRMS-QKVITLEKNGDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E +S   RL++G +P+   +IP   + E   N  NLR A++R  ++S + +   VKL  
Sbjct: 235 SEHISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEF 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +  +   V +P++G+  E ++    +   + I FN  YL+E +  I S++VV
Sbjct: 295 KNGVVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDSEQVV 347


>gi|217960140|ref|YP_002338700.1| DNA polymerase III subunit beta [Bacillus cereus AH187]
 gi|222096204|ref|YP_002530261.1| DNA polymerase iii subunit beta [Bacillus cereus Q1]
 gi|229139332|ref|ZP_04267903.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
 gi|217067373|gb|ACJ81623.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|221240262|gb|ACM12972.1| dna polymerase iii, beta subunit [Bacillus cereus Q1]
 gi|228643879|gb|EEL00140.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
          Length = 376

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 163/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E   +I F+ +++L+ +  I  + V
Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETV 345


>gi|270291827|ref|ZP_06198042.1| DNA polymerase III, beta subunit [Streptococcus sp. M143]
 gi|270279355|gb|EFA25197.1| DNA polymerase III, beta subunit [Streptococcus sp. M143]
          Length = 378

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 169/352 (48%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   + +  N+  + +  S  +I I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVNNEGITLIGSNGQISIENFISQK 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+ 
Sbjct: 62  NEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L 
Sbjct: 118 KDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELK 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    
Sbjct: 177 TVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291
           E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL + 
Sbjct: 236 ENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIK 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
              +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 296 GGVVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNSEKVT 347


>gi|15902046|ref|NP_357596.1| DNA polymerase III subunit beta [Streptococcus pneumoniae R6]
 gi|116516939|ref|YP_815419.1| DNA polymerase III subunit beta [Streptococcus pneumoniae D39]
 gi|30315898|sp|P59651|DPO3B_STRR6 RecName: Full=DNA polymerase III subunit beta
 gi|2109446|gb|AAC45337.1| beta subunit of DNA polymerase III [Streptococcus pneumoniae]
 gi|15457530|gb|AAK98806.1| DNA biosynthesis; sliding clamp subunit, required for high
           processivity; DNA polymerase III beta-subunit
           [Streptococcus pneumoniae R6]
 gi|116077515|gb|ABJ55235.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae D39]
          Length = 378

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|283768636|ref|ZP_06341548.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219]
 gi|283105028|gb|EFC06400.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219]
          Length = 373

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 75/279 (26%), Positives = 144/279 (51%), Gaps = 8/279 (2%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G + + A  L +IVRKL D   I  F E+  GT        + F +      ++P+    
Sbjct: 71  GHLLIEAKYLLEIVRKL-DSDHI--FVESIDGTYTQFKGHQALFKINGMAVHQYPAIDFN 127

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +     EL  +   +L+E+T FA + +E++  L G+ F +     +L   ATD +RLA  
Sbjct: 128 KPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNN--QLVCTATDSYRLARK 185

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEI-LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            VD+ +Q     +I +P K++ ++   IL +   SV  S+  S+I + I+++    R++D
Sbjct: 186 VVDLDSQ--DQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRIDNMIFQSRILD 243

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G++P    +IP     EL +N  +L +A+DR S + S  ++  +L L +D+  +T  + +
Sbjct: 244 GDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLINDQAILTSRSQE 303

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +G++ E +   +    +DI F+  Y++E +  +  ++V+
Sbjct: 304 IGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVL 342


>gi|313889501|ref|ZP_07823147.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122113|gb|EFR45206.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 377

 Score =  105 bits (263), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 171/352 (48%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ RS  ++ L    R I  KN IPV   + ++ +   + +  S  +I I   IP S
Sbjct: 2   IQFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIENIIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   ++  FKE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLISSTGAILLEASFFINIISSLPD---LTLDFKEIE-HHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK-L 171
               ++P  +E        L + +LK+++  T FA +T+E R  L G+  H+  +D K  
Sbjct: 118 KDVEQYPRLQEVSTDNPLILETKLLKSIISETAFAASTQESRPILTGV--HLTLKDHKAF 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++   +  + + A    +++P +++ E   + +    +V++  S S+I   
Sbjct: 176 KAVATDSHRMS-QRLLTLEKSATDFDVVIPSRSLREFTSVFTDDIETVEIFFSPSQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            + +S   RL++G +P+   ++    + E   N   LR A++R  ++S + +   VKL +
Sbjct: 235 SDYISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +   +   V++P++GK  E +  V      + I FN  YL+E +  + ++ V
Sbjct: 295 TETSVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKALKNETV 346


>gi|110003909|emb|CAK98249.1| putative dna polymerase III, beta chain protein [Spiroplasma citri]
          Length = 372

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 170/352 (48%), Gaps = 22/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + ++R  IL+ L    RII +K  IP    +L++     +    S  +  I   I  +
Sbjct: 1   MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--GTEVNISHGDSNFYLQSFPE 115
              +   GS+ +    + +++RK++D      F   E+  G  + I   + +  L +   
Sbjct: 61  DLNITRIGSVLIKNKFIVEVIRKIEDE-----FITLEVVEGNLIKIKANNFDSVLNTLNS 115

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
           +++P     T+ +E +++    S+VLK ++ +T FA+  +E R   NG+    ++ + +L
Sbjct: 116 ADYPHLSFETEGKEIIFT----STVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKEL 171

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
              ATD  RL+  ++D          +I+P K + EI R++S  D  +K+ +++  + + 
Sbjct: 172 IITATDSFRLSCKKIDYSNNYN--FDVIIPGKFINEIGRLISENDQEIKMKITDKSVSVI 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
           I +  +  ++I+G++P+   VI  S +  L +N   L + ++R S++S+  +   V L +
Sbjct: 230 INNTIVQTKIIEGKYPDTSKVIATSFNTSLTINNRELIKIIERASVLSNETMTTIVTLKI 289

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
              K+ +T    ++G   E +  +  E     I FN KY+L+ +    + E+
Sbjct: 290 KEQKVLVTSFTQEIGNTEEEIREFKVEGTDQIIAFNSKYILDALKAFKTKEI 341


>gi|332522185|ref|ZP_08398437.1| DNA polymerase III, beta subunit [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313449|gb|EGJ26434.1| DNA polymerase III, beta subunit [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 377

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 168/351 (47%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ RS  ++ L    R I  KN IPV   + ++ +   + +  S  +I I   IP S
Sbjct: 2   IQFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIETIIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G+I + A    +I+  L D      FKE E   +V ++ G S   L+  
Sbjct: 62  NENAGLLISSTGAILLEASFFINIISSLPDFTLD--FKEIE-HHQVVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E        L + +LK+++  T FA +T+E R  L G+   + N ++ K  
Sbjct: 119 DVEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASTQESRPILTGVHLTLKNHKEFK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++   +  + + A    +++P K++ E   + +    +V++  S S+I    
Sbjct: 177 AVATDSHRMS-QRLLTLEKSATDFDVVIPSKSLREFTSVFTDDIETVEIFFSPSQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           + +S   RL++G +P+   ++    + E   N   LR A++R  ++S + +   VKL ++
Sbjct: 236 DYISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEVT 295

Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEV 341
              +   V++P++GK  E +  V      + I FN  YL+E +    ++ V
Sbjct: 296 ESSVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKAFKNETV 346


>gi|73748915|ref|YP_308154.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1]
 gi|73660631|emb|CAI83238.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 174/393 (44%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  GS T+ A LL + V  L  D   +S    N     +NI        +      +FP
Sbjct: 61  IEEEGSTTIPAKLLTEFVSSLPNDKIDLSL---NAKSKALNIKCARFEARITGVDSKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   S +++    +  V    FA A +E R  L G+        L L A   DG 
Sbjct: 118 PIPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTLAAA--DGF 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236
           RLAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ 
Sbjct: 176 RLAVYKLPLLESVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIE 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290
           +  +L+ G FP Y  +IP S    + V+      A    +I +      V+L +      
Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDT 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  KL ++  + ++G     ++         I FN KYLL+++  + +      +V   +
Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S +S   I+    D         N  +V+MPM
Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|290579528|ref|YP_003483920.1| putative DNA polymerase III subunit beta [Streptococcus mutans
           NN2025]
 gi|254996427|dbj|BAH87028.1| putative DNA polymerase III beta subunit [Streptococcus mutans
           NN2025]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 175/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ +   L+ L    R I  KN IP+   + ++ N   + +  S  +I I   I A 
Sbjct: 2   IKFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAE 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   G+I + A+   +IV  L D   I+  F+E E   +V ++ G S   L+ 
Sbjct: 62  EENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIE-QHQVVLNSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171
               ++P  +E        L +++LK ++  T FA +T+E R  L G+   + N ++ K 
Sbjct: 118 KDVEQYPRLQEVGTNNPLILETNLLKTIISETAFAASTQESRPILTGVHLVLTNHKEFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ +         +++P +++ E   + +    SV+V  S S+I   
Sbjct: 177 -AVATDSHRMSQRKLTLDHSSDDF-DVVIPSRSLREFATVFTDDIESVEVFFSNSQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S + +   VKL +
Sbjct: 235 SEYISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++++   V++P++GK  E +++   +   + I FN  YL+E +  + S+ V 
Sbjct: 295 INNQVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKSETVT 347


>gi|289432911|ref|YP_003462784.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT]
 gi|288946631|gb|ADC74328.1| DNA polymerase III, beta subunit [Dehalococcoides sp. GT]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 174/393 (44%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  GS T+ A LL + V  L  D   +S    N     +NI        +      +FP
Sbjct: 61  IEEEGSTTIPAKLLTEFVSSLPNDKIDLSL---NAKSKALNIKCARFEARITGVDSKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   S +++    +  V    FA A +E R  L G+        L L A   DG 
Sbjct: 118 PIPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTLAAA--DGF 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236
           RLAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ 
Sbjct: 176 RLAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIE 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290
           +  +L+ G FP Y  +IP S    + V+      A    +I +      V+L +      
Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDT 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  KL ++  + ++G     ++         I FN KYLL+++  + +      +V   +
Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S +S   I+    D         N  +V+MPM
Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|319940208|ref|ZP_08014561.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV]
 gi|319810679|gb|EFW07009.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 176/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   INFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISI 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    ++V  L D   I+  FKE +   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLVTSSGSILLEATFFINVVSSLPD---ITLDFKEID-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L +SVLKN++  T FA +T+E R  L G+ F + E    L
Sbjct: 117 GKDADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENK-NL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HR++  ++ I+ +      +++P +++ E   + +    +V++  + +++   
Sbjct: 176 KTVATDSHRMSQKQI-ILEKNGDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E++S   RL++G +P+   +IP      +  +  NLR A++R  ++S + +   VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +  +   V++P++G+  E ++    +   + I FN  YL++ +  I+S++V 
Sbjct: 295 INGVVSAHVNSPEVGRVNEEIDTESISGQDLTISFNPTYLIDSLKAINSEKVT 347


>gi|307711217|ref|ZP_07647639.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321]
 gi|307617179|gb|EFN96357.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 173/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V++P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVNSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|323350830|ref|ZP_08086489.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis VMC66]
 gi|322123004|gb|EFX94707.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis VMC66]
 gi|324989579|gb|EGC21525.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK353]
 gi|325686478|gb|EGD28507.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK72]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 167/350 (47%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      L +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGLTLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNQF-LKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|55820105|ref|YP_138547.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMG
           18311]
 gi|55736090|gb|AAV59732.1| beta subunit of DNA polymerase III [Streptococcus thermophilus LMG
           18311]
          Length = 378

 Score =  105 bits (262), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 178/351 (50%), Gaps = 16/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS
Sbjct: 2   IQFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A+   ++V  L D      F+E E   +V +    +   L+  
Sbjct: 62  EENAGLLITQPGSILLEANFFINVVSSLPDVTLT--FEEIE-QYQVLLKSAKTEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLC 172
              ++P  +E + +    + + +LK+++  T FA +T+E R  L G+ F + N +DLK  
Sbjct: 119 DAEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLSNHKDLK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++  ++ ++   A    +++P +++ E+  + S    ++++  S ++I    
Sbjct: 177 AVATDSHRMSQRQL-VLEHSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E++S   RL++G +P+   ++  S + E+    + LR A++R  ++S+  +   VKL + 
Sbjct: 236 ETISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEII 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
           +  +   V++P++GK  E ++V   +   + I FN  YL++ +  + S+ V
Sbjct: 296 NGNVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKSESV 346


>gi|319746184|gb|EFV98454.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 378

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 170/352 (48%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L  L    R I  KN IP+   V ++     + +  S  +I I   IPAS
Sbjct: 2   IHFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDTIILTGSNGQISIENTIPAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   GSI + A    +I+  L D   ++  F E E   ++ ++ G S   L+ 
Sbjct: 62  NENAGLLVTNPGSILLEAGFFINIISSLPD---VTLEFTEIE-QHQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P  +E        L + +LK+++  T FA + +E R  L G+   I++      
Sbjct: 118 KDVDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNKY-FK 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++     +  + A    ++VP K++ E   + +    +V+V  S+S++    
Sbjct: 177 AVATDSHRMSQRTFQL-EKSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           E++S   RL++G +P+   ++    + E+  N   LR A++R  ++S + +   V+L + 
Sbjct: 236 ENISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQ 295

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ +   V++P++GK  E ++ V      ++I FN  YL+E +  + S+ V 
Sbjct: 296 NETVSAYVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKSETVT 347


>gi|308175816|ref|YP_003915222.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117]
 gi|307743279|emb|CBT74251.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117]
          Length = 375

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 95/388 (24%), Positives = 189/388 (48%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +VE+  + + +    R + ++   PV   +L+ +++GL+ ++    EI     IPA 
Sbjct: 1   MKFSVEKDVLADAVSWTARSLAQRPPSPVLAGILITSHEGLVRLEGFDYEISSHIEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI VS  LL +I R L +    S       GT+++++ G S F+L + P  E+P+
Sbjct: 61  ISEQGSILVSGKLLAEITRSLPN----STVTIETDGTKISLNCGRSRFHLATMPVDEYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +    +        V +   A + ++    L GI   I E DL +  +ATD +R
Sbjct: 117 LPELPAIAG-TIDGQAFSEAVSQVIVAASKDDTLPVLTGIKVEI-ENDL-ITFLATDRYR 173

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E++     +++  S ++  K + E+ + LS+    +K++L E+   +  ES +   
Sbjct: 174 LALRELNWSPNKSEISTSFLIKAKTLSEVAKTLSNS-GELKLALGENGEMVGFESSNRRT 232

Query: 240 R--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              LI+GE+P  +++ P        V  + L +AV RVS+++  R   V+++ +  +L +
Sbjct: 233 TSLLINGEYPKIRSLFPSDTPIHATVRTSELMEAVRRVSVVAE-RNTPVRMAFTDGQLTL 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E++        + + FN  +L E +++ ++     D V F   S+    
Sbjct: 292 DAGTGEDAQAEEAIVAALRGEDIVVAFNPTFLSEGLNSFNT-----DFVRFSFTSAPKPA 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + G+ K  ++++D      Y++MP+R+
Sbjct: 347 MLTGQKKLDEDDQDQYR---YLVMPVRL 371


>gi|167751446|ref|ZP_02423573.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702]
 gi|167655692|gb|EDR99821.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702]
          Length = 365

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 182/352 (51%), Gaps = 29/352 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58
           +K +V+++DIL+ L    +    K+ I      H+ L  N    ++  +G ++E+   I 
Sbjct: 2   IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGN----QLTVTGYDLEL--GIK 55

Query: 59  ASVDVCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +++DV G     + +++ L+ DIVRK+  G  +  F E E   ++N+   D  + +    
Sbjct: 56  STIDVEGESDGVLVLNSRLICDIVRKMPSG--VIRFDEYE-PLKLNLMCEDITYSIMGIN 112

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             E+P   E     SFE++  +LK+++ +T +A+AT + +  L G  F I   +L + +V
Sbjct: 113 SEEYPVLPELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIE 233
             DG R+A+ +  ++ +       +VP K + E+LR+LS  +S +  VS+  ++   +I+
Sbjct: 173 --DGIRIAIRKESLLHEDFDF---VVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSID 227

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292
             ++  RL++G+F NY  +I   ++ E  VN   L + VDR  ++ + +I++ V  + S 
Sbjct: 228 KYTVFSRLLEGDFFNYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSD 287

Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + L   C T     +GK  + +   Y+     I FN +Y+L+ + N   D+V
Sbjct: 288 NTLRVFCETA----IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKV 335


>gi|309799271|ref|ZP_07693519.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302]
 gi|308117116|gb|EFO54544.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302]
          Length = 378

 Score =  105 bits (261), Expect = 1e-20,   Method: Compositional matrix adjust.
 Identities = 87/354 (24%), Positives = 174/354 (49%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   ++  GS+ + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNENAGLLINSLGSVLLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLK 170
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F + N ++LK
Sbjct: 117 GKDSEQYPRIQEIAASNPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSNHKELK 176

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I  
Sbjct: 177 --TVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLS 289
             E++S   RL++G +P+   +IP   +  +  +   LRQ+++R  ++SS      VKL 
Sbjct: 234 RSENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVAKLRQSMERARLLSSATQNGTVKLE 293

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           +    +   V +P++GK  E ++    +   + I FN  YL+E +  ++S++V 
Sbjct: 294 IKEGIVSAHVHSPEVGKVNEEIDTENVSGADLTISFNPTYLIEALKALNSEKVT 347


>gi|322388481|ref|ZP_08062084.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           infantis ATCC 700779]
 gi|321140794|gb|EFX36296.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           infantis ATCC 700779]
          Length = 378

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 176/353 (49%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IPV   + +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQSLNITKRAISSKNAIPVLSTIKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KDENAGLLINSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QHQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLK 170
                ++P  +E        L + +LK ++  T FA + +E R  L G+ F + N ++LK
Sbjct: 117 GKDSEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLSNHKELK 176

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I  
Sbjct: 177 --TVATDSHRLSQKKLTLEKNSDNF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLS 289
             E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL 
Sbjct: 234 RSENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERARLLSSATQNGTVKLE 293

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +    +   V++P++GK  E ++ +  +   + I FN  YL+E +  ++S++V
Sbjct: 294 IKQGVVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEKV 346


>gi|255994572|ref|ZP_05427707.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989]
 gi|255993285|gb|EEU03374.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989]
          Length = 363

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/341 (25%), Positives = 173/341 (50%), Gaps = 8/341 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T  + DI E L    + I  + T+P+   +L++A +  + IK +  EI I   +   
Sbjct: 1   MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLKIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V+A L Y+I+RKL +G  I FF +     +++I + +S F L+   E +FP 
Sbjct: 61  NDEVGKIIVNAKLFYEIIRKLPEG-NIEFFTDE--SKKLHIKNLNSEFELEYLEEEKFPF 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            KE +    F     +L N+++++   ++ E  +  L G++  IN+  + L  V +DG+R
Sbjct: 118 AKEVKG-EKFSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISL--VGSDGYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ + +I+ +  K   I+VP + +  I +IL  +  +V++ + E  I   ++   + ++
Sbjct: 175 IAITKENIINEQEK--DILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLK 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G + +Y+         E+ +N  +L  AV+R+ ++S  +     +    + L     
Sbjct: 233 LLEGTYIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIET 292

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + D+G A E + +       +   N K+LL+ I NI  +E+
Sbjct: 293 SSDIGYAKEEIILDKMGEDNEFAINCKFLLDAIKNIDGEEL 333


>gi|24378534|ref|NP_720489.1| DNA polymerase III subunit beta [Streptococcus mutans UA159]
 gi|24376382|gb|AAN57795.1|AE014853_2 putative DNA polymerase III, beta subunit [Streptococcus mutans
           UA159]
          Length = 378

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/353 (25%), Positives = 174/353 (49%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ +   L+ L    R I  KN IP+   + ++ N   + +  S  +I I   I A 
Sbjct: 2   IKFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAE 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   G+I + A+   +IV  L D   I+  F+E E   +V ++ G S   L+ 
Sbjct: 62  EENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIE-QHQVVLNSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171
               ++P  +E        L + +LK ++  T FA +T+E R  L G+   + N ++ K 
Sbjct: 118 KDVEQYPRLQEVGTNNPLILETKLLKTIISETAFAASTQESRPILTGVHLVLTNHKEFK- 176

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            AVATD HR++  ++ +         +++P +++ E   + +    SV+V  S S+I   
Sbjct: 177 -AVATDSHRMSQRKLTLDHSSDDF-DVVIPSRSLREFAAVFTDDIESVEVFFSNSQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S + +   VKL +
Sbjct: 235 SEYISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++++   V++P++GK  E +++   +   + I FN  YL+E +  + S+ V 
Sbjct: 295 INNQVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKSETVT 347


>gi|22536187|ref|NP_687038.1| DNA polymerase III subunit beta [Streptococcus agalactiae 2603V/R]
 gi|25010077|ref|NP_734472.1| DNA polymerase III subunit beta [Streptococcus agalactiae NEM316]
 gi|76787013|ref|YP_328729.1| DNA polymerase III subunit beta [Streptococcus agalactiae A909]
 gi|76797975|ref|ZP_00780234.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21]
 gi|77405619|ref|ZP_00782708.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B]
 gi|77407693|ref|ZP_00784448.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1]
 gi|77411784|ref|ZP_00788120.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111]
 gi|77413651|ref|ZP_00789836.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515]
 gi|22533004|gb|AAM98910.1|AE014191_2 DNA polymerase III, beta subunit [Streptococcus agalactiae 2603V/R]
 gi|23094428|emb|CAD45647.1| beta subunit of DNA polymerase III [Streptococcus agalactiae
           NEM316]
 gi|76562070|gb|ABA44654.1| DNA polymerase III, beta subunit [Streptococcus agalactiae A909]
 gi|76586655|gb|EAO63154.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21]
 gi|77160306|gb|EAO71432.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515]
 gi|77162175|gb|EAO73150.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111]
 gi|77173692|gb|EAO76806.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1]
 gi|77175763|gb|EAO78543.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B]
          Length = 378

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 170/352 (48%), Gaps = 16/352 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L  L    R I  KN IP+   V ++     + +  S  +I I   IPAS
Sbjct: 2   IHFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDAIILTGSNGQISIENTIPAS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  V   GSI + A    +I+  L D   ++  F E E   ++ ++ G S   L+ 
Sbjct: 62  NENAGLLVTNPGSILLEAGFFINIISSLPD---VTLEFTEIE-QHQIVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P  +E        L + +LK+++  T FA + +E R  L G+   I++      
Sbjct: 118 KDVDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNKY-FK 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++     +  + A    ++VP K++ E   + +    +V+V  S+S++    
Sbjct: 177 AVATDSHRMSQRTFQL-EKSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           E++S   RL++G +P+   ++    + E+  N   LR A++R  ++S + +   V+L + 
Sbjct: 236 ENISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQ 295

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ +   V++P++GK  E ++ V      ++I FN  YL+E +  + S+ V 
Sbjct: 296 NETVSAHVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKSETVT 347


>gi|307707900|ref|ZP_07644375.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261]
 gi|307615965|gb|EFN95163.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261]
          Length = 378

 Score =  105 bits (261), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KGGIVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|21672842|ref|NP_660907.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS]
 gi|21645890|gb|AAM71249.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS]
          Length = 374

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 177/356 (49%), Gaps = 23/356 (6%)

Query: 35  LQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94
           L   +G+L + A+  E+ IT     +    G+I + A  L D +R + +   ++F  E +
Sbjct: 35  LTLENGMLTMFATDGELSITTNCDVASTDKGNIAIRARTLQDFLRSMYE-TDVTFDIERQ 93

Query: 95  LGTEVNISH--GDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
              E+   H   D   Y      +  P +++  +  S EL  + L++++ +T FA + + 
Sbjct: 94  SIGELGTIHIATDKGRYRIPCTFTTKPESQKRNFDLSIELQQNELQDMIHKTLFACSVDG 153

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
           +R  + G+ F  +EE   + AV+TDGHRL          +A+   I+VP + +  I R+L
Sbjct: 154 MRPAMMGVLFEFDEE--YITAVSTDGHRLVRCRKKPGVTVAEKQKIVVPARVLSIIQRML 211

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           ++++  VK+++   R ++  ++ +M +   LI   +PNY+ VIP  N+K+L  + + L  
Sbjct: 212 TNEE--VKMTIDSERRNVKFKTATMELESALIVEPYPNYEAVIPVENEKQLVTDRSQLHD 269

Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYL 329
           +V RV   SS  I  +K+S    ++ +  +N   G+ A E +   +    + I FN K++
Sbjct: 270 SVKRVGRFSS--IGDLKISAQDSQIKVMAENASEGESAQEELPCTFTGEEITIGFNAKFV 327

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + +I +     ++V   + S  ++V  + K ++ ++      +   ++MP+RI
Sbjct: 328 EAALSHIET-----EQVSIEMSSPTTAVLFKPKYEERQD------DLIILVMPVRI 372


>gi|147669676|ref|YP_001214494.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1]
 gi|146270624|gb|ABQ17616.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1]
          Length = 378

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 174/393 (44%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  GS T+ A LL + V  L  D   +S    N     +NI        +      +FP
Sbjct: 61  IEEEGSTTIPAKLLTEFVSSLPNDKIDLSL---NAKSKALNIKCARFEARITGVDSKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   S +++    +  V    FA A +E R  L G+        L L A   DG 
Sbjct: 118 PIPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTLAAA--DGF 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLS 236
           RLAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ 
Sbjct: 176 RLAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIE 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------ 290
           +  +L+ G FP Y  +IP S    + ++      A    +I +      V+L +      
Sbjct: 236 LVSQLVQGNFPQYNQIIPQSFTTRVVIDANQFLMATKTATIFARDGGGIVRLMMNPGGDT 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  KL ++  + ++G     ++         I FN KYLL+++  + +      +V   +
Sbjct: 296 TPGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKA-----QQVALEV 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S +S   I+    D         N  +V+MPM
Sbjct: 351 TSPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|225016759|ref|ZP_03705951.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum
           DSM 5476]
 gi|224950427|gb|EEG31636.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum
           DSM 5476]
          Length = 340

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/314 (25%), Positives = 158/314 (50%), Gaps = 10/314 (3%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           +LL+  +  L++     ++ IT  I       G+I ++A L  DI+RK+ D  QI+   +
Sbjct: 4   ILLECENNNLKLTGYDLDLGITKTIQVETVEPGAIVLNARLFSDILRKMPD-EQITITSD 62

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
            +L T   I   D+ F +      E+P     +    F     +LKN++ +T FA++  +
Sbjct: 63  QKLLTR--IEGIDTEFNILGMSRDEYPDMPAVDDSQGFTAPDYLLKNMINQTLFAISVND 120

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
               L G  F +N    K+  V+ DG+R+A+ + +I +      S +VP K + EI ++L
Sbjct: 121 QTPVLTGSLFDLNSG--KMSVVSVDGYRVALRKENIASDTDV--SFVVPGKTLAEITKLL 176

Query: 213 SSKDSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
           S ++ ++ +VS+    I   I   ++  RL++GE+ +Y++ IP  +   +  +   + Q+
Sbjct: 177 SDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVVQS 236

Query: 272 VDRVSIMSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330
           ++R SI+ + R ++ VKL      + +T ++  +GK  +         P+ I FN KY++
Sbjct: 237 IERTSIIINDRNKSPVKLVTEGSTINLTCEST-IGKVSDRFEATVEGDPIRIAFNNKYMI 295

Query: 331 EIIDNISSDEVVDD 344
           + + +   D++  D
Sbjct: 296 DALKHTECDQIYID 309


>gi|193214558|ref|YP_001995757.1| DNA polymerase III subunit beta [Chloroherpeton thalassium ATCC
           35110]
 gi|193088035|gb|ACF13310.1| DNA polymerase III, beta subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 377

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/327 (26%), Positives = 161/327 (49%), Gaps = 20/327 (6%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN--ISHGDSNFYLQSFPESEFPST 121
            G+ +++A    D++R + D        E E   +++  I     ++ + +    E  S 
Sbjct: 64  SGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFEEESA 123

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              ++  +F ++   L  L+++T FA +T+ +R  + G+ F I  E ++  AV+TDGHRL
Sbjct: 124 GSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIR--AVSTDGHRL 181

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSMSV 239
                +          IIVP + +G I+R L S+D  V++S+  +  RI   +    +  
Sbjct: 182 VKITRNHNTGAEGKLKIIVPSRVLG-IVRKLFSEDGDVEISIDANSQRIRFRMGETILLC 240

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+   +PNY+ VIP  NDK + +N +NL  +V RV   SS     V+  +  + L ++ 
Sbjct: 241 SLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSSR--GDVRFHVQENSLAVSA 298

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +N D G  A ES+   Y +  + I FN K++ + + ++++     +EV+F+  S   +  
Sbjct: 299 ENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNA-----EEVIFQFSSPTRAAI 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  K ++  N      +   ++MP+RI
Sbjct: 354 ILPKQEEDANE-----DVLMLVMPVRI 375


>gi|78187986|ref|YP_378324.1| DNA polymerase III, beta chain [Chlorobium chlorochromatii CaD3]
 gi|78170185|gb|ABB27281.1| DNA polymerase III, beta subunit [Chlorobium chlorochromatii CaD3]
          Length = 374

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 166/357 (46%), Gaps = 21/357 (5%)

Query: 32  HVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK 91
           H  L+ N   L +  +  E+ IT  I       G I ++A  L D +R + D       +
Sbjct: 34  HFTLEPN--ALTLFGTDGELSITAKIEVESTDSGHIGINARTLQDFLRSMYDTPVTLSIE 91

Query: 92  ENELGTE--VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149
             E+     V ++     + +    ES+ P   ++ Y  + +L +S L  LV++T FA +
Sbjct: 92  RQEISDHGMVEVTTDKGRYKIVCLFESK-PERYDKVYDITLDLPTSELLGLVQKTLFACS 150

Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209
            + +R  + G+ F +  E   + AVATDGHRL     +    IA+   I++P + +  + 
Sbjct: 151 IDGMRPAMMGVLFEL--EGTTITAVATDGHRLVRCRKESSLDIAEKQKIVLPARVLSILQ 208

Query: 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           ++   +  ++ VS     +      + +   LI   +PNY  VIP  +DK + +N  +  
Sbjct: 209 KLAQHESITMCVSTDRRFVRFISGHMILDAALIVEPYPNYNAVIPVEHDKNVVINRQSFY 268

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKY 328
            +V RV   SS  I  ++L L +D+L +  +N   G+A  E +   YN  PM I FN K+
Sbjct: 269 DSVRRVGRFSS--IDDIRLILENDRLTVMAENTSDGEAAQEELPCSYNGEPMTIGFNAKF 326

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + ++      D+E++  L S  ++V        + +  +++     ++MP+RI
Sbjct: 327 VEAALAHLD-----DEEILIELKSPTTAVIF------TSSKIEDRDKLIILVMPVRI 372


>gi|331693901|ref|YP_004330140.1| DNA polymerase III subunit beta [Pseudonocardia dioxanivorans
           CB1190]
 gi|326948590|gb|AEA22287.1| DNA polymerase III, beta subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 376

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 175/394 (44%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK  VER  + +      R +  +  +PV   VL++   + G   +  SG + E +  + 
Sbjct: 1   MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIEGGGDPGAETLTVSGFDYETSARVE 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSF 113
             A+V   G + VS  LL DI R L         K  +L   G+   I+ G+S F L + 
Sbjct: 61  LDATVGDPGQVLVSGRLLADITRALPS-------KPVDLVVDGSRATINCGNSRFSLPTM 113

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  ++P         +  +A+ VL + V +   A   ++    L G+   I  E  +L  
Sbjct: 114 PVEDYPQLPAMPQ-RAGSVAADVLASAVAQVAVAAGRDDTLPMLTGVRLEI--EGSRLTL 170

Query: 174 VATDGHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLN 231
            ATD  RLAV E+D   +  +   ++++P + + ++ + LS   +  + +S  +  + + 
Sbjct: 171 AATDRFRLAVRELDWEPEDPSASTAVLIPARTLADVAKALSGSGTVEIALSAGDGMLGMT 230

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL+D EFP ++ +IP  +     +    L +A+ RV++++  R+  ++L   
Sbjct: 231 GSGRRATTRLLDAEFPRFRQLIPAESTTNAEIEVATLVEAIKRVALVAD-RVAQIRLEFG 289

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            D L +     D+G A E +       P+ I FN  YLL+ +  + ++ V   ++ F   
Sbjct: 290 EDGLRLAAGGDDVGSAEEEIPCALQGEPLTIAFNPSYLLDALGALHTERV---QLSF--T 344

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + N     R    D   N        ++LMP+R+
Sbjct: 345 TPNRPALARPVVADDAANP----GYLHLLMPVRL 374


>gi|293364517|ref|ZP_06611242.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis
           ATCC 35037]
 gi|306826188|ref|ZP_07459523.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|307702807|ref|ZP_07639757.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037]
 gi|315612158|ref|ZP_07887073.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331265440|ref|YP_004325070.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5]
 gi|291317025|gb|EFE57453.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis
           ATCC 35037]
 gi|304431664|gb|EFM34645.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|307623663|gb|EFO02650.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037]
 gi|315315719|gb|EFU63756.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326682112|emb|CBY99728.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5]
          Length = 378

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KGGVVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNSEKVT 347


>gi|324991865|gb|EGC23788.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK405]
 gi|324996245|gb|EGC28155.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK678]
 gi|325698031|gb|EGD39912.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK160]
 gi|327458489|gb|EGF04839.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1]
 gi|327471609|gb|EGF17052.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK408]
          Length = 378

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 169/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+  +V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSNVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|298376463|ref|ZP_06986418.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
 gi|298266341|gb|EFI07999.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
          Length = 370

 Score =  104 bits (260), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 103/388 (26%), Positives = 171/388 (44%), Gaps = 22/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I++ ++ +L  L    +II  K++ P+ CH L +  +G L I  S  E  IT ++   
Sbjct: 1   MTISISKTALLSRLQLLAKIIPAKSSTPILCHFLFKTREGRLFITGSNSEGRITTSLECI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   SI V   LL  +    +    I   K+     E+ I +    F +  +  S +P 
Sbjct: 61  FDEEISICVPTSLLEGLRNLPEQPIDIIINKDTR---EIRIKYHGGKFEVVGYDPSTYPG 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  E + S  L++  L N + +       ++IR  L+ +F     E   +C V  DGH 
Sbjct: 118 KRSIEVLDSVSLSAEDLFNGISKVINLAGNDDIRPVLSSVFIETEPE--TVCFVGADGHG 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLSMS 238
           +         Q+ K+ S+I+ R     +  IL  SS +  ++V    S + LN     +S
Sbjct: 176 MGFLRKGNDRQVGKI-SVIISRPIASVLKAILPASSDNMEMRVGADWSDVILN--DYEIS 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R ++G +PN++ V+P +N  EL V+   L  A+ R S+ S+     + L +  DKL + 
Sbjct: 233 FRNVEGRYPNWKAVVPKANKLELLVDTGQLIGAIKRTSVFSNKASCLIVLRIIRDKLTVF 292

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++ V +N     I      LLEI+  I       D+   RL  S  S 
Sbjct: 293 AQDIDFSTSAEETLEVDFNGNEFSIGIKGSLLLEILSCI-------DDGRTRLSFSEPSR 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I    ++   N++      Y+LMPM I
Sbjct: 346 AILITPENQSGNEE----LTYLLMPMTI 369


>gi|206972508|ref|ZP_03233452.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
 gi|206732532|gb|EDZ49710.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
          Length = 376

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTIFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   I
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|322377904|ref|ZP_08052392.1| DNA polymerase III, beta subunit [Streptococcus sp. M334]
 gi|321281080|gb|EFX58092.1| DNA polymerase III, beta subunit [Streptococcus sp. M334]
          Length = 378

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|229150900|ref|ZP_04279111.1| DNA polymerase III, beta subunit [Bacillus cereus m1550]
 gi|228632460|gb|EEK89078.1| DNA polymerase III, beta subunit [Bacillus cereus m1550]
          Length = 376

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 180/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++       N   +GK  E+  +     E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   +K +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEKSA---------AVHLISPVR 374


>gi|284928718|ref|YP_003421240.1| DNA polymerase III subunit beta [cyanobacterium UCYN-A]
 gi|284809177|gb|ADB94882.1| DNA polymerase III, beta subunit [cyanobacterium UCYN-A]
          Length = 391

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 87/364 (23%), Positives = 172/364 (47%), Gaps = 28/364 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++D    L    R +  + T P+  +VL+ A+  +++ K S    +++  I  S
Sbjct: 1   MKFVCSQNDFSNNLSLVSRAVPTRPTHPILANVLMVAD--IVKQKISLTAFDLSLGIETS 58

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSF 113
            D      G  T+ A LL DIV +L +G +IS   E     + N+ +       F +++ 
Sbjct: 59  FDANISEGGQTTLPAKLLNDIVSRLPEG-EISLISEETKDNQTNLLYLKSASGKFQIRTI 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              EFP     E     EL +  +   +    FA + +E++  L G+      + L+  A
Sbjct: 118 SADEFPPLPMIENDDFIELPTITITEGLRGVLFASSNDELKQVLTGVHLKGTADSLEFAA 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMP------------SIIVPRKAVGEILRILSSKD--SSV 219
             TDGHRL+V E    ++I                S+ +P KA+ E+ +I+ + +    +
Sbjct: 178 --TDGHRLSVVEAMFSSEIDNKKEQTLKTKNSNEFSVTIPAKALRELEKIIHNNNDFEVI 235

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           ++ + + ++   +    +++R +DG +P Y  +IP   +  + ++  N   +++RV++++
Sbjct: 236 QLQIDDLQVIFYLGKQKLTIRKLDGNYPKYSMLIPQKFEHVISLDRKNFLNSLERVAVLA 295

Query: 280 SVRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           S +   VK   ++ K  + ++V+  D+G A ES+         DI FN KYL++ +  +S
Sbjct: 296 SQKNNLVKCVFNNKKQIILLSVETQDLGSAEESIEAKITGESGDIAFNIKYLMDGLKALS 355

Query: 338 SDEV 341
           + E+
Sbjct: 356 TKEI 359


>gi|229070157|ref|ZP_04203421.1| DNA polymerase III, beta subunit [Bacillus cereus F65185]
 gi|228712975|gb|EEL64886.1| DNA polymerase III, beta subunit [Bacillus cereus F65185]
          Length = 376

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QTIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|229178968|ref|ZP_04306326.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W]
 gi|228604525|gb|EEK61988.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W]
          Length = 376

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 81/288 (28%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   I
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|254414533|ref|ZP_05028299.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
 gi|196178763|gb|EDX73761.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
          Length = 400

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 95/415 (22%), Positives = 198/415 (47%), Gaps = 47/415 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+T  +S++   L    R +  + T PV  +VLL+A+  +  + + A    + +  +  
Sbjct: 1   MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLKADAENQRVSLTAFDLSLGLQTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFF-----KENELGTE---VNISHGDSNFYL 110
           A+V+  G+I + A L  DIV +L +G  I+        E++  TE   + ++     + +
Sbjct: 61  ANVEADGAIAIPAKLFNDIVSRLPEG-DITLEDSLSEAESDADTESLSITLTSTSGQYKM 119

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           +     +FP   + E     +L    L   +  + FA + +E +  L G+   + E+ L+
Sbjct: 120 RGMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSLE 179

Query: 171 LCAVATDGHRLAVAEV-------DIVAQIAKMPS---------IIVPRKAVGEILRILSS 214
             A  TDGHRLAV E        +   +  + P+         + VP + + E+ R+L  
Sbjct: 180 FAA--TDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGL 237

Query: 215 KDSSVKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
            +SS  V+L     +I     +  ++ R ++G++P Y+ +IP    +++ +    L  AV
Sbjct: 238 SESSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAV 297

Query: 273 DRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330
           +R+++++  +   VK  +   +  + +TV+  D+G A ES++       ++I FN KYL+
Sbjct: 298 ERIAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLI 357

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  +S+      ++ F+++++N+ V +              +   Y++MP++I
Sbjct: 358 DGLKALST-----SDIQFQMNAANTPVIL---------TPLGGLKMTYLIMPVQI 398


>gi|322386431|ref|ZP_08060060.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321269517|gb|EFX52448.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 378

 Score =  104 bits (259), Expect = 2e-20,   Method: Compositional matrix adjust.
 Identities = 84/350 (24%), Positives = 167/350 (47%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISTKNAIPILSTVKIDVTKEGITLIGSNGQISIENFISVQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   GSI + A+   +++  L D   +  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVTSPGSILLEANFFINVISSLPD--IVLDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + VLKN++  T FA +T+E R  L G+ F + +    L  
Sbjct: 119 DADQYPRIQEVSTSNPLVLETKVLKNIINETAFAASTQESRPILTGVHFVLTDNQ-SLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +  +      +++P +++ E   + + +  +V+V  + +++    E
Sbjct: 178 VATDSHRMSQKKITLDKKGDDF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQLLFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      +  N  NLR A++R  ++S + +   VKL +  
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFSSVVTFNTNNLRHAMERSRLLSNATQNGTVKLEIVK 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V +P++G+  E ++    +   + I FN  YL+E +  + S++V
Sbjct: 297 GIVSAHVHSPEVGRVNEEIDTESVSGEDLTISFNPTYLIEALKAVDSEKV 346


>gi|317123179|ref|YP_004097291.1| DNA polymerase III subunit beta [Intrasporangium calvum DSM 43043]
 gi|315587267|gb|ADU46564.1| DNA polymerase III, beta subunit [Intrasporangium calvum DSM 43043]
          Length = 375

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +  +PV   VLL+A  DG L + A   E+     +PA
Sbjct: 1   MKFRVERDVLAEAVTWVARGVPARPPVPVLAGVLLEAAEDGTLTLSAFDYEVSARITVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G + V   LL +I R L     I    +   GT++N++ G S F L+  P +++P
Sbjct: 61  DVAEAGQVLVLGRLLAEISRNLP-AKPIDISTD---GTKLNVTCGSSRFSLREMPVADYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        S  +A  V    V +   A    +    L G+   +  E  K+  +ATD +
Sbjct: 117 TLPAAPE-PSGTIAGDVFTQAVAQVSIAADRGDTLPILTGVRMEV--EGDKIVLLATDRY 173

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES--LS 236
           RLA+ E+    A  A     ++P + + E  + L +  S            +  E+    
Sbjct: 174 RLAMRELTWSPASPAASHVALIPARQLSETAKALGASGSVQIALGGGGDGLIGFEAGQRQ 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + RL+DGE+P   ++ P S D E  +    L +AV RV++++  R   V L  +  ++ 
Sbjct: 234 ATTRLLDGEYPKVTSIFPSSVDTEAVIETAALEEAVKRVALVAE-RNTPVLLKFTDGQVA 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A E++    +   + I FN +YLL+ +  +         + F    S  +
Sbjct: 293 IEAGTGDDAQASEAVEAVLHGPEIQIAFNPQYLLDGLHAVGQPW---SRLSF-TQPSRPA 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V     + DS  +   +    YVLMP+R
Sbjct: 349 VLTGQAEADSDTDASYR----YVLMPVR 372


>gi|296167142|ref|ZP_06849549.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897464|gb|EFG77063.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 399

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 95/401 (23%), Positives = 173/401 (43%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A 
Sbjct: 13  LKFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLSGSDEGLTISGFDYEVSAEAQVAAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DI R L +   + F+ +   G  V ++ G + F L +    ++P+
Sbjct: 73  IASPGSVLVSGRLLSDITRALPN-KPVDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 128

Query: 121 TK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                EE   +  L + +    + +   A   ++    L GI   I+   + L   ATD 
Sbjct: 129 LPVLPEE---TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGNTVVLA--ATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230
            RLAV E+   A    +  +++VP K + E  R   +  S V++SL        +  + +
Sbjct: 184 FRLAVRELTWAASSPDIEAAVLVPAKTLAEAARA-GADGSEVRLSLGAGSGVGKDGLLGI 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           +      + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  
Sbjct: 243 SGNGKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVAD-RGAQVRMEF 301

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S   L ++    D+G+A E + V +   P+ I FN  YL + +  + S     + V F  
Sbjct: 302 SEGSLRLSAGADDVGRAEEDLAVDFVGEPLTIAFNPTYLTDGLAAVHS-----ERVSFGF 356

Query: 351 DSSNSSVFIR-GKDKDSKNNKDNKVNAF-----YVLMPMRI 385
            +      +R     DS    D    A      Y+LMP+R+
Sbjct: 357 TTPGKPALLRPASADDSPPTGDGPFAALPTDYVYLLMPVRL 397


>gi|315222843|ref|ZP_07864728.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211]
 gi|315188079|gb|EFU21809.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211]
          Length = 378

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 176/352 (50%), Gaps = 18/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   INFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNG-QISIENFISI 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNENAGLLVTSSGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L +SVLKN++  T FA +T+E R  L G+ F + E    L
Sbjct: 117 GKDADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENK-NL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HR++  ++ ++ +      +++P +++ E   + +    +V++  + +++   
Sbjct: 176 KTVATDSHRMSQKKI-VLEKNGDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E++S   RL++G +P+   +IP      +  +  NLR A++R  ++S + +   VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
            +  +   V++P++G+  E ++    +   + I FN  YL++ +  I+S++V
Sbjct: 295 INGVVSAHVNSPEVGRVNEEIDTESISGQNLTISFNPTYLIDSLKAINSEKV 346


>gi|307705908|ref|ZP_07642746.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597]
 gi|307620569|gb|EFN99667.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597]
          Length = 378

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 86/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KDGIVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|229079875|ref|ZP_04212407.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2]
 gi|228703459|gb|EEL55913.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2]
          Length = 376

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QTIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELANNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|291558312|emb|CBL35429.1| DNA polymerase III, beta subunit [Eubacterium siraeum V10Sc8a]
          Length = 365

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 94/352 (26%), Positives = 182/352 (51%), Gaps = 29/352 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58
           +K +V+++DIL+ L    +    K+ I      H+ L  N    ++  +G ++E+   I 
Sbjct: 2   IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGN----QLTVTGYDLEL--GIK 55

Query: 59  ASVDVCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +++DV G     + +++ L+ DIVRK+  G  I  F E E   ++N+   D  + +    
Sbjct: 56  STIDVEGESDGVLVLNSRLICDIVRKMPSG--IIRFDEYE-PLKLNLMCEDITYSIMGIN 112

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             E+P   E     SFE++  +LK+++ +T +A+AT + +  L G  F I   +L + +V
Sbjct: 113 SEEYPVLPELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIE 233
             DG R+A+ +  ++ +       +VP K + E+LR+LS  +S +  VS+  ++   +I+
Sbjct: 173 --DGIRIAIRKESLLHEDFDF---VVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSID 227

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292
             ++  RL++G+F +Y  +I   ++ E  VN   L + VDR  ++ + +I++ V  + S 
Sbjct: 228 KYTVFSRLLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSD 287

Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + L   C T     +GK  + +   Y+     I FN +Y+L+ + N   D+V
Sbjct: 288 NTLRVFCETA----IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKV 335


>gi|193211678|ref|YP_001997631.1| DNA polymerase III subunit beta [Chlorobaculum parvum NCIB 8327]
 gi|193085155|gb|ACF10431.1| DNA polymerase III, beta subunit [Chlorobaculum parvum NCIB 8327]
          Length = 374

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/352 (25%), Positives = 172/352 (48%), Gaps = 23/352 (6%)

Query: 39  DGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE---- 94
           +G L + A+  E+ IT     +    G+I + A  L D +R + D  +++F  E +    
Sbjct: 39  NGTLTMFATDGELSITAKCDVASSDKGTIAIRARTLQDFLRSMYD-TEVTFEIERQSIGD 97

Query: 95  LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
           LGT V+I+     + +     S+ P + E  +  +  L  S L++++++T FA + + +R
Sbjct: 98  LGT-VHIATDKGRYRIPCTFISK-PESLERNFDLTIGLQPSELQDIIQKTLFACSVDGMR 155

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214
             + G+ F    E   + AVATDGHRL         +IA+   I+VP + +  I R+L +
Sbjct: 156 PAMMGVLFEF--EGTVITAVATDGHRLVRCRKQTTNEIAEKQKIVVPARVLSIIQRLLQN 213

Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
            + S+ V      +    E++ +   LI   +PNY+ VIP  N+K+L V+   +  +V R
Sbjct: 214 DEVSMTVDEERRNVKFKSENVELESALIVEPYPNYEAVIPVENEKKLVVDRGLIHDSVKR 273

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEII 333
           V   SS  I  +K+S   + + +  +N   G+ A E +   +    + I FN K++   +
Sbjct: 274 VGRFSS--IGDLKISAEGELMKVMAENASEGESAQEELPCTFTGEEITIGFNAKFVEAAL 331

Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +I +     ++V   + S  ++V  + K ++ ++      +   ++MP+RI
Sbjct: 332 SHIET-----EQVSMEMSSPTTAVLFKPKYEERQD------DLIILVMPVRI 372


>gi|228939801|ref|ZP_04102379.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972690|ref|ZP_04133290.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979275|ref|ZP_04139613.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407]
 gi|228780476|gb|EEM28705.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407]
 gi|228787055|gb|EEM35034.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819897|gb|EEM65944.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940453|gb|AEA16349.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 376

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280


>gi|150020433|ref|YP_001305787.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429]
 gi|149792954|gb|ABR30402.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429]
          Length = 366

 Score =  104 bits (259), Expect = 3e-20,   Method: Compositional matrix adjust.
 Identities = 90/325 (27%), Positives = 162/325 (49%), Gaps = 30/325 (9%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPSTKE 123
           G   V A LL +IV+ + D  QI F    ++G  V +  G S+F L +  E + FP  + 
Sbjct: 66  GKFAVDAKLLEEIVKNV-DTEQILF--SYDMGKLV-LKSGKSSFNLSTHSEPDKFPQIEL 121

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           EE    FEL +S+L  +++R  F  +TE     LNG+++      L+L  VA+DG+RLA+
Sbjct: 122 EESGIKFELETSILSEMIDRVLFCASTESAMRALNGVYWEAKGGYLRL--VASDGYRLAL 179

Query: 184 AE--VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240
            E  V+I A        I+  K++ E+  ++   D  +  V     ++ ++   +++ +R
Sbjct: 180 TEQKVNIDADF----DFILSLKSMKELDNLIKQTDEPILTVKFDHKKVWISAGDITVIMR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +++  FP+Y+ V+P      +  N     +A+ R+ I+S    + V+L ++ + L +   
Sbjct: 236 IVEEVFPDYKRVLPKVFKTRIIFNKEEFLEALKRIMIISKRGDEKVRLQINDNILVLNSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           +P+ G+  E +++      + I FN K+L E +  I      +DEVVF      S + I 
Sbjct: 296 SPEYGEVNEEISIEQEGEDLSINFNPKFLNEAVKKIE-----EDEVVFNFVDDLSPMQIN 350

Query: 361 GKDKDSKNNKDNKVNAF-YVLMPMR 384
            KD          VN + Y+++P+R
Sbjct: 351 SKD----------VNEYLYIVLPVR 365


>gi|289610241|emb|CBI60296.1| unnamed protein product [Sordaria macrospora]
          Length = 125

 Score =  103 bits (258), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 51/127 (40%), Positives = 76/127 (59%), Gaps = 3/127 (2%)

Query: 46  ASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105
           A+  +++I   I A++D  G+ITVSAH L+DI RKL +GAQ+     +     + +  G 
Sbjct: 2   ATDLDLQIDETIAAAIDQAGAITVSAHTLFDIARKLPEGAQVQL---SAAEGRLTVVAGR 58

Query: 106 SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165
           + F L + P  +FP   E E    FEL ++ LK ++++T FA++TEE RYYLNGIF H+ 
Sbjct: 59  ARFSLATLPRDDFPVIAEGELPTQFELPATTLKAIIDKTRFAISTEETRYYLNGIFLHVA 118

Query: 166 EEDLKLC 172
           E     C
Sbjct: 119 EMTASRC 125


>gi|125716889|ref|YP_001034022.1| DNA polymerase III subunit beta [Streptococcus sanguinis SK36]
 gi|125496806|gb|ABN43472.1| DNA polymerase III, beta chain, putative [Streptococcus sanguinis
           SK36]
          Length = 378

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEITG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|325689355|gb|EGD31361.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK115]
          Length = 378

 Score =  103 bits (258), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|194476875|ref|YP_002049054.1| DNA polymerase III subunit beta [Paulinella chromatophora]
 gi|171191882|gb|ACB42844.1| DNA polymerase III subunit beta [Paulinella chromatophora]
          Length = 394

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 97/412 (23%), Positives = 194/412 (47%), Gaps = 47/412 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T P+  +VLL AN   GLL +      + I  +I 
Sbjct: 1   MKLVCSQTELNTSLQLVSRAVATRPTHPILANVLLTANAETGLLSLTGFDLNLGIQISIS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF--FKENELGTEVNISHGDSNFYLQSFPES 116
           ASV+  G+IT+ + LL +IV +L +   I+    K  E    + ++     + ++S P +
Sbjct: 61  ASVETSGAITLPSRLLGEIVSRLSNEGPITISDMKGQE---RIELTSISGTYQMRSMPAA 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +FP            L +  L   +  T FA + +E +  L G+       +L+ CA AT
Sbjct: 118 DFPDLPLIVSGIPVRLEAEALIRGLRGTIFATSNDEAKQVLTGVHLCFTNHELE-CA-AT 175

Query: 177 DGHRLAVAEV------DIVAQIAKMP-----------SIIVPRKAVGEILRILSSKDSSV 219
           DGHRLAV  +      D++ +  ++            ++ +P +++ E+ R+LS   +  
Sbjct: 176 DGHRLAVLRLANAVTEDLLIKAEEIKETEEEDGIEDFAVTLPARSLKELERLLSGHPTKE 235

Query: 220 KVSLSESR---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            VSL  +R   + L    + ++ R +DG +P Y+ +IP    + + +    L  A++RV+
Sbjct: 236 AVSLFYNRGQAVFLWANQI-LTSRTLDGIYPAYKGLIPDHFTRSIALERKALISALERVA 294

Query: 277 IMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           +++      V+L     + +LC++ D  ++G   E M        ++I FN +Y+L+ + 
Sbjct: 295 VLAGQHNNVVRLEGDPMTRQLCISADAQEIGSGSEEMLAIITGGCIEIAFNVRYMLDGLK 354

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
            ++     D+ +    +SSN+   +              +++F Y++MP+++
Sbjct: 355 AMT-----DERIEILCNSSNTPAIL---------TPQGDMHSFMYLIMPIQV 392


>gi|332365095|gb|EGJ42860.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK355]
          Length = 378

 Score =  103 bits (257), Expect = 4e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NCSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|291531950|emb|CBK97535.1| DNA polymerase III, beta subunit [Eubacterium siraeum 70/3]
          Length = 365

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 93/352 (26%), Positives = 182/352 (51%), Gaps = 29/352 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58
           +K +V+++DIL+ L    +    K+ I      H+ L  N    ++  +G ++E+   I 
Sbjct: 2   IKFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGN----QLTVTGYDLEL--GIK 55

Query: 59  ASVDVCGS----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +++DV G     + +++ L+ DIVRK+  G  +  F E E   ++N+   D  + +    
Sbjct: 56  STIDVEGESDGVLVLNSRLICDIVRKMPSG--VIRFDEYE-PLKLNLMCEDITYSIMGIN 112

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             E+P   E     SFE++  +LK+++ +T +A+AT + +  L G  F I   +L + +V
Sbjct: 113 SEEYPVLPELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIE 233
             DG R+A+ +  ++ +       +VP K + E+LR+LS  +S +  VS+  ++   +I+
Sbjct: 173 --DGIRIAIRKESLLHEDFDF---VVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSID 227

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292
             ++  RL++G+F +Y  +I   ++ E  VN   L + VDR  ++ + +I++ V  + S 
Sbjct: 228 KYTVFSRLLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSD 287

Query: 293 DKL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + L   C T     +GK  + +   Y+     I FN +Y+L+ + N   D+V
Sbjct: 288 NTLRVFCETA----IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKV 335


>gi|325695761|gb|EGD37660.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK150]
 gi|332363607|gb|EGJ41388.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1059]
 gi|332364165|gb|EGJ41942.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK49]
          Length = 378

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|156740759|ref|YP_001430888.1| DNA polymerase III subunit beta [Roseiflexus castenholzii DSM
           13941]
 gi|156232087|gb|ABU56870.1| DNA polymerase III, beta subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 377

 Score =  103 bits (257), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 85/350 (24%), Positives = 167/350 (47%), Gaps = 13/350 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++  + ++   L      +  K+T+PV  ++L+ ++DG L++ A+  EI IT  I A 
Sbjct: 1   MKLSCLQENLKRGLAVVSHAVAGKSTLPVLSNILIASDDGRLKLAATNLEIGITCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++ V A LL D+V  L +  +I    +    T +N+        ++     EFP+
Sbjct: 61  IEEEGAVAVPAKLLSDVVGSLPND-RIDLTLDGRTQT-LNLKCARFESNIKGTESGEFPA 118

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +    +     ++L+  +++  FA +TEE R  L G+   +   D +    A DG 
Sbjct: 119 IPTVDNRTPTAVFPPTLLRETIQQVAFAASTEETRPVLQGVQLRL--RDNRAIFAAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK--VSLSESRIHLNIESLSM 237
           RLA   V++   +A+   +I+P +A+ E+ RIL+  +S V+  V+ S  ++  +  ++ +
Sbjct: 177 RLAQRIVELPEPVAQPQDLIIPARALNELARILNDDESQVEMIVTHSGGQVLFHTSTVDL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291
             RLIDG++P+   VIP        ++   L +AV   S  +     +V+L       L 
Sbjct: 237 VSRLIDGKYPDVDRVIPQQYQTRAVLDTQELTKAVKLASYFTVAPSNSVRLHMEPGGDLG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             ++ ++ +  D+G     ++         I  N K+L + I  I + ++
Sbjct: 297 PGRMTISANAVDVGDNKGQVDAMIEGEGGQIALNVKFLSDAIAAIPTPQL 346


>gi|228953017|ref|ZP_04115078.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806635|gb|EEM53193.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 376

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G++ V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKVGTMVVPAKYFIEIIKKMP--SDIAIKSKNE--QTIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|328945175|gb|EGG39330.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1087]
          Length = 378

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEITG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|194335184|ref|YP_002016978.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307661|gb|ACF42361.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 374

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 181/389 (46%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T     + + +G   + I  K   P   +V L    G L + A+  E+ IT      
Sbjct: 1   MKLTSSIRQLQDAIGKVAQAIPAKTIDPRFENVHLSIESGSLTLFATDGELSITAKSDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I V A  L D +R + D A ++F  E +  ++    H  ++      P  +F S
Sbjct: 61  TSDSGNIGVKARTLQDFLRSMYDTA-VTFVIERQEISDHGTLHITTDKGKYKIP-CQFES 118

Query: 121 TKEEE---YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            +E+    Y  S EL ++   +L+++T FA + + +R  + G+ F +  E   + AV+TD
Sbjct: 119 KQEKHEKTYDISLELETAEFLDLIQKTIFACSVDGMRPAMMGVLFEL--EGNTITAVSTD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRL     +  + I +   I++P + +  + ++   +  ++ +      +   I ++ +
Sbjct: 177 GHRLVRCRKNYNSAIGEKQKIVIPARVLSILQKLAQHEFITMSIDSDRRFVRFIIGNIVL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              LI   +PNY  VIP  +DK L ++ + +  +V RV   SS  I  VK+ +    L +
Sbjct: 237 DASLIIEPYPNYDAVIPVEHDKHLIIDRSMIYDSVRRVGRFSS--IGDVKMVIEGQLLKV 294

Query: 298 TVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
             +N + G+A  E M   Y    + I FN +++   + ++      D+E+   L S  ++
Sbjct: 295 MAENTNEGEAAQEEMPCLYTGDDITIGFNSRFIEAALAHLD-----DNEIRIELKSPTTA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V      K  K  +D+K+    ++MP+RI
Sbjct: 350 VIF----KPHKTEEDDKL--IVLVMPVRI 372


>gi|254413972|ref|ZP_05027740.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
 gi|196179108|gb|EDX74104.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
          Length = 391

 Score =  103 bits (256), Expect = 5e-20,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 184/405 (45%), Gaps = 36/405 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+T    D+   L  +CR +  + + P+  ++LL A  +   + + A    + I     
Sbjct: 1   MKLTCSSVDLQTHLSLSCRAVPSRPSHPILGNILLSACSDTQQIHLTAFNLSLGIKTRFL 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-------VNISHGDSNFYLQ 111
           A ++  G +T+ A L  DIV  L +G      +     TE       + ++H    +  +
Sbjct: 61  AHIETGGQVTIPAKLFQDIVSHLPEGDITVSVQPEPQETEDADPSWMITLTHASGRYQFK 120

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                +FP        +S ++ +S L   V+ +  A +T+E +  L G+   +  + L+ 
Sbjct: 121 GTNPEDFPQLPAINGGHSLQIPTSSLSEGVQSSLVATSTDEAKQVLCGVHLTVQPDFLEF 180

Query: 172 CAVATDGHRLAVA-------EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSL 223
            A  TDGHRLAVA       E +   +    P+ + +P K + E+ RILS+      ++L
Sbjct: 181 AA--TDGHRLAVAQTATQVTETETTDEAQAEPTQLTIPTKTLTELDRILSTSKPENPIAL 238

Query: 224 --SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
              + ++  + +S  ++ R ++G++P Y+ +IP      + V    L +A++R++I++  
Sbjct: 239 YYCQGQVIFDAQSAYLTSRTLEGQYPEYRALIPKKFKNHITVEKRQLLKALERIAILADP 298

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           + + ++L+L   ++  +     + G   E +    +   ++I FN +YL+E +    +  
Sbjct: 299 KNKVIRLTLDKKNQHVLLTTATENGTGQEVIPAQISGKDLEIAFNSQYLIEGLKVTKT-- 356

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++  +++ ++S   +               N  Y+LMP++I
Sbjct: 357 ---SDIRLQINETHSPAIL---------TPLGGQNLTYLLMPVQI 389


>gi|307710360|ref|ZP_07646801.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564]
 gi|307618952|gb|EFN98087.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564]
          Length = 378

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 85/353 (24%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  ++ L    R I  KN IP+   V +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFIQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KGGVVSAHVHSPEVGKVNEEIDTEQVTGEDLTISFNPTYLIDSLKALNSEKVT 347


>gi|326799125|ref|YP_004316944.1| DNA polymerase III subunit beta [Sphingobacterium sp. 21]
 gi|326549889|gb|ADZ78274.1| DNA polymerase III, beta subunit [Sphingobacterium sp. 21]
          Length = 374

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 165/344 (47%), Gaps = 8/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  D  L I A+  +  +  ++   
Sbjct: 1   MRFIVSTSTLLKQLQAVNGASSSSTVLPILENFLFEIKDNSLTISATDLQTSMITSLQVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V A +L + ++ L D  Q   F  +     + IS GD  + L      +FP 
Sbjct: 61  SKEEGKVAVPAKILIETLKTLPD--QPIAFSVDTQTFAIEISAGDGKYKLSGENADDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  + +SVL   + +T FA++ +E+R  + G+   +  ++     V+TD H+
Sbjct: 119 IPVVENPSTVRIPASVLSEAISKTIFAVSNDELRPAMTGVLCQLTPQNTTF--VSTDAHK 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      D+ ++  ++ S+I+P+KA+  +   L S+D  V V  + +       ++ +  
Sbjct: 177 LVRYRRADVKSE--QVTSMILPKKALTLLKSSLPSEDVDVAVEYNNTSAFFKFGNIHLIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  +P+Y+ VIP  N  +L ++   L  ++ RV I ++     V+L ++  +L ++ 
Sbjct: 235 RLIDERYPDYEAVIPQVNPNKLTIDRLLLLNSLRRVVIFANKTTHQVRLRITGSELNISS 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   +A E ++  Y     +I FN K+L+E++ N+  +EVV
Sbjct: 295 EDLDFANEAHERLSCQYEGEDTEIGFNAKFLIEMLSNLECEEVV 338


>gi|322375217|ref|ZP_08049731.1| DNA polymerase III, beta subunit [Streptococcus sp. C300]
 gi|321280717|gb|EFX57756.1| DNA polymerase III, beta subunit [Streptococcus sp. C300]
          Length = 378

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 84/353 (23%), Positives = 172/353 (48%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + +    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLESSFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 295 KGGVVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNSEKVT 347


>gi|290968153|ref|ZP_06559698.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781828|gb|EFD94411.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str.
           28L]
          Length = 371

 Score =  103 bits (256), Expect = 6e-20,   Method: Compositional matrix adjust.
 Identities = 102/390 (26%), Positives = 187/390 (47%), Gaps = 27/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T+ + D+ + L    +I + K N +  S   LL+A   ++EI+A+  E+ I   +P 
Sbjct: 1   MKLTLTKEDLNKGLQTIAKIAQSKTNNLQSSNGFLLKALHNVIEIQANDYEMGIKTIVPG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            ++  G   ++   L +++ KL  D  Q+    + +  T++ I  G   F   +   S+F
Sbjct: 61  IIEEPGETFIANPYLIELIHKLPSDSVQLC---KKDTDTKLLIIGGSVKFECATMNISDF 117

Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
              +  E  Y+ F   S +LK+L++ T FA +T   R    G   H++ E  ++  VATD
Sbjct: 118 NEVEIVESGYAQFTTNSIILKDLIDHTSFACSTNTERPIFMGT--HLDVEKNRINMVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SL 235
            HRLA+        I     + +P + + EI R L   D    V+++  R +L I   ++
Sbjct: 176 THRLALKTYMSETPITTPIKVTIPSRLLMEISRNLPI-DIPEPVTITAVRNYLAIRFSNV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDK 294
            +  RLI+GE+P Y+ VIP      +  +      AV+RVS ++ + +   +K S S ++
Sbjct: 235 YIKTRLIEGEYPKYERVIPKDFQCTVTTDRAAFTSAVERVSLVVQNPQYNLIKFSFSQNQ 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   +PD G   + +        + I FN KY+L+++ +   ++++   +  R   + 
Sbjct: 295 IKLMSRHPDYGVVEDLVACDMTGEDLTISFNSKYILDLLKHCHEEKII---INLR---TQ 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S V I+ KD  S           +V+ PMR
Sbjct: 349 SPVLIKDKDDSS---------CVFVVTPMR 369


>gi|327467737|gb|EGF13231.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK330]
          Length = 378

 Score =  103 bits (256), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAD 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|332359495|gb|EGJ37314.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1056]
          Length = 378

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V++  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEIFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL ++ 
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|291278434|ref|YP_003495269.1| DNA polymerase III subunit beta [Deferribacter desulfuricans SSM1]
 gi|290753136|dbj|BAI79513.1| DNA polymerase III, beta subunit [Deferribacter desulfuricans SSM1]
          Length = 369

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 82/341 (24%), Positives = 165/341 (48%), Gaps = 9/341 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++D+ EL+ HA      KN   V  ++ ++A    + IK++  +   TG     
Sbjct: 1   MKFKCIKNDLQELVQHANNFTTTKNINTVLQNLFIEAEGNTITIKSTNLQTAFTGKFETE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ TV A  L +I+++L DG  I        G+++ I  G S F L +     FP+
Sbjct: 61  IIESGTTTVPAKKLLEILKELPDGNIID---AEFTGSKLVIKSGKSIFTLSTISPEYFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATDGH 179
             E    Y   L S V K+++E+ +F ++ +  +  Y  G   HI     K+   A D  
Sbjct: 118 VSEIVPEYFIRLKSDVFKSMLEKVNFCISNDHSKVEYTGG---HIKVFGNKIELSAADFQ 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           ++A+AE     + +   +I VP+K V E++++L   +  V++   + +    I ++++  
Sbjct: 175 KIAIAESKFDEEFSDEFTINVPKKTVNELIKLLDYSE-YVEIETDKKQALFKINNITIYT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+    +   +        + ++  +   +V RVS ++S    A   S ++DKL +  
Sbjct: 234 KLIEKYIQSLSKLFDIQPKITVSIHKESFLNSVKRVSTLTSDITHAAVFSFNTDKLDIYS 293

Query: 300 DNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSD 339
              + G+  ES+  + Y   P++I  N K+++E++++I+++
Sbjct: 294 LETEYGQGYESIEGITYEGEPIEIILNTKHVIEVMNHINTE 334


>gi|306828595|ref|ZP_07461789.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis
           ATCC 6249]
 gi|304429203|gb|EFM32289.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis
           ATCC 6249]
          Length = 378

 Score =  102 bits (255), Expect = 7e-20,   Method: Compositional matrix adjust.
 Identities = 88/356 (24%), Positives = 175/356 (49%), Gaps = 24/356 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLK 170
                ++P  +E        L + +LK ++  T FA +T+E R  L G+ F + N ++LK
Sbjct: 117 GKDSEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSNHKELK 176

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I  
Sbjct: 177 --TVATDSHRLSQKKLTLEKNGDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLS 289
             E++S   RL++G +P+   +IP   +  +  +  NLR +++R  ++SS      VKL 
Sbjct: 234 RSENISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRHSMERARLLSSATQNGTVKLE 293

Query: 290 LSSDKLCMTVDNPDMGKA---IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +    +   V +P++GK    I++  V  N+  + I FN  YL++ +  ++S++V 
Sbjct: 294 IKGGVVSAHVHSPEVGKVNEEIDTEQVTGND--LTISFNPTYLIDSLKALNSEKVT 347


>gi|228965621|ref|ZP_04126702.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794029|gb|EEM41551.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 376

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280


>gi|294101017|ref|YP_003552875.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM
           12261]
 gi|293615997|gb|ADE56151.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM
           12261]
          Length = 383

 Score =  102 bits (255), Expect = 8e-20,   Method: Compositional matrix adjust.
 Identities = 97/402 (24%), Positives = 180/402 (44%), Gaps = 49/402 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKA-----------SGP 49
           M++ V + D +++     R+   K+TI     +L + +D  L ++A           SG 
Sbjct: 1   MRLQVSKPDFMKIWQTTERVTSTKSTITSLAGILCRTDDASLTLEATDLKTSIKCIASGV 60

Query: 50  EIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109
           +IE  G     V V G +   A      V  +++G  I F              G + + 
Sbjct: 61  QIEEGGEAILPVKVVGELFKKAPTDTFTV-SVKEGKGIIF-------------AGRNTYR 106

Query: 110 LQSFPESEFPSTKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
             ++P  EFP     E    F    A ++ + L E T  +   EE   YL    F +   
Sbjct: 107 FSTYPVEEFPHLPSSENAKFFCTVKAETLAQILSEGTVASTLGEEFPKYLGAALFELKGN 166

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSE 225
           D+++  V+TDG RL++++V ++ +      I++P   + E+LR LSS   D  V++   +
Sbjct: 167 DIRI--VSTDGRRLSLSKV-LLDEYGDTEKILLPLAGLKELLRQLSSLEGDKPVQILHDD 223

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM--SSVRI 283
           +  +  +  +  S+R I+  FPNY+ ++   +   L +  + L +A++RV ++     R+
Sbjct: 224 ALAYFQMGDIEFSIRKIESSFPNYEKILNPQSTTTLTIERSALTEALERVDVVVRDHTRM 283

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
              KLS + D L M    P++G+A E ++   +  P+ I FN  YLL+ +  +  + V  
Sbjct: 284 VIFKLSPNGD-LRMMGRAPEIGEAEEILDAQIDGEPLLIAFNVAYLLDGLKALHGESVF- 341

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + F       S+   G+D           +  Y+LMP+++
Sbjct: 342 --ITFNGPEGQMSMLRPGRD-----------DFLYMLMPIKL 370


>gi|313205876|ref|YP_004045053.1| DNA polymerase iii, beta subunit [Riemerella anatipestifer DSM
           15868]
 gi|312445192|gb|ADQ81547.1| DNA polymerase III, beta subunit [Riemerella anatipestifer DSM
           15868]
 gi|315022188|gb|EFT35216.1| DNA polymerase III beta subunit [Riemerella anatipestifer RA-YM]
 gi|325336683|gb|ADZ12957.1| DNA polymerase III, beta subunit [Riemerella anatipestifer RA-GD]
          Length = 376

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 158/345 (45%), Gaps = 6/345 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S++ + L     +I    + P+  + L + ++  L+I +S  E  +  ++   
Sbjct: 1   MKFIVASSELQKALQVVSGVISSSQSRPILENYLFELDNQNLKITSSDGETTLVTSLEVM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPESEF 118
            +  G I V A    ++++   +       KE  NE+G  + I     N+ +      ++
Sbjct: 61  SEDQGKIAVPAKTFQELIKTFGEQPLTFTVKESANEMGALLEILDDRDNYEVALDNAEDY 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +   S  + S VL   +  T FA + + +R  + G+ F   E +     V+TD 
Sbjct: 121 PELPEFDASQSVTIPSGVLAEALVNTLFATSNDTLRPVMTGVLFQFGENEANF--VSTDS 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL V +   +     +   I+P+K +     IL++ +  V +  +E+       +    
Sbjct: 179 HRLVVYKRKDIKNSEPI-EFIMPKKPLSIFKNILANTEEEVVIEFNENMAKFTFGNHIWI 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY  VIP  N   L VN   L  ++ R SI+S+     V+  LS + L + 
Sbjct: 238 CRLIDGKYPNYSAVIPQENPNLLTVNRNLLLSSIRRASILSNKSTNQVRFKLSGNILHLH 297

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++ +   KA   +   Y    ++I F+ K+L E++  +SSD+V+
Sbjct: 298 AEDTEFANKADMQIPCDYKGEDINIGFSSKFLTEMLSVLSSDDVL 342


>gi|229190784|ref|ZP_04317777.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876]
 gi|228592654|gb|EEK50480.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876]
          Length = 376

 Score =  102 bits (255), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 80/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|218897702|ref|YP_002446113.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228901233|ref|ZP_04065431.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222]
 gi|218540909|gb|ACK93303.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228858404|gb|EEN02866.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222]
          Length = 376

 Score =  102 bits (254), Expect = 9e-20,   Method: Compositional matrix adjust.
 Identities = 78/288 (27%), Positives = 138/288 (47%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280


>gi|288922085|ref|ZP_06416290.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
 gi|288346562|gb|EFC80886.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
          Length = 391

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 180/406 (44%), Gaps = 38/406 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           M++TV+R  + +L+  A R +  K T  + V   +LL+A+   L + A   E+  TGA  
Sbjct: 1   MRLTVDRDSLADLVPWAARTLPSKATTQLQVLAGLLLEADGSALRVSAYDYEVATTGAAD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V   G   V+  +L D+V+ L   A++    +   GT + I+ G ++F L   P  ++
Sbjct: 61  ARVVEEGRALVNGKMLADLVKSLPK-ARVELAVD---GTRLTITSGSASFKLPMLPSEDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      +    + + +    V +   A   ++    L GI    + + + L A  TD 
Sbjct: 117 PALPPMPDLLG-TVDAGLFVTAVGQVGIAAGRDDTLPVLTGIRVEFSPKTITLAA--TDR 173

Query: 179 HRLAVAEVDI-VAQIAKMP-SIIVPRKAVGEILRILS----------SKDSSVKVSLSES 226
           +RLAV  +    A  A +  ++++P + + +I R              K +  + S   +
Sbjct: 174 YRLAVRTIPWEPAPDADLTLTLLIPARTLSDIARAAGEGRITIAAAGQKKAEGRGSGEPA 233

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
               ++     + RLI+G FP Y+ ++P S      V    L  AV RV++++S R   V
Sbjct: 234 SAGFDVAGRQTTTRLIEGTFPPYRKLLPDSTPLIAEVEIPPLAAAVKRVALVAS-RTAPV 292

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +L+ +   L +        +A E++ V Y+   + + FN  YLL+     ++  + DD V
Sbjct: 293 QLTFAPGLLALEAGAGGEAQASETLAVAYDGPELKVSFNPAYLLD-----AAGAIEDDLV 347

Query: 347 VFRLDSSNSSV------FIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385
            F   +    +       + GK   D     D +    Y+LMP+R+
Sbjct: 348 RFGFATEEPEIAAVKPAILTGKTGGDPAEIPDYR----YLLMPIRL 389


>gi|229110137|ref|ZP_04239713.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
 gi|228673329|gb|EEL28597.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
          Length = 376

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDVK--ANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E  ++I F+ +++++ +  I  + +
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEETI 345


>gi|296503248|ref|YP_003664948.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
 gi|296324300|gb|ADH07228.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
          Length = 376

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDVK--ANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E  ++I F+ +++++ +  I  + +
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEETI 345


>gi|183980037|ref|YP_001848328.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M]
 gi|183173363|gb|ACC38473.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M]
          Length = 402

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 182/404 (45%), Gaps = 35/404 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL  +D  L I     E+     +PA 
Sbjct: 13  LKFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ VS  LL DI R L +   + F+ +   G  V ++ G++ F L +    ++P+
Sbjct: 73  IASPGTVLVSGRLLSDITRALPN-KPVDFYVD---GNRVALTCGNARFSLPTMAVEDYPT 128

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  E+   +  L + +    + +   A   ++    L GI   I+ E  K+   ATD 
Sbjct: 129 LPTLPED---TGTLPAELFSEAIGQVAIAAGRDDTLPMLTGIRVEISGE--KVVLAATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230
            RLAV E+   A    +  +++VP K +GE  +  ++  S V++SL        +  + +
Sbjct: 184 FRLAVRELTWNALSPDIEAAVLVPAKTLGEAAKA-NTDGSEVRLSLGAGMGVGKDGLLGI 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           + +    + RL+D EFP ++ ++P  +      +   L +A+  V++++  R   V++  
Sbjct: 243 SGDGKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVAD-RGAQVRMEF 301

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +   L ++    D+G+A E + V +   P+ I FN  YL++ + ++ S     + V F  
Sbjct: 302 ADGMLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGF 356

Query: 351 DSSNSSVFIR---GKDKDSKNNKDNKVNA------FYVLMPMRI 385
            +      +R    +D+      D    A       Y+LMP+R+
Sbjct: 357 TTPGKPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRL 400


>gi|32266625|ref|NP_860657.1| DNA polymerase III subunit beta [Helicobacter hepaticus ATCC 51449]
 gi|32262676|gb|AAP77723.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 353

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 86/346 (24%), Positives = 167/346 (48%), Gaps = 27/346 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ +S +  +L +    +++++   ++ H+  +A D  L +KA+  EI +   I   
Sbjct: 1   MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYINIP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV+   + DI+++L+D       K++ L    +IS G +   L  F   EFP 
Sbjct: 61  CQAQGNATVNGKQILDIIKRLKDDNVTIETKQDSL----HISQGKARTKLPMFNADEFPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      + S    N +++ + A+ T   +Y LNG    I  +D     VATD  R
Sbjct: 117 FPEYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDI--KDYSFNFVATDTRR 174

Query: 181 LAVAEVDIVAQIAKMPSI-----IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           LA+ E        K PSI     ++P+KA+ EI ++      ++++  + + + L     
Sbjct: 175 LALIEY-------KNPSINALSLVIPKKAINEIQKLFV---DTLEIYHNPTHLILKNNDY 224

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR-QAVDRVSIMSSVRIQAVKLSLSSDK 294
           +   +LI G++P+Y+ +IP    KE +      + + VD +  + S+    +K++LS ++
Sbjct: 225 TFYTKLISGKYPDYEKIIP----KEFKHKIVLPKDKFVDALQFVKSLA-NNIKITLSPNE 279

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           +     N + G+A   + V  N   + +  N KY+L+ +  I ++E
Sbjct: 280 VLFESLNEESGEASTQIEVQTNIENLTLGINSKYILDFLSQIDANE 325


>gi|295108628|emb|CBL22581.1| DNA polymerase III, beta subunit [Ruminococcus obeum A2-162]
          Length = 371

 Score =  102 bits (254), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 188/390 (48%), Gaps = 30/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++L+ +  + + +  K T+P+   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + + A + Y+I+R+L D         N + T   I+   + F +      +F  
Sbjct: 61  IEEKGMVALDAKIFYEIIRRLPDNDVTITTDSNYVAT---ITCEKAKFTIPGKAGEDFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK ++ +T F++A  E    + G  F I +  LK+  ++ DGHR
Sbjct: 118 LPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCLKI--ISLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +  + +    I+VP K +GEI +ILS + D  V +  +++ I    +   +  
Sbjct: 176 ISIRKMPLKREYSDR-KIVVPGKTLGEISKILSGEIDDQVNIYFTKNHILFEFDQTMVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDKLC 296
           RLI+GE+     ++    D ++ VN       +DR +++  VR    + + + ++   + 
Sbjct: 235 RLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLL--VREGDKKPIVIEITDGSME 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNS 355
           + +D+  MG   E +++  +   + I FN K+L++ +      +V+DDEV+   L +  +
Sbjct: 293 LKIDSA-MGSMNEEIDIEKSGKDIVIGFNPKFLIDAL------KVIDDEVINMYLMNPKA 345

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             FIR          D++ N  Y+++P+ I
Sbjct: 346 PCFIR----------DDEENYTYLILPVNI 365


>gi|262281646|ref|ZP_06059415.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA]
 gi|262262100|gb|EEY80797.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA]
          Length = 378

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 175/354 (49%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   INFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISI 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
           +       V   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  NNENAGLLVTSLGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  ++        L + +LK+L+  T FA + +E R  L G+ F + +    L
Sbjct: 117 GKDADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLTDHK-NL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ I+ +      +++P +++ E   + S +  +V+V  +  +I   
Sbjct: 176 KTVATDSHRLSQKKI-ILEKNGDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E++S   RL++G +P+   +IP      +    + LR A++R  ++S + +   VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKA---IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
               +   V++P++G+    I++ NV  +   + I FN  YL+E +  ++S++V
Sbjct: 295 EGGVVSAHVNSPEVGRVNEEIDAENVSGDN--LTISFNPTYLIEALKAVNSEKV 346


>gi|149174463|ref|ZP_01853089.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797]
 gi|148846573|gb|EDL60910.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797]
          Length = 376

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 172/391 (43%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK++  RS +L        +I  +    V     L+A DG   +  +  E+ I       
Sbjct: 1   MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTE-VNISHGDSNFYLQSFPESE 117
            V V G I +S H L  I+R+   D  +I   K+ E   + + I  G S F L     SE
Sbjct: 61  EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+ +       FE+     + ++ RT FA   E  RY L G+ F +  E  KL   ATD
Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDV--EGDKLTLAATD 178

Query: 178 GHRLAVAEVDIVAQIAKM-----PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           G RLA+ E     Q ++      P  ++P KA+  I + L+  + ++++++  + + +  
Sbjct: 179 GRRLAMVESACSYQGSEAYENNRP--VIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKS 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
              ++  RL++G FP Y++VIP      + +       AV +  I++ V  + V    SS
Sbjct: 237 GRSTIFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSS 296

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L +      +G++   + + +    + I F+ +YL + +  + S       +  +L  
Sbjct: 297 GLLTLKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAA----HIRLQLID 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S+S+  ++  D  +           YV+MP+
Sbjct: 353 SDSAAVLKTDDGYT-----------YVIMPL 372


>gi|309811337|ref|ZP_07705124.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185]
 gi|308434644|gb|EFP58489.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185]
          Length = 378

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 179/396 (45%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K+ VER  + E +  A R + ++  +PV   VLL+A+   L + A   E+     + A 
Sbjct: 3   VKLRVERDVLAEAVAWAVRGLSQRPPVPVLAGVLLEASPEGLTLSAFDYEVSAKVTVDAD 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ V   LL DI + L     I    E   G++V ++ G + F LQS P  E+P+
Sbjct: 63  VEEAGTVLVLGRLLADITKSLPH-KPIELISE---GSKVQVTCGSAKFSLQSMPTGEYPT 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +A  V    V +   A    +    L G+   ++    KL  +ATD +R
Sbjct: 119 LPANPDPTGV-IAGDVFTQAVAQVSVAADRGDTLPILTGVRVEVSGN--KLTLLATDRYR 175

Query: 181 LAVAEV-----DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           LA+ EV     D  A+ A +    VP + +  + + L +   +V +SLS +     +   
Sbjct: 176 LAMREVMWNAGDEGAEYAAL----VPARTLDSLAKSLGAA-GNVSLSLSGASTGSGLAGF 230

Query: 236 S-----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                 M+ RL+DG++P   ++ P S D    V    L +A  RVS+++  R   V+L  
Sbjct: 231 EAGQRRMTTRLLDGDYPKVTSLFPTSVDTTAIVETAQLAEACKRVSLVAE-RNMPVRLRF 289

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           + D + +     +  +A E+     +   ++I F+ ++LL+ +  + +  V       RL
Sbjct: 290 AEDSVRIEAGTGEDAQASETFEAKIDGPELEIAFSPQFLLDGLGVVGTKYV-------RL 342

Query: 351 DSSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +  +    + G+D+   +  D+     Y++MP+R
Sbjct: 343 GFTQPTRPAVLSGQDEIDGDADDSY---RYLIMPVR 375


>gi|157151517|ref|YP_001449324.1| DNA polymerase III subunit beta [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076311|gb|ABV10994.1| DNA polymerase III, beta subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 378

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 88/354 (24%), Positives = 174/354 (49%), Gaps = 22/354 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   INFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNG-QISIENFISV 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
           +       V   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  NNENAGLLVTSLGSILLEATFFINVVSSLPD---VTLDFKEIE-QKQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  ++        L + +LK+L+  T FA + +E R  L G+ F + +    L
Sbjct: 117 GKDADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLTDHK-NL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ I+ +      +++P +++ E   + S +  +V+V  +  +I   
Sbjct: 176 KTVATDSHRLSQKKI-ILEKNGDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E++S   RL++G +P+   +IP      +    + LR A++R  ++S + +   VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKA---IESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
               +   V++P++G+    I++ NV      + I FN  YL+E +  ++S++V
Sbjct: 295 EGGVVSAHVNSPEVGRVNEEIDAENVSGEN--LTISFNPTYLIEALKAVNSEKV 346


>gi|327463835|gb|EGF10151.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1057]
          Length = 378

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL +  
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIVG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|169823699|ref|YP_001691310.1| DNA polymerase III subunit beta [Finegoldia magna ATCC 29328]
 gi|302380135|ref|ZP_07268608.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3]
 gi|303234446|ref|ZP_07321084.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4]
 gi|167830504|dbj|BAG07420.1| DNA polymerase III beta subunit [Finegoldia magna ATCC 29328]
 gi|302312077|gb|EFK94085.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302494401|gb|EFL54169.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4]
          Length = 367

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 172/343 (50%), Gaps = 14/343 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + + ++L+ +  A + +  + TI +   +L  A +  L + A+  E+ +       
Sbjct: 1   MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I +++ ++ +I+RKL D        +N     +NI    + F +Q    +EFPS
Sbjct: 61  IYEKGQIVINSSMIGNIIRKLPDADIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L  S L++ + +T FA + ++ R  L G+ F+I  + ++   VA DG+R
Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEF--VALDGYR 174

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           ++   +D ++ +++     IVP +A+ E+ +IL  ++  + +++    I   +E+  +  
Sbjct: 175 VS---LDCLSNVSEFEMKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLIDG++ +Y  V+       + +    L+ A++R S+M+   +   VKL  S ++L ++
Sbjct: 230 RLIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHIS 289

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             N D+GK  E +        + I FN KYLL+ +  I  D++
Sbjct: 290 -SNTDIGKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVIDDDDI 331


>gi|227539239|ref|ZP_03969288.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770712|ref|ZP_07080591.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227240921|gb|EEI90936.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300763188|gb|EFK60005.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 374

 Score =  102 bits (253), Expect = 1e-19,   Method: Compositional matrix adjust.
 Identities = 85/344 (24%), Positives = 164/344 (47%), Gaps = 8/344 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  D  L I A+  +  +  ++   
Sbjct: 1   MRFIVSTSILLKQLQAISGASSSSTVLPILENFLFEIKDNTLTISATDLQTSMVTSLQIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + + +L + ++ L D         N L  E  IS GD  + L      +FP 
Sbjct: 61  SKEEGRVAMPSKILIETLKTLPDQPVAFSVDTNTLAIE--ISAGDGKYKLSGENADDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +  + + VL   + +T FA++ +E+R  ++G+   + E+      V+TD H+
Sbjct: 119 IPTVDNTSTVNIPAPVLAEAINKTIFAVSNDELRPAMSGVLVQLAEQSTTF--VSTDAHK 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      DI     K  S+I+P+KA+  +   L S D +V +  + +       ++ +  
Sbjct: 177 LVRYRRTDIYTD--KPASLILPKKALSLLKSSLPSDDVNVTIEYNNTNAFFQFGNIFLIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  +P+Y+ VIP  N  +L V+ +     + RV I ++     V+L +S  +L ++ 
Sbjct: 235 RLIDERYPDYEAVIPQVNPNKLTVDRSLFLNTLRRVVIFANKTTHQVRLRISGSELNISA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ D   +A E ++  +    M+I FN K+L+E+++N+SS+EV+
Sbjct: 295 EDLDFSNEAHERLSCQFEGDDMEIGFNAKFLVEMLNNLSSEEVI 338


>gi|262200048|ref|YP_003271256.1| DNA polymerase III subunit beta [Gordonia bronchialis DSM 43247]
 gi|262083395|gb|ACY19363.1| DNA polymerase III, beta subunit [Gordonia bronchialis DSM 43247]
          Length = 388

 Score =  102 bits (253), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 182/406 (44%), Gaps = 41/406 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           MK  V R +  + +    R +  +  +PV   V+L A+DGL     SG + E++   +I 
Sbjct: 1   MKFRVARDEFADSVAWVARSLPSRPPVPVLGCVVLGADDGL---TISGFDYEVSAQESIA 57

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115
           A +   G + VS  LL DI + L +       K  ++   G  V I+ G + F L + P 
Sbjct: 58  AEIAEPGQVLVSGRLLADITKALPN-------KPVDVTLDGARVAIACGSAKFSLPTMPV 110

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P   +   + S  + + +    + +   A   ++    L G+   I    + L A  
Sbjct: 111 EDYPQLPDVPAI-SGTIPTQLFAEAISQVAIAAGRDDTLPMLTGVRVEIEGSTVVLAA-- 167

Query: 176 TDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS---------E 225
           TD  RLAV E+           +++VP K + E  +   ++ + V VSL+         +
Sbjct: 168 TDRFRLAVRELQWEPTDPDTSGAVLVPAKTLSESAKTAGAEGTGV-VSLAFGNGSAIGND 226

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             + +  E+   + RL+D EFP ++ ++P S+     ++   L +A+ RV++++  R   
Sbjct: 227 GILGILGETKRTTTRLLDAEFPKFRQLLPASHTAIATIDSAPLIEAIKRVALVAE-RGAQ 285

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V+L      + +T    + GKA E + V +    + I FN  YLL+ +  I++D  VD  
Sbjct: 286 VRLEFGEGSVLLTAGGDEAGKAEEELPVQFAGEALTIAFNPGYLLDGLSAINAD-TVD-- 342

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKV-----NAF-YVLMPMRI 385
             F   + +    +R    +     ++       +AF Y+LMP+R+
Sbjct: 343 --FGFTTPSRPAVLRPSSGEQPAADESGAFAAPESAFTYLLMPVRL 386


>gi|319945981|ref|ZP_08020230.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           australis ATCC 700641]
 gi|319747789|gb|EFW00034.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           australis ATCC 700641]
          Length = 378

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 85/351 (24%), Positives = 167/351 (47%), Gaps = 14/351 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I   
Sbjct: 2   INFSINKAYFLQALNTTKRAISSKNAIPILSTIKIDVTSEGITLIGSNGQISIEYFISVK 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   G+I + A    ++V  L D   +   KE E    V +S G S   L+  
Sbjct: 62  DENAGLLVTTPGAILLEATFFINVVSSLPD--VVLDVKEIEQKQIVLVS-GKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L    LK ++  T FA +T+E R  L G+ F +++   +L  
Sbjct: 119 DAEQYPRIQEISASNPLTLPIQTLKKIISETAFAASTQESRPILTGVHFVLSDHK-ELKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++   + +         +++P +++ E+  + S +   V+V  + ++I    +
Sbjct: 178 VATDSHRMSQKNITLEKNGDNF-DVVIPSRSLRELTSVFSDEIEQVEVFFANNQILFRSD 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP     E+     +LRQA++R  ++S + +   VKL ++S
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFSSEVTFKVAHLRQAMERARLLSNATQNGTVKLEIAS 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   V++P++G+  E ++    +   ++I FN  YL++ +  I S++VV
Sbjct: 297 GVVSAHVNSPEVGRVNEEIDTEAVSGDDLNISFNPTYLIDALKAIESEKVV 347


>gi|119964048|ref|YP_945835.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1]
 gi|119950907|gb|ABM09818.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1]
          Length = 374

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 102/392 (26%), Positives = 185/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R  + E +    R +  +  +PV   +LL+A  G + + +   E      IPA 
Sbjct: 1   MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           + V G+I VS  LL DI R L   A +    +   G++V ++   S+F+L + PESE+P+
Sbjct: 61  IAVEGTILVSGRLLADICRSLPS-APVEVETD---GSKVTLTCRRSSFHLATMPESEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 + S  L        V +   A + ++    L G+   I E+DL +  +ATD +R
Sbjct: 117 LPALPAI-SGTLPGDAFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173

Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236
           LA+ EV    +   I+   S +V  K + E+ + L  S D ++ ++  +SR+ +  ES  
Sbjct: 174 LAMREVPWKPVTPGIST--SALVKSKTLNEVAKTLGGSGDINLALADDDSRL-IGFESGG 230

Query: 237 MSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +    L+DG++P  +++ P S      V    L +AV RVS+++  R   V+L+ +   
Sbjct: 231 RTTTSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTQGL 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     +  +A E +    +   + + FN  YL+E +  I +       V F   ++ 
Sbjct: 290 LNLDAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIET-----KYVRFSFTTAP 344

Query: 355 SSVFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385
               I  + + D ++  D +    Y++MP+R+
Sbjct: 345 KPAMITAQAEADGEDQDDYR----YLVMPVRL 372


>gi|297588056|ref|ZP_06946700.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC
           53516]
 gi|297574745|gb|EFH93465.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC
           53516]
          Length = 367

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 172/343 (50%), Gaps = 14/343 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + + ++L+ +  A + +  + TI +   +L  A +  L + A+  E+ +       
Sbjct: 1   MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I +++ ++ +I+RKL D        +N     +NI    + F +Q    +EFPS
Sbjct: 61  IYEKGQIVINSSMIGNIIRKLPDDDIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L  S L++ + +T FA + ++ R  L G+ F+I  + ++   VA DG+R
Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMNDRIEF--VALDGYR 174

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           ++   +D ++ +++     IVP +A+ E+ +IL  ++  + +++    I   +E+  +  
Sbjct: 175 VS---LDCMSNVSEFEMKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLIDG++ +Y  V+       + +    L+ A++R S+M+   +   VKL  S ++L ++
Sbjct: 230 RLIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHIS 289

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             N D+GK  E +        + I FN KYLL+ +  I  D++
Sbjct: 290 -SNTDIGKVDEYVKCEIGGEDLKIAFNAKYLLDGLKVIDDDDI 331


>gi|117927213|ref|YP_871764.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B]
 gi|117647676|gb|ABK51778.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B]
          Length = 387

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 105/404 (25%), Positives = 188/404 (46%), Gaps = 38/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V+R    + +  + R +  + ++PV   +L++A D L  I +   E+  + +I A+
Sbjct: 1   MRFQVDRGLFADAVAWSARTLPARPSMPVLGGLLIEAMDEL-RIASFDYEVSASASIDAT 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
           +   G   VS  LL +I R L   AQ     + EL G+ + I+ G S F L   P  E+P
Sbjct: 60  IAETGRALVSGRLLAEISRNLP--AQP---VDVELDGSRLVIACGASRFTLPLLPIEEYP 114

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      +    + + +    V +   A   ++    L G+   I+ + + L A  TD +
Sbjct: 115 NLPPLPTLAG-TIGADLFATAVSQVVVAAGRDDTLPVLTGVRMEIDRDVMTLAA--TDRY 171

Query: 180 RLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLS-ESRIHLNIESL 235
           RLAV   D   Q A+     + ++P + +GE+ + L++  + V + LS ES  + N+   
Sbjct: 172 RLAVR--DFHWQPARGDLTAAALIPARTLGEVAKALTTG-AEVTIFLSTESTSNENLIGF 228

Query: 236 S---------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           S          + RLIDGE+  Y++++P       +V    L +AV RVS+++  R   V
Sbjct: 229 SGRGTSGERQTTTRLIDGEYVKYRSLLPAEAAATAQVATAALIEAVRRVSLVAP-RTSPV 287

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD----ICFNYKYLLEIIDNISSDEVV 342
           +L+ + D+L +     D  +A E ++  +     D    I FN  YLL+ +  + S    
Sbjct: 288 RLTFNPDRLTLEAGTGDDAQASEWIDARFESSTGDDEFVIAFNPAYLLDGLGAVES---- 343

Query: 343 DDEVVFRLDSSNSSVFIR-GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +       S N    +R GKD D+  +  +  +  Y+LMP+R+
Sbjct: 344 -ETTTLSFTSPNKPAVLRAGKDADTSADAGSD-DYRYLLMPVRL 385


>gi|327490339|gb|EGF22126.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1058]
          Length = 378

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I   
Sbjct: 2   IHFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+  
Sbjct: 62  NENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + +LK+++  T FA + +E R  L G+ F + + +  L  
Sbjct: 119 DADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTD-NRSLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E
Sbjct: 178 VATDSHRMSQKKITLEKNGDNF-DVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
           ++S   RL++G +P+   +IP      L  N ++LR A++R  ++S + +   VKL +  
Sbjct: 237 NISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIIG 296

Query: 293 DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEV 341
             +   V++P++G+  E ++        + I FN  YL++ +  I S++V
Sbjct: 297 GIVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEKV 346


>gi|229045382|ref|ZP_04192044.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
 gi|228724982|gb|EEL76277.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
          Length = 376

 Score =  101 bits (252), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 89/353 (25%), Positives = 165/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISIKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDVK--ANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  +     E  ++I F+ +++++ +  I  + +
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIKEETI 345


>gi|116668570|ref|YP_829503.1| DNA polymerase III subunit beta [Arthrobacter sp. FB24]
 gi|116608679|gb|ABK01403.1| DNA polymerase III, beta subunit [Arthrobacter sp. FB24]
          Length = 374

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    R +  +  +PV   +LL+A  G + + +   E      IPA 
Sbjct: 1   MKFRVERDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           + V G+I VS  LL DI R L   A +    +   G +V ++   S+F+L + PE+E+P 
Sbjct: 61  ISVEGTILVSGRLLADICRSLP-SAPVDVETD---GNKVTLTCRRSSFHLATMPEAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 + S  +        V +   A + ++    L G+   I E+DL +  +ATD +R
Sbjct: 117 LPALPTI-SGTVPGDSFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173

Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLS 236
           LA+ EV    +   I+   S +V  K + E+ + L  S D ++ ++  +SR+ +  ES  
Sbjct: 174 LAMREVPWKPVTPGIST--SALVKAKTLNEVAKTLGNSGDINLALADDDSRL-IGFESGG 230

Query: 237 MSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +    L+DG++P  +++ P +      V    L +AV RVS+++  R   V+L+ +  +
Sbjct: 231 RTTTSLLVDGDYPKIRSLFPDATPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTDGQ 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     +  +A E +        + + FN  YL+E +  I +       V F   ++ 
Sbjct: 290 LHLDAGTGEDAQASEELEAQLTGDEITVAFNPHYLIEGLSVIET-----KFVRFSFTTAP 344

Query: 355 SSVFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385
               I  + D D ++  D +    Y++MP+R+
Sbjct: 345 KPAMITAQVDADGEDQDDYR----YLVMPVRL 372


>gi|153811987|ref|ZP_01964655.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174]
 gi|149831886|gb|EDM86972.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174]
          Length = 371

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 194/401 (48%), Gaps = 52/401 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++L+ +  + + +  K T+P+   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-SFPESEF- 118
           ++  G + + A + Y+I+R+L D              +V I+  DSNF    +  +++F 
Sbjct: 61  IEEKGMVALDAKIFYEIIRRLPDN-------------DVTIT-TDSNFVATITCEKAKFT 106

Query: 119 -PSTKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
            P    E++ Y        S  L+   LK ++ +T F++A  E    + G  F I +  L
Sbjct: 107 IPGKAGEDFAYLPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCL 166

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRI 228
           K+  V+ DGHR+++ ++ +  + +    I+VP K + EI +ILS + D  V +  +++ I
Sbjct: 167 KI--VSLDGHRISIRKMPLKKEYSDR-KIVVPGKTLSEISKILSGEIDDQVSIYFTKNHI 223

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQA 285
               +   +  RLI+GE+     ++    D ++ VN       +DR +++  VR    + 
Sbjct: 224 LFEFDQTMVVSRLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLL--VREGDKKP 281

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           + + +  + + + +D+  MG   E +++  +   + I FN K+L++ +      +V+DDE
Sbjct: 282 IVIEIKDNSMELKIDSA-MGSMNEEIDIEKDGKDILIGFNPKFLIDAL------KVIDDE 334

Query: 346 VV-FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V+   L +  +  FIR          D++ N  Y+++P+ I
Sbjct: 335 VIHMYLMNPKAPCFIR----------DDEENYTYLILPVNI 365


>gi|260592336|ref|ZP_05857794.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319]
 gi|260535723|gb|EEX18340.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319]
          Length = 322

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/329 (24%), Positives = 159/329 (48%), Gaps = 21/329 (6%)

Query: 60  SVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           ++D C   G   V++  + D V++L +         +E+   +   +G  NF +      
Sbjct: 6   NLDSCEGEGDFAVNSQTILDAVKELPEQPLALDVNFDEMKIYITYQNGSYNFPI--LGAD 63

Query: 117 EFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           E+P  +   +   S  + ++ L + + R+ FA A +E+R  +NGI+F +  + L +  VA
Sbjct: 64  EYPRVQPISDNASSITIDAAKLSDSINRSIFATAQDELRPVMNGIYFDLTSDSLAI--VA 121

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           +DGH+L V   +   +     + I+P+K    +  +L+     V +   E    ++    
Sbjct: 122 SDGHKL-VRNKNFSIKSETPSAFILPKKPATLLKTVLAKDGGDVVIRFDERFADISFADG 180

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           ++S RLI+G++PNY +VIP  N   + ++  +L  A+ RV   +S   Q ++  +S+  L
Sbjct: 181 NLSCRLIEGKYPNYNSVIPQDNPNRITIDRKSLIGALRRVLPFASDSSQLIRFHVSTGLL 240

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            +  ++ D    A ES+   Y+   M I F    +LEI++N+ SD+V    V+   D S 
Sbjct: 241 ELNAEDIDFSTSAKESVTCEYDGNAMSIGFKGSSMLEILNNLESDDV----VIQLADPSR 296

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           + V + G   +++       +   ++MPM
Sbjct: 297 AGVIVPGVQPENE-------DVLMLIMPM 318


>gi|288916709|ref|ZP_06411084.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
 gi|288351964|gb|EFC86166.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
          Length = 386

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 95/399 (23%), Positives = 178/399 (44%), Gaps = 29/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER +  + +    R +  + T  + V   +LL A    L++ A   E+   G + 
Sbjct: 1   MKFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGEVD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  +L DI R L   A +    +   GT + ++ G++ F L   P  ++
Sbjct: 61  ATVTEEGRGLVNGKMLADITRSLP-AAPVDVSVD---GTRLVVACGNARFALPMLPVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      + +  +  +   + V +   A   ++    L G+   I+ + L L A  TD 
Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTLAA--TDR 173

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV  +           + +VP + + +  + LS     V ++L      E+      
Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGTGVEVAIALGTGPSGETLAGFAG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +   + RL++G FP Y+ ++P S+    ++    L +AV RV++++  R   V+L+ + 
Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVAP-RTAPVQLTFTP 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD- 351
           D L +        +A E++ V Y+   + + FN  YLL+ +  + SD V    + F  D 
Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPTYLLDALGALESDIV---RIGFASDE 349

Query: 352 ----SSNSSVFIRGKDKDSKNN-KDNKVNAFYVLMPMRI 385
               ++N    + GK  D +    D +    Y+LMP+R+
Sbjct: 350 DPALAANKPAILTGKGGDDQTEIPDYR----YLLMPIRL 384


>gi|32476252|ref|NP_869246.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1]
 gi|32446796|emb|CAD76632.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1]
          Length = 444

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 27/292 (9%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           + IS   S F L      EFPS  E +     ++++   + ++ RT FA  +E  RY L 
Sbjct: 169 IKISGSRSKFRLPGNNPDEFPSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALG 228

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSK 215
           G+   + E    + AV TDG RLA  E     +        + IVP +A+G I R LS K
Sbjct: 229 GVLLEMEEN--SVIAVGTDGRRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEK 286

Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDR 274
           D  V+V+   + + +      +S RL++G +PN++ V+P   N  ++ V    L  A+ +
Sbjct: 287 DDFVEVASRGNDLLIRTPRAVISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQ 346

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE--- 331
            +I++ +  + V  + +   L +     D+G++   + + Y+   + +  +++YL +   
Sbjct: 347 AAIVTDLDSRGVDFTFADGTLKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCK 406

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++DN S+       VV  ++S+ S   ++  D  +           YV+MPM
Sbjct: 407 VMDNEST-------VVMEIESAKSPALLQTDDGYA-----------YVIMPM 440


>gi|326692340|ref|ZP_08229345.1| DNA polymerase III, beta subunit [Leuconostoc argentinum KCTC 3773]
          Length = 377

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 82/340 (24%), Positives = 164/340 (48%), Gaps = 19/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   ++ L    R I  + TIP+  ++ +  +   L +  S  +I I   I  S
Sbjct: 1   MQFSINRQVFIKSLNDVSRAISSRTTIPILTNIKIVLSQDELILTGSNSDISIEKRIEQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +   G IT+ A    +IV+ L  D   ++       G   +I+ G S F +  
Sbjct: 61  DTSAQLVIGSTGGITLPATFFANIVKNLPADDLTLAVD-----GLRASITSGASAFTING 115

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  
Sbjct: 116 QDVRNYPQLPELDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK-- 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           AV TD HRL+   V +    A++ + +I+P K+  E+  +L  +D  V + L++++   +
Sbjct: 174 AVTTDSHRLSQRIVTLTGTDAQVNADVIMPAKSFNELQSLLEGQD-RVDIKLAKNQAVFD 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           +   +   RL++G +P    +IP  +  +L ++   L  A++R S++S   R   V+L++
Sbjct: 233 LGHTTFYSRLLEGNYPETDRLIPTESTTQLTIDAGTLLGAINRASLLSHESRNNVVQLTM 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
           +   + +T  + ++G+  E +     E   ++I FN  Y+
Sbjct: 293 TDGVVTLTGTSQEVGQVQEELQTTSVEGENLEISFNPDYV 332


>gi|213581271|ref|ZP_03363097.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 170

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 4/171 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR 168


>gi|327542303|gb|EGF28790.1| DNA polymerase III, beta subunit [Rhodopirellula baltica WH47]
          Length = 440

 Score =  101 bits (251), Expect = 2e-19,   Method: Compositional matrix adjust.
 Identities = 75/292 (25%), Positives = 138/292 (47%), Gaps = 27/292 (9%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           + IS   S F L      EFPS  E +     ++++   + ++ RT FA  +E  RY L 
Sbjct: 165 IKISGSRSKFRLPGNNPDEFPSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALG 224

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSK 215
           G+   + E    + AV TDG RLA  E     +        + IVP +A+G I R LS K
Sbjct: 225 GVLLEMEEN--SVIAVGTDGRRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEK 282

Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDR 274
           D  V+V+   + + +      +S RL++G +PN++ V+P   N  ++ V    L  A+ +
Sbjct: 283 DDFVEVASRGNDLLIRTPRAVISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQ 342

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE--- 331
            +I++ +  + V  + +   L +     D+G++   + + Y+   + +  +++YL +   
Sbjct: 343 AAIVTDLDSRGVDFTFADGTLKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCK 402

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++DN S+       VV  ++S+ S   ++  D  +           YV+MPM
Sbjct: 403 VMDNEST-------VVMEIESAKSPALLQTDDGYA-----------YVIMPM 436


>gi|71914140|gb|AAZ54042.1| DNA polymerase III, beta subunit [Thermobifida fusca YX]
          Length = 372

 Score =  101 bits (251), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/383 (24%), Positives = 173/383 (45%), Gaps = 29/383 (7%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIPASVDV--CGSITV 69
           +    R +  + ++PV   +LL A+D  G   +  S  + E++  +   VD+   G I V
Sbjct: 6   VAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVSVDVDIDEPGRILV 65

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
           S  LL +IVR L         + +  G +V +S G + F + + P  ++P+      +  
Sbjct: 66  SGKLLAEIVRNLPP----QTVEVSTDGAKVVVSCGSAKFTILTLPVEDYPTLPAMPALTG 121

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             L S      V +   A   ++    L G+   I    + L  V+TD +RLAV E+   
Sbjct: 122 SVL-SDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VSTDRYRLAVRELTWT 178

Query: 190 AQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNIESLSMSVRLI 242
            +   + ++ +VP K + +  + L+   + + ++LS      E  I         + RL+
Sbjct: 179 PEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIGFEGGGRRTTTRLL 237

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           +GEFP Y+ ++P S +    V      +AV RVS+++  R   ++LS +SD+L +     
Sbjct: 238 EGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVAE-RNTPLRLSFTSDRLVLEAGTG 296

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +  +A+E ++       + I FN  +LL+ ++ I S     D    +  +S     I GK
Sbjct: 297 EEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIES-----DVAHLQFTTSTKPAIITGK 351

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
             D     D +    Y++MP+RI
Sbjct: 352 PADDGTASDYR----YLIMPVRI 370


>gi|291455694|ref|ZP_06595084.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213]
 gi|291382622|gb|EFE90140.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213]
          Length = 374

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 183/391 (46%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ + + P+   V L+A DG L+  A   EI     I A 
Sbjct: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS  V   LL DI + L+  ++ ++   +  G+ + I+ G S F LQ  P++E+P 
Sbjct: 61  VDEVGSALVLGKLLADITKSLR--SEKTYLTTD--GSTLTITSGKSKFTLQLMPDAEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +   ++ +      V +   A++ EE R  L G+      +D K+   +TD  R
Sbjct: 117 LPVVPPMLG-QVDAQTFVQAVNQASVAVSREENRPVLTGVRMQF--QDDKVIMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIESLS 236
           LA A      Q A + +I + R   G +L+ +  S D    + L   +++   L  E+  
Sbjct: 174 LARAAFTWTPQDANVDTITLVR---GSLLKDVARSLDEHQNIRLDFDADNPTLLGFENAG 230

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +       +  VN  +L  A+ RV++++  R   +++  +  +
Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAE-RNAPIRMMFTGQE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  + D  +A E++++  +   + + FN  YL E +  I+     +  V  ++ +  
Sbjct: 290 LALSAGSADEAQANETLDIDMDGDEITVAFNPSYLKEGLSAIA-----EPFVRIKMTTPV 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V   G+    + + D  ++  Y+L+PMR 
Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372


>gi|227873172|ref|ZP_03991463.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841003|gb|EEJ51342.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 374

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 85/369 (23%), Positives = 180/369 (48%), Gaps = 17/369 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++ +++D+L  L    + +  K T+ +   +L+ A +G + +  +  +  I    P  
Sbjct: 1   MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIESICPGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I + A L  +I+++L      +     E      I    S F +      EF  
Sbjct: 61  ILEPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDEFTS 120

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            PS +++E V   E++   L+N++ +T F+ A+ E    + G +F I +    + A+  D
Sbjct: 121 LPSVEKQEIV---EISQLSLRNMINQTIFSTASGENNKKMTGEYFEIIDNQFSITAL--D 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
           GHR+A+ + ++ ++     S IVP++ + E+ +I+S   +  V++  S+  +  + E   
Sbjct: 176 GHRIAIRKTEL-SESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKL 295
           +  +L++GE+ + + ++    + ++R+N     + +DR  I++     Q + L +    L
Sbjct: 235 VVTQLVEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSL 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            + + + D+G+    M V      + I FN  YL++ + NI  +EV   ++ F +  S S
Sbjct: 295 SLKIVS-DIGRMDAEMPVQQEGKDLLIGFNPTYLMDALQNIEEEEV---DLYFTI--SRS 348

Query: 356 SVFIRGKDK 364
            VFIR +++
Sbjct: 349 PVFIRDQEE 357


>gi|294630339|ref|ZP_06708899.1| DNA polymerase III, beta subunit [Streptomyces sp. e14]
 gi|292833672|gb|EFF92021.1| DNA polymerase III, beta subunit [Streptomyces sp. e14]
          Length = 376

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 178/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  + V++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPNATG-TVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +   + ++ +VP K + +  + L+S D SV ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGD-SVILALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++   +   + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ +   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPAVDAEADDAYK----YLIMPVRL 374


>gi|218233276|ref|YP_002367414.1| DNA polymerase III subunit beta [Bacillus cereus B4264]
 gi|218161233|gb|ACK61225.1| DNA polymerase III, beta subunit [Bacillus cereus B4264]
          Length = 376

 Score =  100 bits (250), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 139/288 (48%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEIILSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLAS 280


>gi|225575692|ref|ZP_03784302.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037096|gb|EEG47342.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM
           10507]
          Length = 369

 Score =  100 bits (249), Expect = 3e-19,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 189/396 (47%), Gaps = 46/396 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++ + +  A + +  K T+P+   +L+ A    ++   +  E+ I   +  +
Sbjct: 1   MKIICSKSNLSKGVNIALKAVPSKTTMPILECILIDATANQIKFVTNDMELGIETMVDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +I+RKL D   ++   +++L T +       N           P 
Sbjct: 61  ISEKGMIALDAKIFSEIIRKLPDN-DVTIQTDDKLNTLITCEKAKFN----------IPG 109

Query: 121 TKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              E++VY        S  L+   LK ++ +T F++A  E    + G  F I +  LK+ 
Sbjct: 110 KSGEDFVYLPMIERDASITLSQFTLKEMIRQTIFSIAVNENNKLMTGELFEIKDNYLKI- 168

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLN 231
            V+ DGHR+A+  +++ A+  +   IIVP K + EI +ILS + D  V +  +++ I   
Sbjct: 169 -VSLDGHRIAIRRMEL-AKDYEDRKIIVPGKTLNEISKILSGEVDDQVTIYFTKNHILFE 226

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKL 288
            +   +  RLI+GE+     ++    + +L++N       +DR +++  VR    + + +
Sbjct: 227 FDQTLVLSRLIEGEYFRIDQMLSSDYETKLKINKKEFLSCIDRATLL--VREGDKKPIII 284

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVV 347
           +++   + +T+D+  MG   E +++      + I FN K+L++ +       V+DD E+ 
Sbjct: 285 NITDTSMVLTIDSA-MGSMDEEIDIVKEGKDILIGFNPKFLIDAL------RVIDDEEIT 337

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             L +  +  FI          KD+K +  Y+++P+
Sbjct: 338 IYLVNPKAPCFI----------KDDKGSYTYLILPV 363


>gi|229116204|ref|ZP_04245594.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3]
 gi|228667036|gb|EEL22488.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3]
          Length = 376

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 92/353 (26%), Positives = 166/353 (47%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V    I + L    + I  K  IP+   + + A+   + + AS   + I   IP S
Sbjct: 1   MEFIVNHKHITQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  IEDEQIATILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QIITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P +EFP+    E     ++ +  L  + ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 LPANEFPNVPLIEDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLV 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  +++  AK  + IVP   + E+L++++S    V + LS+S +    
Sbjct: 175 CAATDSHRLAIRET-LISSDAK-ANCIVPSATISELLKLMNSHTEFVYIYLSDSHVIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V    + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  V     E  ++I F+ +++++ +  I+ + V
Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAITEEMV 345


>gi|126143269|gb|ABN80081.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 196

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 54/204 (26%), Positives = 120/204 (58%), Gaps = 8/204 (3%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+    N   L+   VATDG+RLA+ ++ +   I    S+I+PRK + E+ R+L+
Sbjct: 1   RYYLNGMLLEKNNTFLR--TVATDGYRLAITKIFLKKDIIPF-SVIIPRKGILELYRLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            +   + + + ++ I ++I  L  + +LI+G++P+Y++++     + + +NC  L++++ 
Sbjct: 58  IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESILINIKKEPIILNCQLLKKSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I+S  +   +++ +  ++L +  DN +   A +  N+ Y+   + +  N  Y+++++
Sbjct: 118 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 177

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + I+S     + +   L+ SN+S+
Sbjct: 178 NTITS-----ENIFLYLNESNNSI 196


>gi|154508241|ref|ZP_02043883.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797875|gb|EDN80295.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC
           17982]
          Length = 378

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 103/395 (26%), Positives = 180/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A    L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
           VD  G + VS  LL DI + L     +S     EL G +VN+  G S+F L   P  E+P
Sbjct: 61  VDEAGEVLVSGRLLADISKSLPS-KPVSV----ELDGQKVNLVCGSSHFTLAVMPLDEYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +       + SS L   V +   A + ++    L G+   IN   + L  +ATD +
Sbjct: 116 LLPSQPTGVG-AIDSSTLSQAVSQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRY 172

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLN 231
           RLA+ E+D       +  + +V  + + ++ + ++S  + V+V LS        S I   
Sbjct: 173 RLAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFT 231

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +    +  L+DG++P  + + P +   +  V+   L +AV R+S+++  R  +V+L+ +
Sbjct: 232 AQGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVAE-RKTSVRLAFT 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRL 350
             +L +     D  +A E++    N   +   FN ++L   ID +   +V+D D V F  
Sbjct: 291 EGQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFL---IDGL---QVLDTDYVRFGF 344

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384
                   I G+    K   + +V  F Y+LMP+R
Sbjct: 345 THPTKPAVITGQ----KKADEGEVTQFRYLLMPIR 375


>gi|258510497|ref|YP_003183931.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477223|gb|ACV57542.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 370

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 166/352 (47%), Gaps = 14/352 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +   L    RI + +    V   VL++A  G + + A   ++ +   + AS
Sbjct: 1   MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A L  ++VR+L  G   ++    + L   +++  G ++  L  F   EFP
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGTVDVATIAPHHLSASIDV--GTTHAELHGFDPEEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAVATDG 178
              + + +   EL++  L   VE   +A A E   R  L G++  +  E  KL  +ATDG
Sbjct: 119 ELPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVY--VGYEGGKLIWMATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235
            RLA     +   + +  SI   +PR+A+ E+ R+L +  D+ ++V  S S +    +++
Sbjct: 177 LRLA----RVSQTVEREMSIRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNV 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL  GE+P+   V+P       RV    L +A++RV+I++      V L +    L
Sbjct: 233 QLFGRLYQGEYPDTSRVMPREFAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVL 292

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +T  + + G A E +  V +    + I  N +Y+L+ +    S + +  +V
Sbjct: 293 ELTSRSAERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQMQV 344


>gi|313892141|ref|ZP_07825734.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII
           345-E]
 gi|313119279|gb|EFR42478.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII
           345-E]
          Length = 369

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 88/352 (25%), Positives = 166/352 (47%), Gaps = 22/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ D++  L    R  + K T   +    + A D  +E +A+   + I     A 
Sbjct: 1   MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP---ESE 117
           ++  G   ++A  L   +R +         K+NE  T V    G    Y+  FP     +
Sbjct: 61  IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQ---YIAKFPTRLHDD 115

Query: 118 FPSTKEEEYVYSFELASSVLK--NLVERT---HFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP     E +     + ++LK  +LVE T    ++ A ++ +    GI F I  +D K  
Sbjct: 116 FP-----EILNMQNTSKAILKCKDLVEMTNLVQYSAANDKQKPLFTGILFEI--KDKKFI 168

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLN 231
             AT+ HRLAV E+++         IIVP   + +++++L   +D  V+++ +++ +   
Sbjct: 169 MAATNTHRLAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFT 228

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
             +      LI+GE+P+Y+ VIP   D +  ++      AV  VS +S  V  Q +    
Sbjct: 229 FNNTYFITSLINGEYPDYKRVIPSHFDAKAELDLNEFIDAVRFVSPISRDVNYQTINFFF 288

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           S+DKL +  ++PD+GK+  ++ +      ++I FN  Y+ +I+ +   ++++
Sbjct: 289 SNDKLEIYEEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKII 340


>gi|289166911|ref|YP_003445178.1| DNA polymerase III, beta subunit [Streptococcus mitis B6]
 gi|288906476|emb|CBJ21306.1| DNA polymerase III, beta subunit [Streptococcus mitis B6]
          Length = 378

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 172/354 (48%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           +  ++ ++  L+ L    R I  KN IP+   + +   N+G+  I ++G +I I   I  
Sbjct: 2   IHFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGVTLIGSNG-QISIENFISQ 60

Query: 60  S-------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+
Sbjct: 61  KNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLK 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                ++P  +E        L + +LK ++  T FA + +E R  L G+ F +++   +L
Sbjct: 117 GKDSEQYPRIQEISVSTPLVLETKLLKKIINETAFAASIQESRPILTGVHFVLSQHK-EL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I   
Sbjct: 176 KTVATDSHRLSQKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFR 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSL 290
            E++S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS      VKL +
Sbjct: 235 SENISFYTRLLEGNYPDTDRLIPTDFNTTITFDVINLRQSMERARLLSSATQNGTVKLEI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               +   V +P++GK  E ++      E  + I FN  YL++ +  ++S++V 
Sbjct: 295 KGGIVSAHVHSPEVGKVNEEIDTDQVIGE-DLTISFNPTYLIDSLKALNSEKVT 347


>gi|330959579|gb|EGH59839.1| putative DNA polymerase subunit [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 369

 Score =  100 bits (249), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 98/394 (24%), Positives = 180/394 (45%), Gaps = 34/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++ SD+   L    R+ +RK T  V  H L++ +   L + A   + +++ +IPA 
Sbjct: 1   MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIKVDATGLVLSAHNGQKQMSLSIPAD 59

Query: 61  VDVCG----SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPE 115
           +        ++ V A     ++  L   A +S  F E +L     IS   S F L + P 
Sbjct: 60  LFTLQGDGFAVCVPAVKFDQVISALAKEAMVSIQFAEPKL----VISAARSRFTLATIPA 115

Query: 116 SEFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             FP  +   ++      +A   L   V +  F  A  ++R  LNGI F   +  L L A
Sbjct: 116 DHFPVMEFTADQSKGELNIAGITLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLLTLAA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
             TDG RL V +V +  +   M   I+P   + ++ + + + +  V+V+ S S      E
Sbjct: 176 --TDGLRLGVIDVPVSGE--PMQDFILPSSCIEDVCQFVGTGN--VQVATSGSMARFTRE 229

Query: 234 SLSMSVRLIDGEFPNYQN-VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
              +  +L++G+FP+Y+  VI        R+   +   A+ RV +MS   +  V+L++S+
Sbjct: 230 GGVLHTKLVEGKFPDYRKLVIAAERGDVARIVRDDFAGAMARVGLMSEGAVSLVRLAVSA 289

Query: 293 DKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + + +V       A + +   Y+   ++I FN     EI+ ++ + E+   +++F   
Sbjct: 290 DSISIHSVGGHAEDVADDVLACDYHAESLEIGFNGSLAGEIVRSLGATEI---DLIF--S 344

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S   +R +D  S +         +VLMP+R+
Sbjct: 345 GPASGTLLRARDLPSHS---------FVLMPVRL 369


>gi|218296135|ref|ZP_03496904.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
 gi|218243512|gb|EED10041.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
          Length = 370

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 78/349 (22%), Positives = 158/349 (45%), Gaps = 31/349 (8%)

Query: 28  PVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87
           P+  ++ L+  +  L I+ +  E+++   +PA  +  G + V A      +R +++    
Sbjct: 27  PLWTYLYLEGREKELVIRTANEEMDLEVRLPAMGEEGGPVLVPAS---PFIRAVENAPG- 82

Query: 88  SFFKENELGTEVNISHGDSNFYLQSFP---------ESEFPSTKEEEYVYSFELASSVLK 138
               E+E   EV I   +    ++++P            FP+  E +      + +  L 
Sbjct: 83  ---DEDEEDKEVIILIQEGQVEVRAWPWRATINAAGPEGFPAWPESDTALRTRMDAQDLL 139

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
             + +  +A++ E  R    G+    ++   +  AVA+DG+RLA+ +++      K    
Sbjct: 140 RALSQVRYAVSRESWRAIFRGVQLEFSDRGFR--AVASDGYRLALFDLERPQPFTK--KA 195

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----LSMSVRLIDGEFPNYQNVIP 254
           +VP ++V E++R+L   +  V +++  S + +        + ++VRL+ GEFP+Y+ VIP
Sbjct: 196 VVPARSVDELMRVLRGAEGEVDLAVGTSTMTMAAWQEKGVVRIAVRLMPGEFPDYERVIP 255

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY 314
                 + +     R+A+ RVSI+++     V LSL   +  +  +  D GK  E + V 
Sbjct: 256 KEFPLTVTLEAEPFREALKRVSILANKENHRVDLSLEGKRALLFAEG-DYGKGQEEIPVS 314

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
               PM + ++ ++ L+ +        V+ EVV R     +   I   D
Sbjct: 315 LEGAPMSLAYDARHFLDAVSR------VEGEVVMRFSGQFTPTLIEPAD 357


>gi|318058970|ref|ZP_07977693.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actG]
 gi|318079378|ref|ZP_07986710.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actF]
          Length = 376

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
            +  G++ VS  LL DI R L +       +  E+   G    ++ G S F L + P  E
Sbjct: 61  TEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVTCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +  ++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPSATG-TVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     + A++ ++ +VP K + +  + L++ D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPEDAEISAVALVPAKTLLDTAKSLTNGD-NVTIALSGSGSGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ +   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374


>gi|229173346|ref|ZP_04300890.1| DNA polymerase III, beta subunit [Bacillus cereus MM3]
 gi|228610040|gb|EEK67318.1| DNA polymerase III, beta subunit [Bacillus cereus MM3]
          Length = 376

 Score =  100 bits (248), Expect = 4e-19,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 160/357 (44%), Gaps = 28/357 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + +  +   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVNKAISTKAIIPILSGIKITVDQSGITLIASDSNIFIEKLIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            +          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  TEGDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQI----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P  EFP+    +     +  +  L  + ++T FA+A  E R  L G+  HI  E  KL 
Sbjct: 117 LPAYEFPNVPLIDDHAKIQAETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELEHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I  ++    S IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETIISTEVKA--SCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS------VRIQAV 286
            + ++  RLI+G++PN  ++IP      + V+   + Q VDR S++SS      V ++ +
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRKRILQGVDRSSLLSSEWANNNVNLEII 292

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
             S     + ++ +   +GK  E+  +     E  ++I F+ +++++ +  I  + V
Sbjct: 293 DES----TIKISSNASQIGKISETQQIDEIQGEKQLNISFDGRFMMDALKAIKEETV 345


>gi|295837756|ref|ZP_06824689.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74]
 gi|295826661|gb|EFG64969.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74]
          Length = 376

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
            +  G++ VS  LL DI R L +       +  E+   G    ++ G S F L + P  E
Sbjct: 61  TEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVTCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +  ++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPSATG-TVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     + +++ ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPEDSEISAVALVPAKTLLDTAKSLTSGD-NVTIALSGSGSGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ +   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374


>gi|125622884|ref|YP_001031367.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|3913511|sp|O54376|DPO3B_LACLM RecName: Full=DNA polymerase III subunit beta
 gi|2909714|gb|AAC12964.1| polymerase III subunit DnaN [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491692|emb|CAL96610.1| beta subunit of DNA polymerase III [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069622|gb|ADJ59022.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 380

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ ++     L    + I  K TIP    + ++  +  + +  S  +I I   +PA 
Sbjct: 2   IKFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPAD 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GS+ + A    ++V +L +   + F ++ +   +V ++ G S   L+  
Sbjct: 62  NKDASMLISGTGSVLLEAAFFENVVSQLPE-VTLEFIEKEQ--KQVLLTSGKSEITLKGL 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC 172
               +P  +E     S ++   VLK +   T FA++T+E R    G+    ++  +LK  
Sbjct: 119 DSEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++   + +     K   +I+P K++     + ++ +  +++ +S S++    
Sbjct: 177 AVATDSHRMSQRLLPLEDTDLKF-DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQN 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRIQA-VKLS 289
           E++S   RLI+G +P+   +IP   D  L +  +   LR  +DR  +++ +     VKL+
Sbjct: 236 ETISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           +S D +  T ++P++G   E +     E   + I FN +YL++ +  I + EV
Sbjct: 296 VSGDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEV 348


>gi|228921359|ref|ZP_04084683.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838304|gb|EEM83621.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 376

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 77/288 (26%), Positives = 137/288 (47%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQSLSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIKKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++     V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATISELLKLMNGNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLAS 280


>gi|325478849|gb|EGC81959.1| DNA polymerase III, beta subunit [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 370

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 88/339 (25%), Positives = 171/339 (50%), Gaps = 23/339 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + ++++ +  A + + +   I +   +  +  +  L + A   EI I  ++ A 
Sbjct: 1   MKFRINQQELIDAINIASKAVSKSTNIQIHELIYFECKENSLYLMAFDGEISIKTSVDAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFP----- 114
           VD  G + V A L+ +IVRKL  D   IS    N+ G +++I    SNF L +F      
Sbjct: 61  VDEEGEMAVKASLISNIVRKLPNDLVTIS----NKEG-KISIRCSSSNFNLIAFDYFEKN 115

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + E P T         E+A+ VLK  + +T FA   +E +  L GI F + E  L +  V
Sbjct: 116 DIEIPETT------PIEIANDVLKRSISQTEFATTLDETKLALTGILFELKEGSLNM--V 167

Query: 175 ATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           A DG+R+A+ +V +        S  I+P++++ E  RI+ ++D+  K+  +++ +    E
Sbjct: 168 ALDGYRVALKKVKLDYPTDYEDSEYIIPKRSLIEWSRII-TEDTKTKLYKNDNDLIFVSE 226

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           + +M  ++ID  F +Y+N+I   ++  + ++   L  ++DR  +++   R   +K+ ++ 
Sbjct: 227 NTTMQCKVIDKNFIDYRNIINDISETTIILDKRELINSLDRAQVLADPGRANLIKIEVAD 286

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
             + +   N ++G   E ++V      +DI FN +Y+ E
Sbjct: 287 SSMVIK-SNSEIGDVKEVIDVEQKGENLDIAFNARYMQE 324


>gi|313904726|ref|ZP_07838100.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6]
 gi|313470519|gb|EFR65847.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6]
          Length = 369

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 189/393 (48%), Gaps = 36/393 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++ D+   +G   + +  K T+P+   +L+ A+   ++  A+  E+ I   +P  
Sbjct: 1   MKLIFDQQDLANSVGIVMKAVPSKTTMPILQCILIDASFSQIKFTANDMELGIETIVPGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I + A +  DIVRKL +        EN++ T   I+   + F +      +F  
Sbjct: 61  IAEKGKIALDAKIFSDIVRKLPNSRVTIETNENDVTT---ITCEKAKFDIPGKSGDDFAD 117

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P     +++   +L+   L+ ++ +T F++A  E    + G  F ++   LK+  VA D
Sbjct: 118 LPKIDRNDFISISQLS---LREVIRQTIFSIAVNENNKLMTGELFEVSNNKLKV--VALD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
           GHR+A+  ++I ++ +    ++VP K + EI +ILS + D  V +  S++ +    +   
Sbjct: 173 GHRIAIRNLEISSECSP-KRVVVPGKTLNEISKILSGEADDLVTIYFSDNYLLFEFDDTV 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSD 293
           +  RLIDGE+     ++    + ++ VN       +DR +++  VR      V + ++ +
Sbjct: 232 VLSRLIDGEYFKIDQMLSSDYETKIEVNRQEFISCIDRATLL--VRESDKMPVIIDITDE 289

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDS 352
           ++ + +D+  +G   E +++      + I FN K+LL+ +       V+DDE V     +
Sbjct: 290 QMELQIDSA-IGSMDEEIDIEKTGKDITIGFNPKFLLDAL------RVIDDERVSIFFVN 342

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  FIR          D + N  Y+++P+ I
Sbjct: 343 AKAPCFIR----------DEEGNYIYLILPVNI 365


>gi|325846374|ref|ZP_08169343.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481558|gb|EGC84598.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 370

 Score =  100 bits (248), Expect = 5e-19,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 163/333 (48%), Gaps = 11/333 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++ D+   +  A + + RK  I +   +  +A +  L + +S  EI I   +  +
Sbjct: 1   MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVSCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + ++A+++ +IVRKL D       K   + +++ I    S F + +F   E   
Sbjct: 61  VIEEGEMAINANIISNIVRKLPD----ELIKIEVVDSKIKIKCNGSKFNILAFDYYEKKD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K  +  Y  E+ +  LK  + +T FA + +E +  L GI F +   D  L  VA DG+R
Sbjct: 117 LKVPDVDY-LEIQNDKLKRSISQTEFATSLDETKLALTGILFELM--DGYLNFVALDGYR 173

Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +    +   S +I+PRK++ E  RI+   +   K+   +  I       +M  
Sbjct: 174 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           ++ID  + +Y N+I   +   L V+   L  +++R  ++++  R   +K+++  DK C+ 
Sbjct: 233 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDK-CLI 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
             N ++G   E + +      + I FN +YL+E
Sbjct: 292 ESNSEIGDLKEIIQIQKEGEDVKIAFNARYLIE 324


>gi|329121619|ref|ZP_08250240.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM
           19965]
 gi|327468774|gb|EGF14251.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM
           19965]
          Length = 369

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 165/352 (46%), Gaps = 22/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ D++  L    R  + K T   +    + A D  +E +A+   + I     A 
Sbjct: 1   MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP---ESE 117
           ++  G   ++A  L   +R +         K+NE  T V    G    Y+  FP     +
Sbjct: 61  IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQ---YIAKFPTRLHDD 115

Query: 118 FPSTKEEEYVYSFELASSVLK--NLVERT---HFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP     E +     + ++LK  +LVE T    +A A ++ +    GI F I  +D K  
Sbjct: 116 FP-----EILNMQNTSKAILKCKDLVEMTNLVQYAAANDKQKPLFTGILFEI--KDKKFI 168

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLN 231
             AT+ HRLAV E+++         IIVP   + +++++L   +D  V+++ +++ +   
Sbjct: 169 MAATNTHRLAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFT 228

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
             +      LI+GE+P+Y+ VIP   D +  +       AV  VS +S  V  Q +    
Sbjct: 229 FNNTYFITSLINGEYPDYKRVIPSHFDAKAELYLNEFIDAVRFVSPISRDVNYQTINFFF 288

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           S+DKL +  ++PD+GK+  ++ +      ++I FN  Y+ +I+ +   ++++
Sbjct: 289 SNDKLEIYEEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKII 340


>gi|21222286|ref|NP_628065.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)]
 gi|256786614|ref|ZP_05525045.1| DNA polymerase III subunit beta [Streptomyces lividans TK24]
 gi|289770507|ref|ZP_06529885.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
 gi|118804|sp|P27903|DPO3B_STRCO RecName: Full=DNA polymerase III subunit beta
 gi|153241|gb|AAA26735.1| DnaN [Streptomyces coelicolor A3(2)]
 gi|8247660|emb|CAB92998.1| DNA polymerase III, beta chain [Streptomyces coelicolor A3(2)]
 gi|289700706|gb|EFD68135.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
          Length = 376

 Score =  100 bits (248), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           ++  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  IEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  + V++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPEATG-TVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +   + ++ +VP K + +  + L+S D  V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGD-QVILALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374


>gi|116510845|ref|YP_808061.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106499|gb|ABJ71639.1| DNA polymerase III, beta subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 380

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/353 (23%), Positives = 169/353 (47%), Gaps = 18/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K ++ ++     L    + I  K TIP    + ++  +  + +  S  +I I   +PA 
Sbjct: 2   IKFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPAD 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GS+ + A    ++V +L +   + F ++ +   +V ++ G S   L+  
Sbjct: 62  NKDASMLISGTGSVLLEAAFFENVVSQLPE-VTLDFIEKEQ--KQVLLTSGKSEITLKGL 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLC 172
               +P  +E     S ++   VLK +   T FA++T+E R    G+    ++  +LK  
Sbjct: 119 DSEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELK-- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HR++   + +     K   +I+P K++     + ++ +  +++ +S S++    
Sbjct: 177 AVATDSHRMSQRLLPLEDTDLKF-DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQN 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRIQA-VKLS 289
           E++S   RLI+G +P+   +IP   D  L +  +   LR  +DR  +++ +     VKL+
Sbjct: 236 ETISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTIMTTNGTVKLT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           +S D +  T ++P++G   E +     E   + I FN +YL++ +  I + EV
Sbjct: 296 VSGDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKAPEV 348


>gi|329938637|ref|ZP_08288033.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus
           M045]
 gi|329302128|gb|EGG46020.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus
           M045]
          Length = 376

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 173/395 (43%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS  +        +   V  + V++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPSLPQMPNATG-TVPGEVFASAVQQVATAAGRDDTLPVLTGVRIEIEGDSVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKV----SLSESRIHLNI 232
            +R AV E     +   + ++ +VP K + +  + L+S D  +         E  I    
Sbjct: 171 RYRFAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALAGSGAGEGLIGFEG 230

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS   
Sbjct: 231 AGRRTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFEQ 289

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351
             L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V      
Sbjct: 290 GVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSFT 343

Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
           +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 344 TSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374


>gi|163838771|ref|YP_001623176.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC
           33209]
 gi|162952247|gb|ABY21762.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC
           33209]
          Length = 408

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 96/388 (24%), Positives = 182/388 (46%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  VER  + + +  A R +  +  +PV   +LL+A+ G L + +   EI     IPA 
Sbjct: 35  VKFRVERDVLNDAVSWAARALSPRPPVPVLSGLLLKASAGTLSLSSFDYEISARLEIPAD 94

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I VS  LL DI R L   A +    +   G++V ++  +S F L + PE+++P 
Sbjct: 95  IAEEGTILVSGRLLADICRSLPS-APVEVSTD---GSKVILTCRNSRFNLATMPEADYPE 150

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 + S  +A       V +   A + ++    L G+   I E+DL +  +ATD +R
Sbjct: 151 LPALPKI-SGTVAGDAFAKAVTQVTVAASKDDTLPILAGVKVEI-EDDL-ITLLATDRYR 207

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E++    +  +  S +V  K + E+ + L      + +SLSE    +  ES     
Sbjct: 208 LAMRELNWKPAVPGISTSALVKAKTLSEVAKTLGGA-GEINISLSEDSELIGFESGGRRT 266

Query: 240 R--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              L+DG++P  +++ P +      V  + L +AV RV++++    Q V+L+ +  ++ +
Sbjct: 267 TSLLVDGDYPKIRSLFPENTPIHATVETSALVEAVRRVALVAERNTQ-VRLAFTDGQVGL 325

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E++        + + FN  YL E ++   S       V F   S+    
Sbjct: 326 DAGTGEDAQASEALEAALTGEEITVAFNPHYLSEGLNAFES-----KYVRFSFTSAPKPA 380

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +D    +++D+     Y++MP+R+
Sbjct: 381 MMTAQDSIDGDDQDHY---RYLVMPVRL 405


>gi|297625206|ref|YP_003686969.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296920971|emb|CBL55508.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 386

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 104/406 (25%), Positives = 185/406 (45%), Gaps = 43/406 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITVER  + E +    R +  + ++P+   +L++A    L + +   E      I A 
Sbjct: 1   MKITVERDVMAEAVAWVARSLPNRPSVPILAGLLMRATGSQLVLSSFDYETSARITIDAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   VS  LL +I R L +  + + F  N     V +  G + F LQ  P  ++P 
Sbjct: 61  VDEEGEALVSGRLLSEIARSLPN--RPARFTANS--NHVELVCGSARFTLQMLPVEDYPQ 116

Query: 121 ----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
                 E   V S E   SV + +V     A   +E+     G+   IN++ L L  +AT
Sbjct: 117 LPEMPAESGTVPSDEFTRSVAQVVV-----AAGRDELLPVFTGVRIEINDDRLSL--LAT 169

Query: 177 DGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHL 230
           D +R+A+ E+       +  S  +VP + + E  R +   + +V ++LS     E  I L
Sbjct: 170 DRYRMALKELTWNPATTQAESAALVPARVLSESARSMGGGE-AVALALSNGIEGEGLIGL 228

Query: 231 NIESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           + E       ++ RL+DGEFP  ++++    +  +RV    + ++V RVS+++  R  +V
Sbjct: 229 SGEGAGGRRELTTRLLDGEFPKVRHLMDIKPNVTVRVKTEEVLESVKRVSLVAE-RNTSV 287

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM-----NVYYNECPMD-ICFNYKYLLEIIDNISSDE 340
           ++ +  D++ +     D  +A E++     NV   E  +  + FN +YL + +  + +  
Sbjct: 288 RMVIEDDRIALDAATGDQAQATEAIEAQVNNVAGGEMAVSAVGFNPRYLTDALSALDT-- 345

Query: 341 VVDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
                V F   +      ++G  D D +   D K    +V+M MR+
Sbjct: 346 ---PYVQFSFTAPGKPCLVQGLPDVDGEPEADYK----HVIMLMRL 384


>gi|224437091|ref|ZP_03658072.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818]
 gi|313143562|ref|ZP_07805755.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818]
 gi|313128593|gb|EFR46210.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818]
          Length = 353

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 87/343 (25%), Positives = 161/343 (46%), Gaps = 17/343 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ +S +   L +    +++++   ++ H+  +A D  L +KA+  EI +   I   
Sbjct: 1   MKISLPKSLLETALTNCQNFLDKRDRSQITSHICFEAKDDKLILKATDYEIWLESHINIQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ T +   + DI+++L+DG      KE+ L    +IS G S   L  F   EFP 
Sbjct: 61  PQAQGNATANGKQILDIIKRLKDGDINLEAKEDTL----HISQGRSRTKLPMFNADEFPR 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      + +      ++R + A+ T   +Y LNG    I E       VATD  R
Sbjct: 117 FPEYDNNAQINIEAQKFLTSLKRINPAVDTNNPKYELNGSLLDIKEYGFNF--VATDTRR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV E    +Q     S+I+P+KA+ EI R+       +++  + + + L     +   +
Sbjct: 175 LAVIEYK--SQSINALSLIIPKKAISEISRLFI---DHLEIYHNPTHLILKNNEYTFYTK 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLR-QAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           LI+G+FP+Y+ +IP    KE +      + + VD +  + S+    +K++LS +++    
Sbjct: 230 LINGKFPDYEKIIP----KEFKYKILLPKDKFVDALQFVKSLA-NNIKITLSPNEVLFES 284

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            N + G+A   +        + +  N KY+L+ +  I  +E  
Sbjct: 285 LNEESGEASTQIEAQTGIESLTLGINSKYILDFLSQIDGNEFT 327


>gi|146317664|ref|YP_001197376.1| DNA polymerase III subunit beta [Streptococcus suis 05ZYH33]
 gi|223933959|ref|ZP_03625918.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591]
 gi|253750925|ref|YP_003024066.1| DNA polymerase III, beta chain [Streptococcus suis SC84]
 gi|253752824|ref|YP_003025964.1| DNA polymerase III, beta chain [Streptococcus suis P1/7]
 gi|253754649|ref|YP_003027789.1| DNA polymerase III, beta chain [Streptococcus suis BM407]
 gi|302023111|ref|ZP_07248322.1| DNA polymerase III subunit beta [Streptococcus suis 05HAS68]
 gi|330831851|ref|YP_004400676.1| DNA polymerase III subunit beta [Streptococcus suis ST3]
 gi|145688470|gb|ABP88976.1| DNA polymerase sliding clamp subunit [Streptococcus suis 05ZYH33]
 gi|223897378|gb|EEF63780.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591]
 gi|251815214|emb|CAZ50778.1| DNA polymerase III, beta chain [Streptococcus suis SC84]
 gi|251817113|emb|CAZ54834.1| DNA polymerase III, beta chain [Streptococcus suis BM407]
 gi|251819069|emb|CAR44083.1| DNA polymerase III, beta chain [Streptococcus suis P1/7]
 gi|319757174|gb|ADV69116.1| DNA polymerase III subunit beta [Streptococcus suis JS14]
 gi|329306074|gb|AEB80490.1| DNA polymerase III subunit beta [Streptococcus suis ST3]
          Length = 378

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I   
Sbjct: 2   IQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A    ++V  + D   +  F E E   ++ ++ G S   L+  
Sbjct: 62  DENAGLLISSPGSILLEAGFFINVVSSMPD--LVLDFNEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + VLK  +  T FA +T+E R  L G+ F + E +  L  
Sbjct: 119 EAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTE-NKNLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ ++       ++++P +++ E   + +    +V+V  S ++I    E
Sbjct: 178 VATDSHRMSQRKL-VLDTSGDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
            +S   RL++G +P+   +IP         +  NLR +++R  ++S + +   VKL +++
Sbjct: 237 HISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIAN 296

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +   V++P++G+  E ++ V  +   + I FN  YL+E +   +S++V
Sbjct: 297 NVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTSEQV 346


>gi|152989755|ref|YP_001355477.1| DNA polymerase III subunit beta [Nitratiruptor sp. SB155-2]
 gi|151421616|dbj|BAF69120.1| DNA polymerase III, beta subunit [Nitratiruptor sp. SB155-2]
          Length = 354

 Score = 99.8 bits (247), Expect = 6e-19,   Method: Compositional matrix adjust.
 Identities = 94/365 (25%), Positives = 183/365 (50%), Gaps = 32/365 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + +S   ++L      +E+K+   ++ HV ++AN+ L+ +KA+  E   TG   + 
Sbjct: 1   MKIEIRKSLFEQVLTQIQPFLEKKDISQITSHVYIEANEKLI-LKATDYE---TGLKTSL 56

Query: 61  VDV-C---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D  C   G  T +   L DI+R L++       KEN L    +IS G S F L  F   
Sbjct: 57  EDFNCIKPGLATANGKKLLDIIRILKEDLITLETKENTL----HISQGHSRFKLPMFDAE 112

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP   + + +   ++        +++   A+ T   ++ LNG    I E+  K+  VAT
Sbjct: 113 SFPKFPDIDNLPKIDIKGGEFIASLKKIAPAIDTNNPKFELNGALIDIKED--KINFVAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  RLA+  V +   + K  ++I+P+KA+ EI ++       + +   E+ + +  E+  
Sbjct: 171 DTRRLAL--VTLEQSMEKAFNLIIPKKAINEIQKLFLD---DISMFYDETYLIIKNENYL 225

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL- 295
              +LI+G+FP+Y+ +IP + + E+ +   ++ +A+ +++I+S+     +KL+   D++ 
Sbjct: 226 FFTKLINGKFPDYERIIPKTLNYEMTLPKESMIEAIKQITIISN----ELKLTFLKDRII 281

Query: 296 --CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV----DDEVVFR 349
              ++ +N +    IE    +  +  M +  N KY+L+ + +I +D+ V    D ++ F 
Sbjct: 282 FRSLSEENIEAQTEIEVSTPFEEKFVMAV--NSKYILDFLAHIDTDQFVMGINDSDLPFE 339

Query: 350 LDSSN 354
           L  +N
Sbjct: 340 LKENN 344


>gi|210612900|ref|ZP_03289510.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787]
 gi|210151377|gb|EEA82385.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787]
          Length = 369

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 88/351 (25%), Positives = 174/351 (49%), Gaps = 17/351 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +++D+++ +    + +  K++  +   +LL+A    + +  +  E+ I   +  +
Sbjct: 1   MKIICKKADLVKAVQTVSKAVPMKSSTTILECILLRAEKEKITLTGNNLELGIETMMSGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           ++  GSI + A +  +IVRKL +G  +    E +  T V       N  ++S  E +  P
Sbjct: 61  IEEEGSIAIQAKVFGEIVRKLPEGDVVLETGEKDQAT-VRCKKTKYNLAVKSAEEYTCIP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + +  V   E     LK  + +T F++A    +  + G  + IN ++LK+  VA DGH
Sbjct: 120 DVERKNRVMISEFD---LKEAIRQTIFSVADTTTKKAMTGELWEINGKELKI--VALDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           R+++ +V +  +      +IVP K + E+++I+    +  V V  +E+ I   IE+    
Sbjct: 175 RISLRKVKLKKEYEPR-KVIVPGKNLAEMIKIIGGDPEKEVAVYFTENHIQFEIENTRAI 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDKLCM 297
            RLI+GE+   + ++      +++V    L++ +DR   ++     + + L++  + L +
Sbjct: 234 SRLIEGEYLKVEQLLSKDYGTKIKVQKKELQECIDRAGLLLKDDAKKPIILNIEENILSL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            V + +MG   ESM +      + I FN K+LLE++       V+DDE VF
Sbjct: 294 EVAS-NMGSMNESMFIVKEGEKLRIGFNPKFLLEML------RVIDDEEVF 337


>gi|170016360|ref|YP_001727279.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20]
 gi|169803217|gb|ACA81835.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20]
          Length = 377

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 86/342 (25%), Positives = 163/342 (47%), Gaps = 23/342 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   ++ L    R I  + TIP+  ++ +  ++  L +  S  +I I   I  S
Sbjct: 1   MQFSINRQAFIKSLNDVARAISSRTTIPILTNIKIVLSEDELILTGSNSDISIETRIEQS 60

Query: 61  VDVC-------GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                      G IT+ A    +IV+ L  D   ++       G   NI+ G S F +  
Sbjct: 61  DTTAQLVIKEKGGITLPATFFANIVKNLPADDLMLAVD-----GLRANITSGASAFTING 115

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  
Sbjct: 116 QDVRNYPQLPEMDDVQSLSVSAAQLIDIISQTKISASTQESRPILTGIHLALNGNDVK-- 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           AV TD HRL+   V +    A + + +I+P K+  E+  +L  +D  V + LS ++   +
Sbjct: 174 AVTTDSHRLSQRIVTLTGTEAHVSADVIIPAKSFNELQSLLEGQD-RVDIKLSANQAVFD 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           +   +   RL++G +P    +IP  +  EL ++   L  A++R S++S   R   V+L+L
Sbjct: 233 LGHTTFYSRLLEGNYPETDRLIPTESTTELTMDAGALLGAINRASLLSHESRNNVVQLTL 292

Query: 291 SSDKLCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYL 329
            +    +T  + ++G+  E +   +V   +  ++I FN  Y+
Sbjct: 293 KAGVATLTGTSQEVGQVQEELVTKSVAGED--LEISFNPDYV 332


>gi|163814986|ref|ZP_02206373.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759]
 gi|158449669|gb|EDP26664.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759]
          Length = 368

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 84/389 (21%), Positives = 195/389 (50%), Gaps = 28/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ ++++L+ +    + +  K T P+   +L++A+ G++++ A+  EI I   +  +
Sbjct: 1   MKISIRKANLLQGITTVSKAVSNKTTHPILSCILVEASGGIIKLTANDMEIGIESYVDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           V   G + + A L  D +RKL D ++IS   + E  T +     + N   +S  + S  P
Sbjct: 61  VIEDGKVALEAKLFSDFIRKLPD-SEISIESDKENKTLIKCERLEFNLPGKSGNDFSNLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +++Y+   + A   L++++ +T F+++  E    + G  F ++    +L  V+ DGH
Sbjct: 120 VVSKDKYITISQFA---LRDVINQTIFSISDNENNKLMTGELFEVSNN--RLSVVSLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           R+++  +D+    + +  ++VP K++ +I +I++   D  V +  +E+ I    ++  + 
Sbjct: 175 RISIRYIDLKGDNSDI-KVVVPGKSLSDISKIMNGGVDDPVNIYFNENNILFEFDNTKVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+    +++      ++++N      ++DR +++      + ++LS+    L +
Sbjct: 234 SRLIEGEYFRISHMLSVDYQIKMKINKREFLDSLDRATLLIKESDKKPIRLSIGDRNLGL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356
            + +  +G   + +++      + I FN K +++ +       V+DDE V    +++ S 
Sbjct: 294 KISSL-IGSLNDEIDIEKEGNNLVIGFNPKLIIDAL------RVIDDENVTIYFNNTKSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I          KD+  +  Y+++PM I
Sbjct: 347 CVI----------KDDAGSYIYLILPMGI 365


>gi|229161568|ref|ZP_04289548.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
 gi|228621813|gb|EEK78659.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
          Length = 376

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 91/354 (25%), Positives = 162/354 (45%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKALIPILSGIKIIADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    +NE    + I   +    L  
Sbjct: 61  IDDEQITTILKTGTIVVPAKYFIEIIKKMP--GDIIIKSKNE--QTITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F   E+P+    +     ++ +  L  + ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 FSADEYPNVPSIDNHVEIQMETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   V E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNMKA--NCIVPSATVNELLKLINSNLEIVFIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVIHMDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++       N   +GK  E+  +     E  ++I F+ +++++ +  I  + V+
Sbjct: 293 NESTIKVSSNASQIGKISETQQIDTIRGEKQLNISFDGRFMVDALRAIKEETVI 346


>gi|68535064|ref|YP_249769.1| DNA polymerase III subunit beta [Corynebacterium jeikeium K411]
 gi|260579562|ref|ZP_05847433.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|68262663|emb|CAI36151.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium K411]
 gi|258602333|gb|EEW15639.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 394

 Score = 99.8 bits (247), Expect = 7e-19,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 182/400 (45%), Gaps = 36/400 (9%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D    LG   R +  K T P+   V++ A+D  LE+     E+     I A V+  
Sbjct: 10  VPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFDREVSTRVRINAEVNEP 69

Query: 65  GSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G I V+  L  DIV  L +    I F      GT V +  G S F L +    ++P   E
Sbjct: 70  GKILVAGKLASDIVGSLPNKPINIEFD-----GTTVILKTGKSKFELPAMTIEDYPVLPE 124

Query: 124 EEYVYSFELASSVLKNL----VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                  E+  ++  NL    + +   A   ++    L G+   I+ E++ +  VATD  
Sbjct: 125 LP-----EVTGTIDPNLFAESISQVAVAAGRDDTLPMLTGVHVEIDGENVIM--VATDRF 177

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHL 230
           RLAV       AQ      +++P + + +  R +   ++  +++++       ++  + +
Sbjct: 178 RLAVRSFQWNPAQADAQAKLLIPARTLADTARSMDPNNTDPIEIAVGSGEDIGADGLLGI 237

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           + ES   + RL+D EFP ++ ++P ++     V    L++A+ RVSI++  R   +++  
Sbjct: 238 STESRHTTTRLLDAEFPKFRPLLPKTHTALASVEIAPLQEAIKRVSIVAE-RNSQIRMDF 296

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             + + ++    D+G A E+++  +   P+ I FN  YL E +  I +  VV     F +
Sbjct: 297 KDNTVTLSAGGSDVGSATETLDCAFAGEPLVIAFNPSYLKEGLAAIHTPRVV---FGFTM 353

Query: 351 DSSNSSVFIRG----KDKDSKNNKDNKVNAF-YVLMPMRI 385
            +S  ++ +       + D++ N       F Y+LMP+R+
Sbjct: 354 -ASRPAILLPDPGELPEADAEGNFATPETDFTYLLMPVRL 392


>gi|30020817|ref|NP_832448.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579]
 gi|229128034|ref|ZP_04257016.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4]
 gi|229145271|ref|ZP_04273660.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24]
 gi|29896369|gb|AAP09649.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579]
 gi|228638110|gb|EEK94551.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24]
 gi|228655309|gb|EEL11165.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4]
          Length = 376

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 136/288 (47%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKFLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V +  SES I    
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATINELLKLMNSNSEFVYIYFSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|160946605|ref|ZP_02093808.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270]
 gi|158446989|gb|EDP23984.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270]
          Length = 368

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 90/342 (26%), Positives = 163/342 (47%), Gaps = 11/342 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I + ++++L L+  + R I  KN   +   +L    D  L +K++  E+ I  +    
Sbjct: 1   MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTECK 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G + ++A ++ +IVRKL  D   I   +E       N         + S+PE  FP
Sbjct: 61  VEKEGEVLLNASMISNIVRKLPNDEVYIKVDREKVFIQSENAKFNIIAMDIYSYPE--FP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + + +     F +  ++LK   ++T FA A ++ R  LNG+   I  +++    VA DGH
Sbjct: 119 TFENK---VDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKNVDF--VALDGH 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A     I   I K   +I+P +A+ EI +I+  + S V VSL +       E+   S 
Sbjct: 174 RIAKRSFKIEEDIEK--KVIIPPRALNEISKIVP-EGSVVGVSLVKGSAIFTFENTIFST 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R+IDGE+ NY+ +    +  ++ V   +L  A++R +I+       +      D   +  
Sbjct: 231 RVIDGEYLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVE 290

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            + ++G   + +++      + I FN KY+LE +  I  D V
Sbjct: 291 GSSEIGDLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIEQDFV 332


>gi|323357955|ref|YP_004224351.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum
           StLB037]
 gi|323274326|dbj|BAJ74471.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum
           StLB037]
          Length = 383

 Score = 99.4 bits (246), Expect = 8e-19,   Method: Compositional matrix adjust.
 Identities = 89/349 (25%), Positives = 163/349 (46%), Gaps = 21/349 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R    E +    +++ ++N  P+   VL++AN+  L + A   E      I A+
Sbjct: 1   MKFHVNRDVFSEAVSFVVKLLPQRNPQPILAGVLIEANEQGLTLAAFDYEASARTTIEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+I V   LL DI  +L + A I    + + G  + ++ G + F L S P  E+P+
Sbjct: 61  VDEPGTILVHGRLLSDIASRLPN-APIQIAVDEDGG--ILLTCGSARFTLASMPVQEYPA 117

Query: 121 ----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
               T E   V + E A+++ +       FA + +++   L G+   ++   L L  VAT
Sbjct: 118 IPEVTGESGLVPADEFATAIAQ-----VAFAASRDDVTPVLTGVQLEVSGTRLSL--VAT 170

Query: 177 DGHRLAVAEVDIVAQIA---KMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR--IHL 230
           D +R+A+ E+      A   +  S +VP + + E+ +  +   D S+  S S  R  I  
Sbjct: 171 DRYRVALREIPWDGGQAASDETTSALVPARTLQEVGKTFAHGGDISIAFSGSGDREIIAF 230

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
              + +++  LI G FP  + + P   +    VN   L +AV RV+++   R   ++ + 
Sbjct: 231 TAANKTVTSLLIKGNFPPVRRLFPEQTEHHSVVNTAELAEAVRRVALVLD-RSAPLRFTF 289

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
            +D + M     +  +A E+++       + +  N +YLLE +  + S+
Sbjct: 290 GADGVSMDASGTEQARATETVDATLVGDEVTLGLNPQYLLESLGAVRSE 338


>gi|302559665|ref|ZP_07312007.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000]
 gi|302477283|gb|EFL40376.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000]
          Length = 376

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 175/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
            +  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  TEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  + V++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPNATG-TVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +   + ++ +VP K + +  + L+S D  V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGD-QVILALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ +   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374


>gi|239980786|ref|ZP_04703310.1| DNA polymerase III subunit beta [Streptomyces albus J1074]
 gi|291452644|ref|ZP_06592034.1| DNA polymerase III subunit beta [Streptomyces albus J1074]
 gi|291355593|gb|EFE82495.1| DNA polymerase III subunit beta [Streptomyces albus J1074]
          Length = 376

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 95/395 (24%), Positives = 174/395 (44%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
            +  G++ VS  LL DI R L +       +  E+   G    ++ G S F L + P  E
Sbjct: 61  TEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVNCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGDVFASAAAQVAIAAGRDDTLPVLTGVRVEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D SV ++L+     E  I   
Sbjct: 171 RYRFAVREFLWKPEDPETSAVALVPAKTLLDTAKALTSGD-SVTIALAGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RVS+++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVSLVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           +  L +   + D  +A+E ++       + I FN  +LL+ +  I S             
Sbjct: 289 AGVLTLEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDS-----PAAQLSFT 343

Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
           +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 344 TSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374


>gi|292557466|gb|ADE30467.1| DNA polymerase III, beta subunit [Streptococcus suis GZ1]
          Length = 378

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 168/350 (48%), Gaps = 14/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I   
Sbjct: 2   IQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSHGQISIEHFISIQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A    ++V  + D   +  F E E   ++ ++ G S   L+  
Sbjct: 62  DENAGLLISSPGSILLEAGFFINVVSSMPD--LVLDFNEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + VLK  +  T FA +T+E R  L G+ F + E +  L  
Sbjct: 119 EAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTE-NKNLKT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ ++       ++++P +++ E   + +    +V+V  S ++I    E
Sbjct: 178 VATDSHRMSQRKL-VLDTSGDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
            +S   RL++G +P+   +IP         +  NLR +++R  ++S + +   VKL +++
Sbjct: 237 HISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIAN 296

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +   V++P++G+  E ++ V  +   + I FN  YL+E +   +S++V
Sbjct: 297 NVVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTSEQV 346


>gi|212697387|ref|ZP_03305515.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675579|gb|EEB35186.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 375

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 84/333 (25%), Positives = 162/333 (48%), Gaps = 11/333 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++ D+   +  A + + RK  I +   +  +A +  L + +S  EI I   +  +
Sbjct: 6   MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVACN 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + ++A+++ +IVRKL D       K   + +++ I    S F + +F   E   
Sbjct: 66  VIEEGEMAINANIISNIVRKLPD----ELIKIEVVDSKIKIKCNGSKFNILAFDYYEKKD 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K     Y  E+ +  LK  + +T FA + +E +  L GI F +   D  L  VA DG+R
Sbjct: 122 LKVPNVDY-LEIQNDKLKRSISQTEFATSLDETKLALTGILFEL--MDGYLNFVALDGYR 178

Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +    +   S +I+PRK++ E  RI+   +   K+   +  I       +M  
Sbjct: 179 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           ++ID  + +Y N+I   +   L V+   L  +++R  ++++  R   +K+++  DK C+ 
Sbjct: 238 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDK-CLI 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
             N ++G   E + +      + I FN +YL+E
Sbjct: 297 ESNSEIGDLKEIIQIQKEGEDVKIAFNARYLIE 329


>gi|315605506|ref|ZP_07880543.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312773|gb|EFU60853.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 378

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 105/395 (26%), Positives = 181/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A+   L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKADGDELTLSSFDYEVSANSHIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
           VD  G + VS  LL DI + L     +S     EL G +VN+  G S+F L   P  E+P
Sbjct: 61  VDEAGEVLVSGRLLADISKSLPS-KPVSV----ELDGQKVNLVCGSSHFTLAVMPLDEYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +       + SS L   V +   A + ++    L G+   IN   + L  +ATD +
Sbjct: 116 LLPAQPTGIG-AIDSSTLSQAVSQVSIAASRDDTLPLLTGVRIEINGPSITL--LATDRY 172

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLN 231
           RLA+ E+D       +  I +V  + + ++ + ++S  + V+V LS        S I   
Sbjct: 173 RLAMRELDWEPTDTSIEEIALVKARILQDVAKSMTSG-AKVEVGLSGETQPGASSLIGFT 231

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 +  L+DG++P  + + P S   +  V+   L +AV R+S+++  R  +V+L+ +
Sbjct: 232 ASGRRTTSTLMDGDYPAVRRLFPESTPIQAVVDRHALLEAVKRMSLVAE-RKTSVRLAFT 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRL 350
             +L +     D  +A E++    +   +   FN ++L   ID +   +V+D D V F  
Sbjct: 291 EGQLVLEAGQGDNAQASEAIEASLHGDDISTAFNPQFL---IDGL---QVLDTDFVRFGF 344

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384
             S     I G+ K      + +V  F Y+LMP+R
Sbjct: 345 THSTKPAVITGQRK----VDEGEVTQFRYLLMPIR 375


>gi|229030374|ref|ZP_04186418.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
 gi|228730947|gb|EEL81885.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
          Length = 376

 Score = 99.4 bits (246), Expect = 9e-19,   Method: Compositional matrix adjust.
 Identities = 89/362 (24%), Positives = 162/362 (44%), Gaps = 38/362 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + +  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAVSAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  NEDDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQI----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  H+  +  KL 
Sbjct: 117 LPAYEFPNVPLIDGHTKIQVETERLIEVFKQTVFAVAKNESRPVLTGV--HLELDYNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+ E  I   +    S IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CVATDSHRLAIRETMISTDVKA--SCIVPSATISELLKLMTSNSEFVYIYLSESYIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-----------V 281
            + ++  RLI+G++PN  ++IP      + ++   + Q VDR ++++S           +
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNDFQTVINIDRKKILQGVDRSNLLASDWANNNVNLEII 292

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSD 339
              A+K+S ++ ++         GK  E+  V     E  ++I F+ +++L+ +  I  +
Sbjct: 293 NESAIKISSNASQI---------GKISETQQVDTIQGEKQLNISFDGRFMLDALKAIKEE 343

Query: 340 EV 341
            V
Sbjct: 344 TV 345


>gi|300172304|ref|YP_003771469.1| DNA polymerase III subunit beta [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886682|emb|CBL90650.1| DNA polymerase III, beta subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 377

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 163/340 (47%), Gaps = 19/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   ++ L    R I  + TIP+  ++ +      L +  S  +I I   I  S
Sbjct: 1   MQFSINRQAFIKALNDVSRAISSRTTIPILTNIKIVLTQEELILTGSNSDISIETRIDQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +   G IT+ A    +IV+ L  D   +S       G   +I+ G S+F +  
Sbjct: 61  DTGAQLIIKQPGGITLLATFFSNIVKNLPADDMTLSVD-----GVRASITSGASDFTING 115

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  
Sbjct: 116 QDVHNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK-- 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           AV TD HRL+   V +    A + + +I+P K+  E+  +L  +D  V++ L+ ++   +
Sbjct: 174 AVTTDSHRLSQRIVTLTGTDAHVKADVIMPAKSFNELQSLLEGQD-RVEIKLAANQAVFD 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           + + +   RL++G +P    +IP  +  +L +  + L  A++R S++S   R   V+L+L
Sbjct: 233 LGNTTFYSRLLEGNYPETDRLIPTESTTQLTIEASALLGAINRASLLSHESRNNVVQLTL 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYL 329
            +  + +   + ++G+  E +     E   ++I FN  Y+
Sbjct: 293 KNGVVTLIGTSQEVGRVQEELVTKSVEGEDLEISFNPDYV 332


>gi|302543963|ref|ZP_07296305.1| DNA polymerase III, beta subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461581|gb|EFL24674.1| DNA polymerase III, beta subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 376

 Score = 99.4 bits (246), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILLKAEEGALSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G  V +  G S F L + P  E
Sbjct: 61  VEDDGTVLVSGRLLADICRALPN-------RPVEISSDGVRVTVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V      +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +   + ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++   +   + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374


>gi|254393578|ref|ZP_05008711.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|294813741|ref|ZP_06772384.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|326442162|ref|ZP_08216896.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|197707198|gb|EDY53010.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|294326340|gb|EFG07983.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
          Length = 376

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 175/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           VD  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VDEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  E        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPEMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGKGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++ +     + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAHLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374


>gi|323341101|ref|ZP_08081349.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis
           ATCC 25644]
 gi|323091522|gb|EFZ34146.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis
           ATCC 25644]
          Length = 379

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 85/354 (24%), Positives = 164/354 (46%), Gaps = 20/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK +V R+  L+ L  A   I  K T+ +   V L  +   L I  S  +I I   +   
Sbjct: 1   MKFSVHRAAFLQYLNTAQTAISGKTTLEILTGVKLNLSADALTITGSNSDISIETILSIA 60

Query: 59  -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  GS+ + A    +IV++L +    +F        +  I  G S F +   
Sbjct: 61  DEDAQLTIEEPGSVVLPARFFGEIVKRLPED---TFTLTVNDRFQTTIVSGASEFTINGV 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E +     ++   +LK ++++T  A + +E R  L GI   INE +L   A
Sbjct: 118 ESEAYPHLPEIDSKDQLKIPGDLLKQIIDQTVIATSKQENRPMLTGIHLTINESEL--TA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +  +         I+VP  ++ ++ ++L      V++ +SE+++   ++
Sbjct: 176 VATDSHRLSQRKATLENNATGNYDILVPGDSLSKLSKMLGETQEDVELQISENQVLFILD 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
             S   RL++G++PN   +IP S    + ++  +L ++++R S++S       V+L +  
Sbjct: 236 HTSFYSRLLEGQYPNTAQLIPNSASTTVEIDAHSLLRSIERASLLSHEGHNNVVRLVIDP 295

Query: 293 DKLCMTV--DNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341
                T+  ++P++G   E ++  +N+   D   I FN  Y+ + +      EV
Sbjct: 296 AANTATIFGNSPEIGNVEEVLD--FNQIEGDELEISFNPDYMKDALHAFGQSEV 347


>gi|148658484|ref|YP_001278689.1| DNA polymerase III subunit beta [Roseiflexus sp. RS-1]
 gi|148570594|gb|ABQ92739.1| DNA polymerase III, beta subunit [Roseiflexus sp. RS-1]
          Length = 377

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 83/340 (24%), Positives = 162/340 (47%), Gaps = 16/340 (4%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L ++ HA   +  K+T+PV  ++LL ++DG L++ A+  EI IT  I A ++  G++TV 
Sbjct: 14  LAIVSHA---VAGKSTLPVLSNILLASDDGRLKLAATNLEIGITCWIGAKIEDEGAVTVP 70

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYS 129
           A LL D+V  L +  +I    +    T +N+        ++     EFP+    ++   +
Sbjct: 71  AKLLSDVVGSLPND-RIDLTLDVRTQT-LNLKCARFETNIKGTEAGEFPTIPTIDDRTPA 128

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
                ++L+  +E+  FA ATEE R  L G+   +   D +    A DG RLA   +++ 
Sbjct: 129 AIFPPALLRETIEQVAFAAATEETRPVLQGVQLRLR--DNRAIFAAADGFRLAQRIIELP 186

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSMSVRLIDGEFP 247
             I +   +I+P +A+ E+ RI+   +S V++ ++    ++  +  ++ +  RLI+G FP
Sbjct: 187 EPIVQQQELIIPARALTELARIVDDDESPVEMMITPGGGQVLFHTSTVDLVSRLIEGRFP 246

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLSSDKLCMTVDN 301
           +   VIP        ++   L +AV   S  +      V+L       +   ++ ++ + 
Sbjct: 247 DVDRVIPQQYQTRAVLDRQELTKAVKLASFFAVASSNIVRLHMEPGGEMGPGRITISANA 306

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++G     ++         I  N K+L + I  I + ++
Sbjct: 307 VEVGDNKGQIDATIQGDGGQIALNVKFLSDAIAAIPTPQI 346


>gi|302552696|ref|ZP_07305038.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470314|gb|EFL33407.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes
           DSM 40736]
          Length = 376

 Score = 99.0 bits (245), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           VD  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VDEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPNATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D  V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-QVTLALSGSGSGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++   +   + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374


>gi|302669376|ref|YP_003829336.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus
           B316]
 gi|302393849|gb|ADL32754.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus
           B316]
          Length = 369

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/366 (23%), Positives = 178/366 (48%), Gaps = 16/366 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +S+++  L    + +  K T+ +   +L+ A +G+++  A+  E+ I   +  +
Sbjct: 1   MKFVCSKSNLVSGLQIVSKAVPSKTTMSILECILVDATEGIIKFIANDMELGIQTVVEGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  DIVRKL D        E++   +V IS   + F L      +F  
Sbjct: 61  IVERGYIALDAKIFVDIVRKLPDN---DVTIESDSTNKVTISCERAKFNLIGRKGDDFTY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E +    ++   L+N++++T F++A  +    + G  F ++ E+LKL  V+ DGHR
Sbjct: 118 LPSIEKIDGVTVSQYTLRNVIQQTIFSIAENDANKMMAGELFEVDGENLKL--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +         +IVP K +GEI +IL  S +  V +  ++  +    +  ++  
Sbjct: 176 ISIRKVKLNGSYP-YKKVIVPGKTLGEISKILGDSIEKMVNIYFTDKHVLFEFDKTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298
           RLI+GE+ +   ++    + ++ +N       +DR +++      + V +S++  K+ + 
Sbjct: 235 RLIEGEYFSIDQMLSSDYETKISINRKEFLDCIDRATLLVKEGDKKPVIISVTDGKIELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357
           + N  +G   E + +      + I FN K+L++ +       V+DDE+V   + +  +  
Sbjct: 295 I-NSAIGSMDEEIEIDKQGKDLMIGFNPKFLIDAL------RVIDDELVDIYMVNPKAPC 347

Query: 358 FIRGKD 363
           FIR K+
Sbjct: 348 FIRDKE 353


>gi|308234058|ref|ZP_07664795.1| DNA polymerase III, beta subunit [Atopobium vaginae DSM 15829]
 gi|328943455|ref|ZP_08240920.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM
           15829]
 gi|327491424|gb|EGF23198.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM
           15829]
          Length = 369

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 86/363 (23%), Positives = 172/363 (47%), Gaps = 14/363 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V + +  + +    R +  + T+PV   + +QA    L ++    ++ I   + A+
Sbjct: 1   MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V    L  +V+ L D A I+        T+  ++   S + L +   ++FP 
Sbjct: 61  VEEEGQTVVPGLFLSKLVKNLPD-APITM---ETTPTQAILTCLKSTYELSTLDAADFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S EL S +L ++VER  + +  E+I   + G    + +E+ KL   ATD HR
Sbjct: 117 FPDITPSQSIELPSDLLNDMVERV-YRVTKEDISNPILGGITLVAQEN-KLTMYATDSHR 174

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L + + +   A I    + I+P     E+L  L +    +++ L+++++  + E+ +   
Sbjct: 175 LVIIDTNTETASIDSEFTAIIPAVCFHELLN-LPTITPRLQIGLTDNQVIFSFENTTYVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
             I+G FPNY+N+ P + + +L VN   L QA+ RV+++++ +   V   +      +T+
Sbjct: 234 LKIEGMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITL 293

Query: 300 --DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             D+ + G + E  +      P+    NY+++LE   + +      DE+ F +  S   +
Sbjct: 294 KADSSEFGASKEEFSATIEGNPISFSMNYQFILECCRSTTH----ADEMTFEIVDSFQPI 349

Query: 358 FIR 360
            I+
Sbjct: 350 VIK 352


>gi|329768085|ref|ZP_08259594.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328838240|gb|EGF87852.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 379

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 90/360 (25%), Positives = 178/360 (49%), Gaps = 30/360 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV---------SCHVLLQANDGLLEIKASGPEI 51
           MK T+ +S+ L+ L H  R+I   +   +            ++L+A+D L+ ++ S    
Sbjct: 1   MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDQLILKASDSLVSVEYSINSY 60

Query: 52  EITGAIPASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENEL----GTEVNISHGDS 106
           E    I  +++  G + + +    +I+RK   D  +I   + N L     +E N+   D+
Sbjct: 61  EDDKEI-ITIEEEGQVVLPSRNFIEIIRKAPTDLIEIETIENNILVKSGKSEFNVKGYDA 119

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           N Y       EFP   +E    S +L +++  ++++ T F  A  + R  L G+ F ++ 
Sbjct: 120 NDY------PEFPVISKEN---SLKLEANIFNDIIKETVFCTAPNDQRPILEGVNFSLSN 170

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225
           +   L A ATD +RL+  +V +  + + K  ++I+PRKA+    R++ +    V++    
Sbjct: 171 K--ILTATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYEN 228

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQ 284
           +RI L  +++  +V LI G +PN   +IP   +     N      AVDRV++MS   +  
Sbjct: 229 NRIVLYYQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFNAVDRVALMSREDKDD 288

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +KL ++ + L ++  + D+G A+E + V     +   +I  + KYL + +  ++++E++
Sbjct: 289 IIKLVVTDNLLEVSSQSKDLGSAVEELKVSSTLEDDKFEISVSGKYLKDAVSAVAAEEII 348


>gi|298294438|ref|YP_003696377.1| DNA polymerase III subunit beta [Starkeya novella DSM 506]
 gi|296930949|gb|ADH91758.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506]
          Length = 406

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 76/300 (25%), Positives = 132/300 (44%), Gaps = 23/300 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ER+ +L  L     + ++KN IP+  HV L+    LL + A+  +      IPA 
Sbjct: 1   MKLIAERTHLLAALKTVGHLAQKKNPIPLLRHVRLRTVGRLLFVAATDQDAYAEAEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
           V+  GS T+ A +L  +V    DG+Q+       L T   I  G S +     P  +FP 
Sbjct: 61  VERQGSTTIDADVLQRMVNNFADGSQVYIDAGEALAT---IKAGRSRYQPPVLPADDFPA 117

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             + KE++      +   V + LV     A   +  +  L G++ H +++D  L A ATD
Sbjct: 118 MFAPKEKDAARFTLMPEEVKRLLVVPRPAAPKGQADKQQLEGVYLHTSDDDRTLWAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSII--------------VPRKAVGEILRILSSK---DSSVK 220
           G     A++      AK+P ++              VP  AVG ++++  +    ++   
Sbjct: 178 GLTFIAADIPAPEGAAKLPKLVEPGEHGAGRPRGLMVPMDAVGHLIKLGENGLEIEADTN 237

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           V  + + +  +   +S + RLID  FP Y+  +P      + V       A+ R++ M+ 
Sbjct: 238 VLAARAGLPSSAVKVSYATRLIDNRFPPYERFLPPLEGVSILVEAGAFADAIKRLADMAG 297


>gi|15826867|ref|NP_301130.1| DNA polymerase III subunit beta [Mycobacterium leprae TN]
 gi|221229345|ref|YP_002502761.1| DNA polymerase III subunit beta [Mycobacterium leprae Br4923]
 gi|1169395|sp|P46387|DPO3B_MYCLE RecName: Full=DNA polymerase III subunit beta
 gi|886326|gb|AAB53142.1| DNA polymerase III beta subunit [Mycobacterium leprae]
 gi|1262353|emb|CAA94709.1| DnaN [Mycobacterium leprae]
 gi|13092414|emb|CAC29510.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae]
 gi|219932452|emb|CAR70095.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae
           Br4923]
          Length = 399

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 173/401 (43%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R      +    + +  + T+PV   VLL  +D  L I     E+     + A 
Sbjct: 13  LKFCLARESFASAVSWVAKYLPTRPTVPVLSGVLLTGSDSGLTISGFDYEVSAEVQVAAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DI R L +   + F+ +   G  V ++ G + F L +    ++P+
Sbjct: 73  IASSGSVLVSGRLLSDITRALPN-KPVHFYVD---GNRVALTCGSARFSLPTMAVEDYPT 128

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  +E   +  L S V    + +   A   +     L GI   I+ + + L   ATD 
Sbjct: 129 LPTLPDE---TGTLPSDVFAEAIGQVAIAAGRDYTLPMLTGIRIEISGDTVVLA--ATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHL 230
            RLAV E+      +    S++VP K + E+ +   +  S V +SL        +    +
Sbjct: 184 FRLAVRELKWSVLSSDFEASVLVPAKTLVEVAKA-GTDGSGVCLSLGAGVGVGKDGLFGI 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           +      + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++  
Sbjct: 243 SGGGKRSTTRLLDAEFPKFRQLLPAEHTAVATIDVAELTEAIKLVALVAD-RGAQVRMEF 301

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F  
Sbjct: 302 GDGILRLSAGADDVGRAEEDLAVAFTGEPLTIAFNPNYLTDGLASVHS-----ERVSFGF 356

Query: 351 DSSNSSVFIRGKDKDSKN-NKDNKVNAF-----YVLMPMRI 385
            + +    +R    D  +   D    A      Y+LMP+R+
Sbjct: 357 TTPSKPALLRPTSNDDVHPTHDGPFPALPTDYVYLLMPVRL 397


>gi|88658239|ref|YP_507796.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599696|gb|ABD45165.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 182

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 63/180 (35%), Positives = 98/180 (54%), Gaps = 6/180 (3%)

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           +SA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP  +  E   
Sbjct: 1   MSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENNELQN 58

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
            F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHRL++ ++  
Sbjct: 59  KFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLTKLSQ 116

Query: 189 VAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
              +     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   +  ++ID  F
Sbjct: 117 SQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTF 176


>gi|228958921|ref|ZP_04120624.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800760|gb|EEM47674.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 376

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 79/288 (27%), Positives = 137/288 (47%), Gaps = 16/288 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A++   G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QLITIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L  +  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTEV--HIELSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLLSSDVKA--NCIVPSATINELLKLMNSNSEFVYIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLAS 280


>gi|78185893|ref|YP_373936.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
 gi|78165795|gb|ABB22893.1| DNA polymerase III, beta subunit [Chlorobium luteolum DSM 273]
          Length = 378

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 91/351 (25%), Positives = 171/351 (48%), Gaps = 23/351 (6%)

Query: 40  GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---G 96
           G L + AS  E+ IT          G+I + A  L D +R + D + +   +  E+   G
Sbjct: 44  GELTLFASDGEVSITAKSGVESSDSGNIGIRARTLQDFLRSMYDTSVMFSIERQEISDHG 103

Query: 97  TEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156
           T V+IS     + +    +S+ P  ++++Y  S E+ +S + +L+++T FA + + +R  
Sbjct: 104 T-VSISTDKGRYRIPCLFQSK-PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPA 161

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           + G+ F +  E   + AVATDGHRL          +++   ++VP + +  IL+ L+  D
Sbjct: 162 MMGVLFEL--EGSIITAVATDGHRLVRCRKASSVDLSEKNKVVVPARVLS-ILQKLAQTD 218

Query: 217 SSVKVSLSESR-IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
           S      SE + +     S+ +   LI   +PNY+ VIP  +D+ L +N + +  +V RV
Sbjct: 219 SVTMQFDSERKFVRFICGSIVLDAALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRV 278

Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIID 334
              SS  I  VK+ L    + +  +N + G+ A E +   ++   M I FN +++   + 
Sbjct: 279 GRFSS--IGDVKVVLEGQMMKIMAENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALA 336

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++      ++E+   L S  ++V  R   ++  +      N   ++MP+RI
Sbjct: 337 HLD-----ENEIRIELKSPTTAVIFRPHGEEEND------NLIILVMPVRI 376


>gi|84497193|ref|ZP_00996015.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649]
 gi|84382081|gb|EAP97963.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649]
          Length = 377

 Score = 98.6 bits (244), Expect = 1e-18,   Method: Compositional matrix adjust.
 Identities = 94/397 (23%), Positives = 175/397 (44%), Gaps = 36/397 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +  +PV   +L++AND G + + A   E+     +PA
Sbjct: 1   MKFRVEREVLAEAVTWVARGLPARPPVPVLAGILIEANDEGTVTLSAFDYEVSARLTVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116
            V   G++ V   LL DI R L +       K  ++   G++V +  G S F L   P  
Sbjct: 61  EVSESGTVLVLGRLLADISRNLPN-------KPVDVEVQGSKVQVVCGSSRFSLLQMPSD 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+        S  +   +    V +   A    +    L G+   I  E  K+  +AT
Sbjct: 114 DYPTLPSSPE-PSGSIDGQLFTQAVNQVSIAADRGDTLPILTGVRVEI--EGDKMTLLAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSII-VPRKAVGEILRILSSKDSSVKVSLSESR-----IHL 230
           D +RLA+ E+      +    I+ VP + + +  R L +   S+ V+L  +      +  
Sbjct: 171 DRYRLAMRELTWNPTDSAASHIVLVPARTLADTARSLGAS-GSIDVALGSAAGGDGLVGF 229

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
              S   + RL+DGE+P   ++ P +++ E  VN   L +AV RV++++  R   V+L  
Sbjct: 230 EAGSRRTTTRLLDGEYPKVSSIFPTTSETESVVNTAELVEAVKRVALVAE-RNTPVRLRF 288

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  ++ +     +  +A E++        +++ FN  +LL+ +  + ++         RL
Sbjct: 289 TEGQVAIEAGTGEDAQASEAVEATLTGPDVEVAFNPGFLLDGLGAVGTE-------FSRL 341

Query: 351 ---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                S  +V     + D + +   +    YV+MP+R
Sbjct: 342 SFTQPSRPAVLSGQAEADGEADTSYR----YVIMPVR 374


>gi|284047390|ref|YP_003397729.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283951611|gb|ADB46414.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 375

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 81/349 (23%), Positives = 165/349 (47%), Gaps = 14/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV--SCHVLLQANDGLLEIKASGPEIEITGAIP 58
           M+ + E  ++ + +    R I   N  P+    H +LQ N   L++ A      +   + 
Sbjct: 1   MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNT--LQLIAMDNTYMMNKKLD 58

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK---ENELGTEVNISHGDSNFYLQSFPE 115
            + +  G + + A  + D++ +      ++  +   E E+  +   + G  +  L   PE
Sbjct: 59  VNGEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMD-PE 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P+    +   + +L   ++  L+  T +A +T+  R    G++   + +   L AV 
Sbjct: 118 -EYPAMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQ--HLTAVG 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES 234
           T+ HRLA+ EV++        S+++P + + EI   L+ +    V ++L E +I   + S
Sbjct: 175 TNTHRLAIKEVELPEGDDSEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGS 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           L++   LI+G+FP+Y+  IP S       N  ++ +A+ RVS+ S      V+L++ +D 
Sbjct: 235 LTIISSLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADG 294

Query: 295 LCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + ++    DMG+  E  +     +  P++I FN +Y+ +   N  +D V
Sbjct: 295 ITLSSAVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGTDRV 343


>gi|256370586|ref|YP_003108411.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri SMDSEM]
 gi|256009378|gb|ACU52738.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 371

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 93/369 (25%), Positives = 183/369 (49%), Gaps = 13/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK     +++L  L     +I   N +P+  + L +  +  +L I  S  EI +T ++  
Sbjct: 1   MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLNI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  +   +L +I++K+ +   ++F KE E   ++   +G+  + L  F   E+P
Sbjct: 61  NSINFGSAVIPHKILLEILKKIPEQP-LTFCKEKENKLKILSQNGE--YDLSIFSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                     F ++  +L N++  T FA+  +EIR  LNG+FF I E ++    V+T+ +
Sbjct: 118 KYSLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDI-ENNIS-NFVSTNSN 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            L    +  ++   K   +I+P+K +  +   L+  +++V +S ++       +   +  
Sbjct: 176 FLVKYSIKDLS-FNKEIRLIIPKKPLNILKYNLNDTNNNVYISYNDLNTSFFFKKKKIIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM-T 298
            LI+G +PNY++++    +K L +N      A+ RV++ S+     + L+ S  +  + +
Sbjct: 235 SLINGNYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            D     KA E +   Y+  P++I FN KYL+EI+ NI+      +++ F + ++NSS  
Sbjct: 295 FDINYNKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINC-----EDIKFEMLNNNSSCR 349

Query: 359 IRGKDKDSK 367
           I    K+SK
Sbjct: 350 ITPLMKNSK 358


>gi|293191013|ref|ZP_06609057.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309]
 gi|292820700|gb|EFF79666.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309]
          Length = 378

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 102/395 (25%), Positives = 179/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A    L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
            D  G + VS  LL DI + L     +S     EL G +VN+  G S+F L   P  E+P
Sbjct: 61  ADEAGEVLVSGRLLADISKSLPS-KPVSV----ELDGQKVNLVCGSSHFTLAVMPLDEYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +       + SS L   V +   A + ++    L G+   IN   + L  +ATD +
Sbjct: 116 LLPAQPTGVG-AIDSSTLSQAVTQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRY 172

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLN 231
           RLA+ E+D       +  + +V  + + ++ + ++S  + V+V LS        S I   
Sbjct: 173 RLAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFT 231

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +    +  L+DG++P  + + P +   +  V+   L +AV R+S+++  R  +V+L+ +
Sbjct: 232 AQGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVAE-RKTSVRLAFT 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD-DEVVFRL 350
             +L +     D  +A E++    N   +   FN ++L   ID +   +V+D D V F  
Sbjct: 291 EGQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFL---IDGL---QVLDTDYVRFGF 344

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384
                   I G+    K   + +V  F Y+LMP+R
Sbjct: 345 THPTKPAVITGQ----KKADEGEVTQFRYLLMPIR 375


>gi|118615921|ref|YP_904253.1| DNA polymerase III subunit beta [Mycobacterium ulcerans Agy99]
 gi|118568031|gb|ABL02782.1| DNA polymerase III (beta chain) DnaN [Mycobacterium ulcerans Agy99]
          Length = 402

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 90/384 (23%), Positives = 173/384 (45%), Gaps = 35/384 (9%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +  +  +PV   VLL  +D  L I     E+     +PA +   G++ VS  LL DI R 
Sbjct: 33  LPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEIASPGTVLVSGRLLSDITRA 92

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138
           L     + F+ +   G  V ++ G++ F L +    ++P+  T  E+   +  L + +  
Sbjct: 93  LPK-KPVDFYVD---GNRVALTCGNARFSLPTMAVEDYPTLPTLPED---TGTLPAELFS 145

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197
             + +       ++    L GI   I+ E  K+   ATD  RLAV E+   A    +  +
Sbjct: 146 EAIGQVAITAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRLAVRELTWNALSPDIEAA 203

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250
           ++VP K +GE  +  ++  S V++SL        +  + ++ +    + RL+D EFP ++
Sbjct: 204 VLVPAKTLGEAAKA-NTDGSEVRLSLGAGMGVGKDGLLGISGDGKRSTTRLLDAEFPKFR 262

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
            ++P  +      +   L +A+  V++++  R   V++  +   L ++    D+G+A E 
Sbjct: 263 QLLPAEHTAVASADVAELTEAIKLVALVAD-RGAQVRMEFADGMLRLSAGADDVGRAEED 321

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367
           + V +   P+ I FN  YL++ + ++ S     + V F   +      +R    +D+   
Sbjct: 322 IAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGFTTPGKPALLRPASAEDRIVS 376

Query: 368 NNKDNKVNA------FYVLMPMRI 385
              D    A       Y+LMP+R+
Sbjct: 377 GPGDQGPFAAVPTDYVYLLMPVRL 400


>gi|320527129|ref|ZP_08028316.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204]
 gi|320132457|gb|EFW25000.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204]
          Length = 373

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 85/349 (24%), Positives = 174/349 (49%), Gaps = 16/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVL-LQANDGLLEIKASGPEIEITGAIPA 59
           M +T+ +++    L    R I   N+   S   L +   D  + +  S  +I I   I A
Sbjct: 1   MNLTISKTEFYNTLQLVSRAIS-PNSPQTSLRGLKIDVKDNSMVVTGSDADISIQHTITA 59

Query: 60  S----VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
           +    +++   GSI + +  L +IVRK+ D  +I    E   G+    S   + F +   
Sbjct: 60  NDKNKLNILEEGSILIESKYLLEIVRKI-DSEEIHV--EIIDGSLTKFSGNSAVFKINGM 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P+    +   S  ++SSV+ +++E+T FA + +E +  L G+ FH++  D  LC 
Sbjct: 117 NPHDYPTIDFSKPANSVVISSSVMSDIIEQTTFATSIKETKPVLTGVNFHLS--DNTLCC 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNI 232
            ATD +RLA   +   +  +   ++ +P K++ E+   +   DS  +++ L++ +     
Sbjct: 175 TATDSYRLAKKTIPFTS--SDNFNVTIPSKSLNEVKSTMIGDDSGEIQIYLNDKKAQFVN 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           E + +  RL+DG +P    +IP      L +N ++L  A+DR + + +  +   +L  S+
Sbjct: 233 EDMILQTRLLDGGYPETDRLIPKEFKYTLEINRSDLIHAIDRTTFIKTDNMTINRLQCST 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           D++ +T  + ++G++ E++   +   P+DI F+  Y++E   +I  D++
Sbjct: 293 DEVVLTNKSQEIGESHETLVGTFTGEPLDISFSGNYVMEAARSIRGDKL 341


>gi|298372804|ref|ZP_06982794.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275708|gb|EFI17259.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 377

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 176/353 (49%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +++ R+++   L    ++I  K  IP++ + L +  + +L I A+  E  ++ AI  +
Sbjct: 1   MNLSISRNELYNKLAIVQKVINSKTPIPIAENFLFKIENNVLTIVATDLETTLSTAI--N 58

Query: 61  VDVC-GSITVS-AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF----- 113
           ++ C GSI  +    + +I+++L +  QI     +E   ++++   +S  Y   F     
Sbjct: 59  LENCPGSIIFAMPPKIMEILKELPE--QILSISIDEETFKIDL-QNESGSYKSDFLGIGV 115

Query: 114 --PESEFPSTKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                +FP  KE +  Y S ++ S +L N + RT FA A E+ R  + G+ F + + ++ 
Sbjct: 116 GQNGEDFPRPKELDTEYKSLKITSELLLNGISRTVFATAEEDSRPTMTGVLFDMFDNNIT 175

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATD H+L    +  +  I    S I+P+K    +  IL   D  +++S  +  I  
Sbjct: 176 F--VATDAHKLVKYNMSNI-NIGFENSFILPKKPALTLKNILVRTDELIEISFDDKNISF 232

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            +    M  R I+G++PNY  VI  +  K + V+  +L  A+ RV + SS     +  ++
Sbjct: 233 RMPEYEMICRRIEGKYPNYNAVIQKNPFKAI-VDRQSLLSAIKRVKVFSSQGTGLIIFNI 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           S +K+ ++  + D   + + + V  Y++ PM+I F    L EI+ N+  +++V
Sbjct: 292 SENKIEVSTQDIDFSTSAKEIIVCQYSDQPMEIGFKAALLEEILSNMQDNQIV 344


>gi|308235534|ref|ZP_07666271.1| DNA polymerase III subunit beta [Gardnerella vaginalis ATCC 14018]
 gi|311114015|ref|YP_003985236.1| DNA-directed DNA polymerase III subunit beta [Gardnerella vaginalis
           ATCC 14019]
 gi|310945509|gb|ADP38213.1| DNA-directed DNA polymerase III beta subunit [Gardnerella vaginalis
           ATCC 14019]
          Length = 372

 Score = 98.6 bits (244), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 100/391 (25%), Positives = 186/391 (47%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + L+A DG+L++ A   ++     + A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKLEAKDGILQLSAFNYQLSSRHHVEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  GS+ V   L+ DI + L   ++ ++   NE  T + IS G S F LQ  PE E+P 
Sbjct: 61  IDEQGSVLVLGKLMADITKSLP--SEKTYLSSNE--TTLTISSGKSTFTLQLMPEGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +         A + ++ +V+ +  A++ EE R  L GI  H   ED  +   ATD +R
Sbjct: 117 LPQIPEKLGQVDAPTFVQAVVQAS-VAVSREEDRPVLTGIHAHF--EDDSVTFTATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHL----NIE 233
           LA +      +   + +  + +   G ILR +S    +  +V V+L++    +    N  
Sbjct: 174 LARSTFKWTPEHFDINTSTLIK---GSILRDISRSIDEHQNVIVNLNDKEPSILGFENSG 230

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            +S S +LIDGEFP+   +          +N T L  A+ RV++++  +   + +S S D
Sbjct: 231 RVSTS-QLIDGEFPSVDRLFVDEYPIHAIINRTMLINAIKRVALVAE-KDAPIYMSFSGD 288

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L ++  N    +A E +++  +   + + FN  YL+E +  IS     +  V  ++ S+
Sbjct: 289 ELTLSAGNDSESQAKELIDIDMDGQDIIVAFNPNYLIEGLSAIS-----EPFVHAKITSA 343

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V   G+    + + D  +N  Y+++PM 
Sbjct: 344 VKPVEFNGQ---QEADGDESMNYRYLVVPMH 371


>gi|331092113|ref|ZP_08340944.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402314|gb|EGG81885.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 369

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 92/386 (23%), Positives = 187/386 (48%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A +  +IVRKL D  ++    ++ L T +       N   +S  E S  P
Sbjct: 61  IIEKGLIAIDAKIFSEIVRKLPDN-EVVIETDSNLQTLITCEKAKFNISGKSGEEFSYLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++EE V   EL+   LK ++ +T F ++  +    + G  F INE  LK+  VA DGH
Sbjct: 120 YIEKEEPV---ELSQFTLKEIIRQTIFTISDHDSNKLMTGELFEINENILKV--VALDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           R+++ +V+++   A    +IVP K + E+ +ILS + +S   +  + + I    +   + 
Sbjct: 175 RISIRKVELMNNYAS-KKVIVPGKTLIEVSKILSGEVESKANIYFTPNHIVFEFDQTVVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+     ++    + ++RVN   L   +DR  ++      + + +++  + + +
Sbjct: 234 SRLIEGEYFKIDQMLSSDYETKVRVNKKELLSCIDRAMLLVKEGDKKPIIINIGDEAMEL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            + +  +G   E + +      + I FN K+L++ +  I      D+E+   L ++ +  
Sbjct: 294 KIQS-QLGSMNEDILITKEGKDLLIGFNPKFLMDALRVIE-----DEEIQIYLTNAKAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FIR          D K +  Y+++P+
Sbjct: 348 FIR----------DEKESYIYLILPV 363


>gi|297158792|gb|ADI08504.1| DNA polymerase III subunit beta [Streptomyces bingchenggensis
           BCW-1]
          Length = 376

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A D  L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEDSTLSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G  V +  G S F L + P  E
Sbjct: 61  VEDDGTVLVSGRLLADICRALPN-------RPVEISTDGVRVTVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P T  +    +  +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YP-TLPQMPTATGTVPGDVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +   + ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+L+  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLTFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPAMDAEADEAYK----YLIMPVRL 374


>gi|283797184|ref|ZP_06346337.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1]
 gi|291075142|gb|EFE12506.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1]
 gi|295090279|emb|CBK76386.1| DNA polymerase III, beta subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 372

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 101/401 (25%), Positives = 188/401 (46%), Gaps = 54/401 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++ E+  +L  +    + +  K T+P+   +L+ A    +++  +  E+ I   +   
Sbjct: 1   MKLSFEKDSLLNGINIVLKAVPSKTTMPILECILIDATGTEIKLTGNDMELGIETQVEGL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G + + A L  DI+RKL  G +     E++      IS   S F +Q     EF  
Sbjct: 61  ILERGKVALDAKLFSDIIRKLS-GEESPIIIESDEKNNTTISCDKSVFKIQGKDGDEFSY 119

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P  + + Y+    L+   LK ++ +T F+++  +    + G  F +N+ +LK+  V+ D
Sbjct: 120 IPHIERDRYI---TLSQFTLKEVIRQTLFSISPNDSNKMMTGELFEVNDNELKV--VSLD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
           GHR+++ ++++      +  +IVP K +GEI +IL+   +S V++  S + I    +S  
Sbjct: 175 GHRMSIRKIELKDHYNDI-KVIVPGKTLGEISKILNGDNESEVQIFFSSNHIMFEFDSTL 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLI+GE+     ++  S+D E +VN       V+R + + S+  +A  L   +DK  
Sbjct: 234 VVSRLIEGEYFRISQML--SSDYETKVN-------VNRRAFLDSIE-RASILIRENDKKP 283

Query: 297 MTVDNPDMGKAIESMNVYYNECPMD-----------ICFNYKYL---LEIIDNISSDEVV 342
           + +   D G  ++ MN  Y     +           I FN K+L   L IID        
Sbjct: 284 IIITITDEGMQLK-MNSAYGTMNAEVGITKFGKDIMIGFNPKFLIDALRIID-------- 334

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           D+EV   + +  S  FI          KD++ N  Y+++P+
Sbjct: 335 DEEVTLYMMNPKSPCFI----------KDDEENYIYLILPV 365


>gi|167748044|ref|ZP_02420171.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662]
 gi|167652524|gb|EDR96653.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662]
          Length = 367

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 184/386 (47%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD++  +    + +  K T+P+   +L++A+ G + + A+  E+ I   I  +
Sbjct: 1   MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L ++IVRKL D        E +   +  I+   + F++     SEFP 
Sbjct: 61  ILEQGKIALDAKLFFEIVRKLPDN---DVTIETDSDYKATITCEKACFHIVGQEGSEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  L+   LK ++ +T F+++  E    + G  F +  ED KL  V+ DGHR
Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFEV--EDKKLNVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + EI +I+S   +  V + ++   I    +   +  
Sbjct: 176 ISIRNIELKESYDSF-KVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298
           RL++GE+     ++    + ++ +N       +DR S++      + + ++++ + L ++
Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357
           + +   G   E++ +      + I FN K+L++++       V+DDE +   L +  +  
Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVL------RVIDDEEINIYLVNPKAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FI          KD+  +  Y+++P+
Sbjct: 348 FI----------KDDSESYIYLILPV 363


>gi|160893410|ref|ZP_02074195.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50]
 gi|156864805|gb|EDO58236.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50]
          Length = 363

 Score = 98.2 bits (243), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 87/381 (22%), Positives = 181/381 (47%), Gaps = 24/381 (6%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66
           +  +++ + +  + +  K T P+   + ++A +G +++ A+  EI I   +  +V   G 
Sbjct: 2   KGKLMQGISNVSKAVSTKTTHPILSCIFIEAENGNIKLTANDMEIGIESYVEGTVIEEGK 61

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           + + A LL DIVRKL D ++I      +  T +      S F +      +F S    E 
Sbjct: 62  VAIEAKLLSDIVRKLPD-SEIHMETNEDFKTTIKCEK--SLFTIAGKSGEDFSSLPVVEK 118

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                ++   L+ ++ +T F+++  E    + G  F ++   L++  VA DGHR+A+  V
Sbjct: 119 SKFITISQFTLREIINQTIFSISDSEYNNVMTGELFEVSNNRLRV--VAIDGHRIAIRNV 176

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           ++  + ++   +IVP KA+  I +I+S   D  V +  +++ I    +   +  RL++GE
Sbjct: 177 ELKNE-SEDVKVIVPGKALSYISKIVSGGVDDDVNIYFADNNILFEFDRTKVVSRLVEGE 235

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDM 304
           F    N++      +  +N       +DR S++      + +KL++  + L + +D+  +
Sbjct: 236 FFRIDNMLNVDYQIKFTINKREFLDCLDRSSLLIKESDKKPIKLTIEDNMLYLKIDSL-I 294

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
           G   E + ++     + I FN K+L++ I  I      DD++   ++++ S   I     
Sbjct: 295 GSMNEEIEIHKEGNNIIIGFNPKFLMDAIRAIE-----DDDITIYMNNTKSPCVI----- 344

Query: 365 DSKNNKDNKVNAFYVLMPMRI 385
                KD + +  Y+++PM I
Sbjct: 345 -----KDEEESYIYLILPMGI 360


>gi|156028374|gb|ABU42566.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 197

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 53/204 (25%), Positives = 120/204 (58%), Gaps = 7/204 (3%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+   + + +  L  VATDG+RL + ++ +   I    S+I+PRK + E+ R+L+
Sbjct: 1   RYYLNGML--LKKNNTFLYTVATDGYRLGITKIFLQKDIIIPFSVIIPRKGILELYRLLN 58

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            +   + + + ++ I ++I  L  + +LI+G++P+Y+++I     + + +NC  L++++ 
Sbjct: 59  IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESIIIIIKKEPIILNCQLLKKSLL 118

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I+S  +   +++ +  ++L +  DN +   A +  N+ Y+   + +  N  Y+++++
Sbjct: 119 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 178

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + I+S     + +   L+ SN+S+
Sbjct: 179 NTITS-----ENIFLYLNESNNSI 197


>gi|119394194|gb|ABL74459.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 195

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+   + +E   L AVATDG+R+ + +  I   +    S+I+PRK + E+ ++L+
Sbjct: 1   RYYLNGML--LKKEKTLLYAVATDGYRMGITKTSIQEDVVPF-SVIIPRKGIVELYKLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            K   ++  + ++ I + IE L  +++LI+G +P+Y  ++    +  + +N   L+Q++ 
Sbjct: 58  IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTGILLKHKNCPIILNSQQLKQSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I++S     +++ + ++K  +  DN +  +A +S  + Y    ++I  N  Y+L+I+
Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEE-ERAEDSFKINYFNNEVEISINVYYILDIL 176

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + ISS       +   L+ SN+S+
Sbjct: 177 NVISS-----KNIFLFLNESNNSI 195


>gi|307564548|ref|ZP_07627088.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A]
 gi|307346706|gb|EFN92003.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A]
          Length = 374

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 91/368 (24%), Positives = 168/368 (45%), Gaps = 19/368 (5%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDI 77
           ++I  KN I +    L +  +  L I AS  E  I   I   S D   S  V+   + D 
Sbjct: 19  KVIANKNAIAILDCFLFEIKNNQLTITASDSENTIHCIIELDSADGEASFAVNNQTIIDA 78

Query: 78  VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSV 136
           V++L +         NE    +   +G  NF +  F   E+P  +       +  + S++
Sbjct: 79  VKELPEQPLSLDVNMNEQKIYITYQNGSYNFPI--FSAEEYPRVQTVSSDATTIVIDSNI 136

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           L + + R+ FA A +E+R  +NG++F +  + L +  VATDG +L   ++  +    K  
Sbjct: 137 LVDAITRSLFATAQDELRPVMNGLYFDLLSDSLSI--VATDGQKLVRNKIFTIKS-DKES 193

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           + I+P+K    +  +LS     V +   +    ++    ++S RLI+G FPNY +VIP +
Sbjct: 194 AFILPKKPANLLKNVLSKDGGDVIIRYDQRSAEISYAEGNLSCRLIEGRFPNYNSVIPVA 253

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYY 315
           N  ++ ++  +L  A+ RV   +S     ++  +    L +  ++ D    A ES+   Y
Sbjct: 254 NPNQIVIDRRSLIGAIRRVLPFASEASPLIRFRIEQGVLTLNAEDIDFSTSAKESVVCNY 313

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
               M I F    +L+I++N+  D+V     +   D S + + +  K  ++       V+
Sbjct: 314 AGNAMSIGFKGTSMLDILNNLDGDDV----TIELADPSRAGIVLPNKQLEN-------VD 362

Query: 376 AFYVLMPM 383
              ++MPM
Sbjct: 363 VLMLIMPM 370


>gi|29830860|ref|NP_825494.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680]
 gi|29607973|dbj|BAC72029.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis
           MA-4680]
          Length = 376

 Score = 97.8 bits (242), Expect = 2e-18,   Method: Compositional matrix adjust.
 Identities = 98/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLRAEDGALSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPNATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +     ++ +VP K + +  + L+S D SV ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-SVTLALSGSGSGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++   +   + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPAVDAEADEAYK----YLIMPVRL 374


>gi|300213941|gb|ADJ78357.1| DNA polymerase III, beta chain [Lactobacillus salivarius CECT 5713]
          Length = 352

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 69/282 (24%), Positives = 147/282 (52%), Gaps = 9/282 (3%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G++ + A    +IV+KL +  Q    + NE   +  I+ G + F +      E+P   E 
Sbjct: 38  GAVVLPARFFSEIVKKLPE--QTMTIEINE-RFQATITSGSAEFTINGLNAEEYPHLPEI 94

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +      +   +LK ++ +T  A++ +E R  L GI  H+  ++ +L AVATD HRL+  
Sbjct: 95  DSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGI--HLVIKNGELLAVATDSHRLSQR 152

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
            + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + + S   RL++G
Sbjct: 153 IIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILGNTSFYTRLLEG 212

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSDKLCMTVDN 301
           ++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL++  S   + ++ + 
Sbjct: 213 KYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINPSVQSVVLSGNT 272

Query: 302 PDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVV 342
           P++G   E ++    E   ++I FN  Y+ + + +    E+ 
Sbjct: 273 PEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQSEIT 314


>gi|290959003|ref|YP_003490185.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22]
 gi|260648529|emb|CBG71640.1| DNA polymerase III, beta chain [Streptomyces scabiei 87.22]
          Length = 376

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 99/396 (25%), Positives = 176/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           VD  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VDEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPSLPQMPNATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D SV ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-SVILALSGSGSGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374


>gi|111658628|ref|ZP_01409278.1| hypothetical protein SpneT_02000218 [Streptococcus pneumoniae
           TIGR4]
          Length = 341

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 71/282 (25%), Positives = 142/282 (50%), Gaps = 9/282 (3%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
            GSI + A    ++V  L D   ++  FKE E   ++ ++ G S   L+     ++P  +
Sbjct: 35  LGSILLEASFFINVVSSLPD---VTLDFKEIE-QNQIVLTSGKSEITLKGKDSEQYPRIQ 90

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  VATD HRL+
Sbjct: 91  EISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTVATDSHRLS 149

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
             ++ +         +++P +++ E   + +    +V++  + ++I    E++S   RL+
Sbjct: 150 QKKLTLEKNSDDF-DVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSENISFYTRLL 208

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTVDN 301
           +G +P+   +IP   +  +  N  NLRQ+++R  ++SS      VKL +    +   V +
Sbjct: 209 EGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDGVVSAHVHS 268

Query: 302 PDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           P++GK  E ++        + I FN  YL++ +  ++S++V 
Sbjct: 269 PEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEKVT 310


>gi|291276245|ref|YP_003516017.1| DNA polymerase III subunit beta [Helicobacter mustelae 12198]
 gi|290963439|emb|CBG39268.1| DNA polymerase III, beta chain [Helicobacter mustelae 12198]
          Length = 354

 Score = 97.8 bits (242), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 74/311 (23%), Positives = 164/311 (52%), Gaps = 20/311 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V ++    +L H    +++K++  ++ H+ L+  +  L++KA+  EI +   +   
Sbjct: 1   MKFHVNKNHFEIILNHLQPFLDKKDSSQITSHIYLETKEEKLQLKATDYEIGLETKVDIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            ++ G+ TV+   + +IV++L++G +I+   +++    ++I  G S F L  F  +E+P 
Sbjct: 61  KEIDGNATVNGKKILEIVKRLKEG-EITIETDSQ---NLHIKQGKSKFKLPMFDANEYPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              ++ +      +S     +++   A+ +   +  L G       +D     VATD  R
Sbjct: 117 NIVDKNITEIHFDTSSFIQSLKKITPAIDSTNQKPELTGALLEF--KDYSFHFVATDTRR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ + DI  Q  +  SII+P+KA+ EI ++ S    ++K+  +E+++ +  E  S   R
Sbjct: 175 LALIKQDI--QSIESFSIILPKKAISEISKLFS---ENIKIFYNETQLIIENEYYSFFTR 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLR-QAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
           LI+G FP+YQ ++P    KEL++     + + ++ + +++S+  Q +K++L   ++    
Sbjct: 230 LINGRFPDYQKILP----KELKIQLQLPKDKVIEAIRLINSLS-QKIKITLRESEVFFET 284

Query: 297 MTVDNPDMGKA 307
           ++++N +  + 
Sbjct: 285 ISIENSEQAQT 295


>gi|253581086|ref|ZP_04858346.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847622|gb|EES75592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 371

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 89/391 (22%), Positives = 190/391 (48%), Gaps = 32/391 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ ++L+ +  + + +  K T+P+   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKIICQKINLLKSVNISLKAVPSKTTMPILECILIDATTNQIKFTTNDMELGIETIVDGI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           ++  G I + A + Y+I+R+L D       K +E  T   I+   + F +      +F  
Sbjct: 61  IEEKGIIALDAKIFYEIIRRLPDNTVT--IKTDEKLT-ATITCEKAKFTIPGKSGEDFAY 117

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P  ++EE   S  ++   LK ++ +T F++A+ E    + G  F I    LK+  V+ D
Sbjct: 118 LPLIEKEE---SLTISQFTLKEMIRQTIFSIASNETNKLMTGELFEIKNNYLKI--VSLD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
           GHR+A+  +++    A    ++VP K + EI +ILS + D  V +  S++ I    +   
Sbjct: 173 GHRIAIRRMELKKDYADR-KVVVPGKTLNEISKILSGEIDDIVNIYFSKNHILFEFDQTI 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKL 295
           +  RLIDGE+     ++    + ++++N       +DR +++      + + + ++ + +
Sbjct: 232 VVSRLIDGEYFRIDQMLSSDYETKIKINKKEFLDCIDRATLLVREGEKKPIIIEITDNSM 291

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSN 354
            + +D+  MG   E++++      + I FN ++L++ +      +V+DDE +   L +  
Sbjct: 292 ELRIDSA-MGSMNENIDIDKEGKDILIGFNPRFLIDAL------KVIDDETISIYLVNPK 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  FIR          D++ N  Y+++P+ I
Sbjct: 345 APCFIR----------DDEENYTYLILPVNI 365


>gi|269124279|ref|YP_003297649.1| DNA polymerase III subunit beta [Thermomonospora curvata DSM 43183]
 gi|268309237|gb|ACY95611.1| DNA polymerase III, beta subunit [Thermomonospora curvata DSM
           43183]
          Length = 375

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 174/396 (43%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  + + +    R + ++  +PV   + L+A D    +K S  + E++  +   
Sbjct: 1   MKFRIDRDALADAVAWTARSLPQRPPVPVLGGMHLEAGD---RLKLSAFDYEVSAQVTTD 57

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +D    G++ V   LL DI R L         +    G++V +  G + F L + P  ++
Sbjct: 58  IDAEEPGTVLVPGRLLADISRALPP----HPVEVTADGSKVMLRCGSAKFTLPTMPVEDY 113

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS  E        + S      V +   A   ++    L G+   I+ E + L +  TD 
Sbjct: 114 PSLPEMPPAAG-SVGSDEFAVAVNQVAIAAGKDDTIPMLTGVRVEIDGETVTLAS--TDR 170

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLN 231
           +RLAV E+    +      + +VP + + +  + L+S  + V+V+L       E  I  +
Sbjct: 171 YRLAVRELQWKPERPDFSAAALVPARTLADTAKSLTSG-AEVEVALGGAGSTGEGMIGFS 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL+DG+F  Y++++P        V      +AV RVS+++  R   V+L+ S
Sbjct: 230 GGGRRTTTRLLDGDFVKYRSLLPTEYAGMAEVQTGPFIEAVKRVSLVAE-RNTPVRLAFS 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++ +     D  +A+E++        ++I FN+ +LL+ +  I SD       V RL 
Sbjct: 289 QGEVVLEAGTGDEAQAVEALEATLEGEDINIAFNHGFLLDGLSQIGSD-------VARLS 341

Query: 352 --SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +      + GK  +       +    Y++MP+R+
Sbjct: 342 FTTPTKPAVLTGKPPEEGATPSYR----YLIMPVRL 373


>gi|306821800|ref|ZP_07455395.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550167|gb|EFM38163.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 396

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 87/387 (22%), Positives = 184/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V + D+ + +    + +  KNT+ +   +  +  +G L +  +  E+ I  +IP  
Sbjct: 30  MKFKVNQRDLSKAISVVQKAVATKNTMEILKGIYFEIEEGNLLLTTNNMEVGIQTSIPCE 89

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G I + A ++ DIVRKL  D    +   EN+L   + +   +S F ++     +FP
Sbjct: 90  VYEEGKIVIDAKIISDIVRKLPNDTIHFTSIDENDL---IEVRCQNSKFNIKYIRCEDFP 146

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +  +  ++ +   KN++ +T++A+++ +        FF I++   K    + D  
Sbjct: 147 MPAYIDERFFVKIEADDFKNMILKTNYAISSNDPNQIYMCHFFKIDKN--KFTMFSVDNF 204

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R  + E +         ++I+    + +I + +      +K +  +  I + I+   ++ 
Sbjct: 205 RFVIMEKEFEDISFDEKNLIINGSILTDIAKTIEDGVEFIKFAFDDKHICVIIDDTIITS 264

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+ G F +Y+++IP +    + V  ++L+ A+DRVS++S+ ++  +KL      + +T 
Sbjct: 265 NLVTGNFIDYESIIPRNEKSTVTVRSSDLKSAIDRVSLLSNNKL--IKLESKDFMMNITS 322

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSVF 358
            N  +G A E +++       +I FN ++LL+I+ N      VDDE +  ++ +S S   
Sbjct: 323 RNDQVGNANEIVDIKLEGENFEIAFNCEFLLDILKN------VDDEYITMKITNSLSPCK 376

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +  +         N  +V++P+RI
Sbjct: 377 ITSESDE---------NYIHVILPVRI 394


>gi|260184855|ref|ZP_05762329.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CPHL_A]
 gi|289445527|ref|ZP_06435271.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           CPHL_A]
 gi|289418485|gb|EFD15686.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           CPHL_A]
          Length = 402

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 94/384 (24%), Positives = 170/384 (44%), Gaps = 35/384 (9%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +  +  +PV   VLL  +D  L I     E+     + A +   GS+ VS  LL DI R 
Sbjct: 33  LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138
           L +   +    E   G  V ++ G++ F L + P  ++P+  T  EE   +  L + +  
Sbjct: 93  LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197
             + +   A   ++    L GI   I  E + L   ATD  RLAV E+   A    +  +
Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250
           ++VP K + E  +      S V++SL        +  + ++      + RL+D EFP ++
Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
            ++P  +     ++   L +A+  V++++  R   V++  +   + ++    D+G+A E 
Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367
           + V Y   P+ I FN  YL + + ++ S     + V F   ++     +R   G D+   
Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376

Query: 368 N-NKDNKVNA-----FYVLMPMRI 385
             N D    A      Y+LMP+R+
Sbjct: 377 GLNGDGPFPAVSTDYVYLLMPVRL 400


>gi|167766863|ref|ZP_02438916.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1]
 gi|317499295|ref|ZP_07957568.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711411|gb|EDS21990.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1]
 gi|291558403|emb|CBL37203.1| DNA polymerase III, beta subunit [butyrate-producing bacterium
           SSC/2]
 gi|316893464|gb|EFV15673.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 367

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 78/343 (22%), Positives = 164/343 (47%), Gaps = 9/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD++  +    + +    T+P+   +L++A+ G +++ A+  E+ I   I   
Sbjct: 1   MKIICTKSDLVHAVSIVSKAVSNNTTLPILKCILIEASTGNIKLTANDMELGIETTIDGQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +IVRKL D        E +   +  I+   + F +      EFPS
Sbjct: 61  IHQPGKIAIEAKLFSEIVRKLPDN---DITIETDDQYKATITCEKACFQIMGQEGEEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  L+   LK ++ +T F+++  E    + G  F +  +D +L  V+ DGHR
Sbjct: 118 LPEIEKNQSITLSQFSLKEVIRQTIFSISDNENTKLMTGELFEV--KDDQLSVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + EI++I+S + D +V + ++   I    ++  +  
Sbjct: 176 ISIRHIELKDHYDPF-KVVVPGKTLQEIVKIISGEMDENVSIYVTSKHILFEFDNTRVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298
           RL++GE+     ++    + ++ +N       +DR S++      + + + ++   L + 
Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLNCIDRASLLIRESDKKPIIIDIADHSLKLN 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + N   G   E + +      + I FN K+L++++  I  +E+
Sbjct: 295 I-NSFFGSMEEEILIQKEGRDLLIGFNPKFLMDVLRVIDDEEI 336


>gi|119394192|gb|ABL74458.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|119394198|gb|ABL74461.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 195

 Score = 97.4 bits (241), Expect = 3e-18,   Method: Compositional matrix adjust.
 Identities = 58/204 (28%), Positives = 118/204 (57%), Gaps = 9/204 (4%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+   + +E   L AVATDG+R+ + +  I   +    S+I+PRK + E+ ++L+
Sbjct: 1   RYYLNGML--LKKEKTLLYAVATDGYRMGITKTSIQEDVIPF-SVIIPRKGIVELYKLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            K   ++  + ++ I + IE L  +++LI+G +P+Y +++    +  + +N   L+Q++ 
Sbjct: 58  IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTSILLKHKNCPIILNSQQLKQSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I++S     +++ + ++K  +  DN +  +A +S  + Y    ++I  N  Y+L+I+
Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEE-ERAEDSFKINYFNNEVEISINVYYILDIL 176

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + ISS       +   L+ SN+S+
Sbjct: 177 NVISS-----KNIFLFLNESNNSI 195


>gi|86609004|ref|YP_477766.1| DNA polymerase III subunit beta [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557546|gb|ABD02503.1| DNA polymerase III, beta subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 439

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 86/377 (22%), Positives = 174/377 (46%), Gaps = 38/377 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE--ITGAIPAS 60
            T E++D+   L    R +  +  +PV  +VL++A+     +  +  ++   I     A 
Sbjct: 30  FTCEQADLSHHLTSVGRAVASRPALPVLANVLVEADAETQRVALTAFDLNLCIRSEFEAQ 89

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G  T+ A LL DIV +L  G   +    + +    V +      + ++S    E+P
Sbjct: 90  VRGSGRTTLPAKLLSDIVSRLPSGPVTLDASSQAQESAPVILMSAAGQYQVRSMSAEEYP 149

Query: 120 S----------------TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163
           +                 +E     + EL    L   + +T FA + +E +  L G+   
Sbjct: 150 TLPEISLRTADADGDFVGEESPTAQALELPIESLLQGIGQTLFAASGDETKQVLTGVHVK 209

Query: 164 INEEDLK-LCAVATDGHRLAVAEVDIVA-QIAKMPSII-----VPRKAVGEILRILSSKD 216
           +   D   L   ATDGHRLA+ +V+     +A     I     +P + + E+ RIL ++ 
Sbjct: 210 LLAGDPPCLEFAATDGHRLAIVQVEAEGIPVASAHGEIGLDFTIPARTLREVERILGTQT 269

Query: 217 --SSVKVSLSESRIHLNIESLS--------MSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
             S+V++    S++   +   +        ++ RL++G++P+Y  +IP   ++++ +   
Sbjct: 270 AASTVELRFDRSQVQFVLPPRASKTQCQQRITSRLLEGQYPDYNRLIPKQFERQVTLERR 329

Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
            L ++++RV ++++ R   VK +LS  +  L ++ + PD+G   ES+ V  +   +++ F
Sbjct: 330 PLIESLERVGVLAAQRNDIVKFNLSAATQTLRISTEAPDVGSGEESLPVQMSGPDLELAF 389

Query: 325 NYKYLLEIIDNISSDEV 341
           N +YLL+ +    + +V
Sbjct: 390 NVRYLLDALRVFHTQQV 406


>gi|228908420|ref|ZP_04072263.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
 gi|228851211|gb|EEM96022.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
          Length = 271

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 131/273 (47%), Gaps = 18/273 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I+   +NE    + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMP--SDIAIKSKNE--QIIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+  HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGL--HIVLSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRISSDVKA--NCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
            + ++  RLI+G++PN  N+IP  ND +  +N 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIP--NDFKTIINV 263


>gi|116326857|ref|YP_796577.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116329804|ref|YP_799522.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119601|gb|ABJ77644.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123493|gb|ABJ74764.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 373

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 100/401 (24%), Positives = 192/401 (47%), Gaps = 44/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V  SD L+ +     +I  +    +  ++ ++A +  + + A+  EI I  ++ A 
Sbjct: 1   MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLSAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF-YLQSFP----- 114
           V   GSI++ A  L    + +        F+E  L  E   S GDS+  Y+         
Sbjct: 61  VIQAGSISLPAKQLSSFFKTIH-------FEETILSLEE--SDGDSSIVYITDASGKNDY 111

Query: 115 ESEFPSTKEEE----------YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164
           +S+      EE           + SF   S+++ +++ +T +A+A E+ R+  NG++  +
Sbjct: 112 KSKISGMDAEEIKTISKVSPSQISSF--PSNLINDMIRKTSYAIAHEDQRFIFNGLY--M 167

Query: 165 NEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS 224
             +  KL  V TDG RL   E  + + +    SIIVP KAV EI +++++ ++   + L 
Sbjct: 168 IPDGNKLTFVGTDGRRLCKIERTLPSPLQFKDSIIVPAKAVREISKMIATSETG-NLGLI 226

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           +S+I+ +  ++ +  +LI+G FPNY+ VIP S    + ++    + ++ +V   +    +
Sbjct: 227 DSQIYASANNIELLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSR 286

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            VKL+ S + L +        +A  +  + Y+   + I F  +YL++I  +I  +E+   
Sbjct: 287 QVKLTFSKNNLNLFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSIDDNEI--- 343

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ F  DSS+  +F    D +             V+MPM++
Sbjct: 344 KIEFS-DSSSPVIFKDPSDPE----------FISVIMPMKL 373


>gi|183602669|ref|ZP_02964033.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682501|ref|YP_002468884.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190068|ref|YP_002967462.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195474|ref|YP_002969029.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218087|gb|EDT88734.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620151|gb|ACL28308.1| DNA polymerase III, beta subunit [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248460|gb|ACS45400.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250028|gb|ACS46967.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793055|gb|ADG32590.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 374

 Score = 97.1 bits (240), Expect = 4e-18,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +     +I+ +   P+   V L+A DG +++ A   EI     I A 
Sbjct: 1   MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L   A+ ++   NE  T + I+ G + F LQ  PESE+P 
Sbjct: 61  VDESGTVVVLGKLLADISKVLP--AEKTYLSANE--TTMTITSGPATFTLQLMPESEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +       ++ +      V +   A+A +E R  L G+      E++ L   +TD  R
Sbjct: 117 LPQLPPQIG-QVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHL----NIES 234
           L  A        A + +  + R +   +++I  S D  ++V + L  +   L    N   
Sbjct: 174 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +S +V+LIDGEFP    +   S   +  +   +L  A  RVS+++  R   +++  +  +
Sbjct: 232 IS-TVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVAE-RNAPIRMVFTDQQ 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T    D   A E++ +  +   + + FN  YL E +  IS     +  +  ++ ++ 
Sbjct: 290 LTLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAV 344

Query: 355 SSVFIRG-KDKDSKNNKDNKVNAFYVLMPMR 384
             V   G +D+D + +   +    Y+L+PMR
Sbjct: 345 KPVEFNGQQDEDGEESMSYR----YLLVPMR 371


>gi|15671984|ref|NP_266158.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281490500|ref|YP_003352480.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis
           KF147]
 gi|18202807|sp|Q9CJJ1|DPO3B_LACLA RecName: Full=DNA polymerase III subunit beta
 gi|12722837|gb|AAK04100.1|AE006239_2 DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281374318|gb|ADA63851.1| DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis
           KF147]
 gi|326405599|gb|ADZ62670.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis
           CV56]
          Length = 380

 Score = 97.1 bits (240), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 82/342 (23%), Positives = 165/342 (48%), Gaps = 22/342 (6%)

Query: 16  HACRIIER----KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVC 64
           +A RI ++    K TIP    + ++  +  + +  S  +I I   +P         +   
Sbjct: 13  NALRITKQAIGSKVTIPALTKLKIEVEENGITLIGSNGQISIKNFLPVDNKDASMLISGT 72

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           GS+ + A    ++V +L +   + F ++ +   +V ++ G S   L+      +P  +E 
Sbjct: 73  GSVLLEAAFFENVVSQLPE-VTLEFTEKEQ--KQVLLTSGKSEITLKGLDSEIYPHLQEI 129

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVATDGHRLAV 183
               S ++   VLK +   T FA++T+E R    G+    ++  +LK  AVATD HR++ 
Sbjct: 130 SEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLETLSTGELK--AVATDSHRMSQ 187

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + +     K   +I+P K++     + ++ +  +++ +S S++    E++S   RLI+
Sbjct: 188 RLLPLEDSELKF-DVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFRNETISYYSRLIE 246

Query: 244 GEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTVD 300
           G +P+   +IP   D  L +  +   LR  +DR  +++ +     VKL++S D +  T +
Sbjct: 247 GSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVSGDSVVTTAN 306

Query: 301 NPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEV 341
           +P++G   E +     E   + I FN +YL++ +  I + EV
Sbjct: 307 SPEVGSVHEELTALSKEGNDLAISFNPEYLIDALKVIKAPEV 348


>gi|239930174|ref|ZP_04687127.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
 gi|291438516|ref|ZP_06577906.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672]
 gi|291341411|gb|EFE68367.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672]
          Length = 376

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 176/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEEGTVLVSGRLLADISRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  + V++   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPNATG-TVPGEVFSSAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +     ++ +VP K + +  + L+S D  V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-QVILALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374


>gi|317472419|ref|ZP_07931744.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900139|gb|EFV22128.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 367

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 88/386 (22%), Positives = 183/386 (47%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD++  +    + +  K T+P+   +L++A+ G + + A+  E+ I   I  +
Sbjct: 1   MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L ++IVRKL D        E +   +  I+   + F++     SEFP 
Sbjct: 61  ILEQGKIALDAKLFFEIVRKLPDN---DVTIETDSDYKATITCEKACFHIVGQEGSEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  L+   LK ++ +T F+++  E    + G  F    ED KL  V+ DGHR
Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFE--AEDKKLNVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + EI +I+S   +  V + ++   I    +   +  
Sbjct: 176 ISIRNIELKESYDSF-KVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298
           RL++GE+     ++    + ++ +N       +DR S++      + + ++++ + L ++
Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNSSV 357
           + +   G   E++ +      + I FN K+L++++       V+DDE +   L +  +  
Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVL------RVIDDEEINIYLVNPKAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FI          KD+  +  Y+++P+
Sbjct: 348 FI----------KDDSESYIYLILPV 363


>gi|289177771|gb|ADC85017.1| DNA polymerase III, beta chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 395

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 98/391 (25%), Positives = 178/391 (45%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +     +I+ +   P+   V L+A DG +++ A   EI     I A 
Sbjct: 22  MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 81

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L   A+ ++   NE  T + I+ G + F LQ  PESE+P 
Sbjct: 82  VDESGTVVVLGKLLADISKVLP--AEKTYLSANE--TTMTITSGPATFTLQLMPESEYPD 137

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +       ++ +      V +   A+A +E R  L G+      E++ L   +TD  R
Sbjct: 138 LPQLPPQIG-QVDAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 194

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHL----NIES 234
           L  A        A + +  + R +   +++I  S D  ++V + L  +   L    N   
Sbjct: 195 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 252

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +S +V+LIDGEFP    +   S   +  +   +L  A  RVS+++  R   +++  +  +
Sbjct: 253 IS-TVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVAE-RNAPIRMVFTDQQ 310

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T    D   A E++ +  +   + + FN  YL E +  IS     +  +  ++ ++ 
Sbjct: 311 LTLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAV 365

Query: 355 SSVFIRG-KDKDSKNNKDNKVNAFYVLMPMR 384
             V   G +D+D + +   +    Y+L+PMR
Sbjct: 366 KPVEFNGQQDEDGEESMSYR----YLLVPMR 392


>gi|240172092|ref|ZP_04750751.1| DNA polymerase III subunit beta [Mycobacterium kansasii ATCC 12478]
          Length = 399

 Score = 96.7 bits (239), Expect = 5e-18,   Method: Compositional matrix adjust.
 Identities = 93/403 (23%), Positives = 180/403 (44%), Gaps = 36/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + +    E +    + +  +  +PV   VLL  +D  L I  SG + E++  +  +
Sbjct: 13  LKFRLVKESFAEAVSWVAKNLPTRPAVPVLSGVLLTGSDDGLTI--SGFDYEVSAEVQVA 70

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            ++   GS+ VS  LL DI R L +   + F+ +   G  V ++ G++ F L +    ++
Sbjct: 71  AEIASPGSVLVSGRLLSDITRALPN-KPVDFYVD---GNRVALTCGNARFSLPTMAVEDY 126

Query: 119 PS--TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           P+  T  ++   +  L S +    + +   A   ++    L GI   I    + L   AT
Sbjct: 127 PTLPTLPDD---TGTLPSDLFAEAISQVAIAAGRDDTLPMLTGIRVEIAGHTVVLA--AT 181

Query: 177 DGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRI 228
           D  RLAV E+   A    +  S++VP K + E  +  +S  S V++SL        +  +
Sbjct: 182 DRFRLAVRELTWTALSPDIEASVLVPAKTLAEAAKA-NSDGSDVRLSLGAGTGVGKDGLL 240

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            ++      + RL+D EFP ++ ++P  +      +   L +A+  V++++  R   V++
Sbjct: 241 GISGNGKRSTTRLLDAEFPKFRQLLPVEHTAVATADVAELTEAIKLVALVAD-RGAQVRM 299

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             +   L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F
Sbjct: 300 EFAEGTLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSLHS-----ERVSF 354

Query: 349 RLDSSNSSVFIR-GKDKDSKNNKDNKVNA-----FYVLMPMRI 385
              +      +R    +D+         A      Y+LMP+R+
Sbjct: 355 GFTTPGKPALLRPASAEDATPTGSGPFAAVPTDYVYLLMPVRL 397


>gi|229097210|ref|ZP_04228172.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29]
 gi|228686021|gb|EEL39937.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29]
          Length = 376

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   + I   IP S
Sbjct: 1   MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  IEDEQIATILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QIITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P +EFP+          ++ +  L  + ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLV 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I +  AK  + IVP   + E+L++++S    V + LS+S +    
Sbjct: 175 CAATDSHRLAIRETPISSD-AKA-NCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V    + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  V     E  ++I F+ +++++ +  I+ + V
Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAITEEMV 345


>gi|119355859|ref|YP_910503.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353208|gb|ABL64079.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 376

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 184/391 (47%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T     + + +    + I  K   P   ++ L    G L + AS  E+ IT     S
Sbjct: 3   MKFTAPIRLLQDAVNRVSQAIPSKAIDPRFENIHLAIEPGKLTLFASDGEMSITAKSEIS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE----LGTEVNISHGDSNFYLQSFPES 116
            +  G+I++ A  L D +R + D  +++F  E +     GT V+IS     + +  F ES
Sbjct: 63  SEDTGNISIKARTLQDFLRSMYD-TEVTFSIERQEISDHGT-VSISTDKGKYKIPCFFES 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +     E+ YV + +L S  L+ L+++T FA + + +R  + G+ F +  E   + AV+T
Sbjct: 121 KM-EIYEKNYVINLDLPSVELQYLIQKTIFACSVDGMRPAMMGVLFEL--ESSSITAVST 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRL       V ++     I+V  + +  + ++   +   +++   +  +     ++ 
Sbjct: 178 DGHRLVRCRKSTVIEVEDKQKIVVSARVLSILQKLPLHETVIIQIDQDKRFVRFTQNNVV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +   LI   +PNY+ VIP  +DK++  + +N+  +V RV   SSV    +K+ L+   + 
Sbjct: 238 IDASLIVEPYPNYEAVIPVIHDKQVSCDRSNIYDSVKRVGRFSSV--GDIKMVLADSIIK 295

Query: 297 MTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +  +N + G+ A E +   Y    + I FN K++   + +I      + E++  L S  +
Sbjct: 296 VMAENTNEGESAQEELPCSYTGEDITIGFNAKFIEAALAHID-----EKEIIIELKSPTT 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVL-MPMRI 385
           +V         K  ++ +  +  +L MP+RI
Sbjct: 351 AVIF-------KPVQEKETGSLIILVMPVRI 374


>gi|328883702|emb|CCA56941.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 376

 Score = 96.7 bits (239), Expect = 6e-18,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 173/396 (43%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  E        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPEMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPESPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGKGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374


>gi|257065522|ref|YP_003151778.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548]
 gi|256797402|gb|ACV28057.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548]
          Length = 370

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 87/338 (25%), Positives = 168/338 (49%), Gaps = 21/338 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + D++  +  A + + +   I +   +  + +   L ++A   EI I   + A 
Sbjct: 1   MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP-----E 115
           VD  G + V A L+ +IVRKL +   I    EN+ G         S+F L +F      +
Sbjct: 61  VDEEGEMAVKASLISNIVRKLPNDIVII---ENKNGKISIKCSS-SSFNLIAFDYYDKND 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              P TK        E+A+ +LK  + +T FA + +E +  L GI F + E  + +  VA
Sbjct: 117 INIPETK------PIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNM--VA 168

Query: 176 TDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            DG+R+++ ++ +        S  I+P++++ E  RI+S  D + K+  +E+ +     S
Sbjct: 169 LDGYRVSLKKIKLDYPTDYEDSEYIIPKRSLLEWSRIVSD-DLTTKLYKNENDLIFTSGS 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
            +M  ++ID  F +Y+N+I   ++  + ++  +L  ++DR  ++S   R   +K+ L SD
Sbjct: 228 TTMQCKVIDKNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIEL-SD 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
            + +   N ++G   E+++V      ++I FN +Y+ E
Sbjct: 287 NVMLIKSNSEIGDVREAIDVEQKGNDLEIAFNARYMQE 324


>gi|294790225|ref|ZP_06755383.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304]
 gi|294458122|gb|EFG26475.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304]
          Length = 374

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 97/393 (24%), Positives = 183/393 (46%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ S   E +    R+I  +   P+   V L+A DGLL++ A   E+     I A 
Sbjct: 1   MKVEIDSSAFSEAVSWTTRVIPARPATPILTGVKLEAADGLLQLSAFDYEVSARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   V   LL DI + L  G        +  G ++ +S G S F L   P+S++P 
Sbjct: 61  VDESGLAVVQGKLLADIGKALPVGK----IYLSTSGAKLTVSGGQSTFSLPLMPQSDYPE 116

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  + + S +  +    + V +   A++ EE R  L G+    +  D K+   +TD  
Sbjct: 117 LPQIPDALGSVD--ADTFAHAVAQATVAISREESRPVLTGVKMIFS--DGKVQMTSTDRF 172

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL-----SESRIHLNIE 233
           RL+ +          + + ++ R   G +LR +  S D+S  V +     S + +  +  
Sbjct: 173 RLSRSTFAWSPSADDIDTSLLVR---GTLLRDVARSLDTSQNVVVGFNPDSPTLVGFDNA 229

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + +LIDGEFP+   +        + ++   L  A+ RVS+++  R   +++S  ++
Sbjct: 230 GKISTAQLIDGEFPSVDRLFAADYPIHVVLDKNALIDAIRRVSLVAE-RNAPIRMSFENN 288

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ ++  + D  +A E+++V  +  P+ I FN  YL+E +       V +  V  ++ S 
Sbjct: 289 QVTLSAGSADESQAKETLSVDMDGDPITIAFNPAYLVEGL-----SAVYEPYVRMKMISP 343

Query: 354 NSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             +V   G +D+D + + D +    Y+L+P+R 
Sbjct: 344 TKAVEFNGQQDQDGEESLDYR----YLLVPVRF 372


>gi|229816998|ref|ZP_04447280.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM
           20098]
 gi|229785743|gb|EEP21857.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM
           20098]
          Length = 374

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 96/391 (24%), Positives = 178/391 (45%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ + + P+   + L+A DG L + A   EI     I A 
Sbjct: 1   MKVEVNSGALADAVAWTTRVIDARPSNPILAGIRLEAADGALRLSAFNYEISARDHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI V   LL DI + L   ++ ++   N   T + I+ G S F +Q  P +E+P 
Sbjct: 61  VDESGSILVLGKLLADITKSLP--SEKTYLSANS--TTLTITSGKSTFTMQLMPNAEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +   ++ +      V +   A++ EE R  L G+    + +  K+   +TD  R
Sbjct: 117 LPSMPGMLG-QVDAPTFIQAVSQACVAVSREENRPVLTGVRMQFDGD--KVVLTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-----SESRIHLNIES 234
           LA A      Q   + +  + R   G +LR +S S +    ++L     + S +  +   
Sbjct: 174 LARATFSWSPQDPTVHTTTLVR---GSLLRDVSRSLNERQNLTLDFDTENPSLLGFDNAG 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            S + +LIDGEFP    +       +  ++  +L  A+ RV++++  R   +++  S  +
Sbjct: 231 RSSTSQLIDGEFPAVDRLFADDYPIQAVIDKQSLIGAIKRVALVAE-RDAPIRMVFSGQE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++    D  +A E ++V  +   + + FN  YL+E +  IS     +  V  +L ++ 
Sbjct: 290 LTLSAGAVDEAQAKEIIDVDMDGDDITVAFNPSYLIEGLSAIS-----EPYVRMKLTTAV 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V   G+    + + D  ++  Y+L+PMR 
Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372


>gi|31791179|ref|NP_853672.1| DNA polymerase III subunit beta [Mycobacterium bovis AF2122/97]
 gi|121635885|ref|YP_976108.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|121635912|ref|YP_976135.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224988385|ref|YP_002643052.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|32700067|sp|O33914|DPO3B_MYCBO RecName: Full=DNA polymerase III subunit beta
 gi|31616764|emb|CAD92864.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121491532|emb|CAL69986.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|121491559|emb|CAL70016.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224771498|dbj|BAH24304.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 402

 Score = 96.3 bits (238), Expect = 7e-18,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 35/384 (9%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +  +  +PV   VLL  +D  L I     E+     + A +   GS+ VS  LL DI R 
Sbjct: 33  LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138
           L +   +    E   G  V ++ G++ F L + P  ++P+  T  EE   +  L + +  
Sbjct: 93  LPN-KPVGVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197
             + +   A   ++    L GI   I  E + L   ATD  RLAV E+   A    +  +
Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250
           ++VP K + E  +      S V++SL        +  + ++      + RL+D EFP ++
Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
            ++P  +     ++   L +A+  V++++  R   V++  +   + ++    D+G+A E 
Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367
           + V Y   P+ I FN  YL + + ++ S     + V F   ++     +R   G D+   
Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376

Query: 368 NNKDN------KVNAFYVLMPMRI 385
               N        +  Y+LMP+R+
Sbjct: 377 GLNGNGPFPAVSTDYVYLLMPVRL 400


>gi|182437494|ref|YP_001825213.1| DNA polymerase III subunit beta [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|239942669|ref|ZP_04694606.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|239989128|ref|ZP_04709792.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           11379]
 gi|291446130|ref|ZP_06585520.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|326778149|ref|ZP_08237414.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466010|dbj|BAG20530.1| putative DNA polymerase III beta subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|291349077|gb|EFE75981.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|326658482|gb|EGE43328.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 376

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           +D  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  IDEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     + A   ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENADASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ +   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374


>gi|152991599|ref|YP_001357320.1| DNA polymerase III subunit beta [Sulfurovum sp. NBC37-1]
 gi|151423460|dbj|BAF70963.1| DNA polymerase III, beta subunit [Sulfurovum sp. NBC37-1]
          Length = 355

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 95/351 (27%), Positives = 176/351 (50%), Gaps = 31/351 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE---ITGAI 57
           MKI  ++  I  +L +    +E+K+   ++ H+L  + +    +KA+  EI    +T  I
Sbjct: 1   MKIRAQKQIIESILINLQPFLEKKDASQITSHILFSSQNDKCIVKATDSEIGLQIVTDHI 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF-PES 116
              ++  GS T +   L DI+R L+D   I    +N L     +    S F L +F P +
Sbjct: 61  --LIESEGSFTANGKKLLDIIRILKDDEIIMEILDNTLI----VKQKHSKFKLPTFDPNA 114

Query: 117 --EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              FPS  E+  +    L  S+++NL ++   A+ T   ++ LNG   +I  +   L  V
Sbjct: 115 YPAFPSVDEKPQITLDSL--SLIQNL-KKISPAIDTNNPKFELNGALINIKHDSTDL--V 169

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  RLA+A   I    ++  S+IVP+KA+ EI ++   +   + +   E+ + +  E+
Sbjct: 170 GTDTRRLAIAS--IPGNNSEELSLIVPKKAILEIQKLFLDQ---INIYYDETNLIITNEN 224

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
                RLI+G+FP+YQ +IP S    + +     ++ +D + +++++  Q +K++L SD 
Sbjct: 225 YFFYTRLINGKFPDYQRIIPASVKHSITLPK---KEMIDSIKMITTIS-QEIKMTLLSDA 280

Query: 295 L---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +    ++ DN +    IE +    NE   ++ FN +Y+L+ I  I  +E +
Sbjct: 281 IIFNSLSADNVEAKTEIE-IGTGLNEK-YELSFNSRYILDFISQIDKNEFL 329


>gi|332638151|ref|ZP_08417014.1| DNA-directed DNA polymerase III, beta chain [Weissella cibaria KACC
           11862]
          Length = 376

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 171/358 (47%), Gaps = 31/358 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  ++ + +  R I  + ++P+   V L  ++  L +  S  +I I   IP +
Sbjct: 1   MQFTINRAVFIKAMNNVSRAISSRTSMPILTGVKLVLDNNGLTLTGSDTDISIETVIPVT 60

Query: 61  VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            D         G++ + A    +IV++L      +F   N  G +  I+  +S F +   
Sbjct: 61  DDQATLQVSEPGALVLPAAFFSNIVKRLPGE---TFTLSNTTGFQAKITSENSEFDINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   +  L +  L  ++ +T  A++ +  +  L G+ F +   +L   A
Sbjct: 118 DANNYPHLPEIEVRNNLTLPAETLTEVIGQTVIAVSKQLSQPILTGVHFILAGGNL--TA 175

Query: 174 VATDGHRLA-----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           VATD HRLA       + D+ A       IIVP  ++ ++  +L   ++ V V ++E+++
Sbjct: 176 VATDRHRLAQRTVAFGDSDVSA------DIIVPGPSLNQLQAMLDEVET-VDVRVAENQV 228

Query: 229 HLNIES-LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
              + +  +   RL++G +P+   +IP      L +N  +L Q ++R +++S   R   +
Sbjct: 229 IFQLGANTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVI 288

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341
           + ++S +K  ++ ++P++G+  E   ++  E   D   I FN  Y+ E + +   +++
Sbjct: 289 QFTVSDEKSLISSNSPEVGRVEE--QIFAAETAGDELTISFNPDYMREALKSFGDEQI 344


>gi|258650273|ref|YP_003199429.1| DNA polymerase III subunit beta [Nakamurella multipartita DSM
           44233]
 gi|258553498|gb|ACV76440.1| DNA polymerase III, beta subunit [Nakamurella multipartita DSM
           44233]
          Length = 408

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 86/357 (24%), Positives = 154/357 (43%), Gaps = 28/357 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK  V R D+ + +    + +  +  +PV   +LL+ +   L +     E+     +   
Sbjct: 1   MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60

Query: 58  ------------PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105
                       PA  D    + VS  LL +I R L             LG +V+I  G 
Sbjct: 61  TLDELEPDAPGGPAGTD---RVLVSGRLLAEITRSLP----AKPVDLAVLGPKVSIVAGS 113

Query: 106 SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165
           + F L + P  ++P   +     S  + S+     V +T  A   ++    L GI   I+
Sbjct: 114 ARFTLPTMPVEDYPPLPQMPAA-SGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEID 172

Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS 224
            + L L A  TD  RLAV E+        + + ++VP + + +  + L      V V+L 
Sbjct: 173 GDRLTLAA--TDRFRLAVRELGWHPDQENLSTAVLVPARTLADAAKTLGGA-KQVTVALG 229

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           E  + L+      +VRL+D EF  Y++++P S+   + V    L +++ RV++++  R  
Sbjct: 230 EGLLGLDAGDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVTD-RGH 288

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            ++L +    L +T    D G+A E +    +   + I FN  YLL+ +  + +D V
Sbjct: 289 HLRLQVGEGALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHADTV 345


>gi|297622254|ref|YP_003703688.1| DNA polymerase III subunit beta [Truepera radiovictrix DSM 17093]
 gi|297163434|gb|ADI13145.1| DNA polymerase III, beta subunit [Truepera radiovictrix DSM 17093]
          Length = 363

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 85/348 (24%), Positives = 161/348 (46%), Gaps = 26/348 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI--TGAIP 58
           M + V R  + E+L H  RI+  +++ P    + L+ +DG L +  S  ++++  T A+ 
Sbjct: 1   MNVEVPRKALGEVLAHLERIVPSRSSNPSLSLLRLELSDGHLTLSGSNLDLDLQATLAVS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ----SFP 114
           +S +  G   + AH+   + R L  G  +    E+    E+ +  G     LQ      P
Sbjct: 61  SSGERGGPWALPAHVFGQVARALP-GELVELTFES---AELEVRSGSYATKLQLMTTDLP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +  FP+     +      ++  L   +    +A A  E +    G+   ++  D +  AV
Sbjct: 117 DLVFPNDLPGRF------SAERLGAALSHVRYAAAVAEYQAIFRGVKLELH--DGRTRAV 168

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG RLA   +     +A+   I++P ++  E++++L   D   K+ LSE ++ L    
Sbjct: 169 ATDGFRLAYYHLGASTGLAQ--DIVIPARSADELVKLLG--DGETKLGLSEGQLSLETGP 224

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSD 293
             ++V+L++G FP+Y+ VIP      + +    L + V RV++M+       V L +   
Sbjct: 225 YRLNVKLMEGTFPDYERVIPSHFPVSITLAARTLLEGVQRVAVMADRTANNRVDLFVRDG 284

Query: 294 KLCMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSD 339
            L +T +    G+A E++ V    +E  + + +N  YLL  +  +  D
Sbjct: 285 TLQITAEG-AYGRAQEALAVAQEGSESEIALAYNADYLLSALRPVGGD 331


>gi|160878164|ref|YP_001557132.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg]
 gi|160426830|gb|ABX40393.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg]
          Length = 370

 Score = 96.3 bits (238), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 84/372 (22%), Positives = 182/372 (48%), Gaps = 26/372 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +++++L  +  A + +  K+T+P+   ++++  +  +++ ++  EI I   +  S
Sbjct: 1   MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIETIVKGS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSFP 114
           +   GS+ ++A +  +I+RKL D         NE+  E +      I+   + F +    
Sbjct: 61  IISNGSVAINAKVFSEIIRKLPD---------NEVNVETDEKFMTTITCEKAKFTIAGKS 111

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP     E   + EL+   LK ++ +T F+++  E    + G  F IN  +L++  V
Sbjct: 112 AEEFPMLPTIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRV--V 169

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIE 233
           + DGHR+++ +V++    A    I+VP K + E+ +ILS + S  V +  ++  +    +
Sbjct: 170 SLDGHRISIRKVELKNSYAP-KKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFD 228

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSS 292
              +  RLI+GE+     ++    + ++++N       +DR +++      + + + +  
Sbjct: 229 DTLVLSRLIEGEYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIED 288

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            KL + + N  +G   E +++      + I FN K+L++ +  I      D+EV   L +
Sbjct: 289 KKLELKI-NTSIGTMDEDIDIEKEGKDILIGFNPKFLIDALRVID-----DEEVEIYLIN 342

Query: 353 SNSSVFIRGKDK 364
             +  FI+ K++
Sbjct: 343 PKAPCFIKDKEE 354


>gi|229103294|ref|ZP_04233977.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28]
 gi|228680133|gb|EEL34327.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28]
          Length = 376

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 91/353 (25%), Positives = 163/353 (46%), Gaps = 20/353 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   + I   IP S
Sbjct: 1   MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+   + I    +NE    + I   +    L  
Sbjct: 61  IEDEQIATILQAGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QIITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P +EFP+          ++ +  L  + ++T FA+A  E R  L G+  HI  +  KL 
Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGV--HIELDHNKLV 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  +V+  AK  + IVP   + E+L++++S    V + LS+S +    
Sbjct: 175 CAATDSHRLAIRET-LVSSDAKA-NCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLS 291
            + +   RLI+G++PN  N+IP      + V    + Q VDR S+++S      V L + 
Sbjct: 233 GTTTFYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDKLCMTVDNP-DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++       N   +GK  E+  V     E  ++I F+ +++++ +  I+ + V
Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAITEEMV 345


>gi|302870734|ref|YP_003839370.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302573593|gb|ADL41384.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 368

 Score = 95.9 bits (237), Expect = 8e-18,   Method: Compositional matrix adjust.
 Identities = 92/357 (25%), Positives = 170/357 (47%), Gaps = 27/357 (7%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           VL++A D ++    +  ++++     A +   G+  V A L  DIV+KL DG      +E
Sbjct: 33  VLIEAEDSII-FTTNDMKMQMQTEFKAEILQRGAALVKAKLFSDIVKKLPDGDVEVIREE 91

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           NE    V I      F L +    +FP  +++      E  +S  ++ +++  FA + +E
Sbjct: 92  NE----VKIRSQKIEFRLPTLDPLDFPKMEKKPSESFCEFVASEFEDAIDKVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   EED  +  V  DGHRLA+ ++  V ++    S IVP   + +I +I+
Sbjct: 148 TRPTFTGVLFE-REEDEFVNLVGMDGHRLAICKIKPV-EVDGNFSKIVPADNLDDITKII 205

Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             +++  V+VS  E++    I S ++ V LI G+F +Y++ IP     ++ ++   L   
Sbjct: 206 DIEEAEKVRVSFYENQATFEIGSTTVIVTLISGKFFDYKSAIPTEYSTKISISADVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           ++R SI+S      IQAV    +     +   + D G+  E +        + I FN KY
Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMMFTVRSMSAD-GRFEEDVLCSVEGKDIRIGFNVKY 324

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            L+++      +V+D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 325 FLDVL------KVLDGEI---------NLFITSQTSPSIVQKPDDENYIYLVLPIKM 366


>gi|23335940|ref|ZP_00121171.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bifidobacterium longum DJO10A]
 gi|23465221|ref|NP_695824.1| DNA polymerase III subunit beta [Bifidobacterium longum NCC2705]
 gi|189440297|ref|YP_001955378.1| DNA polymerase III subunit beta [Bifidobacterium longum DJO10A]
 gi|227547510|ref|ZP_03977559.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239622841|ref|ZP_04665872.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296453189|ref|YP_003660332.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312133631|ref|YP_004000970.1| dnan [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482360|ref|ZP_07941380.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688193|ref|YP_004207927.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690195|ref|YP_004219765.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325849|gb|AAN24460.1| DNA polymerase III, beta chain [Bifidobacterium longum NCC2705]
 gi|189428732|gb|ACD98880.1| DNA polymerase sliding clamp subunit [Bifidobacterium longum
           DJO10A]
 gi|227212025|gb|EEI79921.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514838|gb|EEQ54705.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517732|emb|CBK71348.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|296182620|gb|ADG99501.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311772889|gb|ADQ02377.1| DnaN [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916240|gb|EFV37642.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455051|dbj|BAJ65673.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459529|dbj|BAJ70149.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 374

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 91/391 (23%), Positives = 181/391 (46%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ + + P+   V L+A DG L+  A   EI     I A 
Sbjct: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L+  ++ ++   +  G+ + I+ G S F LQ  P++E+P 
Sbjct: 61  VDEAGSVLVQGKLLADITKSLR--SEKTYLVTD--GSTLTITSGKSKFTLQLMPDTEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +   ++ +      V +   A++ EE R  L G+      +  K+   +TD  R
Sbjct: 117 LPVVPAMLG-QVDAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIESLS 236
           LA A      Q   + +  + R   G +L+ +  + D    + L   ++S   L  E+  
Sbjct: 174 LARATFTWTPQNPDVDTTTLVR---GSLLKDVARALDEHQNIRLDFDADSPTLLGFENAG 230

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +       +  VN  +L  A+ RV++++  R   ++++ +  +
Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAE-RNAPIRMTFTGQE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  + D  +A E++++  +   + + FN  YL E +       V +  V  ++ +  
Sbjct: 290 VALSAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGL-----SAVTEPFVRIKMTTPV 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V   G+    + + D  ++  Y+L+PMR 
Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372


>gi|311897308|dbj|BAJ29716.1| putative DNA polymerase III subunit beta [Kitasatospora setae
           KM-6054]
          Length = 376

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 94/354 (26%), Positives = 156/354 (44%), Gaps = 35/354 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +  A R +  +  +PV   +LL A +G L +  SG + E++  +   
Sbjct: 1   MKFRVERDVLAEAVAWAARSLPARPPVPVLAGLLLTAQEGSLAL--SGFDYEVSARVELE 58

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115
            DV   G++ VS  LL DI R L +       +  E+   G  V++  G S F L + P 
Sbjct: 59  ADVEEAGTVLVSGRLLNDISRNLPN-------RPVEISTDGARVSVVCGSSRFTLPTLPV 111

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P+  +        +   V  + V +   A   ++    L G+   IN   + L   A
Sbjct: 112 DEYPALPQMPTATG-TVPGDVFASAVSQAAVAAGRDDTLPVLTGVRVEINGSGITLA--A 168

Query: 176 TDGHRLAVAEV------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS----- 224
           TD +R AV E+      D +  +A     +VP K + +I + L S D  V ++LS     
Sbjct: 169 TDRYRFAVRELLWKPEQDDINAVA-----LVPAKTLQDIAKSLGSGD-QVTIALSAGGAG 222

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           E  I         + RL++GEFP ++++ P        V      +A+ RVS+++  R  
Sbjct: 223 EGLIGFEGAGRRTTTRLLEGEFPKFRSIFPTEFSAVAAVQTQPFLEALKRVSLVAE-RNT 281

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            V+L+     L +   + D  +A E ++       + I FN  YL E +  I +
Sbjct: 282 PVRLNFEQGVLTLEAGSGDDAQATERVDADLEGDDISIAFNPGYLEEGLKAIDA 335


>gi|307331908|ref|ZP_07611004.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306882426|gb|EFN13516.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 376

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 177/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +  +PV   +L++A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILMKAEEGALSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           ++  G++ VS  LL DI R L +       +  E+   G  V +  G S F L + P  E
Sbjct: 61  IEDDGTVLVSGRLLADICRALPN-------RPVEISSDGVRVTVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P T  +    +  +   V      +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YP-TLPQMPTATGTVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +   + ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+L+  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETPPFVEAVKRVALVAE-RNTPVRLTFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++   +   + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAMDAEADEAYK----YLIMPVRL 374


>gi|296268000|ref|YP_003650632.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833]
 gi|296090787|gb|ADG86739.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833]
          Length = 378

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 181/396 (45%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R  + E +    R +  + ++PV   + L+  D    +K SG + E++  +   
Sbjct: 1   MLFRIDRDQLAEAVAWTARSLPTRPSMPVLAGMRLEVTDDH-RLKLSGFDYEVSAEVTLD 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ++    G + VS  LL +I R L   AQ   F  +  G +  ++ G + F L + P  ++
Sbjct: 60  LETGEPGVVLVSGRLLAEITRALP--AQPVNFTLD--GAKAVVTCGSTRFTLLTMPVEDY 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS           + S V  + V +   A+  ++    L G+   I E DL   A ATD 
Sbjct: 116 PSLPVMPPAAG-RVGSDVFASAVAQVAVAVGKDDTLPMLTGVRMEI-EGDLITLA-ATDR 172

Query: 179 HRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV E+    AQ       ++P + + +I + L    + V+++LS     E  I  + 
Sbjct: 173 YRLAVRELKWEPAQPGLQAVAMIPGRTLADIAKALGGTGAEVEIALSSGGTGEGMIGFSS 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+D EFP Y++++P        V  +   +AV RV++++  R   V+L+   
Sbjct: 233 AGRRTTTRLLDPEFPKYRSLLPTEFSARADVATSAFVEAVKRVALVAE-RNTPVRLTFRG 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD- 351
            ++ +   + D  +A+E + V +    + I FN++YLL+ +  + SD       V R+  
Sbjct: 292 GEVVLEAGSGDEAQAVEVLPVDFEGDEITIAFNHQYLLDGLAVLDSD-------VARMQF 344

Query: 352 --SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  ++   GK    +   D +    Y++MP+R+
Sbjct: 345 TTPTKPAIITAGKPAGEEAASDYR----YLIMPIRL 376


>gi|158311870|ref|YP_001504378.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
 gi|158107275|gb|ABW09472.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
          Length = 386

 Score = 95.9 bits (237), Expect = 9e-18,   Method: Compositional matrix adjust.
 Identities = 93/399 (23%), Positives = 178/399 (44%), Gaps = 29/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           M+  VER +  + +    R +  + T  + V   +LL A    L++ A   E+   G + 
Sbjct: 1   MRFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGELD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  +L DI R L   A +    +   GT + ++ G++ F L   P  ++
Sbjct: 61  ATVTEEGRGLVNGKMLADITRSLP-AAPVDVHVD---GTRLVVACGNARFALPMLPVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      + +  +  +   + V +   A   ++    L G+   I+ + L L A  TD 
Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTLAA--TDR 173

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV  +           + +VP + + +  + LS     V V+L      E+      
Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGSGVEVAVALGTGPSGETLAGFAG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +   + RL++G FP Y+ ++P S+    ++    L +AV RV+++++ R   V+L+ + 
Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVAA-RTAPVQLTFTP 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF---- 348
           D L +        +A E++ V Y+   + + FN  YLL+ +  + SD V    + F    
Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPAYLLDALGALESDIV---RIGFASAE 349

Query: 349 -RLDSSNSSVFIRGKDKDSKNN-KDNKVNAFYVLMPMRI 385
               +++    + GK  D +    D +    Y+LMP+R+
Sbjct: 350 DAALAASKPAILTGKGGDDQTEIPDYR----YLLMPIRL 384


>gi|167759578|ref|ZP_02431705.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704]
 gi|167662805|gb|EDS06935.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704]
          Length = 402

 Score = 95.9 bits (237), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 89/384 (23%), Positives = 185/384 (48%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 34  MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEIEGQ 93

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D  +++   ++ L T +      + F +   P  EF  
Sbjct: 94  ITERGMIAIDARIFSEIVRKLPDN-EVTIETDSNLQTVITCEK--AKFDIAGKPGEEFSY 150

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S E++   LK ++ +T F++A  E    + G  F I +  L++  ++ DGHR
Sbjct: 151 LPIIEKEESIEISQFTLKEIIRQTIFSIADTESNKLMTGELFEIKDNILRV--ISLDGHR 208

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  Q+     +IVP K + E+ +ILS + +S V +S + + I    ++  +  
Sbjct: 209 ISIRKIELKDQVTD-KKLIVPGKTLIEVSKILSGEIESMVNISYTNNHIVFEFDNTIVVS 267

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+GE+     ++    + ++R+N   L   +DR +++     +   +    D+L    
Sbjct: 268 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMELK 327

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +G   E + +      + I FN K+L++ +  I      D+EV   L ++ +  FI
Sbjct: 328 IKSQVGSMNEEIYISKEGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCFI 382

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
                     KD++ N  Y+++P+
Sbjct: 383 ----------KDDEENYIYLILPV 396


>gi|116490128|ref|YP_809649.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1]
 gi|290889522|ref|ZP_06552612.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429]
 gi|116090853|gb|ABJ56007.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1]
 gi|290480720|gb|EFD89354.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429]
          Length = 374

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 169/351 (48%), Gaps = 30/351 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V+R+++   L    R I  K  IP+   + +  ++  + +  S  EI I   + A 
Sbjct: 1   MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60

Query: 61  VDV-------CGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQS 112
            D         G I  +A+   +I++ L  D  +IS       G+++ I  G S+F +  
Sbjct: 61  KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEIS-----TEGSQIAIVGGSSDFTVAG 115

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P     +   +  + SS L +++  T  A++ ++ R  L GI F I +  +K  
Sbjct: 116 QSADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK-- 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           AV+TD HRL+        +I K+ +     ++VP KA+ E+  +L + D+ + +    S+
Sbjct: 174 AVSTDSHRLS-------QRITKIGNDSQADVVVPSKALIELRALLENIDN-LNLQFDRSQ 225

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV- 286
           + +++   +   RL++G++P    +IP  +     ++   L  ++DR S+++      V 
Sbjct: 226 LLVDLGETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVA 285

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNI 336
           + S+S DKL ++    ++GK +E +++  +    + I FN  ++ + + +I
Sbjct: 286 EFSISQDKLVLSTAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSI 336


>gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Rv]
 gi|15839374|ref|NP_334411.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           CDC1551]
 gi|148659759|ref|YP_001281282.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra]
 gi|148821193|ref|YP_001285947.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis F11]
 gi|167969465|ref|ZP_02551742.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra]
 gi|215405986|ref|ZP_03418167.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           02_1987]
 gi|215413856|ref|ZP_03422521.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425188|ref|ZP_03423107.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T92]
 gi|215432907|ref|ZP_03430826.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054]
 gi|215448275|ref|ZP_03435027.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85]
 gi|218755718|ref|ZP_03534514.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis GM
           1503]
 gi|219555773|ref|ZP_03534849.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T17]
 gi|253796917|ref|YP_003029918.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 1435]
 gi|254233407|ref|ZP_04926733.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis C]
 gi|254366462|ref|ZP_04982506.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254548930|ref|ZP_05139377.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260198986|ref|ZP_05766477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T46]
 gi|260203139|ref|ZP_05770630.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis K85]
 gi|289441369|ref|ZP_06431113.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46]
 gi|289552252|ref|ZP_06441462.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 605]
 gi|289567884|ref|ZP_06448111.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T17]
 gi|289572578|ref|ZP_06452805.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           K85]
 gi|289747772|ref|ZP_06507150.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis
           02_1987]
 gi|289748464|ref|ZP_06507842.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T92]
 gi|289756061|ref|ZP_06515439.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054]
 gi|289760099|ref|ZP_06519477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85]
 gi|289764117|ref|ZP_06523495.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis GM 1503]
 gi|294995610|ref|ZP_06801301.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 210]
 gi|297632470|ref|ZP_06950250.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN
           4207]
 gi|297729439|ref|ZP_06958557.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN
           R506]
 gi|298527400|ref|ZP_07014809.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           94_M4241A]
 gi|306778290|ref|ZP_07416627.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu001]
 gi|306778820|ref|ZP_07417157.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu002]
 gi|306782608|ref|ZP_07420930.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu003]
 gi|306786976|ref|ZP_07425298.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu004]
 gi|306795596|ref|ZP_07433898.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu006]
 gi|306801571|ref|ZP_07438239.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu008]
 gi|306805780|ref|ZP_07442448.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu007]
 gi|306970177|ref|ZP_07482838.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu009]
 gi|306974409|ref|ZP_07487070.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu010]
 gi|307082117|ref|ZP_07491287.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu011]
 gi|307086728|ref|ZP_07495841.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu012]
 gi|313656768|ref|ZP_07813648.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN
           V2475]
 gi|3913519|sp|Q50790|DPO3B_MYCTU RecName: Full=DNA polymerase III subunit beta
 gi|3261513|emb|CAA16239.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13879043|gb|AAK44225.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|124603200|gb|EAY61475.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis C]
 gi|134151974|gb|EBA44019.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148503911|gb|ABQ71720.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis
           H37Ra]
 gi|148719720|gb|ABR04345.1| DNA polymerase III beta subunit dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis F11]
 gi|253318420|gb|ACT23023.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 1435]
 gi|289414288|gb|EFD11528.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46]
 gi|289436884|gb|EFD19377.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 605]
 gi|289537009|gb|EFD41587.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           K85]
 gi|289541637|gb|EFD45286.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T17]
 gi|289688300|gb|EFD55788.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis
           02_1987]
 gi|289689051|gb|EFD56480.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T92]
 gi|289696648|gb|EFD64077.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054]
 gi|289711623|gb|EFD75639.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289715663|gb|EFD79675.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85]
 gi|298497194|gb|EFI32488.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           94_M4241A]
 gi|308213440|gb|EFO72839.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu001]
 gi|308328157|gb|EFP17008.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu002]
 gi|308332531|gb|EFP21382.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu003]
 gi|308336274|gb|EFP25125.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu004]
 gi|308343892|gb|EFP32743.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu006]
 gi|308347676|gb|EFP36527.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu007]
 gi|308351594|gb|EFP40445.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu008]
 gi|308352301|gb|EFP41152.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu009]
 gi|308356304|gb|EFP45155.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu010]
 gi|308360191|gb|EFP49042.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu011]
 gi|308363878|gb|EFP52729.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu012]
 gi|323717341|gb|EGB26546.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905761|gb|EGE52694.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           W-148]
 gi|328456708|gb|AEB02131.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 4207]
          Length = 402

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 92/384 (23%), Positives = 169/384 (44%), Gaps = 35/384 (9%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +  +  +PV   VLL  +D  L I     E+     + A +   GS+ VS  LL DI R 
Sbjct: 33  LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138
           L +   +    E   G  V ++ G++ F L + P  ++P+  T  EE   +  L + +  
Sbjct: 93  LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197
             + +   A   ++    L GI   I  E + L   ATD  RLAV E+   A    +  +
Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250
           ++VP K + E  +      S V++SL        +  + ++      + RL+D EFP ++
Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
            ++P  +     ++   L +A+  V++++  R   V++  +   + ++    D+G+A E 
Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367
           + V Y   P+ I FN  YL + + ++ S     + V F   ++     +R   G D+   
Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376

Query: 368 NNKDN------KVNAFYVLMPMRI 385
               N        +  Y+LMP+R+
Sbjct: 377 GLNGNGPFPAVSTDYVYLLMPVRL 400


>gi|34541464|ref|NP_905943.1| DNA polymerase III subunit beta [Porphyromonas gingivalis W83]
 gi|34397781|gb|AAQ66842.1| DNA polymerase III, beta subunit [Porphyromonas gingivalis W83]
          Length = 377

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 22/353 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L    R+I  ++T+P+   VL +     L + A+    ++   +   
Sbjct: 1   MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAA----DMANRMSTE 56

Query: 61  VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSF 113
           + V       GS  V   +L + +++L D   ISF    E    E+  S+G  +F +Q  
Sbjct: 57  LTVNNVGGENGSFAVPERILLEPLKELPD-QPISFEINMETKAAEIAYSNGHYSFVVQDV 115

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
                 ++   E + S   A ++L  L   T FA + +E R  + G++    E+  KL  
Sbjct: 116 STYPVAASLSPEAIVSIVPAEALLSGL-SATLFATSQDERRPIMTGVYLDFFED--KLVF 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V +DG  L V + D   Q  +  +  +PRKA   +  +L   +  V ++   + +H+ + 
Sbjct: 173 VGSDGQIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           + ++  RL++G +PNY +VIP SN   ++V+   L     RVSI S+     +++  +  
Sbjct: 232 NYTLRARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPA 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMD----ICFNYKYLLEIIDNISSDEVV 342
            + ++ ++ D   A E       ECP D    I F       I+  + S+EV+
Sbjct: 292 GIRLSANDIDFSVAAEEH--VPAECPADINMRIGFKSDVFQTILQGMPSEEVI 342


>gi|288573678|ref|ZP_06392035.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569419|gb|EFC90976.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 386

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/394 (23%), Positives = 187/394 (47%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59
           MK+T++++  ++    A R+  +K+T+ V   +L  A DG + ++A+  +  +   +   
Sbjct: 1   MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFF--KENELGTEVNISHGDSNFYLQSFPESE 117
           ++D  G   +   ++ ++ +K    +  S F  +  E GT + +S G + +   ++P  +
Sbjct: 61  TIDEPGKAVLPIKVVGELFKK----SPTSIFTVEVAERGTGILLS-GRNRYRFTTYPADD 115

Query: 118 FPSTKEEEYVYSF-ELASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDLKLC-AV 174
           FP     E    F  LA   L  +++    A +  EE   YL      +   +   C  V
Sbjct: 116 FPPLPSPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGE---CHCV 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNI 232
           +TDG RL++++  +  +  +   +++P  +V E LRILS   +D  V VS+  +  +  +
Sbjct: 173 STDGRRLSLSKAYVDKENPEQ-DMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQL 231

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS- 291
           +SL  SVR +D  FPNY+ ++  +    L V+ +    A++RV ++     + V L LS 
Sbjct: 232 DSLEFSVRRVDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSP 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L ++   P++G+A E ++       + + FN  +L++ +     D+V          
Sbjct: 292 GGDLKLSGRAPEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKV---------- 341

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               S+   G++      + N+ +  Y+LMP+++
Sbjct: 342 ----SLSFNGQEGQMMMLRPNESDFLYMLMPIKL 371


>gi|300814758|ref|ZP_07095006.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511145|gb|EFK38397.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 365

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 163/343 (47%), Gaps = 10/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R D+ + +    R I  + T+ +   +L+++ D  + + A+  EI I     A 
Sbjct: 1   MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V+  L  +I+RKL +     F K       +NI  G+S F +       +P+
Sbjct: 61  VEEEGQIVVNGRLFGNIIRKLNNDD--IFIKVENFN--MNIKCGNSEFNISVQNAEGYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +    F L+   LK+ + +T FA++ +E R    G++    ++ +    VA DG R
Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDHINF--VALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ +++         S IVP ++  E+ +IL      + ++L  + I     +      
Sbjct: 175 MAIMKIN--KNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           LI G+F +Y+N++  S   +  V  +  + A +R S+++   R   V+++L+++++ +  
Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYID- 291

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
              ++G   E +N       + I FN +Y+LE I  + +D ++
Sbjct: 292 SKSEIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNII 334


>gi|326789141|ref|YP_004306962.1| DNA polymerase III subunit beta [Clostridium lentocellum DSM 5427]
 gi|326539905|gb|ADZ81764.1| DNA polymerase III, beta subunit [Clostridium lentocellum DSM 5427]
          Length = 368

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 82/364 (22%), Positives = 179/364 (49%), Gaps = 23/364 (6%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83
           K T+P+   +LL+A++  L +  +  E+ I   I A V   G I + + +  +I+R++  
Sbjct: 24  KTTMPILECILLKASNNKLTLVGNNLELGIESTIDADVINEGYIALESKIFSEIIRRMP- 82

Query: 84  GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVER 143
           G  +    ++   T + IS   S F +      +FP+  + E      +    LK ++ +
Sbjct: 83  GEVVEISTDDNFMTSI-ISE-KSKFQIAGQSGKDFPALPDVEKANICTVNQLALKEMIRQ 140

Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203
           T F++A +E R  L G    I   +L +  V+ DG+R++  ++ +  +  ++  +++P +
Sbjct: 141 TIFSVAQDETRPILTGEMLQIKNNNLNM--VSVDGYRISYRQLQLSNENGEI-EVVIPGR 197

Query: 204 AVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262
            + EI +IL+S++   V V   +  +  ++    +  RL++GEF  Y+ V     + ++ 
Sbjct: 198 TLSEINKILTSEEKEDVTVYFGDKHVLFDLGDSKVVSRLLEGEFLKYEQVFSPDYETKIL 257

Query: 263 VNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321
           V+  N   +++R +++S   +   +++ ++ +K+ +T  N ++G A E ++V      + 
Sbjct: 258 VDRKNFLMSIERAALISREGKKNPIRVEINGEKMIIT-SNAELGTAREELDVILEGKEIT 316

Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
           I FN KYL++ +  I      DD V     SS +   I+ ++ +            Y+++
Sbjct: 317 IAFNPKYLIDALKAID-----DDNVCIHFISSLTPCIIQPEEGEHYK---------YLIL 362

Query: 382 PMRI 385
           P+R+
Sbjct: 363 PIRV 366


>gi|325678528|ref|ZP_08158139.1| DNA polymerase III, beta subunit [Ruminococcus albus 8]
 gi|324109747|gb|EGC03952.1| DNA polymerase III, beta subunit [Ruminococcus albus 8]
          Length = 370

 Score = 95.5 bits (236), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 86/352 (24%), Positives = 171/352 (48%), Gaps = 20/352 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    ++ + + + +  + +  ++T+P    +     D LLE+     E+ I  AIP  
Sbjct: 1   MRFICSKTSLYDAIVNVSKAVSERSTLPSLEGIRFSLADSLLELTGYNLEMGIRTAIPVR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS  ++A L  ++++K+ D  ++           ++ S   + F + +   +++P 
Sbjct: 61  SDDKGSCIMNARLFAEMIKKM-DTEELLIDVSESYQVTISGSATKTTFNMFAATAADYPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E++      +A  VLKN++ +T FA+A  + +  L G  F I  E+  L  VA DG+R
Sbjct: 120 LPEKDSETQIPIAQPVLKNMIAQTKFAVAMTDDKPILKGELFDI--ENNTLTMVAIDGYR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +AV    +  +  +    +VP K++ EI  +LS ++D +V +  S   I  +I    +  
Sbjct: 178 MAVRYEPV--KFNEPIKFVVPSKSLSEIQSLLSDNEDDTVYIHPSRKHIIFDIGGYVVYS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKL--- 295
           RL++G+F  Y++ IP S++ ++ V+   L   ++R  ++ + R  + V+    +D +   
Sbjct: 236 RLLEGDFHPYKSAIPNSSNTDVVVDRKALISTLERAMLLINDRSPSPVRCYFDNDHVKLN 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           C+      +GK  + +        ++I F  KYLLE +      +V+DDE V
Sbjct: 296 CVAA----LGKISDEIAADVTGPVIEIGFKCKYLLEPL------KVIDDEKV 337


>gi|302535571|ref|ZP_07287913.1| DNA polymerase III, beta subunit [Streptomyces sp. C]
 gi|302444466|gb|EFL16282.1| DNA polymerase III, beta subunit [Streptomyces sp. C]
          Length = 376

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 173/395 (43%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDRVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGQGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   + D  +A+E ++       + I FN  +LL+ +  I S             
Sbjct: 289 QGVLILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDS-----PAAQLSFT 343

Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
           +S     + G+   D++ ++  K    Y++MP+R+
Sbjct: 344 TSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374


>gi|317486107|ref|ZP_07944954.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316922630|gb|EFV43869.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 382

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 101/402 (25%), Positives = 185/402 (46%), Gaps = 46/402 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  TV++ +I+E L  A  II  +        + ++A   +L I A+   IE TG  PA 
Sbjct: 1   MLFTVKKENIIEGLQKAAGIIPTRAGAAYLRSLWIKAEGEVLTIMATDANIEFTGTYPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           V   G + V+     D+VR+L  G ++    ++  GT V +  G   + L +   + F  
Sbjct: 61  VKEPGLVGVNGRNFVDLVRRLPAG-ELRIRLDDATGT-VILEQGRRTYKLPANDPTWFQS 118

Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKLCAVA 175
             P + E   V+S +      + +++R  F ++ +E    +  ++F  + E  +++C + 
Sbjct: 119 LAPFSSEGAVVWSGDF----FQEIIDRVFFCVSDDESSDAIACLYFKPVGEGHIEVCGL- 173

Query: 176 TDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--- 230
            +GH+ A+         A++P   +++ RK VGE+ + L   +  ++V+L++ R+ +   
Sbjct: 174 -NGHQFALTRFTHDDLSARLPEDGVLIQRKYVGELRKWLGGDE--IEVNLTDKRLFVRSG 230

Query: 231 -NIESLSMSVRLIDGEFPNYQNVIP--CSNDKEL----RVNCTNLRQAVDRVSIMSSVRI 283
              E+LS+        +P+Y   +    S D  L    R +C +   A+DR+SI ++   
Sbjct: 231 DGHETLSLPRAGY--AYPDYSPFMTRLASPDVSLLKLSRKDCLD---ALDRISIFNTESD 285

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +     LSS +  ++    D G A ES+ V YN     I F  K L+EI+ +  S     
Sbjct: 286 RCTYFELSSAEAMLSAQGQDTGSANESLEVSYNGSIGRIAFPTKNLMEILTHYQS----- 340

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            E+ F L  +     I G +     + D  V    ++MPM+I
Sbjct: 341 GELTFTLTGAEGPCGINGTE-----DPDYTV----LIMPMKI 373


>gi|302388601|ref|YP_003824422.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302199229|gb|ADL06799.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 370

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 79/347 (22%), Positives = 162/347 (46%), Gaps = 18/347 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +L  +  A R I  K T+P+   +   A    LE+ ++  E+ I   +PA 
Sbjct: 1   MQFLIEKDQLLSGVSVAERFIASKTTMPILSGIKFSAYGSTLELSSTDLEMGIECRLPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G   +S  +  DI RKL  G Q+ F ++     ++ +  GD    +      +FP 
Sbjct: 61  IMEEGDAVISTKVFSDIARKLPQG-QVLFRRQE---GQITVEAGDFRLNMPVLEAGDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDGH 179
               E     +      KN+V++T FA A + I R  L G    +   + +   VA DG 
Sbjct: 117 VVPPETNPILKFPKETFKNMVKQTIFARAEDSIARPVLTGEL--LEARNGRFHVVALDGF 174

Query: 180 RLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLS 236
           R+A        + A++P  S++VP +A+ E+ R LS + + + ++    +R+    E+L 
Sbjct: 175 RIAWR-----WEEAEVPDFSVVVPGRALLELTRALSDTGEDTFEIHTGRNRVVFCTENLV 229

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDK 294
           M+ R+++G+F +Y+ V+       +      L  +++R  I++    +   VK  + + +
Sbjct: 230 MATRVLEGKFIDYEQVVKVDPKITVVAKTDALLSSIERAFIVAREGSKNNLVKFRIGNGR 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + ++ +  +MG   E +    +   + + FN ++ +E + ++   E+
Sbjct: 290 MEVSSET-EMGSVYEKVECETSGDDLVVAFNARFFIEALRSVEQPEI 335


>gi|332982992|ref|YP_004464433.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON]
 gi|332700670|gb|AEE97611.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON]
          Length = 374

 Score = 95.1 bits (235), Expect = 1e-17,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 182/393 (46%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + +E+ ++  ++  A + +  ++ +PV   V L A   +L   A+     I  +  A 
Sbjct: 1   MYVEIEKDNLETVVATAGKALATRSVLPVLEGVKLSATGNMLTADATNTVTHIAVSKAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I  +  LL DIV  L +G  ++   +N+    V I+ G S   L + P  +FPS
Sbjct: 61  VTETGAIVTNGKLLIDIVSSLPEG-PVTIKTDNQ--GNVVITAGLSEITLATLPAKDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTH-FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               E    F + + VLK++++ T  FA   +  +  L G+   +   +L + A+  DG+
Sbjct: 118 PPAVETGAEFSIPADVLKSMIKGTSLFAAPDQSAQEILTGVAMELEGTNLVMTAI--DGY 175

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLS 236
           R+A     +V   A    + I+P K++  + +IL   +  VK+SL    I  N     + 
Sbjct: 176 RIA-QRCSVVTNTAGYNGTAIIPAKSLATLAKILPVGNGDVKISLGNKVIRFNTADGGII 234

Query: 237 MSVRLIDGEFPNYQNVI-PCSNDKELRVN--CTNLRQAVDR-VSIMSSVRIQAVKLSLSS 292
            +  L++G++ +Y+ +I     D++ R+     ++R AV R V++  +     +KL +++
Sbjct: 235 FTAVLLNGKYIDYKGLIDEALEDRKSRMTLFTEDMRSAVGRDVTVAQAGNSTLLKLEVTN 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L +   + D+ K  + + V        +  N KYL +++  I      DD++V    S
Sbjct: 295 NYLLLNT-SVDIAKVSDRIAVDCEGEDAKVGLNGKYLSDVLSVIG-----DDQIVLSFGS 348

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   + ++  ++             Y ++P+R+
Sbjct: 349 SADPILVQPVEEQEY---------LYYILPIRL 372


>gi|119025020|ref|YP_908865.1| DNA polymerase III subunit beta [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764604|dbj|BAF38783.1| DNA polymerase III, b subunit DnaN [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 374

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 177/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 1   MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L   A  ++   +  G+ + I+ G S F +Q  PESE+P 
Sbjct: 61  VDEAGSVLVLGKLLADITKSLP--AAKTYLSTD--GSTMTITSGKSTFTMQLMPESEYPD 116

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    S      V +   A++ EE R  L GI      +  K+   +TD
Sbjct: 117 LP----VVPTKLGQVDSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL---SESRIHLNIE 233
             RLA +      + A + +  + R   G +LR ++ S D    V++   +++   L  E
Sbjct: 171 RFRLARSSFTWTPEDATISTTALVR---GSLLRDMARSLDEHQNVTIDFDADNPSLLGFE 227

Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +     + +LIDGEFP    +          +N   L  A+ RVS+++  R   +++  S
Sbjct: 228 NAGRVSTSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVAE-RNAPIRMVFS 286

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++    D  +A E +++  +   + + FN  YL++ +  IS     +  V  ++ 
Sbjct: 287 GQELTLSAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMT 341

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++   V   G+    + + D  ++  Y+L+PMR
Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMR 371


>gi|307945020|ref|ZP_07660356.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
 gi|307770893|gb|EFO30118.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
          Length = 399

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 70/266 (26%), Positives = 136/266 (51%), Gaps = 32/266 (12%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F + + VL++   +T  +++TEE+RYYL G++ H    + K  A +TDGHRL + E D+ 
Sbjct: 154 FLIPTHVLRDAFRKTLPSVSTEEVRYYLRGVYLH--AYNGKFRAASTDGHRLTIFEDDLP 211

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSK----DSSVKVSLSESRIHLNIESLS-MSVRLIDG 244
             +  +P II+P K V E++R+LS K     S VKV + E+ +         ++V+ IDG
Sbjct: 212 PGVTDIPPIIIPTKGVQEVVRMLSRKGIDASSQVKVIVDEAGVFFQFGDYELLAVKAIDG 271

Query: 245 EFPNYQNVIPCSNDKELRVNCTNL--RQAVDRVSIMSSVR--IQAVKLSLSSDKLCMTVD 300
            FP+YQ +IP      + VN  +   ++  D +  + S++     V  S     + ++V 
Sbjct: 272 TFPDYQRLIPA-----MPVNFVSFEAQKMEDALKALLSIKPEFNRVLCSFEESGIHLSVS 326

Query: 301 NPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             +  K+  S+        P+ I FN +++ +++      ++++      +D +N  V +
Sbjct: 327 TEEGAKSRTSLKANLEGIDPIQIKFNGQFISDLM------KLIEGRARVCIDHNNQPVVL 380

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  ++  D+++   Y++MP++I
Sbjct: 381 -------QDVSDDRMT--YLVMPLKI 397


>gi|241888986|ref|ZP_04776290.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379]
 gi|241864235|gb|EER68613.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379]
          Length = 379

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/324 (23%), Positives = 159/324 (49%), Gaps = 18/324 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV---------SCHVLLQANDGLLEIKASGPEI 51
           MK T+ +S+ L+ L H  R+I   +   +            ++L+A+D L+ ++ S    
Sbjct: 1   MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60

Query: 52  EITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
           E    +  +++  G + + +    +I+RK    A     +   +G  + +  G S F ++
Sbjct: 61  EDDKEV-ITIEEEGQVVLPSRNFIEIIRK----APTDLIEIETVGNNILVKSGKSEFNVK 115

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            +  +++P         S +L ++V  ++++ T F  A  + R  L G+ F ++ +   L
Sbjct: 116 GYDANDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNK--IL 173

Query: 172 CAVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
            A ATD +RL+  +V +  + + K  ++I+PRKA+    R++ +    V++    +RI L
Sbjct: 174 TATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVL 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
             +++  +V LI G +PN   +IP   +     N      AVDRV++MS   +   +KL 
Sbjct: 234 YYQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLV 293

Query: 290 LSSDKLCMTVDNPDMGKAIESMNV 313
           ++ + L ++  + ++G A+E + V
Sbjct: 294 VTDNLLEVSSQSKELGSAVEELKV 317


>gi|154486347|ref|ZP_02027754.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis
           L2-32]
 gi|154084210|gb|EDN83255.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis
           L2-32]
          Length = 374

 Score = 95.1 bits (235), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/393 (24%), Positives = 177/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 1   MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L   A  ++   +  G+ + I+ G S F +Q  PESE+P 
Sbjct: 61  VDEAGSVLVLGKLLADITKSLP--AAKTYLSTD--GSTMTITSGKSTFTMQLMPESEYPD 116

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    S      V +   A++ EE R  L GI      +  K+   +TD
Sbjct: 117 LP----VVPTKLGQVDSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL---SESRIHLNIE 233
             RLA +      + A + +  + R   G +LR ++ S D    V++   +++   L  E
Sbjct: 171 RFRLARSSFTWTPEDATISTTALIR---GSLLRDMARSLDEHQNVTIDFDADNPSLLGFE 227

Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +     + +LIDGEFP    +          +N   L  A+ RVS+++  R   +++  S
Sbjct: 228 NAGRVSTSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVAE-RNAPIRMVFS 286

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++    D  +A E +++  +   + + FN  YL++ +  IS     +  V  ++ 
Sbjct: 287 GQELTLSAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMT 341

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++   V   G+    + + D  ++  Y+L+PMR
Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMR 371


>gi|320103682|ref|YP_004179273.1| DNA polymerase III subunit beta [Isosphaera pallida ATCC 43644]
 gi|319750964|gb|ADV62724.1| DNA polymerase III, beta subunit [Isosphaera pallida ATCC 43644]
          Length = 378

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 72/256 (28%), Positives = 128/256 (50%), Gaps = 19/256 (7%)

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           +A++ LK L++RT FA   E  R+ L G+ F  + E   L  V TDG RLA  +V    +
Sbjct: 130 VAAADLKKLIKRTIFATELESTRFALGGVLFEFSPEGNLLTGVGTDGRRLAHTQVPAEPE 189

Query: 192 IAKMPSI---IVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSVRLIDGEFP 247
               P     ++P KA+  + R L   D  V ++  S + + +  +   +  RL++G FP
Sbjct: 190 GGVTPPAGQPVIPVKALKLLDRNLDDDDPPVHIAFPSPNAVVIRTDRSVIWSRLVEGRFP 249

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
            Y++V P S +  + +    LR  V++ +I++S   + V  + +  KL +     D G++
Sbjct: 250 RYRDVFPTSCEARIPIEAGLLRSRVEQAAIVTSDESRGVDFTFADGKLTLAARAADSGES 309

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
              M + Y+   ++I F+  YLLE++  +  +E +  E++   D  N++V IR  D+ S 
Sbjct: 310 QVEMPIRYSGATIEITFDPTYLLEMLKVLPEEEEIVIELI---DDKNAAV-IRHADRYS- 364

Query: 368 NNKDNKVNAFYVLMPM 383
                     Y+LMP+
Sbjct: 365 ----------YILMPL 370


>gi|9845532|gb|AAG00841.1| DnaN [Mycobacterium tuberculosis]
          Length = 402

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 169/384 (44%), Gaps = 35/384 (9%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +  +  +PV   VLL  +D  L I     E+     + A +   G++ VS  LL DI R 
Sbjct: 33  LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGTVLVSGRLLSDITRA 92

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138
           L +   +    E   G  V ++ G++ F L + P  ++P+  T  EE   +  L + +  
Sbjct: 93  LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197
             + +   A   ++    L GI   I  E + L   ATD  RLAV E+   A    +  +
Sbjct: 146 EAISQVAIAAGRDDTLPMLTGIRVEILGETVVLA--ATDRFRLAVRELKWSASSPDIEAA 203

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250
           ++VP K + E  +      S V++SL        +  + ++      + RL+D EFP ++
Sbjct: 204 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 262

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
            ++P  +     ++   L +A+  V++++  R   V++  +   + ++    D+G+A E 
Sbjct: 263 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 321

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367
           + V Y   P+ I FN  YL + + ++ S     + V F   ++     +R   G D+   
Sbjct: 322 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 376

Query: 368 NNKDN------KVNAFYVLMPMRI 385
               N        +  Y+LMP+R+
Sbjct: 377 GLNGNGPFPAVSTDYVYLLMPVRL 400


>gi|300742655|ref|ZP_07072676.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567]
 gi|300381840|gb|EFJ78402.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567]
          Length = 375

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 180/389 (46%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L++A  G + I +   EI     I AS
Sbjct: 1   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAKSGEVSISSFDHEISAKQTIEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+  V   +L +I R L + A + F   +   + + ++   + F L   P +++P 
Sbjct: 61  VEQEGTCLVPGKMLAEICRSLPN-ADVEFVAND---STIFMTCRSAKFQLAGMPVADYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V +   A++ +E    L GI   I+   + L  +ATD +R
Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237
           LA+ E+    +  ++  ++++  K + E+ R LSS    + ++L E+   I  +  S   
Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296
           +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  + D ++ 
Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVAE-RNTPLRLQFTEDGQVS 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A ESM    +   + + +N  YL E +    +     D V F    +   
Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G+D+      +  ++  Y++ P+R+
Sbjct: 347 AVLSGQDEPL---SEEDLSYRYLVQPIRL 372


>gi|325961452|ref|YP_004239358.1| DNA polymerase III subunit beta [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323467539|gb|ADX71224.1| DNA polymerase III, beta subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 374

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/392 (25%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R  + E +    R +  +  +PV   +LL+A  G + + +   E      I A 
Sbjct: 1   MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIGAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I VS  LL DI R L   A +    +   G +V ++   S+F+L + PE+E+P 
Sbjct: 61  IRDEGTILVSGRLLADICRSLP-SAPVDVETD---GNKVTLTCRRSSFHLATMPEAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 + S  +        V +   A + ++    L G+   I E+DL +  +ATD +R
Sbjct: 117 LPALPAI-SGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173

Query: 181 LAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLS 236
           LA+ EV    +   I+   S +V  K + E+ + L  S D ++ +S  +SR+ +  ES  
Sbjct: 174 LAMREVPWKPVTPGIST--SALVKAKTLNEVAKTLGNSGDINLALSDDDSRL-IGFESGG 230

Query: 237 MSVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +    L+DG++P  +++ P S      V    L +AV RVS+++  R   V+L+ +  +
Sbjct: 231 RTTTSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTQGQ 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     +  +A E +    +   + + FN  YL+E +  I +       V F   ++ 
Sbjct: 290 LNLDAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIET-----KFVRFSFTTAP 344

Query: 355 SSVFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385
               I  + D D ++  D +    Y++MP+R+
Sbjct: 345 KPAMITAQADADGEDQDDYR----YLVMPVRL 372


>gi|312134084|ref|YP_004001422.1| DNA polymerase III subunit beta [Caldicellulosiruptor owensensis
           OL]
 gi|311774135|gb|ADQ03622.1| DNA polymerase III, beta subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 368

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/360 (25%), Positives = 168/360 (46%), Gaps = 33/360 (9%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           +L++A D ++    +  ++++     A +   G+  V A L  DIV+KL DG  +   +E
Sbjct: 33  ILIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPDG-DVEVIRE 90

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           +    EV I      F L +    +FP   ++      E  +S   + ++R  FA + +E
Sbjct: 91  D---NEVRIRSQKIEFRLPTLDPLDFPKMDKKPAESFCEFVASEFVDSIDRVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   E+D  +  V  DGHRLA+ ++  V ++    S IVP   + +I +I+
Sbjct: 148 TRPTFTGVLFERQEDDF-VNLVGMDGHRLAICKIKPV-EVEGSFSKIVPADNLDDITKII 205

Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             +D+  V+VS  E++    I S ++ V LI G+F +Y++ IP      + ++   L   
Sbjct: 206 DIEDAEKVRVSFYENQATFEIGSTTVIVTLIAGKFFDYKSAIPTEYSTRISISTDVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSS---DKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
           ++R SI+S      IQAV    +        M+ D    G+  E +        + I FN
Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMIFKVYSMSAD----GRYEEDVLCSVEGKDIKIGFN 321

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            KY L+++      +V+D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 322 VKYFLDVL------KVLDGEI---------NLFITSQTSPSIVQKPDDENYIYLVLPIKM 366


>gi|220910785|ref|YP_002486094.1| DNA polymerase III subunit beta [Arthrobacter chlorophenolicus A6]
 gi|219857663|gb|ACL38005.1| DNA polymerase III, beta subunit [Arthrobacter chlorophenolicus A6]
          Length = 374

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 100/390 (25%), Positives = 180/390 (46%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R  + E +    R +  +  +PV   +LL+A  G + + +   E      I A 
Sbjct: 1   MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEITAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I VS  LL DI R L   A +    +   G +V ++   S+F+L + PE+E+P 
Sbjct: 61  IRDEGTILVSGRLLADICRSLP-SAPVDVETD---GNKVTLTCRRSSFHLATMPEAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 + S  +        V +   A + ++    L G+   I E+DL +  +ATD +R
Sbjct: 117 LPALPAI-SGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEI-EDDL-ITLLATDRYR 173

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
           LA+ EV        +  S +V  K + E+ + L  S D S+ +S  ++R+ +  ES   +
Sbjct: 174 LAMREVPWKPVTPGVSTSALVKAKTLNEVAKTLGNSGDISLALSDDDTRL-IGFESGGRT 232

Query: 239 VR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
               L+DG++P  +++ P S      V    L +AV RVS+++  R   V+L+ ++  L 
Sbjct: 233 TTSLLVDGDYPKIRSLFPESTPIHATVQTQELVEAVRRVSLVAE-RNTPVRLAFTAGLLN 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     +  +A E +    +   + + FN  YL+E +  I +       V F   S+   
Sbjct: 292 LDAGTGEDAQASEELEAQLSGDDITVAFNPHYLVEGLSVIET-----KFVRFSFTSAPKP 346

Query: 357 VFIRGK-DKDSKNNKDNKVNAFYVLMPMRI 385
             I  + D D ++  D +    Y++MP+R+
Sbjct: 347 AMITAQADADGEDQDDYR----YLVMPVRL 372


>gi|282881769|ref|ZP_06290427.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298379|gb|EFA90817.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B]
          Length = 365

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 81/343 (23%), Positives = 163/343 (47%), Gaps = 10/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R D+ + +    R I  + T+ +   +L+++ D  + + A+  EI I     A 
Sbjct: 1   MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V+  L  +I+RKL +     F K       +NI  G+S F +       +P+
Sbjct: 61  VEEEGQIVVNGRLFGNIIRKLNNDD--IFIKVENFN--MNIKCGNSEFNISVQNAEGYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +    F L+   LK+ + +T FA++ +E R    G++    ++ +    VA DG R
Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQDYINF--VALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ +++         S IVP ++  E+ +IL      + ++L  + I     +      
Sbjct: 175 MAIMKIN--KNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           LI G+F +Y+N++  S   +  V  +  + A +R S+++   R   V+++L+++++ +  
Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYID- 291

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
              ++G   E +N       + I FN +Y+LE I  + +D ++
Sbjct: 292 SKSEIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMETDNII 334


>gi|242281239|ref|YP_002993368.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM
           2638]
 gi|242124133|gb|ACS81829.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM
           2638]
          Length = 387

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 182/413 (44%), Gaps = 65/413 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R +++E L  +  II  K        + L+++ G L I ++   +E  G  PA 
Sbjct: 1   MYLKVNRDEVIEGLQKSASIIPAKTGAAYLRTIWLKSDGGNLRIMSTDSNLEFCGTYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           +   G   V     YD+VRKL  G      K +  G+ + +  G   +        + Q 
Sbjct: 61  IMEEGLAGVQGRAFYDLVRKLPSGELT--IKNDADGSSILVEQGSRKYKLPVNDPTWFQK 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-----------NGIF 161
           F  S FPS   E  V+    +   L  L+ER  F ++ E+    +           NG F
Sbjct: 119 F--SSFPS---EGAVF---WSGDFLLELIERIAFCISDEDSMEAIACMNIVPAADENGKF 170

Query: 162 FHINEEDLKLCAVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219
                  +++C +  +GH+ A  +   D +  I     I++ +K + E+ + L+  +  +
Sbjct: 171 -------VEVCGL--NGHQFARLKFINDDIHSILPEEGILIQKKYLVELKKWLT--EDEI 219

Query: 220 KVSLSESRIHLNI----ESLSMSVRLIDGEFPNYQNVIPCSNDKE---LRVNCTNLRQAV 272
           ++SLSE R+        E+ S+ +     ++PNY+N +   ND +   ++V  + L  A+
Sbjct: 220 ELSLSEKRLFFKTADGKETFSLPLSYY--QYPNYKNFLSKLNDDDVSRMKVEKSELSMAL 277

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           DR+SI ++   +      +  +L +     ++G A ESM + ++     I F  K L+EI
Sbjct: 278 DRISIFNTDSNRCASFLFNPGELVLFSQGQEVGTATESMEIEFSGEMERIAFPTKNLIEI 337

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  S     D++ F L  + +   + G D       DN+     ++MPM++
Sbjct: 338 LGHFQS-----DKINFTLTGAEAPCGVTGGD-------DNEY--LVIVMPMKV 376


>gi|188995650|ref|YP_001929902.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595330|dbj|BAG34305.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 377

 Score = 94.7 bits (234), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 88/353 (24%), Positives = 161/353 (45%), Gaps = 22/353 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L    R+I  ++T+P+   VL +     L + A+    ++   +   
Sbjct: 1   MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAA----DMANRMSTE 56

Query: 61  VDVC------GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSF 113
           + V       GS  V   +L + +++L D   ISF    E    E+  S+G  +F +Q  
Sbjct: 57  LTVNNVGGENGSFAVPERILLEPLKELPD-QPISFEINMETKAAEIAYSNGHYSFVVQDA 115

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
                 ++   E + S   A ++L  L   T FA + +E R  + G++    E+  KL  
Sbjct: 116 STYPVAASLSPEAIVSVIPAEALLSGL-SATLFATSQDERRPIMTGVYLDFFED--KLVF 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V +DG  L V + D   Q  +  +  +PRKA   +  +L   +  V ++   + +H+ + 
Sbjct: 173 VGSDGQIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           + ++  RL++G +PNY +VIP SN   ++V+   L     RVSI S+     +++  +  
Sbjct: 232 NYTLRARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPA 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMD----ICFNYKYLLEIIDNISSDEVV 342
            + ++ ++ D   A E       ECP D    I F       I+  + S+EV+
Sbjct: 292 GIRLSANDIDFSVAAEEH--VPAECPADINMRIGFKSDVFQTILQGMPSEEVI 342


>gi|311112570|ref|YP_003983792.1| DNA-directed DNA polymerase III subunit beta [Rothia dentocariosa
           ATCC 17931]
 gi|310944064|gb|ADP40358.1| DNA-directed DNA polymerase III beta subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 375

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 180/389 (46%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L++A  G + I +   EI     I AS
Sbjct: 1   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAESGEVSISSFDHEISAKQTIEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+  V   +L +I R L + A + F   +   + + ++   + F L   P +++P 
Sbjct: 61  VEQEGTCLVPGKMLAEICRSLPN-ADVEFVAND---STIFMTCRSAKFQLAGMPVADYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V +   A++ +E    L GI   I+   + L  +ATD +R
Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237
           LA+ E+    +  ++  ++++  K + E+ R LSS    + ++L E+   I  +  S   
Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296
           +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  + D ++ 
Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVAE-RNTPLRLQFTEDGQVS 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A ESM    +   + + +N  YL E +    +     D V F    +   
Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G+D+      +  ++  Y++ P+R+
Sbjct: 347 AVLSGQDEPL---SEEDLSYRYLVQPIRL 372


>gi|258646403|ref|ZP_05733872.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470]
 gi|260403804|gb|EEW97351.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470]
          Length = 369

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 77/344 (22%), Positives = 152/344 (44%), Gaps = 6/344 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T +  D+   L    R  + K T   +    + A DG +E +A+   I I     A 
Sbjct: 1   MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIGIRTFCEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ +S+  L   ++ +  G  +   K+ E  + V    G  N +  +   +EFP 
Sbjct: 61  VEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGE--STVFFKAGQYNSHFPTRDTAEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E ++ +   +       +V    FA +T+       GI   INE    +   AT+ HR
Sbjct: 119 VTEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINENVFTMA--ATNSHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           LA  E+ +        + IV    + +++R+L   +D  +++S +   +  +        
Sbjct: 177 LAAREISLEEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
            LI+G +P+Y+ V P S D    ++  +  +AV  VS +S  +  + +     +  L   
Sbjct: 237 NLINGVYPDYKRVFPSSFDLNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAF 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++PD+G++  S+    +   + I FN  Y+ +I+ +   ++++
Sbjct: 297 EEDPDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKII 340


>gi|167957124|ref|ZP_02544198.1| DNA polymerase III, beta subunit [candidate division TM7
           single-cell isolate TM7c]
          Length = 366

 Score = 94.4 bits (233), Expect = 2e-17,   Method: Compositional matrix adjust.
 Identities = 86/345 (24%), Positives = 159/345 (46%), Gaps = 14/345 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++V + +  + L +A RI   +  +P+  ++LL+ +   L + A   E+     I   
Sbjct: 1   MELSVLQENFTKALNNASRIATSRTQLPILNNILLRTDGNRLLVAAMNMEVATMHYIGTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A L+ + V  L    +I    E   G  + I  G  +  +      +FP 
Sbjct: 61  IIKPGSITVPARLITEFVSSLPK-EKIDLKVE---GEHLIIKAGKYSSVINGIAADDFPE 116

Query: 121 TK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               +E     +E+A    K  V +T  A + +  R  L G++++  E +L L    TDG
Sbjct: 117 LPAIDENTAIQYEIAPHDFKQAVNQTIIAASNDAARPILTGVYWYSFEGNLYLAG--TDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA  E  +V+  +++ +II P  ++ E LR+++   S V +   ES++   I+   ++
Sbjct: 175 YRLA--ERCLVSTESEVAAII-PTNSLQEALRVINDNTSQVTILFDESQVRFKIDDTEIT 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LC 296
            +LIDG FP Y+ +IP SN+  + +   +  +      + S     +V ++  S+K  L 
Sbjct: 232 SQLIDGNFPPYRQLIPVSNETNVIIKKDDFMRITKIAGLFSRDSGGSVTITADSEKGELS 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +     ++G+          E    I  N +Y+ E +  I  D V
Sbjct: 292 LHSVASELGENTSEATAKI-EGGGTITLNSRYISEALSVIDGDTV 335


>gi|317054733|ref|YP_004103200.1| DNA polymerase III subunit beta [Ruminococcus albus 7]
 gi|315447002|gb|ADU20566.1| DNA polymerase III, beta subunit [Ruminococcus albus 7]
          Length = 368

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 88/358 (24%), Positives = 171/358 (47%), Gaps = 21/358 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +  + + + +  + +  ++T+P    +     D LLE+     E+ I   I   
Sbjct: 1   MKFICTKQTLYDAIVNVSKAVSERSTLPSLEGIKFSLADSLLELTGYNLEMGIRTVISVR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS  ++A L  ++++K+     +    ++    +V IS G + F + +    ++P 
Sbjct: 61  SDDKGSCIINARLFSEMIKKMSADEVLIDISDS---YQVTISGGVTKFNMFAASAEDYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E++      ++  VLKN++ +T FA+A  E +  L G  F I    L L  VA DG+R
Sbjct: 118 LPEKDSETQIPISQPVLKNMIAQTKFAVALTEDKPILKGELFDIENNTLTL--VAIDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +AV    +  + A+    +VP K++ EI  +LS ++D +V +  S   I  +I    +  
Sbjct: 176 MAVRYEPV--KYAEQIKFVVPSKSLSEIQGLLSDNEDDTVYIHPSRKHIIFDIGGYMVYS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKL--- 295
           RL++G+F  Y++ IP S++ ++ V+   L   ++R  ++ + R  + V+    +D +   
Sbjct: 234 RLLEGDFHPYKSAIPNSSNTDVVVDRKELISTLERAMLLINDRSPSPVRCFFENDHVKIN 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           C T     +GK  + ++       ++I F  KYLL+ +  I      D++V  R+  S
Sbjct: 294 CTTA----LGKISDEISADIAGPVIEIGFKCKYLLDPLKVIE-----DEKVKLRMGGS 342


>gi|297193295|ref|ZP_06910693.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197718390|gb|EDY62298.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 376

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG +   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGAVSFSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           VD  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VDEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374


>gi|229156276|ref|ZP_04284372.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342]
 gi|228627151|gb|EEK83882.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342]
          Length = 316

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 76/283 (26%), Positives = 137/283 (48%), Gaps = 12/283 (4%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            G+I V A    +I++K+   + I    +NE    + I   +    L  FP +EFP+  +
Sbjct: 12  AGTIVVPAKYFIEIIKKMP--SDIVIKSKNE--QTITIQSEEITLNLNGFPANEFPNVPQ 67

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +     ++ +  L +  ++T FA+A  E R  L G+  HI  +  KL   ATD HRLA+
Sbjct: 68  IDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGV--HIELDHNKLICAATDSHRLAI 125

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            E  I   +    + IVP   + E+L++++S    V + LSES I     + ++  RLI+
Sbjct: 126 RETLISTNVKA--NCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIE 183

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNP 302
           G++PN  ++IP      + ++   + Q VDR S+++S      V L + ++       N 
Sbjct: 184 GKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIKVSSNA 243

Query: 303 -DMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +GK  E+  +     E   +I F+ +++L+ +  I  + V 
Sbjct: 244 SQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETVT 286


>gi|330719907|gb|EGG98379.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047]
          Length = 168

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 59/180 (32%), Positives = 109/180 (60%), Gaps = 14/180 (7%)

Query: 207 EILRILSS-KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
           E+ R+ S   + SVKV +S + I    ++ + + +L+DG+FP+YQ V+P ++DKE+ V  
Sbjct: 2   ELNRLFSGDSEGSVKVVMSSNHIRAVTDNFTFTSKLVDGKFPDYQQVVPKNSDKEMLVER 61

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
             L+Q ++R++I+S+ + + V+L + +D L +  +NP+  +A ES++V Y+   ++I FN
Sbjct: 62  ELLKQVLNRIAILSNEKYRGVRLIVDNDLLQVFANNPEQEEAEESLSVKYDSESLEIGFN 121

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             YLL+++   SS  V   +V F    +NSS+ I    +        + ++ YV+MPMR+
Sbjct: 122 VSYLLDVLSVTSSTNV---KVSFA--DANSSILIEEIVE--------RPDSLYVVMPMRL 168


>gi|153854254|ref|ZP_01995553.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814]
 gi|149753029|gb|EDM62960.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814]
          Length = 452

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 94/385 (24%), Positives = 187/385 (48%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 84  MKITCSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEISGD 143

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D  +++    + L T +      + F +   P  EF  
Sbjct: 144 IIDRGMIAIDAKIFSEIVRKLPDN-EVTIETLDNLQTVITCEK--AKFDIAGKPGDEFAY 200

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S E++   LK ++ +T F+++  E    + G  F I++  LK+  V+ DGHR
Sbjct: 201 LPIIEKEDSIEVSQFTLKEVIRQTIFSISDSESNKLMTGELFDISDNILKV--VSLDGHR 258

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV- 239
           +++ +V +   +A    ++VP K + EI +ILS +  +V VS+S ++ H+  E  +  V 
Sbjct: 259 ISIRKVPLKKSVADR-KLVVPGKTLIEISKILSGEAENV-VSISYTKNHIVFEFDNTIVV 316

Query: 240 -RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+GE+     ++    + ++R+N   L   +DR +++     +   +    D+L   
Sbjct: 317 SRLIEGEYFRIDQMLSNDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMEL 376

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +G   E + +      + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 377 KIKSQIGSMNEEIMITKEGKDLLIGFNPKFLIDALRVID-----DEEVTIYLMNAKAPCF 431

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ +  Y+++P+
Sbjct: 432 I----------KDDEESYIYLILPV 446


>gi|313112576|ref|ZP_07798237.1| DNA polymerase III beta subunit protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310625098|gb|EFQ08392.1| DNA polymerase III beta subunit protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 246

 Score = 94.4 bits (233), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 71/237 (29%), Positives = 119/237 (50%), Gaps = 10/237 (4%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDI 77
            + +  ++ IPV   +LL+A    L +     E+ I   I A+V   G + ++A LL  +
Sbjct: 18  SKAVTMRSAIPVLEGILLKAEGFQLNLTGYDLEMGIVTTIEANVKEAGEVVLNAKLLSSM 77

Query: 78  VRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           + ++  G Q+S    EN    +  I  G   F +QS P ++FP         +  + + V
Sbjct: 78  ISRMPAG-QVSILSAEN---GKTTIQSGVVQFEIQSMPANDFPELPNTGAEETLTIKTGV 133

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK++++RT +A++ +E +    G  F I  +  KL  VA DG+RLA+ E  + A   K  
Sbjct: 134 LKDMIDRTLYAVSQDEKKPAHTGELFEILPD--KLTVVALDGYRLAIVERPVTA--VKDI 189

Query: 197 SIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
            IIVP K + E+  +L + D   V +S +   +       ++  RLI+GEF NY+NV
Sbjct: 190 RIIVPSKTMTEVAHLLPNDDEEPVHISANRRYVVFMAGGYTIMSRLIEGEFLNYRNV 246


>gi|330470834|ref|YP_004408577.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
 gi|328813805|gb|AEB47977.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
          Length = 373

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 92/393 (23%), Positives = 184/393 (46%), Gaps = 34/393 (8%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV--D 62
           +ER  + E +    + +  + ++PV   V+L+  DG L++  SG + E++  +   V  D
Sbjct: 1   MERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGTLQV--SGFDYEVSSQVTVEVQGD 58

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G+  VS  LL +I + L  G  +       +G  + +  G + F L + P  ++P+  
Sbjct: 59  ADGAALVSGRLLAEITKALP-GKPVDI---AAVGAHLELVCGSARFTLPTMPVEDYPTLP 114

Query: 123 E-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           E  E   + + A+            A + +E    + G+   ++   L +  +ATD +RL
Sbjct: 115 EMPESAGTIDAAAFAAAVAQ--VAVAASRDETLPMMTGVRVELSGGTLSM--LATDRYRL 170

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESL 235
           A+ E++      ++  + +VP + + +  + L      V ++LS     E  I  +  + 
Sbjct: 171 ALREMEWNPDDPEISINALVPARTLNDTAKALGPVGGQVTMALSQGAAGEGMIGFSGGTR 230

Query: 236 SMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             + RL+DG  +P  +++ P S++ E RV  + L + V RV++++  R   V LS S+D 
Sbjct: 231 RTTSRLLDGANYPPVRSLFPASHNAEARVPVSTLIEVVKRVALVAE-RTTPVLLSFSADG 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     +  +A E+M   +   P+ I FN +YL++ + N+ +   V   V    D+  
Sbjct: 290 LVVEAGGTEEARASEAMEATFTGEPLTIGFNPQYLIDGLANLGAQFAVLQFV----DAFK 345

Query: 355 SSVFIRGKDKDSKNNKDNK-VNAF-YVLMPMRI 385
            +V        S   +D + +  + Y++MP+R+
Sbjct: 346 PAVI-------SPAGEDGELIGGYRYLIMPIRV 371


>gi|254387091|ref|ZP_05002365.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1]
 gi|194345910|gb|EDX26876.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1]
          Length = 376

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 93/395 (23%), Positives = 172/395 (43%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDRVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   + D  +A+E ++       + I FN  +LL+ +  I S             
Sbjct: 289 QGVLILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDS-----PAAQLSFT 343

Query: 352 SSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
           +S     + G+   D++ ++  K    Y++MP+R+
Sbjct: 344 TSTKPALLSGRPAVDAEADEAYK----YLIMPVRL 374


>gi|251771681|gb|EES52256.1| DNA polymerase III, beta subunit [Leptospirillum ferrodiazotrophum]
          Length = 391

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 89/357 (24%), Positives = 156/357 (43%), Gaps = 27/357 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEI---KASGPEIEITGA 56
           M   +E+S  LE L     + +RKN   +S H+LL+A  DGL  +   +++G  + +   
Sbjct: 1   MDFLIEQSVFLEGLEKVSVLSDRKNIALLSSHILLEAGEDGLTLLSFDQSAGGRLRV--- 57

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            PA V   G  TV    ++ IVR+L  G    F +E        +    + F+L+     
Sbjct: 58  -PAKVTTPGQATVLGKKIFQIVRELAPGMIHVFREEGGRKGMTTVEKDSAVFHLKGIDPR 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH---INEEDLKLCA 173
           +F S  E    YSF +    L+ L+E+T      EE   Y+NG+ F     +     L  
Sbjct: 117 DFASFPEITPEYSFGVPIRDLQRLIEKT-LPFVVEEEGTYMNGVLFQRERTSGGKAALNV 175

Query: 174 VATDGHRLAVAE--------VDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSL 223
           V TDG+ L   +        +D+  Q  K    ++ R+   +++R+L   SKD  + V +
Sbjct: 176 VGTDGNGLHHGQIPLGEEGGIDLSEQGEK--RFLIKRRHAADLMRMLETDSKDEKLTVEI 233

Query: 224 SESRIHLNIESLSMS--VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
           S +  +     L     VRL+D  FPNY++V P  +   + +        + R  ++S  
Sbjct: 234 SVNPRYAQFRWLGFYFFVRLLDLRFPNYRDVFPEEHSVTVDMGREAATSIIRRAGLISEK 293

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            ++ ++L+     + MT  N D+G + E         P    F+ + L +++  +  
Sbjct: 294 NVE-LELTWDERAVTMTSQNIDIGDSREQTPAIVTGPPSGFFFSIQSLSKLLGVVGG 349


>gi|213690931|ref|YP_002321517.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522392|gb|ACJ51139.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320456977|dbj|BAJ67598.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 374

 Score = 94.0 bits (232), Expect = 3e-17,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 181/391 (46%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ + + P+   V L+A +G L+  A   EI     I A 
Sbjct: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIEGTLQFSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L+  ++ ++   +  G+ + I+ G S F LQ  P++E+P 
Sbjct: 61  VDEAGSVLVQGKLLADITKSLR--SEKTYLVTD--GSTLTITSGKSKFTLQLMPDTEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +   ++ +      V +   A++ EE R  L G+      +  K+   +TD  R
Sbjct: 117 LPVVPAMLG-QVDAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIESLS 236
           LA A      Q   + +  + R   G +L+ +  + D    + L   ++S   L  E+  
Sbjct: 174 LARATFTWTPQNPDVDTTTLVR---GSLLKDVARALDEHQNIRLDFDADSPTLLGFENAG 230

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +       +  VN  +L  A+ RV++++  R   ++++ +  +
Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVAE-RNAPIRMTFTGQE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++  + D  +A E++++  +   + + FN  YL E +       V +  V  ++ +  
Sbjct: 290 VALSAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGL-----SAVTEPFVRIKMTTPV 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V   G+    + + D  ++  Y+L+PMR 
Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMRF 372


>gi|291547606|emb|CBL20714.1| DNA polymerase III, beta subunit [Ruminococcus sp. SR1/5]
          Length = 371

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/382 (21%), Positives = 177/382 (46%), Gaps = 46/382 (12%)

Query: 17  ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76
           A + +  K T+P+   +L+ A    ++   +  E+ I   +  +++  G + + A + Y+
Sbjct: 17  ALKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVEGTIEEKGKVALDAKIFYE 76

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF--PSTKEEEYVY------ 128
           I+R+L D              +V I   D      +  +++F  P    E++ Y      
Sbjct: 77  IIRRLPDN-------------DVTIKTDDKYAATITCEKAKFNIPGKSGEDFAYLPMIEK 123

Query: 129 --SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                ++   LK ++ +T F++A  E    + G  F I    LK+  V+ DGHR+++ ++
Sbjct: 124 DEPLTISQYTLKEMIRQTIFSIAVNENNKLMTGELFEIKNNCLKV--VSLDGHRISIRKM 181

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
            +    +    ++VP K + E+ +ILS + D  V +  +++ I    +   +  RLI+GE
Sbjct: 182 SLKKDYSDR-KVVVPGKTLSEVSKILSGEVDDQVSIYFTKNHILFEFDQTMVVSRLIEGE 240

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDM 304
           +     ++    + +L++N       +DR +++   V  + + ++++ D + + +D+  M
Sbjct: 241 YFRIDQMLSSDYETKLKINKKEFLDCIDRATLLVREVDKKPIIINITDDDMELRIDSA-M 299

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSVFIRGKD 363
           G   E +++      + I FN K+L++ +       V+DDE V   L +  +  FIR   
Sbjct: 300 GSMNEEIDIEKEGKDIMIGFNPKFLIDAL------RVIDDETVTIYLVNPKAPCFIR--- 350

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
                  D++ N  Y+++P+ I
Sbjct: 351 -------DDEENYTYLILPVNI 365


>gi|253734730|ref|ZP_04868895.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253727295|gb|EES96024.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 161

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 51/175 (29%), Positives = 101/175 (57%), Gaps = 14/175 (8%)

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           +L   D+ ++V +  + I  ++     + +L+DG FP+Y+ V+P + DK L   C  L+Q
Sbjct: 1   MLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQ 60

Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330
           A  R +I+S+ + + V+L +S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L
Sbjct: 61  AFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVL 120

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++++ +  + V       R+  ++S   ++ +D  S+       +A YV+MPMR+
Sbjct: 121 DVLNALKCENV-------RMMLTDSVSSVQIEDAASQ-------SAAYVVMPMRL 161


>gi|213966240|ref|ZP_03394424.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46]
 gi|213951092|gb|EEB62490.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46]
          Length = 396

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/405 (23%), Positives = 174/405 (42%), Gaps = 36/405 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I   + D+   +    R +  + T P+   ++  A+D  L++     E+     I A 
Sbjct: 6   VRIRAAKDDLAGAVSWVARNLPARPTQPILRGMIFLADDNGLQLAGYDYEVSTQIRISAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           VD  G   V+  L+ DIV KL +       K+ E+   GT+V +  G S F L S    +
Sbjct: 66  VDEPGRFAVNGKLVSDIVSKLPN-------KQVEMHFDGTKVIVRCGSSRFELPSLTLED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P   E        + +++L   + +   A   +E    L GI       ++ L   ATD
Sbjct: 119 YPQLPEAPAATG-TVDAALLAEAIGQVAVAAGKDESLPMLTGIRMETEGNEVTLA--ATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL------------SE 225
             RLAV   +          +++P K   E  R L +  SS  V+L            SE
Sbjct: 176 RFRLAVRSFEWEQVPEGETKLLIPAKTFAETARTLDTT-SSEPVTLAFGDGSDDREVGSE 234

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             + +  +    + RL+D EFP ++ ++P  +          L+ A+ RVS+M+    Q 
Sbjct: 235 GLLAILADPRRTTTRLLDAEFPKFRPLLPKQHSSMAVARVDQLQDAIRRVSLMADHGAQ- 293

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +++  S  ++ ++    ++G A E++   +   P+ I FN +YLLE +  + S  V    
Sbjct: 294 IRMDFSDGQVVLSAHGDEVGHAEETVACNFYGEPLLIAFNPQYLLEGLSAVRSHRV---- 349

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           ++     S  ++ I   +   +  +D      + +  Y+LMP+R+
Sbjct: 350 LLGFTQPSRPAILIPEPEAIPELGEDGFYPTPETDFTYLLMPVRL 394


>gi|50953927|ref|YP_061215.1| DNA polymerase III subunit beta [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950409|gb|AAT88110.1| DNA polymerase III, beta subunit [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 381

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 163/348 (46%), Gaps = 21/348 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    R    E +  A +++ ++ T+P+   VL++  +  L++ +   E+     I A 
Sbjct: 1   MKFQANRDVFSEAVSFAVKLLPQRTTLPILSGVLIETTENGLQLSSFDYEVSAQTKIAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + VS  LL +I  KL + A + F  E    +++ +  G +NF L S P  E+PS
Sbjct: 61  VEETGRVLVSGRLLAEIAAKLPN-APVQFSTEE---SKIIVKAGSANFTLLSMPVEEYPS 116

Query: 121 ----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
               + E   V + E A +V +        A + +++   + G+   + +  L L  VAT
Sbjct: 117 IPDVSGEAGLVPAEEFAEAVAQ-----VGVAASRDDVTPVITGVQLEVGDNTLGL--VAT 169

Query: 177 DGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR--IHLN 231
           D +R+AV E+D      + +  + +VP + + EI + L  S   S+ ++  + R  I   
Sbjct: 170 DRYRVAVREIDWDNGTTLGETKTALVPARTLTEIGKTLGHSGTVSIAITNRDDRELIAFT 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +  +++  LI G FP  + + P   +    +N   L +A  RVS++   R  A++ + +
Sbjct: 230 DDRKTVTSLLIKGNFPPVRRLFPDQVENHAVMNTAELIEATRRVSLVLE-REAALRYTFT 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           +D L +     +  +A ES++         +    ++LL+ +  + S+
Sbjct: 289 ADGLTLEAIGSEQAQASESIDALLTGQETVVSLKPQFLLDGLGAVHSE 336


>gi|118587494|ref|ZP_01544919.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163]
 gi|118432144|gb|EAV38885.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 374

 Score = 94.0 bits (232), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 82/351 (23%), Positives = 168/351 (47%), Gaps = 30/351 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V+R+++   L    R I  K  IP+   + +  ++  + +  S  EI I   + A 
Sbjct: 1   MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60

Query: 61  VDV-------CGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQS 112
            D         G I  +A+   +I++ L  D  +IS       G+++ I  G S+F +  
Sbjct: 61  KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEIS-----TEGSQIAIVGGSSDFTVAG 115

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +P     +   +  + SS L +++  T  A++ ++ R  L GI F I +  +K  
Sbjct: 116 QSADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK-- 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPS-----IIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           AV+TD HRL+        +I K+ +     ++VP KA+ E+  +L + D+ + +    S+
Sbjct: 174 AVSTDSHRLS-------QRITKIGNDSQADVVVPSKALIELRALLENIDN-LNLQFDRSQ 225

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV- 286
           + +++   +   RL++G++P    +IP  +     ++   L  ++DR S+++      V 
Sbjct: 226 LLVDLGETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVA 285

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNI 336
           + S+S DKL ++    ++GK +E + +  +    + I FN  ++ + + +I
Sbjct: 286 EFSISQDKLVLSTAQSEVGKVLEELLIDNFKGEDLKISFNPDFVRDALSSI 336


>gi|172039682|ref|YP_001799396.1| DNA polymerase III subunit beta [Corynebacterium urealyticum DSM
           7109]
 gi|171850986|emb|CAQ03962.1| DNA polymerase III, beta subunit [Corynebacterium urealyticum DSM
           7109]
          Length = 394

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 93/406 (22%), Positives = 178/406 (43%), Gaps = 40/406 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  +V + D    L    R +  K T P+   V++ A+D  LE+     E+     + A+
Sbjct: 6   VSFSVAKDDFASALAWVARALPTKPTQPILRGVMILADDDGLELSGFDREVSTRVRVNAN 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G I V+  L  DIV  L  G +I+       G+ V +    S F L +    ++P 
Sbjct: 66  VDEPGRILVAGKLASDIVGALP-GKEITM---EYSGSTVLVRSSSSRFELPAMTIEDYPV 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +   V    +  ++    + +   A   ++    L GI   I  E++ L   ATD  R
Sbjct: 122 LPDMPAVTG-TIDPNLFTEAISQVAIAAGKDDTLPMLTGIRMEIEGENVVLA--ATDRFR 178

Query: 181 LAV-------AEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-------SE 225
           LAV       A  D  A+      +++P + + +  R L  S +  +++++       ++
Sbjct: 179 LAVRSFQWNPASADAKAE------LLIPARTLADTARTLDHSLNDPIEIAIGSGEDIGAD 232

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             + +  ++   + RL+D +FP ++ ++P  ++    V    L  A+ RVS+++  R   
Sbjct: 233 GLLGIVTDARRTTTRLLDADFPKFRPLLPARHNAMASVEIAPLLDAIRRVSLVAE-RNSQ 291

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +++      L ++    D+G+A E +N  Y+  P+ I FN  YL + +  I +     + 
Sbjct: 292 IRMHFEESTLTLSAGGSDVGQAEEVLNCAYHGEPLTIAFNPAYLKDGLSAIHT-----ER 346

Query: 346 VVFRL-DSSNSSVFIRG-----KDKDSKNNKDNKVNAFYVLMPMRI 385
           VVF     S  ++ I       + ++     D + N  Y+LMP+R+
Sbjct: 347 VVFGFTQPSRPAILIPAPAELPEAEEDGTFPDPETNFKYLLMPVRL 392


>gi|282856281|ref|ZP_06265562.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455]
 gi|282585858|gb|EFB91145.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455]
          Length = 385

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 98/411 (23%), Positives = 185/411 (45%), Gaps = 64/411 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + +++ ++    A R+   K+T+     VL  A++              TG +  S
Sbjct: 1   MKLEITQNEFMKYWSMAERVTGTKSTMATLASVLCVADE--------------TGVMLNS 46

Query: 61  VDVCGSITVSAH-----------LLYDIVRKLQDGAQISFFK---ENELGTEVNISHGDS 106
            D+  +I V A            L   +V +L      S F    +NE GT   IS G S
Sbjct: 47  TDLKTTIRVKAEGATVLEPGKAILPLKVVGELFKKIVASPFTVEVDNEKGT---ISAGRS 103

Query: 107 NFYLQS-----FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161
           ++   +     FP+   P   EE   ++   A  + + L E        E+   YL+G  
Sbjct: 104 HYSFTTCNVGDFPDLPSPRAAEE---FTRVSAGELSRVLAEGGIAGAPNEDFPKYLSGGL 160

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILS--SK 215
             I   +L++  VATDG RL++++  I     A  A+   +++P K++ E  RIL+  + 
Sbjct: 161 MQIAGGELRV--VATDGRRLSLSKTMIENADAASSAR--EMLLPLKSLEEYQRILTGFAP 216

Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
           D  V+V    +  + N+  +  SVR ID +FPNY+ ++  ++  +++ + +   QA+DR+
Sbjct: 217 DQEVEVLQDGAVTYFNMPGVQYSVRCIDSKFPNYERILSNTSTTQMQADRSGFMQALDRI 276

Query: 276 SIMSSVRIQAVKLSLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           +I+     + V L+LS    + ++   P++G+A ES++   +  P+ + FN  YL+  I 
Sbjct: 277 NIVVGDNSRVVILTLSPGAAMELSGRAPEIGEANESVDASISGEPLKVAFNVGYLMAGIK 336

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +V              ++   G +      +    +  Y+LMP+++
Sbjct: 337 AFHGSDV--------------TLAFNGAEGQMMITRPGGTDFVYMLMPIKL 373


>gi|320009751|gb|ADW04601.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 376

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 174/396 (43%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSAKVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           ++  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  IEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++   +   + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAVLDGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ +   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 374


>gi|145592569|ref|YP_001156866.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440]
 gi|145301906|gb|ABP52488.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440]
          Length = 377

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 94/396 (23%), Positives = 182/396 (45%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   VLL+  DG L++  SG + E++  +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVLLRVTDGNLQV--SGFDYEVSSQVTVE 58

Query: 61  V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V  D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++
Sbjct: 59  VQGDADGATLVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P T  E  V +  + ++     V +   A   +E    + G+   ++   L +  +ATD 
Sbjct: 115 P-TLPEMPVSAGTIDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGGTLAM--LATDR 171

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLA+ E++   +  ++  + +VP + + +  + L      V ++LS     E  I    
Sbjct: 172 YRLALREIEWNPEDPEISLNALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFVG 231

Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                + RL+DG  +P  +++ P + + + +V  + L + V RV++++  R   V LS S
Sbjct: 232 GPRRTTSRLLDGANYPPVRSLFPATQNAQAQVPVSALIEVVKRVALVAE-RTTPVLLSFS 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            D L +     +  +A E+M   ++  P+ I FN +YL++ + N+ +   V   V    D
Sbjct: 291 DDGLVVEAGGTEEARASEAMEATFSGDPLTIGFNPQYLIDGLSNMGTQFAVLSFV----D 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           +   +V        S   +D +V     Y++MP+R+
Sbjct: 347 AFKPAVI-------SPVGEDGEVVPGYRYLIMPIRV 375


>gi|238061914|ref|ZP_04606623.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149]
 gi|237883725|gb|EEP72553.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149]
          Length = 377

 Score = 93.6 bits (231), Expect = 4e-17,   Method: Compositional matrix adjust.
 Identities = 92/396 (23%), Positives = 185/396 (46%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   V+L+  DG L++  SG + E++  +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQV--SGFDYEVSSQVTVE 58

Query: 61  V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V  D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++
Sbjct: 59  VQGDADGAALVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  +     +  + ++   + V +   A   +E    + G+   ++  +L +  +ATD 
Sbjct: 115 PALPDMPE-SAGTVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGGNLAM--LATDR 171

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLA+ E++      ++  + +VP + + +  + L      V ++LS     E  I  + 
Sbjct: 172 YRLALREMEWHPDDPEVSINALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFSG 231

Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +   + RL+DG  +P  +++ P S++ E R+  + L + V RV++++  R   V LS S
Sbjct: 232 GTRRTTSRLLDGANYPPVRSLFPASHNAEARLAVSTLIEVVKRVALVAE-RTTPVLLSFS 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           SD L +     +  +A E+M   +   P+ I FN +YL++ + N+ +   +   V    D
Sbjct: 291 SDGLVVEAGGTEEARASEAMEATFTGDPLTIGFNPQYLIDGLANLGAQFALLSFV----D 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           +   +V        S   +D +V     Y++MP+R+
Sbjct: 347 AFKPAVI-------SPAGEDGEVIPGYRYLIMPIRV 375


>gi|159035676|ref|YP_001534929.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205]
 gi|157914511|gb|ABV95938.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205]
          Length = 377

 Score = 93.6 bits (231), Expect = 5e-17,   Method: Compositional matrix adjust.
 Identities = 93/396 (23%), Positives = 183/396 (46%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   VLL+ +D  L++  SG + E++  +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPSRPSVPVLAGVLLRVSDANLQV--SGFDYEVSSQVTVE 58

Query: 61  V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V  D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++
Sbjct: 59  VQGDADGAALVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P T  E  V +  + ++     V +   A   +E    + G+   ++   L +  +ATD 
Sbjct: 115 P-TLPEMPVSTGTVDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGGTLAM--LATDR 171

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLA+ E++      ++  + +VP + + +  + L S    V ++LS     E  I    
Sbjct: 172 YRLALREMEWNPDDPEITLNALVPARTLHDTAKALGSLGGQVTMALSQGAAGEGMIGFAG 231

Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +   + RL+DG  +P  +++ P +++ + +V  + L + V RV++++  R   V LS S
Sbjct: 232 GTRRTTSRLLDGANYPPVRSLFPATHNAQAQVPVSALIEVVKRVALVAE-RTTPVLLSFS 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            D L +     +  +A E+M   +   P+ + FN +YL++ + N+ +   V   V    D
Sbjct: 291 GDGLVVEAGGTEEARASEAMEATFTGDPLTVGFNPQYLIDGLSNMGTQSAVLSFV----D 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           +   +V        S   +D +V     Y++MP+R+
Sbjct: 347 AFKPAVI-------SPVGEDGEVVPGYRYLIMPIRV 375


>gi|210614349|ref|ZP_03290168.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787]
 gi|210150693|gb|EEA81702.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787]
          Length = 369

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 183/384 (47%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++ + +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIICTKSNLAKGVNIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D  +I+   ++ L T +      + F + +    +F  
Sbjct: 61  IIQKGVIAIDAKIFSEIVRKLPDN-EITIESDSNLQTMITCEK--AKFSISAKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK L+ +T F++A  +    + G  F I+E  LK+  V+ DGHR
Sbjct: 118 LPYIEKAESITLSQFTLKELIRQTIFSIADNDSNKLMTGELFEIDENILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ + ++     +   ++VP K + E+ +ILS + DS+V +S +++ +    ++  +  
Sbjct: 176 ISIRKTELTKN-YQSRKVVVPGKTLMEVSKILSGEADSTVCLSFTDNHVVFEFDNTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+GE+     ++    + ++++N   L   +DR +++     +   +    D++    
Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVKINKKELLSCIDRATLLVKEGDKKPIIINIMDEVMELR 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +G   E + +      + I FN K+L++ +  I      D+EV   L ++ +  FI
Sbjct: 295 IKSQLGSMNEEIMISKEGKDLLIGFNPKFLIDALRVIE-----DEEVTIYLMNAKAPCFI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
           R          D K +  Y+++P+
Sbjct: 350 R----------DEKESYVYLILPV 363


>gi|24212702|ref|NP_710183.1| DNA polymerase III subunit beta [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45655916|ref|YP_000002.1| DNA polymerase III subunit beta [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193333|gb|AAN47201.1|AE011192_2 DNA polymerase III beta subunit [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599149|gb|AAS68639.1| DNA polymerase III beta subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 373

 Score = 93.2 bits (230), Expect = 6e-17,   Method: Compositional matrix adjust.
 Identities = 93/402 (23%), Positives = 188/402 (46%), Gaps = 46/402 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V  S+ L+ +     +I  +    +  ++ ++A      + A+  EI I  ++PA 
Sbjct: 1   MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++++ A  L    + +        F++  L  E + S+    +   +  ++++ S
Sbjct: 61  VTQEGNVSLPAKQLSSFFKTIH-------FEDTNLSLEESDSNSSIVYITDASGKNDYKS 113

Query: 121 TK--------------EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
                           +   V SF   S+++ +++ +T +A+A E+ R+  NG++   N 
Sbjct: 114 KISGMDADEIKTISKIDSSQVSSF--PSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNG 171

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
           +  KL  V TDG RL   E  + + +    SIIVP KA+ EI +++++ +    + L + 
Sbjct: 172 D--KLIFVGTDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEVG-NIGLIDG 228

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I+++  ++ +  +LI+G FPNY+ VIP +      ++    + ++ +V   +    + V
Sbjct: 229 QIYVSANNIELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQV 288

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           +L+ S + L +      +G +  S+N  + Y+   + I F  +YL++I  +I      D+
Sbjct: 289 RLTFSKNNLNLFAQT--LGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DN 341

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY-VLMPMRI 385
           EV      +NS V            KD     F  V+MPM++
Sbjct: 342 EVKIEFSDANSPVIF----------KDPSDPEFISVIMPMKL 373


>gi|332702339|ref|ZP_08422427.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552488|gb|EGJ49532.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 387

 Score = 93.2 bits (230), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 99/398 (24%), Positives = 181/398 (45%), Gaps = 35/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R DI+E L  +  II  K        + L+A DG L+I A+   +E  G+  A 
Sbjct: 1   MFVRVFRDDIIEGLQKSASIIPAKTGAAFLRTIWLKAEDGALKIMATDSNLEFCGSYKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G   V     YD++RKL  G QI+  + +E      I  G   + L     S F  
Sbjct: 61  IVQEGLAGVQGRAFYDLMRKLPSG-QIT-IRTDEATKNAIIEQGSRKYKLPVNDPSWFQK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHI-NEEDLKLCAVAT 176
             +         +   L+ L++R  F ++ E   E    +N +   +  E+ +++C +  
Sbjct: 119 FSDYPESGGVFWSGDFLQELIDRVAFCISDEDTMEAIACMNMVGKDVEGEKVVEVCGL-- 176

Query: 177 DGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-- 232
           +GH+ A+     D +A +     I+V +K V E+ + L++ +  +++++S+ R+      
Sbjct: 177 NGHQFAMVRFVNDDIAGLLPENGILVQKKYVSELKKWLTADE--IELAISDKRLFCRTGD 234

Query: 233 --ESLSMSVRLIDGEFPNYQNV---IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
             E+ S+ +     ++P+YQ     +  +    L    T + +++DR+ I +S   + V 
Sbjct: 235 RRETFSLPLSYY--QYPDYQGFLAKVQGNGASSLSFARTEMIESLDRIMIFNSETNRCVN 292

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
              +  +L +     D+G+A ES+ V ++     I F  + L+EI+ + SS     D V 
Sbjct: 293 FVFNGQELTLFSQGQDVGQASESIQVDFSGELEKIAFPTRNLIEILGHYSS-----DRVS 347

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F L  S     IR     S+ +KD  V    ++MPM+I
Sbjct: 348 FTLTGSEGPCGIR-----SEQDKDYLV----IIMPMKI 376


>gi|282863319|ref|ZP_06272378.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
 gi|282561654|gb|EFB67197.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
          Length = 376

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 171/396 (43%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           ++  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  IEEDGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+           +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPTMPTATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++       + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + G+   D++ N   K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGRPAVDAEANDAYK----YLIMPVRL 374


>gi|258511078|ref|YP_003184512.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477804|gb|ACV58123.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 369

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 86/337 (25%), Positives = 162/337 (48%), Gaps = 10/337 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+S +   L    R+   +++  V   VL++A+ G +   A   ++ +   + AS
Sbjct: 1   MRCLIEQSVLEPTLSAMARVAPVRSSAAVLQGVLVEADRGQVTFSAYDYDVALRMTMEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A L  ++VR+L  G   I+    + L   +++    ++  L  F   EFP
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDVD--ATHAELHGFDPEEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDG 178
              +   +   EL++  L   VE   +A A  +  R  L G+  H+  +D +L   AT+ 
Sbjct: 119 ELPDMRGIAPVELSAKTLVAAVESVGYAAAKRDPTRPILEGV--HVACDDGRLVWTATNA 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
            RL   +  +  ++       VPR+ + E+LR+L  ++ ++V+V  S S +    + + +
Sbjct: 177 LRLVQVKQAVDGELPI--RFTVPRRGLSELLRLLEDEEETTVQVYQSASYVMFAWDHVQL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RL  G +P+   VIP     E RV    L QAV+R +I++     +V L LS+  LCM
Sbjct: 235 YTRLYQGGYPDVTRVIPTEFIAECRVERDRLEQAVERTTILAENEHHSVTLELSNGALCM 294

Query: 298 TVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEII 333
           +    D G+A E + +  +    + +  N +++LE++
Sbjct: 295 SSRARDRGQAREEVPILESSGEEVRVALNARFVLEML 331


>gi|255326480|ref|ZP_05367562.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296520|gb|EET75855.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296]
          Length = 374

 Score = 92.8 bits (229), Expect = 7e-17,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 178/394 (45%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L+ A+ G + I +   E      I A 
Sbjct: 1   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSAHQVIAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V   +L +I R L + A + F  +  +   + I    +NF L   P  ++P 
Sbjct: 61  VEAEGVCLVPGKILAEICRSLPN-APVEFTADESV---IRIHCRSANFQLAGMPVVDYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V++   A++ +E    L GI   IN + + L  +ATD +R
Sbjct: 117 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 173

Query: 181 LAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNI 232
           LA+ E+       D+ A      ++++  K V E+   LS S D S+ +  +   I    
Sbjct: 174 LAMREIKWNPVNPDVQA------AVLLKAKTVSEVGSTLSGSGDLSIALPAAGELIGFAA 227

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +   +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  + 
Sbjct: 228 GTRRTTSVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVAE-RNTPLRLKFTQ 286

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351
             + +     D  +A E++  + +   + + +N  YL + +      +V   E V F   
Sbjct: 287 GSVAIDAGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGL------KVFGTEFVRFSFT 340

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +     I G+D+     +D++ N  Y+LMP+R+
Sbjct: 341 DAPKPAVISGQDEPLA--EDDR-NYRYLLMPVRL 371


>gi|297200941|ref|ZP_06918338.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
 gi|197716888|gb|EDY60922.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
          Length = 376

 Score = 92.8 bits (229), Expect = 8e-17,   Method: Compositional matrix adjust.
 Identities = 97/396 (24%), Positives = 178/396 (44%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G++ VS  LL DI R L +       +  E+   G    +  G S F L + P  E
Sbjct: 61  VEEEGTVLVSGRLLADICRALPN-------RPVEISTDGVRATVVCGSSRFTLHTLPVEE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+  +        +   V  +   +   A   ++    L G+   I  + + L   +TD
Sbjct: 114 YPALPQMPSATG-TVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTLA--STD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R AV E     +  +  ++ +VP K + +  + L+S D SV ++LS     E  I   
Sbjct: 171 RYRFAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-SVILALSGSGAGEGLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+ P Y+++ P   +    +      +AV RV++++  R   V+LS  
Sbjct: 230 GAGRRTTTRLLEGDLPKYRSLFPTEFNSVAVIETAPFVEAVKRVALVAE-RNTPVRLSFE 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L +   + D  +A+E ++ +     + I FN  +LL   D +S+   +D  V     
Sbjct: 289 QGVLILEAGSSDDAQAVERVDAHLEGDDVSIAFNPTFLL---DGLSA---IDSPVAQLSF 342

Query: 351 DSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
            +S     + GK   D++ ++  K    Y++MP+R+
Sbjct: 343 TTSTKPALLSGKPALDAEADEAYK----YLIMPVRL 374


>gi|305681648|ref|ZP_07404454.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|305658808|gb|EFM48309.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 418

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 30/398 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K   PV   +L+ A+D  LE      E+     IPA V+  
Sbjct: 32  VAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVNQP 91

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I V+  L+ DI   L +   +  F +   G+ V +  G S F L S P  ++P+    
Sbjct: 92  GRIAVAGKLIADITATLPN-KPVEIFVD---GSTVQLKCGSSRFELPSIPLDDYPTLPTL 147

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             V    +   +  + V +   A   ++    L G+   I  ED+ L   ATD  RLA+ 
Sbjct: 148 PEVTG-AINPRLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITLT--ATDRFRLALR 204

Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235
               +       + +++P K   E  R L +  +  V++++       +E    +++++ 
Sbjct: 205 RFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVDAR 264

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL+D EFPN   ++P  +     V  ++L+ A+ RV++++    Q +++  +  ++
Sbjct: 265 QTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVADRNAQ-IRMHFTPGEV 323

Query: 296 CMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DS 352
            ++    D G A ES+   +   E  + I FN  YL + +  + +       VVF   +S
Sbjct: 324 LLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHVVRT-----QRVVFGFTES 378

Query: 353 SNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           S  ++ I   +K  + N D        +  Y+LMP+R+
Sbjct: 379 SRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 416


>gi|225020876|ref|ZP_03710068.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946358|gb|EEG27567.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 396

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 176/398 (44%), Gaps = 30/398 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K   PV   +L+ A+D  LE      E+     IPA V+  
Sbjct: 10  VAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVNQP 69

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I V+  L+ DI   L +   +  F +   G+ V +  G S F L S P  ++P+    
Sbjct: 70  GRIAVAGKLIADITATLPN-KPVEIFVD---GSTVQLKCGSSRFELPSIPLDDYPTLPTL 125

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             V    +   +  + V +   A   ++    L G+   I  ED+ L   ATD  RLA+ 
Sbjct: 126 PEVTG-AINPRLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITLT--ATDRFRLALR 182

Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235
               +       + +++P K   E  R L +  +  V++++       +E    +++++ 
Sbjct: 183 RFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVDAR 242

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL+D EFPN   ++P  +     V  ++L+ A+ RV++++    Q +++  +  ++
Sbjct: 243 QTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVADRNAQ-IRMHFTPGEV 301

Query: 296 CMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DS 352
            ++    D G A ES+   +   E  + I FN  YL + +  + +       VVF   +S
Sbjct: 302 LLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHVVRT-----QRVVFGFTES 356

Query: 353 SNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           S  ++ I   +K  + N D        +  Y+LMP+R+
Sbjct: 357 SRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 394


>gi|119394196|gb|ABL74460.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 195

 Score = 92.8 bits (229), Expect = 9e-17,   Method: Compositional matrix adjust.
 Identities = 57/204 (27%), Positives = 116/204 (56%), Gaps = 9/204 (4%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+   + +    L AVATDG+R+ + +  I   +    S+I+PRK +  + ++L+
Sbjct: 1   RYYLNGML--LKKVKTLLYAVATDGYRMGITKTSIQEDVIPF-SVIIPRKGIVGLYKLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            K   ++  + ++ I + IE L  +++LI+G +P+Y +++    +  + +N   L+Q++ 
Sbjct: 58  IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYISILLKHKNCPIILNSQQLKQSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I++S     +++ + ++K  +  DN + G A +S  + Y    ++I  N  Y+L+I+
Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEEEG-AEDSFKINYFNNEVEISINVYYILDIL 176

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + ISS       +   L+ SN+S+
Sbjct: 177 NVISS-----KNIFLFLNESNNSI 195


>gi|166032889|ref|ZP_02235718.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC
           27755]
 gi|166027246|gb|EDR46003.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC
           27755]
          Length = 369

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 184/384 (47%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD+++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIVCNKSDLVKGVNIVSKAVPGKTTMPILECILIDATTDIIKLTANDMELGIQTEIAGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D  ++S   ++ L T   I    + F +   P +EF  
Sbjct: 61  IIDRGMIAIDAKIFSEIVRKLPDN-EVSIETDDRLQT--TIVCEKAKFDISGKPGNEFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  ++   LK ++ +T F++A  E    + G  F I +  L++ ++  DGHR
Sbjct: 118 LPIIEKDDSIVISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNVLRVASL--DGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++   ++    ++VP K + EI +ILS + +S V++S + + I    ++  +  
Sbjct: 176 ISIRKIELKNPVSDY-KMVVPGKTLIEISKILSGEAESMVEISYTNNHIVFEFDNTIVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G++     ++    D ++R+N       +DR +++     +   +    D++    
Sbjct: 235 RLIEGDYFKIDQMLSSDYDTKVRINKKEFLNCIDRATLLIKEGDKKPIIIDIQDEMMELK 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +G   E + +  +   + I FN K+L++ +  I      D+EV   L ++ +  FI
Sbjct: 295 IKSQIGSMNEEIMISKDGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCFI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
                     KD   +  Y+++P+
Sbjct: 350 ----------KDETESYIYLILPV 363


>gi|225570326|ref|ZP_03779351.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM
           15053]
 gi|225160858|gb|EEG73477.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM
           15053]
          Length = 406

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 87/384 (22%), Positives = 181/384 (47%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 39  MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATADIIKLTANDMELGIQTEIEGE 98

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        E +   +  I+   + F L   P  EF  
Sbjct: 99  ITERGMIAIDARIFSEIVRKLPDS---DIVIETDANLQTVITCEKAKFDLSGKPGEEFSY 155

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S E++   LK ++ +T F++A  E    + G  F I +  L++  V+ DGHR
Sbjct: 156 LPIIEKEESIEISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNILRV--VSLDGHR 213

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  ++A    ++VP K + E+ +ILS + +S V +S + + I    ++  +  
Sbjct: 214 ISIRKIELKNEVAD-KKLVVPGKTLTEVSKILSGEAESMVNISYTNNHIVFEFDNTIVVS 272

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+GE+     ++    + ++R+N   L   +DR +++     +   +    D++    
Sbjct: 273 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDEIMELK 332

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +G   E + +      + I FN K+L++ +  I      D+E    L ++ +  FI
Sbjct: 333 IKSQIGSMNEEIMIEKEGKDLLIGFNPKFLIDALRVID-----DEEATLYLMNAKAPCFI 387

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
                     KD+  +  Y+++P+
Sbjct: 388 ----------KDDAESYIYLILPV 401


>gi|296120310|ref|YP_003628088.1| DNA polymerase III, subunit beta [Planctomyces limnophilus DSM
           3776]
 gi|296012650|gb|ADG65889.1| DNA polymerase III, beta subunit [Planctomyces limnophilus DSM
           3776]
          Length = 377

 Score = 92.4 bits (228), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 69/277 (24%), Positives = 134/277 (48%), Gaps = 15/277 (5%)

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
           V GS  +    L  I+R+L D       + N  G  V +  G S F L +   ++FP+  
Sbjct: 71  VGGSALLPTQRLTSILRELTD--DTVSLEVN--GDAVWLRCGGSEFRLSAEDPADFPTAP 126

Query: 123 E---EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           E   E+Y   F + + V + L++RT FA   E  RY L G+   I  + +++ A  TD  
Sbjct: 127 EFVEEDY---FVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRMAA--TDSR 181

Query: 180 RLAVA--EVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           RLAVA     +  Q ++     +VP KA+  I + L  + ++V +++  + I +     S
Sbjct: 182 RLAVAVGACSVEGQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDISIRAGRAS 241

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +L+ G FP+Y+ VIP   + E+ +  +    AV +  ++++   + V  + +   L 
Sbjct: 242 ITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFTFAEGTLR 301

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           +     D+G++   + + Y    + I F+ +++ + +
Sbjct: 302 LASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFL 338


>gi|24753762|gb|AAN64010.1|AF434658_7 DNA polymerase III, beta subunit [Leptospira interrogans]
          Length = 373

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/376 (22%), Positives = 179/376 (47%), Gaps = 35/376 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V  S+ L+ +     +I  +    +  ++ ++A      + A+  EI I  ++PA 
Sbjct: 1   MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++++ A  L    + +        F++  L  E + S+    +   +  ++++ S
Sbjct: 61  VTQEGNVSLPAKQLSSFFKTIH-------FEDTNLSLEESDSNSSIVYITDASGKNDYKS 113

Query: 121 TK--------------EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
                           +   V SF   S+++ +++ +T +A+A E+ R+  NG++   N 
Sbjct: 114 KISGMDADEIKTISKIDSSQVSSF--PSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNG 171

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
           +  KL  V TDG RL   E  + + +    SIIVP KA+ EI +++++ +    + L + 
Sbjct: 172 D--KLIFVGTDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEVG-NIGLIDG 228

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I+++  ++ +  +LI+G FPNY+ VIP +      ++    + ++ +V   +    + V
Sbjct: 229 QIYVSANNIELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQV 288

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           +L+ S + L +      +G +  S+N  + Y+   + I F  +YL++I  +I      D+
Sbjct: 289 RLTFSKNNLNLFAQT--LGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DN 341

Query: 345 EVVFRLDSSNSSVFIR 360
           EV      +NS +  +
Sbjct: 342 EVKIEFSDANSPIIFK 357


>gi|328476246|gb|EGF46930.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus MTCC 5462]
          Length = 334

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 66/272 (24%), Positives = 136/272 (50%), Gaps = 13/272 (4%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            G I + A    +IV++L +       K+N    +  I+ G S F ++    + +P   E
Sbjct: 26  TGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGEDANNYPRLPE 82

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
                +  + + VL+ L+ +T  A++T+E R  L G+   I  +  +L AVATD HRL+ 
Sbjct: 83  ITADEALTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVAVATDSHRLSQ 140

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + + A       II+P K++ E+ R+L    + +++ ++E+++       +   RL++
Sbjct: 141 RTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFGQTAFYSRLLE 200

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKLCMTVD 300
           G +P+   +IP S++ +   +   L  ++ R S++   SS  +  + L++   K  +  +
Sbjct: 201 GNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNIGEQKATIYGN 260

Query: 301 NPDMGKAIESMNVYYNECP---MDICFNYKYL 329
           +PD+G   E ++  +N+     ++I FN  Y+
Sbjct: 261 SPDVGNVEEVLS--FNKLTGQDLEISFNPDYM 290


>gi|153815424|ref|ZP_01968092.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756]
 gi|317500886|ref|ZP_07959098.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089212|ref|ZP_08338114.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847283|gb|EDK24201.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756]
 gi|316897766|gb|EFV19825.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405764|gb|EGG85293.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 369

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 80/355 (22%), Positives = 171/355 (48%), Gaps = 33/355 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   + ++ + +    + +  K T+P+   +L+ A+  ++++ A+  E+ I  +I   
Sbjct: 1   MKIICTKQNLAKGVSIVSKAVPSKTTMPILECILIDASTDVIKLTANDMELGIETSIDGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G + ++A +  +IVRKL D   I    + +   +  I+ G + F + S P  EF  
Sbjct: 61  IIERGILALNAKIFAEIVRKLPDNEIII---DTQGDNQALITGGKAKFKIASLPGDEFSY 117

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+ ++++++   E     LK ++ +T F++A  +    + G  F I +  LK+  V+ D
Sbjct: 118 LPNIEKDDFITVSEFT---LKEVIRQTIFSIADSDTNKMMTGELFEIEDNILKV--VSLD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
           GHR+++ ++++    A    +IVP K + EI +I+  + ++ V +S +++ I    +   
Sbjct: 173 GHRISIRKIELKDSYAP-KKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTI 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLI+GE+     ++    + ++++N   L + +DR +++              DK  
Sbjct: 232 VVSRLIEGEYFRIDQMLSSDYETKVKINKRELLECIDRATLLIK----------EGDKKP 281

Query: 297 MTVDNPD----------MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +D  D          +G   E +        + I FN K+L+E +  I  +EV
Sbjct: 282 LIIDIRDESMEFKIKSQVGSMDEDIMCIKEGKDLLIGFNPKFLIEALRVIEDEEV 336


>gi|237784639|ref|YP_002905344.1| DNA polymerase III subunit beta [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237757551|gb|ACR16801.1| DNA polymerase III, beta subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 394

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 103/411 (25%), Positives = 186/411 (45%), Gaps = 58/411 (14%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASVDV 63
           V + D+   L    R +  K T P+   V++ A+D GLL    +G + E++  +  S +V
Sbjct: 10  VAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLL---LAGFDYEVSTRVRISAEV 66

Query: 64  C--GSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYL-----QSFPE 115
              G + V+  L  DI+  L      IS       GT+V+++ G SNF L     + +PE
Sbjct: 67  LEPGQVLVAGKLANDIIGSLPHKDVAISVD-----GTKVHVTCGQSNFELPAMTIEDYPE 121

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              PS  EE    +  +   V    + +   A   ++    L GI   +  +++ L A  
Sbjct: 122 --LPSLPEE----TGHIDPHVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDNVVLAA-- 173

Query: 176 TDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESR 227
           TD  RLAV E        D+ A+I      ++P + + +  R L ++ +  +++++  ++
Sbjct: 174 TDRFRLAVREFTWEPSSPDVDAEI------LIPARTLADSARTLDTRLNDPIQLAMGAAQ 227

Query: 228 -------IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
                  + +  E+   + RLID +FP ++ ++P S+     V    L  A+ RVS+++ 
Sbjct: 228 DVGKDGLLGIVSENRQTTTRLIDADFPKFRPLLPKSHSSMAIVEIAPLLDAIRRVSLVAE 287

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              Q VKL  S D+L ++    + G A E++   +   P+ I FN  YL E + +I +  
Sbjct: 288 RNAQ-VKLEFSEDQLVLSAGGSEAGTAEETLPAQFAGEPLLIAFNANYLKEGLASIDT-- 344

Query: 341 VVDDEVVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385
                VVF     S  ++ I   +   + + D +         Y+LMP+R+
Sbjct: 345 ---KNVVFGFTQPSRPAILIPEPETMPEQDSDGQFPTPSTYFTYLLMPVRL 392


>gi|255283815|ref|ZP_05348370.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM
           14469]
 gi|255265698|gb|EET58903.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM
           14469]
          Length = 367

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 85/386 (22%), Positives = 189/386 (48%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +++++L+ +    + +  K T+P+   +L+ A  G ++   +  E+ I   +  S
Sbjct: 1   MKIVCQKNELLKSVNIVMKAVPSKTTMPILECILIDATRGEIKFTTNDMELGIETVVNGS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I+RKL +  +++   +N+L  +  I    + F +      ++P 
Sbjct: 61  ILEKGKIALDARLFSEIIRKLPEN-EVTIETDNKL--QATILCEKAQFSISGKDGEDYPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  ++   LK ++++T F++A  E    + G  F I++  LK+  V+ DGHR
Sbjct: 118 LPFVEKDNSICISQFTLKEVIKQTIFSIAQNENNRMMTGELFEISDNILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++     K   I+VP K + EI +ILS + +  V +  +++ I    ++     
Sbjct: 176 ISIRKIELKENYEK-KKIVVPGKTLIEISKILSGETEDMVNIYFTKNHILFEFDNTIAVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++    + +L++N   L   +DR +++      + + + +S   + + 
Sbjct: 235 RLIEGEYFRIEQMLSSDYETKLKINKKELLNCIDRATLLIKEGDKKPIIIGISDTSMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSSV 357
           + N  +G   E +++      + I FN ++L++ +       V+DDE +   L +  +  
Sbjct: 295 I-NSQIGSMNEQISIEKEGKDILIGFNPRFLMDAL------RVIDDETITIYLVNPKAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FIR          D+  +  Y+++P+
Sbjct: 348 FIR----------DDAESYIYLILPV 363


>gi|229133511|ref|ZP_04262338.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196]
 gi|228649911|gb|EEL05919.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196]
          Length = 393

 Score = 92.0 bits (227), Expect = 1e-16,   Method: Compositional matrix adjust.
 Identities = 73/279 (26%), Positives = 140/279 (50%), Gaps = 22/279 (7%)

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
           L     +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I+   L
Sbjct: 131 LNGLSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRRVLTGVHFVIDHNKL 190

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +CA ATD HRLA+ E+ I +  AK+ + IVP   + E+L++++S  + V + LSES I 
Sbjct: 191 -ICA-ATDSHRLALREIPISSH-AKL-NCIVPNSTISELLKLMNSNSNLVYIYLSESHII 246

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKL 288
               ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L
Sbjct: 247 FKFGTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNL 306

Query: 289 SLSSD-KLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            +  +  + ++ +   +GK  E+  +   + E  ++I F+ +Y+++ +  I      +D 
Sbjct: 307 EIIDECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDR 361

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V      S   + I   ++ +         A Y++ P+R
Sbjct: 362 VTLSFGGSMRPILIEAGEQSA---------AVYLISPVR 391


>gi|302864510|ref|YP_003833147.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|315500820|ref|YP_004079707.1| DNA polymerase iii, beta subunit [Micromonospora sp. L5]
 gi|302567369|gb|ADL43571.1| DNA polymerase III, beta subunit [Micromonospora aurantiaca ATCC
           27029]
 gi|315407439|gb|ADU05556.1| DNA polymerase III, beta subunit [Micromonospora sp. L5]
          Length = 377

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 90/396 (22%), Positives = 184/396 (46%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   V+L+  DG L++  SG + E++  +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQV--SGFDYEVSSQVTVE 58

Query: 61  V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V  D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++
Sbjct: 59  VQGDADGAALVSGRLLAEITKAL----PAKPVDIAAVGAHLELVCGSARFTLPTMPVEDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  E     +  + ++   + V +   A   +E    + G+   ++   + +  +ATD 
Sbjct: 115 PTLPEMPE-SAGTVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGSTMAM--LATDR 171

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLA+ E++      ++  + +VP + + +  + L      V ++LS     E  I  + 
Sbjct: 172 YRLALREMEWNPDDPEISLNALVPARTLHDTAKALGPLGGHVTMALSSGGAGEGMIGFSG 231

Query: 233 ESLSMSVRLIDGE-FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +   + RL+DG  +P  +++ P  ++ E RV    L + V RV++++  R   V LS S
Sbjct: 232 GTRRTTSRLLDGANYPPVRSLFPADHNAEARVAVAALIEVVKRVALVAE-RTTPVLLSFS 290

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           +D L +     +  +A E+M   ++  P+ I FN +YL++ + N+ +       ++  +D
Sbjct: 291 ADGLVVEAGGTEEARASEAMEATFSGEPLTIGFNPQYLIDGLANLGAQHA----LLRFVD 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKV--NAFYVLMPMRI 385
           +   +V        S   +D +V     Y++MP+R+
Sbjct: 347 AFKPAVI-------SPAGEDGEVIPGYRYLIMPIRV 375


>gi|322379378|ref|ZP_08053749.1| DNA polymerase III subunit beta [Helicobacter suis HS1]
 gi|322380445|ref|ZP_08054646.1| DNA polymerase III subunit beta [Helicobacter suis HS5]
 gi|321147127|gb|EFX41826.1| DNA polymerase III subunit beta [Helicobacter suis HS5]
 gi|321148196|gb|EFX42725.1| DNA polymerase III subunit beta [Helicobacter suis HS1]
          Length = 363

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 70/284 (24%), Positives = 134/284 (47%), Gaps = 10/284 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           + + +E++ + E L +     +RK+   ++ H+ L+A   LL ++A+  E+ +   + AS
Sbjct: 3   LHLMIEKTRLEEALKNLIAFTDRKDLTNITSHICLEAKGDLLRLEANDLEMGLCLNLNAS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G  T +A    DI  KL+ G      KEN     V+IS   S F L  F +++FP+
Sbjct: 63  ILEEGGATFNAKHFLDIASKLEQGELTLQTKEN----YVHISFKRSKFKLPLFDKADFPT 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E +     + + L    ++    ++T   +Y   G+     +   +L  VATD  R
Sbjct: 119 FPSFEDLPFVHFSDTTLGEYFKKLTHVISTNASKYEFGGVLLVFKD---RLELVATDTRR 175

Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237
           LA+ ++D   +         I+P++A+ EI ++  S  D   +     S +     S+ +
Sbjct: 176 LALVQMDPDNMPTTKTTQEFILPKRAMLEISKLFESDFDMLYETHDQPSMLFFKNASMVL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
             +LI G++PNYQ +IP     +L ++    ++A+   + +SS 
Sbjct: 236 YSKLISGKYPNYQAIIPSEFTHQLELDTQKFKEAIQITNALSST 279


>gi|255323606|ref|ZP_05364736.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277]
 gi|255299320|gb|EET78607.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277]
          Length = 355

 Score = 92.0 bits (227), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 166/342 (48%), Gaps = 19/342 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + ++ +  ++ ++   +E+K+   ++ H+ + A DG+L IKA+  EI +   + ++
Sbjct: 1   MKVAINKNALESIVTNSNSYLEKKDLSAITSHIFIGAKDGILNIKATDHEIGLAYEL-SN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V +   G+ T +   L DI+R L+D  +I+      +   + I   +S + L  +   +F
Sbjct: 60  VKIMDEGNATANGKKLLDIIRSLKD-EEITL---ETVNNYLYIKQKNSKYKLPMYKFEDF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E    FE+ + +L   +++   ++     ++ LNG    I +  + +  V TD 
Sbjct: 116 PNFPTVENKNKFEVDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VGTDT 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RL+V   +   Q     S+I+P+KA+ EI ++   K   +++   ++ +     +    
Sbjct: 174 KRLSVFRFETPTQ--SEFSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANFEFF 228

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCM 297
            +LI+G FP+Y  VIP    + LR++   + + +  VSI+S S +I     ++S + +  
Sbjct: 229 TKLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISESTKIVFAPQTISFESIVE 288

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
             DN +    IE       E  + +    +YLL+ + NI  +
Sbjct: 289 --DNSEAKTTIEFATGLEEEIYVGV--KNRYLLDFLQNIEEE 326


>gi|291333916|gb|ADD93596.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 156

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 50/137 (36%), Positives = 87/137 (63%), Gaps = 3/137 (2%)

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P S+FPS    ++  S +++SS L +++  T  AMA +++RYYLNG    +  +   LC 
Sbjct: 2   PASDFPSIDSADFSSSIKISSSALADMIGSTSVAMAAQDVRYYLNGCL--VETKGNALCV 59

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V+TDGHRLA  +  I   + +   +IVPRKAV E+ +I+SS D  + +++S+++I++   
Sbjct: 60  VSTDGHRLAFTKTSIDG-LKEDFRVIVPRKAVMELQKIISSNDEEITLNVSQNQINVLGS 118

Query: 234 SLSMSVRLIDGEFPNYQ 250
             S + +LI+G +P+Y+
Sbjct: 119 VFSFTSKLIEGNYPDYE 135


>gi|212715152|ref|ZP_03323280.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661833|gb|EEB22408.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM
           16992]
          Length = 386

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 96/392 (24%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   V L+A DG L++ A    I     I A 
Sbjct: 13  MKVEVNSQALADAVAWTTRVIDARPASPILAGVRLEAIDGTLQLSAFNYAISARHHIEAG 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L   A  ++   +  G+ + I+ G S F +Q  P++E+P 
Sbjct: 73  VDEAGSVLVLGKLLADITKSLP--AAKTYLSTD--GSTMTITSGKSTFTMQLMPDAEYPD 128

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    +      V +   A++ EE R  L GI      +  K+   +TD
Sbjct: 129 LP----VIPSKLGQVDAQTFTQAVTQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 182

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL+ +      +     +  + R A + ++ R L    + V    +E+   L  E+  
Sbjct: 183 RFRLSRSSFTWTPENPDTNATALVRGALLRDVARSLDEHQNIVVDFDTENPSLLGFENAG 242

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +          +N  +L  A+ RVS+++  R   ++++ +S +
Sbjct: 243 RVSTSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVAE-RNAPIRMAFTSQE 301

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T    D  +A E +++  +   + + FN  YL+E +  I+     +  V  ++ ++ 
Sbjct: 302 LTLTAGTADEAQAKEILDIDMDGEDITVAFNPTYLIEGLSAIA-----EPFVRMKMTTAV 356

Query: 355 SSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             V   G ++ DS+ + D +    Y+L+PMR 
Sbjct: 357 KPVEFNGQQESDSEESMDYR----YLLVPMRF 384


>gi|229826863|ref|ZP_04452932.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC
           49176]
 gi|229788481|gb|EEP24595.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC
           49176]
          Length = 370

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 189/390 (48%), Gaps = 34/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +SD+++ +    + I  K T+P+   ++++  +  + + A+  E+ I   +   
Sbjct: 1   MLIKINQSDLIKSINIVIKAISTKTTLPILECIVIKTMENSIRLIANDMELGIETILSGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN----ISHGDSNFYLQSFPES 116
           +   GSI +++ L  +IVRKL +          E+ T+ N    I  G S F +      
Sbjct: 61  IIKEGSIALNSRLFSEIVRKLPNNLV-------EINTDDNYKATIKCGKSVFTISGQSIE 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP   + E + S  L+   LK ++ +T F+++  E    + G    IN  +L++  +A 
Sbjct: 114 EFPVLPQIEKIKSITLSQFSLKEMIRQTIFSISNNENMKVMTGELIEINNNNLRI--IAL 171

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235
           DGHR+++ ++ +  +   + + +VP K + EI +ILSS+ +  V +  S   I     + 
Sbjct: 172 DGHRISIRKIALKGEHENIKA-VVPGKTLSEISKILSSEIADEVTIYFSNKHIVFEFSNT 230

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDK 294
           +++ RLIDGEF N   +I    + ++ +N   L + +D  +  ++    + V L+++ + 
Sbjct: 231 TVNSRLIDGEFYNVDQMISSDYETKININRRELLENMDSALPFITEKEKKPVILNITENN 290

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSS 353
           + +++    +G     M +      + I FN   +++ +      +VV+DE +   L +S
Sbjct: 291 MNLSIKTT-VGNMNTDMELVKEGKDILIGFNPVLIMDAL------KVVEDENIDIYLFNS 343

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +  FI+ K++          +  Y+++P+
Sbjct: 344 KAPCFIKNKEE----------SYLYIILPV 363


>gi|194332855|ref|YP_002014715.1| DNA polymerase III subunit beta [Prosthecochloris aestuarii DSM
           271]
 gi|194310673|gb|ACF45068.1| DNA polymerase III, beta subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 375

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 81/358 (22%), Positives = 176/358 (49%), Gaps = 23/358 (6%)

Query: 32  HVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK 91
           H+ L  ++G L + A+  E+ IT          GS  + A  + + +R + D +     +
Sbjct: 35  HLFL--DNGSLTLYATDGELSITATTEVESTDQGSFGMKARTILEFLRSMYDTSVTFNIE 92

Query: 92  ENELGTE--VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149
             +L  +  ++IS     + +    ES+    K++++     L S+ L +++++T FA +
Sbjct: 93  RQQLSDQGLIDISTDKGRYRIPCSFESK-QEKKDKDFDLELTLTSADLLDIIQKTIFACS 151

Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209
            + +R  + G+   +  E+ K+ AV+TDGHRL        + +     I++P + +  IL
Sbjct: 152 VDGMRPAMMGVLLEL--ENNKITAVSTDGHRLVRCIKTCESGVETKKRIVIPARVLS-IL 208

Query: 210 RILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268
           + L+  D+ ++ +  + + +     +L +   LI  ++PNY+ VIP  N+K + +N + L
Sbjct: 209 QKLTQDDTVTLSIDTTNNSVRFVFPNLILDAALIVEQYPNYEAVIPLDNEKIVSINRSTL 268

Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYK 327
             +V RV   SS  I  +++S++   + +  +N + G+ A E +   Y+   + I FN K
Sbjct: 269 YDSVRRVGKFSS--IGDIRISVAESVMTLMAENTNEGESAQEEIACVYSGEDLVIGFNSK 326

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   + +I +     + +   L S  ++V ++ + ++ +       N   ++MP+RI
Sbjct: 327 FIEAALGHIET-----ETITMELSSPTTAVILKPEKEEEQQ------NLIILVMPVRI 373


>gi|291543410|emb|CBL16519.1| DNA polymerase III, beta subunit [Ruminococcus sp. 18P13]
          Length = 368

 Score = 91.7 bits (226), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 87/368 (23%), Positives = 172/368 (46%), Gaps = 14/368 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ++ DI   +G+  + +  K+TI     + ++ +  +LE+     E+ I   I A 
Sbjct: 1   MKFSCKKEDICAAIGNVSKAVSVKSTITALEGIRIKLSYTVLELTGYDLELGIRSTIEAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            + CG   V+A L  +I RK+ D  +I  F+ +E+   + I+   + + + +    E+P 
Sbjct: 61  SEDCGEFVVNARLFSEITRKMSD--EILTFETDEM-LNIRITGAVTEYCISAMSAEEYPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    + F +    LK+++ +T  A++  E +  + G  F I  ED     V +DG+R
Sbjct: 118 LPEVSDEHRFLVPQDQLKSMINQTAHAVSLNENKPVMTGALFDIT-EDGNFNMVTSDGYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV- 239
           LA+    I    A++   +VP + + E+ R+L  +D+     +  +  H+  E   ++V 
Sbjct: 177 LALRTEHI--DTAEVHRFVVPARTLSEVSRLL-KEDAKAPCGIYNNFKHIVFELGEITVF 233

Query: 240 -RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL++G+F NY+  IP     E+ V    L   ++R +++ + + +A    +  +     
Sbjct: 234 SRLLEGDFHNYRASIPPDKRTEVIVRTRELVNCLERCALLINEKNKAPVRCVFENGTVKV 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +G   +++ V  +   + I FN K++L   D + + E   D++   L   N  V 
Sbjct: 294 SCKTGIGSISDTIPVDLSGDAVTIGFNNKFML---DALRASEC--DKLRIHLSGGNRVVK 348

Query: 359 IRGKDKDS 366
           I   + DS
Sbjct: 349 IIPPEGDS 356


>gi|283457091|ref|YP_003361654.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18]
 gi|283133069|dbj|BAI63834.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18]
          Length = 380

 Score = 91.3 bits (225), Expect = 2e-16,   Method: Compositional matrix adjust.
 Identities = 95/394 (24%), Positives = 178/394 (45%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L+ A+ G + I +   E      I A 
Sbjct: 7   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSARQVIAAD 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V   +L +I R L + A + F  +  +   + I    +NF L   P  ++P 
Sbjct: 67  VEAEGVCLVPGKILAEICRSLPN-APVEFTADESV---IRIHCRSANFQLAGMPVVDYPE 122

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V++   A++ +E    L GI   IN + + L  +ATD +R
Sbjct: 123 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 179

Query: 181 LAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNI 232
           LA+ E+       D+ A      ++++  K V E+   LS S + S+ +  +   I    
Sbjct: 180 LAMREIKWNPTNPDVQA------AVLLKAKTVSEVGSTLSGSGNLSIALPAAGELIGFAA 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +   +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  + 
Sbjct: 234 GTRRTTSVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVAE-RNTPLRLKFTQ 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351
             + +     D  +A E++  + +   + + +N  YL + +      +V   E V F   
Sbjct: 293 GSVAIDAGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGL------KVFGTEFVRFSFT 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +     I G+D+     +D++ N  Y+LMP+R+
Sbjct: 347 DAPKPAVISGQDEPLA--EDDR-NYRYLLMPVRL 377


>gi|223038521|ref|ZP_03608815.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267]
 gi|222880378|gb|EEF15465.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267]
          Length = 355

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 83/345 (24%), Positives = 165/345 (47%), Gaps = 25/345 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + ++ +  ++ +    +E+K+   ++ H+ + A DG+L IKA+  EI +   + ++
Sbjct: 1   MKVAINKNALESIVTNTNPYLEKKDLSAITSHIFISAKDGILNIKATDHEIGLAYKL-SN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPE 115
           V +   G+ T +   L DI+R L+D       +E  L T  N   I   +S + L  +  
Sbjct: 60  VKIMDEGNATANGKKLLDIIRSLKD-------EEVTLETVNNYLYIKQKNSKYKLPMYKF 112

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            +FP+    E    FE+ + +L   +++   ++     ++ LNG    I +  + +  V 
Sbjct: 113 EDFPNFPAIENKNKFEIDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VG 170

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RL+V   +   Q     S+I+P+KA+ EI ++   K   +++   ++ +     + 
Sbjct: 171 TDTKRLSVFRFETPTQ--SEFSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANF 225

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK 294
               +LI+G FP+Y  VIP    + LR++   + + +  VSI+S S +I     ++S + 
Sbjct: 226 EFFTKLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISESTKIVFAPQTISFES 285

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           +    DN +    IE       E  + +    +YLL+ + +I  D
Sbjct: 286 IVE--DNSEAKTTIEFATGLEEEIYVGV--KNRYLLDFLQSIEED 326


>gi|268610502|ref|ZP_06144229.1| DNA polymerase III subunit beta [Ruminococcus flavefaciens FD-1]
          Length = 367

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 89/352 (25%), Positives = 163/352 (46%), Gaps = 28/352 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++++ E + +  R + +K+TIP    + ++ + G +E+     E+ I   I AS
Sbjct: 1   MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTISAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G   VSA L  +  R++  G +++F  +  +   +NIS   +     +   SEFP 
Sbjct: 61  TEGEGEFVVSARLFSEFTRRMS-GDEVTFDIDESM--VINISCSATECSFPAMSASEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   SF +  S LK+++  T +A +  E +  L G  F I  E+     VA DG R
Sbjct: 118 LPMVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDI--ENGSFNMVAIDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+     +    +    +VP+KA+ E+  ++    D    +  ++  I   I S+ +  
Sbjct: 176 LAIR--GEMTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM------SSVRIQ----AVKLS 289
           RL++G F NY+  IP     E+ VN  +   +++R S++      S +R +     VK+S
Sbjct: 234 RLLEGAFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKIS 293

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                 C T     +GK  ++++   +   + I FN K +LE +     D+V
Sbjct: 294 ------CRT----GIGKINDAISADISGETVTIGFNNKLILEALRAAEGDKV 335


>gi|153831483|ref|ZP_01984150.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39]
 gi|148873034|gb|EDL71169.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39]
          Length = 144

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 45/146 (30%), Positives = 85/146 (58%), Gaps = 14/146 (9%)

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 13  KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 72

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 73  NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 127

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 128 ENVDDDS---------AMYVVMPIRL 144


>gi|237753473|ref|ZP_04583953.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375740|gb|EEO25831.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 355

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 86/343 (25%), Positives = 172/343 (50%), Gaps = 23/343 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+  S +  +       +++K++  ++ H+ L+  +  L  KA+  E+ +  AI  S
Sbjct: 1   MNITISNSVLDNIFTSLQPFLDKKDSSQITSHIYLETRNNQLIAKATDFEMGLC-AITDS 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V++   G  TV+   + DI+++L++G  I+ +  NE    ++I    S+F L  F   EF
Sbjct: 60  VNILEEGIATVNGKQILDIIKRLKEG-DINLYTNNE---NLHIKQNKSSFKLPMFNAQEF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  E E +   E+ S  L   +++    +     +  LNG    I E       VATD 
Sbjct: 116 PTFPEFENLPKLEINSLELITSMKKIFPVIDMNNQKRELNGALLDIKEYSYNF--VATDT 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+ + D  +   K  S+I PR+A+ EI R+      ++++  +E  + +  ++    
Sbjct: 174 KRLAIIKFDKPS--GKNLSLIFPRRAITEIQRLFFD---NIELFYNEKNVIIKSQNYIFF 228

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL--- 295
             LI+G+FP+Y+ ++P     EL +  TN+   ++ + +++SV    VK++  + ++   
Sbjct: 229 SHLINGKFPDYEKILPKEMQTELNIPKTNI---IEGIKVINSVT-NDVKITFKAQEILFE 284

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            ++ DN +    IE + +  NE  ++I  N +++L+ +  I +
Sbjct: 285 SLSQDNSEAKTQIE-IELPINE-EIEIGINSRHILDFLTQIDT 325


>gi|120601057|ref|YP_965457.1| subunit beta [Desulfovibrio vulgaris DP4]
 gi|120561286|gb|ABM27030.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris DP4]
          Length = 384

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 36/357 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + D++E L  A  II  K        + L A DG L + A+   IE  G   A 
Sbjct: 1   MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNF--------Y 109
           V   G   V      D++RKL  G  +      +L  E N   I  G   +        +
Sbjct: 61  VTESGLAGVQGRAFVDLLRKLPAGEIVL-----QLDAEANVLRIEQGRRKYKLPVNDPVW 115

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEED 168
            Q+F  S+FP+  +   V+S       L+ L++R  F ++ E+    +  +F   + E  
Sbjct: 116 FQNF--SDFPA--DGAVVWS----GDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEGR 167

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSES 226
           ++ C +  +GH+ A+         AK+P+  ++V +K +GE+ + L + +  +++++SE 
Sbjct: 168 IEACGL--NGHQFAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEK 223

Query: 227 RIHLNIESL--SMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSV 281
           R+HL       + S+ L   ++P+Y N I     +    L V+      A+DR+ I +S 
Sbjct: 224 RMHLRTGDGRETFSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSD 283

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
             +     LS  ++ +T    D+G A ES+   Y+     I F  + L++I+++  S
Sbjct: 284 NNRCTYFDLSGGEVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS 340


>gi|241895508|ref|ZP_04782804.1| DNA-directed DNA polymerase III, beta chain [Weissella
           paramesenteroides ATCC 33313]
 gi|241871254|gb|EER75005.1| DNA-directed DNA polymerase III, beta chain [Weissella
           paramesenteroides ATCC 33313]
          Length = 376

 Score = 90.9 bits (224), Expect = 3e-16,   Method: Compositional matrix adjust.
 Identities = 82/358 (22%), Positives = 173/358 (48%), Gaps = 31/358 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  ++ + +  R I  + ++ +   + L  ++  L +  S  +I I   IPA+
Sbjct: 1   MEFTINRAAFIKAMNNVNRAISSRTSMTILKGIKLVLDETGLILTGSNTDISIEILIPAN 60

Query: 61  VDVC-------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            D         G+I + A    +IV++L      +F   N  G +  I+  ++ F +   
Sbjct: 61  DDEAKLQIMEPGAIVLPATFFSNIVKRLPGE---TFKLTNASGLQTKITSENAEFDINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E      L++  L  ++ +T  A++ +  +  L G+ F +   +L   A
Sbjct: 118 DANNYPHLPEVEVRNDLTLSADTLNEVIGQTVIAVSKQLSQPILTGVHFILASGNL--TA 175

Query: 174 VATDGHRLAVAEV-----DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           VATD HRLA   V     D+ A       IIVP  ++ ++  +L   ++ V V ++E+++
Sbjct: 176 VATDRHRLAQRSVAFDDSDVNA------DIIVPGTSLTQLQAMLDEVEN-VDVRVAENQV 228

Query: 229 HLNI-ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAV 286
              + E+ +   RL++G +P+   +IP      L +N  +L Q ++R +++S   R   +
Sbjct: 229 IFQLGENTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVI 288

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341
           + +++S+K  ++ ++P++G+  E   ++  E   D   I FN  Y+ E + +   +++
Sbjct: 289 QFAITSEKSLISSNSPEVGRVEEQ--IFAAETAGDDLTISFNPDYMREALRSFGDEQI 344


>gi|291548767|emb|CBL25029.1| DNA polymerase III, beta subunit [Ruminococcus torques L2-14]
          Length = 369

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 86/356 (24%), Positives = 174/356 (48%), Gaps = 35/356 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I  ++S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MRIICKKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVIKLTANDMELGIETTIDGI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +D  G I ++A +  +IVRKL D   +    E E   +  I+   + F + +    +F  
Sbjct: 61  IDSRGIIALNAKIFSEIVRKLPDNDVVI---ETESDNQAIITCEKAKFNIAAQSGDDFSY 117

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+ + E+++   E     LK +V +T F++A  +    + G  F I+ + L++  V+ D
Sbjct: 118 LPAIEREDFITISEFT---LKEVVRQTIFSIADNDTNKMMTGELFEIDNDVLRV--VSLD 172

Query: 178 GHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235
           GHR+++ ++++  + A  P  +IVP K + EI +I+  + D+ V++S +++ I    +  
Sbjct: 173 GHRISIRKIEL--KDAYQPRKVIVPGKTLQEISKIIGGEADAEVEISFTKNHIVFEFDRT 230

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RLI+GE+     ++    +  + VN   L   +DR +++              DK 
Sbjct: 231 LVVSRLIEGEYFRIDQMLSSDYETRVHVNKKELLDCIDRATLLIK----------EGDKK 280

Query: 296 CMTVD--NPDMGKAIESMNVYYNE---CPMD-----ICFNYKYLLEIIDNISSDEV 341
            + +D  N  M   I+S     +E   C  D     I FN K+L++ +  I  +EV
Sbjct: 281 PIIIDIKNESMELKIKSQIGSMDELIFCTKDGKDLMIGFNPKFLIDALRVIEDEEV 336


>gi|34556460|ref|NP_906275.1| DNA polymerase III subunit beta [Wolinella succinogenes DSM 1740]
 gi|34482174|emb|CAE09175.1| DNA POLYMERASE III, BETA CHAIN [Wolinella succinogenes]
          Length = 355

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 91/367 (24%), Positives = 175/367 (47%), Gaps = 25/367 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I + +S +  +L +    +E+K+   ++ HV  +A    L  +A+  EI +     + 
Sbjct: 1   MNIVIPKSSLENILTNLQPFLEKKDASQITSHVYFKAQGSELTFQATDYEIGLLAKTESV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV+   + DIVR+L++G +I+   + E    ++I    S+F L  F   EFP
Sbjct: 61  QIQKEGIATVNGKKILDIVRRLKEG-EITLQSQEEY---LHIKQEKSSFKLPMFNAEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    E +   E+ S  L   +++   A+     ++ LNG    I E       VATD  
Sbjct: 117 SFPSYEELPKIEINSMHLVQSMKKILPAIDNNNPKFELNGALLDIKEYSFNF--VATDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV + +    I K+ ++IVP+KA+ EI ++   +   V++  SE+ + L  ++     
Sbjct: 175 RLAVIKYE-NPSINKL-ALIVPKKAIVEIQKLFFEE---VELHYSETHLILKSKNYLFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
           +LI G++P+Y+ +IP      + +    + +A+  ++ +S+     +K++ + +++    
Sbjct: 230 KLISGKYPDYERIIPKETTHNMTLPKEKIIEAIKLINSLSN----DIKVTFTKEEILFES 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE----VVDDEVVFRLDS 352
           ++ +N +    +E       E  + I  N KYLL+ +  I + E    + +    F L S
Sbjct: 286 LSEENSEAKTQVEVETGITKELTLGI--NSKYLLDYLGQIDTSEFKIGINESNTPFILKS 343

Query: 353 SNSSVFI 359
            N S  I
Sbjct: 344 ENFSTVI 350


>gi|256389234|ref|YP_003110798.1| DNA polymerase III subunit beta [Catenulispora acidiphila DSM
           44928]
 gi|256355460|gb|ACU68957.1| DNA polymerase III, beta subunit [Catenulispora acidiphila DSM
           44928]
          Length = 396

 Score = 90.5 bits (223), Expect = 4e-16,   Method: Compositional matrix adjust.
 Identities = 98/407 (24%), Positives = 177/407 (43%), Gaps = 39/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-----LLEIKASGPEIEIT- 54
           MK  VER  + E +    R +  +   PV   ++ +A +G        +  SG + E++ 
Sbjct: 1   MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60

Query: 55  -GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
              I A V   G I +   LL DI + L +   + F  E   G++V +S G S F LQ+ 
Sbjct: 61  RAQIGADVTEPGRILIHGKLLADIAKSLPN-RPVEFSTE---GSKVLLSCGSSRFTLQTL 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  ++P+            AS  L   V +   A   ++    L GI   I  E  K+  
Sbjct: 117 PVEDYPALPTMPTATGAVTASG-LAGAVSQVAIAAGRDDTIPMLTGIRVEIEGE--KITL 173

Query: 174 VATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD  RLAV E+    +   M  + ++P K + +  + L+  D  V ++LS       +
Sbjct: 174 VATDRFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGDW-VSLALSGGDAGEGL 232

Query: 233 --------------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
                          S  M+ RL+ GEF  Y+++ P   +    V      +A  RVS++
Sbjct: 233 IGFESGEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVSLV 292

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           +  R   +KL+ +  ++ +     D  +A E+M+   +   + + FN  +LL+ +  I +
Sbjct: 293 AD-RTSPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVIDT 351

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 ++ F + +S  +V +     D+   ++ +    Y++MP+R+
Sbjct: 352 QYA---QLSFTV-ASKPAVLMGRPALDAPAQEEFR----YLMMPLRV 390


>gi|88854500|ref|ZP_01129167.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1]
 gi|88816308|gb|EAR26163.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1]
          Length = 381

 Score = 90.5 bits (223), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 80/347 (23%), Positives = 173/347 (49%), Gaps = 15/347 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R    E +  A +++ ++ T+P+   VL++A D  L + +   E+     I A 
Sbjct: 1   MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATDEGLTLSSFDYEVSARTQIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + VS  LL +I  +L + A + F  E+    ++ ++ G  +F L S P  E+P+
Sbjct: 61  VDEPGRVLVSGKLLAEIASRLPN-APVRFSTEDN---KITVACGTGHFTLSSMPVEEYPT 116

Query: 121 TKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  + V +  L + +    + +   A + +++   + G+   +++ ++ L  VATD +
Sbjct: 117 LPQISDQVGT--LKADLFSAAIAQVAVAASRDDVTPVITGVQLEVSQNNISL--VATDRY 172

Query: 180 RLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR--IHLNIES 234
           R+AV   E D  A   +  + +VP K + E+ +    S + SV ++ ++ R  I  + ++
Sbjct: 173 RVAVRDIEWDAGASGVESATALVPAKTLVEVGKTFGNSGEISVAITSTDERELIAFHADN 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +++  LI G FP  + + P + D    +N   L +AV RVS++   R  A++ + +++ 
Sbjct: 233 KTVTSLLIKGNFPPVRRLFPETVDNFAVMNTAELIEAVRRVSLVLE-REAALRFTFTTEG 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + +     +  +A E+++ +       +    ++L++ + ++ S+ V
Sbjct: 292 VTLEAIGSEQAQASETIDAFLTGDDTVVSLKPQFLIDGLSSVHSEFV 338


>gi|320095109|ref|ZP_08026818.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977976|gb|EFW09610.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 378

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 169/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A D  L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIRAADDELTLSSFDYEVSANSKIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + VS  LL DI + L         +    G +VN+  G S+F L   P  E+P 
Sbjct: 61  VDEAGEVLVSGRLLADISKSLPSKPVTVELE----GQKVNLVCGSSHFTLAVMPLDEYPL 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +     + +    L   V +   A + ++    L G+   +    +    +ATD +R
Sbjct: 117 LPAQPAAIGY-IDPQTLAQAVAQVSIAASRDDTLPLLAGVCTELTGSTITF--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           LA+ E+D       +  + V +  + + +    +  + V+V LS        S I  +  
Sbjct: 174 LAMRELDWQPTDTSIEEVTVIKARILQDVAKSMTSGTKVEVGLSGQSQPGASSLIGFSAS 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               +  L+DG++P  + + P +   +   +   L +AV R+S+++  R  +V+L+ S  
Sbjct: 234 GRHTTSTLMDGDYPAVRRLFPETTPIQAVCDRHALLEAVKRMSLVAE-RNTSVRLAFSEG 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +     +  +A E++    +   +   FN ++L+E +  + +     D V F    +
Sbjct: 293 QVVLEAGQGENAQASEAIEATLHGDDISTAFNPQFLIEGLSVLDT-----DYVRFGFTHA 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384
                I G+    K   + +V  F Y+LMP+R
Sbjct: 348 TKPAVITGQ----KKPDEGEVTQFRYLLMPIR 375


>gi|46578419|ref|YP_009227.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447830|gb|AAS94486.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232351|gb|ADP85205.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris RCH1]
          Length = 384

 Score = 90.1 bits (222), Expect = 5e-16,   Method: Compositional matrix adjust.
 Identities = 90/357 (25%), Positives = 162/357 (45%), Gaps = 36/357 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + D++E L  A  II  K        + L A DG L + A+   IE  G   A 
Sbjct: 1   MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNF--------Y 109
           V   G   V      D++RKL  G  +      +L  E N   I  G   +        +
Sbjct: 61  VTEPGLAGVQGRAFVDLLRKLPAGEIVL-----QLDAEANVLRIEQGRRKYKLPVNDPVW 115

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEED 168
            Q+F  S+FP+  +   V+S       L+ L++R  F ++ E+    +  +F   + E  
Sbjct: 116 FQNF--SDFPA--DGAVVWS----GDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEGR 167

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSES 226
           ++ C +  +GH+ A+         AK+P+  ++V +K +GE+ + L + +  +++++SE 
Sbjct: 168 IEACGL--NGHQFAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEK 223

Query: 227 RIHLNIESL--SMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSV 281
           R+HL       + S+ L   ++P+Y N I     +    L V+      A+DR+ I +S 
Sbjct: 224 RMHLRTGDGRETFSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSD 283

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
             +     LS  ++ +T    D+G A ES+   Y+     I F  + L++I+++  S
Sbjct: 284 NNRCTYFDLSGGEVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS 340


>gi|119953226|ref|YP_945435.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135]
 gi|119861997|gb|AAX17765.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135]
          Length = 386

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 79/334 (23%), Positives = 157/334 (47%), Gaps = 20/334 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           +  A  II  +N   +   +LL+  +  L+IKA+   I     IP        + ++A  
Sbjct: 17  IDKAKSIILNRNINDIWSAILLEVKNSNLKIKATDRNIFFESTIPIVSAENFKVLINASN 76

Query: 74  LYDIVRKLQ--DGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFPSTK-------- 122
             D V+ L   +  +I F + E++L       + + NF      E  F S +        
Sbjct: 77  FSDAVKALNLYNELKIKFIEDESKLSIIGESENKNDNFINDHLSEPTFSSEEIEIYNYDI 136

Query: 123 -EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            EE Y  + EL     K ++ +  F+ + +E +  LNGI+F   +++  L  V+T+ HRL
Sbjct: 137 NEEIYNLTVELTQREFKKIINKVSFSASHDESKNVLNGIYF-TKDKNSALTFVSTNSHRL 195

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           +V + D++ +  +  + IVP K V  +LR +   +  +K+ +S+ + ++   +  +   L
Sbjct: 196 SVYKTDLIFE--EDINFIVPVKMVN-LLRQMMVGEGIIKLKISDKKFYVEFNNYKIVCSL 252

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           I+G +P+Y+++IP     +  ++ + L+  + RVS  +  R + V L+ + ++L +  ++
Sbjct: 253 INGNYPDYESIIPNEQQNKALIDVSILKDRLSRVSSYTDKRSKKVILNFAGNQLRLMAED 312

Query: 302 PDMGKA----IESMNVYYNECPMDICFNYKYLLE 331
           P  G+     ++S N  Y      +  N  Y  E
Sbjct: 313 PITGRKGEFFVQSPNYDYEGSEEVVAINSAYFTE 346


>gi|161598680|ref|NP_938411.2| DNA polymerase III subunit beta [Corynebacterium diphtheriae NCTC
           13129]
          Length = 395

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 175/397 (44%), Gaps = 29/397 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           VE+ D+   +    R +  K T PV   V++ A+D  LE      E+     I A V   
Sbjct: 10  VEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVRQP 69

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I V+  L+ DI+  L +   I  F E   GT+V +  G S F L   P  E+P   + 
Sbjct: 70  GRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLPQL 125

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             V    +  ++  + V +   A   +E    L GI   I+ E++ L   ATD  RLA+ 
Sbjct: 126 PAVTG-AIDPNLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTLT--ATDRFRLALR 182

Query: 185 EVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235
                 A       +++P K + +  R L S  +  V++++       +E    ++I++ 
Sbjct: 183 RFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHIDNR 242

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + R++D +FPN   ++P  ++    V  + L  A+ RV++++    Q +++  + D++
Sbjct: 243 QTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVAERNAQ-IRMQFTRDEV 301

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353
            ++    D G A ES+   +  +    I FN  YL + +  I +       VVF   + S
Sbjct: 302 ILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRT-----SRVVFGFTEPS 356

Query: 354 NSSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385
             ++ I   +   + + D           Y+LMP+R+
Sbjct: 357 RPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 393


>gi|226326147|ref|ZP_03801665.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758]
 gi|225205689|gb|EEG88043.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758]
          Length = 369

 Score = 89.7 bits (221), Expect = 6e-16,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 171/356 (48%), Gaps = 33/356 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD+++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIRCLKSDLVKGVSIVSKAVPTKTTMPILECILIDATTDIIKLTANDMELGIETVIRGQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G I + A +  DIVRKL D   +    E+ +  +  I+   + F +      +F  
Sbjct: 61  IDEKGMIALDARIFSDIVRKLPDNEIVI---ESGVNFQTLITCEKAKFNISGKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F +N + LK+  V+ DGHR
Sbjct: 118 LPYIERENPVSISQFTLKEVIRQTIFSIADNDSNKLMTGELFDMNGDILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  +  +   I+VP K + E+ +ILS + DS V++  + + I    +   +  
Sbjct: 176 ISIRKIEL-KESYEPKKIVVPGKTLIEVSKILSGEADSEVRLYFTANHIVFEFDDTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS----------IMSSVRIQAVKLS 289
           RLI+GE+   + ++    + ++R+N   L   +DR +          I+ +++ + ++L 
Sbjct: 235 RLIEGEYFRIEQMLSNDYETKVRINKRELLNCIDRATLLVKEGDKKPIIINIQDEMMELK 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           + S+K          G   E + +      + I FN K+L++ +       V+DDE
Sbjct: 295 IKSEK----------GTMDEEIMITKEGKDLLIGFNPKFLIDAL------RVIDDE 334


>gi|312792285|ref|YP_004025208.1| DNA polymerase III subunit beta [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179425|gb|ADQ39595.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 368

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 168/357 (47%), Gaps = 27/357 (7%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           VL++A D ++    +  ++++     A +   G+  V A L  DIV+KL  G ++   +E
Sbjct: 33  VLIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPSG-EVEVIRE 90

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           +    EV I      F L +    +FP  +++      E  +S   + V++  FA + +E
Sbjct: 91  D---NEVKIRSQKIEFRLPTLDPLDFPKMEKKPSESFCEFVASEFVDGVDKVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   E+D  +  V  DGHRLA+ ++  +A +    S IVP + + +I +I+
Sbjct: 148 TRPTFTGVLFEKEEDDF-VNLVGMDGHRLAICKIKPIA-VEGSFSKIVPAENLDDITKIV 205

Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             +++  V+VS  E++    I S ++ + LI G+F +Y+  IP     ++ ++   L   
Sbjct: 206 DIEEAEKVRVSFFENQATFEIGSTTVILTLITGKFFDYKGAIPTEYSTKISISSDVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           ++R SI+S      IQAV    +     +   + D G+  E +        + + FN KY
Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMMFTVRSMSAD-GRYEEDVLCSVEGKDIRVGFNVKY 324

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            L+++  +      D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 325 FLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366


>gi|1321905|emb|CAA63258.1| dnaN [Mycobacterium tuberculosis H37Rv]
          Length = 399

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 91/384 (23%), Positives = 168/384 (43%), Gaps = 38/384 (9%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +  +  +PV   VLL  +D  L I     E+     + A +   GS+ VS  LL DI R 
Sbjct: 33  LPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIVSPGSVLVSGRLLSDITRA 92

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS--TKEEEYVYSFELASSVLK 138
           L +   +    E   G  V ++ G++ F L + P  ++P+  T  EE   +  L + +  
Sbjct: 93  LPN-KPVDVHVE---GNRVALTCGNARFSLPTMPVEDYPTLPTLPEE---TGLLPAELFA 145

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PS 197
             + +   A   ++    L G    I  E L     ATD  RLAV E++  A    +  +
Sbjct: 146 EAISQVAIAAGRDDTLPMLTG----IRVESLVRRGCATD-SRLAVRELEWSASSPDIEAA 200

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLIDGEFPNYQ 250
           ++VP K + E  +      S V++SL        +  + ++      + RL+D EFP ++
Sbjct: 201 VLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNGKRSTTRLLDAEFPKFR 259

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
            ++P  +     ++   L +A+  V++++  R   V++  +   + ++    D+G+A E 
Sbjct: 260 QLLPTEHTAVATMDVAELIEAIKLVALVAD-RGAQVRMEFADGSVRLSAGADDVGRAEED 318

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR---GKDKDSK 367
           + V Y   P+ I FN  YL + + ++ S     + V F   ++     +R   G D+   
Sbjct: 319 LVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAGKPALLRPVSGDDRPVA 373

Query: 368 NNKDN------KVNAFYVLMPMRI 385
               N        +  Y+LMP+R+
Sbjct: 374 GLNGNGPFPAVSTDYVYLLMPVRL 397


>gi|300857419|ref|YP_003782402.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300684873|gb|ADK27795.1| DNA polymerase III beta subunit [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205159|gb|ADL09501.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           C231]
 gi|302329717|gb|ADL19911.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           1002]
 gi|308275400|gb|ADO25299.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           I19]
          Length = 395

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 29/397 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           VE+ D+   +    R +  K T PV   V++ A+D  LE      EI     I A V   
Sbjct: 10  VEKEDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEISTKVRISADVSQP 69

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I V+  LL DI+  L     +  F E   G++  +  G S F L   P  E+P   + 
Sbjct: 70  GRIAVAGKLLSDIIGTLP-AKPVEIFVE---GSQALVVCGSSRFELPLIPLDEYPILPKL 125

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
                  +   +  + V +   A   ++    L GI   I+ ED+ L   ATD  RLA+ 
Sbjct: 126 PAATG-AIDPKLFADAVLQVAAAAGKDDTLPMLTGIHMEIDGEDVTLT--ATDRFRLALR 182

Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235
                  +    + +++P K + +  R L    +  V++++       SE    ++I+S 
Sbjct: 183 RFQWTPAVPDAKADLLIPAKNLSDNARSLDQNSTDPVEIAVGAGESIGSEGLFGIHIDSR 242

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + R++D +FPN   ++P  +     V  + L  A+ RV++++    Q ++L  S +++
Sbjct: 243 QTTTRMLDADFPNVNPLLPKVHKSMASVEISALADAIRRVALVAERNAQ-IRLQFSKNEV 301

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353
            ++    D G A ES+   Y  +    I FN  YL + +  I +     + VVF   + S
Sbjct: 302 ILSAGGSDAGHAEESVPCAYTGDEDFLIAFNSGYLRDGLSVIKT-----NRVVFGFTEPS 356

Query: 354 NSSVFIRGKDKDSKNNKDNK-----VNAFYVLMPMRI 385
             ++ I   ++  + + D        +  Y+LMP+R+
Sbjct: 357 RPAIMIPEPEELPEADSDGTFPTPNTDFTYLLMPVRL 393


>gi|283778831|ref|YP_003369586.1| DNA polymerase III subunit beta [Pirellula staleyi DSM 6068]
 gi|283437284|gb|ADB15726.1| DNA polymerase III, beta subunit [Pirellula staleyi DSM 6068]
          Length = 372

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 73/299 (24%), Positives = 139/299 (46%), Gaps = 47/299 (15%)

Query: 103 HGD-SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161
            GD S F LQS    EFP     E      +++++LK ++ RT FA   E  RY L G+ 
Sbjct: 99  RGDRSEFRLQSEDPEEFPIVALFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVL 158

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVA----------QIAKMPSIIVPRKAVGEILRI 211
             ++ +  KL AV TDG RLA  E    A           I + PS+ +  +A+ E    
Sbjct: 159 IELHGD--KLIAVGTDGRRLAKMEGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISE---- 212

Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT----- 266
               D++V+++   S + L  E  +   RL++G FP +++V P   D  ++++ T     
Sbjct: 213 ---NDNTVQLAARSSDVLLKTERATFYSRLVEGRFPRWRDVFPRRQDA-IKIDLTVGPFF 268

Query: 267 -NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
             LRQA    ++++S   + +  + +   L ++    D G++   M + Y    + +  +
Sbjct: 269 SVLRQA----AVVTSQDSRGIDFTFADGTLTLSAVTSDAGQSRVEMPISYTGSAITVTLD 324

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPM 383
           ++++ + +  +S ++     +V  ++S+ S+      D           +A+ YV+MP+
Sbjct: 325 HRFVADFLKVLSPEQT----IVLEIESAESAAVFTADD-----------SAYGYVVMPL 368


>gi|325265441|ref|ZP_08132164.1| DNA polymerase III, beta subunit [Clostridium sp. D5]
 gi|324029299|gb|EGB90591.1| DNA polymerase III, beta subunit [Clostridium sp. D5]
          Length = 384

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 89/396 (22%), Positives = 189/396 (47%), Gaps = 46/396 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A+  ++++ A+  E+ I   I   
Sbjct: 16  MKIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVVKLTANDMELGIETRIEGD 75

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I ++A +  +IVRKL D + ++   +++  T +       N   QS  + S  P
Sbjct: 76  IVERGIIALNARIFSEIVRKLPD-SDVTIETDSDNQTLITCEKAKFNIAAQSGEDFSYLP 134

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++E+Y+   E     LK ++ +T F++A  +    + G  F I  ED  L  V+ DGH
Sbjct: 135 VIEKEDYITVSEFT---LKEVIRQTIFSIADNDTNKMMTGELFEI--EDSILKVVSLDGH 189

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           R+++ ++++    A    +IVP K + EI +I+  + ++ V +S +++ I    +   + 
Sbjct: 190 RISIRKIELKEDYAP-KKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTVVV 248

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS----------IMSSVRIQAVKL 288
            RLI+G++     ++    + ++R+N   L   +DR +          I+  +R ++++L
Sbjct: 249 SRLIEGDYFKIDQMLSSDYETKVRINKKELLDCIDRATLLIKEGDKKPIIIDIRDESMEL 308

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV- 347
            + S           +G   E + +      + I FN K++++ +       V+DDE V 
Sbjct: 309 KIKS----------QIGSMDEEIFITKEGKDLMIGFNPKFMIDAL------RVIDDEEVD 352

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
               ++ +  FI          KD K +  Y+++P+
Sbjct: 353 LYYMNAKAPCFI----------KDEKQSYIYLILPV 378


>gi|312877903|ref|ZP_07737848.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795329|gb|EFR11713.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 368

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 87/357 (24%), Positives = 168/357 (47%), Gaps = 27/357 (7%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           VL++A D ++    +  ++++     A +   G+  V A L  DIV+KL  G ++   +E
Sbjct: 33  VLIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPSG-EVEVVRE 90

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           +    EV I      F L +    +FP  +++      E  +S   + V++  FA + +E
Sbjct: 91  D---NEVKIRSQKIEFRLPTLDPLDFPKMEKKPSESFCEFVASEFVDGVDKVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   E+D  +  V  DGHRLA+ ++  +A +    S IVP + + +I +I+
Sbjct: 148 TRPTFTGVLFEKEEDDF-VNLVGMDGHRLAICKIKPIA-VEGSFSKIVPAENLDDITKIV 205

Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             +++  V+VS  E++    I S ++ + LI G+F +Y+  IP     ++ ++   L   
Sbjct: 206 DIEEAEKVRVSFFENQATFEIGSTTVILTLITGKFFDYKGAIPTEYSTKISISSDVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           ++R SI+S      IQAV    +     +   + D G+  E +        + + FN KY
Sbjct: 266 LERASIVSKDEKTNIQAVIFETNGMMFTVRSMSAD-GRYEEDVLCSVEGKDIRVGFNVKY 324

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            L+++  +      D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 325 FLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366


>gi|289705897|ref|ZP_06502276.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58]
 gi|289557382|gb|EFD50694.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58]
          Length = 371

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 95/390 (24%), Positives = 178/390 (45%), Gaps = 25/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + + +  A R +  +  +PV   +L+ A  G++ I +   E      I A 
Sbjct: 1   MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
           V+  G + VS  LL DIVR L   AQ++     EL G +V ++   S F L + P  ++P
Sbjct: 61  VETAGQVLVSGRLLNDIVRSLPQ-AQVTV----ELDGGKVLVTCRSSRFALATMPVGDYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E     +  +  +   + V +   A + ++    L  +   I  + +    +ATD +
Sbjct: 116 ALPELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTMTF--LATDRY 172

Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+ E+    A  +   S+++  + + E+ + L S  D  + +  +   +         
Sbjct: 173 RLAMKEIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DGE+P  +++ P S+  +  V+   L +A  RV++++  R  A+++  +  ++ +
Sbjct: 233 TSVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAE-RNTALRMVFTDGQVTL 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVVFRLDSSNSS 356
                D   A ES+        + + FN  YL E +       VVD  +V F   S+   
Sbjct: 292 DAGTGDDASANESVPCTLEGEDITVAFNPSYLSEGL------AVVDQPQVRFAFTSAPKP 345

Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
             + G      N +D  V+ + Y++MP+RI
Sbjct: 346 ALLTG-----VNQEDGVVSDYRYLVMPVRI 370


>gi|256831257|ref|YP_003159984.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603]
 gi|256684788|gb|ACV07681.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603]
          Length = 376

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 92/389 (23%), Positives = 181/389 (46%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +   PV   V ++A  +G++++ +   E+   G IPA
Sbjct: 1   MKFRVERDVLTEAVTWTARTLPARPPAPVLSGVRIEATQEGVVKLASFDYEVSARGEIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G+I VS  LL +I + L     + F  +   GT+V++  G S F L + P  E+P
Sbjct: 61  EVTEPGTILVSGRLLAEIAKALPH-KPVDFTVD---GTKVSVVCGASRFSLLTMPVEEYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      +    +  S L   V +   A + ++    L G+   I  E  K+  +ATD +
Sbjct: 117 TLPTMPELTGV-VDGSELSAAVSQVTVAASRDDTLPLLTGVRIEIEGE--KVTLLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSM 237
           RLA+ E+        M ++ + R + + ++ + L    D +V +S+ E    +  E+   
Sbjct: 174 RLALREMTWRPSAPDMSTVALVRARTLNDVSKSLGPVGDVNVALSVGEGVDLIGFEAGGR 233

Query: 238 SVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
                L+DG++P+ + + P        V    L  A  RV++++  R   ++L+ S  ++
Sbjct: 234 QTTSLLVDGDYPHVRRLFPDETPIHAVVATQPLIDAARRVALVAE-RNTPIRLNFSEGQV 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D  +A E +        + + FN ++LL+ ++ + +D V       RL  ++ 
Sbjct: 293 VLDAGQGDDAQASEVLESTLVGEDISVAFNPQFLLDGLNALGTDFV-------RLSFTHP 345

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  +    ++S + +D+K +  Y+L+P+R
Sbjct: 346 NKPVEFTGQESLDGEDSK-HYRYLLVPIR 373


>gi|38198902|emb|CAE48513.1| DNA polymerase III, beta chain [Corynebacterium diphtheriae]
          Length = 405

 Score = 89.7 bits (221), Expect = 7e-16,   Method: Compositional matrix adjust.
 Identities = 97/397 (24%), Positives = 175/397 (44%), Gaps = 29/397 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           VE+ D+   +    R +  K T PV   V++ A+D  LE      E+     I A V   
Sbjct: 20  VEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVRQP 79

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I V+  L+ DI+  L +   I  F E   GT+V +  G S F L   P  E+P   + 
Sbjct: 80  GRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLPQL 135

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             V    +  ++  + V +   A   +E    L GI   I+ E++ L   ATD  RLA+ 
Sbjct: 136 PAVTG-AIDPNLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTLT--ATDRFRLALR 192

Query: 185 EVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSL-------SESRIHLNIESL 235
                 A       +++P K + +  R L S  +  V++++       +E    ++I++ 
Sbjct: 193 RFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHIDNR 252

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + R++D +FPN   ++P  ++    V  + L  A+ RV++++    Q +++  + D++
Sbjct: 253 QTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVAERNAQ-IRMQFTRDEV 311

Query: 296 CMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353
            ++    D G A ES+   +  +    I FN  YL + +  I +       VVF   + S
Sbjct: 312 ILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRT-----SRVVFGFTEPS 366

Query: 354 NSSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385
             ++ I   +   + + D           Y+LMP+R+
Sbjct: 367 RPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 403


>gi|323486748|ref|ZP_08092067.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum
           WAL-14163]
 gi|323694890|ref|ZP_08109040.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323399887|gb|EGA92266.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum
           WAL-14163]
 gi|323500980|gb|EGB16892.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 372

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 97/400 (24%), Positives = 180/400 (45%), Gaps = 52/400 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++  + +++  +    + +  K T+P+   +L+ A    +++  +  E+ I   +   
Sbjct: 1   MKLSFNKDNLMNGINIVLKAVSSKTTMPILECILIDATSNEIKLTGNDMELGIETKVEGM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I + A LL DI+RKL     +   + +E    V I+   S F +Q     EF  
Sbjct: 61  ILERGKIALDAKLLSDIIRKLSGDESLITIESDEKFNTV-ITCEKSVFKIQGKDGEEFSY 119

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P  + + Y+    L+   LK ++ +T F+ +  +    + G    +N+  LK+  V+ D
Sbjct: 120 IPHIERDNYIC---LSQFTLKEVIRQTLFSTSPNDSNKMMTGELIEVNDNILKV--VSLD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
           GHR+++ +V +  Q   +  +IVP K +GEI +IL+   +S V +  + + I    +   
Sbjct: 175 GHRMSIRKVILKDQYHDI-KVIVPGKTLGEISKILNGDNESEVLIFFTSNHIMFEFDDTV 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLI+GE+     ++    D ++ VN      +++R SI+  +R         +DK  
Sbjct: 234 VVSRLIEGEYFRINQMLSSDYDTKVTVNRREFMDSIERASIL--IR--------ENDKKP 283

Query: 297 MTVDNPDMG------KAIESMNVYYNECPMD----ICFNYKYL---LEIIDNISSDEVVD 343
           + ++  D G       A  +MN   N         I FN K+L   L IID        D
Sbjct: 284 IIINITDEGMELKLNSAFGTMNAEINITKFGKDLMIGFNPKFLVDALRIID--------D 335

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +EV   + +  S  FI          KD + N  Y+++P+
Sbjct: 336 EEVTLYMMNPKSPCFI----------KDEEENYIYLILPV 365


>gi|289450447|ref|YP_003474444.1| DNA polymerase III subunit beta [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184994|gb|ADC91419.1| DNA polymerase III, beta subunit [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 367

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 90/388 (23%), Positives = 188/388 (48%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T +++ +++ + +  + I  + T+P+   +L  A + L+ +     E  I   +PA 
Sbjct: 1   MKFTCDKNLLIDAITNVQKAISTRTTMPILEGILFDAENNLI-LTGYDMETAIKYTMPAK 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +++ ++ +IV+K      ISF  EN     V I  G S F L      ++P+
Sbjct: 60  IEEQGKVVLNSKIIGEIVKKAA-AETISFDVENNYS--VLIQSGLSKFKLHGLSAEDYPA 116

Query: 121 TKEEEYVYSFE--LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             E +     E  L  + L +L++++ F+++ +E R  LNG F  + +E+  +  V  DG
Sbjct: 117 LVENDSNVKQEITLPQNELYSLIKKSIFSVSLDEKRPNLNGCF--LKKENKVIEMVGIDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            R++VA+     Q     S I+P K +  +L +L  +  ++ +S   +++  +    +M 
Sbjct: 175 FRVSVADFYDANQDEVDISFIIPHKTLRNLLSMLE-ESGNILISKKSNQLIFDFGRKTMI 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I   + NY+N+ P  +   + +   +L  +++R  +MSS       +++  D   M 
Sbjct: 234 SRIISENYINYRNIFPEQSITNIELKTKDLLGSIERSILMSSPDDHRYPVTIKCDSETME 293

Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356
           + +  + G   E ++V +    +D+  N  YL++ +      +V+DDE +    + S+  
Sbjct: 294 ISSINNRGDFHEIIDVTFKGKAVDVDINPYYLIDAL------KVIDDEKIKVSFNESSGP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V I     +  NNK    N  ++++P+R
Sbjct: 348 VII-----EPINNK----NFMFLILPLR 366


>gi|229829519|ref|ZP_04455588.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM
           14600]
 gi|229791950|gb|EEP28064.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score = 89.4 bits (220), Expect = 8e-16,   Method: Compositional matrix adjust.
 Identities = 91/397 (22%), Positives = 189/397 (47%), Gaps = 48/397 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  ++++++ +    + +  + T+P+   +L+ A+   +++ A+  EI I   I   
Sbjct: 1   MKITCSQAELVKGVNIVTKAVPTRTTMPILQCILIDASANQIKLMANDMEIGIETIIDGR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           ++  G I + A +  +IV+KL D   +    E+    + NIS   +NF +       F  
Sbjct: 61  IEERGIIALDASIFSNIVKKLPDSQVVITTGES---FQANISCEKANFNINGMDGENFAY 117

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P     E V   E     LK ++ +T F++A  E    + G  F I+   +++  V+ D
Sbjct: 118 LPVIPRNEPVVISEFT---LKEVIRQTIFSIADNENNKLMAGELFEIHGSRMRV--VSLD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236
           GHR+++  +++ ++      ++VP K + EI +I+  S + +V + ++E+ I       +
Sbjct: 173 GHRISIRNIELKSECPDY-KVVVPGKTLNEISKIIPGSYEENVMIYITENHIIFEFGQTT 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-- 294
           +  RLIDGE+   + ++    + ++R++   L + +DR +++ +            DK  
Sbjct: 232 VVSRLIDGEYFKIEQMLSSDYETKIRISKRELLECIDRATLLVN----------PGDKKP 281

Query: 295 LCMTVDNPDMGKAIESM------NVYYNECPMDIC--FNYKYLLEIIDNISSDEVVDDEV 346
           + M V + +M   I+S       N+  ++   DI   FN K+ ++ + NI      D+E+
Sbjct: 282 IIMNVTDGNMELNIQSFIGSMNENIAIDKEGRDILIGFNPKFFIDALRNID-----DEEI 336

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
              + +  +  FI  KD D+K          Y+++P+
Sbjct: 337 TIYMVNPKAPCFI--KDDDNK--------FLYLILPV 363


>gi|213421124|ref|ZP_03354190.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 157

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 53/166 (31%), Positives = 94/166 (56%), Gaps = 14/166 (8%)

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +V +  + I  ++     + +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S
Sbjct: 6   RVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 65

Query: 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           + + + V+L +S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++++ +   
Sbjct: 66  NEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC- 124

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + V   L  S SSV I  +D  S+       +A YV+MPMR+
Sbjct: 125 ----ETVRIMLTDSVSSVQI--EDAASQ-------SAAYVVMPMRL 157


>gi|256545951|ref|ZP_05473306.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC
           51170]
 gi|256398373|gb|EEU11995.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC
           51170]
          Length = 375

 Score = 89.4 bits (220), Expect = 9e-16,   Method: Compositional matrix adjust.
 Identities = 85/338 (25%), Positives = 160/338 (47%), Gaps = 21/338 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++ D+   +  A + + RK  I +   +  +A +  L + +S  EI I       
Sbjct: 6   MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDTLTLTSSDGEISIVTKANCK 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE--- 117
           V   G + ++A+++ +IVRKL D       K     +++ I    SNF + +F   E   
Sbjct: 66  VVQEGEMAINANIIANIVRKLPD----ELIKIELEDSKIKIKCNGSNFNILAFDYYEKKN 121

Query: 118 --FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              PS      V   E+ +  LK  + +T FA + +E +  L GI F +  +D  L  VA
Sbjct: 122 FSIPS------VDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFEL--KDGYLNFVA 173

Query: 176 TDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            DG+R+A+ ++ +          +I+PRK++ E  RI+   +   K+   +  I      
Sbjct: 174 LDGYRVALKKLKLSYPSSMDKARLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
            +M  ++ID  + +Y N+I   +   L V+   L  +++R  ++++  R   +K+++  D
Sbjct: 233 TTMYCKVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           K C+   N ++G   E + +      + I FN +YL+E
Sbjct: 293 K-CLIESNSEIGDLKEVLQIQKEGDDVKIAFNARYLIE 329


>gi|119714274|ref|YP_921239.1| DNA polymerase III subunit beta [Nocardioides sp. JS614]
 gi|119534935|gb|ABL79552.1| DNA polymerase III, beta subunit [Nocardioides sp. JS614]
          Length = 408

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 177/400 (44%), Gaps = 38/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  VER  + + +  A R +  + ++PV   +L++A+D  L +     E      + A 
Sbjct: 30  VKFRVERDVLADAVAWAARSLPVRPSVPVLAGLLVEASDDGLVLSTFDYETSARATLTAE 89

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V   G   VS  LL DI R L         K  E+   G  V+++ G + F LQ+ P  +
Sbjct: 90  VSDEGQALVSGRLLADICRSLP-------AKPVEMVLDGARVSLTCGSARFSLQTMPVDD 142

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS           + S    + V +   A   +++   L G+   I+   + L  +ATD
Sbjct: 143 YPSLPSMPAATG-TVQSEAFAHAVAQAVTAAGRDDMLPVLTGVRIEIDGSTISL--LATD 199

Query: 178 GHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL+  E++   +   +  + +VP + +G+  + L+     V ++L+ +     I    
Sbjct: 200 RFRLSHRELEWSPRTPDESAAALVPARVLGDTAKSLTGG-GEVTIALATTGSGEGIIGFE 258

Query: 237 ---------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
                     + RL+DGEFP  +++ P  +     V+   L ++V RV++++  R  AV+
Sbjct: 259 GHGPGGLRRTTTRLLDGEFPKVRSLFPNEHQTTALVDKAALVESVKRVALVAE-RNTAVQ 317

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L+ S   L +   + D  +A ES+    +   +   FN ++LL+ +  I       D+ V
Sbjct: 318 LAFSDGVLTLDAGSGDEAQASESIEATIDGEDITTGFNPQFLLDGLTAI-------DQPV 370

Query: 348 FRLDSSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             L  + +S  V I G    + +  D   +  Y+LMP R+
Sbjct: 371 VELAFTQASKPVVISG----AVDGDDTDSSFRYLLMPRRL 406


>gi|269791621|ref|YP_003316525.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099256|gb|ACZ18243.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 379

 Score = 89.4 bits (220), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/342 (23%), Positives = 167/342 (48%), Gaps = 15/342 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+ +E+   +     A R     ++   S  V+++++ G +E+ A+  +  +   +   
Sbjct: 1   MKLNIEKGPFIRAWNMAERCAGASSSG-ASSSVMIRSSAGRVELFATDMKTSLRCPVQGV 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   +   +L D+ +K  D    SF    E G    +S G S +   ++  SEFP
Sbjct: 60  QSDLDGEALLPVKVLGDLFKKCPD---PSFTINLEEGRGTMVS-GRSRYRFSTYDVSEFP 115

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATD 177
                     F  + +  L+N +     A +T +E   YL+ ++   ++  L++  V+TD
Sbjct: 116 KFPSSASAAQFGTVKAQDLRNAISEGGIAASTSDEYPQYLSCVYLQGDQGALRI--VSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL 235
             RLA ++  +    ++  S+++P +A+ E+ R+LS   +D  V++ L +++ +   +  
Sbjct: 174 SRRLAYSKCPMEGSSSE--SMLLPMRAIRELDRMLSGLQEDGDVRILLDQAQAYFISDDF 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             ++R +DG+FP Y+ +IP S    + V+ + +  A++R+ ++     + V ++LS    
Sbjct: 232 EFAIRRVDGKFPQYERIIPKSCTTFMEVSRSQMIGALERLDLVVRDFNKMVAVNLSPGGS 291

Query: 296 C-MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
           C +   +P+ G A+E +       P+ I FN K+LL+ +  +
Sbjct: 292 CTLRSRSPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDGVKGL 333


>gi|291561643|emb|CBL40442.1| DNA polymerase III, beta subunit [butyrate-producing bacterium
           SS3/4]
          Length = 372

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 85/371 (22%), Positives = 177/371 (47%), Gaps = 22/371 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T +++ +L  +    + +  K T+P+   +L+ A+   +++ A+  E+ I   +   
Sbjct: 1   MKLTFQKTALLNGINIVLKAVPSKTTMPILECILIDASTDEIKLTANDMELGIETKVEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I RKL D   +   + +E    V I+  +S F +Q     EF  
Sbjct: 61  ILEKGKIALDAKLFSEIARKLSDSDSLVTIESDEKFNTV-ITCENSVFKIQGKDGEEFSY 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  L+   LK ++ +T F+++  +    + G  F +N + L++  V+ DGHR
Sbjct: 120 LPYIERNKNITLSQFSLKEVIRQTIFSISVNDSNKMMTGELFEVNGDTLRV--VSLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ ++    +   +IVP K + EI +IL+   +  V++    + I    +   +  
Sbjct: 178 MAIRKI-VLKDEYESTKVIVPGKTLNEISKILTGDNEKEVQIFFGANHILFEFDDTIVVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDKLC 296
           RLI+GE+     ++      ++ +N  +   +++R SI+  +R    + + L++   K+ 
Sbjct: 237 RLIEGEYFKVDQMLSSDYATKVSLNKKDFLDSIERASIL--IRENDKKPIILNIEDSKMG 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYL---LEIIDNISSDEVVDDEVVFRLDSS 353
           + + N   G     + ++     + I FN K+L   L IID        D+EV   + ++
Sbjct: 295 LKL-NSSFGTMNAEILIHKTGQDLMIGFNPKFLSDALRIID--------DEEVTLYMMNA 345

Query: 354 NSSVFIRGKDK 364
            S  FI+ +D+
Sbjct: 346 KSPCFIKDEDE 356


>gi|461954|sp|P34029|DPO3B_SPICI RecName: Full=DNA polymerase III subunit beta
 gi|49347|emb|CAA79522.1| DnaN protein [Spiroplasma citri]
 gi|745457|prf||2016285B DNA polymerase III:SUBUNIT=beta
          Length = 363

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 160/348 (45%), Gaps = 23/348 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + ++R  IL+ L    RII +K  IP    +L++     +    S  +  I   I  +
Sbjct: 1   MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--GTEVNISHGDSNFYLQSFPE 115
              +   GS+ +    + +++RK++D      F   E+  G  + I   + +  L +   
Sbjct: 61  DLNITRIGSVLIKNKFIVEVIRKIEDE-----FITLEVVEGNLIKIKANNFDSVLNTLNS 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +++P    E         S+VLK ++ +T FA+  +E R   NG+    ++ + +L   A
Sbjct: 116 ADYPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITA 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RL+  ++D          +I+P K + EI R++S  D   ++ L    I +N +  
Sbjct: 176 TDSFRLSCKKIDYSNNYN--FDVIIPGKFINEIGRLISENDQVSELLL----IIINCKQ- 228

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294
               ++I+G++P+   VI  S +  L +N   + + ++R S++S+  +   V L +   K
Sbjct: 229 ----KIIEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQK 284

Query: 295 LCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEV 341
           + +T    ++G   E +  +  E     I FN KY+L+ +    + E+
Sbjct: 285 VLVTSFTQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTKEI 332


>gi|326329130|ref|ZP_08195458.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953017|gb|EGD45029.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 379

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 97/399 (24%), Positives = 174/399 (43%), Gaps = 36/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R    + +  A R +  + + PV   +L++A    L +     E      + A 
Sbjct: 1   MKFRVDRDVFADAVAWAARSLPVRPSTPVLSGLLIEAGHEGLVLSTFDYETSARATLSAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V   G   VS  LL DI R L         K  E+   G  V+++ G + F LQ+ P  +
Sbjct: 61  VADEGKALVSGKLLADICRSLPA-------KPVEMVTDGARVSLTCGSARFSLQTMPVED 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P T  E    +  + S +  + V +   A   +++   L G+   I    + L  +ATD
Sbjct: 114 YP-TLPEMPTAAGTVKSELFAHAVAQAVTAAGRDDMLPVLTGVRLEIEGSTISL--LATD 170

Query: 178 GHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL+  E++   A   +  + +VP K +G+  + L+S  S V ++LS +     I    
Sbjct: 171 RFRLSHRELEWNPATPDESLAALVPAKVLGDTAKSLTS-GSEVTLALSTTGTGEGIIGFE 229

Query: 237 ---------MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
                     + RL+DGEFP  +++ P  +     V+  +L ++V RV++++  R  AV+
Sbjct: 230 GAAAGGVRRTTTRLLDGEFPKVRSLFPAEHLTTALVDKASLVESVKRVALVAE-RNTAVQ 288

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +      L +   + D  +A ES+        +   FN ++LL+ +      + +D++VV
Sbjct: 289 MVFEDGVLTLDAGSGDEAQASESIEATMEGEGLTTGFNPQFLLDGL------QAIDEQVV 342

Query: 348 -FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +   V I GK  +       +    Y+LMP R+
Sbjct: 343 ELAFTQAPKPVVISGKPAEGGEEPGFR----YLLMPRRL 377


>gi|323342256|ref|ZP_08082488.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463368|gb|EFY08562.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 372

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 159/348 (45%), Gaps = 15/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +++    + L    R     + +P+   +  +  D  L + AS   I I   + A+
Sbjct: 1   MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   G + + +  + + VRKL D   I F  E   G    IS   + + +    
Sbjct: 61  DENKLNVYEEGEVVLESRYILEAVRKL-DSDFIDF--EIIDGALTRISGNKAEYNINGSK 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P+    +    F++    L  ++++T F  +T E R    G+ F  +   +  C V
Sbjct: 118 AELYPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNFKADGNTMN-C-V 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   +D+   +    +I +P   + E+ + +S  +  V +++S+  +   ++S
Sbjct: 176 ATDSYRLAKKSIDLPTPMDF--NICIPAVNLYEVSKTISD-NKDVHIAVSDKLVQFYVDS 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG FP+   +IP     EL VN  ++  A+DR S + S     VKL  S++ 
Sbjct: 233 TLIQSRLIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEG 292

Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           + ++  + ++G + E +  + Y    + I F+ +Y++E + +  +D V
Sbjct: 293 VLISSKSQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKTDTV 340


>gi|312126264|ref|YP_003991138.1| DNA polymerase III subunit beta [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776283|gb|ADQ05769.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 368

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 87/358 (24%), Positives = 169/358 (47%), Gaps = 29/358 (8%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           VL++A D ++    +  ++++     A +   G+  V A L  DIV+KL  G ++   +E
Sbjct: 33  VLIEAEDSIV-FTTNDMKMQMQTEFEAEILERGAALVKAKLFSDIVKKLPSG-EVEVIRE 90

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           +   +EV I      F L +    +FP   ++      E  +S   + V++  FA + +E
Sbjct: 91  D---SEVKIRSQKIEFRLPTLDPLDFPKMDKKPSESFCEFVASDFVDGVDKVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   E+D  +  V  DGHRLA+ ++  +A      S IVP + + +I +++
Sbjct: 148 TRPTFTGVLFEKEEDDF-VNLVGMDGHRLAICKIKPIAVEGNF-SKIVPAENLDDITKVV 205

Query: 213 SSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             +++  V+VS  E++    I S ++ + LI G+F +Y+  IP     ++ ++   L   
Sbjct: 206 DIEEAEKVRVSFFENQATFEIGSTTVILTLIAGKFFDYKGAIPTEYSTKISISSDVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDM-GKAIESMNVYYNECPMDICFNYK 327
           ++R SI+S      IQAV     ++ +  TV +    G+  E +        + + FN K
Sbjct: 266 LERASIVSKDEKTNIQAV--IFETNGMMFTVKSMSADGRYEEDVLCSVEGKDIRVGFNVK 323

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           Y L+++  +      D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 324 YFLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366


>gi|197302270|ref|ZP_03167329.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC
           29176]
 gi|197298701|gb|EDY33242.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC
           29176]
          Length = 369

 Score = 89.0 bits (219), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 173/346 (50%), Gaps = 15/346 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I  +I   
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVVKLTANDMELGIETSIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I ++A +  +IVRKL D ++++   E E   +  I+   + F + +    +F  
Sbjct: 61  IVERGIIALNAKIFSEIVRKLPD-SEVTI--ETESDNQALITCEKAKFSIAAQSGDDFSY 117

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+ +  +++   E     LK  + +T F++A  +    + G  F I E  LK+  V+ D
Sbjct: 118 LPAIESNDFITVSEFT---LKEAIRQTIFSIADNDTNKMMTGELFEITENVLKV--VSLD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
           GHR+++ ++D+     +   +IVP K + EI +I+  + ++ V++S +++ I    +   
Sbjct: 173 GHRISIRKIDL-KDSYEPRKVIVPGKTLQEISKIIGGEAEAEVQISFTKNHIVFEFDRTV 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKL 295
           +  RLI+GE+     ++    + ++RVN   L   +DR +++      + + + +  D +
Sbjct: 232 VVSRLIEGEYFRIDQMLSSDYETKVRVNKRELLDCIDRATLLIKEGDKKPIIIDIKDDAM 291

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            M +    +G   E +    +   + I FN K+L++ +  I  +EV
Sbjct: 292 QMMI-KSQIGSMDEVILCTKDGKDLMIGFNPKFLIDALRVIDDEEV 336


>gi|222528060|ref|YP_002571942.1| DNA polymerase III subunit beta [Caldicellulosiruptor bescii DSM
           6725]
 gi|222454907|gb|ACM59169.1| DNA polymerase III, beta subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 368

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 167/358 (46%), Gaps = 29/358 (8%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           VL++A D ++    +  ++++     A +   GS  + A LL DIV+KL  G      +E
Sbjct: 33  VLIEAEDRII-FTTNDMKMQMQTEFEAEILERGSALLKAKLLSDIVKKLPSGDVEVIREE 91

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           NE    V I      F L +    +FP    +      E  +S   + V++  FA + +E
Sbjct: 92  NE----VKIRSQKIEFRLPTLEPLDFPKMDRKPSESFCEFVASEFVDAVDKVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   ++D  +  V  DGHRLA+ ++  VA +    S IVP + + +I +I+
Sbjct: 148 TRPTFTGVLFEKEDDDF-VNLVGMDGHRLAICKIKPVA-VEGSFSKIVPAENLDDITKIV 205

Query: 213 SSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             ++   V+VS  E++    I S ++ + LI G+F +Y++ IP     ++ ++   L   
Sbjct: 206 DIEEPEKVRVSFFENQATFEIGSTTVILTLISGKFFDYKSAIPTEYSTKISISSDVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDM-GKAIESMNVYYNECPMDICFNYK 327
           ++R SI+S      IQAV     ++ +  TV +    G+  E +        + + FN K
Sbjct: 266 LERASIVSKDEKTNIQAV--IFETNGMMFTVKSVSADGRYEEDVLCSVEGKDIRVGFNVK 323

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           Y L+++  +      D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 324 YFLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366


>gi|184199648|ref|YP_001853855.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201]
 gi|183579878|dbj|BAG28349.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201]
          Length = 374

 Score = 88.6 bits (218), Expect = 1e-15,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 178/390 (45%), Gaps = 24/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +VER  + E +    R +  +  +PV   +L++A +G L I +   + EI+  +  S
Sbjct: 1   MKFSVERDVLAEAVTWTARSLSPRPPVPVLSGLLIKAENGSLSIASF--DYEISARLTIS 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV   G+  VS  LL DI R L   A +    E   G +V ++   S F L + P  ++
Sbjct: 59  ADVVEEGTTLVSGRLLADICRSLPS-APVQLEAE---GGKVTLTCRSSKFNLAAMPVDDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P       + S  +A     + V + + A + ++    L GI   I  E  K+  +ATD 
Sbjct: 115 PQLPGLPEL-SGVVAGDEFAHAVAQVNIAASKDDTLPILTGIRMEIEGE--KMTLLATDR 171

Query: 179 HRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLS 236
           +RLA+ E+        + +  ++  K + +I + L SS D ++ ++ +   +        
Sbjct: 172 YRLAMRELTWRPTDPTISTAALIKAKTLNDIAKTLGSSGDVNMALAPNTELVGFESGGRR 231

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +  LIDGE+P  +++ P +      V  + L +AV RVS+++  R   V+L+ S  ++ 
Sbjct: 232 TTSLLIDGEYPKIRSLFPENTPITAVVRTSELVEAVRRVSLVAE-RNTPVRLAFSDGQVA 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     +  +A E ++   N   + + FN  YL E +    S       V F   +    
Sbjct: 291 LDAGTGEDAQASEVLDAQLNGDEITVAFNPTYLSEGLHAFDS-----PFVRFSFTAPPKP 345

Query: 357 VFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
             +  +++ D ++  + K    Y+LMP+R+
Sbjct: 346 AVLSAQEELDGEDTVEYK----YLLMPVRL 371


>gi|289523932|ref|ZP_06440786.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502588|gb|EFD23752.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 384

 Score = 88.6 bits (218), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 76/313 (24%), Positives = 141/313 (45%), Gaps = 26/313 (8%)

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV-YSFELAS 134
           +I++KL  G     F      T+V I H  + F   ++P  EFP     E    +  + S
Sbjct: 77  EILKKLSHG-----FTIEATNTKVTIRHEKNQFNFTTYPTEEFPKLPSSESAKLACRIKS 131

Query: 135 SVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
             L   +    F  +T EE   YL+          LKL  +ATDG RL+++E D++    
Sbjct: 132 KDLSRSIREGSFTGSTNEEFPQYLSSALIEFKRNSLKL--IATDGKRLSLSEADLMEGST 189

Query: 194 KMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
           +  SI++P + + E+ RILS+  +DS +++   +S+ +   + + +S+R ++  FP Y  
Sbjct: 190 EEDSILIPIRGINELERILSTLDEDSLIEILYDDSQCYFRGDDIELSIRRVESLFPPYDR 249

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIES 310
           +I       + ++   L  A+++V ++     + + + L  +  L ++    ++G+    
Sbjct: 250 IISSDRTTWMTIDRQALIDALEKVEVIVRDFNKVIIMDLKPAGNLSISAFAKNVGEGFVE 309

Query: 311 MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370
           M    +  P+ + FN  YLL+ +  I              DSS    F  G     +  K
Sbjct: 310 MAAEVDGEPLKVGFNVAYLLQGLKAIG-------------DSSVRMSF-NGPHGQMRLQK 355

Query: 371 DNKVNAFYVLMPM 383
            +  N  Y+LMP+
Sbjct: 356 ISSDNFLYILMPV 368


>gi|257062756|ref|YP_003142428.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256790409|gb|ACV21079.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 365

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 178/392 (45%), Gaps = 35/392 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +S+ L  L    +    ++T+PV   V + A    L ++ +  +  I   + A 
Sbjct: 1   MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   +   LL DIV+ L D A I+   ++   +E  +S   ++F L +    +FPS
Sbjct: 61  VEDEGMCVIPQKLLSDIVKNLPDAA-ITVDVDD---SEATVSCDKTSFTLHTLIPDDFPS 116

Query: 121 TKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             E     +    F+  SS +K + +    A + ++ R  L G+      E + +  VAT
Sbjct: 117 FPEVNIDNQITVPFKQFSSAVKKVAK----AASKDQSRAVLTGVLLRTTPEGMSI--VAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RLAV  +   +   +  ++ V    V E+   L     ++ + LS +++        
Sbjct: 171 DSYRLAVCNLKFDSAGEEFEAL-VTSSFVLEVAS-LPEVQETIDICLSANQVMFRFGDTV 228

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDK 294
           M  R I+G++P Y+ +I  S   +     + L  AV RV +MSS     +K  +  ++  
Sbjct: 229 MVNRRIEGKYPAYEKLIAGSYTTKTCYTTSALITAVKRVGLMSSAA-SPIKFDINEATKN 287

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS- 353
             ++ ++ ++G A E ++   N   ++I  N++Y   IID +SS  +  D V F    S 
Sbjct: 288 TVLSTNSQEIGTASEVVSCEVNGENVEIALNHQY---IIDGLSS--ISTDHVFFETQGSM 342

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              VF  G+ +D            Y+LMP+R+
Sbjct: 343 KPGVFRSGEGED----------FLYLLMPVRL 364


>gi|312621130|ref|YP_004022743.1| DNA polymerase III subunit beta [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201597|gb|ADQ44924.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 368

 Score = 88.2 bits (217), Expect = 2e-15,   Method: Compositional matrix adjust.
 Identities = 90/358 (25%), Positives = 166/358 (46%), Gaps = 29/358 (8%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           VL++A D ++    +  ++++     A +   GS  + A LL DIV+KL  G      +E
Sbjct: 33  VLIEAEDRII-FTTNDMKMQMQTEFEAEILDRGSALLKAKLLSDIVKKLPSGDVEVIREE 91

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
           NE    V I      F L +    +FP    +      E  +S   + V++  FA + +E
Sbjct: 92  NE----VKIRSQKIEFRLPTLDPLDFPKMDRKPSESFCEFVASEFVDAVDKVIFATSKDE 147

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
            R    G+ F   ++D  +  V  DGHRLA+ ++  VA      S IVP + + +I +I+
Sbjct: 148 TRPTFTGVLFEKEDDDF-VNLVGMDGHRLAICKIKPVAVEGSF-SKIVPAENLDDITKIV 205

Query: 213 SSKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             ++   V+VS  E++    I S ++ + LI G+F +Y++ IP     ++ ++   L   
Sbjct: 206 DIEEPEKVRVSFFENQATFEIGSTTVILTLISGKFFDYKSAIPTEYSTKISISSDVLEST 265

Query: 272 VDRVSIMS---SVRIQAVKLSLSSDKLCMTVDNPDM-GKAIESMNVYYNECPMDICFNYK 327
           ++R SI+S      IQAV     ++ +  TV +    G+  E +        + + FN K
Sbjct: 266 LERASIVSKDEKTNIQAV--IFETNGMMFTVKSVSADGRYEEDVLCSVEGKDIRVGFNVK 323

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           Y L+++  +      D E+         ++FI  +   S   K +  N  Y+++P+++
Sbjct: 324 YFLDVLKEL------DGEI---------NLFITSQTSPSIVQKPDDPNYIYLVLPIKM 366


>gi|222823048|ref|YP_002574621.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100]
 gi|222538269|gb|ACM63370.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100]
          Length = 355

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 84/344 (24%), Positives = 168/344 (48%), Gaps = 23/344 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++ +   +      +++K++  ++ H+L +  D  L I+AS  EI I   I   
Sbjct: 1   MKISVNKNTLESAIVLTNSYVDKKDSSNIASHLLFEVVDDKLIIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + DI++ L +   I    EN L     I    + + L  F   +FP
Sbjct: 61  KVENSGFATANAKSILDIIKSLNNEDVILETIENFLF----IRQKGTKYKLPMFNYEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   A+ T   +Y LNG    I    +    V TD  
Sbjct: 117 NFPSTEGKDKFDIDSSDLSRSLKKILPAVDTNNPKYSLNGALLDIKTTHINF--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  ++  ++  K  ++ +P+KA+ E+ +I   K   +++   E+ +    ++     
Sbjct: 175 RLAVFTLNKTSE--KEFNLCIPKKAILEMQKIFFEK---IEIYYDENMLIAKNDNFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  KE      + + A+ ++++++    + +KL    DKL    
Sbjct: 230 KLINDKFPDYERVIPKNITKEFIFKTEDFQDALKKINVIT----EKMKLIFHKDKLVFEG 285

Query: 297 MTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           +++DN +    +E  +NV   +   ++C   K++ + +++I S+
Sbjct: 286 ISLDNMEAKTELEMELNV---DEEFNLCIKNKFITDFLNSIESE 326


>gi|311742164|ref|ZP_07715974.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum
           DSM 15272]
 gi|311314657|gb|EFQ84564.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum
           DSM 15272]
          Length = 380

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 96/395 (24%), Positives = 178/395 (45%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R    + +    R +  + ++PV   +L++A+   L +     E      +PA 
Sbjct: 1   MKFRIDRDTFADAVAWTARSLPLRPSVPVLAGLLVEASAEGLTLSGFDYETSTRATLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   VS  LL +IV+ L +   I    +   GT+VN++ G + F LQ+ P  E+P 
Sbjct: 61  VSDEGRALVSGRLLSEIVKSLPN-KPIDVALD---GTKVNLTCGSARFALQTMPVEEYPR 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        + + +    V++   A   +E+   L GI   +    + L  +ATD  R
Sbjct: 117 LPQMPTATG-TVKADLFATAVQQAGAAAGRDEMLPLLTGIRLELEGSTISL--MATDRFR 173

Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHL-NIESL-- 235
            ++ ++D   + + + +  +VP K + E  R L S  D +V VS  ++   L   E +  
Sbjct: 174 ASLRDLDWYPEASDLSAQALVPAKVLNETARSLQSGGDITVAVSSGQTGDGLIGFEGVVG 233

Query: 236 ----SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL++G+FP  + +     +    VN     ++V RVS+++  R   V+L+ +
Sbjct: 234 NGTRRTTTRLLEGDFPRVRQLFQAQAETVAYVNTQEFVESVKRVSLVAE-RNTPVRLTFA 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   + D  +A ES+        + I FN  YLLE +  + SD VV   + F   
Sbjct: 293 DGVLLLEAGSGDEAQASESLEATIEGNDISIGFNPGYLLEGL-GVMSDPVV--HLSFTQH 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
           +  +++   G+     +       AF Y++MP+R+
Sbjct: 350 TKPAAISGVGETGAEPD------GAFRYLIMPVRL 378


>gi|257067225|ref|YP_003153480.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810]
 gi|256558043|gb|ACU83890.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810]
          Length = 374

 Score = 87.8 bits (216), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 97/392 (24%), Positives = 182/392 (46%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--P 58
           MK  ++R  + + +  A R +  +  +P+   V + A+ G  E++ S  + E++  I   
Sbjct: 1   MKFHLDRGVLGDAVSWATRTLPVRPAMPILQGVRIVADAGG-ELQLSTFDYEVSAQIRLE 59

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A VD  G + V   +L DIVR L +   +S   E   GT++ +  G + F L + P  E+
Sbjct: 60  AEVDQPGEVLVQGRMLSDIVRALPN-KDVSVALE---GTKLQVRCGSARFALATLPVEEY 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P       V    +A+ V    + +   A + ++    L G+   I+ E + L  +ATD 
Sbjct: 116 PQLPTMPPVAG-AVAADVFSEAIAQVTVAASKDDTLPLLTGVKVEISGETMTL--MATDR 172

Query: 179 HRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSE----SRIHLNIE 233
           +RLA+ E+           + +V  + + E+ R L++    V+++LSE    + I     
Sbjct: 173 YRLALRELTWNPTTPGTELTALVRGRTLHEVARSLATG-GGVEIALSEDDSATLIGFEAG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               +  L+DGE+P  + + P ++     V   +L  AV RVS+++  R   V+LS +  
Sbjct: 232 GRRTTSTLVDGEYPPVRRLFPDTSAITAVVATASLIDAVKRVSLVAE-RNTPVRLSFTEG 290

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +     D  +A E +  +     + + FN  +LL+ +  + ++      + F  DS 
Sbjct: 291 QVALEAGAGDDAQASEVLEAHLEGEDLVVGFNSGFLLDGLGALGTEFA---RLTFT-DSI 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             SV + G+D   +   D+     Y++MPMRI
Sbjct: 347 KPSV-MTGQDS-LEGAPDSSYK--YLIMPMRI 374


>gi|146295087|ref|YP_001178858.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408663|gb|ABP65667.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 367

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 77/273 (28%), Positives = 133/273 (48%), Gaps = 12/273 (4%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+  V A LL DIV+KL  G  I   +E+    EV I      F L +    +FP    +
Sbjct: 64  GAALVKAKLLSDIVKKLPSG-DIEIIRED---NEVKIRCQKIEFRLPTLDPLDFPKMDRK 119

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
                 E A++  ++ +++  FA + +E R    G+ F    + + L  V  DGHRLA+ 
Sbjct: 120 PIDSFCEFAANEFEDAMDKVIFATSKDETRPTFTGVLFEREGDSVNL--VGMDGHRLAIC 177

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLID 243
           ++  + ++    S IVP + + +I +I+  +++  V+VS  E++    I S S+ V LI 
Sbjct: 178 KLKPI-EVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIVTLIS 236

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS---SVRIQAVKLSLSSDKLCMTVD 300
           G F +Y+NVIP     ++ ++   L   ++R SI+S      +QAV   +S     +   
Sbjct: 237 GRFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFRVMSY 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           + D G+  E +        + I FN KY L+++
Sbjct: 297 STD-GRYEEDVLCDVEGKDIRIGFNVKYFLDVL 328


>gi|307128509|ref|YP_003880539.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri CARI]
 gi|306482971|gb|ADM89841.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri CARI]
          Length = 375

 Score = 87.4 bits (215), Expect = 3e-15,   Method: Compositional matrix adjust.
 Identities = 82/343 (23%), Positives = 157/343 (45%), Gaps = 8/343 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           MK     +D+   L     +I     +P+    L +     +L I  S  EI +   I  
Sbjct: 1   MKFISSSNDLFRSLKSIYNVININKKLPILETFLFKIKKKNILNITVSDLEITMRTQIKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  + + +L +I++K+ +   ++F KE +   ++   +G+ N  +  +   E+P
Sbjct: 61  NSINFGSAAIPSKILIEILKKIPEQP-LTFIKEIDNKLKIISQNGEYN--ISIYSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   SF ++   L  ++  T FA+  ++IR  +NG+FF IN        ++TD +
Sbjct: 118 KYSKLEKTDSFFISEKKLLKIINYTLFAVGNDDIRPVINGVFFEINYNISSF--ISTDTN 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            L    +  +    K   II  +        +  + D SV +  ++       ++  +  
Sbjct: 176 LLVKYSIKEIFSKKKFFFIIPKKPLNLLKNNLNYT-DKSVLIEYNKYNTSFLFQNKKLIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMT 298
            LI+G +PNY ++I  + +K L +N      ++ RV + S++    + L+ S S     +
Sbjct: 235 TLINGNYPNYLSIINNNYNKILIINKNYFINSIKRVILFSNLLTSQILLNFSKSQSKISS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            D     KA E +  +Y   P++I FN KYL+EI+ NI+ D++
Sbjct: 295 WDINSNNKAFEYLFCHYEGDPIEIGFNSKYLIEILSNINCDDI 337


>gi|239916573|ref|YP_002956131.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665]
 gi|281414963|ref|ZP_06246705.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665]
 gi|239837780|gb|ACS29577.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665]
          Length = 374

 Score = 87.4 bits (215), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 94/390 (24%), Positives = 178/390 (45%), Gaps = 25/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K TVER  + + +  A R +  +  +PV   +L+ A  G++ I +   E      I A 
Sbjct: 4   VKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
           V+  G + VS  LL DIVR L   AQ++     EL G +V ++   S F L + P  ++P
Sbjct: 64  VETAGQVLVSGRLLNDIVRSLPQ-AQVTV----ELDGGKVLVTCRSSRFSLATMPVGDYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E     +  +  +   + V +   A + ++    L  +   I  + +    +ATD +
Sbjct: 119 ALPELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITF--LATDRY 175

Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+ E+    A  +   S+++  + + E+ + L S  D  + +  +   +         
Sbjct: 176 RLAMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRT 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DGE+P  +++ P S+  +  V+   L +A  RV++++  R  A+++  +  ++ +
Sbjct: 236 TSVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAE-RNTALRMVFTEGQVTL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD-EVVFRLDSSNSS 356
                D   A ES+        + + FN  YL E +       VVD  +V F   S+   
Sbjct: 295 DAGTGDDASANESVPCTLEGEDITVAFNPSYLSEGL------AVVDQPQVRFAFTSAPKP 348

Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
             + G      N +D  V+ + Y++MP+RI
Sbjct: 349 ALLTG-----VNQEDGVVSDYRYLVMPVRI 373


>gi|315639364|ref|ZP_07894526.1| DNA-directed DNA polymerase III beta subunit [Campylobacter
           upsaliensis JV21]
 gi|315480690|gb|EFU71332.1| DNA-directed DNA polymerase III beta subunit [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 168/344 (48%), Gaps = 21/344 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI + ++ +   +      +++K+   V+ H+L +AN+  L IKAS  EI I   I   
Sbjct: 1   MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G  T +A  + D+++ L +   I    +N L     I   ++ + L  F   +FP
Sbjct: 61  RIENPGFATANAKSIADVIKNLNNEEIILETIDNFLF----IRQKNTKYKLPMFNYEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG +  I E   K+  V++D  
Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++          I +P+KA+ E+ ++   K   +++   E+ +    E+     
Sbjct: 175 RLAIYTLNKTND--NEFHISIPKKAIMEMQKLFYEK---IEIYYDENMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP    +E  +   +   A+ ++S+++    +++KL  + +K+    
Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFTLQTEDFIDALKKISVVT----ESMKLHFTKNKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           +++DN +    +E      N+  + I    KYLL+ +++I  +E
Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKI--KYLLDFLNSIEENE 327


>gi|297564208|ref|YP_003683181.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848657|gb|ADH70675.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 384

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/356 (23%), Positives = 156/356 (43%), Gaps = 27/356 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R    E +    R +  +  +PV   + ++ +     +  SG + E++    AS
Sbjct: 1   MKLRVDRDAFAEAVAWTARALPTRPAVPVLSGIRMELSPDGASLHLSGFDYEVS--TRAS 58

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           VDV     G+  V   LL +IVR L  G+       +  G ++ I  G + F L + P  
Sbjct: 59  VDVLSEEPGAALVPGRLLAEIVRNLPSGS----VHIDSDGPKLRIVGGAARFTLITMPLE 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+           +A+      V +   A + ++    L G++   + + L L  VAT
Sbjct: 115 DYPTLPGMPGRIG-SVAADAFAAAVRQVAPAASRDDTLPMLTGVYLDFSGDTLSL--VAT 171

Query: 177 DGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRIL------------SSKDSSVKVSL 223
           D +R+AV E+    +   +  + +VP + + + +R L            +S    V +S 
Sbjct: 172 DRYRIAVRELWWSPEDQGLDAAALVPARTLSDTVRGLLTKSNVDIALSTASGGEGVSLSP 231

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            E  I         + RLID EF  Y    P        V  T L +AV RV++++  R 
Sbjct: 232 GEGMIGFENGERRTTTRLIDSEFVKYAAWFPKEFSARAEVAVTPLAEAVKRVALVAD-RN 290

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
             ++L+ S  ++ +   + +  +A+E++ V Y   P+ + F   YL++ +  + +D
Sbjct: 291 TPLRLAFSEGEVVLEAGSGEDAQAVEAIEVGYEGEPLRLAFRPDYLMDGLAGVETD 346


>gi|148271180|ref|YP_001220741.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829110|emb|CAN00007.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 383

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 83/348 (23%), Positives = 164/348 (47%), Gaps = 15/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R    E +  A +++ ++ T+P+   VL++A +  L + +   E+     I A 
Sbjct: 1   MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + VS  LL DI  +L + A + F  E+   +++ +S G ++F L S P  E+P 
Sbjct: 61  IEEPGRVLVSGRLLADIANRLPN-APVRFTTED---SKITVSCGSAHFTLLSMPVEEYP- 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T  +    S  L +      V +   A + +++   + G+   + E  L L  +ATD +R
Sbjct: 116 TLPQISEQSGLLPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDS-SVKVSLSESR--IHLNIE 233
           +AV E+D     +       + +VP + + EI +      + SV ++ ++ R  I  + +
Sbjct: 174 VAVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHSGTISVAITDTDDRQLIAFSAD 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             +++  LI G FP  + + P + D    +N  +L +A  RV ++   R  A++ + S D
Sbjct: 234 RKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVLE-REAALRFTFSID 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            L +     +  +A ES++         +    ++LL+ +  + S+ V
Sbjct: 293 GLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFV 340


>gi|283782561|ref|YP_003373315.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05]
 gi|283441379|gb|ADB13845.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05]
          Length = 374

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 96/396 (24%), Positives = 173/396 (43%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + ++A +G L++ A   +I     I A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI +   L+ DI + L   A+ ++ K       + I+ G S F LQ  P  E+P 
Sbjct: 61  VDEEGSILILGKLMADITKSLP--AEKTYLKSE--NNTLTITSGKSTFTLQLMPLGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E  +    ++ +      V +   + + EE R  L GI   I  ED  +   +TD  R
Sbjct: 117 LPELPHKLG-QVDAPTFIQAVNQASVSTSREENRPVLTGI--RIQFEDDTVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSM-- 237
           L+ +      +   + S  + R   G +LR I  S D    V      IH N E  S+  
Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTR---GSLLRDIAHSLDDHQNVI-----IHFNEEDKSLLG 225

Query: 238 --------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                   + ++IDGEFP+   +          +N   L  A+ RVS+++  R   +++ 
Sbjct: 226 FENSGRTSTSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVAE-RNAPIRMI 284

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S+ +L ++    D  +A E +++  +   + + FN  YLLE +  I      +  V  +
Sbjct: 285 FSNQELTLSAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMK 339

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++   V   G+    +++ D   +  Y+L+PMR 
Sbjct: 340 MATAVKPVEFNGQ---QESDGDESTDYRYLLVPMRF 372


>gi|269954812|ref|YP_003324601.1| DNA polymerase III subunit beta [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303493|gb|ACZ29043.1| DNA polymerase III, beta subunit [Xylanimonas cellulosilytica DSM
           15894]
          Length = 377

 Score = 87.0 bits (214), Expect = 4e-15,   Method: Compositional matrix adjust.
 Identities = 89/392 (22%), Positives = 173/392 (44%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  V+R  + + +    R +  +   PV   V ++A+  G++ + +   E+     IPA
Sbjct: 1   MKFRVDRDVLADAVTWTARTLPTRPPAPVLAGVRIEADATGVISLSSFDYEVSARSEIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V   G++ VS  LL DI R L      +S       GT+V ++ G S F L + P  ++
Sbjct: 61  EVSEPGTVLVSGRLLADIARALPHKPVDVSLE-----GTKVVVTCGASRFTLLTMPVEDY 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  +   + S  ++   L   V +   A + +E    L G+   I  E + L  ++TD 
Sbjct: 116 PTLPQMPEL-SGTVSGDALTLAVTQVSVAASRDETLPLLTGVRMEIEGERITL--LSTDR 172

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIE 233
           +RLA+ E+          ++ +V  K + ++ + L +    V V LS       I     
Sbjct: 173 YRLALRELTWTPATPGFSAVALVKAKTLIDVAKSLGAGGGLVNVGLSTGSGLDLIGFEAG 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + +L+DG++P  + + P +      V    L  A  RVS+++  R   ++L+ +  
Sbjct: 233 GRHTTSQLVDGDYPAVRRLFPDATPIHAVVPTQALIDAARRVSLVAE-RNTPIRLAFTEG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +     D  +A E++        + + FN ++LL+ +  + +     D V       
Sbjct: 292 QVVLDAGQGDDAQASEALEAVLVGEDITVAFNPQFLLDGLTALGT-----DFVRLSFTHP 346

Query: 354 NSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMR 384
           N  V   G++  D +++ D +    Y+L+P+R
Sbjct: 347 NKPVEFTGQESLDGEDSSDYR----YLLVPIR 374


>gi|57506227|ref|ZP_00372146.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195]
 gi|57015495|gb|EAL52290.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195]
          Length = 355

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 82/344 (23%), Positives = 168/344 (48%), Gaps = 21/344 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI + ++ +   +      +++K+   V+ H+L +AN+  L IKAS  EI I   I   
Sbjct: 1   MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G  T +A  + D+++ L +   I    +N L     I   ++ + L  F   +FP
Sbjct: 61  RIENPGFATANAKSIADVIKNLNNEEIILETIDNFLF----IRQKNTKYKLPMFNYEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG +  I E   K+  V++D  
Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++          I +P+KA+ E+ ++   K   +++   E+ +    E+     
Sbjct: 175 RLAIYTLNKTND--NEFHISIPKKAIMEMQKLFYEK---IEIYYDENMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP    +E  +   +   A+ ++S+++    +++KL  + +K+    
Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFALQTEDFIDALKKISVVT----ESMKLHFTKNKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           +++DN +    +E      N+  + I    KYLL+ +++I  +E
Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKI--KYLLDFLNSIEENE 327


>gi|325108904|ref|YP_004269972.1| DNA polymerase III subunit beta [Planctomyces brasiliensis DSM
           5305]
 gi|324969172|gb|ADY59950.1| DNA polymerase III, beta subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 369

 Score = 87.0 bits (214), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 152/354 (42%), Gaps = 37/354 (10%)

Query: 35  LQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94
           L   D  + ++   PE+E TG+        G + +    L  I+R++     I+    ++
Sbjct: 44  LMGTDTEIGMRYQIPEVE-TGS-------SGEVLLPTQRLVSILREVVS-PDITLQVSDD 94

Query: 95  LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
           L   + ++ G S F L      EFP          F +    LK  ++R  FA   E  R
Sbjct: 95  L---LEVTAGQSEFRLPVEDPREFPDVAPFNAETYFRVPGHALKQAIKRVIFAADDESTR 151

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRIL 212
           Y L G+F  ++     L A  TD  RLAV E+   A+  +++  + ++PRKA+  + R +
Sbjct: 152 YALGGVFMELSANGAVLAA--TDSRRLAVVEIPATAEGDVSETITAVIPRKAMTLLERSI 209

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
              DS + ++  +        S  +  RL++G FPN+++V+P ++   + +        V
Sbjct: 210 DGDDSEILIAPGDHDAVFRSGSCMIYTRLVEGRFPNFRDVVPSNSTVTIDMVAGPFHNLV 269

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
            +  I++S   + V        + +     D+G++   M + Y+   + I F+ +++ E 
Sbjct: 270 RQSQIVTSDESRGVDFVFREGSVLLKSRAADVGESKVEMPIDYSGDELAIMFDPRFVSEF 329

Query: 333 IDNISSDEVVDDEVVFRL---DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +       V+D E    L      + +VF  G+D              YV+MP+
Sbjct: 330 L------RVLDAETTVNLGLTGGEDPAVFRSGEDYR------------YVIMPL 365


>gi|309804032|ref|ZP_07698113.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308163800|gb|EFO66066.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           11V1-d]
          Length = 274

 Score = 86.7 bits (213), Expect = 5e-15,   Method: Compositional matrix adjust.
 Identities = 64/267 (23%), Positives = 133/267 (49%), Gaps = 11/267 (4%)

Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164
           +S+F +       +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  
Sbjct: 4   NSDFTINGLDADNYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDF 63

Query: 165 NEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS 224
           N +++   A+ATD HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   
Sbjct: 64  NPKEIN--AIATDSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPG 121

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283
           E+++   I +++   RL++G +P+ + +IP      + ++   L ++++RVS+++   R 
Sbjct: 122 ENQVLFKIANINFYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRN 181

Query: 284 QAVKLSLSSDK--LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDE 340
             VK+ L+ +   + ++ D+ ++G   E +     N   ++I FN  YL + +  +S   
Sbjct: 182 NVVKMYLNVEDQIIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDAL-RVS--- 237

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            + D +V +         +  KD D K
Sbjct: 238 -ITDSIVIKFTKPLRPFVVVPKDSDEK 263


>gi|149180587|ref|ZP_01859091.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
 gi|148851740|gb|EDL65886.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
          Length = 374

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 74/351 (21%), Positives = 164/351 (46%), Gaps = 18/351 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M+  ++   + + L    R+I    ++PV   V ++A+   L +     ++ I   I   
Sbjct: 1   MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60

Query: 58  ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G + V     +++++K+ D    +F K  +   +V I+ G+    L    
Sbjct: 61  QADAGRIIAPGKLVVPVRYFHNLIKKMPDD---TFIKIKKFNKQVKITSGEIETTLSLLN 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E ++P   E        +  S+L  ++++T FA++  + R  L G+ +  +E  L L  +
Sbjct: 118 EEDYPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTL--I 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           AT+  R+A+ +  + + +    S I+P KA+ E++  +  K   +++  S++ +    + 
Sbjct: 176 ATNSQRMAMRKAAMSSPVTG--SFILPGKAMTELVNAI-DKHQFIQIYPSDNLVIFQADD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           L +  RLI G +P+   +IP     E+ V+   L Q + R ++++S  +   V  SL+++
Sbjct: 233 LFLYTRLISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNE 292

Query: 294 -KLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEV 341
            ++ +T    ++G   E +       +  + I F+ K+L E + ++S + V
Sbjct: 293 GRIQLTSSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMSEELV 343


>gi|227485758|ref|ZP_03916074.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236313|gb|EEI86328.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 370

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 83/336 (24%), Positives = 156/336 (46%), Gaps = 21/336 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +++ ++++ L    R + +   I +   +     +  L + +   EI I     A 
Sbjct: 1   MKFEIKQKELMKALNIVNRAVSKSTNIQIHELIYFSTENNRLSMTSFDGEISIKTLADAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP-----E 115
           +   G + V A L+ +I+RKL D       K    G ++ IS   SNF L +F      E
Sbjct: 61  IIKEGVMAVKADLITNIIRKLPD----ELVKIELDGGKIKISCKRSNFNLVAFEYFDKEE 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
              P+T       +  + +  LK  + +T FA   +E +  L GI F + E  L +  VA
Sbjct: 117 INIPNT------VALSIDNDKLKRSISQTEFATTLDETKLALTGILFELKEGCLNM--VA 168

Query: 176 TDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            DG+R+A+ ++ +      +    I+P++++ E  RI+S  DS   +  +E+ +    E 
Sbjct: 169 LDGYRVALKKIKLDYPGDFEDTEYIIPKRSLLEWSRIVSD-DSKTSLYRNENDLLFASED 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
             M  ++ID  F +Y+N+I   ++  + V  + L  A+DR  ++S   R   +++++  D
Sbjct: 228 TIMLCKVIDKNFIDYRNIINDISETTVLVEKSALIAALDRAQVLSDPGRANLIRVNI-ED 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
           +      N ++G   E + +      +DI FN KY+
Sbjct: 287 RAMTLRSNSEIGDVKEVIEIDQEGEGLDIAFNAKYM 322


>gi|327334559|gb|EGE76270.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL097PA1]
          Length = 410

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 98/403 (24%), Positives = 181/403 (44%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I +ER  + E +  A R +  + T+P+   +L++A D  + + AS  E      +PA 
Sbjct: 25  VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAQDDSVVMSASDNETSAQITLPAQ 84

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           VD  G   VS  LL +I R L +   QI+         ++++  G + F LQ+ P  E+P
Sbjct: 85  VDKPGESLVSGKLLAEIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 139

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +  + ++V    V +   A   +E+     G+   IN E L L  +ATD +
Sbjct: 140 DLPQMP-AATGTVDANVFSRAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRY 196

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           R+A+ EV           + +VP K + E  R ++S +  V V+LS     E  +    +
Sbjct: 197 RMALKEVTWNPSATDAEATALVPAKVINETARSMTSGE-HVTVNLSSGDSGEGLVGFEGD 255

Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ 
Sbjct: 256 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVHRVSLVAE-RNTPLRMV 314

Query: 290 LSSDKLCMTVDNPDMGKAIESM-----NVYYNECPMDIC-FNYKYLLEIIDNISSDEVVD 343
           ++ D + ++    D  +A E++     N    E  +    FN +YL + +  + +     
Sbjct: 315 INDDSIALSAATGDQAQASEAIEAVVTNHVDGESTITAAGFNPQYLSDALGALDT----- 369

Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 370 PYVHFSFTAPGKPCLVTGLNDLDGKPETDYR----HVIMLMRL 408


>gi|187918303|ref|YP_001883866.1| DNA polymerase III, beta chain [Borrelia hermsii DAH]
 gi|119861151|gb|AAX16946.1| DNA polymerase III, beta chain [Borrelia hermsii DAH]
          Length = 386

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 81/331 (24%), Positives = 155/331 (46%), Gaps = 20/331 (6%)

Query: 17  ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76
           A  II  +N   +   +LL+  +  L IKA+   I     IP        + ++A    D
Sbjct: 20  AKSIILNRNINDIWSAMLLEVENSNLTIKATDRNIFFESTIPIVSTENFKVLINASNFSD 79

Query: 77  IVRKLQDGAQISF-FKENE-----LGTEVNISHGDSNFYLQ--SFPESEFPS----TKEE 124
            V+ L    ++   F+E+E     +G   N S   +N +L   +F   +  S       E
Sbjct: 80  AVKALNLYNELKIKFREDENRLNIIGESENKSENCTNDHLSEPTFSNEDIESYNYDINGE 139

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
            Y ++ +L     K ++ +  F+ + +E +  LNGI+F  N+ D  L  V+T+ HR++V 
Sbjct: 140 TYNFTVDLNQKEFKKIINKISFSASHDESKNVLNGIYFTKNK-DSTLTLVSTNSHRMSVY 198

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           + ++V +  +  + IVP K    +L+ +   +  +K+ +S+ + ++   +  ++  LI+G
Sbjct: 199 KTELVFE--EDINFIVPVKMFN-LLKQMMIGEGMIKLKVSDKKFYVEFNNYKIACSLING 255

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
            +P+Y+++IP        V  + L+  + RV+  +  R + V L+ SS +L +  ++P  
Sbjct: 256 NYPDYESIIPNEQQNRSLVEISVLKDRLARVNSYTDKRSKKVILNFSSKQLRLMAEDPIT 315

Query: 305 GKA----IESMNVYYNECPMDICFNYKYLLE 331
           G+     I+  N  Y      I  N  YL E
Sbjct: 316 GRKGEFFIQDPNYDYEGSEEAIAINSAYLTE 346


>gi|291521106|emb|CBK79399.1| DNA polymerase III, beta subunit [Coprococcus catus GD/7]
          Length = 367

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 167/354 (47%), Gaps = 31/354 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S +L  +    + +  + T+P+   +L+    G++++ A+  ++ I   +   
Sbjct: 1   MKIICNKSALLTGVNTVLKAVPARTTMPILECILIDTTSGVIKLTANDMDLGIETTVDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN----------FYL 110
           V   G I + A L  +IVRKL D             +EV I   D+N          F +
Sbjct: 61  VLDKGCIALEAKLFSEIVRKLPD-------------SEVTIETDDNNKALIKCEKAKFNI 107

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                 +F +  E E  +   L+   LK ++ +T F+++  E    ++G    I+++ L+
Sbjct: 108 AGKDGEDFVALPEIEKTHFITLSQFSLKEIIRQTIFSISDNESNRMMSGELLQIDQDQLR 167

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIH 229
           L  V+ DG R+++ ++ +      + ++I P K + EI +ILS   D  V++  ++  + 
Sbjct: 168 L--VSLDGQRISIRKISLKESYDPIKAVI-PGKTLNEISKILSGDMDDDVRIYFTDRHVL 224

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM--SSVRIQAVK 287
              +   +  RL++GE+     +I    + ++ +N   L+  ++R S++   S R + + 
Sbjct: 225 FEFDQTVVVSRLLEGEYFQIDKMISSDYNTKITINKKELQGCIERASLLIRESER-KPII 283

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           ++++   + M + +  MG   E +++      + I FN K++L+ +  I  +E+
Sbjct: 284 INVTDGSMEMKIQSA-MGSMNEDIDISKEGRDIMIGFNPKFILDALRVIDDEEI 336


>gi|57504598|ref|ZP_00370710.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228]
 gi|305432570|ref|ZP_07401731.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli
           JV20]
 gi|57019493|gb|EAL56187.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228]
 gi|304444281|gb|EFM36933.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli
           JV20]
          Length = 355

 Score = 86.7 bits (213), Expect = 6e-15,   Method: Compositional matrix adjust.
 Identities = 79/344 (22%), Positives = 171/344 (49%), Gaps = 21/344 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+++ ++ +   +      +E+K++  ++ H+L +A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLLFEADEDKLIIRASDFEIGINYKIRKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESGGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E    F++ SS L   +++   ++ T   +Y LNG F  I  +  ++  V TD  
Sbjct: 117 NFPKTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--RINFVGTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  ++      +   I +P+KA+ E+ ++   K   +++   E+ +    ++     
Sbjct: 175 RLAVYTLEKTNN--QEFHISIPKKAIMEMQKLFYEK---IEIYYDENMLIAKNDNFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL+ +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELKFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           +++DN +    +E       E  ++I    KYLL+ + +I  ++
Sbjct: 286 ISLDNMEAKTELEIETGVSEEFNLNI--KIKYLLDFLTSIEEEQ 327


>gi|86150533|ref|ZP_01068757.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85838985|gb|EAQ56250.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 355

 Score = 86.3 bits (212), Expect = 7e-15,   Method: Compositional matrix adjust.
 Identities = 79/346 (22%), Positives = 167/346 (48%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  TV+A  + D+++ L +   I    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATVNAKSIADVIKSLNNEEVILETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    KYLL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329


>gi|242310228|ref|ZP_04809383.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489]
 gi|239523525|gb|EEQ63391.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489]
          Length = 355

 Score = 86.3 bits (212), Expect = 8e-15,   Method: Compositional matrix adjust.
 Identities = 82/346 (23%), Positives = 174/346 (50%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M IT++ S +  +       +++K++  ++ H+ L+  D  L  KA+  E+ +     + 
Sbjct: 1   MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G  TV+   + DI+++L++G +++ +  NE    ++I    S+F L  F   EFP
Sbjct: 61  TINEQGIATVNGKQILDIIKRLKEG-EVNLYTNNE---NLHIKQNKSSFKLPMFNAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E E +   E+ S  L + +++    +     +  LNG    I E       VATD  
Sbjct: 117 TFPEYETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKEYSYNF--VATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + D  +      ++I P+KA+ EI R+      ++++  +E  I +  ++     
Sbjct: 175 RLAMVKFDNAS--GNNLALIFPKKAITEIQRLFF---DNIELFYNERNIIIKSQNYIFFS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
            LI+G+FP+Y+ ++P     EL +  +++   ++ + +++SV    VKL+   +++    
Sbjct: 230 HLINGKFPDYEKILPKEIQTELVLQKSSI---IEGIKVINSVT-NDVKLTFRPNEILFES 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ DN +    IE +N+   E  ++I  N +++L+ +  I S E +
Sbjct: 286 LSQDNSEAQTQIE-INLPITE-EIEIGINSRHVLDFLSQIDSVEFI 329


>gi|224418814|ref|ZP_03656820.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT
           98-5491]
 gi|253826662|ref|ZP_04869547.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT
           98-5491]
 gi|313142333|ref|ZP_07804526.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491]
 gi|253510068|gb|EES88727.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT
           98-5491]
 gi|313131364|gb|EFR48981.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491]
          Length = 355

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 172/346 (49%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I ++ S +  +       +++K++  ++ H+ L+  +  L  KA+  E+ +     + 
Sbjct: 1   MNIIIQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRENQLICKATDFEMGLCSTTNSL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G  TV+   + DI+++L++G +I+ +  NE    ++I    S+F L  F   EFP
Sbjct: 61  TINEQGIATVNGKQILDIIKRLKEG-EINLYTNNE---NLHIKQNKSSFKLPMFNAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E E +   E+ S  L N +++    + T   +  LNG    I E       VATD  
Sbjct: 117 SFPEYETLPKLEINSLELINSMKKIFPVIDTNNQKRELNGALLDIKEYSYNF--VATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + +  +      ++I P+KA+ EI R+       +++  +E  I +  ++     
Sbjct: 175 RLAMVKFENPS--GNNLALIFPKKAITEIQRLFF---DHIELFYNEKNIVIKSQNYVFFS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
            LI+G+FP+Y+ ++P     EL +  T +   ++ + +++SV    VK++   +++    
Sbjct: 230 HLINGKFPDYEKILPKEIQTELTIPKTKI---IEGIKVINSVT-NDVKITFKPNEIFFES 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           ++ DN +    IE +N+   E  ++I  N +++L+ +  I + + +
Sbjct: 286 LSQDNSEAQTQIE-INLPITE-EIEIGINSRHVLDFLSQIETTDFI 329


>gi|302384446|ref|YP_003820268.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1]
 gi|302195074|gb|ADL02645.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1]
          Length = 373

 Score = 85.9 bits (211), Expect = 9e-15,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 51/400 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T ++ +IL  +    + +  K T+ +   + + A+   +++ A+  E+ I   +  +
Sbjct: 1   MKLTFKQDEILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I + A LL +IVRKL          E++      IS  +S F++Q     EF  
Sbjct: 61  ILERGKIALEAKLLSEIVRKLSSAGDSLVTIESDEKFTTTISCENSVFHIQGRDGEEFAY 120

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P  + + Y+    L+   LK ++ +T F++A  +    + G  F +    LK+  V+ D
Sbjct: 121 LPYIERDHYIC---LSQFSLKEVIRQTIFSIAPNDSNKMMTGELFQVTGNQLKV--VSLD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
           GHR+++  +++      +  +IVP K + E+ +IL    +  V +  S + I    +   
Sbjct: 176 GHRISIRNIELKDTYHDI-KVIVPGKTLNEVSKILGGDSEKEVLIFFSTNHILFEFDDTI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-- 294
           +  RLI+GE+     ++    + +  VN   L   +DR +I+  VR         +DK  
Sbjct: 235 VVSRLIEGEYFRIDQMLSSDYETKTSVNKRQLLDCLDRATIL--VR--------ENDKKP 284

Query: 295 LCMTVDNPD----MGKAIESMN----VYYNECPMDICFNYKYL---LEIIDNISSDEVVD 343
           L M +++ +    M  +  SMN    ++     + I FN K+L   L IID        D
Sbjct: 285 LIMNIEDQEMELKMNSSFGSMNAQVPIHKTGSDIMIGFNPKFLIDALRIID--------D 336

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +EV   + +  S  FIR          D +    Y+++P+
Sbjct: 337 EEVTLYMLNPKSPCFIR----------DEEGKYIYLILPV 366


>gi|284030634|ref|YP_003380565.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836]
 gi|283809927|gb|ADB31766.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836]
          Length = 382

 Score = 85.9 bits (211), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 79/386 (20%), Positives = 161/386 (41%), Gaps = 28/386 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I  E+ ++ E +    R +  +   PV   VLL A      I  +   I     +  S
Sbjct: 1   MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGTTIAGTDQAIANRAGLACS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           VD  G+      +L +IV+ L  G+     +   +   + ++ G + + L   P  EF  
Sbjct: 61  VDEPGTCLAPGRMLAEIVKLLPPGS----LRLETVDNALVLTSGTATYALPLMPVEEFAP 116

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P+  +E   +S E+        V +   +   +++   L+GI      + ++L  V+TD
Sbjct: 117 LPALPDE---HSAEVEPEEFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVEL--VSTD 171

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV----------SLSESR 227
            +RL +A V + A +     ++VP K + +++R  S+    +++             ++ 
Sbjct: 172 RYRLGIARVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDAT 231

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
             L     S  +R++ G +  Y+ +IP  +  +LR +   LR+ V R++++++  +  + 
Sbjct: 232 FGLRNAVRSTCLRVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVAA-GMTPIW 290

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             L+ D L +   +P      E++       P+ I F    L + I +  + ++    V 
Sbjct: 291 FDLTGDDLRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTSQLC---VA 347

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNK 373
           F    +   V I G   D     D +
Sbjct: 348 F--AGARKPVLITGATADGAPAGDYR 371


>gi|225548655|ref|ZP_03769702.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a]
 gi|225370685|gb|EEH00121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a]
          Length = 385

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 81/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   YL+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDYLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLAFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347


>gi|268678646|ref|YP_003303077.1| DNA polymerase III subunit beta [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616677|gb|ACZ11042.1| DNA polymerase III, beta subunit [Sulfurospirillum deleyianum DSM
           6946]
          Length = 355

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 84/362 (23%), Positives = 168/362 (46%), Gaps = 25/362 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++++S +  +L +    +E+K+   ++ HV L   +    +KA+  EI +T      
Sbjct: 1   MKVSIKKSILETMLLNVQPYLEKKDLSQITSHVFLAIENEHFVLKATDYEIGLTYHTSEI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T +   L DIV+ L+D   I       +   + I    S F L     ++FP
Sbjct: 61  KIASFGDGTANGKKLLDIVKSLKDDEIIL----ETINDYLYIKQNSSKFKLPMLNPNDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F + S+ L   +++   A+ T   ++ LNG    I +  + L  VATD  
Sbjct: 117 LFPTIENKPKFNINSTTLVRSIKKIAPAIDTNNPKFELNGSLIDIKDNTINL--VATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  V +  +  +  S I+P+KA+ EI ++       +++   E+ +       +   
Sbjct: 175 RLAI--VTLQQETTENFSFIIPKKAISEIQKLFFD---DIEIFYDENTLIAQSNHFTFYT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
           +LI+G+FP+Y  +IP + +  + +    + +++ ++SI+S      +K++  ++K+    
Sbjct: 230 KLINGKFPDYARIIPKNKNYTILLTREFMIESIKQISIISP----EIKITFKAEKIIFES 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV----DDEVVFRLDS 352
           +  DN +    ++      NE  + +  N +YLL+ + NI +        D  + F L+S
Sbjct: 286 LNDDNIEAKTEVDFETGLQNEIYLAV--NSRYLLDFLSNIENSNFTLGFNDSGLPFTLES 343

Query: 353 SN 354
            N
Sbjct: 344 EN 345


>gi|306823995|ref|ZP_07457369.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309801968|ref|ZP_07696082.1| DNA polymerase III, beta subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552993|gb|EFM40906.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308221416|gb|EFO77714.1| DNA polymerase III, beta subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 374

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 93/394 (23%), Positives = 174/394 (44%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +    + + +    R+I+ +   P+   V L+A DG+L++ A    I     I A 
Sbjct: 1   MKVEINSQALADAVAWTTRVIDARPATPILAGVRLEAIDGILQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L   ++ ++   +  G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEAGTALVLGKLLADITKSLP--SEKTYLSTD--GSTMTITSGKSTFTMQLMPDNEYPD 116

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    S      V +   A++ EE R  L GI      +  K+   +TD
Sbjct: 117 LP----VVPAKLGQVDSPTFMQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIE 233
             RL+ +      +    P I       G +LR +  S D    + L    ES   L  E
Sbjct: 171 RFRLSRSSFTWTPE---NPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFE 227

Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +     + +LIDGEFP    +          ++  +L  A+ RVS+++  R   ++++ +
Sbjct: 228 NAGRISTSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVAE-RNAPIRMAFA 286

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++    D  +A E +++  +   + + FN  YL+E +  IS     +  V  ++ 
Sbjct: 287 GQELTLSAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMT 341

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   V   G+    + + D  ++  Y+L+PMR 
Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMRF 372


>gi|227502243|ref|ZP_03932292.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC
           49725]
 gi|306834800|ref|ZP_07467864.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227077067|gb|EEI15030.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC
           49725]
 gi|304569328|gb|EFM44829.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 393

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 92/401 (22%), Positives = 182/401 (45%), Gaps = 38/401 (9%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD  
Sbjct: 9   VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTKVRIAGMVDEP 68

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELG---TEVNISHGDSNFYLQSFPESEFPST 121
           G I V+  LL DIV  L +       KE E+    ++  ++ G S F L   P  ++P  
Sbjct: 69  GQIAVAGKLLSDIVATLPN-------KEVEISQVDSKALVTCGSSRFELPLIPLDDYPQL 121

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                V    +   +    +++   A   ++    L G+   I+ +D+++   ATD  RL
Sbjct: 122 PVLPEVTG-TIQPQLFAEAIQQVAAAAGKDDTLPMLTGVHMDIHGKDIEMT--ATDRFRL 178

Query: 182 AVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLN 231
           A+   E +  A+  +   ++VP K + +  R L    +  +++++       ++    L+
Sbjct: 179 AMRTLEWEPAAEDVEA-KLLVPAKTLQDTGRSLDPHLNIPIEIAVGSGDNIGADGLFGLH 237

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++   + R++D +FPN Q ++P S+     V    L++A+ RVS+++    Q +++  +
Sbjct: 238 ADNRETTTRMLDADFPNVQPLLPKSHTNIASVEVAPLQEAIRRVSLLTDRNAQ-IRMEFA 296

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++ ++    D G A E++   ++      I FN  YL + +  I++     D VVF  
Sbjct: 297 DGQVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLAVINT-----DRVVFGF 350

Query: 351 -DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
            + S  ++ I   ++  + ++D      + N  Y+LMP+R+
Sbjct: 351 TEPSRPAIMIPEPEELPEADEDGNFPTPQTNFTYLLMPVRL 391


>gi|310286522|ref|YP_003937780.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17]
 gi|311063461|ref|YP_003970186.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum
           PRL2010]
 gi|309250458|gb|ADO52206.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17]
 gi|310865780|gb|ADP35149.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum
           PRL2010]
          Length = 374

 Score = 85.5 bits (210), Expect = 1e-14,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 177/390 (45%), Gaps = 25/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ +   P+   + L+A DG L++ A   EI     I A 
Sbjct: 1   MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L   A+ ++   +  G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEPGTALVLGKLLADITKSLP--AEKTYLSTD--GSTMTINSGKSTFTMQLMPDAEYPD 116

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    +      V +   A++ EE R  L G+    + +  K+   +TD
Sbjct: 117 LP----VVPAKLGQVDAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTD 170

Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL+ A      Q I    + +V    + ++ R L    + V    +++   L  E+  
Sbjct: 171 RFRLSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAG 230

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +       +  ++   L  A+ RV++++  R   +++  S  +
Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVAE-RNAPIRMVFSGQE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D  +A E +++  +   + + FN  YL+E +  I+     +  V  ++ ++ 
Sbjct: 290 VTLSAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAIT-----EPFVRMKMTTAV 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V   G+    + + D  ++  Y+L+PMR
Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMR 371


>gi|298253030|ref|ZP_06976822.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis 5-1]
 gi|297532425|gb|EFH71311.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis 5-1]
          Length = 374

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 173/396 (43%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + ++A +G L++ A   +I     I A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI +   L+ DI + L   A+ ++ K       + I+ G S F LQ  P  E+P 
Sbjct: 61  VDEEGSILILGKLMADITKSLP--AEKTYLKSE--NNTLTITSGKSTFTLQLMPLGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +  +    ++ +      V +   + + EE R  L GI   I  ED  +   +TD  R
Sbjct: 117 LPKLPHKLG-QVDAPTFIQAVNQASVSTSREENRPVLTGI--RIQFEDDSVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSM-- 237
           L+ +      +   + S  + R   G +LR I  S D    V      IH N E  S+  
Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTR---GSLLRDIAHSLDDHQNVI-----IHFNEEDKSLLG 225

Query: 238 --------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                   + ++IDGEFP+   +          +N   L  A+ RVS+++  R   +++ 
Sbjct: 226 FENSGRTSTSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVAE-RNAPIRMI 284

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S+ +L ++    D  +A E +++  +   + + FN  YLLE +  I      +  V  +
Sbjct: 285 FSNQELTLSAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMK 339

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++   V   G+    +++ D   +  Y+L+PMR 
Sbjct: 340 MATAVKPVEFNGQ---QESDGDESTDYRYLLVPMRF 372


>gi|319652160|ref|ZP_08006279.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
 gi|317396149|gb|EFV76868.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
          Length = 375

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 81/340 (23%), Positives = 161/340 (47%), Gaps = 19/340 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-------VDVCGS 66
           +G     I  K   P+   + L A +  L +  S  +I I   IPA+       +   GS
Sbjct: 14  VGEVSSAISAKTPFPILTGIKLTACENHLRLTGSNSDIVIEKVIPAADEGAELEIVKTGS 73

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           + V++  L ++++KL     I   +++     V I   +   Y+  FP  ++P   E + 
Sbjct: 74  VVVTSRYLTELIKKLPGDIHIKLNEKHN----VTIISDEIITYINGFPAEQYPKLPEFDN 129

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
            +  +++S  L  ++++T FA +  + R  L G+   + E     CA ATD HRLA  + 
Sbjct: 130 SHEIQISSVKLSAIIKQTVFAASKNDTRPVLTGVHMIVKENHFS-CA-ATDSHRLAFLQT 187

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSVRLIDGE 245
            I +  A   S IVP  ++ E+L++L+ ++ S V++  SES +    +S+ +  RLI+G+
Sbjct: 188 SIAS--ASKGSFIVPGSSLKELLKLLAHQEESEVQIFSSESYLVFKTKSIMLCSRLIEGK 245

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDM 304
           +P+   +IP      ++++   L + +DR  + +   +   V L +    L ++  +  +
Sbjct: 246 YPDVTGLIPNEAKTVIKLDAKKLLKGIDRACLFALEWKNNNVLLEIKEGALKISSVSSAI 305

Query: 305 GKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVV 342
           GK  E+  +     E  + I  +  +L++ +  I  + V+
Sbjct: 306 GKIEETQPLLEITGERELSISLDGNFLMDALKAIQEEHVL 345


>gi|254435683|ref|ZP_05049190.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus
           oceani AFC27]
 gi|207088794|gb|EDZ66066.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus
           oceani AFC27]
          Length = 171

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 52/167 (31%), Positives = 92/167 (55%), Gaps = 14/167 (8%)

Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           V++    +++    + LS S +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+
Sbjct: 19  VRLKFGTNQMRAEFQGLSFSTKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNIL 78

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           ++ + + V L LS  KL   V N + G A E +++ Y    ++I FN  YL+++++ I +
Sbjct: 79  TNDKYRGVHLHLSDLKLQAIVTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDT 138

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            EV       RL  +N+S        D+ ++K       YV+MPMR+
Sbjct: 139 KEV-------RLTFTNASSSCLITPIDASDSK-------YVVMPMRL 171


>gi|269793360|ref|YP_003312815.1| DNA polymerase III subunit beta [Sanguibacter keddieii DSM 10542]
 gi|269095545|gb|ACZ19981.1| DNA polymerase III, beta subunit [Sanguibacter keddieii DSM 10542]
          Length = 376

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 90/390 (23%), Positives = 174/390 (44%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +   PV   V ++A+ +G L + +   E+     IPA
Sbjct: 1   MKFRVERDVLAEAVTWTARTLPTRPPAPVLAGVRIEASAEGTLGLSSFDYEVSARSEIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I VS  LL +I R L     + F  E   GT+V +  G S F L + P  ++P
Sbjct: 61  EVSEPGVILVSGRLLAEISRALP-AKPVDFTVE---GTKVTVVCGASRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      + S  +    L + V +   A + ++    L G+   I  E  ++  +ATD +
Sbjct: 117 ALPSMPEI-SGTVQGDELTHAVAQVTVAASRDDTLPLLTGVRVEIEGE--RITMLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           RLA+ E+        + ++ + R + + ++ + L      V V+LS       +      
Sbjct: 174 RLALREMTWKPASPDISTVALVRARTLSDVAKSLGGS-GEVNVALSTGTGVDLVGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L+DG++P+ + + P        V    L  A  RV++++  R   +++S S  +
Sbjct: 233 RHTTSLLVDGDYPHVRRLFPDETPIHAVVPTQPLIDAAKRVALVAE-RNTPIRMSFSEGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++        + + FN ++LL+ +  + +D V       RL  ++
Sbjct: 292 VVLDAGQGDDAQASEALEAVLVGEDISVAFNPQFLLDGLGALGTDFV-------RLSFTH 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +  +    +DS + +D+  +  Y+L+P+R
Sbjct: 345 PNKPVEFTGQDSLDGEDSS-HYRYLLVPIR 373


>gi|161833638|ref|YP_001597834.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri GWSS]
 gi|152206127|gb|ABS30437.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri GWSS]
          Length = 366

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 159/342 (46%), Gaps = 9/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           MK     +D+L+ L     +I   N +P+     L+     +L I  S  EI +T  +  
Sbjct: 1   MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  +   +L DI++ + +   ++F KE  +  ++ I + +  + +  +   E+P
Sbjct: 61  NSINYGSAAIPYKILIDILKNIPEQP-LTFIKE--IDNKLKIIYQNGEYNISIYSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S  ++   L N++  T FA+  ++IR  +NG+ F IN +     +  T   
Sbjct: 118 KYSILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNT-TI 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            +     DI++        I+ +K +  +   L + D  V +S ++       +   +  
Sbjct: 177 LVKYTRKDILSN--NKIKFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G +PNY ++I    +K L +N      ++ RV+  S +  Q + L+LS ++  ++ 
Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            + +  KA E +   Y   P+ I FN K+L++I+ NI+ D++
Sbjct: 294 WDYN-NKAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDI 334


>gi|225352381|ref|ZP_03743404.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156888|gb|EEG70257.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 386

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 95/391 (24%), Positives = 178/391 (45%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 13  MKVEVNSQALADAVAWTTRVIDARPASPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI V   LL DI + L   A  ++   +  G+ + I+ G S F +Q  P++E+P 
Sbjct: 73  VDESGSILVLGKLLADITKSLP--AAKTYLSTD--GSTLTITSGKSTFTMQLMPDNEYPD 128

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    +      V +   A++ EE R  L GI   +  +  K+   +TD
Sbjct: 129 LP----VVPAKLGQVDAQTFAQAVAQASVAVSREENRPVLTGI--RVQFQGNKVIMSSTD 182

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL+ +      +   + +  + R A + ++ R L    + V     E+   L  E+  
Sbjct: 183 RFRLSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVVDFDPENPSLLGFENAG 242

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +          +N  +L  A+ RVS+++  R   ++++ +S +
Sbjct: 243 RVSTSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVAE-RNAPIRMAFTSQE 301

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T  + D  +A E +++  +   + + FN  YL+E +  IS     +  V  ++ ++ 
Sbjct: 302 LTLTAGSVDEAQAKEILDIDMDGEDITVAFNPAYLIEGLSAIS-----EPFVRMKMTTAV 356

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V   G+    ++N +  ++  Y+L+PMR 
Sbjct: 357 KPVEFNGQ---QESNSEESMDYRYLLVPMRF 384


>gi|229085761|ref|ZP_04217989.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44]
 gi|228697560|gb|EEL50317.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44]
          Length = 376

 Score = 85.1 bits (209), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 86/372 (23%), Positives = 168/372 (45%), Gaps = 39/372 (10%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DV-------CG 65
           +    + +  KN  P+   + L A    L +  S  +I I   IP  + DV        G
Sbjct: 14  ISEVSKAVSLKNPFPILTGIKLIAEKNCLILVGSNSDIVIEKIIPLMINDVKVLEVYKTG 73

Query: 66  SITVSAHLLYDIVRKLQ-------DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           SI +SA  L +IV+KL        +G Q+   + +E+   +N            F   E+
Sbjct: 74  SIVISAKYLSEIVKKLPHDIHIKVNGKQLVTIQSDEIVINLN-----------GFNTEEY 122

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS  + +     ++ S  L   + +T FA++  E R  L G+     E   +L  VAT+ 
Sbjct: 123 PSLPQIDEATYTKIPSIELIEAINQTVFAVSKSESRPVLTGVNMSFKEN--QLSCVATNS 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+ E+ I   +    S  VP  ++ E+++++ ++   + + +++S I    +++S+ 
Sbjct: 181 HRLALRELAIETNVNG--SFNVPGASLNELIKLIKNEIGEIHIYMTDSYIVFKSDTISLF 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS-SDKLC 296
            RLI+G +PN   ++P  +   + ++   L + +DR  + ++  R   V L +    K+ 
Sbjct: 239 SRLIEGNYPNISGLLPKDSKTIITLDTIQLLKGIDRACLFANEWRNNKVNLEIKDGTKIR 298

Query: 297 MTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           +  ++ ++G+  E+ N+     E  + I  +  +L++ +  I      ++E+    D S 
Sbjct: 299 IFSNSSELGEIEETQNIKMISGEKELSISLDGSFLIDALKVIK-----EEEIRLSFDGSM 353

Query: 355 SSVFIRGKDKDS 366
             V I   D  S
Sbjct: 354 RPVLIEPVDNSS 365


>gi|296392442|ref|YP_003657326.1| DNA polymerase III subunit beta [Segniliparus rotundus DSM 44985]
 gi|296179589|gb|ADG96495.1| DNA polymerase III, beta subunit [Segniliparus rotundus DSM 44985]
          Length = 397

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/389 (24%), Positives = 174/389 (44%), Gaps = 37/389 (9%)

Query: 18  CRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76
            R +  +  +P+   +LL A++ G L +  +  ++     + A V   G + VS  LL D
Sbjct: 23  TRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQVSGPGKVLVSGRLLAD 82

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I + L     +    E   GT+V++  G + F L S P  EFPS  E    +   + S+ 
Sbjct: 83  IAKALPS-PSVRIATE---GTKVHVRSGSAKFTLPSMPVDEFPSLAE----HPTPIGSAQ 134

Query: 137 LKNL---VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-I 192
            K L   + +   A + ++    L G+     +E ++L A  TD  RL+V ++    + +
Sbjct: 135 AKELFAAISQVGVAASRDDTLPALTGLRLVFTQEGIELAA--TDRFRLSVRKLVWDGKGV 192

Query: 193 AKMP-SIIVPRKAVGEILRI-LSSKDSSVKVSL-----SESRIHLNIESLSMSVRLIDGE 245
            + P + +VP   + E  R  L + D+ V+ +L     S S + +      ++ RL+D +
Sbjct: 193 GEEPLTALVPAAVLSEFARTQLETDDAPVEFALDQGAGSPSLLGVQAGPFRITTRLLDAQ 252

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL---SSDKLC-MTVDN 301
            P+   +IP       RV    L +AV RVS++S+ R Q ++L      SD L  ++   
Sbjct: 253 LPDVSQLIPKRYSSLARVELAPLVEAVRRVSLVSARRSQ-IRLDFQGSGSDALLKLSAGA 311

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV-FIR 360
            + G A E + V +   P+ + FN  YLL+ +          +   F     N +V  + 
Sbjct: 312 EEAGFAEEELAVQHWGEPISVVFNPGYLLDGLSTFRG-----ECGQFGFTGPNRAVALVT 366

Query: 361 GKDKDSKNNKD----NKVNAFYVLMPMRI 385
           G   + +   +    +  +  YVLMP+R+
Sbjct: 367 GDGPEPEETAEGYTADAPDQVYVLMPVRL 395


>gi|218283255|ref|ZP_03489316.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989]
 gi|218216010|gb|EEC89548.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989]
          Length = 372

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/349 (22%), Positives = 166/349 (47%), Gaps = 15/349 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI-TGAIPA 59
           M  +++R    + L    R I   + +P    + +   D  + +  S   I I T  +P 
Sbjct: 1   MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISIRTVIVPG 60

Query: 60  SVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            ++       GSI + +  L +IVRKL D   I    E    + V IS  +  F L    
Sbjct: 61  ELNNLDIEEEGSIIIDSKYLLEIVRKL-DCKNIEI--EVIDYSLVRISSDNGQFNLNGIR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P     +  + F L ++ LK++V +T FA + ++ R  L G+ F+ ++ ++  C+ 
Sbjct: 118 SNEYPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNFN-SQGNMLYCS- 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD +RLA   +++ +  ++  +I +P K++ E++R +S  D ++ +     +     + 
Sbjct: 176 GTDSYRLARKTIELDS--SQDFNITIPSKSLTEVVRSVSD-DDTIDIFADSKKAQFVFDK 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG FP+ Q +IP S   ++ V+   +   +DR + + + ++  +KL  +  +
Sbjct: 233 TIIQTRLIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQE 292

Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             +   + ++G + E +    Y    + +  N  Y+L+ I  +  ++V+
Sbjct: 293 THVKTYSSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVL 341


>gi|293977750|ref|YP_003543180.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri DMIN]
 gi|292667681|gb|ADE35316.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri DMIN]
          Length = 370

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 80/342 (23%), Positives = 159/342 (46%), Gaps = 9/342 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPA 59
           MK     +D+L+ L     +I   N +P+     L+     +L I  S  EI +T  +  
Sbjct: 1   MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  +   +L DI++ + +   ++F KE  +  ++ I + +  + +  +   E+P
Sbjct: 61  NSINYGSAAIPYKILIDILKNIPEQP-LTFIKE--IDNKLKIIYQNGEYNISIYSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S  ++   L N++  T FA+  ++IR  +NG+ F IN +     +  T   
Sbjct: 118 KYSILENTNSILISEKQLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNFVSTNT-TI 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            +     DI++        I+ +K +  +   L + D  V +S ++       +   +  
Sbjct: 177 LVKYTRKDILSN--NKIKFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G +PNY ++I    +K L +N      ++ RV+  S +  Q + L+LS ++  ++ 
Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            + +  KA E +   Y   P+ I FN K+L++I+ NI+ D++
Sbjct: 294 WDYN-NKAFEYLFCSYEGDPIKIGFNSKFLIDILSNINCDDI 334


>gi|261338545|ref|ZP_05966429.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM
           20093]
 gi|270276566|gb|EFA22420.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM
           20093]
          Length = 374

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 97/391 (24%), Positives = 176/391 (45%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  + + +      R+I+ +   P+   V L+A DG L + A   EI     I A 
Sbjct: 1   MKVEVNSTSLADAAAWTTRVIDSRPNSPILAGVKLEAKDGALFLSAFNYEISARDRIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L   ++ ++      G+ + I+ G S F +Q  PESE+P 
Sbjct: 61  VDEPGAVVVLGKLLTDISKMLP--SEKTYLATE--GSTLRITSGKSTFTMQLMPESEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +       ++ +      V +   A++ +  R  L  +    + E + L   +TD +R
Sbjct: 117 LPQLPPQIG-QVDAETFAQAVAQAVVAVSHDGTRQVLTAVRMQCDGERVTLS--STDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHL----NIE 233
           L+ A          + +  + R   G  LR +S    +  +V +S   S   L    N  
Sbjct: 174 LSRALFHWTPDDNDINATALIR---GTHLRDISRSLDEHQNVVISFDPSNPTLLGIQNAG 230

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            +S +V+LIDGEFP    +          V    L  A+ RVS+++  R + +++  + +
Sbjct: 231 RIS-TVQLIDGEFPAVDRLYADEYPIHAVVERQQLISAIKRVSLVAG-RNEPIRMIFTGE 288

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ MT    D  +A E ++V  +   + + FN  YL+E I  I+     +  V  ++ ++
Sbjct: 289 EVTMTAGAADESQAREILDVDLDGEDITVAFNPNYLIEGISAIT-----EPYVRMKMTTA 343

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V   G+    +++ D  +N  Y+L+PMR
Sbjct: 344 VKPVEFDGQ---QEHDSDESMNYRYLLVPMR 371


>gi|266620979|ref|ZP_06113914.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479]
 gi|288867360|gb|EFC99658.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479]
          Length = 373

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 96/400 (24%), Positives = 180/400 (45%), Gaps = 51/400 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T ++  IL  +    + +  K T+ +   + + A+   +++ A+  E+ I   +  +
Sbjct: 1   MKLTFQQDAILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I + A LL +IVRKL          E++      IS   S F++Q     EF  
Sbjct: 61  IHERGKIALDAKLLSEIVRKLSSAGDSVVTIESDEKFTTTISCEKSVFHIQGRDGEEFAY 120

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P  + + Y+    L+   LK ++ +T F++A  +    + G  F ++   LK+  V+ D
Sbjct: 121 LPYIERDNYIC---LSQFTLKEVIRQTIFSIAPNDSNKMMTGELFQVSGSQLKV--VSLD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
           GHR+++  V++      +  +IVP K + E+ +IL    +  V +  S + I    +   
Sbjct: 176 GHRISIRNVELKDTYHDI-KVIVPGKTLSEVSKILGGDNEKEVLIFFSSNHILFEFDDTI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLI+GE+     ++    + ++ VN   L  +++R +I+  +R         +DK  
Sbjct: 235 VVSRLIEGEYFRIDQMLSSDYETKITVNKRELLDSIERATIL--IR--------ENDKKP 284

Query: 297 MTVDNPD------MGKAIESMN--VYYNECPMDIC--FNYKYL---LEIIDNISSDEVVD 343
           + ++  D      M  +  SMN  V  ++   DI   FN K+L   L IID        D
Sbjct: 285 LIINVVDQELQLKMNSSFGSMNAEVAAHKTGSDIMIGFNPKFLIDALRIID--------D 336

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +EV   + +  S  FIR          D +    Y+++P+
Sbjct: 337 EEVTLYMLNPKSPCFIR----------DEEGKYIYLILPV 366


>gi|157414324|ref|YP_001481580.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385288|gb|ABV51603.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 81116]
          Length = 355

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 78/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    KYLL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329


>gi|317509428|ref|ZP_07967046.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316252257|gb|EFV11709.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 397

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 93/386 (24%), Positives = 168/386 (43%), Gaps = 31/386 (8%)

Query: 18  CRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76
            R +  +  +P+   +LL A++ G L +  +  ++     + A V   G + VS  LL D
Sbjct: 23  TRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQVSGPGRVLVSGRLLAD 82

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I + L     +    E   G++V++  G + F L + P  EFPS  E         A  +
Sbjct: 83  IAKALPS-PSVKIVAE---GSKVHVRSGSAKFTLPTMPVDEFPSLAEHPAPIGVAAAKEL 138

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ-IAKM 195
               + +   A + ++    L G+      ++L+L A  TD  RL+V ++    +  A  
Sbjct: 139 FAA-ISQVGVAASRDDTLPALTGLRLVFTGQELELAA--TDRFRLSVRKLAWEGKDFADE 195

Query: 196 P-SIIVPRKAVGEILRI-LSSKDSSVKVSL-----SESRIHLNIESLSMSVRLIDGEFPN 248
           P + +VP   + E  R  L S D+ V+ +L     S S + +      ++ RL+D + P+
Sbjct: 196 PVTALVPAAVLSEFARTPLPSDDTPVEFALDLGSGSPSLLGVQAGPFRITTRLLDAQLPD 255

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK----LCMTVDNPDM 304
              +IP       RV+   L +AV RVS++S+ R Q ++L   S      L ++    + 
Sbjct: 256 VSQLIPKRYTAVARVDLAPLVEAVRRVSLVSARRSQ-IRLDFESSGEDSVLRLSAGGEEA 314

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
           G A E + V +    + + FN  YLL+ +    +     ++  F     N +V +   D 
Sbjct: 315 GFAEEELPVRHWGESISVVFNPGYLLDGLSTFRA-----EQAQFGFTGQNRAVALVSGDG 369

Query: 365 D-----SKNNKDNKVNAFYVLMPMRI 385
                 ++       +  YVLMP+R+
Sbjct: 370 AEPEAIAEGYTAGSSDQVYVLMPVRL 395


>gi|203284346|ref|YP_002222086.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly]
 gi|201083789|gb|ACH93380.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly]
          Length = 386

 Score = 84.7 bits (208), Expect = 2e-14,   Method: Compositional matrix adjust.
 Identities = 71/308 (23%), Positives = 150/308 (48%), Gaps = 16/308 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           +  A  II  +N   +   +LL+     L IKA+   I     IP       ++ ++A  
Sbjct: 17  IDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIVSTDNFNVLINASN 76

Query: 74  LYDIVRKLQDGAQISF-FKENE-----LGTEVNISHGDSNFYLQ--SFPESEFPS----T 121
           L D V+ L    ++   FKE+E     +G   N +   +N +L   +F   E  +     
Sbjct: 77  LADAVKALNLYDELKMKFKEDENKLDIIGESDNNNENYTNDHLSEPTFSTEEIENYNYDI 136

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +E Y ++FEL    LK ++ +  F+ + +E +  LNGI+F  +   + L  V+T+ +R+
Sbjct: 137 NDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYFTKDSNSV-LTLVSTNSYRM 195

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           ++ + D++ +  +  + IVP K    +L+ + + +  +K  +S+ + ++   +  ++  L
Sbjct: 196 SIYKTDLIFE--EDVNFIVPVKMFN-LLKQMITGEGVIKFKVSDKKFYVEFNNYKIACSL 252

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           I G +P+Y+++IP        ++ +  +  + RV+  +  R + V L+ S ++L +  ++
Sbjct: 253 ISGNYPDYESIIPNEYTNRALIDVSMFKDRLSRVNSYTDKRSKKVILNFSVNQLKLMAED 312

Query: 302 PDMGKAIE 309
           P  G+  E
Sbjct: 313 PITGRKGE 320


>gi|312195933|ref|YP_004015994.1| DNA polymerase III subunit beta [Frankia sp. EuI1c]
 gi|311227269|gb|ADP80124.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c]
          Length = 392

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 102/412 (24%), Positives = 166/412 (40%), Gaps = 55/412 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           M++TV R++  E  G   R +  +    +     ++ + G  L + A   ++ +T  + A
Sbjct: 1   MRVTVPRAEFAEAAGWVARHLPARMAPGIVAIAGMRVDAGERLTLSAFDYQVAVTATVEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY-LQSFPE-SE 117
           S  V G   V   L+ DI+R L D        E  L      +H       L+ +P    
Sbjct: 61  SAAVPGGALVPGRLVADIMRSLPDETVRLSVDEGWLLVRAAGAHYRVPILPLEDYPALPT 120

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP    E     F  A       V +   A A +E    L  +   +    L L  VATD
Sbjct: 121 FPPPVGEVDTLGFAAA-------VNQVVPAAARDETFPVLTALRLELAGRGLTL--VATD 171

Query: 178 GHRLAVAEVDIVAQIAKMPSII--VPRKAVGEILRILSSKDSSVKVSLSE-----SRIHL 230
            +RLAV  +     + + P  +  VP + + E+ RI ++  S + + L        R  L
Sbjct: 172 RYRLAVRTIPWQPSV-RDPEAVAHVPARLLAELARIPTAA-SRLALGLGADDDGGPRFGL 229

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           +  +  + VRL+DG FP+Y+ + P S    +      L  A+ RV++++      V+L+ 
Sbjct: 230 STGARRIVVRLVDGTFPHYRRLFPESVGLCVGAQIAPLAAAIRRVAVVAPRTGPVVRLTF 289

Query: 291 SSDKLCMTVDNPDMG-------------KAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           S+  L   V  PD G              A +S+ + Y+   +   +N  YLL+ +  + 
Sbjct: 290 SAGVLTADV-GPDAGTTTAGDSGPLSLAAATDSVPIDYDGPDLVAWYNPTYLLDGLGAVD 348

Query: 338 SDEVV------DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            DEV       D +   RL +      I GKD D            YVLMP+
Sbjct: 349 GDEVTIGFAASDPDEAARLPA-----IITGKDDDGFR---------YVLMPV 386


>gi|170780464|ref|YP_001708796.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155032|emb|CAQ00128.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 396

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 164/348 (47%), Gaps = 15/348 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R    E +  A +++ ++ T+P+   VL++A +  L + +   E+     I A 
Sbjct: 14  VKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQAD 73

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + VS  LL DI  +L + A + F  E+   +++ +S G ++F L S P  E+P 
Sbjct: 74  IEEPGRVLVSGRLLADIANRLPN-APVRFTTED---SKITVSCGSAHFTLLSMPVEEYP- 128

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T  +    S  L +      V +   A + +++   + G+   + E  L L  +ATD +R
Sbjct: 129 TLPQISEQSGLLPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYR 186

Query: 181 LAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDS-SVKVSLSESR--IHLNIE 233
           +AV E+D     +       + +VP + + EI +      + SV ++ ++ R  I  + +
Sbjct: 187 VAVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHSGTISVAITDTDDRQLIAFSAD 246

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             +++  LI G FP  + + P + D    +N  +L +A  RV ++   R  A++ + + D
Sbjct: 247 KKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVLE-REAALRFTFTID 305

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            L +     +  +A ES++         +    ++LL+ +  + S+ V
Sbjct: 306 GLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFV 353


>gi|154503048|ref|ZP_02040108.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149]
 gi|153796289|gb|EDN78709.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149]
          Length = 369

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 81/354 (22%), Positives = 169/354 (47%), Gaps = 31/354 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I   +S++++ +    + +  K T+P+   +L+ A+  ++++ A+  E+ I   I   
Sbjct: 1   MRIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVIKLTANDMELGIETRIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPE-SEF 118
           +   G I ++A +  +IVRKL D    I    +N+  T +       N   QS  + S  
Sbjct: 61  ILERGIIALNAKIFSEIVRKLPDSDVVIETTSDNQ--TLITCEKAKFNIAAQSGEDFSYL 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  ++E+Y+   E     LK ++ +T F++A  +    + G  F I    LK+  V+ DG
Sbjct: 119 PVIEKEDYITVSEFT---LKEVIRQTIFSIADNDTNKMMTGELFEIEGNILKV--VSLDG 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSM 237
           HR+++ ++++    A+   +IVP K + EI +I+  + ++ V +S +++ I    +   +
Sbjct: 174 HRISIRKIELKENYAQ-KKVIVPGKTLQEISKIIGGEAEALVDISFTKNHIVFEFDKTVV 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+GE+     ++    + ++R++   L   +DR +++              DK  +
Sbjct: 233 VSRLIEGEYFKIDQMLSSDYETKVRIHKKELLDCIDRATLLIK----------EGDKKPI 282

Query: 298 TVDNPD----------MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +D  D          +G   E++ +      + I FN K+L++ +  I  +EV
Sbjct: 283 IIDIKDGTMELKIKSQIGSMDETIFITKEGKDLLIGFNPKFLIDALRVIDDEEV 336


>gi|315123618|ref|YP_004065622.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017340|gb|ADT65433.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 378

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 166/344 (48%), Gaps = 21/344 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           +++DN +    +E       E  + I    KYLL+ + +I  ++
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTI--KIKYLLDFLTSIEEEK 327


>gi|224283953|ref|ZP_03647275.1| DNA polymerase III subunit beta [Bifidobacterium bifidum NCIMB
           41171]
 gi|313141105|ref|ZP_07803298.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
 gi|313133615|gb|EFR51232.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
          Length = 374

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 87/390 (22%), Positives = 177/390 (45%), Gaps = 25/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ +   P+   + L+A DG L++ A   EI     I A 
Sbjct: 1   MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L   A+ ++   +  G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEPGTALVLGKLLADITKSLP--AEKTYLSTD--GSTMTINSGKSTFTMQLMPDAEYPD 116

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    +      V +   A++ EE R  L G+    + +  K+   +TD
Sbjct: 117 LP----VVPAKLGQVDAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTD 170

Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL+ A      Q I    + +V    + ++ R L    + V    +++   L  E+  
Sbjct: 171 RFRLSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAG 230

Query: 237 M--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +LIDGEFP    +       +  ++   L  A+ RV++++  R   +++  S  +
Sbjct: 231 RVSTSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVAE-RNAPIRMVFSGQE 289

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D  +A E +++  +   + + FN  YL+E +  I+     +  V  ++ ++ 
Sbjct: 290 VTLSAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAIT-----EPFVRMKMITAV 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V   G+    + + D  ++  Y+L+PMR
Sbjct: 345 KPVEFNGQ---QEADSDESMDYRYLLVPMR 371


>gi|148926821|ref|ZP_01810500.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844546|gb|EDK21653.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 355

 Score = 84.3 bits (207), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELNFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    KYLL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329


>gi|226321069|ref|ZP_03796611.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805]
 gi|226233479|gb|EEH32218.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805]
          Length = 385

 Score = 84.0 bits (206), Expect = 3e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 163/345 (47%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I  + +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIASETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347


>gi|283956180|ref|ZP_06373665.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792334|gb|EFC31118.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 355

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    KYLL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329


>gi|163737540|ref|ZP_02144957.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107]
 gi|161389066|gb|EDQ13418.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107]
          Length = 378

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 90/391 (23%), Positives = 163/391 (41%), Gaps = 36/391 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           + V+ S++   L    ++ E  + IP+    L Q   G L I A+  + E    +     
Sbjct: 16  LKVDISELRAALAWVNKVRETWSRIPILSQNLFQVEGGQLAITATCLDREARQTLSCDTS 75

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
              S  ++ H +  +   L     I      +L T    ++G S       P  ++P+T 
Sbjct: 76  DAWSFVMNGHRVMKVTAGLSGTVTIEHDIAKDLLTLT--ANGMSLAMNVMAPPEDWPTTN 133

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           ++E +   E+  + L   +      ++TEE RYYLNGI++  ++   ++  V T+GHRL 
Sbjct: 134 KQEPLGGIEVGENTLLRALNLVKSCISTEETRYYLNGIYWTSHDGASRM--VTTNGHRL- 190

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR- 240
            A +D+ A       +I PR  +  +  +L++  + + K++   +     + S+ M  R 
Sbjct: 191 -ARLDLEAPNPPF-DVIFPRIGITPLAAMLTANGNQLAKITYRGADKTPTLLSIEMGDRE 248

Query: 241 ----LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
               LIDG +P+Y  VIP S D E   +    + A  R+ +M+       K  +S +K  
Sbjct: 249 LHCKLIDGTYPDYNRVIP-SVDGEQAFDIIIPKSATQRLRLMAGPHDLGCK--ISPEKGT 305

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           MT+   D    +        +   DI FN  YL +                    ++  +
Sbjct: 306 MTIGREDHDGKMSVTYAAKGKSGPDIGFNTLYLAQTT------------------ATMGN 347

Query: 357 VFIRGKDKDSK--NNKDNKVNAFYVLMPMRI 385
           + +R KD  +      +   +   VLMPMR+
Sbjct: 348 IRLRAKDNGAPALATSEAHTDLIMVLMPMRV 378


>gi|57236916|ref|YP_178031.1| DNA polymerase III subunit beta [Campylobacter jejuni RM1221]
 gi|86152375|ref|ZP_01070585.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153999|ref|ZP_01072201.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|205355743|ref|ZP_03222513.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|57165720|gb|AAW34499.1| DNA polymerase III, beta subunit [Campylobacter jejuni RM1221]
 gi|85840672|gb|EAQ57924.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842537|gb|EAQ59750.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|205346520|gb|EDZ33153.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|307746966|gb|ADN90236.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315057443|gb|ADT71772.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni
           S3]
 gi|315931304|gb|EFV10273.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 355

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    KYLL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 329


>gi|255324007|ref|ZP_05365132.1| DNA polymerase III, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|311741698|ref|ZP_07715520.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255298864|gb|EET78156.1| DNA polymerase III, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|311303219|gb|EFQ79300.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 393

 Score = 84.0 bits (206), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 184/404 (45%), Gaps = 44/404 (10%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD  
Sbjct: 9   VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVDEP 68

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELG---TEVNISHGDSNFYLQSFPESEFPST 121
           G I V+  LL DIV  L +       KE E+    ++  ++ G S F L   P  ++P  
Sbjct: 69  GQIAVAGKLLSDIVASLPN-------KEVEISQVDSKALVTCGSSRFELPLIPLDDYP-- 119

Query: 122 KEEEYVYSFELASSVLKNL-VERTH---FAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
              +     E+  ++   L VE  H    A   ++    L G+   I  +D+++   ATD
Sbjct: 120 ---QLPVLPEVTGTIQPQLFVEAIHQVAAAAGKDDTLPMLTGVHMDIRGKDIEMT--ATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRI 228
             RLA+  ++   +   + + ++VP K + E  R L    +  V++++       ++   
Sbjct: 175 RFRLAMRTLEWEPKSPDVEAKLLVPAKTLQETGRSLDPHLNIPVEIAVGTDDNIGADGLF 234

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            L+ ++   + R++D +FPN Q ++P ++     +    L++A+ RVS+++    Q +++
Sbjct: 235 GLHADNRETTTRMLDADFPNVQPLLPKNHTNIASIEVAPLQEAIRRVSLLTDRNAQ-IRM 293

Query: 289 SLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +  ++ ++    D G A E++   ++      I FN  YL + +  I++     D VV
Sbjct: 294 EFADGQVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLGVINT-----DRVV 347

Query: 348 FRL-DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           F   + S  ++ I   ++  + ++D      + N  Y+LMP+R+
Sbjct: 348 FGFTEPSRPAIMIPEPEELPEADEDGNFPTPETNFTYLLMPVRL 391


>gi|171741733|ref|ZP_02917540.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC
           27678]
 gi|283454961|ref|YP_003359525.1| DNA polymerase III, subunit beta [Bifidobacterium dentium Bd1]
 gi|171277347|gb|EDT45008.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC
           27678]
 gi|283101595|gb|ADB08701.1| DNA polymerase III, beta subunit [Bifidobacterium dentium Bd1]
          Length = 374

 Score = 83.6 bits (205), Expect = 4e-14,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 173/394 (43%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 1   MKVEINSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L   ++ ++   +  G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEAGTALVLGKLLADITKSLP--SEKTYLSTD--GSTMTITSGKSTFTMQLMPDNEYPD 116

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 V   +L    S      V +   A++ EE R  L GI      +  K+   +TD
Sbjct: 117 LP----VVPAKLGQVDSPTFMQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSL---SESRIHLNIE 233
             RL+ +      +    P I       G +LR +  S D    + L    ES   L  E
Sbjct: 171 RFRLSRSSFTWTPE---NPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFE 227

Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +     + +LIDGEFP    +          ++  +L  A+ RVS+++  R   ++++ +
Sbjct: 228 NAGRVSTSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVAE-RNAPIRMAFA 286

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++    D  +A E +++  +   + + FN  YL+E +  IS     +  V  ++ 
Sbjct: 287 GQELTLSAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMT 341

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   V   G+    + + D  ++  Y+L+PMR 
Sbjct: 342 TAVKPVEFNGQ---QEADSDESMDYRYLLVPMRF 372


>gi|229818504|ref|YP_002880030.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333]
 gi|229564417|gb|ACQ78268.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333]
          Length = 378

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 93/393 (23%), Positives = 174/393 (44%), Gaps = 27/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  V+R  + + +    R +  + +IPV   V ++A+  G L + +   E+     I A
Sbjct: 1   MKFRVDRDVLADAVTWTARTLPTRPSIPVLAGVRIEADPQGALRLSSFDYEVSALSEIAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEF 118
            V   G++ VS  LL +I R L  G  +      EL GT V ++ G S F L + P  ++
Sbjct: 61  DVPDAGTVLVSGRLLAEISRALP-GKPVDV----ELDGTRVVLTCGSSRFTLLTMPLDDY 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS        S  + +  L   V +   A + +E    L G+   I  E  KL  +ATD 
Sbjct: 116 PSLPAMPPA-SGTVDAGTLAEAVAQVTIAASRDETLPLLTGVRVEI--EGDKLTLLATDR 172

Query: 179 HRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----SESRIHLNIE 233
           +RLA+ E+    A      + +V  + + E+ + L+S   +V +SL     +  +     
Sbjct: 173 YRLAMRELSWNPASPGLEATALVRARTLSEVAKSLTSA-GAVSISLPNGDGKDLVGFEAG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               +  L++G++P  + + P +       +   L +A  RVS+++  R   ++L+ S  
Sbjct: 232 GRRTTSLLVEGDYPPVRRLFPEATTSHAVASTNELVEAARRVSLVAE-RNTPIRLTFSEG 290

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +     D  +A E++       P+   FN  YLL+ +  + ++         RL  +
Sbjct: 291 QVVLEAGQGDDAQASEAIESTLTGEPITTAFNPGYLLDGLGVVGTE-------FTRLSFT 343

Query: 354 NSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + +    + G+ K   ++ D  V   Y++ P+R
Sbjct: 344 HGTKPAVLTGQPKLEDDDADRDVFR-YLIQPIR 375


>gi|297243221|ref|ZP_06927156.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis AMD]
 gi|296888755|gb|EFH27492.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis AMD]
          Length = 374

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 95/396 (23%), Positives = 172/396 (43%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + ++A +G L++ A   +I     I A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDARPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI +   L+ DI + L   A+ ++ K       + I+ G S F LQ  P  E+P 
Sbjct: 61  VDEEGSILILGKLMADITKSLP--AEKTYLKSE--NNTLTITSGKSTFTLQLMPLGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +       ++ +      V +   + + EE R  L GI   I  ED  +   +TD  R
Sbjct: 117 LPKLPNKLG-QVDAPTFIQAVNQASVSTSREENRPVLTGI--RIQFEDDTVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSM-- 237
           L+ +      +   + S  + R   G +LR I  S D    V      IH N E  S+  
Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTR---GSLLRDIAHSLDDHQNVI-----IHFNEEDKSLLG 225

Query: 238 --------SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                   + ++IDGEFP+   +          +N   L  A+ RVS+++  R   +++ 
Sbjct: 226 FENSGRTSTSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVAE-RNAPIRMI 284

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S+ +L ++    D  +A E +++  +   + + FN  YLLE +  I      +  V  +
Sbjct: 285 FSNQELTLSAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMK 339

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++   V   G+    +++ D   +  Y+L+PMR 
Sbjct: 340 MATAVKPVEFNGQ---QESDGDESTDYRYLLVPMRF 372


>gi|312147910|gb|ADQ30569.1| DNA polymerase III, beta subunit [Borrelia burgdorferi JD1]
          Length = 385

 Score = 83.6 bits (205), Expect = 5e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347


>gi|218249720|ref|YP_002374949.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7]
 gi|218164908|gb|ACK74969.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7]
          Length = 385

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDKKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347


>gi|260437690|ref|ZP_05791506.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809916|gb|EFF69121.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876]
          Length = 365

 Score = 83.2 bits (204), Expect = 6e-14,   Method: Compositional matrix adjust.
 Identities = 92/405 (22%), Positives = 181/405 (44%), Gaps = 64/405 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++L+ +    R +  + T+ +   +L+ A +  +++ A+  E+ I   I   
Sbjct: 1   MKIVCTKSELLKGVNITLRAVPVRTTMTILECILIDATELDIKLTANDMELGIETTIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES---E 117
           +   G I + A    DI+RKL D             +E+ I   DSNF      E     
Sbjct: 61  IIEKGKIAIEAKFFADIIRKLPD-------------SEITI-ETDSNFNASITCEKSVFN 106

Query: 118 FPSTKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
            P+   E++ Y           ++   LK L+ +T F++   E    + G  F + E++L
Sbjct: 107 IPARDGEDFSYLPYIEKNNMITISQFDLKELIRQTIFSIGDNESNLIMTGELFEVTEDNL 166

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRI 228
           K+  V+ D +R+++  V +   I     +IVP K + EI +I++   +S V V  S++ I
Sbjct: 167 KV--VSLDRYRVSIRNVKL-NNIYNDIKVIVPGKTLNEISKIITGDAESMVDVYFSDNHI 223

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS----------IM 278
               +   +  RLI+GEF     ++    + ++ +N   L   +DR +          ++
Sbjct: 224 LFEFDKTIVISRLIEGEFFKINQMLSKDYETKITINKRELLDCIDRATLFVKEGNKKPVI 283

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
             +   +VK++++S           +GK  E +++      + I FN K++++ +     
Sbjct: 284 FDIEDGSVKINITS----------TVGKMNEEIDIEKEGSDIKIGFNPKFVIDAL----- 328

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             V+DDE +       S  F+  K   +  +KDN+    Y+++P+
Sbjct: 329 -RVIDDETI-------SMTFMNAKSPCTIRDKDNR--YIYLILPV 363


>gi|221218172|ref|ZP_03589638.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a]
 gi|224532522|ref|ZP_03673147.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23]
 gi|224533532|ref|ZP_03674121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a]
 gi|225549474|ref|ZP_03770440.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a]
 gi|221192120|gb|EEE18341.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a]
 gi|224512594|gb|EEF82970.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23]
 gi|224513205|gb|EEF83567.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369751|gb|EEG99198.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a]
          Length = 385

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLAFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347


>gi|226321747|ref|ZP_03797273.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26]
 gi|461953|sp|P33761|DPO3B_BORBU RecName: Full=DNA polymerase III subunit beta
 gi|454040|gb|AAA58942.1| beta subunit of DNA polymerase III [Borrelia burgdorferi]
 gi|226232936|gb|EEH31689.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26]
          Length = 385

 Score = 83.2 bits (204), Expect = 7e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347


>gi|134122656|dbj|BAF49632.1| putative DnaN [Microcystis aeruginosa]
          Length = 209

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 47/173 (27%), Positives = 100/173 (57%), Gaps = 6/173 (3%)

Query: 175 ATDGHRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHL 230
           ATDGHRLAV +  +  V   +   ++ +P +A+ E+ R++++K +  ++ + + +S++  
Sbjct: 5   ATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQVIF 64

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            +    ++ R ++G +P Y  +IP S ++ L ++   L + ++ V+++S  +   VK SL
Sbjct: 65  EMGEQRLTSRKLEGAYPTYNQLIPKSFERSLVLDRKQLIRCLELVAVLSDQKNNLVKFSL 124

Query: 291 SSD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             +  +L + V++PD+G A ESM         DI FN KYL++ +  + ++++
Sbjct: 125 DGENSRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 177


>gi|154174460|ref|YP_001407306.1| DNA polymerase III subunit beta [Campylobacter curvus 525.92]
 gi|112803507|gb|EAU00851.1| DNA polymerase III, beta subunit [Campylobacter curvus 525.92]
          Length = 355

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/345 (20%), Positives = 166/345 (48%), Gaps = 23/345 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + ++ +  ++ +    +E+++   ++ H+ + A +G+L I+A+  EI +   + ++
Sbjct: 1   MKVLINKNVLESIVTNTNPYLEKRDLSAITSHIYIAAKNGVLNIRATDHEIGLAYKL-SN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V +   G  T +   L DI++ L+D   I       +   + I   +S + L  +   +F
Sbjct: 60  VKITDEGYATANGKKLLDIIKSLKDDEVIL----ETVNNYLYIKQKNSKYKLPMYKFEDF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E    F++ + +L   +++   ++ +   ++ LNG    I +  + +  V TD 
Sbjct: 116 PEFPSSEGKSKFDVDAVMLGRSLKKILPSIDSNNPKFELNGALLDIRQNFINI--VGTDT 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RL++ + +   +  +  SII+P+KA+ EI ++   +   +++   E+ +     +    
Sbjct: 174 KRLSIFKFETPTE--REFSIIIPKKAINEIQKLFFDR---IEIYYDENILIAQSANFEFF 228

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G++P+Y+ V+P    K L++N   +   +  +S++S      +K++ + D +   
Sbjct: 229 TKLINGKYPDYERVVPKEIKKRLKLNRDKMIDGIRTISMLS----DQMKITFTKDSITFE 284

Query: 299 V---DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               DN +    IE      +E  + I    +YLL+ + +I  D+
Sbjct: 285 SIIEDNSEAKTTIEYQTGLEDEIFIGI--KNRYLLDFLTSIEDDD 327


>gi|239624132|ref|ZP_04667163.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520518|gb|EEQ60384.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 372

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 87/392 (22%), Positives = 185/392 (47%), Gaps = 36/392 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  I+  +    + +  K T+ +   +L+ A+ G +++  +  E+ I   +   
Sbjct: 1   MKLIFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTGEIKLTGNDMELGIETKVEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF- 118
           +   G I + A L  +I R+L  + A ++   +++  T   IS  +S F +Q     EF 
Sbjct: 61  ILEHGKIALDAKLFSEITRRLSSENASVTIESDDKFNT--TISCENSVFNIQGRDGEEFA 118

Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             P  ++++Y+    L+   LK ++++T F+++  +    + G  F +NE  LK+  V+ 
Sbjct: 119 YLPYIEKDKYIC---LSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--VSL 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235
           DGHR+++ +V +         +IVP K + EI +IL    +  V +  S + I    ++ 
Sbjct: 174 DGHRISIRKVRLKDHYDD-TKVIVPGKTLSEISKILGGDNEKEVLIYFSANHILFEFDNT 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSLSS 292
            +  RLI+GE+     ++    + ++ VN       ++R +I+  +R    K   +++  
Sbjct: 233 VVVSRLIEGEYFRINQMLSSDYETKVSVNKKEFLNCIERATIL--IRENDKKPLIINIGD 290

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLD 351
           + + M + N   G     + ++     + I FN K+L++ +       V+DDE +   + 
Sbjct: 291 NSMEMKL-NSSFGSMNADLMIHKTGKDIMIGFNPKFLIDAL------RVIDDEEINIYMM 343

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +  S  FI          KD++ N  Y+++P+
Sbjct: 344 NPKSPCFI----------KDDEENYIYLILPV 365


>gi|203287880|ref|YP_002222895.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1]
 gi|201085100|gb|ACH94674.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1]
          Length = 386

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 71/309 (22%), Positives = 147/309 (47%), Gaps = 18/309 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           +  A  II  +N   +   +LL+     L IKA+   I     IP       ++ ++A  
Sbjct: 17  IDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIVSTDNFNVLINASN 76

Query: 74  LYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN---FYLQSFPESEFPSTKEEEYVY- 128
           L D V+ L    ++   FKE+E   ++ I   D+N   +      E  F + + E Y Y 
Sbjct: 77  LADAVKALNLYDELKMKFKEDENKLDI-IGESDNNNENYINDHLSEPTFSTEEIENYNYD 135

Query: 129 --------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +FEL    LK ++ +  F+ + +E +  LNGI+F  +   + L  V+T+ +R
Sbjct: 136 INDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYFTKDSNSV-LTLVSTNSYR 194

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +++ + D++ +  +  + IVP K    +L+ + + +  +K  +S+ + ++   +  ++  
Sbjct: 195 MSIYKTDLIFE--EDVNFIVPVKMFN-LLKQMITGEGIIKFKVSDKKFYVEFNNYKIACS 251

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI G +P+Y+++IP        ++    +  + RV+  +  R + V L+ S ++L +  +
Sbjct: 252 LISGNYPDYESIIPNEYTNRALIDVFMFKDRLSRVNSYTDKRSKKVILNFSVNQLKLMAE 311

Query: 301 NPDMGKAIE 309
           +P  G+  E
Sbjct: 312 DPITGRKGE 320


>gi|15594783|ref|NP_212572.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31]
 gi|195942017|ref|ZP_03087399.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi 80a]
 gi|216264913|ref|ZP_03436905.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a]
 gi|223888830|ref|ZP_03623421.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b]
 gi|2688357|gb|AAB91514.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31]
 gi|215981386|gb|EEC22193.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a]
 gi|223885646|gb|EEF56745.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b]
          Length = 385

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 80/345 (23%), Positives = 162/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAI 347


>gi|319955762|ref|YP_004167025.1| DNA polymerase iii, beta subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319418166|gb|ADV45276.1| DNA polymerase III, beta subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 355

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 88/344 (25%), Positives = 164/344 (47%), Gaps = 23/344 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI  ++  I  +L +    +E+K+   ++ HV  +       ++ +  EI +       
Sbjct: 1   MKIRAQKQVIESILINLQPFLEKKDASQITSHVYFETGPDRCIVRGTDNEIGLQIVTREF 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  GS T +   L DI+R L+D   I    +N L     I    S F L  F    FP
Sbjct: 61  EVDHPGSFTANGKKLLDIIRILRDDEIILELLDNALM----IKQQHSKFKLPIFDAEAFP 116

Query: 120 STKEEEYVYSFELAS-SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           S  E +      L S ++++NL + T  A+ T   +Y LNG   +I  +   L  V TD 
Sbjct: 117 SFPEIDGKPKISLDSMNLIRNLKKITP-AIDTNNPKYELNGALINIKNDKTDL--VGTDT 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLAVA +   ++  +  ++I+P+KA+ EI ++   +   +++   E+ + +  +     
Sbjct: 174 RRLAVATIPNNSE--EELALILPKKAILEIQKLFLDQ---IEIHYDETTLIITNDDYFFF 228

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL--- 295
            RLI+G+FP+Y+ +IP S   ++ +    + +A+  V+ +++     +K++  SD +   
Sbjct: 229 TRLINGKFPDYERIIPRSLKYQIELPKKEMLEAIRLVTTIAN----DIKITFLSDAILFN 284

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
            ++ DN +    IE +N    +   +I  N +YLL+ +  +  D
Sbjct: 285 ALSDDNVEAKTEIE-LNTGIPDR-FEISLNSRYLLDFLAQVDHD 326


>gi|257413824|ref|ZP_04744342.2| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82]
 gi|257202157|gb|EEV00442.1| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82]
          Length = 388

 Score = 82.8 bits (203), Expect = 8e-14,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 168/344 (48%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++L  +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I   
Sbjct: 19  MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 78

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A +  +IVRKL D + ++   +    T +       N   +S  + S  P
Sbjct: 79  IAERGVIALDAKIFSEIVRKLPD-SDVTIETDASFKTTITCEKAKFNIVGKSGDDFSYIP 137

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  E +    ++   LK ++ +T F++A  +    + G  F I E DLK+  V+ DGH
Sbjct: 138 YIERNEPIV---MSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGH 192

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++  +++    +    ++VP K + E+ +IL  S +  V + L+++ I    E+ ++ 
Sbjct: 193 RISIRNIELKNNYSH-KKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVV 251

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+   + ++    + ++++N   L   +DR +++      + + ++++   + +
Sbjct: 252 SRLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMEL 311

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            + N  +G   E +++      + I FN K+ ++ +  I  +EV
Sbjct: 312 KI-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVIDEEEV 354


>gi|161621802|ref|YP_054725.2| DNA polymerase III subunit beta [Propionibacterium acnes KPA171202]
 gi|289424627|ref|ZP_06426410.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187]
 gi|289155324|gb|EFD04006.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187]
          Length = 386

 Score = 82.8 bits (203), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 179/405 (44%), Gaps = 41/405 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 1   MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           VD  G   VS  LL DI R L +       K  ++ T+   +++  G + F LQ+ P  E
Sbjct: 61  VDEPGESLVSGKLLADIARSLPN-------KPVQITTDPAKMDLVCGSARFTLQALPVDE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P   +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD
Sbjct: 114 YPDLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATD 170

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +   
Sbjct: 171 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 229

Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +  +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   ++
Sbjct: 230 GDGANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 288

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341
           + ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +   
Sbjct: 289 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 345

Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
               V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 346 --PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 384


>gi|224532178|ref|ZP_03672810.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116]
 gi|224511643|gb|EEF82049.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116]
          Length = 386

 Score = 82.4 bits (202), Expect = 9e-14,   Method: Compositional matrix adjust.
 Identities = 81/346 (23%), Positives = 159/346 (45%), Gaps = 25/346 (7%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I   +  A  II  +N   +   +L++     L IK++   I     IP   +   
Sbjct: 10  ETNQITSEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTIPIISETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKENELGTEV--NISHGDSNFYLQSFPESEFPSTK 122
            + ++A   YD V+      +I   F E+    E+   +       YL    E  F   +
Sbjct: 70  KVLINASNFYDAVKAFSLYKKIKIVFNEDNSKLEIMGELKDEKEEEYLDHLKEPTFSYEE 129

Query: 123 ---------EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
                     E+Y +  E+    LK ++ R  F+   +E +  LNG++F   +ED KL  
Sbjct: 130 IENYNYDMINEDYTFEIEVKQKSLKKVISRIAFSAHFDESKNVLNGVYF-TKDEDSKLLL 188

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V+T+GHR+++ + +++  I +  + IVP K +   L+ L S +  VK+  S+ + ++  +
Sbjct: 189 VSTNGHRMSICKTEVI--IEEAVNFIVPVK-IFNFLKHLMSGEGVVKIKSSDKKFYVEFD 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +  ++  LI G +P+Y+++IP     +  V+ + L+  + RV++      ++ KL L+  
Sbjct: 246 NYKIACSLIIGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVD---KSRKLVLTFS 302

Query: 294 KLCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           +L + +   D+  G+     I++ N  Y+     +  N  Y +E I
Sbjct: 303 ELQLKLLGEDLITGRKGEFFIKNPNYVYDGSDEIMAINISYFVEAI 348


>gi|154483924|ref|ZP_02026372.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC
           27560]
 gi|149735415|gb|EDM51301.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC
           27560]
          Length = 366

 Score = 82.4 bits (202), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 84/346 (24%), Positives = 162/346 (46%), Gaps = 14/346 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++SD++  +    + +  K T+ +   +L+ A +G ++  A+  E+ I   +   
Sbjct: 1   MKLVCKKSDLITGINIVMKAVSSKTTMSILECILIDATEGEIKFTANDMELGIETKVEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI + A +  +IVRKL D   +    +    T+ NI+  +S F +      +F  
Sbjct: 61  IIEAGSIAIDAKIFSEIVRKLPDNDVVIEVNDE---TKANITCENSKFNILVKSADDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L+   LK L+ +T F +   +    L G  F +    LK+  VA D  R
Sbjct: 118 LPEIEKKDKITLSQFALKELIRQTIFTVNDADKNKILTGELFEVMGNRLKV--VALDKFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A+  +++         ++VP K++ EI +IL+   D  V +  + + I    +   +  
Sbjct: 176 IAIRNMELKEDYGNF-KVLVPGKSLNEISKILNGGVDDEVNIYFTSNHILFEFDETKVVS 234

Query: 240 RLIDGEFPNYQNVIP-CSND--KELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKL 295
           RLI  E  NY +     SND   ++ +N   +   +DR +++      + V L++   ++
Sbjct: 235 RLI--ECSNYFDTDKMISNDYKTKITINKKEMANCIDRATLLIKEGDKKPVFLTIKDTEM 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            +++ N  +G   ES+ +      M I FN K+L++I+  + S+EV
Sbjct: 293 ELSI-NTFIGSMDESIPIVREGSDMMISFNPKFLIDILRVLDSEEV 337


>gi|312193899|ref|YP_004013960.1| DNA polymerase III subunit beta [Frankia sp. EuI1c]
 gi|311225235|gb|ADP78090.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c]
          Length = 387

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 91/403 (22%), Positives = 168/403 (41%), Gaps = 36/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---------EI 51
           MK  VER +  E +    R +  ++    +  VL+    GLL + A+GP         E+
Sbjct: 1   MKFRVERDEFTEAVAWTARSLPSRSATATNQQVLM----GLL-LDATGPGLVVAAFDYEV 55

Query: 52  EITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                + A+V   G       +L DI ++L          +N+L     I+ G++ F LQ
Sbjct: 56  AAQATLEATVHEEGRALAPGRMLADITKQLPAAPVEVETDDNKL----VITCGNARFTLQ 111

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
           + P  E+  T       +  +        V +   A   ++    L G+   I  + L L
Sbjct: 112 TLPVDEY-PTLPPLPPITGHIEGGAFGAAVAQVAVAAGKDDTLPVLTGVRLEIEGDTLTL 170

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----E 225
            A  TD +RLAV  +           + ++P + + +  R L    + V ++L      E
Sbjct: 171 AA--TDRYRLAVRTLKWSPSSPDAAGVALIPARTLLDTARSLGGGTAQVAIALGTGPSGE 228

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           +           + RL+DG+FP Y+ ++P S     +     L +AV RV++++  +   
Sbjct: 229 ALAGFAGNHRQTTTRLVDGQFPPYRKLLPDSCPLTAQAEKGPLLEAVKRVALVAP-KTAP 287

Query: 286 VKLSLSSDKLCMTVD-NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           V+L+ S+D L +    +    +A E++   Y+   +++ FN  YL + +  + S     D
Sbjct: 288 VRLAFSADHLRLEAGSHGGEAQASETLPATYDGPDLEVAFNPAYLQDALTAVES-----D 342

Query: 345 EVVFRLDSSNSSVFIRGKDK--DSKNNKDNKVNAFYVLMPMRI 385
           +V F   S+  +     K      K   D   +  Y+LMP+++
Sbjct: 343 QVEFGFASAEDAEVAAKKPAILTGKGAGDELPDYRYLLMPIQL 385


>gi|91203533|emb|CAJ71186.1| similar to DNA polymerase III beta subunit [Candidatus Kuenenia
           stuttgartiensis]
          Length = 366

 Score = 82.0 bits (201), Expect = 1e-13,   Method: Compositional matrix adjust.
 Identities = 78/324 (24%), Positives = 149/324 (45%), Gaps = 12/324 (3%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFK 91
           V L+  D   E+ A+  E+ +   IPA + +  G I + A    +I R+     +IS   
Sbjct: 33  VKLEVADNCAELTATDLEVLVKYRIPAKACEGEGGIVLPASRANNIFREWAGNEEISVTV 92

Query: 92  ENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATE 151
           E        +     +F +      +FP+  + +     E+   +L  +VE+  +A+++ 
Sbjct: 93  E---AGHCTLQSKGGSFKILGDDCLQFPNITKTDVTSFVEIDGEILGKMVEKVAYAVSSI 149

Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211
           +     +GI   I  + + +  V +D +RLAV +  +        S IV  K +  + R 
Sbjct: 150 KALSIYSGISVKIFGDTIIM--VGSDMNRLAVVKRKVRNPENVSMSGIVGVKCLAFLQRF 207

Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
           +S    ++ V + ES+IH   E   +  +LI+G++PNY  VIP +NDK++ VN   L   
Sbjct: 208 VSECKGTLMVGMGESQIHFIGEKGEVISQLIEGKYPNYDEVIPKNNDKKIEVNRDELLSI 267

Query: 272 VDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           V   S +++   + V+ SL+ +KL +     ++G+A   +   Y+       FN  Y+L+
Sbjct: 268 VRMASFVTNDEYRVVEFSLTKNKLSIFSSAANVGEAALEIAAQYDGPDYTNTFNPDYILD 327

Query: 332 IIDNISSDEV------VDDEVVFR 349
            +     + +      +DD  +F+
Sbjct: 328 FLRASDCETITIELGEIDDAALFK 351


>gi|256830859|ref|YP_003159587.1| DNA polymerase III subunit beta [Desulfomicrobium baculatum DSM
           4028]
 gi|256580035|gb|ACU91171.1| DNA polymerase III, beta subunit [Desulfomicrobium baculatum DSM
           4028]
          Length = 384

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 90/376 (23%), Positives = 170/376 (45%), Gaps = 29/376 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + ++++ L  A  II  K        V L+A    + I A+   IE  G  PA 
Sbjct: 1   MFLKVRKEEVIDGLLKASNIIPSKTGAAYLRTVWLKAEGDTISILATDSSIEFVGVYPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G + V      +++R+L  G +I+  K +     ++I  G   + L +   S F  
Sbjct: 61  ISDGGLVGVQGKKFCELMRRLPPG-EITL-KLDPSAKHLHIEQGRRKYKLPANESSWFQD 118

Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI-FFHINEEDLKLCAVA 175
             P   +   ++S +L     K +++R  F +A +E    +N I F  +  +D+++C + 
Sbjct: 119 FNPFPAQNAVLWSGDL----FKEIIDRIAFCIADDEDLTSMNCIKFAPVENDDVEICGL- 173

Query: 176 TDGHRLAV---AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +GH+  +   +  DI A + +    +V +K + EI + L++ +  +++SLS+ R+ L  
Sbjct: 174 -NGHQFGLLRFSNPDIRAVLGQ-DGFLVSKKYLLEIRKWLTNDE--IEISLSDKRLFLRT 229

Query: 233 ESL--SMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           E+   S S+ L    F +Y+N I    D+    L V+   L  A+DR+ + ++   +A  
Sbjct: 230 ENRKESFSLPLKAYVFADYRNFINQYKDRFASNLVVDRHELTDALDRIFVFNTEANKATF 289

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
                ++L +     D+G+  E ++  Y      I    K +LEI+ +      V D + 
Sbjct: 290 FDFGPEELSLYCQGQDIGEGTELISCQYQGELSKIALPTKVILEILGHF-----VSDSLT 344

Query: 348 FRLDSSNSSVFIRGKD 363
           F     +    I GKD
Sbjct: 345 FSFVGPSEPCRITGKD 360


>gi|121612492|ref|YP_999721.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167004698|ref|ZP_02270456.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249053|gb|EAQ72015.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 355

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 167/346 (48%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     +   ++ + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----VRQKNTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + ++L  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMRLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    K+LL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329


>gi|196048109|ref|ZP_03115287.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|196021365|gb|EDX60094.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
          Length = 377

 Score = 82.0 bits (201), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 82/356 (23%), Positives = 169/356 (47%), Gaps = 22/356 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ ++ ++ +++ L    +   + N IP+   + ++A +  + +  S  E  I   I + 
Sbjct: 1   MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60

Query: 60  ---SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV+  G+I +    + DIVRKL +G     FK  + G  +++S  +S F L + P  
Sbjct: 61  DNLSVEKEGAIVI-PKTISDIVRKLPNGEIC--FKLQKKGL-LDVSTKNSKFSLNTLPSE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P+ ++ ++++   +  + L   VE T++  AT++ R  L GI   I  +  K+   AT
Sbjct: 117 EYPNFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGIEIKITNK--KIAFSAT 174

Query: 177 DGHRLA----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           +GH L+      E D   +   + + IVP K + + ++  +  + ++ +   E+ + L  
Sbjct: 175 NGHLLSQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFN--NDTLTLGFEENAVTLFS 232

Query: 233 ESLSMSVRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKL 288
            +  +  +LI+G FP+++  +  P S       +   L + +++V I+ S      A  +
Sbjct: 233 STQYIKTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASI 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI--CFNYKYLLEIIDNISSDEVV 342
              + +L ++ +N   G+ +       N    DI   FN  YLL  + ++S +EV 
Sbjct: 293 MYENSELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSGEEVT 348


>gi|291536989|emb|CBL10101.1| DNA polymerase III, beta subunit [Roseburia intestinalis M50/1]
          Length = 370

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 73/344 (21%), Positives = 168/344 (48%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++L  +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I   
Sbjct: 1   MKLICSKSNLLYGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A +  +IVRKL D + ++   +    T +       N   +S  + S  P
Sbjct: 61  IAERGVIALDAKIFSEIVRKLPD-SDVTIETDASFKTTITCEKAKFNIVGKSGDDFSYIP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  E +    ++   LK ++ +T F++A  +    + G  F I E DLK+  V+ DGH
Sbjct: 120 YIERNEPIV---MSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++  +++    +    ++VP K + E+ +IL  S +  V + L+++ I    E+ ++ 
Sbjct: 175 RISIRNIELKNNYSH-KKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+   + ++    + ++++N   L   +DR +++      + + ++++   + +
Sbjct: 234 SRLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMEL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            + N  +G   E +++      + I FN K+ ++ +  I  +EV
Sbjct: 294 KI-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVIDEEEV 336


>gi|282853040|ref|ZP_06262377.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139]
 gi|282582493|gb|EFB87873.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139]
          Length = 386

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 97/405 (23%), Positives = 178/405 (43%), Gaps = 41/405 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 1   MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           VD  G   VS  LL DI R L +       K  ++ T+   +++  G + F LQ+ P  E
Sbjct: 61  VDEPGESLVSGKLLADIARSLPN-------KPVQITTDPAKMDLVCGSARFTLQALPVDE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P         +  + +SV    V +   A   +E+     G+   IN E L L  +ATD
Sbjct: 114 YPDLPHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATD 170

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +   
Sbjct: 171 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 229

Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +  +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   ++
Sbjct: 230 GDGANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 288

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341
           + ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +   
Sbjct: 289 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 345

Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
               V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 346 --PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 384


>gi|284925305|gb|ADC27657.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 355

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 76/346 (21%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + ++L  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMRLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    K+LL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329


>gi|331004665|ref|ZP_08328127.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409592|gb|EGG89032.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 369

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 87/394 (22%), Positives = 187/394 (47%), Gaps = 40/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +  +++ ++  LG   + +  K +  +   +L+ A D  + + A+  E+ I   +   
Sbjct: 1   MNLKFQKAQLVNALGIVMKAVSTKTSSVILESILITAKDNRVFLDATDTELSIQTEVDGI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEF- 118
           +   G + ++A L  DIVRK ++  + I    + E  + +      + F +      EF 
Sbjct: 61  IVNPGGVVLNAKLFSDIVRKFENTDSLIELDVDKEFKSTIRCEQ--AVFNIMGIDPVEFI 118

Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             P   +++++   +L+   LK ++ +T F+ A  +I   + G    + +   K   V  
Sbjct: 119 PMPQIDKDDFI---KLSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNIAKF--VTL 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--- 233
           DGHR+++  +++          +VP K++ E++RI+ S D+   VS+  S+ H+  E   
Sbjct: 174 DGHRMSIRNIELNGDFENQ-RCVVPIKSLQEVMRIIDS-DTQKDVSIYFSKDHILFEFDK 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSL 290
           +L +S R++DGE+   + ++    D ++ V+   L+ A+++  I+  +R    K   + +
Sbjct: 232 TLVLS-RILDGEYFRIETMLSNDYDTKVTVSRNRLQSAIEQAMIL--IRENEHKPLIMEI 288

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FR 349
            S  L ++V N  +G     +N+  +   + I FN K+L++ +      +V+DD+ V   
Sbjct: 289 ESSLLTLSV-NSSLGFMDAKVNIEKSGNDLKIAFNPKFLVDAL------KVIDDDFVNIY 341

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             ++ S  FIR          D+K    Y+++P+
Sbjct: 342 FTNAKSPCFIR----------DDKNTYTYLILPV 365


>gi|261839664|gb|ACX99429.1| DNA polymerase III subunit beta [Helicobacter pylori 52]
          Length = 374

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 85/352 (24%), Positives = 161/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++D  L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKDQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ V+     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|217034368|ref|ZP_03439783.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10]
 gi|216943163|gb|EEC22633.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10]
 gi|315586816|gb|ADU41197.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori
           35A]
          Length = 374

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 161/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+   G L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKGKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|300780157|ref|ZP_07090013.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300534267|gb|EFK55326.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 418

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 86/397 (21%), Positives = 175/397 (44%), Gaps = 28/397 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+ + +    R +  KNT PV   V++ A+D  LE      E+     I A VD  
Sbjct: 32  VHKDDLSDAVAWVARNLPTKNTQPVLRAVVITADDNGLEFAGFDYEVSTRVRIAAEVDQP 91

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G + V+  L+ DIV  +          +N+    + +  G + F L   P  ++P     
Sbjct: 92  GRVAVAGKLMADIVSNMPAKPIDVSVADNQ---RLLLQGGSARFELPLMPLDDYPQLPVL 148

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             V    L ++   + + +   A   ++    L G+   ++   ++L   ATD  RLA+ 
Sbjct: 149 PEVTG-TLDTTTFVDAITQVASAAGRDDTLPMLTGVHMEVSGNRVQLA--ATDRFRLALR 205

Query: 185 EVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIESL 235
            ++   +   + + +++P K + +  R L +  +  V++++        +    L+  + 
Sbjct: 206 SLEWEPKAPDVEAKLLIPAKTLLDNARTLDTHLEEPVEIAVGSGDNVGGDGLFGLHSGNR 265

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + R++D EFPN Q ++P ++     V    L +A+ RVS+++    Q +++     ++
Sbjct: 266 ETTTRMLDAEFPNIQPLLPKTHTSMASVEIAPLMEAIRRVSLVADRNAQ-LRMHFQPGEV 324

Query: 296 CMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSS 353
            +     + G+A ES+   +     + I FN  YL + ++ I +     D VVF   ++S
Sbjct: 325 TLFASGAESGEASESLQCAFTGADELLIAFNSGYLRDGLNVIHT-----DRVVFGFTEAS 379

Query: 354 NSSVFIRGKDKDSKNNKDNK-----VNAFYVLMPMRI 385
             ++ +   D+  +   D        N  Y+LMP+R+
Sbjct: 380 RPAIMVPEPDELPEAAADGSFETPATNFTYLLMPVRL 416


>gi|328905787|gb|EGG25563.1| DNA polymerase III subunit beta [Propionibacterium sp. P08]
          Length = 386

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 96/405 (23%), Positives = 178/405 (43%), Gaps = 41/405 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ER  + E +  A R +  + T+P+   + ++A D  + + AS  E      + A 
Sbjct: 1   MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           VD  G   VS  LL DI R L +       K   + T+   +++  G + F LQ+ P  E
Sbjct: 61  VDEPGEALVSGKLLADIARSLPN-------KPVRITTDPAKMDLVCGSARFTLQALPVDE 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P   +     +  + +S+    V +   A   +E+     G+   IN E L L  +ATD
Sbjct: 114 YPDLPQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATD 170

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +   
Sbjct: 171 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 229

Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +  +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   ++
Sbjct: 230 GDGANGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 288

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341
           + ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +   
Sbjct: 289 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 345

Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
               V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 346 --PYVHFSFTAPGKPCLVTGLNDLDGKPETDYR----HVIMLMRL 384


>gi|291457887|ref|ZP_06597277.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419431|gb|EFE93150.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 373

 Score = 81.6 bits (200), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 68/280 (24%), Positives = 133/280 (47%), Gaps = 6/280 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  ++  +  A + +  K+T+P+   +LL A++G + +  +  E  I       
Sbjct: 1   MKLQFQKDALISSINIAIKAVPSKSTMPIMECLLLDASNGKICLVGNDTEFGIETVCRGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + + A L  +I++KL    ++S   E++      I    S F +     +EF  
Sbjct: 61  ILEAGKVALDARLFSEIIKKLPQDNELSVLIESDEHFVTTIRCEKSVFKISGKDGNEFTM 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   S  L+   LK+ + +T F++A  E    + G F  +  +   +C++  DGHR
Sbjct: 121 IPGIDRSNSVSLSQFTLKSFINQTIFSVALNESNKKMTGEFLEVKGDLFSVCSL--DGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLSMS 238
           +++    +     +M + IVP KA+ EI RILS   KD  V +  +++ I    +   + 
Sbjct: 179 ISIRRTQLKESCPEMKA-IVPGKALIEISRILSGGLKD-EVMIYFTKNHILFEFDDTLVL 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
            RLIDGE+ +   ++    D ++ VN   L  +++R +I 
Sbjct: 237 SRLIDGEYFHVAQMLSEDYDTKITVNRRELLDSIERSTIF 276


>gi|315452737|ref|YP_004073007.1| DNA polymerase III subunit beta [Helicobacter felis ATCC 49179]
 gi|315131789|emb|CBY82417.1| DNA polymerase III, beta subunit [Helicobacter felis ATCC 49179]
          Length = 356

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 66/309 (21%), Positives = 143/309 (46%), Gaps = 18/309 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++++   L        +K+ + ++ HV ++A    L  +A+  E+ +   +   
Sbjct: 1   MKFIIAKTELEAALKDLIAFTNKKDMVNITSHVCIEAKTDALIFQANDLEMGLCLTLNIP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  ++A  L DI+ KL+ G  +   ++N +    ++    S F L    +  FPS
Sbjct: 61  AQETGSAVLNAKYLLDIISKLEKGDLLLESQDNFM----HVHFKRSKFKLPLLDKEYFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +++       S L +  ++    + T   +Y  +G+   + +E+L+L  VATD  R
Sbjct: 117 FPTYDHLPVVYFDDSTLSDYFKKLAQVITTNASKYEFSGVLLAL-QENLEL--VATDTKR 173

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L+V +++I     A    +I+P++A+ E+ ++        ++   ++ I     S+ +  
Sbjct: 174 LSVVQMEIGGTTSADRQELILPKRAMLEVAKLFR---GDFEMRYDKNMIFFKNASMVLFA 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
           +LI G++P+YQN+IP +   +L  N  + + A++    + +      K+    DK+    
Sbjct: 231 KLISGKYPHYQNIIPSTFAHQLECNTQDFKDAINITQALGAT----TKIIFRPDKIEFET 286

Query: 297 MTVDNPDMG 305
           +  +NP   
Sbjct: 287 LQTENPSFA 295


>gi|296118605|ref|ZP_06837183.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968504|gb|EFG81751.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM
           20306]
          Length = 398

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 179/398 (44%), Gaps = 31/398 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +G   R +  K   PV   ++  A+D  LEI     E+     I A ++  
Sbjct: 13  VAKDDLSHAVGWVARNLPTKAAQPVLRAMIFTADDNGLEIAGFDYEVSTRVRIAAEIEEP 72

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G + V+  L+ DIV  + +   +   +E+   T+V I  G S F L +    ++P     
Sbjct: 73  GRVAVAGKLMSDIVSAMPN-RPVEIRQED---TKVLIQCGSSRFELPTISLEDYPQLPVL 128

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             V   ++   +    V +   A   ++    L GI   I  +D+ L   ATD  RLAV 
Sbjct: 129 PEVTG-KINPQLFSEAVSQVAAAAGKDDTLPMLTGISMSIEGKDVHLT--ATDRFRLAVR 185

Query: 185 --EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIES 234
             E +  A+  K   ++VP K + E  R L S  +  +++++       ++    L+ ++
Sbjct: 186 TFEWEPTAEDVKT-QLLVPAKTLQETARTLDSHINDPIEIAVGTGDSIAADGLFGLHADN 244

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + R++D +FP   +++P ++     V    L++A+ RVS+++    Q +++  S  +
Sbjct: 245 RETTTRMLDADFPTVSHLLPKTHTAMASVEIGPLQEAIRRVSLLTDRNAQ-IRMLFSEGE 303

Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DS 352
           + +     D G A E++   +     + I FN  +L + +  I +     D VVF   + 
Sbjct: 304 VQLAAGATDTGNAEETIPCAFTGRDELLIAFNPAFLKDGLAVIPT-----DRVVFGFTEP 358

Query: 353 SNSSVFIRGKDKDSKNNKDNKV---NAF--YVLMPMRI 385
           S  ++ I   ++  + ++D      + F  Y+LMP+R+
Sbjct: 359 SRPAIMIPEPEELPEADEDGNFPTPDTFFTYLLMPVRL 396


>gi|88597670|ref|ZP_01100903.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561695|ref|YP_002343474.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|88189974|gb|EAQ93950.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359401|emb|CAL34183.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315930329|gb|EFV09417.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 355

 Score = 81.3 bits (199), Expect = 2e-13,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     +    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNFLF----VRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + ++L  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMRLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    K+LL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329


>gi|312149228|gb|ADQ29299.1| DNA polymerase III, beta subunit [Borrelia burgdorferi N40]
          Length = 385

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 79/345 (22%), Positives = 161/345 (46%), Gaps = 24/345 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +   
Sbjct: 10  ETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSETDF 69

Query: 66  SITVSAHLLYDIVRKLQDGAQISF-FKEN----ELGTEVNISHGDSNFYLQ--SFPESEF 118
            + ++A   YD V+      +I   F EN    E+  E+N    +   +L+  +F   E 
Sbjct: 70  KVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSYEEI 129

Query: 119 PSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +       E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED  L  V
Sbjct: 130 ENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSTLLLV 188

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           +T+GHR+++ + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++
Sbjct: 189 STNGHRMSICKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDN 245

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +
Sbjct: 246 YKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSE 302

Query: 295 LCMTVDNPDM--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           L + +   D+  G+     I+  N  Y+     +  N  Y +E I
Sbjct: 303 LQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAI 347


>gi|310816477|ref|YP_003964441.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25]
 gi|308755212|gb|ADO43141.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25]
          Length = 377

 Score = 81.3 bits (199), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 101/371 (27%), Positives = 155/371 (41%), Gaps = 60/371 (16%)

Query: 33  VLLQAND--GLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF 90
           V L+A D   LL IK    E E TG +P          VSA +L            ++  
Sbjct: 46  VTLRATDLDNLLTIKL---EAETTGTVP--------FLVSAEVLQKFASLAAGPVTVTRT 94

Query: 91  KENELGTEVNISHGDSNFYL---QSFPESEFPSTKEEEY--VYSFELASSVLKNLVERTH 145
            + E G +  I+  D    L   +     +FP+    +      F  + + L  +++ + 
Sbjct: 95  PDIE-GKDALITITDQETTLRLRERIQHDDFPTVPAWDMKDAARFTGSGAELSRILDLSR 153

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
             ++TEE RYYLNGI+     E   L AVATDGHR+AV + +I A    +  +I PR A+
Sbjct: 154 HCVSTEETRYYLNGIYLITAPERSTLRAVATDGHRMAVIDSNIEA--PNLAGVIFPRFAL 211

Query: 206 GEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
                +L  K ++ +K+   E+R  +  +   +  ++IDG FP+Y  VIP     +   N
Sbjct: 212 DVFRGLLDPKSNTPIKMQFEENRGIIEGDDWILHSKMIDGTFPDYTRVIP-----KHETN 266

Query: 265 C-TNLRQAV----DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
           C  +  +A+     R+S      I A     S  K+ +  +  D     ES++V     P
Sbjct: 267 CEAHFTRAIVTKAHRLSQAVRGHIAAAATITSDGKMHLMHEGED-----ESVSVPVGASP 321

Query: 320 -MDI---CFNYKYLLEIIDNISSDEVVDDEVVFRLDS--SNSSVFIRGKDKDSKNNKDNK 373
             D+    FN KYL       +    V  E   R  +   N    I   D D        
Sbjct: 322 NFDLGRHGFNVKYL-------NKQAQVTPEFTLRASTERPNDPATIVSDDPD-------- 366

Query: 374 VNAFYVLMPMR 384
             A ++LMPMR
Sbjct: 367 --ACWILMPMR 375


>gi|152963974|ref|YP_001359758.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151358491|gb|ABS01494.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 383

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 84/343 (24%), Positives = 159/343 (46%), Gaps = 14/343 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           +++ VER  + + +  A R +  +  +PV   VLL+A D G L++     E+     +PA
Sbjct: 9   VELQVERDVLADAVAWAARALPSRPPVPVLAGVLLEATDEGTLKLSTFDYEVSARVELPA 68

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G + VS  LL DI R L +   ++   E   G++V ++ G S F L +    E+P
Sbjct: 69  DVRTAGRVLVSGRLLADISRSLPN-RPVTLTTE---GSKVVVTCGASRFTLLTMTVEEYP 124

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        S EL  +     V +   A + +E    L G+   I  + L L  +ATD +
Sbjct: 125 ALPTLPD-SSGELPGAEFTEAVAQVTVAASRDETLPILTGVRMEIEGDRLTL--LATDRY 181

Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR---IHLNIESL 235
           RLAV E+        + ++ + R + + ++ R L S  S + +++++ +   I       
Sbjct: 182 RLAVRELRWNPSSPDISAVALVRARTLSDVARSLGSS-SMLTMAMADGKSDLIGFQAGGR 240

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +  L+DGE+P  + + P  +     V+   L +AV RV++++  R   V+L      L
Sbjct: 241 YSTSLLVDGEYPKVRALFPAESPTHAVVSTAALTEAVKRVALVAE-RNTPVRLRFEDGVL 299

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +     +  +A E++        + I FN ++LL+ +  +++
Sbjct: 300 SLEAGQGEDAQATEALEAALVGESIAIAFNPQFLLDGLGALAA 342


>gi|118588967|ref|ZP_01546374.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
 gi|118438296|gb|EAV44930.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
          Length = 398

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 70/236 (29%), Positives = 114/236 (48%), Gaps = 18/236 (7%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYDIVR 79
           I+R++T+P+   VL++  DG   + A+  ++EI   +  +V  C GS  +  + LYD+VR
Sbjct: 21  IQRRSTLPILSAVLIE--DG--AVIATDLDMEIR--VKFAVKKCEGSAVIPFNQLYDLVR 74

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L     +           V ++     ++L S+   ++P     E V        +L  
Sbjct: 75  LLPADRSVRLQDTEYKNGGVFVTFQGGRYFLPSYSVVDYPRFSMPEDVREIASPQGLLVA 134

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L E     M+TEE RYYLNG+ F  +++D  +  VATDGHRL     D        P  I
Sbjct: 135 L-EACQSFMSTEETRYYLNGVCFGRDKDDTGVL-VATDGHRLIAH--DYAHDCDGSP--I 188

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGEFPNYQNVIP 254
           +PR  +  +LR+   +    KV L E ++   +     +  +LIDG FP++Q V+P
Sbjct: 189 LPRAMIVALLRLCEPE----KVLLHEQKMEFVLPGGGYLRCKLIDGTFPDWQRVVP 240


>gi|289427477|ref|ZP_06429190.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165]
 gi|289159407|gb|EFD07598.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165]
 gi|313765025|gb|EFS36389.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA1]
 gi|313771065|gb|EFS37031.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL074PA1]
 gi|313792567|gb|EFS40653.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA1]
 gi|313803568|gb|EFS44750.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA2]
 gi|313806857|gb|EFS45355.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA2]
 gi|313811770|gb|EFS49484.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA1]
 gi|313814220|gb|EFS51934.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA1]
 gi|313815418|gb|EFS53132.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA1]
 gi|313817644|gb|EFS55358.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA2]
 gi|313821531|gb|EFS59245.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA1]
 gi|313824525|gb|EFS62239.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA2]
 gi|313826194|gb|EFS63908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA1]
 gi|313829190|gb|EFS66904.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA2]
 gi|313832304|gb|EFS70018.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL007PA1]
 gi|313832764|gb|EFS70478.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL056PA1]
 gi|313839623|gb|EFS77337.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL086PA1]
 gi|314916214|gb|EFS80045.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA4]
 gi|314917481|gb|EFS81312.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA1]
 gi|314921817|gb|EFS85648.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA3]
 gi|314926332|gb|EFS90163.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA3]
 gi|314930918|gb|EFS94749.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL067PA1]
 gi|314955286|gb|EFS99691.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA1]
 gi|314959159|gb|EFT03261.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA1]
 gi|314961664|gb|EFT05765.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA2]
 gi|314963872|gb|EFT07972.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA1]
 gi|314969082|gb|EFT13180.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA1]
 gi|314975199|gb|EFT19294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA1]
 gi|314977612|gb|EFT21707.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL045PA1]
 gi|314980256|gb|EFT24350.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA2]
 gi|314985202|gb|EFT29294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA1]
 gi|314987111|gb|EFT31203.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA2]
 gi|314990687|gb|EFT34778.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA3]
 gi|315078994|gb|EFT51006.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA2]
 gi|315081496|gb|EFT53472.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL078PA1]
 gi|315083081|gb|EFT55057.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA2]
 gi|315086614|gb|EFT58590.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA3]
 gi|315088016|gb|EFT59992.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA1]
 gi|315097161|gb|EFT69137.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL038PA1]
 gi|315099341|gb|EFT71317.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA2]
 gi|315102318|gb|EFT74294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA1]
 gi|315107497|gb|EFT79473.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA1]
 gi|315109865|gb|EFT81841.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA2]
 gi|327332501|gb|EGE74236.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA2]
 gi|327333674|gb|EGE75391.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA3]
 gi|327444468|gb|EGE91122.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA2]
 gi|327446722|gb|EGE93376.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA2]
 gi|327448836|gb|EGE95490.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA1]
 gi|327454253|gb|EGF00908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA3]
 gi|327456313|gb|EGF02968.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA2]
 gi|327457413|gb|EGF04068.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL092PA1]
 gi|328756011|gb|EGF69627.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA1]
 gi|328757975|gb|EGF71591.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL020PA1]
 gi|328758854|gb|EGF72470.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA2]
 gi|328759812|gb|EGF73403.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL099PA1]
          Length = 414

 Score = 80.9 bits (198), Expect = 3e-13,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 178/403 (44%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 29  VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 88

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           VD  G   VS  LL DI R L +   QI+         ++++  G + F LQ+ P  E+P
Sbjct: 89  VDEPGESLVSGKLLADIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 143

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +
Sbjct: 144 DLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 200

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +
Sbjct: 201 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 259

Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ 
Sbjct: 260 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 318

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEVVD 343
           ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +     
Sbjct: 319 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 373

Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 374 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 412


>gi|219685163|ref|ZP_03539983.1| DNA polymerase III, beta subunit [Borrelia garinii Far04]
 gi|219673259|gb|EED30278.1| DNA polymerase III, beta subunit [Borrelia garinii Far04]
          Length = 386

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 114/216 (52%), Gaps = 13/216 (6%)

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           E+Y +  EL     K ++ R  F+   +E +  LNG+FF    ED KL  V+T+GHR+++
Sbjct: 140 EDYTFEIELKQKSFKKIINRIAFSAHFDESKNVLNGVFF-TKGEDFKLLLVSTNGHRMSI 198

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++  ++  LI+
Sbjct: 199 CKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYVEFDNYKIACSLIN 255

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G +P+Y+++IP   + +  V+ + L+  + RV++      ++ KL L+  +L + +   D
Sbjct: 256 GNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYVD---KSKKLILTFSELQLKLLGED 312

Query: 304 M--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           +  G+     I++ N  Y      +  N  Y +E I
Sbjct: 313 LITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAI 348


>gi|225377586|ref|ZP_03754807.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM
           16841]
 gi|225210562|gb|EEG92916.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM
           16841]
          Length = 382

 Score = 80.9 bits (198), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 74/344 (21%), Positives = 165/344 (47%), Gaps = 11/344 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++L  +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I   
Sbjct: 13  MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A +  +IVRKL D + +    ++   T +       N   +S  + S  P
Sbjct: 73  IAERGIIALDAKIFSEIVRKLPD-SDVVIETDSNFKTTITCEKAKFNIVGKSGDDFSYIP 131

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  E +    ++   LK ++ +T F++A  +    + G  F I E  LK+  V+ DGH
Sbjct: 132 FIERNECI---SISQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENQLKV--VSLDGH 186

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++  +++         ++VP K + E+ +IL  S +  V + LSE+ I    +  ++ 
Sbjct: 187 RISIRNIELKNN-YDHKKVVVPGKTLQEVSKILPGSAEEEVNIFLSENHIVFEFDDTTVV 245

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+   + ++    D ++++N   L   +DR +++      + + ++++   + +
Sbjct: 246 SRLIEGEYFKIEQMLSSDYDTKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMEL 305

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            + N  +G   E +++      + I FN K+ ++ +  I  +EV
Sbjct: 306 KI-NSFIGSMNEDIDITKEGKDILIGFNPKFFIDALRVIDEEEV 348


>gi|118475405|ref|YP_891212.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414631|gb|ABK83051.1| DNA polymerase III, beta subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 356

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 70/308 (22%), Positives = 151/308 (49%), Gaps = 15/308 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+ ++++ +  ++ +    +++K+   ++ H+ L A DG+L IKA+  EI +   +  A
Sbjct: 1   MKVLIKKNVLESIVINTNPYLDKKDLSSITSHIFLSARDGVLNIKATDNEIGLEYKVKNA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G  T +   L DI++ L+DG  +    +N L     I   +S + L      +FP
Sbjct: 61  TIADEGMATANGKKLLDIIKSLKDGDIMLETIQNHLY----IKQNNSKYRLPMQKPEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F++ +  L   +++   ++     +  L G    I ++ + L  V TD  
Sbjct: 117 EFPSLENKKKFDINAGSLSKSLKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+V +++I +Q     SII+P+KA+ EI ++      ++++   E+      ++     
Sbjct: 175 RLSVYQLEINSQNDPF-SIIIPKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFT 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G +P+Y  V+P    + + +N   + + +  +S++S +    VK++++ D +    
Sbjct: 231 KLINGRYPDYTRVVPNEIKQNIILNREKIIEGIKTISMLSEI----VKITIAPDNISFES 286

Query: 300 DNPDMGKA 307
            N D  +A
Sbjct: 287 INDDNSEA 294


>gi|291520348|emb|CBK75569.1| DNA polymerase III, beta subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 301

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 62/280 (22%), Positives = 144/280 (51%), Gaps = 9/280 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++D+++ +    + +  + T+ +   +L+ A+ G +++ A+  EI I   +  +
Sbjct: 1   MKITCQKADLVKGVNIVSKAVPTRTTMAILECILIDASAGEIKLTANDMEIGIETIVNGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A    +IVRKL D  +++   ++   T +       +   +S  + S  P
Sbjct: 61  ILERGIIALDAKKFSEIVRKLPDN-EVTIETDSTYKTSITCEKAKFDIIGKSGEDFSYLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  + +   +L    L++++ +T F++A  E    + G    I  +D KL  VA DGH
Sbjct: 120 NIQRNQPIVISQLT---LRDIIRQTIFSVADNENNKMMTGELIEI--KDNKLKVVALDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           R+++  V++    A+   ++VP+K + EI++I+    D  V + ++++ I    +  ++ 
Sbjct: 175 RVSIRNVEL-KNPAEDVKVVVPKKTLNEIIKIVDGGIDDEVNIFVTDNHIIFEFDQTTVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
            R+I+GE+   + ++    + ++++N       +DR +I+
Sbjct: 234 SRIIEGEYFKIEQMLSADYETKIKINKREFFDCIDRATIL 273


>gi|111115265|ref|YP_709883.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo]
 gi|216263342|ref|ZP_03435337.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1]
 gi|110890539|gb|ABH01707.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo]
 gi|215980186|gb|EEC21007.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1]
          Length = 386

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 77/335 (22%), Positives = 157/335 (46%), Gaps = 25/335 (7%)

Query: 17  ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76
           A  II  +N   +   +L++  +  L IK++   I     IP   +    + ++A   YD
Sbjct: 21  AKGIILNRNMNDIWSALLIEVKNSNLIIKSTDRNIFFESTIPIVSETDFKVLINASNFYD 80

Query: 77  IVRKLQDGAQISF-FKENE-----LGTEVNISHGDSNFYLQ--SFPESEFPSTK----EE 124
            V+      +I   F EN      +G   +    +   +L+  +F   E  +       E
Sbjct: 81  AVKAFSFYKKIKIAFNENNSKLEIMGESKDEKEEEYEDHLKEPTFSYEEIENYNYDMVNE 140

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V+T+GHR+++ 
Sbjct: 141 DYTFEIEIKQKSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDSKLLFVSTNGHRMSIC 199

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           + ++  +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++  ++  LI G
Sbjct: 200 KTEVTVE--EDVNFIVPVK-IFNFLKHLMSGEGLVKIKSSDKKFYVEFDNYKIACSLISG 256

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
            +P+Y+++IP     +  V+ + L+  + RV++      ++ KL L+  +L + +   D+
Sbjct: 257 NYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVD---KSRKLVLTFSELQLKLLGEDL 313

Query: 305 --GKA----IESMNVYYNECPMDICFNYKYLLEII 333
             G+     I++ N  Y+     +  N  Y +E I
Sbjct: 314 ITGRKGEFFIKNSNYLYDGSDEVMAINISYFIEAI 348


>gi|154148349|ref|YP_001405625.1| DNA polymerase III subunit beta [Campylobacter hominis ATCC
           BAA-381]
 gi|153804358|gb|ABS51365.1| DNA polymerase III, beta subunit [Campylobacter hominis ATCC
           BAA-381]
          Length = 356

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/364 (23%), Positives = 175/364 (48%), Gaps = 39/364 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V++  +  ++ +    +E+K+   ++ H+L+ A DG+L IKA+  EI ++     +
Sbjct: 1   MKVIVKKGVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYK-NRN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           V V   G  T +   L + ++ L+D  +I+       G  + +    S + L  +  ++F
Sbjct: 60  VTVIDEGYATANGSKLMNAIKGLEDD-EITL---ETAGNSLFVKQKRSKYKLPMYNYTDF 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E    FE+ S +L   +++   ++ T   +Y LNG    I E+ + L  V+TD 
Sbjct: 116 PEFPTIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINL--VSTDT 173

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-----DSSVKVSLSESRIHLNIE 233
            RL++  +      A    II+P+KA+ EI ++ S K     D++V +++SES      E
Sbjct: 174 KRLSLYTIPNQTSTAN-EKIIIPKKAINEIQKLFSDKVEIFYDANVFLAVSES-----FE 227

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             S   +LI+G+FP Y  ++     + + +    + + +  ++ M      ++K+++ ++
Sbjct: 228 FFS---KLINGKFPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMC----DSMKITIKNN 280

Query: 294 KL---CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            +    ++ DN +    IE+     N+    I    K+L++ + NI       +E  F+ 
Sbjct: 281 SILFESISEDNSEAKTEIETSIQIENQIEFSI--RNKFLMDFLSNI-------EENSFKF 331

Query: 351 DSSN 354
           D +N
Sbjct: 332 DFNN 335


>gi|313667262|ref|YP_004049663.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM
           14977]
 gi|313153893|gb|ADR37743.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM
           14977]
          Length = 406

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 86/410 (20%), Positives = 163/410 (39%), Gaps = 55/410 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           + ITVE   +   L    R++  +++ P    V L   +G L +  +    ++   +PA 
Sbjct: 27  VTITVETKALKGALDRLARVLPARSSEPAYLSVALTPAEGALVLAGTNGAQDLELVLPAE 86

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--------LGTEVNISHGDSNFYLQS 112
                +  V A  L  +VR L  G  ++   E E          T +++S GD    L  
Sbjct: 87  APPGPTRLVPAAPLTQVVRSLGAG-TVTLTLEGETLTLEAGRFATRLHLSAGDLELPLDF 145

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             +        E       +A            +A + E  R    G+   ++ E L+  
Sbjct: 146 GGDPLASLPAAELAALLEPVA------------YATSNENYRAVFTGVQLEVHPERLR-- 191

Query: 173 AVATDGHRLAV-----AEVDIVAQIAKMP-----------SIIVPRKAVGEILRILSSKD 216
            VA+DG RLA+      E   V +   +P           +++VP+ +V E+LR+L   +
Sbjct: 192 GVASDGFRLALVDRPLPEGAAVHRTFPVPEDGDGAAPEPLALVVPKASVVELLRVLRGVE 251

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             V++     R+ L+ E +  +  L+DG +P Y  VIP         +    R+A+ R +
Sbjct: 252 GVVQLHHRPGRLALHAEGVRYATALLDGTYPEYARVIPAEAPFVAEFDVRPFREALRRTT 311

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDN 335
           +MS      V L+    ++ +  +  D G+  E +  + Y   P+    N  YL + +  
Sbjct: 312 VMSDATNHRVDLTFEEGRVRLVSEG-DYGRGEEVLEGIDYQGEPLTTALNASYLEDALGP 370

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++           RLD +  +  +  +D ++ +          V++P+R+
Sbjct: 371 VARRA--------RLDLTGPTTPLAVRDAEALDGY------LAVVVPLRV 406


>gi|331086958|ref|ZP_08336034.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409619|gb|EGG89058.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 369

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 189/386 (48%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A    +++ A+  E+ I   I  +
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A +  +IVRKL D   I     N L T +       N   +S  + S  P
Sbjct: 61  ILQKGIIALDAKIFSEIVRKLPDNEVIIETNSN-LQTLITCEKAKFNISGKSGEDFSYLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++++ +    L+   LK ++ +T F+++  +    ++G  F +++  LK+  V+ DGH
Sbjct: 120 YIEKKDCI---TLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           R+++ ++++  +  +   ++VP K + EI +ILS + +S V +  + + I     +  + 
Sbjct: 175 RISIRKIEL-KESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+     ++    + ++R+N   L   +DR +++      + + ++++ + + +
Sbjct: 234 SRLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            + +  +G   E + +  +   + I FN K+L++ +  I      D+EV     ++ +  
Sbjct: 294 KIQS-QIGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FI          KD + +  Y+++P+
Sbjct: 348 FI----------KDEEQSYIYLILPV 363


>gi|288916501|ref|ZP_06410878.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
 gi|288352101|gb|EFC86301.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
          Length = 414

 Score = 80.5 bits (197), Expect = 4e-13,   Method: Compositional matrix adjust.
 Identities = 81/348 (23%), Positives = 155/348 (44%), Gaps = 20/348 (5%)

Query: 42  LEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI 101
           LEI A   E+     + A V   G + V   LL D+VR L D   + +       T V I
Sbjct: 78  LEISAFDGEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVLVW----ATATRVTI 133

Query: 102 SHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161
             G ++F + +  +SE             E+ +      V +   A   ++    L  + 
Sbjct: 134 ECGTASFRIPTL-DSEDYPVLPVFPPPVGEVDTLGFAAAVAQVAPAAGRDDSLPVLTAVR 192

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII-VPRKAVGEILRILSSKDS-SV 219
             I    L L  VATD +RLA+  +     +    ++  VP + + +I R+ +S    ++
Sbjct: 193 LEIARGGLSL--VATDRYRLALRTIPWQPTVDDPEAVAHVPARLLADIARLPTSASRIAL 250

Query: 220 KVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            + + +S   R  L++      VRL++G FPNY+ ++P ++   +    + L  AV RV+
Sbjct: 251 GMGVDDSGVARFGLSVNGRQTIVRLLEGTFPNYRRLLPEASAFTVTAQTSVLAAAVRRVA 310

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
           ++++ R   ++ + S+ ++     +    +A E + + Y    + + FN  +LL+ +  +
Sbjct: 311 LVAT-RTAPLRFTFSAGQVLAEAGDGGGAQACELVPLEYTGPELSVLFNPAFLLDGLAAV 369

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             DEVV        ++++SS  +          KD+  +  Y+LMP+R
Sbjct: 370 EGDEVVFGFAAVDPNTTSSSPAV-------LTGKDDGEDYRYLLMPIR 410


>gi|325663384|ref|ZP_08151834.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470838|gb|EGC74068.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 369

 Score = 80.5 bits (197), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 82/386 (21%), Positives = 189/386 (48%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A    +++ A+  E+ I   I  +
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G I + A +  +IVRKL D   I     N L T +       N   +S  + S  P
Sbjct: 61  ILQKGIIALDAKIFSEIVRKLPDNEVIIETNSN-LQTLITCEKAKFNISGKSGEDFSYLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++++ +    L+   LK ++ +T F+++  +    ++G  F +++  LK+  V+ DGH
Sbjct: 120 YIEKKDCI---TLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           R+++ ++++  +  +   ++VP K + EI +ILS + +S V +  + + I     +  + 
Sbjct: 175 RISIRKIEL-KESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+GE+     ++    + ++R+N   L   +DR +++      + + ++++ + + +
Sbjct: 234 SRLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            + +  +G   E + +  +   + I FN K+L++ +  I      D+EV     ++ +  
Sbjct: 294 KIQS-QIGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FI          KD + +  Y+++P+
Sbjct: 348 FI----------KDEEQSYIYLILPV 363


>gi|323699690|ref|ZP_08111602.1| DNA polymerase III, beta subunit [Desulfovibrio sp. ND132]
 gi|323459622|gb|EGB15487.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans
           ND132]
          Length = 389

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 180/405 (44%), Gaps = 47/405 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R +I+E L  +  II  K        + LQ  +G L I ++   +E  G+ PA+
Sbjct: 1   MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           ++  G   V     YD+V++L+          +E    V +      +        + Q 
Sbjct: 61  LEGEGLAGVQGRAFYDLVKQLRSDQGELTIHTDEANQNVLVEQKARKYKFPVNDPEWFQK 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF----HINEED 168
           F  S FP   E+  VY    +   L  ++++  F ++ E+    +  I+         + 
Sbjct: 121 F--STFP---EDNTVY---WSGDFLHEIIDKISFCISDEDSMEAIACIYMVPRDKAGNKT 172

Query: 169 LKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225
           +++C +  +GH+ A+      DI A + +   +++ +K + E+ + L++ +  +++++S 
Sbjct: 173 VEVCGL--NGHQFAMLNFVNDDIYAMLPE-EGVLIQKKYLAELKKWLTADE--IELAISN 227

Query: 226 SRIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSS 280
            R+      +  + ++ L   ++PNY N +   ND     L VN  +L  A+ RV++ ++
Sbjct: 228 KRLFFRTGDKRETFTLPLSYYQYPNYNNFLARLNDDNVSTLEVNRLDLVDALSRVALFNT 287

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              +    S   +++ ++    + G A ES++  +      I F  + L+EI+++ +S  
Sbjct: 288 DSNRCAYFSFDDNEVTVSAQGQETGTARESIDATFTGDMTRIAFPTRNLIEILNHFAS-- 345

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                V F L  + +   + G D     +KD  V    ++MPM I
Sbjct: 346 ---PTVKFTLTGTEAPCGLTGPD-----DKDYNV----IVMPMMI 378


>gi|317180278|dbj|BAJ58064.1| DNA polymerase III subunit beta [Helicobacter pylori F32]
          Length = 374

 Score = 80.1 bits (196), Expect = 5e-13,   Method: Compositional matrix adjust.
 Identities = 89/395 (22%), Positives = 181/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++D  L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKDQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + +      + V + 
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLKC 341

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +S   I+    + +N+ + K++   ++MP+ +
Sbjct: 342 NEPSSPFLIQEPLDEKQNHLNAKIST--LMMPITL 374


>gi|291526545|emb|CBK92132.1| DNA polymerase III, beta subunit [Eubacterium rectale DSM 17629]
          Length = 370

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 138/280 (49%), Gaps = 9/280 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   ++++L+ +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I  +
Sbjct: 1   MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           ++  G I + A +  +IVRKL D   ++   +    T ++      N   +S  + S  P
Sbjct: 61  IEERGIIALDAKIFSEIVRKLPDN-DVTIETDASFKTVISCEKAKFNIIGKSGDDFSYLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  E   S  L+   LK ++ +T F++A  +    + G  F I E   KL  V+ DGH
Sbjct: 120 YVERNE---SIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++  +++         ++VP K + EI +I+  S D  V + ++ + I    E+ ++ 
Sbjct: 175 RISIRYIEMKNHYDS-KKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
            RLI+GE+     ++    D ++R+N   L + +DR +++
Sbjct: 234 SRLIEGEYFKIDQMLSSDYDTKVRINKRELLECIDRATLL 273


>gi|256823907|ref|YP_003147867.1| DNA polymerase III subunit beta [Kytococcus sedentarius DSM 20547]
 gi|256687300|gb|ACV05102.1| DNA polymerase III, beta subunit [Kytococcus sedentarius DSM 20547]
          Length = 378

 Score = 80.1 bits (196), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 85/397 (21%), Positives = 170/397 (42%), Gaps = 34/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+  V+R  + E +    R +  +  +PV   V L A+  G L + A   + E++G +  
Sbjct: 1   MEFQVQRDVLSEAVAWVVRGLTNRPPVPVLAGVRLVADPAGTLTLSAF--DYEVSGEVTV 58

Query: 60  SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             DV   G   V   LL +I R L D       +  + G ++ ++ G S F L   P ++
Sbjct: 59  EADVVTGGEALVLGRLLSEISRSLPD----KPVRIQQDGGKLQVTCGSSRFALLEMPLAD 114

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS        S  +  ++    V +   A    +    L G+  H+  +  ++  +ATD
Sbjct: 115 YPSLPTSPEA-SGTVDGALFTKAVAQVSVAADRSDALPILTGV--HVEFDGERITMLATD 171

Query: 178 GHRLAVAEVDIVAQIAKMPSI----IVPRKAVGEILRILSSKDSSVKVSLSE-----SRI 228
            +R+A  E+       + PS     +VP + + +  + L +   SV ++L +       I
Sbjct: 172 RYRMARREL---TWTPRDPSAHHVALVPSRTLSDTAKSLGAV-GSVDIALGDEAGGKGLI 227

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                    + RL+DGE+P   ++ P ++D +  +  + L +A+ RVS+++  R   V+L
Sbjct: 228 GFAAGQRHSTTRLLDGEYPKVSSIFPTTSDVDAVMETSALVEAIKRVSLVAE-RTTPVRL 286

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             +   + +     D  +A E++    +   +D+ FN  +LL+ +  + +          
Sbjct: 287 RFTPGSVAIEAGTGDDAQASEAVECTLDGDEIDVAFNPGFLLDGLGALGT-----PFARM 341

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     + G+  ++    D+  +  YV+MP+R 
Sbjct: 342 SFTQPGKPALLTGQ-AEADGEADDAFS--YVIMPVRF 375


>gi|314922679|gb|EFS86510.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL001PA1]
 gi|314965764|gb|EFT09863.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA2]
 gi|314982905|gb|EFT26997.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA3]
 gi|315091211|gb|EFT63187.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA4]
 gi|315094445|gb|EFT66421.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL060PA1]
 gi|315105165|gb|EFT77141.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA2]
 gi|327328940|gb|EGE70700.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL103PA1]
          Length = 414

 Score = 79.7 bits (195), Expect = 6e-13,   Method: Compositional matrix adjust.
 Identities = 96/403 (23%), Positives = 177/403 (43%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 29  VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 88

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           VD  G   VS  LL DI R L +   QI+         ++++  G + F LQ+ P  E+P
Sbjct: 89  VDEPGESLVSGKLLADIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 143

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +
Sbjct: 144 DLPHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 200

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +
Sbjct: 201 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 259

Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ 
Sbjct: 260 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 318

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEVVD 343
           ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +     
Sbjct: 319 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 373

Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 374 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 412


>gi|65319987|ref|ZP_00392946.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bacillus anthracis str. A2012]
          Length = 236

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 59/205 (28%), Positives = 105/205 (51%), Gaps = 8/205 (3%)

Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVP 201
           ++T FA+A  E R+ L G+  HI  +  KL   ATD HRLA+ E  I   +    + IVP
Sbjct: 6   KQTVFAVAKNESRHVLTGV--HIELDHNKLICAATDSHRLAIRETLISTNMK--ANCIVP 61

Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261
              + E+L++++S    V + LSES I     + ++  RLI+G++PN   +IP      +
Sbjct: 62  SATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIEGKYPNISTLIPNEFQTVI 121

Query: 262 RVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNP-DMGKAIE--SMNVYYNE 317
            ++   + Q VDR S+++S      V L + ++       N   +GK  E   ++V   +
Sbjct: 122 NIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQISSNASQIGKISEKQQIDVIQGK 181

Query: 318 CPMDICFNYKYLLEIIDNISSDEVV 342
             ++I F+ +++L+ +  I  + V 
Sbjct: 182 KQLNISFDGRFMLDALRAIKEETVT 206


>gi|308063701|gb|ADO05588.1| DNA polymerase III subunit beta [Helicobacter pylori Sat464]
          Length = 374

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D + I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSSIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|50839100|gb|AAT81767.1| DNA polymerase III, beta chain [Propionibacterium acnes KPA171202]
 gi|332674400|gb|AEE71216.1| DNA polymerase III subunit beta [Propionibacterium acnes 266]
          Length = 503

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 178/403 (44%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 118 VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 177

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           VD  G   VS  LL DI R L +   QI+         ++++  G + F LQ+ P  E+P
Sbjct: 178 VDEPGESLVSGKLLADIARSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 232

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +
Sbjct: 233 DLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 289

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +
Sbjct: 290 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 348

Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ 
Sbjct: 349 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 407

Query: 290 LSSDKLCMTVDNPDMGKAIESMNV----YYNECP--MDICFNYKYLLEIIDNISSDEVVD 343
           ++ D + ++    D  +A E++      + +  P      FN  YL + +  + +     
Sbjct: 408 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 462

Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 463 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 501


>gi|283953663|ref|ZP_06371194.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794704|gb|EFC33442.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           414]
          Length = 355

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 77/346 (22%), Positives = 168/346 (48%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   I    +N L     I    + + L  F   +FP
Sbjct: 61  RVESNGFATANARSIADVIKSLNNEEVILETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNIEGKNHFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  +  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKTNN--QEFNFSIPKKAIIEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++++++    + +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKINVVT----EKMKLHFNKDKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E +    NE   ++    KYLL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELE-IQTGVNE-EFNLTIKIKYLLDFLTSIEEEKFT 329


>gi|261884881|ref|ZP_06008920.1| DNA polymerase III subunit beta [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 304

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 71/298 (23%), Positives = 144/298 (48%), Gaps = 16/298 (5%)

Query: 22  ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRK 80
           ++K+   +S H+ L A DG+L IKA+  EI +   +  A++   G  T +   L DI++ 
Sbjct: 22  DKKDLSSISSHIFLSARDGVLNIKAADNEIGLEYKVKNATIADEGMATANGKKLLDIIKS 81

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNL 140
           L+DG  +    +N L     I   +S + L      +FP     E    F++ +  L   
Sbjct: 82  LKDGDIMLETIQNHLY----IKQNNSKYRLPMQKPEDFPEFPSLENKKKFDINAGSLSKS 137

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200
           +++   ++     +  L G    I ++ + L  V TD  RL+V +++I +Q     SII+
Sbjct: 138 LKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTKRLSVYQLEINSQNDPF-SIII 194

Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
           P+KA+ EI ++      ++++   E+      ++     +LI+G +P+Y  V+P    + 
Sbjct: 195 PKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFTKLINGRYPDYTRVVPNEIKQN 251

Query: 261 LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318
           + +N   + + +  +S++S +    VK++++ D +     N D  +A   + + + EC
Sbjct: 252 IILNREKIIEGIKTISMLSEI----VKITIAPDNISFERINDDYSEAKTIIRI-FKEC 304


>gi|218778134|ref|YP_002429452.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759518|gb|ACL01984.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 370

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 60/235 (25%), Positives = 115/235 (48%), Gaps = 13/235 (5%)

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           PE +FP   E +    F++    L+ L+ +T  +    E     + +  H+  +   L  
Sbjct: 112 PE-DFPEIPEPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGAHLARDGEHLVI 170

Query: 174 VATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             TDG +LA     I  Q A++P   II+ +    +++    +K++   V+L  +  HL+
Sbjct: 171 TTTDGCQLARGSFPI--QDARLPEKGIILHKTGAAKLMEF--AKNAPGDVALGVTSSHLS 226

Query: 232 IESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
            ES +  +  RL+ G++P+   +IP   D    +N      A+ RV I++S + QA  L+
Sbjct: 227 AESQNERLISRLVQGDYPDTARIIPVL-DTGFAINRFEFLAALKRVGILTSEKYQAASLA 285

Query: 290 LSSDKLCMTVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           L   ++ +TVDNP++G + E+++     ++  P   C+N   L   +  ++S+ V
Sbjct: 286 LEHSRITVTVDNPELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTSENV 340


>gi|153952198|ref|YP_001397275.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939644|gb|ABS44385.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 355

 Score = 79.7 bits (195), Expect = 7e-13,   Method: Compositional matrix adjust.
 Identities = 75/346 (21%), Positives = 166/346 (47%), Gaps = 21/346 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N L     I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSITDVIKNLNNEEIVLETIDNFLF----IRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    E+     
Sbjct: 175 RLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--- 296
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + +K+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNKNKIIFEG 285

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++DN +    +E       E   ++    K+LL+ + +I  ++  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEE--FNLTIKIKHLLDFLTSIEEEKFT 329


>gi|224534779|ref|ZP_03675351.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S]
 gi|224514027|gb|EEF84349.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S]
          Length = 385

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 74/332 (22%), Positives = 153/332 (46%), Gaps = 20/332 (6%)

Query: 17  ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYD 76
           A  II  +N   +   +L++     L I+++   I     IP   +    + ++A   YD
Sbjct: 21  AKGIILNRNMNDIWSALLIEVEKSNLIIRSTDRNIFFESLIPIVSETDFKVLINASNFYD 80

Query: 77  IVRKLQDGAQISF-FKENELGTEV-NISHGDSNFYLQSFPESEFPSTK---------EEE 125
            V+      +I   F EN    E+   S  +   Y     E  F   +          E+
Sbjct: 81  AVKAFSFCKKIKVVFNENNSKLEIMEESKNEKEEYEDHLKEPTFSYEEIENYNYDMVNED 140

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
           Y +  E+  +  K ++ R  F+   +E +  LNG++F   +ED +L  V+T+GHR+++  
Sbjct: 141 YTFEIEVKQTSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDSQLLLVSTNGHRMSICR 199

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
            +++ +  +  + IVP K +   L+ L S +  VK+  S  + ++  ++  ++  LI+G 
Sbjct: 200 TEVMVE--ENVNFIVPVK-IFNFLKHLMSGEGMVKIKSSNKKFYVEFDNYKIACSLINGN 256

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           +P+Y+++IP     +  V+ + L+  + RV++    + + + L+ S  +L +  ++   G
Sbjct: 257 YPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVD-KSRKLVLNFSESQLKLLGEDLITG 315

Query: 306 KA----IESMNVYYNECPMDICFNYKYLLEII 333
           +     I++ N  Y+     +  N  Y +E I
Sbjct: 316 RKGEFFIKNPNYLYDGSDEVMAINISYFIEAI 347


>gi|313835168|gb|EFS72882.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA2]
 gi|314929144|gb|EFS92975.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL044PA1]
 gi|314970907|gb|EFT15005.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA3]
          Length = 410

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 95/405 (23%), Positives = 178/405 (43%), Gaps = 41/405 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I +ER  + E +  A R +  + T+P+   + ++A D  + + AS  E      + A 
Sbjct: 25  VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQ 84

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
           VD  G   VS  LL DI R L +       K   + T+   +++  G + F LQ+ P  E
Sbjct: 85  VDEPGEALVSGKLLADIARSLPN-------KPVRITTDPAKMDLVCGSARFTLQALPVDE 137

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P   +     +  + +S+    V +   A   +E+     G+   IN E L L  +ATD
Sbjct: 138 YPDLPQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATD 194

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN 231
            +R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +   
Sbjct: 195 RYRMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFE 253

Query: 232 IESLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +  +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   ++
Sbjct: 254 GDGANGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLR 312

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEV 341
           + ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +   
Sbjct: 313 MVINDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT--- 369

Query: 342 VDDEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
               V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 370 --PYVHFSFTAPGKPCLVTGLNDLDGKPETDYR----HVIMLMRL 408


>gi|317155006|ref|YP_004123054.1| DNA polymerase III subunit beta [Desulfovibrio aespoeensis Aspo-2]
 gi|316945257|gb|ADU64308.1| DNA polymerase III, beta subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 389

 Score = 79.7 bits (195), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 87/405 (21%), Positives = 180/405 (44%), Gaps = 47/405 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R +I+E L  +  II  K        + LQ  +G L I ++   +E  G+ PAS
Sbjct: 1   MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           ++  G   V     YD+V++L++       + +E    V +      +        + Q 
Sbjct: 61  IEEDGLAGVQGRAFYDLVKQLRNDQGELTLRTDEAKQNVLVEQKAKKYKFPVNDPEWFQK 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE----ED 168
           F  S FP   E   V+    +   L  ++++  F ++ E+    +  I+F   E    + 
Sbjct: 121 F--SSFP---ENGTVF---WSGDFLHEIIDKIAFCISDEDSMEAIACIYFVPRESMGVKR 172

Query: 169 LKLCAVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225
           +++C +  +GH+ A+      DI A + +   +++ +K +GE+ + L+S +  +++++S 
Sbjct: 173 VEVCGL--NGHQFAMFNFVNDDIYAMLPE-EGVLIQKKYIGELKKWLTSDE--IELAISH 227

Query: 226 SRIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSS 280
            R+      +  + ++ L   ++PNY N +    D     L V    L  A+ RV++ ++
Sbjct: 228 KRLFFRTGDQRETFTLPLSYYQYPNYNNFLAKLGDDNVSTLEVKRLELVDALSRVALFNT 287

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              +    +    ++ ++    + G A ES++  +      I F  + L+EI+++ +S  
Sbjct: 288 DSNRCAYFTFGEGEVTISAQGQETGTARESIDATFAGDMKRIAFPTRNLIEILNHFNS-- 345

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                V F L  + +   + G D     ++D  V    ++MPM I
Sbjct: 346 ---PTVKFTLTGTEAPCGLTGVD-----DRDYNV----IVMPMMI 378


>gi|225386352|ref|ZP_03756116.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme
           DSM 15981]
 gi|225047534|gb|EEG57780.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme
           DSM 15981]
          Length = 373

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 81/390 (20%), Positives = 183/390 (46%), Gaps = 31/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  ++  +    + +  K T+ +   +L+ A+   +++  +  E+ I   +   
Sbjct: 1   MKLRFQKDALVNGINIVLKAVPSKTTMSILECILIDASGSEIKLTGNDMELGIETTVAGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF-- 118
           +   G I + A L  +I R++   +      E++      I   +S F +Q     EF  
Sbjct: 61  ILEHGKIALDAKLFSEITRRVSSESSAVVSIESDERFNTTIRCENSVFNIQGRDGEEFAY 120

Query: 119 -PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P  + ++Y+    L+   LK ++++T F+++  +    ++G  F +NE  L++  V+ D
Sbjct: 121 LPYIERDKYIC---LSQFTLKEVIQQTIFSISPNDSNKMMSGELFEVNENQLQV--VSLD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLS 236
           GHR+++ +V +      +  +IVP K +GE+ +IL+   +  V +  S + I    +S  
Sbjct: 176 GHRISIRKVRLKDHYDDI-KVIVPGKTLGEVSKILNGDNEKEVLIYFSANHILFEFDSTI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSLSSD 293
           +  RLI+GE+     ++    + ++ VN       ++R +I+  +R    K   ++++ +
Sbjct: 235 VVSRLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATIL--IRENDKKPLIINITDN 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + + + N   G     + ++ N   + I FN K+L++ +  I      D+E+   + + 
Sbjct: 293 SMQLKL-NSSFGSMNADLLIHKNGKDIMIGFNPKFLIDALRAID-----DEEINLYMMNP 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S  FI          KD++ N  Y+++P+
Sbjct: 347 KSPCFI----------KDDEENYIYLILPV 366


>gi|271970493|ref|YP_003344689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513668|gb|ACZ91946.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 365

 Score = 79.3 bits (194), Expect = 8e-13,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 154/344 (44%), Gaps = 16/344 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  + + +    R +  +  +PV   +LL+A D L+ + A   ++    +I A 
Sbjct: 1   MKFQVNRDVLADAVAWVARALPNRPALPVLSGLLLEAGDDLV-LSAFDYDVSARASIEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +   +L +I R L     +        G+E  ++ G + F L + P  +FP+
Sbjct: 60  VAEPGRVLIPGRILAEITRSLP-AEPVEIVTS---GSEAVLTCGSAEFGLLTMPVEDFPT 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   V  + V +   A + +E    L GI   I+ E + + A  TD +R
Sbjct: 116 LPSMPPKIG-AVGGGVFASAVGQVAPAASRDESLPMLTGIRIDISGETVAMAA--TDRYR 172

Query: 181 LAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A  E     +      + +VP + + E+ R L  +   V ++L +          S +V
Sbjct: 173 IAAREFGWRPEEPGAAAAAMVPARVLVEVARSL--RGGEVSMALGDGVAGFESVGRSTTV 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVN--CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           RL+D +F +Y++ +  S+D  +R +        A+ RV++++  R  A++LS S  ++ +
Sbjct: 231 RLLDEQFIDYRSRL--SDDWSIRADLRVAPFIDAIKRVALVAE-RNTAIRLSFSQGQVLI 287

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                D+G+  E M    +   + I F  ++LL+ +  + ++ V
Sbjct: 288 QAGGGDIGRGTEVMEAELSGDGIQIAFQSQFLLDGLAGVETEFV 331


>gi|146319851|ref|YP_001199562.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33]
 gi|145690657|gb|ABP91162.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33]
          Length = 310

 Score = 79.3 bits (194), Expect = 9e-13,   Method: Compositional matrix adjust.
 Identities = 67/286 (23%), Positives = 130/286 (45%), Gaps = 12/286 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I   
Sbjct: 2   IQFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQ 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A    ++V  + D   +  F E E   ++ ++ G S   L+  
Sbjct: 62  DENAGLLISSPGSILLEAGFFINVVSSMPD--LVLDFNEIE-QKQIVLTSGKSEITLKGK 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P  +E        L + VLK  +  T FA +T+E R  L G+ F + E    L  
Sbjct: 119 EAEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENK-NLQT 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HR++  ++ ++       ++++P +++ E     +    +V+V  S ++I    E
Sbjct: 178 VATDSHRMSQRKL-VLDTSGDDFNVVIPSRSLREFTADFTDDIETVEVFFSNNQILFRSE 236

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            +S   RL++G +P+   +IP   +     +  NLR +++R  ++S
Sbjct: 237 HISFYTRLLEGTYPDTDRLIPTEFNTTAIFDTANLRHSMERARLVS 282


>gi|188527661|ref|YP_001910348.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470]
 gi|188143901|gb|ACD48318.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470]
          Length = 374

 Score = 79.3 bits (194), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 161/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+ +H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENEMH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|332668534|ref|YP_004451541.1| DNA polymerase III subunit beta [Cellulomonas fimi ATCC 484]
 gi|332337571|gb|AEE44154.1| DNA polymerase III, beta subunit [Cellulomonas fimi ATCC 484]
          Length = 376

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 87/393 (22%), Positives = 174/393 (44%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+  V+R  + + +    R +  +  +PV   V ++A+  G +++ +   E+     IPA
Sbjct: 1   MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADSTGTIQLSSFDYEVSARSQIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116
            V   G++ VS  LL +I R L D       K  ++   GT+V ++ G S F L + P  
Sbjct: 61  DVAEPGTVLVSGRLLAEISRALPD-------KPVDVVLDGTKVVVTCGASRFTLLTMPVE 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++PS           +    L + V +   A + ++    L G+   I  E  K+  +AT
Sbjct: 114 DYPSLPVMPATAG-TVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGE--KVTLLAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR----IHLN 231
           D +RLA+ E+        + ++ + R + + +  + L S   SV V+LS       I   
Sbjct: 171 DRYRLALRELTWKPSAPDISTVALVRARTLSDAAKSLGSA-GSVTVALSTGAGVDLIGFE 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 +  L+DG++P  + + P        V+   L +A  RV++++  R   ++L+ +
Sbjct: 230 AGGRQTTSLLVDGDYPAVRRLFPDETPIHAIVSTHALAEAAKRVALVAE-RNTPIRLAFT 288

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++ +     D  +A E++        + + FN ++LL+ +  +       D    RL 
Sbjct: 289 QGQVVLDAGQGDDAQASEALEATLVGDDITVAFNPQFLLDGLGAL-------DTTFVRLS 341

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            ++ +  +    ++S    D+K    Y+L+P+R
Sbjct: 342 FTHPNKPVEFTGQESLEG-DDKQEYRYLLVPIR 373


>gi|315650191|ref|ZP_07903266.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum
           DSM 3986]
 gi|315487548|gb|EFU77856.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum
           DSM 3986]
          Length = 383

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 188/394 (47%), Gaps = 40/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +  +++ ++  L    + +  K    +   +L+ A D  + + A+  E+ I   + A 
Sbjct: 15  MNLKFQKTQLVNALSIVMKAVSTKTASVILESILINATDNRVVLDATDNELSIQTEVDAI 74

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEF- 118
           +   G + ++A L  +IVRK +D  + I    + +  T V      + F +      EF 
Sbjct: 75  IVEEGGVVLNAKLFSEIVRKFEDNESLIELDVDKDFKTTVKCEQ--AVFNIMGIDPVEFI 132

Query: 119 --PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             P+ K ++   S +++   LK ++ +T F+ A  +I   + G    + +   K   V  
Sbjct: 133 PMPNIKRDD---SIKMSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNVAKF--VTL 187

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--- 233
           DGHR+++  ++++ +       +VP K++ EI+RI+ S D+   V++  S+ H+  E   
Sbjct: 188 DGHRMSIRNINLIGEYED-HRCVVPVKSLQEIMRIIGS-DTQKNVNIYFSKDHILFEFDR 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSL 290
           +L +S R++DGEF   ++++    D ++ V+    + A+++  I+  +R    K   L +
Sbjct: 246 TLVLS-RILDGEFFRIESMLSRDYDTKVTVSRLKFQSAIEQSMIL--IRENEHKPMILDI 302

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FR 349
            +  L ++V N  +G     +N+  +   + I FN K++++ +      +V+DD+ V   
Sbjct: 303 ENGMLKISV-NSSLGFMDTKVNIEKSGSDLKIAFNPKFVVDAL------KVIDDDFVDIY 355

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             ++ S  FIR          DN+    Y+++P+
Sbjct: 356 FTNAKSPCFIR----------DNENTYTYLILPV 379


>gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656]
 gi|238874106|gb|ACR73813.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656]
 gi|291529188|emb|CBK94774.1| DNA polymerase III, beta subunit [Eubacterium rectale M104/1]
          Length = 370

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 65/280 (23%), Positives = 137/280 (48%), Gaps = 9/280 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   ++++L+ +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I  +
Sbjct: 1   MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           ++  G I + A +  +IVRKL D   ++   +    T ++      N   +S  + S  P
Sbjct: 61  IEERGIIALDAKIFSEIVRKLPDN-DVTIETDASFKTVISCEKAKFNIIGKSGDDFSYIP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +  E   S  L+   LK ++ +T F++A  +    + G  F I E   KL  V+ DGH
Sbjct: 120 YVERNE---SIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++  +++         ++VP K + EI +I+  S D  V + ++ + I    E+ ++ 
Sbjct: 175 RISIRYIEMKNHYDS-KKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
            RLI+GE+     ++    D ++R+N   L   +DR +++
Sbjct: 234 SRLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLL 273


>gi|307637177|gb|ADN79627.1| DNA polymerase III beta subunit [Helicobacter pylori 908]
 gi|325995766|gb|ADZ51171.1| DNA polymerase III beta subunit [Helicobacter pylori 2018]
 gi|325997362|gb|ADZ49570.1| DNA polymerase III beta subunit [Helicobacter pylori 2017]
          Length = 374

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ V+     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -AFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|227487661|ref|ZP_03917977.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227541369|ref|ZP_03971418.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227092355|gb|EEI27667.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227182920|gb|EEI63892.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 391

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 91/395 (23%), Positives = 175/395 (44%), Gaps = 29/395 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D  + +      +  +   PV   +++ A D  LE+     E+     + A V   
Sbjct: 10  VAQDDFADAVSWVAHNLPTRPVQPVLRGLVITATDDGLELAGFDYEVSTKVRLNAQVLQN 69

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G + V+  L+ DI   L  G      + +E  ++V +S G + F L   P  E+PS    
Sbjct: 70  GRLAVAGKLISDITSSLAAG--TVEVETDETHSKVLLSCGKAKFELPIIPLDEYPSLPAM 127

Query: 125 EYVYSFELASSV----LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 E A  V        V +   A   ++    L GI  H++ E   L   ATD  R
Sbjct: 128 P-----ETAGRVDPHQFTEAVSQVATAAGKDDALPMLTGI--HVDIEGSDLIMAATDRFR 180

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           LAV  ++   ++  +  S+++P + + +  + + +  +  ++V+L    I +  E+   +
Sbjct: 181 LAVRHLEWEPSRELEKSSLLIPARTLLDTAKSMDNGLNKPLEVALGNGLIGMVTENRQTT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL+D EFPNY  ++P +++     +   L +A+ RVS+++    Q ++++ S+ ++ +T
Sbjct: 241 TRLLDAEFPNYNPLLPKTHNYIATCDVDELLKALRRVSLVADKSGQ-IRMTFSAGQVSLT 299

Query: 299 VDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
             N + G A E +   +   E  + I FN  YL + ++ + S       V+F    SN S
Sbjct: 300 AANSESGAAEEVLPAAFQGVEDSLVIAFNPAYLRDGLNVMRS-----KRVMFGFTDSNRS 354

Query: 357 VFIRGKDKDSKNNKDNKVNA------FYVLMPMRI 385
             +  + ++      +   A       Y+LMP+R+
Sbjct: 355 AILTPEPEELPEAAADGSFASPHSAVTYLLMPVRL 389


>gi|260904980|ref|ZP_05913302.1| DNA polymerase III, beta subunit [Brevibacterium linens BL2]
          Length = 379

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 96/394 (24%), Positives = 172/394 (43%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  V R  + + +  A + +  + + PV   +L+ A  G   ++ S  + E++  +  +
Sbjct: 8   LKFKVNRDVLADAVTWATKTLPSRPSAPVLTGILITAEAGG-TVRLSVFDYEVSSRVEIA 66

Query: 61  VDVC--GSITVSAHLLYDIVRKL--QDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            DV   G++ VS  LL DI + L  QD          ++ ++V+++   S F L + P  
Sbjct: 67  ADVVTPGTVLVSGRLLADISKALPNQD------VTLEQIDSKVDVTCSSSRFSLMTMPVG 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+PS  +     S  +++   +N V +   A + ++    L  +   I  E  K+  +AT
Sbjct: 121 EYPSLPQVPDA-SGTVSAGEFQNAVSQVTIATSKDDTLPILTSVRVEIEGE--KVTLLAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLS----ESRIHLN 231
           D +RLAV E         + ++ + R   G  L  +S S    V + LS    +  I   
Sbjct: 178 DRYRLAVREFTWNPGRPDVSAVALLR---GRTLSDVSKSLGGDVTIGLSNDAGKDLISFT 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 +  L++GE+P  +++ P S      V    LR+AV RVS+++  R   ++  +S
Sbjct: 235 SAGRVTTSLLVEGEYPKVRSLFPDSVPIHAIVETGVLREAVRRVSLVAE-RNTPLRFEVS 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +     D  +A E++       P+ + FN  Y+ E +  I S       V F   
Sbjct: 294 DGMLTLHAGTGDDAQASEAVEAVLQGDPITVGFNPHYIAEGLAAIES-----PYVNFSFT 348

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                V I G+ +D ++  D      Y+LMP RI
Sbjct: 349 QPMKPVIISGQ-RDLESTADESYR--YLLMPTRI 379


>gi|261838254|gb|ACX98020.1| DNA polymerase III beta subunit [Helicobacter pylori 51]
 gi|317179130|dbj|BAJ56918.1| DNA polymerase III subunit beta [Helicobacter pylori F30]
          Length = 374

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ V+     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|158421575|ref|YP_001527802.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
 gi|158342818|gb|ABW35104.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
          Length = 367

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 58/193 (30%), Positives = 97/193 (50%), Gaps = 14/193 (7%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
           +A + E  +    GI F   E  L+L  VA+DG+R+A A  D+     +    I+    V
Sbjct: 148 YAASHEAFQAVFRGILFEGRESGLRL--VASDGYRVATA--DLPTPPPQPFKAIIHAAHV 203

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL--IDGEFPNYQNVIPCSNDKELRV 263
            E+LR+L  +D++   SL     HL + +  ++V L  +DGEFP Y+ VIP        V
Sbjct: 204 RELLRLLGGRDTA---SLQFDGTHLTVRAGGITVSLPYMDGEFPAYERVIPAVTGG-FAV 259

Query: 264 NCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTVDNPDMGKAIESMNVY--YNECPM 320
               LR++V+RV+IMS       ++L+L+  +L +T    D G   + + V   + + P 
Sbjct: 260 PAQALRESVNRVAIMSDKNANNRLELTLAEGRLVLTAHG-DYGTGQDVLEVTDRHGDPPA 318

Query: 321 DICFNYKYLLEII 333
            +  N ++L E +
Sbjct: 319 QLAVNARFLQEAL 331


>gi|254779479|ref|YP_003057584.1| DNA polymerase III subunit beta [Helicobacter pylori B38]
 gi|254001390|emb|CAX29379.1| DNA polymerase III subunit beta [Helicobacter pylori B38]
          Length = 374

 Score = 79.0 bits (193), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|257437733|ref|ZP_05613488.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257200040|gb|EEU98324.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 221

 Score = 78.6 bits (192), Expect = 1e-12,   Method: Compositional matrix adjust.
 Identities = 52/185 (28%), Positives = 100/185 (54%), Gaps = 7/185 (3%)

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS- 217
           G  F I+ +  KL  VA DG+RLA+ E  + A   K   IIVP K + E+  +L++ D  
Sbjct: 9   GELFEISPD--KLTVVALDGYRLAIVERPVEA--IKEIRIIVPSKTMNEVSHLLANDDEE 64

Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           +V +S +   +       ++  RLI+GEF NY NVIP  +   + ++     + ++R S+
Sbjct: 65  TVHISANRRYVVFTTAGYTIMSRLIEGEFLNYHNVIPNGSRTSVVLDTKEFIETIERASL 124

Query: 278 MSSVRIQ-AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
           + + R++  +++S +  K+ +     ++G+ ++  N       ++I FN +YLL+ + N 
Sbjct: 125 IITERLKNPLRISFTEGKVVVRCQT-NLGRVVDEFNAQCEGDEVEIGFNNRYLLDALRNA 183

Query: 337 SSDEV 341
            +++V
Sbjct: 184 RTEQV 188


>gi|317181822|dbj|BAJ59606.1| DNA polymerase III subunit beta [Helicobacter pylori F57]
 gi|332673707|gb|AEE70524.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori
           83]
          Length = 374

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 84/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ V+     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|308061829|gb|ADO03717.1| DNA polymerase III subunit beta [Helicobacter pylori Cuz20]
          Length = 374

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|206603336|gb|EDZ39816.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way
           CG']
          Length = 387

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 94/404 (23%), Positives = 176/404 (43%), Gaps = 42/404 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV++   L+ L     + ERKN + V   +L++A D    + A+  +      +P  
Sbjct: 1   MEITVDQEAFLDGLQRVALLAERKNLVQVGSFILIEARDQKAILFATDNQTGGRFEVPCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G  TV+   L+ + R+L  G ++S  + EN       I      + L+     E+ 
Sbjct: 61  VRTPGKTTVAGKKLHQLFRELPAG-KVSLTRLEN---GSTRIERERLMYDLKGIDPDEYV 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATD 177
              E +  YSF ++   +  L+ +T   +  +E +  +NG+ FH   E   ++L  V TD
Sbjct: 117 GFPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESK-PMNGVLFHRVREGSTVRLNIVGTD 175

Query: 178 GHRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           GHRL    V        D+  Q     S  + RK   + L  +   D        E  ++
Sbjct: 176 GHRLHHGTVLLGEDAGFDLAGQTE---SRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVN 232

Query: 230 LNIESLSMS-----VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
               +          RL+   FPNY++  P   +  +  + + L  ++ R+S++S  + +
Sbjct: 233 PKYATFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAE 292

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY---KYLLEII--DNISSD 339
            V  S  +  L ++  N ++G++ E++ V+    P  + FN    + LL++   + +  D
Sbjct: 293 IV-FSWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMD 351

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            V+D +      SS  S++   ++ DS+          YV+MP+
Sbjct: 352 AVMDTDPA--KSSSMPSIWSCAEEPDSR----------YVIMPL 383


>gi|51598692|ref|YP_072880.1| DNA polymerase III, subunit beta [Borrelia garinii PBi]
 gi|51573263|gb|AAU07288.1| DNA polymerase III, subunit beta [Borrelia garinii PBi]
          Length = 386

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 56/216 (25%), Positives = 113/216 (52%), Gaps = 13/216 (6%)

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           E+Y +  EL     K ++ R  F+   +E +  LNGI+F    ED KL  V+T+GHR+++
Sbjct: 140 EDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGIYF-TKGEDSKLLLVSTNGHRMSI 198

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++  ++  LI 
Sbjct: 199 CKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYVEFDNYKIACSLIS 255

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G +P+Y+++IP   + +  V+ + L+  + RV++      ++ KL L+  +L   +   D
Sbjct: 256 GNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYVD---KSKKLILTFSELQFKLLGED 312

Query: 304 M--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           +  G+     I++ N  Y+     +  N  Y +E I
Sbjct: 313 LITGRKGEFFIKNPNYLYDGSDEVVAINISYFIEAI 348


>gi|124516517|gb|EAY58025.1| DNA polymerase III, beta chain [Leptospirillum rubarum]
 gi|206603406|gb|EDZ39886.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way
           CG']
          Length = 387

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 93/404 (23%), Positives = 176/404 (43%), Gaps = 42/404 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV++   L+ L     + ERKN + +   +L++A D    + A+  +      +P  
Sbjct: 1   MEITVDQEAFLDGLQRVALLAERKNLVQIGSFILIEARDQKAILFATDNQTGGRFEVPCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK-ENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G  TV+   L+ + R+L  G ++S  + EN       I      + L+     E+ 
Sbjct: 61  VRTPGKTTVAGKKLHQLFRELPSG-KVSLTRLEN---GSTRIERERLMYDLKGIDPEEYV 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATD 177
              E +  YSF ++   +  L+ +T   +  +E +  +NG+ FH   E   ++L  V TD
Sbjct: 117 GFPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESK-PMNGVLFHRVREGSTVRLNIVGTD 175

Query: 178 GHRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           GHRL    V        D+  Q     S  + RK   + L  +   D        E  ++
Sbjct: 176 GHRLHHGTVLLGEDAGYDLAGQTE---SRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVN 232

Query: 230 LNIESLSMS-----VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
               +          RL+   FPNY++  P   +  +  + + L  ++ R+S++S  + +
Sbjct: 233 PKYATFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAE 292

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY---KYLLEII--DNISSD 339
            V  S  +  L ++  N ++G++ E++ V+    P  + FN    + LL++   + +  D
Sbjct: 293 IV-FSWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMD 351

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            V+D +      SS  S++   ++ DS+          YV+MP+
Sbjct: 352 AVMDPDPA--KSSSMPSIWSCAEEPDSR----------YVIMPL 383


>gi|193216432|ref|YP_001999674.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1]
 gi|193001755|gb|ACF06970.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1]
          Length = 365

 Score = 78.6 bits (192), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 89/340 (26%), Positives = 159/340 (46%), Gaps = 20/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I + +  + E +    + +++   IPV   +L++A D +L I AS  EI I   IP+S
Sbjct: 1   MEIKINKWLLDEAIERVAKAVDQNPFIPVMKGILVEAQDSMLTIIASNGEISIKHVIPSS 60

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           VD+     G I V   LL +IV+KL DG  IS   E  L T   ++     + L  +  S
Sbjct: 61  VDMQILSPGIILVELSLLRNIVKKL-DG-DISLKSEGNLLT---VTTEFDRYSLNLYDTS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P      Y  + ++    LK++ +   FA +  E    L  +  +I+  D KL  VAT
Sbjct: 116 EYPEIDFAVYGETLKIKWDELKSITKNVSFAASNNEANLVLCCV--NISAHDGKLKFVAT 173

Query: 177 DGHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           + +R A    E+D  A      ++ +  K + + L     KD SV +++SE +I   ++S
Sbjct: 174 NKYRYAEETKEIDSDANF----NVSIQAKNLKD-LTAFDFKD-SVLLNISEHKIAFEVDS 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  ++++  + +   ++P      L++    L   + + S++ S     +KLS+    
Sbjct: 228 TIIQSKVVNQPYQDVSRIVPREFATCLKIEKRELNNLLSKASVIISETNNKIKLSIVDGI 287

Query: 295 LCMTVDNPDMGKA-IESMNVYYNECPMDICFNYKYLLEII 333
           L +     ++  A I + N  Y+   + +  N KYL E I
Sbjct: 288 LMIASTRDEIANAEIITKNFSYDGDELKLALNSKYLREAI 327


>gi|194097592|ref|YP_002000628.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
 gi|193932882|gb|ACF28706.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
          Length = 167

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 49/179 (27%), Positives = 100/179 (55%), Gaps = 14/179 (7%)

Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
           E+ ++L++ D  +++ L + ++       ++  ++IDG+FP++  VIP  NDK   ++  
Sbjct: 3   ELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLSRA 62

Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNY 326
            L  A++RVSI+++ + +  +L L    L +   N +  +A E + + Y    +++ FN 
Sbjct: 63  ELLGALERVSILANEKFRGARLFLQPGLLSVVCSNNEQEEAREEIEIAYQGGELEVGFNI 122

Query: 327 KYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            YL++++ NI SD++   ++ F  D++ S++F         NN + K    Y++MPMRI
Sbjct: 123 GYLMDVLRNIHSDDM---QLAFG-DANRSTLFT------VPNNPNFK----YIVMPMRI 167


>gi|225552236|ref|ZP_03773176.1| DNA polymerase III, beta subunit [Borrelia sp. SV1]
 gi|225371234|gb|EEH00664.1| DNA polymerase III, beta subunit [Borrelia sp. SV1]
          Length = 385

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 54/218 (24%), Positives = 115/218 (52%), Gaps = 13/218 (5%)

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL  V+T+GHR++
Sbjct: 138 DEDYTFEIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKLLLVSTNGHRMS 196

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           + + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++  ++  LI
Sbjct: 197 ICKTEVMVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVEFDNYKIACSLI 253

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           +G +P+Y+++IP     +  V+   L+  + RV++      ++ KL L+  +L + +   
Sbjct: 254 NGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVD---KSRKLVLTFSELQLKLLGE 310

Query: 303 DM--GKA----IESMNVYYNECPMDICFNYKYLLEIID 334
           D+  G+     I+  N  Y+     +  N  Y +E I+
Sbjct: 311 DLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAIN 348


>gi|308182656|ref|YP_003926783.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4]
 gi|308064841|gb|ADO06733.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4]
          Length = 374

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N+E   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQEHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSS----TIKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|262066101|ref|ZP_06025713.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291380196|gb|EFE87714.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 381

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 98/408 (24%), Positives = 184/408 (45%), Gaps = 52/408 (12%)

Query: 1   MKITVERSDILELLGHACRIIERK---NTI-PVSCHVLLQANDGLLEIKASGPEIEITGA 56
           M I V R + L     A R +E+    N I P+   V  +  D   ++  +G  ++ T  
Sbjct: 1   MHIKVNRQNFL----TAVRTVEKSIKDNLIKPILSCVYAKVKDN--KVYFTGTNLDTT-- 52

Query: 57  IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
           I  S+DV      G +   A ++ + +++++D   +      E G  + I   DS     
Sbjct: 53  IKTSIDVNEVIKEGEVAFRASIIDEYLKEIKDEFVVL---RVENGNILFIETEDSTTEYD 109

Query: 112 SFPESEFPSTKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
            F   ++PST E     E  + FE+ S  L  + E+  F+  T +    +N I    N +
Sbjct: 110 VFTTEDYPSTFEYINLNENNFKFEMPSQELVEIFEKVLFSADTPD-NIAMNCIRIESNNK 168

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSES 226
            L    V+T+ +RL   + D+  +I    ++ VP  A+  +++I+   D+  +K+    +
Sbjct: 169 TLNF--VSTNTYRLTYLKKDVENEINDF-AVSVPADAISSVVKIVKGLDNELIKIYKEGA 225

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++   +  ++  +LI+  FPNY +++   + DK+L +N       + RV I S   +++
Sbjct: 226 HLYFKYKETTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMES 285

Query: 286 VKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
              S            KL ++  N D+ +  E +N+ +    + I  N KYLLE I NI 
Sbjct: 286 KYSSTYQFKHSDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIP 344

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++    E++     +NS+V +  KDK+         +  Y+LMP+ +
Sbjct: 345 KEK----ELILEFMYANSAVKVYEKDKE---------DYIYILMPLAL 379


>gi|260654350|ref|ZP_05859840.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1]
 gi|260630983|gb|EEX49177.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1]
          Length = 361

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 64/243 (26%), Positives = 113/243 (46%), Gaps = 9/243 (3%)

Query: 104 GDSNFYLQSFPESEFPSTKEEEYVYSFELASS--VLKNLVERTHFAMATEEIRYYLNGIF 161
           G + + +  FP   FP          F L  S  +++ L E       +EE   Y+    
Sbjct: 86  GKNQYDVAVFPTDLFPDMPRPSSDEPFALVPSGELIRVLDEGIVAGSVSEEFPRYIGACQ 145

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSV 219
               + +L+  AV+TDG RL++++   + +     S++VP   + E  R L S   D++V
Sbjct: 146 LQCQKGELR--AVSTDGRRLSLSKC--LCESGTDGSVLVPLAPMKEFQRFLQSVESDATV 201

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +V   ++ +H  +  L  SVR I+  FPNY+ V+       L VN      A++RV ++ 
Sbjct: 202 RVFTDQALVHFCLPGLEYSVRRIESSFPNYEKVLRKDFTSTLTVNRGLFIGALERVDLLV 261

Query: 280 SVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
                 V ++LS S ++ +   +P++GKA E ++       +   FN  Y+L+ +     
Sbjct: 262 RENNHLVVVTLSPSGEMTLVGRSPEVGKACEHLSGMITGESLKAAFNANYMLDGLRAFHG 321

Query: 339 DEV 341
           DEV
Sbjct: 322 DEV 324


>gi|1706498|sp|P52620|DPO3B_VIBHA RecName: Full=DNA polymerase III subunit beta
 gi|1006570|gb|AAA78258.1| DNA polymerase III holoenzyme beta subunit [Vibrio harveyi]
          Length = 145

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFA 147
           + ++ +      L  S L+ L+E+T F+
Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFS 145


>gi|317177661|dbj|BAJ55450.1| DNA polymerase III subunit beta [Helicobacter pylori F16]
          Length = 374

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|260588816|ref|ZP_05854729.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583]
 gi|260540595|gb|EEX21164.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583]
          Length = 370

 Score = 78.2 bits (191), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 79/393 (20%), Positives = 180/393 (45%), Gaps = 40/393 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +    + +  K T+P+   +L+ A+   ++  ++  E+ I   +   
Sbjct: 1   MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A +  +IVRKL D   ++   + +L   +       N           P 
Sbjct: 61  VLEKGIIALDAKIFSEIVRKLPDN-DVTIETDEKLNATITCEKAKFN----------IPG 109

Query: 121 TKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              E++ Y           ++   LK ++ +T F++A  E    + G  F I  E+  L 
Sbjct: 110 KSGEDFSYLPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLR 167

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLN 231
            ++ DGHR+++ ++ +  +  +   ++VP K + EI +ILS + +  V++ LS + I   
Sbjct: 168 VISLDGHRISIRKIGL-KENCEDRKVVVPGKTLNEISKILSGELEDMVEIYLSANHILFE 226

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSL 290
            +   +  RLI+GE+     ++    + ++++N       +DR +++      + + +++
Sbjct: 227 FDDTKVVSRLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINI 286

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            + ++ + +D+  +G   E +++      + I FN K+L++ +  I      D+EV   L
Sbjct: 287 QNGQMELRIDS-QIGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYL 340

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            ++ +  FIR          D+     Y+++P+
Sbjct: 341 MNAKAPCFIR----------DDNQQYIYLILPV 363


>gi|317012318|gb|ADU82926.1| DNA polymerase III subunit beta [Helicobacter pylori Lithuania75]
          Length = 374

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 83/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ V+     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|310779069|ref|YP_003967402.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
 gi|309748392|gb|ADO83054.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
          Length = 371

 Score = 77.8 bits (190), Expect = 2e-12,   Method: Compositional matrix adjust.
 Identities = 96/390 (24%), Positives = 172/390 (44%), Gaps = 30/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M I V+R + L+ L    + I      P+ SC  L    DG + ++ +  E+ IT  +  
Sbjct: 1   MNIKVDRQEFLKTLRVVEKAIAENKIRPIISCVYLEAQEDGKIVLRGTNLELTITSFMEG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G    S  L+ + ++++ D       KE  L  E   S   S F +   PE E+P
Sbjct: 61  EVQEKGKAVFSYQLVEEYLKEITDKEINLVVKEGLLIIET--SDSSSEFSVME-PE-EYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             K+         +   L  ++E+T F  +T      +N +   I  ED K+  VATD +
Sbjct: 117 RIKDSIEGTGIVFSREKLSEMLEKTKFGASTSIDNLSINCVRIEI--EDKKVKVVATDTY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMS 238
           RL   E DI  +      + +P   V  +++ L + D  +V+    E+++   + +  + 
Sbjct: 175 RLVYLEDDI--EYDGSLKVSIPLTTVDALIKTLRTLDEENVEFKFEENQVFFKVGNSMVL 232

Query: 239 VRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSD 293
            R+ID  FP+Y  ++   S++K++  N     + + RV I     S  +  A+  SL + 
Sbjct: 233 SRVIDLPFPDYNGIMKSVSHNKKISANTEEFSKILKRVQIFVKNNSESKYSAI-FSLEAG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              ++    +  K  E + V      + I  N K+LL+ I ++      +D ++  L +S
Sbjct: 292 SFYVS-GVSETAKVNEHIEVEQEGEDVKISLNVKFLLDFIQHLDK----NDRLIIDLLTS 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           NS++ +       KN+KD K    Y+ MP+
Sbjct: 347 NSAIQL-------KNSKDEKY--LYIAMPL 367


>gi|294783008|ref|ZP_06748332.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294479886|gb|EFG27663.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 381

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 97/406 (23%), Positives = 183/406 (45%), Gaps = 52/406 (12%)

Query: 1   MKITVERSDILELLGHACRIIERK---NTI-PVSCHVLLQANDGLLEIKASGPEIEITGA 56
           M I V R + L     A RI+E+    N I P+   V  +  D   ++  +G  ++ T  
Sbjct: 1   MHIKVNRQNFL----TAVRIVEKSIKDNKIKPILSCVYAKVKDN--KVYFTGTNLDTT-- 52

Query: 57  IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
           I  S+DV      G +  S  ++ + +++++D   +      E G  + I   DS     
Sbjct: 53  IKTSIDVNEVIREGEVAFSPSIIDEYLKEIKDEFVVL---RVENGNILFIETEDSTTEYD 109

Query: 112 SFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
            F   ++P+T E     E  + FE+ S  L  + E+  F+  T +    +N I    N +
Sbjct: 110 VFTTEDYPNTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPD-NIAMNCIRIESNNK 168

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSES 226
            L    V+T+ +RL   + D+  +I    ++ +P   +  I++I+   D+  +K+   ++
Sbjct: 169 TLNF--VSTNTYRLTYLKKDVEKEINNF-AVSIPADTISSIVKIVKGLDNELIKIYKEDA 225

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++   +  ++  +LI+  FPNY +++   + DK+L +N       + RV I S   +++
Sbjct: 226 HLYFKYKETTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMES 285

Query: 286 VKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
              S            KL ++  N D+ +  E +N+ +    + I  N KYLLE I NI 
Sbjct: 286 KYSSTYQFKHGINEESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIP 344

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            ++    E+V     +NS+V +  KD +         +  Y+LMP+
Sbjct: 345 KEK----ELVLEFMYANSAVKVYEKDNE---------DYIYILMPL 377


>gi|297379695|gb|ADI34582.1| DNA polymerase III, beta subunit [Helicobacter pylori v225d]
          Length = 374

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D +     K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDEEGVGTINGKKFLDIISCLKDSSITLETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|29829904|ref|NP_824538.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680]
 gi|29607013|dbj|BAC71073.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis
           MA-4680]
          Length = 376

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 147/350 (42%), Gaps = 20/350 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  VER    E +G A R +  ++ +PV   +LL A+ G L +  SG + E    I   
Sbjct: 1   MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSV--SGFDFEAAARIGTD 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +    G + V    L DI R L DG  +S   E   GT   +  G + F L + P  E+
Sbjct: 59  AETVAEGQVLVLGRRLLDICRVLPDG-PVSCVLE---GTRFTVEAGGTRFGLSTLPREEY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+       Y   + +    + V +   A   ++    L G+   ++ + + L   A+D 
Sbjct: 115 PALPVPPEPYG-SVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTLA--ASDR 171

Query: 179 HRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL-NIESL 235
           +R AV  +    + A   +   ++P + + +I R L ++   V++    +   L   E  
Sbjct: 172 YRYAVRTLGWQPEAAADGVVEALLPARRLLDIARSL-ARSGDVRIGFDRAAGGLIGFEGG 230

Query: 236 SMS--VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS- 292
            M   VRL++G  P Y ++   +      V C  L +AV RV++++      V+L  S+ 
Sbjct: 231 RMRTVVRLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVAEAN-SPVRLDFSAP 289

Query: 293 -DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
              + +     D   A     V      +   FN  YLL+ +++  +  V
Sbjct: 290 DGTVLLGAGYGDDVAAQRLPAVLSGAEEVTAAFNPGYLLDALNSFEAPRV 339


>gi|227549438|ref|ZP_03979487.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078515|gb|EEI16478.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 406

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 91/406 (22%), Positives = 176/406 (43%), Gaps = 47/406 (11%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+ + +    R +  KNT PV   +++ A+D  LE      E+     I A V   
Sbjct: 21  VHKEDLSDAVAWVARSLPTKNTQPVLRAIVITADDSGLEFAGFDYEVSSRVRIGAEVSQP 80

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESEFPST 121
           G + V+  L+ DIV  +         K  E+   G+++ +  G + F L   P  ++P  
Sbjct: 81  GRVAVAGKLMADIVANMP-------AKPMEVSTDGSKMLLQGGSARFELPLMPLDDYPQL 133

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                V    ++ S     V +   A   ++    L G+   I+   L+L   ATD  RL
Sbjct: 134 PTLPEVTG-RISPSAFVGAVTQVASAAGRDDTLPMLTGVHMEISGNALQLT--ATDRFRL 190

Query: 182 AV-------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SES 226
           A+       A  D+ A+      ++VP K + +  R L +  +  V++++        + 
Sbjct: 191 AIRRLQWEPASDDVEAK------LLVPAKTLLDNARTLDTHVEEPVEIAVGAAGNVGGDG 244

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
              L+  +   + R++D +FPN Q ++P ++     V    L +A+ RVS+++    Q V
Sbjct: 245 LFGLHSGNRETTTRMLDADFPNIQPLLPKTHTSMASVEIAPLVEAIRRVSLVADRNAQ-V 303

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDE 345
           ++     ++ +     D G+A E++   ++    + I FN  YL + +  I +     + 
Sbjct: 304 RMHFHPGEVTLHASGADSGEASETVAAAFSGADELLIAFNSGYLKDGLAVIGT-----NR 358

Query: 346 VVFRL-DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           VVF   ++S  ++ I   ++  +   D        +  Y+LMP+R+
Sbjct: 359 VVFGFTEASRPAIMIPEPEQLPEAEADGTFPTPATDFTYLLMPVRL 404


>gi|237739903|ref|ZP_04570384.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
 gi|229423511|gb|EEO38558.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
          Length = 381

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 98/406 (24%), Positives = 183/406 (45%), Gaps = 52/406 (12%)

Query: 1   MKITVERSDILELLGHACRIIERK---NTI-PVSCHVLLQANDGLLEIKASGPEIEITGA 56
           M I V R + L     A RI+E+    N I P+   V  +  D   ++  +G  ++ T  
Sbjct: 1   MHIKVNRQNFL----TAVRIVEKSIKDNKIKPILSCVYAKVKDN--KVYFTGTNLDTT-- 52

Query: 57  IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
           I  S+DV      G +  S  ++ + +++++D   +      E G  + I   DS     
Sbjct: 53  IKTSIDVNEVIREGEVAFSPSIIDEYLKEIKDEFVVL---RVENGNILFIETEDSTTEYD 109

Query: 112 SFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
            F   ++P+T E     E  + FE+ S  L  + E+  F+  T +    +N I    N +
Sbjct: 110 VFTTEDYPNTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPD-NIAMNCIRIESNNK 168

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSES 226
            L    V+T+ +RL   + D+  +I    ++ VP   +  I++I+   D+  +K+   ++
Sbjct: 169 TLNF--VSTNTYRLTYLKKDVEKEINDF-AVSVPADTISSIVKIVKGLDNELIKIYKEDA 225

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++   +  ++  +LI+  FPNY +++   + DK+L +N       + RV I S   +++
Sbjct: 226 HLYFKYKETTIITKLIELRFPNYVDILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMES 285

Query: 286 VKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
              S            KL ++  N D+ +  E +N+ +    + I  N KYLLE I NI 
Sbjct: 286 KYSSTYQFKHGDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIP 344

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            ++    E+V     +NS+V +  KD +         +  Y+LMP+
Sbjct: 345 KEK----ELVLEFMYANSAVKVYEKDNE---------DYIYILMPL 377


>gi|195953462|ref|YP_002121752.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933074|gb|ACG57774.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 398

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 94/374 (25%), Positives = 176/374 (47%), Gaps = 34/374 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPAS 60
           +  ++ +  +++  A    E K+ +P+  + L++  +    +KA+  E  I+I G  P  
Sbjct: 10  VVFDKKEFDDIISKAKNTTESKSILPILSNFLIEIENSKYFVKATDLENYIKIEGR-PEQ 68

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPESE 117
            +V  ++ +++  L DIV+ L   A  +    N+   +   V I  G S F L     SE
Sbjct: 69  SEVSCTLCINSKKLSDIVKSLS-SATFTLTLVNDPSAQSSYVQIQSGRSKFKLTLAEASE 127

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCA-- 173
           FP+  E E  + S  +   +L   +ERT +A+A E+ +   L G+    +  D K     
Sbjct: 128 FPAFPEIENDMISNNIPGFMLLEGLERTDYAVAKEDAMNPTLTGVNMIFDNNDGKSFVEF 187

Query: 174 VATDGHRLAV-------AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
            ATDG+RL V        E +    ++ M S  +PRK V +IL+ +++K S V +     
Sbjct: 188 AATDGNRLTVFKKYYPKDESNENITLSNM-SFTIPRKTV-KILKSITNKASFVNIYYKSG 245

Query: 227 RIHLNIESLSMSV----RLIDGEFPNYQNVIPCSNDKEL--RVNCTNLRQAVDRVSIMSS 280
              L  E  +M      RL++GEFP+Y+  I  + D+ L  ++   +LR  + R+S  + 
Sbjct: 246 SSFLIFEDKAMGCTLFSRLLEGEFPDYKTYIE-NIDRPLNAKIQRKDLRDLIRRLSFSAD 304

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID------ 334
             +  +KL+ + + L     + +  +  + +++ Y      +  N +YL E +D      
Sbjct: 305 GTVIPIKLTFADNILIGETSDRESTEGRDEIDIDYVGEAFSVDLNARYLKESVDYAPCDY 364

Query: 335 -NISSDEVVDDEVV 347
            NIS+D+ ++  +V
Sbjct: 365 INISTDDPMNGMLV 378


>gi|225028837|ref|ZP_03718029.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353]
 gi|224953833|gb|EEG35042.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353]
          Length = 370

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/388 (21%), Positives = 178/388 (45%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  ++  L  +    + +  K T+ +   +L++A D  +++ A+  E+ I   I  +
Sbjct: 1   MKITCSKNQFLYGVNTVSKAVSNKTTMDILQCILIEAYDDCIKLTANDTELGIETVIEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +I++K+ D        E +   + NI        +      +F  
Sbjct: 61  IIEPGKIALEAKIFSEIIKKIPDN---DVCIETDESGKTNIECEQIQCSIMGRKGDDFSH 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L+   LK ++ +T F+++  E    + G    I  E+ K+   + DGHR
Sbjct: 118 LPEIEKENKITLSQFDLKEVIRQTIFSVSDNENNKLMTGELLSI--ENNKMTVTSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLSMS 238
           ++V  +++     KM  +IVP K + E+ +IL   +KD ++ + L++  I        + 
Sbjct: 176 ISVRNIELQESYPKM-EVIVPGKTLSEVSKILPGEAKD-TINLYLTDKHILFEFGETKVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-MSSVRIQAVKLSLSSDKLCM 297
            RL++G+F N   ++    + +L +N   L + +DR ++ +     + + L + ++++ +
Sbjct: 234 SRLLEGKFYNIGQMLSNDYETKLTINKMELLRCLDRSTLFVKESDKKPIILKIENEQMNL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            + +  +G   + + +      + I FN K+L++ +  I      ++EV   L +S +  
Sbjct: 294 MI-SSQIGSMKDQIAISKEGKDLVIGFNPKFLVDALRVID-----EEEVTIYLINSIAPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IR          D K +  Y+++P+ +
Sbjct: 348 IIR----------DEKSSYLYLILPINV 365


>gi|260891932|ref|YP_003238029.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
 gi|260864073|gb|ACX51179.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
          Length = 372

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 72/341 (21%), Positives = 153/341 (44%), Gaps = 17/341 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+ T+ + D+  +L    R I  K ++P    +L +     L   A+  ++++T  +P  
Sbjct: 1   MQFTISQEDLERVLSVCLRCIPSKPSMPQLAGILFRKEGSKLTATATDLDVQVTVELPRV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G + + A   +D+VR+L +   +   +      +V +S+      L      EFP
Sbjct: 61  NLEEEGELWLPAKETFDLVRRLPEDVLVELRQAG--SNQVLLSYPGGEARLAGMDPGEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E+      E     L + +    +A A +++R    G+    +  + +L   ATDGH
Sbjct: 119 LI-EQSVEEVLEFPGEGLLDALRYVLYAAAPDDLRPIFTGVEISYSSPEGELTFAATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEIL---RILSSKDSSVKVSLSESRIHLNIESLS 236
           RLAV       +  ++ S +VP + + E+L   R+L  +   +++  + +  H   E + 
Sbjct: 178 RLAVFR---RGEEPRLESRVVPAQYLKEVLVLGRLLGEEPKRIRLGKTTASFHW--EEVE 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSS 292
           +  RLI+G+FP++Q  +P       L +    L   ++R  +++  +   + AV L    
Sbjct: 233 LYSRLIEGKFPDWQQALPKDPPATSLSLTVGTLLSCLERARVIARAQASGVPAVFLVKEG 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           + + +   + + G+  E ++       + + FN  YL+E +
Sbjct: 293 EGVRIEARS-EAGEFKEHVDGRAEGEDLTLAFNADYLMEAL 332


>gi|319654119|ref|ZP_08008209.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
 gi|317394204|gb|EFV74952.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
          Length = 369

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 55/207 (26%), Positives = 104/207 (50%), Gaps = 9/207 (4%)

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVN-ISHGDSNFYLQSFPESEFPSTKEEEYV 127
           V A L  D+++KL  G  +   ++  +   V   S+G S   +  FP+   P   EE  +
Sbjct: 72  VPAKLFLDMMKKLPKGEVVIIVEDKNVIILVGKSSYGISTLAIDEFPK---PVAYEEGKI 128

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
           +  E      ++L    H A +  E R  L G+  HI      L  +ATD HRL    V 
Sbjct: 129 FQVE-GPEFAQSLSAMIH-ACSDSETRPILTGV--HIVSNGKYLTLIATDSHRLMATAVP 184

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           I+ +  +  +++VP+ ++ E+  +L+  +  V+ S+S++++ L  + +  + RL++G FP
Sbjct: 185 ILKETEEFKNVVVPKTSIKELTTLLTD-EKEVEFSISDNQLSLKTDGVLFTTRLLEGSFP 243

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDR 274
           +   +IP + + E+ V+     +A+DR
Sbjct: 244 DVTKLIPTTYESEVVVHREEFLKALDR 270


>gi|218887172|ref|YP_002436493.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758126|gb|ACL09025.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 388

 Score = 77.8 bits (190), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 92/406 (22%), Positives = 177/406 (43%), Gaps = 50/406 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + +++ D++E L  A  II  K        + L+A +G L + A+   IE  GA  A 
Sbjct: 1   MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           ++  G   V      D++RKL  G QI+   + E G  + I  G   +        + Q+
Sbjct: 61  IEQPGLAGVQGRAFVDLLRKLP-GGQITLKLDGESGN-LLIEQGRRKYKLPVNDSVWFQN 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  SEFP+        S   +   L+ L++R  F ++ E+    +  +      ++  + 
Sbjct: 119 F--SEFPADG------SVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQN-AIE 169

Query: 173 AVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           A   +GH+ A+        +A +P   I++ +K +GE+ + L + +  V++++SE R+H 
Sbjct: 170 ACGLNGHQFAMLRFTHDELMAMLPPEGILIQKKYLGELKKWLGTDE--VELNISEKRLHF 227

Query: 231 NI----ESLSMSVRLIDGEFPNYQNVIP-CSND--KELRVNCTNLRQAVDRVSIMSSVRI 283
                 E+ S+ +     ++P+Y N +   S D    L +   +   A+DR+ I ++   
Sbjct: 228 RTGDGKETFSLPLSYY--QYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSN 285

Query: 284 QAVKL----SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
           +        +     + ++    D+G A E++   Y+     I F  + L+EI+ +  S 
Sbjct: 286 RCTYFDLDGNGGGGDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRS- 344

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + +   L  S     + G D DS+           ++MPM+I
Sbjct: 345 ----ERLGLTLTGSEGPCGLTGSD-DSEYT--------VIIMPMKI 377


>gi|158317615|ref|YP_001510123.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
 gi|158113020|gb|ABW15217.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
          Length = 404

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 82/366 (22%), Positives = 159/366 (43%), Gaps = 44/366 (12%)

Query: 36  QANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95
           QA    L + A   E+     + A V   G + V   LL D+VR L D   +    E   
Sbjct: 62  QAPGPALTVSAFDSEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVVVEATE--- 118

Query: 96  GTEVNISHGDSNFYLQSFPESE------FPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149
            T V I  G + F + +    +      FP    E     F  A + +     R      
Sbjct: 119 -TRVIIECGAARFRIPALAAEDYPVLPAFPPPVGEVDTLGFAAAVAQVAPAAGR------ 171

Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII-VPRKAVGEI 208
            ++    L  +   I    L +  VATD +RLAV  +     + +  ++  VP + + ++
Sbjct: 172 -DDALPVLTAVRLEIARGGLTM--VATDRYRLAVRTIPWQPTVDEPDAVAHVPARLLADM 228

Query: 209 LRILSSKDS-SVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
            ++ ++    ++ + + E+   R  L++      VRL++G FPNY+ ++P +++  +   
Sbjct: 229 AKLPTTASRVALGMGVDEAGVLRFGLSVNGRQTIVRLLEGSFPNYRRLLPETSELTVTAP 288

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
              L  AV RV+++++ R   ++ + S+ ++     +    +A E + V Y+   + + F
Sbjct: 289 TAVLAAAVRRVALVAT-RTAPLRFTFSAGQVVAEAGDGGGAQASELVPVEYDGPELSVLF 347

Query: 325 NYKYLLEIIDNISSDEVV------DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY 378
           N  +LL+ +  +  DE +      D E+     +S+    + GKD    + +D +    Y
Sbjct: 348 NPAFLLDGLAAVEGDEAIIGFATADPEI-----ASSKPAVLTGKD----DGEDYR----Y 394

Query: 379 VLMPMR 384
           +LMP+R
Sbjct: 395 LLMPIR 400


>gi|315635402|ref|ZP_07890668.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri
           JV22]
 gi|315480160|gb|EFU70827.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri
           JV22]
          Length = 356

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++ +  ++      +E+K++  ++ H+ L+ N+  L IKA+  EI +   I   
Sbjct: 1   MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + V G  TV+   L  I+++L++   I     N L     I    S F L ++  +EFP
Sbjct: 61  TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNNLV----IKQNKSTFKLPTYDANEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E +    +++    N + +   A+     ++ LNG    I  +  K+  V+TD  
Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQ--KINFVSTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++ ++ +        +I+P+KA+ EI ++   +    K+S   + + ++ +      
Sbjct: 175 RLALSFLENMNN--DEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229

Query: 240 RLIDGEFPNYQNVIPCS 256
           +LI+G+FP+Y+ +IP +
Sbjct: 230 KLINGKFPDYERIIPSN 246


>gi|297570615|ref|YP_003696389.1| DNA polymerase III subunit beta [Arcanobacterium haemolyticum DSM
           20595]
 gi|296930962|gb|ADH91770.1| DNA polymerase III, beta subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 372

 Score = 77.4 bits (189), Expect = 3e-12,   Method: Compositional matrix adjust.
 Identities = 93/390 (23%), Positives = 182/390 (46%), Gaps = 29/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MKI VE     E +    R I  +  IPV   + +QA+ +G++ + +   +I     I A
Sbjct: 1   MKIIVEHDVFTEAVTWVARTIPNRPAIPVLAGLKIQASQNGIVSLGSRDSDISSHVDIEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPES 116
            V   G + V+  LL DI R L         K  EL   GT+++I  G S+F +++    
Sbjct: 61  DVLNAGDVLVNGRLLADICRALPR-------KPIELTLDGTKLDIECGSSHFSMKTMASE 113

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++    +   V      S+ L+ + + T  A + ++    L  +   IN + + L  +AT
Sbjct: 114 DYTDGTDMPPVIGTVDGSAWLEAISQVT-IAASNDDTLPLLVSVCLEINGDSIAL--MAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           D +RLAV +++       +   I+ R + + +I + L S    +++SLS+S I       
Sbjct: 171 DRYRLAVRDLEWTPTDTTISKRILVRASRLLDIAKALGSA-GPIEISLSDSLIGFAAGGK 229

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +V+LIDGE+P   ++ P  +   + +N  ++  A+ R  ++   +  AV+LS +  ++
Sbjct: 230 QNTVQLIDGEYPQVLSLFPAESAGYMVMNRADMLDAIKRSRLVVE-KNAAVRLSFTEGEV 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN- 354
            +     D  +A E++        + + FN  +L E    ++ ++V       RL  ++ 
Sbjct: 289 TIEAGQGDQAQASEALPADVVGEDVKMAFNPIFLQEGFSAMNCEKV-------RLSVTHP 341

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   +   +KD ++ +D ++    +LMP+R
Sbjct: 342 TKPAVMTAEKDGESVEDFRL----LLMPVR 367


>gi|331083520|ref|ZP_08332632.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404213|gb|EGG83761.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 405

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 79/393 (20%), Positives = 180/393 (45%), Gaps = 40/393 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +    + +  K T+P+   +L+ A+   ++  ++  E+ I   +   
Sbjct: 36  MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 95

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A +  +IVRKL D   ++   + +L   +       N           P 
Sbjct: 96  VLEKGIIALDAKIFSEIVRKLPDN-DVTIETDEKLNATITCEKAKFN----------IPG 144

Query: 121 TKEEEYVY--------SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              E++ Y           ++   LK ++ +T F++A  E    + G  F I  E+  L 
Sbjct: 145 KSGEDFSYLPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLR 202

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLN 231
            ++ DGHR+++ ++ +  +  +   ++VP K + EI +ILS + +  V++ LS + I   
Sbjct: 203 VISLDGHRISIRKIGL-KENCEDRKVVVPGKTLNEISKILSGELEDMVEIYLSANHILFE 261

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSL 290
            +   +  RLI+GE+     ++    + ++++N       +DR +++      + + +++
Sbjct: 262 FDDTKVVSRLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINI 321

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            + ++ + +D+  +G   E +++      + I FN K+L++ +  I      D+EV   L
Sbjct: 322 QNGQMELRIDS-QIGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYL 375

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            ++ +  FIR          D+     Y+++P+
Sbjct: 376 MNAKAPCFIR----------DDNQQYIYLILPV 398


>gi|219684428|ref|ZP_03539372.1| DNA polymerase III, beta subunit [Borrelia garinii PBr]
 gi|219672417|gb|EED29470.1| DNA polymerase III, beta subunit [Borrelia garinii PBr]
          Length = 386

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 55/216 (25%), Positives = 113/216 (52%), Gaps = 13/216 (6%)

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           E+Y +  EL     K ++ R  F+   +E +  LNG+FF    ED +L  V+T+GHR+++
Sbjct: 140 EDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGVFF-TKGEDSQLLLVSTNGHRMSI 198

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            + +++ +  +  + IVP K +   L+ L S +  VK+  S+ + ++  ++  ++  LI 
Sbjct: 199 CKTEVIVE--EDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYVEFDNYKIACSLIS 255

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           G +P+Y+++IP   + +  V+ + L+  + RV++      ++ KL L+  +L + +   D
Sbjct: 256 GNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYVD---KSKKLILTFSELQLKLLGED 312

Query: 304 M--GKA----IESMNVYYNECPMDICFNYKYLLEII 333
           +  G+     I++ N  Y      +  N  Y +E I
Sbjct: 313 LITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAI 348


>gi|218134377|ref|ZP_03463181.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989762|gb|EEC55773.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC
           43243]
          Length = 284

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 63/279 (22%), Positives = 132/279 (47%), Gaps = 7/279 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +    + I  + ++P+   +++ + +G ++  A+  E+ I   +   
Sbjct: 1   MKLVFSKSELSKGVNIVSKAIPTRTSMPILECIMIDSTEGQIKFTANDMELGIETIVEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  DIVRKL D   I+   ++     +   +   N   +S  +  F  
Sbjct: 61  ILEKGKIAIDAKIFSDIVRKLPDN-DITIQTDDNYNALITCENSKFNISGKSGDDFSFLP 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E++   S  L+   L+ LV +T F  A  +    + G  F + + +LK+  VA DGHR
Sbjct: 120 VIEKQ--KSIRLSQFALRELVNQTIFCTAPNDNNKMMAGELFEVIDSELKV--VALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ +  +  + A    ++VP K + EI +ILS+  D  + +  S + I    +   +  
Sbjct: 176 IAIRKKKLEGR-ADDVKVVVPGKTLNEISKILSTDADDMMNIYFSNNHILFEFDQTIVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           RLI+GE+     ++    +  +  N   +  ++DR +++
Sbjct: 235 RLIEGEYFKISQMLSSDYETRITANKKEMLGSIDRATLL 273


>gi|284988631|ref|YP_003407185.1| DNA polymerase III subunit beta [Geodermatophilus obscurus DSM
           43160]
 gi|284061876|gb|ADB72814.1| DNA polymerase III, beta subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 386

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/396 (22%), Positives = 171/396 (43%), Gaps = 23/396 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  + + +    R +  + ++PV   +LL+ +   L +  SG + E++    A 
Sbjct: 1   MKFRVAREVLADAVAWTARSLPPRPSVPVLAGILLEVDGSQLSV--SGFDYEVSAR--AE 56

Query: 61  VDV----CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           VDV     G + V   LL +I R L     +    E   G  ++IS G++ F L + P  
Sbjct: 57  VDVQATESGRVLVPGRLLAEITRALPP-HPVDLTAE---GPRLSISCGNARFSLPTLPVE 112

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++PS           + S V    V +   A   ++    L G+   I E+DL   A AT
Sbjct: 113 DYPSLPAMPSSAGV-VDSDVFAEAVGQVAVAAGRDDTLPMLTGVRLEI-EDDLVTLA-AT 169

Query: 177 DGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKD----SSVKVSLSESRIHLN 231
           D +RLAV E         + + ++VP + + +  + L+S      S    S  E  + L+
Sbjct: 170 DRYRLAVREFAWRPDTPGLTTAVLVPARTLADAAKTLTSGPEITLSLSSGSSGEGILGLS 229

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +    + RL+D EF  Y+ ++P  +     +       A  RV++++  R   ++   +
Sbjct: 230 GKDRQTTTRLLDAEFVKYRAIMPNESASNATLPVGLFTDAAKRVALVAE-RGTPLRCEFT 288

Query: 292 SDKLCMTVDNP-DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++ +      D G+A E  +V +   P+ I FN  +LL+ +  + +     D      
Sbjct: 289 PGQVTLRAGGTDDEGQAEERCDVEFEGEPLTIGFNPTFLLDGLAAVHTPRARMDFTSPLK 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
            +  S V     D ++ +    +  ++ Y++MP+R+
Sbjct: 349 PAVLSGVPEPATDDEAASRPAERPGSYRYLIMPVRL 384


>gi|227506186|ref|ZP_03936235.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC
           6940]
 gi|227197210|gb|EEI77258.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC
           6940]
          Length = 393

 Score = 77.4 bits (189), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 91/400 (22%), Positives = 176/400 (44%), Gaps = 36/400 (9%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I A VD  
Sbjct: 9   VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAAMVDEP 68

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELG---TEVNISHGDSNFYLQSFPESEFPST 121
           G I V+  LL DIV  L +       KE E+    ++V ++ G S F L   P  ++P  
Sbjct: 69  GRIAVAGKLLADIVASLPN-------KEVEMTQQDSKVLLTCGSSRFELPVIPLDDYPQL 121

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                V    +   +    + +   A   ++    L G+   I+   +++   ATD  RL
Sbjct: 122 PVLPEVTG-TVNPQLFVEAISQVASAAGKDDTLPMLTGVHMEIHGSHVEMT--ATDRFRL 178

Query: 182 AVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNI 232
           A+   +       + + ++VP K + +  R L +  +  V++++       +E    L+ 
Sbjct: 179 AMRTFEWEPTSPDVEAKLLVPAKTLQDTGRSLDTHLNIPVEIAVGTGENIGAEGLFGLHA 238

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           ++   + R++D +FPN   ++P ++     +    L++A+ RVS+++    Q +++  S 
Sbjct: 239 DNRETTTRMLDADFPNVSPLLPKTHTAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFSE 297

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL- 350
            ++ +     D GKA E++   +       I FN  YL + +  + +     D VVF   
Sbjct: 298 GQVTLAA-GADSGKADETLPCAFTGRDEFVIAFNPSYLKDGLAVVHT-----DRVVFGFT 351

Query: 351 DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           + S  ++ I   ++    ++D      + N  Y+LMP+R+
Sbjct: 352 EPSRPAIMIPEPEEMPLADEDGVFPTPETNFTYLLMPVRL 391


>gi|157736273|ref|YP_001488956.1| DNA polymerase III subunit beta [Arcobacter butzleri RM4018]
 gi|157698127|gb|ABV66287.1| DNA polymerase III, beta subunit [Arcobacter butzleri RM4018]
          Length = 356

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 61/257 (23%), Positives = 126/257 (49%), Gaps = 12/257 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++ +  ++      +E+K++  ++ H+ L+ N+  L IKA+  EI +   I   
Sbjct: 1   MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + V G  TV+   L  I+++L++   I     N L     I    S F L ++  +EFP
Sbjct: 61  TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNNLV----IKQNKSTFKLPTYDANEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E +    +++    N + +   A+     ++ LNG    I  +  K+  V+TD  
Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIKSQ--KINFVSTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++ ++ +        +I+P+KA+ EI ++   +    K+S   + + ++ +      
Sbjct: 175 RLALSFLENMNN--DEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229

Query: 240 RLIDGEFPNYQNVIPCS 256
           +LI+G+FP+Y+ +IP +
Sbjct: 230 KLINGKFPDYERIIPSN 246


>gi|317013918|gb|ADU81354.1| DNA polymerase III subunit beta [Helicobacter pylori Gambia94/24]
          Length = 374

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -AFFTKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|307699829|ref|ZP_07636880.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16]
 gi|307614867|gb|EFN94085.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16]
          Length = 381

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 176/394 (44%), Gaps = 26/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M++ + R  + E +  + R I ++  +PV   V + A    +E  +    +     + P 
Sbjct: 1   MELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +   G++ V   LL +  R L +  +++SF  E+     ++I+ G  +  L   PE ++
Sbjct: 61  ELITEGTVVVDGKLLSETARALPNKISEVSFKTEDNY---LHITCGSFHQQLLVMPEEDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   +   V   ++ + V  + + +   A + +E    L GI   I  E  KLC +ATD 
Sbjct: 118 PQLPQLPQVVG-QVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDR 174

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +R+A+ E+   A   ++   ++V  K + +  + ++S   S+ +++        +  LS 
Sbjct: 175 YRMALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSA 233

Query: 238 SVRLI-----DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
             RL      DG +P+ + + P   +    V  ++   A  RV+I+S+ +  Q + LS +
Sbjct: 234 GGRLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFT 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L     +     A +++ V  N   + + FN + L+E +       VVD+  V    
Sbjct: 294 QGTLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLS------VVDEPYVRLSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 V I G+ +++    D+ ++  Y++MP+R
Sbjct: 348 KDETKPVIITGQKEET---GDDSLDFQYLIMPIR 378


>gi|25026559|ref|NP_736613.1| DNA polymerase III subunit beta [Corynebacterium efficiens YS-314]
 gi|259508309|ref|ZP_05751209.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314]
 gi|23491838|dbj|BAC16813.1| putative DNA polymerase III beta subunit [Corynebacterium efficiens
           YS-314]
 gi|259164127|gb|EEW48681.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314]
          Length = 394

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 151/348 (43%), Gaps = 19/348 (5%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V R D++  +G   R +  K T PV   +L+ A+D  LE+     E+     + A V V 
Sbjct: 10  VAREDLVTSVGWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYEVSTRVRVSAEVAVP 69

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE- 123
           G I V+  +L +I+  L +   + F  +   G++V +S G ++F L S P  ++P     
Sbjct: 70  GRIAVAGKILSEIIGTLPN-KPVDFRLD---GSKVLVSCGSASFELPSIPLDDYPPLPSL 125

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            E   S  +   +    V +   A   ++    L G+   I+   + L   ATD  RLA+
Sbjct: 126 PERTGS--INPKLFTEAVTQVASAAGRDDSLPMLTGVNMEIHGNQISLA--ATDRFRLAL 181

Query: 184 AEVDI-VAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIES 234
              +   A       +++P K + E  R L +  +  + +++        E    +  ++
Sbjct: 182 RTFEWDPASSGIEAKLLIPAKTLLENARTLDTGLNEEIGIAVGTGEQVGREGLFGIRTDN 241

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + R++D +FPN Q ++P  +     V    L  AV RVS+++    Q + +  S  +
Sbjct: 242 RESTTRMLDADFPNIQPLLPKEHTAIASVEIAPLLDAVRRVSLVADRNAQII-MEFSDGQ 300

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           + ++    D G A E +   +    + I FN  YL + +  I +   V
Sbjct: 301 VILSAGGSDAGHAQEVLPCAFTGKDLKIAFNPGYLKDGLSVIPTSRAV 348


>gi|262183096|ref|ZP_06042517.1| DNA polymerase III subunit beta [Corynebacterium aurimucosum ATCC
           700975]
          Length = 393

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 38/401 (9%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD  
Sbjct: 9   VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVDEP 68

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPESEFPST 121
           G I V+  LL DIV  L +       KE E+  E N   +  G S F L   P  ++P  
Sbjct: 69  GRIAVAGKLLSDIVASLPN-------KEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQL 121

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                V    +   +    + +   A   ++    L G+   IN   +++   ATD  RL
Sbjct: 122 PVLPEVTG-TINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMT--ATDRFRL 178

Query: 182 AVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLN 231
           A+   E + V+   +   ++VP K + E  R L +  +  V++++       +E    L+
Sbjct: 179 AMRTFEWEPVSSDVQA-KLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLH 237

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++   + R++D +FPN   ++P ++     +    L++A+ RVS+++    Q +++  S
Sbjct: 238 ADNRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFS 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++ +     D G+A E++   +N      I FN  YL + +  + +     + VVF  
Sbjct: 297 EGEVTLAA-GADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHT-----NRVVFGF 350

Query: 351 -DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
            + S  ++ I   ++    N+D      + +  Y+LMP+R+
Sbjct: 351 TEPSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 391


>gi|227831832|ref|YP_002833539.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC
           700975]
 gi|227452848|gb|ACP31601.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC
           700975]
          Length = 444

 Score = 77.0 bits (188), Expect = 4e-12,   Method: Compositional matrix adjust.
 Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 38/401 (9%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD  
Sbjct: 60  VAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVDEP 119

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPESEFPST 121
           G I V+  LL DIV  L +       KE E+  E N   +  G S F L   P  ++P  
Sbjct: 120 GRIAVAGKLLSDIVASLPN-------KEIEMTQEDNKVLLICGSSRFELPLIPLDDYPQL 172

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                V    +   +    + +   A   ++    L G+   IN   +++   ATD  RL
Sbjct: 173 PVLPEVTG-TINPQLFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEMT--ATDRFRL 229

Query: 182 AVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLN 231
           A+   E + V+   +   ++VP K + E  R L +  +  V++++       +E    L+
Sbjct: 230 AMRTFEWEPVSSDVQA-KLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLH 288

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++   + R++D +FPN   ++P ++     +    L++A+ RVS+++    Q +++  S
Sbjct: 289 ADNRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLTDRNAQ-IRMEFS 347

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++ +     D G+A E++   +N      I FN  YL + +  + +     + VVF  
Sbjct: 348 EGEVTLAA-GADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHT-----NRVVFGF 401

Query: 351 -DSSNSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
            + S  ++ I   ++    N+D      + +  Y+LMP+R+
Sbjct: 402 TEPSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 442


>gi|15611519|ref|NP_223170.1| DNA polymerase III subunit beta [Helicobacter pylori J99]
 gi|11132657|sp|Q9ZLX4|DPO3B_HELPJ RecName: Full=DNA polymerase III subunit beta
 gi|4154988|gb|AAD06030.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
          Length = 374

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 159/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L G+    N++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++ +   S +SS     +KL+L  ++
Sbjct: 232 -AFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKEGIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|317009521|gb|ADU80101.1| DNA polymerase III subunit beta [Helicobacter pylori India7]
          Length = 374

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++++   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNTPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|160941460|ref|ZP_02088795.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435606|gb|EDP13373.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC
           BAA-613]
          Length = 372

 Score = 77.0 bits (188), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 185/394 (46%), Gaps = 40/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  I+  +    + +  K T+ +   +L+ A+    EIK +G ++E+       
Sbjct: 1   MKLRFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTN--EIKLTGNDMELGIETRVE 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D+   G I + A L  +I R+L  + A ++   +++  T   IS  +S F +Q     E
Sbjct: 59  GDILEHGKIALDAKLFSEITRRLSSENASVTIESDDKFNT--TISCENSVFNIQGRDGEE 116

Query: 118 F---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           F   P  ++++Y+    L+   LK ++++T F+++  +    + G  F +NE  LK+  V
Sbjct: 117 FAYLPYIEKDKYIC---LSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--V 171

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIE 233
           + DGHR+++ +V +         +IVP K + E+ +IL    +  V +  S + I    +
Sbjct: 172 SLDGHRISIRKVRLKDHYED-TKVIVPGKTLSEVSKILGGDNEKEVLIYFSTNHILFEFD 230

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSL 290
           +  +  RLI+GE+     ++    + ++ VN       ++R +I+  +R    K   +++
Sbjct: 231 NTIVVSRLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATIL--IRENDKKPLIINI 288

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FR 349
             + + + + N   G     + ++     + I FN K+L++ +       V+DDE +   
Sbjct: 289 GDNSMELKL-NSSFGSMNADLMIHKTGKDIMIGFNPKFLIDAL------RVIDDEEINIY 341

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           + +  S  FI          KD + N  Y+++P+
Sbjct: 342 MMNPKSPCFI----------KDEEENYIYLILPV 365


>gi|295129531|ref|YP_003580194.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137]
 gi|291376118|gb|ADD99972.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137]
          Length = 414

 Score = 76.6 bits (187), Expect = 5e-12,   Method: Compositional matrix adjust.
 Identities = 95/403 (23%), Positives = 177/403 (43%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 29  VEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 88

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           VD  G   VS  LL DI   L +   QI+         ++++  G + F LQ+ P  E+P
Sbjct: 89  VDEPGESLVSGKLLADIACSLPNKPVQITTDP-----AKMDLVCGSARFTLQALPVDEYP 143

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +
Sbjct: 144 DLPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRY 200

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           R+A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +
Sbjct: 201 RMALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGD 259

Query: 234 SLS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
             +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ 
Sbjct: 260 GANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVAE-RNTPLRMV 318

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMD-----ICFNYKYLLEIIDNISSDEVVD 343
           ++ D + ++    D  +A E++  V  N    +       FN  YL + +  + +     
Sbjct: 319 INDDSVALSAATGDQAQASEAIEAVVTNHVDGEPTITAAGFNPHYLSDALGALDT----- 373

Query: 344 DEVVFRLDSSNSSVFIRG-KDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G  D D K   D +    +V+M MR+
Sbjct: 374 PYVHFSFTAPGKPCLVTGLNDFDGKPETDYR----HVIMLMRL 412


>gi|148927259|ref|ZP_01810830.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1]
 gi|147887345|gb|EDK72798.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1]
          Length = 202

 Score = 76.6 bits (187), Expect = 6e-12,   Method: Compositional matrix adjust.
 Identities = 59/211 (27%), Positives = 104/211 (49%), Gaps = 11/211 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV + ++ + L    R+   K  +P+  ++LL+ ++  L + A+  EI IT  I A 
Sbjct: 1   MKLTVTQENLTKALNGVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP- 119
           V   G+ITV A L+ + +  L  G  +    E   G  ++I+ G  +  +      EFP 
Sbjct: 61  VAKNGAITVPARLMAEFISNLPKG-NVELSVE---GAHLHIAAGAYSSTINGMEAEEFPE 116

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  E     +E+ + V+K  V +T    +++  R +L G++ H  E DL     ATDG
Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGDLYFA--ATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209
           +RL+  ++  + +  K    IVP   + ++L
Sbjct: 175 YRLSERKIGAMKEDLKA---IVPASTLQDVL 202


>gi|210134703|ref|YP_002301142.1| DNA polymerase III subunit beta [Helicobacter pylori P12]
 gi|210132671|gb|ACJ07662.1| DNA polymerase III beta subunit [Helicobacter pylori P12]
          Length = 374

 Score = 76.3 bits (186), Expect = 7e-12,   Method: Compositional matrix adjust.
 Identities = 88/395 (22%), Positives = 180/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + +      + V R 
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLRC 341

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 342 NEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|109947376|ref|YP_664604.1| DNA polymerase III subunit beta [Helicobacter acinonychis str.
           Sheeba]
 gi|109714597|emb|CAJ99605.1| DNA polymerase III, beta chain [Helicobacter acinonychis str.
           Sheeba]
          Length = 374

 Score = 76.3 bits (186), Expect = 8e-12,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 159/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D       KE+ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNITLETKEDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L G+    ++    L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLENISVNSTEEYISCILPKRALLEILKLFYESFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +N    ++++   S +S      +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYASSFTLNKEGFKESIKLSSSLSPT----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +  +   E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSIEIEKDLEIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|15645127|ref|NP_207297.1| DNA polymerase III subunit beta [Helicobacter pylori 26695]
 gi|3913505|sp|O25242|DPO3B_HELPY RecName: Full=DNA polymerase III subunit beta
 gi|2313610|gb|AAD07565.1| DNA polymerase III beta-subunit (dnaN) [Helicobacter pylori 26695]
          Length = 374

 Score = 76.3 bits (186), Expect = 9e-12,   Method: Compositional matrix adjust.
 Identities = 87/395 (22%), Positives = 181/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLA----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIDPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+ +H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENEMH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + +      + V R 
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLRC 341

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 342 NEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|307592396|ref|YP_003899987.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822]
 gi|306986041|gb|ADN17921.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822]
          Length = 497

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 82/363 (22%), Positives = 167/363 (46%), Gaps = 24/363 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGLLEIKASGPEIEITGAIP 58
           ++I+ +++ +LE +      I      P+   +LL+       L++++   E   +  I 
Sbjct: 103 IQISTDKNALLEAIELVKAGISNNPAYPILGMILLELETEKQRLKLRSYNYEFGFSTEIE 162

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-----VNISHGDSNFY-LQS 112
           A +   GSI + A L Y I+RK   G  +   + N+  T+     +++     NF+ ++ 
Sbjct: 163 AGITGKGSIALPAALFYAILRKFPMGECLLTLQTNDEATDEIVAKLSLKEQPDNFFEIRG 222

Query: 113 FPES---EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI----N 165
            P +   E+P+      +  F  +   L ++   + FA + EE +  L G  F +    +
Sbjct: 223 LPGNQYPEYPTVSPTTVMACF--SGDFLISIFNGSLFAASNEETKRVLTGTHFLLSYNPD 280

Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           ++   L    TDGHR+  +E     Q  + +  S+ +P KA+ E+ + L   D  +K+ L
Sbjct: 281 KKLTTLKTFTTDGHRMVFSEGMTKDQSTLDEPVSLTIPVKALRELQKHLLPSD-QIKLYL 339

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDRVSIMSS 280
           SE+          +  R I+G +P+ +NVI      +          L+  ++R  I+ +
Sbjct: 340 SENLCRFQWGLNELVSRTIEGAYPDCENVINEILSQSSHSFTCQRGQLQDTLERFLILCT 399

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSD 339
              + +K+ + S+K  +++   D+ +  ES+ +  +   P+ + +N  YLLEII  I +D
Sbjct: 400 KSERVMKMKIESEKDYLSISQKDVARGQESIPIENFTGKPLKLLYNVNYLLEIIKAIPND 459

Query: 340 EVV 342
            ++
Sbjct: 460 TII 462


>gi|237728525|ref|ZP_04559006.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2]
 gi|226910003|gb|EEH95921.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2]
          Length = 382

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 67/287 (23%), Positives = 128/287 (44%), Gaps = 39/287 (13%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E+ YS    + +L  +++R   A A  ++R+Y+NG++  I  ++ +  AVATDGHR+AV+
Sbjct: 109 EHNYSVYFPTQMLSQIIKRVSHAAAQNDVRHYMNGVYLGI--DNGQFIAVATDGHRMAVS 166

Query: 185 EVDI-----VAQIAKMPS-----------IIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             DI     V+   + P+           +I+P   +  + +ILS      K+  S   +
Sbjct: 167 SHDIDFSDDVSDEIQYPTAPTSISNTNAGVILPNGVLPVLHKILSGSQGQFKIDYSNRNL 226

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIM----SSVR 282
              + S ++   L+DG +P+++ V      N +  +VN + L  A+ R + +    S   
Sbjct: 227 AFTLGSHTVISNLVDGRYPDWKRVASTVAKNTELFKVNPSELTTALKRATPLLKEGSPNN 286

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN----ECPMDICFNYKYLLEIIDNISS 338
                +S   + L +     +     E M++       E  +DI  N  YLLE + ++ +
Sbjct: 287 TSVCVMSFKDNALQLKSPGTNAISCKEVMDIAKEAGKPEAMVDIGMNADYLLESLASLGA 346

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                + V   L  + + + I         NK    N + ++MP+R+
Sbjct: 347 CSEEGEAVQIALRDTTTGILI-------SVNK----NIYDIIMPVRV 382


>gi|269217834|ref|ZP_06161688.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212769|gb|EEZ79109.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 377

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 87/396 (21%), Positives = 176/396 (44%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK+ VE     + +    R I  + ++PV   + ++A+ DG + + +  P+I     I A
Sbjct: 1   MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHAVIEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +VD  G+  V   LL D  R L +       K    G ++ +  G S+  +QS P  ++P
Sbjct: 61  AVDDPGTTLVHGRLLSDFARALPNKPIDMELK----GAKLEVVCGSSHISMQSMPLEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S      V S  +  ++ +  V +   A ++++    L  +   I  + + L  +ATD +
Sbjct: 117 SAPPMPEV-SGVVDGALWQETVAQVVTAASSDDTLPLLVSVCIEIEGKTMSL--MATDRY 173

Query: 180 RLAVAEVD-----------IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           RLAV ++            I+ + +++  I    KA+G + ++  + D+S +  +    I
Sbjct: 174 RLAVRDLTWEPANEDASHRILVRASRLSDIA---KALGSVGKVELAIDNSGRTGM----I 226

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
             +        RLIDGE+P  +N+ P        +    +  A+ R  ++   +  AV+L
Sbjct: 227 GFSAAGRHNVARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVVE-KNSAVRL 285

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           S S  ++ +     D  +  E++    +   + + FN  +L E +   S+  V    + F
Sbjct: 286 SFSEGQVILEAGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSAPYV---RLSF 342

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +S  +V     + D +++++ ++    +LMP+R
Sbjct: 343 -TSASKPAVLTAQPEIDGEDDQEFRL----LLMPIR 373


>gi|307591377|ref|YP_003900176.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822]
 gi|306986231|gb|ADN18110.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822]
          Length = 455

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 93/446 (20%), Positives = 198/446 (44%), Gaps = 81/446 (18%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV ++ I E L     I+  K + P+  +VL++A D  L +      + +T + P S
Sbjct: 1   MEFTVSQTTISEHLAQIKTILPPKPSYPILSNVLMKAKDQQLILTTFDSSLGLTTSFPVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF---------FKENELGTEVNISHGDSNFY-L 110
           ++  GSI V+  LL  ++ KL +  +++F           EN L   + I   +++ Y L
Sbjct: 61  IEEEGSICVNGKLLVGLINKL-NATELTFKLETTEDFEEDENPL---ILIVQAENSIYRL 116

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           Q    +++P     E + S  L S  L + +     + AT+E +  L G+ F  +   L+
Sbjct: 117 QGIESNQYPELPILETLLSVTLPSHSLLSALIPVLRSYATDETKQILRGVHFLFSSSKLE 176

Query: 171 LCAVATDGHRLAVAE--VDIVAQIAKMPS--IIVPRKAVGEILRIL------------SS 214
           L  ++TDGHRL++++  +D +A I ++ S  I +P     +++++L            S 
Sbjct: 177 L--ISTDGHRLSMSKLSLDDLAGIDEIESEGITIPGDTCQQLVKLLRGFKEDVEQPSQSP 234

Query: 215 KD---------------------------------SSVKVSLSESRIHLNIESLSMSV-R 240
           ++                                 S+VK+S    ++   + +  M + R
Sbjct: 235 QEDECGTRSAPQSESVQGEDEPSPTIDNNFSEPVCSTVKISWDNKQVQFELGAHQMMISR 294

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           L+ G +PN   ++P      +      +++A++R++I++  + +  ++ S    ++ +  
Sbjct: 295 LLQGTYPNAHQLLPSEYPNSINFQVLEMKRAINRLNILNPKKNVLVLECSAQRQQIKLYW 354

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + D  + IE++     E  + I FN KY  + +  +  +E+  + +    D   +S  +
Sbjct: 355 LSSDHHQGIENIPAVV-ERDLTIAFNSKYFHDAVLALPGNELKFEAI----DPDQASRLV 409

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + +   +AF +LMP+++
Sbjct: 410 ---------SLEPDCSAFVLLMPVKV 426


>gi|291539807|emb|CBL12918.1| DNA polymerase III, beta subunit [Roseburia intestinalis XB6B4]
          Length = 344

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 68/312 (21%), Positives = 153/312 (49%), Gaps = 11/312 (3%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           +L+ A+   +++ A+  E+ I   I   +   G I + A +  +IVRKL D + ++   +
Sbjct: 7   ILIDASANEIKLTANDMELGIETKIEGEIAERGVIALDAKIFSEIVRKLPD-SDVTIETD 65

Query: 93  NELGTEVNISHGDSNFYLQSFPE-SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATE 151
               T +       N   +S  + S  P  +  E +    ++   LK ++ +T F++A  
Sbjct: 66  ASFKTTITCEKAKFNIVGKSGDDFSYIPYIERNEPIV---MSQFTLKEVIRQTIFSIADN 122

Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211
           +    + G  F I E DLK+  V+ DGHR+++  +++    +    ++VP K + E+ +I
Sbjct: 123 DNNKLMTGELFEIEENDLKV--VSLDGHRISIRNIELKNNYSH-KKVVVPGKTLQEVSKI 179

Query: 212 L-SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           L  S +  V + L+++ I    E+ ++  RLI+GE+   + ++    + ++++N   L  
Sbjct: 180 LPGSAEDEVCIFLTDNHIVFEFENTTVVSRLIEGEYFKIEQMLSSDYETKVKINKRELLD 239

Query: 271 AVDRVSIM-SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
            +DR +++      + + ++++   + + + N  +G   E +++      + I FN K+ 
Sbjct: 240 CIDRATLLVKEGDKKPIIMNITDGTMELKI-NSFIGSMNEDIDIAKEGKDILIGFNPKFF 298

Query: 330 LEIIDNISSDEV 341
           ++ +  I  +EV
Sbjct: 299 IDALRVIDEEEV 310


>gi|218442573|ref|YP_002380894.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424]
 gi|218175344|gb|ACK74075.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424]
          Length = 479

 Score = 75.9 bits (185), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/350 (23%), Positives = 167/350 (47%), Gaps = 27/350 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ +SD+   L     II  + T P+  + +LQA +G L I A    + +  ++ A 
Sbjct: 1   MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118
           V   G+ITV A LL  ++  L + +      EN  E    + I   +S + ++     E+
Sbjct: 61  VSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDEY 120

Query: 119 ---PSTKEEEYVYSFELASSVLKNLVERTHFAMAT---EEIRYYLNGIFFHINEEDLKLC 172
              PS  E E +      S  +K  +E  +  + T   +E +  L G+  H+  ++ KL 
Sbjct: 121 PDIPSLDESETI------SIKMKTFIELLNPVLPTYSEDETKQVLVGV--HLVGKNNKLE 172

Query: 173 AVATDGHRLAVAEVDIVAQIAKMP------SIIVPRKAVGEILRILSSKDSS--VKVSLS 224
              TDGHRL+V    ++   ++ P       + +  K +  + + +   D +  +K+S +
Sbjct: 173 LATTDGHRLSVTGA-LLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWN 231

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-I 283
           +  +  N+ S  ++ RL+ G +PNY  +IP     +L    + + +AV R+ +++  + I
Sbjct: 232 KELVKFNLTSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDKNI 291

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
             ++ + +   L +T  + ++G+  E+++  +    + +  N KYL+E I
Sbjct: 292 IVIEANKNLQTLTVTTFDTEVGQGSETIHAEF-ALNLKMGVNGKYLIEAI 340


>gi|157164122|ref|YP_001465927.1| DNA polymerase III subunit beta [Campylobacter concisus 13826]
 gi|112801712|gb|EAT99056.1| DNA polymerase III, beta subunit [Campylobacter concisus 13826]
          Length = 355

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 66/302 (21%), Positives = 145/302 (48%), Gaps = 24/302 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + ++ +  ++ +    +E+++   ++ H+ + A DG+L IKA+  EI +   + ++
Sbjct: 1   MKVLINKNMLESIVTNTNPYLEKRDLSAITSHIYISAKDGVLNIKATDHEIGLAYKL-SN 59

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN---ISHGDSNFYLQSFPE 115
           V +   G  T +   L DI++ L+D       +E  L T  N   I   +S + L  +  
Sbjct: 60  VKIVDEGYATANGKKLLDIIKSLKD-------EEVTLETVNNYLYIKQKNSKYKLPMYKF 112

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            +FP     E    F + + +L   +++    + +   ++ LNG    I +  + +  V 
Sbjct: 113 EDFPEFPTIEGKSKFNIDAIMLGRSLKKILPCIDSNNPKFELNGALLDIKQNYINI--VG 170

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLAV +     + +   S+I+P+KA+ EI ++   K   +++   E+ +    ++ 
Sbjct: 171 TDTKRLAVFK--FANEASNEFSLIIPKKAINEIQKLFFDK---IEIYYDENVLIAQSQNF 225

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
               +LI+G+FP+Y+ VIP        ++   + + +  +S++S      +K++ S + +
Sbjct: 226 EFFTKLINGKFPDYERVIPKDIAIRFELSRDKMVEGIKTISMLSD----QMKITFSKENI 281

Query: 296 CM 297
             
Sbjct: 282 TF 283


>gi|168702516|ref|ZP_02734793.1| DNA polymerase III, beta chain [Gemmata obscuriglobus UQM 2246]
          Length = 375

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 83/358 (23%), Positives = 164/358 (45%), Gaps = 27/358 (7%)

Query: 1   MKITVERSDILELLGHACRIIE----RKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA 56
           MK+T +R  +L     AC++++    ++ T PV  ++   A D  + + A   E+ I   
Sbjct: 1   MKVTCQRDSLL----TACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYE 56

Query: 57  IPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH-GDSNFYLQSFP 114
           +   +V   GS  +    L  I+R+  D  +IS     + G E  ++      F + S  
Sbjct: 57  LRGITVARAGSCILPITELVKILRESSD-PEISL----DAGKEAVVAKTSGGKFEMPSLD 111

Query: 115 ESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKL 171
            +EFP   E ++     E+ + VL+ ++ RT FA   ++   R+ L G+ +  + ++ +L
Sbjct: 112 VNEFPDIPEFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARL 171

Query: 172 CAVATDGHRLAV--AEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             VATD  RLAV   E  +   +  + +I +VP KAV  + + L+    +V+V L  +  
Sbjct: 172 --VATDTKRLAVCKGEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDA 229

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSSVRIQA 285
               E  ++   L+ G+FP Y+++I  +     +++ +        V + +IM+      
Sbjct: 230 LFKTERATIYTSLVQGKFPPYRDIIGKTTKEATQKVPLPVQGFLSRVRQAAIMTDDESMR 289

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVV 342
           V ++     + M       G +  ++ +   + P  +I F+  YL+E +  I ++  V
Sbjct: 290 VDMTFDPGSVVMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENEPTV 347


>gi|78355049|ref|YP_386498.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217454|gb|ABB36803.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 384

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 80/394 (20%), Positives = 172/394 (43%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + D+++ L  A  II  K        + L+A  G++ + ++   IE  G+  A 
Sbjct: 1   MYLKVFKEDVIDGLQKAANIIPAKTGAAYLRSIWLKAEAGMVHVLSTDSNIEFRGSYKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V      D++RKL  G +I+   + + GT + I  G   + L +   + F +
Sbjct: 61  VTEEGLAGVQGRAFVDLIRKLPAG-EITLHLDPKTGT-LGIEQGRRKYTLPTNDTAWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S   +   L+ L+++  F ++ E+    +  +      +D  + A   +GH+
Sbjct: 119 FSDYPESGSVFWSGDFLQELIDKLSFCISDEDTMEAIACMSMK-PRQDNAIEACGLNGHQ 177

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI----ES 234
            A+     D +  +     I+V +K + E+ + L + +  +++++   R+        E+
Sbjct: 178 FAMQRFLNDDIHALLPAEGILVQKKYLMELKKWLGADE--IELNIDNKRLFFRTGDKRET 235

Query: 235 LSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            S+ +     ++P+Y + +      +   L VN  ++  A+DRV I ++   +     L 
Sbjct: 236 FSLPLSYY--QYPDYTSFVSKLSTPDAGALEVNRKDMMAALDRVLIFNTDNNRCTYFDLE 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + ++ ++    ++G A ES+   Y+     I F  + L+EI+++  S     D + F L 
Sbjct: 294 AGEVSLSSQGQEVGSASESLEGTYDGSLKRIAFPTRNLIEIMNHYQS-----DSMRFTLT 348

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +     + G         +N  +   ++MPM+I
Sbjct: 349 GTEGPCGLTG---------ENDPDYLVIVMPMKI 373


>gi|296127871|ref|YP_003635121.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109]
 gi|296019686|gb|ADG72922.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109]
          Length = 376

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 84/390 (21%), Positives = 173/390 (44%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+  V+R  + + +    R +  +  +PV   V ++A+  G +++ +   E+     +PA
Sbjct: 1   MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADTTGTVQLSSFDYEVSARAQLPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VS  LL +I R L     +    +   GT+V ++ G S F L + P  ++P
Sbjct: 61  DVSEPGTVLVSGRLLAEISRALP-AKPVDVVLD---GTKVQVTCGASRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S      V +  +    L + V +   A + ++    L G+   I  E + L  +ATD +
Sbjct: 117 SLPVMPEV-TGTVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGERVTL--LATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           RLA+ E+        + ++ + R + + +  + L     SV V+LS+      I      
Sbjct: 174 RLALREMTWKPASPTVEAVALVRARTLSDAAKSLGGA-GSVSVALSDGGGVDLIGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L+DG++P  + + P        V+   L +A  RV++++  R   ++LS S  +
Sbjct: 233 RQTTSLLVDGDYPPVRRLFPDETPIHAIVHRQALAEAAKRVALVAE-RNTPIRLSFSDGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++        + + FN ++L + +  +       D    R+  ++
Sbjct: 292 VVLDAGQGDDAQASEALEASLVGDDISVAFNPQFLADGLGAL-------DTTFVRMSFTH 344

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +  +    ++S    D K +  Y+L+P+R
Sbjct: 345 PNKPVEFTGQESLEGDDRK-DYRYLLVPIR 373


>gi|238915978|ref|YP_002929495.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238871338|gb|ACR71048.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 367

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/387 (20%), Positives = 181/387 (46%), Gaps = 28/387 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +G   + +  + T+ +   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKLVFTKSNLNKAVGIVMKAVPTRTTMNILECILIDATTNEIKFTGNDMELGIETIVEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFP 119
           +   G + + A L  +IVRKL D   I+   ++     +       N   +S  + S  P
Sbjct: 61  IIEKGKVAIDAKLFSEIVRKLPDN-DITLTTDSNNNALITCEKSKFNIAGKSGDDFSYLP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  +++ +    L+   LK ++ +T F++A  +    + G  F +NE  LK+  V  DGH
Sbjct: 120 AIIKDKMI---TLSQFQLKEVINQTIFSIAINDNNKMMTGELFEVNEGTLKV--VGLDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           R+A+  + +  + A    +++P K + EI +IL++  +S V +  + + +    +   + 
Sbjct: 175 RIAIRNIKLEGR-ADDVRVVIPGKTLQEISKILNADAESFVNIYFTNNHVLFEFDQTHVV 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCM 297
            RLI+G++     ++    + ++ +N      ++DR +++      + + +++ +  L +
Sbjct: 234 SRLIEGDYFKISQMLSNDYETKVSINKKEFLDSIDRANLLIREGDKKPIIINILNGLLQV 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE-VVFRLDSSNSS 356
            V N  +G   E +++      + I FN K+L++ +       V+DDE V   L +  S 
Sbjct: 294 NV-NSAIGALNEDIDIDKEGKDIMIGFNPKFLMDAL------RVIDDENVTIYLVNHKSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            FIR K++          N  Y+++P+
Sbjct: 347 CFIRDKEE----------NYIYLILPV 363


>gi|308184281|ref|YP_003928414.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180]
 gi|308060201|gb|ADO02097.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180]
          Length = 374

 Score = 75.5 bits (184), Expect = 1e-11,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L G+    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ V+     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSS----TIKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|108562901|ref|YP_627217.1| DNA polymerase III subunit beta [Helicobacter pylori HPAG1]
 gi|107836674|gb|ABF84543.1| DNA polymerase III beta-subunit [Helicobacter pylori HPAG1]
          Length = 374

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 81/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|256370826|ref|YP_003108650.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007410|gb|ACU52977.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 366

 Score = 75.1 bits (183), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 77/351 (21%), Positives = 159/351 (45%), Gaps = 38/351 (10%)

Query: 48  GPEIEITG--------AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV 99
           G E+E+ G        ++  ++   GS    A L  D+VR +    Q+    E+     V
Sbjct: 36  GGELEVEGRESDLAIRSVLGAMGTEGSFQTPASLAVDLVRTMPSD-QVEVVVED---ASV 91

Query: 100 NISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-N 158
            +  G +   LQ  P  E P   E     S  + ++ L   + +   A A ++ R  + +
Sbjct: 92  VLRSGRAEVSLQLLPTLELPGIGEG-TTPSATVPAAALAQGIRQVAVAAARDDGRDLIYS 150

Query: 159 GIFFHINEEDLKLCAVATDGHRLA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215
            + F    + L+L  VATDG RLA   +A + +    A+   +++P +AV E+ R+++  
Sbjct: 151 SMLFSSTNDGLRL--VATDGTRLALRDIANLSVAGSEAR--DVVIPTRAVRELERLVTGA 206

Query: 216 D-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
               + V + E      + + +++ RL+D  F +Y+ ++  +  K+L ++  +L  A+ R
Sbjct: 207 GVDEIHVGIGERDAVFVVGTTTLATRLVDEPFRDYRRLVEATYPKKLLLDRLSLVDAMRR 266

Query: 275 VSIMS--SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           +  M+  +    +++++++     ++V  P +G+  E ++  +N+    I F+   L + 
Sbjct: 267 LRRMAKEARNSSSIQMNMTPTACELSVRIPSVGQVHEVLDANFNDAEFTINFDPDMLADG 326

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +D +  D       V RL+      FI        ++ D +    Y+LMP+
Sbjct: 327 VDGVEGD-------VIRLE------FIEANRAACVSSADTR-EYLYILMPI 363


>gi|269977743|ref|ZP_06184703.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1]
 gi|269934047|gb|EEZ90621.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1]
          Length = 388

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 26/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           +++ + R  + E +  + R I ++  +PV   V + A    +E  +    +     + P 
Sbjct: 8   VELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPL 67

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +   G++ V   LL +  R L +  +++SF  E+     ++I+ G  +  L   PE ++
Sbjct: 68  ELITEGTVVVDGKLLSETARALPNKISEVSFKTEDNY---LHITCGSFHQQLLVMPEEDY 124

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   +   V   ++ + V  + + +   A + +E    L GI   I  E  KLC +ATD 
Sbjct: 125 PQLPQLPQVVG-QVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDR 181

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +R+A+ E+   A   ++   ++V  K + +  + ++S   S+ +++        +  LS 
Sbjct: 182 YRMALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSA 240

Query: 238 SVRLI-----DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
             RL      DG +P+ + + P   +    V  ++   A  RV+I+S+ +  Q + LS +
Sbjct: 241 GGRLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFT 300

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
              L     +     A +++ V  N   + + FN + L+E +       VVD+  V    
Sbjct: 301 QGTLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLS------VVDEPYVRLSF 354

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 V I G+ +++    D+ ++  Y++MP+R
Sbjct: 355 KDETKPVIITGQKEET---GDDSLDFQYLIMPIR 385


>gi|217032915|ref|ZP_03438391.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128]
 gi|298736180|ref|YP_003728706.1| DNA polymerase III subunit beta [Helicobacter pylori B8]
 gi|216945364|gb|EEC24034.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128]
 gi|298355370|emb|CBI66242.1| DNA polymerase III, beta chain [Helicobacter pylori B8]
          Length = 374

 Score = 74.7 bits (182), Expect = 2e-11,   Method: Compositional matrix adjust.
 Identities = 82/352 (23%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|196048286|ref|ZP_03115463.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|196021023|gb|EDX59753.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
          Length = 370

 Score = 74.7 bits (182), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 1   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 235 SIIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 292 SIHLKPQNSQVGTA--SVEILCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|7716426|gb|AAF68381.1|AF235031_1 putative DNA-polymerase III, beta chain [Streptomyces coelicolor
           A3(2)]
          Length = 366

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 70/311 (22%), Positives = 131/311 (42%), Gaps = 22/311 (7%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G   VS  LL DIV  ++    +        G  + +  G + F L + P  E+P+  E 
Sbjct: 64  GRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTLPLDEYPALPEP 118

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
             +    L        V +   A++ EE    L GI  H + E   L   ATD      A
Sbjct: 119 GTITG-TLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTLYATDA---TFA 174

Query: 185 EVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSMSV 239
              +  + A +P  S ++P +A+       ++ D++V ++L         L  +  + ++
Sbjct: 175 VRTLSWKDANLPDTSAVIPGRALRRA--KATADDTTVDLALPTGDAGLFTLRSDLTTTAI 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-LCMT 298
           R ++GE P Y  + P        V    L+ A  RV+++S+ +   +KL+ ++D  L + 
Sbjct: 233 RALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTADSTLVLE 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D  +A++S++       + I FN  +LL+ ++ +     + + V F   S      
Sbjct: 293 GGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNAL-----MAESVQFDFISPTKPAV 347

Query: 359 IRGKDKDSKNN 369
           +R  D D + +
Sbjct: 348 LRAHDGDDQAS 358


>gi|257469639|ref|ZP_05633731.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185]
 gi|317063875|ref|ZP_07928360.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
 gi|313689551|gb|EFS26386.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
          Length = 363

 Score = 74.3 bits (181), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 89/390 (22%), Positives = 167/390 (42%), Gaps = 34/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R +++ +L     I++     P+   + ++A + L+    +  E++    + A 
Sbjct: 1   MKFSIKREELISILSEYTNILKDNPIKPIVSGLQIKAENNLITFVGTNLEVDHIRKVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +   LL + + KL D   I F   N       I+   + F +    E  FP 
Sbjct: 61  VKEEGSLVLKPFLLLEYI-KLLDEEYIEFILNNGF-----ITVHQAEFSI--LEEGTFPV 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             E   +    +    L  L+E++ FA  +  + I+     + F +NE +L    V+TD 
Sbjct: 113 ITETTPIKLLAITGGELVKLLEKSKFAASLTNDNIQINCVRVIFKLNEINL----VSTDS 168

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL   + D    + K   I +P   +  I ++L   +  V +  S   + L  E+   S
Sbjct: 169 YRLLYMKADKNCHVEK--EISIPMDTINVICKLLKDSEKEVTIGFSGENVILTWENAYFS 226

Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
            + I   FP+++ ++   S  K +  N   L+ A+ RV  ++   + A   ++   K   
Sbjct: 227 SKTIALPFPDFKGILANNSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKT 286

Query: 298 TVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            + N   GKA   + +N+           N K+L E IDNIS + V+         S +S
Sbjct: 287 LLINAFSGKAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVIK-------GSGSS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S+F        +  +  K +  Y+LMP+ +
Sbjct: 340 SMF--------EITETGKEDYRYILMPLAL 361


>gi|319440151|ref|ZP_07989307.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM
           44702]
          Length = 262

 Score = 73.9 bits (180), Expect = 3e-11,   Method: Compositional matrix adjust.
 Identities = 65/262 (24%), Positives = 117/262 (44%), Gaps = 18/262 (6%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
           +   ++ +   A   ++    L GI   I+ E + L A  TD  RLAV  VD     A +
Sbjct: 5   LFAEVISQVAVAAGRDDTLPMLTGIRMEIDGEHVVLAA--TDRFRLAVRTVDWAPARADI 62

Query: 196 PS-IIVPRKAVGEILRILSSKDSSVKVSL------SESRI-HLNIESLSMSVRLIDGEFP 247
            + +++P + + +  R L S    V+++L        SR+  +  +    + RLID +FP
Sbjct: 63  SAELLIPARTLADTARSLDSNGEPVEIALDTDAASGGSRLLGIATDDRRSTTRLIDADFP 122

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
            ++ ++P  N     V  T L  A+ RVS+++    Q ++++     L ++    D+G A
Sbjct: 123 KFRPLLPKQNTALATVEITPLLDAIRRVSLVTEGNSQ-IRMAFEEGGLTISGGGSDIGVA 181

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            E +   +   P+ I FN  YL + +  I +D VV     F   S  + +F   +D    
Sbjct: 182 EEQLPCAFVGEPLVIAFNPGYLKDGLGAIHTDRVV---FGFTQPSRPAILFPEPEDLPEA 238

Query: 368 NN----KDNKVNAFYVLMPMRI 385
                    +    Y+LMP+R+
Sbjct: 239 GPDGAFPTPETPFTYLLMPVRL 260


>gi|134122662|dbj|BAF49636.1| DnaN [Microcystis viridis NIES-102]
          Length = 181

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 40/149 (26%), Positives = 88/149 (59%), Gaps = 4/149 (2%)

Query: 197 SIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
           ++ +P +A+ E+ R++++K +  ++ + + +S++   +    ++ R ++G +P Y  +IP
Sbjct: 1   NVTIPARALRELERMMATKQNIETITLHVDDSQVIFEMGEQRLTSRKLEGAYPTYNQLIP 60

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMN 312
            S D+ L ++   L + ++ V+++S  +   VK SL S  D+L + V++PD+G A ESM 
Sbjct: 61  KSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMA 120

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEV 341
                   DI FN KYL++ +  + ++++
Sbjct: 121 AEIQGESGDIAFNVKYLMDGLKALPNNDI 149


>gi|160902631|ref|YP_001568212.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95]
 gi|160360275|gb|ABX31889.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95]
          Length = 370

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 65/247 (26%), Positives = 123/247 (49%), Gaps = 8/247 (3%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE--IRYY 156
           + IS G+S F L +    EFPS   E    S  L  +++ N++++  F    +   +   
Sbjct: 95  LKISGGNSVFRLPTMDPDEFPSLAFEVTGNSILLDRTIITNMIDKVVFCALKDSSSLSRN 154

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-K 215
           LN +++   +    L  VATD +RLA++E  +       P  ++  K++ E+  ILSS K
Sbjct: 155 LNAVYWDFRQGGF-LNLVATDSYRLALSESKLEDDNILSP-FLLSLKSMDELKTILSSAK 212

Query: 216 DSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
              V+V  S S+I  + E  +  +   +ID EFPNY ++IP S   +++   +     + 
Sbjct: 213 TEKVRVVQSGSQILFDFEEDNNQLIYNVIDAEFPNYLSIIPESFITKIKAKTSEFLAIMK 272

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           R+SI +    +   L++   ++     +PD+G+A E ++V      ++I ++ +Y  E +
Sbjct: 273 RMSITAGSE-EYTLLNIEDGRIQFYASSPDVGEAKEEIDVEQEGKNIEIAYSPRYFREAL 331

Query: 334 DNISSDE 340
           + I + E
Sbjct: 332 ERIETVE 338


>gi|50364817|ref|YP_053242.1| DNA polymerase III, beta chain [Mesoplasma florum L1]
 gi|50363373|gb|AAT75358.1| DNA polymerase III, beta chain [Mesoplasma florum L1]
          Length = 373

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 88/374 (23%), Positives = 160/374 (42%), Gaps = 23/374 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ +S +L  L  A ++IE KN  P    V ++ +   L I +S         +   
Sbjct: 1   MRLSINKSVLLNELTKASKLIELKNVNPALQGVYMEVSFDKLVIVSSNTSTSFKAELNNE 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                ++  G I V    + +++RKL  +   +S F ENEL     I    SN  +    
Sbjct: 61  NSDLIIEQPGRILVKPKFILELLRKLDSEFVTLSTFAENEL----EIITEKSNLKVSILN 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP     E      + S   K+ + +T  ++     +  L G+   I  +D K+  V
Sbjct: 117 VEEFPLIGFVENGLELSIDSQEFKSTLTQTISSINEWNQKVVLAGMNLKI--KDNKISFV 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  R+++ E+ +     +   II+P K + E LR L       K+ + ++     +++
Sbjct: 175 TTDLFRVSLKEIILNEATNQEVDIIIPYKTLIE-LRNLIENVKEFKIIIHDTNATFKLDN 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293
             +   LIDG +PN  +  P +++ +L +    L + + R  + +   I + V L +   
Sbjct: 234 DLLQSTLIDGRYPNVHSAFPTTHEIKLELKAKTLLKVLSRFELTNDQNITSVVNLEIQQS 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVV-FRL 350
            + +     +  K  E    Y  E    ++I FN KYL+E I +       DD+++    
Sbjct: 294 GIILKTTIAETVKYEEKFTEYKYEGSSNLNINFNTKYLIEAIRSF------DDQLIHLTF 347

Query: 351 DSSNSSVFIRGKDK 364
           +S N  V I G  K
Sbjct: 348 NSQNKPVLITGAQK 361


>gi|295394845|ref|ZP_06805058.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972178|gb|EFG48040.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 383

 Score = 73.9 bits (180), Expect = 4e-11,   Method: Compositional matrix adjust.
 Identities = 94/389 (24%), Positives = 169/389 (43%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           +K  VER    + +  A + + ++  IPV   VL+ A+ +G +       E+     + A
Sbjct: 11  VKFKVERDVFADAVTWAAKNLPQRPVIPVLTGVLVTADSNGTVRFAFYDLEVSQRITVEA 70

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+  VS  LL DI R L    Q+     N    +V+IS G S F L + P  E+P
Sbjct: 71  DVETPGTFLVSGRLLADIARALPP-QQVVLELNN---GKVDISCGSSRFSLMTMPVEEYP 126

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                       +++S  ++ V +   A + ++    L  +   I  E  K+  +ATD +
Sbjct: 127 DLPTIPDTTGV-VSASTFQHAVSQVAVAASRDDTLPVLTSVRIEI--EGDKVTLLATDRY 183

Query: 180 RLAVAEVDIVAQIAKMPSIIVPR-KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV +     +     +  + R K + E+ + +S  D  + ++ S  +  L+  S    
Sbjct: 184 RLAVRQFTWNPRTPDFSANALLRAKTLSEVAKSMSG-DLEISIAESNGKEMLSFTSDGRV 242

Query: 239 VR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           V   LI+G++P  +++ P  +     +    LR+AV RVS+++  R   +K   +   L 
Sbjct: 243 VTSLLIEGDYPKVRSLFPKESTITAVLQVGALREAVRRVSLVAE-RNTPIKFEFTDGSLV 301

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A E++        +   FN  Y+ E ++ I +       V F L      
Sbjct: 302 LRAGAGDDAQASEALPATIEGGDILTGFNPHYISEGLNAIDT-----PYVRFSLTDPKKP 356

Query: 357 VFIRGKDKDSKNNKDNKVNAF--YVLMPM 383
           V I G  +      D +V++   Y+LMP+
Sbjct: 357 VVISGMQE-----PDGEVDSAYRYLLMPI 380


>gi|317010749|gb|ADU84496.1| DNA polymerase III subunit beta [Helicobacter pylori SouthAfrica7]
          Length = 374

 Score = 73.6 bits (179), Expect = 5e-11,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 179/395 (45%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D       KE+ L     I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNITLETKEDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L G+    ++    L  V TD  
Sbjct: 117 EFPVIDPKVSLEVNAPFLVDAFKKIAPVVEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  ++  ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLKNISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVIENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + +      + V + 
Sbjct: 287 ALFESLDSEHSETAKTSIEIEKGLDIEKAFHLGVNAKFFLEALNALGT-----TQFVLQC 341

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + S+S   I+   ++ +++ + K++   ++MP+ +
Sbjct: 342 NESSSPFLIQEPLEEKQSHLNAKIST--LMMPITL 374


>gi|118799|sp|P21174|DPO3B_MICLU RecName: Full=DNA polymerase III subunit beta
 gi|149849|gb|AAA25316.1| DNA polymerase III beta subunit (dnaN) [Micrococcus luteus]
          Length = 310

 Score = 73.6 bits (179), Expect = 6e-11,   Method: Compositional matrix adjust.
 Identities = 75/314 (23%), Positives = 146/314 (46%), Gaps = 12/314 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + + +  A R +  +  +PV   +L+ A  G++ I +   E      I A 
Sbjct: 1   MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFP 119
           V+  G + VS  LL DIVR L   AQ++     EL G +V ++   S F L + P  ++P
Sbjct: 61  VETAGQVLVSGRLLNDIVRSLPQ-AQVTV----ELDGGKVLVTCRSSRFSLATMPVGDYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E     +  +  +   + V +   A + ++    L  +   I  + +    +ATD +
Sbjct: 116 ALPELP-APAGTVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGDTITF--LATDRY 172

Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+ E+    A  +   S+++  + + E+ + L S  D  + +  +   +         
Sbjct: 173 RLAMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DGE+P  +++ P S+  +  V+   L +A  RV++++  R  A+++  +  ++ +
Sbjct: 233 TSVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVAE-RNTALRMVFTEGQVTL 291

Query: 298 TVDNPDMGKAIESM 311
                D   A ES+
Sbjct: 292 DAGTGDDASANESV 305


>gi|26553454|ref|NP_757388.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2]
 gi|26453460|dbj|BAC43792.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2]
          Length = 378

 Score = 73.2 bits (178), Expect = 7e-11,   Method: Compositional matrix adjust.
 Identities = 82/353 (23%), Positives = 169/353 (47%), Gaps = 23/353 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V ++ ++  L     I E   + PV    L++ ND  ++   S   I     +  S
Sbjct: 7   MKIIVSKTKLINALRLCNSISENIFSSPVFLGTLIEVNDNEIKFTTSNGIISTHSIVAKS 66

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            D      G I +     + I+ KL++   I+  K +    +V  S  DSN  +    E 
Sbjct: 67  EDANILEKGRILIKTKPFFAIISKLKN-EMITLEKVDNSVIKVKTSTFDSNINIMD--EE 123

Query: 117 EFPSTKEEEYVYS----FELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKL 171
           ++P+     + Y+      ++  V K  + +  +A+   + +   ++GI F+    +  L
Sbjct: 124 QYPNI---NFSYNDWNQLSISPIVFKKSISKVKYAVNNNKEKINIMSGICFNSISSEKTL 180

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             +ATDG++LA  + +   Q  +    IV   ++ E+L  +   D+++++ L ES I   
Sbjct: 181 EIIATDGYKLAHYKFESTPQDFR----IVLDVSLIELLLEIIDFDTNIEIFLFESNIIFK 236

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSL 290
           + +  ++ ++I+G++PN   +I    + ++ ++   L +A++R ++I SS +   VKL+ 
Sbjct: 237 VSNTIIASKIIEGDYPNVSRIIATPKENKVNISKKTLVEALERGLAISSSEKKSIVKLNF 296

Query: 291 SSDKLCMTVDNPDMGKAIESMNV--YYNECPMDICFNYKYLLEIIDNISSDEV 341
           SS+ L ++  + D+G + E+++     NE P  I  N  +LL ++    +D +
Sbjct: 297 SSEVLEVSFSSSDLGNSKETVSCKGKVNE-PTPISLNNHFLLSLLKTFDNDNI 348


>gi|168704010|ref|ZP_02736287.1| DNA polymerase III subunit beta [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 67/305 (21%), Positives = 132/305 (43%), Gaps = 17/305 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T++R  +  LL  A   +  + T PV   V +  +DG + + A+  E+ +TG   A 
Sbjct: 1   MNLTIDRDTLAGLLRTAAPAVPSRTTAPVLRCVKVTTSDGSVSVSATNTELFVTGRATAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A ++   V KL     +S       G    + +   ++ L +   S+FP 
Sbjct: 61  TGKPGSLCVPADVIQSAV-KLAPSGPVSIVS----GARAELKYAGGSYKLNTEDVSKFPE 115

Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               E    SFE+ +  L   + R  F  +     +  +G++  +   +    AVATD  
Sbjct: 116 WVPPELQGVSFEIDAPALVRCLTRVAFCCSERVESFTTSGVWLEVANGEFN--AVATDSI 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +A   +   +    S +VP   V  +    S +   V V++  S +    +SLS++ 
Sbjct: 174 RLGIATAKVADGV--QASALVPAPTVQAVKAAFSGRTGPVTVTVWGSTVRFADDSLSIAS 231

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+ G+F  ++ +     +++++ + T      D  +++ +VR   V    +   + +T 
Sbjct: 232 PLLTGKFAPWRML-----EQKVKPHGTTFVD--DPSALLRAVRRATVTADAADTAVVLTG 284

Query: 300 DNPDM 304
           + P +
Sbjct: 285 EGPTL 289


>gi|229035394|ref|ZP_04189299.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
 gi|228727940|gb|EEL79011.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
          Length = 375

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 6   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 65

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 66  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 122

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 123 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 180

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 181 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 239

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 240 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 296

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 297 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 350 NQRPIVVVGAEDTTHSN-------LQLILPVRV 375


>gi|44004430|ref|NP_982098.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
 gi|229021575|ref|ZP_04178173.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
 gi|229027504|ref|ZP_04183734.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|229164606|ref|ZP_04292497.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
 gi|42741496|gb|AAS44941.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
 gi|228618841|gb|EEK75776.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
 gi|228733808|gb|EEL84572.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|228739746|gb|EEL90145.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
          Length = 370

 Score = 72.8 bits (177), Expect = 8e-11,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 1   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 235 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|228970059|ref|ZP_04130767.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228789679|gb|EEM37553.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 370

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175

Query: 176 TDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 176 TDAHRLARLHFDCTKVTIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 235 SIIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|149200629|ref|ZP_01877632.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155]
 gi|149136278|gb|EDM24728.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155]
          Length = 209

 Score = 72.8 bits (177), Expect = 9e-11,   Method: Compositional matrix adjust.
 Identities = 58/228 (25%), Positives = 106/228 (46%), Gaps = 21/228 (9%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           + G+   I   D     VATDG R+A+ E  I +  +     I+P KA  E+ ++L    
Sbjct: 1   MTGLLLTIT--DGTFTTVATDGRRMALVETVIGSDSSLDSDSILPLKAAQELPKVLEGS- 57

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
           S VKVSL ++    + + +    +L++G FPNY+ V+P   +  + +       A+DRVS
Sbjct: 58  SDVKVSLGDTHAVFSTDDVVFQTKLLEGNFPNYRMVMPPGFENHVTMPRDEFYSALDRVS 117

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
            +   +  AVKLSL+  ++ ++  N +   A   +   Y    +D+ FN  +L++ + ++
Sbjct: 118 QILD-KNPAVKLSLTPTEVLISAMN-NAEVAESPIPASYEGENLDLSFNASFLIDPLRHL 175

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +++                 +R  D+ S           YV+MP+R
Sbjct: 176 ECNKLT----------------LRFNDRLSPTGLYGDEGFLYVIMPLR 207


>gi|190015717|ref|YP_001967211.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|208702194|ref|YP_002267438.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217956718|ref|YP_002335812.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|229142295|ref|ZP_04270815.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
 gi|116584624|gb|ABK00741.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|208658049|gb|ACI30419.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217068406|gb|ACJ82654.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|228641146|gb|EEK97457.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
          Length = 370

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 235 SIIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|319440838|ref|ZP_07989994.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM
           44702]
          Length = 366

 Score = 72.4 bits (176), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 85/387 (21%), Positives = 152/387 (39%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  + D+   L      I  K T P+   VL+   D      A     ++   IP  
Sbjct: 1   MKTTFAKHDLARALELTKPAIPSKPTQPILAGVLITVGDDTATFDAFDQSSQVHTTIPCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + +    L+D+V KL D   I+      +G+    + G   F L      ++P 
Sbjct: 61  TSEPGQVLLPHRTLHDVVAKLPD-KPITI---THMGSAAQFTCGPRTFELPPMTLDDYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        +  S L   +     A   ++    L GI   ++  D  L   ATD  R
Sbjct: 117 LPDMPPAVG-TIDWSDLAAAIREVGAAAGRDDTLPMLTGI--KVDSHDGALTLAATDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA   +        M   ++P + +  + R     D  V +   + R+   +      +R
Sbjct: 174 LAHTTLPWDGDDLDM---LIPARDILTLARTTWHGD--VTIHHDQRRLGFTLGDTRTILR 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID +FP ++ +IP  +D  +R++   +  AV   S+++    Q V LS++S ++ +   
Sbjct: 229 LIDADFPKWRPLIPKDSDTTIRIDRKTMADAVKFTSVLAGDTGQVV-LSITSGQVTIASK 287

Query: 301 NPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               G   E  + +   NE  ++I F  +YLL   D ++ D      + F      + V+
Sbjct: 288 TAQDGAGEEVIACDTVGNE--LNIAFTSRYLL---DALAGDGTA--LMTFTQPGRPAMVW 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               D   +  K    +  ++LMP+R+
Sbjct: 341 ---PDLPCEEGKVPDADRGHLLMPVRL 364


>gi|332798025|ref|YP_004459524.1| DNA polymerase III subunit beta [Tepidanaerobacter sp. Re1]
 gi|332695760|gb|AEE90217.1| DNA polymerase III, beta subunit [Tepidanaerobacter sp. Re1]
          Length = 381

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 83/355 (23%), Positives = 156/355 (43%), Gaps = 23/355 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + R+++   +    + +  K  I +   +   A D  L + A+  ++ I   I   
Sbjct: 1   MKIVISRNELASGISAVEKFVPSKTPISILTGIKFSAYDDFLCLSATNLDMGIEYKIKNE 60

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            D       GSI + + +L +IVR++ +       +EN+      IS G  N  L  F  
Sbjct: 61  SDKLSILEGGSIVIGSKILSEIVRRISENTVEFDIRENK----AYISSGQFNMVLPCFDA 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAV 174
            +FP            L  S+ K++++RT +A A +   R  L G    I+ +D  L  V
Sbjct: 117 MDFPEISRNNSSDGIRLRQSMFKDMIKRTIYARADDTTSRPQLTGAL--IDYKDNILNMV 174

Query: 175 ATDGHRLA-----VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRI 228
           A DG R+A     + E +  A   +    IVP   + EI RI    + +  ++  S++ +
Sbjct: 175 ALDGFRIAWCCEQLNETE--ASDIREFKTIVPGDTLLEISRIFEDDEQAYFELYASKNSV 232

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAV 286
               E   ++ R++DG+F +Y+ V+         V    LR AV+R S+++        V
Sbjct: 233 EFLTEKFLITSRVLDGDFIDYKTVMQIKPKTTAIVPTDELRLAVERASVLAREGNTNNLV 292

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           K  ++ + + + V+  ++G+  + +        M I FN  + ++ +  I S ++
Sbjct: 293 KFYIAENSIEVQVET-ELGRITDKVLCSTEGEEMLIAFNAGFFIDALKTIFSPKI 346


>gi|208434423|ref|YP_002266089.1| DNA polymerase III beta-subunit [Helicobacter pylori G27]
 gi|208432352|gb|ACI27223.1| DNA polymerase III beta-subunit [Helicobacter pylori G27]
          Length = 374

 Score = 72.0 bits (175), Expect = 1e-10,   Method: Compositional matrix adjust.
 Identities = 80/352 (22%), Positives = 160/352 (45%), Gaps = 24/352 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++++   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLV----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS---SKDSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++     S  S   +++ E+  H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL-SSD 293
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  ++
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVV 342
            L  ++D+     A  S+ +      E    +  N K+ LE ++ + + + V
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTTQFV 338


>gi|296271493|ref|YP_003654125.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833]
 gi|296094280|gb|ADG90232.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833]
          Length = 364

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 72/342 (21%), Positives = 155/342 (45%), Gaps = 12/342 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V R  + + +    R++  ++T+P    +LL+A D  L I     E+     I A 
Sbjct: 1   MKIRVNRDVLADAVAWTARLLPGRSTVPALSGLLLEA-DADLRISVFDYEVSAWAQIEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +   +L +I + L D   +  +++   G E  ++ G   + L   P+ +FPS
Sbjct: 60  VAAPGRVLIPGRVLAEITKSLPD-RPVDLYRD---GGEAVLTCGSLEYDLLVLPDEDFPS 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  +   V  +   +   A + ++    L G+   I+ + +++   ATD +R
Sbjct: 116 LPAMPP-KAGAVGGGVFASAAGQVAAAASRDDSLPMLTGV--RIDIDGVRVSMAATDRYR 172

Query: 181 LAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A  E     +   +   ++VP + + E  R  S ++  + + L E+ I L  +  ++ V
Sbjct: 173 IAAREFLWHPERPDERRGVVVPARLLVEAAR--SLREGEISIGLGENVIGLRNQDRTVIV 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL+D +F +Y++ +         +      +AV RV++++      V+L+ S  ++ +  
Sbjct: 231 RLLDDQFIDYRSRLSEQWPIHADLALAPFVEAVKRVTLVAEPN-TPVRLAFSPGQVLIRA 289

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
               +G++ E +    +   +DI F   +LL+ +  + ++ V
Sbjct: 290 GGGSIGRSTEIVAAELDGPDIDIAFQPHFLLDGLAGVETERV 331


>gi|330948082|gb|EGH48342.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 109

 Score = 72.0 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 63/109 (57%)

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       + +
Sbjct: 1   HRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFT 60

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++
Sbjct: 61  SKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIR 109


>gi|190014973|ref|YP_001966586.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|190015240|ref|YP_001966912.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|218848497|ref|YP_002454937.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|116584649|gb|ABK00764.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|116584921|gb|ABK01030.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|218540548|gb|ACK92944.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
          Length = 370

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 235 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|221642091|ref|YP_002533178.1| DNA polymerase III, beta subunit [Bacillus cereus Q1]
 gi|229113013|ref|ZP_04242513.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
 gi|221243026|gb|ACM15735.1| DNA polymerase III, beta subunit [Bacillus cereus Q1]
 gi|228670406|gb|EEL25749.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
          Length = 370

 Score = 71.6 bits (174), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 82/393 (20%), Positives = 178/393 (45%), Gaps = 31/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N  G++ + + G E + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+  ++   D K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGV--NLKSVDDKFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIE 233
           TD HRLA    D     IAK   +++P K++   L++ + +++++++ L S++++ +  E
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFN-RETNLQLKLISDTQLLIRGE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S+    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   +
Sbjct: 235 SIIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKE 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +   N  +G A  S+ +  N+     +  N +YLL+ +  I+S     + +  ++ S
Sbjct: 292 SIHLKPQNSQVGTA--SVEIPCNQVEAFTLACNVEYLLQALQTITS-----ETIAIKMIS 344

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + + G +  + +N         +++P+R+
Sbjct: 345 NQRPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|325914679|ref|ZP_08177020.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539181|gb|EGD10836.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 374

 Score = 71.2 bits (173), Expect = 2e-10,   Method: Compositional matrix adjust.
 Identities = 84/359 (23%), Positives = 151/359 (42%), Gaps = 32/359 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCH--VLLQANDGL-LEIKASGPEIEITGAI 57
           M IT  R D+L  +     + +R+ T   + H  + ++A +G  +    S    +I  A 
Sbjct: 1   MHITTTREDLLAAIAPLMSVAQRR-TKSRNGHANLTIRAGEGTQIHFNTSDENSDICTAS 59

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ---SFP 114
            A++   G I VSA  L DI+R    G+ +   ++   G  +NI    S F +       
Sbjct: 60  TATIRERGEIGVSAKRLSDIMRSFASGSLVEMQRK---GNFLNIKLDGSRFSINCDGPLA 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCA 173
                + K  +    F+LA+   K L++     +A       L  G+ FH+  + L+L  
Sbjct: 117 PVTRQAAKTGQTTGKFDLAADEFKYLLDAACSGVAGLGSDSKLPQGVLFHLTGDRLRL-- 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLN 231
           V TDG R+AVA   I     +   +++   +V +I  +LS    D  +  S      H+ 
Sbjct: 175 VGTDGGRMAVASTSI--NTLQAEKLVLGHNSVADIRTLLSKARSDEQIGFSWGSGMAHIK 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                + V ++   + +Y+ ++  +      V   +LR+ + R  I+S+    AV + L+
Sbjct: 233 TTYADLHVGVLANTYVDYERIMAANTVNPFHVGLADLREILTRTLILST----AVTVKLT 288

Query: 292 SDKLC-MTVDNPDMGKAIESMNVYYNECPMD--------ICFNYKYLLEIIDNISSDEV 341
              L  +T D     +  ES+     E P D        I  N +YLL+ ++ +  + V
Sbjct: 289 GRTLSFITADQASRSQGQESIESI--ELPADARRVNDFAISVNAQYLLDALNAVRGESV 345


>gi|258406589|ref|YP_003199331.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM
           5692]
 gi|257798816|gb|ACV69753.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM
           5692]
          Length = 393

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 95/411 (23%), Positives = 168/411 (40%), Gaps = 58/411 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + + +  +L     A  II  K        + L+A D  L I ++  ++E +G+ PA 
Sbjct: 1   MLVRISKEQVLSGFQKAAGIIPMKTGAAFLRTIWLEAKDNHLTIMSTDSKLEFSGSYPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS------FP 114
           V+  G I V     YD+ RKL  G       ++E    V +  G   + L +       P
Sbjct: 61  VETPGLIGVPGKKFYDLFRKLPPGEITLHAADSE--DHVLLEQGRRKYKLPTNDASWFQP 118

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN--GIFFHINEEDLKLC 172
            S FP   E+E V     +   LK ++ R  + +A +E    +N   I    N E ++ C
Sbjct: 119 FSAFP---EDEAVL---WSGDFLKEIINRITYCVADDESMNGMNCLKITPWPNSEAVEAC 172

Query: 173 AVATDGHRLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESR 227
            +  +GH+ A+      DI A        I+P+   GE   IL +K+    +K  LS   
Sbjct: 173 GL--NGHQFALMRFLNPDIHA--------ILPQDDEGEDSGILIAKNYLLELKKWLSSDE 222

Query: 228 IHLNIESLSM-----------SVRLIDGEFPNYQNVIPCSNDKELRVNCTN--LRQAVDR 274
           I+  I+   +           S+ L   +FP Y+  +    ++  ++N     +  A++R
Sbjct: 223 IYFTIDQKRLFFTNGKKNEIFSLPLSTYKFPKYETFLSNFQNETSKLNIGRDEILDALER 282

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           V++ ++   +       S ++ +     + G+A ES+ V Y+     I F    L+E++ 
Sbjct: 283 VALFNTENQRCSYFVFDSTEMIVYSQGQETGEATESLGVEYSGDLKKIAFPTTTLIEVLS 342

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  S     + + F          I GK+ DS            V+MPM +
Sbjct: 343 HFQS-----EMITFEFTGVEGPCKITGKE-DS--------GYLVVVMPMHV 379


>gi|298529212|ref|ZP_07016615.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510648|gb|EFI34551.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 386

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 77/354 (21%), Positives = 165/354 (46%), Gaps = 21/354 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + + D +E +  A  +I  K        +  + +   + I ++   +E TG   A 
Sbjct: 1   MKIIIYKEDFVEGISKASNLIPTKTGAAYLRTIWFKTDMDSVRIMSTDSNVEFTGEYRAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I      + D++RKL+ G  I+ +  +E    + +     +F L     S FP 
Sbjct: 61  IVEEGLIGTPGRKISDLIRKLKSGP-ITMYS-DEKNDILYVQQEKRHFKLPLSESSWFPE 118

Query: 121 TKE--EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATD 177
             E  EE   +  +     K+++E++ F ++ ++    +  +     +E+ ++ CA   +
Sbjct: 119 LDEFPEENALA-GIPGIKFKDILEKSLFCISDDDTMQGMTCLKIAPGDENQVEFCAF--N 175

Query: 178 GHRLA--VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--- 232
           GH+L+  + E   + +I     I++ +K + ++ + +   D  +++++++S+I       
Sbjct: 176 GHQLSLYIHESSGLREILPEKGIMIAKKYLMDLRKWVPESD--IQITITDSKIFFRTLDK 233

Query: 233 -ESLSMSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            E  S+ + +   +FPNY++ I   ++K    L     +L  +++R+ I ++    +  +
Sbjct: 234 KECFSLPLNM--HQFPNYRDFINNYSEKLGGPLVTTKNDLMDSLERILIFNTDSQMSTLM 291

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            L  +++ MT    D G+A E +   Y     ++ FN K LLEI+ +I  D VV
Sbjct: 292 RLGQEEIYMTSTAVDSGEAEEVVGCSYQGNLKEVVFNTKSLLEILGHIDDDNVV 345


>gi|39938488|ref|NP_950254.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M]
 gi|39721597|dbj|BAD04087.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M]
          Length = 378

 Score = 71.2 bits (173), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 89/381 (23%), Positives = 174/381 (45%), Gaps = 31/381 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + + +   LE L    +I+ +K   P+   + +Q  +  L ++A+   I I   I   
Sbjct: 1   MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENNLILEANNGNIAIKIEIKDE 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQ---SF 113
              +   G I        +I++K+ D   +I+  + N L   +  S  +    L    +F
Sbjct: 61  SLKIKKQGKIACLGRYFIEIIKKISDSLIKITVMENNFLV--IKTSFCEYKLKLMDVCNF 118

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
            E +F   K +    SF++ +  LKN+++  + + +  E R  L G+        LK C 
Sbjct: 119 LELDFSFQKLD----SFQIETHFLKNMIKEINISTSKNEKRPILMGLNLIYQNNLLKAC- 173

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNI 232
            ATD  R++  ++++  +     +I++P K++ E+ +IL    S  +K+     +I L I
Sbjct: 174 -ATDSFRMSQKKINLDIEYHNF-NIVIPNKSLEELSKILEHCQSKYLKIYSDTQKIFLEI 231

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLS 289
           ++L     L++G +P  Q +   +    + +N  +L +A++RVS++ S   +    +K  
Sbjct: 232 DNLWFQTSLLEGNYPQIQEIKLTNFPFSVHLNKDDLMKALERVSLLFSKEQMNTNVIKFI 291

Query: 290 LS-SDKLCMTVDNPDMGKAIES---MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           L+  + + ++  +  +G A+E    + V  N     I FN KYL +++  +S       E
Sbjct: 292 LTKQNSIEISSSSESLGTALEKIIPLKVSANS--FQIAFNAKYLEDVLKVLSV-----KE 344

Query: 346 VVFRLDSSNSSVFIRGKDKDS 366
           VVF  D+      I   +KDS
Sbjct: 345 VVFYFDNPLKPFIITTLEKDS 365


>gi|296271547|ref|YP_003654178.1| DNA polymerase III subunit beta [Arcobacter nitrofigilis DSM 7299]
 gi|296095722|gb|ADG91672.1| DNA polymerase III, beta subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 356

 Score = 70.9 bits (172), Expect = 3e-10,   Method: Compositional matrix adjust.
 Identities = 78/350 (22%), Positives = 166/350 (47%), Gaps = 30/350 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEI---TGAI 57
           M+  + ++    ++      +E+K++  ++ H+ L+  +  L +KA+  EI +      I
Sbjct: 1   MRFIIAKNIFENIISSMQPFLEKKDSSSITSHIYLEVINSKLILKATDYEIGLESYVNDI 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             S D  G  TV+   L  I+++L++   I    +N L     I    S F L  +  +E
Sbjct: 61  EESTDGKG--TVNGSNLLGIIKRLKNDKIIVETIDNNLV----IKQSRSTFKLPMYDANE 114

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+      +    +++  L N + +   A+     ++ LNG    I  ++ K+  VATD
Sbjct: 115 YPNLIMNTELNILNISTISLVNSIRKITPAIDNNNPKFELNGALIDI--KNSKINFVATD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             RLA++ +  ++        I+P+KA+ EI ++        K++  ++ + +  ++   
Sbjct: 173 TRRLAISHLQNISN--NESQFIIPKKAIIEIQKLFLD---DAKIAYDDTNLVIETDNSKF 227

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA--VDRVSIMSSVRIQAVKLSLSSDKL 295
             +LI+G+FP+Y+ +IP S    L+ N T L +A  +D + +++S+    +K++ S + +
Sbjct: 228 FTKLINGKFPDYERIIPNS----LKYNLT-LPKAMLIDSIKLVTSL-FSNIKITFSPNSM 281

Query: 296 CMTVDNPDMGKAIE---SMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
                + D     +    +N+  N     +  N KYLL+ +   +++ VV
Sbjct: 282 VFESLDEDTESKTQIDIDLNISEN---FYLAVNAKYLLDFLSMSNNENVV 328


>gi|262340837|ref|YP_003283692.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272174|gb|ACY40082.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 386

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 68/292 (23%), Positives = 145/292 (49%), Gaps = 25/292 (8%)

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--YLQSFPESEFPSTKEE 124
           + VS  L+ D++    +  +  FFK+ ++   +    G      Y   +  + F   K++
Sbjct: 68  VVVSTKLMIDVLTTFPN--ETLFFKKKKIALNIFSEQGSYKIPIYFHKYSMNFF---KKK 122

Query: 125 EYVY-----SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           E ++        L S++L  ++ +T FA+  ++ +  LNG+FF  +  +     VATD  
Sbjct: 123 ESIFRSSTMKITLFSNILSKILNQTLFAVGDKKFQPILNGVFFQFSPYEANF--VATDTF 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL--NIESLSM 237
           R+    +  + +  K     +P+K++  I  IL ++ +S  V    ++I++  + ++   
Sbjct: 181 RMVKYTIKNL-KFDKYIEFTIPKKSLDIIREILKNEKNSNIVIEYNNKINIVFHFQNHIF 239

Query: 238 SVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           S RLI+ ++PNY +VIP +N D    +N   L   + R+SI S  +   + L L+ +KL 
Sbjct: 240 SCRLINQKYPNYNSVIPNNNCDVSFVINRLLLLNTIRRISIFSKKKKNFIHLHLNRNKLK 299

Query: 297 M----TVDNPDMGKAIESMNVYYNECPMD---ICFNYKYLLEIIDNISSDEV 341
           +     ++N + G  I+   ++ +   ++   + FN K+L+EI+ +++ + +
Sbjct: 300 IFEQKAINNYNFGSKIKCKPIFDDLRKIESIQMGFNSKFLIEILSSLNENFI 351


>gi|212703754|ref|ZP_03311882.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098]
 gi|212672722|gb|EEB33205.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098]
          Length = 384

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 91/402 (22%), Positives = 180/402 (44%), Gaps = 46/402 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++V +  I+E L  A  II  K        + L+A  G L I A+   IE TG  PA 
Sbjct: 1   MKLSVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEKGSLSIMATDANIEFTGRYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNF--------YLQ 111
           V   G I V      D+VR+L  G  Q++    +E    + +  G   +        + Q
Sbjct: 61  VKQPGLIGVQGRAFVDLVRQLPAGVLQLTL---DESTGNLLLEQGRRTYKLPVSGAEWFQ 117

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLK 170
           +F  SEFP      +   F      L+++++R  F ++ ++    +  ++        + 
Sbjct: 118 NF--SEFPDETPVTWSGDF------LQDVLDRVVFCISDDDATDAITCLYMKPCGNGRID 169

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           +C +  +GH+ A+         A++P   +++ +K + ++ + L   +  +++++++ R+
Sbjct: 170 VCGL--NGHQFALVSFTHDDLAARLPEEGVLIQKKYLQDMKKWLGVDE--IELNITDKRL 225

Query: 229 HLNI--ESLSMSVRLIDGEFPNY---QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
           +L     + S+SV     ++P+Y    + +       L VN     +A+ R+ I ++   
Sbjct: 226 YLRTLDGAESLSVPRAGHDYPDYTVFMSRLEGDGVSLLTVNRKEAIEALGRIQIFNTDSD 285

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +   L L  +++ ++    D G A ES+ V Y      I F  + L++++ + SS  V  
Sbjct: 286 RCAYLDLGDNEVRLSAQGQDTGSANESLEVTYRGDISRIAFPTRNLMDVLGHFSSPSV-- 343

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D +   L  +     IRG       ++DN+     ++MPM+I
Sbjct: 344 DMI---LTGAEGPCGIRG-------SEDNEYTV--IIMPMKI 373


>gi|253584029|ref|ZP_04861227.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium
           ATCC 27725]
 gi|251834601|gb|EES63164.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium
           ATCC 27725]
          Length = 363

 Score = 70.5 bits (171), Expect = 4e-10,   Method: Compositional matrix adjust.
 Identities = 90/394 (22%), Positives = 163/394 (41%), Gaps = 42/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R +++ +L     I++     P+   + ++A   L+    +  E++    + A 
Sbjct: 1   MKFSIKREELISILSEYTNILKENPIKPIVSGLQIKAESNLITFVGTNLEVDHIRKVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +   LL + + KL D   I F   N     + + H +         E  FP 
Sbjct: 61  VKEEGSLVLKPFLLLEYI-KLLDEEYIEFILNNGF---ITVHHAE----FSILEEGTFPI 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI--FFHINEEDLKLCAVATDG 178
             E   +    +       L+E++ FA +       +N +   F +NE +L    V+TD 
Sbjct: 113 ITETTPIKLLSINGGEFVKLLEKSKFAASLTSDNIQINCVRAIFKLNEINL----VSTDS 168

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL   + +    + K   I +P   +  I ++L   +  V +  S   I L  E+   S
Sbjct: 169 YRLLYLKNEKNCHVEK--EISIPMDTINVICKLLKDSEKEVIIGFSGENIILTWENAYFS 226

Query: 239 VRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
            + I   FP+++ ++  S+  K +  N   L+ A+ RV  ++   + A   ++   K   
Sbjct: 227 SKTIALPFPDFKGILANSSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKT 286

Query: 298 TVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            + N   GKA   + +N+           N K+L E IDNIS + V+          SN+
Sbjct: 287 LLINAFSGKAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVI--------KGSNA 338

Query: 356 SVFIR----GKDKDSKNNKDNKVNAFYVLMPMRI 385
           S        GKD D K          Y+LMP+ +
Sbjct: 339 SSMFEITEIGKD-DYK----------YILMPLAL 361


>gi|220903290|ref|YP_002478602.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867589|gb|ACL47924.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 384

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 85/400 (21%), Positives = 176/400 (44%), Gaps = 42/400 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV +  I+E L  A  II  K        + L+A DG L + ++   IE TG   A 
Sbjct: 1   MKLTVNKEQIIEGLLKAVAIIPAKAGAQYLRSIWLKAEDGGLSVMSTDANIEFTGRYQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           V   G I V      D+VR+L  G  +     +E    + +  G   +        + Q+
Sbjct: 61  VAQPGLIGVQGRAFVDLVRQLPSG--VLHLSLDEASGNLLVEQGRRTYKLPVSGAEWFQN 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  S FP    EE   ++  +   L++L+++  F ++ ++    +      + + + ++ 
Sbjct: 119 F--SSFP----EENTVTW--SGDFLQDLLDKVAFCISDDDAMDAI-ACLCMMPKGNGRID 169

Query: 173 AVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
               +GH+ A+     D +A+      I++ +K + +I + L   +  +++S++  R++L
Sbjct: 170 VCGLNGHQFALVSFTHDELAERLPEEGILIQKKYLQDIKKWLGVDE--IELSITGKRLYL 227

Query: 231 NIESLSMSVRLIDG--EFPNYQ---NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
              S + ++ L     ++P+Y    + +   +   + ++     +A+ R+ I ++   + 
Sbjct: 228 RSMSKAETLSLPRATHQYPDYSIFMSKLASEDMHPMTLDRKEAMEALGRILIFNTESDRC 287

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
             + LSS +  ++    D+G A ES+ V Y      I F  + L++++ +      V  +
Sbjct: 288 TYMDLSSGEALLSAQGQDVGSASESLEVTYGGDIKRIAFPTRNLMDVLAHF-----VSGK 342

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               L  +     IRG D     + D  V    ++MPM++
Sbjct: 343 TDMMLTGAEGPCGIRGAD-----DPDYTV----IIMPMKV 373


>gi|89097418|ref|ZP_01170307.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
 gi|89087714|gb|EAR66826.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
          Length = 392

 Score = 70.1 bits (170), Expect = 5e-10,   Method: Compositional matrix adjust.
 Identities = 81/397 (20%), Positives = 161/397 (40%), Gaps = 34/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  V    I E +  A RI    ++      V+++A+ G L + +   +  +    P  
Sbjct: 1   MEFKVNGESIFESISEAARIAGGSHSAAGKL-VMIEAHSGGLSVSSGNGDRSVIFEHPLI 59

Query: 59  ----ASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
               + +D+   G +     +L +++RK+    ++S          +N      +  +  
Sbjct: 60  NCRDSGLDILEYGKLAADGRMLSEVIRKIP--GRLSIKASTSHKILINSMDKQISAAIAG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  +FP     E+ Y + L +S L   +  T  + A    R  L GI    +E  L   
Sbjct: 118 FPLDQFPDRAHVEFPYIYPLEASDLAAGLRNTAASAAKTSSRPILEGINLAFDENGLTF- 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLN 231
             ATD  RLA+ + D  A  ++  S  +P +   E+L+++  S      + +S+S+    
Sbjct: 177 -TATDSSRLAMWKADGSAGFSQ--SFTLPARNAAELLKLIGKSPSGEAAIYISDSQAVFA 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
             +      L+ G FP+ + + P     EL +N  +L Q V R  I +  +  ++    +
Sbjct: 234 TSTFRFCSSLLTGRFPSSEKLKPEGCKTELVINRKHLLQGVKRTMIFAGEKRSSLVSIQA 293

Query: 292 SDKLCMTVDNP--DMG--KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            D+  +T+ +P  +MG  + ++ +     E       N  YL + +    S     + + 
Sbjct: 294 KDENSITISSPMSEMGMIEEVQELQSIRGETEASAVINGSYLADALIGTES-----EYIK 348

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            RL  +   + I         +   + N F+++ P+R
Sbjct: 349 IRLYGTMKPILI---------SSPGEANYFHLISPVR 376


>gi|46204942|ref|ZP_00049263.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 113

 Score = 70.1 bits (170), Expect = 6e-10,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +TV+R  +L  L    RI+ER+NTIP+  +V L      L ++ +  +IE      A+
Sbjct: 1   MLLTVQREALLRPLAVTHRIVERRNTIPILSNVRLGTEGTTLTVRGTDLDIEAASTCEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +D  G++TV A  L DIV KL  GA+I+  ++   G ++ +S G + F L + P
Sbjct: 61  IDEPGALTVPAQTLRDIVHKLPQGAEITLRQDAGSG-QLALSAGRARFKLPTLP 113


>gi|227496604|ref|ZP_03926882.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226833884|gb|EEH66267.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 377

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 92/398 (23%), Positives = 168/398 (42%), Gaps = 38/398 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + E +    R +  +  +PV   V L+A++  L + +   E+     IPA 
Sbjct: 1   MKLRVDRDVLAEAVTWTARSVPARPPVPVLAGVRLEASNASLVLASFDYEVSAHCEIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G + VS  LL DI + L         K  +L   GT+V +S G S F L +    +
Sbjct: 61  VEEEGVVLVSGRLLADIAKALPS-------KPVDLEVEGTKVTVSCGSSRFALAAMAAED 113

Query: 118 FPS----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           +P+          V + +LA +     V +   A + +E    L  +   ++ + L L  
Sbjct: 114 YPTLPVMPSTAGTVDAHDLAQA-----VAQVSIAASRDETLPLLTSVQMEVDGDRLTL-- 166

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESR----- 227
           +ATD +RLAV E+   +Q   + +  ++  + + ++ + L+S    V V+L+E+      
Sbjct: 167 MATDRYRLAVREMTWASQDKTLSTHALLKARTLSDVAKSLTST-GDVTVALTEAGSTTSG 225

Query: 228 -IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
            I         +  L DG++P    + P        V    L  AV RVS+++  R   +
Sbjct: 226 LIGFEAGGRRTTSLLTDGDYPPVLRLFPEETSIHATVGREELMAAVRRVSLVAD-RSTPI 284

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +S +   L +     +  +A E +  +     +   FN  YLL+ +  I    V  D  
Sbjct: 285 HMSFTQGSLALDAGAGEDAQASEQLVAHLEGEDISTAFNPGYLLDGLGAIHQPYVTLD-- 342

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                  +    + G D       +  ++  Y++MP+R
Sbjct: 343 ---FTHPSKPAVLTGVD---SIGGEKDLSFRYLIMPIR 374


>gi|313635498|gb|EFS01734.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067]
          Length = 175

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 49/178 (27%), Positives = 84/178 (47%), Gaps = 13/178 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTTNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
                E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E  L
Sbjct: 117 GLDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKENKL 174


>gi|21233713|ref|NP_640011.1| DNA polymerase III beta chain [Proteus vulgaris]
 gi|21202897|dbj|BAB93613.1| DNA polymerase III beta chain [Proteus vulgaris]
          Length = 422

 Score = 69.7 bits (169), Expect = 7e-10,   Method: Compositional matrix adjust.
 Identities = 41/165 (24%), Positives = 87/165 (52%), Gaps = 20/165 (12%)

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV---- 183
           YS    +++L   ++R   +    ++R+Y+NG+F  +++      AVATDGHR++V    
Sbjct: 150 YSITFPANMLHRTLQRVMHSAGKNDVRHYMNGVFLSLDKNVFN--AVATDGHRMSVMTED 207

Query: 184 ------AEVDIVAQIAKMP------SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
                  + DI + +A +        +I+P +    ++++L++   S ++  SES +  N
Sbjct: 208 VLFTDEPQEDITSPVAPVSLSGTSSGVILPIEVCPILMKLLAANKGSFRMDYSESYLTFN 267

Query: 232 IESLSMSVRLIDGEFPNYQNV--IPCSNDKELRVNCTNLRQAVDR 274
           +  +++   LI+G +P+++ V  +   N ++  VN   LR+A+ R
Sbjct: 268 LGDVTVVSNLINGRYPDWRRVAGVVKHNTEKFSVNALVLREALSR 312


>gi|227876543|ref|ZP_03994654.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243]
 gi|306817504|ref|ZP_07451248.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|227842857|gb|EEJ53055.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243]
 gi|304649728|gb|EFM47009.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 352

 Score = 69.7 bits (169), Expect = 8e-10,   Method: Compositional matrix adjust.
 Identities = 75/329 (22%), Positives = 150/329 (45%), Gaps = 25/329 (7%)

Query: 65  GSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
           G++ V   LL +  R L +  +++SF  E+     ++I+ G  +  L   PE ++P   +
Sbjct: 37  GTVVVDGKLLSETARALPNKISEVSFKTEDNY---LHITCGSFHQQLLVMPEEDYPQLPQ 93

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
              V   ++ + V  + + +   A + +E    L GI   I  E  KLC +ATD +R+A+
Sbjct: 94  LPQVVG-QVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDRYRMAL 150

Query: 184 AEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
            E+   A   ++   ++V  K + +  + ++S   S+ +++        +  LS   RL 
Sbjct: 151 KEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAGGRLF 209

Query: 243 -----DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLC 296
                DG +P+ + + P   +    V  ++   A  RV+I+S+ +  Q + LS +   L 
Sbjct: 210 TSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQGTLE 269

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV-FRLDSSNS 355
               +     A +++ V  N   + + FN + L+E +       VVD+  V         
Sbjct: 270 FRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGL------SVVDEPYVRLSFKDETK 323

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            V I G+ +++    D+ ++  Y++MP+R
Sbjct: 324 PVIITGQKEET---GDDSLDFQYLIMPIR 349


>gi|261749644|ref|YP_003257330.1| DNA polymerase III subunit beta [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497737|gb|ACX84187.1| DNA polymerase III, beta subunit [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 382

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 58/231 (25%), Positives = 110/231 (47%), Gaps = 18/231 (7%)

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           L S +L  ++ +T FA   EEI+  +NG+FF  + +      VATD ++L    +  +  
Sbjct: 136 LFSKILLKILNKTLFATGNEEIKPVMNGVFFRFSPKGATF--VATDTYKLVKYTLKNIKS 193

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI-HLNIESLSMSVRLIDGEFPNYQ 250
             +    I+ RK++  +  IL ++  SV +   ++ I   + E+ +    LI+ ++P+Y 
Sbjct: 194 -NQYIEFIISRKSLRILKNILFNEKKSVTIEYKKTGILKFSFETKTFLCELINEKYPDYN 252

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG----- 305
           +V P   D    +N      ++ R+S+ S      ++ +LS + L +  +N  +      
Sbjct: 253 SVFPKKKDISFIINRLFFLNSIKRISLFSKEETNFIRFNLSDNTLRIYEENTRISIFSKI 312

Query: 306 --KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             K I     + +E  + + FN K+L+EI+ +       +D V F L SSN
Sbjct: 313 RCKYIAEY--FRDESIIKMGFNSKFLIEILSSFK-----EDFVSFELYSSN 356


>gi|310780294|ref|YP_003968626.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
 gi|309749617|gb|ADO84278.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
          Length = 363

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 88/394 (22%), Positives = 174/394 (44%), Gaps = 42/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V R ++++LL +   +I+  +  PV     L+A +G+     S  E     +IPA 
Sbjct: 1   MKIRVNREELIKLLSNLSVVIKENSIKPVISGTKLEAKNGMAVFTGSNLEFSFISSIPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP---ESE 117
           ++  G       L+ + ++ L+         EN    ++ +S G    +   F      E
Sbjct: 61  IENEGVTVFKIPLILEYIKLLE--------VEN---LDITVSEGKLLIHRAEFSIMDWEE 109

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P  K+ E    FE+ S  + +  E+  F+         +N I    ++ +L +  ++TD
Sbjct: 110 YPEIKQPESENIFEVESQEIISAFEKVKFSAFPTADNLAINCIRMACDDNELNM--ISTD 167

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS- 236
            +RL    ++   + +KM  + +P ++V  I ++L  KDS  K S       L I+  + 
Sbjct: 168 SYRLTKYFLETPCK-SKM-EVSIPLESVNIICKLL--KDSEEKASFGVKNGILTIKKGNS 223

Query: 237 -MSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLS 291
            MS RLI+  FP+Y+ +    S  K + +N  + + ++ +V  ++   I+          
Sbjct: 224 FMSTRLIELPFPDYKTIFKNMSYTKNIELNTADFKGSMKKVLTVAKRNIETKNGAIFEFK 283

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            ++L  TV +    K ++ ++            N K++ + I NI  + ++         
Sbjct: 284 GNRLISTVSSGS-AKTVQKIDTIKEGEDFKASLNVKFVYDFISNIQKNILIK-------A 335

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +++SS+FI     +   NK+ K    Y+LMP+ +
Sbjct: 336 TNSSSMFIM----EEAGNKNYK----YILMPLAL 361


>gi|255039230|ref|YP_003089851.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
 gi|254951986|gb|ACT96686.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
          Length = 382

 Score = 69.3 bits (168), Expect = 9e-10,   Method: Compositional matrix adjust.
 Identities = 78/344 (22%), Positives = 158/344 (45%), Gaps = 17/344 (4%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           +VE +D+   L    +++     IP+  ++L      L E+  +G  +  T  +  S+  
Sbjct: 11  SVETADLKRALHLFAKVVREAPLIPILDNILFSFE--LDELHLTGSNLITT--VFTSIQA 66

Query: 64  CGSITVSAHLL-YDIVR---KLQDGAQISF--FKENELGTEVNISHGDSNFYLQSFPE-S 116
            GS TV   LL Y  ++    L    +I+F   +  ++GTEV ++     F   S  +  
Sbjct: 67  DGSSTVGKFLLPYRQIKALVSLSPAGKIAFRAVESEDVGTEVMVTTEYGEFKFSSLEKIG 126

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+      +  F +    L+  ++ T   ++T+E+R  L GI+F   E  +K   ++T
Sbjct: 127 DYPALSWSP-ISHFNIGMDELREGMKLTRKTVSTDELRPPLTGIYFDTAEGCIKF--IST 183

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS-LSESRIHLNIESL 235
           DGH+L   E    A  + +P  I+P      ++   + K ++V    L  +++  N  S 
Sbjct: 184 DGHKLTKYETSEPAVESILP-FILPANFADFVISNTALKQNAVSFGCLPGAKVVANFGSC 242

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            + VR ID  FPNY+  IP + +  ++++   ++  +    + S+     +    S+ +L
Sbjct: 243 VVLVRCIDEFFPNYKAAIPEAFEHAVQLDLAQIKTRIQLGLLFSNRATTQMAFVFSNGRL 302

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +  ++ D G K+ +S+ +      + I FN +++  I+   S 
Sbjct: 303 SLESEDFDYGMKSKQSLEMEQPVPELKIGFNVRFMSTILAPFSG 346


>gi|218848051|ref|YP_002454851.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|218546182|gb|ACK98575.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
          Length = 379

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 85/402 (21%), Positives = 180/402 (44%), Gaps = 41/402 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ + ++L  L    +   R  T+P+ C + L+A    L + AS  E  I   I  +
Sbjct: 1   MEFTINKQELLNNLVKVGKYSARSTTLPILCGIYLKATSNELLLVASNKEDTIVSTISET 60

Query: 61  VD---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            +   V     V    + DIV+KL D   +SF  +N     ++IS G +N+ L +    +
Sbjct: 61  NNFNIVQEGEVVVPKTITDIVKKLPDDT-VSFTLDN--NNSLHISSGKTNYSLNTLSADD 117

Query: 118 FP--STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +P  +TK  +++ +  L    L+  VE TH+  A    +  L GI   I  +++     A
Sbjct: 118 YPDFTTKTLKFLVTISLKK--LQRSVEATHYCAAENHSKPQLKGIEISITNKEIAFA--A 173

Query: 176 TDGHRLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           TD + L+ + + I      +   + S IVP K + + +++   ++  +    + +   L 
Sbjct: 174 TDANTLSRSTIPITTDNNIEEKLLYSCIVPSKWLYDAIKMFEEEEIELGFEGNSAI--LR 231

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR--QAVDRVSIMSSVR----IQA 285
            + L +  ++I+G++P+    +      +  ++   L+   ++++V+++ S+        
Sbjct: 232 SKDLHIKTQIIEGKYPDVVKFMEFEKKVKTTISTDRLQLINSLEQVNVICSMNNPKSAAL 291

Query: 286 VKLSLSSDKLCMTVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +KL L+S +  ++ +N  +G  I    + +     P+ I F+  Y+L  + ++      D
Sbjct: 292 LKLELNSKEFSLSNNNKSLGDVIVKNPIEIDGETIPISIGFSIDYMLRHLKSMQ-----D 346

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D V     +  S +  R  + +           F +++P+RI
Sbjct: 347 DVVKIGFIAEQSPLIFRNMNTED----------FKLMLPIRI 378


>gi|328885264|emb|CCA58503.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 376

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 79/360 (21%), Positives = 145/360 (40%), Gaps = 45/360 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++   + E +  A R++  ++ +PV   +LL+A DG L +     E      + A 
Sbjct: 11  MEFRIDSGVLTEAVAWAARVLPARSPMPVLGGLLLEATDGGLRVSGLDHEASARVEVEAD 70

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
             V G   V    L DI + L  G         EL   G  ++++ GD+ F L   P  +
Sbjct: 71  TAVEGRALVLGRRLLDICKVLPRGV-------TELAVEGARLSVTSGDARFGLSLLPLED 123

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+      V   ++        V +   A   ++    L GI   ++   + L   ATD
Sbjct: 124 YPAPPALPEVRG-QVDGDAFAAAVGQVAVAAGRDDSLPVLTGIRLALDGTTMTLA--ATD 180

Query: 178 GHRLAVAEVDIVAQI-AKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
            +R AV  ++   +     P+ ++VP K + EI R L+    + +++L +  +      L
Sbjct: 181 RYRYAVRTLEWKPEAGGGTPADVVVPAKRLTEIARSLAGAGPA-RLALDDGSVGFESGGL 239

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAVKLSL- 290
             + RL+DG  P +  +    +          L +AV RV+++    S V++     SL 
Sbjct: 240 RTTTRLLDGRLPRHDKLFALGDPALATTARAPLTEAVKRVAVVAEGDSPVQLAFTPTSLH 299

Query: 291 ---------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
                    +S +L  T+   D                + + FN  YLL+ +  + + EV
Sbjct: 300 LQAGYEDDIASQRLPATLTGADT---------------LTVAFNPGYLLDALTALDAPEV 344


>gi|213585141|ref|ZP_03366967.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 93

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 32/89 (35%), Positives = 55/89 (61%), Gaps = 2/89 (2%)

Query: 193 AKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
           A +PS  +IVPRK V E++R+L   ++ ++V +  + I  ++     + +L+DG FP+Y+
Sbjct: 5   ASLPSHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYR 64

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            V+P + DK L   C  L+QA  R +I+S
Sbjct: 65  RVLPKNPDKHLEAGCDILKQAFARAAILS 93


>gi|86739451|ref|YP_479851.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3]
 gi|86566313|gb|ABD10122.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3]
          Length = 433

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 89/368 (24%), Positives = 150/368 (40%), Gaps = 26/368 (7%)

Query: 28  PVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87
           P S   L  A   +L I A   E+ +   + ASVD  G + V   LL DIVR L     +
Sbjct: 77  PGSAAPLGAATASVLTICAYDTEVAVRAPVAASVDEPGRVLVPGRLLTDIVRSLP-ATTV 135

Query: 88  SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147
               +   G  + +  G   F +      E+P           E+ +    + V +   A
Sbjct: 136 DVVVD---GDRLVLRCGSVRFTVPLMDPGEYPQLPSFPGPIG-EVDTLGFASAVGQVAPA 191

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII-VPRKAVG 206
              +E    L  +   I+   L L  VATD +RLAV  +     +    ++  VP K + 
Sbjct: 192 AGRDETMPVLTAVRMEISGRGLAL--VATDRYRLAVRGIPWQPTVDDPWALAHVPAKVLA 249

Query: 207 EILRILSSKDSSVKVSL-----SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261
           E+ R  +S  S + + L     S +R+ L        VRLI+G FPNY+ ++P      L
Sbjct: 250 EVARTPTSA-SRIVIGLDLDDPSGARLGLAAGGRQTIVRLIEGTFPNYRKLLP--EAAAL 306

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPM 320
            V       A     +         ++ + + +++     +    +A E++ V Y    +
Sbjct: 307 VVTAQTAALAAAVRRVAVVATRTGPLRFTFTHNQVVAEAGDGGGAQASETIPVEYAGPEL 366

Query: 321 DICFNYKYLLEIIDNISSDEV----VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
            + FN  YLL+ +  +  D+     VDD+ V   +++     + G  KDS     ++   
Sbjct: 367 SVLFNPSYLLDGLGAVEDDQATIGFVDDDPV---EAAAKPAVLTG--KDSGRGAVDEGAY 421

Query: 377 FYVLMPMR 384
            Y+LMP+R
Sbjct: 422 RYLLMPIR 429


>gi|288561735|ref|YP_003429141.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
 gi|288548367|gb|ADC52249.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
          Length = 373

 Score = 69.3 bits (168), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 159/305 (52%), Gaps = 39/305 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKN------TIPVSC---HVLLQANDGLLEIKASGPEI 51
           MK+TV + ++L+ +    + I+         +I +      +LL  ++G+  I    P +
Sbjct: 1   MKLTVMKEELLKGIDAVSKAIKGSQQELVYKSIKIEATEKGILLTGSNGVFTIVRMIP-L 59

Query: 52  EITGAIPASVDVCGSITVSAHLLYDIVRKL--------QDGAQISFFKENELGTEVNISH 103
           E  G+  A++   G++ V+  +L + V+K+        Q+GA + F K  +   ++NI  
Sbjct: 60  EFKGSEIATLVNEGTVLVNGKILLEAVKKMPKEDIKIEQEGAVLKF-KSGKFQVKLNILT 118

Query: 104 GDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163
            D            +P+  E +   SF L  S+LK +++++ +A +T E R  LNG+   
Sbjct: 119 ED------------YPAPPEVDGA-SFTLEQSLLKQVLDQSVYACSTSEGRPILNGVKLS 165

Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           I++  + L  +AT+ + ++  + D+  +   +P+I++P   + E+  +L++ + + K +L
Sbjct: 166 IDQGIMNL--MATNSYIMSSLQKDLKNEELFLPNIVIPASPLNELQSLLATTEGT-KCTL 222

Query: 224 SESRIHLNI---ESLSM-SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           + S  HL I    +L++  +RL++G++P  +  IP ++  +++   ++L  +++RVS + 
Sbjct: 223 NCSEKHLLINISHNLTLVYIRLLEGQYPVDRQFIPKNHPIKVKSKRSDLFSSLERVSSLG 282

Query: 280 SVRIQ 284
           S  ++
Sbjct: 283 SEHVE 287


>gi|254304259|ref|ZP_04971617.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324451|gb|EDK89701.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 364

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 88/393 (22%), Positives = 177/393 (45%), Gaps = 39/393 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINRQKTIEIIGEYSNILKDNPVKPSLVGLFIQAKNNQVVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117
           ++  G + +   LL + + KL +G  I+F +++   +      S  D N Y    PE   
Sbjct: 61  IESEGQVLIKPALLLEYI-KLLEGENINFERKDGYLIVNNAEFSILDDNTY----PELTE 115

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             P     E    F ++   +K L   T+ + +T+ +   +  IF     +D  L  V+T
Sbjct: 116 IIPIVIASENTVKFTMSLEKVKFL---TNSSASTDTLFNSIKMIF-----KDNILELVST 167

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  RL   + ++   I K   I+VP  ++G + +I    D    ++ S+ R+ +  +   
Sbjct: 168 DSFRLIYMKKELNNTINK--DILVPGDSIGVLYKIFKDLDEEFSLAASDDRLIVTWKDAY 225

Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLSS 292
            + +L+   FP+++++I  +N DK    N   L  A+ +   V+  SS        +   
Sbjct: 226 FTCKLLSLSFPDFRSLINNTNHDKRFEFNREELNLALKKVISVTKNSSDSKNVATFNFKG 285

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++L ++  + +  K  + +N+  +   + +  N KY+ E IDN      VD  ++  +D+
Sbjct: 286 NQLLISGVSAN-AKINQKVNMIKSGEDLKLGMNCKYIKEFIDN------VDKNII--IDA 336

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 337 TNSSSMLRFMEEGNE-------NYIYLIMPVNI 362


>gi|260889707|ref|ZP_05900970.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254]
 gi|260860313|gb|EEX74813.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254]
          Length = 375

 Score = 68.9 bits (167), Expect = 1e-09,   Method: Compositional matrix adjust.
 Identities = 80/390 (20%), Positives = 168/390 (43%), Gaps = 28/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           + I V+R  +L+ +      +       V   + ++ N+G   ++ +  E+ I   I A 
Sbjct: 2   LHIIVDRKSLLKAITIVENAVTENKIREVLSGIYIETNEGKAILRGTDLELSINTEIEAQ 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I +   L+ + ++++ D  +I+  +EN    ++ I    +N     +    FP 
Sbjct: 62  VEDEGKIVIKHKLIEEFLKQISD-EKITLIEEN---GKLVIQASSTNTEFSLYDAGNFPV 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E    +      L N +E    + +       +N I   I E+ LKL  V++D +R
Sbjct: 118 QSKLENGVEYVFEKEKLLNNIENVKISASPNPENLAVNCIRLEIEEDKLKL--VSSDTYR 175

Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
           L   E D+    Q  +  S+ +P K +  +++I+   D  ++ V    S++     ++ +
Sbjct: 176 LTYIEEDLDETQQGKENLSLSIPLKTIDGLIKIMKLIDEENITVKSDGSKVFFQFSNVEI 235

Query: 238 SVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAVK---LSLSSD 293
             R ID +FP+Y++++  S ++K++ +N  +    + R +I      +A      + +++
Sbjct: 236 LTRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLRRTAIFVRDNKEAKNGGIFNFANN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           KL +T    +  +  E +        + I  N ++LL+ I  I          V  L ++
Sbjct: 296 KLLLT-GTSENAQIKEEIVTIQEGADLKISLNVRFLLDYISTIEG-----KVTVLELLNN 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             SV +R +D D          + Y  MP+
Sbjct: 350 KGSVIVRDEDNDK---------SLYFTMPL 370


>gi|113473946|ref|YP_720007.1| DNA polymerase III subunit beta [Trichodesmium erythraeum IMS101]
 gi|110164994|gb|ABG49534.1| DNA polymerase III, beta subunit [Trichodesmium erythraeum IMS101]
          Length = 200

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 47/194 (24%), Positives = 101/194 (52%), Gaps = 24/194 (12%)

Query: 200 VPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           +P KA+ E+ R++S     SSV +   E+++   +    ++ R ++G++P YQ ++P   
Sbjct: 21  IPAKALREVERMISMGKSGSSVTLKFDENQVIFELGKQRLTSRKLEGQYPAYQQLLPNQF 80

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYY 315
             ++ V+      AV+R+++++  +   +K ++ S   ++ ++VD  D+G   ESM    
Sbjct: 81  TNQINVDRKKFLGAVERIAVLADQKNNILKCTIDSVNQEISLSVDAQDVGSGRESMAAQI 140

Query: 316 -NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
            ++ P +I FN KYL+E +  I S      E+  +L+++ + V +            N +
Sbjct: 141 SSDEPEEIAFNVKYLIEGLKAIPS----ASEISIQLNTATTPVVL------------NPL 184

Query: 375 NAF---YVLMPMRI 385
             F   Y++MP+++
Sbjct: 185 GGFQMTYLIMPVQL 198


>gi|330947989|gb|EGH48301.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 112

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 33/107 (30%), Positives = 65/107 (60%)

Query: 210 RILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           R+L+ +D +V + L +  I       + + +L+DG+FP+Y+ V+P   DK +  +   LR
Sbjct: 2   RLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQALR 61

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
           +A  R +I+S+ + + ++L L+S +L +  +NP+  +A E ++V YN
Sbjct: 62  EAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYN 108


>gi|237745013|ref|ZP_04575494.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
 gi|229432242|gb|EEO42454.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
          Length = 381

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 99/413 (23%), Positives = 179/413 (43%), Gaps = 62/413 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R + L  +    + ++     P+   +  +  D   +I  +G  ++ T  I  S
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDN--KIYFTGTNLDTT--IKTS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107
           +DV      G I  S  ++ + +++++D           I F +  +  TE ++      
Sbjct: 57  IDVDEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161
              + +P + F +    E  + FE+ S  L N+ E+  F+  T +      IR  +  I 
Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNIAMNCIR--IESIL 167

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220
            H       L  V+T+ +RL   + +I   I+   S+ VP   +  I++I+   D+ V K
Sbjct: 168 KH-------LHFVSTNTYRLTFLKKNIDKDISDF-SVSVPADTISSIIKIIKGLDNEVIK 219

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279
           V   E+ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S
Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279

Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
               ++   S         +K  MT+    ++ +  E ++V +    + I  N KYLLE 
Sbjct: 280 RSNSESKYSSTYEFKHNEKNKGIMTISALNEIARINEELDVNFEGEDLKISLNSKYLLEF 339

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I NIS ++    E+V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|303246809|ref|ZP_07333086.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ]
 gi|302491826|gb|EFL51706.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ]
          Length = 396

 Score = 68.6 bits (166), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 86/414 (20%), Positives = 179/414 (43%), Gaps = 59/414 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V R+DI++ L  +  II  K        + L+A   +L I ++   +E TG   A 
Sbjct: 1   MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAAGDVLRILSTDSSLEFTGQYAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           V   G   V     +++VRKL  G +I    + E G  + I  G   +        + Q+
Sbjct: 61  VTEEGLCGVQGKSFFELVRKLPPG-EIGLTLDAESGN-LLIKQGSRRYKLPVSDRNWFQN 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH-INEEDLKL 171
           F  S FP    EE   ++  +   L+ L++R  + ++ E+    +  +F    +E  +++
Sbjct: 119 F--SPFP----EEGAVTW--SGDFLQELIDRVAYCISDEDTMEAMACMFLKPADEAKVEV 170

Query: 172 CAVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           C +  +GH+ ++     D +  +     I++ +K V E+ R L++ +  +++++S+ R+ 
Sbjct: 171 CGL--NGHQFSLVGFLNDDIHTMLPAEGILIQKKYVAELKRWLTADE--IELAISQKRLF 226

Query: 230 L--------------NIESLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAV 272
                           IE+ S+ +     ++P+Y   +          L +N   L  A+
Sbjct: 227 FRTQEKDPENEAATPKIETFSLPLSYY--QYPDYNTFVSKLATDGVSTLAINRDELMDAL 284

Query: 273 DRVSIMSSVRIQ-AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           +RV+I ++   + A  L    ++L +     + G+A E++   +      + F  K LL+
Sbjct: 285 ERVAIFNTDNNRCAYFLFDGPNELSLRSQGQEAGEATETLECAFTGSLDKVAFPTKDLLD 344

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +  S      +V   +  +     I G++           +   ++MPM+I
Sbjct: 345 ILGHFHS-----PKVTLAMTGAEGPCGITGEEDG---------DGLVIIMPMKI 384


>gi|269114779|ref|YP_003302542.1| DNA polymerase III subunit beta [Mycoplasma hominis]
 gi|268322404|emb|CAX37139.1| DNA polymerase III beta chain [Mycoplasma hominis ATCC 23114]
          Length = 365

 Score = 68.2 bits (165), Expect = 2e-09,   Method: Compositional matrix adjust.
 Identities = 74/340 (21%), Positives = 158/340 (46%), Gaps = 20/340 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI----EITGA 56
           MK+ +++  +   +    + ++    +PV   +L+QA D  + +  S  E     EI  +
Sbjct: 1   MKLKIDKLLLDNAIERVSKSVDANPFLPVMKGILIQAEDNKITLIGSNGETSIKHEIETS 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           I A +++ G + V   L  +I++KL DG  +     N L     IS  + N+ L  +  +
Sbjct: 61  IDAQIELPGIVLVELSLFKNIIKKL-DGEIVLEVVNNILK----ISTNNENYNLNIYDVN 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+ +     Y    ++  +  K+LV    FA +T E+   L  +  +I+  + K+  + T
Sbjct: 116 EYIAIDFACYGEQVKINWNDFKSLVRDVIFAASTNEVSLILCCV--NISAANKKIKFITT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIES 234
           D  R A A  DI   +    SI+         LR +++ D    V +++S+ +I   ++S
Sbjct: 174 DRFRYAQAVQDISEDVTFNISILAKN------LRDITNFDYNGDVILNISDQKISFKLDS 227

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++  +++D  + +   ++P   D EL++    L   +++ S++ +     +KL +  + 
Sbjct: 228 TTIESKVVDQLYQDVSRIVPQEFDTELKITKKELNNLLNKASVIINENYNKIKLHIVDNV 287

Query: 295 LCMTVDNPDMGKA-IESMNVYYNECPMDICFNYKYLLEII 333
           L ++    ++  A I++ N  YN   + +  N ++L + I
Sbjct: 288 LTISSAREEIANAEIKTNNFSYNGEELKLALNSRFLKDAI 327


>gi|68171371|ref|ZP_00544765.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999196|gb|EAM85852.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
          Length = 113

 Score = 67.8 bits (164), Expect = 3e-09,   Method: Compositional matrix adjust.
 Identities = 38/111 (34%), Positives = 65/111 (58%), Gaps = 4/111 (3%)

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           +  +T FA++ EE R+ LNG+  H++  +  LC  ATDGHRL++ ++     +     II
Sbjct: 1   MFGKTKFAISIEESRFNLNGL--HVHTSNNILCCAATDGHRLSLTKLSQSQNVLSNFGII 58

Query: 200 VPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
           VP+K V EIL+I+S  S +  + +SLS+ +I    +   +  ++ID  F +
Sbjct: 59  VPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTFAS 109


>gi|302561988|ref|ZP_07314330.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000]
 gi|302479606|gb|EFL42699.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000]
          Length = 365

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 62/274 (22%), Positives = 111/274 (40%), Gaps = 28/274 (10%)

Query: 115 ESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           + E P T   EE      L+ S L   ++   FA  T+     L GI F +  ED  LC 
Sbjct: 115 DRENPMTSLSEETAVRLSLSGSALAAALDAVRFAAGTDPGLPMLGGILFDV--EDGALCL 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD +R+AVA+            + VP   + + +R L   D  V++S+   R+ L   
Sbjct: 173 VATDRYRMAVAQAAAEGPAGSRVRVTVP-LPLADAMRALLEGDDPVRLSVDGDRVTLETG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQ-AVKLSLS 291
               + + +  +FP+Y+ ++     +   V+    R+AV    + +  VR Q      L+
Sbjct: 232 DRQTAGQCLGHDFPDYRRLVRLPAGRRAPVDVPAFREAVRTGPVRTGEVREQDGAPCDLT 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++         G   E  ++        +  N  +LLE +   +      D +V  + 
Sbjct: 292 VLEVAADGSVAPAGDGAEGRDL--------VAVNRDFLLEALPAGAG-----DRLVLEIG 338

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + + IR         + +  + F +LMP+R+
Sbjct: 339 DPTAPLAIR---------RPDDADTFSILMPVRL 363


>gi|19551252|ref|NP_599254.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC
           13032]
 gi|62388895|ref|YP_224297.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC
           13032]
 gi|145294045|ref|YP_001136866.1| DNA polymerase III subunit beta [Corynebacterium glutamicum R]
 gi|21322767|dbj|BAB97396.1| DNA polymerase III beta subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|41324228|emb|CAF18568.1| DNA POLYMERASE III, BETA SUBUNIT [Corynebacterium glutamicum ATCC
           13032]
 gi|140843965|dbj|BAF52964.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 394

 Score = 67.4 bits (163), Expect = 4e-09,   Method: Compositional matrix adjust.
 Identities = 88/396 (22%), Positives = 168/396 (42%), Gaps = 28/396 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           V R D++  +    R +  K T PV   +L+ A+D  LE+     ++     + A V   
Sbjct: 10  VAREDLVTAVAWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYDVSTRVRLSAEVSQP 69

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I V+  LL +I   L +   + F  +   G++  ++ G S F L   P  ++P   + 
Sbjct: 70  GRIAVAGKLLSEITGSLPN-KPVDFRID---GSKAFVTCGSSRFELPLIPLDDYPMLPKL 125

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
               +  + + +    V +   A   ++    L G+   I    + L   ATD  RLA+ 
Sbjct: 126 P-AGTGSINAKLFTEAVSQVASAAGKDDSLPMLTGVSMEIVGNQINLA--ATDRFRLALR 182

Query: 185 EVDIVAQIAKMP-SIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIESL 235
             +  A   ++   +++P + + +  R L S  + S+ +++        E    ++ ++ 
Sbjct: 183 TFEWEANDPELNVKLLIPARTLLDNARSLDSGLNDSIDIAVGTGDQVGREGLFGVHTDNR 242

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL+D +FPN   ++P  +     V    L  A+ RVS+++    Q V L  S  ++
Sbjct: 243 ETTTRLLDADFPNIAPLLPKEHTAIASVEIAPLVDAIRRVSLVAERNAQIV-LHFSEGQV 301

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL-DSSN 354
            +T    + G A E++   +    + I FN  YL    D +S   V     VF   + S 
Sbjct: 302 ILTAGATEAGHAEETLPCAFTGKELTIAFNPGYLK---DGLSV--VPTSRAVFGFTEPSR 356

Query: 355 SSVFIRGKDKDSKNNKDNKVNA-----FYVLMPMRI 385
            ++ I   ++    N++           Y+LMP+R+
Sbjct: 357 PAIMIPEPEEMPSANENGIFQTPDTYFTYLLMPVRL 392


>gi|325066320|ref|ZP_08124993.1| DNA polymerase III subunit beta [Actinomyces oris K20]
 gi|326772842|ref|ZP_08232126.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505]
 gi|326637474|gb|EGE38376.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505]
          Length = 376

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 92/394 (23%), Positives = 168/394 (42%), Gaps = 31/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + E +    R +  +  +PV   V L+A    L + +   E+     + A 
Sbjct: 1   MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           V+  G + VS  LL DI + L +       K  +L   G +V +S G + F L +    +
Sbjct: 61  VEEDGVVLVSGRLLADIAKALPN-------KPVDLEVEGNKVAVSCGSARFSLAAMAADD 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+      V +  + +  L   V +   A + ++    L  +   I  E   L  +ATD
Sbjct: 114 YPALPVMPAV-AGTIDAHDLARAVGQVSIAASRDDTLPLLTSV--QIEVEGSSLVLMATD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRIL-SSKDSSV---KVSLSESRIHLNI 232
            +RLA+ E+       ++ +  ++  + + ++ + L SS D +V     S + S I    
Sbjct: 171 RYRLAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEA 230

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                +  L DG++P  + + P S      V    L  AV RVS+++  R   + +S + 
Sbjct: 231 GGRRTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVAD-RSTPIHMSFTQ 289

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L +     D  +A E +  +     +   FN  YLL+ +  ++   V       RLD 
Sbjct: 290 GNLELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALNQPYV-------RLDF 342

Query: 353 SNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +++S    + G D      +D+     Y+LMP+R
Sbjct: 343 THASKPAVLTGMDS-IGGTEDSSFR--YLLMPIR 373


>gi|218291395|ref|ZP_03495338.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238750|gb|EED05966.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1]
          Length = 249

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 55/220 (25%), Positives = 107/220 (48%), Gaps = 8/220 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +   L    RI + +    V   VL++A  G + + A   ++ +   + AS
Sbjct: 1   MRCLMEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGRVTLSAYDYDVALRMTVEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A L  ++VR+L  G   I+    + L   +++  G ++  L  F  +EFP
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDV--GTTHAELHGFDPAEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDG 178
              +   +   E+++  L   ++   +A A ++  R  L G++  +  ED KL  +ATDG
Sbjct: 119 VLPDMTGIAPVEISAKTLVEAIQSVGYAAAKQDASRPILEGVY--VGYEDGKLIWMATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218
            RLA     +  +++   +I  PR+A+ E+ R+L + D +
Sbjct: 177 LRLAKVSQTVDREMSIRCTI--PRRALTELTRLLDADDDA 214


>gi|303326104|ref|ZP_07356547.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864020|gb|EFL86951.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 384

 Score = 67.0 bits (162), Expect = 5e-09,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 179/401 (44%), Gaps = 44/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV +  I+E L  A  II  K        + L+A +G L + ++   IE TG  PA 
Sbjct: 1   MKLTVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEEGSLAVMSTDANIEFTGRYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN------ELGTEVNISHGDSNFYLQSFP 114
           V   G I V      D+VR+L  G       E       E G  V       + + Q+F 
Sbjct: 61  VSQPGLIGVQGRAFVDLVRQLPTGVLNLTLDEASGNLLLEQGRRVYKLPVSGSEWFQNF- 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCA 173
            SEFP      +   F      L++++++  F ++ ++    +  +     E   + +C 
Sbjct: 120 -SEFPVENAVTWSGDF------LQDVLDKVAFCISDDDAMDAIACLCMKPGENGHIDVCG 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHL- 230
           +  +GH+ A+         A++P+  +++ +K + +I + L + +  +++++++ R++L 
Sbjct: 173 L--NGHQFALVSFTHDDLAARLPAEGMLIQKKYLQDIKKWLGADE--IELNITDKRLYLR 228

Query: 231 ---NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD---RVSIMSSVRIQ 284
                E+LS+       E+P+Y   +    D+ +     + ++ +D   R+ I ++   +
Sbjct: 229 SLDGAETLSLPRAAY--EYPDYNIFMGKLADEGVNSMTLDRKEGMDALGRILIFNTESDR 286

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
              + LS+++  ++    D+G A ES+ V Y      I F  + LL+++ +      V  
Sbjct: 287 CTYMDLSANEARLSAQGQDVGSASESLEVAYKGDIARIAFPTRNLLDVLGHF-----VSA 341

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   L  +     IRG +     + D  V    ++MPM++
Sbjct: 342 KIDMLLTGTEGPCGIRGPE-----DPDYTV----IIMPMKV 373


>gi|392772|gb|AAC43045.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15]
          Length = 96

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 32/96 (33%), Positives = 59/96 (61%)

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           +IVPRK + E  R++ S   +V + +S  ++     + +++ ++IDG FP+Y  VIP  N
Sbjct: 1   VIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALTSKVIDGAFPDYMRVIPRDN 60

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            K L ++     +AVDRV+ +S+ + ++VKL++  D
Sbjct: 61  AKILTLDNDLFAKAVDRVANISAEKSRSVKLAVEPD 96


>gi|126658731|ref|ZP_01729876.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
 gi|126619993|gb|EAZ90717.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
          Length = 391

 Score = 66.6 bits (161), Expect = 6e-09,   Method: Compositional matrix adjust.
 Identities = 87/416 (20%), Positives = 180/416 (43%), Gaps = 59/416 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M I+   + +++ L  A ++I    T  +  +V+L+A   +L+++A   +I ++  +  A
Sbjct: 1   MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQS 112
           +++  G + V+      ++  L+D   I+   + E        G E   + GD    ++ 
Sbjct: 61  NINTPGEVAVNCKDFLTLLNTLKDEVAITLSADEEYLHLKSQQGKEAKFAKGD----IEE 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKL 171
            P   +  +  EE +    + +  L   VE T +A+ATE  +  L G+  + + +E+  +
Sbjct: 117 MP---WIDSLTEEEIEQVSIEADDLIQAVEETKYAVATEMAKAILCGVCLNFDTDEENTV 173

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSS------VKVSL 223
              ATDGHRLA   V +       P   +++P + +      L   ++S      V +S 
Sbjct: 174 EFAATDGHRLARTRV-LYEPSENNPENKLVMPTETLTLTAYALKQMETSEEIAEMVTISF 232

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT-NLRQAVDRVSIMSSVR 282
            E++I ++     +  R +DG++P+Y+ +I   N  +  ++CT N +Q ++ +  + +  
Sbjct: 233 DENKIQVDFSEGFIRSRKLDGKYPDYEMLI---NGDDFSLDCTFNRKQLLEALKFIDT-- 287

Query: 283 IQAVKLSLSSDKLCMTVDNPD------------MGKAIESMNVY-YNECPMDICFNYKYL 329
                 ++  D LC    +P+             G A +++ V   N     + FN  YL
Sbjct: 288 -----FAVGKDSLCFIDFDPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNSNYL 342

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +  +  D  V  E+          VFI   +         +   F ++MP++I
Sbjct: 343 KQCLKAMPGD-TVTMEITETTGDQPGPVFISPLE---------EYKTFGLVMPIQI 388


>gi|320532812|ref|ZP_08033589.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134963|gb|EFW27134.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 376

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 91/393 (23%), Positives = 169/393 (43%), Gaps = 29/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + E +    R +  +  +PV   V L+A    L + +   E+     + A 
Sbjct: 1   MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESE 117
           ++  G + VS  LL DI + L +       K  +L   G +V +S G + F L +    +
Sbjct: 61  IEEDGVVLVSGRLLADIAKALPN-------KPVDLEVEGNKVAVSCGSARFSLAAMAADD 113

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+      V +  + +  L   V +   A + ++    L  +   I  E   L  +ATD
Sbjct: 114 YPALPVMPTV-AGTIDAHDLARAVGQVSIAASRDDTLPLLTSV--QIEVEGSSLVLMATD 170

Query: 178 GHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRIL-SSKDSSV---KVSLSESRIHLNI 232
            +RLA+ E+       ++ +  ++  + + ++ + L SS D +V     S + S I    
Sbjct: 171 RYRLAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEA 230

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                +  L DG++P  + + P S      V    L  AV RVS+++  R   + +S + 
Sbjct: 231 GGRRTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVAD-RSTPIHMSFTQ 289

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L +     D  +A E +  +     +   FN  YLL+ +  ++   V       RLD 
Sbjct: 290 GNLELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALNQPYV-------RLDF 342

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAF-YVLMPMR 384
           +++S        DS    ++  ++F Y+LMP+R
Sbjct: 343 THASKPAVLTGMDSIGGTED--SSFRYLLMPIR 373


>gi|255021959|ref|ZP_05293967.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254968595|gb|EET26149.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 401

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 75/348 (21%), Positives = 142/348 (40%), Gaps = 50/348 (14%)

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
           A  L  I + L DGA + F      G +  I  G S F L  +  +++P   E       
Sbjct: 69  ARDLERIAKSLPDGALVEF------GEQGQIRCGRSRFRLPVYDGAQYPVKAEPLPSAWI 122

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAV-ATDGHRLA---- 182
            + +  L+ +       +A  + R YLNGI + I    E++  L  + ATDGHR A    
Sbjct: 123 RVQTQDLERIFPSLRRCVAKNDTRTYLNGIHWQIRRVGEQEASLLVLEATDGHRAARFSL 182

Query: 183 --------------VAEVDIVAQIAKMPS---IIVPRKAVGEILRIL-SSKDSSVKVSLS 224
                          ++ D   Q    P     I+P + +   +++L S K +   ++ +
Sbjct: 183 EYTPPLDSANDDSAASQGDCSPQGDCSPQGLDAILPVEGLSAWMKLLYSQKIAEFSIAQT 242

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVR 282
            S +      L + +  +DG +P+   ++     ++  L ++  + ++A+   +I     
Sbjct: 243 RSGVIFQGGGLRLWLTSLDGRYPSLDTILAQLEKRKDVLSLSIADFQRALTLATIGVG-E 301

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNI----- 336
            QAV LS + D L       +  +A + +   +    P+   FN +YL++ +D++     
Sbjct: 302 SQAVTLSTAPDHLLSVAAKGEERQAEDQIPAQWSGSLPLRYSFNVQYLMDFVDSVKETTK 361

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S++  D ++  R D S         +KD  +          V+MP+R
Sbjct: 362 GSEDTEDPQMALRFDVS---------EKDPTSTFAEVPGGVLVVMPIR 400


>gi|260494790|ref|ZP_05814920.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
 gi|260197952|gb|EEW95469.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
          Length = 381

 Score = 66.6 bits (161), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 62/413 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R + L  +    + ++     P+   +  +  D   +I  +G  ++ T  I  S
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDN--KIYFTGTNLDTT--IKTS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107
           +DV      G I  S  ++ + +++++D           I F +  +  TE ++      
Sbjct: 57  IDVDEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161
              + +P + F +    E  + FE+ S  L N+ E+  F+  T +      IR  +  I 
Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNIAMNCIR--IESIL 167

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220
            H       L  V+T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V K
Sbjct: 168 KH-------LHFVSTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDNEVIK 219

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279
           V   E+ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S
Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279

Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
               ++   S         +K  MT+    ++ +  E ++V +    + I  N KYLLE 
Sbjct: 280 RSNSESKYSSTYEFKHNEENKGTMTISALNEIARINEELDVNFEGEDLKISLNSKYLLEF 339

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I NIS ++    E+V     SNS+V +  K+ D            Y+LMP+ +
Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKNNDE---------YIYILMPLAL 379


>gi|313635491|gb|EFS01728.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067]
          Length = 196

 Score = 66.2 bits (160), Expect = 7e-09,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 90/162 (55%), Gaps = 7/162 (4%)

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   ++ L    RL++G
Sbjct: 3   EIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLEG 62

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDNP 302
            +P+   +IP     EL +N     QA+DR S+++   R   +KL +L + ++ ++ ++P
Sbjct: 63  SYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLITLDNGQVEVSSNSP 122

Query: 303 DMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           ++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 123 EVGNVSE--NVFSQSFTGEEVKISFNGKYMMDALRAFEGDDI 162


>gi|332829045|gb|EGK01709.1| hypothetical protein HMPREF9455_01857 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 212

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 48/185 (25%), Positives = 92/185 (49%), Gaps = 6/185 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           I++ +S++L  L    +II  KNT+ +  ++LL   DG ++  A+  +  I  +I   + 
Sbjct: 4   ISISKSELLNRLQSVSKIISPKNTLLIMDNILLNIQDGTVKFSATDTQGRINTSIDGILT 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D   S+ +   LL + ++ L +   ++   +++  T +    G   F L       FP  
Sbjct: 64  DNNISVCIEPKLLIEALKTLPE-QPLAISIDDKFSTTIKYKGG--KFELVGISPEGFPKE 120

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           K+     S  + S VL N +E+T    +T+++R  +  ++  I EE +    VA+DGH+L
Sbjct: 121 KDITNAKSISIPSKVLLNGIEKTILCASTDDLRPIMTSVYLSIAEEQINF--VASDGHKL 178

Query: 182 AVAEV 186
           A+ E+
Sbjct: 179 ALLEI 183


>gi|237741560|ref|ZP_04572041.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|294785822|ref|ZP_06751110.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
 gi|229429208|gb|EEO39420.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|294487536|gb|EFG34898.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
          Length = 381

 Score = 66.2 bits (160), Expect = 8e-09,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 62/413 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R + L  +    + ++     P+   +  +  +   +I  +G  ++ T  I  S
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107
           +DV      G I  S  ++ + +++++D           I F +  +  TE ++      
Sbjct: 57  IDVNEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161
              + +P + F +    E  + FE+ S  L N+ E+  F+  T +      IR  +  I 
Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNIAMNCIR--IESIL 167

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220
            H       L  ++T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V K
Sbjct: 168 KH-------LHFISTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDNEVIK 219

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279
           V   E+ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S
Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279

Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
               ++   S         +K  MTV    ++ +  E ++V +    + I  N KYLLE 
Sbjct: 280 RSNSESKYSSTYEFKHNEENKNKMTVSALNELARINEELDVNFEGEDLKISLNSKYLLEF 339

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I NIS ++    E+V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|256844895|ref|ZP_05550353.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718454|gb|EEU32009.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
          Length = 381

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 98/413 (23%), Positives = 178/413 (43%), Gaps = 62/413 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R + L  +    + ++     P+   +  +  +   +I  +G  ++ T  I  S
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107
           +DV      G I  S  ++ + +++++D           I F +  +  TE ++      
Sbjct: 57  IDVNEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSA--- 113

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE------IRYYLNGIF 161
              + +P + F +    E  + FE+ S  L N+ E+  F+  T +      IR  +  I 
Sbjct: 114 ---EDYPNT-FENVVLNENNFKFEMPSQDLVNIFEKVLFSADTSDNIAMNCIR--IESIL 167

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-K 220
            H       L  ++T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V K
Sbjct: 168 KH-------LHFISTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDNEVIK 219

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMS 279
           V   E+ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S
Sbjct: 220 VYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFS 279

Query: 280 SVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
               ++   S         +K  MTV    ++ +  E ++V +    + I  N KYLLE 
Sbjct: 280 RSNSESKYSSTYEFKHNEENKNKMTVSALNELARINEELDVNFEGEDLKISLNSKYLLEF 339

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I NIS ++    E+V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 340 IQNISKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|283852477|ref|ZP_06369745.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B]
 gi|283572085|gb|EFC20077.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B]
          Length = 392

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 81/418 (19%), Positives = 176/418 (42%), Gaps = 71/418 (16%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V R+DI++ L  +  II  K        + L+A DG+L I ++   +E TG   A 
Sbjct: 1   MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAVDGVLRILSTDSSLEFTGQYTAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG---------------- 104
           V   G   V     +++VR+L  G         E+G  ++ + G                
Sbjct: 61  VTEAGLCGVQGKSFFELVRRLPPG---------EIGLTLDAASGNLLIKQGSRRYKLPVS 111

Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164
           D N++ Q+F  S FP      +   F      L+ L++R  + ++ E+    +  +F   
Sbjct: 112 DRNWF-QNF--SPFPEGAAVTWSGDF------LQELIDRVAYCISDEDTMEAMACMFLKP 162

Query: 165 NE-EDLKLCAVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV 221
            E   +++C +  +GH+ ++     D +  +     I++ +K V E+ R L++ +  +++
Sbjct: 163 AEAAKVEVCGL--NGHQFSLVAFLNDDIHAMLPPEGILIQKKYVAELKRWLTADE--IEL 218

Query: 222 SLSESRIHL----------NIESLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNL 268
           ++S+ R+             +E+ S+ +     ++P+Y   +          L ++   L
Sbjct: 219 AISQKRLFFRTQEKDETSAKVETFSLPLSYY--QYPDYNTFVSKLATDGVSTLTIDRLEL 276

Query: 269 RQAVDRVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327
             A++RV+I ++   +          +L +     + G+A E++   +      + F  K
Sbjct: 277 VDALERVAIFNTDNNRCASFLFDGPGELSLRSQGQEAGEASETLECAFTGSLDKVAFPTK 336

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +++I+ +  S      +V   L  +     I G++           ++  ++MPM+I
Sbjct: 337 DIIDILGHFHS-----PKVTLTLTGAEGPCGIAGEE---------DADSLVIIMPMKI 380


>gi|85057282|ref|YP_456198.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789387|gb|ABC65119.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 378

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 83/379 (21%), Positives = 169/379 (44%), Gaps = 27/379 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + + +   LE L    +I+ +K   P+   + +Q  +  L ++A+   I I   I   
Sbjct: 1   MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENKLILEANNGNIAIKIEIKDK 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFY-LQSFPE 115
              +   G I        +I++K+ D   +I+  + N L  +            + +F E
Sbjct: 61  SLKIKKQGKIACLGRYFIEIIKKINDSLIKITVMENNFLVIKTIFCEYKLKLMDVCNFLE 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            +F   K +     F++ +   KN+++  + + +  E R  L G+        LK C  A
Sbjct: 121 LDFSFQKLD----FFQIETHFFKNIIKEVNISTSKNEKRPILMGLNLIYQNNLLKAC--A 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234
           TD  R++  ++++  +     +I++P K++ E+ +IL   +   +K+     +I L I++
Sbjct: 175 TDFFRMSQKKINLDIKYHNF-NIVIPNKSLEELSKILEHCQSKHLKIYSDAQKIFLEIDN 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLS 291
           L     L++G +P  Q +   +    + +N  +L +A++RVS++     +    +K  L+
Sbjct: 234 LWFQTSLLEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFYKEQINTNVIKFILT 293

Query: 292 S-DKLCMTVDNPDMGKAIES---MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             + + ++  +  +G A+E    + V  N     I FN KYL +++  +S       EVV
Sbjct: 294 ERNSIEISSSSESLGTALEKIIPLKVSANS--FQIAFNAKYLEDVLKVLSV-----KEVV 346

Query: 348 FRLDSSNSSVFIRGKDKDS 366
           F  D+      I   +KDS
Sbjct: 347 FYFDNPLKPFIITTLEKDS 365


>gi|94987228|ref|YP_595161.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731477|emb|CAJ54840.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 383

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/401 (21%), Positives = 177/401 (44%), Gaps = 44/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + + +  I++ L     II  ++       + ++A    L I A+   IE  G   A 
Sbjct: 1   MLLYINKEHIIDGLQKVANIIPARSGAAYLRTLWMKAEHSTLTIMATDANIEFIGNYEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ--------DGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +   G + V+   L D++R+L         D    +   E E  T   +   D  ++   
Sbjct: 61  IKETGLVGVNGRNLIDLIRRLPAKELCLRFDSTSGTLILEQERRT-YKMPINDPIWFQ-- 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKL 171
            P + FPS  EE  V+S    +   + +++R  F ++ +E    ++ ++    N+  + +
Sbjct: 118 -PLTLFPS--EESVVWS----ADFFQEVIDRVSFCISDDEGSDAISCLYIQPSNDNYINV 170

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           C +  +GH+ A+          K+PS  I++P+K + E+ + L   ++ ++++++E R  
Sbjct: 171 CGL--NGHQFALTRFINNELSEKIPSEGILIPKKYITELRKWLG--ETEIEIAITEKRFF 226

Query: 230 L-NIESL-SMSVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
              I+S  ++SV      +P+Y   +      N   L++   +  +++DR+SI ++   +
Sbjct: 227 ARTIDSKETISVPRAIFTYPDYTAFLTRLTGDNMSFLKLQRKDCLESLDRISIFNTEGDR 286

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
                +  ++L ++    D G A E ++V Y      I F  K L+EI ++  S      
Sbjct: 287 CTYFDIKENELILSAQGQDTGSANEYLDVTYTGNINKIAFPTKSLMEIFNHFES-----P 341

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   + S      I G D+D    KD  V    ++MPM+I
Sbjct: 342 TITLAMSSVEGPCGITG-DED----KDYTV----IIMPMKI 373


>gi|239943012|ref|ZP_04694949.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|239989470|ref|ZP_04710134.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           11379]
 gi|291446484|ref|ZP_06585874.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|291349431|gb|EFE76335.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
          Length = 383

 Score = 65.9 bits (159), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 82/348 (23%), Positives = 144/348 (41%), Gaps = 32/348 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ----ANDGLLEIKASGPEIEITGA 56
           M+  +ERS + E +  A R++  ++ +PV   +LL     A DG L I  SG + E +  
Sbjct: 1   MEFRIERSALTEAVSWAARVLPVRSPVPVLGGLLLDTGSGAGDGRLRI--SGLDYEASAR 58

Query: 57  I--PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           I   A V   G + V    L DI + L DG      +    G+   +S   + F L   P
Sbjct: 59  IDVEAEVPRPGKVLVMGRRLLDICKVLPDGPVECAVE----GSRFTVSGDGARFGLSVLP 114

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P+      V    + + +    V     A   ++    L GI   ++ + + L A 
Sbjct: 115 LDDYPALPPLPQVRG-AVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAA- 172

Query: 175 ATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
            TD +R AV  V   A    +   ++V  + + EI R L  +   V V+L          
Sbjct: 173 -TDRYRFAVRTVPWKATAPGESADVLVSARRLTEIARSLG-RSGLVSVALDAGSAGFEHA 230

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            +  +VRL++G  P ++ +    +     V+   L +AV RVS+++  R   V+++ S  
Sbjct: 231 GMRTTVRLLEGRLPRHEKLFAMEDPAVAVVDRARLTEAVKRVSVVAD-RDSPVQMTFSRT 289

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECP--------MDICFNYKYLLEII 333
              +T+      +A    +V     P        + + FN  YL + +
Sbjct: 290 DASVTL------RAGYEDDVASQRLPAALEGAEELTVAFNPAYLADAL 331


>gi|172054952|ref|YP_001806279.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142]
 gi|171701233|gb|ACB54213.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142]
          Length = 391

 Score = 65.5 bits (158), Expect = 1e-08,   Method: Compositional matrix adjust.
 Identities = 88/419 (21%), Positives = 178/419 (42%), Gaps = 65/419 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M I+   + +++ L  A ++I    T  +  +V+L+A   +L+++A   +I ++  +  A
Sbjct: 1   MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-------GTEVNISHGDSNFYLQS 112
           +++  G + V+      ++  L+D   I+   + E        G E   + GD    ++ 
Sbjct: 61  NINTPGEVAVNCKDFLTLLNSLKDEVAITLSSDEEYLYLKSQQGKEAKFAKGD----IEE 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKL 171
            P   +  +  EE +    + +  L   VE T +A ATE  +  L G+  + + +E+  +
Sbjct: 117 MP---WIDSLTEEEIEQVSIEADDLIQAVEETKYAAATEMTKAILCGVCLNFDTDEENTV 173

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSS------VKVSL 223
              ATDGHRLA   V +       P   +++P + +      L   ++S      V +S 
Sbjct: 174 EFAATDGHRLARTRV-LYEPSENTPGNKLVMPTETLTLTTYALKQMETSEEIAEMVTISF 232

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            ES+I ++     +  R +DG++P+Y+ +I   N  +  ++CT  R+ +          +
Sbjct: 233 DESKIQVDFSEGFIRSRKLDGKYPDYEMLI---NGDDFSLDCTFKRKQL----------L 279

Query: 284 QAVK----LSLSSDKLCMTVDNPD------------MGKAIESMNVY-YNECPMDICFNY 326
           +A+K     ++  D LC     P+             G A +++ V   N     + FN 
Sbjct: 280 EALKFIDTFAVGKDSLCFIDFVPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNS 339

Query: 327 KYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            YL + +  +  D  V  E+          VF+         +   +   F ++MP++I
Sbjct: 340 NYLKQCLKAMPGD-TVTMEITETTGDQPGPVFV---------SPSEEYKTFGLVMPIQI 388


>gi|19703871|ref|NP_603433.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296329377|ref|ZP_06871877.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19714031|gb|AAL94732.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153497|gb|EFG94315.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 381

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 104/420 (24%), Positives = 182/420 (43%), Gaps = 76/420 (18%)

Query: 1   MKITVERSDILELLGHACRIIER---KNTIP--VSCHVLLQANDGLLEIKASGPEIEITG 55
           M I V R + L     A RI+E+   +N I   +SC          +  K  G +I  TG
Sbjct: 1   MHIKVNRQNFLS----AIRIVEKSVKENKIKPILSC----------IYAKVKGNKIYFTG 46

Query: 56  A-----IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105
                 I  S+DV      G +     ++ + +++++D   +      E G  + I   D
Sbjct: 47  TNLDTTIKTSIDVNEVIREGEVAFYYSIIDEYLKEIKDEFVVL---RVENGNILFIETED 103

Query: 106 SNFYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRY 155
           S      F   ++P+T E     E  + FE+ S  L N+ E+  F+  T +      IR 
Sbjct: 104 STTEYDVFSAEDYPNTFENIVLNENNFKFEMPSQELVNIFEKVLFSADTPDNIAMNCIR- 162

Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215
            +  I  H       L  V+T+ +RL   + +I   I+   S+ VP   +  I++I+   
Sbjct: 163 -IESILKH-------LHFVSTNTYRLTFLKKNIDKDISDF-SVSVPADTISSIIKIIKGL 213

Query: 216 DSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVD 273
           D+ V K+   ++ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + 
Sbjct: 214 DNEVIKIYKEDAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLHMNNDKLTNLLK 273

Query: 274 RVSIMSSVRIQAVKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
           R+ I S    ++   S         + +K+ ++  N ++ +  E ++V +    + I  N
Sbjct: 274 RILIFSRSNSESKYSSTYEFKHNEENKNKMAISALN-EIARINEELDVNFEGEDLKISLN 332

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            KYLLE I NI  ++    E+V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 333 SKYLLEFIQNIPKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|257452078|ref|ZP_05617377.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R]
 gi|257466123|ref|ZP_05630434.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917280|ref|ZP_07913520.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058627|ref|ZP_07923112.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R]
 gi|313684303|gb|EFS21138.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R]
 gi|313691155|gb|EFS27990.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 373

 Score = 65.1 bits (157), Expect = 2e-08,   Method: Compositional matrix adjust.
 Identities = 59/226 (26%), Positives = 102/226 (45%), Gaps = 20/226 (8%)

Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           I   D ++  V TD +RL     + +  + +   + +P +AV    +I    ++ VK+  
Sbjct: 162 IEGRDGEIHFVTTDTYRLTYLHKEFL--LPEDFQMSLPLEAVEACSKIFRGLEADVKLYF 219

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVR 282
            +   H  IE + +   LI+  FP YQ ++   N DK + ++  NL   + RV I     
Sbjct: 220 DKKFAHFEIEDIHIMSSLIELNFPAYQAILSNGNYDKTMGISTENLLSILRRVIIFVRNN 279

Query: 283 IQAVKLSLS---SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
            ++ K   +   SD L     N D+ K  E M V Y   P+ +  N KYL + + N+  D
Sbjct: 280 EES-KYGATFHLSDGLLKIKGNSDIAKINEEMIVDYQGAPLKVSLNTKYLFDFVQNLEKD 338

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  E++    SS +SV +  K K+         +  Y+LMP+ +
Sbjct: 339 TELSVEML----SSKTSVKVHEKGKE---------DYIYILMPLAL 371


>gi|257463320|ref|ZP_05627717.1| DNA polymerase III, beta chain [Fusobacterium sp. D12]
 gi|317060897|ref|ZP_07925382.1| DNA polymerase subunit III [Fusobacterium sp. D12]
 gi|313686573|gb|EFS23408.1| DNA polymerase subunit III [Fusobacterium sp. D12]
          Length = 365

 Score = 64.7 bits (156), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 79/389 (20%), Positives = 158/389 (40%), Gaps = 31/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R + + +L     I+   +  P+   + ++     L    S  E++    I   
Sbjct: 1   MKLKMKREEFISILSDYTSILRENSIKPILSTLFMEVKGNDLVFMGSSVEMDYKKQILCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+     L+ + V+ L++     +    +L   + I++G+ + +     E  +P 
Sbjct: 61  GMEDGSVVFKPALVLEYVKLLEE----EWITVEKLDGFLKIANGEFSIW----EEENYPK 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +   EL+ +     +E   F+ A       L+ I     +E  K+  V+TD +R
Sbjct: 113 IVELASMSLLELSGNEFAKCLETVKFSAAQTPENLALHCIRIVFGKE--KVYFVSTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   E  + AQ  +  +I +P  AV  I+++L  K   + + LS   +    E    S R
Sbjct: 171 LLYLEKKMTAQFER--AISLPLDAVNVIIKLLKDKTEQISLELSGDNLLFLWEGTYFSCR 228

Query: 241 LIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296
           L    +PN+Q ++   + DK++     +L+ A+ RV  ++   I A            L 
Sbjct: 229 LTAVPYPNFQGILSQNAFDKKMEFCLDDLKAAMKRVITVAKTSIDAKYGGTFDFKGKHLV 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +        K  + + +           N KYL E +D++S + ++        +  NSS
Sbjct: 289 VKAVTTGRAKTQQKIAMMKEGEDFVASLNCKYLSEFLDSVSRNVII--------EGKNSS 340

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              R  ++ ++          Y+LMP+ +
Sbjct: 341 SMFRVTEEGNE-------ELIYILMPLAL 362


>gi|257467227|ref|ZP_05631538.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918356|ref|ZP_07914596.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692231|gb|EFS29066.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 365

 Score = 64.3 bits (155), Expect = 3e-08,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 49/398 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R + + +L     I++  +  P+   + ++  +  L    S  E++    I   
Sbjct: 1   MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++     L+ + ++ L++     +    +L   + I++G            EF  
Sbjct: 61  GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG------------EFAI 104

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY---------YLNGIFFHINEEDLKL 171
            +EE Y    ELAS  L   ++   FA   E +++          LN I     +E  K+
Sbjct: 105 LEEENYPKIVELASMSLLQ-IQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KI 161

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+TD +RL   E  I AQ  +  +I +P +AV  I+++L  K   + + LS   + L 
Sbjct: 162 NFVSTDSYRLLYLEKKIGAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLL 219

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---K 287
            E    S RL    +PN+Q ++  +  DK++     +L+ A+ RV  ++   I A     
Sbjct: 220 WEGTYFSCRLTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGT 279

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
                 +L +        K  + + +           N KYL E +D IS + ++     
Sbjct: 280 FDFKGKQLVVKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVII----- 334

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 NSS   R  ++ ++          Y+LMP+ +
Sbjct: 335 ---YGKNSSSMFRVMEEGNE-------ELIYILMPLAL 362


>gi|257792998|ref|YP_003186397.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479690|gb|ACV60008.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 391

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 76/359 (21%), Positives = 152/359 (42%), Gaps = 25/359 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEI----- 53
           MK T    D+ ++L    R++       V  HVL++A   +  ++  AS  ++ +     
Sbjct: 1   MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLC 60

Query: 54  TGAIPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
             A  +SV++   GS  + A  LY+++++      +    +  +     I+ G + F L 
Sbjct: 61  VEATDSSVEIARSGSCLLPAKELYEVIKRANGPITVETTTDRTV-----ITFGKTKFELV 115

Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                 F P    ++ V +  + +  L  L+ RT +A    + R  L G+   +   D  
Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSQTRPILTGV--QLTLADGH 173

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----SES 226
           L AVATD  RLA   V       +   +++P   +  +   L + D   +V+     S  
Sbjct: 174 LSAVATDALRLAQYTVSCEDVNGEDRQLVIPAVLLDTLATALPASDDDEEVTFTLGTSSC 233

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
            +    ++  M++R ++G +P+   +IP      + V    L  A +RV+I+S    Q  
Sbjct: 234 TVSWGDDAFHMALRGLEGTYPDTARLIPERTAHRVVVERQALLTACERVAILSEADHQRA 293

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYL---LEIIDNISSDEV 341
           +   +   L ++  +   G A E++  +   +  +++  N  Y    L+ +D I+  E+
Sbjct: 294 EFRFTMSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDGIAQVEI 352


>gi|257451968|ref|ZP_05617267.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R]
 gi|317058517|ref|ZP_07923002.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R]
 gi|313684193|gb|EFS21028.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R]
          Length = 365

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 86/398 (21%), Positives = 162/398 (40%), Gaps = 49/398 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R + + +L     I++  +  P+   + ++  +  L    S  E++    I   
Sbjct: 1   MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++     L+ + ++ L++     +    +L   + I++G            EF  
Sbjct: 61  GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG------------EFAI 104

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY---------YLNGIFFHINEEDLKL 171
            +EE Y    ELAS  L   ++   FA   E +++          LN I     +E  K+
Sbjct: 105 LEEENYPKIVELASMSLLQ-IQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KI 161

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+TD +RL   E  I AQ  +  +I +P +AV  I+++L  K   + + LS   + L 
Sbjct: 162 NFVSTDSYRLLYLEKKIRAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLL 219

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---K 287
            E    S RL    +PN+Q ++  +  DK++     +L+ A+ RV  ++   I A     
Sbjct: 220 WEGTYFSCRLTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGT 279

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
                 +L +        K  + + +           N KYL E +D IS + ++     
Sbjct: 280 FDFKGKQLIVKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVII----- 334

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 NSS   R  ++ ++          Y+LMP+ +
Sbjct: 335 ---YGKNSSSMFRVMEEGNE-------ELIYILMPLAL 362


>gi|315928459|gb|EFV07771.1| DNA polymerase III beta subunit, central domain protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 247

 Score = 63.9 bits (154), Expect = 4e-08,   Method: Compositional matrix adjust.
 Identities = 53/233 (22%), Positives = 114/233 (48%), Gaps = 16/233 (6%)

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F   +FP+    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+ 
Sbjct: 2   FNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KIN 59

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            V TD  RLA+  ++      +  S  +P+KA+ E+ ++   K   +++   ++ +    
Sbjct: 60  FVGTDTKRLAIYTLEKANN--QEFSFSIPKKAIMEMQKLFYEK---IEIFYDQNMLIAKN 114

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           E+     +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++    + +KL  + 
Sbjct: 115 ENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVT----EKMKLHFNK 170

Query: 293 DKLC---MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           DK+    +++DN +    +E       E   ++    KYLL+ + +I  ++  
Sbjct: 171 DKIIFEGISLDNMEAKTELEIQTGVSEE--FNLTIKIKYLLDFLTSIEEEKFT 221


>gi|331703022|ref|YP_004399709.1| DNA polymerase IIIsubunit beta [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|256384459|gb|ACU79029.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385292|gb|ACU79861.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455793|gb|ADH22028.1| DNA polymerase III, beta subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328801577|emb|CBW53730.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 375

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 75/358 (20%), Positives = 155/358 (43%), Gaps = 32/358 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIP---------VSCHVLLQANDGLLEIKA----S 47
           M  ++ R  +L+ L  A ++I+ KN  P         +S  V + A  G+L  K+     
Sbjct: 1   MNFSINRMVLLDNLSKAAKVIDPKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60

Query: 48  GPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDS 106
             ++E+           G + +    + +++R+L D   + S  ++NEL     I   +S
Sbjct: 61  NSDLEVKQE--------GKVLLKPKFVLEMLRRLDDEFVVFSMVEDNELI----IKTDNS 108

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           +F +      ++P     E    F L    +K  + +   +M     +  L G+   +N 
Sbjct: 109 DFSIGVLNSEDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNN 168

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
              K     TD  R++   ++I +   +   I +P K   E+ ++L + ++ +K+ + E 
Sbjct: 169 N--KAIFSTTDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEG 225

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA- 285
            I   I+++     LIDG FPN Q   P   +  + V   ++ + + R  +++   + A 
Sbjct: 226 YITFIIDNVIFQSNLIDGRFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAI 285

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341
           V + ++ DK+       ++GK  E  + +  E    + I FN ++L++ I  +  D +
Sbjct: 286 VNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLDEDRI 343


>gi|83319869|ref|YP_424002.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|1169394|sp|P24117|DPO3B_MYCCT RecName: Full=DNA polymerase III subunit beta
 gi|83283755|gb|ABC01687.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 375

 Score = 63.5 bits (153), Expect = 5e-08,   Method: Compositional matrix adjust.
 Identities = 76/350 (21%), Positives = 154/350 (44%), Gaps = 16/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASG----PEIEITG 55
           M  ++ R  +L+ L  A ++I+ KN  P    + L   ND +  I  SG      I    
Sbjct: 1   MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFP 114
                V   G + +    + +++R+L D   + S  ++NEL  + N    +S+F +    
Sbjct: 61  NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVEDNELIIKTN----NSDFSIGVLN 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P     E    F L    +K  + +   +M     +  L G+   +N    +    
Sbjct: 117 SEDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKLNNN--QAIFS 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  R++   ++I +   +   I +P K   E+ ++L + ++ +K+ + E  I   I++
Sbjct: 175 TTDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDN 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293
           +     LIDG+FPN Q   P   +  + V   ++ + + R  +++   + A V + ++ D
Sbjct: 234 VIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNED 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341
           K+       ++GK  E  + +  E    + I FN ++L++ I  +S D +
Sbjct: 294 KIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLSEDRI 343


>gi|213423088|ref|ZP_03356106.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 131

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 41/133 (30%), Positives = 67/133 (50%), Gaps = 4/133 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFEL 132
           +  + +    F L
Sbjct: 118 NLDDWQSEVEFTL 130


>gi|296327521|ref|ZP_06870067.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155347|gb|EFG96118.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 364

 Score = 63.5 bits (153), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 85/393 (21%), Positives = 174/393 (44%), Gaps = 39/393 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117
           ++  G + +   LL + + KL +G  I+F K++   +      S  D N Y    PE   
Sbjct: 61  IESEGQVLIKPALLLEYI-KLLEGENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             P     E    F ++   +K L   T+ + +T+ +   +  IF     +D  L  V+T
Sbjct: 116 IIPIVIASENTVKFTMSLEKVKFL---TNSSTSTDTLFNSIKMIF-----KDNVLELVST 167

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  RL   + ++   I K   ++VP  ++  + +I    D    ++ S+ ++ +  +   
Sbjct: 168 DSFRLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAY 225

Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLSS 292
            + +L+   FP+++ +I  +N DK    N   L  A+ +   V+  SS        +   
Sbjct: 226 FTCKLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKG 285

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++L ++  + +  K  + +N+      + +  N KY+ + IDN      VD  ++  +D+
Sbjct: 286 NQLLISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDN------VDKNII--IDA 336

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 337 TNSSSMLRFMEEGNE-------NYIYLIMPVNI 362


>gi|19703952|ref|NP_603514.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714128|gb|AAL94813.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 364

 Score = 63.2 bits (152), Expect = 6e-08,   Method: Compositional matrix adjust.
 Identities = 83/393 (21%), Positives = 173/393 (44%), Gaps = 39/393 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117
           ++  G + +   LL + + KL +G  I+F K++   +      S  D N Y    PE   
Sbjct: 61  IESEGQVLIKPALLLEYI-KLLEGENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
             P     E    F ++   +K L   T+ + +T+ +   +  IF     +D  L  V+T
Sbjct: 116 IIPIVIASENTVKFTMSLEKVKFL---TNSSASTDTLFNSIKMIF-----KDNVLELVST 167

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  RL   + ++   I K   ++VP  ++  + +I    D    ++ S+ ++ +  +   
Sbjct: 168 DSFRLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAY 225

Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLSS 292
            + +L+   FP+++ +I  +N DK    N   L  A+ +   V+  SS        +   
Sbjct: 226 FTCKLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKG 285

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++L ++  + +  K  + +N+      + +  N KY+ + IDN+  + ++        D+
Sbjct: 286 NQLLISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDNVDKNIII--------DA 336

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 337 TNSSSMLRFMEEGNE-------NYIYLIMPVNI 362


>gi|256026784|ref|ZP_05440618.1| DNA polymerase III, beta chain [Fusobacterium sp. D11]
 gi|289764779|ref|ZP_06524157.1| DNA polymerase subunit III [Fusobacterium sp. D11]
 gi|289716334|gb|EFD80346.1| DNA polymerase subunit III [Fusobacterium sp. D11]
          Length = 381

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 98/415 (23%), Positives = 177/415 (42%), Gaps = 70/415 (16%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R + L  +    + ++     P+   +  +  +   +I  +G  ++ T  I  S
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107
           +DV      G I  S  ++ + +++++D           I F +  +  TE ++   +  
Sbjct: 57  IDVDEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENRNILFIETEDSTTEYDVHSAE-- 114

Query: 108 FYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRYYL 157
                    ++P+T E     E  + FE+ S  L N+ E+  F+  T +      IR  +
Sbjct: 115 ---------DYPNTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNIAMNCIR--I 163

Query: 158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS 217
             I  H       L  V+T+ +RL   + +I   I    S+ VP   +  I++I+   D+
Sbjct: 164 ESILKH-------LHFVSTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDN 215

Query: 218 SV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRV 275
            V KV   E+ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + R+
Sbjct: 216 EVIKVYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRI 275

Query: 276 SIMSSVRIQAVKLSL------SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKY 328
            I S    ++   S         +K  MT+    ++ +  E ++V +    + I  N KY
Sbjct: 276 LIFSRSNSESKYSSTYEFKHNEENKGIMTISALNEIARINEELDVNFEGEDLKISLNSKY 335

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           LLE I NI  ++    E+V     SNS+V +  KD D            Y+LMP+
Sbjct: 336 LLEFIQNIPKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPL 377


>gi|218289463|ref|ZP_03493691.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240331|gb|EED07513.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 391

 Score = 63.2 bits (152), Expect = 7e-08,   Method: Compositional matrix adjust.
 Identities = 78/359 (21%), Positives = 150/359 (41%), Gaps = 25/359 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEI----- 53
           MK T    D+ ++L    R++       V  HVL++A   +  ++  AS  ++ +     
Sbjct: 1   MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLF 60

Query: 54  TGAIPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
             A  +SV++   GS  + A  LY+++++      +    +  +     I  G + F L 
Sbjct: 61  VEATDSSVEIAQSGSCLLPAKELYEVIKRANGPITMETTTDRTV-----IKFGKTKFELV 115

Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                 F P    ++ V +  + +  L  L+ RT +A      R  L G+   +   D  
Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSLTRPILTGV--QLTLADGH 173

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL----SES 226
           L AVATD  RLA   V       +   +++P   +  +   L + D   +VS     S  
Sbjct: 174 LSAVATDALRLAQHTVSCEDVNGEDRQLVIPAVLLDTLAAALPATDDDEEVSFTLGTSSC 233

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
            +    ++  M++R ++G +PN   +IP      + V    L  A +RV+I+S    Q  
Sbjct: 234 TVSWGDDAFHMALRGLEGTYPNTARLIPERMTHRVVVERQALLTACERVAILSEADHQRA 293

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYL---LEIIDNISSDEV 341
           +   +   L ++  +   G A E++  +   +  +++  N  Y    L+ +D I+  E+
Sbjct: 294 EFRFTPSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDGIAQVEI 352


>gi|238810154|dbj|BAH69944.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 369

 Score = 63.2 bits (152), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 174/376 (46%), Gaps = 39/376 (10%)

Query: 13  LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH 72
           L G  C +I+  N       V   A++G++ I  S  ++E    +   V+  G+  + A+
Sbjct: 28  LYGFRCILIKVDNE-----KVTFSASNGVISIVKS-LDVE---DVDIKVEETGTFLIQAN 78

Query: 73  LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132
           +   I++KL +   +S     E  T + IS G+SN+ L + P + FP  +E   +   E+
Sbjct: 79  IFKAIIKKLSETITLS----QEYSTTLEISQGNSNYSLTTNPINSFPQIEENINLKKIEI 134

Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192
            ++  K  +  T FA++ +    Y   I F      L L   ATD  RLA   +D+ +  
Sbjct: 135 DTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNNKLNLT--ATDAARLAYYTMDLKSSQ 191

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQ 250
                  V  K V +++      D+S KV+L  +RI + IE  +  ++ R++D  +P+ +
Sbjct: 192 VDNEEFSVNNKDVKDLI----PADASKKVTLFFNRIKIGIEYKNTVITSRIVDLPYPDVE 247

Query: 251 NVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI- 308
           ++    + + ++ +    +   +++V + +S +   ++ +++ +++ +     ++G +I 
Sbjct: 248 SLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNEITVLNRLNEIGTSIA 307

Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368
           ++ N  +     +   NY +L + +       V + +V+   D S   + +      S +
Sbjct: 308 KTENFKFEGKAFEFDINYHFLKDAL------SVFEGDVLILFDKSVQKILVV-----SDS 356

Query: 369 NKDNKVNAFYVLMPMR 384
           NK++K     ++ PMR
Sbjct: 357 NKESK----QLVTPMR 368


>gi|319776740|ref|YP_004136391.1| DNA polymerase iii beta subunit [Mycoplasma fermentans M64]
 gi|318037815|gb|ADV34014.1| DNA polymerase III beta subunit [Mycoplasma fermentans M64]
          Length = 368

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 174/376 (46%), Gaps = 39/376 (10%)

Query: 13  LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH 72
           L G  C +I+  N       V   A++G++ I  S  ++E    +   V+  G+  + A+
Sbjct: 27  LYGFRCILIKVDNE-----KVTFSASNGVISIVKS-LDVE---DVDIKVEETGTFLIQAN 77

Query: 73  LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132
           +   I++KL +   +S     E  T + IS G+SN+ L + P + FP  +E   +   E+
Sbjct: 78  IFKAIIKKLSETITLS----QEYSTTLEISQGNSNYSLTTNPINSFPQIEENINLKKIEI 133

Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192
            ++  K  +  T FA++ +    Y   I F      L L   ATD  RLA   +D+ +  
Sbjct: 134 DTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNNKLNLT--ATDAARLAYYTMDLKSSQ 190

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQ 250
                  V  K V +++      D+S KV+L  +RI + IE  +  ++ R++D  +P+ +
Sbjct: 191 VDNEEFSVNNKDVKDLI----PADASKKVTLFFNRIKIGIEYKNTVITSRIVDLPYPDVE 246

Query: 251 NVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI- 308
           ++    + + ++ +    +   +++V + +S +   ++ +++ +++ +     ++G +I 
Sbjct: 247 SLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNEITVLNRLNEIGTSIA 306

Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368
           ++ N  +     +   NY +L + +       V + +V+   D S   + +      S +
Sbjct: 307 KTENFKFEGKAFEFDINYHFLKDAL------SVFEGDVLILFDKSVQKILVV-----SDS 355

Query: 369 NKDNKVNAFYVLMPMR 384
           NK++K     ++ PMR
Sbjct: 356 NKESK----QLVTPMR 367


>gi|253582114|ref|ZP_04859338.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725]
 gi|251836463|gb|EES65000.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725]
          Length = 376

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 84/407 (20%), Positives = 173/407 (42%), Gaps = 59/407 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + ++R D L+ L    + I      P+     ++  +  L    +  E  IT  +   
Sbjct: 1   MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETREENLFFCGTNLETTITTEMKCE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL--------- 110
             V  G I     L+ + +R+++D               V +S  D+N ++         
Sbjct: 61  EIVEEGKIVFQHQLVDEYLREIKDEI-------------VTLSVRDNNLFIESSDSSSEF 107

Query: 111 -----QSFP----ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF 161
                + FP    E++F   +E+     F++ S+ L ++ E+  FA ++      +N + 
Sbjct: 108 SLMEAEDFPRILVEADFFQRQED-----FKINSTELADIFEKVKFAASSSSENLPINCVR 162

Query: 162 FHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVK 220
                 +LK   + TD +RL   E ++  ++ +   + +P   +  + ++L S +++ +K
Sbjct: 163 LESEGNNLKF--ITTDTYRLVFLEKEL-EKVNEKLGVSIPLNTIEALAKLLRSIEETEIK 219

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS 279
                 +++  +E   +  R+ID  FPNY+ ++   + +K L +N     + + R+ I  
Sbjct: 220 FYFYNKQVYFKLEDTLIISRVIDLAFPNYRGILGNDTYNKTLIINSEKFLKVLRRIIIFV 279

Query: 280 SVRIQA---VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
              +++       L   +L +   N D+ K  E + V Y    + I  N K+L + I N+
Sbjct: 280 RNNVESKYGATFELEGKELKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSDFIQNL 338

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +     +  ++    SSNSSV I+         K+N  N  Y++MP+
Sbjct: 339 NK----ESNIMLNFISSNSSVKIK---------KENDDNYLYIVMPL 372


>gi|308189589|ref|YP_003922520.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624331|gb|ADN68636.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 368

 Score = 62.8 bits (151), Expect = 8e-08,   Method: Compositional matrix adjust.
 Identities = 81/376 (21%), Positives = 174/376 (46%), Gaps = 39/376 (10%)

Query: 13  LLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH 72
           L G  C +I+  N       V   A++G++ I  S  ++E    +   V+  G+  + A+
Sbjct: 27  LYGFRCILIKVDNE-----KVTFSASNGVISIVKS-LDVE---DVDIKVEETGTFLIQAN 77

Query: 73  LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132
           +   I++KL +   +S     E  T + IS G+SN+ L + P + FP  +E   +   E+
Sbjct: 78  IFKAIIKKLSETITLS----QEYSTTLEISQGNSNYSLTTNPINSFPQIEENINLKRIEI 133

Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192
            ++  K  +  T FA++ +    Y   I F      L L   ATD  RLA   +D+ +  
Sbjct: 134 DTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNNKLNLT--ATDAARLAYYTMDLKSSQ 190

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQ 250
                  V  K V +++      D+S KV+L  +RI + IE  +  ++ R++D  +P+ +
Sbjct: 191 VDNEEFSVNNKDVKDLI----PTDASKKVTLFFNRIKIGIEYKNTVITSRIVDLPYPDVE 246

Query: 251 NVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI- 308
           ++    + + ++ +    +   +++V + +S +   ++ +++ +++ +     ++G +I 
Sbjct: 247 SLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNEMTVLNRLNEIGTSIA 306

Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368
           ++ N  +     +   NY +L + +       V + +V+   D S   + +      S +
Sbjct: 307 KTENFKFEGKAFEFDINYHFLKDAL------SVFEGDVLILFDKSVQKILVV-----SDS 355

Query: 369 NKDNKVNAFYVLMPMR 384
           NK++K     ++ PMR
Sbjct: 356 NKESK----QLVTPMR 367


>gi|6007546|gb|AAF00953.1|AF183408_1 DNA polymerase III beta subunit [Microcystis aeruginosa PCC 7806]
          Length = 139

 Score = 62.8 bits (151), Expect = 9e-08,   Method: Compositional matrix adjust.
 Identities = 34/104 (32%), Positives = 61/104 (58%), Gaps = 2/104 (1%)

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCM 297
           R ++G +P Y  +IP S D+ L ++   L + ++ V+++S  +   VK SL S  D+L +
Sbjct: 4   RKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSL 63

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
            V++PD+G A ESM         DI FN KYL++ +  + ++++
Sbjct: 64  AVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNNDI 107


>gi|228918927|ref|ZP_04082312.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228840729|gb|EEM85986.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 370

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 82/391 (20%), Positives = 164/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPE-IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    V L  N  G++ + + G E + +     
Sbjct: 1   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVFLDCNQQGMILMGSDGTETVTLVTRFN 60

Query: 59  ASVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   C   G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESMKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       +       +  RT  A+A  + R  L G+  ++     +L   A
Sbjct: 118 EEYPEIKIESGKDWLTMTQEQFAEIASRTLHAIAIADTRKVLTGL--NLKSMKGELSCTA 175

Query: 176 TDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD +RLA    +      AK   +I+P K++   L++ + +       +S++++ +  ES
Sbjct: 176 TDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFNREPKLEMKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   +IP  +D  + V  + L+  ++++S  S++    +  S     
Sbjct: 236 IIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFSTL---VMFTSEGQKS 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   N  +G A   +     E     C N +YLL+ +  I S     + +  ++ S+ 
Sbjct: 293 LRIEPKNSQVGTASVEIPCDQEETFTFAC-NVEYLLQALQTIQS-----EAITIKIISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + I G +  + +N         +++P+R+
Sbjct: 347 RPIVIVGANDKTNSN-------LQLILPVRV 370


>gi|228912517|ref|ZP_04076182.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
 gi|228847087|gb|EEM92076.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
          Length = 370

 Score = 62.0 bits (149), Expect = 1e-07,   Method: Compositional matrix adjust.
 Identities = 86/394 (21%), Positives = 173/394 (43%), Gaps = 33/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M   + R+  +E L  A   ++ K+ +P    VLL+ N  G++ + + G E  +T     
Sbjct: 1   MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTET-VTLVTRF 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSF 113
           +V+  G  T    +L+     L+    I  FK   +G E        + +    F   + 
Sbjct: 60  NVN-SGDCTEPGKVLFAAAPVLKT---IKKFKSEFIGLEHTNNELKIVENTKKQFSFCTM 115

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P  K E       +       +  RT  A+A  + R  L G+  ++   + +L  
Sbjct: 116 DHEEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGL--NLKSMEGELSC 173

Query: 174 VATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLN 231
            ATD +RLA    +     A K   +I+P K++   L++ + ++S +++ L S++++ + 
Sbjct: 174 TATDSYRLARLRFERTHIPATKDGEVILPSKSLKTALKLFN-RESKLEMKLISDTQLLIR 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ES+    RL+ G +P+   +IP  +D  + V  + L+  ++++S  SS+    +  S  
Sbjct: 233 GESIIYQSRLLAGVYPDTSRMIPVYSDIYVTVERSELQNTLEQLSAFSSL---VMFTSEG 289

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   N  +G A   +     E     C N +YLL+ +  I S     + +  ++ 
Sbjct: 290 KKSLRIEPKNSQVGTASVEIPCDQEETFTFAC-NVEYLLQALQTIPS-----EAITIKII 343

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   + I G D  + +N+        +++P+R+
Sbjct: 344 NNQRPIVIVGADDKTNSNQQ-------LILPVRV 370


>gi|239904641|ref|YP_002951379.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1]
 gi|239794504|dbj|BAH73493.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1]
          Length = 397

 Score = 62.0 bits (149), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 80/413 (19%), Positives = 170/413 (41%), Gaps = 56/413 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TV R+DI++ L  +  II  K        V L+A    L I ++   +E TG   A 
Sbjct: 1   MQLTVFRNDIIDGLQKSSSIIPAKTGAAFLRTVWLEAAGSSLSILSTDSSLEFTGHYAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--------YLQS 112
           V   G   V     +++VRKL  G +IS    +E    + I  G   +        + Q 
Sbjct: 61  VAKEGLCGVQGKSFFELVRKLPPG-EIS-LTLDEASGNLLIKQGSRRYKLPVSDRNWFQP 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  + FP+     +   F      L+ ++ER  + ++ E+    +  ++     +  ++ 
Sbjct: 119 F--AAFPNEGAVTWSGDF------LQEIIERVAYCISDEDTMEAMACMYLRPVADSARIE 170

Query: 173 AVATDGHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
               +GH+ ++     D +  +     I++ +K V E+ R L++++  V++++ + R+  
Sbjct: 171 VCGLNGHQFSLVGFLNDDIHAMLPPDGILIQKKYVAELKRWLTAEE--VELAMGQKRLFF 228

Query: 231 --------------NIESLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVD 273
                         ++E+ S+ +     ++P+Y   +          L ++      A++
Sbjct: 229 RTTKRDEAAPEGQGSVETFSLPLSFY--QYPDYNAFVSKLATDGVSTLAIDRLECIDALE 286

Query: 274 RVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           RV+I ++   +          +L +     + G+A E++   +      + F  K L +I
Sbjct: 287 RVAIFNTDNNRCASFLFDGPGELSLKSQGQEAGEATETLECVFTGDLDKVAFPTKDLTDI 346

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  S      +V   L  +     IRG+D           ++  ++MPM+I
Sbjct: 347 LGHFES-----AKVSLTLTGAEGPCGIRGED---------DTDSLVIIMPMKI 385


>gi|297201230|ref|ZP_06918627.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
 gi|297147836|gb|EDY56941.2| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
          Length = 388

 Score = 61.6 bits (148), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 38/150 (25%), Positives = 71/150 (47%), Gaps = 3/150 (2%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             +A+  L   ++   FA +T+     L G+ F I  E L +  VATD +RLAVA   + 
Sbjct: 158 LTVAAPELGAALDTVRFAASTDPELPMLGGVLFDIEGESLHV--VATDRYRLAVARAGVT 215

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
                   +IVP   + + +R L   +  V+  L   R+ L      ++ + +D +FP+Y
Sbjct: 216 GHEGSRVQVIVP-TPLADAMRALLHGEGPVRFLLDGDRVALEAGDGQVAGQCLDHDFPDY 274

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           + ++P + D+   V   + R+ ++   + S
Sbjct: 275 RRLLPQAGDRRALVEVADFRRTLETGPVRS 304


>gi|169834653|ref|YP_001693398.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str.
           Okra]
 gi|169123201|gb|ACA47036.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str.
           Okra]
          Length = 381

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 24/291 (8%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    E       + 
Sbjct: 65  GNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAREHTISDILKS 123

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           + +YS  L + V K+L++ T +A+A +E R  L G +  + +  +K+ A+  DG RL   
Sbjct: 124 DIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKITAL--DGFRLVSN 181

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE-------SL 235
              I  Q   M  I          LR LSS   DS+ +V L+++     +E       ++
Sbjct: 182 SAKIENQHEDMILIHANN------LRNLSSLIDDSTEEVILNKNNNKTIVEVKNKNYVAI 235

Query: 236 SMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           + S  +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS   +   + +  +
Sbjct: 236 AAS-NIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294

Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341
           K  + +D N  +      +N+  N  E    I FN KY+L+ + NI++ E+
Sbjct: 295 KDSLEIDGNSSVASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEI 345


>gi|289811520|ref|ZP_06542149.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 119

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 63/121 (52%), Gaps = 4/121 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 S 120
           +
Sbjct: 118 N 118


>gi|237738323|ref|ZP_04568804.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817]
 gi|229420203|gb|EEO35250.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817]
          Length = 363

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 87/391 (22%), Positives = 166/391 (42%), Gaps = 40/391 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  ++ +L     I++     P+   + + A D  +    +  EIE    I A 
Sbjct: 1   MKFSIIREQLISVLSEYTNILKENPIKPIVSGLKIIAKDNQVIFIGTNLEIEHIRKIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL----GTEVNISHGDSNFYLQSFPES 116
           V+  G + +   LL + ++ L++  +I F  EN        E ++  G S          
Sbjct: 61  VEREGEVVLKPFLLLEYIKLLEED-KIEFSSENGFVAVHQAEFSVLEGGS---------- 109

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E E      +  + L  L++R  FA +       +N +     +E+L L +  T
Sbjct: 110 -YPVIPELESQSLLTIEGNRLVQLLDRAKFAASQSADNIQINCVRAVFKKEELNLAS--T 166

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RL      +     K  SI  P + V  + ++L   +  + +  S   + +  E+  
Sbjct: 167 DSYRLLFLREKVECNENKELSI--PMETVNILCKLLKDYNKEIHLGYSGETLVITWENSY 224

Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            S + I  ++P+++ ++  S  +K +  N   LR A+ RV  ++   + A   ++ +   
Sbjct: 225 FSSKTIGLQYPDFKTILRISAFEKRMEFNRDELRSAIKRVITVAKTSLDAKFGAIFNFTG 284

Query: 296 CMTVDNPDMGKAI--ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            M V N   G+A   + +N+           N K+L E IDNIS++ ++         ++
Sbjct: 285 KMMVINAFSGRAKINQKVNMLKEGEDFKASLNCKFLAEYIDNISNNVIIS-------GNN 337

Query: 354 NSSVF-IRGKDKDSKNNKDNKVNAFYVLMPM 383
            SS+F IR      + N+D      Y+LMP+
Sbjct: 338 ASSMFEIR-----EEGNED----YIYILMPL 359


>gi|168184796|ref|ZP_02619460.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
 gi|182672169|gb|EDT84130.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
          Length = 381

 Score = 61.2 bits (147), Expect = 2e-07,   Method: Compositional matrix adjust.
 Identities = 75/291 (25%), Positives = 137/291 (47%), Gaps = 24/291 (8%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    E       + 
Sbjct: 65  GNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAREHTISDILKS 123

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           + +YS  L + V K+L++ T +A+A +E R  L G +  + +  +K+ A+  DG RL   
Sbjct: 124 DIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKITAL--DGFRLVSN 181

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE-------SL 235
              I  Q   M  I          LR LSS   DS+ +V L+++     +E       ++
Sbjct: 182 SAKIENQHEDMILIHANN------LRNLSSLIDDSTEEVILNKNNNKAIVEVKNKNYVAI 235

Query: 236 SMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           + S  +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS   +   + +  +
Sbjct: 236 AAS-NIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294

Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341
           K  + +D N  +      +N+  N  E    I FN KY+L+ + NI++ E+
Sbjct: 295 KDSLEIDGNSSVASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEI 345


>gi|254304130|ref|ZP_04971488.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324322|gb|EDK89572.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 381

 Score = 61.2 bits (147), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 105/418 (25%), Positives = 181/418 (43%), Gaps = 76/418 (18%)

Query: 1   MKITVERSDILELLGHACRIIER---KNTIP--VSCHVLLQANDGLLEIKASGPEIEITG 55
           M I V R + L     A RI+E+   +N I   +SC          +  K  G +I  TG
Sbjct: 1   MHIRVNRQNFL----SAIRIVEKSIKENKIKPILSC----------IYAKVKGNKIYFTG 46

Query: 56  A-----IPASVDVC-----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105
                 I  S+DV      G +     ++ + +++++D   I    EN  G  + I   D
Sbjct: 47  TNLDTTIKTSIDVNEVIREGEVAFYCSIIDEYLKEIKDEF-IVLRVEN--GNILFIETED 103

Query: 106 SNFYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRY 155
           S      F   ++P+T E     E  + FE+ S  L  + E   F+  T +      IR 
Sbjct: 104 SITEYDVFSAEDYPNTFENIILNENNFKFEMPSQELVTIFENVLFSADTPDNIAMNCIR- 162

Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215
            +  I  H       L  V+T+ +RL   + +I   I    S+ VP   +  I++I+   
Sbjct: 163 -IESILKH-------LHFVSTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGL 213

Query: 216 DSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVD 273
           D+ V K+   ++ ++   +  ++  +LI+  FPNY  ++   S DK+L +N   L   + 
Sbjct: 214 DNEVIKIYKEDAHLYFQYKDTTIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLK 273

Query: 274 RVSIMSSVRIQAVKLSL--------SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
           R+ I S    ++   S         +++K+ ++  N ++ +  E ++V +    + I  N
Sbjct: 274 RILIFSRSNSESKYSSTYEFKHGEENNNKMSISALN-EIARINEELDVNFEGEDLKISLN 332

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            KYLLE I NI  ++    E+V     SNS+V +  KD D            Y+LMP+
Sbjct: 333 SKYLLEFIQNIPKEK----ELVLEFMYSNSAVKVYEKDNDE---------YIYILMPL 377


>gi|260892589|ref|YP_003238686.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
 gi|260864730|gb|ACX51836.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
          Length = 386

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 80/377 (21%), Positives = 157/377 (41%), Gaps = 22/377 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-----NDGLLEIKASGPEIEITG 55
           +++ V++ ++ ++L    R +  K  +P    VL++          + + A+  + +I  
Sbjct: 8   LRVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVA 67

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFP 114
           ++ A ++  G + + A   +D+VR+L +       +  + G E V +S+      L    
Sbjct: 68  SLQAHLEGEGELWLPAKETFDLVRRLPE----CTLELGQAGPEQVLVSYPGGEARLTGMN 123

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP+  E+E  Y+  L    L N + R  +A A +     + G+    +     L   
Sbjct: 124 PEEFPAVNEQEDGYT-ALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSG-GLTFA 181

Query: 175 ATDGHRLAV---AEVDIVAQIAKMPSIIVPRKAVGEIL---RILSSKDSSVKVSLSESRI 228
           ATDGHRLAV    E D         S +VP   + E+L   ++L  +   V +    +  
Sbjct: 182 ATDGHRLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLLGKEPDRVLLGRHTASF 241

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
               E+   + RLID +FP+++  +P  S    L      L   ++R   ++      V 
Sbjct: 242 VWPGEA-EFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVV 300

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L +   +        + G+  E ++       + + FN  YLLE +  +  D   +  V 
Sbjct: 301 LLVKEGEEVRLEARSEAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVL--DSAAEVRVG 358

Query: 348 FRLDSSNSSVFIRGKDK 364
               +S ++V + G ++
Sbjct: 359 LYGPASPATVTVPGDER 375


>gi|326943605|gb|AEA19498.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 370

 Score = 60.8 bits (146), Expect = 3e-07,   Method: Compositional matrix adjust.
 Identities = 85/394 (21%), Positives = 173/394 (43%), Gaps = 33/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M   + R+  +E L  A   ++ K+ +P    VLL+ N  G++ + + G E  +T     
Sbjct: 1   MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTET-VTLVTRF 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN------ISHGDSNFYLQSF 113
           +V+  G  T    +L+     L+    I  FK   +G E        + +    F   + 
Sbjct: 60  NVN-SGDCTEPGKVLFAAAPVLKT---IKKFKSEFIGLEHTNNELKIVENTKKQFSFCTM 115

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P  K E       +       +  RT  A+A  + R  L G+  ++   + +L  
Sbjct: 116 DHEEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGL--NLKSMEGELSC 173

Query: 174 VATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLN 231
            ATD +RLA    +      AK   +I+P K++   L++ + ++S +++ L S++++ + 
Sbjct: 174 TATDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFN-RESKLEMKLISDTQLLIR 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ES+    RL+ G +P+   +IP  +D  + V  + L+  ++++S  S++    +  S  
Sbjct: 233 GESIIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFSTL---VMFTSEG 289

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           +  L +   N  +G A   +     E     C N +YLL+ +  I S     + +  ++ 
Sbjct: 290 TKSLRIEPKNSQVGTASVEIPCDQEETFTFAC-NVEYLLQALQTIPS-----EAITIKII 343

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   + I G D  + +N         +++P+R+
Sbjct: 344 NNQRPIVIVGADDKTNSN-------LQLILPVRV 370


>gi|237742193|ref|ZP_04572674.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|256845466|ref|ZP_05550924.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
 gi|229429841|gb|EEO40053.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|256719025|gb|EEU32580.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
          Length = 364

 Score = 60.8 bits (146), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 83/398 (20%), Positives = 171/398 (42%), Gaps = 49/398 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++               L  E NI+    + YL     +EF  
Sbjct: 61  IESEGQVLIKPALLLEYIK---------------LVEEDNINFEKKDGYL-IVNNAEFSI 104

Query: 121 TKEEEYVYSFELASSVLKNLVERT-HFAMATEEIRYYLNG------IFFHINE--EDLKL 171
             +  Y    E+   V+    E T  F M+ E++++  N       +F  I    +D  L
Sbjct: 105 LDDNTYPELTEIIPIVIA--TENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNIL 162

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+TD  RL   + ++   I K   I+VP  ++  I +IL   D    ++ S+ ++ + 
Sbjct: 163 ELVSTDSFRLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVT 220

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVK 287
            +    + +L+   FP+++ +I  +N DK    N   L  A+ +   V+  SS       
Sbjct: 221 WKDAYFTCKLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVAT 280

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            +   ++L ++  + +  K  + +N+      + +  N KY+ E IDN+  + ++     
Sbjct: 281 FNFKGNQLVISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNLII----- 334

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +++NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 335 ---EATNSSSMLRFMEEGNE-------NYIYLIMPVNI 362


>gi|313664892|ref|YP_004046763.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50]
 gi|312949557|gb|ADR24153.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50]
          Length = 375

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 75/350 (21%), Positives = 152/350 (43%), Gaps = 16/350 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASG----PEIEITG 55
           M  ++ R  +L+ L  A ++I+ KN  P    + L   ND +  I  SG      I    
Sbjct: 1   MNFSINRMILLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQINVIATSGILSFKSILNNQ 60

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQI-SFFKENELGTEVNISHGDSNFYLQSFP 114
                V   G + +    + +++R+L D   + S  +ENEL     I   +S+F +    
Sbjct: 61  NSDLEVKQEGKVLLKPKYVLEMLRRLDDQFVVFSMVEENELI----IKTDNSDFSVGVLN 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P     E    F L    +K  + +   +M     +  L G+   +     +    
Sbjct: 117 SEDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTNN--QAIFS 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  R++   ++I +   +   I +P K   E+ ++L + ++ +K+ + E  I   I++
Sbjct: 175 TTDSFRISQKILEIQSNNNEDIDITIPFKTALELPKLLDNAEN-LKIIIVEGYITFIIDN 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSD 293
           +     LIDG+FPN Q   P   +  + V   ++ + + R  +++   + A V + ++ D
Sbjct: 234 VIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNED 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341
           K+       ++GK  E  + +  E    + I FN ++L++ I  ++ D +
Sbjct: 294 KIEFKSFISEVGKYEEDFDNFVIEGNKSLSISFNTRFLIDAIKTLNEDRI 343


>gi|257463051|ref|ZP_05627453.1| DNA polymerase III, beta chain [Fusobacterium sp. D12]
 gi|317060655|ref|ZP_07925140.1| DNA polymerase subunit III [Fusobacterium sp. D12]
 gi|313686331|gb|EFS23166.1| DNA polymerase subunit III [Fusobacterium sp. D12]
          Length = 373

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 71/305 (23%), Positives = 126/305 (41%), Gaps = 41/305 (13%)

Query: 96  GTEVNISHGDSNFYLQSFPESEFPST-----KEEEYVYSFELASSVLKNLVERTHFAMAT 150
           G  + +  GD+     +FP  ++P       K+EE V    + S  L  + ++  F+  +
Sbjct: 93  GEALMVEGGDAVSEFSTFPYEDYPKAFENFEKQEEEVL-LRMNSIELATIFDKLKFSAGS 151

Query: 151 EE------IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            +      +R         +   D ++  V TD +RL         Q     S+  P + 
Sbjct: 152 TDNPAIHCVR---------VEGRDGEIHFVTTDTYRLTYLHKSFSLQEDFQMSL--PLET 200

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN-DKELRV 263
           V    +I    ++ VKV   +   H  IE + +   LI+  FP YQ ++   N DK + +
Sbjct: 201 VEACSKIFRGLEAEVKVYFDKKFAHFLIEDIHIVSSLIELTFPAYQTILSNGNYDKIMGI 260

Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLS---SDKLCMTVDNPDMGKAIESMNVYYNECPM 320
           +  +L   + RV I      ++ K   +   +D +     N D+ K  E M V Y   P+
Sbjct: 261 STESLISILRRVIIFVRNNEES-KYGATFHLADGVLKIKGNSDIAKINEEMAVDYQGAPL 319

Query: 321 DICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVL 380
            +  N KYL + + N+      D E+   + SS +SV +  K K+         +  Y+L
Sbjct: 320 KVSLNTKYLFDFVQNLEK----DTELSLEMLSSKTSVKVHEKGKE---------DYIYIL 366

Query: 381 MPMRI 385
           MP+ +
Sbjct: 367 MPLAL 371


>gi|319654505|ref|ZP_08008589.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
 gi|317393815|gb|EFV74569.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 45/173 (26%), Positives = 84/173 (48%), Gaps = 11/173 (6%)

Query: 96  GTEVNISHGDSNFYLQSFPESEFPSTK----EEEYVYSFELASSVLKNLVERTHFAMATE 151
           G  + +  G S F L +F   EFP       EE  ++   L  + L NL+++T FA A  
Sbjct: 95  GFTLLLQSGRSKFNLNTFDPEEFPKLPDFAIEESTLF---LKGTDLSNLIKKTGFAAADS 151

Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211
           EIR  L G+   ++ + +++  V TD HRL   +V   +   +    ++P K++ ++ + 
Sbjct: 152 EIRPILTGVCLDLSGDCMQM--VCTDSHRLGKVQVRNTSD--RDLKFVIPAKSLDKLNKT 207

Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
              ++       SE+++     SL    RL++G +P+   +IP     E+++N
Sbjct: 208 FDLQEDVHIYCESENQLIFRSGSLVFYCRLLEGTYPDTSRLIPQDFKAEMKIN 260


>gi|290958477|ref|YP_003489659.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22]
 gi|260648003|emb|CBG71110.1| putative DNA polymerase III beta chain [Streptomyces scabiei 87.22]
          Length = 369

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             +A+  L   ++   FA++T+     L G+ F I   +L+   VATD +R+AVA   I 
Sbjct: 130 LSVAAPELAAALDTVRFAVSTDPGLPMLGGVLFDIEGGNLR--TVATDRYRMAVARAGIT 187

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
                    +VP   V + +R LS    + ++++   R+ L+      + + +D +FP+Y
Sbjct: 188 GHDEGRVQAVVPTPLV-DAMRALSVGGGTARLAVDGDRVTLDAGDGQAAGQCLDHDFPDY 246

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + ++P    +   V+    R+A++   + S 
Sbjct: 247 RRLLPADGGRRALVDVAAFREALETGPVRSG 277


>gi|257469128|ref|ZP_05633222.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185]
 gi|317063375|ref|ZP_07927860.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
 gi|313689051|gb|EFS25886.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
          Length = 376

 Score = 60.5 bits (145), Expect = 4e-07,   Method: Compositional matrix adjust.
 Identities = 88/412 (21%), Positives = 170/412 (41%), Gaps = 69/412 (16%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M + ++R D L+ L    + I      P+ SC  +    + L      G  +E T     
Sbjct: 1   MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETRGENLF---FCGTNLETTITTEM 57

Query: 60  SVDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL------ 110
             +     G I     L+ + +R+++D               V +S  D+N ++      
Sbjct: 58  KCEEIVEEGRIVFQHQLVDEYLREIKDEI-------------VTLSVRDNNLFIESSDSS 104

Query: 111 --------QSFP----ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
                   + FP    E++F   +E+     F++ S  L ++ E+  FA +T      +N
Sbjct: 105 SEFSLMEAEDFPKILVEADFFQRQED-----FKMNSVELADIFEKVKFAASTSSDNLSIN 159

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDS 217
            +       +LK   + TD +RL   E ++  ++ +   + +P   +  + ++L S +++
Sbjct: 160 CVRLESEVNNLKF--ITTDTYRLVFLEKEL-EKVNEKLEVSIPLNTIEALTKLLRSIEET 216

Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVS 276
            +K      +++  +E   +  R+ID  FPNY+ ++  +  +K L +N     + + R+ 
Sbjct: 217 EIKFYFYNKQVYFKLEDTLIISRVIDLAFPNYKGILGNNTYNKTLLINSEKFLKVLRRII 276

Query: 277 IMSSVRIQA-----VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           I   VR  A         L    L +   N D+ K  E + V Y    + I  N K+L +
Sbjct: 277 IF--VRNNAESKYGATFELEGKDLKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSD 333

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I N++     +  ++    SSN SV I+         K+N  N  Y++MP+
Sbjct: 334 FIQNLNK----ESNIMLNFISSNGSVKIK---------KENDDNYLYIVMPL 372


>gi|327398176|ref|YP_004339045.1| DNA polymerase III subunit beta [Hippea maritima DSM 10411]
 gi|327180805|gb|AEA32986.1| DNA polymerase III, beta subunit [Hippea maritima DSM 10411]
          Length = 365

 Score = 60.1 bits (144), Expect = 5e-07,   Method: Compositional matrix adjust.
 Identities = 58/229 (25%), Positives = 107/229 (46%), Gaps = 10/229 (4%)

Query: 118 FPSTKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP  K  E +    ++ +  LK L+  T +     +I     GIF  I +  +K  A AT
Sbjct: 113 FPHIKHSENIEKICQIQAKKLKKLIRETIYCPDKNDISREYTGIFIEIEQNYIK--ATAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RL   + +    I    + I+       I R+  S +  +++  SE+ I +  E+L 
Sbjct: 171 DHYRLINIKTENTNDIE--ANFIIENAGAALINRL--SLEGEIELYKSENEILIKQENLV 226

Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           +S ++I G FP+Y Q ++  S    + +    L+ AV R SI+S  +    K+ +    L
Sbjct: 227 VSSKIISGNFPDYNQILLDRSTSNSVEIEKEKLKDAVKRSSILSENKDITAKIDIKEKTL 286

Query: 296 CMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVV 342
            +   N +   A + +N+     E  ++I  N K++L+ ++ I +D V+
Sbjct: 287 TLIGQNSEGETAEDIINITPIETEKDLNIKLNSKFILDFLNQIEADTVI 335


>gi|169834795|ref|YP_001715742.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408902|gb|ACA57312.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 381

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 74/291 (25%), Positives = 137/291 (47%), Gaps = 24/291 (8%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    E       + 
Sbjct: 65  GNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAKEHTISDILKS 123

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           + +YS  L + V K+L++ T +A+A +E R  L G +  + +  +K+ A+  DG RL   
Sbjct: 124 DIIYSLNLDAKVFKSLIDTTSYAVAQDESRPILLGQYIELEKNLIKITAL--DGFRLVSN 181

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE-------SL 235
              I  Q   M  I          LR LSS   DS+ +V L+++     +E       ++
Sbjct: 182 SAKIENQHEDMILIHANN------LRNLSSLIDDSTEEVILNKNNNKAIVEVKNKNYVAI 235

Query: 236 SMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           + S  +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS   +   + +  +
Sbjct: 236 AAS-NIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294

Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341
           K  + +D N  +      +N+  N  +    I FN KY+L+ + NI++ E+
Sbjct: 295 KDSLEIDGNSSVASMKGEVNIINNNFQEEFTIGFNPKYILDALKNINTKEI 345


>gi|294785230|ref|ZP_06750518.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
 gi|294486944|gb|EFG34306.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
          Length = 364

 Score = 60.1 bits (144), Expect = 6e-07,   Method: Compositional matrix adjust.
 Identities = 85/398 (21%), Positives = 172/398 (43%), Gaps = 49/398 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++               L  E NI+    + YL     +EF  
Sbjct: 61  IESEGQVLIKPALLLEYIK---------------LVEEDNINFEKKDGYL-IVNNAEFSI 104

Query: 121 TKEEEYVYSFELASSVLKNLVERT-HFAMATEEIRYYLNG------IFFHINE--EDLKL 171
             +  Y    E+   V+    E T  F M+ E++++  N       +F  I    +D  L
Sbjct: 105 LDDNTYPELTEIIPIVIA--TENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNIL 162

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+TD  RL   + ++   I K   I+VP  ++  I +IL   D    ++ S+ ++ + 
Sbjct: 163 ELVSTDSFRLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVT 220

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVK 287
            +    + +L+   FP+++ +I  +N DK    N   L  A+ +   V+  SS       
Sbjct: 221 WKDAYFTCKLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVAT 280

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            +   ++L ++  + +  K  + +N+      + +  N KY+ E IDN      VD  ++
Sbjct: 281 FNFKGNQLVISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDN------VDKNII 333

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++++NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 334 --IEATNSSSMLRFMEERNE-------NYIYLIMPVNI 362


>gi|194246592|ref|YP_002004231.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali]
 gi|193806949|emb|CAP18381.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali]
          Length = 376

 Score = 59.7 bits (143), Expect = 7e-07,   Method: Compositional matrix adjust.
 Identities = 80/360 (22%), Positives = 170/360 (47%), Gaps = 31/360 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   +++   LE L    +II  K   P+   + ++     L ++++     I   I   
Sbjct: 1   MHFKIKKEIFLEQLLKIQKIIPHKTFFPIFLGIKIKIKKDFLILESTDGNASIKIKIKNE 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENE-----LGTEVNISHGDSNFYLQ 111
              +   GS+ +S     +I++K+  D  ++   K+NE     + TE+ + +      L 
Sbjct: 61  SLKIQEEGSLLISGKYFIEIIKKINSDFIEM---KKNENNSLTIKTEL-LEYKLKLMNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            FP+  F      E+    E+  ++ K +++    + A +E +  L GI F   +  LK 
Sbjct: 117 YFPKINFFL----EFKEKIEIKGNIFKKIIKEIKISAAKDEKKSILTGINFIYQKPFLK- 171

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHL 230
             ++TD  RL+  ++ +     K  +I++  K + E+ +IL   +D ++++  +  ++ L
Sbjct: 172 -VLSTDYFRLSQKKIKLDFN-YKNFNIVIHYKILEELSKILEYYEDDNLQIYFNSKKMFL 229

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVK 287
               L     L++GEFP  Q ++  +   ++++N   L + ++RVS +S+  I     VK
Sbjct: 230 KANDLFFQTTLLEGEFPKTQEILENNFIYKIKLNKEKLIKTLERVSFISNKDINDVSVVK 289

Query: 288 LSLSSD-KLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           L++  + K+ ++  N ++G  +E +    N+ + E  ++I FN KYL +I+      E++
Sbjct: 290 LTIKKEKKIEISSYNDEIGNIVEEILPLENILFKE--IEISFNAKYLEDILKVFLVKEII 347


>gi|28492969|ref|NP_787130.1| DNA polymerase III subunit beta [Tropheryma whipplei str. Twist]
 gi|28572177|ref|NP_788957.1| DNA polymerase III subunit beta [Tropheryma whipplei TW08/27]
 gi|28410308|emb|CAD66694.1| DNA polymerase III, beta chain [Tropheryma whipplei TW08/27]
 gi|28476009|gb|AAO44099.1| DNA polymerase III beta chain [Tropheryma whipplei str. Twist]
          Length = 377

 Score = 59.7 bits (143), Expect = 8e-07,   Method: Compositional matrix adjust.
 Identities = 67/313 (21%), Positives = 141/313 (45%), Gaps = 25/313 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  +   +    R+I  +   P+   +L++A +  + +     E        A+
Sbjct: 1   MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYETSAKVEFSAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V   L+  I +KL D   +   KE+E   +++++ G  N+ L   P +E+P 
Sbjct: 61  VIEGGKVLVPGTLISSISQKLPD-EPVEISKEDE---KISLTCGPVNYILNLMPIAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    + + S      V +   + A ++I   + GI   ++ E ++L    TD +R
Sbjct: 117 LPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDISAVITGINLRLSNESIELT--GTDRYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLNIESLSM 237
           +AV  ++ V+      S+IV  K + E+ + L + +S + V +    E+++ +  ES + 
Sbjct: 175 VAVKTLNSVSGHPSDSSVIVSSKTLFEVSKTLGNLESEISVFIKNDGENKV-IGFESGNK 233

Query: 238 SVR--LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-------------SSVR 282
           +V   LI G +P    +          +  ++  ++  RVS++             ++V 
Sbjct: 234 TVTSLLISGNYPPVAKLFTEETGHYAILKTSDFLESTKRVSVVVERDEPIEFSFVKNTVT 293

Query: 283 IQAVKLSLSSDKL 295
           I+   ++L+S+K+
Sbjct: 294 IKGSGIALASEKV 306


>gi|3953450|gb|AAC83392.1| DnaN [Mycobacterium avium]
          Length = 258

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Compositional matrix adjust.
 Identities = 61/255 (23%), Positives = 109/255 (42%), Gaps = 18/255 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A 
Sbjct: 13  LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DIVR L +   I F+ +   G +V ++ G + F L +    ++P+
Sbjct: 73  IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNQVALNCGSARFSLPTMAVEDYPT 128

Query: 121 --TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T  EE   +  L + +    + +   A   ++    L GI   I+ + + L   ATD 
Sbjct: 129 LPTLPEE---TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVLA--ATDR 183

Query: 179 HRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRI------LSSKDSSVKVSLSESRIHLN 231
            RLAV E+   A    +  +++VP K + E  R       +  +    +V   +  + ++
Sbjct: 184 FRLAVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDGSDVRCRWGRAQVCGKDGLLGIS 243

Query: 232 IESLSMSVRLIDGEF 246
                 + RL+D EF
Sbjct: 244 GNGKRSTTRLLDAEF 258


>gi|33322987|gb|AAQ07230.1|AF496538_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 116

 Score = 59.3 bits (142), Expect = 9e-07,   Method: Composition-based stats.
 Identities = 40/115 (34%), Positives = 61/115 (53%), Gaps = 3/115 (2%)

Query: 89  FFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAM 148
           F  E + G ++ I+   +++ +     S +P   E     SF L S  L+ L+ +T FA+
Sbjct: 2   FTFEVKEGNQIQITSDKADYVINGLDASAYPRLXEIAGT-SFSLPSKTLRELITQTVFAV 60

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203
           +TEE R  L G+ F      +K  AVATD HRL+   VDI A  ++  S+I+P K
Sbjct: 61  STEESRPTLTGVNFSFKNGQIK--AVATDSHRLSQRIVDIAAGPSEDLSLIIPGK 113


>gi|42560562|ref|NP_975013.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492058|emb|CAE76655.1| DNA POLYMERASE III, BETA CHAIN [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320426|gb|ADK69069.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 375

 Score = 59.3 bits (142), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 73/358 (20%), Positives = 154/358 (43%), Gaps = 32/358 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIP---------VSCHVLLQANDGLLEIKA----S 47
           M  ++ R  +L+ L  A ++I+ KN  P         +S  V + A  G+L  K+     
Sbjct: 1   MNFSINRIVLLDNLSKAAKVIDYKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60

Query: 48  GPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDS 106
             ++E+           G + +    + +++R+L D     S  ++NEL     I   +S
Sbjct: 61  NSDLEVKQE--------GKVLLKPKYVLEMLRRLDDEFVTFSMVEDNELI----IKTDNS 108

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           +F +      ++P     E    F L    +K  + +   +M     +  L G+   +  
Sbjct: 109 DFSIGVLNSEDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTN 168

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
              +     TD  R++   ++I +   +   I +P K   E+ ++L + ++ +K+ + E 
Sbjct: 169 N--QAIFSTTDSFRISQKILEIQSNNNEDIDITIPFKTALELPKVLDNAEN-LKIIIVEG 225

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA- 285
            I   I+++     LIDG+FPN Q   P      + V   ++ + + R  +++   + A 
Sbjct: 226 YITFIIDNVIFQSNLIDGKFPNVQIAFPTKFQTIITVKQKSILKVLSRFDLVADDGLPAI 285

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEV 341
           V + ++ DK+       ++GK  E  + +  E    + I FN ++L++ I  ++ D +
Sbjct: 286 VNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLNEDRI 343


>gi|260469755|ref|ZP_05813914.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259028487|gb|EEW29804.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 384

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 41/186 (22%), Positives = 84/186 (45%), Gaps = 12/186 (6%)

Query: 103 HGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162
           HG     +   P ++F         +S  + ++ L  L+     AM  +E R+++ G+  
Sbjct: 102 HGKGRLTMPILPGADFFLIGAGTQDWSMAIRANELVELLRTCVSAM--DETRHFIQGVLL 159

Query: 163 HINEEDLKLCAV---ATDGHRL---AVAEVDIVAQIAKMP----SIIVPRKAVGEILRIL 212
           H+   +    A+   ATDGHR+    V   ++    A+       I +P + V E++RI 
Sbjct: 160 HVAAGEDGASALRTAATDGHRVHTVGVEAPELTGGFAERQEGHQGITIPDRTVKELIRIF 219

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
              +S V +S ++  + +  E++ ++ +LID  F +Y  ++       + V    L  A+
Sbjct: 220 DGDESEVTLSGAKGIVTVEGEAIRVTSKLIDAAFADYARLLQAPGAFRISVAAKALDAAI 279

Query: 273 DRVSIM 278
            R+ ++
Sbjct: 280 GRLLVL 285


>gi|254192274|ref|ZP_04898763.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur
           52237]
 gi|157987469|gb|EDO95245.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur
           52237]
          Length = 203

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 37/109 (33%), Positives = 61/109 (55%), Gaps = 10/109 (9%)

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI--AKMPSIIVPRKAVGEI 208
           ++IRYYLNG+     E++ +L  VATDGHRL V  ++   ++   +  SIIVP   +   
Sbjct: 20  DDIRYYLNGVMVEAREKETRL--VATDGHRLVVYRIECNNEVPAGESISIIVPNAVID-- 75

Query: 209 LRILSSKDSSVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIP 254
            R+  SKD+   V+   +   R+  + + + ++   +D  FPNY+ VIP
Sbjct: 76  -RLKLSKDAPDAVTFESADAGRMFFSHDDIRVTFTPVDANFPNYRKVIP 123


>gi|237751288|ref|ZP_04581768.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879]
 gi|229372654|gb|EEO23045.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879]
          Length = 370

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 179/385 (46%), Gaps = 50/385 (12%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I++++S + + + +    + +KN I ++ ++ L+  D  L +KA+  EI I   +  +  
Sbjct: 2   ISIDKSILDQAITNMQSAVNKKNVIDITANISLETIDNNLILKATDHEIYIRTILKTN-S 60

Query: 63  VCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS-------- 112
           + G I   V+   + + ++ L D             +EV I   + N Y++         
Sbjct: 61  LQGEIKCAVNGEAIGNFIKGLND-------------SEVIIEQDNENLYIKQNNASVFKI 107

Query: 113 --FPESEFPSTK----EEEYVYSFELASS-VLKNLVERTHFAMATEEIRYYLNGIFFHIN 165
             F  +E P ++    E++   S ++ ++ +L++L +  H     E     + GI F + 
Sbjct: 108 PIFEINELPFSQNYKNEQQGFQSIDINNNFLLQSLKKIMHCCNDKETFNIAMQGILFEVK 167

Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLS 224
           ++++ +   ATD  RL   +     +  K    I+P+K + EIL++ S+  +  +K    
Sbjct: 168 DKEINI--AATDSKRLGYIQKQ--TECDKDFISIIPKKTLQEILKLFSTDCELYIKPIQD 223

Query: 225 ESRIH---LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
            ++I       E++    +LI+  FP+++++I  +N  +L     N  + +  ++ M+++
Sbjct: 224 SNKIETLCFVSENIEFYAKLINANFPDFKSII--ANKPQLPTLKINKEKILKTLNQMNAI 281

Query: 282 RIQAVKLSLSSDKLCM-TVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISS 338
             Q  K++  S+K+   T++  +   A  ++N   N    PM I    ++LLE I NI  
Sbjct: 282 -CQRAKVTFESNKIIFETLEGINGASASITINDIENHKAEPMTIGLVNRHLLECISNIKQ 340

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKD 363
           DE    E++  +D     +F+  KD
Sbjct: 341 DEF---EII--IDDPYKPIFVITKD 360


>gi|270684738|ref|ZP_06222840.1| DNA polymerase III, beta subunit domain protein [Haemophilus
           influenzae HK1212]
 gi|270316195|gb|EFA28165.1| DNA polymerase III, beta subunit domain protein [Haemophilus
           influenzae HK1212]
          Length = 136

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S   
Sbjct: 1   SISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLSSSS 60

Query: 64  -CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P+  
Sbjct: 61  ENGTFTIPAKKFLDICRTLSDESEITVIFEQDRAL---VQSGRSRFTLATQPAEEYPNLT 117

Query: 123 EEEYVYSFELASSVLKNLV 141
           + +    FEL  + L+ L+
Sbjct: 118 DWQSEVDFELPQNTLRRLI 136


>gi|332829044|gb|EGK01708.1| hypothetical protein HMPREF9455_01856 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 180

 Score = 58.9 bits (141), Expect = 1e-06,   Method: Compositional matrix adjust.
 Identities = 51/193 (26%), Positives = 94/193 (48%), Gaps = 17/193 (8%)

Query: 195 MPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
           MPS++     +  IL+  +   D  + + ++ + +     S S+   L++G +PNY++VI
Sbjct: 1   MPSLL----KIATILKGSIKPSDELINIFINGNSVRFEYGSESIVATLLEGNYPNYRSVI 56

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI-ESMN 312
           P +NDK L +  + L  A+ RVS+ ++     VKL LS+D + ++  + D   A  E++ 
Sbjct: 57  PQNNDKVLSIGKSELNGAIKRVSVFANQSSSLVKLELSNDIIKLSAQDIDFSTAADETVA 116

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372
             Y+   + I F    L E+I  I +  +   ++ F  D S +++     DK        
Sbjct: 117 CEYSNKQIAIGFKGHLLTELISAIPTPNM---QMSFS-DPSRATLITPVDDKSGD----- 167

Query: 373 KVNAFYVLMPMRI 385
                Y+LMPM +
Sbjct: 168 --QLTYLLMPMML 178


>gi|295099697|emb|CBK88786.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Eubacterium
           cylindroides T2-87]
          Length = 196

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 52/190 (27%), Positives = 85/190 (44%), Gaps = 15/190 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  +++R    E L    R I   + +P    + +      + +  S   + I   I   
Sbjct: 1   MHFSIDRKYFYEKLSVVSRAISVFSPLPALSGICIDVKSDQIILTGSDSNVSIRSTIVRG 60

Query: 58  ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL--GTEVNISHGDSNFYLQS 112
                 +D  GSI + +  L +I+RK+ D   +    E EL   + V IS  +  F L  
Sbjct: 61  ELNQLDIDSTGSIVIESKYLLEIIRKM-DCTMV----ELELVDYSLVRISSDNGQFNLNG 115

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P+    +   SFEL S  LK++V +T FA + ++ R  LNG+ F  +   L  C
Sbjct: 116 IQSNEYPNIDFSQPTNSFELKSKDLKDIVSQTSFACSDKDTRPVLNGVNFKASNNTL-YC 174

Query: 173 AVATDGHRLA 182
           +  TD +RLA
Sbjct: 175 S-GTDSYRLA 183


>gi|121582887|ref|YP_973329.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans
           CJ2]
 gi|120596149|gb|ABM39587.1| DNA polymerase III beta subunit family protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 366

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 64/260 (24%), Positives = 128/260 (49%), Gaps = 30/260 (11%)

Query: 54  TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
           TG +P  V       ++A L+ +I+       + S  ++ E   ++ +S G +   L  +
Sbjct: 53  TGTLPNLV-----FQLTAKLVLNIINNCATETKCSISQDKE---DLRLSFGGARIKLTRY 104

Query: 114 PESE---FPSTKEEEY---VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
            E E   F    ++E+   +  FE + ++ K ++  + F  + ++ RY L G++F   + 
Sbjct: 105 TEKEVDFFKWNSKDEHNEAIGHFE-SQNLRKAIMSVSRF-YSDDDQRYQLRGVYFQSIQG 162

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---- 223
            L L A  T+G RLA    ++V  +     +I+  + V  ++ I+ + +  V++S+    
Sbjct: 163 RLVLAA--TNGTRLAEKITNLV--VRDFRPMIIGGEYVEALVSIIKNDEEDVEISIRGGN 218

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
             + +  +  + S+   LI G +P+Y+++IP S D  ++VN   L  A+DR   M +V  
Sbjct: 219 DATAVIFSTRNFSIKCPLIGGAYPSYRSIIPAS-DHHVQVNAAALIAALDR---MEAVSG 274

Query: 284 QAVKLSLSSDKLCMTVDNPD 303
             V L+ S++   +TV+ PD
Sbjct: 275 NFVHLNFSNE--IVTVETPD 292


>gi|227494190|ref|ZP_03924506.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831924|gb|EEH64307.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 269

 Score = 58.5 bits (140), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 57/258 (22%), Positives = 115/258 (44%), Gaps = 17/258 (6%)

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI-VAQI 192
           + +    + +   A AT+E    L GI   I  ED  +  +ATD +RLA+       A+ 
Sbjct: 21  AQLFAQTITQVSVAAATDETIPLLTGIRMEI--EDDTITLLATDRYRLAMRTFKWEPAEP 78

Query: 193 AKMPSIIVPRKAVGEILRILSSKDS-----SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
               S++V  K + ++ + ++S  S     S   +  +S I     +   +  L+DGE+P
Sbjct: 79  GISTSMLVKAKTLNDVAKSMTSAGSVEIAFSTTETTGQSLIGFRAGTRHTTSTLMDGEYP 138

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
             + + P +      VN   L +AV RVS+++  +  +V+L  S+ ++ +     D  +A
Sbjct: 139 PVRRLFPETTATTALVNRNELLEAVKRVSLVAEQKT-SVRLGFSAGQVVLEAGQDDNAQA 197

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            E+++       +   FN +YL   +  +++       V F    +     + G+++   
Sbjct: 198 NETIHAQLQGEDIRTAFNPQYLQAGLSALNT-----QFVRFSFTDAAKPAVLTGQNEPL- 251

Query: 368 NNKDNKVNAFYVLMPMRI 385
              ++ +   Y+LMP+R 
Sbjct: 252 --AEDDLAFRYLLMPIRF 267


>gi|8037924|gb|AAF71536.1|AF255728_2 DNA polymerase III beta subunit [Streptococcus pyogenes]
          Length = 189

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 53/193 (27%), Positives = 89/193 (46%), Gaps = 19/193 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           ++ ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S
Sbjct: 2   IQFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVS 61

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQS 112
                  +   G+I + A    +I+  L D   IS   KE E   +V ++ G S   L+ 
Sbjct: 62  NENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIE-QHQVVLTSGKSEITLKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDL 169
               ++P  +E        L + +LK+++  T FA + +E R  L G+  HI   N +D 
Sbjct: 118 KDVDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGV--HIVLSNHKDF 175

Query: 170 KLCAVATDGHRLA 182
           K  AVATD HR++
Sbjct: 176 K--AVATDSHRMS 186


>gi|282863706|ref|ZP_06272764.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
 gi|282561407|gb|EFB66951.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
          Length = 373

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 80/365 (21%), Positives = 149/365 (40%), Gaps = 63/365 (17%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+   ER  + E +  A R++  ++ +PV   +LL A+DG L +  SG + E + A+ A 
Sbjct: 1   MEFLSERGALAESVAWAARVLPARSPVPVLGGLLLDASDGRLRV--SGLDFEASAAVEAE 58

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                 G + V    L DI + L DG      +    G+   ++  D+ F L   P  ++
Sbjct: 59  AATVRPGRVLVMGRRLLDICKVLPDGPVRCAVE----GSRFTVTASDARFGLSVLPLDDY 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHF---------AMATEEIRYYLNGIFFHINEEDL 169
           P+                L+  V+   F         A   ++    L GI   ++   +
Sbjct: 115 PALPPLPE----------LRGAVDAGEFAAAVADVAVAAGRDDTLPALTGIRLRLDGSTM 164

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
            L   A+D +R AV  +   A   ++ + ++V  + + EI R L ++   V V+L    +
Sbjct: 165 TLA--ASDRYRYAVRTLPWKAADPEVAADVLVSARRLTEIARTL-ARSGPVGVALDTGSV 221

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---------- 278
                    +VRL+DG  P++  +   ++      +   L +AV RVS++          
Sbjct: 222 GFEHAGARTTVRLLDGGLPSHDTLFALADPAVAVTDRAALVEAVRRVSVVADGGSPLQLT 281

Query: 279 ------SSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
                 +SV +QA  +  ++S +L  T++  D                M + FN  YL++
Sbjct: 282 FTGGPDASVLLQAGYEDDVASQRLPATLEGADG---------------MTVAFNPAYLMD 326

Query: 332 IIDNI 336
            + + 
Sbjct: 327 ALSSF 331


>gi|237744670|ref|ZP_04575151.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
 gi|229431899|gb|EEO42111.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
          Length = 364

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 81/394 (20%), Positives = 170/394 (43%), Gaps = 41/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117
           ++  G + +   LL + + KL +   I+F K++   +      S  D N Y    PE   
Sbjct: 61  IESEGQVLIKPALLLEYI-KLIEEENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVA 175
             P     E    F +       L+E+  F   ++  +    N I     +  L+L  V+
Sbjct: 116 IIPIVVATENTLKFTI-------LLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VS 166

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RL   +  +   + +   ++VP  ++  I +I    D    ++ S+ R+ L  +  
Sbjct: 167 TDSYRLVYMKKTLNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDA 224

Query: 236 SMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLS 291
             S +L+   FP+++ +I  +N DK+   N   L  A+ +   V+  S+        +  
Sbjct: 225 YFSCKLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFK 284

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            ++L ++  + +  K  + +N+      + +  N KY+ E IDN+  + ++        +
Sbjct: 285 GNQLVISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------E 335

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 336 ATNSSSMLRFMEERNE-------NYIYLIMPVNI 362


>gi|33322985|gb|AAQ07229.1|AF496537_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 153

 Score = 58.2 bits (139), Expect = 2e-06,   Method: Compositional matrix adjust.
 Identities = 36/140 (25%), Positives = 73/140 (52%), Gaps = 4/140 (2%)

Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
           E+ +I+   D  +KV L +S+I    E+LS   RL++G +P+   ++P  +   ++   +
Sbjct: 3   ELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRLLEGAYPDVDRLLPTESTTSVQFAVS 62

Query: 267 NLRQAVDRVSIMSSV-RIQAVKLSLS-SDKLCMTVDN-PDMGKAIESMNV-YYNECPMDI 322
           +L Q + R S+++   R  AV+++L+ +D+  +   N P++GK  E +         + I
Sbjct: 63  DLMQTLSRASLLTHANRTNAVQMTLNVADQTVLVSGNSPEVGKIEEEVGFSSLTGRDLTI 122

Query: 323 CFNYKYLLEIIDNISSDEVV 342
            FN  Y+   +    +D V+
Sbjct: 123 SFNPDYMAAALRASVTDSVI 142


>gi|237738340|ref|ZP_04568821.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420220|gb|EEO35267.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 376

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 94/398 (23%), Positives = 177/398 (44%), Gaps = 41/398 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPV-SCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MKI +ER + L+ L    + I      P+ SC  +    D L     +  E  IT  +  
Sbjct: 1   MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLF-FCGTNLETTITTEMKC 59

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL---QSFPE 115
             V   G I     L+ + +++L+D  +   F E +    +  S   S F L   + FP+
Sbjct: 60  KEVIESGKIVFQHQLVEEYLKELKD--EFVVFSEIDGNLVIESSDSSSEFSLMNVEDFPK 117

Query: 116 ---SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E  S KEE     F++ S  L  ++E+  +A ++      +N +   +  E+ KL 
Sbjct: 118 ILVDEDFSQKEE----IFKINSIELAEILEKVKYAASSSSDNLSINCV--RMENENKKLK 171

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLN 231
            + TD +RL   E +I  +I +   + +P   V  + ++L S +S+ +       +I   
Sbjct: 172 FITTDTYRLVYLEKEI-EKINENIDVSIPLNTVEALTKLLRSIESTDISFYFINRQIFFK 230

Query: 232 IESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIM----SSVRIQAV 286
           +E + +  R+ID  FPNY+ ++   S +K+L +N     + + R++I     +  +  A 
Sbjct: 231 MEEVLVISRIIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGA- 289

Query: 287 KLSLSSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
             +   +K  M V    ++ K  E + V Y    + I  N K+L + +  ++ ++    +
Sbjct: 290 --TFYLEKKEMQVHGVNEVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNK----D 343

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +     +SNSSV I+ ++ +         +  YVLMP+
Sbjct: 344 ITLEFIASNSSVKIKEEEAN---------DYLYVLMPL 372


>gi|126348431|emb|CAJ90154.1| putative DNA polymerase III beta chain [Streptomyces ambofaciens
           ATCC 23877]
          Length = 383

 Score = 57.4 bits (137), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 56/243 (23%), Positives = 102/243 (41%), Gaps = 27/243 (11%)

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FA  T+     L GI F +  + L L  VATD +R+AVA VD  A        +VP   
Sbjct: 164 RFAAGTDPGLPMLAGILFDLEGDSLHL--VATDRYRMAVARVDAGAHDGPRVQALVPVPL 221

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
            G  +R L S D  V +++    + L       + + +D +FP+Y+ ++   + +   V+
Sbjct: 222 AG-AMRALLSHDEPVGLTVGGDSVTLETGGGRTAGQCLDHDFPDYRRLVHLPSGRRTLVD 280

Query: 265 CTNLRQAVDRVSIMSSVRIQAV--KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
               R+A++       VR   V  +   S D   + V +        ++    ++ P D 
Sbjct: 281 VPVFRKALE----SGPVRTGEVSEQDGTSHDLSVLRVAD----DGTVTVREDGDDHPDDF 332

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
             +  YLLE ++         + +V    +  + + IR         + +  + F +LMP
Sbjct: 333 AVDRGYLLEALEAGGR-----ERLVLEFGAPTAPLAIR---------RPDDASTFSLLMP 378

Query: 383 MRI 385
           +R+
Sbjct: 379 VRL 381


>gi|89098180|ref|ZP_01171065.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
 gi|89087037|gb|EAR66153.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
          Length = 368

 Score = 57.0 bits (136), Expect = 4e-06,   Method: Compositional matrix adjust.
 Identities = 80/346 (23%), Positives = 153/346 (44%), Gaps = 33/346 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +E+  + + +    +++  K++IP+   VL+QA    L   AS     I   +P  
Sbjct: 1   MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60

Query: 59  ---ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ--SF 113
               +++  GS   +    +D+ +KL+    ISF     +  +V +S   +   L+    
Sbjct: 61  EGAVNIESEGSAVFTKDC-FDVTKKLK--GSISF---ELIDQKVIVSQDKTKTRLEFGVM 114

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P    E        +     N+V +T FA ++ E+R  L GI    +++      
Sbjct: 115 DAEDYPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNF-- 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL         Q  +  S+ V  K + ++L+   S D S +V +  + +++   
Sbjct: 173 VATDSHRLGKV---TTGQSEETMSVTVHAKKLEQVLK---SFDFSTEVLVFPTELNIAFA 226

Query: 234 SLSM--SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +       RL+DG FP+   +IP    ++L +N      ++D +S +S  R   V LS++
Sbjct: 227 NGHTIYYTRLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAIS--REGIVMLSIN 284

Query: 292 SDKLCMTVDNPDMG-KAIESMNVYYNEC---PMDICFNYKYLLEII 333
                + V+   +G  A  S  + Y       +++ F+ KY+L+ +
Sbjct: 285 G----LFVELAALGDTAKGSREIAYESFEGESLEVGFSAKYVLDAL 326


>gi|23193212|gb|AAN14435.1|AF319585_2 DNA polymerase III beta chain [Bacillus cereus]
          Length = 160

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 82/163 (50%), Gaps = 13/163 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  ENGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
               +E+P   + E  + F++ + +LK+++ +T FA++T E R
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETR 159


>gi|308069816|ref|YP_003871421.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681]
 gi|305859095|gb|ADM70883.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa E681]
          Length = 372

 Score = 57.0 bits (136), Expect = 5e-06,   Method: Compositional matrix adjust.
 Identities = 87/404 (21%), Positives = 182/404 (45%), Gaps = 53/404 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V+ + + E L  A + I  K  IP+    L++A +  + +  +     I   +  +
Sbjct: 1   MNIVVDSALLAEALEDASKAISTKAIIPILSCFLIEATEDRVTVTGTDDRATIQSFVEEN 60

Query: 61  VDV--CGSITVSAHLLYDIVRKL--------QDGAQISFFKENELGTEVNISHGDSNFYL 110
           +D+   GS  +   LL DI++K+        ++G Q++    N+   E+ I+       +
Sbjct: 61  IDIKETGSAALPKVLL-DILQKINGKIELQVKNGNQVTIKSRNK---EIEITG------M 110

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDL 169
                   P   E E+V   E+    LKNL+++T FA   +      + G+  ++  +  
Sbjct: 111 PPEEYPAPPEINENEFV---EIKGKDLKNLIKKTVFAADIDGKSLPIITGV--NVILQTG 165

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           K+  VAT+ HRLA AE +    I  + + ++  + + E+ +I++  D  V+   S+S   
Sbjct: 166 KIQMVATNRHRLAHAEREF--DIGNIGTAVIEARGIIELQKIVNDND-EVEFGFSKSSGG 222

Query: 230 LNIESLSMSVRLI------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVR 282
             I + + + R I      +G +P+  + +      E+ VN   L ++++ + ++    +
Sbjct: 223 EVIYAFARTERFIFYSRVLEGIYPDTTHTMAIKAVTEITVNRKELIESLELIFTLAKEEK 282

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
             AV  S+S  ++ +     + GKA E++  + +N    ++  N KY+L+ +  + +D  
Sbjct: 283 NNAVTFSVSEKEINIRGKGKETGKATENITPISFNGENFNLTLNAKYVLDALKVLEND-- 340

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                V  L  + S   +  +  +S         +FY+++P R+
Sbjct: 341 -----VITLGYTGSLKPLTLRSDES---------SFYIVLPYRV 370


>gi|23193215|gb|AAN14437.1|AF319586_2 DNA polymerase III beta chain [Bacillus cereus]
 gi|23193221|gb|AAN14441.1|AF319588_2 DNA polymerase III beta chain [Bacillus thuringiensis serovar
           galleriae]
          Length = 160

 Score = 56.6 bits (135), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 43/163 (26%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
               +E+P   + E  + F++ + +LK+++ +T FA++T E R
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETR 159


>gi|197294171|ref|YP_001798712.1| DNA polymerase III beta subunit [Candidatus Phytoplasma
           australiense]
 gi|171853498|emb|CAM11337.1| DNA polymerase III beta subunit [Candidatus Phytoplasma
           australiense]
          Length = 378

 Score = 56.2 bits (134), Expect = 7e-06,   Method: Compositional matrix adjust.
 Identities = 50/217 (23%), Positives = 112/217 (51%), Gaps = 9/217 (4%)

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           L  S  K +++  + + +  E R  L G      ++ LK  A+ATD  R++  ++ +   
Sbjct: 133 LKVSSFKKMIKEVNISSSKNEKRPILTGSNLIYEKKTLK--ALATDSFRISYKKIKLDFP 190

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                ++++P K++ E+++IL   D+ ++K+   + +I L I++L     L++G +P  Q
Sbjct: 191 YFDF-NMVIPNKSLEELIKILEYYDNKNLKIYSDDKKIFLKIDNLWFCTSLLEGNYPQIQ 249

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSDKLC-MTVDNPDMGK 306
                +    + +N  ++ + ++R+S+  S   V    V   L+ +K+  +++ N ++G 
Sbjct: 250 EFNLKNYPFVVHLNKDDVMKVLERISLFFSKEEVNKNIVLFKLTEEKIIEISISNENLGT 309

Query: 307 AIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           A+E +  +       +I FN K+L +I+  ++S E+V
Sbjct: 310 ALEKIIPLKVTSEKFEIAFNAKHLEDILKVLTSSEIV 346


>gi|289807127|ref|ZP_06537756.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 102

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Compositional matrix adjust.
 Identities = 34/116 (29%), Positives = 67/116 (57%), Gaps = 14/116 (12%)

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
           QA  R +I+S+ + + V+L +S ++L +T +NP+  +A E ++V Y    M+I FN  Y+
Sbjct: 1   QAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYV 60

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L++++ +  + V       R+  ++S   ++ +D  S+       +A YV+MPMR+
Sbjct: 61  LDVLNALKCETV-------RIMLTDSVSSVQIEDAASQ-------SAAYVVMPMRL 102


>gi|20372920|emb|CAD30325.1| DNA polymerase III subunit protein [Streptomyces caespitosus]
          Length = 117

 Score = 56.2 bits (134), Expect = 9e-06,   Method: Composition-based stats.
 Identities = 39/121 (32%), Positives = 60/121 (49%), Gaps = 6/121 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGSLSLSGFDYEVSARVSVDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQD-GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V+  G++ VS  LL DI R L +   +IS       G  V +  G S F L + P  E+P
Sbjct: 61  VEEDGTVLVSGRLLADICRALPNRPVEIS-----TDGVRVTVVCGSSRFTLHTLPVEEYP 115

Query: 120 S 120
           +
Sbjct: 116 A 116


>gi|152965735|ref|YP_001361519.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151360252|gb|ABS03255.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 84/385 (21%), Positives = 152/385 (39%), Gaps = 28/385 (7%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--PASVD 62
           V+   + E L     +I R+  +P+   V L      L ++ +  ++  T  +  P    
Sbjct: 24  VDSKALAEALTDVNALIGRRPPVPILAGVRLDVEGDQLTLRRTNYDVVNTATLQLPQVGH 83

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPESEFPST 121
              S  VSA     IVR +  GA I     +  G E     GD   + L +    ++P+ 
Sbjct: 84  PARSTVVSASAFAAIVRAIGPGASIILTLLHRSGREFLRIAGDGVTYQLITMDAGDWPAI 143

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF-FHINEEDLKLCAVATDGHR 180
             +E  +     ++V  + V+    A       + L  I    + E    L A ATD  R
Sbjct: 144 PADEVQH----IATVSADDVQALALAGTAATSDFTLPIIHAVRLTERQGSLVAAATDRFR 199

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   +V+ +  +      +VP  A+  I R L+ ++  V +S  +  I   + S S  V+
Sbjct: 200 LL--DVNTLHPVPAGFQALVPTDALEHIAR-LAKREGEVTISTVDEFIVFVVGSRSCRVK 256

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV- 299
            +DGE+P   ++ P  +     V+  +L +A+ R+ ++++ R   V+L+   + + +   
Sbjct: 257 CVDGEYPKVDSLWPPESPIAATVDRGDLARALRRL-MVATPRNTPVELAFGRNVVVLIAG 315

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           D  D+                D   N ++LL+ +D +       D V F        V I
Sbjct: 316 DKTDLDATTTVATTLTGAEAFDAALNPQFLLDGLDAVGG-----DRVTFAFTVPYRPVVI 370

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
            G           + N  Y+ MP+R
Sbjct: 371 TG----------GRPNTRYLQMPVR 385


>gi|92112114|gb|ABE73748.1| DNA polymerase subunit B [Azoarcus communis]
          Length = 125

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 41/139 (29%), Positives = 73/139 (52%), Gaps = 14/139 (10%)

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P+YQ VIP ++   + +    L  A+ R +I+++ + + V++ L    L +   N +  +
Sbjct: 1   PDYQRVIPQNHPGLVALPRQALLSALQRAAILTNEKFRGVRMVLDDGALRIVSSNSEQEE 60

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           A E + + Y+   +DI FN  YLL++++N+SS     + + +R +  NSS  I       
Sbjct: 61  AQEELEIDYHGAKLDIGFNVTYLLDVLNNLSS-----ETIEWRFNDGNSSALI-----TL 110

Query: 367 KNNKDNKVNAFYVLMPMRI 385
             N+  K    YV+MPMRI
Sbjct: 111 PGNEHFK----YVVMPMRI 125


>gi|23193217|gb|AAN14438.1|AF319587_1 DNA polymerase III beta chain [Bacillus thuringiensis serovar
           berliner]
          Length = 160

 Score = 55.8 bits (133), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 42/163 (25%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
               +E+P   + E  + F++ + +LK+++ +T FA++T E R
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETR 159


>gi|149200630|ref|ZP_01877633.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155]
 gi|149136279|gb|EDM24729.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155]
          Length = 153

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 43/138 (31%), Positives = 69/138 (50%), Gaps = 5/138 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +   +  A  +I  + T+ +  H LL      L I A+G +  IT  + A+
Sbjct: 1   MKFTIERDRLNNAVKKAGSVISARPTVSIMGHFLLDVQANHLVITATGLDQTITLTLEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDG-AQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++  G  TVSA +L  +V++L +G   +S    +E G  VN+    + F LQS    +FP
Sbjct: 61  IEQEGKATVSAKILSQLVQRLPNGDVSVSL---DERGM-VNVVCARNAFSLQSLDPLQFP 116

Query: 120 STKEEEYVYSFELASSVL 137
               EE    F +++S L
Sbjct: 117 IEGREESRREFMISTSQL 134


>gi|329944739|ref|ZP_08292818.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529875|gb|EGF56765.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 350

 Score = 55.5 bits (132), Expect = 1e-05,   Method: Compositional matrix adjust.
 Identities = 86/368 (23%), Positives = 155/368 (42%), Gaps = 31/368 (8%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
           +PV   V L+A    L + +   E+     + A V+  G + VS  LL DI + L +   
Sbjct: 1   MPVLAGVRLEAKGSSLVLASFDYEVSAHCEVVADVEEDGVVLVSGRLLADIAKALPN--- 57

Query: 87  ISFFKENEL---GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVER 143
               K  +L   G +V +S G + F L +    ++P+      V +  + +  L   V +
Sbjct: 58  ----KPVDLEVEGNKVAVSCGSARFSLAAMAADDYPALPVMPAV-AGTIDAHDLARAVAQ 112

Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV-AQIAKMPSIIVPR 202
              A + ++    L  +   I  E   L  +ATD +RLA+ E+    A      + ++  
Sbjct: 113 VSIAASRDDTLPLLTSV--QIEVEGSSLVLMATDRYRLAMRELTWSPANTDLSTTALLKA 170

Query: 203 KAVGEILRIL-SSKDSSVKVSLSESR---IHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           + + ++ + L SS D +V +S   +    I         +  L DG++P  + + P S  
Sbjct: 171 RTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGRRTTSLLTDGDYPPVRRLFPESTS 230

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318
               V    L  AV RVS+++  R   + +S +   L +     D  +A E +  +    
Sbjct: 231 IHATVGTDELMAAVRRVSLVAD-RSTPIHMSFTQGNLELDAGQGDDAQATEQLVAHLEGD 289

Query: 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS--VFIRGKDKDSKNNKDNKVNA 376
            +   FN  YLL+ +  ++   V       RLD +++S    + G D      +D+    
Sbjct: 290 DISTAFNPGYLLDGLGALNQPYV-------RLDFTHASKPAVLTGMDS-IGGTEDSTFR- 340

Query: 377 FYVLMPMR 384
            Y+LMP+R
Sbjct: 341 -YLLMPIR 347


>gi|229587310|ref|YP_002860348.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
 gi|229260366|gb|ACQ51403.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
          Length = 381

 Score = 55.5 bits (132), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 71/291 (24%), Positives = 137/291 (47%), Gaps = 24/291 (8%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    E       + 
Sbjct: 65  GNINISVTILNAIIKKMSN-EEISLFIDPKNNDVLKIKQGRNNSKIALAKEHTISDILKS 123

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           + +YS  L   + K+L+E T +A+A +E R  L G +  +    +K+ A+  DG RL   
Sbjct: 124 DIIYSLNLNPKIFKDLIESTSYAVAQDESRPILLGQYIELENNLIKITAL--DGFRL--- 178

Query: 185 EVDIVAQIAKMPSIIVPRKAV-GEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRL 241
               ++  AK+ +    +  +    L+ LSS   DS+ ++ L+++     +E  + +   
Sbjct: 179 ----ISNSAKIENKHKDKILIHANNLKNLSSLIDDSTEELILNKNNNKAIVEVKNKNYAA 234

Query: 242 IDG------EFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           I        EF  Y+ +I    S   ++ V+   L   VDR+S++SS   +   + +  +
Sbjct: 235 IAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHILMKLN 294

Query: 294 KLCMTVD-NPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEV 341
           K  + +D N  +      +N+  N  E    I FN KY+L+ + NI++ E+
Sbjct: 295 KDSIEIDGNSSVASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEI 345


>gi|320009941|gb|ADW04791.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 367

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 82/373 (21%), Positives = 146/373 (39%), Gaps = 40/373 (10%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC 64
           +ER  + + +  A R++  ++ +PV   +LL A+ G L +  SG + E +  +       
Sbjct: 1   MERGALTDAVSRAARVLPARSPVPVLGGLLLDADTGRLRV--SGLDFEASARVETQAHTV 58

Query: 65  --GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G + V    L  I + L +G      +    G+ + ++   S F L   P  ++P+  
Sbjct: 59  RPGKVLVMGRRLLAICKVLPEGPVECAVE----GSRLTVTGDGSRFGLSILPLDDYPALP 114

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V    + +    + V +   A   ++    L GI   ++   + L   ATD +R A
Sbjct: 115 PLPDVRG-TVDAGEFGSAVAQVAVAAGRDDTLPTLTGIRLGLDGSTMTLA--ATDRYRFA 171

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           V  +   A+   + + ++V  + + EI R L  +   V VS+              +VRL
Sbjct: 172 VRTLPFEAKAPDVTADVVVSARRLTEIARSL-GRSGRVDVSVDGGSAGFEHAGTRTTVRL 230

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD- 300
           +DG  P +  +    +     ++   L +AV RVS+++               L MT   
Sbjct: 231 LDGRLPRHDKLFALGDTAVAVMDRARLVEAVRRVSVVAD----------GGSPLQMTFSP 280

Query: 301 NPDMGKAIESM---NVYYNECP--------MDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            PD    +++    +V     P        M + FN  YL    D +SS E  D  V  R
Sbjct: 281 GPDGSALLQAGFEDDVAAQRLPAAFDGAGEMTVAFNPAYL---TDALSSFE--DATVRMR 335

Query: 350 LDSSNSSVFIRGK 362
           L        I G+
Sbjct: 336 LLGPGQRAMISGE 348


>gi|222874687|gb|EEF11818.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score = 55.1 bits (131), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 37/134 (27%), Positives = 66/134 (49%), Gaps = 5/134 (3%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SIT 68
           +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D    + T
Sbjct: 164 VLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGDTGDFTTT 223

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYV 127
           V A  L DI++ +     +S   +     ++ +  G S F LQ+ P  +FP  +E   + 
Sbjct: 224 VGARKLIDILKTMPGDQTVSLETQQ---AKMVLKGGKSRFTLQTLPAEDFPLVQEAAAFG 280

Query: 128 YSFELASSVLKNLV 141
            SF +   VLK+L+
Sbjct: 281 PSFSVPQKVLKDLL 294


>gi|195941090|ref|ZP_03086472.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           EC4024]
          Length = 102

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 33/116 (28%), Positives = 67/116 (57%), Gaps = 14/116 (12%)

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
           QA  R +I+S+ + + V+L +S +++ +T +NP+  +A E ++V Y    M+I FN  Y+
Sbjct: 1   QAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEAEEILDVTYAGAEMEIGFNVSYV 60

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L++++ +  + V       R+  ++S   ++ +D  S+       +A YV+MPMR+
Sbjct: 61  LDVLNALKCENV-------RILLTDSVSSVQIEDAASQ-------SAAYVVMPMRL 102


>gi|229496336|ref|ZP_04390056.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC
           35406]
 gi|229316914|gb|EEN82827.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC
           35406]
          Length = 392

 Score = 54.7 bits (130), Expect = 2e-05,   Method: Compositional matrix adjust.
 Identities = 87/409 (21%), Positives = 175/409 (42%), Gaps = 47/409 (11%)

Query: 1   MKITVERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+  +   ++  LL +  +++    N +PV  + L +  D  L +  S   +   G +P 
Sbjct: 1   MQFKIASGELSTLLQNQSKVVPTVYNEMPVLTYFLFEIQDNNLYVTGSDGMMRSRGVLPV 60

Query: 60  SVDVCGSITVSAHL--LYDIVRKLQDG-------AQISFFKENELGTEVNISHGDSNFYL 110
            +   G+ T + H   + + V+ L D        A+ S       G  +  +  D   Y 
Sbjct: 61  -ITSEGNATFAVHPKDILEYVKGLPDQPLLFDYEAETSTLLMTFEGGYIRFATSDGELYP 119

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           +   + E     E E  +   +++S ++  ++ T  +MA +  R  L  + F    + L 
Sbjct: 120 KDDKDRE-----EAETAHVATMSASAMRRGLDLTIGSMAEDARRPILASVCFDFKAKYLA 174

Query: 171 LCAVATD----GHRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSS-KDSSVKV 221
           + A +T+         V +  IV     ++       +P+K    +  +L+S  D  V +
Sbjct: 175 MVATSTEILTKYTDSTVVDPSIVEPADVRVQSPYQFCLPQKMANFLRALLASFTDEEVTL 234

Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSS 280
           S ++ +    + ++  S RL++G +P Y +VIP  N   + +       A+ R+ S MSS
Sbjct: 235 SHTDRKAFFKVGNIEASTRLVEGRYPPYDSVIPRDNPHRISIEGRLFVPAIKRMNSFMSS 294

Query: 281 VRIQAV-KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP----MDICFNYKYLLEIIDN 335
                V ++S+  + + +++D  D+ +A +   +   E P    M + F     + +I+ 
Sbjct: 295 PNHPLVMQMSIEGNLMTVSMDVQDVRQAEQRFPI---ENPSNLSMKLRFKVHSFIALINT 351

Query: 336 ISSDEVVDDEVVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           I S       +VF + D+S + V I      S+N KD ++    V+MP+
Sbjct: 352 IES-----SNIVFEIADASRAMVII-----PSENPKDTELTN--VIMPI 388


>gi|229113628|ref|ZP_04243075.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
 gi|228669824|gb|EEL25220.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
          Length = 418

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 128/293 (43%), Gaps = 29/293 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 25  MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 84

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            DV     G++ V   ++ D+ +KL          +N L     +  G S F L +F  S
Sbjct: 85  EDVSVISEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNTL----QVISGKSKFTLNTFKVS 139

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 140 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 197

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +    +K  S+K+S  ++   L+ ++ +
Sbjct: 198 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 256

Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
              + ++G++P+         Y+NVI         VN   + +A++++ + +S
Sbjct: 257 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 301


>gi|324323932|gb|ADY24975.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 394

 Score = 54.7 bits (130), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 128/293 (43%), Gaps = 29/293 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            DV     G++ V   ++ D+ +KL          +N L     +  G S F L +F  S
Sbjct: 61  EDVSVISEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNTL----QVISGKSKFTLNTFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +    +K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
              + ++G++P+         Y+NVI         VN   + +A++++ + +S
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277


>gi|298345814|ref|YP_003718501.1| DNA polymerase III subunit beta [Mobiluncus curtisii ATCC 43063]
 gi|315654388|ref|ZP_07907296.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|298235875|gb|ADI67007.1| DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 43063]
 gi|315491423|gb|EFU81040.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           ATCC 51333]
          Length = 380

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  + E +  + R I  +  + V   V ++A +  +E  +   E+     + A 
Sbjct: 1   MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116
            V   G   V   LL +  R L   A +  F      TE N  H   G     L      
Sbjct: 61  EVTEPGVAVVDGKLLSETARALPSRADLVKF-----ATEDNYLHITCGSFKQKLIMMHSE 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P   +     + ++ ++   + + +   A + +E    L GI   +  +  KL  +AT
Sbjct: 116 EYPPLPQMPE-SAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLS---ESRIHLNI 232
           D +R+A+ E+           ++V  K + +  + I ++ D  V V  +    S I L  
Sbjct: 173 DRYRMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
                + ++ DG +P+ + + P   +    V      +   RV+I+SS +  Q + L  +
Sbjct: 233 NGRVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFT 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           S +L     N     A +++    N   + + FN + LLE +  I       DE   RL 
Sbjct: 293 SGQLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAI-------DEPYARLS 345

Query: 352 SSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             + +  V I G+ +++   +DN +   Y++MP+R
Sbjct: 346 FKDEAKPVVITGQKEET--GEDN-LTFRYLIMPIR 377


>gi|256026449|ref|ZP_05440283.1| DNA polymerase III, beta chain [Fusobacterium sp. D11]
 gi|289764461|ref|ZP_06523839.1| DNA polymerase subunit III [Fusobacterium sp. D11]
 gi|289716016|gb|EFD80028.1| DNA polymerase subunit III [Fusobacterium sp. D11]
          Length = 364

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 170/394 (43%), Gaps = 41/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117
           ++  G + +   LL + + KL +   I+F K++   +      S  D N Y    PE   
Sbjct: 61  IESEGQVLIKPALLLEYI-KLIEEENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVA 175
             P     E    F +       L+E+  F   ++  +    N I     +  L+L  V+
Sbjct: 116 IIPIVVATENTLKFTI-------LLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VS 166

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RL   +  +   + +   ++VP  ++  I +I    D    ++ S+ R+ L  +  
Sbjct: 167 TDSYRLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDA 224

Query: 236 SMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLS 291
             S +L+   FP+++ +I  +N DK+   N   L  A+ +   V+  S+        +  
Sbjct: 225 YFSCKLLSLNFPDFRPLINNTNHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFK 284

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            ++L ++  + +  K  + +N+      + +  N KY+ E IDN+  + ++        +
Sbjct: 285 GNQLVISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------E 335

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++NSS  ++  ++ ++       +  Y++MP+ I
Sbjct: 336 ATNSSSMLKIMEEGNE-------DYIYLVMPVNI 362


>gi|315657690|ref|ZP_07910572.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492162|gb|EFU81771.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 380

 Score = 54.3 bits (129), Expect = 3e-05,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  + E +  + R I  +  + V   V ++A +  +E  +   E+     + A 
Sbjct: 1   MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116
            V   G   V   LL +  R L   A +  F      TE N  H   G     L      
Sbjct: 61  EVTDPGVAVVDGKLLSETARALPSRADLVKF-----ATEDNYLHITCGSFKQKLIMMHSE 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P   +     + ++ ++   + + +   A + +E    L GI   +  +  KL  +AT
Sbjct: 116 EYPPLPQMPE-SAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE---SRIHLNI 232
           D +R+A+ E+           ++V  K + +  + I ++ D  V V  +    S I L  
Sbjct: 173 DRYRMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
                + ++ DG +P+ + + P   +    V      +   RV+I+SS +  Q + L  +
Sbjct: 233 NGRVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFT 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           S +L     N     A +++    N   + + FN + LLE +  I       DE   RL 
Sbjct: 293 SGQLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAI-------DEPYARLS 345

Query: 352 SSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             + +  V I G+ +++   +DN +   Y++MP+R
Sbjct: 346 FKDEAKPVVITGQKEET--GEDN-LTFRYLIMPIR 377


>gi|260494531|ref|ZP_05814661.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
 gi|260197693|gb|EEW95210.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
          Length = 364

 Score = 54.3 bits (129), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 79/394 (20%), Positives = 170/394 (43%), Gaps = 41/394 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE--LGTEVNISHGDSNFYLQSFPESE- 117
           ++  G + +   LL + + KL +   I+F K++   +      S  D N Y    PE   
Sbjct: 61  IESEGQVLIKPALLLEYI-KLIEEENINFEKKDGYLIVNNAEFSILDDNTY----PELTE 115

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVA 175
             P     E    F +       L+E+  F   ++  +    N I     +  L+L  V+
Sbjct: 116 IIPIVVTTENTLKFTI-------LLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VS 166

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RL   +  +   + +   ++VP  ++  I +I    D    ++ S+ R+ L  +  
Sbjct: 167 TDSYRLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDA 224

Query: 236 SMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR---VSIMSSVRIQAVKLSLS 291
             S +L+   FP+++ +I  +N DK+   N   L  A+ +   V+  S+        +  
Sbjct: 225 YFSCKLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFK 284

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            ++L ++  + +  K  + +N+      + +  N KY+ E IDN+  + ++        +
Sbjct: 285 GNQLVISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------E 335

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++NSS  ++  ++ ++       +  Y++MP+ I
Sbjct: 336 ATNSSSMLKIMEEGNE-------DYIYLVMPVNI 362


>gi|156564023|ref|YP_001429765.1| DNA-directed DNA polymerase III beta chain [Bacillus phage
           0305phi8-36]
 gi|154622720|gb|ABS83600.1| DNA-directed DNA polymerase III beta chain [Bacillus phage
           0305phi8-36]
          Length = 361

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 73/298 (24%), Positives = 126/298 (42%), Gaps = 31/298 (10%)

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF---KENELGTEVNISHGDSNFYLQSF 113
           +PA V   G   V A      V KL    Q   F   K   L  +   + G   F   S+
Sbjct: 57  VPAGVKETGKFVVKAKKFIAYVSKLD--VQTVMFAISKGGGLQLKTKPAKGQQTFI--SY 112

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAM--ATEEIRYYLNGIFFHINEEDLKL 171
            E  FP T + +  +SF+++  V K L+    FA   + E  R  L GI F  +   LKL
Sbjct: 113 QEESFPKTPKLQSKFSFDMSGLVFKKLINNVAFAADSSREASRPILQGIQFVSDGNLLKL 172

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              +TDG  +A    +   +I   P ++++ +K++    ++++  D  V +   E+  H 
Sbjct: 173 T--STDGFTIA----NYKRKIKSDPFNVVLGKKSLVNCAKVVAD-DEKVTMQACENN-HF 224

Query: 231 NIESLSMSVRL--IDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIM---SSVRIQ 284
            +++   +  L  + G FPN  NV+P    D +   +   L   +DR SIM   S +   
Sbjct: 225 IVKTGLATYHLPTLAGNFPNTDNVLPGKEFDLQFLADRDELLGLLDRASIMIDGSGI--- 281

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
              L     K+ +T  N   G   E +         ++  + K +++++ +I SD + 
Sbjct: 282 ---LQFEKGKVTLT-GNSQEGNFSEFIMTKLQGEATEVSVSVKRIIDVVKHIDSDMIT 335


>gi|21219691|ref|NP_625470.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)]
 gi|6468432|emb|CAB61592.1| putative DNA polymerase III beta chain [Streptomyces coelicolor
           A3(2)]
          Length = 386

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 60/249 (24%), Positives = 106/249 (42%), Gaps = 32/249 (12%)

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FA   +     L G+ F +  + L L  VATD +R+AVA +  V        +IVP   
Sbjct: 160 RFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPAPL 217

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           V + +R L   D   + ++   R+ L       S R +  +FP+Y+ ++     + + V+
Sbjct: 218 V-DAMRALLGDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVTVD 276

Query: 265 CTNLRQAVD----RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI----ESMNVYYN 316
               R+A++    RV+       QA  +S+ S     TVD+   G  I     + +   +
Sbjct: 277 VPEFREALESGPVRVAEDREPGRQARDVSVLS-----TVDD---GTVIVCGEGAPDEEAD 328

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
                +  +  YLL+ +     D +V   + F   ++ + + IR  D +          A
Sbjct: 329 GAAHHVGVDRGYLLDALAAADRDRLV---LEFG-PAATAPLAIRRMDDE---------GA 375

Query: 377 FYVLMPMRI 385
           F VLMP+R+
Sbjct: 376 FSVLMPVRL 384


>gi|256789227|ref|ZP_05527658.1| DNA polymerase III beta chain [Streptomyces lividans TK24]
 gi|289773118|ref|ZP_06532496.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
 gi|289703317|gb|EFD70746.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
          Length = 372

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 61/249 (24%), Positives = 106/249 (42%), Gaps = 32/249 (12%)

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FA   +     L G+ F +  + L L  VATD +R+AVA +  V        +IVP   
Sbjct: 146 RFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPAPL 203

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           V + +R L   D   + ++   R+ L       S R +  +FP+Y+ ++     + + V+
Sbjct: 204 V-DAMRALLDDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVAVD 262

Query: 265 CTNLRQAVD----RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE--- 317
               R+A++    RV+       QA  +S+ S     TVD+   G  I   +   +E   
Sbjct: 263 VPEFREALESGPVRVAEDREPGRQARDVSVLS-----TVDD---GTVIVCGDGAPDEEAD 314

Query: 318 -CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
                +  +  YLL+ +     D +V   + F   ++ + + IR  D +          A
Sbjct: 315 GAAHHVGVDRGYLLDALAAADRDRLV---LEFG-PAATAPLAIRRMDDE---------GA 361

Query: 377 FYVLMPMRI 385
           F VLMP+R+
Sbjct: 362 FSVLMPVRL 370


>gi|23193209|gb|AAN14433.1|AF319584_2 DNA polymerase III beta chain [Bacillus cereus]
          Length = 156

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 80/159 (50%), Gaps = 13/159 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V   GSI + A    +IV+KL ++  +IS   EN L T+  I+ G S F L 
Sbjct: 61  ENGKEIVEVKQSGSIVLQAKYFSEIVKKLPKETVEISV--ENHLMTK--ITSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
               +E+P   + E  + F++ + +LK+++ +T FA++T
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155


>gi|332294863|ref|YP_004436786.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM
           14796]
 gi|332177966|gb|AEE13655.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM
           14796]
          Length = 370

 Score = 53.9 bits (128), Expect = 4e-05,   Method: Compositional matrix adjust.
 Identities = 56/237 (23%), Positives = 110/237 (46%), Gaps = 50/237 (21%)

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218
           G+ F   E+ L + A  TDG RLA+ ++++  +I    +  + +K   E+++     D++
Sbjct: 170 GVNFKTKEKTLTIAA--TDGFRLAIFKINLDEEIDM--NFTISKKCAQEVIKF----DAT 221

Query: 219 VKVSL-SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           V +S  +++   L+     +SV+ ++ E+PNY+  IP  N  +  +N    R+   +  I
Sbjct: 222 VPISYQTQTHWVLSTHEKMLSVKKLNYEYPNYEKAIPSDNKYKFYIN----REDFIKKLI 277

Query: 278 MSSVRIQAVKLSLSSDKLCMT-----VDNPDMGKAIESMNVYYNECPMDICFNYK--YL- 329
            +S + + VK+SL  + L +      +    + K++E +         DI F +K  YL 
Sbjct: 278 FTSSQSEIVKISLKDNTLNIQSSDSRIKTKTLIKSVEEVK--------DIEFLFKSSYLI 329

Query: 330 --LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             L+I D        ++EV+F     N  + +           +N +N  Y+ +P R
Sbjct: 330 DGLKIFD--------EEEVLFTYKDENKPITL-----------ENNINTTYITLPAR 367


>gi|170581927|ref|XP_001895901.1| DNA polymerase III, beta subunit [Brugia malayi]
 gi|158597001|gb|EDP35242.1| DNA polymerase III, beta subunit, putative [Brugia malayi]
          Length = 99

 Score = 53.9 bits (128), Expect = 5e-05,   Method: Compositional matrix adjust.
 Identities = 27/89 (30%), Positives = 51/89 (57%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          M+ ++ R+ +L  L     ++ER+N I +   + ++A  G +++ A+  +I I  ++ A 
Sbjct: 1  MRFSIGRTXLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 60

Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISF 89
          V   G + VSAH L+DIV+KL     ++F
Sbjct: 61 VSTEGEVKVSAHTLHDIVKKLPADLNVNF 89


>gi|304390482|ref|ZP_07372435.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326238|gb|EFL93483.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 380

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 86/395 (21%), Positives = 163/395 (41%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  + E +  + R I  +  + V   V ++A +  +E  +   E+     + A 
Sbjct: 1   MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH---GDSNFYLQSFPES 116
            V   G   V   LL +  R L   A +  F      TE N  H   G     L      
Sbjct: 61  EVTEPGVAVVDGKLLSETARALPSRADLVKF-----ATEDNYLHITCGSFKQKLIMMHSE 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P   +     + ++ ++   + + +   A + +E    L GI   +  +  KL  +AT
Sbjct: 116 EYPPLPQMPE-SAGKVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLS---ESRIHLNI 232
           D +R+A+ E+           ++V  K + +  + I ++ D  V V  +    S I L  
Sbjct: 173 DRYRMALKEMPWAGVQGGDQDLVVKAKNLSDAAKNIATAGDVEVAVGSANNPASLIGLAA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
                + ++ DG +P+ + + P   +    V      +   RV+I+SS +  Q + L  +
Sbjct: 233 NGRVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFT 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           S +L     N     A +++    N   + + FN + LLE +  I       DE   RL 
Sbjct: 293 SGQLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAI-------DEPYARLS 345

Query: 352 SSNSS--VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             + +  V I G+ +++   +DN +   Y++MP+R
Sbjct: 346 FKDEAKPVVITGQKEET--GEDN-LTFRYLIMPIR 377


>gi|23193183|gb|AAN14415.1|AF319576_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 160

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIEQTGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETR 159


>gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 561

 Score = 53.5 bits (127), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 45/192 (23%), Positives = 93/192 (48%), Gaps = 20/192 (10%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
           F  A +EIR  LNGI  + NE       +A DG+RLA+ + +      K P I+      
Sbjct: 356 FQKAKDEIRPILNGICINKNE------FIALDGYRLALRKGNFET---KEPVIVA----- 401

Query: 206 GEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            +++++++    + +VK+  +++ +    + L +      G + NY ++IP + + ++ +
Sbjct: 402 ADLIKVINKVKYECNVKIYYNDNYVKFKFDDLEIVGYRRQGNYINYNSIIPENYNTKVTL 461

Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDIC 323
               ++  +D +      + + V L   +DKL +  +N D+    ES+ +     P++I 
Sbjct: 462 K---IKPILDILKDYKKNKFKVVDLDFQNDKLIIKANN-DIATVEESITIELQGEPLEIS 517

Query: 324 FNYKYLLEIIDN 335
           FN  YL++   N
Sbjct: 518 FNADYLIDAFKN 529


>gi|23193186|gb|AAN14417.1|AF319577_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 160

 Score = 53.1 bits (126), Expect = 6e-05,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 81/163 (49%), Gaps = 13/163 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   ++  GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIEQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETR 159


>gi|23193206|gb|AAN14431.1|AF319583_2 DNA polymerase III beta chain [Bacillus cereus]
          Length = 156

 Score = 53.1 bits (126), Expect = 7e-05,   Method: Compositional matrix adjust.
 Identities = 41/159 (25%), Positives = 78/159 (49%), Gaps = 13/159 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
            D          GSI + A    +IV+KL +D  +IS   EN   T+  I  G S F L 
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDTVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
               +E+P   + E  + F++ + +LK+++ +T FA++T
Sbjct: 117 GLDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155


>gi|71893361|ref|YP_278807.1| DNA polymerase III subunit beta [Mycoplasma hyopneumoniae J]
 gi|71851488|gb|AAZ44096.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae J]
          Length = 378

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 144/334 (43%), Gaps = 23/334 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAI 57
           MK T+E+  I   +      I      P+S   L     GL  I  +     ++ I    
Sbjct: 1   MKFTIEKKIIEWQIERMQSAILNNINSPLSSFFLKLTRSGLFIISTNSELSYKVFINKKD 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   GS  +    L D++RK     Q+SF   + +G+E+ +   D+ F   +   S 
Sbjct: 61  LIEIHDVGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDALFSKTTRDSSF 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP    E+      + +   K  ++ T FA      +  L+ I  ++  E   L   ATD
Sbjct: 116 FPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             R A  +++I  +     +I V  K + +   I    D  +++++  S+I    ++L++
Sbjct: 174 TSRFASEKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTI 229

Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             R+   E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LSLS + L
Sbjct: 230 QSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNAL 289

Query: 296 CMTVDNPDMGKA-IESMNVYYNECPMDICFNYKY 328
              +   D G++ +++ NV      +D  FN ++
Sbjct: 290 KGYISQYDSGQSNVQTKNV------LDFRFNPRF 317


>gi|303250285|ref|ZP_07336485.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252050|ref|ZP_07533950.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650901|gb|EFL81057.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860519|gb|EFM92532.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 205

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Compositional matrix adjust.
 Identities = 36/161 (22%), Positives = 75/161 (46%), Gaps = 12/161 (7%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208
              ++R  LNG++F++       C  AT+GH     + ++ A   K    I+P + + +I
Sbjct: 23  GKNDVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPKRKGFIMPNELIKQI 78

Query: 209 LRILS----SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC--SNDKELR 262
           L I       K  +++V+ ++  I   +  +++  + I+G+FPN   V P   SN+K   
Sbjct: 79  LLIKPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLCAVYPLKESNNKTKT 138

Query: 263 VNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLCMTVDN 301
            N   +  A     ++  +  +   +  +LS +   +++DN
Sbjct: 139 YNANYINLAAKATKLLKPIIGKDAGIDFNLSDNSSILSIDN 179


>gi|213422866|ref|ZP_03355900.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 59

 Score = 52.8 bits (125), Expect = 9e-05,   Method: Composition-based stats.
 Identities = 28/58 (48%), Positives = 38/58 (65%), Gaps = 3/58 (5%)

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
           YYLNG+ F     +L+   VATDGHRLAV  + + A +    S+IVPRK V E++R+L
Sbjct: 1   YYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLPSH-SVIVPRKGVIELMRML 55


>gi|23193189|gb|AAN14419.1|AF319578_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
 gi|23193197|gb|AAN14425.1|AF319580_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
 gi|23193200|gb|AAN14427.1|AF319581_2 DNA polymerase III beta chain [Bacillus mycoides]
 gi|23193203|gb|AAN14429.1|AF319582_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 160

 Score = 52.8 bits (125), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 40/163 (24%), Positives = 80/163 (49%), Gaps = 13/163 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   +   GSI + A    +IV+KL ++  +IS   EN   T+  I  G S F L 
Sbjct: 61  DAGKEIVEIKQSGSIILQAKYFSEIVKKLPKETVEISV--ENHFMTK--IKSGKSEFNLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
               +E+P   + E  + F++ + +LK+++ +T FA+++ E R
Sbjct: 117 GLDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETR 159


>gi|170596510|ref|XP_001902790.1| DNA polymerase III, beta subunit [Brugia malayi]
 gi|158589311|gb|EDP28360.1| DNA polymerase III, beta subunit, putative [Brugia malayi]
          Length = 190

 Score = 52.4 bits (124), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 30/100 (30%), Positives = 55/100 (55%), Gaps = 1/100 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R+ +L  L     ++ER+N I +   + ++A  G +++ A+  +I I  ++ A 
Sbjct: 21  MRFSIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 80

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100
           V   G + VSAH L+DIV+KL     ++ F+ NE    V 
Sbjct: 81  VSTEGEVKVSAHTLHDIVKKLPADLDVN-FEVNEFANSVT 119


>gi|72080344|ref|YP_287402.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448]
 gi|71913468|gb|AAZ53379.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448]
          Length = 378

 Score = 52.0 bits (123), Expect = 1e-04,   Method: Compositional matrix adjust.
 Identities = 72/334 (21%), Positives = 144/334 (43%), Gaps = 23/334 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAI 57
           MK T+E+  I   +      I      P+S   L     GL  I  +     ++ I    
Sbjct: 1   MKFTIEKKIIEWQIERMQSAILNNINSPLSSFFLKLTRSGLFIISTNSELSYKVFINKKD 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   GS  +    L D++RK     Q+SF   + +G+E+ +   D+ F   +   S 
Sbjct: 61  LIEIYDVGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDALFSKTTRDSSF 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP    E+      + +   K  ++ T FA      +  L+ I  ++  E   L   ATD
Sbjct: 116 FPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             R A  +++I  +     +I V  K + +   I    D  +++++  S+I    ++L++
Sbjct: 174 TSRFASEKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTI 229

Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             R+   E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LSLS + L
Sbjct: 230 QSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNAL 289

Query: 296 CMTVDNPDMGKA-IESMNVYYNECPMDICFNYKY 328
              +   D G++ +++ NV      +D  FN ++
Sbjct: 290 KGYISQYDSGQSNVQTKNV------LDFRFNPRF 317


>gi|326777822|ref|ZP_08237087.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658155|gb|EGE43001.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 375

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 15/286 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLL----EIKASGPEIEITGA 56
           M+  +ERS + + +  A R++  ++ +PV   +LL    G       ++ SG + E +  
Sbjct: 1   MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60

Query: 57  IPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +    +V   G + V    L DI + L +G      +    G+   +S   + F L   P
Sbjct: 61  VDVDAEVVRPGKVLVMGRRLLDICKVLPEGPVECAVE----GSRFTVSGDGARFGLSVLP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++PS      +    + + +    V     A   ++    L GI   ++ + + L A 
Sbjct: 117 LDDYPSLPPLPQLRG-AVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAA- 174

Query: 175 ATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
            TD +R AV  +   A    +   ++V  + + EI R L  +   V V+L          
Sbjct: 175 -TDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSLG-RSGLVSVALDAGSAGFEHA 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
               +VRL++G  P ++ +   ++     V+   L +AV RVS+++
Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVA 278


>gi|41057666|ref|NP_958120.1| gp15 [Burkholderia phage Bcep43]
 gi|40737653|gb|AAR89306.1| gp15 [Burkholderia phage Bcep43]
          Length = 193

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 144 THFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVP 201
           TH   A ++IRYYLNGI        DL +  VATDGHR  +  +   A    +  S+I+P
Sbjct: 14  TH--AAKQDIRYYLNGILLEAAVNGDLHI--VATDGHRAFIGRIAGGATSWPEFTSLIIP 69

Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             A+      +++K   V V+ + +R  L     S     IDG FP+++ ++P
Sbjct: 70  TDAI-----KVAAKKGDVTVAPAGARYALG----STLFDAIDGRFPDWRRIVP 113


>gi|23752326|ref|NP_705641.1| gp15 [Burkholderia phage Bcep781]
 gi|23507193|gb|AAN38016.1| gp15 [Burkholderia phage Bcep781]
          Length = 193

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/113 (32%), Positives = 57/113 (50%), Gaps = 15/113 (13%)

Query: 144 THFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVP 201
           TH   A ++IRYYLNGI        DL +  VATDGHR  +  +   A    +  S+I+P
Sbjct: 14  TH--AAKQDIRYYLNGILLEAAVNGDLHI--VATDGHRAFIGRIAGGATSWPEFTSLIIP 69

Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
             A+      +++K   V V+ + +R  L     S     IDG FP+++ ++P
Sbjct: 70  TDAI-----KVAAKKGDVTVAPAGARYALG----STLFDAIDGRFPDWRRIVP 113


>gi|182437190|ref|YP_001824909.1| DNA polymerase III subunit beta [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465706|dbj|BAG20226.1| putative DNA polymerase III beta subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 375

 Score = 52.0 bits (123), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 62/286 (21%), Positives = 120/286 (41%), Gaps = 15/286 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLL----EIKASGPEIEITGA 56
           M+  +ERS + + +  A R++  ++ +PV   +LL    G       ++ SG + E +  
Sbjct: 1   MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60

Query: 57  IPASVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +    +V   G + V    L DI + L +G      +    G+   +S   + F L   P
Sbjct: 61  VDVDAEVVRPGKVLVMGRRLLDICKVLPEGPVECAVE----GSRFTVSGDGARFGLSVLP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++PS      +    + + +    V     A   ++    L GI   ++ + + L A 
Sbjct: 117 LDDYPSLPPLPQLRG-AVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTLAA- 174

Query: 175 ATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
            TD +R AV  +   A    +   ++V  + + EI R L  +   V V+L          
Sbjct: 175 -TDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSLG-RSGLVSVALDAGSAGFEHA 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
               +VRL++G  P ++ +   ++     V+   L +AV RVS+++
Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVA 278


>gi|229051325|ref|ZP_04194839.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
 gi|228722018|gb|EEL73449.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
          Length = 394

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 29/293 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            DV     G++ V   ++ D+ +KL          +N L     +  G S F L +F  S
Sbjct: 61  EDVSVIAEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNIL----QVISGKSKFTLNTFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +     K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
              + ++G++P+         Y+NVI         VN   + +A++++ + +S
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277


>gi|207093110|ref|ZP_03240897.1| DNA polymerase III subunit beta [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 227

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 44/195 (22%), Positives = 92/195 (47%), Gaps = 19/195 (9%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS- 213
           L GI    +++   L  V TD  RL+  +++ ++     +  S I+P++A+ EIL++   
Sbjct: 7   LAGILMQFDQKHQTLSVVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYE 66

Query: 214 --SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
             S  S   +++ E+  H      +   +LIDG +P+YQ ++P        +     +++
Sbjct: 67  NFSFKSDGMLAVVENETH------TFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKES 120

Query: 272 VDRVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYN---ECPMDICFNYK 327
           +   S +SS     +KL+L  ++ L  ++D+     A  S+ +      E    +  N K
Sbjct: 121 IKLCSSLSST----IKLTLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAK 176

Query: 328 YLLEIIDNISSDEVV 342
           + LE ++ + + + V
Sbjct: 177 FFLEALNALGTTQFV 191


>gi|229125330|ref|ZP_04254425.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
 gi|228658129|gb|EEL13874.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
          Length = 394

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 127/293 (43%), Gaps = 29/293 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            DV     G++ V   ++ D+ +KL          +N L     +  G S F L +F  S
Sbjct: 61  EDVSVIAEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNIL----QVISGKSKFTLNTFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +     K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
              + ++G++P+         Y+NVI         VN   + +A++++ + +S
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277


>gi|399398|sp|P31861|DPO3B_RHOCA RecName: Full=DNA polymerase III subunit beta
 gi|250529|gb|AAB22385.1| DnaN=3' of GyrB [Rhodobacter capsulatus, SB1003, Peptide, 70 aa]
          Length = 70

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 26/60 (43%), Positives = 36/60 (60%)

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  VATDGHRLA  +  +      MP +IVPRK V E+  +L   ++ + VS+SE+R  L
Sbjct: 10  LRCVATDGHRLARIDAVLPEGANGMPGVIVPRKTVNELRNVLDDDEAQIAVSVSETRCAL 69


>gi|312600975|gb|ADQ90230.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 168]
          Length = 362

 Score = 51.6 bits (122), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 59/268 (22%), Positives = 123/268 (45%), Gaps = 20/268 (7%)

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            GS  +    L D++RK     Q+SF   + +G+E+ +   D+ F   +   S FP    
Sbjct: 51  VGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDALFSKTTRDSSFFPEINF 105

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           E+      + +   K  ++ T FA      +  L+ I  ++  E   L   ATD  R A 
Sbjct: 106 EQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATDTSRFAS 163

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            +++I  +     +I V  K + +   I    D  +++++  S+I    ++L++  R+  
Sbjct: 164 EKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTIQSRIFT 219

Query: 244 GEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
            E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LSLS + L   +  
Sbjct: 220 IEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNALKGYISQ 279

Query: 302 PDMGKA-IESMNVYYNECPMDICFNYKY 328
            D G++ +++ NV      +D  FN ++
Sbjct: 280 YDSGQSNVQTKNV------LDFRFNPRF 301


>gi|257437734|ref|ZP_05613489.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257200041|gb|EEU98325.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 173

 Score = 51.2 bits (121), Expect = 2e-04,   Method: Compositional matrix adjust.
 Identities = 37/129 (28%), Positives = 68/129 (52%), Gaps = 3/129 (2%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83
           ++TIPV   +LL+A    L +     E+ I   I A+V   G + ++A LL  +V ++  
Sbjct: 41  RSTIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIDANVKEPGEVVLNAKLLSSMVSRMPS 100

Query: 84  GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVER 143
           G QI+  +  E G +  I  G + F +QS   ++FP         +  + + VL++++ER
Sbjct: 101 G-QINI-QSAENG-KTTIQSGVAQFEIQSMNPTDFPELPNTGAEETLNIKTGVLRDMIER 157

Query: 144 THFAMATEE 152
           T +A++ +E
Sbjct: 158 TLYAVSQDE 166


>gi|54019971|ref|YP_115517.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 232]
 gi|53987144|gb|AAV27345.1| DNA polymerase III, beta chain [Mycoplasma hyopneumoniae 232]
          Length = 378

 Score = 51.2 bits (121), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 71/334 (21%), Positives = 144/334 (43%), Gaps = 23/334 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAI 57
           MK T+E+  I   +      I      P+S   L     GL  I  +     ++ I    
Sbjct: 1   MKFTIEKKIIEWQIERMQSAILNNVNSPLSSFFLKLTRSGLFIISTNSELSYKVFINKKD 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   GS  +    L D++RK     Q+SF   + +G+E+ +   D+ F   +   S 
Sbjct: 61  LIEIYDVGSCLIDGVFLRDVIRK--SDKQLSF---HLIGSELKVFWEDAIFSKTTRDSSF 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP    E+      + +   K  ++ T FA      +  L+ I  ++  E   L   ATD
Sbjct: 116 FPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAI--NLRSEAGFLHFSATD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             R A  +++I  +     +I V  K + +   I    D  +++++  S+I    ++L++
Sbjct: 174 TTRFASEKIEISNK--SRINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTI 229

Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             R+   E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LS+S + L
Sbjct: 230 QSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSMSKNAL 289

Query: 296 CMTVDNPDMGKA-IESMNVYYNECPMDICFNYKY 328
              +   D G++ +++ NV      +D  FN ++
Sbjct: 290 KGYISQYDSGQSNVQTKNV------LDFRFNPRF 317


>gi|111220716|ref|YP_711510.1| DNA polymerase III subunit beta [Frankia alni ACN14a]
 gi|111148248|emb|CAJ59918.1| DNA polymerase III, beta chain [Frankia alni ACN14a]
          Length = 408

 Score = 50.8 bits (120), Expect = 3e-04,   Method: Compositional matrix adjust.
 Identities = 79/336 (23%), Positives = 130/336 (38%), Gaps = 30/336 (8%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY-----LQSFPE-SEF 118
           G + V   LL DIV  L      +  +    G  + +  G   F      L  +PE   F
Sbjct: 82  GRVLVPGRLLADIVHSLP----ATTVEVAVDGDRLVLRCGSVRFTVPLMDLADYPELPRF 137

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+   E     F  A       V +   A   +E    L  +   I+   L L A  TD 
Sbjct: 138 PAPIGEVNTLGFAAA-------VGQVAPAAGRDETVPVLTAVRLEISGHGLILAA--TDR 188

Query: 179 HRLAVAEVDIVAQIAKMPSII-VPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLS 236
           +RLAV  +     +    ++  VP K + E+ R  +S    V  + L++        + +
Sbjct: 189 YRLAVRAIPWQPTVDDPWALAHVPAKVLAEVARTPTSASRIVIGLDLADPAGARLGLAAA 248

Query: 237 MS---VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
                VRLIDG FPNY+ ++P           T    A  R   + + R   ++ + + D
Sbjct: 249 GRQTIVRLIDGTFPNYRKLLP-ETAAYTVTAQTAALAAAVRRVAVVATRTAPLRFTFTRD 307

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF-RLDS 352
           ++     +    +A E++ V Y+   + + FN  YLL+ +  +  DE     V     ++
Sbjct: 308 QVVAEAGDGSGAQASETIPVEYSGPELSVLFNPSYLLDGLGAVEDDEATIGFVAADPAEA 367

Query: 353 SNSSVFIRGKDKDSKNNKDNKV---NAF-YVLMPMR 384
           +     + GKD               AF Y+LMP+R
Sbjct: 368 TARPAVLTGKDSGGVRGPGGGPVDEGAFRYLLMPIR 403


>gi|147668838|ref|YP_001213656.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp.
           BAV1]
 gi|146269786|gb|ABQ16778.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp.
           BAV1]
          Length = 419

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 78/162 (48%), Gaps = 15/162 (9%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208
           A E+ R  L  + F +   D KL  V+ DG+RLA+ ++D      +   +++ R  +  +
Sbjct: 133 AKEDNRPVLQSVLFKV--ADGKLTMVSADGYRLAMVKLDFDGDEGQ---VLINRDELRGV 187

Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-------DGEFPNYQNVIPCSNDKEL 261
           +  L  +   V+V   +S   L+  SL +   LI       DG FP Y+ +IP + +  +
Sbjct: 188 ISALR-RAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLIPANFNTFV 246

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
             +     +AV  + ++S  +   + L++ + KL M+  +PD
Sbjct: 247 SFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKLTMS--SPD 286


>gi|255028896|ref|ZP_05300847.1| DNA polymerase III subunit beta [Listeria monocytogenes LO28]
          Length = 146

 Score = 50.4 bits (119), Expect = 4e-04,   Method: Compositional matrix adjust.
 Identities = 39/148 (26%), Positives = 66/148 (44%), Gaps = 13/148 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                   V+  G I + +    DIVR+L ++  +I    E     + NIS G ++F L 
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEI----EVTSNYQTNISSGQASFTLN 116

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKN 139
                E+P   E     + ++  +VLKN
Sbjct: 117 GLDPMEYPKLPEVTDGKTIKIPINVLKN 144


>gi|239927656|ref|ZP_04684609.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
 gi|291435994|ref|ZP_06575384.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
 gi|291338889|gb|EFE65845.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
          Length = 375

 Score = 50.1 bits (118), Expect = 6e-04,   Method: Compositional matrix adjust.
 Identities = 53/257 (20%), Positives = 105/257 (40%), Gaps = 17/257 (6%)

Query: 50  EIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109
           E      + A V   G + VS  LL D+   +  G  +    +++   E+ ++   + F 
Sbjct: 50  ETSTRATLAADVLETGHVLVSGRLLADVTAAMPTG-PVDVVADDQ---ELTLAAPGTTFT 105

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF-----AMATEEIRYYLNGI-FFH 163
           L +    ++P     E   + E A +V  +L+          +M  +E    L G    H
Sbjct: 106 LPTMDRRDYP-----ELPQAPEAAGTVDGDLLAAAVVHAAQASMPDKEAAGSLEGFRGVH 160

Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           I  +   L   A+D +R+    +           ++VP   +    + L+     V  + 
Sbjct: 161 IAADGDHLTVSASDRYRIVRHRIPWTPDGETADDLLVPAAHLAATCKQLAGGPVRVSFTN 220

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSSV 281
           + +   L  ++L+++ R +   FPN  N    P +    LR +   L +AV R ++++  
Sbjct: 221 NITVAALANDTLTVTSRTVATPFPNIDNFFPNPAAASGWLRADAAELLEAVKRAALVNHK 280

Query: 282 RIQAVKLSLSSDKLCMT 298
             QA++LS   D++ +T
Sbjct: 281 EEQAIRLSFDQDQVTVT 297


>gi|260062690|ref|YP_003195770.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501]
 gi|88784257|gb|EAR15427.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501]
          Length = 362

 Score = 49.7 bits (117), Expect = 7e-04,   Method: Compositional matrix adjust.
 Identities = 80/353 (22%), Positives = 145/353 (41%), Gaps = 28/353 (7%)

Query: 25  NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAH-LLYDIVRKLQD 83
           NT+PV  HV ++   G + + AS  E   +    A     GSIT   H  L  I++ L D
Sbjct: 24  NTLPVLSHVKVETQKGHVFMTASNLETTASVLFEAKCK-PGSITCIPHNTLSSILKNLPD 82

Query: 84  GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL-ASSVLKNLVE 142
                  + + +     I  GD+++ L   P  +FP   E  +    EL A+  L+ L  
Sbjct: 83  APVSITIESDGVIQNAEIVCGDADYKLPGLPPDDFPRIAEHPWEEKIELEAAHFLQTLKT 142

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
            T F   T+E+  + N I   ++ E   L  +A   H L   +   + +  K   ++V  
Sbjct: 143 ATRFTDQTDELSGFQNII---LDAESGYLEVMAMTRHLLFKRQ---ITKAKKKFMMMVTT 196

Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLSMSVRLIDGEFPNYQNVIPCSNDK- 259
           KA      + S   +S K+ LSE++  L I  +++++ VR  + + P YQ +   S D+ 
Sbjct: 197 KAAT---YLASGAFTSEKIKLSEAKNMLLITGDNIAVHVRQPEWKPPQYQLLF--SKDRV 251

Query: 260 --ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNE 317
                 N   L+  + R+      R       +  D+  + ++  D   A     +   E
Sbjct: 252 QHGWEANTEELKTKLSRLLSACQSRFAIADFDMKKDRTTLKIE--DEAYATRGQEIVPAE 309

Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370
                    +Y +  +  ++   V ++ V     ++N++ FI     D++N K
Sbjct: 310 L-TGSAVKVRYQIATL-QLALSVVEEERVKLEFQAANTATFI-----DTENTK 355


>gi|294782354|ref|ZP_06747680.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294480995|gb|EFG28770.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 364

 Score = 49.7 bits (117), Expect = 8e-04,   Method: Compositional matrix adjust.
 Identities = 67/351 (19%), Positives = 157/351 (44%), Gaps = 24/351 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + +++ ++     I++     P    + ++  +  +  K +  E+E+      +
Sbjct: 1   MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++V G + +   LL + + KL +   I+F K++       +   ++ F +    E+ +P 
Sbjct: 61  IEVEGQVLIKPSLLLEYI-KLVESENINFEKKDGY-----LIVNNAEFSI--LDETTYPE 112

Query: 121 TKEEEYVYSFELA---SSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            KE   V S  +A   S    NL+E+  F   ++  +    N I     +  ++L +  T
Sbjct: 113 IKE---VVSTTIAKENSQKFSNLLEKVKFLTNSSSNLDALFNSIKITFKDNFVELAS--T 167

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RL   +  +   ++K   I+VP  ++  I +IL   +  V ++ SE ++ +  +   
Sbjct: 168 DSYRLIYLKKPLENVVSK--DILVPADSMAVIYKILKDLNEDVTLATSEDKLIVTWKDAY 225

Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRV---SIMSSVRIQAVKLSLSS 292
            S +L+   FP++  +I   N DK+   N   L  ++ +V   +  S+        +   
Sbjct: 226 FSCKLLSLSFPDFIPLITNPNHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKG 285

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           ++L ++  + +  K  + +N+      + +  N KY+ E +DN   + +++
Sbjct: 286 NQLLISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDNTDKNIIIE 335


>gi|289432029|ref|YP_003461902.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT]
 gi|289432171|ref|YP_003462044.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT]
 gi|288945749|gb|ADC73446.1| DNA polymerase III beta chain [Dehalococcoides sp. GT]
 gi|288945891|gb|ADC73588.1| DNA polymerase III beta chain [Dehalococcoides sp. GT]
          Length = 419

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 42/166 (25%), Positives = 79/166 (47%), Gaps = 14/166 (8%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208
           A E+ R  L  + F +   D KL  V+ DG+RLA+ ++D      +   +++ R  +  +
Sbjct: 133 AKEDNRPVLQCVLFKV--ADGKLTMVSADGYRLAMVKLDFDGDEGQ---VLINRDELRGV 187

Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-------DGEFPNYQNVIPCSNDKEL 261
           +  L  +   V+V   +S   L+  SL +   LI       DG FP Y+ +IP   +  +
Sbjct: 188 ISALR-RAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLIPADFNTFV 246

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
             +     +AV  + ++S  +   + L++ + KL M+  + D G+A
Sbjct: 247 SFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKLTMSSPD-DKGQA 291


>gi|296506465|ref|YP_003667699.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
 gi|296327052|gb|ADH09979.1| DNA polymerase III, beta subunit [Bacillus thuringiensis BMB171]
          Length = 394

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 61/293 (20%), Positives = 126/293 (43%), Gaps = 29/293 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 61  VDVC----GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            DV     G++ V   ++ D+ +KL          +N L     +  G S F L  F  S
Sbjct: 61  EDVSVIAEGTVLVEKKIV-DVAKKLTKEPIKLKLSKNIL----QLISGKSKFTLNIFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +     K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEFKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPN---------YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
              + ++G++P+         Y+NVI         VN   + +A++++ + +S
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVI--------LVNKREILEALEQIMLFTS 277


>gi|213021808|ref|ZP_03336255.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 97

 Score = 49.3 bits (116), Expect = 0.001,   Method: Composition-based stats.
 Identities = 30/89 (33%), Positives = 48/89 (53%), Gaps = 1/89 (1%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1  MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQIS 88
               G+ TV A   +DI R L +GA+I+
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIA 89


>gi|168178719|ref|ZP_02613383.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916]
 gi|182671283|gb|EDT83257.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916]
          Length = 329

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 43/190 (22%), Positives = 87/190 (45%), Gaps = 16/190 (8%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
           +AMA +EIR  LNG+  + +E       +A DG+RLA+ +            +IVP   +
Sbjct: 124 YAMAKDEIRLILNGLCINNSE------FIALDGYRLALRK----GNFQTKEPVIVPADLI 173

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
             I ++   +D  VK+  +++ +      L +      G++ NY+++IP   + ++ +  
Sbjct: 174 KVIKKVKYERD--VKIYYNDNYVKFKFGDLEVIGNRQIGDYINYKSIIPEDYNTKVTLET 231

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
              +  +D +      +     L    +KL +  +N ++    ES+ +     P++I FN
Sbjct: 232 ---KSILDILKDYKKNKFNIADLDFQKNKLIIKANN-EVATVEESITIELQGEPLEISFN 287

Query: 326 YKYLLEIIDN 335
             YL++   N
Sbjct: 288 ADYLIDAFKN 297


>gi|325123494|gb|ADY83017.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 138

 Score = 49.3 bits (116), Expect = 0.001,   Method: Compositional matrix adjust.
 Identities = 32/123 (26%), Positives = 58/123 (47%), Gaps = 7/123 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPES 116
              C   G  TV A  L +I + L   A I     E++      +  G+S F L + P  
Sbjct: 61  EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ---RCILKSGNSRFVLGTLPAE 117

Query: 117 EFP 119
           ++P
Sbjct: 118 DYP 120


>gi|300088280|ref|YP_003758802.1| DNA polymerase III subunit beta [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528013|gb|ADJ26481.1| DNA polymerase III beta chain [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 419

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 41/162 (25%), Positives = 77/162 (47%), Gaps = 15/162 (9%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208
           A E+ R  L  + F +   D KL  V+ DG+RLA+ ++D      +   +++ R  +  +
Sbjct: 133 AKEDNRPVLQCVLFKV--ADGKLTMVSADGYRLAMVKLDFDGDEGQ---VLINRDELRGV 187

Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-------DGEFPNYQNVIPCSNDKEL 261
           +  L  +   V+V   +S   L+  SL +   LI       DG FP Y+ +IP   +  +
Sbjct: 188 ISALR-RAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLIPAYFNTFV 246

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
             +     +AV  + ++S  +   + L++ + KL M+  +PD
Sbjct: 247 SFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKLTMS--SPD 286


>gi|255019006|ref|ZP_05291132.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL F2-515]
          Length = 143

 Score = 48.5 bits (114), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 29/107 (27%), Positives = 59/107 (55%), Gaps = 7/107 (6%)

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCM 297
           RL++G +P+   +IP     EL +N     QA+DR S+++   R   +KL +L + ++ +
Sbjct: 5   RLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEV 64

Query: 298 TVDNPDMGKAIESMNVY---YNECPMDICFNYKYLLEIIDNISSDEV 341
           + ++P++G   E  NV+   +    + I FN KY+++ +     D++
Sbjct: 65  SSNSPEVGNVSE--NVFSQSFTGEEIKISFNGKYMMDALRAFEGDDI 109


>gi|158314395|ref|YP_001506903.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
 gi|158109800|gb|ABW11997.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
          Length = 409

 Score = 48.1 bits (113), Expect = 0.002,   Method: Compositional matrix adjust.
 Identities = 67/359 (18%), Positives = 140/359 (38%), Gaps = 31/359 (8%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           D+L  L     +++RK+  P +  ++    DG L +  + P+  ++  +P      G   
Sbjct: 21  DLLAALATVGAVLDRKSRPPWNATLITADPDGELTLTGASPDATVSVRLPGVARSAGRFL 80

Query: 69  VSAHLLYDIVRKL------QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
           V    L  + + L      +D  ++    +        I+ GD    L   P  E P   
Sbjct: 81  VDGWALTQMCKALVRGEHRRDTDELPVQLDGSFPPAPTITIGDYTVPLTGLPPEEHPGAC 140

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +     +  L  + L+  V+R   A+  ++    L G+  H++         ATD +RLA
Sbjct: 141 QPAPTIA-TLDRAALRAAVDRVLPAVGRDDTLRVLTGM--HMSFTPGLATVAATDRYRLA 197

Query: 183 VAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSES-----RIHLNIES 234
              VD++      P+   +++P K +       +    ++    + S     R+      
Sbjct: 198 ---VDVLPATVTRPAGQELLLPAKILAACAETWTGSSVTIGHRRAASVHDVDRVTFTCGQ 254

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRV-NCTNLRQAVDRV-SIM-----SSVRIQAVK 287
            ++S+    G +P ++ ++   + +   V +   +   V RV +I+     +S  I  + 
Sbjct: 255 TTVSLVETGGSYPPWRKLLGSLDPQHTAVFDRATVAAHVARVLAILTAHPSTSRPIMTMT 314

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNEC----PMDICFNYKYLLEIIDNISSDEVV 342
           L+L+ D L +    P+ G  + +  +          +   FN  YL + +  +S D V+
Sbjct: 315 LTLTPDGLRVAPLLPEHGARVSAPTLPATTSITGGTVRWAFNAAYLRDALAALSGDTVL 373


>gi|237740569|ref|ZP_04571050.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
 gi|229422586|gb|EEO37633.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
          Length = 364

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 75/397 (18%), Positives = 176/397 (44%), Gaps = 47/397 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + +++ ++     I++     P    + ++  +  +  K +  E+E+      +
Sbjct: 1   MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL---QSFPE-S 116
           ++V G + +   LL + + KL +   I+F K++       +   ++ F +    ++PE  
Sbjct: 61  IEVEGQVLIKPSLLLEYI-KLVESEDINFEKKDGY-----LIVNNAEFSILDDTTYPEIK 114

Query: 117 EFPST---KEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLC 172
           E PST   KE    ++          L+E+  F   ++  +    N I     +  ++L 
Sbjct: 115 ELPSTTIAKENSLQFAM---------LLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIELA 165

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           +  TD +RL   +  +   I K   I+VP  ++  I +IL   +  V ++  E ++ +  
Sbjct: 166 S--TDSYRLIYLKKSLENMINK--DILVPADSMSVIYKILKDLNEDVTLATIEDKLIVTW 221

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRV---SIMSSVRIQAVKL 288
           +    S +L+   FP+++ +I  S +DK+   N   L  ++ +V   +  S+        
Sbjct: 222 KDAYFSCKLLSLSFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATF 281

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   ++L ++  + +  K  + +N+      + +  N KY+ E IDN   + ++      
Sbjct: 282 NFKVNQLLISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFIDNTDKNIII------ 334

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +++NSS  ++  ++ ++       N  Y++MP+ I
Sbjct: 335 --EATNSSSMLKIIEEANE-------NYIYLVMPVNI 362


>gi|240047137|ref|YP_002960525.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae HRC/581]
 gi|239984709|emb|CAT04681.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae]
          Length = 366

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 67/320 (20%), Positives = 143/320 (44%), Gaps = 33/320 (10%)

Query: 28  PVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDV--CGSITVSAHLLYDIVRKLQDG 84
           P+S + L    +GL  I  +G E+     I +  +D+   G   +    L +I++K ++ 
Sbjct: 28  PLSGYYLKATREGLSIISTNG-ELSFKSFINSDKIDIIEVGICLIDGFFLKNIIKKSEN- 85

Query: 85  AQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERT 144
               F       TE  IS  +++F       + FP    +      ++ +  LK  ++ T
Sbjct: 86  ----FINFEIKSTEALISWENASFSKVLKDHTIFPEVNFDPIGIKVKVNAKELKKAIKNT 141

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI------ 198
           HFA ++      L+ I  +I  +D  L   ATD +R A  ++ I   +    SI      
Sbjct: 142 HFAASSNVNSPILSSI--NIKSQDNILIFSATDTNRFASDKISISEPVDIDVSINSENLK 199

Query: 199 -IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
             +P +  GEI           ++ +SE++++   ++L++  ++++  + +  NVIP   
Sbjct: 200 NFIPSEVEGEI-----------ELFVSENKVNFTYDNLTIQTKVLNVPYKDISNVIPKPE 248

Query: 258 D--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA-IESMNVY 314
                L++    +   +D+ ++++  +  A+   LS  ++  ++   + G++ ++S  V 
Sbjct: 249 SLIYRLKIEKKEILSLIDKATVIAPGKDSAITFHLSKKEITASISKQETGQSKVKSDKVI 308

Query: 315 -YNECPMDICFNYKYLLEII 333
            Y+   + I  N+KYL + I
Sbjct: 309 KYSGEDVLINVNFKYLKDAI 328


>gi|254259653|ref|ZP_04950707.1| gp15 [Burkholderia pseudomallei 1710a]
 gi|254218342|gb|EET07726.1| gp15 [Burkholderia pseudomallei 1710a]
          Length = 196

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 37/124 (29%), Positives = 58/124 (46%), Gaps = 27/124 (21%)

Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILR 210
           +IRYYLNGI    +E++ ++  +ATDGHR AV  V      +      I+PR  V     
Sbjct: 21  DIRYYLNGICIEAHEKETRV--IATDGHRAAVVRVSAENVDVTPRTRFIIPRATV----- 73

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMS-------------VRLIDGEFPNYQNVIPCSN 257
                  S+KVS +  +  + IE  + S              + ++G FP+Y+ VIP + 
Sbjct: 74  ------ESMKVSKAALKHPIAIEGPNDSGEYRATGGFGVAIFQAVEGVFPDYRRVIPETT 127

Query: 258 DKEL 261
             +L
Sbjct: 128 SGKL 131


>gi|323486044|ref|ZP_08091375.1| DNA polymerase III [Clostridium symbiosum WAL-14163]
 gi|323400611|gb|EGA92978.1| DNA polymerase III [Clostridium symbiosum WAL-14163]
          Length = 349

 Score = 47.4 bits (111), Expect = 0.004,   Method: Compositional matrix adjust.
 Identities = 62/312 (19%), Positives = 135/312 (43%), Gaps = 46/312 (14%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           + ++++++   L     ++ +K T+P+   +L++  +G L   A+  E+ I   +  + D
Sbjct: 1   MKIQKTELAAKLNQIKGVVPKKTTMPILQGILVK--EGYL--IANNLEMTIKAKLEGTED 56

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS---------NFYLQSF 113
            C  I   A   +D++  L DG             ++ IS G++         N Y Q+ 
Sbjct: 57  ECFIIPERA---FDLINNLPDGE-----------IDITISGGNTMTIKADKIKNKY-QTM 101

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP +  E     F + + +L   V R  +A+  +     ++ +      +D +L  
Sbjct: 102 DPGPFPVSDIEGEGSEFTIKAGLLLESVRRVSYAIPQQGGNATMSTMCLQ--AKDGQLNF 159

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V  DGH LA  ++D   +      +++P+  + ++  +  + D  +++  S +      +
Sbjct: 160 VGLDGHVLAWDKIDYDGEF----ELLIPKNTIDKLKTLGLTGD--IRIRRSNAMAVFATK 213

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT----NLRQAVDRVSIMSSVRIQAVKLS 289
              +  RL+ GE+  YQN+      KEL ++       L  A+ R  + ++ +   VK  
Sbjct: 214 DFEICTRLVQGEYYKYQNMF-----KELPLHTVISRKELLDAMVRAKMCTAEKC-PVKFE 267

Query: 290 LSSDKLCMTVDN 301
           LS  +L +++ +
Sbjct: 268 LSGSQLNLSIKD 279


>gi|302520517|ref|ZP_07272859.1| DNA polymerase III beta subunit domain-containing protein
           [Streptomyces sp. SPB78]
 gi|302429412|gb|EFL01228.1| DNA polymerase III beta subunit domain-containing protein
           [Streptomyces sp. SPB78]
          Length = 165

 Score = 47.0 bits (110), Expect = 0.005,   Method: Compositional matrix adjust.
 Identities = 37/164 (22%), Positives = 72/164 (43%), Gaps = 13/164 (7%)

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            E  I         + RL++G+ P Y+ + P   +    +      +AV RV++++  R 
Sbjct: 11  GEGLIGFEGAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVAE-RN 69

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
             V+LS     L +   + D  +A+E ++       + I FN  +LL   D +S+   +D
Sbjct: 70  TPVRLSFEQGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLL---DGLSA---ID 123

Query: 344 DEVV-FRLDSSNSSVFIRGKDK-DSKNNKDNKVNAFYVLMPMRI 385
             V      +S     + G+   D++ +   K    Y++MP+R+
Sbjct: 124 SPVAQLSFTTSTKPALLSGRPAVDAEADDAYK----YLIMPVRL 163


>gi|126207974|ref|YP_001053199.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae L20]
 gi|126096766|gb|ABN73594.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 136

 Score = 47.0 bits (110), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 30/114 (26%), Positives = 58/114 (50%), Gaps = 10/114 (8%)

Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211
           ++R  LNG++F++       C  AT+GH     + ++ A   K    I+P + + +IL I
Sbjct: 26  DVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPKRKGFIMPNELIKQILLI 81

Query: 212 LS----SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC--SNDK 259
                  K  +++V+ ++  I   +  +++  + I+G+FPN   V P   SN+K
Sbjct: 82  KPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLCAVYPLKESNNK 135


>gi|149199127|ref|ZP_01876166.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155]
 gi|149137724|gb|EDM26138.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155]
          Length = 465

 Score = 46.6 bits (109), Expect = 0.006,   Method: Compositional matrix adjust.
 Identities = 75/307 (24%), Positives = 133/307 (43%), Gaps = 33/307 (10%)

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ----SFPE--SEFPSTK 122
           +S   L  IV  ++ G  +    E E   +V  S+G S  YL     ++PE  SE  ST+
Sbjct: 67  ISPETLKRIVAGMKRGDSVVLRYEEE-KLQVKFSNGMSLSYLTIDSVNYPETLSELKSTE 125

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
             +       AS ++ N   R +   +T+  +  LN IFF  + E  KL  VATDG RL 
Sbjct: 126 GLD-------ASDLIVNY-RRAYNTASTDPAKDVLNSIFF--DSEAHKL--VATDGRRL- 172

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
              ++I  ++      ++P   V ++ +I   ++S +KV      I +   S     + +
Sbjct: 173 ---LNIKTELQVKQDTLIPLTKVLKVSKIFE-EESLIKVD--HKTIQIANSSWLYQCQQV 226

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           +G +PN++ V+P S +  + ++   L    D +  + S + +   L    +KL   V++ 
Sbjct: 227 EGGYPNWRTVVPESYESTIDLSGCELAFFCDTIRQLQSDKGEH-SLHWHDNKLIFAVNDE 285

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD---EVVDDEVVFRLDSSNSSVFI 359
              +A   +    N+ P     +  +LL+ +     D    + D      + SSN+   I
Sbjct: 286 SGQRAASIVGAQSNDSPKSFAVDPNFLLDALIAAHGDVQIHLTDASSPICISSSNTQSVI 345

Query: 360 ---RGKD 363
              RG D
Sbjct: 346 MPKRGSD 352


>gi|238060457|ref|ZP_04605166.1| MerR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882268|gb|EEP71096.1| MerR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 362

 Score = 46.2 bits (108), Expect = 0.009,   Method: Compositional matrix adjust.
 Identities = 65/283 (22%), Positives = 116/283 (40%), Gaps = 53/283 (18%)

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +E   V    L+ + L   ++   FA+  +     L+G+ F +  + ++L  VATD HR+
Sbjct: 114 EENPMVTCLVLSRADLAAAIDAVRFAVGADPDLPVLSGVLFDVAADGVRL--VATDRHRM 171

Query: 182 AV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           AV      VD  AQ    P  +V R       R L   D       SE+R+ L+  ++++
Sbjct: 172 AVSRVPGRVDGPAQRVLAPVDLVDRA------RALLDADGG-----SEARLRLDGAAVTV 220

Query: 238 SV--RLIDG-----EFPNYQNVIPCSNDK----ELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           SV  R   G     EFP+YQ ++           + V+   LR  V        +R + V
Sbjct: 221 SVAGREATGPALPHEFPDYQRLLGGHAGGTPAYRIPVDVPALRAEVADGPPARVLRHEGV 280

Query: 287 KLSLS----SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            + ++     D   + V +           V +         N +YLL+ +D  + D   
Sbjct: 281 DVPVTVLGLDDVGALRVLDSAALADAAPEAVRFG-------VNGRYLLDALD--AGDR-- 329

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +++  LD   + + +R         + +  +AF +LMP+R+
Sbjct: 330 -GQLLLELDGPIAPLAVR---------RPDDADAFSILMPIRL 362


>gi|273810561|ref|YP_003344942.1| gp7 [Sodalis phage SO-1]
 gi|258619846|gb|ACV84099.1| gp7 [Sodalis phage SO-1]
          Length = 172

 Score = 46.2 bits (108), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 36/110 (32%), Positives = 51/110 (46%), Gaps = 27/110 (24%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL----AV---AEVDIVAQIAKMPSIIVP 201
           AT ++RYYLNG+FF  +EE      VATDGHRL    AV    E  IVA   ++P+    
Sbjct: 19  ATNDVRYYLNGVFF--DEEGF---IVATDGHRLFCGSAVVPEGESKIVAIKGRLPTKFEY 73

Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
               G       SKD  +                ++ V ++DG FP+++ 
Sbjct: 74  CNIDGTSAAFFDSKDVLIG---------------TIPVEIVDGRFPDWRR 108


>gi|313887222|ref|ZP_07820917.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299737|ref|YP_004441658.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM
           20707]
 gi|312923313|gb|EFR34127.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176800|gb|AEE12490.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM
           20707]
          Length = 402

 Score = 45.8 bits (107), Expect = 0.010,   Method: Compositional matrix adjust.
 Identities = 73/325 (22%), Positives = 137/325 (42%), Gaps = 39/325 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58
           MK TV  +++  LL +  R++   N ++P   + L +     + +      +  TG I P
Sbjct: 1   MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE----------VNISHGDSNF 108
              D      ++   L D ++ L         +  E G            ++I  GD++ 
Sbjct: 61  LECDGEMRFLIAPTPLLDYIKSLPVQPLTMEMQTTEEGARFIHLIHSTGYLDIPIGDADL 120

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           Y+      E P   E   + S  + SS L   +     A   +  R  L+G+ F +  + 
Sbjct: 121 YVSR----ESPEDTEGAAMMS--MNSSSLLAGISAVLPAAYPDTSREQLHGVHFVMLTDR 174

Query: 169 LKLCAVATDGHRLA---------VAEVDIVAQIA-KMPSIIVPRKA---VGEILRILSSK 215
           L+LCA  TD  +L          V + D VAQ + + PS  +P K    +  IL   +++
Sbjct: 175 LELCA--TDNVQLVRYIDYDARIVEKEDEVAQASLRDPSFTLPIKVSSFLQSILPNFANE 232

Query: 216 DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
           ++ V  +  +  +     ++   V ++D  FPNY  ++P +    + ++   L++A  RV
Sbjct: 233 EALVVFNNKQVEVRFGTYNVVSQVSVLD--FPNYNGLLPDAMTYMIEIDGQVLQRATTRV 290

Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVD 300
           + +S++    V L   S  LC+T +
Sbjct: 291 NYLSNI----VGLGADSSLLCITFE 311


>gi|111019151|ref|YP_702123.1| DNA polymerase III, beta chain [Rhodococcus jostii RHA1]
 gi|110818681|gb|ABG93965.1| probable DNA polymerase III, beta chain [Rhodococcus jostii RHA1]
          Length = 317

 Score = 45.8 bits (107), Expect = 0.012,   Method: Compositional matrix adjust.
 Identities = 50/232 (21%), Positives = 98/232 (42%), Gaps = 38/232 (16%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           L G     + + L+L  V TD +RLAV    ++  + +  S +VP   + +   +L   D
Sbjct: 115 LRGCLLETDHDVLRL--VTTDRYRLAVGTATLLEPLDEPISAVVPCTFLDDAAGLLRRHD 172

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR----QAV 272
           + V V +    I L      +  RL+DG FP+++++ P     E   +  +LR     A 
Sbjct: 173 T-VTVVVGADSITLRCGGEQLGTRLVDGAFPDHRSLSPLDRGIEYTFSSADLRALLADAG 231

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           DRV +            L S ++        +G+      V +      +  N  +LLE 
Sbjct: 232 DRVDLG----------VLESGEIV-------VGRQGTEQPVLFQ-----VQVNAGFLLEA 269

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +D +       +++ F++    + + IR +      +  +  +A+ +LMP++
Sbjct: 270 VDALPG-----EQLTFQVGEPITPLAIRPR----SIHTSDPASAYSLLMPLQ 312


>gi|20799549|gb|AAM28542.1|AF494512_1 DNA polymerase III beta subunit [Tomato big bud phytoplasma]
          Length = 273

 Score = 45.1 bits (105), Expect = 0.018,   Method: Compositional matrix adjust.
 Identities = 41/170 (24%), Positives = 87/170 (51%), Gaps = 8/170 (4%)

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
           LQ FP   F    ++     F + + +LK +++  + A + ++ +  L G+ F I E  L
Sbjct: 77  LQLFPPVSFDFQSDK----FFAIKNEILKKIIKEVNVAASRDKQQKTLMGVNF-IYENSL 131

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRI 228
            L  +ATD  R+A  E+ +        +I V  K + E+ ++L   KD  V +S+++ ++
Sbjct: 132 -LRVLATDTFRIAQKEISLDXNYFDF-NITVSYKNLEELYKLLEYQKDELVHISINQQKM 189

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
            L  ++L     L++G++P +  +   S    +++N  +  + ++RVS++
Sbjct: 190 ILRCDNLLFQTTLLEGKYPAWPIIKVSSFPFFVKMNRLDCLKTLERVSLV 239


>gi|330937295|gb|EGH41306.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 84

 Score = 45.1 bits (105), Expect = 0.019,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           + L+S +L +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V 
Sbjct: 1   MQLASGQLKIQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVR 55

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             L  SNSS  ++  D D         ++ YV+MPMR+
Sbjct: 56  LILSDSNSSALVQESDND---------DSAYVVMPMRL 84


>gi|58699454|ref|ZP_00374195.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534026|gb|EAL58284.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 77

 Score = 45.1 bits (105), Expect = 0.021,   Method: Compositional matrix adjust.
 Identities = 27/78 (34%), Positives = 40/78 (51%), Gaps = 15/78 (19%)

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           A ES+ V YNE P++I FN +YLL+++        + ++  F L   NS+  I  +D  S
Sbjct: 14  ATESIEVDYNEAPIEIGFNSRYLLDVL------SCIKNKCKFSLADGNSATIITDEDDSS 67

Query: 367 KNNKDNKVNAFYVLMPMR 384
                      YV+MPMR
Sbjct: 68  ---------VLYVVMPMR 76


>gi|270307680|ref|YP_003329738.1| DNA polymerase III domain protein [Dehalococcoides sp. VS]
 gi|270153572|gb|ACZ61410.1| DNA polymerase III domain protein [Dehalococcoides sp. VS]
          Length = 413

 Score = 44.3 bits (103), Expect = 0.030,   Method: Compositional matrix adjust.
 Identities = 37/160 (23%), Positives = 76/160 (47%), Gaps = 15/160 (9%)

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210
           E+ +  L  + F +  +D KL  V+ DG RL++ ++D      +   +++ R  +  ++ 
Sbjct: 135 EDSKPILQCVLFRV--KDGKLTMVSADGFRLSLVKLDFDGDEGE---VLISRDDLWGVVS 189

Query: 211 ILSSKDSSVKVSLSES-------RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            L  +   V+VS  +S        + L+ E++    R  DG FP Y+ +IP      +  
Sbjct: 190 ALR-RAYRVRVSFEKSGESLDGMSLVLDTEAIRYKWRGADGNFPEYEKLIPADFTTFVSF 248

Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           +     +AV  + ++S  +   + L++ + KL M+  +PD
Sbjct: 249 DTNEAIKAVSSLKVLSDSKNYPIDLTIGNGKLTMS--SPD 286


>gi|121610651|ref|YP_998458.1| DNA polymerase sliding clamp subunit-like protein
           [Verminephrobacter eiseniae EF01-2]
 gi|121555291|gb|ABM59440.1| DNA polymerase sliding clamp subunit-like protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 366

 Score = 44.3 bits (103), Expect = 0.031,   Method: Compositional matrix adjust.
 Identities = 49/205 (23%), Positives = 86/205 (41%), Gaps = 26/205 (12%)

Query: 54  TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH-GDSNFYLQS 112
            GAI  SV  C   T+ A         ++ GAQ+ F      G  + +     +N  +  
Sbjct: 66  AGAILGSVLDCTECTIEA---------IEQGAQLVFG-----GARIKLMRPAGANDGIDL 111

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F   + P+  ++  V  FE +      L+       A  ++RYYL G+    +   L+L 
Sbjct: 112 F---DAPADGDKRVV--FETSGRDFAGLMAGPVQYAAKSDVRYYLVGVHATCDAGALRL- 165

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES---RIH 229
              ++G  L  A   I A  A M   IVP  A   I  +  + +      L +    R+ 
Sbjct: 166 -TGSNGFMLCTAAGAIDAS-ASMVDCIVPHTAADSIGAVFGADERITVCQLGKDANLRLL 223

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIP 254
           ++ E++  +  L+ G+FP+++ V+P
Sbjct: 224 MHSETIQWNTALVAGKFPDFRRVMP 248


>gi|34762965|ref|ZP_00143943.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887353|gb|EAA24445.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 319

 Score = 44.3 bits (103), Expect = 0.035,   Method: Compositional matrix adjust.
 Identities = 54/253 (21%), Positives = 116/253 (45%), Gaps = 30/253 (11%)

Query: 145 HFAMATEEIRYYLNG------IFFHINE--EDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
            F M+ E++++  N       +F  I    +D  L  V+TD  RL   + ++   I K  
Sbjct: 83  KFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNILELVSTDSFRLIYMKKELNNTINK-- 140

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
            I+VP  ++  I +IL   D    ++ S+ ++ +  +    + +L+   FP+++ +I  +
Sbjct: 141 DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVTWKDAYFTCKLLSLNFPDFRPLINNT 200

Query: 257 N-DKELRVNCTNLRQAVDRV---SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312
           N DK    N   L  A+ +V   +  S+        +   ++L ++  + +  K  + +N
Sbjct: 201 NHDKRFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQLVISGVSSN-AKINQKVN 259

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372
           +      + +  N KY+ E IDN+  + ++        +++NSS  +R  ++ ++     
Sbjct: 260 MIKTGEDLKLGMNCKYIKEFIDNVDKNIII--------EATNSSSMLRFMEERNE----- 306

Query: 373 KVNAFYVLMPMRI 385
             N  Y++MP+ I
Sbjct: 307 --NYIYLIMPVNI 317


>gi|134034789|gb|ABO45716.1| DNA polymerase III beta subunit [Microcystis sp. N-C 118/2]
          Length = 111

 Score = 44.3 bits (103), Expect = 0.036,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 275 VSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           V+++S  +   VK SL S  D+L + V++PD+G A ESM         DI FN KYL++ 
Sbjct: 11  VAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAATIQGESGDIAFNVKYLMDG 70

Query: 333 IDNISSDEV 341
           +  + ++++
Sbjct: 71  LKALPNNDI 79


>gi|262067571|ref|ZP_06027183.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291378686|gb|EFE86204.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 364

 Score = 43.9 bits (102), Expect = 0.044,   Method: Compositional matrix adjust.
 Identities = 68/395 (17%), Positives = 168/395 (42%), Gaps = 43/395 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + +++ ++     I++     P    + ++  +  +  K +  E+E+      +
Sbjct: 1   MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD-----SNFYLQSFPE 115
           ++V G + +   LL + ++ ++         EN     +N+   D     +N       E
Sbjct: 61  IEVEGQVLIKPSLLLEYIKLIES--------EN-----INLEKKDGYLIVNNAEFSILDE 107

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAV 174
           + +P  KE       +     +  L+E+  F   ++  +    N I     +  ++L + 
Sbjct: 108 TTYPEIKEVPSTTIAKENGIQVAMLLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIELAS- 166

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD +RL   +  +   + K   I+VP  ++  I +IL   +  V ++  E ++ +  + 
Sbjct: 167 -TDSYRLIYFKKQLENMVNK--DILVPGDSISVIYKILKDLNEDVSLATCEDKLIITWKD 223

Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRV---SIMSSVRIQAVKLSL 290
              S +L+   FP+++ +I  S +DK+   N   L  ++ +V   +  S+        + 
Sbjct: 224 AYFSCKLLSLTFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNF 283

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++L +   + +  K  + +N+      + +  N KY+ E +DN   + ++        
Sbjct: 284 KGNQLLINGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDNTDKNIII-------- 334

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +++NSS  ++  ++ ++       N  Y++MP+ I
Sbjct: 335 EATNSSSMLKIVEETNE-------NYIYLVMPVNI 362


>gi|134034795|gb|ABO45720.1| DNA polymerase III beta subunit [Microcystis botrys N-C 161/1]
 gi|134034805|gb|ABO45727.1| DNA polymerase III beta subunit [Microcystis botrys N-C 264]
          Length = 111

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 275 VSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           V+++S  +   VK SL S  D+L + V++PD+G A ESM         DI FN KYL++ 
Sbjct: 11  VAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDG 70

Query: 333 IDNISSDEV 341
           +  + ++++
Sbjct: 71  LKALPNNDI 79


>gi|34764154|ref|ZP_00145022.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886072|gb|EAA23380.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 307

 Score = 43.9 bits (102), Expect = 0.045,   Method: Compositional matrix adjust.
 Identities = 68/304 (22%), Positives = 130/304 (42%), Gaps = 50/304 (16%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R + L  +    + ++     P+   +  +  +   +I  +G  ++ T  I  S
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKEN--KIYFTGTNLDTT--IKTS 56

Query: 61  VDVC-----GSITVSAHLLYDIVRKLQD--------GAQISFFKENELGTEVNISHGDSN 107
           +DV      G I  S  ++ + +++++D           I F +  +  TE ++   +  
Sbjct: 57  IDVNEVIREGEIAFSYSIIDEYLKEIKDEFVVLRVENGNILFIETEDSTTEYDVHSAE-- 114

Query: 108 FYLQSFPESEFPSTKEE----EYVYSFELASSVLKNLVERTHFAMATEE------IRYYL 157
                    ++P+T E     E  + FE+ S  L N+ E+  F+  T +      IR  +
Sbjct: 115 ---------DYPNTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNIAMNCIR--I 163

Query: 158 NGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS 217
             I  H       L  ++T+ +RL   + +I   I    S+ VP   +  I++I+   D+
Sbjct: 164 ESILKH-------LHFISTNTYRLTFLKKNIDKDIPDF-SVSVPADTISSIIKIIKGLDN 215

Query: 218 SV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRV 275
            V KV   E+ ++   +   +  +LI+  FPNY  ++   S DK+L +N   L   + R+
Sbjct: 216 EVIKVYKEEAHLYFQYKDTMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRI 275

Query: 276 SIMS 279
            I S
Sbjct: 276 LIFS 279


>gi|134034783|gb|ABO45712.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 31]
 gi|134034786|gb|ABO45714.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 57]
 gi|134034792|gb|ABO45718.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 143]
 gi|134034798|gb|ABO45722.1| DNA polymerase III beta subunit [Microcystis viridis N-C 169/7]
 gi|134034801|gb|ABO45724.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 228/1]
 gi|134034808|gb|ABO45729.1| DNA polymerase III beta subunit [Microcystis sp. N-C 324/1]
 gi|134034892|gb|ABO45776.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 123/1]
 gi|134034895|gb|ABO45778.1| DNA polymerase III beta subunit [Microcystis cf. flos-aquae N-C
           144]
 gi|134034898|gb|ABO45780.1| DNA polymerase III beta subunit [Microcystis cf. ichthyoblabe N-C
           279]
          Length = 111

 Score = 43.9 bits (102), Expect = 0.046,   Method: Compositional matrix adjust.
 Identities = 24/69 (34%), Positives = 41/69 (59%), Gaps = 2/69 (2%)

Query: 275 VSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           V+++S  +   VK SL S  D+L + V++PD+G A ESM         DI FN KYL++ 
Sbjct: 11  VAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDG 70

Query: 333 IDNISSDEV 341
           +  + ++++
Sbjct: 71  LKALPNNDI 79


>gi|330861744|emb|CBX71918.1| hypothetical protein YEW_AJ01850 [Yersinia enterocolitica W22703]
          Length = 82

 Score = 43.5 bits (101), Expect = 0.050,   Method: Compositional matrix adjust.
 Identities = 31/96 (32%), Positives = 54/96 (56%), Gaps = 14/96 (14%)

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   
Sbjct: 1   MSQNQLKITANNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLL 55

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L  S SSV I  +D  S+        A YV+MPMR+
Sbjct: 56  LTDSVSSVQI--EDGASQ-------AAAYVVMPMRL 82


>gi|89512206|gb|ABD73999.1| DNA polymerase III subunit beta [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 143

 Score = 42.7 bits (99), Expect = 0.085,   Method: Compositional matrix adjust.
 Identities = 31/120 (25%), Positives = 53/120 (44%), Gaps = 4/120 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A 
Sbjct: 6   LKFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ VS  LL DIVR L +   I F+ +   G  V ++ G + F L +    ++P+
Sbjct: 66  IASPGSVLVSGRLLSDIVRALPN-KPIDFYVD---GNRVALNCGSARFSLPTMAVEDYPT 121


>gi|302869183|ref|YP_003837820.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|302572042|gb|ADL48244.1| DNA polymerase III beta chain [Micromonospora aurantiaca ATCC
           27029]
          Length = 378

 Score = 42.7 bits (99), Expect = 0.095,   Method: Compositional matrix adjust.
 Identities = 65/274 (23%), Positives = 115/274 (41%), Gaps = 49/274 (17%)

Query: 140 LVERTHFAMATEEIRY---------YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
           ++ RT  A A + +R+          L+G+   +  + ++L  VATD HRLAVA V    
Sbjct: 126 VLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRLAVARVG--G 181

Query: 191 QIAKMP-SIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
            +   P S ++P  AV E LR L   D   + +V ++  R+ + +    ++   +  +FP
Sbjct: 182 TVDGPPVSALLPVAAVDE-LRALLDLDGADTAEVVVATDRVTVTVAGRPLTAVPLPYDFP 240

Query: 248 NYQNVIPCS----NDKELRVNCTNLRQAV--DRVSI----MSSVRIQAVKLSLSSDKLCM 297
           +Y+ ++           +  +   LR A+  D V +       V  + V L L       
Sbjct: 241 DYRRLLRAQLGDVPTYRIPFDGAALRAALTADGVPVCHRAHEGVEHEVVALGLDGRGELR 300

Query: 298 TVDNPDMGKAIESMNVYYNEC------PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            VD P+   A   +              + +  N +YLL   D + S    D ++V  LD
Sbjct: 301 LVD-PNGVVAAGGVEGGAGAAGAGGPDALRVAVNREYLL---DALGSG---DGQLVLELD 353

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + + +R         + +  +AF VLMP+R+
Sbjct: 354 GPIAPLAVR---------RADDAHAFSVLMPVRL 378


>gi|294632544|ref|ZP_06711104.1| DNA polymerase subunit III beta [Streptomyces sp. e14]
 gi|292835877|gb|EFF94226.1| DNA polymerase subunit III beta [Streptomyces sp. e14]
          Length = 281

 Score = 42.4 bits (98), Expect = 0.13,   Method: Compositional matrix adjust.
 Identities = 27/135 (20%), Positives = 61/135 (45%), Gaps = 3/135 (2%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
           FA  T+     L G+   I ++ L++  VATD +R+A+A             +I P   +
Sbjct: 63  FAAGTDPELPMLGGVLLDIEDDALRV--VATDRYRMAIARTRTTTHDGPHTQVIAP-LPL 119

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
            + +R L   + + ++++    + L       + R +D +FP+ + ++     +  R++ 
Sbjct: 120 TDAIRALLDGEETAQLAVEGDLLTLGTGDRRTTGRCLDHDFPDCRRLLDLPTGRRARIDT 179

Query: 266 TNLRQAVDRVSIMSS 280
              R A++   + +S
Sbjct: 180 AVFRTALETGPVHAS 194


>gi|134096941|ref|YP_001102602.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006617|ref|ZP_06564590.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909564|emb|CAL99676.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 364

 Score = 42.0 bits (97), Expect = 0.15,   Method: Compositional matrix adjust.
 Identities = 50/223 (22%), Positives = 88/223 (39%), Gaps = 15/223 (6%)

Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222
           H+ +   +L    TD  R+AVA +        +  ++VP   + E+ +  S  +  V + 
Sbjct: 157 HVKQRGERLVLAGTDRFRMAVATLPWRPGTDDL-DVLVPSGLLTEVAKQASGDE--VMLR 213

Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
               R+ L+     +S  L+D  FP+    +    D  + V    +  AV RVS  +   
Sbjct: 214 ADADRVGLSWADAEVSTTLLDAPFPDESRHLLPEVDCAVEVRADEVAGAVRRVSPYAGAH 273

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
             AV L +   ++ +   +P  G A E++            F  +YL + +   +   V 
Sbjct: 274 -GAVVLDVGDAEVRVRAADPQFGDAQEAVKATVTGDRFSPAFQPRYLADALQAFAGRTV- 331

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  R     S+V     D D+      + +  YVLMP RI
Sbjct: 332 --RMGLRSGLRRSTVI---SDVDAP-----EADLRYVLMPKRI 364


>gi|196230263|ref|ZP_03129126.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428]
 gi|196225860|gb|EDY20367.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428]
          Length = 97

 Score = 41.6 bits (96), Expect = 0.20,   Method: Compositional matrix adjust.
 Identities = 31/108 (28%), Positives = 51/108 (47%), Gaps = 16/108 (14%)

Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           +SS +  +VKL  + + + +  + PD+G+A ES+ V Y      I FN ++L   +  ++
Sbjct: 5   LSSEKSNSVKLVFTKNNIEIAANTPDVGEARESLAVAYKGREFSIAFNPEFLQAPLRVLT 64

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +DEV  D +                D+ S      +    YVLMPMRI
Sbjct: 65  NDEVYLDMI----------------DEMSPGVIKIQSPFLYVLMPMRI 96


>gi|321309520|ref|YP_004191849.1| DNA polymerase III subunit beta [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801364|emb|CBY92010.1| DNA polymerase III beta subunit [Mycoplasma haemofelis str.
           Langford 1]
          Length = 376

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 28/109 (25%), Positives = 55/109 (50%), Gaps = 1/109 (0%)

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           L M V++  G FP   +    +N+KE  V+ ++L  A++R  ++S+  IQ     L ++K
Sbjct: 237 LIMKVKIERGNFPELSHWFNTNNNKEFLVSKSDLLSAIERNLLLSNKVIQTTFYRLENEK 296

Query: 295 LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
           L +   + + G   E + +  + +  +D   N   L  +I NI S+ ++
Sbjct: 297 LWIEYKDSEKGFCKEFIKIKKFTDGDIDFSLNNNLLKPLIKNIDSENII 345


>gi|62362365|ref|YP_224230.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC]
 gi|58219987|gb|AAW67499.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC]
          Length = 191

 Score = 41.6 bits (96), Expect = 0.21,   Method: Compositional matrix adjust.
 Identities = 35/124 (28%), Positives = 61/124 (49%), Gaps = 15/124 (12%)

Query: 134 SSVLKNLVERTHFAMAT---EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
           + V+ NLV+    A       ++R+Y NG+  ++N+  ++   VATDG+ +AV    I +
Sbjct: 7   NKVINNLVQAVKAAKVFAAKNDVRFYFNGVALYVNDGVIE-SVVATDGYSMAV----IGS 61

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                 + I+  K +  +   L++ D  VKV+         IE     + L+DG +PN +
Sbjct: 62  TELNGEASIIANKDIDTLCNALATSDQ-VKVNWPV------IEIGDYKIPLVDGRYPNVK 114

Query: 251 NVIP 254
            VIP
Sbjct: 115 RVIP 118


>gi|416236|dbj|BAA03628.1| DNA polymerase III beta subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 165

 Score = 41.2 bits (95), Expect = 0.26,   Method: Compositional matrix adjust.
 Identities = 30/127 (23%), Positives = 63/127 (49%), Gaps = 3/127 (2%)

Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           ++K+ + E  I   I+++     LIDG+FPN Q   P   +  + V   ++ + + R  +
Sbjct: 7   NLKIIIVEGYITFIIDNVIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDL 66

Query: 278 MSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIID 334
           ++   + A V + ++ DK+       ++GK  E  + +  E    + I FN ++L++ I 
Sbjct: 67  VADDGLPAIVNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIK 126

Query: 335 NISSDEV 341
            +S D +
Sbjct: 127 TLSEDRI 133


>gi|213581832|ref|ZP_03363658.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 79

 Score = 41.2 bits (95), Expect = 0.27,   Method: Compositional matrix adjust.
 Identities = 26/93 (27%), Positives = 52/93 (55%), Gaps = 14/93 (15%)

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++++ +  + V       R+  
Sbjct: 1   NQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETV-------RIML 53

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++S   ++ +D  S+       +A YV+MPMR+
Sbjct: 54  TDSVSSVQIEDAASQ-------SAAYVVMPMRL 79


>gi|320580634|gb|EFW94856.1| Ubiquitin-protein ligase (E3) [Pichia angusta DL-1]
          Length = 1559

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 45/157 (28%), Positives = 72/157 (45%), Gaps = 26/157 (16%)

Query: 135  SVLKNLVERTHFAMATEEIRYYLNGIFFHINEE----DLKLCAVATDGHRLAVAEVDIVA 190
            SVL   V R+   + +  I +  N +FF I +E      K  +      RL+  + D+  
Sbjct: 1268 SVLGKFVARS--LLDSRIIDFEFNPLFFEIAKELDTKSWKELSRKKSIERLSRVDADLA- 1324

Query: 191  QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                        K++G + R L   D+  +V  SE R  + IE   +S   ++   P Y+
Sbjct: 1325 ------------KSLGHLTRYL---DAYAEVEESE-RPEILIEGCKLSDLSLNFTLPGYE 1368

Query: 251  NVIPCSNDKELRVNCTNLRQAVDRV---SIMSSVRIQ 284
            +V  C N +E+ V+ TNL + VD+V   +I S VR Q
Sbjct: 1369 DVELCLNGEEVEVDHTNLERYVDKVIDLTIKSGVRSQ 1405


>gi|315504340|ref|YP_004083227.1| DNA polymerase iii beta chain [Micromonospora sp. L5]
 gi|315410959|gb|ADU09076.1| DNA polymerase III beta chain [Micromonospora sp. L5]
          Length = 384

 Score = 41.2 bits (95), Expect = 0.30,   Method: Compositional matrix adjust.
 Identities = 35/126 (27%), Positives = 63/126 (50%), Gaps = 17/126 (13%)

Query: 140 LVERTHFAMATEEIRY---------YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
           ++ RT  A A + +R+          L+G+   +  + ++L  VATD HRLAVA V    
Sbjct: 126 VLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRLAVARVG--G 181

Query: 191 QIAKMP-SIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
            +   P S ++P  AV E LR L   D   S +V ++  R+ + +    ++   +  +FP
Sbjct: 182 TVDGPPVSALLPVVAVDE-LRALLDLDGADSAEVVVATDRVTVTVAGRPLTAVPLPYDFP 240

Query: 248 NYQNVI 253
           +Y+ ++
Sbjct: 241 DYRRLL 246


>gi|307069625|ref|YP_003878102.1| DNA polymerase III subunit beta [Candidatus Zinderia insecticola
           CARI]
 gi|306482885|gb|ADM89756.1| DNA polymerase III, beta subunit [Candidatus Zinderia insecticola
           CARI]
          Length = 366

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 61/232 (26%), Positives = 119/232 (51%), Gaps = 19/232 (8%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           +Y LNG+   IN E  K+  ++TDG RL+   ++I         II+P+K + EI++IL+
Sbjct: 154 KYSLNGLL--INIEKKKISFLSTDGFRLSYYFLNIKNNYK--TKIIIPKKNIFEIIKILN 209

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            +   +K+ + ++ I   I  +    RLI  +F NY+ +I      ++++N   +   + 
Sbjct: 210 YEKKKIKIIILKNYIIFKIFKIKFISRLIKEDFINYKYIINKKYRYKIKINRKKILNIIK 269

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           ++S++   +I+ +K ++  + L ++  N     + E +N+ Y    ++I  N KYLLEI+
Sbjct: 270 KISLIEKDKIKIIKFNIKRNNLKISSFNKIEEISNEKININYKNKNININLNIKYLLEIL 329

Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            NI      +  ++F+ +    S+ I+           NK N  Y++MP+ I
Sbjct: 330 TNIK-----NKHIIFKFNKK-KSILIKI---------YNKKNFKYIIMPIEI 366


>gi|228471322|ref|ZP_04056125.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3]
 gi|228306899|gb|EEK16007.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3]
          Length = 402

 Score = 40.4 bits (93), Expect = 0.47,   Method: Compositional matrix adjust.
 Identities = 71/328 (21%), Positives = 135/328 (41%), Gaps = 45/328 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58
           MK TV  +++  LL +  R++   N ++P   + L +     + +      +  TG I P
Sbjct: 1   MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE----------VNISHGDSNF 108
              D      ++   L D ++ L         +  E G            ++I  GD+  
Sbjct: 61  LECDGDMHFLIAPTPLLDYIKSLPVQPLTLEMQTTEEGARFIHLIHSTGYLDIPIGDAEL 120

Query: 109 YL--QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           Y+  +S  +SE  +             S+VL         A   +  R  L+G+ F +  
Sbjct: 121 YVSRESPEDSEGAAMMSMNSSSLLSGISAVLP--------AAYPDTSREQLHGVHFVMLS 172

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKM-----------PSIIVPRKA---VGEILRIL 212
           + L+LCA  TD  +L V  +D  A+I +            PS  +P K    +  IL   
Sbjct: 173 DRLELCA--TDNVQL-VRYIDYDARIVEKEGEVAQASLRDPSFTLPIKVSSFLQSILPNF 229

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
           +++++ V  +  +  +     ++   V ++D  FPNY  ++P +    + ++   L++A 
Sbjct: 230 ANEEALVIFNNKQVEVRFGTYNVVSQVSVLD--FPNYNGLLPDAMTYMIEIDGQVLQRAT 287

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
            RV+ +S++    V L   S  LC+T +
Sbjct: 288 TRVNYLSNI----VGLGADSSLLCITFE 311


>gi|300790639|ref|YP_003770930.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
 gi|299800153|gb|ADJ50528.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
          Length = 353

 Score = 40.4 bits (93), Expect = 0.51,   Method: Compositional matrix adjust.
 Identities = 71/360 (19%), Positives = 143/360 (39%), Gaps = 33/360 (9%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
           +P    + L+A    L +     ++ +    PA+    GS+ V A  L + + K+ D   
Sbjct: 21  LPARAGLRLEAAAAGLTVAGVASDLAVRFGCPATTHTDGSVVVPAAPLVETL-KVLDTEL 79

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPESEF---PSTKEEEYVYSFELASSVLKNLVER 143
           +    E   G+ + +   ++ F L   PES     P  K  E V     AS++   +V  
Sbjct: 80  VRLVVE---GSRLALRLDNARFALPLLPESGAVSDPPAKVSE-VDGAAFASAL--RIVAG 133

Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203
           T    A ++      G+        L L   A+D +R+AVA + + +  +    ++VP  
Sbjct: 134 TA---AKDDPLPLFTGVRVQAAGAGLTLT--ASDRYRMAVARLPLSSPGSL--DVLVPAA 186

Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            + E  R    +   V + +   R  ++     ++  ++D  F +  ++   + D  + +
Sbjct: 187 LLSEAARQARGR---VGLHVGPGRFGVSWPEGLVATAVLDAGFLSEDSIPSGTVDTTVSL 243

Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDIC 323
               L  AV RV + +  R + + L +   ++ +     D G+A E++    +       
Sbjct: 244 PADALAAAVRRVGVYAEDR-RVLTLEVGDAQVRLASARQDTGEAEETLKADVSGGRTSPS 302

Query: 324 FNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           F  +YLL+ +   +      ++VV  +     +  +R  +         +V   Y LMPM
Sbjct: 303 FQARYLLDALAAFAG-----EQVVLSIQPGMRACILRAAEP-------GEVALAYYLMPM 350


>gi|302530874|ref|ZP_07283216.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4]
 gi|302439769|gb|EFL11585.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4]
          Length = 365

 Score = 40.0 bits (92), Expect = 0.60,   Method: Compositional matrix adjust.
 Identities = 67/349 (19%), Positives = 134/349 (38%), Gaps = 23/349 (6%)

Query: 35  LQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94
           L+AN   L +  +  ++ +  + PA+  + G + V A    + VR L D  Q+    E  
Sbjct: 37  LRANADGLVVSGNDRDLAVQLSCPATTHLDGEVVVPAAPFAETVRML-DVDQVRLVVE-- 93

Query: 95  LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
            GT + I    + F L                +   +     L+  +       A ++  
Sbjct: 94  -GTRLAIRTDSARFALPLLDRDLLHDPSPPPLLSKVD--GLALEAALRTVAGTAAKDDPL 150

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214
               G+   +     +LC  A D +R+AVA + +  ++     ++VP   + E  R    
Sbjct: 151 PVFTGV--RVQSIGGELCLTACDRYRMAVARLPL-REVRDPIDVLVPATLLTEAAR---H 204

Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
              ++ +   +    L+    +++  ++D  F +  ++   + D E+ V+   L  A+ R
Sbjct: 205 GSGAMGLHADDRHFALSWPGGTVTTAVLDAGFLSADSIPSNAIDTEVEVSADELAAAIRR 264

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
           V + S  R + + L +    L +     D G+A E +            F+ +YLL+ + 
Sbjct: 265 VGVYSEDR-RVLTLEVGDAHLRLASARQDTGEAEEHLKANVCGGRTSPSFHARYLLDALA 323

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             S      + V   +     +  +   D+D +     +V   Y LMPM
Sbjct: 324 PFSG-----ERVRLAIQPGLRACVLTPADEDGR-----EVALMYYLMPM 362


>gi|209554064|ref|YP_002284498.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541565|gb|ACI59794.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 379

 Score = 38.9 bits (89), Expect = 1.3,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106
            +    G I V+A +L  ++ KL+D +         I   K     T++N  + +S    
Sbjct: 61  FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           NF L+ + +   P    +E      + + VL N++     +   E+I+  ++G+      
Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225
            D +L A+ TD  + +      + +  K        K + E+LR +  S +  V   +  
Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
             +   +    +  R+IDG +PN  ++   +N+++
Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264


>gi|296128245|ref|YP_003635495.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM
           20109]
 gi|296020060|gb|ADG73296.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM
           20109]
          Length = 327

 Score = 38.9 bits (89), Expect = 1.5,   Method: Compositional matrix adjust.
 Identities = 35/147 (23%), Positives = 60/147 (40%), Gaps = 15/147 (10%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           L G+  H++   L+L  V  D  RLAVA V +         ++ P   + ++       D
Sbjct: 141 LAGVLMHLDATSLRL--VGCDRSRLAVATVPVRRPSGAEVRVVAPLAFLDDLASAELPAD 198

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             V +    SR    +E L      +D  +P+YQ ++     + + V   +L +AVD   
Sbjct: 199 GPVVLG---SR---TLEVLGRHGEPLDAAYPDYQQLLRSGGSRHVTVATVDLVEAVDGAD 252

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPD 303
            +  VR       L  D++ +    PD
Sbjct: 253 EIVVVR-------LDGDRVALGAPGPD 272


>gi|167974938|ref|ZP_02557215.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|167975179|ref|ZP_02557456.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|167989088|ref|ZP_02570759.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|168362255|ref|ZP_02695434.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195867361|ref|ZP_03079365.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273299|ref|ZP_03205835.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225551555|ref|ZP_03772501.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903556|gb|EDT49845.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188018688|gb|EDU56728.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997710|gb|EDU66807.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660141|gb|EDX53521.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660837|gb|EDX54090.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249819|gb|EDY74599.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379370|gb|EEH01735.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 379

 Score = 38.5 bits (88), Expect = 1.6,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106
            +    G I V+A +L  ++ KL+D +         I   K     T++N  + +S    
Sbjct: 61  FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           NF L+ + +   P    +E      + + VL N++     +   E+I+  ++G+      
Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225
            D +L A+ TD  + +      + +  K        K + E+LR +  S +  V   +  
Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
             +   +    +  R+IDG +PN  ++   +N+++
Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264


>gi|323490679|ref|ZP_08095881.1| sucrose-6-phosphate hydrolase-like protein [Planococcus donghaensis
           MPA1U2]
 gi|323395561|gb|EGA88405.1| sucrose-6-phosphate hydrolase-like protein [Planococcus donghaensis
           MPA1U2]
          Length = 489

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 27/109 (24%), Positives = 47/109 (43%), Gaps = 11/109 (10%)

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R +  E  ++   A    +I+ R A GE + I    +   ++   + + HL ++S S+ +
Sbjct: 390 RASGEEKTVIQYDATQEKVILDRTASGEEVAIAYGTERKYQLDGEKIKFHLFVDSSSVEI 449

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            + DGE      + P +  KE+R   TN            SV  +AVK 
Sbjct: 450 FVNDGEAVFTSRIFPSAESKEIRFFATN-----------GSVNFKAVKW 487


>gi|213692129|ref|YP_002322715.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523590|gb|ACJ52337.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458246|dbj|BAJ68867.1| hypothetical protein BLIJ_1280 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 357

 Score = 38.5 bits (88), Expect = 2.0,   Method: Compositional matrix adjust.
 Identities = 31/125 (24%), Positives = 55/125 (44%), Gaps = 19/125 (15%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +++ V+  +   ++ HA R++ER N      +V L A D  L I A+G      G + A+
Sbjct: 2   VRVLVDAREFANMVAHAARVLERDNP-----YVALDAADDGLAISAAGDSQWSHGRVDAT 56

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN-----ISHGDSNFYLQSFPE 115
           V   GS  VS   L  +   +  G         E+G E N     +  G+++  ++   E
Sbjct: 57  VLEAGSAVVSGLWLNALANAMPSG---------EIGVETNGGYLTLRGGEASLRMRVGEE 107

Query: 116 SEFPS 120
            + P+
Sbjct: 108 KDRPA 112


>gi|167972399|ref|ZP_02554676.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184209326|gb|EDU06369.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 379

 Score = 38.1 bits (87), Expect = 2.2,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106
            +    G I V+A +L  ++ KL+D +         I   K     T++N  + +S    
Sbjct: 61  FEHFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           NF L+ + +   P    +E      + + VL N++     +   E+I+  ++G+      
Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225
            D +L A+ TD  + +      + +  K        K + E+LR +  S +  V   +  
Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
             +   +    +  R+IDG +PN  ++   +N+++
Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264


>gi|330469507|ref|YP_004407250.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
 gi|328812478|gb|AEB46650.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
          Length = 396

 Score = 38.1 bits (87), Expect = 2.3,   Method: Compositional matrix adjust.
 Identities = 29/124 (23%), Positives = 56/124 (45%), Gaps = 15/124 (12%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
           FA+ T+     L G+ F + +  L+L  VATD HRLAVA  +       +   ++P   V
Sbjct: 135 FAVGTDPTVPALTGVLFDVTDSGLEL--VATDRHRLAVATAEATVHGPAV-RTLLPLDTV 191

Query: 206 GEILRILSSKD------------SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
             +  +L +              + V++++S S +  ++    +    +  +FP+Y  ++
Sbjct: 192 DALRHLLDASAGAGAGAGAGADRAVVELTVSGSSLVADVAGHELRATALPYDFPDYHALL 251

Query: 254 PCSN 257
           P S 
Sbjct: 252 PRSG 255


>gi|326803684|ref|YP_004321502.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
 gi|326650281|gb|AEA00464.1| ribonuclease R [Aerococcus urinae ACS-120-V-Col10a]
          Length = 774

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 18/62 (29%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215
           Y+ GI      E++  C V +DG      E+ ++A+IA+ PS+  P +  G +++ +  K
Sbjct: 156 YIGGIRIQNKGEEMMTCFVLSDGLHPVEGEI-VIAEIAEYPSLDQPLQMTGRVIQTIGHK 214

Query: 216 DS 217
           D+
Sbjct: 215 DA 216


>gi|301633590|gb|ADK87144.1| DNA polymerase III, beta subunit [Mycoplasma pneumoniae FH]
          Length = 380

 Score = 37.7 bits (86), Expect = 2.8,   Method: Compositional matrix adjust.
 Identities = 60/360 (16%), Positives = 160/360 (44%), Gaps = 28/360 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+ + ++++ ++L     +I   N + P   ++L++A +  +   A+         +  
Sbjct: 1   MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60

Query: 60  SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENEL-----GTEVNISHGDSNFYLQS 112
           ++DV   G + V   +  +++  +++   I   K+  L      T +N++  D     + 
Sbjct: 61  NIDVLEEGEVIVKGKIFSELINGIKEDIIIIQEKDQTLLVKTKKTNINLNTIDK----KE 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT--EEIRYYLNGIFFHINEEDLK 170
           FP   F    + +     ++  S+L   +++   A++T  E  R + NG+ F+      +
Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKF-NGVNFN-GSNGKQ 174

Query: 171 LCAVATDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           +   A+D ++L+V E+       + + +   +  I       G+++ I   K+    +S 
Sbjct: 175 IFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLS- 233

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVR 282
             + + + +++  ++   I+  FP    +     + ++ +    L+ A+ R+ ++  + R
Sbjct: 234 --TELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNER 291

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
                + +++  L +  +  ++G ++E +  + +    ++I  N   LLE ID+  +DE+
Sbjct: 292 FFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEI 351


>gi|149197397|ref|ZP_01874448.1| serine/threonine-protein kinase [Lentisphaera araneosa HTCC2155]
 gi|149139415|gb|EDM27817.1| serine/threonine-protein kinase [Lentisphaera araneosa HTCC2155]
          Length = 655

 Score = 37.7 bits (86), Expect = 3.1,   Method: Compositional matrix adjust.
 Identities = 27/65 (41%), Positives = 34/65 (52%), Gaps = 10/65 (15%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP-EIEITGAIPAS 60
           K+T ER+DI  L G    ++ RK   P         ND   E +AS P E+  T AIPAS
Sbjct: 229 KLTDERTDIYSLGGILYSLLSRKTPFP--------RNDINFERRASAPSEVSSTNAIPAS 280

Query: 61  VD-VC 64
           +D VC
Sbjct: 281 LDAVC 285


>gi|160898840|ref|YP_001564422.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1]
 gi|160364424|gb|ABX36037.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1]
          Length = 174

 Score = 37.7 bits (86), Expect = 3.3,   Method: Compositional matrix adjust.
 Identities = 33/115 (28%), Positives = 50/115 (43%), Gaps = 20/115 (17%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
            A A +++RYYL G+   IN+  +    VATDG RL  A     A+    P II     +
Sbjct: 13  LAAAKKDLRYYLKGVL--INDRHI----VATDGSRLHAARHG--AEWLHGPRII----PI 60

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
             +L  L  K    +++L             +    +DG FP Y+ V+P   + E
Sbjct: 61  DNLLLALKKKSDLTEITLCSVG--------DVIYAPVDGVFPAYERVLPRGTEPE 107


>gi|291333915|gb|ADD93595.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 84

 Score = 37.4 bits (85), Expect = 3.5,   Method: Compositional matrix adjust.
 Identities = 30/98 (30%), Positives = 50/98 (51%), Gaps = 14/98 (14%)

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +SL+ D L +  +NP+   A E + V Y+   ++I FN  YL E +  I     +  E+V
Sbjct: 1   MSLNKDLLKIEANNPEKESAEEEIKVDYSGPELEIGFNISYLQESLTTIKD---LSAEIV 57

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           F      SS  ++        NK+N+ +  +V+MPMR+
Sbjct: 58  FF--GQESSCIVK--------NKENE-DLIHVIMPMRL 84


>gi|313667162|gb|ADR73024.1| carboxylesterase [Laodelphax striatellus]
 gi|313667164|gb|ADR73025.1| carboxylesterase [Laodelphax striatellus]
          Length = 621

 Score = 37.4 bits (85), Expect = 3.6,   Method: Compositional matrix adjust.
 Identities = 32/98 (32%), Positives = 43/98 (43%), Gaps = 20/98 (20%)

Query: 53  ITGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENEL-----GTEVN----- 100
            T  IP  +D+CG   + A LL  I    +LQ     SF  +  L     G EVN     
Sbjct: 443 FTAMIPGLIDICGVTLLKACLLQQIRHNWQLQPSYLYSFNYKGHLTKFGYGEEVNYPFGG 502

Query: 101 -ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137
            ++H D   YL       FP TK E Y +  E+A +V+
Sbjct: 503 GVAHSDDLLYL-------FPHTKGELYPHEVEVAKTVV 533


>gi|330949283|gb|EGH49543.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 43

 Score = 37.4 bits (85), Expect = 3.7,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V
Sbjct: 1   DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTV 43


>gi|225550400|ref|ZP_03771349.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379554|gb|EEH01916.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 379

 Score = 37.4 bits (85), Expect = 3.7,   Method: Compositional matrix adjust.
 Identities = 53/275 (19%), Positives = 114/275 (41%), Gaps = 26/275 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKISTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VDV--CGSITVSAHLLYDIVRKLQDGA--------QISFFKENELGTEVNISHGDS---- 106
            +    G I V+A +L  ++ KL+D +         I   K     T++N  + +S    
Sbjct: 61  FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVDTNILLIKTENFETQINTMNIESFPSL 120

Query: 107 NFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE 166
           NF L+ + +   P    +E      + + VL N++     +   E+I+  ++G+      
Sbjct: 121 NFSLEDYVKISLPHQIMQE------INAKVLPNVLN----SQGIEKIQP-ISGVLIDTET 169

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSE 225
            D +L A+ TD  + +      + +  K        K + E+LR +  S +  V   +  
Sbjct: 170 LDNQLIAIGTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRN 229

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
             +   +    +  R+IDG +PN  ++   +N+++
Sbjct: 230 KSLVFKVNDAILQTRMIDGVYPNVYSIFNETNEEK 264


>gi|213052919|ref|ZP_03345797.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 72

 Score = 37.4 bits (85), Expect = 4.4,   Method: Compositional matrix adjust.
 Identities = 24/86 (27%), Positives = 47/86 (54%), Gaps = 14/86 (16%)

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +  + V       R+  ++S   +
Sbjct: 1   NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKCETV-------RIMLTDSVSSV 53

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D  S+       +A YV+MPMR+
Sbjct: 54  QIEDAASQ-------SAAYVVMPMRL 72


>gi|222476013|ref|YP_002564534.1| hypothetical protein Hlac_3109 [Halorubrum lacusprofundi ATCC
           49239]
 gi|222454384|gb|ACM58648.1| conserved hypothetical protein [Halorubrum lacusprofundi ATCC
           49239]
          Length = 375

 Score = 37.0 bits (84), Expect = 5.5,   Method: Compositional matrix adjust.
 Identities = 33/124 (26%), Positives = 60/124 (48%), Gaps = 18/124 (14%)

Query: 78  VRKLQDG---AQISFFKENELGTEV------NISHGDSNFYLQSFPESEFPSTKEEEYVY 128
            R+++DG   A +SF++E + G +V      ++ HG  +  LQS P  +    +      
Sbjct: 233 TRQIEDGHCYAGLSFYRERDEGDDVIRAALAHVFHGRDHIILQSDPLPDITEDENGSPHL 292

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLN--GIFFHINEEDLKLCAVATDGHRLAVAEV 186
           S+E A  V + ++E       T   R+ L+   +F+   EE+ +    ATDG    V ++
Sbjct: 293 SYEAARQVGEQILEYYEAQKGTRPSRFVLHKPSVFW---EEEREGLLDATDG----VRDL 345

Query: 187 DIVA 190
           D+V+
Sbjct: 346 DLVS 349


>gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit [Mycoplasma pneumoniae M129]
 gi|2494195|sp|Q50313|DPO3B_MYCPN RecName: Full=DNA polymerase III subunit beta
 gi|11379480|gb|AAG34739.1|AE000016_1 DNA polymerase III beta subunit [Mycoplasma pneumoniae M129]
 gi|1209517|gb|AAC43645.1| DnaN [Mycoplasma pneumoniae]
          Length = 380

 Score = 37.0 bits (84), Expect = 5.9,   Method: Compositional matrix adjust.
 Identities = 59/360 (16%), Positives = 158/360 (43%), Gaps = 28/360 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+ + ++++ ++L     +I   N + P   ++L++A +  +   A+         +  
Sbjct: 1   MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60

Query: 60  SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           ++DV   G + V   +  +++    +G +       E    + +    +N  L +  + E
Sbjct: 61  NIDVLEEGEVIVKGKIFSELI----NGIKEDIITIQEKDQTLLVKTKKTNINLNTIDKKE 116

Query: 118 FPSTKEEEYVY-----SFELASSVLKNLVERTHFAMAT--EEIRYYLNGIFFHINEEDLK 170
           FP  +  + V        ++  S+L   +++   A++T  E  R + NG+ F+      +
Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKF-NGVNFN-GSNGKQ 174

Query: 171 LCAVATDGHRLAVAEV-------DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           +   A+D ++L+V E+       + + +   +  I       G+++ I   K+    +S 
Sbjct: 175 IFLEASDSYKLSVYEIKQKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDLS- 233

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVR 282
             + + + +++  ++   I+  FP    +     + ++ +    L+ A+ R+ ++  + R
Sbjct: 234 --TELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNER 291

Query: 283 IQAVKLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
                + +++  L +  +  ++G ++E +  + +    ++I  N   LLE ID+  +DE+
Sbjct: 292 FFLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDTDEI 351


>gi|48697221|ref|YP_024951.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B]
 gi|47779027|gb|AAT38390.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B]
          Length = 171

 Score = 36.6 bits (83), Expect = 6.2,   Method: Compositional matrix adjust.
 Identities = 21/87 (24%), Positives = 45/87 (51%), Gaps = 8/87 (9%)

Query: 174 VATDGHRLAV----AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           VATDGH+  V     E D+ A   +   +I+P +A+  +    S     V++ + + +  
Sbjct: 13  VATDGHKAGVFRYAVENDVPA--GETAEVIIPHEAIDRLKAAKSDLVHFVRLEVEDRQCS 70

Query: 230 LNIESLSMSVRLI--DGEFPNYQNVIP 254
           L ++++   ++ +  DG +P+Y+ + P
Sbjct: 71  LCVDAMGARIQFVAVDGRYPDYRRIFP 97


>gi|55376414|ref|YP_134266.1| hypothetical protein pNG6002 [Haloarcula marismortui ATCC 43049]
 gi|55229139|gb|AAV44560.1| unknown [Haloarcula marismortui ATCC 43049]
          Length = 472

 Score = 36.2 bits (82), Expect = 8.8,   Method: Compositional matrix adjust.
 Identities = 34/132 (25%), Positives = 63/132 (47%), Gaps = 19/132 (14%)

Query: 78  VRKLQDG---AQISFFKENELGTEV------NISHGDSNFYLQSFPESEFPSTKEEEYVY 128
            R+++DG   A +SF++E + G +V      ++ HG  +  LQS P  +    +      
Sbjct: 233 TRQIEDGHCYAGLSFYRERDEGDDVIRAALAHVFHGRDHIILQSDPLPDITEDENGSPHL 292

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLN--GIFFHINEEDLKLCAVATDGHRLAVAEV 186
           S+E A  V + ++E       T   R+ L+   +F+   EE+ +    ATDG    V ++
Sbjct: 293 SYEAARQVGEQILEYYEAQKGTRPSRFVLHKPSVFW---EEEREGLLDATDG----VRDL 345

Query: 187 DIVAQIAKMPSI 198
           D+V  + + P +
Sbjct: 346 DLV-WVRRRPKV 356


>gi|319440486|ref|ZP_07989642.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM
           44702]
          Length = 136

 Score = 36.2 bits (82), Expect = 9.0,   Method: Compositional matrix adjust.
 Identities = 33/125 (26%), Positives = 59/125 (47%), Gaps = 8/125 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           +  TV + D    L    R +  K + P+   VL++A +  L++  SG + E++  +  S
Sbjct: 12  VSFTVAKDDFSSALAWVARSLPSKASQPILRGVLIEATEDGLQL--SGFDREVSTKVRVS 69

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            DV   G I V+  L  +I+  L D       + +  GT+V ++ G S+F L +    ++
Sbjct: 70  ADVAEPGRILVAGRLASNIIGALPDKP----VRIDYDGTKVLVNCGSSHFELPAMTIDDY 125

Query: 119 PSTKE 123
           P   E
Sbjct: 126 PVLPE 130


Searching..................................................done


Results from round 2




>gi|254780454|ref|YP_003064867.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
 gi|254040131|gb|ACT56927.1| DNA polymerase III subunit beta [Candidatus Liberibacter asiaticus
           str. psy62]
          Length = 385

 Score =  446 bits (1148), Expect = e-123,   Method: Composition-based stats.
 Identities = 385/385 (100%), Positives = 385/385 (100%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS
Sbjct: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS
Sbjct: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR
Sbjct: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR
Sbjct: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD
Sbjct: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR
Sbjct: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           GKDKDSKNNKDNKVNAFYVLMPMRI
Sbjct: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385


>gi|323135990|ref|ZP_08071073.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242]
 gi|322399081|gb|EFY01600.1| DNA polymerase III, beta subunit [Methylocystis sp. ATCC 49242]
          Length = 372

 Score =  406 bits (1044), Expect = e-111,   Method: Composition-based stats.
 Identities = 165/387 (42%), Positives = 236/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L  LGH  R++ER+ TIP+  +VL+ A D  L +KA+  ++EIT   PA 
Sbjct: 1   MKVTIERAALLRALGHVHRVVERRTTIPILANVLIDARDDALTLKATDLDLEITEKAPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T+ AH LYDIVRKL +GAQ+S     E G ++ +  G S F L + PES+FP 
Sbjct: 61  VGQPGATTLPAHTLYDIVRKLPEGAQVSLDASGEAG-QLTLRSGRSRFNLSTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               ++ + F+LA + LK L+E+T FA+++EE RYYLNGI+ H  +    L L AVATDG
Sbjct: 120 VTSGDFSHRFQLAPADLKRLIEKTQFAISSEETRYYLNGIYIHAMDVDGQLMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+   A  A MP +I+PRKAV E+ R++      V V LS +++  +     ++
Sbjct: 180 HRLARLELPAPAGCADMPGVILPRKAVTEVQRLIEDAQGDVSVELSTNKMRFSFGDALLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V      +AVDRVS +SS R +AVK++L+  KL ++
Sbjct: 240 TKLIDGTFPDYSRVIPAGNDKRLTVERDVFAKAVDRVSTISSERGRAVKMALTEGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A+E +   Y+  P+D+ FN +YLL+I   + S     D  +F+L    S   
Sbjct: 300 VTNPDQGSAVEELEADYDGAPLDVGFNARYLLDITQQLDS-----DTALFKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D           +A YVLMPMR+
Sbjct: 355 IQDRD---------GASALYVLMPMRV 372


>gi|86747129|ref|YP_483625.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris HaA2]
 gi|86570157|gb|ABD04714.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris HaA2]
          Length = 372

 Score =  402 bits (1033), Expect = e-110,   Method: Composition-based stats.
 Identities = 176/387 (45%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  +SF L +S +K L++RT FA++TEE RYYLNGI+ H     +D KL AVATDG
Sbjct: 120 LAAGEMSHSFSLTASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKDAKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   A  A MP +IVPRK VGE+ R++   D+ + + LS  +I   I ++ ++
Sbjct: 180 HRLAQVDLTQPAGAAGMPGVIVPRKTVGEVQRLIEDNDAEIGLELSVGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I  +       V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D         K NA YVLMPMR+
Sbjct: 355 IQDRD---------KKNALYVLMPMRV 372


>gi|115522032|ref|YP_778943.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisA53]
 gi|115515979|gb|ABJ03963.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris
           BisA53]
          Length = 372

 Score =  401 bits (1032), Expect = e-110,   Method: Composition-based stats.
 Identities = 172/387 (44%), Positives = 241/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A  G L +KA+  ++E+T ++PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAEKGRLSLKATDLDLEVTESLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATPGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               E  +SF L +S +K L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMTHSFALPASDVKRLIDRTQFAISTEETRYYLNGIYLHSAGSAVAATLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +  A MP +IVPRK VGE+ R++   + SV + LS ++I   I  + ++
Sbjct: 180 HRLAQLDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDSEVSVGIELSTNKIRFTIGDVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+ T+   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKTDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I       +  V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D            A YVLMPMR+
Sbjct: 355 IQDRDA---------KGALYVLMPMRV 372


>gi|304392440|ref|ZP_07374381.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130]
 gi|303295544|gb|EFL89903.1| DNA polymerase III, beta subunit [Ahrensia sp. R2A130]
          Length = 371

 Score =  400 bits (1029), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/387 (44%), Positives = 245/387 (63%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ER+++L+ L H  R++ER+NTIP+  +VLL+A DG L +KA+  ++E+T    A 
Sbjct: 1   MRLTLERANLLKSLNHVQRVVERRNTIPILSNVLLKAEDGGLMLKATDLDLEVTEKTTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSAH LYDIVRKL DG+Q+    +   G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQSGATTVSAHTLYDIVRKLPDGSQVLLAVDESNG--LLVRAGRSQFRLQMLPESDFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E+ ++F +  +  K L++RT FA++TEE RYYLNGI+ H  E D K  L AVATDG
Sbjct: 119 LTAAEFTHTFRMGCADFKALIDRTQFAISTEETRYYLNGIYLHAVEADGKEMLRAVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+ +     + MP IIVPRK VGEI ++L   D+ V V LS+S+I   +  + ++
Sbjct: 179 HRLAQAQTEAPDGASGMPGIIVPRKTVGEIQKLLEDPDAFVTVELSDSKIRFTVGEVVLT 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  N KEL ++      AVDRVS ++S R +AVKLS+S  +L ++
Sbjct: 239 SKLIDGTFPDYNRVIPSGNTKELLLDRATFSSAVDRVSTIASDRGRAVKLSISDGQLTLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y++  MDI FN +YLL+I + +S+     +E  F L  + S   
Sbjct: 299 VNNPDSGSAEEELAVGYSDDDMDIGFNSRYLLDITNQLSA-----EETTFMLADAGSPTL 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR K +D          A YVLMPMR+
Sbjct: 354 IREKGQD---------GALYVLMPMRV 371


>gi|158422637|ref|YP_001523929.1| DNA polymerase III subunit beta [Azorhizobium caulinodans ORS 571]
 gi|158329526|dbj|BAF87011.1| DNA polymerase III beta chain [Azorhizobium caulinodans ORS 571]
          Length = 372

 Score =  399 bits (1027), Expect = e-109,   Method: Composition-based stats.
 Identities = 164/387 (42%), Positives = 240/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+++L+ L H  R++ER+NTIP+  +VL++     L +KA+  ++E+   +PA 
Sbjct: 1   MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIRTGTNGLSLKATDLDLEVVETVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH+LYDIVRKL DG+Q+      E G  + +  G + F LQ+ PE++FP 
Sbjct: 61  VGQDGATTVPAHVLYDIVRKLPDGSQVQLEAGGERGN-LTVRAGRARFTLQTLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               ++ +SF++  +  + LV++T FA++TEE RYYLNGI+ H+ +     KL AVATDG
Sbjct: 120 LAAGDFSHSFKVKGAEFRRLVDKTQFAISTEETRYYLNGIYLHVADAAGTAKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+D     A +P +IVPRK V EI ++L  KD+ V VSLS ++I + + ++ ++
Sbjct: 180 HRLAQAELDAPEGSAGLPGVIVPRKTVAEIQKLLEDKDAEVTVSLSTTKIRVAVGAIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V+ ++   AVDRVS +SS R +AVKLS+   KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPAGNDKILLVDKSDFAAAVDRVSTVSSERGRAVKLSIQDGKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   +       D    +L    S   
Sbjct: 300 VTNPDSGSATEELEVDYAAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R            K ++ YVLMPMR+
Sbjct: 355 VRD---------STKTDSLYVLMPMRV 372


>gi|316931398|ref|YP_004106380.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris DX-1]
 gi|315599112|gb|ADU41647.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris DX-1]
          Length = 372

 Score =  399 bits (1026), Expect = e-109,   Method: Composition-based stats.
 Identities = 167/387 (43%), Positives = 238/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               E  ++F L +S +K L++RT FA++TEE RYYLNGI+ H         L AVATDG
Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSSGAASLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +    MP +IVPRK VGE+ R++   ++ + + LS  +I   + ++ ++
Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I  +       V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D  S         A YVLMPMR+
Sbjct: 355 IQDRDSKS---------ALYVLMPMRV 372


>gi|15964088|ref|NP_384441.1| DNA polymerase III subunit beta [Sinorhizobium meliloti 1021]
 gi|15073264|emb|CAC41772.1| Probable DNA polymerase III, beta chain [Sinorhizobium meliloti
           1021]
          Length = 372

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 184/387 (47%), Positives = 254/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEV-RLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF L +  LK L++RT FA++TEE RYYLNGIF H   +  DLKL AVATDG
Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK V E+ ++L S D  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP SNDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN KYLL+I   ++       E VF L    S   
Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDITGQLTG-----GEAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +A YVLMPMR+
Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372


>gi|222147282|ref|YP_002548239.1| DNA polymerase III subunit beta [Agrobacterium vitis S4]
 gi|221734272|gb|ACM35235.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
          Length = 412

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 178/387 (45%), Positives = 251/387 (64%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A    L +KA+  ++E+T A PA+
Sbjct: 41  MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRAEGQSLSMKATDLDLEVTEATPAN 100

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ TV AHLLY+IVRKL DGA++     N  G  + ++ G S F LQ  PE +FP 
Sbjct: 101 IEQAGATTVPAHLLYEIVRKLSDGAEVLLST-NPDGASMTVASGRSKFSLQCLPEQDFPD 159

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF+L +S LK L++RT FA++TEE RYYLNGI+ H  E D  LKL AVATDG
Sbjct: 160 LTTGSFSHSFKLKASDLKMLIDRTQFAISTEETRYYLNGIYLHTIEADGKLKLRAVATDG 219

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK VGE+ +++ + D  V + +S+++I  NI  + M+
Sbjct: 220 HRLARADVEAPSGSEGMPGIIIPRKTVGELQKLVDNPDLIVALEVSDAKIRFNIGEIVMT 279

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP +NDKE+RV+C    +AVDRVS +SS R +AVKL++    L +T
Sbjct: 280 SKLIDGTFPDYQRVIPQANDKEMRVDCQTFARAVDRVSTISSERGRAVKLAIGDGHLMLT 339

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y    M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 340 VNNPDSGSATEEVAVGYESDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 394

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 395 IRDTAGD---------DALYVLMPMRV 412


>gi|85711020|ref|ZP_01042081.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145]
 gi|85695424|gb|EAQ33361.1| DNA polymerase sliding clamp subunit [Idiomarina baltica OS145]
          Length = 367

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 135/386 (34%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R   L+ L      +ER++T+P+  ++LL+     L +  +  E+E+  ++   
Sbjct: 1   MKFTVSRDAFLKPLQIVSGAVERRHTLPILSNLLLKVEGDTLRLTGTDLEVELISSVKVE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G +TV A  L DIVR L D + I    ++E    V +  G S F L S    +FP
Sbjct: 61  SSGGDGMVTVPAKKLLDIVRSLPDESPIELVGDDEG---VRVRSGRSKFKLSSLSADDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++     +F  +   LK L+E+THF+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIEDWSSEVNFITSQDTLKRLMEKTHFSMANQDVRYYLNGMLFETDANMLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I         +IVPRK V E+LR+L+  DS V V++  + I +    +  + 
Sbjct: 176 RLAMSNCHIEQPGLSQRQVIVPRKGVVELLRLLNEDDSEVAVAIGNNHIRVETADIVFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK++  +   LRQA  R SI+S+ + + V+L++++ +LC+T 
Sbjct: 236 KLVDGRFPDYRRVVPQGGDKQIFADRDLLRQAFGRASILSNEKFRGVRLNITAGELCITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A E + V Y    ++I FN  YLL++++NI +     +EV F L  +NSS  I
Sbjct: 296 TNPEQEQAEEVIEVNYEGEAIEIGFNVSYLLDVLNNIEA-----EEVCFVLSDANSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             KD DS           YV+MPMR+
Sbjct: 351 EPKDDDS---------CCYVVMPMRL 367


>gi|284923784|emb|CBG36882.1| DNA polymerase III beta-subunit [Escherichia coli 042]
          Length = 366

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QSHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|154243960|ref|YP_001414918.1| DNA polymerase III subunit beta [Xanthobacter autotrophicus Py2]
 gi|154158045|gb|ABS65261.1| DNA polymerase III, beta subunit [Xanthobacter autotrophicus Py2]
          Length = 373

 Score =  398 bits (1024), Expect = e-109,   Method: Composition-based stats.
 Identities = 165/388 (42%), Positives = 240/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+++L+ L H  R++ER+NTIP+  +VL++A    LE+KA+  ++E+  ++PA 
Sbjct: 1   MKVTVERAELLKSLSHVHRVVERRNTIPILANVLIKAGKNGLELKATDLDLEVVESVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+LYDIVRKL +GAQ+      E GT + +    + F LQ+ PE++FP 
Sbjct: 61  TGQAGATTVPAHVLYDIVRKLPEGAQVQLEAGGERGT-LTVKASRARFSLQTLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL---KLCAVATD 177
               E+ ++F++  +  + LV++T FA++TEE RYYLNGI+ H+ E       L AVATD
Sbjct: 120 LAAGEFSHTFKVKGADFRRLVDKTQFAISTEETRYYLNGIYLHVTEGAGGKSMLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA AE++  A  A +P +IVPRK V EI ++L  K++   VSLS ++I + + S+ +
Sbjct: 180 GHRLAQAELEAPAGAAGLPGVIVPRKTVAEIQKLLEDKEAEATVSLSTTKIRVQVGSIVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP  NDK L V+      AVDRVS +SS R +AVKLSL+  K+ +
Sbjct: 240 TSKLIDGTFPDYGRVIPQGNDKTLIVDKDEFAAAVDRVSTVSSERGRAVKLSLAEGKMTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E + V Y   P+DI FN +YLL+I   +       D    +L    S  
Sbjct: 300 SVTNPDSGSATEELEVDYTAEPLDIGFNSRYLLDITSQLEG-----DTAELKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R            K +A YVLMPMR+
Sbjct: 355 LVRD---------STKTDALYVLMPMRV 373


>gi|317494668|ref|ZP_07953080.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
 gi|316917270|gb|EFV38617.1| DNA polymerase III [Enterobacteriaceae bacterium 9_2_54FAA]
          Length = 366

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +P A
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLLLTGTDLEMEMIARVPLA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L DGA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QEHETGATTVPARKFFDICRGLPDGAEITVVLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKKLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+ R+L   ++ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSVPSHSVIVPRKGVMELSRLLDGGETPLRLQIGSNNIRAHVGGFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+  C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKAGCDELKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVNYEGTDLEIGFNVSYVLDVLNALKC-----EDVHMLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|299133398|ref|ZP_07026593.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2]
 gi|298593535|gb|EFI53735.1| DNA polymerase III, beta subunit [Afipia sp. 1NLS2]
          Length = 372

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 166/387 (42%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A++  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRADNARLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF L+++ +K L++RT FA++TEE RYYLNGI+ H   + ++  L AVATDG
Sbjct: 120 LAAGEMTHSFTLSAADMKRLIDRTQFAISTEETRYYLNGIYLHAAGSGKEQTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +IVPRK VGE+ R++   ++ + + LS+ +I   + ++ ++
Sbjct: 180 HRLAQFDLPLPKSAVGMPGVIVPRKTVGEVQRLIEDNEAEISIELSQGKIRFTLANVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +N+KEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELIVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I       D  V +L    S   
Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----DAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ K            +A YVLMPMR+
Sbjct: 355 VQDK---------ANRDALYVLMPMRV 372


>gi|307301232|ref|ZP_07580994.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C]
 gi|307317903|ref|ZP_07597340.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
 gi|306896305|gb|EFN27054.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
 gi|306903688|gb|EFN34275.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti BL225C]
          Length = 372

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 184/387 (47%), Positives = 254/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEV-RLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF L +  LK L++RT FA++TEE RYYLNGIF H   +  DLKL AVATDG
Sbjct: 120 LTAGTFSHSFRLKAPDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGDLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK V E+ ++L S D  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDSPDVVVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP SNDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALADGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN KYLL+I   ++       E VF L    S   
Sbjct: 300 VNNPDSGSATEELPVGYESDPLEIGFNAKYLLDITGQLTGS-----EAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +A YVLMPMR+
Sbjct: 355 VRDLAAE---------DALYVLMPMRV 372


>gi|90420503|ref|ZP_01228410.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
 gi|90335231|gb|EAS48984.1| DNA polymerase III, beta subunit [Aurantimonas manganoxydans
           SI85-9A1]
          Length = 374

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 173/389 (44%), Positives = 247/389 (63%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ERS++L+ L H  R++ER+NTIP+  +VLL+     L +KA+  ++EIT + PA+
Sbjct: 1   MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLKTEGEGLRLKATDLDLEITESAPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+ TV AHLLYDIVRKL DGA++S    N  GT++ +S G SNF LQ  PES+FP 
Sbjct: 61  GEQEGATTVPAHLLYDIVRKLPDGAEVS-LATNAEGTQMTVSSGRSNFRLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                  ++F+L ++ L  L+ERT FA++TEE RYYLNGI+ H    + DL+L AVATDG
Sbjct: 120 ITAGTLSHAFKLKAAELGRLIERTQFAISTEETRYYLNGIYLHTIEADGDLQLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236
           HRLA A+    A    MP II+PRK VGE+ ++L     ++ + V LS+++I   I ++ 
Sbjct: 180 HRLARADQKAPAGSEGMPGIIIPRKTVGELQKLLGDSNDEAEISVELSDAKIRFTIGAVV 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M+ +LIDG FP+YQ VIP +NDK L ++      AVDRVS +SS R +AVKL+++  +L 
Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKALTLDRQTFSAAVDRVSTISSERGRAVKLAVADSQLV 299

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +TV++PD G A E + V Y+   ++I FN KYLL+I + +S      DE VF L    S 
Sbjct: 300 LTVNSPDSGTATEELAVGYDSDEIEIGFNAKYLLDITNQLSG-----DETVFMLADPGSP 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+    D+           YVLMPMR+
Sbjct: 355 TLIKDGGDDA---------TLYVLMPMRV 374


>gi|293464025|ref|ZP_06664439.1| DNA polymerase III [Escherichia coli B088]
 gi|300815052|ref|ZP_07095277.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1]
 gi|291321657|gb|EFE61093.1| DNA polymerase III [Escherichia coli B088]
 gi|300531944|gb|EFK53006.1| DNA polymerase III, beta subunit [Escherichia coli MS 107-1]
 gi|323944173|gb|EGB40253.1| DNA polymerase III [Escherichia coli H120]
          Length = 366

 Score =  398 bits (1023), Expect = e-109,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QQHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|192288435|ref|YP_001989040.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris TIE-1]
 gi|192282184|gb|ACE98564.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris TIE-1]
          Length = 372

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 167/387 (43%), Positives = 240/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  ++F L +S +K L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +    MP +IVPRK VGE+ R++   ++ + + LS  +I   + ++ ++
Sbjct: 180 HRLAQLDLTLPSGADGMPGLIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKELRV+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELRVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I  +       V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D  S         A YVLMPMR+
Sbjct: 355 IQDRDSKS---------ALYVLMPMRV 372


>gi|39933082|ref|NP_945358.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris CGA009]
 gi|39652707|emb|CAE25446.1| DNA polymerase III beta subunit [Rhodopseudomonas palustris CGA009]
          Length = 372

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 166/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  ++F L +S +K L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMSHAFRLPASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSPKASSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +    MP +IVPRK VGE+ R++   ++ + + LS  +I   + ++ ++
Sbjct: 180 HRLAQLDLTLPSGADGMPGVIVPRKTVGEVQRLIEDTEAEIGIELSTGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELLVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I  +       V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D  S         A YVLMPMR+
Sbjct: 355 IQDRDSKS---------ALYVLMPMRV 372


>gi|15804295|ref|NP_290334.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 EDL933]
 gi|15833890|ref|NP_312663.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           Sakai]
 gi|16131569|ref|NP_418156.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|26250442|ref|NP_756482.1| DNA polymerase III subunit beta [Escherichia coli CFT073]
 gi|74314015|ref|YP_312434.1| DNA polymerase III subunit beta [Shigella sonnei Ss046]
 gi|82546035|ref|YP_409982.1| DNA polymerase III subunit beta [Shigella boydii Sb227]
 gi|82779230|ref|YP_405579.1| DNA polymerase III subunit beta [Shigella dysenteriae Sd197]
 gi|89110312|ref|AP_004092.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. W3110]
 gi|91213223|ref|YP_543209.1| DNA polymerase III subunit beta [Escherichia coli UTI89]
 gi|110644044|ref|YP_671774.1| DNA polymerase III subunit beta [Escherichia coli 536]
 gi|117625977|ref|YP_859300.1| DNA polymerase III subunit beta [Escherichia coli APEC O1]
 gi|157156673|ref|YP_001465186.1| DNA polymerase III subunit beta [Escherichia coli E24377A]
 gi|157163181|ref|YP_001460499.1| DNA polymerase III subunit beta [Escherichia coli HS]
 gi|168748583|ref|ZP_02773605.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|168753590|ref|ZP_02778597.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|168759887|ref|ZP_02784894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|168766188|ref|ZP_02791195.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|168772264|ref|ZP_02797271.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|168779923|ref|ZP_02804930.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|168798736|ref|ZP_02823743.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|170018063|ref|YP_001723017.1| DNA polymerase III subunit beta [Escherichia coli ATCC 8739]
 gi|170083203|ref|YP_001732523.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170682488|ref|YP_001746029.1| DNA polymerase III subunit beta [Escherichia coli SMS-3-5]
 gi|187730327|ref|YP_001882465.1| DNA polymerase III subunit beta [Shigella boydii CDC 3083-94]
 gi|188492542|ref|ZP_02999812.1| DNA polymerase III, beta subunit [Escherichia coli 53638]
 gi|191165808|ref|ZP_03027646.1| DNA polymerase III, beta subunit [Escherichia coli B7A]
 gi|191170441|ref|ZP_03031994.1| DNA polymerase III, beta subunit [Escherichia coli F11]
 gi|193063787|ref|ZP_03044874.1| DNA polymerase III, beta subunit [Escherichia coli E22]
 gi|194428142|ref|ZP_03060686.1| DNA polymerase III, beta subunit [Escherichia coli B171]
 gi|194431323|ref|ZP_03063616.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012]
 gi|194435912|ref|ZP_03068015.1| DNA polymerase III, beta subunit [Escherichia coli 101-1]
 gi|195936322|ref|ZP_03081704.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           EC4024]
 gi|208807282|ref|ZP_03249619.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208813217|ref|ZP_03254546.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208820496|ref|ZP_03260816.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209400437|ref|YP_002273227.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209921178|ref|YP_002295262.1| DNA polymerase III subunit beta [Escherichia coli SE11]
 gi|217324148|ref|ZP_03440232.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218551231|ref|YP_002385023.1| DNA polymerase III subunit beta [Escherichia fergusonii ATCC 35469]
 gi|218556266|ref|YP_002389180.1| DNA polymerase III subunit beta [Escherichia coli IAI1]
 gi|218560776|ref|YP_002393689.1| DNA polymerase III subunit beta [Escherichia coli S88]
 gi|218691989|ref|YP_002400201.1| DNA polymerase III subunit beta [Escherichia coli ED1a]
 gi|218697423|ref|YP_002405090.1| DNA polymerase III subunit beta [Escherichia coli 55989]
 gi|218702550|ref|YP_002410179.1| DNA polymerase III subunit beta [Escherichia coli IAI39]
 gi|218707347|ref|YP_002414866.1| DNA polymerase III subunit beta [Escherichia coli UMN026]
 gi|227883922|ref|ZP_04001727.1| DNA-directed DNA polymerase [Escherichia coli 83972]
 gi|237703501|ref|ZP_04533982.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA]
 gi|238902791|ref|YP_002928587.1| DNA polymerase III, beta subunit [Escherichia coli BW2952]
 gi|253771437|ref|YP_003034268.1| DNA polymerase III subunit beta [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|254038918|ref|ZP_04872970.1| DNA polymerase III [Escherichia sp. 1_1_43]
 gi|254163652|ref|YP_003046760.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606]
 gi|254795704|ref|YP_003080541.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           TW14359]
 gi|256021281|ref|ZP_05435146.1| DNA polymerase III subunit beta [Shigella sp. D9]
 gi|256025568|ref|ZP_05439433.1| DNA polymerase III subunit beta [Escherichia sp. 4_1_40B]
 gi|260846514|ref|YP_003224292.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|260857888|ref|YP_003231779.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|260870432|ref|YP_003236834.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|261225854|ref|ZP_05940135.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           FRIK2000]
 gi|261258899|ref|ZP_05951432.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           FRIK966]
 gi|291285120|ref|YP_003501938.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
           CB9615]
 gi|293407341|ref|ZP_06651263.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412]
 gi|293413155|ref|ZP_06655821.1| DNA polymerase III [Escherichia coli B354]
 gi|293417174|ref|ZP_06659801.1| DNA polymerase III [Escherichia coli B185]
 gi|297518856|ref|ZP_06937242.1| DNA polymerase III subunit beta [Escherichia coli OP50]
 gi|298383082|ref|ZP_06992677.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302]
 gi|300824314|ref|ZP_07104430.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7]
 gi|300896030|ref|ZP_07114591.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1]
 gi|300903024|ref|ZP_07120966.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1]
 gi|300917469|ref|ZP_07134129.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1]
 gi|300925525|ref|ZP_07141400.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1]
 gi|300932332|ref|ZP_07147600.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1]
 gi|300940886|ref|ZP_07155413.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1]
 gi|300947538|ref|ZP_07161715.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1]
 gi|300956293|ref|ZP_07168595.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1]
 gi|300983652|ref|ZP_07176693.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1]
 gi|300984541|ref|ZP_07177031.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1]
 gi|301020910|ref|ZP_07184965.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1]
 gi|301028494|ref|ZP_07191734.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1]
 gi|301047519|ref|ZP_07194595.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1]
 gi|301305953|ref|ZP_07212035.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1]
 gi|301325007|ref|ZP_07218557.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1]
 gi|301644373|ref|ZP_07244374.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1]
 gi|306815946|ref|ZP_07450084.1| DNA polymerase III subunit beta [Escherichia coli NC101]
 gi|307140401|ref|ZP_07499757.1| DNA polymerase III subunit beta [Escherichia coli H736]
 gi|307313230|ref|ZP_07592855.1| DNA polymerase III, beta subunit [Escherichia coli W]
 gi|309784249|ref|ZP_07678888.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617]
 gi|309795750|ref|ZP_07690165.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7]
 gi|312972007|ref|ZP_07786181.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70]
 gi|331644425|ref|ZP_08345554.1| DNA polymerase III, beta subunit [Escherichia coli H736]
 gi|331649527|ref|ZP_08350613.1| DNA polymerase III, beta subunit [Escherichia coli M605]
 gi|331655361|ref|ZP_08356360.1| DNA polymerase III, beta subunit [Escherichia coli M718]
 gi|331660043|ref|ZP_08360981.1| DNA polymerase III, beta subunit [Escherichia coli TA206]
 gi|331665351|ref|ZP_08366252.1| DNA polymerase III, beta subunit [Escherichia coli TA143]
 gi|331670545|ref|ZP_08371384.1| DNA polymerase III, beta subunit [Escherichia coli TA271]
 gi|331675191|ref|ZP_08375944.1| DNA polymerase III, beta subunit [Escherichia coli TA280]
 gi|331679799|ref|ZP_08380469.1| DNA polymerase III, beta subunit [Escherichia coli H591]
 gi|331685425|ref|ZP_08386011.1| DNA polymerase III, beta subunit [Escherichia coli H299]
 gi|332282512|ref|ZP_08394925.1| DNA polymerase III subunit beta [Shigella sp. D9]
 gi|71159295|sp|P0A990|DPO3B_ECO57 RecName: Full=DNA polymerase III subunit beta
 gi|71159296|sp|P0A989|DPO3B_ECOL6 RecName: Full=DNA polymerase III subunit beta
 gi|71159297|sp|P0A988|DPO3B_ECOLI RecName: Full=DNA polymerase III subunit beta
 gi|494833|pdb|2POL|A Chain A, Three-Dimensional Structure Of The Beta Subunit Of
           Escherichia Coli Dna Polymerase Iii Holoenzyme: A
           Sliding Dna Clamp
 gi|494834|pdb|2POL|B Chain B, Three-Dimensional Structure Of The Beta Subunit Of
           Escherichia Coli Dna Polymerase Iii Holoenzyme: A
           Sliding Dna Clamp
 gi|34809863|pdb|1MMI|A Chain A, E. Coli Dna Polymerase Beta Subunit
 gi|34809864|pdb|1MMI|B Chain B, E. Coli Dna Polymerase Beta Subunit
 gi|39654966|pdb|1UNN|A Chain A, Complex Of Beta-Clamp Processivity Factor And Little
           Finger Domain Of Poliv
 gi|39654967|pdb|1UNN|B Chain B, Complex Of Beta-Clamp Processivity Factor And Little
           Finger Domain Of Poliv
 gi|51247132|pdb|1OK7|A Chain A, A Conserved Protein Binding-Site On Bacterial Sliding
           Clamps
 gi|51247133|pdb|1OK7|B Chain B, A Conserved Protein Binding-Site On Bacterial Sliding
           Clamps
 gi|166235467|pdb|3BEP|A Chain A, Structure Of A Sliding Clamp On Dna
 gi|166235468|pdb|3BEP|B Chain B, Structure Of A Sliding Clamp On Dna
 gi|194709177|pdb|3D1E|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Ii Peptide
 gi|194709178|pdb|3D1E|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Ii Peptide
 gi|194709180|pdb|3D1F|A Chain A, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Iii Peptide
 gi|194709181|pdb|3D1F|B Chain B, Crystal Structure Of E. Coli Sliding Clamp (Beta) Bound To
           A Polymerase Iii Peptide
 gi|194709184|pdb|3D1G|A Chain A, Structure Of A Small Molecule Inhibitor Bound To A Dna
           Sliding Clamp
 gi|194709185|pdb|3D1G|B Chain B, Structure Of A Small Molecule Inhibitor Bound To A Dna
           Sliding Clamp
 gi|12518540|gb|AAG58898.1|AE005601_4 DNA polymerase III, beta-subunit [Escherichia coli O157:H7 str.
           EDL933]
 gi|26110872|gb|AAN83056.1|AE016769_171 DNA polymerase III, beta chain [Escherichia coli CFT073]
 gi|145761|gb|AAB59150.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|290549|gb|AAA62052.1| DNA polymerase III beta-subunit [Escherichia coli]
 gi|1790136|gb|AAC76724.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. MG1655]
 gi|13364111|dbj|BAB38059.1| DNA polymerase III beta-subunit [Escherichia coli O157:H7 str.
           Sakai]
 gi|73857492|gb|AAZ90199.1| DNA polymerase III beta subunit [Shigella sonnei Ss046]
 gi|81243378|gb|ABB64088.1| DNA polymerase III, beta-subunit [Shigella dysenteriae Sd197]
 gi|81247446|gb|ABB68154.1| DNA polymerase III beta-subunit [Shigella boydii Sb227]
 gi|85676343|dbj|BAE77593.1| DNA polymerase III, beta subunit [Escherichia coli str. K12 substr.
           W3110]
 gi|91074797|gb|ABE09678.1| DNA polymerase III, beta-subunit [Escherichia coli UTI89]
 gi|110345636|gb|ABG71873.1| DNA polymerase III, beta chain [Escherichia coli 536]
 gi|115515101|gb|ABJ03176.1| DNA polymerase III subunit beta [Escherichia coli APEC O1]
 gi|157068861|gb|ABV08116.1| DNA polymerase III, beta subunit [Escherichia coli HS]
 gi|157078703|gb|ABV18411.1| DNA polymerase III, beta subunit [Escherichia coli E24377A]
 gi|169752991|gb|ACA75690.1| DNA polymerase III, beta subunit [Escherichia coli ATCC 8739]
 gi|169891038|gb|ACB04745.1| DNA polymerase III, beta subunit [Escherichia coli str. K-12
           substr. DH10B]
 gi|170520206|gb|ACB18384.1| DNA polymerase III, beta subunit [Escherichia coli SMS-3-5]
 gi|187427319|gb|ACD06593.1| DNA polymerase III, beta subunit [Shigella boydii CDC 3083-94]
 gi|187771361|gb|EDU35205.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4196]
 gi|188016968|gb|EDU55090.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4113]
 gi|188487741|gb|EDU62844.1| DNA polymerase III, beta subunit [Escherichia coli 53638]
 gi|189002623|gb|EDU71609.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4076]
 gi|189359039|gb|EDU77458.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4401]
 gi|189364639|gb|EDU83058.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4486]
 gi|189369478|gb|EDU87894.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4501]
 gi|189378717|gb|EDU97133.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC508]
 gi|190904132|gb|EDV63843.1| DNA polymerase III, beta subunit [Escherichia coli B7A]
 gi|190909249|gb|EDV68835.1| DNA polymerase III, beta subunit [Escherichia coli F11]
 gi|192930502|gb|EDV83109.1| DNA polymerase III, beta subunit [Escherichia coli E22]
 gi|194413900|gb|EDX30178.1| DNA polymerase III, beta subunit [Escherichia coli B171]
 gi|194420778|gb|EDX36854.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1012]
 gi|194425455|gb|EDX41439.1| DNA polymerase III, beta subunit [Escherichia coli 101-1]
 gi|208727083|gb|EDZ76684.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4206]
 gi|208734494|gb|EDZ83181.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4045]
 gi|208740619|gb|EDZ88301.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4042]
 gi|209161837|gb|ACI39270.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           EC4115]
 gi|209754118|gb|ACI75366.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754120|gb|ACI75367.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754122|gb|ACI75368.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754124|gb|ACI75369.1| replication initiation protein DnaA [Escherichia coli]
 gi|209754126|gb|ACI75370.1| replication initiation protein DnaA [Escherichia coli]
 gi|209914437|dbj|BAG79511.1| DNA polymerase III beta subunit [Escherichia coli SE11]
 gi|217320369|gb|EEC28793.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           TW14588]
 gi|218354155|emb|CAV00755.1| DNA polymerase III, beta subunit [Escherichia coli 55989]
 gi|218358773|emb|CAQ91430.1| DNA polymerase III, beta subunit [Escherichia fergusonii ATCC
           35469]
 gi|218363035|emb|CAR00674.1| DNA polymerase III, beta subunit [Escherichia coli IAI1]
 gi|218367545|emb|CAR05330.1| DNA polymerase III, beta subunit [Escherichia coli S88]
 gi|218372536|emb|CAR20411.1| DNA polymerase III, beta subunit [Escherichia coli IAI39]
 gi|218429553|emb|CAR10376.1| DNA polymerase III, beta subunit [Escherichia coli ED1a]
 gi|218434444|emb|CAR15372.1| DNA polymerase III, beta subunit [Escherichia coli UMN026]
 gi|222035415|emb|CAP78160.1| DNA polymerase III subunit beta [Escherichia coli LF82]
 gi|226838883|gb|EEH70910.1| DNA polymerase III [Escherichia sp. 1_1_43]
 gi|226902765|gb|EEH89024.1| DNA polymerase III subunit beta [Escherichia sp. 3_2_53FAA]
 gi|227839200|gb|EEJ49666.1| DNA-directed DNA polymerase [Escherichia coli 83972]
 gi|238860831|gb|ACR62829.1| DNA polymerase III, beta subunit [Escherichia coli BW2952]
 gi|242379240|emb|CAQ34045.1| dnaN, subunit of DNA polymerase III, beta subunit and DNA
           polymerase III, holoenzyme [Escherichia coli BL21(DE3)]
 gi|253322481|gb|ACT27083.1| DNA polymerase III, beta subunit [Escherichia coli
           'BL21-Gold(DE3)pLysS AG']
 gi|253975553|gb|ACT41224.1| DNA polymerase III subunit beta [Escherichia coli B str. REL606]
 gi|253979709|gb|ACT45379.1| DNA polymerase III subunit beta [Escherichia coli BL21(DE3)]
 gi|254595104|gb|ACT74465.1| DNA polymerase III, beta subunit [Escherichia coli O157:H7 str.
           TW14359]
 gi|257756537|dbj|BAI28039.1| DNA polymerase III, beta subunit [Escherichia coli O26:H11 str.
           11368]
 gi|257761661|dbj|BAI33158.1| DNA polymerase III, beta subunit [Escherichia coli O103:H2 str.
           12009]
 gi|257766788|dbj|BAI38283.1| DNA polymerase III, beta subunit [Escherichia coli O111:H- str.
           11128]
 gi|260447281|gb|ACX37703.1| DNA polymerase III, beta subunit [Escherichia coli DH1]
 gi|281180755|dbj|BAI57085.1| DNA polymerase III beta subunit [Escherichia coli SE15]
 gi|290764993|gb|ADD58954.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
           CB9615]
 gi|291425632|gb|EFE98668.1| DNA polymerase III subunit beta [Escherichia coli FVEC1412]
 gi|291431205|gb|EFF04198.1| DNA polymerase III [Escherichia coli B185]
 gi|291468288|gb|EFF10783.1| DNA polymerase III [Escherichia coli B354]
 gi|294492870|gb|ADE91626.1| DNA polymerase III, beta subunit [Escherichia coli IHE3034]
 gi|298276918|gb|EFI18436.1| DNA polymerase III subunit beta [Escherichia coli FVEC1302]
 gi|299878456|gb|EFI86667.1| DNA polymerase III, beta subunit [Escherichia coli MS 196-1]
 gi|300300579|gb|EFJ56964.1| DNA polymerase III, beta subunit [Escherichia coli MS 185-1]
 gi|300306875|gb|EFJ61395.1| DNA polymerase III, beta subunit [Escherichia coli MS 200-1]
 gi|300316880|gb|EFJ66664.1| DNA polymerase III, beta subunit [Escherichia coli MS 175-1]
 gi|300360090|gb|EFJ75960.1| DNA polymerase III, beta subunit [Escherichia coli MS 198-1]
 gi|300398377|gb|EFJ81915.1| DNA polymerase III, beta subunit [Escherichia coli MS 69-1]
 gi|300404930|gb|EFJ88468.1| DNA polymerase III, beta subunit [Escherichia coli MS 84-1]
 gi|300408374|gb|EFJ91912.1| DNA polymerase III, beta subunit [Escherichia coli MS 45-1]
 gi|300415273|gb|EFJ98583.1| DNA polymerase III, beta subunit [Escherichia coli MS 115-1]
 gi|300418365|gb|EFK01676.1| DNA polymerase III, beta subunit [Escherichia coli MS 182-1]
 gi|300452875|gb|EFK16495.1| DNA polymerase III, beta subunit [Escherichia coli MS 116-1]
 gi|300454367|gb|EFK17860.1| DNA polymerase III, beta subunit [Escherichia coli MS 21-1]
 gi|300459918|gb|EFK23411.1| DNA polymerase III, beta subunit [Escherichia coli MS 187-1]
 gi|300523201|gb|EFK44270.1| DNA polymerase III, beta subunit [Escherichia coli MS 119-7]
 gi|300838804|gb|EFK66564.1| DNA polymerase III, beta subunit [Escherichia coli MS 124-1]
 gi|300848101|gb|EFK75861.1| DNA polymerase III, beta subunit [Escherichia coli MS 78-1]
 gi|301077314|gb|EFK92120.1| DNA polymerase III, beta subunit [Escherichia coli MS 146-1]
 gi|305850342|gb|EFM50799.1| DNA polymerase III subunit beta [Escherichia coli NC101]
 gi|306906913|gb|EFN37422.1| DNA polymerase III, beta subunit [Escherichia coli W]
 gi|307555841|gb|ADN48616.1| DNA polymerase III, beta-subunit [Escherichia coli ABU 83972]
 gi|307628777|gb|ADN73081.1| DNA polymerase III subunit beta [Escherichia coli UM146]
 gi|308120629|gb|EFO57891.1| DNA polymerase III, beta subunit [Escherichia coli MS 145-7]
 gi|308927756|gb|EFP73224.1| DNA polymerase III, beta subunit [Shigella dysenteriae 1617]
 gi|309704148|emb|CBJ03495.1| DNA polymerase III beta-subunit [Escherichia coli ETEC H10407]
 gi|310334384|gb|EFQ00589.1| DNA polymerase III, beta subunit [Escherichia coli 1827-70]
 gi|312948268|gb|ADR29095.1| DNA polymerase III subunit beta [Escherichia coli O83:H1 str. NRG
           857C]
 gi|315063007|gb|ADT77334.1| DNA polymerase III, beta subunit [Escherichia coli W]
 gi|315138285|dbj|BAJ45444.1| DNA polymerase III subunit beta [Escherichia coli DH1]
 gi|315254612|gb|EFU34580.1| DNA polymerase III, beta subunit [Escherichia coli MS 85-1]
 gi|315285494|gb|EFU44939.1| DNA polymerase III, beta subunit [Escherichia coli MS 110-3]
 gi|315292859|gb|EFU52211.1| DNA polymerase III, beta subunit [Escherichia coli MS 153-1]
 gi|315296899|gb|EFU56187.1| DNA polymerase III, beta subunit [Escherichia coli MS 16-3]
 gi|315618593|gb|EFU99179.1| DNA polymerase III, beta subunit [Escherichia coli 3431]
 gi|320174825|gb|EFW49948.1| DNA polymerase III beta subunit [Shigella dysenteriae CDC 74-1112]
 gi|320180042|gb|EFW54984.1| DNA polymerase III beta subunit [Shigella boydii ATCC 9905]
 gi|320185534|gb|EFW60300.1| DNA polymerase III beta subunit [Shigella flexneri CDC 796-83]
 gi|320191199|gb|EFW65849.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
           EC1212]
 gi|320193753|gb|EFW68386.1| DNA polymerase III beta subunit [Escherichia coli WV_060327]
 gi|320201271|gb|EFW75852.1| DNA polymerase III beta subunit [Escherichia coli EC4100B]
 gi|320639426|gb|EFX09041.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           G5101]
 gi|320644869|gb|EFX13905.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str.
           493-89]
 gi|320650133|gb|EFX18629.1| DNA polymerase III subunit beta [Escherichia coli O157:H- str. H
           2687]
 gi|320655481|gb|EFX23416.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str.
           3256-97 TW 07815]
 gi|320661107|gb|EFX28543.1| DNA polymerase III subunit beta [Escherichia coli O55:H7 str. USDA
           5905]
 gi|320666233|gb|EFX33239.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           LSU-61]
 gi|323155377|gb|EFZ41560.1| DNA polymerase III, beta subunit [Escherichia coli EPECa14]
 gi|323161047|gb|EFZ46966.1| DNA polymerase III, beta subunit [Escherichia coli E128010]
 gi|323164687|gb|EFZ50482.1| DNA polymerase III, beta subunit [Shigella sonnei 53G]
 gi|323173319|gb|EFZ58948.1| DNA polymerase III, beta subunit [Escherichia coli LT-68]
 gi|323177713|gb|EFZ63297.1| DNA polymerase III, beta subunit [Escherichia coli 1180]
 gi|323182496|gb|EFZ67900.1| DNA polymerase III, beta subunit [Escherichia coli 1357]
 gi|323189564|gb|EFZ74844.1| DNA polymerase III, beta subunit [Escherichia coli RN587/1]
 gi|323376399|gb|ADX48667.1| DNA polymerase III, beta subunit [Escherichia coli KO11]
 gi|323934948|gb|EGB31326.1| DNA polymerase III [Escherichia coli E1520]
 gi|323949944|gb|EGB45828.1| DNA polymerase III [Escherichia coli H252]
 gi|323955005|gb|EGB50783.1| DNA polymerase III [Escherichia coli H263]
 gi|323959766|gb|EGB55416.1| DNA polymerase III [Escherichia coli H489]
 gi|323965762|gb|EGB61213.1| DNA polymerase III [Escherichia coli M863]
 gi|323971178|gb|EGB66424.1| DNA polymerase III [Escherichia coli TA007]
 gi|323975232|gb|EGB70336.1| DNA polymerase III [Escherichia coli TW10509]
 gi|324008037|gb|EGB77256.1| DNA polymerase III, beta subunit [Escherichia coli MS 57-2]
 gi|324012738|gb|EGB81957.1| DNA polymerase III, beta subunit [Escherichia coli MS 60-1]
 gi|324018431|gb|EGB87650.1| DNA polymerase III, beta subunit [Escherichia coli MS 117-3]
 gi|324115947|gb|EGC09873.1| DNA polymerase III [Escherichia coli E1167]
 gi|326337250|gb|EGD61085.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
           1044]
 gi|326341621|gb|EGD65410.1| DNA polymerase III beta subunit [Escherichia coli O157:H7 str.
           1125]
 gi|327250844|gb|EGE62546.1| DNA polymerase III, beta subunit [Escherichia coli STEC_7v]
 gi|331036719|gb|EGI08945.1| DNA polymerase III, beta subunit [Escherichia coli H736]
 gi|331042025|gb|EGI14169.1| DNA polymerase III, beta subunit [Escherichia coli M605]
 gi|331047376|gb|EGI19454.1| DNA polymerase III, beta subunit [Escherichia coli M718]
 gi|331053258|gb|EGI25291.1| DNA polymerase III, beta subunit [Escherichia coli TA206]
 gi|331057861|gb|EGI29847.1| DNA polymerase III, beta subunit [Escherichia coli TA143]
 gi|331062607|gb|EGI34527.1| DNA polymerase III, beta subunit [Escherichia coli TA271]
 gi|331067636|gb|EGI39038.1| DNA polymerase III, beta subunit [Escherichia coli TA280]
 gi|331072971|gb|EGI44296.1| DNA polymerase III, beta subunit [Escherichia coli H591]
 gi|331077796|gb|EGI49008.1| DNA polymerase III, beta subunit [Escherichia coli H299]
 gi|332084052|gb|EGI89259.1| DNA polymerase III, beta subunit [Shigella dysenteriae 155-74]
 gi|332084891|gb|EGI90074.1| DNA polymerase III, beta subunit [Shigella boydii 5216-82]
 gi|332089554|gb|EGI94658.1| DNA polymerase III, beta subunit [Shigella boydii 3594-74]
 gi|332104864|gb|EGJ08210.1| DNA polymerase III subunit beta [Shigella sp. D9]
 gi|332345692|gb|AEE59026.1| DNA polymerase III, beta subunit DnaN [Escherichia coli UMNK88]
          Length = 366

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|215489041|ref|YP_002331472.1| DNA polymerase III subunit beta [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312967889|ref|ZP_07782101.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75]
 gi|215267113|emb|CAS11560.1| DNA polymerase III, beta subunit [Escherichia coli O127:H6 str.
           E2348/69]
 gi|312287450|gb|EFR15358.1| DNA polymerase III, beta subunit [Escherichia coli 2362-75]
          Length = 366

 Score =  398 bits (1022), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPMRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|209551896|ref|YP_002283813.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv.
           trifolii WSM2304]
 gi|209537652|gb|ACI57587.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
           trifolii WSM2304]
          Length = 372

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 186/387 (48%), Positives = 262/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     ++ G+ + +  G S F LQ  PES+FP 
Sbjct: 61  VEQSGATTVPAHLLYDIVRKLPDGSEVLLATSSDGGS-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   ++ +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + + +V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVTVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|325499508|gb|EGC97367.1| DNA polymerase III subunit beta [Escherichia fergusonii ECD227]
          Length = 366

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGTTTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|324111598|gb|EGC05579.1| DNA polymerase III [Escherichia fergusonii B253]
          Length = 366

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|193069140|ref|ZP_03050097.1| DNA polymerase III, beta subunit [Escherichia coli E110019]
 gi|192957464|gb|EDV87910.1| DNA polymerase III, beta subunit [Escherichia coli E110019]
          Length = 366

 Score =  397 bits (1021), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPISQSLP-SHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|294638326|ref|ZP_06716579.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685]
 gi|291088579|gb|EFE21140.1| DNA polymerase III, beta subunit [Edwardsiella tarda ATCC 23685]
          Length = 366

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +++ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +P S
Sbjct: 1   MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L DGA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   ++ +++ +  + +  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPHHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + VV  L  + SSV I
Sbjct: 295 NNPEQEEAEELLDVNYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDAASQA---------AVYVVMPMRL 366


>gi|146337177|ref|YP_001202225.1| DNA polymerase III subunit beta [Bradyrhizobium sp. ORS278]
 gi|146189983|emb|CAL73975.1| DNA polymerase III, beta-subunit [Bradyrhizobium sp. ORS278]
          Length = 372

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 168/387 (43%), Positives = 240/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L ++A+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  ++F + +  +K+L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   +  A+MP +IVPRK VGE+ R++   DS +K+ LS+ +I   +  + ++
Sbjct: 180 HRLAQVDLPQPSGAAEMPGVIVPRKTVGEVQRLIEDNDSEIKIELSQGKIRFTLGQVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKADFAAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I  +       V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D           NA YVLMPMR+
Sbjct: 355 IQDRDN---------RNALYVLMPMRV 372


>gi|238917985|ref|YP_002931499.1| DNA polymerase III subunit beta [Edwardsiella ictaluri 93-146]
 gi|269137360|ref|YP_003294060.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202]
 gi|238867553|gb|ACR67264.1| DNA polymerase III, beta subunit, putative [Edwardsiella ictaluri
           93-146]
 gi|267983020|gb|ACY82849.1| DNA polymerase III, beta subunit [Edwardsiella tarda EIB202]
 gi|304557461|gb|ADM40125.1| DNA polymerase III beta subunit [Edwardsiella tarda FL6-60]
          Length = 366

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  VER  +++ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +P  
Sbjct: 1   MKFIVEREHLIKPLQQVSSPLGGRPTLPILGNLLLQVEDGHLSLTGTDLEMEMVARVPLV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L DGA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFLDICRGLPDGAEISVALD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   ++ +++ +  + +  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRLLDGGETPLRLQIGSNNLRAHVGGFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDELKQAFARAAILSNEKFRGVRLHVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + VV  L  + SSV I
Sbjct: 295 NNPEQEEAEELLDVDYPGSDLEIGFNVSYVLDVLNALKC-----ERVVMMLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDAASQA---------AVYVVMPMRL 366


>gi|56459114|ref|YP_154395.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR]
 gi|56178124|gb|AAV80846.1| DNA polymerase sliding clamp subunit [Idiomarina loihiensis L2TR]
          Length = 367

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 136/386 (35%), Positives = 219/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   L+ L      +ER++T+P+  ++LLQ ++G L++  +  E+E+  A+P  
Sbjct: 1   MKFSINRDAFLKPLQVVSGAVERRHTLPILSNLLLQVDNGQLKLTGTDLEVELVSAVPLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+  ++TV A  L DIVR L +G+ I F  + +  T   +  G S F L +    +FP
Sbjct: 61  SADMDAAVTVPAKKLLDIVRSLPEGSTIEFTSQEDSAT---VKSGRSKFKLSTLSSDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +         +VLK+L+ +THF+MA +++RYYLNG+ F    ++  L +VATDGH
Sbjct: 118 NIDDWKSDIHLVTEQAVLKDLMLKTHFSMANQDVRYYLNGMLFET--DNGMLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I         +IVPRK V E+LR+L   D  V VS+  + I +    L  + 
Sbjct: 176 RLAMSTCAIDQPGLAQRQVIVPRKGVVELLRLLGDDDQEVSVSIGNNHIRVETPELVFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   LRQ+  R SI+S+ + + V+L+LSS +LC+T 
Sbjct: 236 KLVDGRFPDYRRVLPSGGDKVIVAHRDALRQSFGRASILSNEKFRGVRLNLSSGELCITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A E + V Y    ++I FN  YLL++++NI      D++V F L  SNSS  I
Sbjct: 296 TNPEQEQAEEVIEVDYQGDDLEIGFNVSYLLDVLNNID-----DEQVSFTLSDSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  +S           YV+MPMR+
Sbjct: 351 EPQHDES---------CCYVIMPMRL 367


>gi|92115635|ref|YP_575364.1| DNA polymerase III subunit beta [Nitrobacter hamburgensis X14]
 gi|91798529|gb|ABE60904.1| DNA polymerase III, beta subunit [Nitrobacter hamburgensis X14]
          Length = 372

 Score =  397 bits (1020), Expect = e-108,   Method: Composition-based stats.
 Identities = 165/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLKATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+ YDIVRKL DGAQI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATGGATTVPAHIFYDIVRKLPDGAQIVLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  +SF+LA++ +K L++RT FA++TEE RYYLNGI+ H     ++  L  VATDG
Sbjct: 120 LAAGEMTHSFKLAAADIKRLIDRTQFAISTEETRYYLNGIYLHSAGSAKNATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +I+PRK VGE+ R++   ++ V + LS+ +I   I ++ ++
Sbjct: 180 HRLAQVDLALPNGAEGMPGVIIPRKTVGEVQRLIEDNEAEVGIELSQGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASEPLDIGFNSRYLLDIAAQIEG-----EGAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  KD            A YVLMPMR+
Sbjct: 355 VHDKD---------SKGALYVLMPMRV 372


>gi|209883689|ref|YP_002287546.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5]
 gi|209871885|gb|ACI91681.1| DNA polymerase III, beta subunit [Oligotropha carboxidovorans OM5]
          Length = 372

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 166/387 (42%), Positives = 242/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLIRAENAKLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  IATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
               E  +SF L ++ +K L++RT FA++TEE RYYLNGI+ H      +  L AVATDG
Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHAAGSAAEQTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +    A MP +IVPRK VGE+ R++   ++ + + LS+++I   + ++ ++
Sbjct: 180 HRLAQFDLPLPKSAAGMPGVIVPRKTVGEVQRLIEDTEAEIAIELSQAKIRFTLANVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +N+KEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNEKELVVDKRDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y   P+DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VVNPDSGSATEELEVEYASDPLDIGFNSRYLLDIAAQIQG-----EAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ K            +A YVLMPMR+
Sbjct: 355 VQDK---------ANRDALYVLMPMRV 372


>gi|116250102|ref|YP_765940.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv. viciae
           3841]
 gi|115254750|emb|CAK05824.1| putative DNA polymerase III, beta chain [Rhizobium leguminosarum
           bv. viciae 3841]
          Length = 372

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 187/387 (48%), Positives = 261/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     ++ G+ + +  G S F LQ  PES+FP 
Sbjct: 61  VEQPGATTVPAHLLYDIVRKLSDGSEVLLATSSDGGS-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E +  LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|227824176|ref|YP_002828149.1| DNA polymerase III subunit beta [Sinorhizobium fredii NGR234]
 gi|227343178|gb|ACP27396.1| DNA polymerase III, beta subunit [Sinorhizobium fredii NGR234]
          Length = 372

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 182/387 (47%), Positives = 255/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEV-RLATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                + +SF L ++ LK L++RT FA++TEE RYYLNGIF H  E   +LKL AVATDG
Sbjct: 120 LTAGSFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVENKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+++  A    MP II+PRK V E+ ++L + D  V   +S+++I L I S+ M+
Sbjct: 180 HRLARADIEAPAGSEGMPGIIIPRKTVSELQKLLDTPDVVVTAEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPAGNDKELRVDCQSFAQAVDRVSTISSERGRAVKLALTDGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A+E + V Y   P++I FN KYLL+I   ++ +     E VF L    S   
Sbjct: 300 VNNPDSGSAMEELPVGYENDPLEIGFNAKYLLDITAQLTGN-----EAVFMLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372


>gi|241207273|ref|YP_002978369.1| DNA polymerase III subunit beta [Rhizobium leguminosarum bv.
           trifolii WSM1325]
 gi|240861163|gb|ACS58830.1| DNA polymerase III, beta subunit [Rhizobium leguminosarum bv.
           trifolii WSM1325]
          Length = 372

 Score =  396 bits (1019), Expect = e-108,   Method: Composition-based stats.
 Identities = 187/387 (48%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQKLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G  + +  G S F LQ  PES+FP 
Sbjct: 61  VEQPGATTVPAHLLYDIVRKLSDGSEVLLATSPDGGA-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH  E +  LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGQLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEVMVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|197262814|ref|ZP_03162888.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
 gi|197241069|gb|EDY23689.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA23]
          Length = 366

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          NA YV+MPMR+
Sbjct: 350 EDA---------ASQNAAYVVMPMRL 366


>gi|170766918|ref|ZP_02901371.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627]
 gi|170124356|gb|EDS93287.1| DNA polymerase III, beta subunit [Escherichia albertii TW07627]
          Length = 366

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|156936081|ref|YP_001439997.1| DNA polymerase III subunit beta [Cronobacter sakazakii ATCC
           BAA-894]
 gi|156534335|gb|ABU79161.1| hypothetical protein ESA_03975 [Cronobacter sakazakii ATCC BAA-894]
          Length = 366

 Score =  396 bits (1018), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +S G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    EDL+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +   +    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPVGQPLPN-HSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASSSAAYVVMPMRL 366


>gi|242237462|ref|YP_002985643.1| DNA polymerase III subunit beta [Dickeya dadantii Ech703]
 gi|242129519|gb|ACS83821.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech703]
          Length = 366

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +   +FEL  + LK L+E T F+MA +++RYYLNG+ F  + + L+   VATDGH
Sbjct: 118 NLDDWQSEVAFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGDGLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +   +    S+IVPRK V E++R+L   ++ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPVGQPLP-SHSVIVPRKGVMELVRLLDGGETPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFARAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L    SSV +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EDVRMLLADPASSVQL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDCASQA---------AAYVVMPMRL 366


>gi|114704370|ref|ZP_01437278.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506]
 gi|114539155|gb|EAU42275.1| DNA polymerase III subunit beta [Fulvimarina pelagi HTCC2506]
          Length = 374

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 173/389 (44%), Positives = 240/389 (61%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ERS++L+ L H  R++ER+NTIP+  +VLL+A    L +KA+  +IEIT  + A 
Sbjct: 1   MRIIIERSNLLKSLAHVHRVVERRNTIPILSNVLLRAKAETLGLKATDLDIEITEEVAAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+ TV AHLLYDIVRKL DGA++     N  GT++ +S G SNF LQ  PE++FP 
Sbjct: 61  GEQEGATTVPAHLLYDIVRKLPDGAEVKLVL-NSEGTQMTVSAGRSNFRLQCLPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + F + +  L  L+ERT FA++TEE RYYLNGI+ H    +  L L AVATDG
Sbjct: 120 ITAGELSHGFTMEAGALARLIERTQFAISTEETRYYLNGIYLHTIDADGTLMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236
           HRLA AE+   +    MP IIVPRK VGEI ++L+    D  + V LSES+I   I  + 
Sbjct: 180 HRLARAEMTAPSGSEGMPGIIVPRKTVGEIQKLLADCEDDDEIAVDLSESKIRFKIGRVV 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           M+ +LIDG FP+YQ VIP +NDKEL ++  +   AVDRVS +SS R +AVKL+L+  +L 
Sbjct: 240 MTSKLIDGTFPDYQRVIPQNNDKELTLDRASFSSAVDRVSTISSERGRAVKLTLADSQLT 299

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +TV++PD G A E + V Y    ++I FN +YLL++   +S      +E +F L    S 
Sbjct: 300 LTVNSPDAGTATEELAVGYESEDLEIGFNARYLLDVTSQLSG-----EEAMFVLADPGSP 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+              +  YVLMPMR+
Sbjct: 355 TLIKD---------GGDTSTLYVLMPMRV 374


>gi|323462780|pdb|2XUR|A Chain A, The G157c Mutation In The Escherichia Coli Sliding Clamp
           Specifically Affects Initiation Of Replication
 gi|323462781|pdb|2XUR|B Chain B, The G157c Mutation In The Escherichia Coli Sliding Clamp
           Specifically Affects Initiation Of Replication
          Length = 373

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 8   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 67

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 68  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 124

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLN + F    E+L+   VATDGH
Sbjct: 125 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNCMLFETEGEELR--TVATDGH 182

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 183 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 241

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 242 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 301

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 302 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 356

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 357 EDA---------ASQSAAYVVMPMRL 373


>gi|30065009|ref|NP_839180.1| DNA polymerase III subunit beta [Shigella flexneri 2a str. 2457T]
 gi|56480410|ref|NP_709499.2| DNA polymerase III subunit beta [Shigella flexneri 2a str. 301]
 gi|110807609|ref|YP_691129.1| DNA polymerase III subunit beta [Shigella flexneri 5 str. 8401]
 gi|30043270|gb|AAP18991.1| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 2457T]
 gi|56383961|gb|AAN45206.2| DNA polymerase III, beta-subunit [Shigella flexneri 2a str. 301]
 gi|110617157|gb|ABF05824.1| DNA polymerase III, beta-subunit [Shigella flexneri 5 str. 8401]
 gi|281603072|gb|ADA76056.1| DNA polymerase III, beta-subunit [Shigella flexneri 2002017]
 gi|313647709|gb|EFS12157.1| DNA polymerase III, beta subunit [Shigella flexneri 2a str. 2457T]
 gi|332750522|gb|EGJ80931.1| DNA polymerase III, beta subunit [Shigella flexneri K-671]
 gi|332750693|gb|EGJ81101.1| DNA polymerase III, beta subunit [Shigella flexneri 4343-70]
 gi|332751746|gb|EGJ82144.1| DNA polymerase III, beta subunit [Shigella flexneri 2747-71]
 gi|332764072|gb|EGJ94309.1| DNA polymerase III, beta subunit [Shigella flexneri 2930-71]
 gi|332996041|gb|EGK15668.1| DNA polymerase III, beta subunit [Shigella flexneri VA-6]
 gi|332997108|gb|EGK16724.1| DNA polymerase III, beta subunit [Shigella flexneri K-218]
 gi|333013256|gb|EGK32629.1| DNA polymerase III, beta subunit [Shigella flexneri K-304]
          Length = 366

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|170748657|ref|YP_001754917.1| DNA polymerase III subunit beta [Methylobacterium radiotolerans JCM
           2831]
 gi|170655179|gb|ACB24234.1| DNA polymerase III, beta subunit [Methylobacterium radiotolerans
           JCM 2831]
          Length = 373

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/388 (43%), Positives = 238/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+A    L+++A+  +IE+T ++PA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRAEGSGLQLRATDLDIEVTESVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL DGAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VADAGATTVPAHVIYDIVRKLPDGAQVSLETGGESG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + FE+A++ LK L+E+T FA++TEE RYYLNGI+ H    E    + AVATDG
Sbjct: 120 LAAGEMPHGFEIAAADLKRLIEKTQFAISTEETRYYLNGIYLHTLETENGPAMRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237
           HRLA  E+        MP +IVPRKAV EI ++L     +V V LS ++I L     L++
Sbjct: 180 HRLARVEIPAPQGSVGMPGVIVPRKAVAEIQKLLDDGGETVAVDLSPAKIRLRFAGGLTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP +NDK L V      +AVDRVS +SS R +AVKL L+  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPANNDKRLTVERDAFAKAVDRVSTISSERGRAVKLGLAEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVNNPDSGSATEELDVDYEAAGLDIGFNARYLLDITAQLEG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ ++            A YVLMPMR+
Sbjct: 355 LIQDREGAP---------ALYVLMPMRV 373


>gi|222084599|ref|YP_002543128.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84]
 gi|221722047|gb|ACM25203.1| DNA polymerase III, beta subunit [Agrobacterium radiobacter K84]
          Length = 372

 Score =  396 bits (1017), Expect = e-108,   Method: Composition-based stats.
 Identities = 187/387 (48%), Positives = 257/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A    L++KA+  ++EIT A PA+
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGANLDMKATDLDLEITEATPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  G  + ++ G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEVL-LATNPDGGSMTVASGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   +E DLKL AVATDG
Sbjct: 120 LTAGSFSHSFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESEGDLKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V   +    MP II+PRK VGE+ +++ S D  V V +S+++I   I S+ M+
Sbjct: 180 HRLARADVSAPSGSEGMPGIIIPRKTVGELQKLVDSPDVIVTVEVSDAKIRTTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP +NDKE+RV+C +  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTNNDKEMRVDCQSFAQAVDRVSTISSERGRAVKLALSDGQLLLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      D  +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----DAAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|332997867|gb|EGK17475.1| DNA polymerase III, beta subunit [Shigella flexneri K-272]
 gi|333013662|gb|EGK33027.1| DNA polymerase III, beta subunit [Shigella flexneri K-227]
          Length = 366

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNLLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|16762488|ref|NP_458105.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. CT18]
 gi|29143976|ref|NP_807318.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56415710|ref|YP_152785.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62182325|ref|YP_218742.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|161505632|ref|YP_001572744.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:-- str. RSK2980]
 gi|161616955|ref|YP_001590920.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|167548873|ref|ZP_02342632.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|168233392|ref|ZP_02658450.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|168260378|ref|ZP_02682351.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|168464832|ref|ZP_02698724.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|168818303|ref|ZP_02830303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|194471413|ref|ZP_03077397.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|197251713|ref|YP_002148775.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197364638|ref|YP_002144275.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|198245644|ref|YP_002217787.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204928586|ref|ZP_03219785.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205354576|ref|YP_002228377.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|207859063|ref|YP_002245714.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|213648785|ref|ZP_03378838.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. J185]
 gi|213865135|ref|ZP_03387254.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. M223]
 gi|224585636|ref|YP_002639435.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|238913090|ref|ZP_04656927.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Tennessee str. CDC07-0191]
 gi|289826404|ref|ZP_06545516.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-3139]
 gi|25288590|pir||AB0958 DNA polymerase III beta-chain [imported] - Salmonella enterica
           subsp. enterica serovar Typhi (strain CT18)
 gi|16504793|emb|CAD03158.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhi]
 gi|29139612|gb|AAO71178.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhi str. Ty2]
 gi|56129967|gb|AAV79473.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. ATCC 9150]
 gi|62129958|gb|AAX67661.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. SC-B67]
 gi|160866979|gb|ABX23602.1| hypothetical protein SARI_03808 [Salmonella enterica subsp.
           arizonae serovar 62:z4,z23:--]
 gi|161366319|gb|ABX70087.1| hypothetical protein SPAB_04776 [Salmonella enterica subsp.
           enterica serovar Paratyphi B str. SPB7]
 gi|194457777|gb|EDX46616.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CVM29188]
 gi|195632425|gb|EDX50909.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL317]
 gi|197096115|emb|CAR61711.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi A str. AKU_12601]
 gi|197215416|gb|ACH52813.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Agona str. SL483]
 gi|197940160|gb|ACH77493.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Dublin str. CT_02021853]
 gi|204322019|gb|EDZ07217.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Javiana str. GA_MM04042433]
 gi|205274357|emb|CAR39382.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 287/91]
 gi|205325570|gb|EDZ13409.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul str. SARA29]
 gi|205332539|gb|EDZ19303.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Kentucky str. CDC 191]
 gi|205344390|gb|EDZ31154.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. HI_N05-537]
 gi|205350419|gb|EDZ37050.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Hadar str. RI_05P066]
 gi|206710866|emb|CAR35230.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Enteritidis str. P125109]
 gi|224470164|gb|ACN47994.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Paratyphi C strain RKS4594]
 gi|320088258|emb|CBY98020.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
           enterica serovar Weltevreden str. 2007-60-3289-1]
 gi|322617250|gb|EFY14155.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315996572]
 gi|322619062|gb|EFY15948.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-1]
 gi|322625129|gb|EFY21957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-3]
 gi|322630180|gb|EFY26951.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 495297-4]
 gi|322634394|gb|EFY31128.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-1]
 gi|322635279|gb|EFY31994.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 515920-2]
 gi|322642897|gb|EFY39481.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 531954]
 gi|322647623|gb|EFY44110.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. NC_MB110209-0054]
 gi|322650571|gb|EFY46978.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. OH_2009072675]
 gi|322656403|gb|EFY52695.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. CASC_09SCPH15965]
 gi|322661583|gb|EFY57806.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 19N]
 gi|322661664|gb|EFY57883.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 81038-01]
 gi|322668222|gb|EFY64380.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MD_MDA09249507]
 gi|322672849|gb|EFY68957.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 414877]
 gi|322674970|gb|EFY71056.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 366867]
 gi|322683660|gb|EFY79673.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 413180]
 gi|322687736|gb|EFY83705.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 446600]
 gi|322716816|gb|EFZ08387.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Choleraesuis str. A50]
 gi|323192049|gb|EFZ77284.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609458-1]
 gi|323200531|gb|EFZ85609.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556150-1]
 gi|323204957|gb|EFZ89942.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 609460]
 gi|323206700|gb|EFZ91657.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 507440-20]
 gi|323211772|gb|EFZ96605.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 556152]
 gi|323218634|gb|EGA03341.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB101509-0077]
 gi|323220035|gb|EGA04505.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB102109-0047]
 gi|323224805|gb|EGA09070.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB110209-0055]
 gi|323232486|gb|EGA16588.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. MB111609-0052]
 gi|323235261|gb|EGA19346.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009083312]
 gi|323241049|gb|EGA25086.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 2009085258]
 gi|323241401|gb|EGA25433.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. 315731156]
 gi|323248632|gb|EGA32562.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2009159199]
 gi|323252069|gb|EGA35929.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008282]
 gi|323258627|gb|EGA42290.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008283]
 gi|323262342|gb|EGA45900.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008284]
 gi|323268178|gb|EGA51654.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008285]
 gi|323270592|gb|EGA54037.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Montevideo str. IA_2010008287]
 gi|326625573|gb|EGE31918.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Dublin str. 3246]
 gi|326629712|gb|EGE36055.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Gallinarum str. 9]
          Length = 366

 Score =  395 bits (1016), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|271498580|ref|YP_003331605.1| DNA polymerase III subunit beta [Dickeya dadantii Ech586]
 gi|270342135|gb|ACZ74900.1| DNA polymerase III, beta subunit [Dickeya dadantii Ech586]
          Length = 366

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+IS   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L  S SSV +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EEVRMLLTDSVSSVQL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDAASQA---------AAYVVMPMRL 366


>gi|163757766|ref|ZP_02164855.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43]
 gi|162285268|gb|EDQ35550.1| DNA polymerase III subunit beta [Hoeflea phototrophica DFL-43]
          Length = 372

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 181/387 (46%), Positives = 253/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLL+A    L++KA+  ++EIT A PA 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLKAEGATLDMKATDLDLEITEATPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS TV AHLLYDIVRKL DG+++     N  G  + ++ G S F LQ  PES+FP 
Sbjct: 61  IEQAGSTTVPAHLLYDIVRKLSDGSEV-MLATNPDGASMTVASGRSKFTLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + ++F L ++ LK L++RT FA++TEE RYYLNGIF H   +E  LKL AVATDG
Sbjct: 120 LTAGAFSHTFRLPATELKMLIDRTQFAISTEETRYYLNGIFVHTIESEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGEI +++ + D +V V +S+++I   I S+ M+
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGEIQKLVDNPDLTVTVEVSDAKIRFTIGSVVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL V+C    QAVDRVS +SS R +AVKL+++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKELTVDCQTFAQAVDRVSTISSERGRAVKLAIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+  P++I FN KYLL+I + +S  +      VF L    S   
Sbjct: 300 VNNPDSGSATEELAVGYDRDPIEIGFNAKYLLDITNQLSGTD-----AVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372


>gi|260595831|ref|YP_003208402.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032]
 gi|260215008|emb|CBA26670.1| DNA polymerase III subunit beta [Cronobacter turicensis z3032]
          Length = 366

 Score =  395 bits (1015), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +S G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLD---GDRMRVSSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    EDL+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +   +    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPVGQPLPN-HSVIVPRKGVLELMRMLDGGDAPLRIQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASSSAAYVVMPMRL 366


>gi|75674201|ref|YP_316622.1| DNA polymerase III subunit beta [Nitrobacter winogradskyi Nb-255]
 gi|74419071|gb|ABA03270.1| DNA polymerase III, beta subunit [Nitrobacter winogradskyi Nb-255]
          Length = 372

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 162/387 (41%), Positives = 236/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDI+RKL DGAQI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TGTVGSTTVPAHMFYDIIRKLPDGAQIVLEGDGDRSV-LTIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  +SF LA++ LK L++RT FA++TEE RYYLNGI+ H      +  L  VATDG
Sbjct: 120 LAAGEMTHSFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGTANNATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +I+PRK VGE+ R++   ++ + + LS+ +I   + ++ ++
Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTLGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +D            A YVLMPMR+
Sbjct: 355 VHDRD---------SRGALYVLMPMRV 372


>gi|16767122|ref|NP_462737.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|167992431|ref|ZP_02573529.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|168242057|ref|ZP_02666989.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|194444384|ref|YP_002043087.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194449346|ref|YP_002047870.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|200387477|ref|ZP_03214089.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|3915668|sp|P26464|DPO3B_SALTY RecName: Full=DNA polymerase III subunit beta
 gi|2653647|gb|AAB87631.1| DNA polymerase III beta clamp subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|16422411|gb|AAL22696.1| DNA polymerase III, beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. LT2]
 gi|194403047|gb|ACF63269.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Newport str. SL254]
 gi|194407650|gb|ACF67869.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL476]
 gi|199604575|gb|EDZ03120.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Virchow str. SL491]
 gi|205329442|gb|EDZ16206.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar 4,[5],12:i:- str. CVM23701]
 gi|205338833|gb|EDZ25597.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SL486]
 gi|261248978|emb|CBG26835.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. D23580]
 gi|267996123|gb|ACY91008.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 14028S]
 gi|301160370|emb|CBW19895.1| DNA polymerase III beta-subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. SL1344]
 gi|312914967|dbj|BAJ38941.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. T000240]
 gi|321225555|gb|EFX50610.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium str. TN061786]
 gi|323132198|gb|ADX19628.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. 4/74]
 gi|332990687|gb|AEF09670.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhimurium str. UK-1]
          Length = 366

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|251787654|ref|YP_003002375.1| DNA polymerase III subunit beta [Dickeya zeae Ech1591]
 gi|247536275|gb|ACT04896.1| DNA polymerase III, beta subunit [Dickeya zeae Ech1591]
          Length = 366

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEITVTLE---GDRMLVRSGRSRFSLSTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETGGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L  S SSV +
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EEVRMLLTDSVSSVQL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDAASQA---------AAYVVMPMRL 366


>gi|307133246|ref|YP_003885262.1| DNA polymerase III, subunit beta [Dickeya dadantii 3937]
 gi|306530775|gb|ADN00706.1| DNA polymerase III, beta subunit [Dickeya dadantii 3937]
          Length = 366

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVSEGRLSLTGTDLEMEMVAHLALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L DGA+IS   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPDGAEISVTLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F  + E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETSGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  LRQA  R +I+S+ + + V+L L+ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLRQAFSRAAILSNEKFRGVRLYLNQNQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVEYGGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDAASQA---------AAYVVMPMRL 366


>gi|91974484|ref|YP_567143.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB5]
 gi|91680940|gb|ABE37242.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris BisB5]
          Length = 372

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 238/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+   +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAQLALKATDLDLEVIETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLESDGDRSV-LAIRAGRSRFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  +SF LA+S +K L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGEMSHSFSLAASDVKRLIDRTQFAISTEETRYYLNGIYLHTAGSAKAATLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   A  + MP +IVPRK VGE+ R++   D+ + + LS  +I   I ++ ++
Sbjct: 180 HRLAQVDLAQPAGASGMPGVIVPRKTVGEVQRLIEDNDAEIAIELSAGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+      AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKEFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I  +       V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D           NA YVLMPMR+
Sbjct: 355 IQDRD---------TKNALYVLMPMRV 372


>gi|168235477|ref|ZP_02660535.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
 gi|194738233|ref|YP_002116781.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|194713735|gb|ACF92956.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. CVM19633]
 gi|197291529|gb|EDY30881.1| DNA polymerase III, beta subunit [Salmonella enterica subsp.
           enterica serovar Schwarzengrund str. SL480]
          Length = 366

 Score =  394 bits (1014), Expect = e-108,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYGGMEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|325291735|ref|YP_004277599.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3]
 gi|325059588|gb|ADY63279.1| DNA polymerase III beta subunit [Agrobacterium sp. H13-3]
          Length = 378

 Score =  394 bits (1014), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/387 (45%), Positives = 259/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PA 
Sbjct: 7   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLY+IVRKL DG+++     N  G+ + ++ G S F LQ  PE++FP 
Sbjct: 67  VEQAGATTVPAHLLYEIVRKLPDGSEVL-LATNPDGSTMTVASGRSKFSLQCLPETDFPD 125

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH   +  DLKL AVATDG
Sbjct: 126 LTAGTFSHTFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGDLKLRAVATDG 185

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ ++
Sbjct: 186 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELDVTVEVSDAKIRLTIGSVVLT 245

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+C    +AVDRVS +SS R +AVKL+L++ +L +T
Sbjct: 246 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTNGQLTLT 305

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      ++ +F L  + S   
Sbjct: 306 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 360

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 361 VRDTAGD---------DALYVLMPMRV 378


>gi|188579289|ref|YP_001922734.1| DNA polymerase III subunit beta [Methylobacterium populi BJ001]
 gi|179342787|gb|ACB78199.1| DNA polymerase III, beta subunit [Methylobacterium populi BJ001]
          Length = 373

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/388 (44%), Positives = 238/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+  D  L++KA+  +IE+T  + A 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGDNGLQLKATDLDIEVTETVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               E  +SF + +S LK L+E+T FA++TEE RYYLNGI+FH  E    LKL AVATDG
Sbjct: 120 LAAGELPHSFSIPASELKQLIEKTQFAISTEETRYYLNGIYFHTVEVEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237
           HRLA  E +       MP IIVPRKAV EI +++     SV+V LS ++I L     +++
Sbjct: 180 HRLARVETEAPEDSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL+++  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVAEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ +D            A YVLMPMR+
Sbjct: 355 LIQDRDGAP---------ALYVLMPMRV 373


>gi|283787599|ref|YP_003367464.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168]
 gi|282951053|emb|CBG90731.1| DNA polymerase III beta-subunit [Citrobacter rodentium ICC168]
          Length = 366

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QAHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ + V +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLHVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYPGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|163849459|ref|YP_001637502.1| DNA polymerase III subunit beta [Methylobacterium extorquens PA1]
 gi|163661064|gb|ABY28431.1| DNA polymerase III, beta subunit [Methylobacterium extorquens PA1]
          Length = 373

 Score =  394 bits (1013), Expect = e-107,   Method: Composition-based stats.
 Identities = 173/388 (44%), Positives = 238/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L+ LGH  R++ER+NTIP+  +VLL+  +  L++KA+  +IE+T  + A 
Sbjct: 1   MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH    E  LKL AVATDG
Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237
           HRLA  E D       MP IIVPRKAV EI +++     SV+V LS ++I L     + +
Sbjct: 180 HRLARVETDAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL++S  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ +D            A YVLMPMR+
Sbjct: 355 LIQDRDGAP---------ALYVLMPMRV 373


>gi|152972608|ref|YP_001337754.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238897211|ref|YP_002921959.1| DNA polymerase III subunit beta [Klebsiella pneumoniae NTUH-K2044]
 gi|262040465|ref|ZP_06013708.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|330005214|ref|ZP_08305173.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3]
 gi|150957457|gb|ABR79487.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
           pneumoniae MGH 78578]
 gi|238549541|dbj|BAH65892.1| DNA polymerase III subunit beta [Klebsiella pneumoniae subsp.
           pneumoniae NTUH-K2044]
 gi|259042218|gb|EEW43246.1| DNA polymerase III [Klebsiella pneumoniae subsp. rhinoscleromatis
           ATCC 13884]
 gi|328536346|gb|EGF62708.1| DNA polymerase III, beta subunit [Klebsiella sp. MS 92-3]
          Length = 366

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPN-HSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|225626553|ref|ZP_03784592.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo]
 gi|225618210|gb|EEH15253.1| DNA polymerase III, beta subunit [Brucella ceti str. Cudo]
          Length = 397

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397


>gi|283836134|ref|ZP_06355875.1| hypothetical protein CIT292_10555 [Citrobacter youngae ATCC 29220]
 gi|291068323|gb|EFE06432.1| DNA polymerase III, beta subunit [Citrobacter youngae ATCC 29220]
          Length = 366

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRIMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|17988225|ref|NP_540859.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           16M]
 gi|23500918|ref|NP_697045.1| DNA polymerase III subunit beta [Brucella suis 1330]
 gi|163842279|ref|YP_001626683.1| DNA polymerase III subunit beta [Brucella suis ATCC 23445]
 gi|225851548|ref|YP_002731781.1| DNA polymerase III subunit beta [Brucella melitensis ATCC 23457]
 gi|256368467|ref|YP_003105973.1| DNA polymerase III subunit beta [Brucella microti CCM 4915]
 gi|294851412|ref|ZP_06792085.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
 gi|17983990|gb|AAL53123.1| DNA polymerase iii, beta chain [Brucella melitensis bv. 1 str. 16M]
 gi|23346771|gb|AAN28960.1| DNA polymerase III, beta subunit [Brucella suis 1330]
 gi|163673002|gb|ABY37113.1| DNA polymerase III, beta subunit [Brucella suis ATCC 23445]
 gi|225639913|gb|ACN99826.1| DNA polymerase III, beta subunit [Brucella melitensis ATCC 23457]
 gi|255998625|gb|ACU47024.1| DNA polymerase III subunit beta [Brucella microti CCM 4915]
 gi|294820001|gb|EFG37000.1| DNA polymerase III [Brucella sp. NVSL 07-0026]
          Length = 397

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397


>gi|154250460|ref|YP_001411284.1| DNA polymerase III subunit beta [Parvibaculum lavamentivorans DS-1]
 gi|154154410|gb|ABS61627.1| DNA polymerase III, beta subunit [Parvibaculum lavamentivorans
           DS-1]
          Length = 372

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 156/387 (40%), Positives = 229/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ER  +L+ L H   ++ER+NTIP+  +VL++A DG L + A+  +IE+  AI A 
Sbjct: 1   MKITIERGALLKSLNHVQSVVERRNTIPILSNVLIKAEDGQLSLTATDLDIEVVEAIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T SAH LYDIVRKL +GAQ+      + G  + ++ G S F LQS P+ +FP 
Sbjct: 61  VAQPGATTASAHTLYDIVRKLPEGAQVELSTGADEG-RLQLTAGRSRFALQSLPQEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                  + FEL +  ++ L+++T FA++ EE RYYLNGI+FH  +  +   L AVATDG
Sbjct: 120 MAAGSLPHRFELPAEAMRRLIDKTRFAISMEETRYYLNGIYFHAVDGPKQKSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    A MP +IVPRK V E+ ++L     ++ V +SE++I      + ++
Sbjct: 180 HRLAQVDHDLPEGAAGMPGVIVPRKTVLELQKLLEGNSGALSVGVSETKIRFEFGGIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L+V+     +AVDRVS +S+ + +AVKL++   KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPVGNDKMLQVDGKRFAEAVDRVSTISTEKSRAVKLNIEEGKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E ++V Y+   ++I FN +YLL+I   +        E  F    S S   
Sbjct: 300 VTNPDSGSATEELSVSYSSPAIEIGFNARYLLDITGQLDGA-----EASFAFADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  +            A YVLMPMR+
Sbjct: 355 VRDSEDSM---------AVYVLMPMRV 372


>gi|62288993|ref|YP_220786.1| DNA polymerase III subunit beta [Brucella abortus bv. 1 str. 9-941]
 gi|82698934|ref|YP_413508.1| DNA polymerase III subunit beta [Brucella melitensis biovar Abortus
           2308]
 gi|237814483|ref|ZP_04593481.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A]
 gi|62195125|gb|AAX73425.1| DnaN, DNA polymerase III, beta subunit [Brucella abortus bv. 1 str.
           9-941]
 gi|82615035|emb|CAJ09958.1| DNA polymerase III, beta chain:Inorganic pyrophosphatase [Brucella
           melitensis biovar Abortus 2308]
 gi|237789320|gb|EEP63530.1| DNA polymerase III, beta subunit [Brucella abortus str. 2308 A]
          Length = 397

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397


>gi|218528085|ref|YP_002418901.1| DNA polymerase III subunit beta [Methylobacterium chloromethanicum
           CM4]
 gi|240136785|ref|YP_002961252.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1]
 gi|254558655|ref|YP_003065750.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4]
 gi|218520388|gb|ACK80973.1| DNA polymerase III, beta subunit [Methylobacterium chloromethanicum
           CM4]
 gi|240006749|gb|ACS37975.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens AM1]
 gi|254265933|emb|CAX21682.1| DNA polymerase III, beta-subunit [Methylobacterium extorquens DM4]
          Length = 373

 Score =  394 bits (1012), Expect = e-107,   Method: Composition-based stats.
 Identities = 172/388 (44%), Positives = 238/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L+ LGH  R++ER+NTIP+  +VLL+  +  L++KA+  +IE+T  + A 
Sbjct: 1   MRVTVERAALLKSLGHVHRVVERRNTIPILSNVLLRTGENGLQLKATDLDIEVTETVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     E G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGETG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  +SF + ++ LK L+E+T FA++TEE RYYLNGI+FH    E  LKL AVATDG
Sbjct: 120 LAAGELPHSFAIPAAELKQLIEKTQFAISTEETRYYLNGIYFHTLEVEGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237
           HRLA  E +       MP IIVPRKAV EI +++     SV+V LS ++I L     + +
Sbjct: 180 HRLARVETEAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVIL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL++S  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKRLTVERDAFAKAVDRVSTISSERGRAVKLAVSEGRLAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V NPD G A E ++V Y    +DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVTNPDAGSATEELDVDYEASALDIGFNARYLLDITAQLQG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ +D            A YVLMPMR+
Sbjct: 355 LIQDRDGAP---------ALYVLMPMRV 373


>gi|150398727|ref|YP_001329194.1| DNA polymerase III subunit beta [Sinorhizobium medicae WSM419]
 gi|150030242|gb|ABR62359.1| DNA polymerase III, beta subunit [Sinorhizobium medicae WSM419]
          Length = 372

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 182/387 (47%), Positives = 254/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+++   LE+KA+  ++EIT A  A 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRSDGASLEMKATDLDLEITEATQAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++     N  GT + ++ G S F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGSEVL-LATNAEGTAMTVASGRSKFSLQCLPQSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF L ++ LK L++RT FA++TEE RYYLNGIF H   +  +LKL AVATDG
Sbjct: 120 LTAGTFSHSFRLKATDLKMLIDRTQFAISTEETRYYLNGIFVHTVESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+V+  +    MP II+PRK V E+ ++L + D  V V +S+++I L I S+ M+
Sbjct: 180 HRLARADVEAPSGSEGMPGIIIPRKTVSELQKLLDNPDVVVTVEVSDAKIRLTIGSIVMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP SNDKELRV+C +  QAVDRVS +SS R +AVKL+L+  ++ +T
Sbjct: 240 SKLIDGTFPDYQRVIPASNDKELRVDCQSFSQAVDRVSTISSERGRAVKLALTDGQMTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN KYLL+I   ++       E VF L    S   
Sbjct: 300 VNNPDSGSATEEVPVGYESDPLEIGFNAKYLLDITAQLTGS-----EAVFLLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDLAAD---------DALYVLMPMRV 372


>gi|237729023|ref|ZP_04559504.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2]
 gi|226909645|gb|EEH95563.1| DNA polymerase III subunit beta [Citrobacter sp. 30_2]
          Length = 366

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQPLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYPGTELEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|304398067|ref|ZP_07379942.1| DNA polymerase III, beta subunit [Pantoea sp. aB]
 gi|304354353|gb|EFM18725.1| DNA polymerase III, beta subunit [Pantoea sp. aB]
          Length = 366

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 133/386 (34%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS TV A    DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   D+ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVRIGGSNIRAHVGDYIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKVLEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDVASPA---------AAYVVMPMRL 366


>gi|159184247|ref|NP_353331.2| DNA polymerase III subunit beta [Agrobacterium tumefaciens str.
           C58]
 gi|159139574|gb|AAK86116.2| DNA polymerase III, beta chain [Agrobacterium tumefaciens str. C58]
          Length = 372

 Score =  393 bits (1011), Expect = e-107,   Method: Composition-based stats.
 Identities = 177/387 (45%), Positives = 258/387 (66%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PA 
Sbjct: 1   MRITLERSNLLKSLNHVHRVVERRNTIPILSNVLLRASGANLDMKATDLDLEITEATPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLY+IVRKL DG+++     N  G+ + ++ G S F LQ  PE++FP 
Sbjct: 61  VEQAGATTVPAHLLYEIVRKLPDGSEVL-LATNPDGSSMTVASGRSKFSLQCLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + ++F+L ++ LK L++RT FA++TEE RYYLNGIFFH   +  +LKL AVATDG
Sbjct: 120 LTAGTFSHTFKLKAADLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + +  V V +S+++I L I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLMDNPELEVTVEVSDAKIRLAIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+C    +AVDRVS +SS R +AVKL+L+  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCQTFARAVDRVSTISSERGRAVKLALTDGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      ++ +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDNDSMEIGFNAKYLLDITSQLSG-----EDAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    D         +A YVLMPMR+
Sbjct: 355 VRDTAGD---------DALYVLMPMRV 372


>gi|49474937|ref|YP_032978.1| DNA polymerase III subunit beta [Bartonella henselae str.
           Houston-1]
 gi|49237742|emb|CAF26934.1| DNA polymerase III, beta chain [Bartonella henselae str. Houston-1]
          Length = 373

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 166/387 (42%), Positives = 252/387 (65%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV+R+ +L+ LG   R++ER+NT+P+  +VL+ A+   +++KA+  ++E+T +  A+
Sbjct: 1   MRITVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFVAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ITV AHLLYDIVRKL DG++I    +    + +++  G +NF LQ  P+ +FP 
Sbjct: 61  IKQEGAITVPAHLLYDIVRKLPDGSEIVLSVDMNQASTMSVVSGCANFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ ++  LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSTSGLKHLLDCTQFAISTEETRYYLNGIYFHVIDDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  + +  MP +IVPRK VGE+ ++LS + D  V V LSE++I  +I S+  +
Sbjct: 181 RLAQVDMEAPSGVEGMPGVIVPRKTVGELQKLLSEEVDEDVCVELSETKIRFSIGSVVFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  +   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNRQDFSSAVDRVSTISSDRGRAVKLTIEQGQLKLI 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A + + V Y   P++I FN +YLL+I   +SS     DE+VF L  + +   
Sbjct: 301 VHNPDSGSAEDQLAVTYTSDPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          +   +A YVLMP+R+
Sbjct: 356 IRN---------NGVADALYVLMPIRV 373


>gi|206578911|ref|YP_002235887.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342]
 gi|288932894|ref|YP_003436953.1| DNA polymerase III subunit beta [Klebsiella variicola At-22]
 gi|290511690|ref|ZP_06551058.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55]
 gi|206567969|gb|ACI09745.1| DNA polymerase III, beta subunit [Klebsiella pneumoniae 342]
 gi|288887623|gb|ADC55941.1| DNA polymerase III, beta subunit [Klebsiella variicola At-22]
 gi|289775480|gb|EFD83480.1| DNA polymerase III, beta subunit [Klebsiella sp. 1_1_55]
          Length = 366

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLPN-HSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|27375940|ref|NP_767469.1| DNA polymerase III subunit beta [Bradyrhizobium japonicum USDA 110]
 gi|27349078|dbj|BAC46094.1| DNA polymerase III beta chain [Bradyrhizobium japonicum USDA 110]
          Length = 372

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 165/387 (42%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATAGSTTVPAHMFYDIVRKLPDGSQIVLEADGDRAV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               +  +SF LA+  +K L++RT FA++TEE RYYLNGI+ H     +   L  VATDG
Sbjct: 120 LAAGDMSHSFSLAAKDVKRLIDRTQFAISTEETRYYLNGIYLHAAGTAKAATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++        MP +IVPRK VGE+ R++   ++ + + LS+++I   I ++ ++
Sbjct: 180 HRLAQLDLVQPKGADGMPGVIVPRKTVGEVQRLIEDTEAEMTIELSQAKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKEL V+  +   AVDRVS +SS R +AVKLSLS  KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKELVVDKKDFENAVDRVSTISSERGRAVKLSLSPGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I  +         RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----ATLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ +D  S         A YVLMPMR+
Sbjct: 355 VQDRDDKS---------ALYVLMPMRV 372


>gi|118590459|ref|ZP_01547861.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
 gi|118436922|gb|EAV43561.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
          Length = 372

 Score =  393 bits (1010), Expect = e-107,   Method: Composition-based stats.
 Identities = 174/387 (44%), Positives = 253/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A+ G + +KA+  ++EI  ++PA 
Sbjct: 1   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGAINLKATDLDLEIVESVPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +++ G+ TV AH+ YDIVRKL +G+Q+     ++  T + I  G S F LQ  PE++FP 
Sbjct: 61  IEMPGATTVPAHMFYDIVRKLPEGSQVVLETTSDNAT-LEIRAGRSKFTLQMLPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               ++ +SF L  + ++ L++ T FA++TEE RYYLNGI+ H       L+  AVATDG
Sbjct: 120 LTAGDFSHSFSLTGADIRKLIDATQFAISTEETRYYLNGIYLHTVDAGSGLQFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV   +  A MP IIVPRK VGEI ++L S ++SV+V LS+++I L   S+ ++
Sbjct: 180 HRLAQAEVPAPSGSAGMPGIIVPRKTVGEIQKLLESPEASVQVELSDTKIRLTTGSVILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKE+RV+    ++AVDRVS +SS R +AVKLSL+   L +T
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLTEGHLVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+  P+DI FN +YLL+I + +SS     D  +FRL  S S   
Sbjct: 300 VNNPDSGSATEELAVEYDAEPLDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+    D         +  +VLMPMR+
Sbjct: 355 IQDNTVD---------DCLFVLMPMRV 372


>gi|148560207|ref|YP_001258051.1| DNA polymerase III subunit beta [Brucella ovis ATCC 25840]
 gi|148371464|gb|ABQ61443.1| DNA polymerase III, beta subunit [Brucella ovis ATCC 25840]
          Length = 397

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 325 VNSPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397


>gi|110632364|ref|YP_672572.1| DNA polymerase III subunit beta [Mesorhizobium sp. BNC1]
 gi|110283348|gb|ABG61407.1| DNA polymerase III, beta subunit [Chelativorans sp. BNC1]
          Length = 372

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 178/387 (45%), Positives = 252/387 (65%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ERS++L+ LGH  R++ER+NTIP+  +VLL A+   LE+KA+  ++E+T A PAS
Sbjct: 1   MRVVLERSNLLKSLGHVHRVVERRNTIPILSNVLLSADGASLEMKATDLDLEMTEAAPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++   K +E G  +++  G S F LQ  P+++FP+
Sbjct: 61  VEQGGATTVPAHLLYDIVRKLPDGAEV-MLKVDENGQTMSVISGRSTFRLQCLPKADFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               ++ + F + S+VL++LVE+T FA++TEE RYYLNGIF H  E D  LKL AVATDG
Sbjct: 120 LTAGQFSHIFRMESAVLRSLVEKTQFAISTEETRYYLNGIFLHTLESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  A    MP IIVPRK VGE+ +++   D +V V LS+++I   I S+ ++
Sbjct: 180 HRLARAEIEAPAGSEGMPGIIVPRKTVGELQKLVDDPDVAVTVELSDTKIRFTIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL ++  +   AVDRVS +SS R +AVKLS+S  ++  T
Sbjct: 240 SKLIDGTFPDYQRVIPVGNDKELLIDRQSFSAAVDRVSTVSSERGRAVKLSISDGQVTFT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E +   YN  P++I FN +YLL++   +S       E  F L  + S   
Sbjct: 300 VNNPDSGSATEEIPAGYNADPIEIGFNARYLLDVAAQLSGS-----EAKFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+    +            YVLMPMR+
Sbjct: 355 IQDTSDERV---------LYVLMPMRV 372


>gi|161617993|ref|YP_001591880.1| DNA polymerase III subunit beta [Brucella canis ATCC 23365]
 gi|161334804|gb|ABX61109.1| DNA polymerase III, beta subunit [Brucella canis ATCC 23365]
          Length = 397

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDI+RKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397


>gi|257097208|pdb|3F1V|A Chain A, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant
 gi|257097209|pdb|3F1V|B Chain B, E. Coli Beta Sliding Clamp, 148-153 Ala Mutant
          Length = 366

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA     YYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAAAAAAYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|157144343|ref|YP_001451662.1| DNA polymerase III subunit beta [Citrobacter koseri ATCC BAA-895]
 gi|157081548|gb|ABV11226.1| hypothetical protein CKO_00047 [Citrobacter koseri ATCC BAA-895]
          Length = 366

 Score =  393 bits (1009), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYGGTEMEIGFNVSYVLDVLNALKC-----ETVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|297247410|ref|ZP_06931128.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str.
           B3196]
 gi|297174579|gb|EFH33926.1| DNA polymerase III, beta subunit [Brucella abortus bv. 5 str.
           B3196]
          Length = 397

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 26  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 85

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 86  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 144

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                +  SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 145 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 204

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 205 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 264

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 265 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 324

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 325 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 379

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 380 VRDTGDE---------DVLYVLMPMRV 397


>gi|190889986|ref|YP_001976528.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652]
 gi|190695265|gb|ACE89350.1| DNA polymerase III, beta chain protein [Rhizobium etli CIAT 652]
          Length = 372

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/387 (47%), Positives = 262/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G+ + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTDGGS-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   ++ +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|86355975|ref|YP_467867.1| DNA polymerase III subunit beta [Rhizobium etli CFN 42]
 gi|86280077|gb|ABC89140.1| DNA polymerase III, beta chain protein [Rhizobium etli CFN 42]
          Length = 372

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 185/387 (47%), Positives = 260/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PA+
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++      E G+ + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGAEVLLATSTEGGS-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   +  +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDSMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|327192029|gb|EGE59010.1| DNA polymerase III subunit beta [Rhizobium etli CNPAF512]
          Length = 372

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/387 (47%), Positives = 260/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G+ + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTDGGS-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   +  +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESNGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|218509914|ref|ZP_03507792.1| DNA polymerase III subunit beta [Rhizobium etli Brasil 5]
          Length = 372

 Score =  392 bits (1008), Expect = e-107,   Method: Composition-based stats.
 Identities = 184/387 (47%), Positives = 261/387 (67%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ERS++L+ L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PAS
Sbjct: 1   MRITIERSNLLKSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DG+++      + G+ + +  G S F LQ  PES+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLSDGSEVLLATSTDGGS-MTVQSGRSKFSLQCLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF+L ++ LK L++RT FA++TEE RYYLNGIFFH   ++ +LKL AVATDG
Sbjct: 120 LTAGTFTHSFKLKATDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA A+VD  +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++
Sbjct: 180 HRLARADVDAPSGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKE+RV+CT   QAVDRVS +SS R +AVKL+LS  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKEMRVDCTTFAQAVDRVSTISSERGRAVKLALSEGQLMLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   
Sbjct: 300 VNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR    D         +A YVLMPMR+
Sbjct: 355 IRDTAGD---------DALYVLMPMRV 372


>gi|170738369|ref|YP_001767024.1| DNA polymerase III subunit beta [Methylobacterium sp. 4-46]
 gi|168192643|gb|ACA14590.1| DNA polymerase III, beta subunit [Methylobacterium sp. 4-46]
          Length = 373

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 170/388 (43%), Positives = 239/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+++   L+++A+  +IE+T  IPA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLRATDLDIEVTETIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL DG Q+S     E G ++ I  G S F L + PE++FP 
Sbjct: 61  VVDGGATTVPAHVIYDIVRKLPDGVQVSLETTGETG-QMQIRSGRSRFMLGALPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + F+L ++ LK L+++T FA++TEE RYYLNGIFFH    E  L+L AVATDG
Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIETEAGLRLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237
           HRLA  E+        MP IIVPRKAV EI +++     SV V LS +++       +++
Sbjct: 180 HRLARVEMPAPEGSRGMPGIIVPRKAVAEIQKLVEDGGDSVGVELSPAKVRFTFSSGVTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL++   +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVEREQFAKAVDRVSTISSERGRAVKLAVGGGRLSL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+NPD G A E ++V Y   P+DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVNNPDSGSATEELDVDYEAAPLDIGFNARYLLDITAQLDG-----DSALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ K+            A YVLMPMR+
Sbjct: 355 LIQDKEGAP---------ALYVLMPMRV 373


>gi|292490135|ref|YP_003533030.1| DNA polymerase III subunit beta [Erwinia amylovora CFBP1430]
 gi|292901139|ref|YP_003540508.1| DNA polymerase III subunit beta [Erwinia amylovora ATCC 49946]
 gi|291200987|emb|CBJ48126.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC 49946]
 gi|291555577|emb|CBA24171.1| DNA polymerase III, beta-subunit [Erwinia amylovora CFBP1430]
 gi|312174328|emb|CBX82581.1| DNA polymerase III, beta-subunit [Erwinia amylovora ATCC BAA-2158]
          Length = 366

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  A
Sbjct: 1   MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QDHQPGATTVPARKFFDICRGLPEGAEIAVILE---GERMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L + DS ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELVRLLDAGDSLLQVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|298290590|ref|YP_003692529.1| DNA polymerase III subunit beta [Starkeya novella DSM 506]
 gi|296927101|gb|ADH87910.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506]
          Length = 371

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/386 (42%), Positives = 232/386 (60%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+++L+ L H  R++ER+NTIP+  +VL++ +   L ++A+  +IEI   I A 
Sbjct: 1   MKVTVERAELLKSLAHVHRVVERRNTIPILANVLMRTDARGLALRATDLDIEIVETIAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH +YDIVRKL +GAQ+      + GT + +  G S F LQ+ PE+EFP 
Sbjct: 61  VGQEGATTVPAHTIYDIVRKLPEGAQVQIETSGDRGT-LTVRAGRSRFALQTLPETEFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179
               E  + F L +  LK LV++T FA++TEE RYYLNGI+ H+ +     L AVATDGH
Sbjct: 120 LAAGEMTHRFTLPAGELKRLVDKTQFAISTEETRYYLNGIYLHVADASGPVLRAVATDGH 179

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA A+    A    MP +IVPRKAV EI R+    ++ V V LS ++I ++++ + ++ 
Sbjct: 180 RLAQAQTTAPAGATGMPGVIVPRKAVAEIQRLAEDAEAEVTVELSTAKIRVSLDRVVLTS 239

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP  NDK L V+  +   AVDRVS ++S R +AVKLS+   KL ++V
Sbjct: 240 KLIDGTFPDYGRVIPLGNDKTLVVDKADFASAVDRVSTVASERGRAVKLSIGDGKLTLSV 299

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NPD G A E + V Y   P+DI FN +YLL+I   I            +L    S   +
Sbjct: 300 TNPDSGSATEEIEVEYAAEPIDIGFNSRYLLDITSQIEG-----GTAELKLADPGSPTLV 354

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +         K  A YVLMPMR+
Sbjct: 355 QDPE---------KRGALYVLMPMRV 371


>gi|259910294|ref|YP_002650650.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|224965916|emb|CAX57449.1| DNA polymerase III subunit beta [Erwinia pyrifoliae Ep1/96]
 gi|283480418|emb|CAY76334.1| DNA polymerase III, beta-subunit [Erwinia pyrifoliae DSM 12163]
 gi|310765873|gb|ADP10823.1| DNA polymerase III subunit beta [Erwinia sp. Ejp617]
          Length = 366

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 1   MKFTVERERLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  HDHQPGATTVPARKFFDICRGLPEGAEIAVILE---GERMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   DS +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELVRLLDGGDSLLQIQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDLLKQAFARAAILSNEKFRGVRLHISENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|163867416|ref|YP_001608613.1| DNA polymerase III subunit beta [Bartonella tribocorum CIP 105476]
 gi|161017060|emb|CAK00618.1| DNA polymerase III, beta chain [Bartonella tribocorum CIP 105476]
          Length = 373

 Score =  392 bits (1007), Expect = e-107,   Method: Composition-based stats.
 Identities = 164/387 (42%), Positives = 253/387 (65%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV+R+  L+ LG   R++ER+NT+P+  +VL+ A +G +++K +  ++E+T +   +
Sbjct: 1   MRITVDRNQFLKSLGRVHRVVERRNTVPILSNVLIDAENGHVQLKTTDLDLEVTESFTVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDI+RKL DG +I    +    + +++  G  +F LQ  P+++FP 
Sbjct: 61  VEHAGATTVPAHLLYDIIRKLPDGNEIVLSVDENQASTMSVVSGCVHFQLQCLPKADFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+  +D LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSASGLKHLLDCTQFAISTEETRYYLNGIYFHVINDDVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  E++  + +  MP +IVPRKAVGE+ ++LS + D  V + LSE++I  ++ S+  +
Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDGDVCIELSETKIRFSVGSVIFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL VN  +   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELVVNRQDFSSAVDRVSTISSDRGRAVKLTIEHGQLRLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A + ++V Y+  P++I FN +YLL+I   +SS     DE+VF L  + +   
Sbjct: 301 VNSPDSGSAEDQLSVTYSSEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D           +  YVLMP+R+
Sbjct: 356 IRDNDD---------ADVLYVLMPIRV 373


>gi|220920056|ref|YP_002495357.1| DNA polymerase III subunit beta [Methylobacterium nodulans ORS
           2060]
 gi|219944662|gb|ACL55054.1| DNA polymerase III, beta subunit [Methylobacterium nodulans ORS
           2060]
          Length = 373

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 169/388 (43%), Positives = 239/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+++   L++KA+  +IE+T  IPA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRSSADGLQLKATDLDIEVTETIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     + G ++ I  G S F L + PE++FP 
Sbjct: 61  VADGGATTVPAHVIYDIVRKLPEGAQVSLETTGDTG-QMLIRSGRSRFTLGALPETDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E  + F+L ++ LK L+++T FA++TEE RYYLNGIFFH    E  +KL AVATDG
Sbjct: 120 LAAGELPHRFQLQAAELKKLIDKTQFAISTEETRYYLNGIFFHTIEAEGGVKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE-SLSM 237
           HRLA  E+        MP IIVPRKAV EI +++     SV V +S +++       + +
Sbjct: 180 HRLARVEMPAPEGSHGMPGIIVPRKAVAEIQKLVEDGGDSVGVEISSAKVRFTFSTGVML 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL+++  +L +
Sbjct: 240 ISKLIDGTFPDYQRVIPTGNDKLLTVERDQFAKAVDRVSTISSERGRAVKLAVAGGRLSL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+NPD G A E ++  Y   P+DI FN +YLL+I   +       D  +F+L    S  
Sbjct: 300 SVNNPDSGSATEELDADYEAAPLDIGFNARYLLDITAQLDG-----DTALFKLADPGSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+ KD            A YVLMPMR+
Sbjct: 355 LIQDKDGAP---------ALYVLMPMRV 373


>gi|317046240|ref|YP_004113888.1| DNA polymerase III subunit beta [Pantoea sp. At-9b]
 gi|316947857|gb|ADU67332.1| DNA polymerase III, beta subunit [Pantoea sp. At-9b]
          Length = 366

 Score =  391 bits (1006), Expect = e-107,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ N+G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEPGATTVPARKFLDICRGLPDGAEITLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   ++ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPI-GQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V++ ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVSYNGSELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDVASPA---------AAYVVMPMRL 366


>gi|293393722|ref|ZP_06638030.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera
           DSM 4582]
 gi|291423766|gb|EFE96987.1| DNA-directed DNA polymerase III beta subunit [Serratia odorifera
           DSM 4582]
          Length = 366

 Score =  391 bits (1005), Expect = e-107,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEITVQLD---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPIGQQLP-SHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVIYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 ED---------GASKSAAYVVMPMRL 366


>gi|265983182|ref|ZP_06095917.1| DNA polymerase III subunit beta [Brucella sp. 83/13]
 gi|264661774|gb|EEZ32035.1| DNA polymerase III subunit beta [Brucella sp. 83/13]
          Length = 376

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|254718226|ref|ZP_05180037.1| DNA polymerase III subunit beta [Brucella sp. 83/13]
 gi|306839966|ref|ZP_07472760.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653]
 gi|306404930|gb|EFM61215.1| DNA polymerase III, beta subunit [Brucella sp. NF 2653]
          Length = 372

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372


>gi|322830735|ref|YP_004210762.1| DNA polymerase III, subunit beta [Rahnella sp. Y9602]
 gi|321165936|gb|ADW71635.1| DNA polymerase III, beta subunit [Rahnella sp. Y9602]
          Length = 366

 Score =  391 bits (1005), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTDGALSLTGTDLEMEMVAKVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEISVALD---GDRMLVKSGRSRFSLSTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+++++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTTLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+  C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLQAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVGYEGTEMEIGFNVSYVLDVLNALKC-----EDVNLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|254502919|ref|ZP_05115070.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11]
 gi|222438990|gb|EEE45669.1| DNA polymerase III, beta subunit [Labrenzia alexandrii DFL-11]
          Length = 375

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 165/387 (42%), Positives = 250/387 (64%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A+ G L +KA+  ++EI   +PA 
Sbjct: 4   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGALNLKATDLDLEIVETVPAM 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +++ G+ TV AH+ +DIVRKL +G+Q+      +  T + I  G S F LQ  PE++FP 
Sbjct: 64  IEMPGATTVPAHMFFDIVRKLPEGSQVVLETTGDDTT-LEIRAGRSKFTLQMLPETDFPD 122

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               ++ + F L++S ++ L++ T FA++TEE RYYLNGI+ H  +     +  AVATDG
Sbjct: 123 LTAGDFSHGFTLSASDIRKLIDTTQFAISTEETRYYLNGIYLHTVDAANGQQFRAVATDG 182

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV   +  + MP IIVPRK VGEI ++L + ++ V++ LS+++I +  +++ ++
Sbjct: 183 HRLAQAEVSAPSGSSGMPGIIVPRKTVGEIQKLLENPEADVQIELSDTKIRITTDTVVLT 242

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKE+RV+    ++AVDRVS +SS R +AVKL+L   +L +T
Sbjct: 243 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLALGDGRLVLT 302

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y   P++I FN +YLL+I + +SS     D  +FRL  S S   
Sbjct: 303 VNNPDSGSATEELAVEYESDPLEIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 357

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+    D         +  +VLMPMR+
Sbjct: 358 IQDNTVD---------DCLFVLMPMRV 375


>gi|261221233|ref|ZP_05935514.1| DNA polymerase III subunit beta [Brucella ceti B1/94]
 gi|261759118|ref|ZP_06002827.1| DNA polymerase subunit III [Brucella sp. F5/99]
 gi|265997194|ref|ZP_06109751.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1]
 gi|260919817|gb|EEX86470.1| DNA polymerase III subunit beta [Brucella ceti B1/94]
 gi|261739102|gb|EEY27098.1| DNA polymerase subunit III [Brucella sp. F5/99]
 gi|262551662|gb|EEZ07652.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1]
          Length = 376

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|308188764|ref|YP_003932895.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1]
 gi|308059274|gb|ADO11446.1| DNA polymerase III, beta-subunit [Pantoea vagans C9-1]
          Length = 384

 Score =  391 bits (1004), Expect = e-106,   Method: Composition-based stats.
 Identities = 132/386 (34%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +   
Sbjct: 19  MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALT 78

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS TV A    DI R L DGA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 79  QAHEPGSTTVPARKFLDICRGLPDGAEITLALE---GDRMLVRSGRSRFSLSTLPASDFP 135

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 136 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 193

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   ++ ++V +  S I  ++     + 
Sbjct: 194 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGENPLQVQIGGSNIRAHVGDYIFTS 252

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 253 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLYITENQLKITA 312

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 313 NNPEQEEAEEMLDVSYNGTELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 367

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 368 EDVASPA---------AAYVVMPMRL 384


>gi|260563085|ref|ZP_05833571.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M]
 gi|261218004|ref|ZP_05932285.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1]
 gi|261314778|ref|ZP_05953975.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10]
 gi|261316661|ref|ZP_05955858.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94]
 gi|261321146|ref|ZP_05960343.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1]
 gi|261324124|ref|ZP_05963321.1| DNA polymerase III subunit beta [Brucella neotomae 5K33]
 gi|261751326|ref|ZP_05995035.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513]
 gi|261755891|ref|ZP_05999600.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686]
 gi|265987733|ref|ZP_06100290.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1]
 gi|265992207|ref|ZP_06104764.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|265993947|ref|ZP_06106504.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str.
           Ether]
 gi|265999708|ref|ZP_05467475.2| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9]
 gi|260153101|gb|EEW88193.1| DNA polymerase subunit III [Brucella melitensis bv. 1 str. 16M]
 gi|260923093|gb|EEX89661.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1]
 gi|261293836|gb|EEX97332.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1]
 gi|261295884|gb|EEX99380.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94]
 gi|261300104|gb|EEY03601.1| DNA polymerase III subunit beta [Brucella neotomae 5K33]
 gi|261303804|gb|EEY07301.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10]
 gi|261741079|gb|EEY29005.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513]
 gi|261745644|gb|EEY33570.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686]
 gi|262764928|gb|EEZ10849.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str.
           Ether]
 gi|263003273|gb|EEZ15566.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|263095428|gb|EEZ19029.1| DNA polymerase subunit III [Brucella melitensis bv. 2 str. 63/9]
 gi|264659930|gb|EEZ30191.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1]
 gi|326537731|gb|ADZ85946.1| DNA polymerase III, beta subunit [Brucella melitensis M5-90]
          Length = 376

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|260546287|ref|ZP_05822027.1| DNA polymerase subunit III [Brucella abortus NCTC 8038]
 gi|260759081|ref|ZP_05871429.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292]
 gi|260760807|ref|ZP_05873150.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|260096394|gb|EEW80270.1| DNA polymerase subunit III [Brucella abortus NCTC 8038]
 gi|260669399|gb|EEX56339.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292]
 gi|260671239|gb|EEX58060.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str.
           86/8/59]
          Length = 376

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|256158692|ref|ZP_05456571.1| DNA polymerase III subunit beta [Brucella ceti M490/95/1]
 gi|256254093|ref|ZP_05459629.1| DNA polymerase III subunit beta [Brucella ceti B1/94]
 gi|260169592|ref|ZP_05756403.1| DNA polymerase III subunit beta [Brucella sp. F5/99]
          Length = 372

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHTIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372


>gi|254700820|ref|ZP_05162648.1| DNA polymerase III subunit beta [Brucella suis bv. 5 str. 513]
 gi|254705187|ref|ZP_05167015.1| DNA polymerase III subunit beta [Brucella suis bv. 3 str. 686]
 gi|254707297|ref|ZP_05169125.1| DNA polymerase III subunit beta [Brucella pinnipedialis M163/99/10]
 gi|254709164|ref|ZP_05170975.1| DNA polymerase III subunit beta [Brucella pinnipedialis B2/94]
 gi|254713412|ref|ZP_05175223.1| DNA polymerase III subunit beta [Brucella ceti M644/93/1]
 gi|254716231|ref|ZP_05178042.1| DNA polymerase III subunit beta [Brucella ceti M13/05/1]
 gi|256030688|ref|ZP_05444302.1| DNA polymerase III subunit beta [Brucella pinnipedialis M292/94/1]
 gi|256045792|ref|ZP_05448670.1| DNA polymerase III subunit beta [Brucella melitensis bv. 1 str.
           Rev.1]
 gi|256060147|ref|ZP_05450329.1| DNA polymerase III subunit beta [Brucella neotomae 5K33]
 gi|256112511|ref|ZP_05453432.1| DNA polymerase III subunit beta [Brucella melitensis bv. 3 str.
           Ether]
 gi|326408013|gb|ADZ65078.1| DNA polymerase III, beta chain [Brucella melitensis M28]
          Length = 372

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372


>gi|188535561|ref|YP_001909358.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99]
 gi|188030603|emb|CAO98498.1| DNA polymerase III subunit beta [Erwinia tasmaniensis Et1/99]
          Length = 366

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  +
Sbjct: 1   MKFTVERELLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGTLLLTGTDLEMEMVARVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QDHEPGATTVPARKFFDICRGLPEGAEIAVILE---GERMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    ++L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGDELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   DS ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVIELVRLLDGGDSLLQVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDASCDLLKQAFSRAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDLEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|85713965|ref|ZP_01044954.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A]
 gi|85699091|gb|EAQ36959.1| DNA polymerase III subunit beta [Nitrobacter sp. Nb-311A]
          Length = 372

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 160/387 (41%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ L H  R++ER+NTIP+  +VL++A +  L +KA+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLSHVHRVVERRNTIPILGNVLVRAENAKLSLKATDLDLEVTETLSAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS +V AH+ YDIVRKL +GAQI    + +    + I  G S F LQ+ PE++FP 
Sbjct: 61  TGTIGSTSVPAHMFYDIVRKLPEGAQILLEGDGDRSV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
               E  ++F LA++ LK L++RT FA++TEE RYYLNGI+ H         L  VATDG
Sbjct: 120 LAAGEMTHAFTLAAADLKRLIDRTQFAISTEETRYYLNGIYLHGAGNAKSATLRGVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +      MP +I+PRK VGE+ R++   ++ + + LS+ +I   I ++ ++
Sbjct: 180 HRLAQLDLALPKGAEGMPGVIIPRKTVGEVQRLIEDSEAEIGIELSQGKIRFTIGNVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I       +  V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEG-----EAAVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +D            A YVLMPMR+
Sbjct: 355 VHDRD---------SRGALYVLMPMRV 372


>gi|189023270|ref|YP_001934038.1| DNA polymerase III subunit beta [Brucella abortus S19]
 gi|254696436|ref|ZP_05158264.1| DNA polymerase III subunit beta [Brucella abortus bv. 2 str.
           86/8/59]
 gi|254731348|ref|ZP_05189926.1| DNA polymerase III subunit beta [Brucella abortus bv. 4 str. 292]
 gi|189018842|gb|ACD71564.1| DNA polymerase III, beta chain [Brucella abortus S19]
          Length = 372

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372


>gi|13474647|ref|NP_106216.1| DNA polymerase III subunit beta [Mesorhizobium loti MAFF303099]
 gi|260461962|ref|ZP_05810207.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|14025402|dbj|BAB52002.1| DNA polymerase III beta subunit [Mesorhizobium loti MAFF303099]
 gi|259032209|gb|EEW33475.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 372

 Score =  390 bits (1003), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ERS++L+ L H  R++ER+NTIP+  +VLL A    LE+KA+  ++E+T A PA 
Sbjct: 1   MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLSAEGASLEMKATDLDLEVTEATPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++   K +E G  + ++ G S+F LQ  P+S+FP 
Sbjct: 61  VERGGATTVPAHLLYDIVRKLSDGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                + + F L S  LK L+E+T FA++TEE RYYLNGI+ H +E    LKL +VATDG
Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+D  A    MP II+PRK V E+ +++   D +V   LS+++I   I S+ ++
Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   AVDRVS +SS R +AVKLS+S  ++ + 
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLILDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E +   Y+  P++I FN KYLL++   ++       E  F L  + S   
Sbjct: 300 VNNPDSGSATEELAADYSSDPIEIGFNAKYLLDVAAQLTGT-----EAKFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     ++         A YVLMPMR+
Sbjct: 355 IHDMADET---------ALYVLMPMRV 372


>gi|329297782|ref|ZP_08255118.1| DNA polymerase III subunit beta [Plautia stali symbiont]
          Length = 366

 Score =  390 bits (1002), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++LLQ N+G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVNEGTLLLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L +GA+IS   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEPGATTVPARKFLDICRGLPEGAEISLTLE---GDRMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   ++ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPV-GQALPNHSVIVPRKGVIELVRLLDGGETPLQVQIGSSNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V++ ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRIYITENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVSYSGTELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDVASPA---------AAYVVMPMRL 366


>gi|50123358|ref|YP_052525.1| DNA polymerase III subunit beta [Pectobacterium atrosepticum
           SCRI1043]
 gi|49613884|emb|CAG77336.1| DNA polymerase III, beta chain [Pectobacterium atrosepticum
           SCRI1043]
          Length = 366

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q  +G L +  +  E+E+   +   
Sbjct: 1   MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    EDL+   VATDGH
Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEDLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L L  ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKC-----EGVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASRAAAYVVMPMRL 366


>gi|296100373|ref|YP_003610519.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
 gi|295054832|gb|ADF59570.1| DNA polymerase III subunit beta [Enterobacter cloacae subsp.
           cloacae ATCC 13047]
          Length = 366

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I        S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GDSLPNHSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C +L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDSLKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|157368282|ref|YP_001476271.1| DNA polymerase III subunit beta [Serratia proteamaculans 568]
 gi|157320046|gb|ABV39143.1| DNA polymerase III, beta subunit [Serratia proteamaculans 568]
          Length = 366

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   E   G  + +  G S F L + P  +FP
Sbjct: 61  QPHEAGATTVPARKLFDICRGLPEGAEITVTLE---GERMLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGQQLP-SHSVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 ED---------GASKSAAYVVMPMRL 366


>gi|260567347|ref|ZP_05837817.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40]
 gi|260156865|gb|EEW91945.1| DNA polymerase subunit III [Brucella suis bv. 4 str. 40]
          Length = 376

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDI+RKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIIRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|300719140|ref|YP_003743943.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661]
 gi|299064976|emb|CAX62096.1| DNA polymerase III subunit beta [Erwinia billingiae Eb661]
          Length = 366

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ N+G L +  +  E+E+   +  +
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVNEGSLLLTGTDLEMEMVARVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P S+FP
Sbjct: 61  QEHEPGATTVPARKFFDICRGLPEGAEITVMLD---GERMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  +      F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWTSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q+    S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPVGQQLP-SHSVIVPRKGVIELVRLLDGGDTPLQVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLDAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVTYGGTDMEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|311277334|ref|YP_003939565.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1]
 gi|308746529|gb|ADO46281.1| DNA polymerase III, beta subunit [Enterobacter cloacae SCF1]
          Length = 366

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F +A + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTVAQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  +     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GETLPNHSVIVPRKGVIELMRMLDGGDTPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLDAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|307942711|ref|ZP_07658056.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
 gi|307773507|gb|EFO32723.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
          Length = 372

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 173/387 (44%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A+ G L +KA+  ++EI  +IPA 
Sbjct: 1   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRADGGSLNLKATDLDLEIVESIPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++ G+ TV AH+ YDIVRKL DG+Q+      +  T + I  G S F LQ  PES+FP 
Sbjct: 61  VEMGGATTVPAHMFYDIVRKLPDGSQVVLETTGDNST-LEIRAGRSRFTLQMLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               ++ + F L +  ++ L++ T FA++TEE RYYLNGI+ H        +  AVATDG
Sbjct: 120 LTAGDFSHGFALTAGDIRKLIDTTQFAISTEETRYYLNGIYLHTVNTPSGERFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV        MP IIVPRK VGEI ++L   D++V++ LSE++I +   ++ ++
Sbjct: 180 HRLAQAEVTAPNGSHGMPGIIVPRKTVGEIQKLLEEPDANVQIELSETKIRITTGAVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKE+RV+    ++AVDRVS +SS R +AVKLSLS  ++ +T
Sbjct: 240 SKLIDGTFPDYGRVIPQGNDKEMRVDRDEFKEAVDRVSTISSERGRAVKLSLSDGRMVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y    MDI FN +YLL+I + +SS     D  +FRL  S S   
Sbjct: 300 VNNPDSGSATEELAVEYTSDAMDIGFNSRYLLDIANQLSS-----DTALFRLADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+    D         +  +VLMPMR+
Sbjct: 355 IQDNTVD---------DCLFVLMPMRV 372


>gi|261215133|ref|ZP_05929414.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya]
 gi|260916740|gb|EEX83601.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya]
          Length = 376

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|254694808|ref|ZP_05156636.1| DNA polymerase III subunit beta [Brucella abortus bv. 3 str. Tulya]
          Length = 372

 Score =  389 bits (1001), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVYRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372


>gi|260755858|ref|ZP_05868206.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870]
 gi|260884883|ref|ZP_05896497.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68]
 gi|260675966|gb|EEX62787.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870]
 gi|260874411|gb|EEX81480.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68]
          Length = 376

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 5   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 65  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                +  SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 124 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 183

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 184 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 243

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 244 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 303

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 304 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 358

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 359 VRDTGDE---------DVLYVLMPMRV 376


>gi|238750288|ref|ZP_04611790.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380]
 gi|238711521|gb|EEQ03737.1| DNA polymerase III subunit beta [Yersinia rohdei ATCC 43380]
          Length = 366

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       +EV   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EEVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       N   A YV+MPMR+
Sbjct: 350 ED---------GNSQAAAYVVMPMRL 366


>gi|254690319|ref|ZP_05153573.1| DNA polymerase III subunit beta [Brucella abortus bv. 6 str. 870]
 gi|256258573|ref|ZP_05464109.1| DNA polymerase III subunit beta [Brucella abortus bv. 9 str. C68]
          Length = 372

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 244/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 1   MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLAMKATDLDLEVNEATAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 61  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                +  SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 120 LTAGAFTNSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 180 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDTKIRFTVGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 240 SKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVSTISSERGRAVKLSIADGQLTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 300 VNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQLSGTD-----AVFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 355 VRDTGDE---------DVLYVLMPMRV 372


>gi|120552946|ref|YP_957297.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8]
 gi|120322795|gb|ABM17110.1| DNA polymerase III, beta subunit [Marinobacter aquaeolei VT8]
          Length = 367

 Score =  389 bits (1000), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  ++  L     ++E+K T+PV  +VLL+A D  L +  +  E+E+   + P 
Sbjct: 1   MKLTISRESLITPLQSIAGVVEKKQTMPVLSNVLLEAEDNTLTLTGTNMEVELVARVAPV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G ITV A  L DI R L D A I    E   G  +++  G+S+F L + P   FP
Sbjct: 61  HVDQPGRITVPARKLADICRALGDEAPIDLALE---GDRLHLRSGNSHFTLSTLPAEHFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++E   +   L    L  +++ T FAMA +++RYYLNG+   ++    ++  VATDGH
Sbjct: 118 NVEDEPESFRLALPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDVNHARV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A++D+     ++  +IVPRK V E+ R+L  ++S V + + ++ +   + S + + 
Sbjct: 176 RLAMAQLDLDTGCPELRQVIVPRKGVLELARLLDDEESPVTLVIGDNHLRATVGSYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  VIP   DK +  + + L+  + R  I+S   I+ V+L+LS ++L +  
Sbjct: 236 KLIEGKFPDYNRVIPRGGDKTVLADRSTLKSTLQRAGILSHENIRGVRLNLSPNQLQVFA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +++ V Y    + I FN  YL+++++ +      DD+V   L + NSS  I
Sbjct: 296 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----DDQVKITLSNPNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +         N     YV+MPMR+
Sbjct: 351 EAQ---------NDNRCLYVVMPMRL 367


>gi|327395908|dbj|BAK13330.1| DNA polymerase III beta subunit DnaN [Pantoea ananatis AJ13355]
          Length = 366

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q N+G L +  +  E+E+   +   
Sbjct: 1   MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L +GA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  QPHETGATTVPARKFLDICRGLPEGAEINVTLE---GERMLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   D+ ++V +  S I  ++     + 
Sbjct: 176 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDVVSPA---------AAYVVMPMRL 366


>gi|319779751|ref|YP_004139227.1| DNA polymerase III, subunit beta [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
 gi|317165639|gb|ADV09177.1| DNA polymerase III, beta subunit [Mesorhizobium ciceri biovar
           biserrulae WSM1271]
          Length = 372

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 170/387 (43%), Positives = 245/387 (63%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ERS++L+ L H  R++ER+NTIP+  +VLL A    LE+KA+  ++E+T A PA 
Sbjct: 1   MRVILERSNLLKSLNHVHRVVERRNTIPILSNVLLGAEGASLEMKATDLDLEVTEATPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++   K +E G  + ++ G S+F LQ  P+S+FP 
Sbjct: 61  VERGGATTVPAHLLYDIVRKLADGAEV-MLKTDEDGNAMTVTSGRSSFRLQCLPQSDFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                + + F L S  LK L+E+T FA++TEE RYYLNGI+ H +E    LKL +VATDG
Sbjct: 120 LSAGSFSHIFRLDSVALKGLIEKTQFAISTEETRYYLNGIYLHTHEVGGKLKLRSVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+D  A    MP II+PRK V E+ +++   D +V   LS+++I   I S+ ++
Sbjct: 180 HRLARAEIDAPAGSEGMPGIIIPRKTVSELQKLVDDPDVAVTTELSDTKIRFTIGSVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L ++  +   AVDRVS +SS R +AVKLS+S  ++ + 
Sbjct: 240 SKLIDGTFPDYQRVIPTGNDKKLIIDRQSFAAAVDRVSTISSERGRAVKLSISEGQVTLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E ++  Y+  P++I FN KYLL++   ++       E  F L  + S   
Sbjct: 300 VNNPDSGSATEELSADYSSDPIEIGFNAKYLLDVAAQLTGT-----EAKFMLADAGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     ++         A YVLMPMR+
Sbjct: 355 IHDMADET---------ALYVLMPMRV 372


>gi|270264120|ref|ZP_06192387.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13]
 gi|270041769|gb|EFA14866.1| DNA polymerase III, beta subunit [Serratia odorifera 4Rx13]
          Length = 366

 Score =  389 bits (999), Expect = e-106,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGCLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E+E    + +  G S F L + P  +FP
Sbjct: 61  QPHEAGATTVPARKFFDICRGLPEGAEIAVTLESE---RMLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGQQLP-SHSVIVPRKGVMELVRLLDGGDTLLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GASQAAAYVVMPMRL 366


>gi|227113115|ref|ZP_03826771.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
           brasiliensis PBR1692]
 gi|227328544|ref|ZP_03832568.1| DNA polymerase III subunit beta [Pectobacterium carotovorum subsp.
           carotovorum WPP14]
 gi|261819372|ref|YP_003257478.1| DNA polymerase III subunit beta [Pectobacterium wasabiae WPP163]
 gi|261603385|gb|ACX85871.1| DNA polymerase III, beta subunit [Pectobacterium wasabiae WPP163]
          Length = 366

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q  +G L +  +  E+E+   +   
Sbjct: 1   MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEGALSLTGTDLEMEMVAKVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L L  ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKC-----EGVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASRAAAYVVMPMRL 366


>gi|239830848|ref|ZP_04679177.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239823115|gb|EEQ94683.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 385

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 169/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 14  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 74  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSMSVISGKSSFRLQCLPQSDFPE 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH  E D  LKL AVATDG
Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESDGALKLRAVATDG 192

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   +  V V LS+++I   + S+ ++
Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPEVVVTVELSDAKIRFTVGSVVLT 252

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L +       +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSGSD-----AVFMLADAGSPTL 367

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 368 VRDTGDE---------DVLYVLMPMRV 385


>gi|319407987|emb|CBI81641.1| DNA polymerase III, beta chain [Bartonella schoenbuchensis R1]
          Length = 373

 Score =  388 bits (998), Expect = e-106,   Method: Composition-based stats.
 Identities = 161/387 (41%), Positives = 249/387 (64%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT++R+  L+ L    R++ER+NTIP+  +VL+ A+   +++KA+  ++E+  +  A 
Sbjct: 1   MHITIDRNQFLKSLNRVHRVVERRNTIPILSNVLINASGDGVQLKATDLDLEVIESSLAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ITV AHLLYDIVRKL  G++I    +N     +++  G +NF LQ  P+ +FP 
Sbjct: 61  VEQEGAITVPAHLLYDIVRKLSSGSEIVLKVDNNQANTMSVVSGCANFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++   F L++S LK L + T FA++TEE RYYLNGI+FH+ ++  LKL  VATDGH
Sbjct: 121 SLPGQFSCCFSLSASDLKRLFDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  ++I  MP +I+PRKAVGE+ ++LS + +  V + LSE++I  ++ S+ ++
Sbjct: 181 RLAQVDMEAPSEIKDMPGVIIPRKAVGELQKLLSEETEGDVSIELSETKIRFSVGSVVLT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP +NDK+L VN  +   AVDRVS +SS R +AVKL++ + +L + 
Sbjct: 241 SKLIDGTFPEYQRVIPLNNDKKLAVNRQDFSAAVDRVSTISSDRGRAVKLTIENGQLKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   ++S     DE+VF L  + +   
Sbjct: 301 VNNPDSGSAEDQLVADYTSDPLEIGFNSRYLLDIAAQLTS-----DEMVFMLADAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D  +         A YVLMP+R+
Sbjct: 356 IRESDDAA---------ALYVLMPIRV 373


>gi|291615642|ref|YP_003518384.1| DnaN [Pantoea ananatis LMG 20103]
 gi|291150672|gb|ADD75256.1| DnaN [Pantoea ananatis LMG 20103]
          Length = 407

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q N+G L +  +  E+E+   +   
Sbjct: 42  MKFIVEREQLLKPLQQVSGPLGGRPTLPILGNLLMQVNEGSLLLTGTDLEMEMVARVALT 101

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A    DI R L +GA+I+   E   G  + +  G S F L + P S+FP
Sbjct: 102 QPHETGATTVPARKFLDICRGLPEGAEINVTLE---GERMLVRSGRSRFSLSTLPASDFP 158

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 159 NLDDWQNEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMMFETEGEELR--TVATDGH 216

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E+LR+L   D+ ++V +  S I  ++     + 
Sbjct: 217 RLAVCSMPI-GQALPSHSVIVPRKGVIELLRLLDGGDTPLQVQIGSSNIRAHVGDYIFTS 275

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L ++ ++L +T 
Sbjct: 276 KLVDGRFPDYRRVLPKNPDKALEAGCDLLKQAFARAAILSNEKFRGVRLHITENQLKITA 335

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 336 NNPEQEEAEEMLDVSYTGSELEIGFNVSYVLDVLNALKC-----ENVRLLLTDSVSSVQI 390

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 391 EDVVSPA---------AAYVVMPMRL 407


>gi|238765485|ref|ZP_04626404.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638]
 gi|238696309|gb|EEP89107.1| DNA polymerase III subunit beta [Yersinia kristensenii ATCC 33638]
          Length = 366

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GAQI+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAQITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GASQAAAYVVMPMRL 366


>gi|123444341|ref|YP_001008306.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
           enterocolitica 8081]
 gi|332163520|ref|YP_004300097.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
 gi|122091302|emb|CAL14188.1| DNA polymerase III, beta subunit protein [Yersinia enterocolitica
           subsp. enterocolitica 8081]
 gi|318608024|emb|CBY29522.1| DNA polymerase III beta subunit [Yersinia enterocolitica subsp.
           palearctica Y11]
 gi|325667750|gb|ADZ44394.1| DNA polymerase III subunit beta [Yersinia enterocolitica subsp.
           palearctica 105.5R(r)]
          Length = 366

 Score =  388 bits (997), Expect = e-106,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GASQAAAYVVMPMRL 366


>gi|295095339|emb|CBK84429.1| DNA polymerase III, beta subunit [Enterobacter cloacae subsp.
           cloacae NCTC 9394]
          Length = 366

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I        S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GDSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|238759585|ref|ZP_04620747.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236]
 gi|238702244|gb|EEP94799.1| DNA polymerase III subunit beta [Yersinia aldovae ATCC 35236]
          Length = 366

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASQAAAYVVMPMRL 366


>gi|22127980|ref|NP_671403.1| DNA polymerase III subunit beta [Yersinia pestis KIM 10]
 gi|45443727|ref|NP_995266.1| DNA polymerase III subunit beta [Yersinia pestis biovar Microtus
           str. 91001]
 gi|51598226|ref|YP_072417.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP
           32953]
 gi|108810132|ref|YP_654048.1| DNA polymerase III subunit beta [Yersinia pestis Antiqua]
 gi|108814114|ref|YP_649881.1| DNA polymerase III subunit beta [Yersinia pestis Nepal516]
 gi|150260969|ref|ZP_01917697.1| DNA polymerase III, beta subunit protein [Yersinia pestis
           CA88-4125]
 gi|153950603|ref|YP_001403094.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis IP
           31758]
 gi|162419235|ref|YP_001608447.1| DNA polymerase III subunit beta [Yersinia pestis Angola]
 gi|165926167|ref|ZP_02221999.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165936833|ref|ZP_02225399.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|166009556|ref|ZP_02230454.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166213164|ref|ZP_02239199.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|167401667|ref|ZP_02307161.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167422858|ref|ZP_02314611.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167425558|ref|ZP_02317311.1| DNA polymerase III, beta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|167470925|ref|ZP_02335629.1| DNA polymerase III, beta subunit [Yersinia pestis FV-1]
 gi|170022264|ref|YP_001718769.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis YPIII]
 gi|186893346|ref|YP_001870458.1| DNA polymerase III subunit beta [Yersinia pseudotuberculosis PB1/+]
 gi|218931073|ref|YP_002348948.1| DNA polymerase III subunit beta [Yersinia pestis CO92]
 gi|229839803|ref|ZP_04459962.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229841888|ref|ZP_04462044.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229896765|ref|ZP_04511928.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A]
 gi|229904653|ref|ZP_04519764.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
 gi|270488364|ref|ZP_06205438.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27]
 gi|294505624|ref|YP_003569686.1| DNA polymerase III subunit beta [Yersinia pestis Z176003]
 gi|21961125|gb|AAM87654.1|AE014012_11 DNA polymerase III, beta-subunit [Yersinia pestis KIM 10]
 gi|45438597|gb|AAS64143.1| DNA polymerase III, beta subunit protein [Yersinia pestis biovar
           Microtus str. 91001]
 gi|51591508|emb|CAH23180.1| DNA polymerase III, beta subunit protein [Yersinia
           pseudotuberculosis IP 32953]
 gi|108777762|gb|ABG20281.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
 gi|108782045|gb|ABG16103.1| DNA polymerase III, beta subunit [Yersinia pestis Antiqua]
 gi|115349684|emb|CAL22665.1| DNA polymerase III, beta subunit protein [Yersinia pestis CO92]
 gi|149290377|gb|EDM40454.1| DNA polymerase III, beta subunit protein [Yersinia pestis
           CA88-4125]
 gi|152962098|gb|ABS49559.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis IP
           31758]
 gi|162352050|gb|ABX85998.1| DNA polymerase III, beta subunit [Yersinia pestis Angola]
 gi|165915075|gb|EDR33686.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. IP275]
 gi|165922027|gb|EDR39204.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. F1991016]
 gi|165991478|gb|EDR43779.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. E1979001]
 gi|166205462|gb|EDR49942.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. B42003004]
 gi|166958250|gb|EDR55271.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. MG05-1020]
 gi|167049049|gb|EDR60457.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Antiqua
           str. UG05-0454]
 gi|167055572|gb|EDR65365.1| DNA polymerase III, beta subunit [Yersinia pestis biovar
           Mediaevalis str. K1973002]
 gi|169748798|gb|ACA66316.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis
           YPIII]
 gi|186696372|gb|ACC87001.1| DNA polymerase III, beta subunit [Yersinia pseudotuberculosis
           PB1/+]
 gi|229678771|gb|EEO74876.1| DNA polymerase III, beta subunit [Yersinia pestis Nepal516]
 gi|229691227|gb|EEO83280.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. India 195]
 gi|229696169|gb|EEO86216.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Orientalis
           str. PEXU2]
 gi|229700203|gb|EEO88239.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides A]
 gi|262363788|gb|ACY60509.1| DNA polymerase III subunit beta [Yersinia pestis D106004]
 gi|262367725|gb|ACY64282.1| DNA polymerase III subunit beta [Yersinia pestis D182038]
 gi|270336868|gb|EFA47645.1| DNA polymerase III, beta subunit [Yersinia pestis KIM D27]
 gi|294356083|gb|ADE66424.1| DNA polymerase III subunit beta [Yersinia pestis Z176003]
 gi|320017426|gb|ADW00998.1| DNA polymerase III, beta subunit [Yersinia pestis biovar Medievalis
           str. Harbin 35]
          Length = 366

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASQAAAYVVMPMRL 366


>gi|238783049|ref|ZP_04627076.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970]
 gi|238716050|gb|EEQ08035.1| DNA polymerase III subunit beta [Yersinia bercovieri ATCC 43970]
          Length = 366

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GASQAAAYVVMPMRL 366


>gi|238797844|ref|ZP_04641336.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969]
 gi|238718260|gb|EEQ10084.1| DNA polymerase III subunit beta [Yersinia mollaretii ATCC 43969]
          Length = 366

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSDVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GASQAAAYVVMPMRL 366


>gi|217979804|ref|YP_002363951.1| DNA polymerase III subunit beta [Methylocella silvestris BL2]
 gi|217505180|gb|ACK52589.1| DNA polymerase III, beta subunit [Methylocella silvestris BL2]
          Length = 372

 Score =  388 bits (996), Expect = e-105,   Method: Composition-based stats.
 Identities = 162/387 (41%), Positives = 237/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH  R++ER+NTIP+  +VLL+A    L +KA+  ++E+T  + A 
Sbjct: 1   MKVTLERAALLKSLGHVHRVVERRNTIPILSNVLLRAEGKSLLLKATDLDLEVTERLAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G  T+ AH LYDIVRKL DG+Q+S     + G ++ +  G S F LQ+ P+S+FP 
Sbjct: 61  VGVAGGTTLPAHTLYDIVRKLPDGSQVSLEIAGDSG-QLLLRSGRSRFNLQTLPDSDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               ++ + F L  + LK L+E+T FA++ EE RYYLNGIF H  E +    L AVATDG
Sbjct: 120 LAAGDFSHDFLLPPADLKRLIEKTQFAISNEETRYYLNGIFMHSMEAEGASVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+      + MP +IVPRKAV E+ +++    + ++V LS ++       + ++
Sbjct: 180 HRLARVEIACPKGASGMPGVIVPRKAVTEVQKLIEDLSADIRVELSTTKARFTFGDVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V       AVDRVS +SS R +AVKL+++  KL ++
Sbjct: 240 TKLIDGTFPDYMRVIPAGNDKRLIVERGPFAAAVDRVSTISSERGRAVKLAIADGKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E ++V Y+  P+DI FN +YLL+I + + S     D  +F+L    S   
Sbjct: 300 VTNPDSGSAQEELDVDYDSTPLDIGFNARYLLDITEQLDS-----DTALFKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ +D           +A YVLMPMR+
Sbjct: 355 VQDRD---------GASALYVLMPMRV 372


>gi|253686411|ref|YP_003015601.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
 gi|251752989|gb|ACT11065.1| DNA polymerase III, beta subunit [Pectobacterium carotovorum subsp.
           carotovorum PC1]
          Length = 366

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  VER  +L+ L      +  + T+P+  ++L+Q  +  L +  +  E+E+   +   
Sbjct: 1   MKFIVERERLLKPLQQVSSPLGGRPTLPILGNLLIQVTEDALSLTGTDLEMEMVAKVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A  L+DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKLFDICRGLPEGAEITIMLD---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSDVEFSLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L L  ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDLLKQAFSRAAILSNEKFRGVRLHLIQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVQYDGTEMEIGFNVSYVLDVLNALKC-----EGVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASRAAAYVVMPMRL 366


>gi|37524034|ref|NP_927378.1| DNA polymerase III subunit beta [Photorhabdus luminescens subsp.
           laumondii TTO1]
 gi|36783457|emb|CAE12297.1| DNA polymerase III, beta chain [Photorhabdus luminescens subsp.
           laumondii TTO1]
          Length = 366

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMMARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L + P S+FP
Sbjct: 61  LPHEVGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          NA YV+MPMR+
Sbjct: 350 EDC---------ANHNAAYVVMPMRL 366


>gi|84501259|ref|ZP_00999464.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597]
 gi|84390550|gb|EAQ03038.1| DNA polymerase III subunit beta [Oceanicola batsensis HTCC2597]
          Length = 372

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGNEVQFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGAQ++  ++   G  + ++ G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGAQVTLSEDGAAG-RLTVAAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ E  +   L  VATDG
Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRMLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK VGE+ ++L   +  V VS+SE+++      ++++
Sbjct: 180 HRLARIDATLPEGAADMPGVIVPRKTVGELRKLLDDDELQVAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+ ++  +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFAKAVDRVATVSSERSRAVKLALDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +S+     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + +  +A YV+MPMR+
Sbjct: 355 MR---------EGSDTSAVYVVMPMRV 372


>gi|261341639|ref|ZP_05969497.1| hypothetical protein ENTCAN_08107 [Enterobacter cancerogenus ATCC
           35316]
 gi|288315996|gb|EFC54934.1| DNA polymerase III, beta subunit [Enterobacter cancerogenus ATCC
           35316]
          Length = 366

 Score =  387 bits (995), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMIARVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHNAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I        S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GDSLPNHSVIVPRKGVIELMRMLDGGETPLRVQIGSNNIRAHVGDFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGAEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|182679952|ref|YP_001834098.1| DNA polymerase III subunit beta [Beijerinckia indica subsp. indica
           ATCC 9039]
 gi|182635835|gb|ACB96609.1| DNA polymerase III, beta subunit [Beijerinckia indica subsp. indica
           ATCC 9039]
          Length = 371

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 161/387 (41%), Positives = 233/387 (60%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH  R++ER+NTIP+  +VLL ++   L +KA+  ++E+T  + A 
Sbjct: 1   MKVTLERAALLKALGHVHRVVERRNTIPILSNVLLHSDGDGLLLKATDLDLEVTERLTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ AH+LYDIVRKL DG+QIS   E      + +  G S F LQS PES+FP 
Sbjct: 61  TGTQGGTTLPAHILYDIVRKLPDGSQIS--LETTEAGPLQLRSGRSRFTLQSLPESDFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                +  +F L +  LK L+++T FA+++EE RYYLNGIF H  E    + L AVATDG
Sbjct: 119 LAAGTFEQTFTLKAGDLKRLIDKTQFAISSEETRYYLNGIFMHTTEVEGHVMLRAVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+      + MP II+PRK V E+ +++  +   VK+ +S ++I      + ++
Sbjct: 179 HRLARVEIPAPQGASGMPGIIIPRKTVAEVQKLVEDQAQEVKLEVSPTKIRFTFGEVVLT 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V+    + AVDRVS +SS R +AVKL+L+  KL ++
Sbjct: 239 SKLIDGTFPDYARVIPSGNDKFLTVDRGPFQDAVDRVSTISSERGRAVKLALAEGKLTLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A+E + V Y+  P+DI FN +YLL+I   + S     D  +F+     S   
Sbjct: 299 VTNPDSGSAVEELEVDYDAAPIDIGFNARYLLDIAAQLDS-----DTALFKFADPGSPTL 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +D           +A YVLMPMR+
Sbjct: 354 VLDRD---------GASALYVLMPMRV 371


>gi|88705399|ref|ZP_01103110.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71]
 gi|88700489|gb|EAQ97597.1| DNA polymerase III, beta chain [Congregibacter litoralis KT71]
          Length = 367

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 208/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  +L+ L     ++ER+ T+PV  +VLL  +   L I  +  E+E+ G +   
Sbjct: 1   MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L DGA +     +    +  +  G S F L + P  EFP
Sbjct: 61  TAGEAGEITVPARKLADICKSLPDGADLEIAVAD---GKATVRSGRSRFTLATLPAREFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++    + F L    L+ L+ERT FAMA +++RYYLNG+++ +     +L AVATDGH
Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAG--RLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+       +  +   +I+PRK V E+ R++ S D  V + L  + +       + + 
Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQSDDEDVTIILGSNHLRATTAEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P + DK ++ + T LRQA  R +I+S+ + + V+L LS   L +  
Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSEGSLEIVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A ES+ V Y+   ++I FN  YLL+++  +S ++     + F L   NSS  +
Sbjct: 296 NNPEQEQAEESLPVDYSGDALEIGFNVGYLLDVLGVLSGEK-----IRFSLSDPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 351 EETD---------GGDSLYVVMPMRL 367


>gi|85057980|ref|YP_453682.1| DNA polymerase III subunit beta [Sodalis glossinidius str.
           'morsitans']
 gi|84778500|dbj|BAE73277.1| DNA polymerase III beta subunit protein DnaN [Sodalis glossinidius
           str. 'morsitans']
          Length = 366

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQ ++  L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVSEDRLLLTGTDLEMEMVAQVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + I  G S + L + P S FP
Sbjct: 61  AAHEPGATTVPARKFFDICRGLPEGAEIAVTLE---GERMLIRSGRSRYSLSTLPASNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L+ S+LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLSQSILKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  +     S+IVPRK V E++R+L   ++ VK+ +  + I  ++     + 
Sbjct: 176 RLAVCAMSV-GEALPSHSVIVPRKGVMELVRMLDGGENPVKLQIGSNNIRASVGDYIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L LS+++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDVLKQAFARAAILSNEKFRGVRLYLSANQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L    SSV I
Sbjct: 295 NNPEQEEAEEILDVTYQGSEMEIGFNVSYVLDVLNALKC-----EEVRLLLTDGVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASQAAAYVVMPMRL 366


>gi|240849790|ref|YP_002971178.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup]
 gi|240266913|gb|ACS50501.1| DNA polymerase III subunit beta [Bartonella grahamii as4aup]
          Length = 373

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 163/387 (42%), Positives = 250/387 (64%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV+RS  L+ LG   R++ER+NT+P+  +VL+ A +G +++KA+  ++E+T +   +
Sbjct: 1   MRITVDRSQFLKSLGRVHRVVERRNTVPILSNVLIDAENGSVQLKATDLDLEVTESFAVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AHLLYDI+RKL D  ++    +      +++  G ++F LQ  P+++FP 
Sbjct: 61  VKQAGATTVPAHLLYDIIRKLPDSNEVVLSVDENQAGTMSVVSGCAHFQLQCLPKADFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+ H+  +  LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYLHVINDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  E++  + +  MP +IVPRKAVGE+ ++LS + DS V + LSE++I  ++ S+  +
Sbjct: 181 RLAQVEMEAPSGVEGMPGVIVPRKAVGELQKLLSEENDSDVCIELSETKIRFSVGSVIFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDKEL VN  +   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPDYQRVIPLGNDKELIVNRQDFSSAVDRVSTISSDRGRAVKLTIEHRQLRLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A + ++V Y   P++I FN +YLL+I   +SS     DE+VF L  + +   
Sbjct: 301 VNSPDSGSAEDQLSVTYASEPLEIGFNSRYLLDIAGQLSS-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D           +  YVLMP+R+
Sbjct: 356 IRDNDD---------ADVLYVLMPIRV 373


>gi|153007349|ref|YP_001368564.1| DNA polymerase III subunit beta [Ochrobactrum anthropi ATCC 49188]
 gi|151559237|gb|ABS12735.1| DNA polymerase III, beta subunit [Ochrobactrum anthropi ATCC 49188]
          Length = 385

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 169/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS++L+ L H  R++ER+NTIP+  +VLLQA    L +KA+  ++E+  A  A 
Sbjct: 14  MRVTLERSNLLKSLNHVHRVVERRNTIPILSNVLLQAEGASLALKATDLDLEVNEATAAM 73

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AHLLYDIVRKL DGA++     N  G  +++  G S+F LQ  P+S+FP 
Sbjct: 74  VEQAGATTVPAHLLYDIVRKLPDGAEV-MLSTNPDGGSISVISGKSSFRLQCLPQSDFPE 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + +SF + +  LK L++RT FA++TEE RYYLNGIFFH   +E  LKL AVATDG
Sbjct: 133 LTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLNGIFFHAIESEGALKLRAVATDG 192

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++  +    MP II+PRK V E+ +++   D  V V LS+++I   + S+ ++
Sbjct: 193 HRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPDVVVTVELSDAKIRFTVGSVVLT 252

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+YQ VIP  NDK+L +       +VDRVS +SS R +AVKLS++  +L +T
Sbjct: 253 SKLIDGTFPDYQRVIPSGNDKKLTIGRQEFAASVDRVSTISSERGRAVKLSIADGQLTLT 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y+  P+DI FN KYLL+I   +S  +      VF L  + S   
Sbjct: 313 VNNPDSGSATDELAADYDADPLDIGFNSKYLLDITSQLSGSD-----AVFMLADAGSPTL 367

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R    +         +  YVLMPMR+
Sbjct: 368 VRDTGDE---------DVLYVLMPMRV 385


>gi|90421530|ref|YP_529900.1| DNA polymerase III subunit beta [Rhodopseudomonas palustris BisB18]
 gi|90103544|gb|ABD85581.1| DNA polymerase III, beta subunit [Rhodopseudomonas palustris
           BisB18]
          Length = 372

 Score =  387 bits (994), Expect = e-105,   Method: Composition-based stats.
 Identities = 168/387 (43%), Positives = 238/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VLL+A  G L +KA+  ++E+T  +PA 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLLRAEKGRLSLKATDLDLEVTETLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PE++FP 
Sbjct: 61  TATGGSTTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSRFTLQTLPENDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
               E  +SF L ++ +K L++RT FA++TEE RYYLNGI+ H         L AVATDG
Sbjct: 120 LAAGEMTHSFTLTAADVKRLIDRTQFAISTEETRYYLNGIYLHGAGTAAAATLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ + +  A MP +IVPRK VGE+ R++   +++V + LS  +I   +  + ++
Sbjct: 180 HRLAQVDLPLPSGAAGMPGVIVPRKTVGEVQRLIEDTEAAVGIELSVGKIRFTLGDVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS+ KL ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELVVDKKDFEAAVDRVSTISSERGRAVKLALSAGKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I  +       V +L    S   
Sbjct: 300 VTNPDSGSATEELEVEYASDALDIGFNSRYLLDIAAQIEGEV-----AVLKLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ +D            A YVLMPMR+
Sbjct: 355 VQDRDA---------KGALYVLMPMRV 372


>gi|238793144|ref|ZP_04636772.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909]
 gi|238727517|gb|EEQ19043.1| DNA polymerase III subunit beta [Yersinia intermedia ATCC 29909]
          Length = 366

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  NPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GASQAAAYVVMPMRL 366


>gi|238787827|ref|ZP_04631624.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641]
 gi|238724170|gb|EEQ15813.1| DNA polymerase III subunit beta [Yersinia frederiksenii ATCC 33641]
          Length = 366

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  QPHTQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPV-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L+ +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLKASCDLLKQAFARAAILSNEKFRGVRLYVSQNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       N   A YV+MPMR+
Sbjct: 350 ED---------GNSQAAAYVVMPMRL 366


>gi|145597326|ref|YP_001161401.1| DNA polymerase III subunit beta [Yersinia pestis Pestoides F]
 gi|145209022|gb|ABP38429.1| DNA polymerase III, beta subunit [Yersinia pestis Pestoides F]
          Length = 366

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLRLTGTDLEMEMVACVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P  +FP
Sbjct: 61  QSHEPGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAIDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKMLEAGCDLLKQAFSRAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNALKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 EDSASQV---------AAYVVMPMRL 366


>gi|183597171|ref|ZP_02958664.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827]
 gi|188023485|gb|EDU61525.1| hypothetical protein PROSTU_00414 [Providencia stuartii ATCC 25827]
          Length = 366

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +P +
Sbjct: 1   MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALLLTGTDLEMEMMAHVPLT 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I    +++    + +  G S F L + P ++FP
Sbjct: 61  QEHDVGATTVPARKFFDIWRGLPEGSEIRVELDDD---RLLVRSGRSRFSLSTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    + L+   V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI   +    S+IVPRK V E++R+L   D+ V++ +  + I  ++     + 
Sbjct: 176 RLAVCAMDIGQDLP-SHSVIVPRKGVIELMRLLDGGDTPVQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S     + V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVNYQGTEMEIGFNVSYILDVLNALKS-----ENVTLFLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         A YV+MPMR+
Sbjct: 350 EDSASSA---------AVYVVMPMRL 366


>gi|320539855|ref|ZP_08039514.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson]
 gi|320030041|gb|EFW12061.1| DNA polymerase III, beta subunit [Serratia symbiotica str. Tucson]
          Length = 366

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 133/386 (34%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  +L+ L      +  + T+P+  ++LLQA +G L +  +  E+E+   +  S
Sbjct: 1   MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQAMEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   ENE    + +  G S F L + P ++FP
Sbjct: 61  QTHEAGATTVPARKFFDICRGLPEGAEIAVTLENE---RILVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   +ATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q+    S+IVPRK V E+LR+L S D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGQQLP-SHSVIVPRKGVMELLRLLDSGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKILEAGCDLLKQAFARAAILSNEKFRGVRLYASHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ + S     + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYDGTEMEIGFNVSYVLDVLNALKS-----ENVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------GVSQAAAYVVMPMRL 366


>gi|144900239|emb|CAM77103.1| DNA polymerase III subunit beta [Magnetospirillum gryphiswaldense
           MSR-1]
          Length = 372

 Score =  386 bits (993), Expect = e-105,   Method: Composition-based stats.
 Identities = 147/387 (37%), Positives = 221/387 (57%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ L H   ++ER+NTIP+  +V L+   G L + A+  +++I    PA 
Sbjct: 1   MKLTIERAQLLKSLAHVQSVVERRNTIPILSNVKLEGRPGSLSLNATDMDLDIIETAPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T  AH  Y+IVRKL DG+Q+    + + G  + +  G S F L   P  +FP 
Sbjct: 61  VSRPGATTAPAHTFYEIVRKLPDGSQVEIEHDADTGL-MTLRSGRSKFTLSCLPVEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
               E  ++F L ++ LK LV+RT FA++TEE RYYLNGI+ H         L AVATDG
Sbjct: 120 LSGGELPFTFCLTAAELKALVDRTRFAISTEETRYYLNGIYLHAATTPGGEVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  EV +    A MP +I+PRK V E+ +++   +  V VSLSE+++        ++
Sbjct: 180 HRLARVEVTLPEGAAGMPGVIIPRKTVQEMRKLIDETEGEVTVSLSETKLRFAFADAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK+L V+  +  QAVDRVS +S+ + +A+KLSL    + ++
Sbjct: 240 SKLIDGTFPDYERVIPADNDKQLDVDVKSFAQAVDRVSAISTEKSRAIKLSLEKGTVTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +P+ G A E +   Y   P++I FN +YLL+I+  +  D+       F +  + S   
Sbjct: 300 ASSPENGSATEEIEAQYESTPLEIGFNSRYLLDILGQVEGDK-----ACFSMADAASPTV 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R               A YVLMPMR+
Sbjct: 355 VRD---------GVNAGAIYVLMPMRV 372


>gi|268593489|ref|ZP_06127710.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131]
 gi|291310911|gb|EFE51364.1| DNA polymerase III, beta subunit [Providencia rettgeri DSM 1131]
          Length = 366

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +L+ L      +  + T+P+  ++LLQ  +G L++  +  E+E+   +  +
Sbjct: 1   MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGTLQLTGTDLEMEMMANVALT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I     ++    + +  G S F L + P ++FP
Sbjct: 61  GEHEIGATTVPARKFFDIWRGLPEGSEIHVELNDD---RLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    ED  L  V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFET--EDQMLRTVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMDI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLYFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S     + V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYILDVLNALKS-----ENVQLLLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D  +         A YV+MPMR+
Sbjct: 350 EDADSKA---------AVYVVMPMRL 366


>gi|328541626|ref|YP_004301735.1| DNA polymerase III, beta subunit [polymorphum gilvum SL003B-26A1]
 gi|326411378|gb|ADZ68441.1| DNA polymerase III, beta subunit [Polymorphum gilvum SL003B-26A1]
          Length = 372

 Score =  386 bits (992), Expect = e-105,   Method: Composition-based stats.
 Identities = 164/387 (42%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER+D+L+ L H  R++ER+NTIP+  +VLL+A  G L++KA+  ++E+   +PA 
Sbjct: 1   MKATLERTDLLKSLTHVHRVVERRNTIPILSNVLLRAEHGALKLKATDLDLEVLETVPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G  TV AH++YDIVRKL +G+Q+      +  T + I  G S F LQ  PE++FP 
Sbjct: 61  IEAPGGTTVPAHMIYDIVRKLPEGSQVVLETTGDNAT-LEIRAGRSRFALQMLPEADFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
                + + F L++  ++ L++ T FA++TEE RYYLNGI+ H     +  K  AVATDG
Sbjct: 120 LTAGTFSHQFTLSAGAIRKLIDTTQFAISTEETRYYLNGIYLHTVDTPQGQKFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AEV   A  A MP IIVPRK VGEI ++L  +++ V+V +S+++I +    + ++
Sbjct: 180 HRLAQAEVPAPAGAAGMPGIIVPRKTVGEIQKLLEDREAEVQVEISDTKIRVTTGPVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDKELRV+    R+AVDRVS +SS R +AVKL+LS  +L + 
Sbjct: 240 SKLIDGTFPDYGRVIPQHNDKELRVDRDEFREAVDRVSTISSERGRAVKLALSEGRLVLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A E + V Y+  P++I FN +YLL+I   ++      D  +FRL    S   
Sbjct: 300 VNNPDSGSATEELAVEYDSDPLEIGFNSRYLLDIAAQLTG-----DTALFRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++    +         +  +VLMPMR+
Sbjct: 355 VQDNAAE---------DCLFVLMPMRV 372


>gi|84684520|ref|ZP_01012421.1| DNA polymerase III subunit beta [Maritimibacter alkaliphilus
           HTCC2654]
 gi|84667499|gb|EAQ13968.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
           HTCC2654]
          Length = 372

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 153/387 (39%), Positives = 236/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+VER+ +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISVERAVLLKAVGQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA +    +   G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGAMVQLTDDGAAG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H++  E    L  VATDG
Sbjct: 120 MASSEYSANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDAEGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPKGAEDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N K++ V+     +AVDRV+ +SS R +AVKL+L+ DKL ++
Sbjct: 240 SKVIDGTFPDYTRVIPMGNTKKMEVDAAEFAKAVDRVATVSSERSRAVKLALAEDKLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  M+I FN KYLLEI     + +V  +  VF  D++   V 
Sbjct: 300 VNAPDAGAAEEELIVAYGDEGMEIGFNAKYLLEI-----ASQVDRENAVFMFDNAGQPVL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|254472242|ref|ZP_05085642.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062]
 gi|211958525|gb|EEA93725.1| DNA polymerase III, beta subunit [Pseudovibrio sp. JE062]
          Length = 372

 Score =  386 bits (991), Expect = e-105,   Method: Composition-based stats.
 Identities = 167/387 (43%), Positives = 243/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+++L+ L H  R++ER+NTIP+  +V+LQA  G L++KA+  ++E+  +I A 
Sbjct: 1   MKVTLERTELLKSLTHVHRVVERRNTIPILSNVMLQAEGGNLKLKATDLDLEVVESIAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AH++Y+IVRKL DG+Q+      +  T + I  G S F LQ  P ++FP 
Sbjct: 61  VETPGATTVPAHMIYEIVRKLPDGSQVVLETSGDDST-MEIRAGRSRFALQILPVTDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               E+ +SF + +  ++ L++ T FA++TEE RYYLNGI+ H     E L+  AVATDG
Sbjct: 120 LTAGEFSHSFTMTAGGIRKLIDSTQFAISTEETRYYLNGIYMHSLDIGEGLRFRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE++       MP IIVPRK VGEI ++L   +  +KV +SE++I   I  + ++
Sbjct: 180 HRLAQAELEAPEGSDGMPGIIVPRKTVGEIQKLLDDPEVEIKVEISETKIRFTIGDIILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDKELRV+    ++AVDRVS ++S R +AVK++LS  K+ +T
Sbjct: 240 SKLIDGTFPDYERVIPKGNDKELRVDRDVFKEAVDRVSTIASDRGRAVKMALSEGKIVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y+    +I FN KYLL+I   + +     D  +F L  S S   
Sbjct: 300 VTNPDSGTATEEVAVEYDNEEFEIGFNSKYLLDIAAQLEA-----DTALFTLADSGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR +  D          A YVLMPMR+
Sbjct: 355 IRDEGSDE---------AIYVLMPMRV 372


>gi|149375635|ref|ZP_01893404.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893]
 gi|149360037|gb|EDM48492.1| DNA polymerase III, beta subunit [Marinobacter algicola DG893]
          Length = 371

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  +L  L     ++ERK T+PV  +VLL A D  L +  +  E+E+ G + P 
Sbjct: 5   MKLTISRESLLTPLQSIAGVVERKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVGRVSPV 64

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G ITV A  L DI R L D A I    E   G  +++  G S+F L + P   FP
Sbjct: 65  HVDQPGRITVPARKLSDICRALGDEAPIELALE---GDRLHLRCGASHFTLSTLPAEHFP 121

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +++   +  EL    L  + + T FAMA +++RYYLNG+   ++++ ++   VATDGH
Sbjct: 122 NVEDDAESFGLELPQKELSRMFDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 179

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A  D+     +   +IVPRK V E+ R+L   ++ V + + ++ +   + S + + 
Sbjct: 180 RLAMAHFDLPTGCPEPRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 239

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  VIP   DK +  +   L+  + R  I+S   I+ V+L+L+ ++L +  
Sbjct: 240 KLIEGKFPDYNRVIPRGGDKVVLADRATLKNTLQRAGILSHENIRGVRLNLAPNELQVFA 299

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +++ V Y    + I FN  YL+++++ +      +D+V   L + NSS  I
Sbjct: 300 NNPDQEQAEDALPVEYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLANPNSSALI 354

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +         N     YV+MPMR+
Sbjct: 355 EAE---------NDNRCLYVVMPMRL 371


>gi|15988190|pdb|1JQL|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of Beta-Delta (1-140)
 gi|16974833|pdb|1JQJ|A Chain A, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
 gi|16974834|pdb|1JQJ|B Chain B, Mechanism Of Processivity Clamp Opening By The Delta
           Subunit Wrench Of The Clamp Loader Complex Of E. Coli
           Dna Polymerase Iii: Structure Of The Beta-Delta Complex
          Length = 366

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GERMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +  S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQAFARAAAASNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|238754005|ref|ZP_04615364.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473]
 gi|238707757|gb|EEQ00116.1| DNA polymerase III subunit beta [Yersinia ruckeri ATCC 29473]
          Length = 366

 Score =  385 bits (990), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVTLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFMLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMPI-GQSLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDLLKQAFARAAILSNEKFRGVRLYVSHNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVSYEGTEMEIGFNVSYVLDVLNTLKC-----EDVRLLLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 ED---------SASQAAAYVVMPMRL 366


>gi|300721091|ref|YP_003710359.1| DNA polymerase III subunit beta [Xenorhabdus nematophila ATCC
           19061]
 gi|297627576|emb|CBJ88095.1| DNA polymerase III, beta-subunit [Xenorhabdus nematophila ATCC
           19061]
          Length = 366

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E E+   +   
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLSGRPTLPILGNLLLQVTEGSLLLTGTDLETEMKARVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVKI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 EN---------SASQAATYVVMPMRL 366


>gi|149202936|ref|ZP_01879907.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035]
 gi|149143482|gb|EDM31518.1| DNA polymerase III subunit beta [Roseovarius sp. TM1035]
          Length = 372

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DG+ ++   +   G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGASG-RLTVQAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    + MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + + V+     QAVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N   A YV+MPMR+
Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372


>gi|85705684|ref|ZP_01036781.1| DNA polymerase III subunit beta [Roseovarius sp. 217]
 gi|85669674|gb|EAQ24538.1| DNA polymerase III subunit beta [Roseovarius sp. 217]
          Length = 372

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKLSIERGALLKAVSQAQSVVERRNTIPILANVLIEAEGNSVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DG+ ++   +   G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGSLVTLSDDGTSG-RLTVQAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHVSDADGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    + MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDGASDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + + V+     QAVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRMEVDAAEFAQAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N   A YV+MPMR+
Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372


>gi|49473789|ref|YP_031831.1| DNA polymerase III subunit beta [Bartonella quintana str. Toulouse]
 gi|49239292|emb|CAF25618.1| DNA polymerase III, beta chain [Bartonella quintana str. Toulouse]
          Length = 373

 Score =  385 bits (989), Expect = e-105,   Method: Composition-based stats.
 Identities = 165/387 (42%), Positives = 251/387 (64%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +TV+R+ +L+ LG   R++ER+NT+P+  +VL+ A+   +++KA+  ++E+T +  A+
Sbjct: 1   MHVTVDRNQLLKSLGRVHRVVERRNTVPILSNVLIDADKNGVQLKATDLDLEVTESFMAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV AHLLYDIVRKL DG++I    +    + +++  G ++F LQ  P+ +FP 
Sbjct: 61  VKQAGAITVPAHLLYDIVRKLLDGSEIVLSVDMNQASTMSVVSGCAHFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++ Y F L++S LK+L++ T FA++TEE RYYLNGI+FH+ ++  LKL  VATDGH
Sbjct: 121 SLPGQFGYRFSLSASSLKHLLDCTQFAISTEETRYYLNGIYFHVVDDGVLKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  + +  MP II+PRKAVGE+ ++LS + + +V V LSE++I  ++ S+  +
Sbjct: 181 RLAQVDMEAPSGVKDMPGIIIPRKAVGELQKLLSEEINDNVCVELSETKIRFSVGSVVFT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  N   AVDRVS +SS R +AVKL++   +L + 
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLIVNKQNFSSAVDRVSTISSDRGRAVKLTIEQGQLKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A + +   Y   P++I FN +YLL+I   +S      DE+VF L  + +   
Sbjct: 301 VHNPDSGSAEDQLAATYTSDPLEIGFNSRYLLDIAGQLSG-----DEMVFMLAEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D           NA YVLMP+R+
Sbjct: 356 IRDNDD---------ANALYVLMPIRV 373


>gi|119385559|ref|YP_916614.1| DNA polymerase III subunit beta [Paracoccus denitrificans PD1222]
 gi|119376154|gb|ABL70918.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222]
          Length = 372

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 230/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+D+++ +  A  ++ER+NTIP+  +VL++A    +  +A+  + EI    PA 
Sbjct: 1   MKFSIERADLVKAVSQAQSVVERRNTIPILANVLIEAAPEGVSFRATDLDTEIVDRAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L DI RKL DGA +    +   G  +++  G SNF L + P  +FP 
Sbjct: 61  VERPGATTVSAGMLNDIARKLPDGALVQLSLDAASG-RLSVQAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   ++VL+ L +++ FA++ EE RYYLNG++ H+   E+   L  VATDG
Sbjct: 120 MSSSEYGANFSAPAAVLRRLFDKSKFAISNEETRYYLNGVYMHVAQTEDGPGLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  + A    MP +IVPRK V E+ ++L   ++ + VS+SE+++     +++++
Sbjct: 180 HRLARIDAPLPAGAEDMPGVIVPRKTVAELRKLLDDDEAEIAVSVSETKVRFATPTITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPSGNARKLEVDAGDFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y + P++I FN KYL EI   I       +  VF  + S  +  
Sbjct: 300 VNAPDAGAADEELPVAYADEPLEIGFNAKYLHEIASQIE-----RENAVFLFNGSGDAAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +    +A YV+MPMR+
Sbjct: 355 IR---------EGGDTSAVYVVMPMRV 372


>gi|146309669|ref|YP_001174743.1| DNA polymerase III subunit beta [Enterobacter sp. 638]
 gi|145316545|gb|ABP58692.1| DNA polymerase III, beta subunit [Enterobacter sp. 638]
          Length = 366

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P  +FP
Sbjct: 61  QPHDAGATTVPARKFFDICRGLPEGAEIAVQLE---GDRILVRSGRSRFSLSTLPAIDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPIGVTLPN-HSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 295 NNPEQEEAEEILDVTYAGTEMEIGFNVSYVLDVLNALKC-----ENVRILLTDSVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 EDA---------ASQSAAYVVMPMRL 366


>gi|126734081|ref|ZP_01749828.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2]
 gi|126716947|gb|EBA13811.1| DNA polymerase III subunit beta [Roseobacter sp. CCS2]
          Length = 372

 Score =  384 bits (988), Expect = e-105,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+     A 
Sbjct: 1   MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDRASAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L +IVRKL DGA ++  ++   G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVAAVTLNEIVRKLPDGALVTLTEDGASG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDSDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    A M  +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDGAADMAGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+ +   +AVDRV+ +SS R +AVKL+L  DKL ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  ++S     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNTSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|83309736|ref|YP_420000.1| DNA polymerase III subunit beta [Magnetospirillum magneticum AMB-1]
 gi|82944577|dbj|BAE49441.1| DNA polymerase sliding clamp subunit [Magnetospirillum magneticum
           AMB-1]
          Length = 379

 Score =  384 bits (988), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 225/387 (58%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ L H   ++ER+ TIP+  +V L+   GLL + A+  +++I  A+PA 
Sbjct: 8   MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 67

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T  AH  Y+IVRKL DG+Q+    + E G ++ +  G S F L   P  +FP 
Sbjct: 68  VVRPGATTAPAHTFYEIVRKLPDGSQVEIEHDAESG-QLTLRSGRSKFSLACLPVEDFPV 126

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E  ++F L+++ LK L++RT FA++TEE RYYLNGI+ H    D    L AVATDG
Sbjct: 127 LSGGELPFTFSLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGVDVLRAVATDG 186

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+ + +  A MP IIVPRK V EI +++   D  + VSLSE+++        ++
Sbjct: 187 HRLARVEITLPSGAAGMPGIIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 246

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK L V+C +  QAVDRVS +S+ + +A+KL+L      ++
Sbjct: 247 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 306

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + + G A+E +   Y   P++I FN +YL++I+  +       D   F +  + S   
Sbjct: 307 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----DTARFAMADAASPTV 361

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R               A YVLMPMR+
Sbjct: 362 VREM---------TDGGAIYVLMPMRV 379


>gi|89069838|ref|ZP_01157173.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516]
 gi|89044639|gb|EAR50755.1| DNA polymerase III subunit beta [Oceanicola granulosus HTCC2516]
          Length = 372

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKFSIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGDGVQFRATDLDIEVVDRAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L +IVRKL DGA ++  ++   G  + I  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAAVTLNEIVRKLPDGALVTLAEDGGSG-RLQIMAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ E  +   L  VATDG
Sbjct: 120 MASSEYATNFTADAPVLRRLFDKSKFAISTEETRYYLNGVYMHVAEGEDGRALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +     +MP +IVPRK VGE+ ++L   +  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAALPEGAEEMPGVIVPRKTVGELRKLLDDDEMQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N K L V+ +   +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPANNAKRLEVDASEFAKAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  +DI FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGNAEEELAVAYGDEKLDIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  D           +A YV+MPMR+
Sbjct: 355 MREGDD---------TSAVYVVMPMRV 372


>gi|254515868|ref|ZP_05127928.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3]
 gi|219675590|gb|EED31956.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR5-3]
          Length = 367

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 210/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  +L+ L     ++ER+ T+PV  +VLL  +   L I  +  E+E+ G +   
Sbjct: 1   MKFRVSRDALLKPLNLVAGVVERRQTLPVLSNVLLNLDGDRLSITGTDLEVELVGRVNLE 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G IT+ A  L DI + L DGA +     +    +  +  G S F L + P  EFP
Sbjct: 61  SEGDAGEITLPARKLADICKSLPDGADLEISVSD---GKATVRSGRSRFTLATLPAREFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++    + F L    L+ L+ERT FAMA +++RYYLNG+++ +     +L AVATDGH
Sbjct: 118 NIEDSIGTHQFTLKQGQLRRLIERTGFAMAQQDVRYYLNGMYWELRAG--RLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+       +  +   +I+PRK V E+ R++ + D  V + L  + +       + + 
Sbjct: 176 RLAICTFPGTLKDLEDTQVILPRKGVLELSRLMQNDDEDVTIILGSNHLRATTTEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P + DK ++ + T LRQA  R +I+S+ + + V+L LS+  L +  
Sbjct: 236 KLVDGKFPDYERVLPRAADKIVQSSRTELRQAFTRTAILSNEKYRGVRLKLSNGSLEIVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ V Y+   ++I FN  YLL+++  +S      DE+ F L   NSS  +
Sbjct: 296 NNPEQEQAEENLPVNYSGDSLEIGFNVGYLLDVLGVLSG-----DEIRFSLSDPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 351 EETD---------GGDSLYVVMPMRL 367


>gi|253987485|ref|YP_003038841.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica subsp.
           asymbiotica ATCC 43949]
 gi|253778935|emb|CAQ82095.1| DNA polymerase III subunit beta [Photorhabdus asymbiotica]
          Length = 366

 Score =  384 bits (987), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +  L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMMARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L + P ++FP
Sbjct: 61  LPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYFSKNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       +EV   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNTLRC-----EEVRLLLTDAISSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          NA YV+MPMR+
Sbjct: 350 EDC---------ASHNAAYVVMPMRL 366


>gi|83950589|ref|ZP_00959322.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM]
 gi|83838488|gb|EAP77784.1| DNA polymerase III subunit beta [Roseovarius nubinhibens ISM]
          Length = 372

 Score =  383 bits (985), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKFSIERGILLKAVSQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS TVSA  L++IVRKL DGA ++   +   G  + +  G S+F L + P+ +FP 
Sbjct: 61  VERAGSTTVSAVTLHEIVRKLPDGALVTLTDDGAAG-RLAVEAGRSSFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MASSEYASNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSDGDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   D+ + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPDGAGDMPGVIVPRKTVGELRKLLDDDDAVIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|260428831|ref|ZP_05782808.1| DNA polymerase III, beta subunit [Citreicella sp. SE45]
 gi|260419454|gb|EEX12707.1| DNA polymerase III, beta subunit [Citreicella sp. SE45]
          Length = 372

 Score =  383 bits (984), Expect = e-104,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGNTVTFRATDLDIEVLDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA +    E+     + ++ G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGALV-QLSEDGGAGRLTVTAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ HI  +EE   L  VATDG
Sbjct: 120 MASSEYATNFTAKAEVLRKLFDKSKFAISTEETRYYLNGVYMHIADSEEGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  + +    MP +IVPRK VGE+ ++L   +  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAPLPSGAEAMPGVIVPRKTVGELRKLLDEDEMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y + P++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDDPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + +  +A YV+MPMR+
Sbjct: 355 MR---------EGSDTSAVYVVMPMRV 372


>gi|326793324|ref|YP_004311144.1| DNA polymerase III subunit beta [Marinomonas mediterranea MMB-1]
 gi|326544088|gb|ADZ89308.1| DNA polymerase III, beta subunit [Marinomonas mediterranea MMB-1]
          Length = 365

 Score =  383 bits (983), Expect = e-104,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 214/385 (55%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L+ L     ++ERK T+PV  +VL++  D +L +  S  E+E+ G +P  
Sbjct: 1   MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQVLTLTGSDLEVELVGQVPLD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G ITV A  L DI + L D A I F  + +   +  I  G S F L + P  EFP+
Sbjct: 61  DCQEGRITVPARKLVDICKSLPDSAVIEFSLDEQ---KAIIRSGRSRFSLSTLPADEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++ +   +  +A S ++ L++RT FAMA +++RYYLNG+ F + +  L++  VATDGHR
Sbjct: 118 IQDMQGDLTVNVAQSSVRRLIDRTGFAMANQDVRYYLNGMLFEVADGQLRV--VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D       +  +IVPRK V E+ R+LS  D  V++ +  + +   I+  + + +
Sbjct: 176 LATAIEDAQVS-GDLTQVIVPRKGVLELNRLLSDTDELVELKIGSNHVRATIDDYTFTSK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+DG+FP+Y  VIP +N+K +  +   LRQ   R SI+S+ + + V+L LS+  L +  +
Sbjct: 235 LVDGKFPDYHRVIPRNNEKMVIADRQELRQVFLRASILSNEKYRGVRLILSNGMLQVFAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A ES+ V Y    M++ FN  YLL+++  + +      EV   ++ SNSS  I 
Sbjct: 295 NPEQEEAEESVLVQYQGDGMEVGFNVGYLLDVLGVVDAQ-----EVRIAMNDSNSSALIE 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                +         A YV+MPMR+
Sbjct: 350 EAQSHA---------AQYVVMPMRL 365


>gi|83944867|ref|ZP_00957233.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633]
 gi|83851649|gb|EAP89504.1| DNA polymerase III subunit beta [Oceanicaulis alexandrii HTCC2633]
          Length = 372

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/387 (39%), Positives = 228/387 (58%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  +VL+ A+DG     A+  ++EI     AS
Sbjct: 1   MKLTIERAILLKALGHVQAVVERRNTIPILSNVLINASDGFARFTATDLDMEIVEEAEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G IT  AH LY+I RKL +G+Q++     +    + +S G S F L   P  +FP 
Sbjct: 61  VEREGLITAPAHTLYEIARKLPEGSQVTLELGGDD-PRILLSAGRSRFNLPILPPGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              E+   SF   +S +  L+++T FA++TEE RYYLNGI  H  E D +  L AVATDG
Sbjct: 120 MPSEDLAVSFTAPASEIARLIDKTKFAISTEETRYYLNGIHLHAAERDGRKTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE D+      MP++IVPRK + E+ R+L   D  V VS+SE +I   + +  ++
Sbjct: 180 HRLALAETDLPDGAMGMPAVIVPRKPIQELRRLLEDLDGDVDVSVSEGKIRFQLGAAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK +R++     QAVDRV+ +S  + ++VKLSL+  ++ +T
Sbjct: 240 SKLIDGTFPDYERVIPRGNDKVMRIDRAPFAQAVDRVATISQEKSRSVKLSLAPGQVTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NP+ G A E +   Y+   M I FN +YLL++   I       DE +F L  S S   
Sbjct: 300 VNNPESGAASEELVADYSADEMTIGFNARYLLDVASQIEG-----DEAIFELADSGSPTR 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +               +A YVLMP+R+
Sbjct: 355 VTD---------SGDKDAEYVLMPLRV 372


>gi|23014790|ref|ZP_00054590.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 372

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/387 (37%), Positives = 225/387 (58%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ L H   ++ER+ TIP+  +V L+   GLL + A+  +++I  A+PA 
Sbjct: 1   MKLTIERAALLKSLAHVQSVVERRTTIPILSNVKLEGRGGLLSLNATDMDLDIIEAVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T  AH  Y+IVRKL DG+Q+    + E G ++ +  G S F L   P  +FP 
Sbjct: 61  VVRPGATTAPAHTFYEIVRKLPDGSQVEIEFDAESG-QLTLRSGRSKFSLACLPVEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               +  +SF L+++ LK L++RT FA++TEE RYYLNGI+ H    D    L AVATDG
Sbjct: 120 LSGGDLPFSFTLSAAELKTLIDRTRFAISTEETRYYLNGIYLHAAASDGIDVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+ + +  A MP +IVPRK V EI +++   D  + VSLSE+++        ++
Sbjct: 180 HRLARVEITLPSGAAGMPGVIVPRKTVAEIRKLIDETDGEITVSLSETKLKFAFGDAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK L V+C +  QAVDRVS +S+ + +A+KL+L      ++
Sbjct: 240 SKLIDGTFPDYERVIPADNDKVLVVDCKSFAQAVDRVSAISTEKSRAIKLALEKGSATLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + + G A+E +   Y   P++I FN +YL++I+  +       +   F +  + S   
Sbjct: 300 ASSAENGSAVEEIEADYTSTPLEIGFNSRYLMDILAQVEG-----ETARFAMADAASPTV 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R               A YVLMPMR+
Sbjct: 355 VREM---------TDGGAIYVLMPMRV 372


>gi|261346741|ref|ZP_05974385.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541]
 gi|282565141|gb|EFB70676.1| DNA polymerase III, beta subunit [Providencia rustigianii DSM 4541]
          Length = 366

 Score =  382 bits (982), Expect = e-104,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L++  +  E+E+   +P +
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVKEGALQLTGTDLEMEMMANVPLT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I     ++    + +  G S F L + P ++FP
Sbjct: 61  REHEVGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F    + L+   V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGQLLR--TVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMDIGQELP-SHSVIVPRKGVIELMRLLDGGDAPLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S     + V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGGEMEIGFNVSYILDVLNTLKS-----ENVTLFLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 ED---------SASRSAVYVVMPMRL 366


>gi|87121028|ref|ZP_01076920.1| DNA polymerase III, beta chain [Marinomonas sp. MED121]
 gi|86163866|gb|EAQ65139.1| DNA polymerase III, beta chain [Marinomonas sp. MED121]
          Length = 365

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 132/385 (34%), Positives = 211/385 (54%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L+ L     ++ERK T+PV  +VLL+  D  L +  S  E+E+ G I   
Sbjct: 1   MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLLEVKDNELTLTGSDLEVELVGHIQLD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G ITV A  L DI + L D A I    ++   T   I  G S F L + P  EFP+
Sbjct: 61  ECQEGRITVPARKLMDICKSLPDSAVIELSVDD---TRAIIRSGRSRFTLSTLPADEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++ +   S  +A + ++ L+ERT FAMA +++RYYLNG+ F + +  L++  V+TDGHR
Sbjct: 118 IQDMQGDLSVVVAQNSVRRLIERTGFAMANQDVRYYLNGMLFEVADGQLRV--VSTDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D       +  +IVPRK V E+ R+LS  D +V++ +  + I   +     + +
Sbjct: 176 LATAIEDAQVS-GDLTQVIVPRKGVLELNRLLSDTDETVELQIGANHIRAKVADYIFTSK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP +NDK +  +   LRQ   R SI+S+ + + V+L L++  L +  +
Sbjct: 235 LVEGKFPDYHRVIPRNNDKIVIADRLELRQVFLRASILSNEKYRGVRLILTNGMLQVFAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A ES+ V Y    +++ FN  YLL+++  ++S      EV   L+ + +S  + 
Sbjct: 295 NPEQEEAEESVLVQYQGDDLEVGFNVSYLLDVLGVVNSQ-----EVRISLNDATASALVE 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D  +         A YV+MPMR+
Sbjct: 350 EADSHA---------AQYVVMPMRL 365


>gi|212712613|ref|ZP_03320741.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM
           30120]
 gi|212684829|gb|EEB44357.1| hypothetical protein PROVALCAL_03708 [Providencia alcalifaciens DSM
           30120]
          Length = 366

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LL   +G L++  +  E+E+   +P +
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLHVKEGALQLTGTDLEMEMMANVPLT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ TV A   +DI R L +G++I     ++    + +  G S F L + P ++FP
Sbjct: 61  REHEIGATTVPARKFFDIWRGLPEGSEIQVELNDD---RLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S+LK L+E T F+MA +++RYYLNG+ F      L+   V+TDGH
Sbjct: 118 NLDDWQSEVEFSLPQSILKRLIEATQFSMAHQDVRYYLNGMLFETEGNMLR--TVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +DI  ++    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMDIGQELP-SHSVIVPRKGVMELMRLLDGGDALLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L  S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEARCDLLKQAFSRAAILSNEKFRGVRLFFSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ + S     + V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVNYQGGEMEIGFNVSYILDVLNALKS-----ENVTLFLTDAVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 350 ED---------SASRSAVYVVMPMRL 366


>gi|284007064|emb|CBA72339.1| DNA polymerase III subunit beta [Arsenophonus nasoniae]
          Length = 366

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 131/386 (33%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ER  +L+ L      +  + T+P+  ++LLQ ++ +L +  +  E+E+   +   
Sbjct: 1   MKFTIEREQLLKPLQQVSGPLGGRPTLPILGNLLLQVSENILSLTGTDLEVEMVAKVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITV A   +DI R L DGA+I    E   G  + +  G S F L + P ++FP
Sbjct: 61  QPGESGSITVPARKFFDIWRGLPDGAEIKVTLE---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + LK L+E T F+MA +++RYYLNG+ F    ++L+   VATDGH
Sbjct: 118 NLDDWQSEVEFELPQATLKRLIEATQFSMAHQDVRYYLNGMLFETEGQELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  ++I   +    S+IVPRK V E +R+L S D S+K+ +  + I  ++     + 
Sbjct: 176 RLAVCSLNIDKDLP-THSVIVPRKGVVEFMRLLDSSDESLKLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLTADCDKLKQAFSRAAILSNEKFRGVRLYISENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  ++ E ++V Y    ++I FN  Y+L++++ +       ++V   L  SNSSV I
Sbjct: 295 NNPEQEESEEIVDVNYQSPMIEIGFNVSYILDVLNTLKC-----EQVNLLLTDSNSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++         A YV+MPMR+
Sbjct: 350 EDAATNA---------AAYVVMPMRL 366


>gi|114762141|ref|ZP_01441609.1| DNA polymerase III subunit beta [Pelagibaca bermudensis HTCC2601]
 gi|114545165|gb|EAU48168.1| DNA polymerase III subunit beta [Roseovarius sp. HTCC2601]
          Length = 372

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 147/387 (37%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKVSIERATLLKAVSQAQSVVERRNTIPILANVLIEAEGDTVTFRATDLDIEVLDRAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA +    ++     + ++ G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGALV-QLADDSAAGRLTVTAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   +  L+ L +++ FA++TEE RYYLNG++ H++  EE   L  VATDG
Sbjct: 120 MASSEYATNFSAKAETLRKLFDKSKFAISTEETRYYLNGVYMHVSDSEEGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAPVPEGAEAMPGVIVPRKTVGELRKLLDDDDMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+ T   +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTGNTRRLEVDATEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y + P++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDEPLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + +  +A YV+MPMR+
Sbjct: 355 MR---------EGSDTSAVYVVMPMRV 372


>gi|83591342|ref|YP_425094.1| DNA polymerase III subunit beta [Rhodospirillum rubrum ATCC 11170]
 gi|83574256|gb|ABC20807.1| DNA polymerase III, beta subunit [Rhodospirillum rubrum ATCC 11170]
          Length = 372

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 224/387 (57%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  +V ++  +    + A+  ++EI   + A+
Sbjct: 1   MKLTIERTALLKSLGHVQSVVERRNTIPILSNVRMETGESGFSLNATDMDLEIVETVTAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ T  AH LYDIVRKL DG+Q+    +   G ++ +  G S F L   P  +FP+
Sbjct: 61  TLAPGATTAPAHTLYDIVRKLPDGSQVELSYDGNDG-QLVLKAGRSRFSLSCLPVEDFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E+ +SF L ++ L+ L++RT FA++TEE RYYLNGI+ H  E      L AVATDG
Sbjct: 120 LSAGEFSHSFSLPATDLRGLIDRTRFAISTEETRYYLNGIYLHATESAGVPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA AE+ + A  A MP +IVPRK VGE+ +++      + V LSE +I  + +   ++
Sbjct: 180 HRLARAEIPLPAGAAGMPGVIVPRKTVGELRKLIEETGMDITVGLSEQKIRFDFDETRLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK L V+C    QA DRVS +S+ + +A+K++++   + ++
Sbjct: 240 SKLIDGTFPDYERVIPTENDKVLEVDCKLFAQAADRVSAISTEKSRAIKVAVAKGTMTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G A+E +   Y    ++I FN +YLL+I+  +         V      + S   
Sbjct: 300 ASSPDAGSAVEEIEAAYQSTSLEIGFNSRYLLDILGQVEG-----GSVRLTFADAASPTV 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR              +A YVLMPMR+
Sbjct: 355 IRDV---------ADASAVYVLMPMRV 372


>gi|254461783|ref|ZP_05075199.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium
           HTCC2083]
 gi|206678372|gb|EDZ42859.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium
           HTCC2083]
          Length = 372

 Score =  382 bits (981), Expect = e-104,   Method: Composition-based stats.
 Identities = 154/387 (39%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ + HA  ++ER+NTIP+  +VL++A    +  +A+  +IE+   + A 
Sbjct: 1   MKISIERATLLKAVSHAQSVVERRNTIPILANVLIEAEGNDVRFRATDLDIEVVDKVEAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L +IVRKL DGAQ++   +   G  + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSATTLNEIVRKLPDGAQVTLTDDGTSG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   +SVL+ L +++ FA++TEE RYYLNG++ HI+  E    L  VATDG
Sbjct: 120 MATSEYSANFSAQASVLRRLFDKSKFAISTEETRYYLNGVYMHISDAEGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    ++MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPENASEMPGVIVPRKTVGELRKLLDEDDMQIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|146276061|ref|YP_001166220.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC
           17025]
 gi|145554302|gb|ABP68915.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC
           17025]
          Length = 372

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 150/387 (38%), Positives = 231/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P  +FP 
Sbjct: 61  VERPGATTVSAVMLHEIVRKLPDGALVG-LSEDAASGRLTVTAGRSVFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VL+ L ++  FA++TEE RYYLNG+F H+   EE   L  VATDG
Sbjct: 120 MASSEYSSNFTAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      M  +IVPRK V E+ ++L   ++ +KVS+SE+++      ++M+
Sbjct: 180 HRLARIDAPLPEGAEGMAGVIVPRKTVNELRKLLDDDEAQIKVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTGNARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|163797311|ref|ZP_02191264.1| ApaG [alpha proteobacterium BAL199]
 gi|159177402|gb|EDP61958.1| ApaG [alpha proteobacterium BAL199]
          Length = 373

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 158/387 (40%), Positives = 239/387 (61%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT++R+ +L+ L H   ++ER+NTIP+  +VLL+A DG L + A+  ++++  ++  S
Sbjct: 1   MKITIDRAALLKPLAHVQSVVERRNTIPILANVLLRAADGTLSLTATDMDLDVVESVGCS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G  TV AH LY+IVRKLQDG+++      + G  + I  G SNF L + P  EFP+
Sbjct: 61  VDQPGQTTVPAHTLYEIVRKLQDGSEVELTAVGDSG-RMTIRAGRSNFSLPTLPMEEFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
              +    SF L+++  K L++RT FA++TEE RYYLNGIF H     +   L AVATDG
Sbjct: 120 LSGDTLPTSFVLSAADAKTLIDRTRFAISTEETRYYLNGIFLHEAKAGDVAVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++ +    A MP++IVPRKAV EI +++   D  V+VSLSE+++    ES  ++
Sbjct: 180 HRLARVQMPLPTGAAGMPAVIVPRKAVQEIRKLIEETDGDVQVSLSENKLRFAFESSVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  NDK LRV  +  ++AVDRV+ +S+ + ++VKLSL+S  L ++
Sbjct: 240 TKLIDGTFPDYERVIPTGNDKMLRVESSMFKRAVDRVATISTEKSRSVKLSLTSGTLTLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD  +A E ++V Y    ++I FN +YL++I D I        + VF +  + S   
Sbjct: 300 ANSPDNAQATEEVDVDYAAAAIEIGFNSRYLMDIADQIDE----GSKAVFAMADAASPTV 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +  D            YVLMPMR+
Sbjct: 356 VTDESDD---------GTLYVLMPMRV 373


>gi|163745036|ref|ZP_02152396.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45]
 gi|161381854|gb|EDQ06263.1| DNA polymerase III subunit beta [Oceanibulbus indolifex HEL-45]
          Length = 372

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+   + A 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKVAAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA LL++IVRKL DGA I+   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVSATLLHEIVRKLPDGALINLTADTAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ HI   E    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYLHIADAESGKALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + ++    A+MP +IVPRK VGE+ ++L   +  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAEMPEGAAEMPGVIVPRKTVGELRKLLDDDEMEIAVSVSETKIRFATPGITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|290473096|ref|YP_003465957.1| DNA polymerase III subunit beta [Xenorhabdus bovienii SS-2004]
 gi|289172390|emb|CBJ79157.1| DNA polymerase III, beta-subunit [Xenorhabdus bovienii SS-2004]
          Length = 366

 Score =  381 bits (980), Expect = e-104,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +  L +  +  E+E+   +   
Sbjct: 1   MKFIIEREQLLKPLQQVSSPLGGRPTLPILGNLLLQVTESSLLLTGTDLEMEMKARVALT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L + P S+FP
Sbjct: 61  QPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  ++I   +    S+IVPRK V E++R+L   DS +++ +  + I  ++     + 
Sbjct: 176 RLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYLSENQLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       ++V   L  + SSV I
Sbjct: 295 NNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDVLNALKC-----EQVSLLLTDATSSVKI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                           A YV+MPMR+
Sbjct: 350 EN---------SASQAATYVVMPMRL 366


>gi|54307246|ref|YP_128266.1| DNA polymerase III subunit beta [Photobacterium profundum SS9]
 gi|46911666|emb|CAG18464.1| Putative DNA polymerase III, beta chain [Photobacterium profundum
           SS9]
          Length = 366

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  +G L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L DGA+I+   E   G  + I  G S + L + P ++FP
Sbjct: 61  ADFEVGAVTVPSRKFLDICRGLPDGAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    +  L++ T F+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIEDWQSDVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D+ AQ      IIVPRK V E++R+L + ++ V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDL-AQELTTKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K +  +C  LR+A  R +I+S+ + + V+++LS  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+S  +
Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 350 EDCANDE---------AMYVVMPIRL 366


>gi|300021541|ref|YP_003754152.1| DNA polymerase III subunit beta [Hyphomicrobium denitrificans ATCC
           51888]
 gi|299523362|gb|ADJ21831.1| DNA polymerase III, beta subunit [Hyphomicrobium denitrificans ATCC
           51888]
          Length = 372

 Score =  381 bits (979), Expect = e-104,   Method: Composition-based stats.
 Identities = 155/387 (40%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ER ++L+ L H   ++ER+ TIP+  +++L+A+   L  KA+  E E++ ++ A 
Sbjct: 1   MRLEIERGELLKALSHVTSVVERRTTIPILSNIMLKASGETLMFKATDLEREVSESVGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++TV AH+L+DIVRKL DGA+I   ++ E    + I+ G S F LQ+    +FP 
Sbjct: 61  VSTPGTLTVPAHVLHDIVRKLPDGAEIEMKRDGEK-ERLTITSGHSRFSLQTLSAEDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               E  + F + +  LK L+++T FA++TEE RYYLNGIF H  E      L AVATDG
Sbjct: 120 LAVGEIGHEFTIEAGDLKRLIDKTRFAISTEETRYYLNGIFLHPAETAGVKTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+ +      MP +IVPRK V E+ R+L    + V V +S++++   I  + ++
Sbjct: 180 HRLAQVELPLPKGAEGMPGVIVPRKTVHELARLLEDSSAKVNVGVSQTKVRFEIGPVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKE++V   + + AVDRVS ++S R +AVKL+++ DKL +T
Sbjct: 240 SKLIDGTFPDYSRVIPHNNDKEMKVPNASFKSAVDRVSTIASERGRAVKLNVAKDKLILT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NP+ G A E + V Y+  P++I FN +YLL+I D + S     ++  F L    S   
Sbjct: 300 VNNPEGGSATEEIPVGYSAGPLEIGFNARYLLDIADQLES-----EDARFLLADPGSPTM 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R              NA YVLMPMR+
Sbjct: 355 VRD---------GGDGNALYVLMPMRV 372


>gi|152994045|ref|YP_001338880.1| DNA polymerase III subunit beta [Marinomonas sp. MWYL1]
 gi|150834969|gb|ABR68945.1| DNA polymerase III, beta subunit [Marinomonas sp. MWYL1]
          Length = 365

 Score =  381 bits (979), Expect = e-103,   Method: Composition-based stats.
 Identities = 134/385 (34%), Positives = 213/385 (55%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L+ L     ++ERK T+PV  +VL++  D LL +  S  E+E+ G +P  
Sbjct: 1   MKFSVVRETLLKPLQLVAGVVERKQTMPVLANVLVEVKDQLLTLTGSDLEVELVGHVPLD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G ITV A  L DI + L D A I F  +++   +  I  G S F L + P  EFP+
Sbjct: 61  ECEEGRITVPARKLMDICKSLPDSAVIEFTLDDQ---KAVIRSGRSRFSLSTLPADEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++ +   +  +A + ++ L++RT FAMA +++RYYLNG+   + +  L++  VATDGHR
Sbjct: 118 IQDMQGDLTVSIAQNSVRRLIDRTGFAMANQDVRYYLNGMLLEVADGQLRV--VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D       +  +IVPRK V E+ R+L+  D  V++++  + I   +     + +
Sbjct: 176 LATAVEDAQVS-GDLTQVIVPRKGVLELNRLLNDTDEVVELTIGTNHIRAKVAEYVFTSK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+DG+FP+Y  VIP +N+K +  +   LRQ   R SI+S+ + + V+L LS+  L +  +
Sbjct: 235 LVDGKFPDYHRVIPRNNEKIVIADRLELRQVFLRASILSNEKYRGVRLILSNGMLQVFAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A ES+ V Y    M++ FN  YLL+++  + S      EV   L+ SNSS  I 
Sbjct: 295 NPEQEEAEESVLVQYQGDNMEVGFNVGYLLDVLGVVDSQ-----EVRLSLNDSNSSALIE 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                +         A YV+MPMR+
Sbjct: 350 EAQSHA---------AQYVVMPMRL 365


>gi|209966326|ref|YP_002299241.1| DNA polymerase III subunit beta [Rhodospirillum centenum SW]
 gi|209959792|gb|ACJ00429.1| DNA polymerase III, beta subunit [Rhodospirillum centenum SW]
          Length = 374

 Score =  381 bits (978), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/391 (37%), Positives = 230/391 (58%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ER+ +L  LGH   ++ER+NTIP+  +V+L+A +G L + A+  ++EI  ++PA 
Sbjct: 1   MKITIERAALLRSLGHVQSVVERRNTIPILSNVMLRAENGELSLTATDMDLEIVESVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS T  AH LYDI RKL DG+Q+     +  G  + +  G S F L + P  ++P+
Sbjct: 61  IARPGSATAPAHTLYDIARKLPDGSQVEL---DSTGDMLTLRSGRSQFKLGTLPVDDYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN------EEDLKLCAV 174
               +  + F L+++ LK L++RT FA++TEE RYYLNGIF H +       E   L AV
Sbjct: 118 MSGGDMGHRFSLSAADLKALIDRTRFAISTEETRYYLNGIFLHASTARGAGGETPVLRAV 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRLA  E+ +    A +P +I+PRKAV E+ ++L      ++V LS++++    ++
Sbjct: 178 ATDGHRLARVEMPLPEGAAGIPGVIIPRKAVLEVRKLLDEAADRIEVQLSDTKVRFAFDA 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           ++++ +LIDG FP+Y+ VIP  NDK L V+      AVDRV+ +S+ + +AVKLSL    
Sbjct: 238 ITLTSKLIDGTFPDYERVIPTGNDKVLEVDPRLFAGAVDRVATISTEKSRAVKLSLDRGV 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  +P+ G A E + V Y+   ++I FN +YLL+I   I       +   F +  + 
Sbjct: 298 LTLSASSPEAGSATEELEVVYDAPALEIGFNSRYLLDITQQIEG-----EGARFTMADAG 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   +R              +A YVLMPMR+
Sbjct: 353 SPTLVRDV---------ADASALYVLMPMRV 374


>gi|84514653|ref|ZP_01002017.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53]
 gi|84511704|gb|EAQ08157.1| DNA polymerase III subunit beta [Loktanella vestfoldensis SKA53]
          Length = 372

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 151/387 (39%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IEI    PA 
Sbjct: 1   MKFSIERAVLLKAVAQAQSVVERRNTIPILANVLIEAQGDEVHFRATDLDIEIVDKAPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+ TVSA  L +IVRKL DGA ++  +E+  G  + I  G SNF L + P+ +FP 
Sbjct: 61  VDRAGATTVSAVTLNEIVRKLPDGALVTLTEESATG-RLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               +Y  +F   + VL+ L +++ FA++TEE RYYLNG++ H+   E    L  VATDG
Sbjct: 120 MASSDYAANFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + ++      M  +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAELPMGAENMAGVIVPRKTVGELRKLLDDDDMKIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDASEFARAVDRVATVSSERSRAVKLSLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD G A E + V Y++  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNSPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAIYVVMPMRV 372


>gi|149912811|ref|ZP_01901345.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b]
 gi|149813217|gb|EDM73043.1| DNA polymerase III, beta subunit [Roseobacter sp. AzwK-3b]
          Length = 372

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKLSIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTVQFRATDLDIEVVDKAPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A +L++IVRKL DGA ++   ++     + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVNAVMLHEIVRKLPDGALVT-LTDDSATGRLTVEAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VL  L +++ FA++TEE RYYLNG++ H+   E    L  VATDG
Sbjct: 120 MASSEYASNFSAPAPVLLRLFDKSKFAISTEETRYYLNGVYMHVADAEGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPIGAEDMPGVIVPRKTVGELRKLLEDDDMKIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+     +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDAAEFAKAVDRVATVSSERSRAVKLTLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|307543591|ref|YP_003896070.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581]
 gi|307215615|emb|CBV40885.1| DNA polymerase III subunit beta [Halomonas elongata DSM 2581]
          Length = 367

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 203/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           MK ++ R  +L  L     ++ER+ T+PV  +VL+Q     + +  +  E+E+ G  + +
Sbjct: 1   MKFSISREALLRPLTLVAGVVERRQTLPVLSNVLIQVEQDQVSLTGTDLEVELIGRTVAS 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  GS TV A  L DI + L D A+I    E+       +  G S F L + P +EFP
Sbjct: 61  QVDEAGSATVPARKLMDICKSLPDQAEIQLALED---NRAVLRSGRSRFTLSTLPVAEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    LK L++ T FAMA +++RYYLNG+        ++  AVATDGH
Sbjct: 118 NIEDGQSSVELSLPRGTLKRLIDATSFAMAQQDVRYYLNGMLLEFGTNLVR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAVA      Q+     +IVPRK + E++R+L   +  V ++L  + I  +    + + 
Sbjct: 176 RLAVASRSAEIQVEPSQKLIVPRKGIMELVRLLDDGEDPVSLTLGSTHIRAHTGDFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK L    T LRQ + R +I+S+ + + V+L+L    L +  
Sbjct: 236 KLVDGKFPDYERVVPKGGDKVLIAERTELRQVLSRTAILSNEKYRGVRLNLEEGNLRVMA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ V Y    M+I FN  YL++++  +      +D V   L   NSS  +
Sbjct: 296 NNPEQEEAEENVGVEYTGPAMEIGFNVGYLVDVLSVLD-----EDRVQLTLADPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 351 EEP---------GGGDALYVVMPMRL 367


>gi|119475237|ref|ZP_01615590.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2143]
 gi|119451440|gb|EAW32673.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2143]
          Length = 368

 Score =  380 bits (977), Expect = e-103,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 211/387 (54%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +L+ L     ++ER+ T+P+  +VLL+     L I  +  E+E+ G +   
Sbjct: 1   MKFVISREALLKPLNLVAGVVERRQTLPILSNVLLELEGNQLSITGTDLEVELVGRVVLD 60

Query: 61  V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +  G ITV A  L DI + L DG++I F ++++    V I  G S F L +   S+F
Sbjct: 61  QAPETGGEITVPARKLADICKSLPDGSEIEFTQDDQ---RVIIRSGRSRFTLSTLAASDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +E      F +    LK L++RT FAMA +++RYYLNG+ + +    L++  VATDG
Sbjct: 118 PNVEESPGSQDFTVKQGDLKRLIDRTSFAMAQQDVRYYLNGMLWEVQSGQLRV--VATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    +  +   +I+PRK V E+ R++  +   V++ +  + I    +  + +
Sbjct: 176 HRLALCTLATSIETTENLQVILPRKGVVELARLMMKESDDVRLVIGSNHIRATTDEYTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG+FP+Y  V+P ++ K +  +   LRQA  R +I+S+ + + V+L LS+D L + 
Sbjct: 236 SKLVDGKFPDYDRVLPKASTKTIFGSRDELRQAFSRTAILSNEKYRGVRLLLSNDTLQIV 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    ++I FN  YLL+++  +       + +   L  +NSS  
Sbjct: 296 ANNPEQEEAEEIVSVDYQGESLEIGFNVSYLLDVLGVLKG-----ETIKLSLADANSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   ++          ++ YV+MPMR+
Sbjct: 351 LEESEE---------GDSMYVVMPMRL 368


>gi|56695075|ref|YP_165422.1| DNA polymerase III subunit beta [Ruegeria pomeroyi DSS-3]
 gi|56676812|gb|AAV93478.1| DNA polymerase III, beta subunit [Ruegeria pomeroyi DSS-3]
          Length = 372

 Score =  380 bits (976), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A     + +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVAQAQSVVERRNTIPILANVLIEAEGEGAQFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ TVSA  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  IERAGATTVSATTLHEIVRKLPDGALVTLTADAAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MASSEYQSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+ A    MP +IVPRK VGE+ ++L   +  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPAGATDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+ +   +AVDRV+ +SS R +AVKL L  DKL ++
Sbjct: 240 SKVIDGTFPDYTRVIPQANTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDKLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y++  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDQSAVYVVMPMRV 372


>gi|226326919|ref|ZP_03802437.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198]
 gi|225204756|gb|EEG87110.1| hypothetical protein PROPEN_00779 [Proteus penneri ATCC 35198]
          Length = 367

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 126/387 (32%), Positives = 214/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LL+  +  L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMVARVNLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+IS   +   G  + +  G S F L + P S+FP
Sbjct: 61  QSHEIGATTVPARKFFDIWRGLPEGAEISVELD---GDRLLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+ +L  VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLAV  +DI   +    S+IVPRK V E++R+L    +SS+++ +  + I  ++     +
Sbjct: 176 RLAVCSMDIGQSLPG-HSVIVPRKGVIELMRLLDGGGESSLQLQIGSNNIRAHVGDFIFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P +  K +   C  L+QA  R +I+S+ + + V+++L+S +L +T
Sbjct: 235 SKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTSGQLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  YLL++++ +       +EV   L  + SSV 
Sbjct: 295 ANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKC-----EEVKLLLTDAVSSVQ 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +      +         A YV+MPMR+
Sbjct: 350 VENVASSA---------AAYVVMPMRL 367


>gi|126460790|ref|YP_001041904.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides ATCC
           17029]
 gi|332559820|ref|ZP_08414142.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N]
 gi|126102454|gb|ABN75132.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides ATCC
           17029]
 gi|332277532|gb|EGJ22847.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides WS8N]
          Length = 372

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P  +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGALVG-LSEDPASGRLTVTAGRSVFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F+  + VL+ L ++  FA++TEE RYYLNG++ H+   EE   L  VATDG
Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGPVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   +  + VS+SE+++      ++M+
Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|311696594|gb|ADP99467.1| DNA polymerase III, beta chain [marine bacterium HP15]
          Length = 367

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  +L  L     ++E+K T+PV  +VLL A D  L +  +  E+E+   + P 
Sbjct: 1   MKLTISRESLLTPLQSIAGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARVTPV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G ITV A  L DI R L D A +    E   G  +++  G S+F L + P   FP
Sbjct: 61  HVDQPGRITVPARKLSDISRALGDEAPMELSLE---GDRLHLRCGASHFTLSTLPAEHFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++E+  +  EL    L  +++ T FAMA +++RYYLNG+   ++++ ++   VATDGH
Sbjct: 118 NVEDEDESFRLELPQKELGRMLDATAFAMAQQDVRYYLNGLLLEVDKDHVR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A +++     ++  +IVPRK V E+ R+L   ++ V + + ++ +   + S + + 
Sbjct: 176 RLAMAHLELATNCPELRQVIVPRKGVLELARLLDDVETPVTLVIGDNHLRATVGSYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  VIP   DK +  +   L+  + R  I+S   I+ V+L+L+S++L +  
Sbjct: 236 KLIEGKFPDYNRVIPRGGDKIVLADRATLKNTLQRAGILSHENIRGVRLNLASNELQVFA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +++ V Y    + I FN  YL+++++ +      +D+V   L + NSS  I
Sbjct: 296 NNPDQEQAEDALPVDYQGESLQIGFNVGYLVDVMNALD-----EDQVKITLSNPNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +         N     YV+MPMR+
Sbjct: 351 EAQ---------NDNRCLYVVMPMRL 367


>gi|90413731|ref|ZP_01221719.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK]
 gi|90325200|gb|EAS41697.1| DNA polymerase III subunit beta [Photobacterium profundum 3TCK]
          Length = 366

 Score =  379 bits (975), Expect = e-103,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  +G L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVSGALGGRPSLPILGNILLKVEEGYLSMTGTDLEVELIAKLALE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L D A+I+   E   G  + I  G S + L + P ++FP
Sbjct: 61  ADFEIGAVTVPSRKFLDICRGLPDSAKIAVTLE---GDRILIRSGRSRYSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    +  L++ T F+MA +++RYYLNG+ F  +   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEFTLPQGRMSQLIQSTQFSMAHQDVRYYLNGMLFETDGSHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D+  ++A    IIVPRK V E++R+L + ++ V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDLAQELA-TKQIIVPRKGVLELVRLLDNAEAMVDIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K +  +C  LR+A  R +I+S+ + + V+++LS  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKFVEASCDELRKAFSRAAILSNEKFRGVRVNLSKGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+S  +
Sbjct: 295 NNPEQEEAEEFLDVDYQGDDLEIGFNVSYVLDVLNTLKC-----DQVRLSLTDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 350 EDCANDE---------AMYVVMPIRL 366


>gi|94502202|ref|ZP_01308697.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65]
 gi|94425663|gb|EAT10676.1| DNA polymerase III subunit beta [Oceanobacter sp. RED65]
          Length = 367

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T+ R  +L+ L     ++ER+ T+PV  +VLL+     L +  +  E+E+ G+    
Sbjct: 1   MKLTITREALLKPLQLVAGVVERRQTLPVLSNVLLEVKGDQLSLTGTDLELELIGSATLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ITV A  L DI + L D + I   +++    +V +  G S F L S P +EFP
Sbjct: 61  EPGVDGAITVPAKKLMDICKSLPDQSTIEISQDDH---KVQLQTGRSKFVLSSLPANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E      +  + L+ +++RT FAMA +++RYYLNG+   +  ++L+  AVATDGH
Sbjct: 118 NIDDIEAQAQVMVPQTQLRRIIDRTAFAMAQQDVRYYLNGMLIEVKPDELR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   V +   IA    +IVPRKAV E+ ++L   +SSV++SLS + +   +   + + 
Sbjct: 176 RLATCGVPVELDIADRMQVIVPRKAVLELAKLLMDPESSVELSLSNNHVRAKVGDYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ VIP + +K L  +   LRQ   R +I+S+ + + V+L L +D L +  
Sbjct: 236 KLVDGKFPDYERVIPRNGNKTLIADRQALRQVFQRTAILSNEKYRGVRLLLENDNLQVVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A ES+ V +    ++I FN  YL +++  +       D++   L  +NSS  +
Sbjct: 296 NNPEQEQAEESIGVEFQGEMLEIGFNVSYLQDVLSVLDG-----DDMKMTLADANSSAVM 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           ++ YV+MPMR+
Sbjct: 351 EEVE---------GGDSLYVVMPMRL 367


>gi|110677617|ref|YP_680624.1| DNA polymerase III subunit beta [Roseobacter denitrificans OCh 114]
 gi|109453733|gb|ABG29938.1| DNA polymerase III, beta subunit [Roseobacter denitrificans OCh
           114]
          Length = 372

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 240/387 (62%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVTFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA ++   ++ +G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSATTLHEIVRKLPDGALVTLTADSAIG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F + + VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MATSEYQSNFSVKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADADGGHVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L + + ++ VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPEAANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372


>gi|77464921|ref|YP_354425.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides 2.4.1]
 gi|77389339|gb|ABA80524.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides 2.4.1]
          Length = 372

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P  +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGALVG-LSEDPASGRLTVTAGRSVFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F+  + VL+ L ++  FA++TEE RYYLNG++ H+   EE   L  VATDG
Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVYMHVATGEEGSVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   +  + VS+SE+++      ++M+
Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|221640842|ref|YP_002527104.1| DNA polymerase III subunit beta [Rhodobacter sphaeroides KD131]
 gi|221161623|gb|ACM02603.1| DNA polymerase III, beta subunit [Rhodobacter sphaeroides KD131]
          Length = 372

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +G A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGALLKAVGQAQSVVERRNTIPILANVLIEAEGDTVSFRATDLDIEVVDRTPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DGA +    E+     + ++ G S F L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGALVG-LSEDPASGRLTVTAGRSVFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F+  + VL+ L ++  FA++TEE RYYLNG+F H+   EE   L  VATDG
Sbjct: 120 MASSEYSSTFKAPAPVLRRLFDKAKFAISTEETRYYLNGVFMHVATGEEGPVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   +  + VS+SE+++      ++M+
Sbjct: 180 HRLARIDAALPEGAQGMPGVIVPRKTVNELRKLLDDDEVEIAVSVSETKVRFATPQITMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYSRVIPTANARRLEVDAQEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|92112138|ref|YP_572066.1| DNA polymerase III subunit beta [Chromohalobacter salexigens DSM
           3043]
 gi|91795228|gb|ABE57367.1| DNA polymerase III, beta subunit [Chromohalobacter salexigens DSM
           3043]
          Length = 367

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 202/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           M+ T+ R  +L  L     ++ER+ T+PV  +VLLQ  D  L +  +  E+E+ G   P 
Sbjct: 1   MRFTITREALLRPLSLVAGVVERRQTLPVLSNVLLQVQDSQLALTGTDLEVELIGRTTPH 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  GS TV A  L DI + L +   I+F  E        +  G S F L + P +EFP
Sbjct: 61  HVDEPGSATVPARKLMDICKSLPEQTDITFTLEE---GRAILRAGRSRFTLSTLPVAEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +   +  LA   LK+L++ T FAMA +++RYYLNG+        ++   VATDGH
Sbjct: 118 NIEGSQSDTTLTLARGTLKHLIDATSFAMAQQDVRYYLNGMLLEFGHHLVR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV       ++     +IVPRK + E+ R+L   D  V++++  + +       + + 
Sbjct: 176 RLAVCARSADVEVEPSQKLIVPRKGILELARLLDGSDEPVELTIGGTHLRAQTGDFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y  VIP   DK +      LRQ + R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGKFPDYDRVIPRGGDKVVIAERGELRQVLSRTAILSNEKYRGVRLNLEENNLRVTA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ + Y+   +++ FN  YL++++  + +     D V   L   NSS  +
Sbjct: 296 NNPEQEEAEENVAIEYDGGALEVGFNVGYLVDVLGVLDA-----DRVQMTLSDPNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 351 EEP---------GGGDAMYVVMPMRL 367


>gi|260574426|ref|ZP_05842430.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2]
 gi|259023322|gb|EEW26614.1| DNA polymerase III, beta subunit [Rhodobacter sp. SW2]
          Length = 372

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ L  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKALSQAQSVVERRNTIPILANVLIEAEGANVSFRATDLDIEVVDRAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL +GA +S   E+     + I+ G S F L + P+ +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPEGALVS-LAEDGAAGRLTITAGRSTFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + +L+ L ++  FA++TEE RYYLNG++ H++  E    L AVATDG
Sbjct: 120 MANAEYASNFSAPAPLLRRLFDKAKFAISTEETRYYLNGVYLHVSTGESGPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK V E+ ++L   ++ + VS+SE+++      L+++
Sbjct: 180 HRLARIDAPLPEGAAGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPVLTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|255261800|ref|ZP_05341142.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62]
 gi|255104135|gb|EET46809.1| DNA polymerase III, beta subunit [Thalassiobium sp. R2A62]
          Length = 372

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 233/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ERS +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+    PA 
Sbjct: 1   MKISIERSILLKAVAQAQSVVERRNTIPILANVLIEAEGDSATFRATDLDIEVVDKAPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L +IVRKL DGA ++   ++     + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVAAVTLNEIVRKLPDGALVT-LTDDSATGRLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MASSEYAANFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADSDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+    + M  +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPDGASDMAGVIVPRKTVGELRKLLDDDDVQIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFAKAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V YN+  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEEIAVAYNDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|323493782|ref|ZP_08098900.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546]
 gi|323311916|gb|EGA65062.1| DNA polymerase III subunit beta [Vibrio brasiliensis LMG 20546]
          Length = 366

 Score =  379 bits (974), Expect = e-103,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D + I+F  +   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDSVITFVLD---GDRVQVRSGRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ LVE+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++V + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQVQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S  K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEAGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|126730157|ref|ZP_01745969.1| DNA polymerase III subunit beta [Sagittula stellata E-37]
 gi|126709537|gb|EBA08591.1| DNA polymerase III subunit beta [Sagittula stellata E-37]
          Length = 372

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 150/387 (38%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L  +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+     A 
Sbjct: 1   MKISMERATLLRAVAQAQSVVERRNTIPILANVLIEAEGETVTFRATDLDIEVLDKAEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G  TVSA  L++IVRKL DGA +   +E   G  + +S G SNF L + P+ +FP 
Sbjct: 61  VEKPGGTTVSAVTLHEIVRKLPDGALVVLAEEPGTG-RLTVSAGRSNFNLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ + D    L  VATDG
Sbjct: 120 MASSEYGSNFTAKAEVLRRLFDKSKFAISTEETRYYLNGVYMHVADGDGGQALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAPLPDGAADMPGVIVPRKTVGEMRKLLDEDDMDIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+ +   +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|163733263|ref|ZP_02140707.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149]
 gi|161393798|gb|EDQ18123.1| DNA polymerase III subunit beta [Roseobacter litoralis Och 149]
          Length = 372

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 237/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDVSFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSATTLHEIVRKLPDGALVTLTADSATG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+   E    L  VATDG
Sbjct: 120 MATSEYQSNFSAKAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADAEGGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L + + ++ VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPEDANDMPGVIVPRKTVGELRKLLDNDEMTIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N ++L V+  +  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKLEVDAADFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDLSAVYVVMPMRV 372


>gi|260774982|ref|ZP_05883882.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC
           BAA-450]
 gi|260609072|gb|EEX35231.1| DNA polymerase III beta subunit [Vibrio coralliilyticus ATCC
           BAA-450]
          Length = 366

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERNHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNMLSMTATDLEVELISRVALE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GS+TV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++V + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQVQLGADFAQQ-QIIVPRKGVLELVKLLDAPEQPVTLQIGSSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQTTTKTLEAECDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----EKVRVSMSDANASAMI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D          A YV+MP+R+
Sbjct: 350 ENVDDD---------GAMYVVMPIRL 366


>gi|197334198|ref|YP_002154782.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11]
 gi|197315688|gb|ACH65135.1| DNA polymerase III, beta subunit [Vibrio fischeri MJ11]
          Length = 366

 Score =  378 bits (972), Expect = e-103,   Method: Composition-based stats.
 Identities = 117/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + ++P+  ++LLQ  +G L + A+  E+E+   I   
Sbjct: 1   MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L D A I+   E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E      L+ + L+ L+E T F+MA +++RYYLNG+ F          +VATDGH
Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGN--IFRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  + + +++ +   +I+PRK + E++R+L S D SV +    S +   + +   + 
Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPDQSVTLQFGNSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K L  +C  LRQA  R +I+S+ + + V+++L+++++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   + ++N+S  +
Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 350 EDCANDE---------AQYVVMPIRL 366


>gi|121601944|ref|YP_989527.1| DNA polymerase III subunit beta [Bartonella bacilliformis KC583]
 gi|120614121|gb|ABM44722.1| DNA polymerase III, beta subunit [Bartonella bacilliformis KC583]
          Length = 373

 Score =  378 bits (971), Expect = e-103,   Method: Composition-based stats.
 Identities = 162/387 (41%), Positives = 245/387 (63%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T++R+  L+ LG   R++ER+NT+P+  +VL+ A+   + +KA+  ++EIT      
Sbjct: 1   MRVTIDRNQFLKSLGCVHRVVERRNTVPILSNVLIDADSDGMRLKATDLDLEITEFSVPH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G ITV AHLLYDIVRKL DG +I    + +    +++  G +NF LQ FP+ +FP 
Sbjct: 61  IEQTGGITVPAHLLYDIVRKLPDGNEIILAVDADRPNTMSVISGFANFRLQGFPKMDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++ + F L +S LK+L++ T FA++TEE RYYLNGI+FHI  +  LKL  VATDGH
Sbjct: 121 SLPGQFNFRFSLLASDLKHLLDCTQFAISTEETRYYLNGIYFHIVNDGALKLRLVATDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  +    MP +I+PRK VGE+ R+LS + D+ V + LSE++I  ++ S+ ++
Sbjct: 181 RLAQVDMEAPSGSEGMPGVIIPRKTVGELQRLLSEEADNYVCIELSETKIRFSVGSVVLT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  +    VDRVS +SS R +AVKL++ + +L   
Sbjct: 241 SKLIDGTFPEYQRVIPLGNDKKLTVNRRDFSSTVDRVSTISSDRGRAVKLTIENGQLRFV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   +S      DE+VF LD + +   
Sbjct: 301 VNNPDSGSAEDQLVADYASDPLEIGFNSRYLLDIAAQLSG-----DEIVFMLDEAGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR           +  NA YVLMP+R+
Sbjct: 356 IRD---------SHDTNALYVLMPIRV 373


>gi|254486821|ref|ZP_05100026.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101]
 gi|214043690|gb|EEB84328.1| DNA polymerase III, beta subunit [Roseobacter sp. GAI101]
          Length = 372

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+    PA 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ TVSA  L++IVRKL DGA I+   ++  G  + +  G SNF L + P  +FP 
Sbjct: 61  IERAGATTVSATTLHEIVRKLPDGALITLTSDSAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ HI+E +    L  VATDG
Sbjct: 120 MASSEYQSNFSAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISESEGNKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAPMPEGADDMPGVIVPRKTVGELRKLLDDDDMQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+ ++  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|59710617|ref|YP_203393.1| DNA polymerase III subunit beta [Vibrio fischeri ES114]
 gi|59478718|gb|AAW84505.1| DNA polymerase III, beta subunit [Vibrio fischeri ES114]
          Length = 366

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + ++P+  ++LLQ  +G L + A+  E+E+   I   
Sbjct: 1   MKFSIERSLLLKPLQQVSGALGGRPSLPILGNILLQVENGQLSMTATDLEVELISKITLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L D A I+   E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGAVTVPSRKFLDICRGLPDSANITIVLE---GDRVLVRSGRSRFTLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E      L+ + L+ L+E T F+MA +++RYYLNG+ F          +VATDGH
Sbjct: 118 NIEGWESEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGN--IFRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  + + +++ +   +I+PRK + E++R+L S + SV +    S +   + +   + 
Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K L  +C  LRQA  R +I+S+ + + V+++L+++++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   + ++N+S  +
Sbjct: 295 NNPEQEEAEEILDVDFQGDDIEIGFNVSYVLDVLNTLKC-----ERVRISMTTANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 350 EDCANDE---------AQYVVMPIRL 366


>gi|254282661|ref|ZP_04957629.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B]
 gi|219678864|gb|EED35213.1| DNA polymerase III, beta subunit [gamma proteobacterium NOR51-B]
          Length = 365

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 209/386 (54%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M  T+ R  +++ L     ++ER+ T+P+  +VLL+     LE+  +  E+E+ G +  A
Sbjct: 1   MNFTIPRDALIKPLNLVAGVVERRQTLPILSNVLLRVEGNRLELTGTDLEVELLGRVDLA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +G++I+F  +     +  +  G S F L + P ++FP
Sbjct: 61  EPGEAGEITVPARKLVDICKSLPEGSEINFSVD---SGKATVKAGRSRFTLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E   S  L  SVLK L++RT FAMA +++RYYLNG+   I     +L  VATDGH
Sbjct: 118 TVESSEGEVSVSLPQSVLKRLIDRTGFAMAQQDVRYYLNGMLLEILGG--RLRMVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+       +     S+I+PRK V E+ R+L   D  V + +  + +       + + 
Sbjct: 176 RLALCTAQEPVEAGD-ASVIIPRKGVLELARLLE-GDGPVTLVIGSNHVRAANLQFTFTS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y+ V+P S DK +  +   LRQA  R +I+S+ + + V+L ++ D L +T 
Sbjct: 234 KLVDGKFPEYERVLPKSPDKSVVGDRQTLRQAFTRTAILSNEKYRGVRLKIADDTLEITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P+++ FN  YLL+++  +      D++V   L  + SS  +
Sbjct: 294 NNPEQEQAEEVVSVEFQGDPLEVGFNVSYLLDVLSVLG-----DEKVRLSLADAASSALL 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 349 EEAD---------GGDSLYVVMPMRL 365


>gi|323496928|ref|ZP_08101956.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326]
 gi|323318002|gb|EGA70985.1| DNA polymerase III subunit beta [Vibrio sinaloensis DSM 21326]
          Length = 366

 Score =  378 bits (970), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GS+TV +    DI R L D + I+F  E   G  V +  G S F L + P S+FP
Sbjct: 61  GEFEAGSVTVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEISLSQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNLRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLETGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++  P++I FN  Y+L++++ +  ++     V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRCEK-----VRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|296445221|ref|ZP_06887181.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
 gi|296257395|gb|EFH04462.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
          Length = 371

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 172/387 (44%), Positives = 237/387 (61%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ER+ +L  LGH  R++ER+ TIP+  +VL       L +KA+  ++EIT    A 
Sbjct: 1   MKITIERAALLRALGHVHRVVERRTTIPILANVL-LDAADGLLLKATDLDLEITEKAAAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ T+ AH LYDIVRKL DGAQ+S     E G  + +  G S F LQS PES+FP 
Sbjct: 60  IGQKGATTLPAHTLYDIVRKLPDGAQVSLEGTGEQGLFL-LRSGRSRFQLQSLPESDFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               E+ + F+LA + LK L+ +T FA+++EE RYYLNGIF H  E +    L AVATDG
Sbjct: 119 VTSGEFSHRFQLAPADLKKLILKTQFAISSEETRYYLNGIFLHSTEVEGHQLLRAVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E+   A  A MP +I+PRKAV E+LR++     +V++ LS +++  +     ++
Sbjct: 179 HRLARVELPAPAGAAGMPGVILPRKAVNEVLRLVEDAQGAVEIELSTNKMRFSFGETVLT 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L V   + R+AVDRVS +SS R +AVKL+LS  KL ++
Sbjct: 239 TKLIDGTFPDYGRVIPAGNDKRLTVERASFREAVDRVSTISSERGRAVKLALSEGKLVLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A+E +   Y+  P+DI FN +YLL+I D + S     D  +FRL    S   
Sbjct: 299 VTNPDQGSAVEEIEADYDGPPIDIGFNSRYLLDIADQLDS-----DTALFRLADPGSPTL 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D           +A YVLMPMR+
Sbjct: 354 IQDRD---------GASALYVLMPMRV 371


>gi|254439754|ref|ZP_05053248.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307]
 gi|198255200|gb|EDY79514.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 307]
          Length = 372

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A+      +A+  +IE+     A 
Sbjct: 1   MKISIERASLLKAVAQAQSVVERRNTIPILANVLIEASGDEATFRATDLDIEVVDKATAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L +IVRKL DGA ++   ++     + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGATTVSAVTLNEIVRKLPDGALVT-LTDDSASGRLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               +Y  +F   + VL+ L +++ FA++TEE RYYLNG++ H++E D    L  VATDG
Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      M  +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDDMMIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N +++ V+     +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E ++V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372


>gi|37678196|ref|NP_932805.1| DNA polymerase III subunit beta [Vibrio vulnificus YJ016]
 gi|37196935|dbj|BAC92776.1| DNA polymerase III, beta chain [Vibrio vulnificus YJ016]
          Length = 366

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L      +  + T+P+  ++L+   +G L + A+  E+E+   +   
Sbjct: 1   MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAPLSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  +
Sbjct: 295 NNPEQEEAEEMLDVSFDGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|262273131|ref|ZP_06050948.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886]
 gi|262222887|gb|EEY74195.1| DNA polymerase III beta subunit [Grimontia hollisae CIP 101886]
          Length = 366

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R   L+ L      +  + T+P+  ++LL+   G L +  +  E+E+   +P  
Sbjct: 1   MKFTVTRDQFLKPLQQVSGALGGRPTLPILGNILLKVESGQLSMTCTDLEVELIANLPLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G++TV +    DI R L D A ISF  E   G    I  G S F L + P ++FP
Sbjct: 61  SEAQEGAVTVPSRKFLDICRGLPDSASISFSLE---GDRAVIRSGRSRFTLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    L+ L+E T F+MA +++RY+LNG+      E   L +VATDGH
Sbjct: 118 NIEDWQSTVEFTLPQGKLRQLMESTAFSMANQDVRYFLNGMLLET--EGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV    +  ++A    +IVPRK V E++R+L + D+ V + +  + I   +     + 
Sbjct: 176 RMAVGTTLLDNELA-AQQVIVPRKGVTELMRMLDNPDAPVTIQIGSANIRALVNQFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K +   C +LRQA  R +I+S+ + + V+L+LS+ +L ++ 
Sbjct: 235 KLVDGRFPDYRRVLPQSSNKIMEAGCDDLRQAFSRAAILSNEKFRGVRLNLSAGQLRISA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A E ++V Y+   ++I FN  Y+L++++ + S     ++V F +    +S  +
Sbjct: 295 HNPEQEEAEEFVDVNYDGDDLEIGFNVSYVLDVLNTLKS-----EQVRFSMTDGTASTLV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D         +A YV+MP+R+
Sbjct: 350 EDCNND---------DAMYVVMPIRL 366


>gi|83855143|ref|ZP_00948673.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1]
 gi|83941666|ref|ZP_00954128.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36]
 gi|83842986|gb|EAP82153.1| DNA polymerase III subunit beta [Sulfitobacter sp. NAS-14.1]
 gi|83847486|gb|EAP85361.1| DNA polymerase III subunit beta [Sulfitobacter sp. EE-36]
          Length = 372

 Score =  377 bits (969), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 236/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER+ +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+     A 
Sbjct: 1   MKFSIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSDASFRATDLDIEVVDKAAAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DGA IS   ++  G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVSATTLHEIVRKLPDGALISLTADSAAG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               EY  +F+  + VL+ L +++ FA++TEE RYYLNG++ HI++ +    L  VATDG
Sbjct: 120 MATSEYQSNFKAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHISDSEGSKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A+MP +IVPRK VGE+ ++L   D  + VS+SE++I      ++++
Sbjct: 180 HRLARIDAPMPEGAAEMPGVIVPRKTVGELRKLLDDDDMEIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N +++ V+ ++  +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRKMEVDASDFARAVDRVATVSSERSRAVKLQLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N ++A YV+MPMR+
Sbjct: 355 MR---------EGNDMSAVYVVMPMRV 372


>gi|294010896|ref|YP_003544356.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S]
 gi|292674226|dbj|BAI95744.1| DNA polymerase III beta subunit [Sphingobium japonicum UT26S]
          Length = 370

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A+ DG +++ A+  +++I  ++ A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQIVESVSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ T+SAH L+DI RKL +G+Q+S         ++ I  G + F L + P  +FP
Sbjct: 61  QVEQPGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178
              E +   SFEL +  LK ++++T FA++TEE RYYLNGI+FH++++    L A ATDG
Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   V        MP IIVPRK +GE+ ++L   D SV++SLS S+I   + S  ++
Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVDGSVQISLSASKIRFGLGSAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDK L+++  +  + VDRV+ +++ + +AVK++L  DK+ ++
Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   +     DI FN +YLL+I+  I SD      V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDSDL-----VELHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +D++  A YVLMPMR+
Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370


>gi|126724506|ref|ZP_01740349.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
           HTCC2150]
 gi|126705670|gb|EBA04760.1| DNA polymerase III subunit beta [Rhodobacterales bacterium
           HTCC2150]
          Length = 372

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 153/387 (39%), Positives = 234/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +G A  ++ER+NTIP+  +VL++A+   +  +A+  +IE+     A 
Sbjct: 1   MKISIERATLLKAVGQAQSVVERRNTIPILANVLIEADANSVSFRATDLDIEVVDKTVAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+ TVSA  L++IVRKL DGA +    +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VDRPGATTVSAVTLHEIVRKLPDGALVQLTDDGSSG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F + S VL+ L +++ FA++TEE RYYLNG++ H+++ D    L  VATDG
Sbjct: 120 MANAEYGANFSIESKVLRRLFDKSKFAISTEETRYYLNGVYMHVSDADGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+ A    MP +IVPRK VGE+ ++L   D  + VS+SE+++      ++++
Sbjct: 180 HRLARIDADLPAGAETMPGVIVPRKTVGELRKLLDDDDVKIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELAVAYGDDRLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N   A YV+MPMR+
Sbjct: 355 MR---------EGNDTTAVYVVMPMRV 372


>gi|254507273|ref|ZP_05119409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16]
 gi|219549733|gb|EED26722.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus 16]
          Length = 366

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  E   L +VATDGH
Sbjct: 118 NIEDWQSEVEISLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTALGADFAQQ-QIIVPRKGVLELVKLMDAPEQPVTLQIGSSNVRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++  P++I FN  Y+L++++ +  ++     V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFDGEPIEIGFNVSYVLDVLNTLRCEK-----VRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + DS         A YV+MP+R+
Sbjct: 350 ENAEDDS---------AMYVVMPIRL 366


>gi|294675559|ref|YP_003576174.1| DNA polymerase III subunit beta [Rhodobacter capsulatus SB 1003]
 gi|294474379|gb|ADE83767.1| DNA polymerase III, beta subunit [Rhodobacter capsulatus SB 1003]
          Length = 372

 Score =  377 bits (968), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERAALLKAVSQAQSVVERRNTIPILANVLIEAEGSTVSFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA +L++IVRKL DG+ +    ++     +++  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVSAVMLHEIVRKLPDGSLV-QLSDDAAAGRLSVMAGRSSFNLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   + VLK L +++ FA++TEE RYYLNG++ H+   E+   L  VATDG
Sbjct: 120 MASSEYTANFAAKAGVLKRLFDKSKFAISTEETRYYLNGVYMHVATGEDGPALRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      MP +IVPRK V E+ ++L   ++ + VS+SE+++      ++++
Sbjct: 180 HRLARIDAVLPEGANGMPGVIVPRKTVNELRKLLDDDEAQIAVSVSETKVRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKLSL  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPMGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLSLDEDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDAGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAVYVVMPMRV 372


>gi|218673040|ref|ZP_03522709.1| DNA polymerase III subunit beta [Rhizobium etli GR56]
          Length = 361

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 179/376 (47%), Positives = 250/376 (66%), Gaps = 17/376 (4%)

Query: 12  ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71
           + L H  R++ER+NTIP+  +VLL+A+   L++KA+  ++EIT A PASV+  G+ TV A
Sbjct: 1   KSLNHVHRVVERRNTIPILSNVLLKADGQNLDMKATDLDLEITEATPASVEQAGATTVPA 60

Query: 72  HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131
           HLLYDIVRKL DG+++      + G+ + +  G S F LQ  PES+FP      + +SF+
Sbjct: 61  HLLYDIVRKLSDGSEVLLATSPDGGS-MTVQSGRSKFSLQCLPESDFPDLTAGTFTHSFK 119

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDGHRLAVAEVDIV 189
           L +S LK L++RT FA++TEE RYYLNGIFFH  E   +LKL AVATDGHRLA A+VD  
Sbjct: 120 LKASDLKMLIDRTQFAISTEETRYYLNGIFFHTIESKGELKLRAVATDGHRLARADVDAP 179

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
           +    MP II+PRK VGE+ +++ + ++ V V +S+++I + I S+ ++ +LIDG FP+Y
Sbjct: 180 SGSEGMPGIIIPRKTVGELQKLVDNPEAIVTVEVSDAKIRMTIGSIVLTSKLIDGTFPDY 239

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309
           Q VIP  NDKE+RV+CT+  QAVDRVS +SS R +AVKL+LS  +L +TV+NPD G A E
Sbjct: 240 QRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERGRAVKLALSEGQLMLTVNNPDSGSATE 299

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
            + V Y+   M+I FN KYLL+I   +S      +E +F L  + S   IR    D    
Sbjct: 300 EVAVGYDTDAMEIGFNAKYLLDITAQLSG-----EEAIFLLADAGSPTLIRDTAGD---- 350

Query: 370 KDNKVNAFYVLMPMRI 385
                +A YVLMPMR+
Sbjct: 351 -----DALYVLMPMRV 361


>gi|94495788|ref|ZP_01302367.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58]
 gi|94424480|gb|EAT09502.1| DNA polymerase III, beta subunit [Sphingomonas sp. SKA58]
          Length = 370

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 233/387 (60%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A+ DG +++ A+  ++++  +I A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASADGAIKLMATDLDLQVVESISA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ T+SAH L+DI RKL +G+Q+S    +    ++ I  G + F L + P  +FP
Sbjct: 61  QVEQPGATTISAHTLFDIARKLPEGSQVSLQAAD---GKMLIQAGRARFNLSTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178
              E +    FEL +  LK ++++T FA++TEE RYYLNGI+FH++EE    L A ATDG
Sbjct: 118 VIAEGDLPTQFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSEEGQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   V        MP IIVPRK +GE+ ++L   + SV++SLS S+I   + S  ++
Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK L+++  +    VDRV+ +++ + +AVK++L  D++ ++
Sbjct: 238 SKLIDGTFPDYSRVIPTGNDKLLKIDPRSFEDGVDRVATIATEKTRAVKMTLDKDRITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   +     DI FN +YLL+I+  I SD      V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDSDL-----VELHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  D            A YVLMPMR+
Sbjct: 353 IRENDASP---------ALYVLMPMRV 370


>gi|229524914|ref|ZP_04414319.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis
           VL426]
 gi|229338495|gb|EEO03512.1| DNA polymerase III beta subunit [Vibrio cholerae bv. albensis
           VL426]
          Length = 366

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D+V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGDPIEIGFNVSYVLDVLNTLRC-----DQVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|288959567|ref|YP_003449908.1| DNA polymerase III subunit beta [Azospirillum sp. B510]
 gi|288911875|dbj|BAI73364.1| DNA polymerase III subunit beta [Azospirillum sp. B510]
          Length = 376

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 150/391 (38%), Positives = 226/391 (57%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ER+ +L  LGH   ++ER+NTIP+  +VLL+A DG L + A+  ++EI   +PA+
Sbjct: 1   MNITIERAALLRSLGHVQSVVERRNTIPILSNVLLRAGDGELSLAATDMDLEIVETVPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  T  AH L+DIVRKL DG+Q+        GT + +  G S F L   P  +FP 
Sbjct: 61  VGRPGGTTAPAHTLFDIVRKLPDGSQVE-LDIGGDGTILTLRAGRSQFKLSCLPVEDFPQ 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE------EDLKLCAV 174
               +  ++F + ++ L+ L++RT FA++TEE RYYLNGI+ H  +      E   L AV
Sbjct: 120 LSSGDLKHNFSVPAADLRGLIDRTRFAISTEETRYYLNGIYLHAAKSKMGGLETPVLRAV 179

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRLA  E+ +      +P +I+PRK V EI +++      +++S+S+++I    +S
Sbjct: 180 ATDGHRLARVEMPLPDGAEGIPGVIIPRKTVTEIRKLVDEAADRIELSMSDNKIRFGFDS 239

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + ++ +LIDG FP+Y+ VIP  NDK + V+      AVDRV+ +S+ + +AVKLSL    
Sbjct: 240 VVVTSKLIDGTFPDYERVIPVGNDKVMEVDAKLFAAAVDRVATISTEKSRAVKLSLVRGA 299

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  +P+ G A E + V Y E P++I FN +YLL+I   I       +   F L  + 
Sbjct: 300 LTLSATSPESGSATEELEVNYAEAPLEIGFNSRYLLDITQQIEG-----EGAQFTLADAA 354

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   IR     +         A YVLMPMR+
Sbjct: 355 SPTIIRDVADST---------ALYVLMPMRV 376


>gi|121587274|ref|ZP_01677047.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80]
 gi|261213262|ref|ZP_05927544.1| DNA polymerase III beta subunit [Vibrio sp. RC341]
 gi|121548520|gb|EAX58576.1| DNA polymerase III, beta chain [Vibrio cholerae 2740-80]
 gi|260837536|gb|EEX64239.1| DNA polymerase III beta subunit [Vibrio sp. RC341]
          Length = 366

 Score =  376 bits (967), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  D  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEDNQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|260771048|ref|ZP_05879976.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972]
 gi|260613937|gb|EEX39128.1| DNA polymerase III beta subunit [Vibrio furnissii CIP 102972]
          Length = 366

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS  ++ L      +  + T+P+  ++LL+  D  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A    DI R L D A I+   E   G  V +  G S F L + P S+FP
Sbjct: 61  GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++ ++ A  A    IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNLRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + +K L+  C  LRQA  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|254451638|ref|ZP_05065075.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238]
 gi|198266044|gb|EDY90314.1| DNA polymerase III, beta subunit [Octadecabacter antarcticus 238]
          Length = 372

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 145/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L+ +  A  ++ER+NTIP+  +VL++A+      +A+  +IE+     A 
Sbjct: 1   MKLSIERASLLKAVAQAQSVVERRNTIPILANVLIEASGAEATFRATDLDIEVVDKATAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS TVSA  L +IVRKL DGA ++   E+     + I  G SNF L + P+ +FP 
Sbjct: 61  VERAGSTTVSAVTLNEIVRKLPDGALVT-LTEDSASGRLTIEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               +Y  +F   + VL+ L +++ FA++TEE RYYLNG++ H++E D    L  VATDG
Sbjct: 120 MASSDYATNFSCPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVSESDGGKVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      M  +IVPRK VGE+ ++L   +  + VS+SE+++      ++++
Sbjct: 180 HRLARIDAALPEGADGMAGVIVPRKTVGELRKLLDDDEMMIAVSVSETKVRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +N +++ V+     +AVDRV+ +SS R +AVKL L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPQNNTRKMEVDAAEFARAVDRVATVSSERSRAVKLQLDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E ++V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELSVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + N  +A YV+MPMR+
Sbjct: 355 MR---------EGNDTSAIYVVMPMRV 372


>gi|261250638|ref|ZP_05943213.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891]
 gi|260939207|gb|EEX95194.1| DNA polymerase III beta subunit [Vibrio orientalis CIP 102891]
          Length = 366

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDSVITFVLE---GDRVQVRSGRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ LVE+T F+MA +++RYYLNG+ F I  E   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQAELRGLVEKTQFSMANQDVRYYLNGMLFEI--EGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGSSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S  K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSTSKTLETGCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGEPIEIGFNVSYVLDVLNTLRC-----ETVRISMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MP+R+
Sbjct: 350 ENAADDS---------AMYVVMPIRL 366


>gi|221135256|ref|ZP_03561559.1| DNA polymerase III, beta subunit [Glaciecola sp. HTCC2999]
          Length = 368

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 216/387 (55%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           MK T+ R   L+ L      IER++T+P+  ++LL   +G+L +  +  E+E+    ++ 
Sbjct: 1   MKFTISREQFLQPLQLVSGAIERRHTLPILSNILLVVKEGVLTLTGTDLEVELISHLSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A     G ITV A  L DI R L DG  I+F  +   GT+  I  G   + L +   S++
Sbjct: 61  ADSYEDGEITVPAKKLVDICRGLSDGNDITFQVD---GTKATIRSGRGRYTLSTLSASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +    F ++ + LK+L++ T FAMA +++RYYLNG+     + +++   VATDG
Sbjct: 118 PNLEDWQADVEFVISQNDLKHLIDSTSFAMAQQDVRYYLNGMSLETEDNNIR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    +   +  +I+PRK V EI R++ + D+SVKV +  + I +       +
Sbjct: 176 HRLALCNLAYTTETLPVRQVIIPRKGVLEINRLIEANDNSVKVKIGSNHISVKSSGFVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+++ V+P    K +  N   +++A  R SI+S+ + + V+L+LS+ +L +T
Sbjct: 236 SKLVDGRFPDHRRVLPKETTKAVTANKDVMKKAFSRASILSNEKFRGVRLNLSNGELKIT 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    ++I FN  YL+++++ + +     DEV F L  S++S  
Sbjct: 296 ANNPEQEEAEEIVDVNYQGEELEIGFNVAYLIDVMNALKT-----DEVKFNLSDSSASAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I      +         A YV+MPMR+
Sbjct: 351 IEDATNST---------ALYVIMPMRL 368


>gi|28896786|ref|NP_796391.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus RIMD
           2210633]
 gi|260363485|ref|ZP_05776318.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030]
 gi|260876544|ref|ZP_05888899.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034]
 gi|260901415|ref|ZP_05909810.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037]
 gi|28804994|dbj|BAC58275.1| DNA polymerase III, beta chain [Vibrio parahaemolyticus RIMD
           2210633]
 gi|308090394|gb|EFO40089.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AN-5034]
 gi|308107195|gb|EFO44735.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ4037]
 gi|308113560|gb|EFO51100.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus K5030]
 gi|328471239|gb|EGF42141.1| DNA polymerase III subunit beta [Vibrio parahaemolyticus 10329]
          Length = 366

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +  ++     V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRCEK-----VQVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|269965277|ref|ZP_06179398.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B]
 gi|269830078|gb|EEZ84306.1| DNA polymerase III, beta chain [Vibrio alginolyticus 40B]
          Length = 366

 Score =  376 bits (966), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + + + + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVSFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|320157815|ref|YP_004190194.1| DNA polymerase III subunit beta [Vibrio vulnificus MO6-24/O]
 gi|319933127|gb|ADV87991.1| DNA polymerase III beta subunit [Vibrio vulnificus MO6-24/O]
          Length = 366

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L      +  + T+P+  ++L+   +G L + A+  E+E+   +   
Sbjct: 1   MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFLDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I  E   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       ++V   +  +N+S  +
Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|192362292|ref|YP_001980526.1| DNA polymerase III subunit beta [Cellvibrio japonicus Ueda107]
 gi|190688457|gb|ACE86135.1| DNA polymerase III, beta subunit [Cellvibrio japonicus Ueda107]
          Length = 367

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  +L+ L     ++ER+ T+PV  +VL+Q     L +  +  E+EI G +   
Sbjct: 1   MKFAVSREALLKPLQLVAGVVERRQTLPVLSNVLIQLEGDQLSLTGTDLEVEIIGRLTLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI R L DG+ I FF E      + +  G S F L + P S+FP
Sbjct: 61  QAGQSGEITVPARKLVDICRSLPDGSTIEFFLEE---NRILVKSGRSRFTLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++      F  A + +K L+ERT FAMA +++RYYLNG+ + + ++ L++  VATDGH
Sbjct: 118 NVEDAPGNLRFSCAQAEVKRLIERTAFAMAQQDVRYYLNGMLWEVRQDHLRV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+    I      +   I+PRK V E+ R+L    + V+V LS + I +     + + 
Sbjct: 176 RMAMCTRAIAVNTDDVVQAILPRKGVLELSRLLDDSSAQVEVVLSANHIRVTSVDYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y+ V+P   +K +  +   L+QA  R +I+S+ + + V+L LS+  L +  
Sbjct: 236 KLVDGKFPEYERVLPRGGNKVVIGSRLELKQAFARTAILSNEKYRGVRLLLSNGVLTIVA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  YL ++ + IS     ++ +   L  +NSS  +
Sbjct: 296 NNPEQEEAEEQVTVDYTGESLEIGFNVSYLQDVANVIS-----NENIKITLLDANSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           ++ YV+MPMR+
Sbjct: 351 EEPEN---------SDSLYVVMPMRL 367


>gi|254225545|ref|ZP_04919154.1| DNA polymerase III, beta chain [Vibrio cholerae V51]
 gi|125621865|gb|EAZ50190.1| DNA polymerase III, beta chain [Vibrio cholerae V51]
          Length = 366

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   +K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTNKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       + V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|319406518|emb|CBI80160.1| DNA polymerase III, beta chain [Bartonella sp. 1-1C]
          Length = 373

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 159/387 (41%), Positives = 246/387 (63%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ RS +L+ L    RI+ER++ IP+  +VL+  +DG +++KA+  ++EI  +   +
Sbjct: 1   MRITIGRSQLLKSLSRVHRIVERRSAIPILSNVLIDTSDGRMQLKATDLDLEIIESSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D + +      +  + ++I+ G +NF LQ  P+ +FP 
Sbjct: 61  IEQGGAITVPAHLLYDIVRKLPDDSNVILEVNEDQASAMSITSGCTNFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FH+ ++D LKL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIDDDILKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  + +  MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ ++
Sbjct: 181 RLAQVDIEAPSGVDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L VN  +   AVDRVS +SS R +AVKL++    + + 
Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLIVNRQDFSAAVDRVSTISSDRGRAVKLTIEKGVVKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   +SS     DE++F    S +   
Sbjct: 301 VNNPDSGSAKDQLVANYVFDPLEIGFNSRYLLDIAAQLSS-----DEMIFMFADSGAPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IRG D           NA YVLMP+R+
Sbjct: 356 IRGNDD---------KNALYVLMPIRV 373


>gi|262392782|ref|YP_003284636.1| DNA polymerase III subunit beta [Vibrio sp. Ex25]
 gi|262336376|gb|ACY50171.1| DNA polymerase III beta subunit [Vibrio sp. Ex25]
          Length = 366

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + + + + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|159045914|ref|YP_001534708.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12]
 gi|157913674|gb|ABV95107.1| DNA polymerase III subunit beta [Dinoroseobacter shibae DFL 12]
          Length = 372

 Score =  376 bits (965), Expect = e-102,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 235/387 (60%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L  +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+   + A 
Sbjct: 1   MKISIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGDSVSFRATDLDIEVVDRVTAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV A  L++IVRKL DGA ++   +   G  + +S G SNF L + P  +FP 
Sbjct: 61  VERAGATTVPAVTLHEIVRKLPDGALVALTHDTAKG-RLEVSAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               EY  +F   + VL+ L +++ FA++TEE RYYLNG++ H+ + +    L  VATDG
Sbjct: 120 MTTTEYTCNFAAPAPVLRRLFDKSKFAISTEETRYYLNGVYMHVADGENGRSLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  + D+      MP +IVPRK VGE+ ++L   ++ + VS+SE++I      ++++
Sbjct: 180 HRLARIDADLPDAAEGMPGVIVPRKTVGELRKLLEDDEAQIAVSVSETKIRFATPEITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP SN ++L V+ +   +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPVSNSRKLEVDASEFAKAVDRVATVSSERSRAVKLALDEDRLILS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +S+     
Sbjct: 300 VNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSAADPTM 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         + +  +A YV+MPMR+
Sbjct: 355 MR---------EGSDSSAIYVVMPMRV 372


>gi|315178625|gb|ADT85539.1| DNA polymerase III, beta chain [Vibrio furnissii NCTC 11218]
          Length = 366

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS  ++ L      +  + T+P+  ++LL+  D  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHFIKPLQQVSGTLGGRATLPILGNLLLKVEDNQLSMTATDLEVELVSRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ TV A    DI R L D A I+   E   G  V +  G S F L + P S+FP
Sbjct: 61  GDFEAGTTTVPARKFLDICRGLPDAAVITVVLE---GDRVQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVELSLTQGELRGLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++ ++ A  A    IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTELGADFAN-KQIIVPRKGVLELVKLLDALEQPVVLQIGSSNLRAEVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + +K L+  C  LRQA  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQNTNKTLQAGCDELRQAFSRAAILSNEKFRGVRVNLDGGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       D V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVNFDGEAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|153802490|ref|ZP_01957076.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3]
 gi|229530201|ref|ZP_04419590.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)]
 gi|262402081|ref|ZP_06078645.1| DNA polymerase III beta subunit [Vibrio sp. RC586]
 gi|124121960|gb|EAY40703.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-3]
 gi|229332334|gb|EEN97821.1| DNA polymerase III beta subunit [Vibrio cholerae 12129(1)]
 gi|262351727|gb|EEZ00859.1| DNA polymerase III beta subunit [Vibrio sp. RC586]
 gi|327482926|gb|AEA77333.1| DNA polymerase III beta subunit [Vibrio cholerae LMA3894-4]
          Length = 366

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|330500916|ref|YP_004377785.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01]
 gi|328915202|gb|AEB56033.1| DNA polymerase III subunit beta [Pseudomonas mendocina NK-01]
          Length = 367

 Score =  375 bits (964), Expect = e-102,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 212/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L   A I    +++   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  + L+ L+ERT FAMA +++RYYLNG+   +    L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQSGLLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++   Q      +IVPRK + E+ R+L+ +D+ V + L +  I  N    + + 
Sbjct: 176 RLAMCSMEASIQQDGKHQVIVPRKGILELARLLTEQDAEVSIVLGQHHIRANTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L+L+   L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLADGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  + +     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEIVVDYNGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QEADND---------DSAYVVMPMRL 367


>gi|89092265|ref|ZP_01165219.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92]
 gi|89083353|gb|EAR62571.1| DNA polymerase III subunit beta [Oceanospirillum sp. MED92]
          Length = 367

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +++ L     ++ER+ T+PV  ++LL A    L +  +  E+E+ G +   
Sbjct: 1   MKFVISREALIKPLQLVAGVVERRQTLPVLSNILLVAEGDQLSMTGTDLEVELVGRVTLD 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS+TV A  L DI + L D A+I        G ++ I  G S F L + P +EFP
Sbjct: 61  EPAEAGSVTVPARKLMDICKSLPDSARIELTL---TGQKMVIKAGRSRFTLSTLPAAEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++        +    L+NL+++T F+MA +++RYYLNG+   I    L+  +V+TDGH
Sbjct: 118 NVEDSPETLELSMVQHQLRNLIDKTGFSMAQQDVRYYLNGMLLEIANGQLR--SVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA +  D+ A+      IIVPRK + E+ R+L + +  +++ +  S I  ++   + + 
Sbjct: 176 RLATSVTDVEAEDGMQHQIIVPRKGILELARLLQNGEEELRLVIGASHIRAHVGDFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ VIP + DK L  +   LRQ + R++I+S+ + + V+LSLSS  L +  
Sbjct: 236 KLVDGKFPDYERVIPKNGDKILLSDRMELRQVLSRIAILSNEKYRGVRLSLSSGYLQVMA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E++ V Y    +++ FN  YLL+ +  ++SD      V   L  SNSS  +
Sbjct: 296 NNPEQEEAEETLAVDYEGETLEVGFNVNYLLDCLSILNSDV-----VRLTLSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G D++          + YV+MPMR+
Sbjct: 351 EGFDEE---------GSVYVVMPMRM 367


>gi|153212930|ref|ZP_01948524.1| DNA polymerase III, beta chain [Vibrio cholerae 1587]
 gi|229520185|ref|ZP_04409612.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80]
 gi|254291126|ref|ZP_04961923.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226]
 gi|124116156|gb|EAY34976.1| DNA polymerase III, beta chain [Vibrio cholerae 1587]
 gi|150422971|gb|EDN14921.1| DNA polymerase III, beta chain [Vibrio cholerae AM-19226]
 gi|229342779|gb|EEO07770.1| DNA polymerase III beta subunit [Vibrio cholerae TM 11079-80]
          Length = 366

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|330447268|ref|ZP_08310918.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
 gi|328491459|dbj|GAA05415.1| DNA polymerase III, beta subunit [Photobacterium leiognathi subsp.
           mandapamensis svers.1.1.]
          Length = 366

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 114/386 (29%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREHLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALD 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G++TV +    DI R L   A IS   E   G  V I  G S + L + P ++FP
Sbjct: 61  GEFESGAVTVPSRKFLDICRGLPSSASISVSYE---GDRVLIRSGRSRYTLTTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    ++ L++ T F+MA +++RYYLNG+ F  + + L+  +VATDGH
Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  ++   ++     IIVPRK V E++R+  + ++ V + +  S I   + +   + 
Sbjct: 176 RMAVCAINTGHELP-TKQIIVPRKGVLELVRLFDNPEAEVNIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P ++ K +   C  +R A  R +I+S+ + + V+++LS+ ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEIRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+   I
Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D          A YV+MP+R+
Sbjct: 350 EDSNNDE---------AMYVVMPIRL 366


>gi|114568556|ref|YP_755236.1| DNA polymerase III subunit beta [Maricaulis maris MCS10]
 gi|114339018|gb|ABI64298.1| DNA polymerase III, beta subunit [Maricaulis maris MCS10]
          Length = 372

 Score =  375 bits (963), Expect = e-102,   Method: Composition-based stats.
 Identities = 148/387 (38%), Positives = 222/387 (57%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++E++NTIP+  +VL+ A        A+  +IEI     AS
Sbjct: 1   MKLTIERATLLKALGHVQAVVEKRNTIPILSNVLISAGPDGASFAATDLDIEILETTDAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G +T  AH LYDI RKL DGA ++  + N     + +  G S+F L S P  +FP 
Sbjct: 61  CDGEGLVTAPAHTLYDITRKLPDGADVT-LEMNGSDPRLTLKAGRSSFSLPSLPPGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              E+  + F++ +  L  L+++T FA++TEE RYYLNGI  H  ++D +  L AVATDG
Sbjct: 120 MPTEDLEHRFQVPARELARLIDKTRFAISTEETRYYLNGIHLHAADQDGRKTLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+AEVD+      MP +IVPRK V E+ R+L   D  V+VS+SE +I   +    ++
Sbjct: 180 VRLALAEVDLPDGADGMPGVIVPRKTVQEVKRLLEDADDDVEVSVSEGKIRFRLGRAVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ VIP  N + + V      +AVDRV+ +S  + ++VKLSL +D L + 
Sbjct: 240 SKLIDGAFPDYERVIPRGNTRLMSVENKRFAEAVDRVATISVEKSRSVKLSLGADALTLA 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NP+ G+A E + V Y++    I FN +Y+L++   I       DE  F    + S   
Sbjct: 300 VNNPESGQAEEELAVSYSDEGFAIGFNARYMLDVASQIEG-----DEARFHFADAASPAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +               +A YVLMP+R+
Sbjct: 355 VTD---------SGDPDALYVLMPLRV 372


>gi|307295044|ref|ZP_07574886.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1]
 gi|306879518|gb|EFN10736.1| DNA polymerase III, beta subunit [Sphingobium chlorophenolicum L-1]
          Length = 370

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 149/387 (38%), Positives = 238/387 (61%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A+ DG +++ A+  +++I  ++ A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEASSDGAIKLMATDLDLQIVESVSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ T+SAH L+DI RKL +G+Q+S         ++ I  G + F L + P  +FP
Sbjct: 61  QVEQAGATTISAHTLFDIARKLPEGSQVSLHAAE---GKMLIQAGRARFNLSTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178
              E +   SFEL +  LK ++++T FA++TEE RYYLNGI+FH++++    L A ATDG
Sbjct: 118 VIAEGDLPTSFELPAETLKQIIDKTRFAISTEETRYYLNGIYFHVSDDGQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   V        MP IIVPRK +GE+ ++L   + SV++SLS S+I   + S  ++
Sbjct: 178 HRLARVTVPRPDGADGMPGIIVPRKCIGELRKLLDEVEGSVQISLSASKIRFGLGSAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDK L+++  +  + VDRV+ +++ + +AVK++L  DK+ ++
Sbjct: 238 SKLIDGTFPDYSRVIPTANDKLLKIDPRSFEEGVDRVATIATEKTRAVKMTLDRDKITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   +     DI FN +YLL+I+  I SD      V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGAFQGEGFDIGFNARYLLDILGQIDSDL-----VELHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR         +D++  A YVLMPMR+
Sbjct: 353 IR---------EDDRSPALYVLMPMRV 370


>gi|312112797|ref|YP_004010393.1| DNA polymerase III subunit beta [Rhodomicrobium vannielii ATCC
           17100]
 gi|311217926|gb|ADP69294.1| DNA polymerase III, beta subunit [Rhodomicrobium vannielii ATCC
           17100]
          Length = 373

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 158/388 (40%), Positives = 238/388 (61%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M+  V+R+ +L  LGH   I+ER+NTIP+  ++L+ A+ DG L  KA+  ++E   A+PA
Sbjct: 1   MRFVVDRNAMLRALGHITGIVERRNTIPILSNILIGADRDGGLTFKATDLDMEAVEAVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+V G++TV AH L+DIVRKL DGA+I   ++ E G  + ++ G ++F L   P  +FP
Sbjct: 61  KVEVTGAVTVPAHTLHDIVRKLPDGAEIRIERKGEEG-RLKVATGRASFELAILPADDFP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATD 177
              + E    F + S  LK L E+  FA++TEE RYYLNGI+ H  +  E  KL AVATD
Sbjct: 120 DMGQTELPTRFTVDSGELKRLFEKARFAISTEETRYYLNGIYLHAVDGPEGGKLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  E    A    MP +IVPRKAVGE++++L S  + V+V+LS ++I   +  + +
Sbjct: 180 GHRLAQVETACPAGAGGMPGVIVPRKAVGEVIKLLESGAAPVEVTLSPAKIRFAVGDVVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP +N K L +   +L +AVDRVS +SS + +AVKL+ +  +L +
Sbjct: 240 TSKLIDGSFPDYARVIPTTNKKLLLLENADLVKAVDRVSTLSSEKGRAVKLNAAEGRLVV 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           + +NP+ G A E ++  Y + P++I FN +YLL+I   I   +      +F+L   +S  
Sbjct: 300 SANNPESGSATEEISAEYQDEPLEIGFNARYLLDITGQIDGTK-----ALFKLADGSSPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I         + +   +A YVLMPMR+
Sbjct: 355 LI---------SDETDASALYVLMPMRV 373


>gi|258622959|ref|ZP_05717974.1| DNA polymerase III, beta chain [Vibrio mimicus VM573]
 gi|258626083|ref|ZP_05720934.1| DNA polymerase III, beta chain [Vibrio mimicus VM603]
 gi|262172779|ref|ZP_06040457.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451]
 gi|258581609|gb|EEW06507.1| DNA polymerase III, beta chain [Vibrio mimicus VM603]
 gi|258584742|gb|EEW09476.1| DNA polymerase III, beta chain [Vibrio mimicus VM573]
 gi|261893855|gb|EEY39841.1| DNA polymerase III beta subunit [Vibrio mimicus MB-451]
          Length = 366

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       + V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----ENVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|332304388|ref|YP_004432239.1| DNA polymerase III, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
 gi|332171717|gb|AEE20971.1| DNA polymerase III, beta subunit [Glaciecola agarilytica
           4H-3-7+YE-5]
          Length = 367

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 220/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R + L+ L      +ER++T+P+  +VL++ +D  L +  +  E+E+   +  +
Sbjct: 1   MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDNALWLTGTDLEVELISNVTLT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L DI+R L +G++ISF  +   G++  I  G S + L +   +++P
Sbjct: 61  GELEEGEITVPAKKLLDIIRGLAEGSEISFHID---GSKAIIRCGRSKYSLSTLSATDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    FE++ S LK L++  HF+MA +++RYYLNG+      ED  +  VATDGH
Sbjct: 118 NLEDWQGELEFEISQSNLKRLIDSVHFSMAQQDVRYYLNGMSLET--EDNVIRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++          +I+PRK V EI R++   D S+KV +  + I +       + 
Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+ A  R SI+S+ + + V+L+LSS ++ +T 
Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A+E ++V Y    ++I FN  YL+++++ +++     +EV F L  SNSS  I
Sbjct: 296 NNPEQEEAVEIVDVDYQGDDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MPMR+
Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367


>gi|91228347|ref|ZP_01262275.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01]
 gi|91188107|gb|EAS74411.1| DNA polymerase III subunit beta [Vibrio alginolyticus 12G01]
          Length = 366

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 221/386 (57%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVMLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + + + + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLADTEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|104779318|ref|YP_605816.1| DNA polymerase III subunit beta [Pseudomonas entomophila L48]
 gi|95108305|emb|CAK12999.1| DNA polymerase III, beta chain [Pseudomonas entomophila L48]
          Length = 367

 Score =  374 bits (962), Expect = e-102,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L   A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPSDALIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     + +L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTCQLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSPGTLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +      A    +IVPRK + E+ R+L+  + +V + L +  I       + + 
Sbjct: 176 RLALCAMQAPIDQADRHQVIVPRKGILELARLLTDPEGTVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVDYNGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    D         ++ YV+MPMR+
Sbjct: 351 QEAGND---------DSSYVVMPMRL 367


>gi|269962692|ref|ZP_06177037.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3]
 gi|269832615|gb|EEZ86729.1| DNA polymerase III, beta chain [Vibrio harveyi 1DA3]
          Length = 366

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEENVLSMTATDLEVELVSKVALE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  S L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S  K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       D V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|15640045|ref|NP_062597.1| DNA polymerase III subunit beta [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121727891|ref|ZP_01680950.1| DNA polymerase III, beta chain [Vibrio cholerae V52]
 gi|147674757|ref|YP_001218399.1| DNA polymerase III subunit beta [Vibrio cholerae O395]
 gi|153819849|ref|ZP_01972516.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457]
 gi|153821934|ref|ZP_01974601.1| DNA polymerase III, beta chain [Vibrio cholerae B33]
 gi|227080250|ref|YP_002808801.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2]
 gi|229508298|ref|ZP_04397802.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286]
 gi|229508863|ref|ZP_04398354.1| DNA polymerase III beta subunit [Vibrio cholerae B33]
 gi|229517134|ref|ZP_04406580.1| DNA polymerase III beta subunit [Vibrio cholerae RC9]
 gi|229606572|ref|YP_002877220.1| DNA polymerase III subunit beta [Vibrio cholerae MJ-1236]
 gi|254851578|ref|ZP_05240928.1| DNA polymerase III subunit beta [Vibrio cholerae MO10]
 gi|262155884|ref|ZP_06029006.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1]
 gi|262167101|ref|ZP_06034816.1| DNA polymerase III beta subunit [Vibrio cholerae RC27]
 gi|298501198|ref|ZP_07010997.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757]
 gi|14547987|sp|Q9KVX5|DPO3B_VIBCH RecName: Full=DNA polymerase III subunit beta
 gi|9654404|gb|AAF93191.1| DNA polymerase III, beta chain [Vibrio cholerae O1 biovar El Tor
           str. N16961]
 gi|121629835|gb|EAX62250.1| DNA polymerase III, beta chain [Vibrio cholerae V52]
 gi|126509610|gb|EAZ72204.1| DNA polymerase III, beta chain [Vibrio cholerae NCTC 8457]
 gi|126520554|gb|EAZ77777.1| DNA polymerase III, beta chain [Vibrio cholerae B33]
 gi|146316640|gb|ABQ21179.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
 gi|227008138|gb|ACP04350.1| DNA polymerase III, beta chain [Vibrio cholerae M66-2]
 gi|227011984|gb|ACP08194.1| DNA polymerase III, beta chain [Vibrio cholerae O395]
 gi|229346197|gb|EEO11169.1| DNA polymerase III beta subunit [Vibrio cholerae RC9]
 gi|229354138|gb|EEO19070.1| DNA polymerase III beta subunit [Vibrio cholerae B33]
 gi|229354571|gb|EEO19493.1| DNA polymerase III beta subunit [Vibrio cholerae BX 330286]
 gi|229369227|gb|ACQ59650.1| DNA polymerase III beta subunit [Vibrio cholerae MJ-1236]
 gi|254847283|gb|EET25697.1| DNA polymerase III subunit beta [Vibrio cholerae MO10]
 gi|262024487|gb|EEY43173.1| DNA polymerase III beta subunit [Vibrio cholerae RC27]
 gi|262030336|gb|EEY48978.1| DNA polymerase III beta subunit [Vibrio cholerae INDRE 91/1]
 gi|297540070|gb|EFH76132.1| DNA polymerase III, beta subunit [Vibrio cholerae MAK 757]
          Length = 366

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNGMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|27364432|ref|NP_759960.1| DNA polymerase III subunit beta [Vibrio vulnificus CMCP6]
 gi|27360551|gb|AAO09487.1| DNA polymerase III, beta subunit [Vibrio vulnificus CMCP6]
          Length = 366

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L      +  + T+P+  ++L+   +G L + A+  E+E+   +   
Sbjct: 1   MKFTIARSHFIKPLQQVSGALGGRPTLPILGNLLINVENGQLSMTATDLEVELISKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV +    DI R L D A I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GEFEAGSITVPSRKFIDICRGLPDDAVITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L    L+ L+E+T F+MA +++RYYLNG+ F I  E   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQGELRALIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAALSADFAQ-KQIIVPRKGVQELVKLLDTPEQPVTLQIGSSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L  +C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTTKTLEASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       ++V   +  +N+S  +
Sbjct: 295 NNPEQEEAEEMLDVSFEGEAIEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|237806778|ref|YP_002891218.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187]
 gi|237499039|gb|ACQ91632.1| DNA polymerase III, beta subunit [Tolumonas auensis DSM 9187]
          Length = 367

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R  +L  L      I  + T+P+  +VLL   +  L +  +  E+E+ G +P +
Sbjct: 1   MQFSISRDSLLRPLQLVSGSIGGRPTLPILSNVLLNVTEQRLSLTGTDLEVEMIGLVPLA 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             V  GSIT  A  L DI R L DGAQ+ F  E   G  + +  G S + L + P +++P
Sbjct: 61  GAVAVGSITTPARKLLDICRGLPDGAQLDFVLE---GERLILRSGRSRYSLSTLPAADYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E   V  F+++   LK L+E T F+MA++++R+YLNG+ F  + + L+   V TDGH
Sbjct: 118 NIEEWNSVLEFDISQQELKRLMEATQFSMASQDVRFYLNGMLFETSGQGLR--TVGTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    +++ +      +I+PRK V E+ R+L + D ++++ +  + +    E    + 
Sbjct: 176 RLATCRREVLNEPQSDHQVILPRKGVLELARLLENDDRTIRLQIGLNNLRAEAEGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V P  +DK L      L+QA  R +I+S+ + + V+L L+++ L +T 
Sbjct: 236 KLVDGRFPDYRRVFPRQSDKILIAERELLKQAFSRAAILSNEKFRGVRLHLTTNLLHITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   +++ FN  Y+L++++ +       ++V + L  +NSS  +
Sbjct: 296 NNPEQEEAEELIDVQYDGPELEVGFNVSYVLDVLNALKC-----EQVKWYLTDANSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D         +A YV+MPMR+
Sbjct: 351 EDASND---------DAQYVVMPMRL 367


>gi|153827733|ref|ZP_01980400.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2]
 gi|229515948|ref|ZP_04405405.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21]
 gi|149737791|gb|EDM52696.1| DNA polymerase III, beta chain [Vibrio cholerae MZO-2]
 gi|229347048|gb|EEO12010.1| DNA polymerase III beta subunit [Vibrio cholerae TMA 21]
          Length = 366

 Score =  374 bits (962), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D  S         A YV+MP+R+
Sbjct: 350 ENVDDGS---------AMYVVMPIRL 366


>gi|156972778|ref|YP_001443685.1| DNA polymerase III subunit beta [Vibrio harveyi ATCC BAA-1116]
 gi|156524372|gb|ABU69458.1| hypothetical protein VIBHAR_00443 [Vibrio harveyi ATCC BAA-1116]
          Length = 366

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  + +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEENVLSMTATDLEVELVSKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  S L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +       D V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----DNVRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|304319870|ref|YP_003853513.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503]
 gi|303298773|gb|ADM08372.1| DNA polymerase III subunit beta [Parvularcula bermudensis HTCC2503]
          Length = 373

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 143/388 (36%), Positives = 232/388 (59%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ER+ +L+ L H   ++ER+NTIP+  +VL++A  G L + A+  +IEI   +PA 
Sbjct: 1   MQVTIERATLLKALHHTQSVVERRNTIPILSNVLMRAQGGSLALTATDLDIEIAETVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G +T SA  LYDIV++L DG QIS  K +   + + +  G S F L   P+ +FP+
Sbjct: 61  IAEEGGVTASAVTLYDIVKRLPDGGQISLNK-SSGSSRLMLKSGRSEFQLSILPDDDFPT 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
             +E    +F +++  L  L++RT FAM+ EE RYYLNG++ H     E    L AVATD
Sbjct: 120 LSDEAAGATFTISADALGRLLDRTRFAMSQEETRYYLNGVYLHALTEGEGAPSLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +  +      +P +I+PRKAV E+ R+L   D  V V+++ ++I      + +
Sbjct: 180 GHRLARLDSPLPPGAEAIPGVIIPRKAVLELRRLLDDADGDVAVTVTPAKIRFAFGDIVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  ND+ ++V+    R+AVDRVS +S+ + ++VKLSL+ D+L +
Sbjct: 240 VSKLIDGTFPDYQRVIPSGNDRVMKVDNDAFRRAVDRVSTVSADKTRSVKLSLTEDQLTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V+NP+ G A + ++V +    +++ FN +YLL+I     +D++  +  VF    + S  
Sbjct: 300 LVNNPETGSATDELSVDFKSTDLEVGFNARYLLDI-----ADQISGETAVFHFADAASPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  ++ +          A YVLMP+R+
Sbjct: 355 LVTDEEDE---------GALYVLMPLRV 373


>gi|209693644|ref|YP_002261572.1| DNA polymerase III subunit beta [Aliivibrio salmonicida LFI1238]
 gi|208007595|emb|CAQ77695.1| DNA polymerase III subunit beta-subunit [Aliivibrio salmonicida
           LFI1238]
          Length = 369

 Score =  374 bits (961), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 219/386 (56%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ L      +  + ++P+  ++LLQ  +G L + A+  E+E+   I   
Sbjct: 1   MKFSIERSHLLKPLQQVSGALGGRPSLPIFGNILLQVENGQLSMTATDLEVELISNILLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G+ITV +    DI R L DGA I+   E   G  V +  G S F L + P  +FP
Sbjct: 61  GDFEAGAITVPSRKFLDICRGLPDGANITIVLE---GDRVLVRSGRSRFTLATLPAQDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +      L+ + L+ L+E T F+MA +++RYYLNG+ F          +VATDGH
Sbjct: 118 NIEGWQSEVEITLSQAQLRKLIESTQFSMANQDVRYYLNGMMFETQGT--IFRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  + + +++ +   +I+PRK + E++R+L S + SV +    S +   + +   + 
Sbjct: 176 RMAVCNMPVESELPEQ-QVIMPRKGIQELVRLLDSPEQSVTLQFGNSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S++K L  +C  LRQA  R +I+S+ + + V+++L+++++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQSSNKTLEADCDELRQAFARAAILSNEKFRGVRVNLANNQMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L+++D +++ +   + V   + ++N+S  +
Sbjct: 295 NNPEQEEAEEILDVDFQGEDIEIGFNVSYVLDVLDVLNTLKC--ERVRISMTTANASALV 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 353 EDCANDE---------AQYVVMPIRL 369


>gi|149912067|ref|ZP_01900658.1| DNA polymerase III subunit beta [Moritella sp. PE36]
 gi|149804863|gb|EDM64900.1| DNA polymerase III subunit beta [Moritella sp. PE36]
          Length = 366

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R  +L  L      +  + T+P+  +VLL A +G L +  +  E+E+ G +   
Sbjct: 1   MQFTINREALLRPLQLVSGALGNRPTLPILGNVLLDAKEGKLTLTGTDLEVELIGQVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI R L D AQI     N+    + +  G S F L + P +EFP
Sbjct: 61  GEFTEGRTTVPAKKLLDICRGLPDSAQIQVSYAND---RIVVKSGRSRFSLSTLPATEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    FEL    L+ L++ T F+MA++++RYYLNG+ F      L+   VATDGH
Sbjct: 118 NIEDWDNDIEFELLQGSLRRLIDNTQFSMASQDVRYYLNGMLFETEGNILR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAVA  +  A + K   +IVPRK V E++R+L S++  VK+ L  + I         + 
Sbjct: 176 RLAVASCEHDANL-KQQQVIVPRKGVLELVRLLDSEEDMVKIQLGSNNIRAITSGFVFTC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L  +   L+QA  R +I+S+ + + V+L+++   L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNADKMLISSREELKQAFSRAAILSNEKFRGVRLNMNQGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +  ++     +   L  +NSS  I
Sbjct: 295 NNPEQEEAEELLDVAFAHDELEISFNVSYVLDVLNTLKCEK-----IKISLSDANSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  D          A YV+MPMR+
Sbjct: 350 EDEQSDQ---------ALYVVMPMRL 366


>gi|146305044|ref|YP_001185509.1| DNA polymerase III subunit beta [Pseudomonas mendocina ymp]
 gi|145573245|gb|ABP82777.1| DNA polymerase III, beta subunit [Pseudomonas mendocina ymp]
          Length = 367

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVTLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L   A I    +++   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPSDALIDIRVDDQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  + L+ L+ERT FAMA +++RYYLNG+   +      L AVATDGH
Sbjct: 118 TVEEGPGSLTFNLPQAKLRRLIERTSFAMAQQDVRYYLNGMLLEVQ--SGMLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++   Q      +IVPRK + E+ R+L+ +D+ V + L +  I  N    + + 
Sbjct: 176 RLAMCSMEAAIQQDGKHQVIVPRKGILELARLLTEQDAEVAIVLGQHHIRANTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L+L++  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVLADRQGLREAFSRTAILSNEKYRGIRLTLAAGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  YLL+++  + +     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEIVVDYAGGGLEIGFNVSYLLDVLGVMGT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QEADND---------DSAYVVMPMRL 367


>gi|312958104|ref|ZP_07772627.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6]
 gi|311287535|gb|EFQ66093.1| DNA polymerase III beta subunit [Pseudomonas fluorescens WH6]
          Length = 367

 Score =  374 bits (960), Expect = e-101,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 212/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++E  ++  AVATDGH
Sbjct: 118 TVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       + + 
Sbjct: 176 RLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|15595200|ref|NP_064722.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAO1]
 gi|107098996|ref|ZP_01362914.1| hypothetical protein PaerPA_01000002 [Pseudomonas aeruginosa PACS2]
 gi|116053722|ref|YP_788157.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa UCBPP-PA14]
 gi|218888748|ref|YP_002437612.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa LESB58]
 gi|254237755|ref|ZP_04931078.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719]
 gi|254243116|ref|ZP_04936438.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192]
 gi|296386474|ref|ZP_06875973.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PAb1]
 gi|313111476|ref|ZP_07797277.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016]
 gi|13959347|sp|Q9I7C4|DPO3B_PSEAE RecName: Full=DNA polymerase III subunit beta
 gi|9945820|gb|AAG03392.1|AE004440_2 DNA polymerase III, beta chain [Pseudomonas aeruginosa PAO1]
 gi|115588943|gb|ABJ14958.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa UCBPP-PA14]
 gi|126169686|gb|EAZ55197.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa C3719]
 gi|126196494|gb|EAZ60557.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 2192]
 gi|218768971|emb|CAW24729.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa LESB58]
 gi|310883779|gb|EFQ42373.1| DNA polymerase III, beta chain [Pseudomonas aeruginosa 39016]
          Length = 367

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 208/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +   I    E +   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F +A S L+ L++RT FAMA +++RYYLNG+   +      L +VATDGH
Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEV--NGGTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +D          +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L LS+  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  I +     ++V F L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D         ++ YV+MPMR+
Sbjct: 351 HEADND---------DSAYVVMPMRL 367


>gi|148555705|ref|YP_001263287.1| DNA polymerase III subunit beta [Sphingomonas wittichii RW1]
 gi|148500895|gb|ABQ69149.1| DNA polymerase III, beta subunit [Sphingomonas wittichii RW1]
          Length = 370

 Score =  373 bits (959), Expect = e-101,   Method: Composition-based stats.
 Identities = 154/387 (39%), Positives = 234/387 (60%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ LGH   ++ER+NTIP+  +VL++A  +G L + A+  +++I  A+PA
Sbjct: 1   MKATIERATLLKSLGHVQSVVERRNTIPILSNVLIEATAEGTLRLMATDLDLQIVEAVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +VD  G+ TVSAH L+DI RKL +G+Q+          ++ +  G + F LQ+ P+ +FP
Sbjct: 61  AVDQPGATTVSAHTLFDIARKLPEGSQVQLSAAE---GKMQVVAGRARFNLQTLPKDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178
              E E    FEL +  LK L+++T FA++TEE RYYLNGIFFH+ +E    L A ATDG
Sbjct: 118 MIAEGELPTRFELPAETLKQLIDKTRFAISTEETRYYLNGIFFHVQDEGSPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   +        MP II+PRK VGE+ ++L   D SV ++LS ++I   + +  ++
Sbjct: 178 HRLARVTIARPDGAEGMPDIIIPRKCVGELRKLLDEVDGSVDITLSSTKIRFGLGTAILT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDK L+++  +  + VDRV+ ++S + +AVK++L  DK+ ++
Sbjct: 238 SKLIDGTFPDYNRVIPTANDKLLKIDPKSFMEGVDRVATIASEKTRAVKMALDRDKITLS 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +P+ G A E +   Y     +I FN +YLL+I+  I       D V   L  + +   
Sbjct: 298 VTSPENGTAAEEVPGDYAATGFEIGFNARYLLDILGQIDG-----DTVEVHLADAAAPTL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR  DK           A YVLMPMR+
Sbjct: 353 IRENDKAP---------ALYVLMPMRV 370


>gi|109896334|ref|YP_659589.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c]
 gi|109698615|gb|ABG38535.1| DNA polymerase III, beta subunit [Pseudoalteromonas atlantica T6c]
          Length = 367

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 219/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R + L+ L      +ER++T+P+  +VL++ +D  L +  +  E+E+   +  +
Sbjct: 1   MKFSISRENFLQPLQLVSGAVERRHTLPILSNVLIKVSDSALWLTGTDLEVELISNVTLT 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G ITV A  L DI+R L +G++ISF  +   G +  +  G S + L +   +++P
Sbjct: 61  GDFEEGEITVPAKKLLDIIRGLTEGSEISFHVD---GNKAILRCGRSKYSLSTLSANDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    FE++ + LK L++  HF+MA +++RYYLNG+      ED  +  VATDGH
Sbjct: 118 NLEDWQGELEFEISQANLKRLIDSVHFSMAQQDVRYYLNGMSLET--EDNVIRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++          +I+PRK V EI R++   D S+KV +  + I +       + 
Sbjct: 176 RLALCRLNYTDATLPNRQVIIPRKGVMEITRLIEDSDKSLKVQVGSNHIRIFSNDFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+ A  R SI+S+ + + V+L+LSS ++ +T 
Sbjct: 236 KLVDGRFPDYRRVLPKDGDKNIIASKLGLKNAFSRASILSNEKFKGVRLNLSSGEVKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A+E ++V Y    ++I FN  YL+++++ +++     +EV F L  SNSS  I
Sbjct: 296 NNPEQEEAVEIVDVDYQGGDLEIGFNVAYLIDVLNALNA-----EEVKFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MPMR+
Sbjct: 351 EDGSDDS---------ALYVIMPMRL 367


>gi|297581953|ref|ZP_06943873.1| DNA polymerase subunit III [Vibrio cholerae RC385]
 gi|297533820|gb|EFH72661.1| DNA polymerase subunit III [Vibrio cholerae RC385]
          Length = 366

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK   E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGGLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQAGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +N+S  +
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDANASALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENVDDDS---------AMYVVMPIRL 366


>gi|325275333|ref|ZP_08141284.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51]
 gi|324099524|gb|EGB97419.1| DNA polymerase III subunit beta [Pseudomonas sp. TJI-51]
          Length = 367

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLLKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+TDGH
Sbjct: 118 TVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    +      +IVPRK + E+ R+L+  +  V + L +  I       + + 
Sbjct: 176 RLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R SI+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKVVVGDRQALREAFSRTSILSNEKYRGIRLQLAAGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVDYDGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    D         ++ YV+MPMR+
Sbjct: 351 QEAGND---------DSSYVVMPMRL 367


>gi|319898310|ref|YP_004158403.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73]
 gi|319402274|emb|CBI75813.1| DNA polymerase III, beta chain [Bartonella clarridgeiae 73]
          Length = 373

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 153/387 (39%), Positives = 239/387 (61%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I + RS +L+ L    R++ER+N IP+  +VL+ A+ G +++KA+  ++E+  +   +
Sbjct: 1   MRIIIGRSQLLKSLSRVHRVVERRNAIPILSNVLIDASSGGMQLKATDLDLEVIESSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D +++    +    + ++++ G +NF LQ  P+ +FP 
Sbjct: 61  IEKAGAITVPAHLLYDIVRKLPDDSEVILEVDENQPSTMSVTSGCANFRLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FHI ++   KL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHIIDDGTSKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  +    MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ ++
Sbjct: 181 RLAQVDIEAPSGAGGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L +N  +   AVDRVS +SS R  AVKL++    L   
Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLVINRQDFSSAVDRVSTISSDRGCAVKLTIEKGLLRFV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y    ++I FN +YLL+I   ISS      E++F L    +   
Sbjct: 301 VNNPDSGSAEDQLVADYASDLLEIGFNSRYLLDIAAQISSH-----EMIFMLADPGAPAL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IRG         +   NA YVLMP+R+
Sbjct: 356 IRG---------NGDTNALYVLMPIRV 373


>gi|310816810|ref|YP_003964774.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25]
 gi|308755545|gb|ADO43474.1| DNA polymerase III, beta subunit [Ketogulonicigenium vulgare Y25]
          Length = 372

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 144/387 (37%), Positives = 232/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ERS +L+ +  A  ++ER+N IP+  +VL+ A    ++ +A+  +IE+  +  A 
Sbjct: 1   MKFSIERSALLKAVAQAQSVVERRNAIPILSNVLIAAEGAAVQFRATDLDIEVQDSAVAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A +L +IVRKL DGA ++   +      + I+ G S F L + P+ +FP+
Sbjct: 61  VEQAGAATVNAAMLNEIVRKLPDGALVAITYD-PSAERLTIAAGRSTFTLATLPQQDFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               ++  SF   + +L+ L +++ FA++TEE RYYLNG++FHI   EE   L AVATDG
Sbjct: 120 MASADFEASFTAPAPLLRRLFDKSKFAISTEETRYYLNGVYFHIATGEEGPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +    A MP +IVPRK VGE+ ++L   ++ + VS+SE++I     +++++
Sbjct: 180 HRLARIDAPLPDGAAGMPGVIVPRKTVGELRKLLDDDNALIAVSVSETKIRFATPNITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPTGNTRRLEVDAAEFAKAVDRVATVSSERSRAVKLALEDDRLLLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V +PD G A E + V Y +  ++I FN KYL EI     + +V  +  VF L+       
Sbjct: 300 VQSPDTGAAEEELVVAYADERLEIGFNAKYLQEI-----AAQVDRENAVFMLNGPGDPAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R         +    +A YV+MPMR+
Sbjct: 355 MR---------EGGDTSAVYVVMPMRV 372


>gi|218708099|ref|YP_002415720.1| DNA polymerase III subunit beta [Vibrio splendidus LGP32]
 gi|218321118|emb|CAV17068.1| DNA polymerase III beta subunit [Vibrio splendidus LGP32]
          Length = 366

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++        +  + L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGH
Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEVLDVNFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MP+R+
Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366


>gi|90581123|ref|ZP_01236922.1| DNA polymerase III subunit beta [Vibrio angustum S14]
 gi|90437644|gb|EAS62836.1| DNA polymerase III subunit beta [Vibrio angustum S14]
          Length = 366

 Score =  373 bits (958), Expect = e-101,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVALE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L   A IS   E   G  V I    S + L + P ++FP
Sbjct: 61  GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F L    ++ L++ T F+MA +++RYYLNG+ F  + + L+  +VATDGH
Sbjct: 118 NIEDWQSEVEFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D   ++     IIVPRK V E++R+  + +S V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDTGHELP-TKQIIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P ++ K +   C  +R A  R +I+S+ + + V+++LS+ ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+   I
Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 350 EDATNDE---------AMYVVMPIRL 366


>gi|329894831|ref|ZP_08270631.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088]
 gi|328922725|gb|EGG30059.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC3088]
          Length = 375

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/393 (31%), Positives = 212/393 (53%), Gaps = 26/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ER  +++ L     ++ER+ T+P+  +VL+      L +  +  E+E+TG +   
Sbjct: 1   MKFSIEREALVKPLSLVAGVVERRQTLPILANVLVNVEGSQLSLVGTDLEVELTGRVTLE 60

Query: 61  VDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                 GS+TV    L+DI + L DG+ I   ++   G ++ +  G S F L + P +EF
Sbjct: 61  DSDSVSGSVTVPGRKLFDICKSLPDGSVIELAQD---GAKLVVKSGRSRFSLATLPATEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P         S  +    LK L+E+T FAMA +++RYYLNG+ + +N    ++  VATDG
Sbjct: 118 PLVDSLNVRGSMTVDQQALKALIEQTGFAMAQQDVRYYLNGMLWELNANQFRV--VATDG 175

Query: 179 HRLAVAEVDIVAQI------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           HRLA + + +   +           II+PRK V E+ R+L   D+  +V+L ++ + +  
Sbjct: 176 HRLATSHIVLSEGVVQGLSGPDATQIILPRKGVLELSRLLQPGDAPAEVALGDNHLKVET 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            S +   +L+DG+FP+YQ V+P ++ K +      L+ A+ R +I+S+ + + ++L LSS
Sbjct: 236 ASFTFISKLVDGKFPDYQRVLPKNSTKTVVGERDVLKSALSRAAILSNEKYRGIRLHLSS 295

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D+L +  +NP+  +A E ++V Y   P++I FN  YLL+++  I      +D V   L  
Sbjct: 296 DQLQVVANNPEQEEAEEIISVDYQGEPLEIGFNVSYLLDVLGVIH-----EDSVKVSLSD 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + S  +   D+          NA YV+MPMR+
Sbjct: 351 PSGSALLEAADE--------HANAMYVVMPMRL 375


>gi|254784275|ref|YP_003071703.1| DNA polymerase III subunit beta [Teredinibacter turnerae T7901]
 gi|237687276|gb|ACR14540.1| DNA polymerase III, beta subunit [Teredinibacter turnerae T7901]
          Length = 367

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  +++ L     ++ER+ T+ V  +VL++     L +  +  E+EI G +   
Sbjct: 1   MKFTVSREALIKPLQLVAGVVERRQTMAVLANVLMEIEGDQLSLTGTDLEVEIIGRVQLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A    DI R L D + I F  +++   +  +  G S F L + P +EFP
Sbjct: 61  SAPGNGEITVPAKKFLDICRSLPDKSVIEFSLQDQ---KATVKSGKSRFTLSTLPANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++     +       +K L++RT FAMA +++RYYLNG+ + +   ++++  VATDGH
Sbjct: 118 AVEQGSNDINISCEQKEIKRLIDRTAFAMAQQDVRYYLNGMLWELRPGEIRV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV    +   ++++   I+PRK V E+ R+L+  +  V+VSL  S +  +    + + 
Sbjct: 176 RLAVCSRPVDVDVSEIKQAILPRKGVIELARLLNDSEDGVEVSLGSSHMRASTAEYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  N ++L+QA  R SI+S+ + + V+L L +  L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKVVLGNRSDLKQAFARTSILSNEKYRGVRLELVAGSLTIIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A + + V YN   +++ FN  YL ++ + + S     + +   L  SNSS  +
Sbjct: 296 NNPEQEEAQDQVEVDYNGDALEVGFNVSYLQDVANVLDS-----ENIKITLSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           ++ YV+MPMR+
Sbjct: 351 EEPEN---------SDSSYVVMPMRL 367


>gi|28867245|ref|NP_789864.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213968440|ref|ZP_03396583.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|301384272|ref|ZP_07232690.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           Max13]
 gi|302063878|ref|ZP_07255419.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           K40]
 gi|302131961|ref|ZP_07257951.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tomato
           NCPPB 1108]
 gi|28850479|gb|AAO53559.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
           str. DC3000]
 gi|213926728|gb|EEB60280.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv. tomato
           T1]
 gi|331017724|gb|EGH97780.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           lachrymans str. M302278PT]
          Length = 367

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +  +LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQSLREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEIGVEYNGEALEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|86147176|ref|ZP_01065492.1| DNA polymerase III subunit beta [Vibrio sp. MED222]
 gi|85835060|gb|EAQ53202.1| DNA polymerase III subunit beta [Vibrio sp. MED222]
          Length = 366

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++L++  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRIQVRSGRSRFSLATLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++        +  + L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGH
Sbjct: 118 NIEDWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L   ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                DS         A YV+MP+R+
Sbjct: 350 ENAQDDS---------AMYVVMPIRL 366


>gi|90019651|ref|YP_525478.1| DNA polymerase III subunit beta [Saccharophagus degradans 2-40]
 gi|89949251|gb|ABD79266.1| DNA polymerase III, beta subunit [Saccharophagus degradans 2-40]
          Length = 367

 Score =  373 bits (957), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 206/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  IL+ L     ++ER+ T+PV  +VL+      L +  +  E+EI G +   
Sbjct: 1   MKFIVSRETILKPLQLVAGVVERRQTLPVLANVLIVLEGEQLSLTGTDLEVEIVGRVTVD 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A    DI R L DG+ I F  +++   +V +  G S F L S   +EFP
Sbjct: 61  QAISEGEITVPAKKFLDICRALPDGSVIEFTLDDQ---KVTVKSGRSRFTLSSLSANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++     +F      +K L++RT FAMA +++RYYLNG+ + +    L++  V+TDGH
Sbjct: 118 AVEQGSNDINFSCEQKEVKRLIDRTAFAMAQQDVRYYLNGMLWEVRAGALRV--VSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    I   +A+    I+PRK V E+ R+L+  + +V++++  + I       + + 
Sbjct: 176 RLAMCTRPINIDVAEPVQAILPRKGVIELSRLLNDSEENVELTMGPNHIRATTTEYTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +      L+QA  R +I+S+ + + V+L L + +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKIVLGERAVLKQAFARTAILSNEKYRGVRLLLETGQLTIIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A + + V Y    +++ FN  YL ++ + + +D+     +   L  SNSS  +
Sbjct: 296 NNPEQEEAEDQVAVEYEGDSIEVGFNVSYLQDVTNVLDTDK-----IKMTLSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           ++ YV+MPMR+
Sbjct: 351 EEPEN---------ADSVYVVMPMRL 367


>gi|26986756|ref|NP_742181.1| DNA polymerase III subunit beta [Pseudomonas putida KT2440]
 gi|148545261|ref|YP_001265363.1| DNA polymerase III subunit beta [Pseudomonas putida F1]
 gi|60392201|sp|P0A120|DPO3B_PSEPK RecName: Full=DNA polymerase III subunit beta
 gi|60392202|sp|P0A121|DPO3B_PSEPU RecName: Full=DNA polymerase III subunit beta
 gi|24981347|gb|AAN65645.1|AE016191_2 DNA polymerase III, beta subunit [Pseudomonas putida KT2440]
 gi|45691|emb|CAA32894.1| unnamed protein product [Pseudomonas putida]
 gi|148509319|gb|ABQ76179.1| DNA polymerase III, beta subunit [Pseudomonas putida F1]
 gi|313496419|gb|ADR57785.1| DnaN [Pseudomonas putida BIRD-1]
          Length = 367

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+TDGH
Sbjct: 118 TVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    +      +IVPRK + E+ R+L+  +  V + L +  I       + + 
Sbjct: 176 RLALCSMSAPIEQEDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVDYEGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    D         ++ YV+MPMR+
Sbjct: 351 QEAGND---------DSSYVVMPMRL 367


>gi|89074701|ref|ZP_01161159.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34]
 gi|89049465|gb|EAR55026.1| DNA polymerase III subunit beta [Photobacterium sp. SKA34]
          Length = 366

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + ++P+  ++LL+  DG L +  +  E+E+   +   
Sbjct: 1   MKFTVEREYLLKPLQQVAAALGGRPSLPILGNILLKVEDGCLSMTGTDLEVELIAKVVLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G++TV +    DI R L   A IS   E   G  V I    S + L + P ++FP
Sbjct: 61  GDYESGTVTVPSRKFLDICRGLPSNATISVSYE---GDRVLIRSSRSRYTLTTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +   +F L    ++ L++ T F+MA +++RYYLNG+ F  + + L+  +VATDGH
Sbjct: 118 NIEDWQSEVAFTLEQGRMRQLIDSTQFSMANQDVRYYLNGMLFETDGQHLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D   ++     +IVPRK V E++R+  + +S V + +  S I   + +   + 
Sbjct: 176 RMAVCAIDTGHELP-TKQVIVPRKGVLELVRLFDNPESLVNIQIGNSNIRATVNNFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P ++ K +   C  +R A  R +I+S+ + + V+++LS+ ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMPQNSTKFVEAGCEEMRNAFARAAILSNEKFRGVRVNLSNGEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +       D+V   L  +N+   I
Sbjct: 295 NNPEQEEAEEFLDVDYQGDSLEIGFNVSYVLDVLNTLKC-----DQVRLSLSDANAPSLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D          A YV+MP+R+
Sbjct: 350 EDATNDE---------AMYVVMPIRL 366


>gi|152987905|ref|YP_001345398.1| DNA polymerase III subunit beta [Pseudomonas aeruginosa PA7]
 gi|150963063|gb|ABR85088.1| DNA polymerase III, beta subunit [Pseudomonas aeruginosa PA7]
          Length = 367

 Score =  372 bits (956), Expect = e-101,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L     I    E +   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPSDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F +A S L+ L++RT FAMA +++RYYLNG+   +N   L+  +VATDGH
Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEVNGGALR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +D          +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L LS+  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVIGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  I +     ++V F L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D         ++ YV+MPMR+
Sbjct: 351 HEADND---------DSAYVVMPMRL 367


>gi|332187226|ref|ZP_08388965.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
 gi|332012647|gb|EGI54713.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
          Length = 380

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 155/388 (39%), Positives = 230/388 (59%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VLL+A  +G L + A+  +++I  ++ A
Sbjct: 10  MKATIERATLLKGLSHVQSVVERRNTIPILSNVLLEATAEGQLRMMATDLDLQINDSVAA 69

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +VD  GS TVSAH L+DI RKL +GAQ+           + I  G + F L + P  +FP
Sbjct: 70  AVDQPGSTTVSAHTLFDIARKLPEGAQVQLTAAE---GRMTIVAGRARFSLGTLPRDDFP 126

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
              E E    FEL   +LK ++++T FA++TEE RYYLNGIF H+ E++    L A ATD
Sbjct: 127 VIAEGELPTQFELPVELLKQIIDKTRFAISTEETRYYLNGIFLHVAEDNGAPVLKAAATD 186

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA   ++       MP +IVPRK V E+ ++L   D SV VSLS ++I  ++    +
Sbjct: 187 GHRLARVTIERPNGAEGMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGTKIRFDLGQAIL 246

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP +NDK L+++     Q VDRVS +++ + +AVK++L  D++ +
Sbjct: 247 TSKLIDGTFPDYSRVIPTANDKILKLDPKAFMQGVDRVSTIATEKTRAVKMALDRDRITL 306

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V +P+ G A E +   Y   P +I FN +YLL+I+  I SD      V   L  + +  
Sbjct: 307 SVTSPENGTASEEVPGEYTSLPFEIGFNSRYLLDILGQIDSDL-----VEVHLADAAAPT 361

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IR  DK           A YVLMPMR+
Sbjct: 362 LIRENDKAP---------ALYVLMPMRV 380


>gi|269103821|ref|ZP_06156518.1| DNA polymerase III beta subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
 gi|268163719|gb|EEZ42215.1| DNA polymerase III beta subunit [Photobacterium damselae subsp.
           damselae CIP 102761]
          Length = 365

 Score =  372 bits (955), Expect = e-101,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 217/386 (56%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R  +L+ L      +  + ++P+  ++LLQ  +GLL +  +  E+E+   I   
Sbjct: 1   MKFTLAREQLLKPLQQVSGAL-GRPSLPILGNILLQVEEGLLSLTGTDLEVELVAKIVLE 59

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ITV +    DI R L D A IS   E   G    I  G S + L + P S+FP
Sbjct: 60  GEFEAGAITVPSRKFLDICRGLPDSATISVSVE---GDRALIRSGRSRYSLATLPASDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  S L+ L++ T F+MA +++RYYLNG+ F  + + L+   VATDGH
Sbjct: 117 NIDDWQSEVEFELEQSRLRQLIDSTQFSMAHQDVRYYLNGMLFETDGKLLR--TVATDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV  +D    +     II+PRK V E++R+L + ++ V++ +  S +   + +   + 
Sbjct: 175 RMAVCAIDTAYDVP-SKQIILPRKGVLELVRLLDNPEAPVQIQIGGSNLRATVNNFVFTS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P +++K +  +C  LR+A  R +I+S+ + + V+++L++ ++ +T 
Sbjct: 234 KLVDGRFPDYRRVLPQNSNKFVTASCDELRKAFSRAAILSNEKFRGVRVNLAAGEMRITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  Y+L++++ +       ++V   L  +N+S  +
Sbjct: 294 NNPEQEEAEEFLDVDYQGEPIEIGFNVSYVLDVLNTLKC-----EQVKMSLTDANASALL 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D         +A YV+MP+R+
Sbjct: 349 EDNAVD---------DAMYVVMPIRL 365


>gi|117619320|ref|YP_854529.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
 gi|117560727|gb|ABK37675.1| DNA polymerase III, beta subunit [Aeromonas hydrophila subsp.
           hydrophila ATCC 7966]
          Length = 367

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 213/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  +L  L      +  + T+P+  +VLL  ++GLL +  +  E+E+ G +  +
Sbjct: 1   MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DI R L +GA I     N  G  + I  G S F L + P +E+P
Sbjct: 61  SDSQDGRTTVPARKLLDICRGLPEGADIRL---NTEGERLIIRSGRSRFNLSTLPATEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E V  F++    LK L++ T F+MA++++RYYLNG+ F      L+   VATDGH
Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    ++V +      +I+PRK V E++R+L ++D  V++ +  S +   ++    + 
Sbjct: 176 RLATCRREVVTESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+++ VIP ++DK L     +LRQA  R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       D++   L  S SS  I
Sbjct: 296 NNPEQEEAEELLDVQYEAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           +A YV+MPMRI
Sbjct: 351 EDFD---------SQDAQYVVMPMRI 367


>gi|229587580|ref|YP_002869699.1| DNA polymerase III subunit beta [Pseudomonas fluorescens SBW25]
 gi|229359446|emb|CAY46287.1| DNA polymerase III, beta chain [Pseudomonas fluorescens SBW25]
          Length = 367

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 210/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    +     ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVDE---AKLVVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++E  ++  AVATDGH
Sbjct: 118 TVEEGPGSLTCSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSEGIIR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +           +IVPRK + E+ R+L+  + +V + L +  I       + + 
Sbjct: 176 RLAMCSMRADIGQPDRHQVIVPRKGILELARLLTEPEGNVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVGVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|319403602|emb|CBI77187.1| DNA polymerase III, beta chain [Bartonella rochalimae ATCC
           BAA-1498]
          Length = 373

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 157/387 (40%), Positives = 241/387 (62%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ RS +L+ L    RI+ER+NTIP+  +VL+  +DG +++KA+  ++EI      +
Sbjct: 1   MRVTIGRSQLLKSLSRVHRIVERRNTIPILSNVLIDTSDGRMQLKATDLDLEIIETSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D + +         + ++I+ G +NF LQ  P+ +FP 
Sbjct: 61  LEQAGAITVPAHLLYDIVRKLPDDSDVILDVNENQASTMSITSGCTNFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FH+  +D LKL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASRLKYLLDCTQFAMSTEETRYYLNGIYFHVIYDDILKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++  +    MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ ++
Sbjct: 181 RLAQVDIEAPSGADGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L +N  +   AVDRVS +SS R +AVKL +    + + 
Sbjct: 241 SKLIDGVFPEYQRVIPLGNDKKLIINRQDFSAAVDRVSTISSDRGRAVKLMIEKGIVKLV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   +SS     DE++     S +   
Sbjct: 301 VNNPDSGSAKDQLVADYVFDPLEIGFNSRYLLDIAAQLSS-----DEMICMFADSAAPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IRG         +   NA YVLMP+R+
Sbjct: 356 IRG---------NGDTNALYVLMPVRV 373


>gi|298484610|ref|ZP_07002715.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
 gi|298160867|gb|EFI01883.1| DNA polymerase III beta subunit [Pseudomonas savastanoi pv.
           savastanoi NCPPB 3335]
          Length = 367

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDVKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|167031025|ref|YP_001666256.1| DNA polymerase III subunit beta [Pseudomonas putida GB-1]
 gi|166857513|gb|ABY95920.1| DNA polymerase III, beta subunit [Pseudomonas putida GB-1]
          Length = 367

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+TDGH
Sbjct: 118 TAEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    +      +IVPRK + E+ R+L+  +  V + L +  I       + + 
Sbjct: 176 RLALCSMTAPIEQDDRHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVVGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVDYKGSSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    D         ++ YV+MPMR+
Sbjct: 351 QEAGND---------DSSYVVMPMRL 367


>gi|308047724|ref|YP_003911290.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799]
 gi|307629914|gb|ADN74216.1| DNA polymerase III, beta subunit [Ferrimonas balearica DSM 9799]
          Length = 366

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 204/386 (52%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + R  +L+ L      +ER++ +P+  +VLL+ +  LL++  +  E+E+ G +   
Sbjct: 1   MQFVINRETLLKPLQLVSGAVERRHNLPILANVLLEVSGNLLKVTGTDLEVELIGQVEVE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A    DI + L D A++   +++     + I  G S F L + P  EFP
Sbjct: 61  GDIQPGRTTVPARKFLDICKSLPDQAELRIEQQD---NRLLIKSGRSRFSLSTLPADEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + +    F L   VLK+L+E T F+MA +++RYYLNG+ F      L+   VATDGH
Sbjct: 118 EIGDWKGELQFTLPQGVLKSLIEATQFSMAHQDVRYYLNGMLFETEGNVLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV+   I A + +   +IVPRK V E+ R+   + + + + + ES I         + 
Sbjct: 176 RLAVSHRVIEASLPE-KQVIVPRKGVIELSRLFEDEQAEITLCIGESSIRAVTRDAIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +      LRQA  R SI+S+ + + V+L L +D+L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKDGDKVVVAERDALRQAFARASILSNEKFRGVRLLLENDRLTITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E +++ Y    ++I FN  Y+L++++ +       + V   L  +NSS   
Sbjct: 295 NNPEQEEAEEVLDLAYPYTSLEIGFNVSYVLDVLNALK-----QENVKMVLGEANSSALF 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D          + YV+MPMR+
Sbjct: 350 ENADNDE---------SLYVVMPMRL 366


>gi|254295379|ref|YP_003061402.1| DNA polymerase III subunit beta [Hirschia baltica ATCC 49814]
 gi|254043910|gb|ACT60705.1| DNA polymerase III, beta subunit [Hirschia baltica ATCC 49814]
          Length = 374

 Score =  371 bits (954), Expect = e-101,   Method: Composition-based stats.
 Identities = 150/389 (38%), Positives = 231/389 (59%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++R  +++ L H   ++ER+NTIP+  +VL+ A    L + A+  ++E +    A 
Sbjct: 1   MKLTIDRGALMKALSHVQNVVERRNTIPILSNVLIDAEGTSLRLTATDLDMEASDTTIAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS+T  A  L+D+VRKL DG+ I    + E    + I+ G S F L + P  +F +
Sbjct: 61  IEKPGSVTAPAQTLFDVVRKLPDGSDIGLLLDTE-TRRLTITSGRSRFALPTLPADDFQT 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
             +EE   SFE+ ++  + L+++T FA++TEE RYYLNG++ H  E    +KL  VATDG
Sbjct: 120 MSKEEAPNSFEIPAADFRRLIDKTKFAISTEETRYYLNGVYMHGTEVGGAVKLRTVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236
           HRLA+AE D       +P II+PRKA+ EI R+L    +DS V VS SES+I + +    
Sbjct: 180 HRLALAEADAPKGAETLPGIIIPRKAIAEIRRLLDDAAQDSDVSVSTSESKIVVKVGDAV 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++ +LIDG FP+Y  VIP SN K L +  +  + AVDRV+ +S+ R ++VKL+L +DKL 
Sbjct: 240 ITSKLIDGSFPDYSRVIPQSNSKILVLKNSEFKSAVDRVATVSAERSRSVKLTLENDKLV 299

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           + V N + G+ +E +   Y++ PM+I FN +YLL++   I       DE+ F L+ S SS
Sbjct: 300 LQVSNAETGQGVEELEAQYSDEPMEIGFNARYLLDVTQQIEG-----DEIRFELNDSASS 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +                A YVLMP+R+
Sbjct: 355 ARVTD---------LADQGAQYVLMPLRV 374


>gi|330827702|ref|YP_004390654.1| DNA polymerase III subunit beta [Aeromonas veronii B565]
 gi|328802838|gb|AEB48037.1| DNA polymerase III, beta subunit [Aeromonas veronii B565]
          Length = 367

 Score =  371 bits (953), Expect = e-101,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  +L  L      +  + T+P+  +VLL  ++GLL +  +  E+E+ G +  +
Sbjct: 1   MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSNGLLSLTGTDLEVEMIGQVYLN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G  TV A  L DI R L +GA+I     N  G  + I  G S F L + P +E+P
Sbjct: 61  GASEDGRTTVPARKLLDICRGLPEGAEIRL---NTEGERLIIRSGRSRFNLSTLPATEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E V  F+++   LK L++ T F+MA++++RYYLNG+ F      L+   VATDGH
Sbjct: 118 NIEDWESVLEFDISQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    ++V +      +I+PRK V E++R+L ++D  V++ +  S +   ++    + 
Sbjct: 176 RLATCRREVVGESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+++ VIP ++DK L     +LRQA  R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       D++   L  S SS  I
Sbjct: 296 NNPEQEEAEELLDVQYAAGEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMRI
Sbjct: 351 EDFEH---------QDAQYVVMPMRI 367


>gi|319405029|emb|CBI78639.1| DNA polymerase III, beta chain [Bartonella sp. AR 15-3]
          Length = 373

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 159/387 (41%), Positives = 247/387 (63%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ RS +L+ LG   RI+ER+NTIP+  +VL+ A+DG +++KA+  ++EIT +   +
Sbjct: 1   MRVTISRSQLLKSLGRVHRIVERRNTIPILSNVLIDASDGRMQLKATDLDLEITESSSVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ITV AHLLYDIVRKL D +++    +    + ++I+ G +NF LQ  P+ +FP 
Sbjct: 61  IEQSGAITVPAHLLYDIVRKLLDDSEVILDVDESQASTMSITSGCTNFQLQCLPKVDFPE 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179
           +   ++   F L +S LK L++ T FAM+TEE RYYLNGI+FHI  +D+ KL  V+TDGH
Sbjct: 121 SLPGQFSCRFSLLASKLKYLIDCTQFAMSTEETRYYLNGIYFHIISDDISKLRLVSTDGH 180

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA  +++       MP +I+PRK VGE+ ++L  + D+ V + LS+++I  ++ S+ ++
Sbjct: 181 RLAQVDIEAPLGSDGMPGVIIPRKTVGELQKLLGEEADNDVCIELSDTKIRFSVGSVILT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP YQ VIP  NDK+L +N  +   AVDRVS +SS R +AVKL +    +   
Sbjct: 241 SKLIDGVFPEYQRVIPLKNDKKLIINRRDFSSAVDRVSTISSDRGRAVKLMIEKGLVRFV 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+NPD G A + +   Y   P++I FN +YLL+I   +SS     DE++F    S +   
Sbjct: 301 VNNPDSGSAKDQLVADYAFDPLEIGFNSRYLLDIAAQLSS-----DEMIFTFADSGAPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IRG         ++  ++ YVLMP+R+
Sbjct: 356 IRG---------NSDTDSLYVLMPIRV 373


>gi|294085124|ref|YP_003551884.1| DNA polymerase III subunit beta [Candidatus Puniceispirillum
           marinum IMCC1322]
 gi|292664699|gb|ADE39800.1| DNA polymerase III, beta subunit [Candidatus Puniceispirillum
           marinum IMCC1322]
          Length = 367

 Score =  371 bits (953), Expect = e-100,   Method: Composition-based stats.
 Identities = 149/385 (38%), Positives = 232/385 (60%), Gaps = 18/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R  +L  LGH   ++ER+NTIP+  +V+L+A DG L + A+  +++IT  +  +
Sbjct: 1   MKLAIDRMSLLRPLGHVQSVVERRNTIPILANVVLRAEDGQLSLTATDMDMDITTEVGCA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ T+SAH+LYDIVRKL DG+++     +       IS G S+F L + P  +FP+
Sbjct: 61  VATAGTTTMSAHMLYDIVRKLPDGSEVELSVGD---GHAMISAGRSSFRLPTLPVEDFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +F L ++  ++L++ T FA++TEE RYYLNGI+ H   +   LCAVATDGHR
Sbjct: 118 ISSNELPTNFVLTAADFRDLIDATKFAISTEETRYYLNGIYLH-KSDAGDLCAVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ +  +    A+MPSII+PRKAVGE+ ++L   D  V +S+SE+R      ++ ++ +
Sbjct: 177 LAMTKQTLPGGAAQMPSIILPRKAVGELRKLLDDYDGDVTISMSETRAEFAFGAVRLTTK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y  VIP +NDK ++V+      AVDRVS +SS + ++VK+ L +  + ++  
Sbjct: 237 LIDGTFPDYTRVIPTNNDKIMQVDVGAFSAAVDRVSTISSEKSKSVKIGLRAGVMTLSAS 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N D   A E + V Y+   M+I FN +YLL+I     + +V  + V F L    S   +R
Sbjct: 297 NTDASSATEELEVSYSGNEMEIGFNARYLLDI-----ASQVNSEMVEFALADQGSPTLVR 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D+         + +VLMPMR+
Sbjct: 352 TPGDDA---------SLFVLMPMRV 367


>gi|257485598|ref|ZP_05639639.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
           ATCC 11528]
 gi|289628213|ref|ZP_06461167.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
           str. NCPPB3681]
 gi|289649103|ref|ZP_06480446.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
           str. 2250]
 gi|330870076|gb|EGH04785.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aesculi
           str. 0893_23]
 gi|331011886|gb|EGH91942.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. tabaci
           ATCC 11528]
          Length = 367

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|226942172|ref|YP_002797245.1| DNA polymerase III subunit beta [Azotobacter vinelandii DJ]
 gi|226717099|gb|ACO76270.1| DNA polymerase III, beta chain 1, 2, and 3 protein [Azotobacter
           vinelandii DJ]
          Length = 367

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +P  
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEKQQLSLTGTDLEVELVGRVPLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L DI + L +   I    + +   ++ I  G S F L + P S+FP
Sbjct: 61  ENAEPGEITVPARKLMDICKSLPNDTLIDIRLDEQ---KLLIKAGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   +N   L+  AVATDGH
Sbjct: 118 TAEEGLGSLTFSLGQSKLRRLIERTSFAMAQQDVRYYLNGMLLEMNGGVLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLALCSMQSGIEHADRHQVIVPRKGILELARLLTDQDGEVSIVLGQYHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK++  +   LR+A  R +I+S+ + + ++L L+S  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKKVLGDRQLLREAFSRTAILSNEKYRGIRLQLASGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y+   ++I FN  YLL+++  +S+     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVAVDYSGDALEIGFNVSYLLDVLGVMSA-----EQVCLTLSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QEADND---------DSAYVVMPMRL 367


>gi|103486201|ref|YP_615762.1| DNA polymerase III subunit beta [Sphingopyxis alaskensis RB2256]
 gi|98976278|gb|ABF52429.1| DNA polymerase III, beta subunit [Sphingopyxis alaskensis RB2256]
          Length = 371

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 153/388 (39%), Positives = 234/388 (60%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ LGH   ++ER+NTIP+  +VL++A+  G L + A+  ++++   I A
Sbjct: 1   MKATIERAVLLKSLGHVQSVVERRNTIPILSNVLIEADGTGQLRLMATDLDLQVVETIAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+ TVSAH L++I RKL +G+++S         +V +  G SNF L + P  +FP
Sbjct: 61  KVETPGTTTVSAHTLFEIARKLPEGSEVSLAAAE---GKVQVKAGRSNFNLPTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATD 177
              E +   +FEL  + L  ++++T FA++TEE RYYLNGIF H+ E+     L A ATD
Sbjct: 118 VIAEGDLPTNFELPVAELIQIIDKTRFAISTEETRYYLNGIFLHVAEDATGPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA   V      A MP +IVPRK VGEI ++L   + +V++SLS S+I   + +  +
Sbjct: 178 GHRLARYTVTRPDGAAGMPDVIVPRKCVGEIRKLLDEAEGNVEISLSASKIRFQLGNAVL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP +NDK L+V+  +L Q VDRVS ++S + +AVK+ L  D++ +
Sbjct: 238 TSKLIDGTFPDYSRVIPTANDKLLKVDPKSLFQGVDRVSTIASEKTRAVKVGLDKDRITL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V +P+ G A E +   Y+   M+I FN +YL +I+  +       D V   L  +N+  
Sbjct: 298 SVTSPENGTAAEELAAAYDSDAMEIGFNARYLSDILGQVDG-----DSVELHLADANAPT 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            IR  +K           A YVLMPMR+
Sbjct: 353 LIRESEKSP---------ALYVLMPMRV 371


>gi|330806659|ref|YP_004351121.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
 gi|327374767|gb|AEA66117.1| DNA polymerase III subunit beta [Pseudomonas brassicacearum subsp.
           brassicacearum NFM421]
          Length = 367

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPADPGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   ++  AVATDGH
Sbjct: 118 TVEEGPGSLTCSLDQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGVIR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       + + 
Sbjct: 176 RLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|66043273|ref|YP_233114.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           B728a]
 gi|302185841|ref|ZP_07262514.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           642]
 gi|63253980|gb|AAY35076.1| DNA polymerase III, beta chain [Pseudomonas syringae pv. syringae
           B728a]
 gi|330976403|gb|EGH76460.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aptata
           str. DSM 50252]
          Length = 367

 Score =  371 bits (952), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|56551876|ref|YP_162715.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241761806|ref|ZP_04759892.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
 gi|56543450|gb|AAV89604.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           ZM4]
 gi|241373720|gb|EER63280.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           ATCC 10988]
          Length = 369

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 147/386 (38%), Positives = 235/386 (60%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A ++G +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G  TVSAH+L++IVRKL DG+QI     +    ++ I  G S F L + P  +FP
Sbjct: 61  EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E E    F L +  LK ++++T FA++ +E RYYLNGIF H+ +++  + A ATDGH
Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   +   A    MP +I+PRK V E+ ++L   +  +K+SLS S+I  ++    ++ 
Sbjct: 178 RLACVTIPAPAGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP +NDK L+V   +L Q VDRV+ ++S + +AVK+S+ + K+ ++V
Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G A E +   Y+  P+DI FN +YLL+I+  I S     D+    L  + +   I
Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  D+ +         A YVLMPMR+
Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369


>gi|70733515|ref|YP_257154.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf-5]
 gi|68347814|gb|AAY95420.1| DNA polymerase III, beta subunit [Pseudomonas fluorescens Pf-5]
          Length = 367

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     + +L  S L+ L+ERT FAMA +++RYYLNG+   ++   ++  AVATDGH
Sbjct: 118 TVEEGPGSLTCQLEQSRLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGIIR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       + + 
Sbjct: 176 RLAMCSMQADIGQPDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|145297126|ref|YP_001139967.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
 gi|142849898|gb|ABO88219.1| DNA polymerase III beta-subunit [Aeromonas salmonicida subsp.
           salmonicida A449]
          Length = 367

 Score =  370 bits (951), Expect = e-100,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 212/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + R  +L  L      +  + T+P+  +VLL  + GLL +  +  E+E+ G +  +
Sbjct: 1   MQLEISREALLRPLQLVSGALGGRPTLPILGNVLLDVSQGLLSLTGTDLEVEMIGQVYLN 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI R L +GA I     N  G  + I  G S F L + P SE+P
Sbjct: 61  NESQDGRTTVPARKLLDICRGLPEGADIRL---NTEGERLIIRSGRSRFNLSTLPASEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E V  F++    LK L++ T F+MA++++RYYLNG+ F      L+   VATDGH
Sbjct: 118 NIEDWESVLEFDIGQLELKKLIDATQFSMASQDVRYYLNGMLFESEGHGLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    ++V +      +I+PRK V E++R+L ++D  V++ +  S +   ++    + 
Sbjct: 176 RLATCRREVVEESLPDHQVILPRKGVLELVRLLEAEDKPVRLQIGRSNLRAALDGFIFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+++ VIP ++DK L     +LRQA  R +I+S+ + + V+L+L  + L +T 
Sbjct: 236 KLVDGRFPDWRRVIPRNSDKALIAGREDLRQAFARAAILSNEKFRGVRLNLQENLLRITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       D++   L  S SS  I
Sbjct: 296 NNPEQEEAEELLDVQYEASEMEIGFNVSYVLDVLNTLKC-----DQIRISLSDSISSAII 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           +A YV+MPMRI
Sbjct: 351 EDFDH---------QDAQYVVMPMRI 367


>gi|71736736|ref|YP_272317.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|71557289|gb|AAZ36500.1| DNA polymerase III, beta subunit [Pseudomonas syringae pv.
           phaseolicola 1448A]
 gi|320321689|gb|EFW77788.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. B076]
 gi|320331109|gb|EFW87080.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330881907|gb|EGH16056.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. race 4]
 gi|330952331|gb|EGH52591.1| DNA polymerase III subunit beta [Pseudomonas syringae Cit 7]
 gi|330961506|gb|EGH61766.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           maculicola str. ES4326]
 gi|330987020|gb|EGH85123.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           lachrymans str. M301315]
          Length = 367

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 215/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|330876356|gb|EGH10505.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           morsprunorum str. M302280PT]
 gi|330964180|gb|EGH64440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv.
           actinidiae str. M302091]
          Length = 367

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLANGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEIGVEYNGESLEIGFNVSYLLDVLSVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|148251628|ref|YP_001236213.1| DNA polymerase III subunit beta [Bradyrhizobium sp. BTAi1]
 gi|146403801|gb|ABQ32307.1| DNA polymerase III, beta subunit [Bradyrhizobium sp. BTAi1]
          Length = 372

 Score =  370 bits (950), Expect = e-100,   Method: Composition-based stats.
 Identities = 165/387 (42%), Positives = 239/387 (61%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TVER+ +L+ LGH  R++ER+NTIP+  +VL++A +  L ++A+  ++E+T  + A 
Sbjct: 1   MKVTVERAQLLKSLGHVHRVVERRNTIPILGNVLVRAENARLSLRATDLDLEVTETLAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV AH+ YDIVRKL DG+QI    + E    + I  G S F LQ+ PES+FP 
Sbjct: 61  TATAGATTVPAHMFYDIVRKLPDGSQIVLESDGERAV-LAIRAGRSKFTLQTLPESDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
               +  ++F + +  +K+L++RT FA++TEE RYYLNGI+ H     +   L AVATDG
Sbjct: 120 LAAGDMTHAFGVPAKDIKSLIDRTQFAISTEETRYYLNGIYLHAGGTAKQPSLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  ++   A  A+MP +IVPRK VGE+ R++   DS +++ LS+ +I   +  + ++
Sbjct: 180 HRLAQVDLPQPAGAAEMPGVIVPRKTVGEVQRLIEDNDSEIRIELSQGKIRFTLGQVVLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP +NDKEL V+  +   AVDRVS +SS R +AVKL+LS  +L ++
Sbjct: 240 SKLIDGTFPDYGRVIPQNNDKELIVDKADFAAAVDRVSTISSERGRAVKLALSPGRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPD G A E + V Y    +DI FN +YLL+I   I  +       V RL    S   
Sbjct: 300 VTNPDSGSATEELEVEYAADALDIGFNSRYLLDIAAQIEGEV-----AVLRLADPGSPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D           NA YVLMPMR+
Sbjct: 355 IQDRDN---------RNALYVLMPMRV 372


>gi|126172259|ref|YP_001048408.1| DNA polymerase III subunit beta [Shewanella baltica OS155]
 gi|152998557|ref|YP_001364238.1| DNA polymerase III subunit beta [Shewanella baltica OS185]
 gi|160873128|ref|YP_001552444.1| DNA polymerase III subunit beta [Shewanella baltica OS195]
 gi|217971218|ref|YP_002355969.1| DNA polymerase III subunit beta [Shewanella baltica OS223]
 gi|304412706|ref|ZP_07394309.1| DNA polymerase III, beta subunit [Shewanella baltica OS183]
 gi|307305829|ref|ZP_07585575.1| DNA polymerase III, beta subunit [Shewanella baltica BA175]
 gi|125995464|gb|ABN59539.1| DNA polymerase III, beta subunit [Shewanella baltica OS155]
 gi|151363175|gb|ABS06175.1| DNA polymerase III, beta subunit [Shewanella baltica OS185]
 gi|160858650|gb|ABX47184.1| DNA polymerase III, beta subunit [Shewanella baltica OS195]
 gi|217496353|gb|ACK44546.1| DNA polymerase III, beta subunit [Shewanella baltica OS223]
 gi|304348916|gb|EFM13331.1| DNA polymerase III, beta subunit [Shewanella baltica OS183]
 gi|306911322|gb|EFN41748.1| DNA polymerase III, beta subunit [Shewanella baltica BA175]
 gi|315265353|gb|ADT92206.1| DNA polymerase III, beta subunit [Shewanella baltica OS678]
          Length = 366

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQVVVH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK++++ T F+MA +++RYYLNG+ F      L+  A+ATDGH
Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L S D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRTIEAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVEYNNQALEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|330970326|gb|EGH70392.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. aceris
           str. M302273PT]
          Length = 367

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPSNDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|237801663|ref|ZP_04590124.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae
           str. 1_6]
 gi|331024522|gb|EGI04578.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. oryzae
           str. 1_6]
          Length = 367

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVMGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYSGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|330890248|gb|EGH22909.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. mori str.
           301020]
          Length = 367

 Score =  369 bits (949), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 214/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L   A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSSDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFNLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    + A    +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|197286951|ref|YP_002152823.1| DNA polymerase III subunit beta [Proteus mirabilis HI4320]
 gi|227354808|ref|ZP_03839225.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906]
 gi|118801|sp|P22838|DPO3B_PROMI RecName: Full=DNA polymerase III subunit beta
 gi|150879|gb|AAA83959.1| DNA polymerase III beta subunit [Proteus mirabilis]
 gi|194684438|emb|CAR46154.1| DNA polymerase III beta subunit [Proteus mirabilis HI4320]
 gi|227165126|gb|EEI49957.1| DNA polymerase III beta subunit [Proteus mirabilis ATCC 29906]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LL+  +  L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREQLLKPLQQVSGPLGGRPTLPILGNLLLKVTENTLSLTGTDLEMEMMARVSLS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+IS   +   G  + +  G S F L + P S+FP
Sbjct: 61  QSHEIGATTVPARKFFDIWRGLPEGAEISVELD---GDRLLVRSGRSRFSLSTLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+ +L  VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFET--ENTELRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV  +DI   +    S+IVPRK V E++R+L  S +S +++ +  + +  ++     +
Sbjct: 176 RLAVCAMDIGQSLPG-HSVIVPRKGVIELMRLLDGSGESLLQLQIGSNNLRAHVGDFIFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P +  K +   C  L+QA  R +I+S+ + + V+++L++ +L +T
Sbjct: 235 SKLVDGRFPDYRRVLPKNPTKTVIAGCDILKQAFSRAAILSNEKFRGVRINLTNGQLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  YLL++++ +       +EV   L  + SSV 
Sbjct: 295 ANNPEQEEAEEIVDVQYQGEEMEIGFNVSYLLDVLNTLKC-----EEVKLLLTDAVSSVQ 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +      +              MPMR+
Sbjct: 350 VENVASAAAAYVV---------MPMRL 367


>gi|146280399|ref|YP_001170552.1| DNA polymerase III subunit beta [Pseudomonas stutzeri A1501]
 gi|145568604|gb|ABP77710.1| DNA polymerase III, beta subunit [Pseudomonas stutzeri A1501]
 gi|327478614|gb|AEA81924.1| DNA polymerase III subunit beta [Pseudomonas stutzeri DSM 4166]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  +++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFSIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVALE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L   A IS   +++   +V I  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPSDALISIRLDDQ---KVVIKSGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     SF +A   L+ L+ER+ FAMA +++RYYLNG+   ++     L AVATDGH
Sbjct: 118 TVEEGPGSLSFTVAQGKLRKLIERSAFAMAQQDVRYYLNGMLIEVS--SGMLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    +      +IVPRK + E+ R+L+ +D+ V + L +  I       + + 
Sbjct: 176 RLAMCSMQAGIEQPDRHQVIVPRKGILELARLLNDQDAEVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L S  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVVGDRQLLREAFSRTAILSNEKYRGIRLQLESGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  +NSS  +
Sbjct: 296 NNPEQEEAEEEVAVDYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDANSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QEFDND---------DSAYVVMPMRL 367


>gi|170719189|ref|YP_001746877.1| DNA polymerase III subunit beta [Pseudomonas putida W619]
 gi|169757192|gb|ACA70508.1| DNA polymerase III, beta subunit [Pseudomonas putida W619]
          Length = 367

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 211/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVQGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +   I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLPNDVLIDIKVDEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AV+TDGH
Sbjct: 118 TVEEGPGSLTCNLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSRNTLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +    +  +   +IVPRK + E+ R+L+  +  V + L +  I  N    + + 
Sbjct: 176 RLALCSMSAAIEQDERHQVIVPRKGILELARLLTDPEGMVSIVLGQHHIRANTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L++ +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVIGDRQALREAFSRTAILSNEKYRGIRLQLAAGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEISVDYDGASLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    D         ++ YV+MPMR+
Sbjct: 351 QEAGND---------DSSYVVMPMRL 367


>gi|239993751|ref|ZP_04714275.1| DNA polymerase III, beta subunit [Alteromonas macleodii ATCC 27126]
 gi|332139412|ref|YP_004425150.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep
           ecotype']
 gi|327549434|gb|AEA96152.1| DNA polymerase III subunit beta [Alteromonas macleodii str. 'Deep
           ecotype']
          Length = 366

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R   L+ L      +ER++T+P+  +VL++ ++  L +  +  E+E+  ++   
Sbjct: 1   MKFTISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L+DI+R + +G  I F  +   G++  I  G   + L +   +++P
Sbjct: 61  GEFTEGEITVPAKKLFDIIRGISEGTDIHFSLD---GSKALIRAGRGRYTLSTLSANDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E    FEL+ S LK L++ T F+MA +++RYYLNG+     E  ++   VATDGH
Sbjct: 118 NLEDWEGEVEFELSCSDLKRLIDATSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  ++    +     +I+PRK V EI R++S  D S+KV +  + + +       + 
Sbjct: 176 RLALCRLNYETALPSR-QVIIPRKGVLEISRLISEDDKSLKVQIGANHLRIFSNDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DKE+  +   L++A  R +I+S+ + + V+L+LSS +L +T 
Sbjct: 235 KLVDGRFPDYRRVLPQNGDKEIIASKAVLKEAFSRAAILSNEKFRGVRLNLSSGELKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  YL+++++ + SD      V   L  SN+S  I
Sbjct: 295 NNPEQEEAEEIVDVQYQGDDLEIGFNVAYLIDVLNALGSDG-----VKVSLSDSNASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D+         A YV+MPMR+
Sbjct: 350 EDDADDA---------ALYVIMPMRL 366


>gi|260752565|ref|YP_003225458.1| DNA polymerase III subunit beta [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
 gi|258551928|gb|ACV74874.1| DNA polymerase III, beta subunit [Zymomonas mobilis subsp. mobilis
           NCIMB 11163]
          Length = 369

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/386 (37%), Positives = 234/386 (60%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L+ L H   ++ER+NTIP+  +VL++A ++G +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLKSLSHVQSVVERRNTIPILSNVLIEAASNGCVKLMATDLDLQVVETLSA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G  TVSAH+L++IVRKL DG+QI     +    ++ I  G S F L + P  +FP
Sbjct: 61  EVDTPGETTVSAHMLFEIVRKLPDGSQIQLSAAD---GKMLIVAGRSRFSLATLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E E    F L +  LK ++++T FA++ +E RYYLNGIF H+ +++  + A ATDGH
Sbjct: 118 VISESELPTHFALPTESLKQIIDKTRFAISVDETRYYLNGIFLHVLKDENVMKAAATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   +        MP +I+PRK V E+ ++L   +  +K+SLS S+I  ++    ++ 
Sbjct: 178 RLACVTIPAPVGAEDMPDVIIPRKCVVELRKLLDECEDEIKISLSASKICFDLGHAILTS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y  VIP +NDK L+V   +L Q VDRV+ ++S + +AVK+S+ + K+ ++V
Sbjct: 238 KLIDGTFPDYSRVIPTANDKLLKVKPKDLMQGVDRVATIASEKTRAVKMSIEAGKISLSV 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G A E +   Y+  P+DI FN +YLL+I+  I S     D+    L  + +   I
Sbjct: 298 TSPENGMATEEVLGEYDADPLDIGFNARYLLDILGQIES-----DQAEIHLAEAAAPTLI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  D+ +         A YVLMPMR+
Sbjct: 353 RDSDQSA---------ALYVLMPMRV 369


>gi|114769643|ref|ZP_01447253.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255]
 gi|114549348|gb|EAU52230.1| DNA polymerase III subunit beta [alpha proteobacterium HTCC2255]
          Length = 372

 Score =  369 bits (948), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ERS +L+ +  A  ++ER+NTIP+  +VL++A  G +  +A+  +IE+   +   
Sbjct: 1   MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AH L++IVRKL DGA +    ++     +++  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVGAHTLHEIVRKLPDGAMVE-LTDDATANRLDVVAGRSSFSLATLPREDFPI 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   S  L+ L +++ FA++TEE RYYLNG++ H +  E    L  VATDG
Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      +P +IVPRK VGE+ ++L   +  + VS+SE++I  +   + ++
Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     QAVDRVS +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVAYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  + +S         A YV+MPMR+
Sbjct: 355 MREGNDES---------AVYVVMPMRV 372


>gi|77917620|ref|YP_355435.1| DNA polymerase III subunit beta [Pelobacter carbinolicus DSM 2380]
 gi|77543703|gb|ABA87265.1| DNA polymerase III, beta subunit [Pelobacter carbinolicus DSM 2380]
          Length = 372

 Score =  369 bits (947), Expect = e-100,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 203/389 (52%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  ++E+   L+ L     I+E+KNTIP+  +VL++A D  + + A+  E+ +  + PAS
Sbjct: 1   MNFSIEKEVFLKGLARVQGIVEKKNTIPILANVLIEAEDDHIRLTATDLEVGMKASYPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  L++I+++L +       KEN     + I  G S F +      EFP 
Sbjct: 61  VTSAGRITVSAKKLFEIIKELPEKEISFTAKEN---CWIEIRCGKSLFNVVGLSADEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             + +    F++   +LK L+E+T F+M+T+E +Y LNGI+    E++ +  L  VATDG
Sbjct: 118 FPQIDKEQFFQIPGDILKRLIEKTAFSMSTDESKYNLNGIYLRAMEDEGRQILRFVATDG 177

Query: 179 HRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRLA+ +  +     +     +I PRK V E+ +I    +  V +   ++   +      
Sbjct: 178 HRLALMQTPLDCSHVEPLAKGVIFPRKGVLELRKIAEEGNGEVLLGFMDNNAVIKKSQTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RL+DG+FP+Y  VIP +ND +  +       A+ R++I+SS + + VK+    ++L 
Sbjct: 238 IVMRLVDGDFPDYNRVIPLNNDLKANIPREEFLHALRRMAILSSEKSKGVKIDFQENQLT 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP+ G A E   + Y E  + I FN +YL++I+ N+ S     ++V   L    S 
Sbjct: 298 LSSSNPEFGDAREDFEIEYAEGDLSIGFNARYLIDILANLDS-----EKVCLSLRDQLSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I   D +         +   V+MPMR+
Sbjct: 353 GLITPLDDN---------DYLAVIMPMRL 372


>gi|49086146|gb|AAT51331.1| PA0002 [synthetic construct]
          Length = 368

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 125/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER  T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERLQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVVLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L +   I    E +   ++ +  G S F L + P ++FP
Sbjct: 61  DAAEPGEITVPARKLMDICKSLPNDVLIDIRVEEQ---KLLVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F +A S L+ L++RT FAMA +++RYYLNG+   +      L +VATDGH
Sbjct: 118 TVEEGPGSLNFSIAQSKLRRLIDRTSFAMAQQDVRYYLNGMLLEV--NGGTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +D          +IVPRK + E+ R+L+ +D  V + L +  I       + + 
Sbjct: 176 RLAMCSLDAQIPSQDRHQVIVPRKGILELARLLTEQDGEVGIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L LS+  L +  
Sbjct: 236 KLVDGKFPDYERVLPRGGDKLVVGDRQQLREAFSRTAILSNEKYRGIRLQLSNGLLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  I +     ++V F L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVQVEYNGGNLEIGFNVSYLLDVLGVIGT-----EQVRFILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D D         ++ YV+MPMR+
Sbjct: 351 HEADND---------DSAYVVMPMRL 367


>gi|297184289|gb|ADI20406.1| DNA polymerase sliding clamp subunit (pcna homolog) [uncultured
           alpha proteobacterium EB080_L43F08]
          Length = 372

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 229/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ERS +L+ +  A  ++ER+NTIP+  +VL++A  G +  +A+  +IE+   +   
Sbjct: 1   MKVSIERSALLKAMSQAQSVVERRNTIPILANVLIEAEGGEISFRATDLDIEVVYKVVGM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV AH L++IVRKL DGA +    ++     +++  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVGAHTLHEIVRKLPDGAMVE-LTDDATANRLDVVAGRSSFSLATLPREDFPI 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
               EY  +F   S  L+ L +++ FA++TEE RYYLNG++ H +  E    L  VATDG
Sbjct: 120 MANSEYACNFSAQSETLRRLFDKSKFAISTEETRYYLNGVYMHSSDGENGRVLRCVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +      +P +IVPRK VGE+ ++L   +  + VS+SE++I  +   + ++
Sbjct: 180 HRLARIDTQLPEGADTLPGVIVPRKTVGELRKLLDDDEMKIAVSVSETKIRFSTPEIILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + L V+     QAVDRVS +SS R +AVKL+L  D+L ++
Sbjct: 240 SKVIDGSFPDYTRVIPQGNTRRLEVDAAEFAQAVDRVSTVSSERSRAVKLTLEDDRLVLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS     
Sbjct: 300 VNAPDSGAAEEELVVGYADERLEIGFNAKYLLEI-----AGQVDRENAVFMFNSSGDPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  + +S         A YV+MPMR+
Sbjct: 355 MREGNDES---------AVYVVMPMRV 372


>gi|254428026|ref|ZP_05041733.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881]
 gi|196194195|gb|EDX89154.1| DNA polymerase III, beta subunit [Alcanivorax sp. DG881]
          Length = 366

 Score =  368 bits (946), Expect = e-100,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +L+ L     ++E++ T+PV  +VLL+  DG L +  +  E+E+   +P  
Sbjct: 1   MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI + L   A I F  +   G  + +  G S F L + P SEFP
Sbjct: 61  GEQEPGETTVPARKLVDIAKSLPAEADIRFEVD---GERMLVRSGRSRFTLSTLPASEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E+      E+   VL+ L++RT F+MA +++RYYLNG+ F +     +L AVATDGH
Sbjct: 118 NLEEDAAGSRLEMKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELKPG--RLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + ++ A + +  S+I+PRK V E+ RIL     + ++++  + + + + +++ + 
Sbjct: 176 RLALCDAELDAPVEE-ASVILPRKGVMELSRILGDSGEAARLTIGRNHVRIVVGAITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y  VIP    +++  +   LRQA+ RV+I+S+ + + V++ LS   L +  
Sbjct: 235 KLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRIVA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +N  P++I FN  YLL++++ +        +    +  SNSS  +
Sbjct: 295 NNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGGT-----QAELEMGDSNSSALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  +         A YV+MPMR+
Sbjct: 350 FDPESKA---------AVYVVMPMRL 366


>gi|83642916|ref|YP_431351.1| DNA polymerase III subunit beta [Hahella chejuensis KCTC 2396]
 gi|83630959|gb|ABC26926.1| DNA polymerase III, beta subunit [Hahella chejuensis KCTC 2396]
          Length = 367

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 212/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+T+ R  ++  L     ++E++ T+PV  +VLL A DG L I  +  E+E+   I   
Sbjct: 1   MKLTITREALVTSLQMISGVVEKRQTMPVLANVLLDARDGKLVITGTNMEVELVAEISDV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++    ITV A    DI R L +GA I    ++     +N+ +G S+F L + P   FP
Sbjct: 61  NIEHESRITVPAKKFTDICRALPEGAAIGIELKD---GRLNVRYGSSHFILSTLPAEHFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +EE       L    LK L++ T FAMA +++RYYLNG+   ++E+ L+   VATDGH
Sbjct: 118 NVEEEPESVKVTLPQRELKRLIDATAFAMAQQDVRYYLNGMLMELDEQGLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A V +   +++    IVPRK + E+ R+L+  D S  +   ++ +  ++   + + 
Sbjct: 176 RLALANVSLQTGVSEKRQPIVPRKGILELGRLLNDTDESCTLVFGDNHVRASVGHFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG+FP+YQ VIP S DK +  +   L+  + R SI+S   I+ V+L      L +  
Sbjct: 236 KLIDGKFPDYQRVIPRSGDKVMLADRVLLKGVLSRASILSHESIRGVRLQFEEGLLKVFA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD  +A +S+ V Y    + I FN  YL+++++ +      D++V   L ++NSS  +
Sbjct: 296 NNPDQEEAEDSLEVEYPHEALQIGFNVGYLIDVLNALD-----DEQVKVTLSNANSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G D           +A YV+MPMR+
Sbjct: 351 EGVD---------TRDAVYVVMPMRL 367


>gi|304414286|ref|ZP_07395654.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola
           LSR1]
 gi|304283500|gb|EFL91896.1| DNA polymerase III beta subunit [Candidatus Regiella insecticola
           LSR1]
          Length = 375

 Score =  368 bits (945), Expect = e-100,   Method: Composition-based stats.
 Identities = 130/394 (32%), Positives = 211/394 (53%), Gaps = 28/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++R  +L+ L      +  +  +P+  ++LLQ +D  L +  +  EIE+   I  S
Sbjct: 1   MKFTIKREHLLKPLQQVSGPLSARTALPILANLLLQVSDNTLTLTGTDLEIEMVATIALS 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                  GS TV A   +DI R L + A+I+   E +    ++I  G S F L      +
Sbjct: 61  QSHKTETGSTTVPARKFFDICRGLPEDAEITVTLETK---RLSIRSGHSRFSLSILSARD 117

Query: 118 FPSTKEE--EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           FP+  +   E      ++ + LK L++ T FAMA +++RYYLNG+ F +  E  KLCA+ 
Sbjct: 118 FPNLADLKKEKEVELTVSPAALKCLIDSTQFAMAHQDVRYYLNGMLFEVEGE--KLCAIT 175

Query: 176 TDGHRLAVAEVDI----VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           TDGHRLAV    I     AQ  K  S+IVPRKAV E+ R+LS  +  + + +  + I ++
Sbjct: 176 TDGHRLAVCSTSIIQKDTAQELKKYSVIVPRKAVIELARLLSGGEDRLCLQIGSNNIRVH 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +     + +L+DG FP+Y+ V P +  K +  NC  L+QA  R +I+S+ + + V+L +S
Sbjct: 236 LNGFIFTSKLVDGRFPDYKRVFPKNPSKIVIANCEQLKQAFSRAAILSNAKFRGVRLHIS 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + KL +T +NP+  +A E+++V Y    ++I FN  YLL++++ +  D+     V   L 
Sbjct: 296 AGKLKITANNPEQEEAEETLDVDYQGEDIEISFNVGYLLDVLNALKCDK-----VKLLLI 350

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S SSV I   +              Y++MPMR+
Sbjct: 351 DSVSSVQIENIENQI---------TTYIVMPMRL 375


>gi|260431697|ref|ZP_05785668.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis
           ITI-1157]
 gi|260415525|gb|EEX08784.1| DNA polymerase III, beta subunit [Silicibacter lacuscaerulensis
           ITI-1157]
          Length = 373

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 148/388 (38%), Positives = 236/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQVLFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F  ++++L+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGPEGGKVLRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+ A    MP +IVPRK VGE+ ++L   D  + VS+SE+++      +++
Sbjct: 180 GHRLARIDADLPAGAEDMPGVIVPRKTVGELRKLLEDDDMDIAVSVSETKVRFATPDITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP +N ++L V+     QAVDRV+ +SS R +AVKL L +DKL +
Sbjct: 240 TSKVIDGTFPDYTRVIPQNNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLENDKLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYL EI     + +V  +  VF  +S+    
Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLQEI-----ASQVDRENAVFLFNSAGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373


>gi|89052493|ref|YP_507944.1| DNA polymerase III subunit beta [Jannaschia sp. CCS1]
 gi|88862042|gb|ABD52919.1| DNA polymerase III, beta subunit [Jannaschia sp. CCS1]
          Length = 372

 Score =  368 bits (944), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 146/387 (37%), Positives = 231/387 (59%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ER+ +L  +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKLSIERATLLRAVSQAQSVVERRNTIPILANVLIEAEGETVSFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++IVRKL DG+ +S   E+   + + I  G S+F L + P  +FP 
Sbjct: 61  VERAGATTVSAVTLHEIVRKLPDGSLVS-LTEDTTTSRLTIEAGRSSFQLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               +Y  +F   +  L+ L +++ FA++TEE RYYLNG++FHI E D    L AVATDG
Sbjct: 120 MASTDYAANFSAKAPELRRLFDKSKFAISTEETRYYLNGVYFHIAEGDNGKALRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  +  +     +MP +IVPRK VGE+ ++L   D+ + VS+SE++I      ++++
Sbjct: 180 HRLARIDSALPDGAQEMPGVIVPRKTVGELRKLLDDDDAQIAVSVSETKIRFATPDITLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N + + V+  +  +AVD V+ +SS R +AVK++L  D+L ++
Sbjct: 240 SKVIDGTFPDYTRVIPAGNTRRMEVDAGDFAKAVDLVATVSSERSRAVKMALDEDRLMLS 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V+ PD G A   + V Y +  ++I FN KYLLEI     + +V  +  VF   S      
Sbjct: 300 VNAPDSGNAEAELVVAYADEKLEIGFNAKYLLEI-----ASQVDRENAVFMFSSPAEPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  + DS         A YV+MPMR+
Sbjct: 355 MREGNDDS---------AIYVVMPMRV 372


>gi|302381118|ref|YP_003816941.1| DNA polymerase III subunit beta [Brevundimonas subvibrioides ATCC
           15264]
 gi|302191746|gb|ADK99317.1| DNA polymerase III, beta subunit [Brevundimonas subvibrioides ATCC
           15264]
          Length = 372

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 212/387 (54%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS +L+ LGH   ++ER+NTIP+  +VLL A    L   A+  ++EI     A+
Sbjct: 1   MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEIVDEADAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G IT  AH LY+IVRKL DGA+++    N     + +  G S F L   P  +FP 
Sbjct: 61  VQVEGQITAPAHTLYEIVRKLPDGAEVALTY-NGDDPRLTVQAGRSKFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              ++    F L    L  L+++T FA++TEE RYYLNG++ H   E     L AVATDG
Sbjct: 120 MSTDQSGARFTLMKDDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEGGIPLLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE       A  P +IVPRK + ++ R+L      V++S+S  +I       S++
Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTIDQVRRLLDDGTGPVEISVSPQKIRFEFGQASLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  NDK+  ++      AVDRV+ +S+ + ++VKL+   D++ +T
Sbjct: 240 SKVIDGAFPDYMRVIPKGNDKQADIDNAVFASAVDRVATISAEKSRSVKLAFELDRVTLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+ +E + + Y+E P +I FN +YLL++   I+      +   F      S   
Sbjct: 300 VRNMEAGQGVEEVEIGYSEAPFEIGFNARYLLDVAGQITG-----ENATFLFADPASPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +                  YVLMP+R+
Sbjct: 355 VLDPGDPGVQ---------YVLMPLRV 372


>gi|329847539|ref|ZP_08262567.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19]
 gi|328842602|gb|EGF92171.1| DNA polymerase III, beta subunit [Asticcacaulis biprosthecum C19]
          Length = 373

 Score =  367 bits (943), Expect = 1e-99,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 220/387 (56%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ER  +L+ LGH   ++ER+NTIP+  +VLL A  G +   A+  ++EI     A+
Sbjct: 1   MQFTIERGALLKALGHVQNVVERRNTIPILSNVLLSAERGQVSFSATDLDMEIVDTAEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G IT  AH LY+IVRKL DGA +           + +S G S F L   P  +FP 
Sbjct: 61  VSVPGQITAPAHTLYEIVRKLPDGADVELKFSAGDDPRLAVSAGRSRFALPVLPAGDFPI 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
              +    SF +    LK L+++T FA++TEE RYYLNG++ H    +    L AVATDG
Sbjct: 121 MSSDHEGVSFSILRDDLKRLIDKTRFAVSTEETRYYLNGMYLHTLSEDGSNYLRAVATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE+      A  P +I+PRK + +  R+L      V++++S ++I   + + S++
Sbjct: 181 HRLALAEMPAPEGSAGGPGVIIPRKTIDQARRLLDDGTGYVELTISPAKIRFQLGNASLT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +NDK + ++   L +AVDRVS +S+ + ++VK+++   +L ++
Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKVMMIDTGILAKAVDRVSTISAEKSRSVKMAIEPGRLTLS 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E   + Y+   +DI FN +Y+L+++  I       ++V  R   ++S   
Sbjct: 301 VRNIEAGQAVEEAEIDYDNDSIDIGFNARYILDVMGQIGG-----EQVELRFADASSPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +     +            YVLMP+R+
Sbjct: 356 VLDPADNGVQ---------YVLMPLRV 373


>gi|329891033|ref|ZP_08269376.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC
           11568]
 gi|328846334|gb|EGF95898.1| DNA polymerase III, beta subunit [Brevundimonas diminuta ATCC
           11568]
          Length = 372

 Score =  367 bits (943), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 215/387 (55%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS +L  LGH   ++ER+NTIP+  +VLL A    L   A+  ++E+     A 
Sbjct: 1   MQLTIERSALLRALGHVQSVVERRNTIPILSNVLLSAGRDRLSFAATDLDMEMVDEAEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+V G IT  AH LY+IVRKL DGA++S     +    + ++ G S F L   P  +FP 
Sbjct: 61  VNVEGQITAPAHTLYEIVRKLPDGAEVSLTYSGDD-PRLVVAAGRSRFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              E     + L    L  L+++T FA++TEE RYYLNG++ H   +     L AVATDG
Sbjct: 120 MSTEASGARYTLPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVADGGIPLLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE       A  P +IVPRK V ++ R+L      V+V +S  +I       S++
Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDGAGPVEVQVSAQKIRFEFGEASLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  NDK+  ++ +   +AVDRV+ +S+ + ++VKL+  +D++ +T
Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNSLFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A E + + Y++ P +I FN +YLL++   I+      +   F+     S   
Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ETAHFKFADPASPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +              V   YVLMP+R+
Sbjct: 355 VLDP---------ADVGVQYVLMPLRV 372


>gi|52424541|ref|YP_087678.1| DNA polymerase III subunit beta [Mannheimia succiniciproducens
           MBEL55E]
 gi|52306593|gb|AAU37093.1| DnaN protein [Mannheimia succiniciproducens MBEL55E]
          Length = 370

 Score =  367 bits (942), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 118/385 (30%), Positives = 202/385 (52%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++      
Sbjct: 6   MQFIVSRDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTITGTDLEVELSTQAKLI 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A    DI R L D A+I    E E      +    + F L + P  E+P+
Sbjct: 66  SGTEGKFTIPAKKFLDICRSLPDEAEIHVTFEEE---RAIVRSARTKFNLATLPAEEYPN 122

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F    + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGHR
Sbjct: 123 LADWQSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGHR 180

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV  + +  Q  +  S+IVPRK V E+ R+L + D+  ++ +  + + + + ++  + +
Sbjct: 181 LAVCTIALE-QDLQNHSVIVPRKGVLELARLLEATDAPARLQIGTNNLRVQLANVVFTSK 239

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ V+P + D  L  +   L+QA  R +I+S+ R ++V+L L  +++ +T  
Sbjct: 240 LIDGRFPDYRRVLPRNADHILEADWDVLKQAFVRAAILSTERFRSVRLQLDQNQMKITAT 299

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E ++V Y+   M++ FN  Y+L++++ +         V  RL  ++SS  I 
Sbjct: 300 NPEQEEAEEIIDVSYSGNEMEVGFNVSYILDVLNALKCQ-----RVRMRLTDASSSCLIE 354

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +           +A YV+MPMR+
Sbjct: 355 NCED---------ASAEYVIMPMRL 370



 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 63/183 (34%), Gaps = 14/183 (7%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E    F ++   L   +++    +++      LN +   I ++ L +    TD       
Sbjct: 3   ERAMQFIVSRDNLLKPLQQVCGVLSSRPNIPVLNNVLLQIADDCLTI--TGTDLEVELST 60

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM-SVRLID 243
           +  +++      +  +P K   +I R L   ++ + V+  E R  +           L  
Sbjct: 61  QAKLISGTEGKFT--IPAKKFLDICRSLPD-EAEIHVTFEEERAIVRSARTKFNLATLPA 117

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-MSSVRI----QAVKLSLSSDKLCMT 298
            E+PN  +     ++ +       LR+ ++     M++         +K     + L   
Sbjct: 118 EEYPNLADW---QSEVDFTTEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLRTV 174

Query: 299 VDN 301
             +
Sbjct: 175 ATD 177


>gi|315634816|ref|ZP_07890098.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter
           segnis ATCC 33393]
 gi|315476368|gb|EFU67118.1| DNA-directed DNA polymerase III beta subunit [Aggregatibacter
           segnis ATCC 33393]
          Length = 366

 Score =  366 bits (941), Expect = 2e-99,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 1   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLSITGTDLEVELSTQTPLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    DI R L D A+I+   E +      +    S F L + P  ++P
Sbjct: 61  HAEQDGKFTIPAKKFLDICRSLPDNAEITVTFEED---RAIVRSDRSKFNLSTLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   +   ++ +  + + + + +++ + 
Sbjct: 176 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSEQPARLQIGTNNLRIQLNNITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +  +     +V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 350 EDCED---------ASAEYVIMPMRL 366


>gi|120596835|ref|YP_961409.1| DNA polymerase III subunit beta [Shewanella sp. W3-18-1]
 gi|146291113|ref|YP_001181537.1| DNA polymerase III subunit beta [Shewanella putrefaciens CN-32]
 gi|120556928|gb|ABM22855.1| DNA polymerase III, beta subunit [Shewanella sp. W3-18-1]
 gi|145562803|gb|ABP73738.1| DNA polymerase III, beta subunit [Shewanella putrefaciens CN-32]
 gi|319424419|gb|ADV52493.1| DNA polymerase III, beta subunit [Shewanella putrefaciens 200]
          Length = 366

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 121/386 (31%), Positives = 219/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILSNLLVEVSGHSLKLTGTDLEVELVGQAVVH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK++++ T F+MA +++RYYLNG+ F      L+  A+ATDGH
Sbjct: 118 NVEAFQAEIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNMLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L S D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRVIDAQLPE-KQVIVPRKGVMEMARLLESDDLDIAIAIGDNAIRATTANTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALTRASILSNEKFRGVRIQLENGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVDYNNQSLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|77456230|ref|YP_345735.1| DNA polymerase III subunit beta [Pseudomonas fluorescens Pf0-1]
 gi|77380233|gb|ABA71746.1| DNA polymerase III, beta chain [Pseudomonas fluorescens Pf0-1]
          Length = 367

 Score =  366 bits (941), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 212/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL  +   L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVDGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITV A  L DI + L + A I    + +   ++ +  G S F L + P ++FP
Sbjct: 61  EPAETGSITVPARKLMDICKSLPNDALIDIKVDEQ---KLVVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +  L  S L+ L+ERT FAMA +++RYYLNG+   ++   ++  AVATDGH
Sbjct: 118 TVEEGPGSLTTSLEQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSTGVIR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +           +IVPRK + E+ R+L+  D +V + L +  I       + + 
Sbjct: 176 RLAMCSMQADIGQQDRHQVIVPRKGILELARLLTEPDGNVSIVLGQHHIRATTGEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  
Sbjct: 236 KLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  +
Sbjct: 296 NNPEQEEAEEEVGVEYNGGSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D D         ++ YV+MPMR+
Sbjct: 351 QESDND---------DSAYVVMPMRL 367


>gi|332991510|gb|AEF01565.1| DNA polymerase III subunit beta [Alteromonas sp. SN2]
          Length = 366

 Score =  366 bits (940), Expect = 3e-99,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 214/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   L+ L      +ER++T+P+  +VL++ ++  L +  +  E+E+  ++   
Sbjct: 1   MKFSISREQFLQPLQLVSGAVERRHTLPILSNVLIKVSEDALWLTGTDLEVELISSVKLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L+DI+R + +G  I F  +   G +  I  G   + L +   +++P
Sbjct: 61  GEFTEGEITVPAKKLFDIIRGISEGTDIHFSID---GNKALIKAGRGRYTLSTLSANDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ E    FE+  S +K L++ T F+MA +++RYYLNG+     E  ++   VATDGH
Sbjct: 118 NLEDWEGEVEFEITCSDMKRLIDSTSFSMAQQDVRYYLNGMSLETEENIIR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +     +     +I+PRK V EI R+++  D S+KV +  + + +       + 
Sbjct: 176 RLALCRLSYETTLPAR-QVIIPRKGVLEISRLITEDDKSLKVQIGANHLRIFSNDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DKE+  +   L+ A  R +I+S+ + + V+L+LSS +L +T 
Sbjct: 235 KLVDGRFPDYRRVLPQDGDKEIIASKAVLKDAFSRAAILSNEKFRGVRLNLSSGELKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  YL+++++++ S     D+V   L  SN+S  I
Sbjct: 295 NNPEQEEAEEIVDVNYQGDDLEIGFNVAYLIDVLNSLGS-----DDVKISLSDSNASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D+         A YV+MPMR+
Sbjct: 350 EDAADDA---------ALYVIMPMRL 366


>gi|163751708|ref|ZP_02158927.1| DNA polymerase III, beta subunit [Shewanella benthica KT99]
 gi|161328447|gb|EDP99603.1| DNA polymerase III, beta subunit [Shewanella benthica KT99]
          Length = 366

 Score =  366 bits (940), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHTLKMTGTDLEVELVGQVQLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  T+ A    DIV+ L D  +I   ++      + +  G S F L + P  E+P
Sbjct: 61  GDVEEGRTTIPAKKFLDIVKSLPDQVEIKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E    F +   +LK+L++ T F+MA +++RYYLNG+    +   L+  A+ATDGH
Sbjct: 118 NVEAFESDIEFTIKQGILKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + K   +IVPRK V E+ R+   +D  V +++ ++ I     S  ++ 
Sbjct: 176 RLALSHRKIEANLPK-KQVIVPRKGVVELQRLYEGEDLDVTIAIGDNAIRATTSSAVLTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ L +T 
Sbjct: 235 KLIDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+  P++I FN  YLL++++N+ S     DEV   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DEVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         N+ YV+MPMR+
Sbjct: 350 ENHIEE---------NSMYVVMPMRL 366


>gi|315122098|ref|YP_004062587.1| DNA polymerase III subunit beta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
 gi|313495500|gb|ADR52099.1| DNA polymerase III subunit beta [Candidatus Liberibacter
           solanacearum CLso-ZC1]
          Length = 370

 Score =  366 bits (939), Expect = 4e-99,   Method: Composition-based stats.
 Identities = 278/386 (72%), Positives = 319/386 (82%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I VERS+ILE L H CRIIER+ TIPV+CHV LQ  DG L++KASGPEIEIT  IPA 
Sbjct: 1   MEIIVERSNILEPLNHVCRIIERRTTIPVACHVFLQTIDGSLKMKASGPEIEITEVIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++V GS TVSAHLLYDIVRK  +G++I F K +  GTEV +  GDS FYLQSF ESEFP+
Sbjct: 61  INVGGSATVSAHLLYDIVRKFPEGSEILFSKSDAQGTEVKVVSGDSQFYLQSFSESEFPN 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            KEE+Y YSFEL SSVLK L+ERTHFAMATEEIRYYLNGIFFHINEED  LCAVATDGHR
Sbjct: 121 IKEEDYEYSFELESSVLKILIERTHFAMATEEIRYYLNGIFFHINEEDSTLCAVATDGHR 180

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           LAVA+V++   IAKMPSIIVPRKAVGEI +I+S+ K  SVK+S+SESRIHLNI  LSMS+
Sbjct: 181 LAVAKVNVP--IAKMPSIIVPRKAVGEIQKIISTVKFLSVKISISESRIHLNIGRLSMSI 238

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDGEFP+YQNVIP +NDK LRVNC++LRQAVDRVS +SSVR QAVKLSLSS+KLCMTV
Sbjct: 239 RLIDGEFPHYQNVIPHNNDKVLRVNCSSLRQAVDRVSTISSVRNQAVKLSLSSEKLCMTV 298

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DNP+MGKAIE ++V Y++CPMDICFNYKYLLEII NIS     DD+VVFRLDSS+SS  I
Sbjct: 299 DNPEMGKAIEYLDVNYHDCPMDICFNYKYLLEIIGNIS-----DDDVVFRLDSSSSSALI 353

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +G +           +AFYVLMPMRI
Sbjct: 354 QGFEN---------KDAFYVLMPMRI 370


>gi|254510311|ref|ZP_05122378.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11]
 gi|221534022|gb|EEE37010.1| DNA polymerase III, beta subunit [Rhodobacteraceae bacterium KLH11]
          Length = 373

 Score =  366 bits (939), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 147/388 (37%), Positives = 236/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A       +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVSQAQSVVERRNTIPILANVLIEAEGDQALFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   ++  G  + +  G SNF L + P+ +FP 
Sbjct: 61  VEKAGATTVAATTLHEIVRKLPDGALVTLTADSAAG-RLTVEAGRSNFSLATLPKEDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
               EY  +F  ++++L+ L +++ FA++TEE RYYLNG++ H+   ++    L  VATD
Sbjct: 120 MASSEYQSNFTASAALLRRLFDKSKFAISTEETRYYLNGVYMHVADGSDGGKVLRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+    A +P +IVPRK VGE+ ++L   +  + VS+SE++I      +++
Sbjct: 180 GHRLARIDADLPDGAADLPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKIRFATPDITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N ++L V+     QAVDRV+ +SS R +AVKL L +DKL +
Sbjct: 240 TSKVIDGTFPDYTRVIPQGNTRKLEVDAAEFAQAVDRVATVSSERSRAVKLQLDADKLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +S+    
Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFMFNSAGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R         + N  +A YV+MPMR+
Sbjct: 355 LMR---------EGNDQSAVYVVMPMRV 373


>gi|16124411|ref|NP_418975.1| DNA polymerase III subunit beta [Caulobacter crescentus CB15]
 gi|221233094|ref|YP_002515530.1| DNA polymerase III subunit beta [Caulobacter crescentus NA1000]
 gi|239977224|sp|B8GXP6|DPO3B_CAUCN RecName: Full=DNA polymerase III subunit beta
 gi|239977225|sp|P0CAU5|DPO3B_CAUCR RecName: Full=DNA polymerase III subunit beta
 gi|1049324|gb|AAB51448.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15]
 gi|13421269|gb|AAK22143.1| DNA polymerase III, beta subunit [Caulobacter crescentus CB15]
 gi|220962266|gb|ACL93622.1| DNA polymerase III, beta chain [Caulobacter crescentus NA1000]
          Length = 372

 Score =  365 bits (938), Expect = 5e-99,   Method: Composition-based stats.
 Identities = 136/387 (35%), Positives = 214/387 (55%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  ++LL A    L   A+  ++EI     A 
Sbjct: 1   MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSAEGDRLSFSATDLDMEIIDEGFAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +DV G IT  AH LY+IVRKL DGA +S     +    + I  G S F L   P  +FP 
Sbjct: 61  IDVPGQITAPAHTLYEIVRKLPDGADVSLSFSGDD-PRLVIQAGRSRFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
              +       + ++ L  L+++T FA++TEE RYYLNG++ H   E    KL AVATDG
Sbjct: 120 MSSDGLSSRIAVDTNELIRLIDKTRFAISTEETRYYLNGLYVHTVNEGGETKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE+        +P +IVPRK + E  R++ S   +V + +S  ++     + +++
Sbjct: 180 HRLALAEMPAPEGAVGIPGVIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N K L ++     +AVDRV+ +S+ + ++VKL++   ++ +T
Sbjct: 240 SKVIDGAFPDYMRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E + V Y+  P +I FN +YLL++   I+       +  FR     S   
Sbjct: 300 VRNMEAGQAVEEVEVDYDGEPFEIGFNARYLLDVCGQIAG-----PQAEFRFADPASPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +                  YVLMP+R+
Sbjct: 355 VVDPVDPGVK---------YVLMPLRV 372


>gi|114045515|ref|YP_736065.1| DNA polymerase III subunit beta [Shewanella sp. MR-7]
 gi|113886957|gb|ABI41008.1| DNA polymerase III, beta subunit [Shewanella sp. MR-7]
          Length = 366

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVVH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L + D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  + +QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN  P++I FN  YLL++++N+ S     D+V   L   NSS  +
Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|312882234|ref|ZP_07741980.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC
           BAA-2122]
 gi|309370078|gb|EFP97584.1| DNA polymerase III subunit beta [Vibrio caribbenthicus ATCC
           BAA-2122]
          Length = 366

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++RS +L+ L      +  + T+P+  ++LL+  DG+L I A+  E+E+   +   
Sbjct: 1   MKFSIQRSHLLKPLQQVSGALGGRPTLPILGNLLLKVADGMLLITATDLEVELISRVNLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ITV +    DI R L D A I+F  E   G  V I  G S F L + P  +FP
Sbjct: 61  GEFEAGTITVPSRKFLDICRGLPDEAVITFVLE---GDRVQIRSGRSRFSLSTLPAHDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ LVE+T F+MA +++RYYLNG+ F +  +   L +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQAELRTLVEKTQFSMANQDVRYYLNGMLFEL--DGTTLSSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+A+V++  + A+   IIVPRK V E++++L + +  V + +  S +   + +   + 
Sbjct: 176 RMAMAQVNLEGEFAQQ-QIIVPRKGVLELVKLLDAPEQKVVLQVGSSNVRAEVNNYVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+  +  K L  +C  L+ A  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVMSLTPSKTLLADCDQLKHAFSRAAILSNEKFRGVRVNLTDSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    ++I FN  Y+L++++ +  +     EV   +  + SS  I
Sbjct: 295 NNPEQEEAEEILDVNYQGEAIEIGFNVGYVLDVLNTLKCN-----EVRVSMTDATSSTLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +S         A YV+ P+R+
Sbjct: 350 ENAQDNS---------AVYVVSPIRL 366


>gi|261868624|ref|YP_003256546.1| DNA polymerase III subunit beta [Aggregatibacter
           actinomycetemcomitans D11S-1]
 gi|261413956|gb|ACX83327.1| DNA polymerase III, beta subunit [Aggregatibacter
           actinomycetemcomitans D11S-1]
          Length = 367

 Score =  365 bits (938), Expect = 6e-99,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 2   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLL 61

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    DI R L D A+I+   E +      +    S F L + P  ++P
Sbjct: 62  HAEQDGKFTIPAKKFLDICRSLPDNAEIAVTFEED---RAIVRSDRSKFNLSTLPAEDYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 119 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   D   ++ +  + + + + +++ + 
Sbjct: 177 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +  +     +V  RL  ++SS  I
Sbjct: 296 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRMRLTDASSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 351 EDCED---------ASAEYVIMPMRL 367


>gi|251791867|ref|YP_003006587.1| DNA polymerase III subunit beta [Aggregatibacter aphrophilus
           NJ8700]
 gi|247533254|gb|ACS96500.1| DNA polymerase III, beta subunit [Aggregatibacter aphrophilus
           NJ8700]
          Length = 366

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 1   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTKTPLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    DI R L + A+I+   E +      +    S F L + P  ++P
Sbjct: 61  HAEQDGKFTIPAKKFLDICRSLPENAEITVTFEED---RAIVRSDRSKFNLSTLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   D   ++ +  + + + + +++ + 
Sbjct: 176 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +  +     +V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 350 EDCED---------ASAEYVIMPMRL 366


>gi|254417831|ref|ZP_05031555.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3]
 gi|196184008|gb|EDX78984.1| DNA polymerase III, beta subunit [Brevundimonas sp. BAL3]
          Length = 372

 Score =  365 bits (937), Expect = 7e-99,   Method: Composition-based stats.
 Identities = 139/387 (35%), Positives = 218/387 (56%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ERS +L+ LGH   ++ER+NTIP+  +VLL A    L   A+  ++E+     A+
Sbjct: 1   MQLTIERSALLKALGHVQSVVERRNTIPILSNVLLSAGRDRLAFAATDLDMEMVDEAEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+V G IT  AH LY+IVRKL +GA++S     +    + +S G S F L   P  +FP 
Sbjct: 61  VNVEGQITAPAHTLYEIVRKLPEGAEVSLLYSGDD-PRLVVSAGRSRFNLPVLPAGDFPI 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
              +    S+ +    L  L+++T FA++TEE RYYLNG++ H   E     L AVATDG
Sbjct: 120 MSTDSAGASYVMPKEDLARLIDKTRFAVSTEETRYYLNGLYLHTVAEAGVALLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE       A  P +IVPRK V ++ R+L      V++++S  +I   I   S++
Sbjct: 180 HRLALAETPAPEGAAGGPGVIVPRKTVDQVRRLLDDAAGPVEITVSAQKIRFQIGEASLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  NDK+  ++     +AVDRV+ +S+ + ++VKL+  +D++ +T
Sbjct: 240 SKVIDGAFPDYLRVIPKGNDKQADIDNALFAKAVDRVATISAEKSRSVKLAFDNDRVKLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A E + + Y++ P +I FN +YLL++   I+      +   FR     S   
Sbjct: 300 VRNMEAGQAEEEVEIGYSDEPFEIGFNARYLLDVAGQITG-----ENAAFRFADPASPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +                  YVLMP+R+
Sbjct: 355 VLDPGDPGVQ---------YVLMPLRV 372


>gi|149184745|ref|ZP_01863063.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21]
 gi|148832065|gb|EDL50498.1| DNA polymerase III subunit beta [Erythrobacter sp. SD-21]
          Length = 374

 Score =  364 bits (936), Expect = 9e-99,   Method: Composition-based stats.
 Identities = 151/391 (38%), Positives = 225/391 (57%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL++A    L + A+  ++++   I A 
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAEGNGLRVMATDLDLQVVEHIEAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           SV+  G+ITVSAHLL+DI RKL +G+Q+S          +++  G S F L + P  +FP
Sbjct: 61  SVESDGAITVSAHLLFDIARKLPEGSQVSLETAE---NRMDVKAGRSRFKLPTLPRDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDG 178
              E +   SF L +  L  +++RT FA++TEE RYYLNGIF H+++ED   L A ATDG
Sbjct: 118 MIVEGDLPTSFSLPAKTLAEMIDRTRFAISTEETRYYLNGIFLHVSDEDQPVLKAAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES--- 234
           HRLA   +        MP +IVPRKAV E+ ++L  K D  V++ LS S+I   +     
Sbjct: 178 HRLARFTLARPEGAEGMPDVIVPRKAVAELRKLLDEKMDGDVQIDLSASKIRFTLGGEGG 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + ++ +LIDG FP+Y  VIP  NDK L+++  +    VDRV+ +++ + +AVK+ L  D+
Sbjct: 238 VVLTSKLIDGTFPDYSRVIPTGNDKLLKIDPKSFFAGVDRVATIATEKTRAVKMGLDKDR 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +TV +PD G A E +   Y     +I FN  YL +I+  I S     D+V   L  + 
Sbjct: 298 VTLTVTSPDNGTASEELAAEYGSDGFEIGFNAGYLKDILSQIDS-----DQVEIHLADAG 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   IR  D            A YVLMPMR+
Sbjct: 353 APTLIRKNDDSP---------ALYVLMPMRV 374


>gi|114326983|ref|YP_744140.1| DNA polymerase III subunit beta [Granulibacter bethesdensis
           CGDNIH1]
 gi|114315157|gb|ABI61217.1| DNA polymerase III, beta chain [Granulibacter bethesdensis CGDNIH1]
          Length = 387

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 146/391 (37%), Positives = 215/391 (54%), Gaps = 22/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ER+ +L+ L H   ++E++NTIP+  +VLL+  DG L   A+  EI I   +PA 
Sbjct: 13  MKFKAERAVLLKALAHVQSVVEKRNTIPILANVLLEVKDGSLRFTATDMEIAIVEDVPAE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++T  A  LY+IVRKL DGA +    +     ++ +  G     L   P  +FPS
Sbjct: 73  GLRDGAVTAPAGTLYEIVRKLPDGADVELDHQAGDQ-QLMLKSGRYATKLVVLPTDDFPS 131

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE---EDLKLCAVATD 177
                  + F LA +VL+ L++RT FA++TEE RYYLNGI+FH  +   +   L AVATD
Sbjct: 132 MTTGALPHQFRLAGNVLRGLIDRTRFAISTEETRYYLNGIYFHAAQGGPDGAALRAVATD 191

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  E  +      MP +IVPRK V E+ ++L     +V V+LS++RI      +++
Sbjct: 192 GHRLARVEEPLPEGALGMPGVIVPRKTVAELRKLLDEVTDTVDVALSDTRIQFVAGPVTL 251

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP Y+ VIP  NDK LRV   +   AV RV+ +SS R + VK++L  + L +
Sbjct: 252 TSKLIDGTFPEYERVIPKDNDKVLRVGKNDFSAAVARVAAISSERSRPVKMALDRNLLVL 311

Query: 298 TVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           +  +PD G A E ++   + Y    ++I F  +YL +I D I       +EV FR    +
Sbjct: 312 SASSPDQGTATEELDGDRIQYEAGALEIGFQARYLNDITDQI------AEEVEFRFADGS 365

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   ++     S         A YVLMPMR+
Sbjct: 366 APTVVQDAADSS---------ALYVLMPMRV 387


>gi|88860615|ref|ZP_01135252.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2]
 gi|88817210|gb|EAR27028.1| DNA polymerase III, beta-subunit [Pseudoalteromonas tunicata D2]
          Length = 368

 Score =  364 bits (935), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 129/387 (33%), Positives = 224/387 (57%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL+  DG L +  +  EIE+   +  S
Sbjct: 2   MQITIPRDQFLKPLIQVSGAIERKHTLPILSNVLLEIADGKLMMTGTDLEIELVACVTLS 61

Query: 61  --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V+    +T+ A  L DI + L DG++I+   ++   ++V ++ G S F L S P  +F
Sbjct: 62  HFVEDS-KLTLPAKKLLDICKSLPDGSEITLSAQD---SQVLLTSGKSRFSLASLPALDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ ++ +    F++  + L+ L+E THF+MA +++RYYLNG+ F ++  ++K   VATDG
Sbjct: 118 PNLEQWDGEVDFQITRNELRKLLESTHFSMANQDVRYYLNGMSFEVDNSEIK--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+++  +   +     +I+PRK V EI+R++ S D+ V +    +   +  +  + +
Sbjct: 176 HRLALSQKKLDYSLNTQRQLIIPRKGVQEIMRLMVSDDNLVTIQFGANHFRIIDQEFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+ S+ +L +T
Sbjct: 236 SKLVDGRFPDYRRVLPRGGDKVVTANREWLRSAFSRVSILSNEKFRGVRLNFSAGELKIT 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + V Y+   ++I FN  Y+L++++ + +     ++V F L  SNSS  
Sbjct: 296 ANNPEQEQAEEIVEVVYSGPDLEIGFNVSYVLDVLNTLKT-----EDVSFTLSDSNSSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + G   D          A YV+MPMR+
Sbjct: 351 VEGTGDDE---------AMYVVMPMRL 368


>gi|113968348|ref|YP_732141.1| DNA polymerase III subunit beta [Shewanella sp. MR-4]
 gi|117918469|ref|YP_867661.1| DNA polymerase III subunit beta [Shewanella sp. ANA-3]
 gi|113883032|gb|ABI37084.1| DNA polymerase III, beta subunit [Shewanella sp. MR-4]
 gi|117610801|gb|ABK46255.1| DNA polymerase III, beta subunit [Shewanella sp. ANA-3]
          Length = 366

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQAVIH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L + D  + +++ ++ I     +   + 
Sbjct: 176 RLALSHRTIDAQLPE-KQVIVPRKGVMEMARLLEADDLDIAIAIGDNAIRATTSTTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  + +QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN  P++I FN  YLL++++N+ S     D+V   L   NSS  +
Sbjct: 295 NNPEQEEAEEIIDVDYNNQPLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|110832863|ref|YP_691722.1| DNA polymerase III subunit beta [Alcanivorax borkumensis SK2]
 gi|110645974|emb|CAL15450.1| DNA polymerase III, beta subunit [Alcanivorax borkumensis SK2]
          Length = 366

 Score =  364 bits (934), Expect = 1e-98,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 216/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +L+ L     ++E++ T+PV  +VLL+  DG L +  +  E+E+   +P  
Sbjct: 1   MKFSINREQLLKPLQQVAAVVEKRQTLPVLSNVLLEVGDGQLSMTGTDLELELVARLPLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A  L DI + L   A I F  +   G  + +  G S F L + P SEFP
Sbjct: 61  GELEPGETTVPARKLVDIGKSLPAEADIRFEVD---GERMLVRSGRSRFTLSTLPASEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E+    S E+   VL+ L++RT F+MA +++RYYLNG+ F +     +L AVATDGH
Sbjct: 118 NLEEDAAGSSLEIKPDVLRGLIDRTAFSMAQQDVRYYLNGMLFELK--SGRLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + ++   + +  S+I+PRK V E+ RIL       ++++  + + + + +++ + 
Sbjct: 176 RLALCDAELDVPVEE-ASVILPRKGVMELSRILGDSGEVARLTIGRNHVRIVVGAITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y  VIP    +++  +   LRQA+ RV+I+S+ + + V++ LS   L +  
Sbjct: 235 KLVDGKFPEYDRVIPKEGSRKVVADRETLRQALARVAILSNEKYRGVRVQLSEGSLRIVA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +N  P++I FN  YLL++++ +        +    +  SNSS  +
Sbjct: 295 NNPEQEEAEEEVSVDFNGSPLEIGFNVSYLLDVLNTMGGT-----QAELEMGDSNSSALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  +         A YV+MPMR+
Sbjct: 350 FDPESKA---------AVYVVMPMRL 366


>gi|126668222|ref|ZP_01739183.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17]
 gi|126627371|gb|EAZ98007.1| DNA polymerase III, beta subunit [Marinobacter sp. ELB17]
          Length = 351

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 118/369 (31%), Positives = 201/369 (54%), Gaps = 20/369 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYD 76
             ++E+K T+PV  +VLL A D  L +  +  E+E+   I P  +D  G ITV A  L D
Sbjct: 2   AGVVEKKQTMPVLSNVLLVAEDNTLTLTGTNMEVELVARITPVHIDQPGRITVPARKLAD 61

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           I R L + + I     ++ G  +++  G S+F L + P   FP+ ++E   +  EL    
Sbjct: 62  ICRALGEESPIEL---DQQGDRLHLRCGKSHFTLATLPAEHFPNVEDEAESFRLELPQKE 118

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           L+ + + T FAMA +++RYYLNG+   +  + ++   VATDGHRLA+A  D+     +  
Sbjct: 119 LRRMFDSTAFAMAQQDVRYYLNGLLLEVAADHVR--TVATDGHRLAMAHQDVETGCPEAR 176

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
            +IVPRK V E+ R+L   D+ V + + ++ +   + S + + +LI+G+FP+Y  VIP  
Sbjct: 177 QVIVPRKGVLELARLLDDVDTPVTLVIGDNHLRATVGSYTFTSKLIEGKFPDYNRVIPRG 236

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            DK +  +   L+  + R  I+S   I+ V+L+L++++L +  +NPD  +A +++ V Y 
Sbjct: 237 GDKVVLADRITLKNTLQRAGILSHENIRGVRLNLAANELQVFANNPDQEQAEDALPVDYQ 296

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I FN  YL+++++ +      DD+V   L + NSS  I  +              
Sbjct: 297 GETLQIGFNVGYLIDVMNALD-----DDQVKVTLSNPNSSALIESQ---------TDARC 342

Query: 377 FYVLMPMRI 385
            YV+MPMR+
Sbjct: 343 LYVVMPMRL 351


>gi|127510937|ref|YP_001092134.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4]
 gi|126636232|gb|ABO21875.1| DNA polymerase III, beta subunit [Shewanella loihica PV-4]
          Length = 366

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAELQ 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV A    DIV+ L D  ++   +++     + +  G S F L + P  E+P
Sbjct: 61  GEVQEGRTTVPAKKFLDIVKSLPDQVELKIEQQD---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +    F L    LK+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVDAFQADIEFTLKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +   + +   +IVPRK V E+ R+   +D  V +S+ E+ I    +S   + 
Sbjct: 176 RLALSHRMVQDSLPE-KQVIVPRKGVLELQRLFEGEDLDVTLSIGENAIRATTQSAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L  + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLEQNLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E +++ Y+  P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDIEYDNAPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHVEE---------DSMYVVMPMRL 366


>gi|114319168|ref|YP_740851.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1]
 gi|114225562|gb|ABI55361.1| DNA polymerase III, beta subunit [Alkalilimnicola ehrlichii MLHE-1]
          Length = 366

 Score =  363 bits (933), Expect = 2e-98,   Method: Composition-based stats.
 Identities = 129/385 (33%), Positives = 211/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R D+L+ L     ++ER+ T+PV  +V L+  DGL  + A+  E+E+  ++P  
Sbjct: 1   MRIDIQREDLLKPLQAIIGVVERRQTLPVLANVRLELGDGLARLTATDLEVELVASLPCQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G IT+ A  L DI R L D +QI    +   G   ++  G S F L +    ++PS
Sbjct: 61  VTEGGDITLPARKLLDICRNLPDQSQIQLQVD---GERASLRAGRSRFTLATLSADDYPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++     +  L    L+ L+ERTHF+MA +++RYYLNG+   +     ++  VATDGHR
Sbjct: 118 IEDIGARETVRLPQGQLRKLIERTHFSMAVQDVRYYLNGLMVELEPAMARM--VATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AE  I   +     +IVPRK V E+LR+L   D    + L ++ I + +  +  + +
Sbjct: 176 LALAEQAIDTGVEAPRQVIVPRKGVQELLRLLDHSDEGADLELGDNHIRVKLGDVRFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ V+P + +    VN  +LR A+ RVSI+S+ + + V+  L    L +   
Sbjct: 236 LIDGRFPDYRRVVPEATETPATVNREDLRHALLRVSILSNEKYRGVRFLLDGGTLKVASH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E ++V Y   P+++ FN  Y+L+ +  +      D++V   L  S SS  I+
Sbjct: 296 NPEQEEAEEEVSVDYGGAPLEVGFNAGYVLDALGALD-----DEDVRLTLRDSASSGLIQ 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G D  +         + YV+MPMR+
Sbjct: 351 GVDDQT---------SRYVVMPMRL 366


>gi|294138803|ref|YP_003554781.1| DNA polymerase III subunit beta [Shewanella violacea DSS12]
 gi|293325272|dbj|BAJ00003.1| DNA polymerase III, beta subunit [Shewanella violacea DSS12]
          Length = 366

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 217/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVNGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            DV  G ITV A    DIV+ L D  ++   ++      + +  G S F L + P  E+P
Sbjct: 61  GDVVEGRITVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F +    LK+L++ T F+MA +++RYYLNG+    +   L+  A+ATDGH
Sbjct: 118 NVEAFQSDIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETDGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + +   +IVPRK V E+ R+   +D  V +++ ++ I     S  ++ 
Sbjct: 176 RLALSHRQIEATLPE-KQVIVPRKGVVELQRLFEGEDLDVTIAIGDNAIRATTSSAVLTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVIASRNQLKQALLRASILSNEKFRGVRVQLENNLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+  P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVEYDNTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHIEE---------DSMYVVMPMRL 366


>gi|293391840|ref|ZP_06636174.1| DNA polymerase III, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
 gi|290952374|gb|EFE02493.1| DNA polymerase III, beta subunit [Aggregatibacter
           actinomycetemcomitans D7S-1]
          Length = 366

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R ++L+ L   C ++  +  IPV  +VLLQ  +  L I  +  E+E++   P  
Sbjct: 1   MQFIISRENLLKPLQQVCGVLNSRPNIPVLNNVLLQIENNQLNITGTDLEVELSTQTPLF 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G  T+ A    D+ R L D A+I+   E +      +    S F L + P  ++P
Sbjct: 61  HAEHDGKFTIPAKKFLDLCRSLPDNAEITVTFEED---RAIVRSDRSKFNLSTLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQATLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E+ R+L   D   ++ +  + + + + +++ + 
Sbjct: 176 RLAVCTIPLE-QDLQTHSVILPRKGVLELARLLEPSDQPARLQIGTNNLRIQLNNITFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEAGWETLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y+   M++ FN  Y+L++++ +  +     +V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYSGEEMEVGFNVSYILDVLNALKCN-----QVRIRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 350 EDCED---------ASAEYVIMPMRL 366


>gi|114561190|ref|YP_748703.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB
           400]
 gi|114332483|gb|ABI69865.1| DNA polymerase III, beta subunit [Shewanella frigidimarina NCIMB
           400]
          Length = 366

 Score =  363 bits (932), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ ++  L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSESSLKLTGTDLEVELVGQAAIH 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+  G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  ++P
Sbjct: 61  GDIDIGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E +    F L   VLK++++ T F+MA +++RYYLNG+ F      L+  A+ATDGH
Sbjct: 118 NVEEFQADIEFSLKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +   + +   +IVPRK V E+ R+L S D  + +++ ++ I     S   + 
Sbjct: 176 RLALSHRTLDVSLPE-KQVIVPRKGVVEMARLLDSDDQDITIAIGDNAIRAITSSAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   +K +  +   L+QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGNKVVIASRNQLKQALTRASILSNEKFRGVRIQLETGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  YLL++++N++S     DEV   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVEYDSDNLEIGFNVSYLLDVLNNLAS-----DEVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHKEE---------DSMYVVMPMRL 366


>gi|254465740|ref|ZP_05079151.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I]
 gi|206686648|gb|EDZ47130.1| DNA polymerase III, beta subunit [Rhodobacterales bacterium Y4I]
          Length = 373

 Score =  363 bits (931), Expect = 3e-98,   Method: Composition-based stats.
 Identities = 150/388 (38%), Positives = 235/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A    ++ +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDSVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLAVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+    E    L AVATD
Sbjct: 120 MASSEYHSNFAAKAAVLRRLFDKSKFAISTEETRYYLNGVYLHVANGAEGGKALRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   D  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDAELPLGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+     QAVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFAQAVDRVATVSSERSRAVKLQLEEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V YN+  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYNDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R  + +S         A YV+MPMR+
Sbjct: 355 LMREGNDES---------AVYVVMPMRV 373


>gi|331007622|ref|ZP_08330764.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989]
 gi|330418562|gb|EGG93086.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC1989]
          Length = 369

 Score =  362 bits (930), Expect = 5e-98,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 213/387 (55%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R  +L  L     ++ER+ T+PV  +VL+   +  L +  +  E+EI   +P  
Sbjct: 1   MKFSVSREALLVPLQLVAGVVERRQTLPVLANVLVVLENETLSLTGTDLEVEIVARLPLE 60

Query: 61  --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V   G IT+ A  L DI R L DGA + F  + +   +V +  G S F L + P ++F
Sbjct: 61  NPVQDTGEITIPAKKLVDICRSLPDGATVEFILQEDQ--KVIVKSGRSRFTLATLPSNDF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PST++ E    F  + S++K L++RT FAMA +++RYYLNG+ + +     +L  VATDG
Sbjct: 119 PSTEKSEGDLQFSCSQSIIKRLIDRTAFAMAQQDVRYYLNGMLWEVEGN--RLRCVATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+   ++   + +    I+PRK V E+ R+L+ +++ + ++L    I ++  + + +
Sbjct: 177 HRLAMCVRELDIDVPEKSQAILPRKGVIELSRLLNDQEAQIDLTLGTHHIRVDTPNYTFT 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG+FP+Y+ V+P      +  N T L+QA  R +I+S+ + + V+L+ +   L + 
Sbjct: 237 SKLVDGKFPDYERVLPKGGTNVVLGNRTELKQAFARTAILSNEKYRGVRLNFTEGLLNIV 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E + + Y    ++I FN  YL +I   +++     + V   L  +NSS  
Sbjct: 297 ANNPEQEEAEEQVVIDYKGDEIEIGFNVSYLQDITSVLNT-----ENVKITLSDANSSAL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   ++          ++ YV+MPMR+
Sbjct: 352 LEEPEE---------GDSVYVVMPMRL 369


>gi|197106929|ref|YP_002132306.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1]
 gi|196480349|gb|ACG79877.1| DNA polymerase III, beta subunit [Phenylobacterium zucineum HLK1]
          Length = 372

 Score =  362 bits (929), Expect = 7e-98,   Method: Composition-based stats.
 Identities = 132/387 (34%), Positives = 215/387 (55%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L  LGH    +ER+NTIP+  +VLL A    L   A+  ++EI     A 
Sbjct: 1   MKLTIERAALLRALGHVQSAVERRNTIPILSNVLLSAERDRLTFSATDLDMEIIDEAMAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G IT  AH LY+IVRKL +GA +S     E    + +  G S F L   P  +FP 
Sbjct: 61  VDQPGQITAPAHTLYEIVRKLPEGADVSLSFTGED-PRLAVQAGRSRFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
              E +     +  + L  L+++T FA++ EE RYYLNG++ H  + +   +L AVATDG
Sbjct: 120 MSAEGFSGRMGVDVTDLIRLIDKTRFAISAEETRYYLNGLYLHTIVVDGSPRLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+A++      A  P +IVPRK VGE  R+L      V++ +S  +I    +  +++
Sbjct: 180 SRLALADMPAPEGAAGAPGVIVPRKTVGEARRLLEDAGEQVELQVSPQKIRFEFDGAALT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N++ + V+     QAVDRV+ +S+ + ++V++++ + K+ +T
Sbjct: 240 SKVIDGNFPDYARVIPKDNNRIVMVDAKLFAQAVDRVATISAEKSRSVRMAIEAGKVVLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E + + Y+  P ++ FN +YLL+I     +D++  ++   R    N    
Sbjct: 300 VRNMEAGQAVEELEIDYDGEPFELSFNARYLLDI-----TDQISGEQAELRFGGPNDPAL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +               +  Y+LMP+R+
Sbjct: 355 VLDP---------ADADVQYILMPLRV 372


>gi|91791371|ref|YP_561022.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217]
 gi|91713373|gb|ABE53299.1| DNA polymerase III, beta subunit [Shewanella denitrificans OS217]
          Length = 366

 Score =  361 bits (928), Expect = 8e-98,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +  ++ +  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVKVSQDVISLTGTDLEVELVGQAAIH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D V G+ TV A  L DIV+ L + +++   +++       +  G S F L + P S++P
Sbjct: 61  GDIVPGNTTVPAKKLLDIVKSLPEQSELHVEQQD---NRWLLRSGRSRFTLATLPASDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F +   VLK++++ T F+MA +++RYYLNG+ F      LK  A+ATDGH
Sbjct: 118 NVEAFQAEIEFTIKQGVLKSIIDSTQFSMANQDVRYYLNGLLFETEGNTLK--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I   + +   +IVPRK V E+ R+L S D  + +++ ES I    ++   + 
Sbjct: 176 RLALSHRQIDVSLPE-KQVIVPRKGVVEMSRLLDSDDKDISIAIGESAIRAVTDTAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L    L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVVASRQQLKQALTRASILSNEKFRGVRIQLEPGLLRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y+   ++I FN  YLL++++N++S     ++V   L   NSS  I
Sbjct: 295 NNPEQEEAEEIIDVDYDSANLEIGFNVSYLLDVLNNLAS-----EDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHKEE---------DSMYVVMPMRL 366


>gi|119773156|ref|YP_925896.1| DNA-directed DNA polymerase [Shewanella amazonensis SB2B]
 gi|119765656|gb|ABL98226.1| DNA polymerase III, beta subunit [Shewanella amazonensis SB2B]
          Length = 366

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEATVH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DIV+ L +  +I   K  +   +  +  G S F L + P  E+P
Sbjct: 61  GDVQEGRTTVPAKKLLDIVKSLPEQTEI---KVEQQENKWLLRCGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +       F L    LK+L++ T F+MA +++RYYLNG+        L+  AVATDGH
Sbjct: 118 NVEAFRPDIEFTLKQGTLKSLIDSTQFSMANQDVRYYLNGLLIETEGNVLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + +   +IVPRK V E+ R+L ++D  + +++ ES I     +   + 
Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVVELSRLLDAEDQDITLAIGESAIRATTATAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L    L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNQLKQALLRASILSNEKFRGVRILLEDGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN   ++I FN  YLL++++++ S     DEV   L  SNSS  I
Sbjct: 295 NNPEQEEAEEIIDVDYNSTTLEIGFNVSYLLDVLNSLRS-----DEVRVTLIDSNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHVEE---------DSMYVVMPMRL 366


>gi|212632926|ref|YP_002309451.1| DNA polymerase III subunit beta [Shewanella piezotolerans WP3]
 gi|212554410|gb|ACJ26864.1| DNA polymerase III, beta subunit [Shewanella piezotolerans WP3]
          Length = 366

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSAHSLKLTGTDLEVELVGEVLLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +V  G  TV A    DIV+ L D  ++   ++      + +  G S F L + P  E+P
Sbjct: 61  GEVFEGRTTVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  E    F L    +K+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVEAFEAELEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + +   +IVPRK V E++R     +  V +++ ++ I     +   + 
Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEGDELDVTIAIGDNAIRATTATAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRQQLKQALLRASILSNEKFRGVRVQLENNLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +   + ++ YV+MPMR+
Sbjct: 350 ---------DNHVEQDSMYVVMPMRL 366


>gi|254490238|ref|ZP_05103428.1| DNA polymerase III, beta subunit [Methylophaga thiooxidans DMS010]
 gi|224464585|gb|EEF80844.1| DNA polymerase III, beta subunit [Methylophaga thiooxydans DMS010]
          Length = 367

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 136/385 (35%), Positives = 219/385 (56%), Gaps = 18/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV +  I+  L   C I+ER+ T+P+  +VLL+ +   L + ++  E+E+   +P S
Sbjct: 1   MQFTVSQETIVRPLQLVCSIVERRATLPILSNVLLRVHGNQLSMTSTDMELEMIATLPVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G ITVSA    DIVR L   A IS    N    +  +  G S F L + P  +FP 
Sbjct: 61  VEEEGKITVSARKFLDIVRALPGNATISL---NAKDNKAVVKAGKSRFSLSTLPSDDFPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           ++   Y+    L  S LK+L++ T FAMA++++RYYLNG+      E+  L AVATDGHR
Sbjct: 118 SEGANYIDEISLPQSALKSLLDETSFAMASQDVRYYLNGLLLE--REETTLRAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  +     +A+  S+IVPRKA+ E+ R+L+  D  VK++ S  +I + +  +  + +
Sbjct: 176 LAMGSLTTANPVAEKNSVIVPRKAIIELGRLLNETDDDVKLAFSNQQIKVELPDIHFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ V+P   DKE+      L+QA+ R +I+S+ + ++V+++L +D+L  TV 
Sbjct: 236 LIDGQFPNYERVLPLGGDKEVLAERDELKQALSRAAILSNDKHRSVRINLDTDQLKATVT 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +   A E ++V Y   P++I FN  YLL++++ I      D++V        SS  + 
Sbjct: 296 NQEQESAEEEISVDYKGSPLEIAFNNAYLLDLLNAIP-----DEKVKILFTDETSSALVT 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D+  +          YV+MPMR+
Sbjct: 351 PADQKFERQ--------YVVMPMRL 367


>gi|24371609|ref|NP_715651.1| DNA polymerase III, beta subunit [Shewanella oneidensis MR-1]
 gi|24345359|gb|AAN53096.1|AE015452_9 DNA polymerase III, beta subunit [Shewanella oneidensis MR-1]
          Length = 366

 Score =  361 bits (927), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 218/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L   C  +ER++ +P+  ++L++ +   L++  +  E+E+ G     
Sbjct: 1   MKFSIDRDALLKPLQLVCGAVERRHNLPILANLLVEVSGHSLKLTGTDLEVELVGQAVIH 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  TV A  L DIV+ L + +++   +++    +  +  G S F L + P  E+P
Sbjct: 61  GDIEEGRTTVPAKKLLDIVKSLPEQSELKVEQQD---NKWLLRSGRSRFSLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F L   VLK+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVEAFQAEIEFTLKQGVLKSLIDATQFSMANQDVRYYLNGLLIETEGNMLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I AQ+ +   +IVPRK V E+ R+L + D  + +S+ ++ I     +   + 
Sbjct: 176 RLALSHRVIEAQLPE-KQVIVPRKGVMEMARLLETDDLDIAISIGDNAIRATTSTTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  + +QA+ R SI+S+ + + V++ L +  L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHFKQALTRASILSNEKFRGVRIQLEAGLLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V YN  P++I FN  YLL++++N+ S     D+V   L   NSS  +
Sbjct: 295 NNPEQEEAEEIIDVDYNNLPLEIGFNVSYLLDVLNNLKS-----DDVRITLIDGNSSALL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHLEE---------DSMYVVMPMRL 366


>gi|157373148|ref|YP_001471748.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
 gi|157315522|gb|ABV34620.1| DNA-directed DNA polymerase [Shewanella sediminis HAW-EB3]
          Length = 366

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   G  T+ A    DIV+ L D  ++   ++      + +  G S F L + P  E+P
Sbjct: 61  GDVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F +    LK+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVEAFQADIEFTIKQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +   + +   +IVPRK V E+ R+   +D  + +++ ++ I     S   + 
Sbjct: 176 RLALSHRMVEESLPE-KQVIVPRKGVVELQRLFEGEDLDITIAIGDNAIRATTGSAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L ++ + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRNHLKQALLRASILSNEKFRGVRVQLENNLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         N+ YV+MPMR+
Sbjct: 350 ENHIEE---------NSMYVVMPMRL 366


>gi|258542325|ref|YP_003187758.1| DNA polymerase III subunit beta [Acetobacter pasteurianus IFO
           3283-01]
 gi|256633403|dbj|BAH99378.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-01]
 gi|256636462|dbj|BAI02431.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-03]
 gi|256639515|dbj|BAI05477.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-07]
 gi|256642571|dbj|BAI08526.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-22]
 gi|256645626|dbj|BAI11574.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-26]
 gi|256648679|dbj|BAI14620.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-32]
 gi|256651732|dbj|BAI17666.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-01-42C]
 gi|256654723|dbj|BAI20650.1| DNA polymerase III beta subunit [Acetobacter pasteurianus IFO
           3283-12]
          Length = 374

 Score =  361 bits (926), Expect = 1e-97,   Method: Composition-based stats.
 Identities = 148/390 (37%), Positives = 222/390 (56%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ER+ +L+ L H   + E++NTIP+  +VL+QA +G L +KA+  EIE+   +PA 
Sbjct: 1   MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEEVPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ T  A +LY+IVRKL DG  +   + +  G  + +  G     L      +FPS
Sbjct: 61  ITREGATTAPAAVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               ++ + F+L ++ L +L++RT FA++TEE RYYLNGIF H  E D   KL AVATDG
Sbjct: 120 MGAGDFPHRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEAKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E D+ A  A MP +IVPRK V E+ +++      V+++LSE+RI      ++++
Sbjct: 180 HRLARVEADLPAGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP +N + LRV   +   AV RV+ +S  R + VKL+L    L ++
Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             + + G A E ++   + Y+   ++I F  +YL +I D       V+ EV F    S S
Sbjct: 300 ASSAEQGVAKEELDDNRISYDAEGLEIGFQARYLNDITDQ------VEKEVEFAFADSAS 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R  D  S         A YVLMPMR+
Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374


>gi|329113488|ref|ZP_08242269.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001]
 gi|326697313|gb|EGE48973.1| DNA polymerase III subunit beta [Acetobacter pomorum DM001]
          Length = 374

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 147/390 (37%), Positives = 222/390 (56%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ER+ +L+ L H   + E++NTIP+  +VL+QA +G L +KA+  EIE+   +PA+
Sbjct: 1   MKFSAERATLLKALAHIQSVAEKRNTIPILANVLIQAANGQLSLKATDMEIEVVEGVPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ T  A +LY+IVRKL DG  +   + +  G  + +  G     L      +FPS
Sbjct: 61  ITREGATTAPASVLYEIVRKLPDGVDVELDQADSEGP-LLLRAGRYATRLNVLSVDDFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               ++ Y F+L ++ L +L++RT FA++TEE RYYLNGIF H  E D   KL AVATDG
Sbjct: 120 MGAGDFPYRFKLPATTLHSLIDRTRFAISTEETRYYLNGIFLHGTEVDGEPKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E D+ +  A MP +IVPRK V E+ +++      V+++LSE+RI      ++++
Sbjct: 180 HRLARVEADLPSGAAGMPGVIVPRKTVAEVRKLIDEAPEEVEIALSETRIQFTAGPVTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP +N + LRV   +   AV RV+ +S  R + VKL+L    L ++
Sbjct: 240 SKLIDGTFPEYERVIPRNNTRILRVGKKDFADAVARVAAISQERSRPVKLTLEPGLLTLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             + + G A E ++   + Y+   ++I F  +YL +I D +        EV F    S S
Sbjct: 300 ASSTEQGMAKEELDDNRISYDAEGLEIGFQARYLNDITDQVE------KEVEFAFADSAS 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R  D  S         A YVLMPMR+
Sbjct: 354 PTIVRDVDSPS---------ALYVLMPMRV 374


>gi|157959832|ref|YP_001499866.1| DNA polymerase III subunit beta [Shewanella pealeana ATCC 700345]
 gi|157844832|gb|ABV85331.1| DNA polymerase III, beta subunit [Shewanella pealeana ATCC 700345]
          Length = 366

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 213/386 (55%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ ++  L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSNHSLKLTGTDLEVELVGEVQLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G  TV A    DIV+ L D  ++   ++      + +  G S F L + P  E+P
Sbjct: 61  GEILEGRTTVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F L    +K+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + +   +IVPRK V E++R   + D  V +++ ++ I     +   + 
Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +   + ++ YV+MPMR+
Sbjct: 350 ---------DNHIEQDSMYVVMPMRL 366


>gi|254474541|ref|ZP_05087927.1| DNA polymerase III, beta subunit [Ruegeria sp. R11]
 gi|214028784|gb|EEB69619.1| DNA polymerase III, beta subunit [Ruegeria sp. R11]
          Length = 373

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A     + +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYHSNFTANAAILRRLFDKSKFAISTEETRYYLNGVYMHVADAVEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDAAEFARAVDRVATVSSERSRAVKLQLDDDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y++  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFLFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R  + +S         A YV+MPMR+
Sbjct: 355 LMREGNDES---------AVYVVMPMRV 373


>gi|163743747|ref|ZP_02151121.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10]
 gi|161383008|gb|EDQ07403.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis 2.10]
          Length = 373

 Score =  360 bits (924), Expect = 2e-97,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 234/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A   +++ +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYHSNFTANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R    +S         A YV+MPMR+
Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373


>gi|126738626|ref|ZP_01754331.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6]
 gi|126720425|gb|EBA17131.1| DNA polymerase III subunit beta [Roseobacter sp. SK209-2-6]
          Length = 373

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 145/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A     + +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDTAQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  +++  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTSDAATG-RLSVDAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H++   E    L  VATD
Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +  +      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDAPLPLGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLEEDRLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     + +V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYGDERLEIGFNAKYLLEI-----ASQVDRENAVFLFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R  + +S         A YV+MPMR+
Sbjct: 355 LMREGNDES---------AVYVVMPMRV 373


>gi|167621943|ref|YP_001672237.1| DNA polymerase III subunit beta [Shewanella halifaxensis HAW-EB4]
 gi|167351965|gb|ABZ74578.1| DNA polymerase III, beta subunit [Shewanella halifaxensis HAW-EB4]
          Length = 366

 Score =  360 bits (924), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVSGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGEVQLE 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +V  G  TV A    DIV+ L D  ++   ++      + +  G S F L + P  E+P
Sbjct: 61  GEVVEGRTTVPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F L    +K+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVDAFEAEIEFTLKQGTMKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I A + +   +IVPRK V E++R   + D  V +++ ++ I     +   + 
Sbjct: 176 RLALSHRMIEASLPE-KQVIVPRKGVLELMRSFEADDLDVTIAIGDNAIRATTATAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +   L+QA+ R SI+S+ + + V++ L ++ + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKIVIASRLQLKQALLRASILSNEKFRGVRVQLENNLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +   + ++ YV+MPMR+
Sbjct: 350 ---------DNHIEQDSMYVVMPMRL 366


>gi|296532158|ref|ZP_06894919.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis
           ATCC 49957]
 gi|296267517|gb|EFH13381.1| DNA-directed DNA polymerase III beta subunit [Roseomonas cervicalis
           ATCC 49957]
          Length = 375

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 149/391 (38%), Positives = 217/391 (55%), Gaps = 22/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK +V+R+ +L+ L H   ++ER+NTIP+  +V+L A DG L + A+  EI I   +P  
Sbjct: 1   MKFSVDRAVLLKALAHVQSVVERRNTIPILANVMLAAQDGTLTLTATDMEIAIVEDVPGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V   G  T  A  LY+IVRKL DGA++           + +  G     L   P  +FP
Sbjct: 61  TVSRAGRTTAPAATLYEIVRKLPDGAKVELDHAGGDAP-LALRAGRFATSLMVLPVEDFP 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
           S  E +  + F++  ++L+ LV+RT FA++TEE RYYLNGI+ H  E D +  L AVATD
Sbjct: 120 SMTEGKLPHGFQIPPALLRELVDRTKFAISTEETRYYLNGIYLHATEVDGQKVLRAVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  E  +      MP +IVPRK V EI ++      +++V LS+++I     S+ +
Sbjct: 180 GHRLARVEEPLPEGAEGMPGVIVPRKTVNEIRKLADETGDAIEVKLSDTKISFAFGSVRL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP Y+ VIP  NDK + V+      AV RV+ +SS R + VKLSL  D L +
Sbjct: 240 TSKLIDGTFPEYERVIPRGNDKIMTVDKKAFADAVSRVAAISSERSRPVKLSLKQDSLTL 299

Query: 298 TVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           T  +PD G+A E ++   V Y   P++I F  +YL +I D I       ++V FR    +
Sbjct: 300 TASSPDQGQAEEELDNGAVSYGSGPIEIGFQARYLADITDQI------AEKVEFRFADGS 353

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   +             K  A YVLMPMR+
Sbjct: 354 APTVVVDA---------AKPEALYVLMPMRV 375


>gi|163738135|ref|ZP_02145551.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107]
 gi|161388751|gb|EDQ13104.1| DNA polymerase III subunit beta [Phaeobacter gallaeciensis BS107]
          Length = 373

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 234/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A   +++ +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDIVQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+    E    L  VATD
Sbjct: 120 MASSEYHSNFSANAAVLQRLFDKSKFAISTEETRYYLNGVYMHVADGVEGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + ++      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDANLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDASEFARAVDRVATVSSERSRAVKLQLDEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYRDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R    +S         A YV+MPMR+
Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373


>gi|167644134|ref|YP_001681797.1| DNA polymerase III subunit beta [Caulobacter sp. K31]
 gi|167346564|gb|ABZ69299.1| DNA polymerase III, beta subunit [Caulobacter sp. K31]
          Length = 372

 Score =  359 bits (923), Expect = 3e-97,   Method: Composition-based stats.
 Identities = 134/387 (34%), Positives = 213/387 (55%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER+ +L+ LGH   ++ER+NTIP+  ++LL A+   L   A+  ++EI     A 
Sbjct: 1   MKLTIERAALLKALGHVQSVVERRNTIPILSNILLSADRDTLSFSATDLDMEIIDEGLAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D+ G IT  AH LY+IVRKL DG+ +S     +    + I  G S F L   P  +FP 
Sbjct: 61  IDIPGQITAPAHTLYEIVRKLPDGSDVSLSFSGDD-PRLVIQAGRSRFNLPVLPAGDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
              +       + ++ L  L+++T FA++TEE RYYLNG++ H   +  ++KL AVATDG
Sbjct: 120 MSSDGLSGRISVDTNELIRLIDKTRFAISTEETRYYLNGLYLHTVNDGGEVKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE+      A +P IIVPRK + E  R++ S    V + +S  ++       +++
Sbjct: 180 HRLALAEMAAPEGAAGLPGIIVPRKTIQEARRLMESAGEQVDLQISAQKVRFEFGRAALT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP  N K L ++     +AVDRV+ +S+ + ++VKL++   ++ +T
Sbjct: 240 SKVIDGAFPDYLRVIPRDNAKILTLDNDLFAKAVDRVATISAEKSRSVKLAVEPGRITLT 299

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E + V Y+    +I FN +YLL++   I           FR     S   
Sbjct: 300 VRNMEAGQAVEEVEVDYDGEAFEIGFNARYLLDVCGQIGGPI-----AEFRFADPASPTL 354

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +                  YVLMP+R+
Sbjct: 355 VVDPTDPGVK---------YVLMPLRV 372


>gi|163802134|ref|ZP_02196029.1| DNA polymerase III subunit beta [Vibrio sp. AND4]
 gi|159173939|gb|EDP58749.1| DNA polymerase III subunit beta [Vibrio sp. AND4]
          Length = 366

 Score =  359 bits (921), Expect = 5e-97,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 220/386 (56%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +    S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSSRSRFSLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  S L++LVE+T F+MA +++RYYLNG+ F I+   L+  +VATDGH
Sbjct: 118 NIEDWQSEVEVSLTQSDLRSLVEKTQFSMANQDVRYYLNGMLFEIDGSTLR--SVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AV++  + A  A+   IIVPRK + E+++++ + +  V + +  S +   + +   + 
Sbjct: 176 RMAVSQTQLGADFAQ-KQIIVPRKGIQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P S +K L   C  LRQA  R +I+S+ + + V+++L+  ++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQSTNKTLETGCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V +    ++I FN  Y+L++++ +  D+     V   +  +N+S  I
Sbjct: 295 NNPEQEEAEEILDVTFEGDAIEIGFNVSYVLDVLNTLRCDK-----VRVSMSDANASALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         A YV+MP+R+
Sbjct: 350 ENADDDS---------AMYVVMPIRL 366


>gi|68249577|ref|YP_248689.1| DNA polymerase III subunit beta [Haemophilus influenzae 86-028NP]
 gi|68057776|gb|AAX88029.1| DNA polymerase III, beta chain [Haemophilus influenzae 86-028NP]
          Length = 366

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKTVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|259417199|ref|ZP_05741118.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B]
 gi|259346105|gb|EEW57919.1| DNA polymerase III, beta subunit [Silicibacter sp. TrichCH4B]
          Length = 373

 Score =  359 bits (921), Expect = 6e-97,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLNADAATG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
               EY  +F   ++VL+ L +++ FA++TEE RYYLNG++ H+         L  VATD
Sbjct: 120 MATSEYHSNFTANAAVLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y++  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R    +S         A YV+MPMR+
Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373


>gi|170724372|ref|YP_001758398.1| DNA polymerase III subunit beta [Shewanella woodyi ATCC 51908]
 gi|169809719|gb|ACA84303.1| DNA polymerase III, beta subunit [Shewanella woodyi ATCC 51908]
          Length = 366

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R  +L+ L      +ER++ +P+  ++L++ +   L++  +  E+E+ G +   
Sbjct: 1   MKFSIDRDALLKPLQLVTGAVERRHNLPILANLLVEVSGHSLKMTGTDLEVELVGQVQLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T+ A    DIV+ L D  ++   ++      + +  G S F L + P  E+P
Sbjct: 61  GEVQEGRTTIPAKKFLDIVKSLPDQVELKIEQQE---NRLLLRSGRSRFTLATLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +    F +    LK+L++ T F+MA +++RYYLNG+        L+  A+ATDGH
Sbjct: 118 NVEAFQAEIEFTINQGTLKSLIDATQFSMANQDVRYYLNGLLLETEGNVLR--AIATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   I   + +   +IVPRK V E+ R+   ++  + +++ ++ I     S   + 
Sbjct: 176 RLALSHRQIQDTLPE-KQVIVPRKGVVELQRLFEGEELDITIAIGDNAIRATTASAVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  +  +L+QA+ R SI+S+ + + V++ L  + + +T 
Sbjct: 235 KLVDGRFPDYRRVLPKGGDKVVIASRNHLKQALLRASILSNEKFRGVRVQLEENLIKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y   P++I FN  YLL++++N+ S     D+V   L   NSS  I
Sbjct: 295 NNPEQEEAEEILDVEYENTPLEIGFNVSYLLDVLNNLPS-----DDVRITLIDGNSSALI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         ++ YV+MPMR+
Sbjct: 350 ENHIEE---------DSMYVVMPMRL 366


>gi|301154704|emb|CBW14167.1| DNA polymerase III, beta subunit [Haemophilus parainfluenzae T3T1]
          Length = 366

 Score =  358 bits (920), Expect = 7e-97,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D  +I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEED---RAIVESGRSKFNLTTLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +++  Q  +  S+I+PRK V E+ R+L S D   ++ +  + + +++  +  + 
Sbjct: 176 RLAVCTIELD-QDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +  N   L+QA  R SI+S+ R+++V+L+LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +        +V  RL  ++SS  I
Sbjct: 295 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKCQ-----QVRIRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 350 ENSED---------ASAEYVIMPMRL 366


>gi|325577774|ref|ZP_08148049.1| DNA-directed DNA polymerase III beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
 gi|325160519|gb|EGC72645.1| DNA-directed DNA polymerase III beta subunit [Haemophilus
           parainfluenzae ATCC 33392]
          Length = 367

 Score =  358 bits (919), Expect = 8e-97,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 2   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSYTQLS 61

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D  +I+   E +      +  G S F L + P  E+P
Sbjct: 62  SSTADGAFTIPAKKFLDICRTLSDEFEITVTFEED---RAIVESGRSKFNLTTLPAEEYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 119 NLTDWQSEVDFALPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +++  Q  +  S+I+PRK V E+ R+L S D   ++ +  + + +++  +  + 
Sbjct: 177 RLAVCTIELD-QDLQTHSVILPRKGVLELNRLLESSDELARLQIGTNNLRIHLNHIVFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + +  N   L+QA  R SI+S+ R+++V+L+LS ++L +T 
Sbjct: 236 KLIDGRFPDYRRVLPRNATRIVEGNWETLKQAFVRASILSNERVRSVRLNLSENQLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +        +V  RL  ++SS  I
Sbjct: 296 SNPEHEVAEEIVDVNYQGEEMEVGFNVTYILDVLNALKCQ-----QVRIRLTDASSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 351 ENSED---------ASAEYVIMPMRL 367


>gi|121998016|ref|YP_001002803.1| DNA polymerase III subunit beta [Halorhodospira halophila SL1]
 gi|121589421|gb|ABM62001.1| DNA polymerase III, beta subunit [Halorhodospira halophila SL1]
          Length = 366

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 207/385 (53%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V+R  +L  L     ++ER+ T+PV  ++ ++A    L++ A+  E+E+   + A+
Sbjct: 1   MRFEVQREPLLAALQSIVGVVERRQTLPVLGNIRVEARSQQLQLTATDLEVELVAYLEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A    DI R L +GA IS     +      +    S F L + P  EFP 
Sbjct: 61  TKDEGVITLPARKWLDICRNLPEGASISIEANQD---RATLRAASSRFSLATLPADEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +      + E+    L+ L+ERTHF+MA  ++RYYLNG+   +     +  AVATDGHR
Sbjct: 118 VESIGDTEAVEIPRGELRRLIERTHFSMAQHDVRYYLNGLLLELTGSGAR--AVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AE D   Q+A+   +IVPRK V E+LR+L   D    +    + + + ++S+ ++ +
Sbjct: 176 LALAESDSPVQVAQPRQVIVPRKGVQELLRLLDDADEPATLEFGTNHVRVTLQSVRLTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y  VIP   DK + ++   LRQA+ RV+I+S+ + + ++ ++  D L +   
Sbjct: 236 LIDGVFPDYNRVIPQDGDKHVLIDRQYLRQALTRVAILSNEKYRGIRFAVEGDTLRIGSH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + + Y    +++ FN  YLL+ +  + +     + V   L  ++SS  IR
Sbjct: 296 NPEQEEAEEELGIEYGGEAVELGFNANYLLDALGALDT-----ERVQVTLTDASSSGLIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  D         NA YV+MPMR+
Sbjct: 351 AEGSD---------NARYVVMPMRL 366


>gi|262189752|ref|ZP_06048107.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93]
 gi|262034366|gb|EEY52751.1| DNA polymerase III beta subunit [Vibrio cholerae CT 5369-93]
          Length = 353

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 111/359 (30%), Positives = 200/359 (55%), Gaps = 12/359 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GSITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGSITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQK-QIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V+++L+ +++ +T 
Sbjct: 235 KLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRVNLADNEMRITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V   +  +     
Sbjct: 295 NNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRVSMSDAQRQCL 348


>gi|99079843|ref|YP_611997.1| DNA polymerase III subunit beta [Ruegeria sp. TM1040]
 gi|99036123|gb|ABF62735.1| DNA polymerase III, beta subunit [Ruegeria sp. TM1040]
          Length = 373

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 146/388 (37%), Positives = 233/388 (60%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER+ +L+ +  A  ++ER+NTIP+  +VL++A    +  +A+  +IE+    PA 
Sbjct: 1   MKISIERATLLKAVAQAQSVVERRNTIPILANVLIEAEGSDVMFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLDADAASG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H+         L  VATD
Sbjct: 120 MATSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVATGESGGKALRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  + D+      MP +IVPRK VGE+ ++L   D  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDADLPMGAEDMPGVIVPRKTVGELRKLLDEDDMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+ +   +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPVGNTRRLEVDASEFAKAVDRVATVSSERSRAVKLQLDEDRLVL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y++  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYSDERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R    +S         A YV+MPMR+
Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373


>gi|148980123|ref|ZP_01815903.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3]
 gi|145961424|gb|EDK26730.1| DNA polymerase III subunit beta [Vibrionales bacterium SWAT-3]
          Length = 356

 Score =  358 bits (919), Expect = 9e-97,   Method: Composition-based stats.
 Identities = 111/376 (29%), Positives = 206/376 (54%), Gaps = 21/376 (5%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITV 69
           ++ L      +  + T+P+  ++L++  D +L + A+  E+E+   +    D   GSITV
Sbjct: 1   MKPLQQVSGALGGRPTLPILGNLLIKVEDNVLSMTATDLEVELISRVTLEGDFEAGSITV 60

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
            +    DI R L D + I+   +   G  V +  G S F L + P ++FP+ ++      
Sbjct: 61  PSRKFLDICRGLPDSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIEDWSSEVE 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             +  + L+ L+E+T F+MA +++RYYLNG+ F I  E   L +VATDGHR+AV++  + 
Sbjct: 118 VSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--EGSTLRSVATDGHRMAVSQAQLG 175

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
           A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + +L+DG FP+Y
Sbjct: 176 ADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLVDGRFPDY 234

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309
           + V+P +  K L   C  LR A  R +I+S+ + + V+++L+  ++ +T +NP+  +A E
Sbjct: 235 RRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLADSEMRITANNPEQEEAEE 294

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
            ++V +    ++I FN  Y+L++++ +       ++V   +  +N+S  I     DS   
Sbjct: 295 MLDVTFEGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENAQDDS--- 346

Query: 370 KDNKVNAFYVLMPMRI 385
                 A YV+MP+R+
Sbjct: 347 ------AMYVVMPIRL 356


>gi|113460283|ref|YP_718342.1| DNA polymerase III subunit beta [Haemophilus somnus 129PT]
 gi|170718298|ref|YP_001783357.1| DNA polymerase III subunit beta [Haemophilus somnus 2336]
 gi|112822326|gb|ABI24415.1| DNA polymerase III, beta subunit [Haemophilus somnus 129PT]
 gi|168826427|gb|ACA31798.1| DNA polymerase III, beta subunit [Haemophilus somnus 2336]
          Length = 366

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 117/386 (30%), Positives = 203/386 (52%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  V R  +L+ L   C ++  +   P+  +VLLQ    +L I  +  E+E++      
Sbjct: 1   MQFIVSREHLLKPLQQVCGVLSSRPNFPILNNVLLQIEGNVLRITGTDLEVELSTQAQLI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS T+ A    DI R   D A+I+   E E      +  G S F L + P  E+P
Sbjct: 61  QASQDGSYTIPAKKFLDICRSFPDEAEITVIFEEE---RALVRSGRSKFNLTALPADEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLADWQSEVDFYLPQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q     ++I+PRK + E++R+L + + +  V +  + + +++ S+  + 
Sbjct: 176 RLAVCTIPLE-QDLHTHAVILPRKGILELMRLLENSEHAAHVQIGTNNLRIDLGSIIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +    +  N   L+QA  R++I+SS +++ V+L L+S++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATHIMEGNWELLKQAFARMAILSSDKVKTVRLQLTSNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V YN   M++ FN  Y+L++++ +        +V      ++SS  +
Sbjct: 295 TNPEQEVAEEILDVIYNGADMEVGFNVSYILDVLNALKCQ-----QVRLCFTDASSSCLL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D +S           YV+MPMR+
Sbjct: 350 EDADDESAE---------YVVMPMRL 366


>gi|119503574|ref|ZP_01625657.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2080]
 gi|119460636|gb|EAW41728.1| DNA polymerase III subunit beta [marine gamma proteobacterium
           HTCC2080]
          Length = 365

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 122/386 (31%), Positives = 205/386 (53%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +++ L     ++ER+ T+P+  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MKFSISREALIKPLNLVAGVVERRQTLPILSNVLLNLEGTQLSLTGTDLEVELIGRVEVE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G ITV A  L DI + L D +QI F  +     +  +  G   F L + P +EFP
Sbjct: 61  AGGVDGDITVPARKLVDICKSLPDSSQIEFSVD---SGKAMVKAGRGRFTLSTLPATEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E     + E+A SV+K L++RT FAMA +++RYYLNG+   +     +L  VATDGH
Sbjct: 118 SVDESAGDQTLEVAQSVVKRLIDRTAFAMAQQDVRYYLNGMLLELKAG--RLRMVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+   +  A      +II+PRK V E+ R+L   D S+++ +  + I    +  + + 
Sbjct: 176 RLALCTAN-EAVSTGDAAIIIPRKGVLELSRLL-DTDESIRLVIGSNHIRAANQQFTFTS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP Y+ V+P S DK +      LRQA  R +I+S+ + + V+L LS+D L +T 
Sbjct: 234 KLVDGKFPEYERVLPKSADKTVIGQRLELRQAFTRTAILSNEKYRGVRLKLSADTLDITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    +++ FN  YLL+++  +  D++                  
Sbjct: 294 NNPEQEQAEEVVAVEYQGEELEVGFNVSYLLDVLSVLDGDQIRLSL-------------- 339

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +   + ++ ++ YV+MPMR+
Sbjct: 340 SDSASSALLEEADEGDSLYVVMPMRL 365


>gi|86139416|ref|ZP_01057985.1| DNA polymerase III subunit beta [Roseobacter sp. MED193]
 gi|85823919|gb|EAQ44125.1| DNA polymerase III subunit beta [Roseobacter sp. MED193]
          Length = 373

 Score =  358 bits (919), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 145/388 (37%), Positives = 232/388 (59%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ER  +L+ +  A  ++ER+NTIP+  +VL++A   + + +A+  +IE+    PA 
Sbjct: 1   MKISIERGTLLKAVAQAQSVVERRNTIPILANVLIEAEGDVAQFRATDLDIEVVDKAPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TV+A  L++IVRKL DGA ++   +   G  + +  G SNF L + P  +FP 
Sbjct: 61  VERAGATTVAATTLHEIVRKLPDGALVTLTADAATG-RLTVEAGRSNFSLATLPREDFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN---EEDLKLCAVATD 177
               EY  +F   +++L+ L +++ FA++TEE RYYLNG++ H++   E    L  VATD
Sbjct: 120 MASSEYHSNFTANAAMLRRLFDKSKFAISTEETRYYLNGVYMHVSDAAEGGKVLRCVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +  +      MP +IVPRK VGE+ ++L   +  + VS+SE+++     ++++
Sbjct: 180 GHRLARIDASLPVGAEDMPGVIVPRKTVGEMRKLLDDDEMDIAVSVSETKVRFATPNITL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDG FP+Y  VIP  N + L V+     +AVDRV+ +SS R +AVKL L  D+L +
Sbjct: 240 TSKVIDGTFPDYTRVIPAGNTRRLEVDADEFARAVDRVATVSSERSRAVKLQLEEDRLIL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+ PD G A E + V Y +  ++I FN KYLLEI     +++V  +  VF  +SS    
Sbjct: 300 SVNAPDSGAAEEELAVAYADERLEIGFNAKYLLEI-----ANQVDRENAVFMFNSSGDPT 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R    +S         A YV+MPMR+
Sbjct: 355 LMREGSDES---------AVYVVMPMRV 373


>gi|254435596|ref|ZP_05049103.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27]
 gi|207088707|gb|EDZ65979.1| DNA polymerase III, beta subunit [Nitrosococcus oceani AFC27]
          Length = 377

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R +I+  L   C ++ER++T+P+  +VLL   D  L + A+  EIEI  A+   
Sbjct: 11  MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 70

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G +TVSA    +I R L  G+ +    +     +  I  G S F L + P  +FPS
Sbjct: 71  SSEEGKVTVSARKFLEICRALPSGSALEAQYKE---GQFYIHSGRSRFTLSTLPAEDFPS 127

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + V   EL  + LK L+ RT F MA +++RYYLNG+   + EE   + AVATDGHR
Sbjct: 128 IDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEES--IHAVATDGHR 185

Query: 181 LAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+A +     Q       I+PRKA+ E++R+L      V++    +++    + LS S 
Sbjct: 186 LALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFST 245

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+++ + + V L LS  KL   V
Sbjct: 246 KLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIV 305

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G A E +++ Y    ++I FN  YL+++++ I +      EV     +++SS  I
Sbjct: 306 TNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTK-----EVRLTFTNASSSCLI 360

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 361 TPIDA---------SDSKYVVMPMRL 377



 Score = 37.1 bits (85), Expect = 4.6,   Method: Composition-based stats.
 Identities = 30/182 (16%), Positives = 68/182 (37%), Gaps = 11/182 (6%)

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            KE++ +  F +    +   +      +        L+ +   + +  L L  +ATD   
Sbjct: 4   LKEKKQLMRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSL--MATD--L 59

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-V 239
                  +    ++   + V  +   EI R L S  S+++    E + +++      +  
Sbjct: 60  EIEIRTALKVLSSEEGKVTVSARKFLEICRALPSG-SALEAQYKEGQFYIHSGRSRFTLS 118

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L   +FP+  ++       EL +    L+Q + R     +   Q V+  L+   L +T 
Sbjct: 119 TLPAEDFPSIDSI---DAVAELELTQAELKQLLHRTVFCMA--HQDVRYYLNGLLLELTE 173

Query: 300 DN 301
           ++
Sbjct: 174 ES 175


>gi|152977690|ref|YP_001343319.1| DNA polymerase III subunit beta [Actinobacillus succinogenes 130Z]
 gi|150839413|gb|ABR73384.1| DNA polymerase III, beta subunit [Actinobacillus succinogenes 130Z]
          Length = 366

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 112/386 (29%), Positives = 205/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R ++L+ L   C ++  +  +PV  +VLLQ     L I  +  E+E++     +
Sbjct: 1   MQFIVSRENLLKPLQQVCGVLSSRPNVPVLNNVLLQIEGDRLTITGTDLEVELSTQAQLN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ T+ A    DI R L + A I+   E +      +    + F L +FP  E+P+
Sbjct: 61  SHGEGTFTIPAKKFLDICRSLPEDAVITVDFEQD---RAIVRSSRTKFNLATFPAEEYPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F ++ + ++ L+E T F+MA  + RY+LNG+ F      L+   VATDGHR
Sbjct: 118 LTDWQSEVDFTVSQATMRRLIEATQFSMANNDARYFLNGMKFETEGNLLR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV  +++  Q  +  S+I+PRK V E+ R+L  + +   +V +  +   + + S+  + 
Sbjct: 176 LAVCTIELE-QDLQNHSVILPRKGVLELARLLDATSEQPARVQIGTNNFRVELGSVVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P + ++ L  +  NL+Q+  R SI+SS +++ V+L L+ ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNANRILESDWENLKQSFVRASILSSEKVRTVRLELNQNQLTITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +  E ++V Y   P++I FN  Y+L++++ +         V  R   ++SS  I
Sbjct: 295 KNPEQEEVEEILDVSYQSEPIEIGFNVSYVLDVLNALKCQ-----RVRVRFTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + ++           YV+MPM++
Sbjct: 350 EDCEDNTAE---------YVIMPMKL 366


>gi|145630088|ref|ZP_01785870.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
 gi|144984369|gb|EDJ91792.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
          Length = 366

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R  +L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISREHLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|145632378|ref|ZP_01788113.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655]
 gi|145637298|ref|ZP_01792959.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH]
 gi|144987285|gb|EDJ93815.1| DNA polymerase III subunit beta [Haemophilus influenzae 3655]
 gi|145269550|gb|EDK09492.1| DNA polymerase III subunit beta [Haemophilus influenzae PittHH]
          Length = 366

 Score =  358 bits (918), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|260912770|ref|ZP_05919256.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis
           ATCC 43325]
 gi|260633148|gb|EEX51313.1| DNA-directed DNA polymerase III beta subunit [Pasteurella dagmatis
           ATCC 43325]
          Length = 366

 Score =  357 bits (917), Expect = 1e-96,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPA 59
           M+  V R ++L+ L   C ++  +  IPV  +VLLQ N   L I  +  E+E++  +   
Sbjct: 1   MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQINGDCLVITGTDLEVELSTQSALL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S DV G+ T+ A    DI R L + A+IS   E +      +  G S F L + P  E+P
Sbjct: 61  STDVKGNFTIPAKKFLDICRSLPENAEISVSFEED---RAIVKSGRSKFNLSTLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F +  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTIEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E++R+L + D   ++ +  + + + + ++  + 
Sbjct: 176 RLAVCTIALE-QDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIELGNIIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + L  +   L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEADWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +         V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYIGEEMEVGFNVSYILDVLNALKCQ-----RVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +           +A YV+MPMR+
Sbjct: 350 EDCED---------ASAEYVIMPMRL 366


>gi|77163563|ref|YP_342088.1| DNA-directed DNA polymerase [Nitrosococcus oceani ATCC 19707]
 gi|76881877|gb|ABA56558.1| DNA polymerase III, beta subunit [Nitrosococcus oceani ATCC 19707]
          Length = 367

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 207/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R +I+  L   C ++ER++T+P+  +VLL   D  L + A+  EIEI  A+   
Sbjct: 1   MRFSIKREEIVRHLVTVCGVVERRHTLPILSNVLLSVKDSQLSLMATDLEIEIRTALKVL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G +TVSA    +I R L  G+ +    +     +  I  G S F L + P  +FPS
Sbjct: 61  SSEEGKVTVSARKFLEICRALPSGSALEAQYKE---GQFYIHSGRSRFTLSTLPAEDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + V   EL  + LK L+ RT F MA +++RYYLNG+   + EE   + AVATDGHR
Sbjct: 118 IDSIDAVAELELTQAELKQLLHRTVFCMAHQDVRYYLNGLLLELTEES--IHAVATDGHR 175

Query: 181 LAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+A +     Q       I+PRKA+ E++R+L      V++    +++    + LS S 
Sbjct: 176 LALASLAKGADQEGTEIQSIIPRKAILELVRLLEESQEPVRLKFGTNQMRAEFQGLSFST 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+++ + + V L LS  KL   V
Sbjct: 236 KLIDGQFPDYKRVIPVGCEKQFVADRERFKQALVRVNILTNDKYRGVHLHLSDLKLQAIV 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G A E +++ Y    ++I FN  YL+++++ I +      EV     +++SS  I
Sbjct: 296 TNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLNIIDTK-----EVRLTFTNASSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           ++ YV+MPMR+
Sbjct: 351 TPIDA---------SDSKYVVMPMRL 367


>gi|15603025|ref|NP_246097.1| DNA polymerase III subunit beta [Pasteurella multocida subsp.
           multocida str. Pm70]
 gi|12721508|gb|AAK03244.1| DnaN [Pasteurella multocida subsp. multocida str. Pm70]
          Length = 366

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  V R ++L+ L   C ++  +  IPV  +VLLQ     L I  +  E+E++      
Sbjct: 1   MQFIVSRENLLKPLQQVCGVLSSRPNIPVLNNVLLQIRGERLVITGTDLEVELSTETALL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             DV GS T+ A    DI R L + A+IS   E +      +  G S F L + P  E+P
Sbjct: 61  RTDVQGSFTIPAKKFLDICRSLPEEAEISVSFEED---RAIVKSGRSKFNLSTLPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  S L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFTLEQSTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E++R+L + D   ++ +  + + +++ ++  + 
Sbjct: 176 RLAVCTIALE-QDLQTHSVILPRKGVLELVRLLENTDLPARLQIGTNNLRIDLGNIIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  + L      L+QA  R +I+S+ R ++V+L LS ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATRILEAEWDVLKQAFVRAAILSNERFRSVRLQLSENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+   A E ++V Y    M++ FN  Y+L++++ +         V  RL  ++SS  I
Sbjct: 295 TNPEQEVAEEIIDVSYVGEEMEVGFNVSYILDVLNALKCQ-----RVRMRLTDASSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D           +A YV+MPMR+
Sbjct: 350 EDCDD---------ASAEYVIMPMRL 366


>gi|304309654|ref|YP_003809252.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma
           proteobacterium HdN1]
 gi|301795387|emb|CBL43585.1| DNA polymerase sliding clamp subunit (PcnA homolog) [gamma
           proteobacterium HdN1]
          Length = 367

 Score =  357 bits (917), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 203/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  IL+ L     ++ER+ T P+  ++LL  +   L +  +  E+E+   I   
Sbjct: 1   MKFKVIREGILKPLQQLAGLVERRQTKPILANILLVLDGNALTLTGTDTEVELRARIQLG 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T+ A  L DI + L +GA++    +++   +  +  G S F L + P  +FP
Sbjct: 61  EEYPFGRATLPAKKLLDICKSLPEGAELLIEADDQ---KALLRSGRSKFSLVALPPDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++ ++   F +    L+ L+E+T FAMA +++R+YLNG+   ++E +L+  AVATDGH
Sbjct: 118 DLEDGQFEVQFSIQQRYLRELIEKTGFAMAQQDVRFYLNGMLLEVSENNLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ + DI+ Q A +   +VPRK + EI ++  S D  + +SLS + +      L  + 
Sbjct: 176 RLALGDRDILWQGAGIRQAVVPRKGILEIPKLFGSDDGELLISLSGNHLRAETADLRFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+D ++P Y  V+P   ++ +  +   LRQ + RV I+S+ + + V+L+     L    
Sbjct: 236 KLLDAKYPEYGRVLPKPGERYIVADRDALRQCLLRVGILSNEKFRGVRLTFQCGVLVARA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NP+  +A ES+ V YN    +I FN  YLL+++  + S     + V   L  +N++  I
Sbjct: 296 SNPEQEEAEESVVVDYNGADTEIAFNIGYLLDVLGVVKS-----ESVSISLADANNTALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R    D            YV+MPMRI
Sbjct: 351 RETVDD---------KTLYVVMPMRI 367


>gi|145634168|ref|ZP_01789879.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA]
 gi|145268612|gb|EDK08605.1| DNA polymerase III subunit beta [Haemophilus influenzae PittAA]
          Length = 366

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LS   ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSFKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|229846050|ref|ZP_04466162.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1]
 gi|229811054|gb|EEP46771.1| DNA polymerase III subunit beta [Haemophilus influenzae 7P49H1]
          Length = 366

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|301169718|emb|CBW29319.1| DNA polymerase III, beta subunit [Haemophilus influenzae 10810]
          Length = 366

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|256821230|ref|YP_003145193.1| DNA polymerase III subunit beta [Kangiella koreensis DSM 16069]
 gi|256794769|gb|ACV25425.1| DNA polymerase III, beta subunit [Kangiella koreensis DSM 16069]
          Length = 367

 Score =  357 bits (916), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 203/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R  +L  L      +E++ T+PV  +VL+  +D  L + A+  E+E+   +   
Sbjct: 1   MRFTISRDQLLAPLQLVSGAVEKRQTLPVLSNVLMVVDDSKLSLTATDLEVELKAQVDLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A  L DIVR L DG  +   K  +  T + +    S F L +   +EFP
Sbjct: 61  GEFEPGEITVPARKLLDIVRSLGDGENV---KIEQSETRLKVITPSSRFSLSTMSANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E   + S EL   VLK+L+E+T FAMA +++RYYLNG+ F  + +  KL  VATDGH
Sbjct: 118 NLDETVSLASLELTQDVLKSLIEKTQFAMAQQDVRYYLNGMLFEFDND--KLTTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++            S I+PRK V E+ R+L   D ++ ++L  + I +     S + 
Sbjct: 176 RLALSRAKASIDADDKISAIIPRKGVTELARLLEHSDDNITLNLGSNHIKVIGPDYSFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP Y+ V+P + DK +  +    ++++ R SI+ + + + V+  L+++++ +  
Sbjct: 236 KLVDGRFPEYEKVLPRNGDKIVIADRELFKESLSRASILCNEKFRGVRFMLTNEQVRLHA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A     V Y    ++I FN  Y++++++ I +      +V      +NSS  I
Sbjct: 296 NNPEQEEAEVEFGVDYQGSDLEIGFNVSYMIDVMNTIKT-----PQVKLTFIDANSSTLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D            + YV+MPMR+
Sbjct: 351 EEVDGGE---------SVYVVMPMRL 367


>gi|315497053|ref|YP_004085857.1| DNA polymerase iii, beta subunit [Asticcacaulis excentricus CB 48]
 gi|315415065|gb|ADU11706.1| DNA polymerase III, beta subunit [Asticcacaulis excentricus CB 48]
          Length = 373

 Score =  356 bits (915), Expect = 2e-96,   Method: Composition-based stats.
 Identities = 133/387 (34%), Positives = 219/387 (56%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +ER  +L+ LGH   ++ER+NTIP+  +VLL A    +   A+  ++EI  +  A 
Sbjct: 1   MQLIIERGALLKALGHVQNVVERRNTIPILSNVLLSAEGSQVSFSATDLDMEIVDSAEAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G IT  AH LY+IVRKL DGA +    +      + +  G S F L   P  +FP 
Sbjct: 61  VAVPGQITAPAHTLYEIVRKLPDGADVELRYQAGDDPRLTVQAGRSRFALPVLPAGDFPV 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--NEEDLKLCAVATDG 178
              +    ++ L    LK L+++T FA++TEE RYYLNG+F H    +    L AVATDG
Sbjct: 121 MSGDHDGTTYALLKEDLKRLIDKTRFAVSTEETRYYLNGLFLHTLTEDGSGYLRAVATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+AE+           +I+PRK + +  R+L      V++++S ++I  N  + +++
Sbjct: 181 HRLALAEMPAPDGSMGSAGVIIPRKTIDQARRLLDDGTGYVELTVSPAKIRFNFGTAALT 240

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y  VIP +NDK +R++   L +AVDRVS +S+ + ++VK+++   +L +T
Sbjct: 241 SKIIDGSFPDYGRVIPKNNDKLMRIDTGILSRAVDRVSTISAEKSRSVKMAIEPGRLTLT 300

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V N + G+A+E   + Y+   ++I FN +Y+L+++  I+      ++V  RL+ + S   
Sbjct: 301 VRNIEAGQAVEEAEIDYDSDSLEIGFNARYILDVMGQIAG-----EQVELRLNDAASPTL 355

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +                  YVLMP+R+
Sbjct: 356 VLDTADQGVQ---------YVLMPLRV 373


>gi|217968467|ref|YP_002353701.1| DNA polymerase III subunit beta [Thauera sp. MZ1T]
 gi|217505794|gb|ACK52805.1| DNA polymerase III, beta subunit [Thauera sp. MZ1T]
          Length = 369

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 200/385 (51%), Gaps = 21/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +T  R  +L  L     I+E+++T+P+  +VL++ +   L + A+  EI+I       + 
Sbjct: 4   LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHADQLTMLATDIEIQIRTTTGGHIG 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               SITV A  L DI+R L D A+IS   +++    + +  G S F LQ+ P +++P  
Sbjct: 64  GEDASITVGARKLQDILRALPDSAEISLTLDDK---RLTVKAGRSRFQLQTLPAADYPRL 120

Query: 122 -KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      +     K  + +  +AMA ++IRYYLNG+    +  +L++  VATDGHR
Sbjct: 121 NPPTDAAAHLSIGQRTFKRQLAQVAYAMAQQDIRYYLNGLLLIADGGELRM--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D+ A IA     I+PRK V E+ R L+  D  +++ L+ ++       + +  +
Sbjct: 179 LAYAASDLEAPIATRTEAILPRKTVLELARQLADSDDPLEILLAGNQAVFRFGPIELVTK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ VIP ++ K +      L  A+ R +I+++ + + V++ L    L +   
Sbjct: 239 LIDGKFPDYERVIPTAHPKLIHFARQPLLSALQRAAILTNEKFRGVRMVLEDGVLRIAST 298

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ + + Y    +DI FN  YLL++++N+SS+ V       R +  NSS  I 
Sbjct: 299 NAEQEEAMDELEIDYQGDKLDIGFNVTYLLDVLNNLSSETVDW-----RFNDGNSSALIT 353

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D            YV+MPMRI
Sbjct: 354 LPGND---------KFKYVVMPMRI 369


>gi|296285052|ref|ZP_06863050.1| DNA polymerase III subunit beta [Citromicrobium bathyomarinum
           JL354]
          Length = 375

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 156/392 (39%), Positives = 229/392 (58%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEI-TGAIP 58
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL+ A+  G +++ A+  ++++      
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDADAGGGVKVMATDLDLQVVETMTA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+ITVSAHLL+DI RKL DG+Q+S    +     + +  G S F L + P  +F
Sbjct: 61  ASVESAGAITVSAHLLFDIARKLPDGSQVSLETAD---NRMVVKAGRSRFQLPTLPRDDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATD 177
           P   E E   SFEL +  L  +++RT FA++TEE RYYLNGIF H+++E    L A ATD
Sbjct: 118 PVIVEGELPTSFELPARELAEMIDRTRFAISTEETRYYLNGIFLHVSDEARPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234
           GHRLA   +D       MP +IVPRKAVGE+ ++L    DS+V++ LS S+I   +    
Sbjct: 178 GHRLARYTLDRPEGAEGMPDVIVPRKAVGELRKLLEEALDSNVQIDLSASKIRFALGGEG 237

Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + ++ +LIDG FP+Y  VIP  NDK LR++     Q VDRV+ +++ + +AVK+ L  D
Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLRLDPKAFFQGVDRVATIATEKTRAVKMGLDED 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           K+ ++V +PD G A E +   Y     +I FN  YL +I+  I S     D V   L  +
Sbjct: 298 KVTLSVTSPDNGTAAEEIAAEYKAEGFEIGFNANYLKDILGQIDS-----DTVELHLADA 352

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR         +D    A YVLMPMR+
Sbjct: 353 GAPTLIR---------RDENSPALYVLMPMRV 375


>gi|220933195|ref|YP_002512094.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7]
 gi|219994505|gb|ACL71107.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. HL-EbGR7]
          Length = 366

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 202/385 (52%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R D+L+ L      +ER+ T+P+  +VL++A++  L +  +  E+E+       
Sbjct: 1   MRFSIQREDLLKPLQQVIGAVERRQTMPILANVLIKADEDRLSVTGTDLEVELVAEASEV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TV A  L DI R L D A +    E   G  V I+ G + F L + P ++FP+
Sbjct: 61  SASPGEATVPARKLLDICRALPDEASLEIQAE---GDRVLITSGRARFTLSALPAADFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        L    L++L+ RT FAMA +++RYYLNG+   + +  ++   VATDGHR
Sbjct: 118 LDEISSSKELTLTERELRHLILRTSFAMANQDVRYYLNGLMLEVGQNVIR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E++     A    +I+PRK V E+LR+L   D  V++ +  + I   +  L  + +
Sbjct: 176 LALCELNTTVDTASSQQVIIPRKGVQELLRLLEDSDEPVRLQIGANHIRATLPRLRFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y  VIP   D+ ++V    LR+A+ R SI+S+ + + ++L L    L +   
Sbjct: 236 LIDGRFPDYDRVIPKDGDQVMKVEREALRKALARASILSNEKYRGIRLVLGDGLLRIQAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A + +   Y    M+I FN  YLL++++ +  D +           +NSSV +R
Sbjct: 296 NPEQEEAEDEIEAQYTGTAMEIGFNVTYLLDVLNTVEGDVIEA-----TFKDANSSVLMR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                         +A YV+MPMR+
Sbjct: 351 DP---------GATDALYVVMPMRL 366


>gi|229843948|ref|ZP_04464089.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1]
 gi|229812942|gb|EEP48630.1| DNA polymerase III subunit beta [Haemophilus influenzae 6P18H1]
          Length = 366

 Score =  356 bits (915), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + +S           YV+MPMR+
Sbjct: 350 ENCEDNSSE---------YVIMPMRL 366


>gi|148828163|ref|YP_001292916.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG]
 gi|148719405|gb|ABR00533.1| DNA polymerase III subunit beta [Haemophilus influenzae PittGG]
          Length = 366

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|145640666|ref|ZP_01796249.1| DNA polymerase III subunit beta [Haemophilus influenzae R3021]
 gi|145274592|gb|EDK14455.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.4-21]
          Length = 366

 Score =  356 bits (914), Expect = 3e-96,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366


>gi|319897496|ref|YP_004135693.1| DNA polymerase iii, beta subunit [Haemophilus influenzae F3031]
 gi|317433002|emb|CBY81373.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3031]
          Length = 366

 Score =  356 bits (913), Expect = 4e-96,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 209/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDESEITVIFEQD---RALVQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  Q  +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISL-GQELQNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|90408443|ref|ZP_01216603.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3]
 gi|90310427|gb|EAS38552.1| Putative DNA polymerase III, beta chain [Psychromonas sp. CNPT3]
          Length = 368

 Score =  356 bits (913), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 123/387 (31%), Positives = 216/387 (55%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+ ++ R   L  L      +   +  +P+  ++L+Q  DG+L +  +  E+E+   I  
Sbjct: 1   MQFSISREAFLRPLQLVAGSVAGGRPALPIMANILIQIKDGILSLTGTDLEVELITQIHL 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                 G ITV A  L +I R L D  +I F  +++    V +  G S + L S P S+F
Sbjct: 61  ESPSEEGEITVPARKLLNICRGLSDPCEIKFQVKDD---RVTVRSGRSRYLLSSLPASDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  + +  F +A    K L+E T FAMA++++RYYLNG++F  + + L+  +VATDG
Sbjct: 118 PNIESWKSLAEFNVAQKEFKKLIEFTQFAMASQDVRYYLNGMYFEASGDSLR--SVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +   I +  S+IVPRK V E++++L ++  +V + + ++ +   I +   +
Sbjct: 176 HRLASCAIKLSTPIEEQ-SLIVPRKGVVELVKLLDNEQENVTIQIGKNNLRAIIGNFIFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ VIP + DKEL  +  +L+QA  R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLVDGRFPDYRRVIPRNGDKELIASRESLKQAFTRAAILSNEKFRGVRLTLSKNLLQIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E +++ Y    ++I FN  Y+L++++ + S++     +     SS  S  
Sbjct: 295 ANNPEREEAEEYIDIDYQASDLEIGFNVSYVLDVLNTLKSEK-----IKITFSSSAHSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D D         +A YVLMPMR+
Sbjct: 350 IESIDADD--------DALYVLMPMRL 368


>gi|85374293|ref|YP_458355.1| DNA polymerase III subunit beta [Erythrobacter litoralis HTCC2594]
 gi|84787376|gb|ABC63558.1| DNA polymerase III beta subunit [Erythrobacter litoralis HTCC2594]
          Length = 375

 Score =  355 bits (912), Expect = 5e-96,   Method: Composition-based stats.
 Identities = 156/392 (39%), Positives = 231/392 (58%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59
           MK T+ER+ +L  L H   ++ER+NTIP+  ++L++A DG  +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNILIEAGDGSAVKVMATDLDLQVVETMNA 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            SV+  GS TVSAHLL+DI RKL DG+Q+S    +     + I  G S F L + P+ +F
Sbjct: 61  ASVESSGSTTVSAHLLFDIARKLPDGSQVSLEVAD---NRMTIKAGRSRFQLPTLPKDDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATD 177
           P   E +   SFE+ +  L  L++RT FA++TEE RYYLNGIF H+++ED   L A ATD
Sbjct: 118 PVIVEGDLPTSFEIPAKTLAELIDRTRFAISTEETRYYLNGIFLHVSDEDTPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234
           GHRLA   +        MP +IVPRKAVGE+ ++L  + D +V V LS S+I   +    
Sbjct: 178 GHRLARFTLARPDGADGMPDVIVPRKAVGELRKLLEERMDGNVVVDLSASKIRFTLGGEG 237

Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              ++ +LIDG FP+Y  VIP  NDK L+V+  +  + VDRV+ +++ + +AVK+ L +D
Sbjct: 238 GTVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKSFFEGVDRVATIATEKTRAVKMGLDAD 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           K+ ++V +PD G A E +   Y     +I FN  YL +I+  I S     D V   L  +
Sbjct: 298 KVTLSVTSPDNGTASEELAAEYKSEGFEIGFNANYLKDILSQIDS-----DMVELHLADA 352

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR         KD    A YVLMPMR+
Sbjct: 353 GAPTLIR---------KDENSPALYVLMPMRV 375


>gi|303250481|ref|ZP_07336678.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307251523|ref|ZP_07533430.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307256023|ref|ZP_07537811.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
 gi|302650469|gb|EFL80628.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860987|gb|EFM92993.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306865445|gb|EFM97340.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 10 str. D13039]
          Length = 367

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 211/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L + A+  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTATDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E +      +    S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  +           YV+MPMR+
Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367


>gi|16272930|ref|NP_439155.1| DNA polymerase III subunit beta [Haemophilus influenzae Rd KW20]
 gi|260580083|ref|ZP_05847913.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW]
 gi|1169393|sp|P43744|DPO3B_HAEIN RecName: Full=DNA polymerase III subunit beta
 gi|1574022|gb|AAC22654.1| DNA polymerase III, beta subunit (dnaN) [Haemophilus influenzae Rd
           KW20]
 gi|260093367|gb|EEW77300.1| DNA polymerase III, beta subunit [Haemophilus influenzae RdAW]
          Length = 366

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDYRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFARASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|53729133|ref|ZP_00134099.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Actinobacillus pleuropneumoniae serovar 1 str. 4074]
 gi|126207490|ref|YP_001052715.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           L20]
 gi|165975459|ref|YP_001651052.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|190149271|ref|YP_001967796.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|307244803|ref|ZP_07526902.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|307249201|ref|ZP_07531198.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|307262582|ref|ZP_07544213.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
 gi|126096282|gb|ABN73110.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
 gi|165875560|gb|ABY68608.1| DNA polymerase III beta chain [Actinobacillus pleuropneumoniae
           serovar 3 str. JL03]
 gi|189914402|gb|ACE60654.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 7 str. AP76]
 gi|306854248|gb|EFM86454.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 1 str. 4074]
 gi|306858725|gb|EFM90784.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 4 str. M62]
 gi|306872080|gb|EFN03793.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 13 str. N273]
          Length = 367

 Score =  355 bits (912), Expect = 6e-96,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E +      +    S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  +           YV+MPMR+
Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367


>gi|307253757|ref|ZP_07535611.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|307258214|ref|ZP_07539957.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
 gi|306863241|gb|EFM95181.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 9 str. CVJ13261]
 gi|306867674|gb|EFM99519.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 11 str. 56153]
          Length = 367

 Score =  355 bits (912), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 209/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E +      +    S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S +  ++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRASMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  +           YV+MPMR+
Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367


>gi|145638186|ref|ZP_01793796.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII]
 gi|145272515|gb|EDK12422.1| DNA polymerase III subunit beta [Haemophilus influenzae PittII]
          Length = 366

 Score =  355 bits (911), Expect = 7e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|148826360|ref|YP_001291113.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE]
 gi|148716520|gb|ABQ98730.1| DNA polymerase III subunit beta [Haemophilus influenzae PittEE]
          Length = 366

 Score =  355 bits (911), Expect = 8e-96,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSHRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366


>gi|303251823|ref|ZP_07337994.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|307249124|ref|ZP_07531131.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
 gi|302649253|gb|EFL79438.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. 4226]
 gi|306854412|gb|EFM86608.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 2 str. S1536]
          Length = 367

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 211/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E +      +    S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA +++RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDVRYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  +           YV+MPMR+
Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367


>gi|332288918|ref|YP_004419770.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179]
 gi|330431814|gb|AEC16873.1| DNA polymerase III subunit beta [Gallibacterium anatis UMN179]
          Length = 366

 Score =  354 bits (910), Expect = 9e-96,   Method: Composition-based stats.
 Identities = 120/386 (31%), Positives = 212/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R ++L+ L   C ++  + ++PV  ++L+Q +   L +  S  E+E++  +   
Sbjct: 1   MQFIVARENLLKPLQQVCGVLNNRPSLPVLNNILVQIDGDRLTLTGSDLEVELSTFVQLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L + AQI+   EN+    V ++   S F L + P   +P
Sbjct: 61  SSSENGTFTIPARKFLDICRSLNEDAQITVNYEND---RVLVTAERSKFNLATLPAESYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +      +  SVL+ ++E T F+MA ++ RY+LNG+ F    E+  L  VATDGH
Sbjct: 118 NLTQLDVDVELNIEQSVLRRVMEATQFSMANQDARYFLNGMKFET--ENNVLRTVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +   +    +IIVPRK V E++R+L S   +  + + +S I +++ ++  + 
Sbjct: 176 RLAVCGIQLQQNVPD-YAIIVPRKGVIELMRLLDSNSENAYIRMGQSNIQVHLNNVIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P + D+ L V+  +L+QA  R +I+S+ R + V+L + +++L +  
Sbjct: 235 KLIDGRFPDYRRVLPKNADRILEVDWNSLKQACIRAAILSNERFRGVRLIIEANQLKILA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NPD  +A E ++V Y   PM++ FN  Y+L++++ +         V  RL  + SS  I
Sbjct: 295 QNPDQEEAEEVIDVSYQGEPMEVGFNVSYILDVLNALKCQS-----VRMRLTDATSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++          NA YV+MPMR+
Sbjct: 350 EDCEQ---------SNAEYVIMPMRL 366


>gi|145628066|ref|ZP_01783867.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21]
 gi|144979841|gb|EDJ89500.1| DNA polymerase III subunit beta [Haemophilus influenzae 22.1-21]
          Length = 366

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQD---RALVQSGRSRFTLATQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETSDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFIRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|319775074|ref|YP_004137562.1| DNA polymerase III subunit beta [Haemophilus influenzae F3047]
 gi|329123015|ref|ZP_08251586.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius
           ATCC 11116]
 gi|317449665|emb|CBY85871.1| DNA polymerase III, beta subunit [Haemophilus influenzae F3047]
 gi|327471946|gb|EGF17386.1| DNA-directed DNA polymerase III beta subunit [Haemophilus aegyptius
           ATCC 11116]
          Length = 366

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDESEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIEATQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|254447344|ref|ZP_05060810.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015]
 gi|198262687|gb|EDY86966.1| DNA polymerase III, beta subunit [gamma proteobacterium HTCC5015]
          Length = 366

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 130/385 (33%), Positives = 216/385 (56%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R  +L  L      +ERKNT+P   +VL++A  G +++ A+  EIE+       
Sbjct: 1   MKLHLSRESLLTPLQKVIGAVERKNTMPALGNVLIKAQGGEIQMTATDLEIELLAKSVLP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G IT+ A  L DI + L DGA I+   + E      +S G S F L + P ++FP 
Sbjct: 61  VDQEGDITLPARKLLDICKNLPDGADITLQVDAE---RATLSSGRSRFKLSTLPAADFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  + V  F L  S L+ ++++T FAMA +++RYYLNG+   ++   ++  AVATDGHR
Sbjct: 118 LEAVQGVTQFTLPQSTLRKVIDKTSFAMAQQDVRYYLNGLMLELDGSTVR--AVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E D    I     +I+PRK V E+ R+L  ++   +VSLS + I +++ +L  + +
Sbjct: 176 LALCETDAGLDIGDKKQVIIPRKGVQELSRLLDDEERDAEVSLSNNHIQVDLGNLRFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+YQ V+P + DK +  +  +L+ A+ R S++S+ + + V+L   +  L +  +
Sbjct: 236 LIDGRFPDYQRVMPANCDKVVSADKQDLKLALTRTSVLSNEKYKGVRLVADNGALTIQTN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + V Y    M+I FN  Y+L++++N+      ++ V   L  +NSS  + 
Sbjct: 296 NPEQEEAEEQLEVQYQGENMEIGFNVNYMLDVLNNL-----TEELVTIALKDANSSCLVE 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +  +  A YV+MPMR+
Sbjct: 351 ---------EVGEQTAKYVIMPMRL 366


>gi|254363201|ref|ZP_04979250.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica PHL213]
 gi|153095095|gb|EDN75646.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica PHL213]
          Length = 367

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+IT+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T      
Sbjct: 1   MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI + L D + IS   E +   +  I  G S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEED---KAIIKAGRSKFSLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++S D +V++ +  S I + +  +  +
Sbjct: 176 HRLAVCTMVLNQELL-THSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS++ L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y+   M++ FN  Y+L++++ +         V F L  S+SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKCQ-----RVRFSLVDSSSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  S           YV+MPMR+
Sbjct: 350 IEDCDNSSAE---------YVIMPMRL 367


>gi|309751342|gb|ADO81326.1| DNA polymerase III beta subunit [Haemophilus influenzae R2866]
          Length = 366

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  N   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGNWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNTLKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|309973508|gb|ADO96709.1| DNA polymerase III beta subunit [Haemophilus influenzae R2846]
          Length = 366

 Score =  354 bits (910), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 211/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F+L  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFQLPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V  RL  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMRLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSSE---------YVIMPMRL 366


>gi|260581929|ref|ZP_05849725.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127]
 gi|260095122|gb|EEW79014.1| DNA polymerase III, beta subunit [Haemophilus influenzae NT127]
          Length = 366

 Score =  354 bits (909), Expect = 1e-95,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E++     S
Sbjct: 1   MQFSISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P
Sbjct: 61  SSSENGTFTIPAKKFLDICRTLSDDSEITVTFEQD---RALVQSGRSRFTLTTQPAEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    FEL  + L+ L+E T F+MA ++ RY+LNG+ F      L+   VATDGH
Sbjct: 118 NLTDWQSEVDFELPQNTLRRLIESTQFSMANQDARYFLNGMKFETEGNLLR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + +  ++ +  S+I+PRK V E++R+L + D   ++ +  + + +++++   + 
Sbjct: 176 RLAVCTISLEQEL-QNHSVILPRKGVLELVRLLETNDEPARLQIGTNNLRVHLKNTVFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+Y+ V+P +  K +  +   L+QA  R SI+S+ R ++V+LSL  ++L +T 
Sbjct: 235 KLIDGRFPDYRRVLPRNATKIVEGSWEMLKQAFVRASILSNERARSVRLSLKENQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +A E ++V YN   +++ FN  Y+L++++ +  +     +V   L  + SS  I
Sbjct: 295 SNTEHEEAEEIVDVNYNGEELEVGFNVTYILDVLNALKCN-----QVRMCLTDAFSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +  S           YV+MPMR+
Sbjct: 350 ENCEDSSCE---------YVIMPMRL 366


>gi|307260452|ref|ZP_07542147.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
 gi|306869855|gb|EFN01637.1| DNA polymerase III subunit beta [Actinobacillus pleuropneumoniae
           serovar 12 str. 1096]
          Length = 367

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA--IP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVAILE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E +      +    S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEED---RALVRAARSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  +           YV+MPMR+
Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367


>gi|261493281|ref|ZP_05989808.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
 gi|261496475|ref|ZP_05992855.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261307678|gb|EEY09001.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. OVINE]
 gi|261311131|gb|EEY12307.1| DNA-directed DNA polymerase III beta subunit [Mannheimia
           haemolytica serotype A2 str. BOVINE]
          Length = 369

 Score =  354 bits (908), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 213/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+IT+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T      
Sbjct: 3   MQITITREQLLKPLQQVCGVLSSRPTLPVINNLLLEIEGNRLSLTGTDLEVELTTQAQLL 62

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI + L D + IS   E +   +  I  G S F L + P S++
Sbjct: 63  QAVDFAGKFTIPAKKFLDISKSLPDDSVISVQFEED---KAIIKAGRSKFSLATLPASDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 120 PNLMDWKPEVDFSIDQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++S D +V++ +  S I + +  +  +
Sbjct: 178 HRLAVCTMVLNQELL-THSVIVPRKAVLELSRLVASNDETVRLEIGSSNIRITMNGIVFT 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS++ L +T
Sbjct: 237 SKLIDGRFPDYRRVLPRNADRILEAETETLKRALMRAAILSNEKFRGVRLTLSNNLLKIT 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y+   M++ FN  Y+L++++ +         V F L  S+SS  
Sbjct: 297 ANNPEQEEAEEIIDVAYDSPEMEVGFNVSYVLDVLNTLKCQ-----RVRFSLVDSSSSCL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  S           YV+MPMR+
Sbjct: 352 IEDCDNSSAE---------YVIMPMRL 369


>gi|322513484|ref|ZP_08066594.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae
           ATCC 25976]
 gi|322120703|gb|EFX92587.1| DNA-directed DNA polymerase III beta subunit [Actinobacillus ureae
           ATCC 25976]
          Length = 367

 Score =  353 bits (907), Expect = 2e-95,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 209/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MQFTITREQLLKPLQQVCGVLSSRPTLPVINNILLEIEGDRLSLTGTDLEVELTTVATLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +VD  G  T+ A    DI R L + + IS   E        +    S F L + P S++
Sbjct: 61  QAVDFAGKFTIPAKKFLDICRSLPEDSSISVQFEE---YRALVRAARSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ R+++  D +V++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELSRLVAVSDETVRLEIGTSNLRVSMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ + + V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEVLKRALMRAAILSNEKFRGVRLALSENLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSLEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D  +           YV+MPMR+
Sbjct: 350 IEDCDNSTAE---------YVIMPMRL 367


>gi|115378321|ref|ZP_01465487.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1]
 gi|115364675|gb|EAU63744.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 444

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 204/386 (52%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +   ++ + L  A  I+ERK T+P+  +VL+ A    + + A   +I +    PA 
Sbjct: 77  MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 136

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T++A  ++DIV+ L D         N     V+I+ G ++F +      E+P 
Sbjct: 137 VSKPGAVTLNAKYIFDIVQNLPDAQVTLKKLANNY---VDIASGSAHFKIVGMAAEEYPK 193

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +EE     +++ + L  ++++T FA++++E RY LNG++F   +   K+  VATDGHR
Sbjct: 194 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFEP-QSGGKVRMVATDGHR 252

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E ++         +I+PRK + E+ R+L    D+   +  +E+        L+M +
Sbjct: 253 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 312

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG+FP YQ VIP   +K + V+     + + R++++S+ +  AV++ L  +KL +T 
Sbjct: 313 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 372

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD+G+A +++ + Y    + I FN +YL++++    +     DEV F L   +S   +
Sbjct: 373 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 427

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +   V+MPMR+
Sbjct: 428 HAP---------GDRSFTAVVMPMRV 444


>gi|162147556|ref|YP_001602017.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209542190|ref|YP_002274419.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|161786133|emb|CAP55715.1| DNA polymerase III subunit beta [Gluconacetobacter diazotrophicus
           PAl 5]
 gi|209529867|gb|ACI49804.1| DNA polymerase III, beta subunit [Gluconacetobacter diazotrophicus
           PAl 5]
          Length = 374

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 143/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   + E++NTIP+  +VL+   DG L + A+  EI +   I A 
Sbjct: 1   MKLKADRATLLKALAHIQSVAEKRNTIPILANVLINVADGRLTLTATDMEIAVVEEIGAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++T  A +LY+I RKL DG  I           + +  G     L      +FPS
Sbjct: 61  TSRNGAVTAPAAVLYEIARKLPDGVAIELDHTGGDAP-LALRAGRYATSLNVLDVDDFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
                  Y F + ++VL+ L++RT FA++TEE RYYLNGI+ H+   +E   L AVATDG
Sbjct: 120 MMAGTLPYHFTMPAAVLRGLIDRTRFAISTEETRYYLNGIYLHVAAGDEGSMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E ++     +MP +IVPRK V E+ ++L      V V LS++RI   + +++++
Sbjct: 180 HRLARVETEVPPGAEEMPGVIVPRKTVAELRKLLDEGTEDVAVGLSDTRIQFTVGTVTLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y  VIP  NDK LRV   +   AV RV+ +S  R + VKLS+  + L ++
Sbjct: 240 SKLIDGTFPEYDRVIPRGNDKILRVGKRDFSDAVARVAAISQERSRPVKLSIGHNLLTLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             +PD G A E ++   V Y+  P++I F  +YL +I D I  D      V F    S++
Sbjct: 300 AVSPDQGTAKEELDDNYVTYDSTPLEIGFQARYLNDITDQIDKD------VEFAFSDSSA 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R     S         A YVLMPMR+
Sbjct: 354 PTIVRDVASPS---------ALYVLMPMRV 374


>gi|219871633|ref|YP_002476008.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165]
 gi|219691837|gb|ACL33060.1| DNA polymerase III subunit beta [Haemophilus parasuis SH0165]
          Length = 367

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 208/387 (53%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T      
Sbjct: 1   MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G  T+ A    DI R L D + IS   + +    V I    S F L + P S++
Sbjct: 61  EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDED---RVFIRADRSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS  + +    F +  + L  L+E T F+MA ++ RY+LNG+ F      L+  +VATDG
Sbjct: 118 PSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E++R++   + SV++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L  +   L+ A+ R +I+S+ R + V+L+L+ + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADAEVLKHALVRAAILSNERFRGVRLALNQNLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +         V   L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQ-----RVRISLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D            A YV+MPMR+
Sbjct: 350 IEDCDN---------ATAEYVIMPMRL 367


>gi|90415377|ref|ZP_01223311.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2207]
 gi|90332700|gb|EAS47870.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2207]
          Length = 366

 Score =  353 bits (906), Expect = 3e-95,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 210/386 (54%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK ++ R  +L  L     ++ER+ T+P+  +VLL  +   L +  +  E+EI G     
Sbjct: 1   MKFSLSREALLNPLQLVVGVVERRQTLPILSNVLLTLDGSRLAVTGTDLEVEIIGHADVV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G +TVSA    DI R L +GA I F   +    +  +  G S F L + P +EFP
Sbjct: 61  SADEAGEVTVSARKFLDICRSLPEGANIKFSSSD---GKAQVVSGRSRFTLATLPANEFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    E    F++A  +LKNL++ T FAMA +++RYYLNG+ + ++    KL AVATDGH
Sbjct: 118 SVDNGENNIQFDIAGVILKNLIDATSFAMAQQDVRYYLNGMLWEVSAN--KLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+ + +   +I ++   I+PRK V E+ R+++  +  V+V++  + I ++      + 
Sbjct: 176 RMALCDAECNIEIGELTKAILPRKGVIELSRLVAD-EGVVRVAMGSNHIRVDGSDYCFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG +P+Y  V+P   DK +  N   L+QA  R +I+S+ + + V++ LS+  + M  
Sbjct: 235 KLVDGAYPDYDRVLPKGGDKLVEGNRAELKQAFGRTAILSNEKYRGVRIMLSNGAIKMVA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  YLL++++ +  D      V   L  S+SS  +
Sbjct: 295 NNPEQEEAEEEVGVDYAGDELEIGFNVSYLLDVLNVLKGDG-----VRLTLSDSSSSALV 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 S         A YV+MPMR+
Sbjct: 350 EDAADGS---------AVYVVMPMRL 366


>gi|114798873|ref|YP_759292.1| DNA polymerase III subunit beta [Hyphomonas neptunium ATCC 15444]
 gi|114739047|gb|ABI77172.1| DNA polymerase III, beta subunit [Hyphomonas neptunium ATCC 15444]
          Length = 373

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 148/388 (38%), Positives = 224/388 (57%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ER D+L+ L H   I+ER+ TIP+  +VLL+A  G L++ A+  +IE   +  A+
Sbjct: 1   MKLTIERGDLLDALSHVQNIVERRTTIPILSNVLLEATQGALKLTATDLDIEAVDSALAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T  A  L+D+VRKL  GA++     N     + I+ G S F L + P ++F +
Sbjct: 61  VSRPGSVTAPAGTLFDVVRKLPSGAEVELEL-NPESQRLTIAAGRSLFELPTLPAADFQT 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATD 177
              +E   SF++A+     L+++T FA++TEE RYYLNGI+ H    ++    L  VATD
Sbjct: 120 MTPDEGAVSFKIAAKDFARLIDKTRFAISTEETRYYLNGIYLHAAKADDGSAVLRTVATD 179

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA+AE+       K+  +IVPRK VGE  R+L   D  V++ +S+++I L      +
Sbjct: 180 GHRLALAELKAPKGAEKLTGVIVPRKTVGEARRLLDGLDEDVEIEVSDTKIILRAGRAVL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDG FP+Y  VIP  NDK++ V+      AVDRVS +S+ R ++VKLS+S+ +L +
Sbjct: 240 TSKLIDGSFPDYARVIPKGNDKKMTVDNKAFEAAVDRVSTVSAERSRSVKLSVSNGRLTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V++ + G   E +   Y   PM+I FN KYLL+I   I S      EV F  +   S  
Sbjct: 300 AVNHAETGAGNEEIEAEYESEPMEIGFNAKYLLDIAGQIESS-----EVEFMFNDPASPA 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +     DS         A +V+MP+R+
Sbjct: 355 LVLDPSDDS---------ARFVVMPLRV 373


>gi|167854884|ref|ZP_02477660.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
 gi|167853951|gb|EDS25189.1| DNA polymerase III subunit beta [Haemophilus parasuis 29755]
          Length = 367

 Score =  352 bits (904), Expect = 5e-95,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 209/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+ R  +L+ L   C ++  + T+PV  ++LL+     L +  +  E+E+T      
Sbjct: 1   MQFTITREQLLKPLQQVCGVLTSRPTLPVINNILLEIEGSRLSLTGTDLEVELTTQAELF 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G  T+ A    DI R L D + IS   + +    V I    S F L + P S++
Sbjct: 61  EAVSFSGKFTIPAKKFLDICRSLPDDSVISVQFDED---RVFIRADRSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS  + +    F +  + L  L+E T F+MA ++ RY+LNG+ F      L+  +VATDG
Sbjct: 118 PSLMDWKPEVDFTIEQATLARLIEATQFSMANQDARYFLNGMKFETEGNLLR--SVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E++R++   + SV++ +  S + +++  +  +
Sbjct: 176 HRLAVCTMALNQELL-THSVIVPRKAVLELVRLVGHNNESVRLEIGTSNLRVSMNGIVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L  +   L++A+ R +I+S+ R + V+L+L+ + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADAEVLKRALVRAAILSNERFRGVRLALNQNLLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  YLL++++ +         V   L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVSYQSAEMEVGFNVSYLLDVLNTLKCQ-----RVRISLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D            A YV+MPMR+
Sbjct: 350 IEDCDN---------ATAEYVIMPMRL 367


>gi|58579625|ref|YP_198641.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84621659|ref|YP_449031.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188574272|ref|YP_001911201.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzae
           PXO99A]
 gi|58424219|gb|AAW73256.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae
           KACC10331]
 gi|84365599|dbj|BAE66757.1| DNA polymerase III beta chain [Xanthomonas oryzae pv. oryzae MAFF
           311018]
 gi|188518724|gb|ACD56669.1| DNA polymerase III, beta subunit [Xanthomonas oryzae pv. oryzae
           PXO99A]
          Length = 366

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 214/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+     A 
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMIARTMAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DVQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+LR+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELLRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|289662283|ref|ZP_06483864.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           vasculorum NCPPB702]
 gi|289667648|ref|ZP_06488723.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           musacearum NCPPB4381]
          Length = 366

 Score =  351 bits (901), Expect = 1e-94,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|294665123|ref|ZP_06730426.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
 gi|292605124|gb|EFF48472.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 10535]
          Length = 366

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|33151999|ref|NP_873352.1| DNA polymerase III subunit beta [Haemophilus ducreyi 35000HP]
 gi|33148221|gb|AAP95741.1| DNA polymerase III beta chain [Haemophilus ducreyi 35000HP]
          Length = 367

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 206/387 (53%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ R  +L+ L   C ++  + T+PV  ++LL  N   L +  +  E+E+T      
Sbjct: 1   MQLTITREQLLKPLQQVCGVLSSRPTLPVINNILLDINGSRLSLTGTDLEVELTTQAELE 60

Query: 61  --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             VD  G  T+ A    DI R L + + IS   E +      I    S F L + P S++
Sbjct: 61  QAVDFSGKFTLPAKKWLDICRSLPENSLISIQFEQD---RALIRADRSKFNLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  + +    F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWKPEVDFSMEQSTLSRLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++    S+IVPRKAV E+ RILS     V++ +  + + +++  +  +
Sbjct: 176 HRLAVCTMALSQELT-THSVIVPRKAVLELSRILSMTADPVRLEIGTNNLRISMNGVVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L      L++A+ R +I+S+ +   V+L+LS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEAETEMLKRALMRAAILSNEKFHGVRLALSENMLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M+I FN  YLL++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQNTAMEIGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +  +           YV+MPMR+
Sbjct: 350 IEDCENSTAE---------YVIMPMRL 367


>gi|87199450|ref|YP_496707.1| DNA polymerase III subunit beta [Novosphingobium aromaticivorans
           DSM 12444]
 gi|87135131|gb|ABD25873.1| DNA polymerase III, beta subunit [Novosphingobium aromaticivorans
           DSM 12444]
          Length = 375

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 151/392 (38%), Positives = 231/392 (58%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL++A  D  + + A+  +++I   + A
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIEAAPDSTVRLMATDLDLQIIETMSA 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            SV+  G+ITVSAHLL+DI RKL DG+Q+S    +     + +  G S F L + P  +F
Sbjct: 61  VSVEAPGAITVSAHLLFDIARKLPDGSQVSLETSD---NRMIVKAGRSRFQLPTLPRDDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATD 177
           P   E +   SFE+ +  L  L++RT FA++TEE RYYLNGIF H++++    L A ATD
Sbjct: 118 PVIVEGDLPTSFEIPARTLAELIDRTRFAISTEETRYYLNGIFLHVSDDPQPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES-- 234
           GHRLA   +        MP +IVPRK VGE+ ++L    DS+V + LS S+I   +    
Sbjct: 178 GHRLARFTITRPDGAEGMPDVIVPRKCVGELRKLLEEVLDSAVLIDLSASKIRFTLGGEN 237

Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + ++ +LIDG FP+Y  VIP  NDK L+++  +  + VDRV+ +++ + +AVK++L +D
Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKLDPRSFFEGVDRVATIATEKTRAVKMALEND 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ ++V +PD G A E +   Y+    +I FN  YL +I+  I       D V   L  +
Sbjct: 298 RVTLSVTSPDNGTAAEELPADYSSTGFEIGFNANYLKDILSQIDG-----DTVELHLADA 352

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR         KD+K  A YVLMPMR+
Sbjct: 353 GAPTLIR---------KDDKSAALYVLMPMRV 375


>gi|21240776|ref|NP_640358.1| DNA polymerase III subunit beta [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78045558|ref|YP_361733.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325926218|ref|ZP_08187576.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118]
 gi|21106040|gb|AAM34894.1| DNA polymerase III beta chain [Xanthomonas axonopodis pv. citri
           str. 306]
 gi|78033988|emb|CAJ21633.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           vesicatoria str. 85-10]
 gi|325543400|gb|EGD14825.1| DNA polymerase III, beta subunit [Xanthomonas perforans 91-118]
          Length = 366

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|21229480|ref|NP_635397.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66766354|ref|YP_241116.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|188989398|ref|YP_001901408.1| DNA polymerase III subunit beta [Xanthomonas campestris pv.
           campestris str. B100]
 gi|21110940|gb|AAM39321.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris str. ATCC 33913]
 gi|66571686|gb|AAY47096.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris str. 8004]
 gi|167731158|emb|CAP49330.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris]
          Length = 366

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 126/385 (32%), Positives = 215/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q N+G L +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTVS---QTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    +    IIVPRK V E+LR+L + D  V++ L  S I +    ++ + +
Sbjct: 176 LALCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|117923320|ref|YP_863937.1| DNA polymerase III subunit beta [Magnetococcus sp. MC-1]
 gi|117607076|gb|ABK42531.1| DNA polymerase III, beta subunit [Magnetococcus sp. MC-1]
          Length = 376

 Score =  350 bits (899), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 120/393 (30%), Positives = 198/393 (50%), Gaps = 25/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V R   L+ L     ++E++NT+P   + LL+A+   L + A+  E+ +    PA 
Sbjct: 1   MEFHVSREPFLKALQRLQSVVEKRNTMPELGNALLEASAEGLTLTATDLEVSMKSHCPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+I VSA  L++IVR+L   +        E G  + ++ G + F L       FP 
Sbjct: 61  VESSGAIAVSARKLFEIVRELPQDSLRLRS---EAGERLVLTCGRARFTLVGIRADIFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI--------NEEDLKLC 172
             E     SF L+   L  ++ +THFAM+ +E RY LNGI  H+          E+  + 
Sbjct: 118 FPETTQGQSFTLSGPRLAEMIAKTHFAMSQDETRYTLNGILLHLVSAADAELAGENGLVR 177

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+AE+ +   + +   +I+PRK V EI +++   D +V++ L E+ I ++ 
Sbjct: 178 IVATDTHRLAMAEMALDIPVEESAELIIPRKGVQEIRKLVEEDDEAVELGLDENFIRVSK 237

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             + ++ +L+ G FPNYQ VIP  N   L +    L   V R+ ++S  + + ++++LSS
Sbjct: 238 PGIVLTSKLVSGRFPNYQRVIPTDNPHLLELEKEPLFGVVKRMMVLSHEKSRGIRMALSS 297

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D + ++  NP+   A E M   +    M + FN +YL EI+   +      D V  +L  
Sbjct: 298 DHIKVSAQNPEQEAAEEEMPCSFAGKDMTVGFNARYLQEIVSVANG-----DTVRMKLRD 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S V +          + +     YVLMPMR+
Sbjct: 353 EESPVLVE---------EHSATGYLYVLMPMRV 376


>gi|238898808|ref|YP_002924490.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
 gi|229466568|gb|ACQ68342.1| DNA polymerase III, beta-subunit [Candidatus Hamiltonella defensa
           5AT (Acyrthosiphon pisum)]
          Length = 368

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 214/388 (55%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ N+ +L + A+  ++E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVISPLSARPTMPILGNLLLQVNENVLFLTATDLQMEMVVRVVLS 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   GS TV A   +DI R L +G+ I+   +   G  + +  G S F L + P S 
Sbjct: 61  HSDLHESGSTTVPARKFFDIWRGLLEGSTITVTLD---GDRLLVYSGRSRFSLSTLPSSG 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   + +   +F L    LK L++ T F+MA +++RYYLNG+ F    ++L+   VATD
Sbjct: 118 FPGLDDWKTQVAFSLPQETLKKLIDATQFSMAHQDVRYYLNGMLFETENKELR--TVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLAV  +     +    S+IVPRK V E+ R+L +    VK+ + E  I  ++++L+ 
Sbjct: 176 GHRLAVCSMSTDETLP-SYSVIVPRKGVIELGRLLEASVHPVKLHIGEHNIRAHLDNLTF 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LID  FP+Y+ V+P + +K L   C  L+QA  RV+I+S+ + + V+L LS +++ +
Sbjct: 235 TCKLIDARFPDYRRVLPKNPNKILEAKCDLLKQAFSRVAILSNEKFRGVRLYLSHNQMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +NP+  +A E +++ Y    ++I  N  Y+L+I++ +  D+     V F L ++ SS+
Sbjct: 295 TANNPEQEEAEEILDIEYEGEELEIGLNVSYILDILNILKCDK-----VRFLLINAASSL 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I        +         Y+LMPMR+
Sbjct: 350 QIEDHSSQMVS---------YILMPMRL 368


>gi|119947309|ref|YP_944989.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37]
 gi|119865913|gb|ABM05390.1| DNA polymerase III, beta subunit [Psychromonas ingrahamii 37]
          Length = 367

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 122/387 (31%), Positives = 214/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHA-CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M  ++ R   L  L      +   +  +P+  ++L++  D  L +  +  E+E+   I  
Sbjct: 1   MHFSISREAFLRPLQLVVSSVAGGRPALPIMANILIEVKDNQLSLTGTDLEVELIAVIAL 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                 G ITV A  L DI R L +  +I F  + E   +V I  G S + L S P  +F
Sbjct: 61  ENPSENGVITVPARKLLDICRGLSEPCEIKFQVKEE---KVTIRSGRSRYLLSSLPAVDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  + +    +  +  K L+E T FAMA++++RYYLNG++F  +E+ L+  +VATDG
Sbjct: 118 PNIESWQSLVELTVPQAEFKKLIEFTQFAMASQDVRYYLNGMYFEASEQTLR--SVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +  Q+ +  S+IVPRK V E++++L +  ++V + + ++ +   I+    +
Sbjct: 176 HRLASCSIKL-NQVIEQQSVIVPRKGVIELVKLLDNDQANVTIQIGQNNLRAVIDGFIFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +L+DG FP+Y+ VIP + DKEL  N  +L+QA  R +I+S+ + + V+L LS + L +T
Sbjct: 235 TKLVDGRFPDYRRVIPKNGDKELISNRESLKQAFSRAAILSNEKFRGVRLILSENLLQIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y+   ++I FN  Y+L++++ + S     ++V     +S+ S  
Sbjct: 295 ANNPEREEAEEYIDVDYHSANLEIGFNVSYVLDVLNTLKS-----EQVKITFSNSDHSAL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D D         ++ YVLMPMR+
Sbjct: 350 IESIDSD---------DSLYVLMPMRL 367


>gi|119471659|ref|ZP_01614044.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
           polymerase III [Alteromonadales bacterium TW-7]
 gi|119445438|gb|EAW26725.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
           polymerase III [Alteromonadales bacterium TW-7]
          Length = 367

 Score =  350 bits (898), Expect = 2e-94,   Method: Composition-based stats.
 Identities = 129/386 (33%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+   +   
Sbjct: 1   MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+    +T+ A  L DI + L +G+ I+   ++    ++ ++ G S F L +   ++FP
Sbjct: 61  DDIADTKLTLPAKKLLDICKSLPEGSDITLSLQDH---QLLLTSGKSRFSLTTLSAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDGH
Sbjct: 118 NLEEWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +   +     +I+PRK V EI+R++ + D  V +    + I +     + + 
Sbjct: 176 RLAIAQKKLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKTIIANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V F L  SNSS  I
Sbjct: 296 NNPEQEQAEEVVEVNYQGDELEIGFNVSYVLDVLNTLKT-----EDVQFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   D          A YV+MPMR+
Sbjct: 351 EGAGDDE---------AMYVVMPMRL 367


>gi|315125113|ref|YP_004067116.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913]
 gi|315013626|gb|ADT66964.1| DNA polymerase III subunit beta [Pseudoalteromonas sp. SM9913]
          Length = 367

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+  ++   
Sbjct: 1   MQITISREQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVASVFVG 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            DV    +T+ A  L DI + L DG+ ++   ++    ++ ++ G S F L +    +FP
Sbjct: 61  DDVADTKLTLPAKKLLDICKSLPDGSDLTLSLQDH---QLLLTSGKSRFSLTTLAAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDGH
Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNSDIK--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +   +     +I+PRK V EI+R++ +    V +    + I +     + + 
Sbjct: 176 RLAIAQKQLGQSLNTQRQLIIPRKGVQEIMRLMVADQELVTIQFGANHIRIIDIEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V+F L  SNSS  I
Sbjct: 296 NNPEQEQAEEVVEVMYEGDDLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   +          A YV+MPMR+
Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367


>gi|53802864|ref|YP_115419.1| DNA polymerase III subunit beta [Methylococcus capsulatus str.
           Bath]
 gi|53756625|gb|AAU90916.1| DNA polymerase III, beta subunit [Methylococcus capsulatus str.
           Bath]
          Length = 366

 Score =  349 bits (897), Expect = 3e-94,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 197/385 (51%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R D+L  L     +IER+ T+P+  +VL++   G +E+  +  E+++       
Sbjct: 1   MKFRILREDLLLPLQQVIGVIERRQTLPILSNVLIEVEAGRMELAGTDLEVQLVANTDME 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TV A  L DI R L +G +++F  + E    V++  G S F L + P   +P+
Sbjct: 61  GKESGRFTVPARKLMDICRLLPEGGELAFDVKPE---RVSLQCGKSRFILGALPAENYPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  +    F+  + +L+  +E+T FAMA +++RYYLNG+   I +   ++ AVA+DGHR
Sbjct: 118 FEHGDPEAVFDCEAQLLRRAIEKTAFAMAQQDVRYYLNGLLLEIRQG--RIRAVASDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E  +         II+PRK V E+ R+L+  + S  V +S + + +   + S +V+
Sbjct: 176 LALFEDAVDGMPDVARQIIIPRKGVLELGRLLARVEGSASVRISANNVRILFGTFSFAVK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G +P+Y+ VIP +  + + V+   LR A+ RV+++S+ + + V L +    + +   
Sbjct: 236 LVEGRYPDYERVIPKTACRVVVVDRHELRGALTRVAVLSNEKFKGVSLEIGEGLIRLRAQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A + +    +     + FN  YLL+ I+      V  D V      +N S  I 
Sbjct: 296 NPEHEEAEDEVPADVSGEAFAVGFNASYLLDAINA-----VASDAVRMSFTDANGSCLIE 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +     +++MPMR+
Sbjct: 351 D---------LSDSRYRFIVMPMRL 366


>gi|58038493|ref|YP_190457.1| DNA polymerase III subunit beta [Gluconobacter oxydans 621H]
 gi|58000907|gb|AAW59801.1| DNA polymerase III, beta chain [Gluconobacter oxydans 621H]
          Length = 374

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 139/390 (35%), Positives = 216/390 (55%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R+ +   L H   + E++NTIP+  +VL+   D +L + A+  EI +   +PAS
Sbjct: 1   MKFKVDRTLLQRALAHIHGVAEKRNTIPILANVLMSYQDDVLRLTATDMEIAVVEDVPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GS TV A +L++IVRKL DG  + F  ++     + +  G     L   P  +FP+
Sbjct: 61  GERSGSTTVPAAVLFEIVRKLPDGVALEFDHQDSEAP-LALRAGRYATSLNVLPVDDFPA 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
               +  + F + ++ L+ L++RT FA++ EE RYYLNGI+ H+ E      L AVATDG
Sbjct: 120 MVAGDLPHRFSIPAATLRGLIDRTKFAISNEETRYYLNGIYLHVAENGSIPMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E ++      MP +I+PRK + E+ ++L    + ++VSLS++RI      + ++
Sbjct: 180 HRLARVETELPEGARGMPGVIIPRKTINELRKLLDEGAADLEVSLSDTRIQFQAGPVLLT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP  ND+ LRV   +   AV RV+ +S  R + VKLS++ + L ++
Sbjct: 240 SKLIDGTFPEYERVIPKGNDRILRVGKRDFAAAVGRVAAISQERSRPVKLSVTQNMLNLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             +PD G A E ++   V Y+  P++I F  +YL +I D I        EV F    S++
Sbjct: 300 ATSPDQGVAHEELDENAVSYDAAPIEIGFQARYLTDITDQID------VEVEFAFSDSSA 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R     S         A YVLMPMR+
Sbjct: 354 PTIVRDTASPS---------ALYVLMPMRV 374


>gi|325922760|ref|ZP_08184494.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865]
 gi|325546756|gb|EGD17876.1| DNA polymerase III, beta subunit [Xanthomonas gardneri ATCC 19865]
          Length = 366

 Score =  349 bits (897), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 214/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+LR+L + D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|285016823|ref|YP_003374534.1| DNA polymerase III subunit beta protein [Xanthomonas albilineans
           GPE PC73]
 gi|283472041|emb|CBA14548.1| probable dna polymerase III subunit beta protein [Xanthomonas
           albilineans]
          Length = 366

 Score =  349 bits (896), Expect = 4e-94,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 214/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  + L+Q + G L +  +  E+E+   I   
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVHGGQLSLTGTDLEVEMVSRIAVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L++IVR L DG++++    N+   ++ +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFEIVRALPDGSKVTVSLSND---KITVQTGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F ++++ L+   VATDGHR
Sbjct: 118 VDEVETTERVVVQEAALKELIERTAFAMAQQDVRYYLNGLLFDLHDKTLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         IIVPRK V E+ R+L   D  V++ +  S + +    ++ + +
Sbjct: 176 LALCETELENAGGAKRQIIVPRKGVTELQRLLEGGDREVELEVGRSHVRVKRNDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++++   LR A+ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYETVIPIGADREVKLDREILRAALQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      ++ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEVEADTKVSDLAIGFNVNYLLDALSALR-----EEFVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + +   + +V+MP+R+
Sbjct: 351 ---------EASSARSRHVVMPLRL 366


>gi|294627437|ref|ZP_06706021.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
 gi|292598258|gb|EFF42411.1| DNA polymerase III subunit beta [Xanthomonas fuscans subsp.
           aurantifolii str. ICPB 11122]
          Length = 366

 Score =  349 bits (895), Expect = 5e-94,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTLVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEIELEKAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEAETKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|319785622|ref|YP_004145097.1| DNA polymerase III subunit beta [Pseudoxanthomonas suwonensis 11-1]
 gi|317464134|gb|ADV25866.1| DNA polymerase III, beta subunit [Pseudoxanthomonas suwonensis
           11-1]
          Length = 366

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 212/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R  +L+ L     ++ER+ T+PV  + L+Q  DG L +  +  E+E+       
Sbjct: 1   MRFTLQREALLKPLAQVVNVVERRQTLPVLANFLVQVQDGQLSLTGTDLEVEMIARAAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
             V G IT+ A  L++IVR L DG++++       G +V +  G S F L + P ++FPS
Sbjct: 61  DAVDGEITIPARKLFEIVRALPDGSRVTISL---AGDKVTVQAGRSRFSLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + ++ L+   VATDGHR
Sbjct: 118 VDEVEATERITVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDQSLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E  +   +     IIVPRK V E+ R+L   D S+++ +  S I +  + +S + +
Sbjct: 176 LALCEAPLEQPVGTKRQIIVPRKGVTELQRLLEGGDRSLELEVGRSHIRVKRDDVSFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   +KE+RV+   +R A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGRFPDYEAVIPIGAEKEVRVDREVIRAALQRAAILSNEKYRGVRVEISPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ +V  L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEAETKVDGLAIGFNVNYLLDALGALR-----DEHIVIALRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D            +V+MP+R+
Sbjct: 351 EAGSD---------KCRHVVMPLRL 366


>gi|325915700|ref|ZP_08178005.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325538117|gb|EGD09808.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 366

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 213/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVAVPEAALKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         IIVPRK V E+LR+L + D  V++ +  S I +    ++ + +
Sbjct: 176 LALCETELEKAGGAKRQIIVPRKGVTELLRLLEAADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|166709897|ref|ZP_02241104.1| DNA polymerase III subunit beta [Xanthomonas oryzae pv. oryzicola
           BLS256]
          Length = 366

 Score =  349 bits (895), Expect = 6e-94,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 212/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q  DG + +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVKDGQVSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTIS---QTGDKVTVQAGRSRFTLVTLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVVVPEAGLKELIERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+++         IIVPRK V E+ R+L   D  V++ +  S I +    ++ + +
Sbjct: 176 LALCEMELENAGGAKRQIIVPRKGVTELQRLLEGADREVELEVGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ V+P   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVMPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|77358984|ref|YP_338559.1| DNA polymerase III subunit beta [Pseudoalteromonas haloplanktis
           TAC125]
 gi|76873895|emb|CAI85116.1| DNA polymerase III, beta-subunit; processivity clamp of DNA
           polymerase III [Pseudoalteromonas haloplanktis TAC125]
          Length = 367

 Score =  348 bits (894), Expect = 8e-94,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 217/386 (56%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+  ++   
Sbjct: 1   MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLAVENGQLSMTGTDLEIELVASVFVG 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+    +T+ A  L DI + L DG+ ++   +     ++ ++ G S F L +    +FP
Sbjct: 61  DDIADTKLTLPAKKLLDICKSLPDGSDLTLSLQEH---QLLLTSGKSRFSLTTLAAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDGH
Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +   +     +I+PRK V EI+R++ + +  V +    + I +     + + 
Sbjct: 176 RLAIAQKQLKQSLNTQRQLIIPRKGVQEIMRLMVADEELVTIQFGANHIRIIDIEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRSAFQRVSILSNEKFRGVRLNLSNGLLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V+F L  SNSS  I
Sbjct: 296 NNPEQEQAEEVVEVGYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   +          A YV+MPMR+
Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367


>gi|83749734|ref|ZP_00946711.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551]
 gi|207727477|ref|YP_002255871.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           MolK2]
 gi|207741916|ref|YP_002258308.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           IPO1609]
 gi|83723586|gb|EAP70787.1| DNA polymerase III, beta chain [Ralstonia solanacearum UW551]
 gi|206590714|emb|CAQ56326.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           MolK2]
 gi|206593302|emb|CAQ60229.1| dna polymerase III (beta chain) protein [Ralstonia solanacearum
           IPO1609]
          Length = 371

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 205/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +   + TV+A  L DI+R + DG       +      +++  G S F LQ+    EF
Sbjct: 61  GAGNGDIATTVAARKLVDILRAMPDGEVTLTLNDK----RMSVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++ T L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|332533699|ref|ZP_08409558.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis
           ANT/505]
 gi|332036863|gb|EGI73324.1| DNA polymerase III beta subunit [Pseudoalteromonas haloplanktis
           ANT/505]
          Length = 367

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 216/386 (55%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+IT+ R   L+ L      IERK+T+P+  +VLL   +G L +  +  EIE+   +   
Sbjct: 1   MQITISRQQFLKPLVQVSGAIERKHTLPILSNVLLVVENGQLSMTGTDLEIELVSGVFVG 60

Query: 61  VDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D+    +T+ A  L DI + L DG+ I+   +     ++ ++ G S F L +    +FP
Sbjct: 61  DDIADTKLTLPAKKLLDICKSLPDGSDITLSLQEH---QLLLTSGKSRFSLTTLSADDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +    F+L    L+ L+E THF+MA +++RYYLNG+ F ++  D+K   VATDGH
Sbjct: 118 NLEQWDGEVEFQLTRLELRKLLESTHFSMANQDVRYYLNGMSFEVDNTDIK--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +   +     +I+PRK V EI+R++ + D  V +    + I +     + + 
Sbjct: 176 RLAIAQKQLTQSLNTQRQLIIPRKGVQEIMRLMVADDELVTIQFGANHIRIIDIEFTFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P   DK +  N   LR A  RVSI+S+ + + V+L+LS+  L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRGGDKVITANREWLRNAFQRVSILSNEKFRGVRLNLSNGLLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + V Y    ++I FN  Y+L++++ + +     ++V+F L  SNSS  I
Sbjct: 296 NNPEQEQAEEVVEVSYEGADLEIGFNVSYVLDVLNTLKT-----EDVLFTLADSNSSALI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G   +          A YV+MPMR+
Sbjct: 351 EGAGDEE---------AMYVVMPMRL 367


>gi|300689716|ref|YP_003750711.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07]
 gi|299076776|emb|CBJ49383.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum PSI07]
          Length = 371

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +   + TV+A  L DI+R + DG       +      +++  G S F LQ+    EF
Sbjct: 61  GAGNGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMSVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEASDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|21326650|gb|AAL30090.1| DNA polymerase III beta chain [Xanthomonas campestris pv.
           campestris]
          Length = 366

 Score =  348 bits (893), Expect = 9e-94,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 214/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  ++L+Q N+G L +  +  E+E+       
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANLLVQVNNGQLSLTGTDLEVEMISRTMVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L+DI+R L DG++++     + G +V +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFDILRALPDGSRVTVS---QTGDKVTVQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F + +  L+   VATDGHR
Sbjct: 118 VDEVEATERVAVPEAGLKELMERTAFAMAQQDVRYYLNGLLFDLRDGLLR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L + E ++    +    IIVPRK V E+LR+L + D  V++ L  S I +    ++ + +
Sbjct: 176 LPLCETELEKSGSAKRQIIVPRKGVTELLRLLEAADRDVELELGRSHIRVKRGDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + V++ +S  +L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGVRVEVSPGQLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+ VV +L  +NSS  +R
Sbjct: 296 NPEQEEAQEEIEADTKVDDLAIGFNVNYLLDALSALR-----DEHVVIQLRDANSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               +          + +V+MP+R+
Sbjct: 351 EASSE---------KSRHVVMPLRL 366


>gi|17548158|ref|NP_521560.1| DNA polymerase III subunit beta [Ralstonia solanacearum GMI1000]
 gi|17430465|emb|CAD16938.1| probable dna polymerase III (beta chain) protein [Ralstonia
           solanacearum GMI1000]
          Length = 371

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +   + TV+A  L DI+R + DG       +      +++  G S F LQ+    EF
Sbjct: 61  GAGNGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMSVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|73539708|ref|YP_294228.1| DNA polymerase III subunit beta [Ralstonia eutropha JMP134]
 gi|72117121|gb|AAZ59384.1| DNA polymerase III, beta subunit [Ralstonia eutropha JMP134]
          Length = 371

 Score =  348 bits (893), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 208/391 (53%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V +   + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGNDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   ++ +  K+ AVATD
Sbjct: 117 PTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVATD 174

Query: 178 GHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V++  +   +     +I+PRK + E+ R+L   D  V+V L+ +++  +  +
Sbjct: 175 GHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFSFAN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +  
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHM 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ S     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   + D         N  YV+MPMRI
Sbjct: 350 SSALITVPEDD---------NFKYVVMPMRI 371


>gi|85708877|ref|ZP_01039943.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1]
 gi|85690411|gb|EAQ30414.1| DNA polymerase III beta subunit [Erythrobacter sp. NAP1]
          Length = 375

 Score =  347 bits (892), Expect = 1e-93,   Method: Composition-based stats.
 Identities = 149/392 (38%), Positives = 226/392 (57%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59
           MK T+ER+ +L  L H   ++ER+NTIP+  +VL+ A+DG  +++ A+  ++++   + A
Sbjct: 1   MKATIERATLLRCLSHVQSVVERRNTIPILSNVLIDASDGGSVKVMATDLDLQVVETMNA 60

Query: 60  S-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           S V+  G+ITVSAHLL+DI RKL DGAQ+S          + +  G + F L + P  +F
Sbjct: 61  SSVESPGAITVSAHLLFDIARKLPDGAQVSLETAE---NRMEVKAGRARFKLPTLPRDDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED-LKLCAVATD 177
           P   E +   SFE+ +  L  +++ T FA++TEE RYYLNGIF H+ +ED   L A ATD
Sbjct: 118 PVIVEGDLPTSFEIPARTLAQMIDATRFAISTEETRYYLNGIFLHVTDEDEPVLKAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES-- 234
           GHRLA   +        MP +IVPRKAV E+ ++L    D +V+V LS S+I   +    
Sbjct: 178 GHRLARFTLARPDGAEGMPDVIVPRKAVAELRKLLEEALDGAVQVDLSASKIRFTLGGEG 237

Query: 235 -LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + ++ +LIDG FP+Y  VIP  NDK L+V+     + VDRV+ +++ + +AVK+ L +D
Sbjct: 238 GVVLTSKLIDGTFPDYSRVIPTGNDKLLKVDPKLFFEGVDRVATIATEKTRAVKMGLDAD 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           K+ ++V +PD G A E +   Y     +I FN  YL +I+    +     +E+   L  +
Sbjct: 298 KVTLSVTSPDNGNAAEELMADYKSDGFEIGFNANYLKDILGQFDA-----EEIELHLADA 352

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   IR  D            A YVLMPMR+
Sbjct: 353 GAPTLIRESDTSP---------ALYVLMPMRV 375


>gi|190572093|ref|YP_001969938.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia
           K279a]
 gi|254521676|ref|ZP_05133731.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14]
 gi|190010015|emb|CAQ43620.1| putative DNA polymerase III beta subunit [Stenotrophomonas
           maltophilia K279a]
 gi|219719267|gb|EED37792.1| DNA polymerase III, beta subunit [Stenotrophomonas sp. SKA14]
          Length = 366

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 214/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  + L+Q  +G L +  +  E+E+   I   
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L++I+R L DG++I+     + G ++ +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFEIIRALPDGSRITVS---QTGDKITVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F +  + L+   VATDGHR
Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E D+         IIVPRK V E+ R+L S D  +++ +  S + +  + ++ + +
Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V+   LR ++ R +I+S+ + + +++ +S   L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVDREALRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+EV+ +L  SNSS  +R
Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + +   + +V+MP+R+
Sbjct: 351 ---------ESSSEKSRHVVMPLRL 366


>gi|300112747|ref|YP_003759322.1| DNA polymerase III subunit beta [Nitrosococcus watsonii C-113]
 gi|299538684|gb|ADJ27001.1| DNA polymerase III, beta subunit [Nitrosococcus watsonii C-113]
          Length = 367

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 128/386 (33%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R +I+  L   C ++ER++T+P+  +VLL   D  L + A+  EIEI  A    
Sbjct: 1   MRFSIKREEIVRHLVTICGVVERRHTLPILSNVLLSVKDSRLSLMATDLEIEIKTAFDIL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+SA    +I R L   + +    +     +  I  G S F L + P  +FPS
Sbjct: 61  SPEEGKITISARKFLEICRALPSQSALEAQYKE---GQFYIHSGRSRFTLSTLPAEDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + V   EL  + LK L+ RT F MA +++RYYLNG+   + EE   + AVATDGHR
Sbjct: 118 IDSIDAVAELELTQAELKKLLYRTVFCMAHQDVRYYLNGLLLELTEEA--IHAVATDGHR 175

Query: 181 LAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+A +     Q       I+PRKA+ E++R+L   + SV++    +++    + LS S 
Sbjct: 176 LALASLAKGSQQAGTEIQSIIPRKAILELVRLLEESNDSVRLKFGTNQMRAEFQGLSFST 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG+FP+Y+ VIP   +K+   +    +QA+ RV+I+++ + + V L LS+ KL   V
Sbjct: 236 KLIDGQFPDYKRVIPVGCEKQFVADREKFKQALVRVNILTNDKYRGVHLHLSALKLQAIV 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G A E +++ Y    ++I FN  YL++++  I +     +E+     ++NSS  I
Sbjct: 296 TNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVLSIIDT-----EEIKLTFTNANSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D         K ++ YV+MPMR+
Sbjct: 351 TPID---------KADSKYVVMPMRL 367


>gi|194363780|ref|YP_002026390.1| DNA polymerase III subunit beta [Stenotrophomonas maltophilia
           R551-3]
 gi|194346584|gb|ACF49707.1| DNA polymerase III, beta subunit [Stenotrophomonas maltophilia
           R551-3]
          Length = 366

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 215/385 (55%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   L+ L     ++ER+ T+PV  + L+Q  +G L +  +  E+E+   I   
Sbjct: 1   MRFTLQREAFLKPLAQVVNVVERRQTLPVLANFLVQVQNGQLSLTGTDLEVEMVSRIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  T+ A  L++I+R L DG++I+     + G ++ +  G S F L + P ++FPS
Sbjct: 61  DAQDGETTIPARKLFEIIRALPDGSRITVS---QTGDKITVQAGRSRFTLATLPSNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + LK L+ERT FAMA +++RYYLNG+ F +  + L+   VATDGHR
Sbjct: 118 VDEVEATERVAIGEATLKELIERTAFAMAQQDVRYYLNGLLFDLRGDALR--TVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E D+         IIVPRK V E+ R+L S D  +++ +  S + +  + ++ + +
Sbjct: 176 LALCETDLAKPSGSKRQIIVPRKGVTELQRLLESGDREIELEVGRSHVRVKRDDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++VN  +LR ++ R +I+S+ + + +++ +S   L ++  
Sbjct: 236 LIDGRFPDYEAVIPIGADREVKVNRESLRASLQRAAILSNEKYRGIRVEVSPGNLKISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ +  +      D+EV+ +L  SNSS  +R
Sbjct: 296 NPEQEEAQEEIEADTTVSDLAIGFNVNYLLDALSALR-----DEEVIIQLRDSNSSALVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + +   + +V+MP+R+
Sbjct: 351 ---------ESSSEKSRHVVMPLRL 366


>gi|299065056|emb|CBJ36217.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CMR15]
          Length = 371

 Score =  347 bits (891), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 204/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +   + TV+A  L DI+R + DG       +      +++  G S F LQ+    EF
Sbjct: 61  GAGNGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMSVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDIDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNGFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|300702376|ref|YP_003743976.1| DNA polymerase III subunit beta [Ralstonia solanacearum CFBP2957]
 gi|299070037|emb|CBJ41322.1| DNA polymerase III, beta-subunit [Ralstonia solanacearum CFBP2957]
          Length = 371

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 118/391 (30%), Positives = 205/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ N   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKNGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +   + TV+A  L DI+R + DG       +      +++  G S F LQ+    EF
Sbjct: 61  GAGNGDIATTVAARKLVDILRAMPDGEVSLTLNDK----RMSVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEANDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRHEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++ T L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRTFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|241661627|ref|YP_002979987.1| DNA polymerase III subunit beta [Ralstonia pickettii 12D]
 gi|240863654|gb|ACS61315.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12D]
          Length = 371

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 200/391 (51%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L+      +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                  + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GAGAGDIATTVAARKLVDILRAMPDGEVALTLNDK----RMTVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|187927114|ref|YP_001897601.1| DNA polymerase III subunit beta [Ralstonia pickettii 12J]
 gi|309780181|ref|ZP_07674932.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA]
 gi|187724004|gb|ACD25169.1| DNA polymerase III, beta subunit [Ralstonia pickettii 12J]
 gi|308920884|gb|EFP66530.1| DNA polymerase III, beta subunit [Ralstonia sp. 5_7_47FAA]
          Length = 371

 Score =  347 bits (890), Expect = 2e-93,   Method: Composition-based stats.
 Identities = 116/391 (29%), Positives = 200/391 (51%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L+      +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLITKQGERVSFLSTDIEIQITTHADC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                  + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GAGAGDVATTVAARKLVDILRAMPDGEVALTLNDK----RMTVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  ++     L    LK+L+   HFAMA ++IRYYLNG+   ++ +  ++ AVATD
Sbjct: 117 PTVAEATDFGARITLPQKTLKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--QVMAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V+     A       +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVETGEQPAGAGGRQEVIIPRKTILELQRLLEDVDDPVSVQLASNQVKFTFGN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L ++ 
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYRNSFTIDRAFLQQALQRTAILTTDKFKGVRCMLDTNV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y    +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELEIDYQGDALDIGFNVTYLLDVLANLKA-----EKVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D+           YV+MPMRI
Sbjct: 350 SSALITLPDDDT---------FKYVVMPMRI 371


>gi|296131552|ref|YP_003638799.1| DNA polymerase III, beta subunit [Thermincola sp. JR]
 gi|296030130|gb|ADG80898.1| DNA polymerase III, beta subunit [Thermincola potens JR]
          Length = 370

 Score =  346 bits (887), Expect = 4e-93,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 196/386 (50%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  +++++  +  A R +  KN +P+   +L++  +  L + A+  E+ I   +P +
Sbjct: 1   MKFTSNKNNMVYGVQVAQRAVSPKNPLPILSGILMKLKNNNLCLTATDLELGIECTVPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ + A  L +IVRKL D   +  F   +      + +  S   +  +   EFP 
Sbjct: 61  GSSEGSVVLPAKYLSEIVRKLPD--VLIEFSVEKENNVATLKYAQSKTTIHGYSADEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   ++ +   + KN++++  FA A +E R    G+ F +  ++L+L  VATD HR
Sbjct: 119 LPSLDGETTYVIKQELFKNMIKQVTFATAADENRPIFTGVLFEVEGDELRL--VATDTHR 176

Query: 181 LAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA+    I +     +    ++P KA+ EI+RI+  ++  VK++ S +++ + ++++ + 
Sbjct: 177 LALRIGAIGSHGYSGEKTGALIPAKALNEIVRIMPPENEEVKITFSNNQVVMELDNIRLI 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G+FPNY+ VIP     ++R+N      AV+R S+++      ++L++ +  L + 
Sbjct: 237 SRLIEGQFPNYKQVIPQGCKSKIRLNTREFLDAVERASLLAKDGSNVIRLAVQNHTLIIN 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD+G   E + +        I FN KYL++++  I +     +EV   L  S S   
Sbjct: 297 SNSPDIGTIHEELPIVLEGEETQIAFNSKYLIDVLRVIDA-----EEVFLELTGSLSPGI 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++  + D         N  Y+++P+R
Sbjct: 352 VKPVEGD---------NYLYLILPVR 368


>gi|74316020|ref|YP_313760.1| DNA polymerase III subunit beta [Thiobacillus denitrificans ATCC
           25259]
 gi|74055515|gb|AAZ95955.1| DNA polymerase III, beta chain [Thiobacillus denitrificans ATCC
           25259]
          Length = 367

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 120/384 (31%), Positives = 218/384 (56%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I  ER+ +L  L     ++ER++T+P+  ++LL+   G L + A+  E++++  + A   
Sbjct: 4   IQSERNALLSALSAVVGVVERRHTLPILSNLLLEKKAGTLTLLATDLELQVSTRLEAQGG 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
              +IT++A  L+DIVR L D A +    ++   ++V +S G S F LQ+ P ++FP  +
Sbjct: 64  DDFAITIAARKLFDIVRALPDSASVKLDTKD---SQVVVSAGKSRFTLQTLPAADFPRVE 120

Query: 123 EEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V +   L    LK L++   FAMA+++IRYYLNG+   ++ + L++  VATDGHRL
Sbjct: 121 TGAGVGTVVRLPQKTLKRLLQLVQFAMASQDIRYYLNGMLLVLDGQQLRV--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           + AE  + A       +I+PRK V E+ ++LS  D  V++ +  +++ + +    +  ++
Sbjct: 179 SYAETTLDAPT-DAQEVIIPRKTVIELSKLLSDSDEPVELRIGSNQVTIMLPGTELVTKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG+FP+YQ VIP +  + L+ N   + QA+ R +I+S+ + + V+L +S + L +  +N
Sbjct: 238 VDGKFPDYQRVIPANQPRHLKANRQTVVQALQRAAILSNEKFRGVRLVMSDNTLGIVCNN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A + + V YN  P+D+ FN  YLL+ +  +++     DE+   L  +NSS+ +  
Sbjct: 298 NEQEEAADEIEVSYNGDPLDVGFNVTYLLDGLGAVNT-----DEITLSLGDANSSMLLTS 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
           +          +    YV+MPMRI
Sbjct: 353 E---------GEPGFKYVVMPMRI 367


>gi|300309348|ref|YP_003773440.1| DNA polymerase III subunit beta [Herbaspirillum seropedicae SmR1]
 gi|300072133|gb|ADJ61532.1| DNA polymerase III subunit beta protein [Herbaspirillum seropedicae
           SmR1]
          Length = 368

 Score =  345 bits (886), Expect = 6e-93,   Method: Composition-based stats.
 Identities = 114/388 (29%), Positives = 203/388 (52%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   +R  +L  L     I+ER++T+P+  ++L++ +   +   ++  E++IT     
Sbjct: 1   MQLVKTQRDTLLRPLQIVSGIVERRHTLPILANILIRKDGEKVSFLSTDIEVQITTHADV 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            S     + TV+A  L DI+R L D  ++S    N+    + +  G S F LQ+    EF
Sbjct: 61  GSGSEATATTVAARKLLDILRALPDSGEVSISLSNK---RLTVQSGKSRFALQTLAAEEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E Y     L    LK+L    HFAMA ++IRYYLNG+   +  ++  + AVATD
Sbjct: 118 PTVAQAEHYNAQVNLPQKTLKHLFNMVHFAMAQQDIRYYLNGLLLVVEGKN--VIAVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +V+      +   +I+PRK + E+ R+L   D  V++ ++ +++ L    + +
Sbjct: 176 GHRLAFCQVETEEDFPRQE-VIIPRKTIIELQRLLDDSDEEVQLQIANNQVKLTFADIEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP+Y  V+P        ++   L +++ R +IM+S + + V+  ++   L +
Sbjct: 235 ISKLVEGKFPDYTRVVPKGYKNSFTISRDQLLRSLQRAAIMTSDKFKGVRWVIAPGSLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N D  +A+E + + Y    +DI FN  YLL++++N+      +D V   L  +NSS 
Sbjct: 295 SSTNADQEEAVEELEIDYGGDTVDIGFNVSYLLDVLNNLK-----NDYVNIALGDANSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D           +  YV+MPMRI
Sbjct: 350 LITIPDN---------ADFKYVVMPMRI 368


>gi|240950076|ref|ZP_04754378.1| DNA polymerase III subunit beta [Actinobacillus minor NM305]
 gi|240295451|gb|EER46206.1| DNA polymerase III subunit beta [Actinobacillus minor NM305]
          Length = 367

 Score =  345 bits (885), Expect = 8e-93,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AIP 58
           M  T+ R  +++ L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MLFTITREQLIKPLQQVCGVLSSRPTLPVIANLLLEVEGDRLLMTGTDLEVELTTEARLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             VD     T+ A    DI R L + + IS   E +   +  +  G S F L + P S++
Sbjct: 61  QEVDFSEKFTIPAKKFLDISRSLPEDSLISMSFEED---KAILKAGRSKFSLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  +      F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++A   S+IVPRKAV E+ R++S+    V++ +  S I +++  +  +
Sbjct: 176 HRLAVCTMALTQELA-SHSVIVPRKAVLELSRLVSANHDIVRLEIGSSNIRISMNGIVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L  +   L++A+ R +I+S+ + + V+LSL+ + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLNDNVLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  Y+L++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D ++           YV+MPMR+
Sbjct: 350 IEDCDNNTAE---------YVIMPMRL 367


>gi|330814958|ref|YP_004358663.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3]
 gi|327367351|gb|AEA58707.1| DNA polymerase III, beta subunit [Burkholderia gladioli BSR3]
          Length = 368

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 198/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+      +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGEQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +  ++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I         +IVPRK + E+ R+L   D +VK+ +++++       + +
Sbjct: 175 GHRLAYSSMKIEGGAFPRQEVIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDNIEVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|330994265|ref|ZP_08318193.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1]
 gi|329758732|gb|EGG75248.1| DNA polymerase III subunit beta [Gluconacetobacter sp. SXCC-1]
          Length = 380

 Score =  344 bits (884), Expect = 1e-92,   Method: Composition-based stats.
 Identities = 145/390 (37%), Positives = 214/390 (54%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R  +L+ L H   + E++NTIP+  +VL+   DG + + A+  EI +   + A 
Sbjct: 7   MKLKADRVTLLKALAHIQSVAEKRNTIPILANVLINVVDGAMTLTATDMEIAVVEGVAAE 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++T  A +LY+IVRKL DGAQ+           + +  G     L      +FPS
Sbjct: 67  TQRDGAVTAPAAVLYEIVRKLPDGAQVELDHAGGDAP-LGLRAGRFATSLNVLDVDDFPS 125

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
                  + F + + VL+ L++RT FA++TEE RYYLNGIF H+ E +    L AVATDG
Sbjct: 126 MMAGALPHEFSMPAQVLRGLIDRTRFAISTEETRYYLNGIFLHVAEGETGPVLRAVATDG 185

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E ++ A  A MP +IVPRK V E+ ++L      V V+LS++RI  +I +++++
Sbjct: 186 HRLARVETELPAGSAGMPGVIVPRKTVAELRKLLDEGPEQVAVALSDTRIQFSIGNITLT 245

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP  NDK LRV       AV RV+ +S  R + VKLS+  + L ++
Sbjct: 246 SKLIDGTFPEYERVIPHGNDKILRVGKKIFSDAVSRVAAISQERSRPVKLSMGHNLLTLS 305

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             + D G A E ++   V Y   P++I F  +YL +I D +        EV F    S++
Sbjct: 306 AASQDQGTATEELDENHVSYAASPIEIGFQARYLNDITDQVER------EVEFAFSDSSA 359

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R  D  S         A YVLMPMR+
Sbjct: 360 PTIVRDVDSPS---------ALYVLMPMRV 380


>gi|257464819|ref|ZP_05629190.1| DNA polymerase III subunit beta [Actinobacillus minor 202]
 gi|257450479|gb|EEV24522.1| DNA polymerase III subunit beta [Actinobacillus minor 202]
          Length = 367

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA--IP 58
           M  T+ R  +L  L   C ++  + T+PV  ++LL+     L +  +  E+E+T    + 
Sbjct: 1   MLFTITREQLLRPLQQVCGVLASRPTLPVIGNLLLEVEGERLSMTGTDLEVELTTQAQLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V+     T+ A    DI + L D + IS   E +   +  I  G S F L + P S++
Sbjct: 61  QAVNFSEKFTIPAKKFLDIAKSLPDDSVISIAFEAD---KAVIKAGRSKFSLATLPASDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  +      F +  S L  L++ T F+MA ++ RY+LNG+ F      L+   VATDG
Sbjct: 118 PNLMDWTPEVDFSIEQSTLARLIDATQFSMANQDARYFLNGMKFETEGNLLR--TVATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLAV  + +  ++A   S+IVPRKAV E+ R++S+    V++ +  S I +++  +  +
Sbjct: 176 HRLAVCTMALTQELA-SHSVIVPRKAVLELSRLVSTSHDIVRLEIGSSNIRISMNGIVFT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y+ V+P + D+ L  +   L++A+ R +I+S+ + + V+LSLS + L +T
Sbjct: 235 SKLIDGRFPDYRRVLPRNADRILEADTETLKRALMRAAILSNEKFRGVRLSLSDNILKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP+  +A E ++V Y    M++ FN  Y+L++++ +       + V F L  ++SS  
Sbjct: 295 ANNPEQEEAEEIIDVAYQSPAMEVGFNVSYVLDVLNTLKC-----ERVRFSLVDASSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D ++           YV+MPMR+
Sbjct: 350 IEDCDNNTAE---------YVIMPMRL 367


>gi|237747156|ref|ZP_04577636.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS]
 gi|229378507|gb|EEO28598.1| DNA polymerase III subunit beta [Oxalobacter formigenes HOxBLS]
          Length = 368

 Score =  344 bits (882), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 115/381 (30%), Positives = 207/381 (54%), Gaps = 22/381 (5%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCG 65
           R ++L  L     I+ER++T+P+  ++L++     +   ++  EI+I       + +   
Sbjct: 8   RDNLLRPLQIVSGIVERRHTLPILANILIRKEGNAVSFLSTDTEIQIVTHAEIGTAEEDA 67

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124
           + TV+A  L DI+R L D A+I+    ++    + +S G S F LQ+ P ++FP+  +  
Sbjct: 68  TTTVAARKLLDILRALPDSAEIAISLNDK---RLVVSAGKSRFSLQTLPAADFPTVSQPL 124

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           EY  S  L+   LKNL+   +FAMA ++IRYYLNG+        +K  AVATDGHRLA  
Sbjct: 125 EYQTSVTLSQKSLKNLLGMVYFAMAQQDIRYYLNGLLLQTGGNTIK--AVATDGHRLAFC 182

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           +++   + +    +I+PRK + E+ R+L   +  V++ +S +++      + +  +L++G
Sbjct: 183 QMETEQEFSNN-DVIIPRKTILELQRLLEESEEPVRIDISGAQVRFVFGDVELISKLVEG 241

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
           +FP+Y  VIP     +  ++   L++A+ R +IM+S + + ++  L+   L ++  N D 
Sbjct: 242 KFPDYTRVIPKGYKNKFTISRELLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
            +AIE + + Y+   +DI FN  YLL+++ N+      +DE+   L  +NSS  +   D 
Sbjct: 302 EEAIEEIELDYDGDNIDIGFNVTYLLDVLGNLK-----NDEISIELGDANSSALMSVPDN 356

Query: 365 DSKNNKDNKVNAFYVLMPMRI 385
                     +  YV+MPMRI
Sbjct: 357 ---------TDFKYVVMPMRI 368


>gi|171316344|ref|ZP_02905564.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5]
 gi|171098473|gb|EDT43275.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MEX-5]
          Length = 368

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|325528072|gb|EGD05284.1| DNA polymerase III subunit beta [Burkholderia sp. TJI49]
          Length = 368

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|254251051|ref|ZP_04944369.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158]
 gi|124893660|gb|EAY67540.1| DNA polymerase sliding clamp subunit [Burkholderia dolosa AUO158]
          Length = 368

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 200/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++    ++    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|107024099|ref|YP_622426.1| DNA polymerase III subunit beta [Burkholderia cenocepacia AU 1054]
 gi|116688026|ref|YP_833649.1| DNA polymerase III subunit beta [Burkholderia cenocepacia HI2424]
 gi|170731358|ref|YP_001763305.1| DNA polymerase III subunit beta [Burkholderia cenocepacia MC0-3]
 gi|206558824|ref|YP_002229584.1| DNA polymerase III subunit beta [Burkholderia cenocepacia J2315]
 gi|105894288|gb|ABF77453.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia AU 1054]
 gi|116646115|gb|ABK06756.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia HI2424]
 gi|169814600|gb|ACA89183.1| DNA polymerase III, beta subunit [Burkholderia cenocepacia MC0-3]
 gi|198034861|emb|CAR50733.1| DNA polymerase III, beta chain [Burkholderia cenocepacia J2315]
          Length = 368

 Score =  343 bits (881), Expect = 2e-92,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQIATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|134294130|ref|YP_001117865.1| DNA polymerase III subunit beta [Burkholderia vietnamiensis G4]
 gi|134137287|gb|ABO53030.1| DNA polymerase III, beta subunit [Burkholderia vietnamiensis G4]
          Length = 368

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFAASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKIEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGGVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|296446087|ref|ZP_06888036.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
 gi|296256446|gb|EFH03524.1| DNA polymerase III, beta subunit [Methylosinus trichosporium OB3b]
          Length = 371

 Score =  343 bits (881), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 143/387 (36%), Positives = 224/387 (57%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++R+ +L+ L    RI E++ TIP+  H LL+ + G L I+A+  +IE    + A 
Sbjct: 1   MKLTIDRAPLLKALETTRRIAEQRTTIPILSHALLETDHGRLCIRATDLDIETRILLDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ VSA +L+D+ RKL + AQI+   E +   ++ +  G S F L + P   FP 
Sbjct: 61  IAETGALAVSAAVLHDLTRKLPEKAQIT--LEGQEAGQLQMRSGRSRFKLSTLPADTFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
           T E  +   F L ++ L  ++ +T FA++TEE RYYLNG+FFH  E+D +  L  VATDG
Sbjct: 119 TTEHGFSADFALPAATLARMLGKTAFAISTEETRYYLNGVFFHHMEDDGRALLRMVATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+  E +  A  A MP +IVPRKA  EI R+L  +++  ++++S +++  ++  +++S
Sbjct: 179 HRLSRIETEAPAGAAAMPGVIVPRKACAEIERLLKGQEAEARLAVSANKLRFSLGDVTLS 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP+Y  VIP  NDK   ++ T +  A DRVS + S R +AVKLS  +  L ++
Sbjct: 239 TKLIDGTFPDYARVIPQGNDKRATLDRTAMAAAADRVSTIHSERGRAVKLSFDASALTLS 298

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V NPDMG+A + M   Y+  P++I FN +YL E +  +       D  V RL    +   
Sbjct: 299 VTNPDMGEARDEMEADYDSSPIEIGFNSRYLAEALQVLEG-----DSAVIRLADPGAPTL 353

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +            + +   VLMPMR+
Sbjct: 354 FQSA---------TQPDLLIVLMPMRV 371


>gi|152980594|ref|YP_001351692.1| DNA polymerase III subunit beta [Janthinobacterium sp. Marseille]
 gi|151280671|gb|ABR89081.1| DNA polymerase III beta subunit [Janthinobacterium sp. Marseille]
          Length = 368

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   +R  +L  L     I+ER++T+P+  ++L++ +   +   ++  E++IT     
Sbjct: 1   MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            S +   S TV+A  L DI+R L D   +S    N+    + +  G S F LQ+    EF
Sbjct: 61  GSGNDVASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E Y     L    LK+L    HF+MA ++IRYYLNG+   ++ ++  + AVATD
Sbjct: 118 PTVAQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKN--VIAVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +V    +  +   +I+PRK + E+ R+L   D  V + ++ +++ L    + +
Sbjct: 176 GHRLAFCQVATEQEFPRQE-VIIPRKTIIELQRLLEENDQPVDLEIANNQVKLTFGDIEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP+Y  V+P        +    L +++ R +IM+S + + V+  +S   + +
Sbjct: 235 ISKLVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N D  +A+E + + Y    +DI FN  YLL++++N+       D +   L  +NSS 
Sbjct: 295 SSTNADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DSINIALGDANSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D           +  YV+MPMRI
Sbjct: 350 LITVPDNP---------DFKYVVMPMRI 368


>gi|134093296|ref|YP_001098371.1| DNA polymerase III subunit beta [Herminiimonas arsenicoxydans]
 gi|133737199|emb|CAL60242.1| DNA polymerase III, beta subunit [Herminiimonas arsenicoxydans]
          Length = 368

 Score =  343 bits (880), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 115/388 (29%), Positives = 202/388 (52%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   +R  +L  L     I+ER++T+P+  ++L++ +   +   ++  E++IT     
Sbjct: 1   MQLVKTQRDALLRPLQIVSGIVERRHTLPILANILIRKDGERVSFLSTDIEVQITTHAQV 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            S +   S TV+A  L DI+R L D   +S    N+    + +  G S F LQ+    EF
Sbjct: 61  GSGNEIASTTVAARKLLDILRALPDSGDVSLTLANK---RMTVQSGKSRFALQTLAAEEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E Y     L    LK+L    HF+MA ++IRYYLNG+   ++ ++  + AVATD
Sbjct: 118 PTVAQAEQYNAKVTLPQKTLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKN--VIAVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA  +V    + A+   +I+PRK + E+ R+L   D  V + ++ S++ L    + +
Sbjct: 176 GHRLAFCQVATEQEFARQE-VIIPRKTIIELQRLLEDTDQPVDLEIANSQVKLTFGDIEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP+Y  V+P        +    L +++ R +IM+S + + V+  +S   + +
Sbjct: 235 ISKLVEGKFPDYTRVVPKGYKNNFTIGRDALLRSLQRAAIMTSDKFKGVRCIMSPGSMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N D  +A+E + + Y    +DI FN  YLL++++N+       D +   L  +NSS 
Sbjct: 295 SSTNADQEEAVEEIEIDYGGDSVDIGFNVTYLLDVLNNLKG-----DNINIALGDANSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D           +  YV+MPMRI
Sbjct: 350 LITVPDNP---------DFKYVVMPMRI 368


>gi|167589704|ref|ZP_02382092.1| DNA polymerase III subunit beta [Burkholderia ubonensis Bu]
          Length = 368

 Score =  342 bits (879), Expect = 3e-92,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGADVSFLSTDLELQITTRADF 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V +   + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGNDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGASLSVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKIEGGAFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|239813021|ref|YP_002941931.1| DNA polymerase III, subunit beta [Variovorax paradoxus S110]
 gi|239799598|gb|ACS16665.1| DNA polymerase III, beta subunit [Variovorax paradoxus S110]
          Length = 368

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L  L     I+ER++T+P+  +VL++   G L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAALQSVAGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + T+ A  L DI+R +     +S        +++ +  G S F LQS P  +FP  
Sbjct: 64  EGNFTTTIGARKLIDILRTMPADQTVSLES---SASKLVLKGGKSRFTLQSLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +    LK+L+ +  FAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +  ++ +   +I+PRK V E+ R+LS  + ++++  + ++   +   +    +
Sbjct: 179 LAFSSATLDVEVPRQE-VILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A + +++ Y    ++I FN  YL++ + N+       D V   L  SNSS  + 
Sbjct: 298 NAEQEEAQDELDIDYGGDAIEIGFNVTYLIDALSNMD-----QDMVKLDLADSNSSALLT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +           +  YV+MPMRI
Sbjct: 353 IPEN---------ASFKYVVMPMRI 368


>gi|78064660|ref|YP_367429.1| DNA polymerase III subunit beta [Burkholderia sp. 383]
 gi|115350058|ref|YP_771897.1| DNA polymerase III subunit beta [Burkholderia ambifaria AMMD]
 gi|170697755|ref|ZP_02888842.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10]
 gi|172059069|ref|YP_001806721.1| DNA polymerase III subunit beta [Burkholderia ambifaria MC40-6]
 gi|77965405|gb|ABB06785.1| DNA polymerase III, beta subunit [Burkholderia sp. 383]
 gi|115280046|gb|ABI85563.1| DNA polymerase III, beta subunit [Burkholderia ambifaria AMMD]
 gi|170137370|gb|EDT05611.1| DNA polymerase III, beta subunit [Burkholderia ambifaria IOP40-10]
 gi|171991586|gb|ACB62505.1| DNA polymerase III, beta subunit [Burkholderia ambifaria MC40-6]
          Length = 368

 Score =  342 bits (879), Expect = 4e-92,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGATLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + +         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKLEGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + +            YV+MPMRI
Sbjct: 350 LITVPENEE---------FKYVVMPMRI 368


>gi|149925375|ref|ZP_01913639.1| DNA polymerase III subunit beta [Limnobacter sp. MED105]
 gi|149825492|gb|EDM84700.1| DNA polymerase III subunit beta [Limnobacter sp. MED105]
          Length = 368

 Score =  342 bits (878), Expect = 5e-92,   Method: Composition-based stats.
 Identities = 122/388 (31%), Positives = 208/388 (53%), Gaps = 23/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  ++  L     I+ER+NT+PV  ++LL+   GLL + +S  E++I  +   
Sbjct: 1   MELIHSSRDALVRKLQIVSNIVERRNTLPVLANILLKKQGGLLTLLSSDIEMQIETSAEV 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                  + TV+A    DI+R L + + +    +   G ++++    S F LQ+ P  +F
Sbjct: 61  GAGGEDTATTVAARKFLDILRSLPEDSDVMVKLD---GKKMSVQAKKSRFALQTLPAEDF 117

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P  +E  E+V    L   +LKNL+   HF+MA +++RYYLNG+   I  E   + AVATD
Sbjct: 118 PLVQEPKEWVTQISLPQKMLKNLLGMVHFSMAQQDLRYYLNGVLLVI--ESACVRAVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA A+       AK   +I+PRK V E+ R+L+  D +V + L+ ++       +++
Sbjct: 176 GHRLAYADAPGQGGTAK-HEVIIPRKTVLELSRLLNDTDDTVTIDLASNQAKFTFSDITL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP+YQ VIP ++   + +    L  ++ R SI++S + + ++  L ++ L +
Sbjct: 235 ITKLVEGKFPDYQRVIPKTHQHHVVIARDALLHSLQRASILTSDKFRGIRWVLGANGLTI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +N D  +A + M V Y    +D+ FN  YLL++++N+ S     + V F L   NSS 
Sbjct: 295 VANNSDQEEARDEMEVEYQGPEIDVGFNVNYLLDVLNNLKS-----ETVQFTLQDGNSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +    KD         +  YV+MPMRI
Sbjct: 350 LVTTPGKD---------DFKYVVMPMRI 368


>gi|161523182|ref|YP_001578194.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|189348957|ref|YP_001944585.1| DNA polymerase III subunit beta [Burkholderia multivorans ATCC
           17616]
 gi|221201813|ref|ZP_03574850.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M]
 gi|221207681|ref|ZP_03580689.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2]
 gi|221214573|ref|ZP_03587543.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1]
 gi|56798247|dbj|BAD82890.1| DnaN [Burkholderia multivorans]
 gi|160340611|gb|ABX13697.1| DNA polymerase III, beta subunit [Burkholderia multivorans ATCC
           17616]
 gi|189332979|dbj|BAG42049.1| DNA polymerase III, beta chain [Burkholderia multivorans ATCC
           17616]
 gi|221165463|gb|EED97939.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD1]
 gi|221172527|gb|EEE04966.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2]
 gi|221178233|gb|EEE10643.1| DNA polymerase III, beta subunit [Burkholderia multivorans CGD2M]
          Length = 368

 Score =  342 bits (877), Expect = 7e-92,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGSDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGASLTVPQKSFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I         +IVPRK + E+ R+L   D +V + +++++       + +
Sbjct: 175 GHRLAFSSMKIDGGTFGRQEVIVPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++    ++    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFQIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITVPENDE---------FKYVVMPMRI 368


>gi|310817862|ref|YP_003950220.1| DNA polymerase III subunit beta [Stigmatella aurantiaca DW4/3-1]
 gi|309390934|gb|ADO68393.1| DNA polymerase III, beta subunit [Stigmatella aurantiaca DW4/3-1]
          Length = 368

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 204/386 (52%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +   ++ + L  A  I+ERK T+P+  +VL+ A    + + A   +I +    PA 
Sbjct: 1   MEFRIAADELKKALYRAQGIVERKTTMPILANVLVNATKSGVTVTAFDLDIGVVSEHPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T++A  ++DIV+ L D         N     V+I+ G ++F +      E+P 
Sbjct: 61  VSKPGAVTLNAKYIFDIVQNLPDAQVTLKKLANNY---VDIASGSAHFKIVGMAAEEYPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +EE     +++ + L  ++++T FA++++E RY LNG++F   +   K+  VATDGHR
Sbjct: 118 LPKEENAPLVQVSGNTLLEMIKKTQFAISSDETRYILNGVYFEP-QSGGKVRMVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E ++         +I+PRK + E+ R+L    D+   +  +E+        L+M +
Sbjct: 177 LALIERELNGDFKLKGGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG+FP YQ VIP   +K + V+     + + R++++S+ +  AV++ L  +KL +T 
Sbjct: 237 RLIDGQFPEYQRVIPKEGEKVVLVSKVRFLEGLKRIALLSADKSYAVRIGLEQNKLLITS 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NPD+G+A +++ + Y    + I FN +YL++++    +     DEV F L   +S   +
Sbjct: 297 NNPDLGEARDALEIAYRGGDITIGFNARYLIDVLTVTET-----DEVSFELGDEHSPGVL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +   V+MPMR+
Sbjct: 352 HAP---------GDRSFTAVVMPMRV 368


>gi|118594215|ref|ZP_01551562.1| DNA polymerase III, beta subunit [Methylophilales bacterium
           HTCC2181]
 gi|118439993|gb|EAV46620.1| DNA polymerase III, beta subunit [Methylophilales bacterium
           HTCC2181]
          Length = 367

 Score =  341 bits (876), Expect = 8e-92,   Method: Composition-based stats.
 Identities = 111/387 (28%), Positives = 217/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           M I + R  +L+ L +   I+E+++ +P+  ++LL+  ++  L+  A+  E++IT     
Sbjct: 1   MNIKINRDVLLKPLSNVSGIVEKRHALPILSNLLLEGQDNNSLKFTATDLEVQITLNAKT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V    SIT++A  L+DI R L +G+ I    E    ++V +  G S F LQ+ P  ++P
Sbjct: 61  EVPTDFSITIAARKLFDITRSLPEGSTIDLQVEE---SKVVLKAGKSKFNLQTLPAKDYP 117

Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             K  EE      +  + LK ++++  F+MA ++IRYYLNG+ F ++ +  KL  V TDG
Sbjct: 118 VMKLSEEEKKLIRVPQNQLKAILKQVDFSMAQQDIRYYLNGLLFEVDGK--KLNIVGTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+   +++     K    I+PRK + E++++L      V++ L++++ + + + +++ 
Sbjct: 176 HRLSFTSLELKEPQEK-FQTIIPRKTILELIKLLDETAEEVEIQLTKNQAYFSFQEINLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  ++ +  ++ T L  ++ R SI+S+ + + +++ +   +L + 
Sbjct: 235 SKVIDGKFPDYHRVIPVGHENKFDIDRTQLLLSMQRASILSNEKYRGIRMVIEKSQLKLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +N +  +A E +++ Y+   +DI FN  YL++++ NI +     +++ F  + S+SS  
Sbjct: 295 SNNSEQEQAEEELDITYDGPSIDIGFNVTYLIDVLTNIQA-----EKLSFAFNDSSSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     D         +  YV+MPMRI
Sbjct: 350 ITIPKND---------DYKYVVMPMRI 367


>gi|121607000|ref|YP_984329.1| DNA polymerase III subunit beta [Polaromonas naphthalenivorans CJ2]
 gi|120595969|gb|ABM39408.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans
           CJ2]
          Length = 368

 Score =  341 bits (876), Expect = 9e-92,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 200/385 (51%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +   L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKFLGVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTTAELDGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L D++R +     +S         ++ +  G S F LQ+ P  +FP  
Sbjct: 64  EGDFTTTVGARKLIDVLRSMPSDQTVSLES---AQNKLILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +   VLK L+ +  FAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAASFGPVFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +  ++ K   +I+PRK V E+ R+LS K+ ++++  + ++   + E +    +
Sbjct: 179 LAFSSATLDVEVPKQE-VILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHKNIITLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y+   ++I FN  YL++ ++N++      D V   L  SNSS  + 
Sbjct: 298 NAEQEEAVDELDIDYDGDAIEIGFNVTYLIDALNNMN-----QDMVKIELADSNSSALLT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D  +           YV+MPMRI
Sbjct: 353 IPDNAA---------FKYVVMPMRI 368


>gi|171913560|ref|ZP_02929030.1| DNA polymerase III subunit beta [Verrucomicrobium spinosum DSM
           4136]
          Length = 365

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 114/385 (29%), Positives = 190/385 (49%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   L  L     ++  + T+P+  +VL++A +G L+   +  ++ I+G + A 
Sbjct: 1   MKFSISKEAFLTALQQVQHVVSTRTTLPILSNVLIKAGNGQLQFVTTDLDVGISGTVAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ T+ A  L  I+R+L          E  +    +I  G S F +      EFP 
Sbjct: 61  VEEAGATTLPARKLVSIIRELPSDEVEVTVDERNVA---HIRSGPSFFKVMGLAADEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F+L   VLK+ + +T +A++T+E RY LNGI     E    L  VATDG R
Sbjct: 118 LPTFSDAREFKLEQRVLKDCLRKTSYAISTDETRYVLNGILCSFKEN--MLTMVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    +    II+P KAV EI R+L   +  V + +   +I  ++    ++ +
Sbjct: 176 LAMVEQELEFPQSNEVDIIIPTKAVNEIQRLLED-EGEVTLKVGSGQIAFDLGDFFLASK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G +PNY+ VIP    + + ++   L + + R S++ S +  +VKL L+ D L +  +
Sbjct: 235 LIEGNYPNYRQVIPGEARERIALDREPLLRTLGRTSLLLSDKSNSVKLHLTKDNLEVVAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            PD+G+A ES+ + Y    M I FN ++ +  + N+     V DEV   L    S   +R
Sbjct: 295 APDVGEARESVAINYKGAEMTIAFNPEFFMAPLRNL-----VSDEVYLHLIDEISPGVLR 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                         N  YVLMPMR+
Sbjct: 350 S-----------GTNFLYVLMPMRV 363


>gi|319790696|ref|YP_004152336.1| DNA polymerase iii, beta subunit [Variovorax paradoxus EPS]
 gi|315593159|gb|ADU34225.1| DNA polymerase III, beta subunit [Variovorax paradoxus EPS]
          Length = 368

 Score =  341 bits (875), Expect = 1e-91,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L  L     I+ER++T+P+  +VL++   G L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAALQSVSGIVERRHTLPILANVLIRKTGGQLQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + T+ A  L DI+R +     +S        +++ +  G S F LQS P  +FP  
Sbjct: 64  EGNFTTTIGARKLIDILRTMPADQTVSLES---SASKLVLKGGKSRFTLQSLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +    LK+L+ +  FAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAANFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +  ++ +   +I+PRK V E+ R+LS  + ++++  + ++   +   +    +
Sbjct: 179 LAFSSAMLDVEVPRQE-VILPRKTVLEMQRLLSDAEGAIEMQFANNQAKFSFGGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHKNTVTLGRAPLLASLQRTAILTSEKFKGVRLNIEPGTLRIASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A + +++ Y    ++I FN  YL++ + N+       D V   L  SNSS  + 
Sbjct: 298 NAEQEEAQDELDIDYGGDAIEIGFNVTYLIDALSNMD-----QDMVKLDLADSNSSALLT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             +           +  YV+MPMRI
Sbjct: 353 IPEN---------ASFKYVVMPMRI 368


>gi|226225408|ref|YP_002759514.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27]
 gi|226088599|dbj|BAH37044.1| DNA polymerase III beta subunit [Gemmatimonas aurantiaca T-27]
          Length = 370

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 195/385 (50%), Gaps = 17/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R  + E L      +  K T+PV  ++L++  D  +   A+  +I ++  + A 
Sbjct: 1   MKFTISREKLQEGLQAVTAAVPAKTTLPVLANLLVETTDRGIRFSATDLDIAVSTEVSAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+IT+ A  L +I R+L            +    V +  G S F L   P  EFP+
Sbjct: 61  VETPGAITIPAKKLGEIARELPPSPVKISASGEQ---RVTLECGRSKFKLLGLPRDEFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                +  S+ + S  L+ L+  T FA++ EE R  LNG+ + + EE  ++  VAT+GHR
Sbjct: 118 FPSVRFNDSWRVKSGELQKLISHTAFAVSNEESRPILNGVLWELREE--RMRMVATNGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E+ + A  A    +IVP KA+ +I R+  +++  ++++  ++ +       S+  R
Sbjct: 176 LAKMELPVEASSAPPGDLIVPPKALEQIRRLFPAEEE-LEIARGDNHLGFRSPFTSVFTR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G +PNY+ VIP  ND+    +   L  A+ R+S+++S +   +K+S +S  L  +V 
Sbjct: 235 LVEGPYPNYEQVIPKDNDRYALADKAALTSALKRMSVIASDQTHRIKMSFNSGMLKFSVT 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            PD+G+A + + + Y    +DI FN  YLLEI+  + +     ++V     +   +  I 
Sbjct: 295 TPDLGEASDELPINYTGDQLDIGFNATYLLEILRFMPT-----EQVRLTFKAPERAATIE 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +        D+      ++MP+R+
Sbjct: 350 PE------GWDDPAKYLCLVMPLRL 368


>gi|88813025|ref|ZP_01128267.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231]
 gi|88789658|gb|EAR20783.1| DNA polymerase III subunit beta [Nitrococcus mobilis Nb-231]
          Length = 366

 Score =  341 bits (874), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 128/385 (33%), Positives = 205/385 (53%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  VER+ +L+ L     ++ER+ T+P+  ++LL A +  L I A+  E+EI     A 
Sbjct: 1   MEFDVERTALLKALQSIIGVVERRQTLPILANILLDAREQRLAITATDLEVEIQAHAQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G  T+ A  L DIVR L + A I     ++    + +    S F L + P  +FP+
Sbjct: 61  LSQAGETTLPARKLMDIVRNLPEHADIHVSTSHD---RIALQLPHSRFTLATLPTKDFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E       EL  S L+ L++RT FAMA +++RYYLNG+   +    L+  AVATDGHR
Sbjct: 118 VEEIGQTQDLELTQSHLRWLIDRTGFAMALQDVRYYLNGLLLELEPYCLR--AVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AEV     + +   +IVPRK + E+LR+L+  D  +++ L ++ I +    +  + +
Sbjct: 176 LALAEVVTELPLTETKQVIVPRKGIQELLRLLTDSDEPLRLELGDNHIRVTWPEVRFTTK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+DG+FP+YQ VIP  N   L+V    LRQA+ R +I+S+  +  V+  L    L +  +
Sbjct: 236 LLDGQFPSYQRVIPKQNGGCLQVERHTLRQALIRAAILSNEHLHGVRFILGGTSLRICSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP   +A E +   Y+    +I FN  YLL+ +  I      +  V   L ++NSS  +R
Sbjct: 296 NPAQEEAEEELTAAYDGEAFEIGFNASYLLDALAAIE-----ESTVEIFLTNANSSALLR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G   +            YV+MP+R+
Sbjct: 351 GAGNE---------RCRYVVMPLRL 366


>gi|108761971|ref|YP_628517.1| DNA polymerase III subunit beta [Myxococcus xanthus DK 1622]
 gi|108465851|gb|ABF91036.1| DNA polymerase III, beta subunit [Myxococcus xanthus DK 1622]
          Length = 368

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 204/386 (52%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +   ++ + L  A  I+ERK T+P+  +VL+ AN G + + A   +I +    PA 
Sbjct: 1   MEFRIAADELKKALYRAQGIVERKTTMPILANVLVTANKGGITVTAFDLDIGVVSEHPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T+SA  ++DIV+ L D         N     V+IS G ++F +      E+P 
Sbjct: 61  VIKTGAVTLSAKYVFDIVQNLPDAQVTLKKLANNY---VDISSGSAHFKIVGMAAEEYPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +EE     ++  + L  ++++T FA++++E RY LNG+FF   +   K+  VATDGHR
Sbjct: 118 LPKEENAPLVQVGGNTLLEMIKKTQFAISSDETRYILNGVFFEP-QSTGKVRMVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E ++         +I+PRK + E+ R+L    D+   +  +E+        L+M +
Sbjct: 177 LALVERELPGDFKLKSGVIIPRKGLMELKRLLDEAPDAECHLGFAENSALFKKPGLTMVM 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG+FP YQ VIP   +K + V    L +++ R++++S+ +  AV++ L  ++L +T 
Sbjct: 237 RLIDGQFPEYQRVIPKEGEKIVLVPKVRLLESLKRIALLSADKSNAVRIGLEENQLIITA 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            NPD+G+A + + + Y    + I FN +YL++++    +     DEV F L   +S   +
Sbjct: 297 SNPDLGEAKDVLELAYRGNGITIGFNARYLMDVLAVTET-----DEVSFELGDEHSPGVL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +   V+MPMR+
Sbjct: 352 HAP---------GDRSFTAVVMPMRV 368


>gi|237749315|ref|ZP_04579795.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13]
 gi|229380677|gb|EEO30768.1| DNA polymerase III subunit beta [Oxalobacter formigenes OXCC13]
          Length = 368

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 112/381 (29%), Positives = 204/381 (53%), Gaps = 22/381 (5%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCG 65
           R ++L  L     I+ER++T+P+  ++L++     +   ++  EI+I       + +   
Sbjct: 8   RDNLLRPLQIVSGIVERRHTLPILANILIRKEGEAVSFLSTDTEIQIVTHAEIGTNEENT 67

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE- 124
           + TV+A  L DI+R L D + I+  + ++    + +  G S F LQ+ P  +FP   +  
Sbjct: 68  TTTVAARKLLDILRALPDTSDIAISQNDK---RLVVQAGKSRFSLQTLPADDFPIVSQPA 124

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           EY  S  ++   LKNL+   +F+MA ++IRYYLNG+   ++    K+ AVATDGHRLA  
Sbjct: 125 EYETSVTVSQKALKNLLGMVYFSMAQQDIRYYLNGLLLQVDGN--KMTAVATDGHRLAFC 182

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           +++   + +K   +I+PRK + E+ R+L   D  V++  S  ++      + +  +L++G
Sbjct: 183 QMETDQEFSKN-DVIIPRKTILELQRLLEDSDEPVRIDFSGGQVRFVFGDVELISKLVEG 241

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDM 304
           +FP+Y  VIP     +  ++   L++A+ R +IM+S + + ++  L+   L ++  N D 
Sbjct: 242 KFPDYTRVIPKGYKNKFTLSREQLQRALQRAAIMTSDKFKGIRCILAPGSLKISSTNADQ 301

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
            +AIE + + Y    +DI FN  YLL+++ N+      +++V   L  +NSS  +   D 
Sbjct: 302 EEAIEEIELDYGGDSIDIGFNVTYLLDVLGNLK-----NEQVSVELGDANSSALVSVPDN 356

Query: 365 DSKNNKDNKVNAFYVLMPMRI 385
                     +  YV+MPMRI
Sbjct: 357 ---------SDFKYVVMPMRI 368


>gi|238025686|ref|YP_002909917.1| DNA polymerase III subunit beta [Burkholderia glumae BGR1]
 gi|237874880|gb|ACR27213.1| DNA polymerase III, beta subunit [Burkholderia glumae BGR1]
          Length = 368

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 106/388 (27%), Positives = 196/388 (50%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+      +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKTGSDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGEQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +  ++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I         +IVPRK + E+ R+L   D  V + +++++       + +
Sbjct: 175 GHRLAYSSMKIDGGTFPRQEVIVPRKTILELQRLLEDIDDVVNIDIAQTQAKFTFGQVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 235 VSKLVEGKFPDFQRVIPKAHKNTFTIGREELQRSLQRAAILTSDKFKGVRCIVAPGQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       + +   L  ++SS 
Sbjct: 295 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VENIQVSLGDASSSA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 350 LITIPEIDE---------FKYVVMPMRI 368


>gi|148260438|ref|YP_001234565.1| DNA polymerase III subunit beta [Acidiphilium cryptum JF-5]
 gi|146402119|gb|ABQ30646.1| DNA polymerase III, beta subunit [Acidiphilium cryptum JF-5]
          Length = 374

 Score =  340 bits (873), Expect = 2e-91,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   ++E++NTIP+  +VLL   +G L I A+  EI +   + A+
Sbjct: 1   MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+T  A  LY+IVR+  D A+I           + +  G     L   P  EFP 
Sbjct: 61  TMRDGSVTAPAATLYEIVRRQPDNAEIELDHPGGDAP-LALRAGRYATKLVVLPTDEFPK 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               +  + F + +  L+ L++RT FA++TEE RYYLNGI+ H  E +    L AVATDG
Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHAAESEGVPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E  +    A MP +IVPRK V EI ++L      V ++LSE+RI   ++++ M+
Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+Y  VIP  NDK LRV   +   AV RVS ++S R + VKLS+  D L ++
Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             +PD G A E ++   V Y   P++I F  +YL ++ + I        +V F      +
Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KVEFCFADGAA 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R    +S         A +VLMPMR+
Sbjct: 354 PTLVRAAGDES---------AIFVLMPMRV 374


>gi|53717713|ref|YP_106699.1| DNA polymerase III subunit beta [Burkholderia pseudomallei K96243]
 gi|53724902|ref|YP_101863.1| DNA polymerase III subunit beta [Burkholderia mallei ATCC 23344]
 gi|67642368|ref|ZP_00441125.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4]
 gi|76811898|ref|YP_331716.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1710b]
 gi|121599744|ref|YP_994143.1| DNA polymerase III subunit beta [Burkholderia mallei SAVP1]
 gi|124384769|ref|YP_001028200.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10229]
 gi|126438733|ref|YP_001057143.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 668]
 gi|126448071|ref|YP_001079585.1| DNA polymerase III subunit beta [Burkholderia mallei NCTC 10247]
 gi|134281596|ref|ZP_01768304.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305]
 gi|167001181|ref|ZP_02266980.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20]
 gi|167717461|ref|ZP_02400697.1| DNA polymerase III subunit beta [Burkholderia pseudomallei DM98]
 gi|167736496|ref|ZP_02409270.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 14]
 gi|167813574|ref|ZP_02445254.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 91]
 gi|167822115|ref|ZP_02453586.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 9]
 gi|167843720|ref|ZP_02469228.1| DNA polymerase III subunit beta [Burkholderia pseudomallei B7210]
 gi|167892199|ref|ZP_02479601.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 7894]
 gi|167900711|ref|ZP_02487916.1| DNA polymerase III subunit beta [Burkholderia pseudomallei NCTC
           13177]
 gi|167908928|ref|ZP_02496019.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 112]
 gi|167916969|ref|ZP_02504060.1| DNA polymerase III subunit beta [Burkholderia pseudomallei BCC215]
 gi|217423948|ref|ZP_03455448.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576]
 gi|226193089|ref|ZP_03788699.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237814479|ref|YP_002898930.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|254175303|ref|ZP_04881964.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399]
 gi|254184147|ref|ZP_04890738.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655]
 gi|254186618|ref|ZP_04893135.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|254194524|ref|ZP_04900955.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13]
 gi|254201968|ref|ZP_04908332.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH]
 gi|254207300|ref|ZP_04913651.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU]
 gi|254259557|ref|ZP_04950611.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a]
 gi|254298587|ref|ZP_04966038.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e]
 gi|254359609|ref|ZP_04975880.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280]
 gi|52208127|emb|CAH34057.1| DNA polymerase III, beta chain [Burkholderia pseudomallei K96243]
 gi|52428325|gb|AAU48918.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 23344]
 gi|76581351|gb|ABA50826.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710b]
 gi|121228554|gb|ABM51072.1| DNA polymerase III, beta subunit [Burkholderia mallei SAVP1]
 gi|124292789|gb|ABN02058.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10229]
 gi|126218226|gb|ABN81732.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 668]
 gi|126240941|gb|ABO04034.1| DNA polymerase III, beta subunit [Burkholderia mallei NCTC 10247]
 gi|134247263|gb|EBA47349.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 305]
 gi|147747862|gb|EDK54938.1| DNA polymerase III, beta subunit [Burkholderia mallei FMH]
 gi|147752842|gb|EDK59908.1| DNA polymerase III, beta subunit [Burkholderia mallei JHU]
 gi|148028823|gb|EDK86755.1| DNA polymerase III, beta subunit [Burkholderia mallei 2002721280]
 gi|157808569|gb|EDO85739.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 406e]
 gi|157934303|gb|EDO89973.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei Pasteur
           52237]
 gi|160696348|gb|EDP86318.1| DNA polymerase III, beta subunit [Burkholderia mallei ATCC 10399]
 gi|169651274|gb|EDS83967.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei S13]
 gi|184214679|gb|EDU11722.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1655]
 gi|217393011|gb|EEC33033.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 576]
 gi|225934689|gb|EEH30666.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           Pakistan 9]
 gi|237506469|gb|ACQ98787.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei
           MSHR346]
 gi|238523507|gb|EEP86945.1| DNA polymerase III, beta subunit [Burkholderia mallei GB8 horse 4]
 gi|243063008|gb|EES45194.1| DNA polymerase III, beta subunit [Burkholderia mallei PRL-20]
 gi|254218246|gb|EET07630.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1710a]
          Length = 367

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +  ++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + +
Sbjct: 175 GHRLAFSSMKIEGSFGRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367


>gi|326403632|ref|YP_004283714.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301]
 gi|325050494|dbj|BAJ80832.1| DNA polymerase III beta subunit [Acidiphilium multivorum AIU301]
          Length = 374

 Score =  339 bits (871), Expect = 3e-91,   Method: Composition-based stats.
 Identities = 141/390 (36%), Positives = 211/390 (54%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   ++E++NTIP+  +VLL   +G L I A+  EI +   + A+
Sbjct: 1   MKLKADRATLLKALAHVQNVVEKRNTIPILANVLLSVKEGRLTIAATDLEIALIEEVAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+T  A  LY+IVR+  D A+I           + +  G     L   P  EFP 
Sbjct: 61  TMRDGSVTAPAATLYEIVRRQPDNAEIELDHPGGDAP-LALRAGRYATKLVVLPTDEFPK 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
               +  + F + +  L+ L++RT FA++TEE RYYLNGI+ H  E +    L AVATDG
Sbjct: 120 LDAGKLTHRFAVPAQALRGLIDRTRFAISTEETRYYLNGIYLHSAESEGVPVLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E  +    A MP +IVPRK V EI ++L      V ++LSE+RI   ++++ M+
Sbjct: 180 HRLARVEEPLPEGAAGMPGVIVPRKTVNEIRKLLDEVSGDVSIALSETRIQFELDTMRMT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+Y  VIP  NDK LRV   +   AV RVS ++S R + VKLS+  D L ++
Sbjct: 240 SKLIDGTYPDYSKVIPTGNDKILRVETADFSAAVARVSAITSERNKPVKLSVGRDLLVLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             +PD G A E ++   V Y   P++I F  +YL ++ + I        +V F      +
Sbjct: 300 ATSPDQGTATEELDAEQVEYRATPLEIGFQARYLNDVTEQIKG------KVEFCFADGAA 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R    +S         A +VLMPMR+
Sbjct: 354 PTLVRAAGDES---------AIFVLMPMRV 374


>gi|322417547|ref|YP_004196770.1| DNA polymerase III subunit beta [Geobacter sp. M18]
 gi|320123934|gb|ADW11494.1| DNA polymerase III, beta subunit [Geobacter sp. M18]
          Length = 372

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 206/389 (52%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + +   ++ L     I+E++NT+P+  + LL+  +  L I A+  E+ +  + P  
Sbjct: 1   MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLYITATDLEVGMKSSYPTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  LY+IV+++ D   +   K+N+    V I+ G + F +      EFP 
Sbjct: 61  VIREGKITVSAKKLYEIVKEMPDEEILFSTKDND---WVEITCGKARFNIVGLSSEEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
             + +        + +L +++E+T +A+  +E +Y LNG+F    +E+    L  VATDG
Sbjct: 118 FPKVKEENFLVFKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGGNVLKMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL+VA+  I   I    S  II P+K + E+ +++  +D  + +   ++   +   +  
Sbjct: 178 HRLSVAQKAITGNITAELSKGIIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIKKGNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDGEFP+Y  VIP +ND+ +++N      ++ R+SI+SS + + VK+ ++ + + 
Sbjct: 238 VVMRLIDGEFPDYTKVIPVANDRIVQINRDKFLHSLKRMSILSSEKFKGVKIDVNPELVI 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G+A E + + Y+   +   FN KYL++++  +        EV  +L    S 
Sbjct: 298 ISSSNPELGEAREEIEIDYDGNGISARFNAKYLIDVLSVMEQR-----EVELKLKDELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V ++  D +             V+MPMR+
Sbjct: 353 VIMKAADSEE---------FLAVIMPMRL 372


>gi|91785915|ref|YP_546867.1| DNA polymerase III subunit beta [Polaromonas sp. JS666]
 gi|91695140|gb|ABE41969.1| DNA polymerase III, beta subunit [Polaromonas sp. JS666]
          Length = 368

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 201/385 (52%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I  +     D
Sbjct: 4   LKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGAQLQLTTSDLEIQIRTSADLDGD 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI+R +     +S        +++ +  G S F LQ+ P  +FP  
Sbjct: 64  AGNFTTTVGARKLIDILRSMPSDQTVSLES---AQSKLILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  SF +   VLK L+ +  FAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAANFGPSFSVPQKVLKELLNQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +  ++ K   +I+PRK V E+ R+LS K+ ++++  + ++   + E +    +
Sbjct: 179 LAFSSATLDVEVPKQE-VILPRKTVLEMQRLLSDKEGAIEMQFAGNQAKFSFEGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHKNIITLGRVPLLASLQRTAILTSEKFKGVRLNIEPGTLRVASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y    ++I FN  YL++ + N+       D V   L  SNSS  + 
Sbjct: 298 NAEQEEAVDELDIDYGGDAIEIGFNVTYLIDALANME-----QDMVKIELADSNSSALLT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D  +           YV+MPMRI
Sbjct: 353 IPDDAA---------FKYVVMPMRI 368


>gi|83720585|ref|YP_443734.1| DNA polymerase III subunit beta [Burkholderia thailandensis E264]
 gi|167582969|ref|ZP_02375843.1| DNA polymerase III subunit beta [Burkholderia thailandensis TXDOH]
 gi|167620900|ref|ZP_02389531.1| DNA polymerase III subunit beta [Burkholderia thailandensis Bt4]
 gi|83654410|gb|ABC38473.1| DNA polymerase III, beta subunit [Burkholderia thailandensis E264]
          Length = 367

 Score =  339 bits (870), Expect = 4e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 201/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +  ++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    ++   +IVPRK + E+ R+L   D +VK+ +++++       + +
Sbjct: 175 GHRLAFSSMKIEGSFSRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367


>gi|167834928|ref|ZP_02461811.1| DNA polymerase III subunit beta [Burkholderia thailandensis MSMB43]
          Length = 367

 Score =  339 bits (870), Expect = 5e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +  ++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGD--RLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + +
Sbjct: 175 GHRLAFSSMKIEGAFGRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367


>gi|147676337|ref|YP_001210552.1| DNA polymerase sliding clamp subunit [Pelotomaculum
           thermopropionicum SI]
 gi|146272434|dbj|BAF58183.1| DNA polymerase sliding clamp subunit [Pelotomaculum
           thermopropionicum SI]
          Length = 369

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 184/386 (47%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +R ++   L    R +  KN +P+   +  +A D  L + A+  E+ I  +I A 
Sbjct: 1   MKIISDRENLFNALQVVQRAVSVKNPLPILSGIKFEAEDDRLFLTATDLEMGIRCSITAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+  + A  + +++RKL D       + ++    V I +  S   +  F   E+P 
Sbjct: 61  VLQPGAAVLPARYITELIRKLPDQP--FLIESDQDTGHVTIRYASSEASMNCFQADEYPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    F + +  ++ ++ +  FA+ ++E R    G+ F + E   ++  VATD HR
Sbjct: 119 FPVPEGKIEFTVPADTVREVIRQVIFAVGSDENRPVFTGVLFEVREG--QVQVVATDTHR 176

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA  + D+  +I+    ++I+P +++ E+ RI   +D  VKV+ +ES++   +   S+  
Sbjct: 177 LAWRKFDLEERISGADINLIIPGRSLNELARIAGGQDGRVKVTAAESQVLFTVGETSLIT 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI G FPNY+ VIP      +R    +L +A +R S++S     AV+L    + + +T 
Sbjct: 237 RLIGGNFPNYRQVIPQEFVSRIRAKTKDLAEATERASLLSKDGAPAVRLDAGGNVMVVTA 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G+  E + V     P+ I FN +YL +++  + S     +E+        S   I
Sbjct: 297 -NSEVGRVREELAVQQEGEPVQIAFNARYLSDVLKVVGS-----EEIDIEFTGPLSPGVI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R              +   +L+P+R+
Sbjct: 351 RPV---------GSTDYLSLLLPVRL 367


>gi|153002881|ref|YP_001377206.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. Fw109-5]
 gi|152026454|gb|ABS24222.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. Fw109-5]
          Length = 376

 Score =  339 bits (869), Expect = 6e-91,   Method: Composition-based stats.
 Identities = 122/393 (31%), Positives = 201/393 (51%), Gaps = 25/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M++ +  +++ + LG +  I+E+K+T+P+  HVLL+A  G L + A+  ++ ++      
Sbjct: 1   MELKIGVAELAKALGRSQGIVEKKSTMPILSHVLLEAKGGHLVVSATDLDLAVSSEHGEH 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V   G++ VSA  LY+IVR L +         N     + +  G S F +   P  +F
Sbjct: 61  CEVLKEGALAVSARHLYEIVRALPEQQVTLKRAHNNY---LEVRSGPSEFRIVGLPAEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E V   ++    L +++ERT FA++ +E RY LNG++F    E L+L  VATDG
Sbjct: 118 PALPRFEKVTFSDVKPEDLLDMIERTFFAVSNDETRYNLNGVYFEPGPEVLRL--VATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS------KDSSVKVSLSESRIHLNI 232
           HRL+++E  I         +I+P+K + E+ ++L             K+   E+      
Sbjct: 176 HRLSLSERSIGGTFGLKRGVILPKKGLHELRKLLGEAVEAGADAGETKLGFVENSAIFRR 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             + +S+RLI+G FP+Y+ VIP   +K LR+      + + RVS++SS +  AVKL L  
Sbjct: 236 PGVILSMRLIEGLFPDYRQVIPKQGEKVLRLGRDRFLETLRRVSLLSSDKAHAVKLELGQ 295

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L +   NPD+G+A E + V Y   P+ I FN +YL++++  + S      EV   L  
Sbjct: 296 GTLKVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYLMDVLGVVKSA-----EVQLELAD 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S   +RG D+              V+MPMRI
Sbjct: 351 DLSPGVMRGGDE-------KDAGFTAVVMPMRI 376


>gi|197116404|ref|YP_002136831.1| DNA polymerase III subunit beta [Geobacter bemidjiensis Bem]
 gi|197085764|gb|ACH37035.1| DNA polymerase III, beta subunit [Geobacter bemidjiensis Bem]
          Length = 372

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 108/389 (27%), Positives = 206/389 (52%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + +   ++ L     I+E++NT+P+  + LL+  +  L I A+  E+ +  + P +
Sbjct: 1   MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  LY+IV+++ D       K+N+    V I+ G + F +      EFP 
Sbjct: 61  VIREGKITVSAKKLYEIVKEMPDEEIHFTTKDND---WVEITCGKARFNIVGLSSEEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             + +        + +L +++E+T +A+  +E +Y LNG+F    +E+ +  L  VATDG
Sbjct: 118 FPKVKEESFLVFKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENVLKMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL+V++  I   I    S  +I P+K + E+ +++  +D  + +   ++   +   +  
Sbjct: 178 HRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEEDGEIMLGFMDNSAVIKKGNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDGEFP+Y  VIP SND+ +++N      ++ R++I+SS + + VK+ ++ + + 
Sbjct: 238 VVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVNPELVI 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G+A E + V Y    +   FN KYL++++  +        EV  +L    S 
Sbjct: 298 ISSSNPELGEAREEIEVQYEGNNISARFNAKYLIDVLSVMEQR-----EVELKLKDELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V ++   ++             V+MPMR+
Sbjct: 353 VIMKAAAEEE---------FLAVIMPMRL 372


>gi|307728078|ref|YP_003905302.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1003]
 gi|307582613|gb|ADN56011.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1003]
          Length = 367

 Score =  338 bits (868), Expect = 7e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGETVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    A+   +I+PRK + E+ R+L   D ++K+ ++++++      + +
Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|296115230|ref|ZP_06833871.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC
           23769]
 gi|295978331|gb|EFG85068.1| DNA polymerase III subunit beta [Gluconacetobacter hansenii ATCC
           23769]
          Length = 374

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 138/390 (35%), Positives = 215/390 (55%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  +R+ +L+ L H   + E++NTIP+  +VL+   DGL+ + A+  EI +   I A 
Sbjct: 1   MKLKADRATLLKALLHIQGVAEKRNTIPILANVLINVTDGLMTMTATDMEIAVVEGISAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++T  A +L DIVR+L DGA +    +      + +  G  +  L      +FPS
Sbjct: 61  TLRDGAVTAPAAVLCDIVRRLPDGAVVE-LDQAGGDAPLALRAGRFSTSLNVLDVDDFPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATDG 178
                  + F +AS  L+ L++R+ FA++TEE RYYLNGI+FH+ E  +   L AVATDG
Sbjct: 120 MMAGALPHDFTIASQALRGLIDRSRFAISTEETRYYLNGIYFHVAETPQGPMLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA  E D+    A MP +I+PRK V E+ ++L      + ++LS++RI   + ++ ++
Sbjct: 180 HRLARVETDLPDGAAGMPGVIIPRKTVNELRKLLEEGPEHIGIALSDTRIQFTVGNVILT 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FP Y+ VIP  NDK L V       AV RV+ +S  R + VKL+++ + L ++
Sbjct: 240 SKLIDGTFPEYERVIPTGNDKVLHVGKKIFSDAVSRVAAISQERSRPVKLAVTQNLLTLS 299

Query: 299 VDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
             + D G A E ++   V Y+  P++I F  +YL +I D I         V F    S++
Sbjct: 300 AASQDQGTATEELDDTHVVYDASPIEIGFQARYLNDITDQIE------KNVEFAFSDSSA 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +R  D         + +A YVLMPMR+
Sbjct: 354 PTIVRDVD---------RPSALYVLMPMRV 374


>gi|323524379|ref|YP_004226532.1| DNA polymerase III subunit beta [Burkholderia sp. CCGE1001]
 gi|323381381|gb|ADX53472.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1001]
          Length = 367

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGESVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    A+   +I+PRK + E+ R+L   D ++K+ ++++++      + +
Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|167560989|ref|ZP_02353905.1| DNA polymerase III subunit beta [Burkholderia oklahomensis EO147]
 gi|167568253|ref|ZP_02361127.1| DNA polymerase III subunit beta [Burkholderia oklahomensis C6786]
          Length = 367

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 200/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLTLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +   L AVATD
Sbjct: 117 PTVAQAKDFGASLSVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDS--LMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + +
Sbjct: 175 GHRLAFSSMKIEGAFPRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNSFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367


>gi|78484348|ref|YP_390273.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2]
 gi|78362634|gb|ABB40599.1| DNA polymerase III, beta subunit [Thiomicrospira crunogena XCL-2]
          Length = 368

 Score =  338 bits (868), Expect = 8e-91,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 209/386 (54%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ R ++L++L     ++E++ T+P+  ++L Q N   L + AS  EIE   +    
Sbjct: 1   MKISLSRENLLKVLQTVGGVVEKRQTMPILANILFQVNQNTLTVTASDLEIETRASTELE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D   S+T+ A  L  IVR L DG  I    +        +S G S F L + P  +FP
Sbjct: 61  SSDGDFSVTLPAVKLISIVRSLPDGLTILLEFDE---MRCQLSAGRSRFKLSTLPADDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +   SF +A   LK ++  T FAMA++++R+YLNG+ F I+ + L++  VATDGH
Sbjct: 118 TIDLTQTELSFSMAQHQLKQIIHNTAFAMASQDVRFYLNGMLFDISNQTLRV--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+     +  +       I+PRK V E+ +++   DS +  SL+++ + +  E    + 
Sbjct: 176 RLSTCSTLLETEGLTATQAILPRKGVLELQKLIGDDDSLIAFSLAKNYLTVQFEETVFTC 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP++  V+P  ND+ ++ +   LR  + R +I+S+ + + ++L+LS + L +  
Sbjct: 236 KLVDGRFPDFNRVLPQHNDQLVQTDRELLRSLLQRAAILSNDKFKGIRLALSQNLLAVHA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  ++ E M + YN   M+I FN  YLL++++++      ++ V   +  +NSS  +
Sbjct: 296 QNSDQDESHEDMAIDYNGTEMEIGFNVNYLLDVLNSMH-----EEAVTLYMKDANSSCMV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   + ++   +  +V+MPMR+
Sbjct: 351 --------DTQNETCHCQHVIMPMRL 368


>gi|126451494|ref|YP_001064387.1| DNA polymerase III subunit beta [Burkholderia pseudomallei 1106a]
 gi|242316207|ref|ZP_04815223.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b]
 gi|126225136|gb|ABN88676.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106a]
 gi|242139446|gb|EES25848.1| DNA polymerase III, beta subunit [Burkholderia pseudomallei 1106b]
          Length = 367

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 199/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDQVATTVAARKLLDILRAMPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  +  ++  S  +     + L+   +FAMA ++IRYYLNG+   ++ +   L AVATD
Sbjct: 117 PTVAQSKDFGASLAVPQKAFRQLLGMVYFAMAQQDIRYYLNGMLLVVDGDS--LMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I     +   +IVPRK + E+ R+L   D +VK+ +++++       + +
Sbjct: 175 GHRLAFSSMKIEGSFGRQE-VIVPRKTILELQRLLEDIDDTVKIDIAQTQAKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP ++     +    L++++ R +I++S + + V+  ++  +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKAHKNTFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D V   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYQGDTVDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITVPENDE---------FKYVVMPMRI 367


>gi|121596426|ref|YP_988322.1| DNA polymerase III subunit beta [Acidovorax sp. JS42]
 gi|120608506|gb|ABM44246.1| DNA polymerase III, beta subunit [Acidovorax sp. JS42]
          Length = 368

 Score =  338 bits (867), Expect = 9e-91,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 200/385 (51%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VLL+     +++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S        +++ +  G S F LQ+ P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILKTMPSDQTVSLESN---QSKLILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  +F +   VLK+L+ +  FAMA ++IRYYLNGI F    E   L  VATDGHR
Sbjct: 121 QEAASFGPAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   +  ++ K   +I+PRK V E+ R+LS  D ++++  + ++   +   +    +
Sbjct: 179 LAFASAQLDVEVPKQE-VILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS  + 
Sbjct: 298 NAEQEEAVDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D +         +  YV+MPMRI
Sbjct: 353 IPDNE---------HFKYVVMPMRI 368


>gi|332531210|ref|ZP_08407123.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624]
 gi|332039317|gb|EGI75730.1| DNA polymerase III subunit beta [Hylemonella gracilis ATCC 19624]
          Length = 368

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 110/385 (28%), Positives = 197/385 (51%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +V+L+ +   +++  S  EI+I        D
Sbjct: 4   LKASQDKVLSVLQSVAGIVERRHTLPILANVMLRRSGNAVQLTTSDLEIQIRTVAEFEGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI+R L     ++         ++ +  G S F LQS P  +FP  
Sbjct: 64  SGNFTTTVGARKLIDILRTLPSDQTVTLES---SQNKLVLKGGKSKFTLQSLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +    LK L+ +  F+MA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAANFGPKFSVPQKTLKELLGQVSFSMAVHDIRYYLNGILFVAEGQQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   +  ++ K   +I+PRK V E+ R+LS  + ++++  + ++   +   +    +
Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDNEGAIEMQFAGNQAKFSFGGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L++    L +   
Sbjct: 238 LVEGKFPDYNRVIPKNHKNIIVLGRQPLLASLQRAAILTSDKFKGVRLNIEPGTLRIAST 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y+   ++I FN  YL+E++ N+       + V   L  SNSS  + 
Sbjct: 298 NAEQEEAVDELDIDYSGDSIEIGFNVTYLIEVLGNM-----TQEMVRVELSDSNSSALVT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D           N  YV+MPMRI
Sbjct: 353 IPDN---------ANFKYVVMPMRI 368


>gi|134297883|ref|YP_001111379.1| DNA polymerase III subunit beta [Desulfotomaculum reducens MI-1]
 gi|134050583|gb|ABO48554.1| DNA polymerase III, beta subunit [Desulfotomaculum reducens MI-1]
          Length = 365

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 195/384 (50%), Gaps = 21/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   R ++++ +  A R +  KN +P+   +LL A D  L+++A+  E+ I   +P +
Sbjct: 1   MKIICTRQNLIQGVTTAQRAVSAKNPLPILSGILLTAKDNKLKLQATDLEMGIQCVVPCT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSI + A  L +IVR+L D        E+  GT V I +G S   +  F   EFP+
Sbjct: 61  TQEEGSIVLPAKYLSEIVRRLPDSPI---QIESNQGTNVIIRYGQSEITINGFDAEEFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +   S  +    LK  + +  FA  ++E R    G+   I    L+L  V TD HR
Sbjct: 118 FPKPQSKNSLTIPEEELKEYLRQILFATLSDENRPVFTGVLMEILNGTLRL--VTTDTHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+   + +    +II+P K + E+ R++ + D  V +SL E++I   +E   +  R
Sbjct: 176 LAMREIK-DSSVDNDINIIIPGKTLNELTRVIGAADQQVTISLGENQIIFGMEDTLLISR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP  +   +R+   +L +A +R S+++ V  Q ++L++  +K+ +T  
Sbjct: 235 LIEGQFPNYRQVIPQGHKTRIRLKTKDLLEASERASLLARVGTQIIRLNIEEEKIILTA- 293

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N ++G+  E + VY     + I FN  YL++ +  I S     D + F L    S   +R
Sbjct: 294 NTEVGRIHEEVPVYLQGESLQISFNAMYLIDALRAIGS-----DNIYFDLSGPLSPGILR 348

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
             + D         +   +++P+R
Sbjct: 349 PVEGD---------DYLSLILPVR 363


>gi|222109227|ref|YP_002551491.1| DNA polymerase iii subunit beta [Acidovorax ebreus TPSY]
 gi|221728671|gb|ACM31491.1| DNA polymerase III, beta subunit [Acidovorax ebreus TPSY]
          Length = 368

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 200/385 (51%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VLL+     +++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVAGIVERRHTLPILANVLLRKTGNAIQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S        +++ +  G S F LQ+ P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILKTMPADQTVSLESN---QSKLILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  +F +   VLK+L+ +  FAMA ++IRYYLNGI F    E   L  VATDGHR
Sbjct: 121 QEAASFGPAFSVPQKVLKSLLGQVSFAMAVQDIRYYLNGILFV--AEGTTLSLVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   +  ++ K   +I+PRK V E+ R+LS  D ++++  + ++   +   +    +
Sbjct: 179 LAFASAQLDVEVPKQE-VILPRKTVLELQRLLSDADGAIEMQFANNQAKFSFGGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHHNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGLLRVASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS  + 
Sbjct: 298 NAEQEEAVDELDIDYGGDAIEIGFNVSYLIDALANMGQDMVKVD-----LADGNSSALMT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D +         +  YV+MPMRI
Sbjct: 353 IPDNE---------HFKYVVMPMRI 368


>gi|120608716|ref|YP_968394.1| DNA polymerase III subunit beta [Acidovorax citrulli AAC00-1]
 gi|120587180|gb|ABM30620.1| DNA polymerase III, beta subunit [Acidovorax citrulli AAC00-1]
          Length = 372

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 113/389 (29%), Positives = 198/389 (50%), Gaps = 26/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S   +    +++ +  G S F LQS P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILKTMPADQTVSLESQ---QSKLVLKGGKSRFTLQSLPAEDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  +F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHR
Sbjct: 121 QESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  ++ K   +I+PRK V E+ R+LS         +++  + ++       + 
Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGME 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L 
Sbjct: 238 FVTKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLR 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS
Sbjct: 298 VASNNAEQEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVRVD-----LSDGNSS 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   + D         N  YV+MPMRI
Sbjct: 353 ALMTIPEND---------NFKYVVMPMRI 372


>gi|86156432|ref|YP_463217.1| DNA polymerase III subunit beta [Anaeromyxobacter dehalogenans
           2CP-C]
 gi|85772943|gb|ABC79780.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans
           2CP-C]
          Length = 375

 Score =  337 bits (866), Expect = 1e-90,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 208/392 (53%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M++ +   ++ + LG +  I+E+K+T+P+  HVLL+A     L + A+  ++ ++     
Sbjct: 1   MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VSA  LY+IVR L +         N     + +  G S F +   P  +FP
Sbjct: 61  EVLKEGAVAVSARHLYEIVRALPEQTVTLKKAHNNY---LEVKSGPSEFRIVGLPAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    + V   ++  ++L  ++ERT FA++ +E RY LNG++F    + L+L  VATDGH
Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDS--SVKVSLSESRIHLNIE 233
           RL+++E  + A       +I+P+K + E+ ++L     S +     K+   E+       
Sbjct: 176 RLSLSERTVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ + +RLI+G FP+Y+ VIP + +K  +V      + + R+S++SS +  AVKL LS D
Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRARFLETLRRISLLSSDKAHAVKLDLSKD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NPD+G+A E + V Y   P+ I FN +Y++E++  + S+     EVVF L   
Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKSN-----EVVFELADD 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   ++G ++              V+MPMRI
Sbjct: 351 LSPGVLKGGEE-------ADQGFTAVVMPMRI 375


>gi|326314825|ref|YP_004232497.1| DNA polymerase III subunit beta [Acidovorax avenae subsp. avenae
           ATCC 19860]
 gi|323371661|gb|ADX43930.1| DNA polymerase III, beta subunit [Acidovorax avenae subsp. avenae
           ATCC 19860]
          Length = 372

 Score =  337 bits (865), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 197/389 (50%), Gaps = 26/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S   +    +++ +  G S F LQS P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILKTMPADQTVSLESQ---QSKLVLKGGKSRFTLQSLPAEDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHR
Sbjct: 121 QESAAFGPVFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  ++ K   +I+PRK V E+ R+LS         +++  + ++       + 
Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGME 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L 
Sbjct: 238 FVTKLVEGKFPDYNRVIPKNHKNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNIEPGTLR 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A++ +++ Y    ++I FN  YL++ + N+  D V  D     L   NSS
Sbjct: 298 VASNNAEQEEAVDELDIDYGGDTIEIGFNVTYLIDALANMGQDMVKVD-----LSDGNSS 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   D D         N  YV+MPMRI
Sbjct: 353 ALMTIPDND---------NFKYVVMPMRI 372


>gi|209515896|ref|ZP_03264758.1| DNA polymerase III, beta subunit [Burkholderia sp. H160]
 gi|209503744|gb|EEA03738.1| DNA polymerase III, beta subunit [Burkholderia sp. H160]
          Length = 367

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 110/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + +G       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDSVATTVAARKLLDILRAMPEGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    A+   +I+PRK + E+ R+L   D +VK+ ++++++      + +
Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTVKIDIAQTQVKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNKFLIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|170694068|ref|ZP_02885224.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M]
 gi|170141140|gb|EDT09312.1| DNA polymerase III, beta subunit [Burkholderia graminis C4D1M]
          Length = 367

 Score =  337 bits (864), Expect = 2e-90,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDTVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + ++Y  +  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    A+   +I+PRK + E+ R+L   D ++K+ ++++++      + +
Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDTLQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|323703941|ref|ZP_08115571.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM
           574]
 gi|323531099|gb|EGB21008.1| DNA polymerase III, beta subunit [Desulfotomaculum nigrificans DSM
           574]
          Length = 365

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 198/385 (51%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   R ++++ +  A R +  KN +P+   +L  A +  LE+ A+  E+ I   IPA+
Sbjct: 1   MKIICTRQNLVQGVTTAQRGVSAKNPLPILSGILFIAKNNSLELHATDLEMGIQCTIPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   GSI + A  L +IVR+L D   QI   ++N       I +G S   +  +   EFP
Sbjct: 61  VQEEGSIVLPARYLGEIVRRLPDAPIQIDATQDNNA----IIRYGQSEITINGYDAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S  +    LK ++ +  FA +T+E R    G+       +  L  VATD H
Sbjct: 117 VLPTPQGKGSLSIPEEDLKEILRQVLFATSTDENRPVFTGVLME--NNNGCLRLVATDTH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ E +I   I  + S+I+P KA+ E+ R++ + D +V +SL ++++  ++E   +  
Sbjct: 175 RLALREENIGNDIEDI-SVIIPGKALNELARVIGAPDRNVTISLGDNQVIFSMEDTRLVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ VIP      LR+    L ++V+R S+++ V  Q V+L++  +K+ +T 
Sbjct: 234 RLIEGQFPNYRQVIPRGYKTRLRMRTKELLESVERASLLARVGSQIVRLAIEEEKVIITA 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G+  E + V+ +     I FN  YL++ +  I SD +  D     L    S   +
Sbjct: 294 -NTEVGRIHEEVPVFLDGETTAISFNAVYLIDALRAIGSDNIYLD-----LSGPLSPGIL 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           R  ++D         N   +++P+R
Sbjct: 348 RPVEED---------NYLSLVLPVR 363


>gi|197120423|ref|YP_002132374.1| DNA polymerase III subunit beta [Anaeromyxobacter sp. K]
 gi|196170272|gb|ACG71245.1| DNA polymerase III, beta subunit [Anaeromyxobacter sp. K]
          Length = 375

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 209/392 (53%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M++ +   ++ + LG +  I+E+K+T+P+  HVLL+A     L + A+  ++ ++     
Sbjct: 1   MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VSA  LY+IVR L + +       N     + +  G S F +   P  +FP
Sbjct: 61  EVVKEGAVAVSARHLYEIVRALPEQSVTLKKAHNNY---LEVKSGPSEFRIVGLPAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    + V   ++  ++L  ++ERT FA++ +E RY LNG++F    + L+L  VATDGH
Sbjct: 118 ALPRFDKVPFADVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDS--SVKVSLSESRIHLNIE 233
           RL+++E  + A       +I+P+K + E+ ++L     S +     K+   E+       
Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEKPEAKLGFVENSAIFRRP 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ + +RLI+G FP+Y+ VIP + +K  +V      + + R+S++SS +  AVKL LS D
Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NPD+G+A E + V Y   P+ I FN +Y++E++  + S+     EVVF L   
Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKSN-----EVVFELADD 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   ++G ++              V+MPMRI
Sbjct: 351 LSPGVLKGGEE-------ADQGFTAVVMPMRI 375


>gi|91781386|ref|YP_556592.1| DNA polymerase III subunit beta [Burkholderia xenovorans LB400]
 gi|187922037|ref|YP_001893679.1| DNA polymerase III subunit beta [Burkholderia phytofirmans PsJN]
 gi|296157626|ref|ZP_06840461.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1]
 gi|91685340|gb|ABE28540.1| DNA polymerase III, beta subunit [Burkholderia xenovorans LB400]
 gi|187713231|gb|ACD14455.1| DNA polymerase III, beta subunit [Burkholderia phytofirmans PsJN]
 gi|295892398|gb|EFG72181.1| DNA polymerase III, beta subunit [Burkholderia sp. Ch1-1]
          Length = 367

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 204/388 (52%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDSVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + ++Y  +  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDYGANLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I     +   +I+PRK + E+ R+L   D ++K+ ++++++      + +
Sbjct: 175 GHRLAFSSMKIEGSF-QRQEVIIPRKTILELQRLLEDIDDTLKIDIAQTQVKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+  +  +    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNQFVIGREELQRSLQRAAILTSDKFKGVRCIIEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDTLQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|220915125|ref|YP_002490429.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
 gi|219952979|gb|ACL63363.1| DNA polymerase III, beta subunit [Anaeromyxobacter dehalogenans
           2CP-1]
          Length = 375

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 207/392 (52%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M++ +   ++ + LG +  I+E+K+T+P+  HVLL+A     L + A+  ++ ++     
Sbjct: 1   MELKIGAQELAKALGRSQGIVEKKSTMPILSHVLLEAKKGDQLVVSATDLDLAVSSEHAC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VSA  LY+IVR L +         N     + +  G S F +   P  +FP
Sbjct: 61  EVLKEGAVAVSARHLYEIVRALPEQTVTLKKAHNNY---LEVKSGPSEFRIVGLPAEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    + V    +  ++L  ++ERT FA++ +E RY LNG++F    + L+L  VATDGH
Sbjct: 118 ALPRFDKVPFAPVDPALLLEMIERTFFAVSNDETRYNLNGVYFEPAGDALRL--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDS--SVKVSLSESRIHLNIE 233
           RL+++E  + A       +I+P+K + E+ ++L     S +     K+   E+       
Sbjct: 176 RLSLSERAVGATFGLKRGVILPKKGLAELKKLLAEAAESGEEQPEAKLGFVENSAIFRRP 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++ + +RLI+G FP+Y+ VIP + +K  +V      + + R+S++SS +  AVKL LS D
Sbjct: 236 NVVLVMRLIEGLFPDYKQVIPKAGEKVFKVGRGRFLETLRRISLLSSDKAHAVKLDLSKD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   NPD+G+A E + V Y   P+ I FN +Y++E++  + S+     EVVF L   
Sbjct: 296 LLRVLSQNPDLGEAKEEVPVEYAGEPLKIGFNARYIMEVLQAVKSN-----EVVFELADD 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   ++G ++              V+MPMRI
Sbjct: 351 LSPGVLKGGEE-------ADQGFTAVVMPMRI 375


>gi|297537199|ref|YP_003672968.1| DNA polymerase III subunit beta [Methylotenera sp. 301]
 gi|297256546|gb|ADI28391.1| DNA polymerase III, beta subunit [Methylotenera sp. 301]
          Length = 366

 Score =  336 bits (863), Expect = 3e-90,   Method: Composition-based stats.
 Identities = 112/386 (29%), Positives = 208/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+E+++T+P+  ++LL+A    + + A+  E++I+ +I ++
Sbjct: 1   MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSIESA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                S T+SA  L DI R L D ++I+    +   + + +  G S F LQ+ P +++P 
Sbjct: 61  TTGDFSTTISAKKLLDICRSLPDSSEINMATND---SRITLKAGKSRFNLQTLPAADYPV 117

Query: 121 TKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + +   +   +    LK+L+++  FAMA ++IRYYLNG+ F +     +L  V TDGH
Sbjct: 118 MTKTQGESTLVTIGQRQLKDLLKQVEFAMAQQDIRYYLNGLLFEVVAN--RLNIVGTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+    ++     K   +I+PRK V E++++L   D  V++ L+ ++++ +     +  
Sbjct: 176 RLSFTSTELKQNYDKQ-DVILPRKTVIELIKLLDDSDEDVQIELASNQVNFSFSHFKLIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG+FP+Y  VIP  +      +   +  A+ R SI+S+ + + +++ LS++ L +  
Sbjct: 235 KVIDGKFPDYNRVIPTGHQNSFTTDRVGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  +A E + + Y    +DI FN  YL+++++N SS     ++  F    +NSS  I
Sbjct: 295 TNSDQEEAEEELEIDYAGDSLDIGFNVTYLIDVLNNTSS-----EQATFSFADANSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       N  +  YV+MPMRI
Sbjct: 350 TVP---------NNTDYKYVVMPMRI 366


>gi|119896294|ref|YP_931507.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
 gi|119668707|emb|CAL92620.1| DNA-directed DNA polymerase [Azoarcus sp. BH72]
          Length = 369

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 200/385 (51%), Gaps = 21/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   R  +L  L     I+E+++T+P+  +VL++     L + A+  EI+I       + 
Sbjct: 4   LNTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKRGDQLTLLATDIEIQIRTTTAGHIG 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               SITV A  L DI+R L D   I    E++    + +  G S F LQ+ P +++P  
Sbjct: 64  GEDSSITVGARKLQDILRALSDSVDIVLTLEDK---RLTVKAGKSRFQLQTLPAADYPRM 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +     F +     K  + +  ++MA ++IRYYLNG+    +  +L++  VATDGHR
Sbjct: 121 NLPDGDAVRFSVPQRAFKRQLAQVSYSMAQQDIRYYLNGLLLIADGSELRM--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D+   +      I+PRK V E+ R L+  D  +++ L+ ++      S+ +  +
Sbjct: 179 LAYAAGDLAVPVQARTEAILPRKTVLELARQLADTDDPLEIILAGNQAVFRFGSIELVTK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ VIP ++ + +  +   L  ++ R +I+++ + + V++ L    L +   
Sbjct: 239 LIDGKFPDYERVIPQNHPRMVTFDRQPLLASLQRAAILTNEKFRGVRMVLGEGALKIISS 298

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y++ P+DI FN  YLL++++N+SS     ++V +R +  NSS  + 
Sbjct: 299 NTEQEEAQEELEIDYHDTPLDIGFNVTYLLDVLNNLSS-----EQVEWRFNDGNSSALVT 353

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D            YV+MPMRI
Sbjct: 354 LPGND---------KFKYVVMPMRI 369


>gi|295675103|ref|YP_003603627.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002]
 gi|295434946|gb|ADG14116.1| DNA polymerase III, beta subunit [Burkholderia sp. CCGE1002]
          Length = 367

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 205/388 (52%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGDSVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + ++Y  S  +     + L+   HF+MA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDYGASLVVPQKTFRQLLGMVHFSMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    A+   +I+PRK + E+ R+L   D ++ + ++++++      + +
Sbjct: 175 GHRLAFSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDTLNIDIAQTQVKFTFGQVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+  + ++    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNKFQIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y+   +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIAYDGDSVDIGFNVTYLLDVLANLK-----VDMLQVSLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|241765811|ref|ZP_04763751.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN]
 gi|241364293|gb|EER59448.1| DNA polymerase III, beta subunit [Acidovorax delafieldii 2AN]
          Length = 372

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 194/389 (49%), Gaps = 26/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI+R +     +S        +++ +  G S F LQ+ P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILRTMPGDQTVSLES---AQSKLILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +    LK+L+ +  FAMA ++IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QESAAFGPVFSVPQKTLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  ++ K   +I+PRK V E+ R+LS         +++  + ++       + 
Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVLELQRLLSDAGGDNQPHIEMQFANNQAKFTFGGME 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L+L    L 
Sbjct: 238 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLNLEPGTLR 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A++ +++ Y    ++I FN  YL++ + N+       D V   L   NSS
Sbjct: 298 VASNNAEQEEAVDELDIDYGGDTIEIGFNVTYLIDALANMG-----QDMVKVELSDGNSS 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   D           N  YV+MPMRI
Sbjct: 353 ALVTIPDN---------SNFKYVVMPMRI 372


>gi|134096622|ref|YP_001102283.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL
           2338]
 gi|291005724|ref|ZP_06563697.1| DNA polymerase III subunit beta [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909245|emb|CAL99357.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 374

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 172/389 (44%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59
           MKI VER  + + +    R +  +  +PV   VLL A+ G  L I     E+     I A
Sbjct: 1   MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDASSGEALTISGFDYEVSAQVTIDA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S+D  G   VS  LL DI + L +            G+ V I+ G S F L + P  ++P
Sbjct: 61  SIDSTGRTLVSGRLLADITKALPNRPVEITVD----GSRVTITCGSSRFSLPTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                   ++  +   +    V +   A   ++    L G+   IN +  +L  VATD  
Sbjct: 117 ELPAMPD-HAGSVPGDLFSEAVSQVAVAAGKDDTLPMLTGVRMEINAD--RLTMVATDRF 173

Query: 180 RLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236
           RLA+ E         +  S++VP K + +  + L +  + V++SL   +  + L+  S  
Sbjct: 174 RLAMREFTWEPGTTIEDTSVLVPAKTLSDSAKTLGTGGNKVEISLASGDGLLGLSGNSRR 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + RL+D EFP Y+ ++P  +     V+   L +A+ RVS+++  R   V+L  S   L 
Sbjct: 234 STTRLLDAEFPKYRQLLPSESAVTAVVDVAPLVEAIKRVSLVA-ERGTQVRLEFSDAGLR 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T    D G A E + V      + I FN  YLL+ +  + S     D       +SN  
Sbjct: 293 LTAGGDDEGSAEEELPVELVGEALTIAFNPAYLLDGLGALKS-----DRAQMLFTTSNRP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++   +D +  +       Y+LMP+R+
Sbjct: 348 AVLKPVGEDGEVAE----GYLYLLMPVRL 372


>gi|319760740|ref|YP_004124677.1| DNA polymerase iii, beta subunit [Alicycliphilus denitrificans BC]
 gi|330822655|ref|YP_004385958.1| DNA polymerase III subunit beta [Alicycliphilus denitrificans K601]
 gi|317115301|gb|ADU97789.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans BC]
 gi|329308027|gb|AEB82442.1| DNA polymerase III, beta subunit [Alicycliphilus denitrificans
           K601]
          Length = 368

 Score =  336 bits (862), Expect = 4e-90,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 196/385 (50%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L+   S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVSGIVERRHTLPILANVLIRKTGNALQFTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S        T++ +  G S F LQ+ P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILKTMPADQTVSL---ENSQTKLILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  +F +    LK L+ +  FAMA ++IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAASFGPAFSVPQKTLKTLLSQVSFAMAVQDIRYYLNGILFVAEGKTLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  ++  ++ K   +I+PRK V E+ R+LS  D ++++  + ++       +    +
Sbjct: 179 LAFASSELDMEVPKQE-VILPRKTVLELQRLLSDADGAIEMRFANNQAKFGFGGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L +   
Sbjct: 238 LVEGKFPDYNRVIPRNHHNVITLGRAPLLASLQRTAIMTSEKFKGVRLNIEPGSLRVASS 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y    ++I FN  YL++++ N+       D V   L   NSSV   
Sbjct: 298 NAEQEEAVDELDIDYGGDSIEIGFNVTYLIDVLANMG-----QDMVRMELADGNSSVVFG 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D           +  YV+MPMRI
Sbjct: 353 IPDN---------THFKYVVMPMRI 368


>gi|186474775|ref|YP_001856245.1| DNA polymerase III subunit beta [Burkholderia phymatum STM815]
 gi|184191234|gb|ACC69199.1| DNA polymerase III, beta subunit [Burkholderia phymatum STM815]
          Length = 367

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 201/388 (51%), Gaps = 24/388 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER ++L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 1   MQLVKTERDNLLRPLQTVSGIVERRHTLPILANLLITKNGPDVSFLSTDLELQITTRADF 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGGESVATTVAARKLLDILRAMPDGQVTLTLNDK----RLTVQSGKSRFALQTLAADEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  +  +     + L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 117 PTVAQAKDFGANLAVPQKTFRQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + + I    A+   +I+PRK + E+ R+L   D  +K+ ++ +++      + +
Sbjct: 175 GHRLAYSSMKIEGSFARQE-VIIPRKTILELQRLLEDIDDVLKIDIAPTQVKFTFGGVEL 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP S+     +    L++++ R +I++S + + V+  +   +L +
Sbjct: 234 VSKLVEGKFPDFQRVIPKSHKNTFVIGREELQRSLQRAAILTSDKFKGVRCIVEPGQLKI 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +DI FN  YLL+++ N+       D +   L  ++SS 
Sbjct: 294 MSTNADQEEAQEELEIPYQGDSIDIGFNVTYLLDVLANLK-----VDMLEISLGDASSSA 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 349 LITIPENDE---------FKYVVMPMRI 367


>gi|223935962|ref|ZP_03627876.1| DNA polymerase III, beta subunit [bacterium Ellin514]
 gi|223895184|gb|EEF61631.1| DNA polymerase III, beta subunit [bacterium Ellin514]
          Length = 369

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 196/390 (50%), Gaps = 27/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T+ +  ++  L     ++  + T+P+  +VL++A    LE  A+  ++ I+  + A+
Sbjct: 1   MNLTISKEQLINGLQAVQNVVSTRTTLPILSNVLIRAEGNRLEFTATDLDVTISCGVEAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV    L+ IVR+L +        E +     +I  G S + +      EFP 
Sbjct: 61  VKEGGATTVPVKKLFGIVRELNNPEI---EIEVDEKNTCSIRSGSSFYKINGLSADEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +      L    +K ++++T FA++T+E RY LNGIF  + E   KL  VATDG R
Sbjct: 118 LPKFKEDKKVTLPQEKVKGMMKKTSFAISTDESRYVLNGIFISLKEH--KLTMVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-----L 235
           LA+ + ++          IVP KAV E+ R+L+ K   V++  SE++    ++      +
Sbjct: 176 LALVDEEVDVTEKSQGEFIVPAKAVNELNRLLTDK-GEVEIRYSENQAAFTLKDEKGFSI 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +LI+G +PNY+ VIP    + + +       A+ R  IM+S +  +VKL+ S + L
Sbjct: 235 LIISKLIEGNYPNYRQVIPGEAKERIALVREEFLHALKRAEIMTSEKSNSVKLTFSKNNL 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T ++P++G+A ES+ + Y    M I FN KY+++ ++ +S     +DE+   L    S
Sbjct: 295 AITANSPEVGEARESLAINYKGKEMAIAFNPKYVIDPLNALS-----NDEIFLELIDELS 349

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++                 YV+MPMR+
Sbjct: 350 PGVVKINGP-----------FLYVVMPMRL 368


>gi|78221230|ref|YP_382977.1| DNA polymerase III subunit beta [Geobacter metallireducens GS-15]
 gi|78192485|gb|ABB30252.1| DNA polymerase III, beta subunit [Geobacter metallireducens GS-15]
          Length = 373

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 108/390 (27%), Positives = 204/390 (52%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +++      L     I+E++NT+P+  +VL++A+   +E+ A+  E+ +  +   +
Sbjct: 1   MEFKIDKETFSRALQKIQGIVEKRNTMPILSNVLIEAHADRIELTATDLEVGMKSSYETT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  LY+IV++L + A     KEN+    V I  G ++F +      EFP 
Sbjct: 61  VTREGRITVSAKKLYEIVKELPEEAISFATKEND---WVEIRCGKAHFSIVGLSPEEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +        +  ++L +++E+T +A+  +E +Y LNG F     ED K  L  VATDG
Sbjct: 118 FPKVNEESLIRIEGALLADMIEKTAYAICFDETKYNLNGTFVKATVEDDKPILRMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235
           HRL++AE +    +    +  +I P+K + E+ +I        + +   ++   +   + 
Sbjct: 178 HRLSIAEKEFHGAVGPEMAKGVIFPKKGIFELKKICEEATTEELALGFMDNSAVIKKGNT 237

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            + +RL+DGEFP+Y  V+P +NDK + V       ++ R+SI+SS + + +++ ++ +++
Sbjct: 238 VVVMRLVDGEFPDYTRVVPVANDKIVTVARDPFLHSLRRMSILSSEKFKGIRMEINGEQM 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  NP++G+A E ++  Y+  P+ I FN KYLL+++  ++     + EV   L    S
Sbjct: 298 IISSSNPELGEASEELDAAYSGPPLSIRFNAKYLLDVLAVLN-----ESEVALVLRDELS 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++    D             V+MPMR+
Sbjct: 353 PAIVKPAAVD---------GFTAVIMPMRL 373


>gi|54021966|ref|YP_116208.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152]
 gi|54013474|dbj|BAD54844.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM
           10152]
          Length = 386

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 97/397 (24%), Positives = 173/397 (43%), Gaps = 25/397 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D  E +    R +  +  +PV   VLL AN+  L +     E+     + A 
Sbjct: 1   MKFRVAREDFAESVAWVARSLPSRPPVPVLGGVLLVANEDGLTVSGFDYEVSAQMRVAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI + L +            GT V I+ G + F L + P  ++P 
Sbjct: 61  VAGPGEVLVSGRLLADITKALSNKPVDVSVD----GTRVLITCGSAKFSLPTMPVEDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     + EL+  V    V +   A   ++    L GI   I    + L   ATD  R
Sbjct: 117 LPEVPQ-QTGELSVDVFAEAVGQVAVAAGRDDTLPMLTGIRVEIEGSQVVL--AATDRFR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIES 234
           LAV  ++       +  ++++P + + E  + L + D+ V++SL     S+  + +    
Sbjct: 174 LAVRHIEWTPARPDIETAVLIPARTLSEAAKTLGASDAPVQLSLGTGAGSDGLLGIVNAG 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V+L  S++ 
Sbjct: 234 RRTTTRLLDAEFPKFRQLLPKEHTSVATLAVAALTEAIKRVALVA-ERGAQVRLEFSTEG 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++    D G+A E +   +   P+ I FN  YL++ +  + +     D V F   + +
Sbjct: 293 LLLSAGGDDAGRAEEWLEADFRGEPLTIAFNPGYLVDGLSALHA-----DRVTFGFTTPS 347

Query: 355 SSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
               +    ++     D+        N  Y+LMP+R+
Sbjct: 348 RPAVLLPASEEEPQTLDSGAFAALTGNYTYLLMPVRL 384


>gi|160895452|ref|YP_001561034.1| DNA polymerase III subunit beta [Delftia acidovorans SPH-1]
 gi|160361036|gb|ABX32649.1| DNA polymerase III, beta subunit [Delftia acidovorans SPH-1]
          Length = 372

 Score =  336 bits (861), Expect = 5e-90,   Method: Composition-based stats.
 Identities = 112/389 (28%), Positives = 198/389 (50%), Gaps = 26/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S   +     ++ +  G S F LQ+ P  +FP  
Sbjct: 64  TGDFTTTVGARKLIDILKTMPGDQTVSLETQ---QAKMVLKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  SF +   VLK+L+ +  FAMA ++IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAAAFGPSFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  ++ K   +I+PRK V E+ R+LS         +++  + ++       + 
Sbjct: 179 LAFASSQLDVEVPKQE-VILPRKTVLELQRLLSDAGGENQPHIEMQFANNQAKFTFGGME 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L++    L 
Sbjct: 238 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLTVEPGTLR 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A++ +++ Y    ++I FN  YL++ + N+S      D +   L   NSS
Sbjct: 298 VASNNAEQEEAMDELDIDYGGDTIEIGFNVTYLIDALSNMS-----QDMIRIDLQDGNSS 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   + DS           YV+MPMRI
Sbjct: 353 ALLTIPENDS---------FKYVVMPMRI 372


>gi|89898824|ref|YP_521295.1| DNA polymerase III subunit beta [Rhodoferax ferrireducens T118]
 gi|89343561|gb|ABD67764.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
          Length = 367

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 109/384 (28%), Positives = 191/384 (49%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLSVLQSVAGIVERRHTLPILANVLIRKTGTSLQLTTSDLEIQIRTTAELDGD 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
                TV A  L DI+R +     +S         ++ +  G S F LQ+    +FP  +
Sbjct: 64  TGDFTTVGARKLIDILRTMPADQTVSLES---SAAKLILKGGKSRFTLQTMAAEDFPLVQ 120

Query: 123 EE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           E   +   F +    LK+L+ +  FAMA  +IRYYLNGI F      L L  VATDGHRL
Sbjct: 121 EAASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGSQLSL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   +  ++ K   +I+PRK V E+ R+LS    ++++  + ++   + + +    +L
Sbjct: 179 AFASATLDVEVPKQE-VILPRKTVIELQRLLSDTQGAIEMQFANNQAKFSFDGMEFVTKL 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           ++G+FP+Y  VIP ++   + +  + L   + R +I++S + + V+L++    L +  +N
Sbjct: 238 VEGKFPDYNRVIPKNHQNSITLGRSALLATLQRTAILTSEKFKGVRLNIDPGTLRVASNN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A++ +++ Y    ++I FN  YL++ + N+S      D V   L   NSS     
Sbjct: 298 AEQEEAVDELDIDYGGDSIEIGFNVTYLIDALANMS-----QDMVRLELSDGNSSALFTI 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D              YV+MPMRI
Sbjct: 353 PDN---------ATFKYVVMPMRI 367


>gi|116619147|ref|YP_821303.1| DNA polymerase III subunit beta [Candidatus Solibacter usitatus
           Ellin6076]
 gi|116222309|gb|ABJ81018.1| DNA polymerase III, beta subunit [Candidatus Solibacter usitatus
           Ellin6076]
          Length = 372

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 108/389 (27%), Positives = 187/389 (48%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV +SD++  L  +  ++E+K TIP+  +VLL+A D  + + A+  E+ I  + PA 
Sbjct: 1   MEFTVSKSDLVRELSLSQGVVEKKTTIPILSNVLLEAADDRITLTATDLELGIRCSCPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS TV A  L D +R L +G     F +N      +I+ G S   +       FP 
Sbjct: 61  VKKEGSGTVPARKLLDYMRLLPEGDVNMKFLDNH---WASITSGRSRTRIAGMSRESFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +       L +++ RT FA++ EE R+ LNG    +  E L +  VATDGHR
Sbjct: 118 LPQMPEPIAQV-PVKTLASMIARTSFAISMEESRFTLNGALLLMRPEGLTM--VATDGHR 174

Query: 181 LAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESRIHLNIESLS 236
           LA  + +        K    +VP+KA+ E+ ++           V+  ++ +   I    
Sbjct: 175 LAYVQAEPAESGSADKPFRALVPKKAMSELTKLSDDAGEGAMAIVAGDDNHLFFQIGHRL 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  R + G FP+Y+ V+P  +    ++    +R A++RV+  +  R +A+++  +S ++ 
Sbjct: 235 LITRKLTGNFPDYERVLPKDHQFMAKLEKGEIRSAIERVAQFADERSRAIRVQFNSGEVR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + + G++ ES+   Y    ++I FN +YLL+ +  IS      D V F L    S+
Sbjct: 295 VFSSSVETGESEESVPAEYTGPDIEIGFNAQYLLDFLRAIS-----QDHVAFELKDQKSA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +R       +         YV+MPMRI
Sbjct: 350 GELRPAGDAIADQ------YRYVVMPMRI 372


>gi|318042961|ref|ZP_07974917.1| DNA polymerase III subunit beta [Synechococcus sp. CB0101]
          Length = 376

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 190/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKLVCSQAELNASLQLVSRAVAGRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV   G+IT+ A L  +IV ++   + IS   E E G +V ++    ++ ++  P  +F
Sbjct: 61  ASVHTSGAITLPARLFGEIVARMPSDSPISLSCE-EGGEQVELTSASGSYQMRGMPAEDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +     +L   VL   +  T FA +++E +  L G+   +N E L+    ATDG
Sbjct: 120 PELPLAQAATPIKLDPDVLAKGLRATLFASSSDEAKQLLTGVHLGLNAEGLE--CAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLS 236
           HRLAV  ++  A+      + VP +++ E+ R+LSS      V +     ++        
Sbjct: 178 HRLAVLRLENNAEGEAELDVTVPARSLRELERLLSSRSGGDPVSLFCDRGQVVFQFADQV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DK 294
           ++ R +DG +PNY+ +IP S  + L+++   L  A++RV++++      VK++      +
Sbjct: 238 LTSRSLDGTYPNYRQLIPESFARSLKLDRKGLLGALERVAVLADQHNNVVKITSDPVAGQ 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++ D  D+G   E++    +   + I FN +Y+LE +  +++     + V  R ++  
Sbjct: 298 LAISADAQDVGSGSEAIAADVSGDAIQIAFNVRYVLEGLKAMAA-----ERVELRCNAPT 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + V +  +D  +           Y++MP++I
Sbjct: 353 TPVVLAPQDDSA---------FTYLVMPVQI 374


>gi|189423084|ref|YP_001950261.1| DNA polymerase III subunit beta [Geobacter lovleyi SZ]
 gi|189419343|gb|ACD93741.1| DNA polymerase III, beta subunit [Geobacter lovleyi SZ]
          Length = 372

 Score =  335 bits (860), Expect = 6e-90,   Method: Composition-based stats.
 Identities = 114/389 (29%), Positives = 203/389 (52%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R   L+ L     I+E++ ++P+  ++L++A    LEI A+  E+ + G  PA 
Sbjct: 1   MNFKIDRDTFLKALQKVQGIVEKRTSMPILSNILIEAQGDNLEIIATDLEVGLKGNYPAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G ITV A  LY+IV++L +       KEN+    V I+ G   F +   P  EFP+
Sbjct: 61  VEKDGRITVGAKKLYEIVKELPNQEITFSTKEND---WVEITCGKVRFNIVGLPSDEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF--FHINEEDLKLCAVATDG 178
               +     EL +++L+ ++E+T +A+  +E +Y LNGIF     +E+   L  VATDG
Sbjct: 118 VATVKDEQLLELEAALLRKMIEKTSYAICNDETKYNLNGIFTRVEQSEKGQCLKMVATDG 177

Query: 179 HRLAVAEVDI--VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++A       A    +  +I+P+K + EI +I    D  ++    +S   +     +
Sbjct: 178 HRLSIASGPFSGTANPELLKGVILPKKGIFEIKKITDEGDGLLQFGFVDSSAVIKKGDTT 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RL+DGEFP+Y  VIP +N++ ++     L  AV R++I+SS + + + L +  + + 
Sbjct: 238 LIMRLVDGEFPDYTRVIPAANEQIVKAPREELIHAVRRMAILSSEKFKGIMLEIEGNAVK 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G A+E ++V Y+  P  + FN +YLL+++    S  V+      +  +  S 
Sbjct: 298 ISSSNPELGDAMEELDVSYDGNPFSVRFNARYLLDVLMVCESQHVL-----MKFKNELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +     D             V+MPMR+
Sbjct: 353 SIVTPDSDDEL---------LAVIMPMRL 372


>gi|288939766|ref|YP_003442006.1| DNA polymerase III subunit beta [Allochromatium vinosum DSM 180]
 gi|288895138|gb|ADC60974.1| DNA polymerase III, beta subunit [Allochromatium vinosum DSM 180]
          Length = 366

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 117/385 (30%), Positives = 202/385 (52%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    R  +L  L     ++ER+ T+P+  ++L+ A  G + +  +  E+E+  +  A 
Sbjct: 1   MEFVANREIVLPALNKVIGVVERRQTLPILGNLLVVARAGRVTLTGTDLEVEVKTSFEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G  T+ A  L DI R L +GA+I    ++E      ++ G   F L   P ++FP+
Sbjct: 61  IQQEGETTIPARKLVDICRNLSEGAEIRLRVKDE---RCVVTSGRGRFTLGLLPAADFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              EE  + F++  S LK L+++T FAMA +++RYYLNG+   ++     L AVATDGHR
Sbjct: 118 MDLEEGGFDFQIQESQLKRLLDKTAFAMAQQDVRYYLNGLLLELHAT--VLIAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA     +   +     +IVP K V E+ R L S D  + + LSE  + + + +++M+ +
Sbjct: 176 LAKFVTPLDLTLDTERQVIVPNKTVMELKRQLGSSDDPISIRLSERSLRVVVGAMTMTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+DG +P Y+ VIP  + +   V    L++A+ R SI+S+ + + V+LS     L +   
Sbjct: 236 LVDGRYPEYERVIPGHSGRTATVEKDALKRALSRTSILSNEKYRGVRLSFDPGTLKLLAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + + Y+  P+ I FN  YL++++  I      +  V+     +N S   R
Sbjct: 296 NPEQEEAEEEIELEYDGEPISIGFNVAYLMDVLGVID-----ETAVIIHFQDANGSSIWR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G   +S+          +V+MPMR+
Sbjct: 351 GVGGESE---------TFVVMPMRL 366


>gi|187735318|ref|YP_001877430.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC
           BAA-835]
 gi|187425370|gb|ACD04649.1| DNA polymerase III, beta subunit [Akkermansia muciniphila ATCC
           BAA-835]
          Length = 366

 Score =  335 bits (859), Expect = 9e-90,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 190/384 (49%), Gaps = 21/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ +   L+ L     ++  K T+P+  +V ++A +G +   A+  ++ ITG +PA+
Sbjct: 1   MKFTISKQVFLDGLRQVASVVSSKTTLPILSNVKIEAENGQVRFTATDLDVCITGVVPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T+ A  L  I+ +L +        +     +  +  G S F L   P  EFP 
Sbjct: 61  VLREGTVTLPAKKLVSIISELPEAEV---QVDVNQRNQAAVECGRSQFKLNGLPADEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    +++  ++L++ + RT +A++T+  RY LNGI       + K+  VATDG R
Sbjct: 118 LPSFEQATVYQVEQNMLRDCIRRTEYAISTDTTRYVLNGISLSFR--NGKMTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+AE  +     +    I+P KAVGE+ R+L  +  +V +  + ++    I    +  +
Sbjct: 176 LALAETALEFPEEQQLDAILPTKAVGELRRLL-DEVGTVTIRFTRNQAAFEINDTLLISK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG +PNY+ VIP    + + + C  L + V RVS++S  +   +KL+   ++L +   
Sbjct: 235 LIDGNYPNYRQVIPTDCKESIELPCGELLETVRRVSLLSVDKSTNIKLNFRENELEVASS 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+A ESM + Y+  P+ I FN  + +  +  ++ D V    +   L    S   ++
Sbjct: 295 AEGVGEAHESMTITYSGRPLSISFNPDFFMAPLKTMAGDTV----ITLNLIDEMSPGVLK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
             D+             YVLMPMR
Sbjct: 351 IGDE-----------FLYVLMPMR 363


>gi|120401030|ref|YP_950859.1| DNA polymerase III subunit beta [Mycobacterium vanbaalenii PYR-1]
 gi|119953848|gb|ABM10853.1| DNA polymerase III, beta subunit [Mycobacterium vanbaalenii PYR-1]
          Length = 398

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 95/398 (23%), Positives = 175/398 (43%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R D  + +    R +  + T+PV   VLL  +D  L I     E+     IPA +
Sbjct: 13  KFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTISGFDYEVSAEVQIPAEI 72

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L         +    GT V+++ G + F L + P  ++P+ 
Sbjct: 73  ASPGSVLVSGRLLSDIVRALPAKPVDVSVE----GTRVSLTCGSARFSLPTMPVEDYPTL 128

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                      +S +    + +   A   ++    L GI   I+ E  K+   ATD  RL
Sbjct: 129 PTLPDETGVV-SSDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 185

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+      A    +++VP K + E  +  +  +  V ++L        E  + +  +
Sbjct: 186 AVRELTWSTGAAGVEAAVLVPAKTLAEAAKAGTDGNE-VHLALGAGPSVGKEGLLGIRSK 244

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++  +  
Sbjct: 245 GKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVA-DRGAQVRMEFADG 303

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V ++  P+ I FN  YL + + ++ +     + V F   + 
Sbjct: 304 VLRLSAGADDVGRAEEDLPVEFSGDPLTIAFNPTYLTDGLSSLHA-----ERVTFGFTTP 358

Query: 354 NSSVFIRGKDKD------SKNNKDNKVNAFYVLMPMRI 385
           +    +R   +D      S      + +  Y+LMP+R+
Sbjct: 359 SRPAVLRPAAEDDGGAGGSGPFPAAQTDYVYLLMPVRL 396


>gi|307825355|ref|ZP_07655574.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96]
 gi|307733530|gb|EFO04388.1| DNA polymerase III, beta subunit [Methylobacter tundripaludum SV96]
          Length = 366

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 115/385 (29%), Positives = 202/385 (52%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R +IL  L     +IE++ T+P+  +VL+   +  L +  +  EI+I   I  +
Sbjct: 1   MKFIINREEILVPLQQIVSVIEKRQTMPILSNVLMVIEENQLILTGTDLEIQIIAKINIA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSITV A    DI R L +GA+I F  +++   +V I+   S F L   P   +P 
Sbjct: 61  TATPGSITVPARKFLDICRLLPNGAEIKFELQDD---KVKIASSRSRFSLSCLPADNYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      + +   K  +++T F MA +++RYYLNG+  +++   LKL  VA+DGHR
Sbjct: 118 FAESELENHLFINAGKFKKALDKTVFCMANQDVRYYLNGLLLNVSNSKLKL--VASDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++ E ++         II+PRK V E+ R+L   ++ +KV  S + I + I++L  S +
Sbjct: 176 LSIYEDNLDQATGFEARIILPRKGVLELNRLLDDPEAELKVEFSSNNIRIFIKNLIFSAK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+D ++P++  V       ++ +    L++A+ RV+I+S+ + + V   +  D L ++  
Sbjct: 236 LVDSKYPDFGKVFQQEFFNQIHIQKQILKEALTRVAILSNEKFKGVTFDIKPDSLKISTH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E + + Y   P+ I FN +YLL+ + N+ S+       V  + S+ SS FI 
Sbjct: 296 NPEHDEAEEELFIEYTGEPLTIAFNAQYLLDAVSNLDSEL-----AVLTIASNASSCFI- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                   ++       +++MPMR+
Sbjct: 350 --------DEPGDCGYKFIVMPMRL 366


>gi|253698658|ref|YP_003019847.1| DNA polymerase III subunit beta [Geobacter sp. M21]
 gi|251773508|gb|ACT16089.1| DNA polymerase III, beta subunit [Geobacter sp. M21]
          Length = 372

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/389 (27%), Positives = 204/389 (52%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + +   ++ L     I+E++NT+P+  + LL+  +  L I A+  E+ +  + P +
Sbjct: 1   MEFRISKEIFMKALQRIQGIVEKRNTMPILSNALLEVQNDQLFITATDLEVGMKSSYPTA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G ITVSA  LY+IV+++ D       K+N+    V I+ G + F +      EFP 
Sbjct: 61  AIREGKITVSAKKLYEIVKEMPDEEIHFTTKDND---WVEITCGKARFNIVGLSSEEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             + +        + +L +++E+T +A+  +E +Y LNG+F    +E+ +  L  VATDG
Sbjct: 118 FPKVKEESFLVFKNEILADMIEKTSYAICYDETKYNLNGVFIKAFDENGENVLKMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL+V++  I   I    S  +I P+K + E+ +++  +   + +   ++   +   +  
Sbjct: 178 HRLSVSQKAITGNITSELSKGVIFPKKGIFELKKMVEEESGEIMLGFMDNSAVIKKGNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDGEFP+Y  VIP SND+ +++N      ++ R++I+SS + + VK+ ++ + + 
Sbjct: 238 VVMRLIDGEFPDYTKVIPASNDRIVQINRDKFLHSLKRMAILSSEKFKGVKIEVNPELVI 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G+A E + V Y    +   FN KYL++++  +        EV  +L    S 
Sbjct: 298 ISSSNPELGEAREEIEVQYEGNSISARFNAKYLIDVLSVMEQR-----EVELKLKDELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V ++   ++             V+MPMR+
Sbjct: 353 VIMKAAAEEE---------FLAVIMPMRL 372


>gi|296137753|ref|YP_003644996.1| DNA polymerase III subunit beta [Tsukamurella paurometabola DSM
           20162]
 gi|296025887|gb|ADG76657.1| DNA polymerase III, beta subunit [Tsukamurella paurometabola DSM
           20162]
          Length = 396

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 164/399 (41%), Gaps = 28/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V   +  E +    R +  +  +PV   VLL A D  L +     E+     + A 
Sbjct: 10  MKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTVSGFDYEVSAQVRVGAE 69

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI + L +             T V IS G + F L + P  ++P 
Sbjct: 70  VADEGQVLVSGRLLADITKALPNKP----VDVELDVTRVAISCGSAKFSLPTMPVEDYPQ 125

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +  S+    + +   A   ++    L GI   I  E  ++   ATD  R
Sbjct: 126 LPELPQ-QTGAIERSMFAEAISQVAIAAGKDDTLPMLTGIRVEI--EGQRVVLAATDRFR 182

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232
           LAV E D   Q      +++VP K + E  +  +  DS V ++L        +  + +  
Sbjct: 183 LAVREFDWQPQSGDVKAAVLVPAKTLSEAAKTFA-GDSEVGIALGAGSAVGADGLLGVVG 241

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+D +FP ++ ++P S+     +    L +A+ RV++++  R   V++    
Sbjct: 242 PDRRTTTRLLDADFPKFRQLLPASHTAIATMEIAPLLEAIKRVALVA-DRGAQVRMEFGD 300

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++    D GKA E +   +   P+ I FN  YL + +  I +     D V F   +
Sbjct: 301 GTLRLSAGGDDAGKAEEELPADFQGEPLTIAFNPGYLQDGLAAIHT-----DSVTFGFTT 355

Query: 353 SNSSVFIRG------KDKDSKNNKDNKVNAFYVLMPMRI 385
            +    +R       +  DS      +    Y+LMP+R+
Sbjct: 356 PSRPAVLRPTVENAFQPDDSGAFPAPQSAYTYLLMPVRL 394



 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 26/188 (13%), Positives = 69/188 (36%), Gaps = 16/188 (8%)

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  +      F +        V     ++ +      L G+     ++ L +     D  
Sbjct: 2   SLPKGSVGMKFRVPHEEFAESVAWVARSLPSRPPVPVLGGVLLTAGDDGLTVSGF--DYE 59

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
             A   V   A++A    ++V  + + +I + L +K   V V L  +R+ ++  S   S+
Sbjct: 60  VSAQVRV--GAEVADEGQVLVSGRLLADITKALPNK--PVDVELDVTRVAISCGSAKFSL 115

Query: 240 R-LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSD 293
             +   ++P     +P    +   +  +   +A+ +V+I +           +++ +   
Sbjct: 116 PTMPVEDYPQ----LPELPQQTGAIERSMFAEAISQVAIAAGKDDTLPMLTGIRVEIEGQ 171

Query: 294 KLCMTVDN 301
           ++ +   +
Sbjct: 172 RVVLAATD 179


>gi|39995112|ref|NP_951063.1| DNA polymerase III subunit beta [Geobacter sulfurreducens PCA]
 gi|39981874|gb|AAR33336.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens PCA]
 gi|298504142|gb|ADI82865.1| DNA polymerase III, beta subunit [Geobacter sulfurreducens KN400]
          Length = 372

 Score =  334 bits (858), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 106/389 (27%), Positives = 201/389 (51%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R      L     I+E++NT+P+  +VL++A +  +E+ A+  E+ +  + P +
Sbjct: 1   MEFTIDRDTFSRALQKIQGIVEKRNTMPILSNVLIEALEDRIELTATDLEVGMKSSYPTT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  LY+IV++L D       K N+    V I  G + F +      EFP 
Sbjct: 61  VASQGKITVSAKKLYEIVKELPDETISFLTKANDY---VEIRCGKAKFTIVGLSSEEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +        + S +L +++E+T +A+  +E +Y LNG F   +EED +  L  VATDG
Sbjct: 118 FPKVNEESFIRIESGLLADMIEKTSYAICFDETKYNLNGTFVKASEEDGRSILRMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++ + +    ++   +  +I P+K + E+ ++   + + + +   ++   +   +  
Sbjct: 178 HRLSITQREFNGAVSPEMAKGVIFPKKGIFELKKMCEEESTQLSLGFLDNSAVIVKGNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RL+DGEFP+Y  V+P +ND+ + V       ++ R+SI+SS + + +K+ +    + 
Sbjct: 238 VVMRLVDGEFPDYTRVVPVANDRIVTVARDPFFHSLRRMSILSSEKFKGIKMDIQESGMV 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G+A E ++  +    + I FN KYL++++  +      +  V   L    S 
Sbjct: 298 ISSSNPELGEASEELDAVFAGDAISIRFNAKYLIDVLAVLD-----ESSVALHLKDELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +R  D D             V+MPMR+
Sbjct: 353 AIVRPADGD---------GFTAVIMPMRL 372


>gi|325267546|ref|ZP_08134198.1| DNA-directed DNA polymerase III beta subunit [Kingella
           denitrificans ATCC 33394]
 gi|324980896|gb|EGC16556.1| DNA-directed DNA polymerase III beta subunit [Kingella
           denitrificans ATCC 33394]
          Length = 367

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 113/380 (29%), Positives = 198/380 (52%), Gaps = 21/380 (5%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66
           R D+L+ L     I+ERK+T+P+  ++LLQ+ +G +++ A+  EI+I             
Sbjct: 8   RDDLLKPLQAVTGIVERKHTLPILSNILLQSENGQVQLLATDLEIQIHTLGAQGAQPDFR 67

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEE 125
           IT +A  L DI+R L D + +     +    ++ +  G S F LQ+ P  +FP+   +E 
Sbjct: 68  ITTNAKKLQDILRALPDSSTVQLDLADH---KLTLKAGKSRFNLQTLPAQDFPTMNVDEN 124

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F L    LK+++ +   +MA ++IR+YLNG+        L+L  VATDGHRLA   
Sbjct: 125 TSAAFALPQETLKHMISQVQHSMAVQDIRFYLNGLLMQTEGNQLRL--VATDGHRLAFTS 182

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
             +  ++ K   +I+PRK V E+ ++L+    +V V L +++I        +  ++IDG 
Sbjct: 183 ATLETELPK-HDVILPRKTVLELNKLLTQPKENVVVELLDNQIRFRCNDTVIVSKVIDGR 241

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           FP+Y  VIP  N     ++  +L  A++R SI+++ + + V+L +    L +T  N +  
Sbjct: 242 FPDYNRVIPMDNKNIFVIDRLSLLGALERSSILANEKFRGVRLLVQPGSLHITCTNNEQE 301

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
           +A E +++ Y    +D+ FN  +LL+++ N+ S     DEV     S++ +         
Sbjct: 302 EASEELDIAYQGESLDVGFNITFLLDLLRNVHS-----DEVQLAFGSADRATLFTVP--- 353

Query: 366 SKNNKDNKVNAFYVLMPMRI 385
                 N+    YV+MPMRI
Sbjct: 354 ------NRPEFKYVVMPMRI 367


>gi|91774358|ref|YP_544114.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT]
 gi|91708345|gb|ABE48273.1| DNA polymerase III, beta subunit [Methylobacillus flagellatus KT]
          Length = 367

 Score =  334 bits (857), Expect = 1e-89,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 210/387 (54%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+ER++T+P+  ++LL+A    +++ A+  E++I+ ++ ++
Sbjct: 1   MNIKINRDTLLKPLSSVSSIVERRHTLPILSNLLLEAKQDKIKLTATDLEMQISLSVDSA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                S T+SA  L DI R L + A+I+   ++   + + +  G S F LQ+ P  ++P 
Sbjct: 61  AGGELSTTISAKKLLDICRSLPENAEITMATQD---SRIQVKTGKSRFNLQTLPAGDYPL 117

Query: 121 TKEEEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             + E   S   ++    LK L ++  FAMA ++IRYYLNG+ F +N    +L  V TDG
Sbjct: 118 MTKTEDASSTLIKIGQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+    ++ +   K   II+PRK V E++++L   +  V + L+  + +     + + 
Sbjct: 176 HRLSFTSTELASSYEKQE-IILPRKTVIELIKLLDESEDEVTIELANGQANFAFGDIHLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  +     V+ T +  ++ R SI+S+ + + +++ LS++ L + 
Sbjct: 235 SKVIDGKFPDYTRVIPTGHQNSFSVDRTMILLSMQRASILSNEKYRGIRMVLSANSLKLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y    +DI FN  Y++++++N  S     + V F    +NSS  
Sbjct: 295 STNSEQEEAEEELEISYGGSNLDIGFNVTYMIDVLNNSDS-----ESVTFSFADANSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  ++ D         N  YV+MPMRI
Sbjct: 350 VTVENDD---------NYKYVVMPMRI 367


>gi|302035396|ref|YP_003795718.1| DNA polymerase III subunit beta [Candidatus Nitrospira defluvii]
 gi|300603460|emb|CBK39790.1| DNA polymerase III, beta subunit [Candidatus Nitrospira defluvii]
          Length = 376

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 116/393 (29%), Positives = 195/393 (49%), Gaps = 25/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R ++L  L     ++E++NT+P+  ++LL+A     EI A+  EI + G   A+
Sbjct: 1   MKVRIGREELLTGLQRVQGVVEKRNTMPILSNILLEAKHDGAEIVATDLEIGMRGLYKAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G +T+SA  LY+I+++L  G       +N   T   I  G S F +   P  ++P+
Sbjct: 61  VLEAGGVTISARKLYEIIKELPSGEIELTSGDNNWTT---IQSGKSQFKVVGLPSGDYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL---CAVATD 177
               E      LA + L  L+ +T FA    + RY LNG+   +   + K      V TD
Sbjct: 118 LPSIEREGLTPLAGAGLLELIRKTLFAAGDNDARYILNGLLVSLTTTEKKTTLLRLVGTD 177

Query: 178 GHRLAVAEVDIVAQIAKMPS----IIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNI 232
           GHRLAVAE ++    AK P+     I+P+KA  E+ R+L    D    +  +++ +    
Sbjct: 178 GHRLAVAEREVGTPNAKQPAQDIKAIIPKKAAQEMRRLLEEGGDEEPLIGFTKNLMIFRK 237

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             L ++ RL++G +PNYQ V+P  + K + VN   L  A+ RVS++S  +  AVK+S + 
Sbjct: 238 SGLLLTSRLMEGNYPNYQQVVPKESGKRIAVNRGLLESALRRVSVLSKDKANAVKVSFAP 297

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             + +   NPD G+A E +   Y    +   FN +YLL+ +  +       + V  ++D+
Sbjct: 298 GGMTLFSSNPDYGEATEELVARYEGEALHTGFNARYLLDALSVMDG-----ESVSLQMDT 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + S   I+  +               V+MP++I
Sbjct: 353 ALSPCLIQEAESP---------GFKCVVMPIKI 376


>gi|326387150|ref|ZP_08208760.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens
           DSM 19370]
 gi|326208331|gb|EGD59138.1| DNA polymerase III subunit beta [Novosphingobium nitrogenifigens
           DSM 19370]
          Length = 356

 Score =  334 bits (856), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 147/374 (39%), Positives = 225/374 (60%), Gaps = 25/374 (6%)

Query: 18  CRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLY 75
             ++ER+NTIP+  +VL+ A   G +++ A+  +++I  ++PA SV+V G+ITVSAHLL+
Sbjct: 2   QSVVERRNTIPILSNVLIDAAATGSVKLMATDLDLQIIESMPAVSVEVPGAITVSAHLLF 61

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135
           DI RKL DG+Q+S    +     + +  G S F L + P  +FP   E +   SFE+ + 
Sbjct: 62  DIARKLPDGSQVSLETAD---NRMIVKAGRSRFQLPTLPRDDFPVIVEGDLPTSFEIPAR 118

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
            L  L++RT FA++TEE RYYLNGIFFH+++E LK  A ATDGHRLA   +        M
Sbjct: 119 TLAELIDRTRFAISTEETRYYLNGIFFHVSDEVLK--AAATDGHRLARYTLPRPEGAEGM 176

Query: 196 PSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES---LSMSVRLIDGEFPNYQN 251
           P +I+PRK VGE+ ++L    D++V V LS S++   +     + ++ +LIDG FP+Y  
Sbjct: 177 PDVIIPRKCVGELRKLLEDVLDTNVLVDLSASKVRFTLGGEFGVVLTSKLIDGTFPDYSR 236

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311
           VIP  NDK LR++  +  + VDRV+ +++ + +AVK++L +D++ ++V +PD G A E +
Sbjct: 237 VIPTGNDKLLRLDPRSFFEGVDRVATIATEKTRAVKMALDTDRVTLSVTSPDNGTAAEEL 296

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
              Y     +I FN  YL +I+  I  D      V   L  +++   IR         KD
Sbjct: 297 PADYQASGFEIGFNANYLKDILSQIDGDL-----VELHLADASAPTLIR---------KD 342

Query: 372 NKVNAFYVLMPMRI 385
           +K  A YVLMPMR+
Sbjct: 343 DKSPALYVLMPMRV 356


>gi|297717814|gb|ADI50050.1| DNA polymerase III beta subunit [Candidatus Odyssella
           thessalonicensis L13]
          Length = 375

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 135/390 (34%), Positives = 229/390 (58%), Gaps = 20/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER D L+ L H   ++E++ T+P+  HVL+QA D  L +  +  ++ +  +IPA 
Sbjct: 1   MKFAVERGDFLKALAHGGSVVEKRTTVPILSHVLIQAEDSQLHLTTTDMDLALVESIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GSITVSAH+L +IVRKL DG +I     N+   ++ +  G S F + + P  +FP 
Sbjct: 61  VEAPGSITVSAHMLLEIVRKLPDGVKIEATL-NQANDQLTLKAGKSRFNIATLPAEQFPK 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             + +  +SF+L +  L+ L++R+ FAM+TEE RY+LNGI+FH +E + +    +VATD 
Sbjct: 120 LTQNDLPFSFKLTAEKLRYLIDRSRFAMSTEETRYFLNGIYFHAHEINGQKVFRSVATDA 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLNIESLS 236
           HRLA  EV +      +P IIV RK + EI ++++ +  ++ + +SLS  R+   +   +
Sbjct: 180 HRLACIEVPVPEGAESIPGIIVGRKTITEIRKLINDENPEAEITISLSPQRVEFKLPQAT 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +S RL+DG +P+Y+  IP  NDK + V+  +  +AVDRV+ +++ ++  +K+S++ +KL 
Sbjct: 240 LSSRLVDGTYPDYEQAIPKGNDKPVIVDAKDFAKAVDRVATVTTDKLPVIKISVAKNKLT 299

Query: 297 MTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +   + ++G A E M V +     ++I FN  YL++I     + ++ D+     L   ++
Sbjct: 300 LVAASSELGDATEEMEVDFPFDHSIEIGFNANYLVDI-----TSQIGDEAAEILLSDGSA 354

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I+G          N   A +VLMPMR+
Sbjct: 355 PAIIKGI---------NDKEALFVLMPMRV 375


>gi|317968477|ref|ZP_07969867.1| DNA polymerase III subunit beta [Synechococcus sp. CB0205]
          Length = 376

 Score =  333 bits (855), Expect = 2e-89,   Method: Composition-based stats.
 Identities = 98/391 (25%), Positives = 190/391 (48%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKLVCSQAELNSSLQLVSRAVAARPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV   G+IT+ A L  +IV ++   + I+   E E   +V ++    ++ ++  P  +F
Sbjct: 61  ASVATSGAITLPARLFGEIVSRMPADSPITLSCE-EGSEQVELTSLSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +     +L   VL   +  T FA + +E +  L G+   +++  L+    ATDG
Sbjct: 120 PELPLAQAGTPIKLDPEVLIKGLRATLFASSGDEAKQLLTGVHLGLDQNGLE--CAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236
           HRLAV  +   +       + VP +++ E+ R+LSS+  S  VSL     ++        
Sbjct: 178 HRLAVLRLQNASSSEAELDVTVPARSLRELERLLSSRGGSDAVSLFCDRGQVVFQWADQV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DK 294
           ++ R +DG +PNY+ +IP S  ++L+V+   L +A++RV++++      VKL+      +
Sbjct: 238 LTSRSLDGTYPNYRQLIPESFGRQLQVDRKGLLRALERVAVLADQHNNVVKLTSDPAAGQ 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++ D  D+G   E++    +   + I FN +Y+LE +  +       ++V  + ++  
Sbjct: 298 LSISADAQDVGSGSEAIGAQVSGDAIQIAFNVRYVLEGLKAMGC-----EQVQLQCNAPT 352

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + V +  +D  S           Y++MP++I
Sbjct: 353 TPVVLAPQDDSS---------FTYLVMPVQI 374


>gi|253997715|ref|YP_003049778.1| DNA polymerase III subunit beta [Methylovorus sp. SIP3-4]
 gi|253984394|gb|ACT49251.1| DNA polymerase III, beta subunit [Methylovorus sp. SIP3-4]
          Length = 367

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 206/387 (53%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+ER++T+P+  ++LL+A D  + + A+  E++I+ A+   
Sbjct: 1   MNIKINRDTLLKPLSSVTSIVERRHTLPILSNLLLEAKDEKIVLTATDLEMQISLALQTP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    S T+SA  L DI R L + A+I+        + + +  G S F LQ+ P +++P 
Sbjct: 61  VGGELSTTISAKKLLDICRSLPENAEITMATAE---SRIQVKTGKSRFNLQTLPAADYPV 117

Query: 121 TKEEEYVYS--FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +          +    LK L ++  FAMA ++IRYYLNG+ F +N    +L  V TDG
Sbjct: 118 MTKATGTTYTVVTIDQKSLKRLFKQVEFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+    ++ AQ  +   +I+PRK V E++++L   +  V + ++  +++ +   + + 
Sbjct: 176 HRLSFTSTEL-AQSYEKQELILPRKTVIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y  VIP  +     V+   +  A+ R SI+S+ + + +++ L SD L + 
Sbjct: 235 SKVIDGKFPDYTRVIPVGHKNSFNVDRMTILLAMQRASILSNEKYRGIRMVLGSDSLRLI 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y    +DI FN  Y++++++N++      D V F    +NSS  
Sbjct: 295 STNSEQEEAEEELEIAYAGDSLDIGFNVTYMIDVLNNVNC-----DSVTFSFADANSSCL 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D ++           YV+MPMRI
Sbjct: 350 VTVADDET---------YKYVVMPMRI 367


>gi|312794751|ref|YP_004027673.1| DNA polymerase III, beta chain [Burkholderia rhizoxinica HKI 454]
 gi|312166526|emb|CBW73529.1| DNA polymerase III, beta chain (EC 2.7.7.7) [Burkholderia
           rhizoxinica HKI 454]
          Length = 401

 Score =  333 bits (855), Expect = 3e-89,   Method: Composition-based stats.
 Identities = 103/388 (26%), Positives = 197/388 (50%), Gaps = 23/388 (5%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++   ER  +L  L     I+ER++T+P+  ++L+  N   +   ++  E++IT     
Sbjct: 34  MQLVKTERDTLLRPLQTVSGIVERRHTLPILANLLISKNGPDVSFLSTDLELQITTRADF 93

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            + +   + TV+A  L DI+R +  G       +      + +  G S F LQ+    EF
Sbjct: 94  GIGNEQVATTVAARKLVDILRAMPIGDVTLTLSDK----RLTVQSGKSRFALQTLAADEF 149

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + +++  +  +     K L+   HFAMA ++IRYYLNG+   ++ +  +L AVATD
Sbjct: 150 PTLAQAKDFGANLSVPQKTFKQLLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATD 207

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA + +      A+   +I+PRK + E+ R+L   D  + + ++ +++      + +
Sbjct: 208 GHRLAFSSMKTDGAFARQE-VIIPRKTILELQRLLEDIDDPLTIDIASTQVKFTFGQVEL 266

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++Q VIP  +     +    L+ ++ R +I++S + + V+  ++  +L +
Sbjct: 267 VSKLVEGKFPDFQRVIPKGHKNTFMIGRDELQHSLQRAAILTSDKFKGVRCIVAPGQLKI 326

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N D  +A E + + Y    +D+ FN  YLL+++ N+  D +   +V      + SS 
Sbjct: 327 MSTNADQEEAQEELEIAYQGDTLDVGFNVTYLLDVLANLKVDMI---QVALG-SDATSSA 382

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + +            YV+MPMRI
Sbjct: 383 LITIPENEQ---------FKYVVMPMRI 401


>gi|253995376|ref|YP_003047440.1| DNA polymerase III subunit beta [Methylotenera mobilis JLW8]
 gi|253982055|gb|ACT46913.1| DNA polymerase III, beta subunit [Methylotenera mobilis JLW8]
          Length = 366

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 206/386 (53%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + R  +L+ L     I+E+++T+P+  ++LL+A    + + A+  E++I+ ++ ++
Sbjct: 1   MNIQINRETLLKPLTSVTSIVEKRHTLPILSNLLLEAKQNKIHLTATDLEMQISLSVDSA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                S T+SA  L DI R L D + I+    +   + + +  G S F LQ+ P +++P 
Sbjct: 61  TSNDFSTTISAKKLLDICRSLPDNSDINMATND---SRITVKAGKSRFNLQTLPAADYPV 117

Query: 121 TKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + +   +   +    LK L+++  FAMA ++IRYYLNG+   +     +L  V TDGH
Sbjct: 118 MTKTQSQGTVITIPQRQLKELLKQVEFAMAQQDIRYYLNGLLVEVVAN--RLNIVGTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+    ++     K   +I+PRK V E++++L   +  V V ++ ++++ +  ++ +  
Sbjct: 176 RLSFTSTELKENYEKQ-DVILPRKTVIELIKLLDDSEEDVNVEIANNQVNFSFGNIRLIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG+FP+Y  VIP  +          +  A+ R SI+S+ + + +++ LS++ L +  
Sbjct: 235 KVIDGKFPDYNRVIPTGHQNTFTTERLGVLLAMQRASILSNEKYRGIRMVLSNNNLKLIS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  +A E + + Y    +DI FN  YL+++++N +S     ++V F    +NSS  I
Sbjct: 295 TNSDQEEAEEELEIAYGSDALDIGFNVTYLIDVLNNTNS-----EQVTFSFADANSSCLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       N  +  YV+MPMRI
Sbjct: 350 TLP---------NNPDYKYVVMPMRI 366


>gi|264676138|ref|YP_003276044.1| DNA polymerase III subunit beta [Comamonas testosteroni CNB-2]
 gi|299530929|ref|ZP_07044343.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44]
 gi|262206650|gb|ACY30748.1| DNA polymerase III, beta subunit [Comamonas testosteroni CNB-2]
 gi|298721150|gb|EFI62093.1| DNA polymerase III, beta subunit [Comamonas testosteroni S44]
          Length = 373

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 198/389 (50%), Gaps = 25/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + T+ A  L DI++ +     +S   +    +++ +  G S F LQ+ P  +FP  
Sbjct: 64  AGDFTTTIGARKLIDILKTMPGDQTVSLETQ---QSKMILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  +F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHR
Sbjct: 121 QESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  ++     +I+PRK V E+ R+LS         +++  + ++       + 
Sbjct: 179 LAWASATLDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGME 238

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+LS+    L 
Sbjct: 239 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLR 298

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A++ +++ Y    ++I FN  YL++++ N+S      D V   L   NSS
Sbjct: 299 VASNNAEQEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMS-----QDMVKIDLQDGNSS 353

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   + +S           YV+MPMRI
Sbjct: 354 ALVTIPENES---------FKYVVMPMRI 373


>gi|221069746|ref|ZP_03545851.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1]
 gi|220714769|gb|EED70137.1| DNA polymerase III, beta subunit [Comamonas testosteroni KF-1]
          Length = 373

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 197/389 (50%), Gaps = 25/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAVLQSVAGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + T+ A  L DI++ +     +S   +     ++ +  G S F LQ+ P  +FP  
Sbjct: 64  AGDFTTTIGARKLIDILKTMPGDQTVSLETQ---QAKMILKGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +  +F +   VLK+L+ +  FAMA ++IRYYLNGI F      L L  VATDGHR
Sbjct: 121 QESAAFGPAFSVPQKVLKDLLGQVSFAMAVQDIRYYLNGILFVAEGNTLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  ++     +I+PRK V E+ R+LS         +++  + ++       + 
Sbjct: 179 LAWASATLDVEVPIKQEVILPRKTVLELQRLLSDASGENQPVIEMQFANNQAKFTFGGME 238

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+LS+    L 
Sbjct: 239 FVTKLVEGKFPDYNRVIPRNHTNSVTLGRAPLLASLQRTAIMTSDKFKGVRLSVEPGTLR 298

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A++ +++ Y    ++I FN  YL++++ N+S      D V   L   NSS
Sbjct: 299 VASNNAEQEEAMDELDIDYGGDTIEIGFNVTYLIDVLTNMS-----QDMVKIDLQDGNSS 353

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   + +S           YV+MPMRI
Sbjct: 354 ALVTIPENES---------FKYVVMPMRI 373


>gi|300781939|ref|YP_003762230.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
 gi|299791453|gb|ADJ41828.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
          Length = 377

 Score =  332 bits (853), Expect = 4e-89,   Method: Composition-based stats.
 Identities = 98/392 (25%), Positives = 172/392 (43%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA----NDGLLEIKASGPEIEITGA 56
           MKI VER  + + +    R +  +  +PV   VLL A        L +     E+  T  
Sbjct: 1   MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGSDGETDALTVSGFDYEVSATVG 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +PA++   G + VS  LL DI + L              G    I+ G + F L + P  
Sbjct: 61  VPATIADGGRLLVSGRLLADITKALPAQPVEISVD----GARATITCGTARFSLPTMPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P     +  ++ ELA       V +   A   ++    L G+   I+   L L  VAT
Sbjct: 117 DYPQLPS-QPAFAGELAGDAFGQAVTQVVVAAGKDDTLPMLTGMRLEISGSSLTL--VAT 173

Query: 177 DGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIE 233
           D  RLA+ E     A+     +++VP + + E  + L +  ++++++L   E  + L+  
Sbjct: 174 DRFRLAMREFTWQPAEGLADAAVLVPARTLAEAAKTLGASGATIRLALASGEGLLGLSGS 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP Y+ ++P S+     ++ + L +++ RVS+++  R   V+L    +
Sbjct: 234 GRYTTTRLLDAEFPPYRQLLPASHSSRAVIDVSALTESIKRVSLVA-ERGTQVRLEFGDN 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D G A E + V Y   P+ I FN  YL++ +  + S     D       + 
Sbjct: 293 TLRLSAGGDDEGSAEEELQVEYEGEPVTIAFNPGYLVDGLGALHS-----DRAELTFTTP 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           N    I+  D +            Y+LMP+R+
Sbjct: 348 NRPALIKPADAEGNVVP----GYLYLLMPVRL 375


>gi|222053119|ref|YP_002535481.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32]
 gi|221562408|gb|ACM18380.1| DNA polymerase III, beta subunit [Geobacter sp. FRC-32]
          Length = 372

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 111/389 (28%), Positives = 211/389 (54%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ +    + L     I+E++NT+P+  + L++A++GLL I A+  E+ +  + P +
Sbjct: 1   MEFSISKETFTKALQKIQGIVEKRNTMPILSNALIEASNGLLHITATDLEVGMKSSYPVT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G ITV+A  +Y+I+++L D       KEN+    + I  G ++F +      EFP 
Sbjct: 61  IAKEGKITVAAKKIYEIIKELSDEEITFSTKEND---WIEIHCGKAHFNIVGLSPDEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +        L+++ L  ++E+T +A+ T+E ++ LNGIF     E+ +  +  VATDG
Sbjct: 118 FPKVNDNIFVNLSNNFLSEMIEKTSYAICTDESKFNLNGIFIKAASEEGRNVIRMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL+V   +    I+   S  +I P+K + E+ +I   +   + +   ++   +  ++  
Sbjct: 178 HRLSVTNKEFEGAISNELSKGVIFPKKGIYELKKIAEEESGDIMMGFMDNSAVIKKDNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDGEFP+Y  VIP +NDK++ V+   L  ++ R++I+SS + + +KL + S  + 
Sbjct: 238 IVMRLIDGEFPDYTKVIPANNDKKVTVSREALLHSLRRMAILSSEKFKGIKLDVRSGSIE 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G A E   V Y+  P+ + FN +YL++++  +      DD+V   L    S 
Sbjct: 298 ISSSNPELGDAREEQEVLYDGTPLSVRFNARYLIDVLTVLR-----DDQVELDLRDELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++   KD         +   V+MPMR+
Sbjct: 353 IIMKPIAKD---------DFMSVIMPMRL 372


>gi|88798538|ref|ZP_01114122.1| DNA polymerase III subunit beta [Reinekea sp. MED297]
 gi|88778638|gb|EAR09829.1| DNA polymerase III subunit beta [Reinekea sp. MED297]
          Length = 369

 Score =  332 bits (852), Expect = 5e-89,   Method: Composition-based stats.
 Identities = 118/386 (30%), Positives = 215/386 (55%), Gaps = 21/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           + ++ R  +L+ L     ++E++ T+PV  +VLL+     L +  +  E+E+ G +  S 
Sbjct: 3   QFSLAREQLLKPLQLVSGVVEKRQTLPVLSNVLLEVEGNQLALTGTDLEVELIGRVELSE 62

Query: 62  -DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ITV A    DIVR L + A IS  +  +    V ++ G S F L S P +EFP+
Sbjct: 63  PASDGAITVPAKKFLDIVRSLPEDAIISLQQTED---RVQVASGRSKFTLSSLPATEFPN 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +++E    + L  ++L  L++ T FAMA +++RYYLNG+   +N+  ++   V+TDGHR
Sbjct: 120 IEQDENAQEYRLPQNLLSQLIDATAFAMAQQDVRYYLNGMSVELNQSLVR--TVSTDGHR 177

Query: 181 LAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA++   +    + +   +IVPRK + E+ R+LS  D  V++ +  + +    +  + + 
Sbjct: 178 LAMSSRHVDGLNVPERKQVIVPRKGILELNRLLSDDDQPVQLYIGSTHLRTTTDEFTFTT 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG+FP+Y+ VIP   DKE+  +   ++    R +I+++ + + V++SLS   L +  
Sbjct: 238 KLVDGKFPDYERVIPRGGDKEVVGDRQVMKAIFSRAAILANEKYRGVRMSLSEGSLVVKA 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A  ++ V Y+   +++ FN  YLL++++ I       ++V F L  +NSS  +
Sbjct: 298 NNPEQEEAEVAVEVDYSGPELEVGFNVSYLLDVMNVIRG-----EQVRFVLADANSSALL 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D DS         + YV+MPMR+
Sbjct: 353 TDFDDDS---------SMYVVMPMRL 369


>gi|148262087|ref|YP_001228793.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4]
 gi|146395587|gb|ABQ24220.1| DNA polymerase III, beta subunit [Geobacter uraniireducens Rf4]
          Length = 372

 Score =  332 bits (852), Expect = 6e-89,   Method: Composition-based stats.
 Identities = 109/389 (28%), Positives = 207/389 (53%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V +    + L     I+E++NT+P+  + L++A++  L I A+  E+ +  + P +
Sbjct: 1   MEFRVAKDTFTKALQKIQGIVEKRNTMPILSNTLIEAHNDTLYITATDLEVGMKSSYPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ITVSA  +Y+I+++L D   +   KEN+    V I  G ++F +      EFP 
Sbjct: 61  VIKEGKITVSAKKIYEIIKELSDEEIVFSTKEND---WVEIHCGKAHFNIVGLSPDEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +        L + +L  ++E+T +A+  +E ++ LNGIF     E+ +  L  VATDG
Sbjct: 118 FPKINDNSFITLNNQILSEMIEKTSYAICNDETKFNLNGIFIKATTENERNVLRMVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL+V E ++   I+   +  +I P+K + E+ ++   +   + +   ++   +   +  
Sbjct: 178 HRLSVTEKELSGNISNELNKGVIFPKKGIFELKKMTEEEIGDIMLGFMDNSAVIKKGNTV 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDGEFP+Y  VIP +NDK +++   +L  ++ R++I+SS + + +KL + +  + 
Sbjct: 238 IVMRLIDGEFPDYTKVIPTNNDKIIKILRESLLHSLRRMAILSSEKFKGIKLDVRNGSVE 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP++G A E + V Y   P+ + FN +YL++++  +      +DEV   L    S 
Sbjct: 298 ISSSNPELGDAREELEVDYQGEPLSVRFNARYLIDVLTILK-----EDEVELNLRDELSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++            K +   V+MPMR+
Sbjct: 353 IIMKPA---------AKNDFMSVIMPMRL 372


>gi|114778881|ref|ZP_01453678.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1]
 gi|114550850|gb|EAU53416.1| DNA polymerase III subunit beta [Mariprofundus ferrooxydans PV-1]
          Length = 366

 Score =  331 bits (850), Expect = 9e-89,   Method: Composition-based stats.
 Identities = 125/385 (32%), Positives = 204/385 (52%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+ R+ +L+L+     I+E+++TIP+  +VL++AN   + + A+  E+ I   I  S
Sbjct: 1   MKITLSRTPLLQLVQRCQSIVEKRHTIPILANVLIEANQDGITMTATDLEVGIRSHIDGS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVSA  L++I+R+L     +S    N     ++I  G S F + + P  E+P+
Sbjct: 61  VEEDGTATVSAKKLFEIIRELDAEMDVSLTTGNGF---ISIVSGSSRFRVNTRPADEYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E+E      L  + L +++  T FAM+T+E R YL G  F + ++   L  V TDGHR
Sbjct: 118 MAEQEGTIKIVLPGNALADMIAATSFAMSTDETRKYLTGTLFEL-DDSQNLRLVTTDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA++E+ +  Q A   S IVP+KAV EI ++       V++ +SE +I L   S +++ +
Sbjct: 177 LALSEIRL-QQAAGTASCIVPKKAVIEIRKLCEENQGQVELLISERQIRLVAGSNTLTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  FP YQ+VIP +N    R+  T   Q + R  I+++     ++L  S   L ++  
Sbjct: 236 LIDARFPVYQDVIPVNNPNIARIERTAFDQILRRNMIVANEFTHDIRLIFSDQGLDISAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  ++ E +   Y    + I FN +YL + +  I +       V   L    S V IR
Sbjct: 296 NSEQEESEEHLAAEYPGHEVAIGFNGRYLRDALGAIRAPS-----VCMELKDELSPVLIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G+D +          + YV+MPMRI
Sbjct: 351 GEDDEQ---------SRYVIMPMRI 366


>gi|319945019|ref|ZP_08019281.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis
           ATCC 51599]
 gi|319741589|gb|EFV94014.1| DNA-directed DNA polymerase III beta subunit [Lautropia mirabilis
           ATCC 51599]
          Length = 384

 Score =  331 bits (850), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 117/405 (28%), Positives = 196/405 (48%), Gaps = 41/405 (10%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+I    R  +L+ L     IIE+++T P+  +VL++     +    +  EI++      
Sbjct: 1   MQIIHAPRDAVLKPLQTVAGIIEKRHTQPILANVLIRQQGEAVTFTGTDMEIQVRTQASI 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                  + TVSA  L DI+R L D    +       G ++N+    S F LQ+ P  +F
Sbjct: 61  GAGSGTTATTVSAKKLIDILRALPD----TDVTIELNGNKLNLKTTRSRFALQTLPSEDF 116

Query: 119 PSTKEEEYVYS------------------FELASSVLKNLVERTHFAMATEEIRYYLNGI 160
           P  K      +                    L+   L++L++  HFAMA ++IR+YLNG+
Sbjct: 117 PVMKAGATDQAGPGSGSAGDGSTADLRADVTLSQKKLRHLLQMVHFAMAQQDIRFYLNGL 176

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
              ++   ++  AVAT+GHRLA    D+    A     I+PRK+V E+LR+L   D  V+
Sbjct: 177 LLVLSPAGMR--AVATEGHRLAF-CEDVEVHAAGQADAILPRKSVLELLRLLGDSDEPVR 233

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + +  +++ L    +    +L++G+FP+YQ VIP    K + +    L QA+ R SI+S+
Sbjct: 234 MEIIGTQVRLRFGDIEFISKLLEGKFPDYQRVIPKGYQKVIELERETLAQALQRASILSN 293

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            + + V+L L+  +L +   N +  +A E +++ Y   P+DI FN  YLL+++  + +  
Sbjct: 294 EKFRGVRLGLAPGRLGIQSSNTEQEEASEEIDIDYGGAPLDIGFNVSYLLDVLGTLKT-- 351

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D V      + SS  +     +S           YVLMPMRI
Sbjct: 352 ---DRVTMAFGDATSSALLTLPGDES---------FRYVLMPMRI 384


>gi|163854306|ref|YP_001628604.1| DNA polymerase III subunit beta [Bordetella petrii DSM 12804]
 gi|163258034|emb|CAP40333.1| DNA polymerase III, beta chain [Bordetella petrii]
          Length = 369

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 203/388 (52%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 1   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D  ++     N    ++++    S F LQ+   SEF
Sbjct: 61  GVGQDNESTTVAARKLLDILKALPDTGEVKLGLAN---NKLSVQSAKSRFALQTLAASEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  L    L++L+   HFAMA ++IRYYLNG+        ++  AVATD
Sbjct: 118 PTVAQPEKWDVSLSLPQRTLRHLLNMVHFAMAQQDIRYYLNGMLLVFEAGCVR--AVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA         I +   +IVPRK V E+ R+L   D  V V ++  +I      + +
Sbjct: 176 GHRLAH-CATAADGITERHEVIVPRKTVLEMQRLLEDSDEPVAVDVAPGQIRFRFGDVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRQFVVSREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y   P+D+ FN  YLL+++ N+ ++ +        +  +N+S 
Sbjct: 295 SSSNAEQEEAQEELDIDYGHEPLDVGFNVSYLLDVLANVKTENIQWS----VMPDANASA 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D D            YV+MPMRI
Sbjct: 351 LLTLPDDDQ---------FKYVVMPMRI 369


>gi|33591699|ref|NP_879343.1| DNA polymerase III subunit beta [Bordetella pertussis Tohama I]
 gi|33571342|emb|CAE44819.1| DNA polymerase iii, beta chain [Bordetella pertussis Tohama I]
 gi|332381118|gb|AEE65965.1| DNA polymerase III subunit beta [Bordetella pertussis CS]
          Length = 369

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 1   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D  ++          ++++    S F LQ+   SEF
Sbjct: 61  GVGPENESTTVAARKLLDILKALPDTGEVKL---GLASNKLSVQSAKSRFALQTLAASEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  +   +L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 118 PTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 176 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+  ++ +
Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y+  P+D+ FN  YLL+++ NI ++ V        +  +N+S 
Sbjct: 295 SSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWS----VMPDANASA 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D +            YV+MPMRI
Sbjct: 351 LITLPDDEQ---------FKYVVMPMRI 369


>gi|124265195|ref|YP_001019199.1| DNA polymerase III subunit beta [Methylibium petroleiphilum PM1]
 gi|124257970|gb|ABM92964.1| DNA polymerase III, beta subunit [Methylibium petroleiphilum PM1]
          Length = 368

 Score =  331 bits (849), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 195/385 (50%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +   L  L     I+ER++T+PV  +VL++     +E   S  EI++        D
Sbjct: 4   LKSPQEKFLGALQAVAGIVERRHTLPVLANVLMRKTGNAIEFTTSDLEIQVRTQAEFDGD 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               S TV A  L DI+R L     ++         ++ ++ G S F LQ+ P  +FP  
Sbjct: 64  AGNFSTTVGARKLIDILRTLPADQNVTLSS---AQNKLTLTGGKSRFTLQTLPAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E  ++  +F +    LK L+ + HFAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAADFGPAFSVPQKSLKALIAQVHFAMAVHDIRYYLNGILFVAEGKSLTL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+A+  +  ++ K   +I+PRK V E+ R+L  +D+++++  + ++       +    +
Sbjct: 179 LALAQATLDVEMPKQE-VILPRKTVLELQRLLKDEDTAIEMRFAGNQAKFAFSGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+L+     L +   
Sbjct: 238 LVEGKFPDYNRVIPKNHKNHVTLGRAPLLASLQRAAILTSEKFKGVRLNFDPGTLRIASS 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    ++I FN  YL++++ N+       + V   L  SNSS  + 
Sbjct: 298 NAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLANMG-----QEMVTLSLQDSNSSALVT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++             YV+MPMRI
Sbjct: 353 VPEQ---------GGFKYVVMPMRI 368


>gi|157690800|ref|YP_001485262.1| DNA polymerase III subunit beta [Bacillus pumilus SAFR-032]
 gi|157679558|gb|ABV60702.1| DNA-directed DNA polymerase III beta subunit [Bacillus pumilus
           SAFR-032]
          Length = 421

 Score =  331 bits (848), Expect = 1e-88,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 192/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  + +  S  +I I   IP  
Sbjct: 44  MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPQR 103

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL         ++N L     I  G + F L  
Sbjct: 104 DGDLEVITIDRPGSIVLQARFFSEIVKKLPMATVEIEVEQNHLTI---IRSGSAEFNLNG 160

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++F++ + +LKNL+ +T FA++T E R  L G+ + +  E  +L 
Sbjct: 161 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKV--EKGELI 218

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ RIL      V + ++E+++    
Sbjct: 219 CTATDSHRLALRKAKLDIDEESSYNVVIPGKSLTELSRILDDGQDLVSIVITETQVLFKA 278

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS  
Sbjct: 279 QNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLSAD 338

Query: 292 SDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            ++ L ++ ++P++GK +E++         + I F+ KY+L+ +  +        E+   
Sbjct: 339 PEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGT-----EIHVS 393

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R  + DS            +++P+R
Sbjct: 394 FTGAMRPFLLRTPNDDSI---------LQLILPVR 419


>gi|182412775|ref|YP_001817841.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1]
 gi|177839989|gb|ACB74241.1| DNA polymerase III, beta subunit [Opitutus terrae PB90-1]
          Length = 374

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 107/395 (27%), Positives = 193/395 (48%), Gaps = 32/395 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R      L     ++  K T+P+  +VL++A    + +  +  ++ I   I A 
Sbjct: 1   MKFKINRDHFANGLAQVLNVVGSKATMPILSNVLIEAEKDQISLTTTNLDLGIRCKIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++T+    L  IVR+L +   +    +     +V ++ G SNF +    + EFP 
Sbjct: 61  VKETGAVTLPVKRLATIVRELPN---VDVTVDASPNHQVKLASGGSNFRIMGIGKEEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF L  S L ++++   +A +T+E RY LNG++F+    D KL  VATDG R
Sbjct: 118 LPEFGEEKSFTLEQSELTSMLKSVAYAQSTDETRYILNGVYFNFK--DGKLSLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232
           LA+   ++        +II+P K V E++R+L  K   +K++ ++ R    I        
Sbjct: 176 LALVSKELEVPADSAGAIILPAKTVSELMRLL-DKGEKLKINFNDRRAAFQIATDKDSSG 234

Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ES+ +  ++++G +PNYQ V+P    + +++      Q V R +++ S +  +VK+ L
Sbjct: 235 LVESVYLYSKVVEGNYPNYQQVVPKETHQRIKLERELFLQCVHRAALVCSEKSNSVKIKL 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           SS+ L +T  +PD G+A ESM + Y+   + + FN  ++++ +  +       DE+ F L
Sbjct: 295 SSNLLEITAQSPDFGEAHESMAIGYSGPELQVAFNPAFVMDPLRAL-----TKDEIFFEL 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               S    +  D           +   V+MP+R+
Sbjct: 350 KDDVSPGVFKTLD-----------SFLCVIMPVRL 373


>gi|33603962|ref|NP_891522.1| DNA polymerase III subunit beta [Bordetella bronchiseptica RB50]
 gi|33568938|emb|CAE35352.1| DNA polymerase iii, beta chain [Bordetella bronchiseptica RB50]
          Length = 371

 Score =  331 bits (848), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 3   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D  ++          ++++    S F LQ+   SEF
Sbjct: 63  GVGPENESTTVAARKLLDILKALPDTGEVKL---GLASNKLSVQSAKSRFALQTLAASEF 119

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  +   +L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 120 PTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 178 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+  ++ +
Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y+  P+D+ FN  YLL+++ NI ++ V        +  +N+S 
Sbjct: 297 SSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWS----VMPDANASA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D +            YV+MPMRI
Sbjct: 353 LITLPDDEQ---------FKYVVMPMRI 371


>gi|71905644|ref|YP_283231.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB]
 gi|71845265|gb|AAZ44761.1| DNA polymerase III, beta subunit [Dechloromonas aromatica RCB]
          Length = 368

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 119/385 (30%), Positives = 214/385 (55%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASV 61
           I  +R  +L  L     I+ER++T+P+  +VLL+     L + A+  EI+IT +   A  
Sbjct: 4   IKTQRDTLLAPLQSVSGIVERRHTLPILSNVLLEKKGDRLTLLATDIEIQITTSTECAGG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G++TV A  + +I+R L D +++S   E++    + +  G S F LQ+ P  +FP  
Sbjct: 64  EGDGAVTVGARKMQEILRSLPDTSEVSLVLEDK---RLQVRAGKSRFSLQTLPADDFPRM 120

Query: 122 KEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E     F ++    + L+ +T ++MA +++RYYLNG+   +  ++L+  AVATDGHR
Sbjct: 121 TMSEGETKQFSISQKAFRQLISKTQYSMAAQDVRYYLNGLLLLVEGKELR--AVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A V+I   + +   +I+PRK V E+ R+L   D  + ++L+ +++  +  S+ +  +
Sbjct: 179 LAYASVEIDTDLPRQE-MILPRKTVLELNRLLVDTDDLLNITLTPNQVRFSFGSVVLVSK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ V+P +    ++V    L QA+ R +I+++ + + V++ L  + L +   
Sbjct: 238 LIDGKFPDYERVVPATLKNHMKVGRQTLMQAMQRAAILTNEKFRGVRVVLGDNSLKLIAA 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A+E + V Y    +D+ FN  YLL++++NI +     DE+ +  + +NSS  I 
Sbjct: 298 NAEQEEAVEEIEVDYTGDVIDVGFNVGYLLDVLNNIHA-----DEIQWSFNDANSSALIT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
               D            YV+MPMRI
Sbjct: 353 LPGND---------RFKYVVMPMRI 368


>gi|169627110|ref|YP_001700759.1| DNA polymerase III subunit beta [Mycobacterium abscessus ATCC
           19977]
 gi|169239077|emb|CAM60105.1| DNA polymerase III, beta subunit (DnaN) [Mycobacterium abscessus]
          Length = 399

 Score =  330 bits (847), Expect = 2e-88,   Method: Composition-based stats.
 Identities = 101/398 (25%), Positives = 180/398 (45%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R D  + +    R +  + T+PV   VLL A+D  L +     E+     +PA V
Sbjct: 14  KFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGFDYEVSAQVKVPAEV 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G+  VS  LL DI R L +       +    GT + IS G + F L S P  ++P+ 
Sbjct: 74  AAAGNALVSGRLLSDITRSLPNKPVDVALE----GTRLLISCGSAKFSLPSMPVEDYPAL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + V    + +   A   ++    L GI   IN + + L   ATD  RL
Sbjct: 130 PSLPEE-TGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEINGDTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSL-------SESRIHLNIE 233
           AV E++  +   +   +++VP K + E  +  SS  S V+++L       SE  + +  +
Sbjct: 187 AVRELNWTSGSGETSAAVLVPAKTLSEAAKSASSG-SDVQLALGAGSAIGSEGLLGIVSD 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +  + L +A+ RV++++  R   ++L     
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPTEHTALATIAISELVEAIKRVALVA-DRGAQIRLEFEPG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + + ++ S+      V F   + 
Sbjct: 305 LLRLSAGADDVGRAEEELEVEFVGEPLTIAFNPTYLTDGLGSLHSN-----RVTFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
           +    +R  D D  + + +        +  Y+LMP+R+
Sbjct: 360 SRPAVLRPADDDQSSPEGSGPFTAAQTDYVYLLMPVRL 397



 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 29/191 (15%), Positives = 76/191 (39%), Gaps = 16/191 (8%)

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +  S    +    F +A     + V     ++ +      L G+    ++  L L     
Sbjct: 2   DLASPTAADTSLKFRVARDDFADSVAWVARSLPSRPTVPVLAGVLLTAHDTGLTLSGF-- 59

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D    A  +V + A++A   + +V  + + +I R L +K   V V+L  +R+ ++  S  
Sbjct: 60  DYEVSA--QVKVPAEVAAAGNALVSGRLLSDITRSLPNK--PVDVALEGTRLLISCGSAK 115

Query: 237 MSVR-LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSL 290
            S+  +   ++P     +P   ++   +      +A+ +V++ +           +++ +
Sbjct: 116 FSLPSMPVEDYPA----LPSLPEETGALGADVFSEAIGQVAVAAGKDDTLPMLTGIRVEI 171

Query: 291 SSDKLCMTVDN 301
           + D + +   +
Sbjct: 172 NGDTVVLAATD 182


>gi|317401671|gb|EFV82296.1| DNA polymerase subunit III [Achromobacter xylosoxidans C54]
          Length = 371

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 199/388 (51%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 3   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D   +          ++++    S F LQ+   SEF
Sbjct: 63  GVGHDNESTTVAARKLLDILKALPDTGDVRLAL---ASNKLSVQSAKSRFALQTLAASEF 119

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  +    L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 120 PTVAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    I++   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 178 GHRLAHCSTEADG-ISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   V    L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFLVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y   P+D+ FN  YLL+++ N+  D +        +  +N+S 
Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEPLDVGFNVGYLLDVLSNVKVDNIQWS----VMPDANASA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 353 LITLPEDDQ---------FKYVVMPMRI 371


>gi|311103226|ref|YP_003976079.1| DNA polymerase III subunit beta [Achromobacter xylosoxidans A8]
 gi|310757915|gb|ADP13364.1| DNA polymerase III, beta subunit [Achromobacter xylosoxidans A8]
          Length = 369

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 199/388 (51%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 1   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D   +          ++++    S F LQ+   SEF
Sbjct: 61  GVGQDNESTTVAARKLLDILKALPDTGDVRLAL---ASNKLSVQSAKSRFALQTLAASEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  +    L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 118 PTVAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    I++   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 176 GHRLAHCSTEADG-ISERHEVIVPRKTVLEMQRLLEDSDEPVSIDVAPGQIRFRFGDVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   VN   L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 235 VSKLVEGKFPDFTRVIPTNYTRHFLVNREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y    +D+ FN  YLL+++ N+  D +        +  +N+S 
Sbjct: 295 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDNIQWS----VMPDANASA 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 351 LITLPEDDQ---------FKYVVMPMRI 369


>gi|121607006|ref|YP_994813.1| DNA polymerase III subunit beta [Verminephrobacter eiseniae EF01-2]
 gi|121551646|gb|ABM55795.1| DNA polymerase III, beta subunit [Verminephrobacter eiseniae
           EF01-2]
          Length = 372

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 111/389 (28%), Positives = 188/389 (48%), Gaps = 26/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L  L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLAALQSVAGIVERRHTLPILANVLIRKTGNALQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
                 T+S   L DI+R +     +S   +    + + +  G S F L S P  +FP  
Sbjct: 64  TGECMTTMSVRKLIDILRTMPGEQTVSLESD---QSRLILKAGKSRFTLHSLPGQDFPLV 120

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +    LK+L+ +  F MA ++IRYYLNGI F    E   L  +ATDGHR
Sbjct: 121 QESAAFGPVFSVPQKTLKSLLGQVSFTMAVQDIRYYLNGILFV--AEGQTLSLIATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLS 236
           LA A   +  Q+ K   +I+PRK V E+ R+LS  D      +++  + ++       + 
Sbjct: 179 LAFACATLDVQVPKQE-VILPRKTVLELQRLLSDADGDNRPHIEMQFASNQAKFTFGGME 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              +L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + + V+L+L    L 
Sbjct: 238 FVTKLVEGKFPDYNRVIPKNHHNCVTLGRAALLTSLQRTAIMTSDKFKGVRLNLEPGALR 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +  +A++ ++V Y    ++I FN  YL++ + N+       D V       NSS
Sbjct: 298 VASSNAEQEEAVDELDVDYAGDNIEIGFNVTYLIDALANME-----QDMVQLAFADGNSS 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +     D         N  YV+MPMRI
Sbjct: 353 ALLTIPAND---------NFKYVVMPMRI 372


>gi|145221420|ref|YP_001132098.1| DNA polymerase III subunit beta [Mycobacterium gilvum PYR-GCK]
 gi|315441698|ref|YP_004074577.1| DNA polymerase III subunit beta [Mycobacterium sp. Spyr1]
 gi|145213906|gb|ABP43310.1| DNA polymerase III, beta subunit [Mycobacterium gilvum PYR-GCK]
 gi|315260001|gb|ADT96742.1| DNA polymerase III, beta subunit [Mycobacterium sp. Spyr1]
          Length = 398

 Score =  330 bits (846), Expect = 3e-88,   Method: Composition-based stats.
 Identities = 92/398 (23%), Positives = 173/398 (43%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R D  + +    R +  + T+PV   VLL  +D  L +     E+     IPA +
Sbjct: 13  KFRLTREDFADAVAWVARNLPSRPTVPVLAGVLLTGSDEGLTVSGFDYEVSAEVQIPAEI 72

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L         +    GT V+++ G + F L +    ++P+ 
Sbjct: 73  ASPGSVLVSGRLLSDIVRSLPAKPVDVSVE----GTRVSLTCGSARFSLPTMAVEDYPTL 128

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                      ++ +    + +   A   ++    L GI   I+ E  K+   ATD  RL
Sbjct: 129 PTLPDETGVV-SADLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 185

Query: 182 AVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+           +++VP K + E  +  +   + V ++L        E  + +  +
Sbjct: 186 AVRELTWSAGAAGVEAAVLVPAKTLAEAAKAGTDG-TEVHLALGQGPTVGKEGLLGIRSK 244

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++  + D
Sbjct: 245 GKRSTTRLLDAEFPKFRQLLPTEHTAIATIGVAELTEAIKRVALVA-DRGAQVRMEFADD 303

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V ++  P+ I FN  YL + + ++ +     + V F   + 
Sbjct: 304 VLRLSAGADDVGRAEEDLPVQFSGDPLTIAFNPSYLTDGLGSLHA-----ERVTFGFTTP 358

Query: 354 NSSVFIRGKDKD------SKNNKDNKVNAFYVLMPMRI 385
           +    +R    D      S      + +  Y+LMP+R+
Sbjct: 359 SRPAVLRPAGDDDGSAAGSGPYPAAQTDYVYLLMPVRL 396


>gi|295837756|ref|ZP_06824689.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74]
 gi|295826661|gb|EFG64969.1| DNA polymerase III, beta subunit [Streptomyces sp. SPB74]
          Length = 376

 Score =  329 bits (845), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 171/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ VS  LL DI R L +       + +  G    ++ G S F L + P  E+P+
Sbjct: 61  TEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVTCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +  ++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-SATGTVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     + +++ ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPEDSEISAVALVPAKTLLDTAKSLTSGD-NVTIALSGSGSGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374


>gi|318058970|ref|ZP_07977693.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actG]
 gi|318079378|ref|ZP_07986710.1| DNA polymerase III subunit beta [Streptomyces sp. SA3_actF]
          Length = 376

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 171/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ VS  LL DI R L +       + +  G    ++ G S F L + P  E+P+
Sbjct: 61  TEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVTCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +  ++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-SATGTVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     + A++ ++ +VP K + +  + L++ D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPEDAEISAVALVPAKTLLDTAKSLTNGD-NVTIALSGSGSGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374


>gi|33598883|ref|NP_886526.1| DNA polymerase III subunit beta [Bordetella parapertussis 12822]
 gi|33575013|emb|CAE39679.1| DNA polymerase iii, beta chain [Bordetella parapertussis]
          Length = 371

 Score =  329 bits (844), Expect = 4e-88,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 204/388 (52%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 3   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D  ++          ++++    S F LQ+   SEF
Sbjct: 63  GVGPENESTTVAARKLLDILKALPDTGEVKL---GLASNKLSVQSAKSRFALQTLAASEF 119

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  +   +L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 120 PTVAQPEQWDVSLSMPQRMLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 178 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVALDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  ++  V+   L+ ++ R +I+++ + + V+L L+  ++ +
Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRQFSVSREALQGSLQRAAILTTDKFKGVRLQLAQHQMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y+  P+D+ FN  YLL+++ NI ++ V        +  +N+S 
Sbjct: 297 SSSNAEQEEAQEEIDIDYSFEPLDVGFNVSYLLDVLSNIKAENVQWS----VMPDANASA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D +            YV+MPMRI
Sbjct: 353 LITLSDDEQ---------FKYVVMPMRI 371


>gi|188590797|ref|YP_001795397.1| DNA polymerase III subunit beta [Cupriavidus taiwanensis LMG 19424]
 gi|170937691|emb|CAP62675.1| DNA polymerase III, beta-subunit [Cupriavidus taiwanensis LMG
           19424]
          Length = 371

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 121/391 (30%), Positives = 207/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V +   + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGNDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   +  +  K+ AVATD
Sbjct: 117 PTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGK--KVMAVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V++  + A + S   +I+PRK + E+ R+L   D  V V L+ +++     +
Sbjct: 175 GHRLAYCGVELENEAAGVGSRQEVIIPRKTILELQRLLEDNDDPVTVQLAANQVKFTFAN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +  
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDTHM 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ +     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKT-----EQVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   D D         N  YV+MPMRI
Sbjct: 350 SSALITVPDDD---------NFKYVVMPMRI 371


>gi|325677519|ref|ZP_08157183.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC
           33707]
 gi|325551766|gb|EGD21464.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus equi ATCC
           33707]
          Length = 394

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 94/400 (23%), Positives = 173/400 (43%), Gaps = 28/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D  + +    R +  +  +PV   VLL A++  L +     E+     + A 
Sbjct: 6   MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI R L +            GT V I+ G + F L + P  ++P 
Sbjct: 66  VTTTGQVLVSGKLLADITRALPNKPVDVTVD----GTRVLIACGSAKFSLPTMPVEDYPQ 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  L   +    V +   A   ++    L GI   I   D+ L   ATD  R
Sbjct: 122 LPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVL--AATDRFR 178

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLN 231
           LAV +++ +        +++VP + + E  + L     S V+++L        E  + + 
Sbjct: 179 LAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLSPVELALGAGASVGTEGMLGIV 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +    + RL+D EFP ++ ++P  +     V    L  A+ RV++++  R   V+L  +
Sbjct: 239 ADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVA-ERGAQVRLEFN 297

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           S+ L ++    D G+A E++   +   P+ I FN  YL++ ++++ S     + V F   
Sbjct: 298 SEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTFGFT 352

Query: 352 SSNSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385
           + +    +R   ++     +       + +  Y+LMP+R+
Sbjct: 353 TPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392


>gi|254445280|ref|ZP_05058756.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium
           DG1235]
 gi|198259588|gb|EDY83896.1| DNA polymerase III, beta subunit [Verrucomicrobiae bacterium
           DG1235]
          Length = 380

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 193/399 (48%), Gaps = 34/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R      L     ++  K T+P+  +VL++A    + +  +  ++ I   I A+
Sbjct: 1   MKFKIHRDHFSNGLQQVLNVVGSKATMPILSNVLIEAEGDTISLTTTNLDLGICARIKAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++T+    L  IV++L +        E     +V I+ G SNF +      EFP+
Sbjct: 61  IEEEGAVTLPVKRLATIVKELPNSDV---KVEASPSNQVKIASGGSNFKIMGISREEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI----NEEDLKLCAVAT 176
             E     SF +    L  +++   +A +++E RY LNG+FF+          +L  VAT
Sbjct: 118 LPEFSDDRSFTIEQGTLAGMIKSVSYAQSSDETRYMLNGVFFNFLEPEEGASGRLSLVAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI---- 232
           DG RLA  + ++        S+I+P K V E++R+L  K  ++K++ ++ R+   I    
Sbjct: 178 DGRRLAKTDHEMEVGEGMSGSLILPAKTVSELVRLL-DKGENLKIAFNDRRVAFQIHTKD 236

Query: 233 ------ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
                   + +  ++++G +PNYQ VIP    + ++V      Q++ R +++++ +   V
Sbjct: 237 DSDGFVGDIHLVSKVVEGNYPNYQQVIPKETHQRIKVERELFLQSIHRAALVTTDKSNQV 296

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           K+ +S++ + ++  +PD G++ ES+ + Y+   + + FN ++L++ +  +       DE+
Sbjct: 297 KIQISNNLMELSASSPDFGESHESLAIDYSGPDLQVAFNPQFLMDPLKAL-----TKDEL 351

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            F L    S    +  +           +   V+MP+R+
Sbjct: 352 FFELKDEVSPGVFKTLE-----------SFLCVIMPVRL 379


>gi|118468117|ref|YP_884424.1| DNA polymerase III subunit beta [Mycobacterium smegmatis str. MC2
           155]
 gi|1706495|sp|P52851|DPO3B_MYCSM RecName: Full=DNA polymerase III subunit beta
 gi|1321894|emb|CAA63249.1| dnaN [Mycobacterium smegmatis]
 gi|118169404|gb|ABK70300.1| DNA polymerase III, beta subunit [Mycobacterium smegmatis str. MC2
           155]
          Length = 397

 Score =  329 bits (844), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 96/398 (24%), Positives = 173/398 (43%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R D  + +    R +  + TIPV   VLL   D  L I     E+     + A +
Sbjct: 12  KFRVVREDFADAVAWVARSLPTRPTIPVLAGVLLTGTDEGLTISGFDYEVSAEVKVSAEI 71

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DI + L         +    GT V+++ G + F L +    ++P+ 
Sbjct: 72  ASAGSVLVSGRLLSDITKALPAKPVEVSVE----GTRVSLTCGSARFSLPTLAVEDYPAL 127

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  +AS +    + +   A   ++    L GI   I+ E + L   ATD  RL
Sbjct: 128 PALPEE-TGVIASDLFAEAIGQVAVAAGRDDTLPMLTGIRVEISGESVVL--AATDRFRL 184

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+  V        +++VP K + E  +  +  +  V ++L        +  + +  E
Sbjct: 185 AVRELTWVTTAGDVEAAVLVPAKTLAEAAKAGTDGN-QVHLALGSGASVGKDGLLGIRSE 243

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   +++  S D
Sbjct: 244 GKRSTTRLLDAEFPKFRQLLPAEHTAVATIGVAELTEAIKRVALVA-DRGAQIRMEFSDD 302

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 303 TLKLSAGADDVGRAEEDLPVDFAGEPLTIAFNPTYLTDGLGSLHS-----ERVTFGFTTP 357

Query: 354 NSSVFIRGKDKDSKNN------KDNKVNAFYVLMPMRI 385
           +    +R   +D   N         K +  Y+LMP+R+
Sbjct: 358 SRPAVLRPAGEDDGANGGSGPFPAAKTDYVYLLMPVRL 395


>gi|312137516|ref|YP_004004852.1| DNA polymerase III beta subunit [Rhodococcus equi 103S]
 gi|311886855|emb|CBH46163.1| DNA polymerase III beta subunit [Rhodococcus equi 103S]
          Length = 394

 Score =  329 bits (843), Expect = 5e-88,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 173/400 (43%), Gaps = 28/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D  + +    R +  +  +PV   VLL A++  L +     E+     + A 
Sbjct: 6   MKFRVAREDFADSVAWVARSLPSRPPVPVLGGVLLGADEQGLTVSGFDYEVSAQVRVSAE 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI R L +            GT V I+ G + F L + P  ++P 
Sbjct: 66  VTTTGQVLVSGKLLADITRALPNKPVDVTVD----GTRVLIACGSAKFSLPTMPVEDYPQ 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  L   +    V +   A   ++    L GI   I   D+ L   ATD  R
Sbjct: 122 LPTLPQ-QTGSLPVDLFSEAVSQVAVAAGKDDTLPMLTGIRVEIEGTDVVL--AATDRFR 178

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLN 231
           LAV +++ +        +++VP + + E  + L     + V+++L        E  + + 
Sbjct: 179 LAVRKLEWMPTAGDVTAAVLVPARTLSESAKTLGGNTLAPVELALGAGASVGTEGMLGIV 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +    + RL+D EFP ++ ++P  +     V    L  A+ RV++++  R   V+L  +
Sbjct: 239 ADGRRTTTRLLDAEFPKFRQLLPAEHTAMATVTVAPLVDAIKRVALVA-ERGAQVRLEFN 297

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           S+ L ++    D G+A E++   +   P+ I FN  YL++ ++++ S     + V F   
Sbjct: 298 SEGLVLSAGGDDAGRAEEALEADFQGEPLVIAFNPGYLIDGLNSLHS-----ERVTFGFT 352

Query: 352 SSNSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385
           + +    +R   ++     +       + +  Y+LMP+R+
Sbjct: 353 TPSRPAVLRPAGEEELERGESGTFAAPESDYIYLLMPVRL 392


>gi|126432615|ref|YP_001068306.1| DNA polymerase III subunit beta [Mycobacterium sp. JLS]
 gi|126232415|gb|ABN95815.1| DNA polymerase III, beta subunit [Mycobacterium sp. JLS]
          Length = 398

 Score =  328 bits (842), Expect = 7e-88,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 27/397 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R D  + +    R +  + T+PV   VLL  +D  L I     E+     + A +
Sbjct: 14  KFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFDYEVSAEVRVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DI + L         +    GT V+++ G + F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDITKALPAKPVDVSVE----GTRVSLTCGSARFSLPTMAVEDYPAL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  + + +    + +   A   ++    L GI   I  E + L   ATD  RL
Sbjct: 130 PTLPDE-TGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+           +++VP K + E  +  +   + V ++L        E  + +  E
Sbjct: 187 AVRELTWSTSSPDVEAAVLVPAKTLAEAAKAGTDG-TDVHLALGAGSAVGKEGLLGIRSE 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++  + D
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVA-DRGAQVRMEFADD 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V ++  P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 VLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVTFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           +    +R    +            + +  Y+LMP+R+
Sbjct: 360 SRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396



 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 32/191 (16%), Positives = 74/191 (38%), Gaps = 16/191 (8%)

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +   T        F L      + V      + T      L G+    +++ L +     
Sbjct: 2   DVVPTTAGHTDLKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGF-- 59

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D    A  EV + A+IA   S++V  + + +I + L +K   V VS+  +R+ L   S  
Sbjct: 60  DYEVSA--EVRVAAEIASPGSVLVSGRLLSDITKALPAK--PVDVSVEGTRVSLTCGSAR 115

Query: 237 MSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSL 290
            S+  +   ++P     +P   D+   +      +A+ +V++ +           +++ +
Sbjct: 116 FSLPTMAVEDYPA----LPTLPDETGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEI 171

Query: 291 SSDKLCMTVDN 301
           + + + +   +
Sbjct: 172 TGESVVLAATD 182


>gi|254246826|ref|ZP_04940147.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184]
 gi|124871602|gb|EAY63318.1| DNA polymerase III, beta chain [Burkholderia cenocepacia PC184]
          Length = 395

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 100/366 (27%), Positives = 187/366 (51%), Gaps = 22/366 (6%)

Query: 22  ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYDIVRK 80
             ++T+P+  ++L+  N   +   ++  E++IT      V     + TV+A  L DI+R 
Sbjct: 50  NARHTLPILANLLITKNGPDVSFLSTDLELQITTRADFGVGGDQIATTVAARKLLDILRA 109

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKN 139
           + DG       +      + +  G S F LQ+    EFP+  + +++  +  +     + 
Sbjct: 110 MPDGQVTLSLADK----RLTVQSGKSRFALQTLAADEFPTVAQAKDFGATLTVPQKSFRQ 165

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+   HFAMA ++IRYYLNG+   ++ +  +L AVATDGHRLA + + +         +I
Sbjct: 166 LLGMVHFAMAQQDIRYYLNGMLLVVDGD--QLMAVATDGHRLAFSSMKLEGGTFGRQEVI 223

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           VPRK + E+ R+L   D +V + +++++       + +  +L++G+FP++Q VIP ++  
Sbjct: 224 VPRKTILELQRLLEDIDDTVTIDIAQTQAKFTFGQVELVSKLVEGKFPDFQRVIPKAHKN 283

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
              +    L++++ R +I++S + + V+  ++  +L +   N D  +A E + + Y    
Sbjct: 284 TFEIGREELQRSLQRAAILTSDKFKGVRCIIAPGQLKIMSTNADQEEAQEELEIAYQGDT 343

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           +DI FN  YLL+++ N+       D V   L  ++SS  I   + D            YV
Sbjct: 344 VDIGFNVTYLLDVLANLK-----VDTVQVSLGDASSSALITVPENDE---------FKYV 389

Query: 380 LMPMRI 385
           +MPMRI
Sbjct: 390 VMPMRI 395


>gi|56477035|ref|YP_158624.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1]
 gi|56313078|emb|CAI07723.1| DNA polymerase III (Beta chain) [Aromatoleum aromaticum EbN1]
          Length = 367

 Score =  328 bits (842), Expect = 8e-88,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 199/385 (51%), Gaps = 23/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +T  R  +L  L     I+E+++T+P+  +VL++ +   L + A+  EI+I       + 
Sbjct: 4   LTTTRDALLAPLQSVAGIVEKRHTLPILSNVLIEKHGDQLTLLATDIEIQIRTTTAGHIG 63

Query: 63  -VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               SITV+A  L DI+R + +G       +      + +  G S F LQ+ P +++P  
Sbjct: 64  GEDASITVAARKLQDILRAVPEGDVTVMLDDK----RLTVKAGRSRFALQTLPAADYPRM 119

Query: 122 KEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +   + F ++    K  + +  +AMA ++IRYYLNG+    +  +L++  VATDGHR
Sbjct: 120 NPPDGDATHFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRM--VATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   +   +     +I+PRK V E+ R L+  +  ++V L+ +++      + +  +
Sbjct: 178 LAFASNPLAGDVPHTE-VILPRKTVMELARQLADSEDPLEVILAGNQVVFRFGPIELVSK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FP+Y+ VIP ++ K L      L   + RV+I+++ + + V+L L    L +   
Sbjct: 237 LIDGKFPDYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKIVST 296

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A+E + V Y++ P+DI FN  YLL++++N     V  D + +R +  NSS  + 
Sbjct: 297 NAEQEEALEELEVDYHDDPLDIGFNVTYLLDVLNN-----VTSDTIEWRFNDGNSSALVT 351

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                            YV+MPMRI
Sbjct: 352 LP---------GNATFKYVVMPMRI 367



 Score = 38.7 bits (89), Expect = 1.7,   Method: Composition-based stats.
 Identities = 35/243 (14%), Positives = 78/243 (32%), Gaps = 19/243 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             +V +      L      + +++       +LL A+   L + A+        + P + 
Sbjct: 128 HFSVSQKSFKRQLAQVAYAMAQQDIRYYLNGLLLIASGSELRMVATDGHRLAFASNPLAG 187

Query: 62  DVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           DV    + +    + ++ R+L D            G +V    G     +    + +FP 
Sbjct: 188 DVPHTEVILPRKTVMELARQLADSEDPLEVI--LAGNQVVFRFGPIEL-VSKLIDGKFP- 243

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN-----GIFFHINEEDLKLCAVA 175
                  Y   +  +  K L       +AT      L      G+   + +  LK+  V+
Sbjct: 244 ------DYERVIPQNHPKLLTFERMPLLATLSRVAILTNEKFRGVRLVLGDGSLKI--VS 295

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ES 234
           T+  +    E   V        I      + ++L  ++S     + +   S   + +  +
Sbjct: 296 TNAEQEEALEELEVDYHDDPLDIGFNVTYLLDVLNNVTSDTIEWRFNDGNSSALVTLPGN 355

Query: 235 LSM 237
            + 
Sbjct: 356 ATF 358


>gi|87301552|ref|ZP_01084392.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701]
 gi|87283769|gb|EAQ75723.1| DNA polymerase III subunit beta [Synechococcus sp. WH 5701]
          Length = 380

 Score =  328 bits (841), Expect = 9e-88,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 184/395 (46%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++P
Sbjct: 1   MKLVCSQAELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ + L  +IV +L   + IS   E E   +V I+    ++ ++     +F
Sbjct: 61  ASVESSGTITLPSRLFGEIVARLSSDSPISLSCE-EGQEQVEITSRSGSYQMRGLSAEDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +      L    L   +  T FA + +E +  L G+   + ++DL+    ATDG
Sbjct: 120 PDLPLVQTGTPLRLQPDALVKGLRATLFASSGDEAKQLLTGVHLGLADQDLE--CAATDG 177

Query: 179 HRLAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNI 232
           HRL+V  ++         ++  ++ VP +++ E+ R+LS  S D  V +     ++    
Sbjct: 178 HRLSVLRLEKAFSGAEDGSEPFAVTVPARSLRELERLLSACSSDDPVSLYCDRGQVVFLW 237

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
               ++ R +DG +PNY+ +IP    + L ++     QA++RV++++      VKLS   
Sbjct: 238 ADQVLTSRSLDGTYPNYRQLIPDRFSRTLELDRRGFVQALERVAVLADQHNNVVKLSSDP 297

Query: 293 --DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              +L ++ D  D+G   E +    +  P++I FN +Y+L+ +  +       + V  R 
Sbjct: 298 ASGQLHISADAQDVGSGSEDLPAVISGDPIEIAFNVRYMLDGLKAM-----TPERVELRC 352

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  +   +      +           Y++MP++I
Sbjct: 353 NAPTTPAVLTSAQDPT---------FTYLVMPVQI 378


>gi|94308947|ref|YP_582157.1| DNA polymerase III subunit beta [Cupriavidus metallidurans CH34]
 gi|93352799|gb|ABF06888.1| DNA polymerase III, beta subunit [Cupriavidus metallidurans CH34]
          Length = 371

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 206/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGSDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   ++ +  K+ AVATD
Sbjct: 117 PTVAEAAEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVDGK--KVMAVATD 174

Query: 178 GHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V++  +   +     +I+PRK + E+ R+L   D  V+V L+ +++     +
Sbjct: 175 GHRLAYCGVELENEATGVGSRQEVIIPRKTILELQRLLEDTDDPVQVQLAANQVKFTFAN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +  
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVQLQQALQRTAILTTDKFKGVRCILDTHV 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ S     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   + D         N  YV+MPMRI
Sbjct: 350 SSALITVPEDD---------NFKYVVMPMRI 371


>gi|301631933|ref|XP_002945046.1| PREDICTED: DNA polymerase III subunit beta-like [Xenopus (Silurana)
           tropicalis]
          Length = 554

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 198/385 (51%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  ++L++     L+   S  EI+I        D
Sbjct: 190 LKATQDKVLAVLQSVSGIVERRHTLPILANMLIRKTGNALQFTTSDQEIQIRTTAELGGD 249

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           V   + TV    L DI++ +     +S        +++ +  G S F LQ+    +FP  
Sbjct: 250 VGDFATTVGVRKLIDILKTMPAEQMVSLES---SQSKLILKGGKSRFTLQTLAAEDFPLV 306

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +   VLK L+ +  FAMA ++IRY+LNGI F    + L L  VATDGHR
Sbjct: 307 QESPAFGPVFSVPQKVLKGLLNQVSFAMAVQDIRYFLNGILFVAEGKTLSL--VATDGHR 364

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  ++  ++ K   +I+PRK V E+ R+LS  D ++++  + ++       +    +
Sbjct: 365 LAFASSELDVEVPKQ-GVILPRKTVLELQRLLSDADGAIEMQFANNQAKFCFGGMEFVTK 423

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L  ++ R +IM+S + +AV+L++    L +   
Sbjct: 424 LVEGKFPDYHRVIPNNHHNSITLGRAPLLTSLQRTAIMTSEKFKAVRLNIEPGTLRVAST 483

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A++ +++ Y    +++ FN  YLL+++ N+       + V   L  +NSS  + 
Sbjct: 484 NAEQEEAVDELDIDYGGNSIEVVFNVTYLLDVLANMG-----QEMVKIDLADNNSSALVT 538

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             + DS           YV+MPMRI
Sbjct: 539 IPENDS---------FKYVVMPMRI 554


>gi|118578451|ref|YP_899701.1| DNA polymerase III subunit beta [Pelobacter propionicus DSM 2379]
 gi|118501161|gb|ABK97643.1| DNA polymerase III, beta subunit [Pelobacter propionicus DSM 2379]
          Length = 373

 Score =  328 bits (841), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 113/390 (28%), Positives = 204/390 (52%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +++   L+ L     I+E++ ++P+  +VLL+A +  L + A+  E+ +    PA 
Sbjct: 1   MEFRIDKEVFLKSLQKIQGIVEKRTSMPILSNVLLEATESSLRVTATDLEVGMKCIYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G ITV A  +Y+IV++L +       K+N+    V I  G  +F +      EFP 
Sbjct: 61  ILSPGRITVGAKKIYEIVKELPNQQISFSAKDND---WVEIRCGKVHFNIVGLSAEEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF--FHINEEDLKL-CAVATD 177
             E      FE+ S++LK ++E+T +A+  ++ +Y LNG+F    IN++D++L   VATD
Sbjct: 118 FPEVHEENLFEIESALLKGMIEKTSYAICNDDTKYNLNGLFAKTEINDDDVQLLKMVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           GHRL++A         +  S  +I+P+K V E+ +I      ++     ++   +     
Sbjct: 178 GHRLSIASCPFKGNAGQELSKGVILPKKGVYELKKIAEEDGGTLMFGFMDNSAVIKRGDS 237

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M +RL+DGEFP+Y  VIP SND+ + +NC +   +V R++I+SS + + + L +S   +
Sbjct: 238 YMVMRLVDGEFPDYNRVIPTSNDRSIIINCDDFTHSVRRMAILSSEKFKGIMLDISESSI 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  NP++G A+E ++V Y   P  + FN +YLL+++    +     + V  +     +
Sbjct: 298 RISSSNPELGDAMEEIDVSYGGEPFSVRFNARYLLDVLAVTET-----ESVEMKFKDELA 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I     DS            V+MPMR+
Sbjct: 353 PSIILPDKSDS---------FLAVIMPMRL 373


>gi|113866033|ref|YP_724522.1| DNA polymerase III subunit beta [Ralstonia eutropha H16]
 gi|113524809|emb|CAJ91154.1| DNA polymerase III beta subunit [Ralstonia eutropha H16]
          Length = 371

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 119/391 (30%), Positives = 205/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L  L     I+ER++T+P+  ++L++ +   +   ++  EI+IT     
Sbjct: 1   MQLVKTSRDNLLRPLQIVSGIVERRHTLPILANLLIRKSGSNVSFLSTDIEIQITTHAEC 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R + DG       +      + +  G S F LQ+    EF
Sbjct: 61  GVGSDSVATTVAARKLLDILRAMPDGDVALSLNDK----RMTVQSGKSRFALQTLAAEEF 116

Query: 119 PSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E  E+  S  L     K+L+   HFAMA ++IRYYLNG+   +  +  K+ AVATD
Sbjct: 117 PTVAEASEFNASVSLPQKTFKHLLAMVHFAMAQQDIRYYLNGMLLVVEGK--KVMAVATD 174

Query: 178 GHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA   V++  +   +     +I+PRK + E+ R+L   D  V+V L+ +++     +
Sbjct: 175 GHRLAYCGVELETEAVGVGARQEVIIPRKTILELQRLLEDNDDPVQVQLAANQVKFTFAN 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP        ++   L+QA+ R +I+++ + + V+  L +  
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGYKNAFAIDRVRLQQALQRTAILTTDKFKGVRCILDTHM 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  N D  +A E + + Y+   +DI FN  YLL+++ N+ S     ++V   L  SN
Sbjct: 295 LKISSTNADQEEAQEELELDYSGDALDIGFNVTYLLDVLANLKS-----EQVQVSLGDSN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I   + D         N  YV+MPMRI
Sbjct: 350 SSALITVPEDD---------NFKYVVMPMRI 371


>gi|161831398|ref|YP_001595902.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331]
 gi|161763265|gb|ABX78907.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 331]
          Length = 369

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           MK+ + R  +L+ L     ++ERK T+P+  +VLL      L I  +  E+E+     + 
Sbjct: 1   MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +      +T+    L DI R L D A I  +++ E   ++ +  G S F L + P  +F
Sbjct: 61  KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E      L  S  ++L+ RTHFAMA +++RYYLNG+         KL A+ATDG
Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +         II+PRK + E+LR+L   ++   + +  + I ++    + +
Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALAAIRIGNNHIGVSTNDFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FP+ + VIP   DK+  ++   L+QA+ R +I+ + + + V+  L    L + 
Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+   A E +N+ Y    +DI FN  Y+L+I++ ++S       +     +++SSV 
Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNS-----GNIRLTFSTADSSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +  S        ++ +V+MPMR+
Sbjct: 351 INEVENPS--------DSAFVVMPMRL 369


>gi|29653366|ref|NP_819058.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493]
 gi|153209960|ref|ZP_01947547.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165924212|ref|ZP_02220044.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334]
 gi|212211671|ref|YP_002302607.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212]
 gi|212217690|ref|YP_002304477.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154]
 gi|29540628|gb|AAO89572.1| DNA polymerase III, beta chain [Coxiella burnetii RSA 493]
 gi|120575206|gb|EAX31830.1| DNA polymerase III, beta subunit [Coxiella burnetii 'MSU Goat
           Q177']
 gi|165916346|gb|EDR34950.1| DNA polymerase III, beta subunit [Coxiella burnetii RSA 334]
 gi|212010081|gb|ACJ17462.1| DNA polymerase III, beta chain [Coxiella burnetii CbuG_Q212]
 gi|212011952|gb|ACJ19332.1| DNA polymerase III, beta chain [Coxiella burnetii CbuK_Q154]
          Length = 369

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 199/387 (51%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           MK+ + R  +L+ L     ++ERK T+P+  +VLL      L I  +  E+E+     + 
Sbjct: 1   MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +      +T+    L DI R L D A I  +++ E   ++ +  G S F L + P  +F
Sbjct: 61  KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E      L  S  ++L+ RTHFAMA +++RYYLNG+         KL A+ATDG
Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +         II+PRK + E+LR+L   ++   + +  + I ++    + +
Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FP+ + VIP   DK+  ++   L+QA+ R +I+ + + + V+  L    L + 
Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVRFELRQGLLRIL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+   A E +N+ Y    +DI FN  Y+L+I++ ++S       +     +++SSV 
Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNS-----GNIRLTFSTADSSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +  S        ++ +V+MPMR+
Sbjct: 351 INEVENPS--------DSAFVVMPMRL 369


>gi|332524902|ref|ZP_08401088.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2]
 gi|332108197|gb|EGJ09421.1| DNA polymerase III subunit beta [Rubrivivax benzoatilyticus JA2]
          Length = 369

 Score =  327 bits (840), Expect = 1e-87,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 197/385 (51%), Gaps = 21/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +LE L     I+ER++T+P+  +VLL+ N  ++E+  S  EI++  +     D
Sbjct: 4   LKAAQEKLLEALQSVAGIVERRHTLPILANVLLRKNGPVVELTTSDLEIQVRTSAELGGD 63

Query: 63  VC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI+R L     ++         ++ ++ G S F LQS P  +FP  
Sbjct: 64  EGHFATTVGARKLIDILRALPAEQTVTLSS---AQNKLTLAGGKSRFTLQSLPADDFPLV 120

Query: 122 KE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            E  ++  +F +    L+ L+ + HF+MA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 NEAVDFGPTFSVPQKTLRQLINQVHFSMAVHDIRYYLNGILFIAEGKTLTL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+A+  +   +     +I+PRK V E+ R+L  +++ +++  + ++       L    +
Sbjct: 179 LALAQGTLETDVPNRQEVILPRKTVLELQRLLKDEETPIEMRFAGNQAKFAFSGLEFVTK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   L V    L  ++ R +I++S + + V+L+L    L +   
Sbjct: 239 LVEGKFPDYNRVIPRNHKNALVVGRAALLGSLQRAAILTSEKFKGVRLNLEPGVLRIASS 298

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    ++I FN  YL++++ N+       + V   L  +N+S    
Sbjct: 299 NAEQEEAKEELEIDYAGDTIEIGFNVTYLIDVLANMQ-----QEMVKIELQDTNASALFT 353

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++             YV+MPMRI
Sbjct: 354 VPEQ---------TGFKYVVMPMRI 369


>gi|194016230|ref|ZP_03054844.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061]
 gi|194011703|gb|EDW21271.1| DNA polymerase III, beta subunit [Bacillus pumilus ATCC 7061]
          Length = 378

 Score =  327 bits (839), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 191/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  + +  S  +I I   I   
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFISQR 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL      +   E E     NI  G + F L  
Sbjct: 61  DGDLEVITIDRPGSIVLQARFFSEIVKKLP---MTTVEIEVEQNHLTNIRSGSAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++F++ + +LKNL+ +T FA++T E R  L G+ + +  E  +L 
Sbjct: 118 LDAEEYPHLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWRV--EKGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ RIL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIDEGSSYNVVIPGKSLTELSRILDDGQDLVSIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+   +IP  +  ++ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 QNVLFFSRLLDGNYPDTARLIPQESKTDVVVNTKEFLQAIDRASLLAREGRNNVVKLSAD 295

Query: 292 SDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            ++ L ++ ++P++GK +E++         + I F+ KY+L+ +  +        E+   
Sbjct: 296 PEQSLEISSNSPEIGKVVETVQADDIKGEDLKISFSPKYMLDALKVLEGT-----EIHVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R  + DS            +++P+R
Sbjct: 351 FTGAMRPFLLRTPNDDSI---------LQLILPVR 376


>gi|313902783|ref|ZP_07836180.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM
           13965]
 gi|313466903|gb|EFR62420.1| DNA polymerase III, beta subunit [Thermaerobacter subterraneus DSM
           13965]
          Length = 370

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 192/389 (49%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+++SD+   L  A R +  + T+     +LL A    L + A+  E+ +    PA 
Sbjct: 1   MRLTIDQSDLHAALQVASRAVATRTTLAALSGILLVAEPEQLRLVATDLEMTVEALAPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +    L ++VR+L  G       E + G    +    S F L     + FP+
Sbjct: 61  VQEEGSVILPGRHLAELVRRLPPGEV---QLEVDPGHRARLLQHRSRFTLHGMDPAAFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +    ++V+++++ RT  A++T+E R  L G+ F +  +  +L A+ATDG R
Sbjct: 118 LPRVGAGSTVLFDNAVMRHVLRRTTMAVSTDESRPILTGVSFRVEGD--RLEALATDGFR 175

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A + V +   +   P   ++P +++ E+ R+L   +   ++ L +++    +  + +  
Sbjct: 176 IAASRVTLERPVEGQPVDAVIPGRSLAEVARLLPD-EGIGRLILDDTQAGFQLGEVRLIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296
           RL++G +P   +++P      ++V     ++A +R +++S  R  A   ++L++   +L 
Sbjct: 235 RLLEGTYPRVLDLVPSQYPTRVQVPTRAFQEACERAALLSDTRQAARWLIRLTVEPGRLV 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  +P++G+A E +    +   M I FN +YL++ +  I S     DEV+F L     +
Sbjct: 295 VTASDPELGEAREEVPAQVDGEGMTIGFNARYLVDGLKAIDS-----DEVLFELTDPLKA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +RG   D         + FY+++P++I
Sbjct: 350 SRLRGVASD---------DFFYIVLPVKI 369


>gi|302559665|ref|ZP_07312007.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000]
 gi|302477283|gb|EFL40376.1| DNA polymerase III, beta subunit [Streptomyces griseoflavus Tu4000]
          Length = 376

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 165/390 (42%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  TEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  + V++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235
            AV E     +   + ++ +VP K + +  + L+S D  +         E  I       
Sbjct: 174 FAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     L
Sbjct: 234 RTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + D  +A+E ++       + I FN  +LL+ +  I S             +S  
Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + G+      + +      Y++MP+R+
Sbjct: 348 PALLSGR---PAVDAEADDAYKYLIMPVRL 374


>gi|108796983|ref|YP_637180.1| DNA polymerase III subunit beta [Mycobacterium sp. MCS]
 gi|119866067|ref|YP_936019.1| DNA polymerase III subunit beta [Mycobacterium sp. KMS]
 gi|108767402|gb|ABG06124.1| DNA polymerase III, beta subunit [Mycobacterium sp. MCS]
 gi|119692156|gb|ABL89229.1| DNA polymerase III, beta subunit [Mycobacterium sp. KMS]
          Length = 398

 Score =  327 bits (838), Expect = 2e-87,   Method: Composition-based stats.
 Identities = 89/397 (22%), Positives = 170/397 (42%), Gaps = 27/397 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R D  + +    R +  + T+PV   VLL  +D  L I     E+     + A +
Sbjct: 14  KFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTISGFDYEVSAEVRVVAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DI + L         +    GT V+++ G + F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDITKALPAKPVDVSVE----GTRVSLTCGSARFSLPTMAVEDYPAL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  + + +    + +   A   ++    L GI   I  E + L   ATD  RL
Sbjct: 130 PTLPDE-TGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVEITGESVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+           +++VP K + E  +  +   + V ++L        E  + +  E
Sbjct: 187 AVRELTWSTSSPDVEAAVLVPAKTLAEAAKAGTDG-TDVHLALGAGSAVGKEGLLGIRSE 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +    L +A+ RV++++  R   V++  + D
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPSEHTAVATIGVAELTEAIKRVALVA-DRGAQVRMEFADD 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V ++  P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 VLRLSAGADDVGRAEEDLAVAFSGEPLTIAFNPTYLTDGLGSLHS-----ERVTFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
           +    +R    +            + +  Y+LMP+R+
Sbjct: 360 SRPAVLRPAGDEDTGGGAGPFPALQTDYVYLLMPVRL 396



 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 34/192 (17%), Positives = 76/192 (39%), Gaps = 18/192 (9%)

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +   T        F L      + V      + T      L G+    +++ L +     
Sbjct: 2   DVVPTTAGHTDLKFRLVREDFADAVAWVARNLPTRPTVPVLAGVLLTGDDDGLTIS---- 57

Query: 177 DGHRLAV-AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
            G    V AEV +VA+IA   S++V  + + +I + L +K   V VS+  +R+ L   S 
Sbjct: 58  -GFDYEVSAEVRVVAEIASPGSVLVSGRLLSDITKALPAK--PVDVSVEGTRVSLTCGSA 114

Query: 236 SMSVRLID-GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLS 289
             S+  +   ++P     +P   D+   +      +A+ +V++ +           +++ 
Sbjct: 115 RFSLPTMAVEDYPA----LPTLPDETGVIGADLFAEAIGQVAVAAGRDDTLPMLTGIRVE 170

Query: 290 LSSDKLCMTVDN 301
           ++ + + +   +
Sbjct: 171 ITGESVVLAATD 182


>gi|187479880|ref|YP_787905.1| DNA polymerase III subunit beta [Bordetella avium 197N]
 gi|115424467|emb|CAJ51021.1| DNA polymerase III, beta chain [Bordetella avium 197N]
          Length = 371

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 198/388 (51%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 3   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D   +          ++++    S F LQ+   SEF
Sbjct: 63  GVGADNESTTVAARKLLDILKALPDTGDVKLAL---ASNKLSVQSAKSRFALQTLAASEF 119

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  L    L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 120 PTVAQPEQWDVSLTLPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 178 GHRLAHCATEADG-IAERHEVIVPRKTVLEMQRLLEDSDEPVSLDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   V+   L+ ++ R +I+++ + + V+L L  + + +
Sbjct: 237 VSKLVEGKFPDFSRVIPTNYTRHFLVSREALQGSLQRAAILTTDKFKGVRLQLGHNVMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y+   +D+ FN  YLL+++ N+  + V        +  +N+S 
Sbjct: 297 SSSNAEQEEAQEEIDIDYSHEALDVGFNVGYLLDVLANVKVENVEWS----VMPDANASA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D D            YV+MPMRI
Sbjct: 353 LITLPDDDQ---------FKYVVMPMRI 371


>gi|52078493|ref|YP_077284.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580]
 gi|52783857|ref|YP_089686.1| DNA polymerase III subunit beta [Bacillus licheniformis ATCC 14580]
 gi|319648519|ref|ZP_08002735.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2]
 gi|52001704|gb|AAU21646.1| DNA polymerase III (beta subunit) [Bacillus licheniformis ATCC
           14580]
 gi|52346359|gb|AAU38993.1| DnaN [Bacillus licheniformis ATCC 14580]
 gi|317389598|gb|EFV70409.1| DNA polymerase III subunit beta [Bacillus sp. BT1B_CT2]
          Length = 378

 Score =  326 bits (837), Expect = 3e-87,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 194/395 (49%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  + +  S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  DGDLEIVTIEQPGSIVLQARFFSEIVKKLPMSTV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              SE+P   + E  ++F++ + +LKNL+ +T FA++T E R  L G+ +++   +  L 
Sbjct: 118 LDASEYPLLPQIEEHHAFQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWNVTGGE--LI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDINEDSSYNVVIPGKSLTELSKILDDHQELVDIVITETQVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+   +IP  +   L VN     QA+DR S+++   R   VKLS +
Sbjct: 236 KNVLFFSRLLDGNYPDTNRLIPQESKTNLIVNTKEFLQAIDRASLLAREGRNNVVKLSAA 295

Query: 292 SDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +++ + ++ ++P++GK +E++N        + I F+ KY+L+ +  +       +++   
Sbjct: 296 ANESIEISSNSPEIGKVVETVNAEQIEGEDLKISFSPKYMLDALKVLEG-----EDIHVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + DS            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDDSIVQ---------LILPVR 376


>gi|213622043|ref|ZP_03374826.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 300

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 104/306 (33%), Positives = 175/306 (57%), Gaps = 7/306 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T 
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILSNEKFRGVRLYVSENQLKITA 294

Query: 300 DNPDMG 305
           +NP+  
Sbjct: 295 NNPEQE 300


>gi|21222286|ref|NP_628065.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)]
 gi|256786614|ref|ZP_05525045.1| DNA polymerase III subunit beta [Streptomyces lividans TK24]
 gi|289770507|ref|ZP_06529885.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
 gi|118804|sp|P27903|DPO3B_STRCO RecName: Full=DNA polymerase III subunit beta
 gi|153241|gb|AAA26735.1| DnaN [Streptomyces coelicolor A3(2)]
 gi|8247660|emb|CAB92998.1| DNA polymerase III, beta chain [Streptomyces coelicolor A3(2)]
 gi|289700706|gb|EFD68135.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
          Length = 376

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 166/390 (42%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  IEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  + V++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPEA-TGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDSVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235
            AV E     +   + ++ +VP K + +  + L+S D  +         E  I       
Sbjct: 174 FAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALSGSGAGEGLIGFEGAGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     L
Sbjct: 234 RTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + D  +A+E ++       + I FN  +LL+ +  I S             +S  
Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + G+      + +      Y++MP+R+
Sbjct: 348 PALLSGR---PAVDAEADEAYKYLIMPVRL 374


>gi|225163912|ref|ZP_03726204.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
 gi|224801489|gb|EEG19793.1| DNA-directed DNA polymerase [Opitutaceae bacterium TAV2]
          Length = 374

 Score =  326 bits (836), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 105/395 (26%), Positives = 191/395 (48%), Gaps = 32/395 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R      L     ++  K T+P+  +VL++A    + +  +  ++ I   I A 
Sbjct: 1   MKFKINRDHFSNGLAQVLNVVGSKATMPILSNVLIEAEKDYISLTTTNLDLGIRCKIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+    L  IVR+L     +    +     +V ++ G S F +    + EFP 
Sbjct: 61  VKEPGSVTLPVKRLATIVRELPS---VDVAFDGAANHQVKLTSGGSTFKIMGIGKDEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF L+   L  +++   +A +T+E RY LNG++F+    D KL  VATDG R
Sbjct: 118 LPEFGDDRSFNLSQEELTTMLKSVSYAQSTDETRYILNGVYFNFR--DAKLTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232
           LA+   ++        +II+P K VGE+LR+L  K + +K++ ++ R    I        
Sbjct: 176 LALTSKEMEIPEESAGAIILPAKTVGELLRML-GKGAKIKIAFNDRRASFEISTEGEDTG 234

Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             +S+ +  ++++G +PNYQ VIP    + +++      + V R +++ S +   V++ L
Sbjct: 235 LVDSIYLYSKVVEGNYPNYQQVIPKETHQRIKLERELFAECVHRAALVCSDKSNQVRIKL 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S++ L +T  +PD G+A ESM + Y+   + + FN  ++++ +  +       DEV F L
Sbjct: 295 STNLLEITAQSPDFGEAHESMAIAYSGPDLQVAFNPAFVMDPLKAL-----TKDEVFFEL 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               S    +  +           +   V+MP+R+
Sbjct: 350 KDEVSPGVFKTLE-----------SFICVIMPVRL 373


>gi|42521652|ref|NP_967032.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100]
 gi|39574182|emb|CAE77686.1| DNA polymerase III, beta subunit [Bdellovibrio bacteriovorus HD100]
          Length = 368

 Score =  326 bits (835), Expect = 4e-87,   Method: Composition-based stats.
 Identities = 115/386 (29%), Positives = 213/386 (55%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +++ D+L L+G    I+E++NT+P+  +VLL+A+   L++ A+  E+ +T  I   
Sbjct: 1   MKLEIDKRDLLSLIGKTQNIVEKRNTMPILINVLLEADQNTLKVFATDLEVSLTDQIKVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VSA  L+DI ++L +G      KEN     + I  G     +      E+P 
Sbjct: 61  VHQAGKVAVSAKSLFDIAKELSEGPITLIKKEN---NWLEIKQGKYTSKIVGISAEEYPI 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     ++ + VLK ++++T ++++T+E RY+LNG+FF +N +      VATDGHR
Sbjct: 118 FPTYNSQAFIKIHAQVLKEMIDKTIYSVSTDETRYHLNGVFFELNPQTG-FKMVATDGHR 176

Query: 181 LAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++        ++     +I+PRK + EI +IL S D +V++++  S+  L   S  + +
Sbjct: 177 MSLVNKPSEDIKVNATQGVIIPRKGLHEIKKILESIDGTVEIAVEGSQFVLKHSSTILMI 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G++PNYQ  IP    +++ ++      ++ RVS++++ + +AV L+LS+ ++ ++ 
Sbjct: 237 RLIEGKYPNYQQFIPQKLPQKVMISRDAFLTSLKRVSLLANQKSKAVLLNLSNGRMEISS 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP++G A E + V Y    + I FN KY+ +I+ +++ D++      F L+   S   +
Sbjct: 297 NNPELGDAKEEIEVDYMGGEIKIGFNAKYITDILTSMNQDKID-----FELNDHLSPGLM 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R           N      V+MPMRI
Sbjct: 352 RP---------HNDQTYTCVVMPMRI 368


>gi|212637851|ref|YP_002314371.1| DNA polymerase III subunit beta [Anoxybacillus flavithermus WK1]
 gi|212559331|gb|ACJ32386.1| DNA polymerase sliding clamp subunit [Anoxybacillus flavithermus
           WK1]
          Length = 378

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 189/395 (47%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R  ++  +    + +  + TIP+   + + A++  + +  S  +I I   IPA 
Sbjct: 1   MKVIIDREHLVRSVQDVMKAVSSRTTIPILTGIKIVASEQGVTLTGSDSDISIESFIPAE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GS+ + A    +IVRKL         K+  + T   I  G + F+L  
Sbjct: 61  EKDRIIVDVIKQGSVVLQARFFSEIVRKLPKETVQIEVKDQFVTT---IRSGKAEFHLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + +    F++ + +LK+++ +T FA++T E R  L G+ + I  E+ +L 
Sbjct: 118 LDPEEYPRLPQIQEENMFKVPADLLKHVIRQTVFAVSTSETRPILTGVNWRI--ENNELT 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  +  +     +I++P K++ E+ +IL   +  V + ++E++I    
Sbjct: 176 CIATDSHRLAMRKAKVETESEAYFNIVIPGKSLNELNKILEESNELVHIVVTENQILFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL+DG +P+   +IP  +  ++ V      QA+DR S+++   R   V+L +L
Sbjct: 236 KHLLFFSRLLDGNYPDTSRLIPTDSQTDVIVKTKEFLQAIDRASLLAREGRNNVVRLSTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   + ++ ++P++GK +E +         + I F+ KY+++ +  +        E+   
Sbjct: 296 ADKIVEISSNSPEIGKVVEEVQCEQVEGEELKISFSAKYMMDALKALEGT-----EIKIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR    DS            +++P+R
Sbjct: 351 FTGAMRPFLIRPLHDDS---------MLQLILPVR 376


>gi|154706526|ref|YP_001423441.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111]
 gi|154355812|gb|ABS77274.1| DNA polymerase III, beta chain [Coxiella burnetii Dugway 5J108-111]
          Length = 369

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 198/387 (51%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT--GAIP 58
           MK+ + R  +L+ L     ++ERK T+P+  +VLL      L I  +  E+E+     + 
Sbjct: 1   MKLNLIRETLLKPLQLVIGVVERKQTLPILSNVLLSIETDQLSITGTDLEVELIGQTKLD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +      +T+    L DI R L D A I  +++ E   ++ +  G S F L + P  +F
Sbjct: 61  KNSTESSRLTLPGRKLMDICRALPDNAPIELYRDKE---KIILRSGRSRFMLSTLPSEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+ +  E      L  S  ++L+ RTHFAMA +++RYYLNG+         KL A+ATDG
Sbjct: 118 PAVERRESQLELALPQSTFRHLLYRTHFAMAQQDVRYYLNGLLLETYPN--KLRAIATDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA   + +         II+PRK + E+LR+L   ++   + +  + I ++    + +
Sbjct: 176 HRLAANTLLVQTNTEHRLQIIIPRKGIIELLRLLEEDEALATIRIGNNHIGVSTNDFTFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G FP+ + VIP   DK+  ++   L+QA+ R +I+ + + + V   L    L + 
Sbjct: 236 SKLIEGRFPDCERVIPKGGDKQFVIDRDILKQALSRTAILCNEKFKGVCFELRQGLLRIL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             NP+   A E +N+ Y    +DI FN  Y+L+I++ ++S       +     +++SSV 
Sbjct: 296 ATNPEQEAAEEEINIDYTGENLDIGFNVGYVLDILNVVNS-----GNIRLTFSTADSSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +  S        ++ +V+MPMR+
Sbjct: 351 INEVENPS--------DSAFVVMPMRL 369


>gi|37522801|ref|NP_926178.1| DNA polymerase III subunit beta [Gloeobacter violaceus PCC 7421]
 gi|35213803|dbj|BAC91173.1| DNA polymerase III beta subunit [Gloeobacter violaceus PCC 7421]
          Length = 376

 Score =  326 bits (835), Expect = 5e-87,   Method: Composition-based stats.
 Identities = 95/393 (24%), Positives = 188/393 (47%), Gaps = 27/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MKI   ++ + + L    R +  + T P+  ++LL+A+   G + +     ++ I     
Sbjct: 1   MKIVCSQAVLNQNLSLVGRAVPSRPTHPILANILLEADGRSGTVTLTGFDLDLGIDTRFA 60

Query: 59  AS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           A  V+  G  T+ A +L DI+ +L + +      E+     +++  G S + +Q     E
Sbjct: 61  AEQVEGSGRTTLPARVLSDIISRLPNESLTMEVSEDNA---ISLVCGSSQYQVQGASAEE 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E     +  L  S     V+R+ FA +T+E +  LNG+     +E ++   VATD
Sbjct: 118 FPKLPELPDSAAHVLPVSEFLEGVQRSLFAASTDESKQILNGVSVKALKEGMEF--VATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIES 234
            HRL+    D     A   +I  ++P ++V E+ +IL ++   SV+V   E ++     +
Sbjct: 176 AHRLSFYRTDFTLPEAGTQAIAAVLPVRSVRELEKILGAQAGDSVEVRFDEKQMIFQFPN 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +++ RL+ G +P+YQ ++P    +   +    L   ++R+++++  +   VKL  +  +
Sbjct: 236 QTLTTRLLGGRYPDYQQLLPKQFQQTADMERKRLIGCLERIAVLADQKNHIVKLDFAPSE 295

Query: 295 --LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             + ++VD PD+G+  ES+ V Y+     + FN +YLLE +  + + +     V F L+ 
Sbjct: 296 HLMTVSVDAPDVGRGRESVPVQYSGQDFSVAFNVRYLLEGLKAMDATD-----VSFCLNG 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++    ++              N  Y++MP+ I
Sbjct: 351 ASDPAVLKPV---------GDGNYQYLIMPVSI 374


>gi|293602696|ref|ZP_06685137.1| DNA-directed DNA polymerase III beta subunit [Achromobacter
           piechaudii ATCC 43553]
 gi|292818887|gb|EFF77927.1| DNA-directed DNA polymerase III beta subunit [Achromobacter
           piechaudii ATCC 43553]
          Length = 371

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 198/388 (51%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L++     +   A+  E++IT     
Sbjct: 3   MQLVQTTRDALLKPLSTVAGIVERRHTLPILANILMRKEGNKVAFIATDLEVQITTHADF 62

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     S TV+A  L DI++ L D   +          ++++    S F LQ+   SEF
Sbjct: 63  GVGQDNESTTVAARKLLDILKALPDTGDVRLAL---ASNKLSVQSAKSRFALQTLAASEF 119

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  S  +    L++L    HFAMA ++IRYYLNG+         ++ AVATD
Sbjct: 120 PTVAQPEQWDVSLTMPQRTLRHLFNMVHFAMAQQDIRYYLNGMLLVFEPG--RVRAVATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA    +    IA+   +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 178 GHRLAHCSTEADG-IAERHEVIVPRKTVLEMQRLLEDSDEVVSIDVAPGQIRFRFGDVEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   V    L+ ++ R +I+++ + + V+L L+ +++ +
Sbjct: 237 VSKLVEGKFPDFTRVIPTNYTRHFMVGREALQGSLQRAAILTTDKFKGVRLQLAQNQMKI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y    +D+ FN  YLL+++ N+  D +        +  +N+S 
Sbjct: 297 SSSNAEQEEAQEEIDIDYGHEALDVGFNVGYLLDVLANVKVDSIQWS----VMPDANASA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 353 LITLPEDDQ---------FKYVVMPMRI 371


>gi|292490172|ref|YP_003525611.1| DNA polymerase III subunit beta [Nitrosococcus halophilus Nc4]
 gi|291578767|gb|ADE13224.1| DNA polymerase III, beta subunit [Nitrosococcus halophilus Nc4]
          Length = 367

 Score =  325 bits (834), Expect = 6e-87,   Method: Composition-based stats.
 Identities = 126/386 (32%), Positives = 206/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ER +I+  L   C ++ER++T+P+  +VLL   +  L + A+  E+EI   +   
Sbjct: 1   MQFSIEREEIVRHLATVCGVVERRHTLPILFNVLLSVEEDRLSLTATDLEVEIRTTLEVL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TVSA    DI R L   A++    E     + ++  G S F L + P  +FPS
Sbjct: 61  HPKGGKTTVSARKFLDICRALPARAELEVQHE---KGQFHVHSGHSRFTLSTLPAEDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T   E V   EL  + LK L+ RT F MA +++RYYL      +   +  + AVATDGHR
Sbjct: 118 TDSLEEVVELELTQAELKQLLHRTVFCMAHQDVRYYL--NGLLLELGEETVYAVATDGHR 175

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAVA ++   +        I+PRKAV E++R+L   +  V++    +++    + LS S 
Sbjct: 176 LAVASLEKGPRREGVQIQSIIPRKAVLELVRLLEESNEPVRLKFGTNQMGAEFQGLSFST 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG+FP+Y+ VIP   +K    +    +QA+ RV+I+++ + + V+L LS+ KL  TV
Sbjct: 236 KLIDGQFPDYKRVIPVGCEKRFVADREQFKQALGRVNILTNDKYRGVRLHLSNLKLQATV 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +   A E + V Y     +I FN  YL+++++ I++     ++V     ++NSS  I
Sbjct: 296 TNLEQESAEEELEVEYQGESFEIAFNNSYLIDVLNIINT-----EQVKLEFTNANSSCLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                        +V + YV+MPMR+
Sbjct: 351 TPI---------GEVGSKYVVMPMRL 367


>gi|150387855|ref|YP_001317904.1| DNA polymerase III subunit beta [Alkaliphilus metalliredigens QYMF]
 gi|149947717|gb|ABR46245.1| DNA polymerase III, beta subunit [Alkaliphilus metalliredigens
           QYMF]
          Length = 368

 Score =  325 bits (833), Expect = 8e-87,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 182/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  +  +  ++  +    + +  K T+P+   + ++ N+  L +  +  EI I   + A 
Sbjct: 1   MHFSCSQKALMHSISIVQKGVSAKTTLPILKGIYIETNNEGLRLVGTDLEIGIEHVMEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V A L  +I+RKL D       KEN    ++ I    + F +  +   EFP 
Sbjct: 61  VLQEGIVVVDARLFSEIIRKLPDAEVDITLKEN---NQLEIKCASTEFNILVYSPDEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    +E+A  + K ++ +T FA + +E R  L G+   I E    L  VA DG+R
Sbjct: 118 LPIVEEDQVYEIAQELFKGMIRQTVFATSQDESRPILTGVLMEIEEN--TLNMVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ +  I         ++VP K + E+ RIL+  ++  + ++L+ +          +  
Sbjct: 176 LALRKGKISGNS--NHKVVVPAKTLNEVNRILNPDEEEPLHITLTNNHALFTAGKTKLIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RL++GEF NY+ ++P  +  ++ +    +  +++R S+++   R   V+  ++ +K+ +T
Sbjct: 234 RLLEGEFINYKQILPKEHRSKVTIKGKEILNSIERASLLAKEGRNNLVRFVVNDEKMVIT 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++GK  E +N+      ++I FN KY ++ +  I      D+EV     ++ S   
Sbjct: 294 S-NSELGKVHEEINIVLEGEDIEIAFNSKYFIDALKVID-----DEEVCLEFTTNLSPGI 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++    +         N  Y+++P+R+
Sbjct: 348 LKPLANE---------NYTYLVLPVRL 365


>gi|256374162|ref|YP_003097822.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827]
 gi|255918465|gb|ACU33976.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827]
          Length = 378

 Score =  325 bits (833), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 97/393 (24%), Positives = 172/393 (43%), Gaps = 25/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-----NDGLLEIKASGPEIEITG 55
           MKI VER  + + +    R +  +  +PV   VLL A     +   L +     E+    
Sbjct: 1   MKIRVERDGLADAVAWVARSLPSRPPVPVLGGVLLDAGAEDGSGDALTVSGFDYEVSAQC 60

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +PA++   G   VS  LL DI + L +       + N  G  + I+ G + F L + P 
Sbjct: 61  GVPATISDGGKALVSGKLLADITKALPN----HPVEINVDGARMTITCGSAKFSLPTMPV 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P+        + EL   V    V +   A   ++    L G+   I   D KL  VA
Sbjct: 117 EDYPALPSMPQ-LAGELPGEVFGEAVAQVAVAAGKDDTLPMLTGVRLEIA--DGKLVLVA 173

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNI 232
           TD  RLA+ E +    +     +++VP K + +  + L +  + +++SL  ++  + L+ 
Sbjct: 174 TDRFRLAMREFEWTPDETLGDVAVLVPAKTLNDSAKTLGASGAKIELSLAANDGLLGLSG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+D +FP Y+ ++P  +     ++   L QA+ RVS+++  R   V+L    
Sbjct: 234 NGRRTTTRLLDADFPKYRQLLPSEHSAAAIISVDTLVQAIKRVSLVA-ERGTQVRLEFGD 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++    D G A E + V Y   P+ I FN  YLLE +       V          +
Sbjct: 293 AGLKLSAGGDDEGSAEEELPVDYQGDPVTIAFNPTYLLEGLQA-----VRTPRAHLSFTT 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +    ++  ++D +  +       Y+LMP+R+
Sbjct: 348 PSRPALLKPVNEDGEVAE----GYVYLLMPVRL 376


>gi|329902528|ref|ZP_08273138.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
 gi|327548756|gb|EGF33395.1| DNA polymerase III beta subunit [Oxalobacteraceae bacterium
           IMCC9480]
          Length = 351

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 106/370 (28%), Positives = 195/370 (52%), Gaps = 22/370 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVC-GSITVSAHLLYD 76
             I+ER++T+P+  ++L++ +   +   ++  E++IT  I         + TV+A  L D
Sbjct: 2   SGIVERRHTLPILANILIRKDGDKVSFLSTDIEVQITTHITVDGGEELAATTVAARKLLD 61

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YVYSFELASS 135
           I+R L +   +S    N+    + +  G S F LQ+    EFP+  + E Y     L   
Sbjct: 62  ILRALPESGDVSLTLANK---RMTVQSGKSRFALQTLAAEEFPTVTQAEHYSAQLSLPQK 118

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
            LK+L    HF+MA ++IRYYLNG+   ++ ++  + AVATDGHRLA  +V+   +  + 
Sbjct: 119 TLKHLFNMVHFSMAQQDIRYYLNGLLLVVDGKN--VIAVATDGHRLAFCQVETEQEFTRQ 176

Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
             +I+PRK + E+ R+L   D  V++ ++ +++ L    + +  +L++G+FP+Y  V+P 
Sbjct: 177 E-VIIPRKTIIELQRLLEDTDELVQIDIAPNQVKLTFADIELISKLVEGKFPDYTRVVPK 235

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
                  +    L +++ R +IM+S + + V+  ++   + ++  N D  +++E + + Y
Sbjct: 236 GYKNNFTLGRDQLLRSLQRAAIMTSDKFKGVRCIVTPGSMKVSSTNADQEESVEEIEIDY 295

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
               +DI FN  YLL++++N+       D+V   L  +NSS  I   D           +
Sbjct: 296 GGDSVDIGFNVTYLLDVLNNLKC-----DQVNIALGDANSSALITIPDN---------AD 341

Query: 376 AFYVLMPMRI 385
             YV+MPMRI
Sbjct: 342 FKYVVMPMRI 351


>gi|111020656|ref|YP_703628.1| DNA polymerase III subunit beta [Rhodococcus jostii RHA1]
 gi|110820186|gb|ABG95470.1| DNA-directed DNA polymerase III beta subunit [Rhodococcus jostii
           RHA1]
          Length = 394

 Score =  324 bits (832), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 28/399 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R +  + +    R +  +  +PV   VLL A +  L +     E+     + A V
Sbjct: 7   KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAEV 66

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + VS  LL DI + L +       +    GT V I+ G + F L + P  ++P  
Sbjct: 67  GSAGQVLVSGKLLADITKSLPNKPVDVTLE----GTRVLITCGSAKFSLPTMPVEDYPQL 122

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + + V    + +   A   ++    L GI   I    + L   ATD  RL
Sbjct: 123 PQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVL--AATDRFRL 179

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL-SSKDSSVKVSLS-------ESRIHLNI 232
           AV E++          ++++P K + E  + L     S V+++L        +  + +  
Sbjct: 180 AVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIVN 239

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    + RL+D EFP ++ ++P  +     V    L +A+ RV++++  R   V+L  S+
Sbjct: 240 DGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVA-ERGAQVRLQFST 298

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++    D G+A E +N  +   P+ I FN  YL++ + ++ S     ++V+F   +
Sbjct: 299 EGLLLSAGGDDAGRAEEGLNAVFQGEPLTIAFNPGYLIDGLSSLHS-----EQVLFGFTT 353

Query: 353 SNSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385
            +    +R   +D     D       +    Y+LMP+R+
Sbjct: 354 PSRPAVLRPATEDEIEPDDSGNFAAPESAYTYLLMPVRL 392


>gi|332286196|ref|YP_004418107.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7]
 gi|330430149|gb|AEC21483.1| DNA polymerase III subunit beta [Pusillimonas sp. T7-7]
          Length = 369

 Score =  324 bits (831), Expect = 1e-86,   Method: Composition-based stats.
 Identities = 119/388 (30%), Positives = 204/388 (52%), Gaps = 22/388 (5%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER+NT+P+  ++LL+     +   A+  E++IT     
Sbjct: 1   MQLVQATRDALLKPLSTVAGIVERRNTLPILANILLRKEGKSVAFIATDLEVQITTHAEF 60

Query: 60  SV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V D   S TV+A  L DI+R L D   I         +++++  G S F LQ+   +EF
Sbjct: 61  GVGDDNESTTVAARKLLDILRALPDSGDIKL---GLASSKLSVQSGKSRFALQTLGATEF 117

Query: 119 PSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P+  + E +  SF L    LK+L    HFAMA ++IRYYLNG+ F      ++  AVATD
Sbjct: 118 PTLAQPEKWDVSFALPQKTLKHLFNMVHFAMAQQDIRYYLNGLLFVFEPGFVR--AVATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA +   +V  I     +IVPRK V E+ R+L   D  V + ++  +I      + +
Sbjct: 176 GHRLAHSG-TVVEGIESKHDVIVPRKTVLEMQRLLGDTDEPVSIDVATGQIRFRFGDVEL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L++G+FP++  VIP +  +   VN   L+ ++ R +I+++ +++ V++ LS ++L +
Sbjct: 235 VSKLVEGKFPDFTRVIPSNYTRHFSVNREILQGSLQRAAILTTDKLKGVRVQLSDNQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N +  +A E +++ Y    +D+ FN  YLL+++ N+ ++ +            N+S 
Sbjct: 295 SSSNAEQEEAQEEIDIDYGHEALDVGFNVSYLLDVLANVKTETIQWS----VQPDVNASA 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D            YV+MPMRI
Sbjct: 351 LITSPEDDQ---------FKYVVMPMRI 369


>gi|302390799|ref|YP_003826619.1| DNA polymerase III subunit beta [Acetohalobium arabaticum DSM 5501]
 gi|302202876|gb|ADL11554.1| DNA polymerase III, beta subunit [Acetohalobium arabaticum DSM
           5501]
          Length = 365

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 99/384 (25%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R +  + +    + I  K+T+P+   +L++  +  L++  +  E+ I   + A+
Sbjct: 1   MQIKIDRKNFYDGIQTVRKAISSKSTLPILSGILIETQEKKLKLVGTDLELGIECRVDAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A+ L +IVR+L +       K++    ++ IS G S F +   P  E+P 
Sbjct: 61  IIKDGAIVLPANHLANIVRELPNKELELELKKD---NKIEISCGLSQFKIHGSPADEYPL 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E      + L+    + ++ R  FA + +E R +L G    I+ E+LK+  VATD +R
Sbjct: 118 LPEVGSGIEYTLSQEKFQAMINRIKFATSDDESRPFLTGGLLSIDNENLKM--VATDSYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  ++++   + K   II+P K + E+ ++L+S+D  ++  +++++I      +++  R
Sbjct: 176 LAYTQLELDKDL-KNEKIIIPSKTLNELSKLLNSEDE-IRFLITDNQILFEFSEITIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP ++  E+++    L  A  R ++++      +K    +DKL +  +
Sbjct: 234 LIEGQFPNYKQVIPDNHKTEIKLKKKELLNATKRSALVARNNSNIIKTKFQNDKLMIESN 293

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            P++G+A E ++   +    +I FN  YL++++  I      ++E++  L    S   I+
Sbjct: 294 APEVGQAYEELSTSQHGDDTEIAFNANYLIDVLKVID-----NEEILIELSGELSPGVIK 348

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
             D D         N  +V+MP+R
Sbjct: 349 EVDND---------NYIHVIMPVR 363


>gi|171056694|ref|YP_001789043.1| DNA polymerase III subunit beta [Leptothrix cholodnii SP-6]
 gi|170774139|gb|ACB32278.1| DNA polymerase III, beta subunit [Leptothrix cholodnii SP-6]
          Length = 381

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 113/398 (28%), Positives = 202/398 (50%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L  L     I+ER++T+P+  +VL++ + G  E+  S  EI++  A     D
Sbjct: 4   LKAAQEQVLGALQAVSGIVERRHTLPILANVLIRKSGGRTELTTSDLEIQVRTAAELGGD 63

Query: 63  VC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               S TV A  L DI+R L     ++         ++ +  G S F LQ+ P  +FP  
Sbjct: 64  ESAFSTTVGARKLIDILRMLPSDQIVTLTA---AQNKLTLQGGKSRFTLQTLPADDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E  ++  +F +    LK+L+++ HFAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QEAADFGPAFSVPQKTLKSLIDQVHFAMAVHDIRYYLNGILFVAEGKTLTL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-------------KDSSVKVSLSESR 227
           LA+A+  + A+I K   +I+PRK V E+ R+L               ++  +++  ++++
Sbjct: 179 LALAQATLEAEIPKQE-VILPRKTVLELQRLLKDDKASKEAAKQEGAEEPRIEMRFADNQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
              +   +    +L++G+FP+Y  VIP ++   + +    L  ++ R +I++S + + V+
Sbjct: 238 AKFSFGGMEFVTKLVEGKFPDYNRVIPRNHKNHVTLGRAPLLASLQRAAILTSEKFKGVR 297

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           ++     L +   N +  +A E + + Y    ++I FN  YL++++ N     V +D V 
Sbjct: 298 VNFEPGTLRIASSNAEQEEAKEELEIDYGGDAIEIGFNVTYLMDVLAN-----VNEDMVT 352

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             L  ++SS  I   +         +    YV+MPMRI
Sbjct: 353 LSLQDASSSALITVPE---------RSGFKYVVMPMRI 381


>gi|89892748|ref|YP_516235.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51]
 gi|89332196|dbj|BAE81791.1| DNA polymerase III beta chain [Desulfitobacterium hafniense Y51]
          Length = 385

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  ++  +    + +  KNT+PV   ++++A    L  +A+  EI I   +PA 
Sbjct: 19  MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 78

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + + L  D+VRKL D   I    +N++   +NI + +S+  L+ +   EFP 
Sbjct: 79  VEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDV---INIHYNESDLSLRGYDPEEFPL 134

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +F L  S+ K ++++T FA + EE R    G    I +  L+L  +ATD HR
Sbjct: 135 LPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTHR 192

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA    +I          I+P K +GEI R+L  +D ++ +  ++++I     ++ +  R
Sbjct: 193 LAYRIAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSR 252

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCMT 298
           LI+G+FPNY+ VIP S   ++ ++    + +V+R S+++        +KLS+ +++L + 
Sbjct: 253 LIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSID 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               ++GK  E M V      + I FN K+LL+++  I S     +E+VF L  S S   
Sbjct: 313 -QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYSPGI 366

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR  D           N  Y+ +P+R
Sbjct: 367 IRPVDDP---------NYLYLALPVR 383


>gi|254818680|ref|ZP_05223681.1| DNA polymerase III subunit beta [Mycobacterium intracellulare ATCC
           13950]
          Length = 399

 Score =  324 bits (830), Expect = 2e-86,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 170/398 (42%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A +
Sbjct: 14  KFRLVRESFADAVSWVAKNLPSRPAVPVLSGVLLSGTDDGLTISGFDYEVSAEAQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L +     +      G  V ++ G++ F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGNARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +   A   ++    L GI   I+ + + L   ATD  RL
Sbjct: 130 PALPDE-TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  +++VP K + E  R  +   + V++SL        +  + ++  
Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARAGADG-AEVRLSLGAGAGVGKDGLLGISGN 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  S  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + + +   P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 SLRLSAGADDVGRAEEDLAIDFAGEPLTIAFNPTYLTDGLGSVHS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGK-DKDSKNNKDN-----KVNAFYVLMPMRI 385
                +R   D DS             +  Y+LMP+R+
Sbjct: 360 GKPALLRPALDDDSHPTGPGPFSALPTDYVYLLMPVRL 397


>gi|81251093|gb|ABB69891.1| DNA polymerase III beta chain [Nitrosovibrio sp. RY3C]
          Length = 370

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 24/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I   +  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+I    P S D
Sbjct: 4   IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63

Query: 63  VC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                 +ITV+A  L DI+R L D  Q++   +      + +  G S F LQ+ P  +FP
Sbjct: 64  ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQE---NRLQVKAGKSRFNLQTLPAEDFP 120

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E     +   L    LKNL+    +AMA ++IRYYLNG+   +  + LK+  VATDG
Sbjct: 121 RLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL  A + +++Q  +   +I+PRKAV E+ + L   +  V V L ++++     ++ + 
Sbjct: 179 HRLGFASI-VMSQPQEKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVLV 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP    K+  +N     Q + R SI+S+ + + V+L L++  L + 
Sbjct: 238 SKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQIV 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y+   +DI FN  YLL++++N++      + V      +NSS  
Sbjct: 298 CSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTC-----ETVQCSFGDANSSAL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     D         +  YV+MPMRI
Sbjct: 353 ITIPGND---------DFKYVVMPMRI 370


>gi|23006928|ref|ZP_00049021.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 328

 Score =  323 bits (829), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 149/329 (45%), Positives = 208/329 (63%), Gaps = 5/329 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TVER+ +L  LGH  R++ER+NTIP+  +VLL+  +  L +KA+  +IE+T  +PA 
Sbjct: 1   MRVTVERAALLRSLGHVHRVVERRNTIPILSNVLLRTGEDGLRLKATDLDIEVTETVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV AH++YDIVRKL +GAQ+S     + G ++ I  G S F L + PE +FP 
Sbjct: 61  VLDAGATTVPAHVIYDIVRKLPEGAQVSLETSGDTG-QMTIRSGRSRFALGALPEGDFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED--LKLCAVATDG 178
               E  +SF +A++ LK L+E+T FA++TEE RYYLNGI+ H  E D  LKL AVATDG
Sbjct: 120 LAAGELPHSFSIAAAELKLLIEKTQFAISTEETRYYLNGIYLHTVEVDGALKLRAVATDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSM 237
           HRLA  E         MP IIVPRKAV EI +++     SV+V LS ++I L     +++
Sbjct: 180 HRLARVETAAPEGSRGMPGIIVPRKAVAEIQKLVDDGGESVQVELSPAKIRLTFAGGVTL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+YQ VIP  NDK L V      +AVDRVS +SS R +AVKL+++  ++ +
Sbjct: 240 ISKLIDGTFPDYQRVIPSGNDKHLTVVRDAFAKAVDRVSTISSERGRAVKLAMADGRVAL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNY 326
           +V NPD G   E+ +       +DI F  
Sbjct: 300 SVTNPDAGSRTEN-STSITRPWLDIGFKP 327


>gi|302552696|ref|ZP_07305038.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes
           DSM 40736]
 gi|302470314|gb|EFL33407.1| DNA polymerase III, beta subunit [Streptomyces viridochromogenes
           DSM 40736]
          Length = 376

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VDEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +  +  ++ +VP K + +  + L+S D  V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-QVTLALSGSGSGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++   +   + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PALDAEADEAYKYLIMPVRL 374


>gi|219666073|ref|YP_002456508.1| DNA polymerase III subunit beta [Desulfitobacterium hafniense
           DCB-2]
 gi|219536333|gb|ACL18072.1| DNA polymerase III, beta subunit [Desulfitobacterium hafniense
           DCB-2]
          Length = 367

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 196/386 (50%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  ++  +    + +  KNT+PV   ++++A    L  +A+  EI I   +PA 
Sbjct: 1   MKIYCSKDSLITGVNTVQKAVSNKNTLPVLQGIMIRAEGQSLIFEATDLEIGIRCVVPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + + L  D+VRKL D   I    +N++   +NI + +S+  L+ +   EFP 
Sbjct: 61  VEKEGVVVLPSRLFSDLVRKLPD-VLIELELQNDV---INIHYNESDLSLRGYDPEEFPL 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +F L  S+ K ++++T FA + EE R    G    I +  L+L  +ATD HR
Sbjct: 117 LPDLFDAETFNLPVSIFKTMIKQTIFACSAEESRPVFTGCLLQIEDGSLRL--IATDTHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA    +I          I+P K +GEI R+L  +D ++ +  ++++I     ++ +  R
Sbjct: 175 LAYRIAEISNPEQIKFQGIIPAKTLGEIYRLLRDEDENLFIRFNQAQIVFQFGAVHLLSR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCMT 298
           LI+G+FPNY+ VIP S   ++ ++    + +V+R S+++        +KLS+ +++L + 
Sbjct: 235 LIEGQFPNYKQVIPQSCQTKVLLSARLFQDSVERASLLARDGSHTSIIKLSVDTERLSID 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               ++GK  E M V      + I FN K+LL+++  I S     +E+VF L  S S   
Sbjct: 295 -QTSELGKISEQMEVKKEGNDVKIAFNSKFLLDVLKIIDS-----EEIVFELSGSYSPGI 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR  D           N  Y+ +P+R
Sbjct: 349 IRPVDDP---------NYLYLALPVR 365


>gi|116668570|ref|YP_829503.1| DNA polymerase III subunit beta [Arthrobacter sp. FB24]
 gi|116608679|gb|ABK01403.1| DNA polymerase III, beta subunit [Arthrobacter sp. FB24]
          Length = 374

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 174/388 (44%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    R +  +  +PV   +LL+A  G + + +   E      IPA 
Sbjct: 1   MKFRVERDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           + V G+I VS  LL DI R L              G +V ++   S+F+L + PE+E+P 
Sbjct: 61  ISVEGTILVSGRLLADICRSLPSAP----VDVETDGNKVTLTCRRSSFHLATMPEAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 + S  +        V +   A + ++    L G+   I ++ + L  +ATD +R
Sbjct: 117 LPALPTI-SGTVPGDSFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237
           LA+ EV        +  S +V  K + E+ + L +S D ++ ++  +SR I       + 
Sbjct: 174 LAMREVPWKPVTPGISTSALVKAKTLNEVAKTLGNSGDINLALADDDSRLIGFESGGRTT 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DG++P  +++ P +      V    L +AV RVS+++  R   V+L+ +  +L +
Sbjct: 234 TSLLVDGDYPKIRSLFPDATPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTDGQLHL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E +        + + FN  YL+E +  I +       V F   ++    
Sbjct: 293 DAGTGEDAQASEELEAQLTGDEITVAFNPHYLIEGLSVIETK-----FVRFSFTTAPKPA 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  +      ++D   +  Y++MP+R+
Sbjct: 348 MITAQVDADGEDQD---DYRYLVMPVRL 372


>gi|190571329|ref|YP_001975687.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|213018725|ref|ZP_03334533.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
 gi|190357601|emb|CAQ55042.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus Pel]
 gi|212995676|gb|EEB56316.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of Culex
           quinquefasciatus JHB]
          Length = 383

 Score =  323 bits (828), Expect = 3e-86,   Method: Composition-based stats.
 Identities = 126/384 (32%), Positives = 217/384 (56%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N I V   + ++A  G +++KA+  +I I  ++ A+
Sbjct: 19  MRFSVSRASLLNTLSRVSGVVERRNAIDVLACINIKAQYGSIKLKATDLDISIFASLTAN 78

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ IS G++NF L +   + FP 
Sbjct: 79  VSAEGEVKISAHTLHDIVKKLPTNLDVNFEMNNQ--GKLLISCGNANFSLPNVVSNNFPV 136

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E ++ Y F L S+ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 137 LEEGDHQYDFTLLSADLVDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 194

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK + E+L++L   +  + + LS+ +I        +  +
Sbjct: 195 LSCIKRPKPEDINGEFGVIIPRKTIMELLKVLDDCNE-INIKLSDRKIKFTCGEYILISK 253

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP S DK++ V  + L   +DRVS++ S +I+++K SL  + L +  +
Sbjct: 254 LIDGTFPDYKAVIPTSQDKQMIVESSKLASVIDRVSVVVSDKIKSIKFSLQENLLTLHSN 313

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A ES+ V Y+   M++ FN +YLL+++  I       ++  F L   NS+  I 
Sbjct: 314 SQECSDATESIEVDYDGALMEVGFNSRYLLDVLSCIE------NKCKFSLSDGNSATIIT 367

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D  S         A Y++MPMR
Sbjct: 368 DEDDPS---------ALYIVMPMR 382


>gi|33864540|ref|NP_896099.1| DNA polymerase III subunit beta [Synechococcus sp. WH 8102]
 gi|33632063|emb|CAE06516.1| DNA polymerase III beta subunit [Synechococcus sp. WH 8102]
          Length = 385

 Score =  323 bits (828), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 188/399 (47%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + ++   E E G +V ++    ++ ++  P  ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLASDSPLTLTTE-ESGEQVQLNSLSGSYQMRGMPADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L +S L   ++ T FA + +E +  L G+     + +L+  A ATDG
Sbjct: 120 PDLPMVESGLTLKLQASGLVQALKGTLFASSGDEAKQLLTGVHLSFTDTNLE--AAATDG 177

Query: 179 HRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLAV +V        +         ++ +P +++ E+ R+++    +  + +     ++
Sbjct: 178 HRLAVLQVNDALQAAAEGTEGEGAAFAVTLPARSLREVERLVAGWRSEDPISLFCDRGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   ++ R ++G +PNY+ +IP    + L ++   L  A++R+++++      VK 
Sbjct: 238 VFLAADQMVTSRTLEGTYPNYRQLIPDGFSRTLTMDRRALVGALERIAVLADQHNNVVKF 297

Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S    S  + ++ D  D+G   ES+    +   + I FN +Y+L+ +  ++      D V
Sbjct: 298 SSQPESGVVLISADAQDVGSGSESLAAELSGDAIQIAFNVRYMLDGLKAMAG-----DRV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   ++  +   +R  +              Y++MP++I
Sbjct: 353 VLHCNAPTTPAVLRPVED--------GDGFIYLVMPVQI 383


>gi|81251089|gb|ABB69888.1| DNA polymerase III beta chain [Nitrosovibrio sp. FJI82]
          Length = 370

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 201/387 (51%), Gaps = 24/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I   +  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+I    P S D
Sbjct: 4   IQTNKDALLKPLQAVTGIVERRHTLPILSNVLIERKREEISFTATDLEIQIATTAPDSKD 63

Query: 63  VC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                 +ITV+A  L DI+R L D  Q++   +      + +  G S F LQ+ P  +FP
Sbjct: 64  ESKQTSAITVAAKKLQDILRALPDNVQVTLEAQE---NRLQVKAGKSRFNLQTLPAEDFP 120

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E     +   L    LKNL+    +AMA ++IRYYLNG+   +  + LK+  VATDG
Sbjct: 121 RLPESSTPQAKITLPQKELKNLLFLVQYAMAQQDIRYYLNGLLLLVEADHLKV--VATDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL  A + +++Q  +   +I+PRKAV E+ + L   +  V V L ++++     ++ + 
Sbjct: 179 HRLGFASI-VMSQPREKKEVILPRKAVLELAKQLHDSEEPVTVELLQNQVRFTFSNIVLV 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG+FP+Y  VIP    K+  +N     Q + R SI+S+ + + V+L L++  L + 
Sbjct: 238 SKVVDGKFPDYNRVIPVGYQKQFTLNRVTFLQTLQRASILSNEKFRGVRLILTAGNLQIV 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A E + + Y+   +DI FN  YLL++++N++      + V      +NSS  
Sbjct: 298 CSNNEQEEAQEELEIDYDNEALDIGFNISYLLDVLNNLTC-----ETVQCSFGDANSSAL 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I     D         +  YV+MPMRI
Sbjct: 353 ITIPGND---------DFKYVVMPMRI 370


>gi|260553771|ref|ZP_05826041.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624]
 gi|260405075|gb|EEW98575.1| DNA polymerase subunit III [Acinetobacter sp. RUH2624]
          Length = 382

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNGQALTITGSDLEVELVASTALS 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                  G  TV A  L DI + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLEAGETTVPARKLMDICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLNTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEILASSSSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNTPLEMSFNAQYLLDVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|239980786|ref|ZP_04703310.1| DNA polymerase III subunit beta [Streptomyces albus J1074]
 gi|291452644|ref|ZP_06592034.1| DNA polymerase III subunit beta [Streptomyces albus J1074]
 gi|291355593|gb|EFE82495.1| DNA polymerase III subunit beta [Streptomyces albus J1074]
          Length = 376

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 92/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ VS  LL DI R L +       + +  G    ++ G S F L + P  E+P+
Sbjct: 61  TEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVNCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGDVFASAAAQVAIAAGRDDTLPVLTGVRVEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIES 234
            AV E     +  +  ++ +VP K + +  + L+S D SV ++L      E  I      
Sbjct: 174 FAVREFLWKPEDPETSAVALVPAKTLLDTAKALTSGD-SVTIALAGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RVS+++  R   V+LS  +  
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVSLVA-ERNTPVRLSFEAGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LTLEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPA-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374


>gi|138893681|ref|YP_001124134.1| DNA polymerase III subunit beta [Geobacillus thermodenitrificans
           NG80-2]
 gi|196249895|ref|ZP_03148591.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16]
 gi|134265194|gb|ABO65389.1| DNA polymerase III, beta subunit [Geobacillus thermodenitrificans
           NG80-2]
 gi|196210771|gb|EDY05534.1| DNA polymerase III, beta subunit [Geobacillus sp. G11MC16]
          Length = 378

 Score =  322 bits (827), Expect = 4e-86,   Method: Composition-based stats.
 Identities = 99/395 (25%), Positives = 184/395 (46%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M I+++R  + + +    + +  + TIP+   + L AN   + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTANAHGMTLTGSDSDISIESFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL      +   E E      I  G S F L  
Sbjct: 61  KEGRLLVDVKRPGSIVLQARFFAEIVKKLPQQ---TIEIETEDNFLTVIRSGHSEFRLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK L+ +T FA++T E R  L G+ + +  E+ +L 
Sbjct: 118 LNAEEYPRLPQIEEENVFQIPADLLKTLIRQTVFAVSTSETRPILTGVNWKV--ENGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +V I A+ A   ++++P K++ E+ +IL   ++ V + ++ +++    
Sbjct: 176 CTATDSHRLAMRKVKIEAENAISYNVVIPGKSLNELSKILDDGNAPVSIVITANQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VKL +L
Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTDSKTNMVVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               L ++  +P++GK  E +         ++I F+ KY+++ +  +  ++     +   
Sbjct: 296 PGGLLEISSISPEIGKVTEQLQTESIEGEELNISFSAKYMMDALRALDGND-----IQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    DS            +++P+R
Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376


>gi|328883702|emb|CCA56941.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 376

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 92/391 (23%), Positives = 166/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPEMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPESPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGKGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PALDAEADEAYKYLIMPVRL 374


>gi|56418537|ref|YP_145855.1| DNA polymerase III subunit beta [Geobacillus kaustophilus HTA426]
 gi|56378379|dbj|BAD74287.1| DNA-directed DNA polymerase III beta subunit [Geobacillus
           kaustophilus HTA426]
          Length = 378

 Score =  322 bits (827), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M I+++R  + + +    + +  + TIP+   + L A    + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL         ++N L     I  G S F L  
Sbjct: 61  KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTVEIETEDNFLTI---IRSGHSEFRLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  E  +L 
Sbjct: 118 LNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGELV 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +V I ++     ++++P K++ E+ +IL   +  V + ++ +++    
Sbjct: 176 CTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VKL +L
Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTESKTTMIVNTKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               L ++  +P++GK  E +         ++I F+ KY+++ +  +   +     +   
Sbjct: 296 PGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTD-----IQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    DS            +++P+R
Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376


>gi|311897308|dbj|BAJ29716.1| putative DNA polymerase III subunit beta [Kitasatospora setae
           KM-6054]
          Length = 376

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 167/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +  A R +  +  +PV   +LL A +G L +     E+     + A 
Sbjct: 1   MKFRVERDVLAEAVAWAARSLPARPPVPVLAGLLLTAQEGSLALSGFDYEVSARVELEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G  V++  G S F L + P  E+P+
Sbjct: 61  VEEAGTVLVSGRLLNDISRNLPNRP----VEISTDGARVSVVCGSSRFTLPTLPVDEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  + V +   A   ++    L G+   IN   + L   ATD +R
Sbjct: 117 LPQMP-TATGTVPGDVFASAVSQAAVAAGRDDTLPVLTGVRVEINGSGITL--AATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E+    +   + ++ +VP K + +I + L S D  V ++LS     E  I      
Sbjct: 174 FAVRELLWKPEQDDINAVALVPAKTLQDIAKSLGSGD-QVTIALSAGGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++GEFP ++++ P        V      +A+ RVS+++  R   V+L+     
Sbjct: 233 RRTTTRLLEGEFPKFRSIFPTEFSAVAAVQTQPFLEALKRVSLVA-ERNTPVRLNFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A E ++       + I FN  YL E +  I +             +  
Sbjct: 292 LTLEAGSGDDAQATERVDADLEGDDISIAFNPGYLEEGLKAIDAAY-----AQLSFTTPT 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLTGK---PAVDAEPDDAYQYLIMPVRL 374


>gi|302877247|ref|YP_003845811.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans
           ES-2]
 gi|302580036|gb|ADL54047.1| DNA polymerase III, beta subunit [Gallionella capsiferriformans
           ES-2]
          Length = 368

 Score =  322 bits (826), Expect = 5e-86,   Method: Composition-based stats.
 Identities = 123/385 (31%), Positives = 202/385 (52%), Gaps = 24/385 (6%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--ASV 61
            +E+  +L+ L     I+ERK T+P+  +VL++   G +   A+  EI+IT  I   A  
Sbjct: 5   KIEKETLLKPLQVVIGIVERKQTMPILSNVLIEKELGKIRFTATDLEIQITTTIETGADH 64

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +   +ITV    L +I+R L D +++S   +     +  I    S F LQS P  +FP+ 
Sbjct: 65  ESNAAITVGGKKLQEILRILPDQSKVSIEVKE---NKAQIKSNKSKFNLQSLPAQDFPTL 121

Query: 122 -KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        L+   LK L     FAMA +++RYYLNG+ F I  ED    AVATDGHR
Sbjct: 122 SNQLADARKISLSQRALKALFSSVQFAMAQQDVRYYLNGVLFVI--EDNIFRAVATDGHR 179

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA   + I +   K+  II+PRKA+ E+ ++LS  D  +++  S  ++      + ++ +
Sbjct: 180 LAYNAIAIESSSEKIE-IIIPRKAIVELSKLLSDDDQLIELEFSSQQLKATFSGIELTTK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FP+YQ VIP +    L +N T ++QA+ R +I+S+ + + V+  L+   LC+   
Sbjct: 239 LIEGKFPDYQRVIP-NYTNHLSINRTLVQQALQRAAILSNEKFRGVRFVLTEKNLCIISS 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A   +   Y+   +DI FN  YL++ + ++ S     +  +F   + NSS+ I 
Sbjct: 298 NSEQEEAQVEIETDYHGEAIDIGFNVNYLMDGLSSVHS-----EMAIFSFGNPNSSILIT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D          +   YV+MPMRI
Sbjct: 353 SPDD---------LEFRYVVMPMRI 368


>gi|324999883|ref|ZP_08120995.1| DNA polymerase III subunit beta [Pseudonocardia sp. P1]
          Length = 386

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 164/397 (41%), Gaps = 25/397 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLL------QANDGLLEIKASGPEIEIT 54
           MK  VER  + +      R +  +  +PV   VL+      +     L +     E    
Sbjct: 1   MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIQSDGSDETAGEKLTVSGFDYETSAR 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
             + A+V   G + VS  LL DI R L              G    I+ G+S F L + P
Sbjct: 61  VELDATVGEPGRMLVSGRLLADITRALPSKPVDLVVD----GARATINCGNSRFSLPTMP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P   +         A ++   + +    +   ++    L GI   I    L L   
Sbjct: 117 VEDYPQLPDMPQKAGSVAADALAAAVAQVAVAS-GRDDTLPMLTGIRLEIEGSQLTL--A 173

Query: 175 ATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232
           ATD  RLAV E++   + A +  ++++P K + E+ + L+   +  V +S  +  + L  
Sbjct: 174 ATDRFRLAVRELEWSPEDASISTAVLIPAKTLAEVAKTLAGSGTVDVALSAGDGMLGLTG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+D EFP ++ +IP  +   + ++   L +A+ RVS+++  R+  +++    
Sbjct: 234 GGRRSTSRLLDAEFPRFRQLIPAEHTTAVELDVAMLVEAIKRVSLVA-DRVAQIRMEFGE 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D L +     D+G A E +    +  P+ I FN  YLL+ +  + +     D       +
Sbjct: 293 DGLRLAAGGDDVGSAEEELPCALDGNPLTIAFNPGYLLDALGALHT-----DRAQLTFTT 347

Query: 353 SNSSVFIRGKD----KDSKNNKDNKVNAFYVLMPMRI 385
            N    +R        D +     K    ++LMP+R+
Sbjct: 348 PNRPALVRPVPKPATDDGEAPSPEKSGYLHLLMPVRL 384


>gi|226362896|ref|YP_002780676.1| DNA polymerase III subunit beta [Rhodococcus opacus B4]
 gi|226241383|dbj|BAH51731.1| DNA polymerase III beta subunit [Rhodococcus opacus B4]
          Length = 394

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 92/399 (23%), Positives = 173/399 (43%), Gaps = 28/399 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R +  + +    R +  +  +PV   VLL A +  L +     E+     + A V
Sbjct: 7   KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEQGLTVSGFDYEVSAQVRVAAEV 66

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + VS  LL DI + L +       +    GT V I+ G + F L + P  ++P  
Sbjct: 67  GSAGQVLVSGKLLADITKSLPNKPVDVTLE----GTRVLITCGSAKFSLPTMPVEDYPQL 122

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + + V    + +   A   ++    L GI   I    + L   ATD  RL
Sbjct: 123 PQLPQ-QTGSIPADVFSEAISQVAVAAGKDDTLPMLTGIRVEIERNAIVL--AATDRFRL 179

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL-SSKDSSVKVSLS-------ESRIHLNI 232
           AV E++          ++++P K + E  + L     S V+++L        +  + +  
Sbjct: 180 AVRELEWSPANPDTTAAVLIPAKTLSESAKTLAGDATSPVELALGSGSAVGNDGLLGIVN 239

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    + RL+D EFP ++ ++P  +     V    L +A+ RV++++  R   V+L  S+
Sbjct: 240 DGRRTTTRLLDAEFPKFRQLLPSEHTALATVEIAPLVEAIKRVALVA-ERGAQVRLQFST 298

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L ++    D G+A E +N  +    + I FN  YL++ + ++ S     ++V+F   +
Sbjct: 299 EGLLLSAGGDDAGRAEEGLNAVFQGESLTIAFNPGYLIDGLSSLHS-----EQVLFGFTT 353

Query: 353 SNSSVFIRG------KDKDSKNNKDNKVNAFYVLMPMRI 385
            +    +R       +  DS N    +    Y+LMP+R+
Sbjct: 354 PSRPAVLRPATEEEIEPDDSGNFAAPESAYTYLLMPVRL 392


>gi|254432559|ref|ZP_05046262.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001]
 gi|197627012|gb|EDY39571.1| DNA polymerase III, beta subunit [Cyanobium sp. PCC 7001]
          Length = 466

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 97/403 (24%), Positives = 184/403 (45%), Gaps = 35/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++P
Sbjct: 79  MKLVCSQTELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLSLGIQTSLP 138

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A L  +IV +L     I+    +  G +V++     N+ ++  P  +F
Sbjct: 139 ASVEASGAITLPARLFGEIVSRLSAEGPITIQSPD-GGEQVDLISLSGNYQMRGMPAEDF 197

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +      L +  L   +  T FA + +E +  L G+   ++   L+    ATDG
Sbjct: 198 PDLPLVQSGQPIRLDADALVKGLRATLFASSGDEAKQLLTGVHLRLDAGALE--CAATDG 255

Query: 179 HRLAV---AEVDIVAQIAKM---------PSIIVPRKAVGEILRILSS--KDSSVKVSLS 224
           HRLAV   A  +  A+ +            ++ VP +++ E+ R+LSS   +  + +   
Sbjct: 256 HRLAVLKLAHGEAPAETSDDAADQADGDPFAVTVPARSLRELERLLSSRQSEEPLSLFCE 315

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
             ++        ++ R +DG +PNY  +IP S  + +  +   L  A++RV++++     
Sbjct: 316 RGQVVFLWSDQVLTSRSLDGTYPNYPQLIPDSFVRSISSDRRALIAALERVAVLADQHNN 375

Query: 285 AVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            VKL+       L +  D  D+G+  ES+        + I FN +YLL+ +  ++S    
Sbjct: 376 VVKLTADPASGTLQVQADAQDVGRGSESVPAVIEGESLQIAFNVRYLLDGLKAMAS---- 431

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++VV   ++  +   +R  D              Y++MP++I
Sbjct: 432 -EQVVLHCNAPTTPAVLRPGDA---------SGFTYLVMPVQI 464



 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 31/191 (16%), Positives = 71/191 (37%), Gaps = 18/191 (9%)

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E P             + + L   ++    A+A+      L  +    +    +L    
Sbjct: 67  PENPFVPTAPLPMKLVCSQTELSASLQLVSRAVASRPTHPVLANVLLTADAGTGRLSLT- 125

Query: 176 TDGHRLAV-AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS--LSESRIHLNI 232
             G  L++  +  + A +    +I +P +  GEI+  L S +  + +       ++ L  
Sbjct: 126 --GFDLSLGIQTSLPASVEASGAITLPARLFGEIVSRL-SAEGPITIQSPDGGEQVDLIS 182

Query: 233 ESLSMSVR-LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ------A 285
            S +  +R +   +FP+   V    + + +R++   L + + R ++ +S   +       
Sbjct: 183 LSGNYQMRGMPAEDFPDLPLV---QSGQPIRLDADALVKGL-RATLFASSGDEAKQLLTG 238

Query: 286 VKLSLSSDKLC 296
           V L L +  L 
Sbjct: 239 VHLRLDAGALE 249


>gi|160872676|ref|ZP_02062808.1| DNA polymerase III, beta subunit [Rickettsiella grylli]
 gi|159121475|gb|EDP46813.1| DNA polymerase III, beta subunit [Rickettsiella grylli]
          Length = 370

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 116/390 (29%), Positives = 217/390 (55%), Gaps = 25/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R  +L+ L     +IER+ T+P+  ++L++ ND  L +  +  E+E+ G I   
Sbjct: 1   MQFTINREILLKPLQLVTAVIERRQTLPILSNLLIRLNDRNLSLLGTDMEVELAGRITLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ T  A  L DI R L + +++ F    + G ++ +  G   F L + P ++FP
Sbjct: 61  KPGQSGTTTAPARKLMDICRSLPEESELKF---QQKGDKLYLQSGRCRFNLSTLPATDFP 117

Query: 120 ---STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
              +         F L+   L++L+E T+FAMA +++RY+LNG+ + ++   L+  AVAT
Sbjct: 118 ISEALDNHPEQAKFVLSPKGLRSLIESTNFAMAHQDVRYFLNGMLWELDRGSLR--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESL 235
           DGHRLA+   +    +     IIVPRKA+ E+ R+LS +++  + + L+++++ + ++  
Sbjct: 176 DGHRLALNVKEANITV-DNNQIIVPRKAIYELSRLLSDEENDSLTIFLTKNQLKVAMQDY 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           + + +LIDG FP+Y  VIP S DK   ++    + ++ RVS++S+ + ++V L L  + L
Sbjct: 235 TFTSKLIDGTFPDYDRVIPKSGDKIFEIDRDLFKASLLRVSVLSNDKHKSVCLELRRNLL 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +  +N +   A + +++ Y+   + I FN  YL+++++++ +       V   L S+ +
Sbjct: 295 RIFANNLEQEDAEDYLDIAYHGKDISIAFNINYLIDVLNSLPA-----GPVKITLTSAEA 349

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SV +  K+KD+           YV+MPMRI
Sbjct: 350 SVRLESKEKDAG---------LYVIMPMRI 370


>gi|302341688|ref|YP_003806217.1| DNA polymerase III, subunit beta [Desulfarculus baarsii DSM 2075]
 gi|301638301|gb|ADK83623.1| DNA polymerase III, beta subunit [Desulfarculus baarsii DSM 2075]
          Length = 370

 Score =  322 bits (826), Expect = 6e-86,   Method: Composition-based stats.
 Identities = 104/389 (26%), Positives = 204/389 (52%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T  + D+   L  +  ++E++ ++P+  +VLL+A DG L + A+  EI   G++ A 
Sbjct: 1   MELTARKEDLARNLQKSQSVVEKRTSMPILSNVLLEAADGGLTVTATDLEISFQGSLEAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G +TV A   Y+I+++L         KEN+    ++++ G +++ L     +++P+
Sbjct: 61  VNKPGRVTVPARKFYEIIKELPSDDVYLKEKENQ---HIHLTGGRASYDLVGLSAADYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             +   +   E+   VL  ++E+T F+++ E+ R+ L G+F      D +  L  V+TDG
Sbjct: 118 LPDIADLSCLEVDGDVLGEMIEKTIFSISQEDTRFNLAGLFVQKRRRDDREILRMVSTDG 177

Query: 179 HRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++ + +I   A +     +I+PRK V E+ R+  ++D  + + L+ S   +  +  +
Sbjct: 178 HRLSLIDREIPGLAALDIAGGVIIPRKGVAEMRRL--AEDGGLSLGLNASFAVVKKDGAT 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +R+ +G FP+Y+ V+P +  +   VN     + + RVSI+++ R Q V+LS     L 
Sbjct: 236 LILRMQEGSFPDYEVVVPKNAGRVALVNRQAFGEVIRRVSILATDRFQGVQLSFKEGLLE 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   NPD+G+A E++ V Y      + FN +Y L++   + S+      +       N+ 
Sbjct: 296 LISQNPDLGEARETIEVDYEGESFTVGFNARYFLDLCGAMRSEV-----ISLAFVDENNP 350

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+G+  +             V+MPMR+
Sbjct: 351 CLIKGEGDE---------GFLSVIMPMRL 370


>gi|325127477|gb|EGC50406.1| DNA polymerase III, beta subunit [Neisseria meningitidis N1568]
          Length = 367

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|294496877|ref|YP_003560577.1| DNA polymerase III subunit beta [Bacillus megaterium QM B1551]
 gi|295702244|ref|YP_003595319.1| DNA polymerase III subunit beta [Bacillus megaterium DSM 319]
 gi|294346814|gb|ADE67143.1| DNA polymerase III, beta subunit [Bacillus megaterium QM B1551]
 gi|294799903|gb|ADF36969.1| DNA polymerase III, beta subunit [Bacillus megaterium DSM 319]
          Length = 378

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 182/395 (46%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +++  +++ +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MKFIIQKDYLVQSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPNE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ + A    +IV+KL          + +      I  G + F L  
Sbjct: 61  EEGKEIVDIQKPGSVVLPARFFSEIVKKLPKDIV---ELDVQSHFLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F L + +LKN++ +T FA++T E R  L G+ + ++ ++L   
Sbjct: 118 LDAEEYPHLPQIEENNMFRLPTDLLKNMIRQTVFAVSTSETRPILTGVNWKVDGKELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  I        ++++P K++ E  +IL      V + ++E+++    
Sbjct: 176 CIATDSHRLALRKATIETGNEATYNVVIPGKSLSEFSKILDDSHELVDIVITENQVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL+DG +P+   +IP  +  ++ +N     Q++DR S+++   R   VKL +L
Sbjct: 236 KHLLFFSRLLDGNYPDTSRLIPADSKTDVILNVKEFLQSIDRASLLAREGRNNVVKLSTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ ++P++GK IE +     +   + I F+ KY+L+ +  +   +     +   
Sbjct: 296 DEGIVEISSNSPEIGKVIEEVQSQSISGEELKISFSAKYMLDALKALEGTD-----IKIN 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + DS            +++P+R
Sbjct: 351 FTGAMRPFVIRTLEDDS---------MLQLILPVR 376


>gi|15677733|ref|NP_274896.1| DNA polymerase III subunit beta [Neisseria meningitidis MC58]
 gi|7227158|gb|AAF42232.1| DNA polymerase III, beta subunit [Neisseria meningitidis MC58]
 gi|316985518|gb|EFV64465.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
 gi|325133541|gb|EGC56204.1| DNA polymerase III, beta subunit [Neisseria meningitidis M13399]
 gi|325143791|gb|EGC66108.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M01-240013]
 gi|325200954|gb|ADY96409.1| DNA polymerase III, beta subunit [Neisseria meningitidis H44/76]
 gi|325206809|gb|ADZ02262.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M04-240196]
          Length = 367

 Score =  322 bits (825), Expect = 7e-86,   Method: Composition-based stats.
 Identities = 113/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++R SI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|239998134|ref|ZP_04718058.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
 gi|240013315|ref|ZP_04720228.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI18]
 gi|240015760|ref|ZP_04722300.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA6140]
 gi|240079897|ref|ZP_04724440.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
 gi|240112105|ref|ZP_04726595.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
 gi|240114851|ref|ZP_04728913.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
 gi|240117053|ref|ZP_04731115.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
 gi|240120387|ref|ZP_04733349.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID24-1]
 gi|240122691|ref|ZP_04735647.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
 gi|240124879|ref|ZP_04737765.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
 gi|240127392|ref|ZP_04740053.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
 gi|254492914|ref|ZP_05106085.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291]
 gi|260441334|ref|ZP_05795150.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
 gi|268593986|ref|ZP_06128153.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
 gi|268596040|ref|ZP_06130207.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
 gi|268598164|ref|ZP_06132331.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
 gi|268600508|ref|ZP_06134675.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
 gi|268602741|ref|ZP_06136908.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
 gi|268681290|ref|ZP_06148152.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
 gi|268683461|ref|ZP_06150323.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
 gi|268685767|ref|ZP_06152629.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291044692|ref|ZP_06570401.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
 gi|293397794|ref|ZP_06642000.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62]
 gi|226511954|gb|EEH61299.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 1291]
 gi|268547375|gb|EEZ42793.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae 35/02]
 gi|268549828|gb|EEZ44847.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA19]
 gi|268582295|gb|EEZ46971.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae MS11]
 gi|268584639|gb|EEZ49315.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID18]
 gi|268586872|gb|EEZ51548.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID1]
 gi|268621574|gb|EEZ53974.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae PID332]
 gi|268623745|gb|EEZ56145.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-92-679]
 gi|268626051|gb|EEZ58451.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae SK-93-1035]
 gi|291011586|gb|EFE03582.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae DGI2]
 gi|291611740|gb|EFF40809.1| DNA polymerase III, beta subunit [Neisseria gonorrhoeae F62]
 gi|317165577|gb|ADV09118.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae
           TCDC-NG08107]
          Length = 367

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++     + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|225025477|ref|ZP_03714669.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC
           23834]
 gi|224941761|gb|EEG22970.1| hypothetical protein EIKCOROL_02377 [Eikenella corrodens ATCC
           23834]
          Length = 367

 Score =  322 bits (825), Expect = 8e-86,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 196/384 (51%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ERK+T+P+  +VL++   G   I A+  EI+I    P +  
Sbjct: 4   LEAERDTLLKPLQAVTGIVERKHTLPILSNVLIERTGGQTNILATDLEIQIHTHGPHTDA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A  L DI+R L +GA ++    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  EDFRITTNAKKLQDILRALPEGAIVAL---DWAQNRLTLKTGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E V S F L     +N++ +  +AMA ++IRYYLNG+   +   +L+L  VATDGHRL
Sbjct: 121 IGEEVVSAFTLPQETFRNMLSQVQYAMAVQDIRYYLNGLLMQVEGSNLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + K   +I+PRK V E+ ++L+  +  V V L  +++        +  ++
Sbjct: 179 AYSAAVIDADLPK-AEVILPRKTVLELFKLLNRPEEPVTVELLNNQVRFRCNDTVVVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG+FP++  VIP  NDK   +       A++R +I+++ + + V+L L    L +   N
Sbjct: 238 VDGKFPDFNRVIPQDNDKIFLLGRQPFLGALERAAILANEKFRGVRLQLRPGLLSVLCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ N+ +     +++      +N S     
Sbjct: 298 SEQEEAREELEIAYQGAELEVGFNINYLMDVLRNVHA-----EDIQLAFGDANRSTLFTI 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D           +  Y++MPMRI
Sbjct: 353 PDN---------ADFKYIVMPMRI 367


>gi|41406100|ref|NP_958936.1| DNA polymerase III subunit beta [Mycobacterium avium subsp.
           paratuberculosis K-10]
 gi|13431485|sp|Q9L7L6|DPO3B_MYCPA RecName: Full=DNA polymerase III subunit beta
 gi|6969268|gb|AAF33689.1| putative dnaN [Mycobacterium avium subsp. paratuberculosis]
 gi|41394448|gb|AAS02319.1| DnaN [Mycobacterium avium subsp. paratuberculosis K-10]
          Length = 399

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 167/398 (41%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A +
Sbjct: 14  KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L +     +      G  V ++ G + F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +   A   ++    L GI   I+ + + L   ATD  RL
Sbjct: 130 PTLPEE-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  +++VP K + E  R      S V++SL        +  + ++  
Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRLSLGAGAGVGKDGLLGISGN 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  S  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 SLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
                +R    D      +        +  Y+LMP+R+
Sbjct: 360 GKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397


>gi|296314156|ref|ZP_06864097.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC
           43768]
 gi|296839191|gb|EFH23129.1| DNA polymerase III, beta subunit [Neisseria polysaccharea ATCC
           43768]
          Length = 367

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLMLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|254804281|ref|YP_003082502.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14]
 gi|254667823|emb|CBA03814.1| DNA polymerase III, beta chain [Neisseria meningitidis alpha14]
 gi|254670915|emb|CBA07499.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha153]
 gi|325204853|gb|ADZ00307.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M01-240355]
          Length = 367

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|325139556|gb|EGC62096.1| DNA polymerase III, beta subunit [Neisseria meningitidis CU385]
          Length = 367

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I    P S  
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTTGPESGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    ++  FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|161869313|ref|YP_001598480.1| DNA polymerase III subunit beta [Neisseria meningitidis 053442]
 gi|161594866|gb|ABX72526.1| DNA polymerase III, beta subunit [Neisseria meningitidis 053442]
          Length = 367

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|116071808|ref|ZP_01469076.1| DNA polymerase III subunit beta [Synechococcus sp. BL107]
 gi|116065431|gb|EAU71189.1| DNA polymerase III subunit beta [Synechococcus sp. BL107]
          Length = 385

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 189/399 (47%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+   E E G +V ++    ++ ++  P  ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   ++ T FA + +E +  L G+    N + L+  A ATDG
Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177

Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLAV +VD             ++  ++ +P +++ E+ R+++    +  V +     ++
Sbjct: 178 HRLAVLQVDDALQDAASASDDASEGFAVTLPARSLREVERLMAGWRSEDPVSLFCDRGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   ++ R ++G +PNY  +IP   ++ L ++   L  A++R+++++      VK 
Sbjct: 238 VFLAADQMVTSRTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVKF 297

Query: 289 SLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +   D+  + ++ D  D+G   ES+        + I FN +YLL+ +  + S     + V
Sbjct: 298 TSQPDEGVVQISADAQDVGSGSESLAASLTGDAIQIAFNVRYLLDGLKAMGS-----ERV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   ++  +   ++ +               Y++MP++I
Sbjct: 353 VLHCNAPTTPAVLKPEGDAEA--------FTYLVMPVQI 383


>gi|321313669|ref|YP_004205956.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5]
 gi|291482371|dbj|BAI83446.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. natto
           BEST195]
 gi|320019943|gb|ADV94929.1| DNA polymerase III subunit beta [Bacillus subtilis BSn5]
          Length = 378

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + + + +  L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSE--LL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +     +  ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             + + ++ ++P++GK +E++         ++I F+ KY+L+ +  +        E+   
Sbjct: 296 PAESIEISSNSPEIGKVVEAIAADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|262200048|ref|YP_003271256.1| DNA polymerase III subunit beta [Gordonia bronchialis DSM 43247]
 gi|262083395|gb|ACY19363.1| DNA polymerase III, beta subunit [Gordonia bronchialis DSM 43247]
          Length = 388

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 91/400 (22%), Positives = 166/400 (41%), Gaps = 29/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R +  + +    R +  +  +PV   V+L A+DG L I     E+    +I A 
Sbjct: 1   MKFRVARDEFADSVAWVARSLPSRPPVPVLGCVVLGADDG-LTISGFDYEVSAQESIAAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + VS  LL DI + L +            G  V I+ G + F L + P  ++P 
Sbjct: 60  IAEPGQVLVSGRLLADITKALPNKP----VDVTLDGARVAIACGSAKFSLPTMPVEDYPQ 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  + + +    + +   A   ++    L G+   I    + L   ATD  R
Sbjct: 116 LPDVP-AISGTIPTQLFAEAISQVAIAAGRDDTLPMLTGVRVEIEGSTVVL--AATDRFR 172

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKD-SSVKVSLSESRIH-------LN 231
           LAV E+           +++VP K + E  +   ++    V ++              + 
Sbjct: 173 LAVRELQWEPTDPDTSGAVLVPAKTLSESAKTAGAEGTGVVSLAFGNGSAIGNDGILGIL 232

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            E+   + RL+D EFP ++ ++P S+     ++   L +A+ RV++++  R   V+L   
Sbjct: 233 GETKRTTTRLLDAEFPKFRQLLPASHTAIATIDSAPLIEAIKRVALVA-ERGAQVRLEFG 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              + +T    + GKA E + V +    + I FN  YLL+ +  I++D V      F   
Sbjct: 292 EGSVLLTAGGDEAGKAEEELPVQFAGEALTIAFNPGYLLDGLSAINADTVD-----FGFT 346

Query: 352 SSNSSVFIR------GKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +    +R          +S      +    Y+LMP+R+
Sbjct: 347 TPSRPAVLRPSSGEQPAADESGAFAAPESAFTYLLMPVRL 386


>gi|302535571|ref|ZP_07287913.1| DNA polymerase III, beta subunit [Streptomyces sp. C]
 gi|302444466|gb|EFL16282.1| DNA polymerase III, beta subunit [Streptomyces sp. C]
          Length = 376

 Score =  321 bits (824), Expect = 9e-86,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  +  ++   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGD--RVTLASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +  +  ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGQGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDSPA-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADEAYKYLIMPVRL 374


>gi|78183585|ref|YP_376019.1| DNA polymerase III subunit beta [Synechococcus sp. CC9902]
 gi|78167879|gb|ABB24976.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9902]
          Length = 385

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 189/399 (47%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKVVCSQSELNAALQLVSRAVATRPTHPVLANVLLTADAGTNRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+   E E G +V ++    ++ ++  P  ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLASDSPITLATE-ESGEQVQLTSLSGSYQMRGLPADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   ++ T FA + +E +  L G+    N + L+  A ATDG
Sbjct: 120 PELPMVESGMTLKLQPAGLVQALKGTLFASSADEAKQLLTGVHLRFNAKALE--AAATDG 177

Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLAV +V+             A+  ++ +P +++ E+ R+++    D  V +     ++
Sbjct: 178 HRLAVLQVEDALEDAAANSDDAAEGFAVTLPARSLREVERLMAGWRSDDPVSLFCDRGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   ++ R ++G +PNY  +IP   ++ L ++   L  A++R+++++      VK 
Sbjct: 238 VFLAADQMVTSRTLEGTYPNYGQLIPDGFNRTLALDRRGLIAALERIAVLADQHNNVVKF 297

Query: 289 SLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +   D+  + ++ D  D+G   ES+        + I FN +YLL+ +  + S     D V
Sbjct: 298 TSQPDEGVVQISADAQDVGSGSESLAANLTGDAIQIAFNVRYLLDGLKAMGS-----DRV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   ++  +   ++ +               Y++MP++I
Sbjct: 353 VLHCNAPTTPAVLKPEGDAEA--------FTYLVMPVQI 383


>gi|261417502|ref|YP_003251184.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC61]
 gi|319765159|ref|YP_004130660.1| DNA polymerase III subunit beta [Geobacillus sp. Y412MC52]
 gi|261373959|gb|ACX76702.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC61]
 gi|317110025|gb|ADU92517.1| DNA polymerase III, beta subunit [Geobacillus sp. Y412MC52]
          Length = 378

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 178/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M I+++R  + + +    + +  + TIP+   + L A    + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATASGVTLTGSDSDISIESFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL          E E      I  G S F L  
Sbjct: 61  KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTV---EIEREDNFLTIIRSGHSEFRLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  E  +L 
Sbjct: 118 LNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGELV 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +V I ++     ++++P K++ E+ +IL   +  V + ++ +++    
Sbjct: 176 CTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VKL +L
Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               L ++  +P++GK  E +         ++I F+ KY+++ +  +   +     +   
Sbjct: 296 PGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTD-----IQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    DS            +++P+R
Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376


>gi|261393233|emb|CAX50856.1| DNA polymerase III beta subunit [Neisseria meningitidis 8013]
          Length = 367

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|119964048|ref|YP_945835.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1]
 gi|119950907|gb|ABM09818.1| DNA polymerase III, beta subunit [Arthrobacter aurescens TC1]
          Length = 374

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 178/388 (45%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R  + E +    R +  +  +PV   +LL+A  G + + +   E      IPA 
Sbjct: 1   MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           + V G+I VS  LL DI R L         +    G++V ++   S+F+L + PESE+P+
Sbjct: 61  IAVEGTILVSGRLLADICRSLPSAP----VEVETDGSKVTLTCRRSSFHLATMPESEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S  L        V +   A + ++    L G+   I ++ + L  +ATD +R
Sbjct: 117 LPALP-AISGTLPGDAFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237
           LA+ EV        +  S +V  K + E+ + L  S D ++ ++  +SR I       + 
Sbjct: 174 LAMREVPWKPVTPGISTSALVKSKTLNEVAKTLGGSGDINLALADDDSRLIGFESGGRTT 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DG++P  +++ P S      V    L +AV RVS+++  R   V+L+ +   L +
Sbjct: 234 TSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTQGLLNL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E +    +   + + FN  YL+E +  I +       V F   ++    
Sbjct: 293 DAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIETKY-----VRFSFTTAPKPA 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  +   ++ + +++ +  Y++MP+R+
Sbjct: 348 MITAQ---AEADGEDQDDYRYLVMPVRL 372


>gi|254773055|ref|ZP_05214571.1| DNA polymerase III subunit beta [Mycobacterium avium subsp. avium
           ATCC 25291]
          Length = 399

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 167/398 (41%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A +
Sbjct: 14  KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L +     +      G  V ++ G + F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +   A   ++    L GI   I+ + + L   ATD  RL
Sbjct: 130 PTLPEE-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  +++VP K + E  R      S V++SL        +  + ++  
Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRLSLGAGAGVGKDGLLGISGN 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  +  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFTEG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 SLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
                +R    D      +        +  Y+LMP+R+
Sbjct: 360 GKPALLRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 397


>gi|226303491|ref|YP_002763449.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4]
 gi|226182606|dbj|BAH30710.1| DNA polymerase III beta subunit [Rhodococcus erythropolis PR4]
          Length = 394

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 28/399 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R +  + +    R +  +  +PV   VLL A +  L +     E+     + A V
Sbjct: 7   KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTVSGFDYEVSAQVRVSADV 66

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G   VS  LL DI + L +       +    GT V IS G + F L + P  ++P  
Sbjct: 67  TTAGQALVSGRLLADITKSLPNKPVDVTLE----GTRVLISCGSAKFSLPTMPVEDYPQL 122

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  S  +   +    + +   A   ++    L GI   I +  + L   ATD  RL
Sbjct: 123 PTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVL--AATDRFRL 179

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNI 232
           AV E++          ++++P K + E  + L+   +S V+++L        +  + +  
Sbjct: 180 AVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLGIVN 239

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    + RL+D EFP ++ ++P  +     V  T L +A+ RV++++  R   V++  S+
Sbjct: 240 DGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVA-ERGAQVRMQFSA 298

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D L ++    D G+A E++N  +    + I FN  YL++ ++++ S     + V+F   +
Sbjct: 299 DGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFGFTT 353

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +R   ++     ++           Y+LMP+R+
Sbjct: 354 PSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 392


>gi|290959003|ref|YP_003490185.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22]
 gi|260648529|emb|CBG71640.1| DNA polymerase III, beta chain [Streptomyces scabiei 87.22]
          Length = 376

 Score =  321 bits (824), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 94/391 (24%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+PS
Sbjct: 61  VDEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +  +  ++ +VP K + +  + L+S D SV ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-SVILALSGSGSGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PALDAEADEAYKYLIMPVRL 374


>gi|229491191|ref|ZP_04385019.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121]
 gi|229321929|gb|EEN87722.1| DNA polymerase III, beta subunit [Rhodococcus erythropolis SK121]
          Length = 403

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 174/399 (43%), Gaps = 28/399 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R +  + +    R +  +  +PV   VLL A +  L +     E+     + A V
Sbjct: 16  KFRVSREEFADSVAWVARSLPSRPPVPVLGGVLLDATEAGLTVSGFDYEVSAQVRVSADV 75

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G   VS  LL DI + L +       +    GT V IS G + F L + P  ++P  
Sbjct: 76  TTAGQALVSGRLLADITKSLPNKPVDVTLE----GTRVLISCGSAKFSLPTMPVEDYPQL 131

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  S  +   +    + +   A   ++    L GI   I +  + L   ATD  RL
Sbjct: 132 PTLPQ-QSGSIPVDLFSEAISQVAVAAGKDDTLPMLTGIRVEIEQNSIVL--AATDRFRL 188

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNI 232
           AV E++          ++++P K + E  + L+   +S V+++L        +  + +  
Sbjct: 189 AVRELEWTPANPDVQAAVLIPAKTLSESAKTLAGNANSPVELALGSGTTIGNDGLLGIVN 248

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    + RL+D EFP ++ ++P  +     V  T L +A+ RV++++  R   V++  S+
Sbjct: 249 DGRRTTTRLLDAEFPKFRQLLPAQHTAMATVEVTPLIEAIKRVALVA-ERGAQVRMQFSA 307

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D L ++    D G+A E++N  +    + I FN  YL++ ++++ S     + V+F   +
Sbjct: 308 DGLLLSAGGDDAGRAEETLNASFQGEALTIAFNPGYLIDGLNSLHS-----ENVLFGFTT 362

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +R   ++     ++           Y+LMP+R+
Sbjct: 363 PSRPAVLRPAAEEEPTADESGNFAAPSSEYTYLLMPVRL 401


>gi|126658042|ref|ZP_01729194.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
 gi|126620680|gb|EAZ91397.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
          Length = 393

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 97/407 (23%), Positives = 184/407 (45%), Gaps = 38/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK    +SD+   L    R +  + T P+  +VL+ A+     + + A    + I  +  
Sbjct: 1   MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLMVADSQKNRVSLTAFDLSLGIETSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF--FKENELGTEVNISHGDSNFYLQSFPES 116
           A V   G IT+ A LL DIV +L +G         EN     V +      F +++    
Sbjct: 61  ADVSEDGQITLPAKLLNDIVSRLPEGEITLMSEETENNDSHIVALKCASGQFQVRAMDAE 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP     E   S +L   +L   ++   FA +++E +  L G+      + L+    AT
Sbjct: 121 EFPPLPTVEEGESLQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEF--AAT 178

Query: 177 DGHRLAVAEVDIVAQIAKM--------------PSIIVPRKAVGEILRILSSKDSSVKVS 222
           DGHRL+V E  +  Q  +                ++ +P +A+ E+ R++ +++ S  ++
Sbjct: 179 DGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRNESDAIA 238

Query: 223 L--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           L   E+++   +    ++VR +DG +PNYQ +IP    + + +    L  +++RV++++ 
Sbjct: 239 LQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVAVLAD 298

Query: 281 VRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +   VK +      ++ ++V+  D+G A ESM         +I FN KYL++ +  + +
Sbjct: 299 QKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLKALPT 358

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +L+  N  V           N    +   Y++MP++I
Sbjct: 359 K-----EIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391


>gi|325961452|ref|YP_004239358.1| DNA polymerase III subunit beta [Arthrobacter phenanthrenivorans
           Sphe3]
 gi|323467539|gb|ADX71224.1| DNA polymerase III, beta subunit [Arthrobacter phenanthrenivorans
           Sphe3]
          Length = 374

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 172/388 (44%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R  + E +    R +  +  +PV   +LL+A  G + + +   E      I A 
Sbjct: 1   MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEIGAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I VS  LL DI R L              G +V ++   S+F+L + PE+E+P 
Sbjct: 61  IRDEGTILVSGRLLADICRSLPSAP----VDVETDGNKVTLTCRRSSFHLATMPEAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S  +        V +   A + ++    L G+   I ++ + L  +ATD +R
Sbjct: 117 LPALP-AISGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237
           LA+ EV        +  S +V  K + E+ + L +S D ++ +S  +SR I       + 
Sbjct: 174 LAMREVPWKPVTPGISTSALVKAKTLNEVAKTLGNSGDINLALSDDDSRLIGFESGGRTT 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DG++P  +++ P S      V    L +AV RVS+++  R   V+L+ +  +L +
Sbjct: 234 TSLLVDGDYPKIRSLFPDSTPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTQGQLNL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E +    +   + + FN  YL+E +  I +       V F   ++    
Sbjct: 293 DAGTGEDAQASEELEAQLSGEDITVAFNPHYLVEGLSVIETK-----FVRFSFTTAPKPA 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  +      ++D   +  Y++MP+R+
Sbjct: 348 MITAQADADGEDQD---DYRYLVMPVRL 372


>gi|302543963|ref|ZP_07296305.1| DNA polymerase III, beta subunit [Streptomyces hygroscopicus ATCC
           53653]
 gi|302461581|gb|EFL24674.1| DNA polymerase III, beta subunit [Streptomyces himastatinicus ATCC
           53653]
          Length = 376

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILLKAEEGALSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G  V +  G S F L + P  E+P+
Sbjct: 61  VEDDGTVLVSGRLLADICRALPNRP----VEISSDGVRVTVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V      +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +   + ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++   +   + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374


>gi|255320701|ref|ZP_05361878.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SK82]
 gi|262380668|ref|ZP_06073821.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SH164]
 gi|255302317|gb|EET81557.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SK82]
 gi|262297616|gb|EEY85532.1| DNA polymerase III, beta subunit [Acinetobacter radioresistens
           SH164]
          Length = 382

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 211/400 (52%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  +V +QA+   L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQASPQALTITGSDLEVELVASTGLS 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L DI + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLQPGETTVPARKLMDICKSLPSAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    +       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLNHDNSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDETQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E    +  ++    IVPRKAV E+ R+LS +D  + + +    +++ I++  
Sbjct: 177 DGHRLALCETLASSTASQPVQAIVPRKAVAELQRLLSIEDEQLTLLIGRELLNVTIQTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK +++     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGEITVRFTTKLIDGKFPDYRRVIPRGGDKTVQIAHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ ++D L +  +NP+  +AIE + + YN  P+++ FN +YLLE+++ +       D+
Sbjct: 297 VFLNFNADSLQLRANNPEQDEAIEDLAIQYNNSPLEMSFNAQYLLEVLNVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           VV  +  +N SV ++            + +  YV+MPMR+
Sbjct: 352 VVMTMTEANQSVLVQDP---------AQQDQTYVVMPMRV 382


>gi|254393578|ref|ZP_05008711.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|294813741|ref|ZP_06772384.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|326442162|ref|ZP_08216896.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|197707198|gb|EDY53010.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
 gi|294326340|gb|EFG07983.1| DNA polymerase III subunit beta [Streptomyces clavuligerus ATCC
           27064]
          Length = 376

 Score =  321 bits (823), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 168/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VDEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPEMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +  +  ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGKGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++ +     + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAHLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374


>gi|328551702|gb|AEB22194.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens TA208]
 gi|328909961|gb|AEB61557.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens LL3]
          Length = 378

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  EDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++  E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDSQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             D L ++ ++P++GK +E++     +   ++I F+ KY+++ +  +   +     +   
Sbjct: 296 PADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGAD-----IRIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|325129494|gb|EGC52323.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           OX99.30304]
          Length = 361

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 114/380 (30%), Positives = 199/380 (52%), Gaps = 21/380 (5%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66
           R  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P        
Sbjct: 2   RDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGAGDFR 61

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP     E 
Sbjct: 62  ITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMNVGED 118

Query: 127 V-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
           +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRLA A 
Sbjct: 119 ISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRLAYAA 176

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
             I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++IDG+
Sbjct: 177 CAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGK 235

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L S  L +   N +  
Sbjct: 236 FPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSNNEQE 295

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
           +A E + + Y    +++ FN  YL++++ NI S     D++      +N S         
Sbjct: 296 EAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTVP--- 347

Query: 366 SKNNKDNKVNAFYVLMPMRI 385
                 N  N  Y++MPMRI
Sbjct: 348 ------NNPNFKYIVMPMRI 361


>gi|257091665|ref|YP_003165306.1| DNA polymerase III subunit beta [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
 gi|257044189|gb|ACV33377.1| DNA polymerase III, beta subunit [Candidatus Accumulibacter
           phosphatis clade IIA str. UW-1]
          Length = 376

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 121/392 (30%), Positives = 211/392 (53%), Gaps = 28/392 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61
           I   R  +L  L     I+ER++T+P+  +VLL+    +L + A+  EI+IT  +  A  
Sbjct: 4   IKTRRDTLLGPLQAVSGIVERRHTLPILSNVLLEKRGDVLTLLATDIEIQITTWSTGAVG 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G++TV A  L +I+R L + A +S   +++    + ++ G S F LQ+ P  +FP  
Sbjct: 64  EGDGAVTVGARKLQEILRSLPESADVSLILDDK---RLQLTAGKSRFSLQTLPADDFPCM 120

Query: 122 KEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E     F ++    ++L+ +T ++MA +++RYYLNG+   ++  +L+  AVATDGHR
Sbjct: 121 ALSEGETKKFTVSQKQFRHLLAQTQYSMAAQDVRYYLNGLLLIVDGSELR--AVATDGHR 178

Query: 181 LAVAEVDIV-------AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           LA + + +           A    +IVPRK V E+ R+L+  D  + + +  ++I     
Sbjct: 179 LAYSSMPLDDAAQAPREPGAARQELIVPRKTVLELSRLLTDTDEPLSIEMLATQIRFQFG 238

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            +S+  +LIDG FP+Y+ VIP +    + V+   L Q++ R +I+++ + + V+L LS+ 
Sbjct: 239 HVSLVSKLIDGRFPDYERVIPATLRNVVSVSRGLLLQSMIRAAILTNEKFRGVRLILSAG 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   N +  +A E + V YN  P+D+ FN  YLL++++N      VDD + +  + +
Sbjct: 299 SLKIMAANAEQEEAQEEIEVEYNGEPLDVGFNVAYLLDVLNN-----TVDDTIEWGFNDA 353

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           NSS  +     D            YV+MPMRI
Sbjct: 354 NSSALLTIPGND---------RFKYVVMPMRI 376


>gi|254387091|ref|ZP_05002365.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1]
 gi|194345910|gb|EDX26876.1| DNA polymerase III subunit beta [Streptomyces sp. Mg1]
          Length = 376

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 168/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  +  ++   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGD--RVTLASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKSLTSGD-TVTLALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDANLEGDDISIAFNPTFLLDGLSAIDSPA-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADEAYKYLIMPVRL 374


>gi|154684520|ref|YP_001419681.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens FZB42]
 gi|154350371|gb|ABS72450.1| DnaN [Bacillus amyloliquefaciens FZB42]
          Length = 378

 Score =  321 bits (822), Expect = 1e-85,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  DDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++  E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             D L ++ ++P++GK +E++     +   ++I F+ KY+++ +  +   +     +   
Sbjct: 296 PADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGAD-----IRIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|296167142|ref|ZP_06849549.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
 gi|295897464|gb|EFG77063.1| DNA-directed DNA polymerase III beta subunit [Mycobacterium
           parascrofulaceum ATCC BAA-614]
          Length = 399

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 89/398 (22%), Positives = 166/398 (41%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A +
Sbjct: 14  KFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLSGSDEGLTISGFDYEVSAEAQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DI R L +     +      G  V ++ G + F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDITRALPNKPVDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +   A   ++    L GI   I+   + L   ATD  RL
Sbjct: 130 PVLPEE-TGTLPADLFAEAISQVAIAAGRDDTLPMLTGIRVEISGNTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  +++VP K + E  R  +   S V++SL        +  + ++  
Sbjct: 187 AVRELTWAASSPDIEAAVLVPAKTLAEAARAGADG-SEVRLSLGAGSGVGKDGLLGISGN 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  S  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + +  + S     + V F   + 
Sbjct: 305 SLRLSAGADDVGRAEEDLAVDFVGEPLTIAFNPTYLTDGLAAVHS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
                +R    D      +        +  Y+LMP+R+
Sbjct: 360 GKPALLRPASADDSPPTGDGPFAALPTDYVYLLMPVRL 397


>gi|158319061|ref|YP_001511568.1| DNA polymerase III subunit beta [Alkaliphilus oremlandii OhILAs]
 gi|158139260|gb|ABW17572.1| DNA polymerase III, beta subunit [Alkaliphilus oremlandii OhILAs]
          Length = 368

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 99/387 (25%), Positives = 189/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +  ++  +    + +  K+T+P+   + L+A +  L +  +  EI I   + A+
Sbjct: 1   MKFFCNQKALMHSISIVQKAVSSKSTLPIIKGIYLEAYEDHLRLVGTDMEIGIDHVMEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI V A L  +I+R+L D       +EN    ++ I    + F + S+  SEFP 
Sbjct: 61  IIEEGSIVVDARLFSEIIRRLPDYEVEVSLQEN---NQLLIKCAATEFNILSYNASEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E     E++  + KN++ +T FA A +E R  L G+   I ++   L  VA DG+R
Sbjct: 118 LPEIEEDQIHEISQDLFKNMIRQTVFATAQDETRPILTGVLMEIEDD--ILSMVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ +  + A +     +++P K + E+ RI++  +D ++K+SL+ +     + +  +  
Sbjct: 176 VALRKGKLNAHLNNR--VVIPGKTLNEVNRIMTGEEDENIKISLTNNHALFTVGNTKLIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RL++GEF NY  +IP      ++VN  +L  +++R S++    R   VK S++  K+ + 
Sbjct: 234 RLLEGEFMNYNQIIPKEFKSRVKVNTRSLLDSIERASLLGKEGRNNLVKFSITDYKMVIN 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E + +      + I FN KY ++ +  I      D+ V     ++ S   
Sbjct: 294 S-NSELGNVHEEILIELEGDDLQIAFNSKYFIDALKVID-----DESVYLEFTTNLSPGI 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+    D         N  Y+++P+R+
Sbjct: 348 IKPITND---------NTIYLVLPVRL 365


>gi|118445177|ref|YP_879297.1| DNA polymerase III subunit beta [Clostridium novyi NT]
 gi|118135633|gb|ABK62677.1| DNA polymerase III, beta subunit [Clostridium novyi NT]
          Length = 367

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 107/386 (27%), Positives = 186/386 (48%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + L A D  L +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKDNELTLIGSDIDLSIETKIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+I V + +  +I+RKL + +      +N     + I    S F L      EFP 
Sbjct: 61  VEEEGTIVVDSKIFGEIIRKLPNSSVKINTTDN---NSIEIFCEKSKFDLIHMDADEFPG 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +   VLKN+++ T FA+A +E R  L GI F + +E  KL  VA DG+R
Sbjct: 118 LPRINENMIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDE--KLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +     S ++P K   E+ +ILS  + +V ++ + + I  N+    +  R
Sbjct: 176 LALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKNVNITFTPNHILFNLGETKVISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP     ++    + L   ++R S+M        VK  +  D L +T 
Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E +N+      + I FN KYL++++  +      DDE++   DSS S   I
Sbjct: 294 -NSQLGKVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K++ +           Y+++P+R+
Sbjct: 348 KSKEEKA---------YTYLVLPVRL 364


>gi|121634190|ref|YP_974435.1| DNA polymerase III subunit beta [Neisseria meningitidis FAM18]
 gi|218767524|ref|YP_002342036.1| DNA polymerase III subunit beta [Neisseria meningitidis Z2491]
 gi|304388448|ref|ZP_07370554.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|120865896|emb|CAM09632.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
           FAM18]
 gi|121051532|emb|CAM07829.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
           Z2491]
 gi|254671989|emb|CBA04456.1| DNA polymerase III, beta subunit [Neisseria meningitidis alpha275]
 gi|304337565|gb|EFM03728.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           meningitidis ATCC 13091]
 gi|319409788|emb|CBY90096.1| DNA polymerase III beta subunit [Neisseria meningitidis WUE 2594]
 gi|325131540|gb|EGC54247.1| DNA polymerase III, beta subunit [Neisseria meningitidis M6190]
 gi|325135493|gb|EGC58111.1| DNA polymerase III, beta subunit [Neisseria meningitidis M0579]
 gi|325139205|gb|EGC61751.1| DNA polymerase III, beta subunit [Neisseria meningitidis ES14902]
 gi|325141558|gb|EGC64025.1| DNA polymerase III, beta subunit [Neisseria meningitidis 961-5945]
 gi|325197602|gb|ADY93058.1| DNA polymerase III, beta subunit [Neisseria meningitidis G2136]
 gi|325201463|gb|ADY96917.1| DNA polymerase III, beta subunit [Neisseria meningitidis
           M01-240149]
 gi|325207444|gb|ADZ02896.1| DNA polymerase III, beta subunit [Neisseria meningitidis NZ-05/33]
          Length = 367

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 115/384 (29%), Positives = 202/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  DDFRITTNAKKFQDILRALPAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L S  L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|255066617|ref|ZP_05318472.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256]
 gi|255049201|gb|EET44665.1| DNA polymerase III, beta subunit [Neisseria sicca ATCC 29256]
          Length = 367

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L D A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPDSAIVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L+    K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++    + V L  +++       ++  ++
Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|29830860|ref|NP_825494.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680]
 gi|29607973|dbj|BAC72029.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis
           MA-4680]
          Length = 376

 Score =  321 bits (822), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLRAEDGALSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +     ++ +VP K + +  + L+S D SV ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-SVTLALSGSGSGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSIAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++   +   + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PAVDAEADEAYKYLIMPVRL 374


>gi|16077070|ref|NP_387883.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221307811|ref|ZP_03589658.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. 168]
 gi|221312133|ref|ZP_03593938.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. NCIB 3610]
 gi|221317066|ref|ZP_03598360.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. JH642]
 gi|221321329|ref|ZP_03602623.1| DNA polymerase III subunit beta [Bacillus subtilis subsp. subtilis
           str. SMY]
 gi|118797|sp|P05649|DPO3B_BACSU RecName: Full=DNA polymerase III subunit beta
 gi|40015|emb|CAA26218.1| unnamed protein product [Bacillus subtilis]
 gi|467392|dbj|BAA05238.1| beta subunit of DNA polymerase III [Bacillus subtilis]
 gi|2632269|emb|CAB11778.1| DNA polymerase III (beta subunit) [Bacillus subtilis subsp.
           subtilis str. 168]
          Length = 378

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + + + +  L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSE--LL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +     +  ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQDSKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             + + ++ ++P++GK +E++         ++I F+ KY+L+ +  +        E+   
Sbjct: 296 PAESIEISSNSPEIGKVVEAIVADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|89101118|ref|ZP_01173954.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
 gi|89084173|gb|EAR63338.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
          Length = 378

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 184/395 (46%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R  +++ +    + +  + TIP+   + + A++  + +  S  +I I   IP  
Sbjct: 1   MKFQIQRDSLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL          + +   +  I  G S F L  
Sbjct: 61  SDGNEIVEISRTGSIVLQAKFFSEIVKKLPTDKV---EIDVQNHLQTVIRSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   +      F + + +LK +V +T FA++T E R  L G+ + +  ED +L 
Sbjct: 118 LDAEEYPHLPQLSEEKIFRIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--EDAELT 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  +  +  +  ++++P K++ E+ +IL   +  + + ++E+++    
Sbjct: 176 CIATDSHRLALRKAKVETEANESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           E+L    RL++G +P+   +IP  +  E+ +      QA+DR S+++   R   VK  ++
Sbjct: 236 ENLLFFSRLLEGNYPDTTRLIPNESKTEIGMQTKEFLQAIDRASLLAREGRNNVVKFSTI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++GK +E +   +     + I F+ KY+++ +  +        E+   
Sbjct: 296 EDGVVEISSNTPEIGKVVEEVQSQFIEGEDLKISFSAKYMMDALKALEGT-----EIKVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + +S            +++P+R
Sbjct: 351 FTGAMRPFVIRPMNDESI---------LQLILPVR 376


>gi|297193295|ref|ZP_06910693.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis
           ATCC 25486]
 gi|197718390|gb|EDY62298.1| DNA polymerase III subunit beta [Streptomyces pristinaespiralis
           ATCC 25486]
          Length = 376

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 166/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG +   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGAVSFSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VDEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADEAYKYLIMPVRL 374


>gi|238021643|ref|ZP_04602069.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147]
 gi|237866257|gb|EEP67299.1| hypothetical protein GCWU000324_01545 [Kingella oralis ATCC 51147]
          Length = 367

 Score =  320 bits (821), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 210/384 (54%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L  A  I+ERK+T+P+  +VLL++  G + I A+  EI+I      S  
Sbjct: 4   LQTERDALLKPLQTATGIVERKHTLPILANVLLESKGGKVHILATDLEIQIHTQGADSEQ 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               +T +A  L DI+R L + A +    +     ++ +  G S F LQ+ P ++FP+  
Sbjct: 64  GDFQLTTNAKKLQDILRALPENATVQLDLDEH---KLTLKAGKSRFNLQTLPPADFPTMN 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E  ++ F L    LK+++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 ISETTHTQFSLPQETLKHMINQVQYSMAVQDIRYYLNGLLLQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++AK   +I+PRK V E++++L+    ++++ L ++++       ++  ++
Sbjct: 179 AYASTTIEAELAKQ-DVILPRKTVLELVKLLNQPKEAIQIELLDNQVRFQCGDTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP+Y  VIP  NDK   +N   L  A++R +I+++ + + V+L L+   L +T  N
Sbjct: 238 IDGKFPDYNRVIPLDNDKIFVINRATLLGALERSAILANEKFRGVRLQLAPGSLKITCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN ++L++++ + +S     D++      +N S  I  
Sbjct: 298 SEQEEASEELEIAYAGESLEVGFNIQFLMDVLRSANS-----DDIQIAFGDANRSTLITL 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N     Y++MPMRI
Sbjct: 353 P---------NNAEFKYIVMPMRI 367


>gi|296330038|ref|ZP_06872522.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305672700|ref|YP_003864371.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii str. W23]
 gi|296153077|gb|EFG93942.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii ATCC 6633]
 gi|305410943|gb|ADM36061.1| DNA polymerase III subunit beta [Bacillus subtilis subsp.
           spizizenii str. W23]
          Length = 378

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDDGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  EGDKEIVTIEQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + + + +  L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKVEQSE--LL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +     +  ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIPEDRSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             + + ++ ++P++GK +E++         ++I F+ KY+L+ +  +        E+   
Sbjct: 296 PAESIEISSNSPEIGKVVEAILADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|269926108|ref|YP_003322731.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC
           BAA-798]
 gi|269789768|gb|ACZ41909.1| DNA polymerase III, beta subunit [Thermobaculum terrenum ATCC
           BAA-798]
          Length = 376

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 103/393 (26%), Positives = 185/393 (47%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + ++   L    R +  + T+P+  ++LL    G L+++A+  E+ IT  + A 
Sbjct: 1   MKLWCLQENLSRGLSVVSRAVSPRATLPILGNILLATEGGRLKLQATNLELVITTWVGAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G  TV A L  + +  L +   +    E   G +++++ G S   +      +FP+
Sbjct: 61  IEREGVTTVPARLFTEFISSLPNEKVLLELNE---GHKLHVAAGHSAADIHGMDPEDFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + + VLK ++E+  FA AT++ R  L G+ F I+ +  KL   A DG R
Sbjct: 118 VPSASEEPTLRIDAEVLKGMIEQVVFAAATDDSRPVLAGVLFKIDGD--KLTLAAADGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSMS 238
           L+V E  I    A+  ++IVP KA+  + R++   +  V+++++ +  +I    E++++ 
Sbjct: 176 LSVKEQSI-NSSAESVNVIVPAKALDALSRLIGDHEEQVEITINPNKSQIVFQAENINVI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS------ 292
            RLIDG FPNY  +IP        V+    R+A+ R  I       AVKL++S       
Sbjct: 235 SRLIDGNFPNYSQIIPKQYVTRTVVHTKEFREAITRALIFGRDSSNAVKLTISPGDEGDT 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            K+ ++    ++G   +S+          I FN +YL +++  I S     D+V     S
Sbjct: 295 GKIVVSATAAEVGSGSDSLEATVEGEGGQIAFNGRYLTDVLSVIES-----DQVALETQS 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            NS   IR     S           +V+MPM +
Sbjct: 350 PNSPGVIRPVGNGS---------YTHVIMPMHL 373


>gi|241759458|ref|ZP_04757562.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114]
 gi|241320240|gb|EER56573.1| DNA polymerase III, beta subunit [Neisseria flavescens SK114]
          Length = 367

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L D A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  ++
Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|261380782|ref|ZP_05985355.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703]
 gi|284796246|gb|EFC51593.1| DNA polymerase III, beta subunit [Neisseria subflava NJ9703]
          Length = 367

 Score =  320 bits (820), Expect = 2e-85,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L D A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  ++
Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|319639359|ref|ZP_07994110.1| DNA polymerase III [Neisseria mucosa C102]
 gi|317399543|gb|EFV80213.1| DNA polymerase III [Neisseria mucosa C102]
          Length = 367

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L D A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGNDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  ++
Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTM 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|148241100|ref|YP_001226257.1| DNA polymerase III subunit beta [Synechococcus sp. RCC307]
 gi|147849410|emb|CAK26904.1| DNA polymerase III beta subunit [Synechococcus sp. RCC307]
          Length = 379

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 177/393 (45%), Gaps = 24/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   ++++   L    R I  + T PV  +VL+ A+   G + +      + I  +  
Sbjct: 1   MKLVCSQAELNGSLQLVSRAIAGRPTHPVLANVLVTADAAAGRISLTGFDLSLGIQTSFA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           A V+  G+IT+ A L  DIV +L  DG       E E  TE++   G   + ++     +
Sbjct: 61  AVVESSGAITLPAKLFTDIVSRLPADGPLTLACPEGEEQTELSALTGS--YQMRGLSAED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP     +      L+       +  T FA + +E +  L GI   + +  L+    ATD
Sbjct: 119 FPDLPLAQNGQPLLLSGEAFAEGLRSTLFASSGDESKQILTGIHLKVEDGGLEF--AATD 176

Query: 178 GHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIES 234
           GHRLAV       Q  A+  ++ VP +++ E+ R+LS+   + S+ +     ++      
Sbjct: 177 GHRLAVRRNGAGGQEGAESFAVTVPARSLRELERLLSARPSEESISLFCDRGQVVFLWAD 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-- 292
             ++ R ++G +PNY  +IP S  + + +       A++R+++++      VKL+     
Sbjct: 237 QVLTSRTLEGTYPNYGQLIPESFARTISLERKPFIAALERIAVLADQHNNVVKLTADPAS 296

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +L ++ D  D+G   ES+    N   + + FN +YLLE +  +      D  V   L+S
Sbjct: 297 GQLQLSADALDVGSGSESLAAQINGEEIAMAFNVRYLLEGLKAM-----ADATVRLNLNS 351

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S   +   +       D +    Y++MP++I
Sbjct: 352 PTSPAVLSADE-------DGEAGFTYLVMPVQI 377


>gi|78211559|ref|YP_380338.1| DNA polymerase III subunit beta [Synechococcus sp. CC9605]
 gi|78196018|gb|ABB33783.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9605]
          Length = 385

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 92/399 (23%), Positives = 182/399 (45%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+     L +      + I  ++ 
Sbjct: 1   MKVVCSQSELNGALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV++ G+IT+ A LL +IV +L   + ++   ++  G +V ++    ++ ++     ++
Sbjct: 61  ASVEISGAITLPARLLGEIVSRLSSDSPVTLAVDD-SGEQVQLTSLSGSYQMRGMSADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L    L   ++ T FA + +E +  L G+    N+  L+  A ATDG
Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177

Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLAV  V+          A      ++ +P +++ E+ R+++S   D  V +     ++
Sbjct: 178 HRLAVLNVEDALQDEAVTDAVDDDGFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   ++ R ++G +PNY  +IP    +   ++   L  A++R+++++      VK 
Sbjct: 238 VFLAADQMVTSRTLEGTYPNYGQLIPDGFARTFGMDRRALIAALERIAVLADQHNNVVKF 297

Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S       + ++ D  D+G   ES+        M I FN +YLL+ +  + S     D +
Sbjct: 298 SSQPEDGVVQISADAQDVGSGSESLPANLEGDAMQIAFNVRYLLDGLKAMGS-----DRI 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   ++  +   +R  D              Y++MP++I
Sbjct: 353 VLHCNAPTTPAVLRSDDASEA--------FTYLVMPVQI 383


>gi|225077252|ref|ZP_03720451.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens
           NRL30031/H210]
 gi|224951396|gb|EEG32605.1| hypothetical protein NEIFLAOT_02307 [Neisseria flavescens
           NRL30031/H210]
          Length = 367

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 118/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L D A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPDSALVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGSDVSATFSLTQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++   S+ V L ++++       ++  ++
Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSESITVELLDNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTM 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|297158792|gb|ADI08504.1| DNA polymerase III subunit beta [Streptomyces bingchenggensis
           BCW-1]
          Length = 376

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A D  L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEDSTLSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G  V +  G S F L + P  E+P+
Sbjct: 61  VEDDGTVLVSGRLLADICRALPNRP----VEISTDGVRVTVVCGSSRFTLHTLPVEEYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGDVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +   + ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+L+     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLTFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + GK      + +      Y++MP+R+
Sbjct: 347 KPALLSGK---PAMDAEADEAYKYLIMPVRL 374


>gi|169794208|ref|YP_001712001.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE]
 gi|184156324|ref|YP_001844663.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
           ACICU]
 gi|213155389|ref|YP_002317434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057]
 gi|215481763|ref|YP_002323945.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|239503908|ref|ZP_04663218.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB900]
 gi|260558094|ref|ZP_05830305.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|301345944|ref|ZP_07226685.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB056]
 gi|301512868|ref|ZP_07238105.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB058]
 gi|301594681|ref|ZP_07239689.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB059]
 gi|332854714|ref|ZP_08435501.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150]
 gi|332865594|ref|ZP_08436434.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113]
 gi|332873308|ref|ZP_08441263.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059]
 gi|169147135|emb|CAM84994.1| DNA polymerase III, beta chain [Acinetobacter baumannii AYE]
 gi|183207918|gb|ACC55316.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
           ACICU]
 gi|193075922|gb|ABO10499.2| DNA polymerase III [Acinetobacter baumannii ATCC 17978]
 gi|213054549|gb|ACJ39451.1| DNA polymerase III, beta subunit [Acinetobacter baumannii AB0057]
 gi|213987621|gb|ACJ57920.1| DNA polymerase III, beta subunit [Acinetobacter baumannii
           AB307-0294]
 gi|260408448|gb|EEX01755.1| DNA polymerase III, beta subunit [Acinetobacter baumannii ATCC
           19606]
 gi|322506193|gb|ADX01647.1| DNA polymerase III, beta chain [Acinetobacter baumannii 1656-2]
 gi|332727871|gb|EGJ59273.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013150]
 gi|332735246|gb|EGJ66323.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6013113]
 gi|332738514|gb|EGJ69386.1| DNA polymerase III, beta subunit [Acinetobacter baumannii 6014059]
          Length = 382

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                  G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|289207189|ref|YP_003459255.1| DNA polymerase III subunit beta [Thioalkalivibrio sp. K90mix]
 gi|288942820|gb|ADC70519.1| DNA polymerase III, beta subunit [Thioalkalivibrio sp. K90mix]
          Length = 367

 Score =  320 bits (820), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 112/386 (29%), Positives = 205/386 (53%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+++ +R  + + L       E++ T+P+  +V L+ ++ G + +  +  E+   G    
Sbjct: 1   MELSFQREAMTDALQRIVGAAEKRLTMPILGNVRLRPDERGGIRMDTTDLELAWQGEAAG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++     +TVS   L D+V+   + ++I    +   G  +++    S F L + P ++FP
Sbjct: 61  TIPGECDVTVSVRKLLDVVKAAPEDSEIRATID---GERMSVGFAGSRFSLATLPGADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             + +   ++ ++  + L+ L+E T F+MA +++RYYL G+    +   L+  AVATDGH
Sbjct: 118 DWESKSSEWTLDIPQNRLRRLLEATMFSMAQQDVRYYLQGLLLVASGHSLR--AVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+AE ++   I      IVPRK + E+ R LS  D  V+V  SE ++  ++ +  +  
Sbjct: 176 RLALAEAELDQAIDGRLEKIVPRKTIAELRRNLSDDDVPVRVGFSEDQVLFDLGNAVLRS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++I+G FP+Y+ VIP      L V    L+QA+ RVSI++S + + V+++L  +   +  
Sbjct: 236 KVIEGRFPDYERVIPADLPATLTVERERLKQALARVSIVASDKYRGVRMTLGDEGCQVMT 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D  +A ES+   Y   PM+I FN  YL+++++ I +     D+V   L   NSS+ +
Sbjct: 296 HNADREEAQESVEAEYQGPPMEIGFNLGYLVDVLNAIET-----DQVRIGLRDGNSSILV 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +             A YV+MPMR+
Sbjct: 351 QAEPP---------GGARYVVMPMRL 367


>gi|71279230|ref|YP_266784.1| DNA polymerase III subunit beta [Colwellia psychrerythraea 34H]
 gi|71144970|gb|AAZ25443.1| DNA polymerase III, beta subunit [Colwellia psychrerythraea 34H]
          Length = 367

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 127/386 (32%), Positives = 210/386 (54%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  +L+ L      +ERK+T+P+  ++L + +   L + A+  E+E+       
Sbjct: 1   MKFSLNRELLLKPLLLVSGAVERKSTLPILSNILFEVSGQSLTLTATDLELEMVAYAEIQ 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G IT+ A  L DI + L + + ISF   +E    + +S G S + L + P  +FP
Sbjct: 61  NQGDDGKITIPARKLLDICKSLPESSLISFEVIDET---IKLSSGRSKYSLSTLPAVDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E +    F+L  S    L+E THF+MA +++RYYLNG+   I  E  ++ +VATDGH
Sbjct: 118 NIEEWKGDVEFQLLKSEFLRLIESTHFSMANQDVRYYLNGM--SIESEGNEIRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ ++           +IVPRK + EI+R+L+  D +V+V L  + I +     S + 
Sbjct: 176 RLAICKISNETLALPARQVIVPRKGILEIIRLLAPVDEAVQVFLGSNHIRIIDSEFSFTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L+DG FP+Y+ V+P + DK    N   LRQ + R SI+S+ + + V+L+ S   L +T 
Sbjct: 236 KLVDGRFPDYRRVLPRNGDKVFETNKDALRQVLSRASILSNEKFKGVRLNFSDTNLKITA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E + + +    ++I FN  Y+L+++  I      D+ V F L  +NSSV I
Sbjct: 296 NNPEQEQAEEEIEINFPYGELEIGFNVSYVLDVLSAIK-----DENVKFTLADANSSVVI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G          +   A YV+MPMR+
Sbjct: 351 EG---------SSNGEALYVVMPMRL 367


>gi|169632031|ref|YP_001705767.1| DNA polymerase III, beta chain [Acinetobacter baumannii SDF]
 gi|169150823|emb|CAO99423.1| DNA polymerase III, beta chain [Acinetobacter baumannii]
 gi|323516069|gb|ADX90450.1| DNA polymerase sliding clamp subunit [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 382

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +   S
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTALS 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                  G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEILASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNAPLEMSFNAQYLLDVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|297528378|ref|YP_003669653.1| DNA polymerase III subunit beta [Geobacillus sp. C56-T3]
 gi|297251630|gb|ADI25076.1| DNA polymerase III, beta subunit [Geobacillus sp. C56-T3]
          Length = 378

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M I+++R  + + +    + +  + TIP+   + L A    + +  S  +I I   IP  
Sbjct: 1   MNISIDREALAKSVQDVMKAVSTRTTIPILTGIKLTATALGVTLTGSDSDISIESFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL         ++N L     I  G S F L  
Sbjct: 61  KEGKLLVDVKRPGSIVLQARFFSEIVKKLPQQTVEIETEDNFLTI---IRSGHSEFRLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  E  +L 
Sbjct: 118 LNADEYPRLPQIEEENVFQIPADLLKTVIRQTVFAVSTSETRPILTGVNWKV--EHGELV 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +V I ++     ++++P K++ E+ +IL   +  V + ++ +++    
Sbjct: 176 CTATDSHRLAMRKVKIESENEVSYNVVIPGKSLNELSKILDDGNHPVDIVMTANQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           E L    RL+DG +P    +IP  +   + VN     QA+DR S+++   R   VKL +L
Sbjct: 236 EHLLFFSRLLDGNYPETARLIPTESKTTMIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               L ++  +P++GK  E +         ++I F+ KY+++ +  +   +     +   
Sbjct: 296 PGGMLEISSISPEIGKVTEQLQTESLEGEELNISFSAKYMMDALRALDGTD-----IQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    DS            +++P+R
Sbjct: 351 FTGAMRPFLLRPLHTDS---------MLQLILPVR 376


>gi|269124279|ref|YP_003297649.1| DNA polymerase III subunit beta [Thermomonospora curvata DSM 43183]
 gi|268309237|gb|ACY95611.1| DNA polymerase III, beta subunit [Thermomonospora curvata DSM
           43183]
          Length = 375

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 166/392 (42%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  + + +    R + ++  +PV   + L+A    L++ A   E+         
Sbjct: 1   MKFRIDRDALADAVAWTARSLPQRPPVPVLGGMHLEA-GDRLKLSAFDYEVSAQVTTDID 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ V   LL DI R L         +    G++V +  G + F L + P  ++PS
Sbjct: 60  AEEPGTVLVPGRLLADISRALPP----HPVEVTADGSKVMLRCGSAKFTLPTMPVEDYPS 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E         +       V +   A   ++    L G+   I+ E + L   +TD +R
Sbjct: 116 LPEMPPAAGSVGS-DEFAVAVNQVAIAAGKDDTIPMLTGVRVEIDGETVTL--ASTDRYR 172

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNIE 233
           LAV E+    +     +  +VP + + +  + L+S  + V+V+L       E  I  +  
Sbjct: 173 LAVRELQWKPERPDFSAAALVPARTLADTAKSLTSG-AEVEVALGGAGSTGEGMIGFSGG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+DG+F  Y++++P        V      +AV RVS+++  R   V+L+ S  
Sbjct: 232 GRRTTTRLLDGDFVKYRSLLPTEYAGMAEVQTGPFIEAVKRVSLVA-ERNTPVRLAFSQG 290

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +     D  +A+E++        ++I FN+ +LL+ +  I SD            + 
Sbjct: 291 EVVLEAGTGDEAQAVEALEATLEGEDINIAFNHGFLLDGLSQIGSDV-----ARLSFTTP 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                + GK  +         +  Y++MP+R+
Sbjct: 346 TKPAVLTGKPPEEGATP----SYRYLIMPVRL 373


>gi|261363924|ref|ZP_05976807.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996]
 gi|288567936|gb|EFC89496.1| DNA polymerase III, beta subunit [Neisseria mucosa ATCC 25996]
          Length = 367

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 117/384 (30%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++ DG  ++ A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESKDGQTKLLATDLEIQINTAGPESQA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L D A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPDSAIVSL---DWADNRLTLRAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L+    K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISAAFSLSQETFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++    + V L  +++       ++  ++
Sbjct: 179 AYAASQIEAELPKTE-VILPRKTVLELFKLLNNPSEPISVELLNNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTQLLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|171462834|ref|YP_001796947.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
 gi|171192372|gb|ACB43333.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
           subsp. necessarius STIR1]
          Length = 371

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 108/391 (27%), Positives = 209/391 (53%), Gaps = 26/391 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R ++L+ L     I+ER++T+P+  ++L +  +  +   ++  EI+IT     
Sbjct: 1   MQLVNTSRDNLLKPLQVVSGIVERRHTLPILANLLFKKIEEKVSFVSTDIEIQITTNANF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R L +G      K+    +++ +  G S F LQ+   +EF
Sbjct: 61  GVGSEDVTTTVAARKLLDILRALPEGPVFLNLKD----SKMVVQSGKSRFSLQTLSATEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P  +   E   +++++    + L+ + HF+MA ++IRYYLNG+   +  ++  + AVATD
Sbjct: 117 PVMQSVGEVTAAWKMSQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKE--VVAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA ++V++    +   +   +I+PRK + E   +L   D  +++SL+ +++  +   
Sbjct: 175 GHRLAYSQVELVEAPSGSGQKQEVIIPRKTILECQHLLEGSDEPLEISLTANQVKFSFGD 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP      L V    L+ A+ R +I+++ + + V+ SLS ++
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGQKNSLVVGRDALQSALQRAAILTTDKFKGVRFSLSPNR 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N +  +A E +   Y    ++I FN  YLL+++ N+      ++++   L  +N
Sbjct: 295 ITIQSTNAEQEEAQEEIETEYAGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDAN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  I     +S           YV+MPMRI
Sbjct: 350 SSAVITLPGSES---------FKYVVMPMRI 371


>gi|308171893|ref|YP_003918598.1| DNA polymerase III subunit beta [Bacillus amyloliquefaciens DSM 7]
 gi|307604757|emb|CBI41128.1| DNA polymerase III (beta subunit) [Bacillus amyloliquefaciens DSM
           7]
          Length = 378

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++D  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  EDDKEIVTIDQPGSIVLQARFFSEIVKKLPMATV---EIEVQNQYLTIIRFGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++  E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSASETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  +        ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CTATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDSQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIVVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             D L ++ ++P++GK +E++     +   ++I F+ KY+++ +  +   +     +   
Sbjct: 296 PADSLEISSNSPEIGKVVEAVLADQIDGEELNISFSPKYMMDALKVLEGAD-----IRIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|88607712|ref|YP_505645.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ]
 gi|88598775|gb|ABD44245.1| DNA polymerase III, beta subunit [Anaplasma phagocytophilum HZ]
          Length = 375

 Score =  319 bits (819), Expect = 3e-85,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 205/387 (52%), Gaps = 26/387 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
            ++ R D+L+ L +   +IER+N+I V   V ++A   ++E  ++  +I I   + A+V 
Sbjct: 11  FSISREDLLQALNYVSSVIERRNSIAVLSCVRIEAKGSVIEFTSTDLDISIEACVQANVA 70

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G    SA LLYDIVRKL   A + F   +    ++ ++ G++ FYL      +FP  +
Sbjct: 71  TGGVAVASAQLLYDIVRKLSGEADVRFKLND---GKLLVACGNARFYLHVISPEKFPDIE 127

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                  F++ ++ L  L+ +T F+M+ EE RY L G++FH+++E   LC VATDGHRL+
Sbjct: 128 GSSLDCGFDIPATSLAELLNKTKFSMSVEESRYNLRGVYFHVDDE--MLCCVATDGHRLS 185

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMS 238
           +A++     +    ++I+PRK V E+L+I+          V V +S  +I    +   M 
Sbjct: 186 LAKISKPEGLHSGIAVIIPRKTVNEVLKIIGHGGGDAAQMVSVGISNRKICFRYKGYFMV 245

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +++DG FP+Y  +IP      + ++ + L+ AVDRVS++   +++A+KLS +  KL ++
Sbjct: 246 SKVLDGTFPDYAAIIPTECGNSVSIDASVLQSAVDRVSVVVFDKVKAIKLSFTEGKLVLS 305

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + D G A E ++V Y    + I  N +YL+E++ +I                 +++V 
Sbjct: 306 SASSDQGDASEELSVDYEGDEVVIGLNARYLMEVLGSIKGV------CEIVFSDGSAAVL 359

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  +              +++MPMRI
Sbjct: 360 VKDGEYG-----------MHIVMPMRI 375


>gi|50083299|ref|YP_044809.1| DNA polymerase III beta [Acinetobacter sp. ADP1]
 gi|49529275|emb|CAG66987.1| DNA polymerase III, beta chain [Acinetobacter sp. ADP1]
          Length = 382

 Score =  319 bits (819), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 206/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  +V +QAN   L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQANAQALTITGSDLEVELVASTTLA 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L DI + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACIEAGETTVPARKLVDICKSLPSAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I++  L+  AV T
Sbjct: 119 YPLLTTESSQGTQVQVTQRELKRLFEKTSFAMAVQDVRFYLTGTLLEIDQNQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--- 233
           DGHRLA+ EV   +   +    IVPRKAVGE+ R+LS +D  + + +    +++ I    
Sbjct: 177 DGHRLALCEVQASSTAMQAVQAIVPRKAVGELQRLLSIEDDQLSLLIGRELLNVTINIAN 236

Query: 234 --------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                   ++  + +LIDG+FP+Y+ VIP   DK +++     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQHPITVRFTTKLIDGKFPDYRRVIPRGGDKHVQIAHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y +  +++ FN +YLL+++  +       D+
Sbjct: 297 VFLNFNPDVLQLRANNPEQDEAIEDIAIQYQDASLEMSFNAQYLLDVLSVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VSMSMTEANQSVLVQDA---------AHPDQTYVVMPMRV 382


>gi|331270705|ref|YP_004397197.1| DNA polymerase III subunit beta [Clostridium botulinum BKT015925]
 gi|329127255|gb|AEB77200.1| DNA polymerase III, beta subunit [Clostridium botulinum BKT015925]
          Length = 367

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 185/386 (47%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + L A +  L +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNELTLIGSDIDLSIETKIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI V + +  +I+RKL + +      EN     + I    S F L      EFP+
Sbjct: 61  VQEEGSIVVDSKIFGEIIRKLPNSSIHINTTEN---NSIEIVCEKSKFDLIHMDAEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +   VLKN+++ T FA+A +E R  L GI F + ++  +L  VA DG+R
Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDK--RLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    I  +     S ++P K   E+ +ILS  + +V ++ + + I  N+    +  R
Sbjct: 176 LALRSNLIDNE--NTISAVIPGKTFNEVSKILSEDEKNVNITFTPNHILFNLGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP     ++      L   ++R S+M        VK  + +D L +T 
Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVNAKRAELLNCIERASLMGKDGNTNLVKFDIKNDNLVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G+  E +N+      + I FN KYL++++  +      DDE+V   DSS S   I
Sbjct: 294 -NSQLGRVREELNIILQGDELQIAFNSKYLIDVLKILE-----DDEIVMEFDSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K+ ++           Y+++P+R+
Sbjct: 348 KSKENNT---------YTYLVLPVRL 364


>gi|15836607|ref|NP_297295.1| DNA polymerase III subunit beta [Xylella fastidiosa 9a5c]
 gi|9104762|gb|AAF82815.1|AE003855_2 DNA polymerase III, beta chain [Xylella fastidiosa 9a5c]
          Length = 366

 Score =  319 bits (818), Expect = 4e-85,   Method: Composition-based stats.
 Identities = 121/385 (31%), Positives = 209/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+       
Sbjct: 1   MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS
Sbjct: 61  DAESGEITIPARKIYEIVRALPDSSQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +   +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHR
Sbjct: 118 IDKIEVTERIIIPEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +
Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ + ++       D V  +L  SNSS  IR
Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + N   +  V+MP+R+
Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366


>gi|28197947|ref|NP_778261.1| DNA polymerase III subunit beta [Xylella fastidiosa Temecula1]
 gi|182680574|ref|YP_001828734.1| DNA polymerase III subunit beta [Xylella fastidiosa M23]
 gi|28056007|gb|AAO27910.1| DNA polymerase III beta chain [Xylella fastidiosa Temecula1]
 gi|182630684|gb|ACB91460.1| DNA polymerase III, beta subunit [Xylella fastidiosa M23]
 gi|307579028|gb|ADN62997.1| DNA polymerase III subunit beta [Xylella fastidiosa subsp.
           fastidiosa GB514]
          Length = 366

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+       
Sbjct: 1   MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS
Sbjct: 61  DPESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHR
Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +
Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ + ++       D V  +L  SNSS  IR
Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + N   +  V+MP+R+
Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366


>gi|225873788|ref|YP_002755247.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC
           51196]
 gi|225791219|gb|ACO31309.1| DNA polymerase III, beta subunit [Acidobacterium capsulatum ATCC
           51196]
          Length = 373

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 191/388 (49%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I+V R D+L  L  +  ++ERK TIP+  + L++A++  L I A+  +  +  +  A 
Sbjct: 1   MEISVSRQDLLRELTASQSVVERKTTIPILSNFLIEADEDRLAITATDLDQSMRTSCAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T+ A  LYD V+ L +G       +N     V I  G SN  +     + FP 
Sbjct: 61  VKKPGSCTIPARKLYDYVKLLPEGDVSIKLMDNH---WVQIRSGRSNTKMVGMARANFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +  + L+NL+ +T FA++ EE RY LNG    +  E   +  VATDGHR
Sbjct: 118 VPEFPSTGAIAIPVASLRNLIAKTIFAISNEESRYTLNGALLILKAES--IAMVATDGHR 175

Query: 181 LAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
           LA  E        +      ++PRKA+ E+  +L + D  SV+ +  +S +   I    +
Sbjct: 176 LAHIEKSGENFPSMGAEKKTLIPRKALSELQSLLGNTDAESVEFADDDSTLFFRIGHRVL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + R + G+FPNY+ V+P  N+K   V   +L +++   S  +  R  A+K+ L  ++L +
Sbjct: 236 TSRKLTGQFPNYEAVLPRDNNKFAIVRSEDLSRSIQLTSQFADERSGAIKIRLEQNELKI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D G++ + +   Y+  P+ + FN  YLL+ +  I +      EV      + S+ 
Sbjct: 296 SASSTDSGESEDVIETPYSFDPLVVGFNSAYLLDFLKAIGN----TGEVRLEFKDAQSAG 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R +D              Y++MPMRI
Sbjct: 352 QMRPEDG------QEDYKYRYIIMPMRI 373


>gi|149182289|ref|ZP_01860768.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
 gi|148849981|gb|EDL64152.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
          Length = 378

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 184/395 (46%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R D+++ +G   + +  + TIP+   + + AN+  + +  S  +I I   IP  
Sbjct: 1   MKFVIQRDDLVQSVGDVMKAVTSRTTIPILTGIKIIANEEGVTLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   G I + A    +IV+KL          E +   +  I  G + F L  
Sbjct: 61  EEGNEIVEVLETGGIVLQAKFFSEIVKKLPMDTV---EIEVQNHLQTVIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E   + ++ + +LK ++ +T FA++T E R  L G+ + +  E+ +L 
Sbjct: 118 LDPEEYPHLPQIEEGNALKVPTDLLKTMIRQTVFAVSTSETRPILTGVNWKV--ENGELN 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  +     K  +I++P K++ E+ +IL      V++ ++++++    
Sbjct: 176 CIATDSHRLAMRKAPLENDNGKEYNIVIPGKSLTELSKILDDNSELVEIVITDNQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL++G +P+   +IP  +  EL +      QA+DR S+++   R   VKL ++
Sbjct: 236 KHLMFFSRLLEGNYPDTSRLIPNESKTELTLTTKEFLQAIDRASLLAREGRNNVVKLSTI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++GK IE +         + I F+ KY+++ +  +        E+   
Sbjct: 296 EQGFVEISSNTPEIGKVIEEVQSQSIEGEELKISFSAKYMMDALKALEGT-----EIHIN 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     I+    DS            +++P+R
Sbjct: 351 FTGAMRPFVIKPLHDDSI---------LQLILPVR 376


>gi|226309589|ref|YP_002769483.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599]
 gi|226092537|dbj|BAH40979.1| DNA polymerase III beta subunit [Brevibacillus brevis NBRC 100599]
          Length = 379

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 189/396 (47%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M ITV+R  +   + H  + +  + TIP+   + ++ +D  L + AS  ++ I   IP  
Sbjct: 1   MHITVQREKLSNAVSHVSKAVSSRTTIPILTGIKIKTDDEGLTLTASDSDVSIEVQIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +V   GSI ++A +  +IVRKL    +I    ++ L T+  I  G + F +  
Sbjct: 61  EAGEWGVTVHQPGSIVLTARIFSEIVRKLPSN-EIDIQVDDRLATK--IRSGQAEFTING 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P     E    F +   +LK ++ +T F ++T E+R  L G+ + +  +  KL 
Sbjct: 118 MDANEYPQLPHLEEDKVFSVPCDLLKAMIRQTVFGVSTSEMRPILTGLMWSL--DQGKLR 175

Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +   +     +++VP K+  E+++IL    +   + +++++I + 
Sbjct: 176 FVATDSHRLASRTAMVECPEDLSFHNVVVPGKSCNELVKILDDDQNLADIVVADNQILVK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + +    RL++G +P+   +IP  +  E+ V+     Q+++R S++S   +   VKL +
Sbjct: 236 SKHILFYSRLLEGTYPDTTRIIPQGSKTEITVSTKEFLQSIERASLLSREGKSNVVKLVT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +    + +T + P++GK  + +     N   + I FN KY+++ +  I S      E+  
Sbjct: 296 MPDGTVEITSNAPEIGKVTDILMPKAMNGEELKISFNAKYMIDALRAIDSA-----EIKA 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S   IR  D D            ++++P+R
Sbjct: 351 SFSGPMSPFVIRPTDHDW---------MLHLILPVR 377


>gi|293611383|ref|ZP_06693679.1| DNA polymerase III [Acinetobacter sp. SH024]
 gi|292826255|gb|EFF84624.1| DNA polymerase III [Acinetobacter sp. SH024]
          Length = 382

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 115/400 (28%), Positives = 207/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + ++    +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLL+++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLDVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VNMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|261378192|ref|ZP_05982765.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685]
 gi|269145661|gb|EEZ72079.1| DNA polymerase III, beta subunit [Neisseria cinerea ATCC 14685]
          Length = 367

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 199/384 (51%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++  DG   + A+  EI+I  + P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRDGQTRLLATDLEIQIDTSGPECSA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   +N     + +  G S F LQ+ P  +FP   
Sbjct: 64  ADFRITTNAKKFQDILRALPAGALVSLDWDN---NRLTLKAGKSRFALQTLPAEDFPQMN 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E V + FEL     K+++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 IGEDVSAVFELEQEAFKSMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + +   +I+PRK V E+ ++L++    ++V L + ++       ++  ++
Sbjct: 179 AYSACAIDADLPRTE-VILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++R SI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRVELLGALERASILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D+V      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGSGLEVGFNIGYLMDVLRNIHS-----DDVQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|116332683|ref|YP_794210.1| DNA polymerase sliding clamp subunit [Lactobacillus brevis ATCC
           367]
 gi|116098030|gb|ABJ63179.1| DNA polymerase III, beta subunit [Lactobacillus brevis ATCC 367]
          Length = 379

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 98/395 (24%), Positives = 183/395 (46%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  ++ L +  R I  K TIP+   + + A+D  L +  S  +I I   I A 
Sbjct: 1   MKFTINRAAFIKELNNVSRAISSKTTIPILTGLKIVASDAGLLLTGSNADISIETLIRAD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +D  GSI ++A    +IV++L +        E + G +  I+ G + F +   
Sbjct: 61  NPDVGLTIDEPGSIVLTARFFSEIVKRLPEKE---MTVEVKDGFQTEITSGAAAFNINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   S  L+ +V K L+ +T  A++ +E R  L GI F +   D +  A
Sbjct: 118 DANNYPHLPEIDAADSIVLSGAVFKELISQTVIAVSNQESRPILTGIHFVL--NDNQFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  ++++         +I+P K++ E+ R++   D+ VK+  SE+++   + 
Sbjct: 176 VATDSHRLSQRQIELSTPSEASFDVIIPGKSLTELSRMIGDDDADVKMQFSENQVLFLLG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
             S   RL++G +P+   +IP  +   +      L  AV+R S++S   R   VKL+L+ 
Sbjct: 236 DTSFYSRLLEGNYPDTSRLIPKESSTTVEFEAPELLAAVERASLLSHESRNNVVKLTLTP 295

Query: 293 D--KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              ++ +  ++PD+G   E +        P++I FN  Y+ + + +          +   
Sbjct: 296 TDHQVTIFSNSPDVGNVEEELAPKEIGGEPLEISFNPDYMKDALHSFGQAT-----IRVA 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S+     +   +  S        N   ++ P+R
Sbjct: 351 FTSALRPFTLVPTEDTS--------NFIQLITPVR 377


>gi|205371911|ref|ZP_03224731.1| DNA polymerase III subunit beta [Bacillus coahuilensis m4-4]
          Length = 378

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 187/395 (47%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++R ++++ +    + +  + TIP+   + + AN+  + +  S  +I I   IP  
Sbjct: 1   MKFTIQRDNLVQSIQDVMKAVSSRTTIPILTGIKMIANEEGVTLTGSDSDISIESYIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   G + + A    +IV+KL          E     +  I  G + F L  
Sbjct: 61  EEDQQIVDVQQSGGVVLQAKFFSEIVKKLPLDTV---EIEVMGQYQTVIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P     E    F++ + +LK L+ +T FA++T E R  L G+ + +  ++  L 
Sbjct: 118 LDPAEYPHLPTIEEENVFKVPTDLLKTLIRQTVFAVSTSETRPILTGVNWKVEHDE--LN 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  I        ++++P K++ E+ +IL   +  V++ ++E+++    
Sbjct: 176 CIATDSHRLAMRKAKIELGSDASYNVVIPGKSLNELSKILDDNNELVEIVITENQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL++G +P+   +IP     EL +   +  QA+DR S+++   R   VKL +L
Sbjct: 236 KHLLFFSRLLEGNYPDTSRLIPTEKKTELELVTKDFLQAIDRASLLAREGRNNVVKLSTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +  + ++ ++P++GK +E + +       + I F+ KY+++ +  +        E+  +
Sbjct: 296 EAGSIEVSSNSPEIGKVVEEIQSGKVEGEELKISFSAKYMMDALKVLEG-----PEISVQ 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + D+            +++P+R
Sbjct: 351 FTGAMRPFVIRPVNDDTI---------LQLILPVR 376


>gi|15826867|ref|NP_301130.1| DNA polymerase III subunit beta [Mycobacterium leprae TN]
 gi|221229345|ref|YP_002502761.1| DNA polymerase III subunit beta [Mycobacterium leprae Br4923]
 gi|1169395|sp|P46387|DPO3B_MYCLE RecName: Full=DNA polymerase III subunit beta
 gi|886326|gb|AAB53142.1| DNA polymerase III beta subunit [Mycobacterium leprae]
 gi|1262353|emb|CAA94709.1| DnaN [Mycobacterium leprae]
 gi|13092414|emb|CAC29510.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae]
 gi|219932452|emb|CAR70095.1| putative DNA polymerase III, [beta] subunit [Mycobacterium leprae
           Br4923]
          Length = 399

 Score =  319 bits (818), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 164/398 (41%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R      +    + +  + T+PV   VLL  +D  L I     E+     + A +
Sbjct: 14  KFCLARESFASAVSWVAKYLPTRPTVPVLSGVLLTGSDSGLTISGFDYEVSAEVQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DI R L +     +      G  V ++ G + F L +    ++P+ 
Sbjct: 74  ASSGSVLVSGRLLSDITRALPNKPVHFYVD----GNRVALTCGSARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L S V    + +   A   +     L GI   I+ + + L   ATD  RL
Sbjct: 130 PTLPDE-TGTLPSDVFAEAIGQVAIAAGRDYTLPMLTGIRIEISGDTVVL--AATDRFRL 186

Query: 182 AVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+           S++VP K + E+ +  +     V +SL        +    ++  
Sbjct: 187 AVRELKWSVLSSDFEASVLVPAKTLVEVAKAGTDGSG-VCLSLGAGVGVGKDGLFGISGG 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++     
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVATIDVAELTEAIKLVALVA-DRGAQVRMEFGDG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 ILRLSAGADDVGRAEEDLAVAFTGEPLTIAFNPNYLTDGLASVHS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
           +    +R    D  +   +        +  Y+LMP+R+
Sbjct: 360 SKPALLRPTSNDDVHPTHDGPFPALPTDYVYLLMPVRL 397


>gi|331693901|ref|YP_004330140.1| DNA polymerase III subunit beta [Pseudonocardia dioxanivorans
           CB1190]
 gi|326948590|gb|AEA22287.1| DNA polymerase III, beta subunit [Pseudonocardia dioxanivorans
           CB1190]
          Length = 376

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 163/391 (41%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG----LLEIKASGPEIEITGA 56
           MK  VER  + +      R +  +  +PV   VL++         L +     E      
Sbjct: 1   MKFRVERDVLADAAAWVARSLPARPPVPVLGGVLIEGGGDPGAETLTVSGFDYETSARVE 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           + A+V   G + VS  LL DI R L              G+   I+ G+S F L + P  
Sbjct: 61  LDATVGDPGQVLVSGRLLADITRALPSKPVDLVVD----GSRATINCGNSRFSLPTMPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P         +  +A+ VL + V +   A   ++    L G+   I  E  +L   AT
Sbjct: 117 DYPQLPAMPQ-RAGSVAADVLASAVAQVAVAAGRDDTLPMLTGVRLEI--EGSRLTLAAT 173

Query: 177 DGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES 234
           D  RLAV E+D   +      ++++P + + ++ + LS   +  + +S  +  + +    
Sbjct: 174 DRFRLAVRELDWEPEDPSASTAVLIPARTLADVAKALSGSGTVEIALSAGDGMLGMTGSG 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ +IP  +     +    L +A+ RV++++  R+  ++L    D 
Sbjct: 234 RRATTRLLDAEFPRFRQLIPAESTTNAEIEVATLVEAIKRVALVA-DRVAQIRLEFGEDG 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     D+G A E +       P+ I FN  YLL+ +  + +     + V     + N
Sbjct: 293 LRLAAGGDDVGSAEEEIPCALQGEPLTIAFNPSYLLDALGALHT-----ERVQLSFTTPN 347

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                R    D   N        ++LMP+R+
Sbjct: 348 RPALARPVVADDAANP----GYLHLLMPVRL 374


>gi|56751505|ref|YP_172206.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 6301]
 gi|81298812|ref|YP_399020.1| DNA polymerase III subunit beta [Synechococcus elongatus PCC 7942]
 gi|56686464|dbj|BAD79686.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 6301]
 gi|81167693|gb|ABB56033.1| DNA polymerase III, beta subunit [Synechococcus elongatus PCC 7942]
          Length = 390

 Score =  319 bits (817), Expect = 5e-85,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 194/392 (49%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  +   PV  +VLL A+ G   L + A    + I  +  
Sbjct: 16  MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 75

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V+  G+IT+ A LL DIV +L + + ++    +   T   +S G   + ++     EF
Sbjct: 76  AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 132

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   + +L++S L   +  T FA + +E +  L G+   +  + L+    ATDG
Sbjct: 133 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEF--AATDG 190

Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235
           HRLAV + +   A  A   ++ VP +A+ ++ R+++    D ++ +   + +        
Sbjct: 191 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 250

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293
            ++ R +DG++PNY  +IP   ++ + V+   L  A++R+++++  +  A++LSL   ++
Sbjct: 251 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 310

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L + VD  D+G   E++       P++I FN +YL E +  +++ +     +  +L+S+
Sbjct: 311 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTD-----IQIQLNSN 365

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S V +              V   Y++MP+++
Sbjct: 366 TSPVVLSPLGP---------VKITYLVMPIQL 388



 Score = 39.8 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 32/184 (17%), Positives = 66/184 (35%), Gaps = 14/184 (7%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV- 183
                     + L   +     A+ +      L  +    +    +L   A D   L++ 
Sbjct: 13  PPPMKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFD---LSLG 69

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            +    AQ+ +  +I +P K + +I+  L + DS V +  +++   L++ S    +R I 
Sbjct: 70  IQTSFAAQVERSGAITLPAKLLNDIVSRLPN-DSDVTLEDNDAAATLSVGSGQYQMRGIS 128

Query: 244 G-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCM 297
             EFP    V        L+++ + L + +      +S          V L +  D L  
Sbjct: 129 ADEFPELPLVQSQEA---LQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEF 185

Query: 298 TVDN 301
              +
Sbjct: 186 AATD 189


>gi|168187276|ref|ZP_02621911.1| DNA polymerase III, beta subunit [Clostridium botulinum C str.
           Eklund]
 gi|169294798|gb|EDS76931.1| DNA polymerase III, beta subunit [Clostridium botulinum C str.
           Eklund]
          Length = 367

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 188/386 (48%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + L A +  + +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHLSAKNNEITLIGSDIDLSIETKIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+I V + +  +I+RKL + +      EN     + I    S F L      EFPS
Sbjct: 61  VEEEGTIVVDSKIFGEIIRKLPNSSVRINTTEN---NSIEIFCEKSKFDLIHMDADEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +   VLKN+++ T FA+A +E R  L GI F + +E  KL  VA DG+R
Sbjct: 118 LPKINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDE--KLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +     S ++P K   E+ +ILS  + SV ++ + + I  N+    +  R
Sbjct: 176 LALRSNEINNE--NTISAVIPGKTFSEVSKILSEDEKSVNITFTPNHILFNLGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP     ++    + L   ++R S+M        VK  +  D L +T 
Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVTAKRSELLNCIERASLMGKDGNTNLVKFDIKDDNLVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E +N+      + I FN KYL++++  +      D+E++   DSS S   I
Sbjct: 294 -NSQLGKVREELNIILQGGELQIAFNSKYLIDVLKILE-----DEEIIMEFDSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + KD+ +           Y+++P+R+
Sbjct: 348 KSKDEKT---------YTYLVLPVRL 364


>gi|220910785|ref|YP_002486094.1| DNA polymerase III subunit beta [Arthrobacter chlorophenolicus A6]
 gi|219857663|gb|ACL38005.1| DNA polymerase III, beta subunit [Arthrobacter chlorophenolicus A6]
          Length = 374

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 171/388 (44%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R  + E +    R +  +  +PV   +LL+A  G + + +   E      I A 
Sbjct: 1   MKFRVDRDVLAEAVTWTARSLSPRPPVPVLSGLLLKAEAGTVSLSSFDYETSARLEITAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I VS  LL DI R L              G +V ++   S+F+L + PE+E+P 
Sbjct: 61  IRDEGTILVSGRLLADICRSLPSAP----VDVETDGNKVTLTCRRSSFHLATMPEAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S  +        V +   A + ++    L G+   I ++ + L  +ATD +R
Sbjct: 117 LPALP-AISGTVPGDAFAQAVSQVIIAASKDDTLPILTGVRMEIEDDLITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESR-IHLNIESLSM 237
           LA+ EV           S +V  K + E+ + L +S D S+ +S  ++R I       + 
Sbjct: 174 LAMREVPWKPVTPGVSTSALVKAKTLNEVAKTLGNSGDISLALSDDDTRLIGFESGGRTT 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DG++P  +++ P S      V    L +AV RVS+++  R   V+L+ ++  L +
Sbjct: 234 TSLLVDGDYPKIRSLFPESTPIHATVQTQELVEAVRRVSLVA-ERNTPVRLAFTAGLLNL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E +    +   + + FN  YL+E +  I +       V F   S+    
Sbjct: 293 DAGTGEDAQASEELEAQLSGDDITVAFNPHYLVEGLSVIETK-----FVRFSFTSAPKPA 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  +      ++D   +  Y++MP+R+
Sbjct: 348 MITAQADADGEDQD---DYRYLVMPVRL 372


>gi|317120851|ref|YP_004100854.1| DNA polymerase III subunit beta [Thermaerobacter marianensis DSM
           12885]
 gi|315590831|gb|ADU50127.1| DNA polymerase III, beta subunit [Thermaerobacter marianensis DSM
           12885]
          Length = 369

 Score =  319 bits (817), Expect = 6e-85,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 190/389 (48%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +++SD+   L  A R +  ++T+PV   +LL A    L + A+  E+ +    PA 
Sbjct: 1   MRLVIDQSDLHAALQVAIRGVATRSTLPVLSGILLVAEPEQLRLVATDMEMTVEVLAPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +    L +IVR+L  G      +    G    I    S F +       FP+
Sbjct: 61  VQEEGSVVLPGRHLVEIVRRLPPGEVHLEVE----GFRARILQERSRFTIHGTDPGIFPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +    + +L+N++ RT FA++T+E R  L G+ F    +  +L AVATDG R
Sbjct: 117 MPHISAGSTVLFDNGLLRNVLRRTTFAVSTDEGRPILTGVSFRAEGD--RLQAVATDGFR 174

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A   V +   +   P + ++P +++ E+ R+L  +    ++ L E++    +  + +  
Sbjct: 175 IAACSVTLERPVEGQPVAAVIPGRSLAEVARLLPDQ-GIGRLLLDETQAGFQLGEVRLIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA---VKLSLSSDKLC 296
           RL+DG +P+   ++P      +++     ++A +R ++++  R  A   ++L++   +L 
Sbjct: 234 RLVDGVYPDVLGLVPSEYPTRVQLPTRAFQEACERAALLADTRQPARWVIRLAVEPGRLV 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  +P++G+A E +    +   M I FN +YL++ +  I +     +EV+F L     +
Sbjct: 294 ITASDPELGEAREEIPAQVDGEGMVIGFNARYLVDGLKAIDT-----EEVLFELTEPLKA 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +RG   D         +  Y+++P++I
Sbjct: 349 SRLRGVGAD---------DFTYIVLPVKI 368


>gi|329118145|ref|ZP_08246857.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
 gi|327465805|gb|EGF12078.1| DNA-directed DNA polymerase III beta subunit [Neisseria
           bacilliformis ATCC BAA-1200]
          Length = 367

 Score =  319 bits (817), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 195/384 (50%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VL++   G   I A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLIENTHGQTNILATDLEIQINTAGPDSEA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A  L DI+R L +GA ++    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKLQDILRALPEGALVAL---DWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E + S F L    LK ++ +  ++MA ++IRYYLNG+        L+L  VATDGHRL
Sbjct: 121 VGEEIGSAFSLPQDTLKTMLAQVQYSMAVQDIRYYLNGLLMQTEGGQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + K   +I+PRK V E+ ++L+  D  V V L E+++        +  ++
Sbjct: 179 AYSAAAIEADLPK-AEVILPRKTVLELFKLLNRPDEQVSVELLENQVRFRCNGSVIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG+FP+Y  VIP  NDK   +N      A++R +I+++ + +  +L L    L +   N
Sbjct: 238 VDGKFPDYNRVIPLDNDKIFLLNRAAFLGALERAAILANEKFRGARLHLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    ++  FN  YL++++ NI +     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEAGFNINYLMDVLRNIHA-----DDIQLAFGDANRSTLFTI 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  +  Y++MPMRI
Sbjct: 353 P---------NNPDFKYIVMPMRI 367


>gi|313669120|ref|YP_004049404.1| DNA polymerase III, beta subunit [Neisseria lactamica ST-640]
 gi|309379507|emb|CBX21873.1| unnamed protein product [Neisseria lactamica Y92-1009]
 gi|313006582|emb|CBN88047.1| putative DNA polymerase III, beta subunit [Neisseria lactamica
           020-06]
          Length = 367

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 197/384 (51%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  + P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPECGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++     + +  G S F LQ+ P  +FP   
Sbjct: 64  ADFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPADDFPQIN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E V  +FEL     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 IGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + +   +I+PRK V E+ ++L++    ++V L + ++       ++  ++
Sbjct: 179 AYSACAIDADLPR-AELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++R +I+++ +I+  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    ++  FN  YL++++ NI +     D++      +N       
Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHT-----DDMQLAFGDANRPTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D           N  YV+MPMRI
Sbjct: 353 PDNP---------NFKYVVMPMRI 367


>gi|170077879|ref|YP_001734517.1| DNA polymerase III subunit beta [Synechococcus sp. PCC 7002]
 gi|169885548|gb|ACA99261.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7002]
          Length = 394

 Score =  318 bits (816), Expect = 7e-85,   Method: Composition-based stats.
 Identities = 90/408 (22%), Positives = 183/408 (44%), Gaps = 39/408 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           MK    +SD+   L    R +  + T P+  +VLL A+     +++ A    + I  + P
Sbjct: 1   MKFVCSQSDLNSQLSLVGRAVPSRPTHPILGNVLLTADANRHQIQLTAFDLSLGIRTSFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPE 115
           A V   G++T+ A LL DIV +L +G        + L     +  ++     F ++    
Sbjct: 61  AQVIEGGTLTLPAKLLNDIVSRLPEGEVTLSCPSDTLMKGDAQATLTAATGRFQIRGMGA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     +      L +  L   +    FA + +E +  L G+    +++ L+    A
Sbjct: 121 EEFPELPTIQDGKKLMLPAIALSEGLGGVLFAASPDETKQVLTGVHLTHHQDCLEF--AA 178

Query: 176 TDGHRLAVAEV--------------DIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SV 219
           TDGHRLA+ E                +     +  ++ +P +A+ E+ R+L++ +    +
Sbjct: 179 TDGHRLALVETSDQVSPEPESSETGKLPTSTLEDFALTIPARALRELERMLTTANEADLI 238

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            + L +S++   +    ++ R +DG +P Y  +IP    +++ +    L  +++RV++++
Sbjct: 239 ALHLDDSQVIFEVNHQHLTSRKLDGAYPAYHQLIPRQFSRDVTLERRALISSIERVAVLA 298

Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
             +   VK  L+    KL + V+  D+G   E++    +   ++I FN +YL++ +  + 
Sbjct: 299 DQKNNIVKFRLNSAEQKLHLAVEAQDVGSGEEALPAQVSGTDLEIAFNVRYLIDGLKALP 358

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S+     E+  +L+ +N  V                V   Y++MP++I
Sbjct: 359 SN-----EIKMQLNENNQPVIFTP---------LGAVQMTYLIMPVQI 392


>gi|182437494|ref|YP_001825213.1| DNA polymerase III subunit beta [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|239942669|ref|ZP_04694606.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|239989128|ref|ZP_04709792.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           11379]
 gi|291446130|ref|ZP_06585520.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|326778149|ref|ZP_08237414.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|178466010|dbj|BAG20530.1| putative DNA polymerase III beta subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
 gi|291349077|gb|EFE75981.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|326658482|gb|EGE43328.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 376

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 167/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  IDEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     + A   ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENADASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374


>gi|319651100|ref|ZP_08005234.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2]
 gi|317397270|gb|EFV77974.1| DNA polymerase III subunit beta [Bacillus sp. 2_A_57_CT2]
          Length = 378

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 187/395 (47%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+  ++R  +++ +    + +  + TIP+   + + A++  + +  S  +I I   IP  
Sbjct: 1   MRFIIQRDRLVQSVQDVMKAVTSRTTIPILTGIKIVASEEGVTLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   G+I + A    +IV+KL     +    EN L T   I  G S F L  
Sbjct: 61  EAGDEIVEIKQAGAIVLQAKFFSEIVKKLPTDT-VEISVENHLQT--VIRSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK +V +T FA++T E R  L G+ + +  E+  L 
Sbjct: 118 LDAEEYPHLPQIEEENVFKIPTDLLKAMVRQTVFAVSTSETRPILTGVNWKV--ENGTLT 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  I    ++  ++++P K++ E+ +IL   +  + + ++E+++    
Sbjct: 176 CIATDSHRLALRKAQIETNASESYNVVIPGKSLSELSKILDDNNDLIDIVITENQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           E L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL ++
Sbjct: 236 EHLLFFSRLLEGNYPDTSRLIPSDSKTDVIVNTKEFLQAIDRASLLAKEGRNNVVKLSTI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++GK +E +         + I F+ K++++ +  +        E+   
Sbjct: 296 DGGVIEISSNTPEIGKVVEEVQSKSIEGEELKISFSAKFMMDALKALEGS-----EITIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     I+  + +S            +++P+R
Sbjct: 351 FTGAMRPFIIKPLNDESI---------LQLILPVR 376


>gi|260435668|ref|ZP_05789638.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109]
 gi|260413542|gb|EEX06838.1| DNA polymerase III, beta subunit [Synechococcus sp. WH 8109]
          Length = 385

 Score =  318 bits (816), Expect = 8e-85,   Method: Composition-based stats.
 Identities = 91/399 (22%), Positives = 184/399 (46%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+     L +      + I  ++ 
Sbjct: 1   MKVVCSQSELNSALQLVSRAVATRPTHPVLANVLLTADAGSNRLSLTGFDLSLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + ++   ++  G +V ++    ++ ++     ++
Sbjct: 61  ASVETSGAITLPARLLGEIVSRLSSDSPVTLAVDD-SGEQVQLTSLSGSYQMRGMSADDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L    L   ++ T FA + +E +  L G+    N+  L+  A ATDG
Sbjct: 120 PDLPMVESGMTLKLQPERLVQALKGTLFASSADEAKQLLTGVHLKFNQRALE--AAATDG 177

Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLAV  V+          +   +  ++ +P +++ E+ R+++S   D  V +     ++
Sbjct: 178 HRLAVLNVEDALQDVAVTDSAEDESFAVTLPSRSLREVERLMASWRSDEPVSLFCDRGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            L      ++ R ++G +PNY  +IP    +   ++   L  A++R+++++      VK 
Sbjct: 238 VLLAADQMVTSRTLEGTYPNYGQLIPDGFTRTFGMDRRALIAALERIAVLADQHNNVVKF 297

Query: 289 SL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S       + ++ D  D+G   ES+        M I FN +YLL+ +  + S     D +
Sbjct: 298 SSQPEDGVVQISADAQDVGSGSESLPSNLEGDAMQIAFNVRYLLDGLKAMGS-----DRI 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   ++  +   +R ++              Y++MP++I
Sbjct: 353 VLHCNAPTTPAVLRSEEASEA--------FTYLVMPVQI 383


>gi|311032257|ref|ZP_07710347.1| DNA polymerase III subunit beta [Bacillus sp. m3-13]
          Length = 378

 Score =  318 bits (816), Expect = 9e-85,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  +++ +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MKFIIQRDKLVQSVQDVLKAVSSRTTIPILTGIKIVATEEGVTLTGSDSDISIESFIPCE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GS+ + A    +I++KL          E +      I  G S F L  
Sbjct: 61  EDGSENVEVKTAGSVVLQARFFSEIIKKLPMDTV---EIEVQNQYVTTIRSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E    F + + +LKN++ +T FA++T E R  L G+ + +  E+ +L 
Sbjct: 118 QDAAEYPHLPQVEEQNVFRVPTDLLKNIIRQTVFAVSTSETRPILTGVNWKL--ENHELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  + A+     ++++P K++ E+ +IL   +  + + ++E+++    
Sbjct: 176 CIATDSHRLALRKAKVEAENDITCNVVIPGKSLNELNKILDDTNELLDIVVTENQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           +++    RL+DG +P+   +IP  +  ++ V      QA+DR S+++   R   VKL +L
Sbjct: 236 KNILFFSRLLDGNYPDTSRLIPAESKTDITVTTKEFLQAIDRASLLAREGRNNVVKLATL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            SD L ++ ++P++GK +E +     +   + I F+ KY+++ +  +  +     E++  
Sbjct: 296 ESDTLEVSSNSPEVGKVVEQVQSNSIDGEELKISFSAKYMMDALKALEGN-----EILIN 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     I+    DS            +++P+R
Sbjct: 351 FTGAMRPFVIKTLHDDS---------MLQLILPVR 376


>gi|311070649|ref|YP_003975572.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942]
 gi|310871166|gb|ADP34641.1| DNA polymerase III subunit beta [Bacillus atrophaeus 1942]
          Length = 378

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 190/395 (48%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+++  ++E +    + +  + TIP+   + + A+D  +    S  +I I   IP  
Sbjct: 1   MKFTIQKDRLVESVQDVLKAVSSRTTIPILTGIKIVASDEGVSFTGSDSDISIESFIPKE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL          E +      I  G + F L  
Sbjct: 61  EGDKEIITIEQPGSIVLQARFFSEIVKKLPMSTV---EIEVQNQYLTIIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E  ++ ++ + +LKNL+ +T FA++T E R  L G+ + +  E+ +L 
Sbjct: 118 LDADEYPHLPQIEEHHAIQIPTDLLKNLIRQTVFAVSTSETRPILTGVNWKV--ENGELL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  +        ++++P K++ E+ +IL      V + ++E+++    
Sbjct: 176 CIATDSHRLALRKAKLDIPEDSSYNVVIPGKSLTELSKILDDNQELVDIVITETQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++    RL+DG +P+  ++IP  +  E+ VN     QA+DR S+++   R   VKLS  
Sbjct: 236 KNVLFFSRLLDGNYPDTTSLIPQESKTEIIVNTKEFLQAIDRASLLAREGRNNVVKLSAK 295

Query: 292 S-DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             + + ++ ++P++GK +E++         ++I F+ KY+L+ +  +        E+   
Sbjct: 296 PAESIEISSNSPEIGKVVEAVLADQIEGEELNISFSPKYMLDALKVLEGA-----EIRVS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR  + ++            +++P+R
Sbjct: 351 FTGAMRPFLIRTPNDETIVQ---------LILPVR 376


>gi|261400580|ref|ZP_05986705.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970]
 gi|269209656|gb|EEZ76111.1| DNA polymerase III, beta subunit [Neisseria lactamica ATCC 23970]
          Length = 367

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 112/384 (29%), Positives = 197/384 (51%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  + P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTSGPECGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++     + +  G S F LQ+ P  +FP   
Sbjct: 64  ADFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPADDFPQIN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E V  +FEL     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 IGEDVSAAFELEQEAFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGGQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + +   +I+PRK V E+ ++L++    ++V L + ++       ++  ++
Sbjct: 179 AYSACAIGADLPR-AELILPRKTVLELFKLLNNPSDPIQVELLDKQVRFRCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++R +I+++ +I+  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERAAILANEKIRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    ++  FN  YL++++ NI +     D++      +N       
Sbjct: 298 NEQEEAREEIEIAYQGGELEAGFNIGYLMDVLRNIHT-----DDMQLAFGDANRPTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D           N  YV+MPMRI
Sbjct: 353 PDNP---------NFKYVVMPMRI 367


>gi|295402122|ref|ZP_06812081.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|312109153|ref|YP_003987469.1| DNA polymerase III subunit beta [Geobacillus sp. Y4.1MC1]
 gi|294975805|gb|EFG51424.1| DNA polymerase III, beta subunit [Geobacillus thermoglucosidasius
           C56-YS93]
 gi|311214254|gb|ADP72858.1| DNA polymerase III, beta subunit [Geobacillus sp. Y4.1MC1]
          Length = 378

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 183/395 (46%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKIT++R  +++ +    + +  + TIP+   + + A    + +  S  +I I   IP  
Sbjct: 1   MKITIDREALVQSVQDVMKAVSPRTTIPILTGIKITATPQGVTLTGSDSDISIESFIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL +        E +      I  G + F L  
Sbjct: 61  DEDKVLVEIAETGSIVLQARFFSEIVKKLPEKTV---EIEVQPNFLTVIRSGKAEFSLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    FE+ + +LK ++ +T FA++  E R  L G+ + I +E+  L 
Sbjct: 118 LDAEEYPRLPQIEEENVFEIPTDLLKTIIRQTVFAVSVSETRPILTGVNWRIEDEE--LI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  I  +  +  ++++P K++ E+ +IL   ++ VK+ ++ ++I    
Sbjct: 176 CTATDSHRLALRKAKIETENHQSHNVVIPGKSLNELSKILDDSNAPVKIVITANQILFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL+DG +P    +IP  +  ++ VN     QA+DR S+++   R   VKL +L
Sbjct: 236 KRLLFFSRLLDGNYPETSRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           S   + ++  +P++GK  E +         + I F+ KY+++ +  +   +     +   
Sbjct: 296 SDGIIEISSVSPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTD-----IKIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    DS            +++P+R
Sbjct: 351 FTGAMRPFLLRPLHSDS---------MLQLILPVR 376


>gi|229015407|ref|ZP_04172413.1| DNA polymerase III subunit beta [Bacillus cereus AH1273]
 gi|229026931|ref|ZP_04183254.1| DNA polymerase III subunit beta [Bacillus cereus AH1272]
 gi|228734389|gb|EEL85060.1| DNA polymerase III subunit beta [Bacillus cereus AH1272]
 gi|228745886|gb|EEL95882.1| DNA polymerase III subunit beta [Bacillus cereus AH1273]
          Length = 381

 Score =  318 bits (815), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEVVEIEQSGSIVLQAKYFSEIVKKLP-KEIVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLEISSNSPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KISFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|262281563|ref|ZP_06059342.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
 gi|262257022|gb|EEY75761.1| DNA polymerase subunit III [Acinetobacter calcoaceticus RUH2202]
          Length = 382

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 117/400 (29%), Positives = 207/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLS 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E+   +  A++   IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEITASSTSAQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + ++    +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGNITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLLE++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNIPLEMSFNAQYLLEVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VNMSMSEANQSVLVQDP---------AHSDQTYVVMPMRV 382


>gi|299541764|ref|ZP_07052087.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1]
 gi|298725502|gb|EFI66143.1| DNA polymerase III subunit beta [Lysinibacillus fusiformis ZC1]
          Length = 378

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 179/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +LE L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI V A +  +IVRKL              G + +I  G S F+L  
Sbjct: 61  EDGQQIIHITETGSIVVQARMFNEIVRKLPTNDVEIQVT---PGFQTHIRSGKSEFHLIG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   E      F + + +LK ++  T FA+AT E R  L G+ + I  E   L 
Sbjct: 118 SDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNE--TLI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA  +V +        S+++P K++ E+ ++L    + V++ ++  ++    
Sbjct: 176 CVATDSHRLARRKVQLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
             +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V+  + 
Sbjct: 236 GDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVVRFEIL 295

Query: 292 SDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            ++ + ++ ++P++GK  E + V       + I F+ KY++E +  I   +     VV +
Sbjct: 296 DNQAVEVSSNSPEIGKVQEEIPVEALEGEGLKISFSAKYMMEALKAIDGQD-----VVIQ 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    D+            +++P+R
Sbjct: 351 FTGAMRPFILRSVHDDAI---------LQLILPVR 376


>gi|118465865|ref|YP_879305.1| DNA polymerase III subunit beta [Mycobacterium avium 104]
 gi|118167152|gb|ABK68049.1| DNA polymerase III, beta subunit [Mycobacterium avium 104]
          Length = 382

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 89/393 (22%), Positives = 165/393 (41%), Gaps = 28/393 (7%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66
           R    + +    + +  +  +PV   VLL   D  L I     E+     + A +   GS
Sbjct: 2   RESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEIASPGS 61

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           + VS  LL DIVR L +     +      G  V ++ G + F L +    ++P+      
Sbjct: 62  VLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTLPTLPE 117

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
             +  L + +    + +   A   ++    L GI   I+ + + L   ATD  RLAV E+
Sbjct: 118 E-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRLAVREL 174

Query: 187 DIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMS 238
              A    +  +++VP K + E  R      S V++SL        +  + ++      +
Sbjct: 175 TWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRLSLGAGAGVGKDGLLGISGNGKRST 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL+D EFP ++ ++P  +     +N   L +A+  V++++  R   V++  S   L ++
Sbjct: 234 TRLLDAEFPKFRQLLPAEHTAVATINVAELTEAIKLVALVA-DRGAQVRMEFSEGSLRLS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   +      
Sbjct: 293 AGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSVRS-----ERVSFGFTTPGKPAL 347

Query: 359 IRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
           +R    D      +        +  Y+LMP+R+
Sbjct: 348 LRPASDDDSPPSGSGPFSALPTDYVYLLMPVRL 380


>gi|327475231|gb|AEA77210.1| DNA polymerase III beta subunit [Bacillus aquimaris]
          Length = 378

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R  +++ +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MKFVIQREALVQSVQDVMKAVTSRTTIPILTGIKIIATEEGVTLTGSDSDISIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   G I + A    +IV+KL          E +   +  I  G + F L  
Sbjct: 61  EEGSEIVEIMDNGGIVLQAKFFSEIVKKLPKDTV---EIEVQNHFQTVIRSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E     ++++ +LK ++ +T FA++T E R  L G+   I   D +L 
Sbjct: 118 LDPEEYPHLPQIEEGNGIKVSTDLLKTMIRQTVFAVSTSETRPILTGVNCQIA--DGELS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA+ +  I        +I++P K++ E+ +IL   D  V++ ++E+++    
Sbjct: 176 CIATDSHRLAMRKAPIETIHDASYNIVIPGKSLNELNKILDDTDEPVEIVITENQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++   R   VKL +L
Sbjct: 236 KHLLFFSRLLEGNYPDTSRLIPSDTKTELTLNTKEFLQAIDRASLLAREGRNNVVKLSTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++GK IE +         + I F+ KY+++ +  I        E+   
Sbjct: 296 EGGIIEISSNTPEIGKVIEEVQSESVEGEDLKISFSAKYMMDALKAIEGT-----EIYVN 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     ++    DS            +++P+R
Sbjct: 351 FTGAMRPFVLKPLHDDSI---------LQLILPVR 376


>gi|307331908|ref|ZP_07611004.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu
           4113]
 gi|306882426|gb|EFN13516.1| DNA polymerase III, beta subunit [Streptomyces violaceusniger Tu
           4113]
          Length = 376

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 87/391 (22%), Positives = 169/391 (43%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +  +PV   +L++A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWTARSLPARPPVPVLAGILMKAEEGALSLSGFDYEVSARVSVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++ VS  LL DI R L +       + +  G  V +  G S F L + P  E+P+
Sbjct: 61  IEDDGTVLVSGRLLADICRALPNRP----VEISSDGVRVTVVCGSSRFTLHTLPVEEYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V      +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFAAAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +   + ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPETPDISAVALVPAKTLLDTAKSLTSGD-TVALALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+L+     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETPPFVEAVKRVALVA-ERNTPVRLTFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++   +   + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAMDAEADEAYKYLIMPVRL 374


>gi|172036779|ref|YP_001803280.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142]
 gi|171698233|gb|ACB51214.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142]
          Length = 393

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/407 (23%), Positives = 184/407 (45%), Gaps = 38/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK    +SD+   L    R +  + T P+  +VL+ A+     + + A    + I  +  
Sbjct: 1   MKFVCSQSDLNSNLSLVSRAVPSRPTHPILANVLVIADSQKNRVSLTAFDLSLGIETSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPES 116
           A V   G IT+ A LL DIV +L +G      +E  +     V +      F +++    
Sbjct: 61  ADVSEDGKITLPAKLLNDIVSRLPEGEITLMAEEAEDNDSQIVALKCASGQFQVRAMDAE 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP     E   S +L   +L   ++   FA +++E +  L G+      + L+    AT
Sbjct: 121 EFPPLPTVEEGESIQLPIIMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEF--AAT 178

Query: 177 DGHRLAVAEVDIVAQIAKM--------------PSIIVPRKAVGEILRILSSKDSSVKVS 222
           DGHRL+V E  +  Q  +                ++ +P +A+ E+ R++ ++  S  ++
Sbjct: 179 DGHRLSVVETTLPPQTDEDNEDETSSEMPNLEGFAVTIPARALRELERMIGNRSESDAIA 238

Query: 223 L--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           L   E+++   +    ++VR +DG +PNYQ +IP    + + +    L  +++RV++++ 
Sbjct: 239 LQVDEAQVVFQLGHQRLTVRKLDGAYPNYQMLIPKEFTRTISLERKRLLSSLERVAVLAD 298

Query: 281 VRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +   VK +      ++ ++V+  D+G A ESM         +I FN KYL++ +  + +
Sbjct: 299 QKNNLVKCTFNHEEGQVSLSVETQDLGSAKESMPAEVTGESGEIAFNVKYLMDGLKALPT 358

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +L+  N  V           N    +   Y++MP++I
Sbjct: 359 K-----EIKMQLNEGNQPVIF---------NPLGGLQMTYLVMPVQI 391


>gi|294668098|ref|ZP_06733205.1| DNA polymerase III, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
 gi|291309806|gb|EFE51049.1| DNA polymerase III, beta subunit [Neisseria elongata subsp.
           glycolytica ATCC 29315]
          Length = 367

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 115/384 (29%), Positives = 200/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++  G   I A+  EI+I    P S  
Sbjct: 4   LQADRDALLKPLQAVTGIVERRHTLPILSNVLLESTHGQTNILATDLEIQINTDGPKSEA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A  L DI+R L +GAQ++    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKLQDILRALPEGAQVAL---DWAQNRLTLKAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E V S F L    LK ++ +  ++MA ++IRYYLNG+      + L+L  VATDGHRL
Sbjct: 121 VGEEVSSAFSLTQEALKGMLSQVQYSMAVQDIRYYLNGLLMQTEGDQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +   I A + K   +I+PRK V E+ ++L+  +  V V L  +++        +  ++
Sbjct: 179 AYSAATIEADLPK-AEVILPRKTVLELFKLLNQPNEQVSVELLNNQVRFRCNGTVIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG+FP++  VIP  NDK   +N ++L  A++R +I+++ + +  +L L    L +   N
Sbjct: 238 VDGKFPDFNRVIPLDNDKIFLLNRSHLLGALERAAILANEKFRGARLHLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ N+ +     +++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGGELEVGFNINYLMDVLRNVHA-----EDMQLAFGDANRSTLFTI 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|320009751|gb|ADW04601.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 376

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 168/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSAKVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  IEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +  +  ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++   +   + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAVLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEADDAYKYLIMPVRL 374


>gi|33862274|ref|NP_893834.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9313]
 gi|33640387|emb|CAE20176.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9313]
          Length = 388

 Score =  317 bits (814), Expect = 1e-84,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 192/402 (47%), Gaps = 33/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  A+ 
Sbjct: 1   MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+    +E G +V +     ++ ++     +F
Sbjct: 61  ASVESSGAITLPARLLGEIVARLSSDSPIT-LATDEAGEQVELKSSSGSYQMRGMSADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + ++ +  L   +  T FA +++E +  L G+  H + +   + A ATDG
Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKA--MEAAATDG 177

Query: 179 HRLAV--------AEVDIVAQIAKM---PSIIVPRKAVGEILRILSS--KDSSVKVSLSE 225
           HRLAV         E  + +++       S+ +P +++ E+ R+++    D  V +   +
Sbjct: 178 HRLAVLSLADALAVETTVSSEMDDEGENFSVTLPSRSLREVERLIAGWRGDDQVSLFCDK 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++        ++ R +DG +PNY+ +IP    +   V+      A++R+++++      
Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFIAALERIAVLADQHNNV 297

Query: 286 VKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           VK+S  +  + L ++ D  D+G   ES++  +    + I FN +Y+L+ +  + S     
Sbjct: 298 VKVSGDNTSELLQISADAQDVGSGSESLSAEFTGDAVQIAFNVRYVLDGLKVMDS----- 352

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D +V R ++  +   I  KD D        +   Y++MP++I
Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386


>gi|71275533|ref|ZP_00651819.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon]
 gi|71900180|ref|ZP_00682320.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1]
 gi|170729253|ref|YP_001774686.1| DNA polymerase III subunit beta [Xylella fastidiosa M12]
 gi|71163833|gb|EAO13549.1| DNA polymerase III, beta chain [Xylella fastidiosa Dixon]
 gi|71730069|gb|EAO32160.1| DNA polymerase III, beta chain [Xylella fastidiosa Ann-1]
 gi|167964046|gb|ACA11056.1| DNA-directed DNA polymerase [Xylella fastidiosa M12]
          Length = 366

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 122/385 (31%), Positives = 210/385 (54%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+       
Sbjct: 1   MRFRLQRETFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G IT+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS
Sbjct: 61  DAESGEITIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHR
Sbjct: 118 IDKIEVTERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +
Sbjct: 176 LALCETELEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP   D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   
Sbjct: 236 LIDGSFPDYEGVIPIGADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAH 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           NP+  +A E +        + I FN  YLL+ + ++       D V  +L  SNSS  IR
Sbjct: 296 NPEQEEAQEEIEAQTIVDGLAIGFNVNYLLDALSSLRG-----DFVNIQLRDSNSSALIR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                    + N   +  V+MP+R+
Sbjct: 351 ---------ESNSEKSLQVVMPLRL 366


>gi|299768252|ref|YP_003730278.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1]
 gi|298698340|gb|ADI88905.1| DNA polymerase III, beta subunit [Acinetobacter sp. DR1]
          Length = 382

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 116/400 (29%), Positives = 207/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I+E  L+  AV T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E+   +  +++   IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEITASSTSSQLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + ++    +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLISHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +AIE + + Y   P+++ FN +YLLE++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAIEDLAIQYQNVPLEMSFNAQYLLEVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VNMSMSEANQSVLVQDP---------AHTDQTYVVMPMRV 382


>gi|302336551|ref|YP_003801757.1| DNA polymerase III subunit beta [Spirochaeta smaragdinae DSM 11293]
 gi|301633736|gb|ADK79163.1| DNA polymerase III, beta subunit [Spirochaeta smaragdinae DSM
           11293]
          Length = 367

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 112/385 (29%), Positives = 204/385 (52%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T E++ +L+ +  A  II  +N + +  +VLL+A+DG L IKA+  ++     IP  
Sbjct: 1   MKFTCEKNALLKEISIAQEIISTRNALSILSNVLLEADDGSLTIKATDLKVSFETRIPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       I+R L +G       +N +           NF L+S    +FP 
Sbjct: 61  IAAPGSTTVFCDKFLGILRSLPEGDIEVELVDNRVMIRPLFQ--KINFQLKSIAGDKFPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E      FE+    L  ++ +T FA++ +E RYY+NG++   + E + +  VATDG R
Sbjct: 119 LQEVSEDLYFEIPQKDLIEMIGQTIFAVSDDETRYYMNGVYVEQDGESISM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++ +  I +++ +  ++I+P K + +++R LSS + ++K+++S+  I +  +   ++  
Sbjct: 177 LSLIKRRIESELKEFDAVIIPPKVL-QLIRKLSSGEGNLKIAISDRNIFVQFDDQRITSN 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP S D +L VN   L +A+ RVS++   + + V LS+ +  + +T +
Sbjct: 236 LIEGQFPNYRRVIPDSQDYQLVVNRDQLEEALKRVSLLVEQKSRRVYLSVENAMMRLTSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E ++  Y      I  NY YL E +  +       +EVV R   +N ++ + 
Sbjct: 296 ESDIGVAKEELSCSYEGPETTIALNYLYLAEPLKVMRC-----EEVVLRFTEANKAITLE 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                       + + F+++MPM++
Sbjct: 351 PV---------PEGDYFHIIMPMQL 366


>gi|124021715|ref|YP_001016022.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9303]
 gi|123962001|gb|ABM76757.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9303]
          Length = 388

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 191/402 (47%), Gaps = 33/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  A+ 
Sbjct: 1   MKLVCSQAELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTALT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ A LL +IV +L   + I+    +E G +V +     ++ ++     +F
Sbjct: 61  ASVESSGAITLPARLLGEIVSRLSSDSPIT-LATDEAGEQVELKSLSGSYQMRGMSADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + ++ +  L   +  T FA +++E +  L G+  H + +   + A ATDG
Sbjct: 120 PELPLVESGKAVKVNARALLTALRGTLFASSSDEAKQLLTGVHLHFDGKA--MEAAATDG 177

Query: 179 HRLAV--------AEVDIVAQIAKM---PSIIVPRKAVGEILRILSS--KDSSVKVSLSE 225
           HRLAV         E  + +         ++ +P +++ E+ R+++    D  V +   +
Sbjct: 178 HRLAVLSLADALDVETTLSSDTDDEGENFAVTLPSRSLREVERLIAGWRSDDQVSLFCDK 237

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
            ++        ++ R +DG +PNY+ +IP    +   V+      A++R+++++      
Sbjct: 238 GQVVFLAADQVVTSRTLDGTYPNYRQLIPDGFARSFDVDRRAFISALERIAVLADQHNNV 297

Query: 286 VKLS--LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           VK+S   +S+ L ++ D  D+G   ES++  +    + I FN +Y+L+ +  + S     
Sbjct: 298 VKVSGDSTSELLQISADAQDVGSGSESLSAEFTGDSVQIAFNVRYVLDGLKVMDS----- 352

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           D +V R ++  +   I  KD D        +   Y++MP++I
Sbjct: 353 DRIVLRCNAPTTPAIISPKDDD--------IGFTYLVMPVQI 386


>gi|58584686|ref|YP_198259.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
 gi|58419002|gb|AAW71017.1| DNA polymerase III beta clamp subunit [Wolbachia endosymbiont
           strain TRS of Brugia malayi]
          Length = 393

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 123/384 (32%), Positives = 213/384 (55%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  + R+ +L  L     ++ER+N I +   + ++A  G +++ A+  +I I  ++ A 
Sbjct: 29  MRFRIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 88

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VSAH L+DIV+KL     ++F   ++   ++ IS+G++NF L +   ++ P 
Sbjct: 89  VLTEGEVKVSAHTLHDIVKKLPADLDVNFEVNDQ--GKLLISYGNANFSLPNVVLNKLPV 146

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E ++ Y F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 147 LEEGDHKYDFTLLNTDLIDLLNKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 204

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L++L   D  + + LS+ +I        +  +
Sbjct: 205 LSCVKKPKPQNINSEFGVIIPRKTVIELLKVLDDCDE-INIKLSDRKIKFTCGKYIIISK 263

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FP+Y+ VIP S DK++ V  + L   +DRVS++ S RI++++ SL    L +  +
Sbjct: 264 LIDGAFPDYKCVIPASQDKQMVVESSKLASVIDRVSVVVSDRIKSIEFSLQEKSLTLHSN 323

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A E + V YN  P++I FN +YLL+ +  I S      +  F L  S+S+  I 
Sbjct: 324 SQECSDATEFIEVDYNGAPIEIGFNSRYLLDALSCIKS------KCKFSLSDSSSATVIT 377

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +         N  N  Y++MP+R
Sbjct: 378 DE---------NDPNVLYIVMPVR 392


>gi|262193328|ref|YP_003264537.1| DNA polymerase III subunit beta [Haliangium ochraceum DSM 14365]
 gi|262076675|gb|ACY12644.1| DNA polymerase III, beta subunit [Haliangium ochraceum DSM 14365]
          Length = 365

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 203/386 (52%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59
           M+  +++S+ L+ L  A  I +RK+T+P+  +VLL+ +    L + A+   + I+  + +
Sbjct: 1   MEFRIQKSEFLKGLRIAQSIADRKSTMPMLANVLLRTSGKKKLLVAATDLNVSISAELTS 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G +TV A  L+DIV  + +   +    +N       IS G   + L   P+ +FP
Sbjct: 61  KNSAEGGLTVGAKALFDIVANMPEDDVVLRRTDN---NWAEISCGKVKYRLVGMPDRDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E       ++ + +++ +++RT F++  +E R++LNG+ F  +    ++  V+TDGH
Sbjct: 118 KVPEHSEAEFKDVEAELMREMIDRTLFSVCNDETRFHLNGVLFESDGSTARM--VSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  E  +    A    II+P+K +GEI ++L S      V++    I ++ +S+ ++V
Sbjct: 176 RLSKVERTLEGAPALTAGIIIPKKGIGEIKKLLESG-GKAAVAVKTPYIFVHADSMILAV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP Y+ VIP  + +E+ ++   L  A+ R  +MSS   + VK ++S D L +T 
Sbjct: 235 KLIESQFPPYEQVIPKEHTREVVIDRQRLLSALKRAQLMSSE-TRGVKFNVSPDSLVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DNPD+G+  E +   Y+   + I FN KY+++++  +++     D+V   L+       +
Sbjct: 294 DNPDIGEVREELEAQYDGEEVSIGFNPKYVIDLLSQMAT-----DQVTLELNGELDPGLL 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R    D         N   V+MPMRI
Sbjct: 349 RPFSDD---------NYLGVVMPMRI 365


>gi|229072955|ref|ZP_04206151.1| DNA polymerase III subunit beta [Bacillus cereus F65185]
 gi|228710201|gb|EEL62179.1| DNA polymerase III subunit beta [Bacillus cereus F65185]
          Length = 381

 Score =  317 bits (813), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSA-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|282863319|ref|ZP_06272378.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
 gi|282561654|gb|EFB67197.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
          Length = 376

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 89/391 (22%), Positives = 165/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +    R +  +   PV   +LL+A DG L   +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWVARSLPARPPAPVLAGLLLKAEDGALSFSSFDYEVSARVSVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  IEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPTMP-TATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
            AV E     +     ++ +VP K + +  + L+S D +V ++LS     E  I      
Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGD-TVTLALSGSGAGEGLIGFEGAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     
Sbjct: 233 RRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGV 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + D  +A+E ++       + I FN  +LL+ +  I S             +S 
Sbjct: 292 LILEAGSSDDAQAVERVDAVLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTST 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+      + +      Y++MP+R+
Sbjct: 347 KPALLSGR---PAVDAEANDAYKYLIMPVRL 374


>gi|206970404|ref|ZP_03231357.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
 gi|218234602|ref|YP_002364857.1| DNA polymerase III subunit beta [Bacillus cereus B4264]
 gi|218895143|ref|YP_002443554.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228905434|ref|ZP_04069389.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222]
 gi|228911330|ref|ZP_04075134.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200]
 gi|228924235|ref|ZP_04087506.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228955740|ref|ZP_04117735.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228961754|ref|ZP_04123357.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228968643|ref|ZP_04129626.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|229051159|ref|ZP_04194703.1| DNA polymerase III subunit beta [Bacillus cereus AH676]
 gi|229077276|ref|ZP_04209963.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2]
 gi|229112903|ref|ZP_04242434.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15]
 gi|229148040|ref|ZP_04276379.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24]
 gi|229153649|ref|ZP_04281825.1| DNA polymerase III subunit beta [Bacillus cereus m1550]
 gi|229181736|ref|ZP_04309059.1| DNA polymerase III subunit beta [Bacillus cereus 172560W]
 gi|229193741|ref|ZP_04320682.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876]
 gi|296500840|ref|YP_003662540.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
 gi|206734981|gb|EDZ52150.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
 gi|218162559|gb|ACK62551.1| DNA polymerase III, beta subunit [Bacillus cereus B4264]
 gi|218540727|gb|ACK93121.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228589766|gb|EEK47644.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10876]
 gi|228601769|gb|EEK59267.1| DNA polymerase III subunit beta [Bacillus cereus 172560W]
 gi|228629835|gb|EEK86488.1| DNA polymerase III subunit beta [Bacillus cereus m1550]
 gi|228635465|gb|EEK91956.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST24]
 gi|228670582|gb|EEL25895.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-15]
 gi|228706031|gb|EEL58332.1| DNA polymerase III subunit beta [Bacillus cereus Rock4-2]
 gi|228722222|gb|EEL73623.1| DNA polymerase III subunit beta [Bacillus cereus AH676]
 gi|228791072|gb|EEM38690.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228797948|gb|EEM44958.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228803968|gb|EEM50592.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228835453|gb|EEM80823.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228848348|gb|EEM93198.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 200]
 gi|228854254|gb|EEM98957.1| DNA polymerase III subunit beta [Bacillus thuringiensis IBL 4222]
 gi|296321892|gb|ADH04820.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
          Length = 381

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|30018280|ref|NP_829911.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579]
 gi|228942639|ref|ZP_04105171.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228975569|ref|ZP_04136121.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228982205|ref|ZP_04142494.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407]
 gi|229130736|ref|ZP_04259689.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4]
 gi|29893820|gb|AAP07112.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579]
 gi|228652753|gb|EEL08638.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-Cer4]
 gi|228777557|gb|EEM25835.1| DNA polymerase III subunit beta [Bacillus thuringiensis Bt407]
 gi|228784179|gb|EEM32206.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228817065|gb|EEM63158.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326937799|gb|AEA13695.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 381

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 189/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|172056047|ref|YP_001812507.1| DNA polymerase III subunit beta [Exiguobacterium sibiricum 255-15]
 gi|171988568|gb|ACB59490.1| DNA polymerase III, beta subunit [Exiguobacterium sibiricum 255-15]
          Length = 377

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT++R  +++ +    + +  + TIP+   + L+A+   + +  S  EI I   I A 
Sbjct: 1   MHITIQRDTLIQAIQDVAKAVSSRTTIPILTGIKLEAHGDGMTLTGSDTEISIERTIYAE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GS+ ++A    DIV+KL     I     N +     I  G + F+L  
Sbjct: 61  ENGTSYVTVHRAGSVVLNARFFGDIVKKLPTDEVILEVSPNFM---TRIQSGTAEFHLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP   + +    F L + +L++++ +T FA+A +E R  L G+ F  +++   L 
Sbjct: 118 LDPDEFPRLPQVDGGQQFRLPADLLRSMIRQTSFAVAVQETRPVLTGVNFSADKD--ILT 175

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            V+TD HRLA+              ++IVP K++ E+ ++LS  D  V ++++  +I   
Sbjct: 176 CVSTDSHRLALRRAQFETDNEISFQNVIVPGKSLNELSKLLS--DGHVDITITNQQILFK 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           ++ +    RL+DG +P+   +IP      +R+N   L QA+DR S+++   R   +K + 
Sbjct: 234 MKHVLFFSRLLDGNYPDTSRLIPEEYRTAVRMNAKELLQAIDRASLLAREDRNNVIKFAA 293

Query: 291 SSDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
                + ++  +P++GK  E +++       + I FN KY+++ +  + + +     +  
Sbjct: 294 EGTTAVEISSHSPEVGKVSEQVSILSLEGEELKISFNSKYMMDALKALDATD-----IEI 348

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   S     +   D+D         N   +++P+R
Sbjct: 349 QFTGSIRPFILHPVDQD---------NVLQLILPVR 375


>gi|239825586|ref|YP_002948210.1| DNA polymerase III subunit beta [Geobacillus sp. WCH70]
 gi|239805879|gb|ACS22944.1| DNA polymerase III, beta subunit [Geobacillus sp. WCH70]
          Length = 378

 Score =  317 bits (812), Expect = 2e-84,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 182/395 (46%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKI ++R  +++ +    + +  + TIP+   + + A    + +  S  +I I   IP  
Sbjct: 1   MKIKIDREALVQSVQDVMKAVSPRTTIPILTGIKIAATSQGVTLTGSDSDISIESFIPTE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL +    +   E +      I  G + F L  
Sbjct: 61  EEDKVLVEVVETGSIVLQARFFSEIVKKLPEN---TIEIEVQPNFLTVIRSGKAEFSLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F++ + +LK ++ +T FA++T E R  L G+ + +  ED +L 
Sbjct: 118 LDAEEYPRLPQIEEENVFKIPTDLLKTIIRQTVFAVSTSETRPILTGVNWRV--EDGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ +  I  +  +  ++++P K++ E+ +IL   +  V + ++ ++I    
Sbjct: 176 CTATDSHRLALRKAKIETENQQSYNVVIPGKSLNELSKILDDSNDPVDIVITANQILFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL+DG +P    +IP  +  ++ VN     QA+DR S+++   R   VKL +L
Sbjct: 236 KHLLFFSRLLDGNYPETTRLIPTDSKTDIIVNAKEFLQAIDRASLLAREGRNNVVKLTTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   + ++  +P++GK  E +         + I F+ KY+++ +  +   +     +   
Sbjct: 296 NDGIIEISSISPEIGKVTEEIQSESIEGEELKISFSAKYMMDALKALDGTD-----IQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    DS            +++P+R
Sbjct: 351 FTGAMRPFLLRPLHSDS---------MLQLILPVR 376


>gi|254483315|ref|ZP_05096546.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2148]
 gi|214036410|gb|EEB77086.1| DNA polymerase III, beta subunit [marine gamma proteobacterium
           HTCC2148]
          Length = 326

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 110/345 (31%), Positives = 195/345 (56%), Gaps = 20/345 (5%)

Query: 42  LEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100
           L +  +  E+E+ G +  AS    G +T+ A  L DI + L +G++ISF  E+   ++V 
Sbjct: 1   LSLTGTDLEVELVGRVKLASAGDSGELTLPARKLVDICKSLPEGSEISFAAED---SKVT 57

Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160
           +  G S F L + P  EFP+ ++    + F +    LK L++RT FAMA +++RYYLNG+
Sbjct: 58  VKSGRSRFTLSTLPAREFPNVEDSMGTHQFTIKQGQLKRLIDRTGFAMAQQDVRYYLNGM 117

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
            + + ++ LK+  VATDGHRLA+  +    +      +I+PRK V E+ R+L ++D  + 
Sbjct: 118 LWELKDKQLKV--VATDGHRLALCTLPEKIEAGDDAQVILPRKGVLELARLLLAEDEDIA 175

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + +  + I    E  + + +L+DG+FP+YQ V+P S +K +  +   LRQA  R +I+S+
Sbjct: 176 IVIGSNHIRATTEEFTFTSKLVDGKFPDYQRVLPRSPNKIVLGSRLELRQAFTRTAILSN 235

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            + + V+L L+ + L +  +NP+  +A E++ V Y    +++ FN  YLL+++  +S   
Sbjct: 236 EKYRGVRLKLTDNSLDIVANNPEQEEAEEAVPVDYQGESLEVGFNVSYLLDVLAVLSG-- 293

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +++   L   NSS  +   D+          ++ YV+MPMR+
Sbjct: 294 ---EQIKLSLSDPNSSALLEESDE---------GDSLYVVMPMRL 326


>gi|308389996|gb|ADO32316.1| putative DNA polymerase III, beta subunit [Neisseria meningitidis
           alpha710]
          Length = 367

 Score =  317 bits (812), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 115/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGKGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++   + + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALLAGALVSLDWDD---SRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLEQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A +     +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLP-HAEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L S  L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQSGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|262374720|ref|ZP_06067992.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205]
 gi|262310376|gb|EEY91468.1| DNA polymerase III, beta subunit [Acinetobacter junii SH205]
          Length = 382

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 112/400 (28%), Positives = 201/400 (50%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  +V +Q     L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTTQQALTITGSDLEVELVASTTLA 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  DGACIEAGETTVPARKLVEICKSLPSAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I++  L+   V T
Sbjct: 119 YPLLSTENSLGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ EV   +        IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEVLASSTATSSIQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQGDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ S D L +  +NP+  +A E + + Y + P+++ FN +Y+L+++  +       D+
Sbjct: 297 VFLNFSQDTLQLRANNPEQDEASEDLVIQYQDAPLEMSFNAQYILDVLSVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VRMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|229164441|ref|ZP_04292369.1| DNA polymerase III subunit beta [Bacillus cereus R309803]
 gi|228619046|gb|EEK75944.1| DNA polymerase III subunit beta [Bacillus cereus R309803]
          Length = 379

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN   T+  I+ G S F L  
Sbjct: 61  ENGKEIVEVAQSGSIVLQAKYFSEIVKKLP-KETVEISVENHFMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I     +   S+++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|95929987|ref|ZP_01312727.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM
           684]
 gi|95133956|gb|EAT15615.1| DNA polymerase III, beta subunit [Desulfuromonas acetoxidans DSM
           684]
          Length = 372

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 215/389 (55%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MKIT +++D+L+ L     ++E+K T+P+  +VLL+ +     L + A+  EI I   I 
Sbjct: 1   MKITTKKNDLLKGLTLVQGVVEKKKTLPILSNVLLETDKETSQLILTATDLEIGIKTHIK 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   G IT+SA  LY+IV++L D       KEN     V I +G + F +      EF
Sbjct: 61  AEIISDGKITISAKKLYEIVKELADAEITLKVKEN---NWVEIINGKAKFNIVGLSSEEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVAT 176
           P   +++   +  +    LKN++++T +A++ +E ++ LNGI+ H    D K  +  V+T
Sbjct: 118 PLITDKQTDNNLSIDGITLKNIIDKTFYAISNDESKFNLNGIYLHSESIDNKNYIKFVST 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRL++ +++   +I     +I P+K + E+ +I+  ++  +K+S+ ++   +NI+  +
Sbjct: 178 DGHRLSLMQIESDTKILDQKGVIFPKKGLAELRKIIDQENQDIKISILDNNAVINIKETT 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RLIDG+FP+Y+ VIP  +D   ++N   L   + R+S++++ + + + +    +++ 
Sbjct: 238 LVMRLIDGDFPDYKRVIPEMSDNYCQINGEILLHTLRRISLLANEKSKGINIEFLQNEIN 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  NP+ G A E++   Y    + I FN KYL+++I N     VVD ++   +  + S 
Sbjct: 298 VTSSNPEYGDASETIKTIYEGNNVKIGFNSKYLIDVISN-----VVDKDIRIYIKDNMSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I  +D +         N   V+MPMRI
Sbjct: 353 CLILPEDTN---------NYLAVIMPMRI 372


>gi|240172092|ref|ZP_04750751.1| DNA polymerase III subunit beta [Mycobacterium kansasii ATCC 12478]
          Length = 399

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 88/398 (22%), Positives = 167/398 (41%), Gaps = 28/398 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + +    E +    + +  +  +PV   VLL  +D  L I     E+     + A +
Sbjct: 14  KFRLVKESFAEAVSWVAKNLPTRPAVPVLSGVLLTGSDDGLTISGFDYEVSAEVQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DI R L +     +      G  V ++ G++ F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDITRALPNKPVDFYVD----GNRVALTCGNARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L S +    + +   A   ++    L GI   I    + L   ATD  RL
Sbjct: 130 PTLPDD-TGTLPSDLFAEAISQVAIAAGRDDTLPMLTGIRVEIAGHTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  S++VP K + E  +  +S  S V++SL        +  + ++  
Sbjct: 187 AVRELTWTALSPDIEASVLVPAKTLAEAAKA-NSDGSDVRLSLGAGTGVGKDGLLGISGN 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +      +   L +A+  V++++  R   V++  +  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPVEHTAVATADVAELTEAIKLVALVA-DRGAQVRMEFAEG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL + + ++ S     + V F   + 
Sbjct: 305 TLRLSAGADDVGRAEEDLAVDFAGEPLTIAFNPTYLTDGLGSLHS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
                +R    +      +        +  Y+LMP+R+
Sbjct: 360 GKPALLRPASAEDATPTGSGPFAAVPTDYVYLLMPVRL 397


>gi|294630339|ref|ZP_06708899.1| DNA polymerase III, beta subunit [Streptomyces sp. e14]
 gi|292833672|gb|EFF92021.1| DNA polymerase III, beta subunit [Streptomyces sp. e14]
          Length = 376

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 168/390 (43%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  + V++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFASAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235
            AV E     +   + ++ +VP K + +  + L+S DS +         E  I       
Sbjct: 174 FAVREFLWKPENPDVSAVALVPAKTLQDTAKALTSGDSVILALSGSGAGEGLIGFEGAGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     L
Sbjct: 234 RTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + D  +A+E ++   +   + I FN  +LL+ +  I S             +S  
Sbjct: 293 ILEAGSSDDAQAVERVDAQLDGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + GK      + +      Y++MP+R+
Sbjct: 348 PALLSGK---PAVDAEADDAYKYLIMPVRL 374


>gi|294648701|ref|ZP_06726161.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC
           19194]
 gi|292825376|gb|EFF84119.1| DNA polymerase III, beta chain [Acinetobacter haemolyticus ATCC
           19194]
          Length = 382

 Score =  316 bits (811), Expect = 3e-84,   Method: Composition-based stats.
 Identities = 110/400 (27%), Positives = 203/400 (50%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  ++ +L H    +ER++T+ +  +V +Q     L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLEPGETTVPARKLVEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I++  L+   V T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ EV   +  +     IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEVLASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +A+E + + Y + P+++ FN +Y+L+++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VRMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|218245876|ref|YP_002371247.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8801]
 gi|257058924|ref|YP_003136812.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 8802]
 gi|218166354|gb|ACK65091.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8801]
 gi|256589090|gb|ACU99976.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 8802]
          Length = 393

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 102/407 (25%), Positives = 187/407 (45%), Gaps = 38/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK    +S++   L    R +  + T PV  +VLL A++  G + + A    + I  +  
Sbjct: 1   MKFLCSQSELNSNLSLVSRAVPSRPTHPVLGNVLLVADESKGRVSLTAFDLSLGIQTSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE---LGTEVNISHGDSNFYLQSFPE 115
           A V   G++ + A LL DIV +L +G        +E       + +      F L++   
Sbjct: 61  AEVSQGGTVALPAKLLNDIVSRLPEGEITLIADADESEDDSQIITLKSASGQFQLRAMSA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFPS    E V + +L  S+L   ++ + FA +++E +  L G+  H+      L   A
Sbjct: 121 EEFPSLPTIEGVDALKLRISLLIEGLKGSLFAASSDETKQVLTGV--HLAGTVDSLEFAA 178

Query: 176 TDGHRLAVAEVDIVAQIAKM-------------PSIIVPRKAVGEILRILSS--KDSSVK 220
           TDGHRLAV    +  +  +               S+ +P +A+ E+ R+LSS     +V 
Sbjct: 179 TDGHRLAVVTTPLQPEATEEEEGKTLAEGDFEGFSVTIPARALRELERMLSSRQGSDTVA 238

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + + E++I   +    ++ R +DG +P Y  +IP    + + V       +++RV++++ 
Sbjct: 239 LYVDEAQIVFELGEQRLTSRKLDGAYPAYNQLIPRQFSRTVNVERKRFMSSLERVAVLAD 298

Query: 281 VRIQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +   VK +L  D+  + ++V+  D+GKA ESM         D+ FN KYL++ +  + S
Sbjct: 299 QKNNLVKCTLDGDEGLVSLSVEAQDLGKAKESMPAEITGEGGDVAFNVKYLMDGLKALPS 358

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +L+  N  V +              +   Y++MP++I
Sbjct: 359 Q-----EIQIQLNEGNQPVILTP---------LGGLKMTYLVMPVQI 391


>gi|258593679|emb|CBE70020.1| DNA polymerase III, beta-subunit [NC10 bacterium 'Dutch sediment']
          Length = 368

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 111/388 (28%), Positives = 199/388 (51%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R D+L  +G    ++E K ++P+  H+LL+ +   L +  +  +I +   +P  
Sbjct: 1   MHIKVLRDDLLNGVGPIQAVVETKRSLPILSHLLLETSPSYLSVFGTDLDIGVRKRVPGQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI +SA  LY+IVR+L   + +    + EL     I+ G+S F ++     +FPS
Sbjct: 61  VVKEGSIALSARKLYEIVRELPATS-VDLSVDGELT--ATITCGNSEFRVKGLSRDDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E       +   + ++++ RT FA+++++ RY LNGI F +  +D+K+  VATDGHR
Sbjct: 118 M-REPKQSGIVIDRRLFRDMIRRTLFAVSSDQTRYTLNGILFRVTPKDVKM--VATDGHR 174

Query: 181 LAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           LA+   ++ +   ++      I+PRKA  E L++L  +   + + +S++ + L  +   +
Sbjct: 175 LAMTNHELSSDSCQLTAAIDAIIPRKAAAETLKLLREEPGQITIEISDNHLLLQTDDTLI 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RLI+G+FPNY+ VIP +  KE+ VN       + R S +   R     +  +  +L +
Sbjct: 235 DARLIEGQFPNYEQVIPANATKEVTVNREAFLAGLRRTSTILGERALPTTMKFTPGRLLL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N D+G+A E +++ Y    M + FN +Y+L+ +  +++     ++   RL    S  
Sbjct: 295 SCVNLDLGEARERLDIEYQHDEMSVGFNARYILDFLGALTT-----EQATIRLQDPLSPA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              GKD               V+MPMR+
Sbjct: 350 LFSGKDDKQ---------YTCVIMPMRL 368


>gi|226952831|ref|ZP_03823295.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244]
 gi|226836452|gb|EEH68835.1| DNA polymerase III, beta chain [Acinetobacter sp. ATCC 27244]
          Length = 382

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 109/400 (27%), Positives = 203/400 (50%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  ++ +L H    +ER++T+ +  +V +Q     L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLVNVLSHVVGAVERRHTLNILSNVKIQTTPHALTITGSDLEVELVASTNLA 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A +      +      +  G+S F L + P  +
Sbjct: 61  EGACLEPGETTVPARKLVEICKSLPTAALVDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E       ++    LK L E+T FAMA +++R+YL G    I++  L+   V T
Sbjct: 119 YPLLTTENSQGTQVQVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDQNQLR--TVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ EV   +  +     IVPRKAVGE+ R+LS +D  + + +    +++ I +  
Sbjct: 177 DGHRLALCEVLASSTASAPMQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQSDITVRFTTKLIDGKFPDYRRVIPRGGDKHVLIAHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ + D L +  +NP+  +A+E + + Y + P+++ FN +Y+L+++  +       D+
Sbjct: 297 VFLNFNQDSLQLRANNPEQDEAVEDLAIQYQDAPLEMSFNAQYILDVLSVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VRMSMTEANQSVLVQDP---------AHPDQTYVVMPMRV 382


>gi|228994209|ref|ZP_04154109.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442]
 gi|228995398|ref|ZP_04155070.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17]
 gi|229003012|ref|ZP_04160871.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4]
 gi|228758240|gb|EEM07426.1| DNA polymerase III subunit beta [Bacillus mycoides Rock1-4]
 gi|228764351|gb|EEM13226.1| DNA polymerase III subunit beta [Bacillus mycoides Rock3-17]
 gi|228765661|gb|EEM14315.1| DNA polymerase III subunit beta [Bacillus pseudomycoides DSM 12442]
          Length = 381

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 186/398 (46%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVVTEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGHTISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ ++P++GK +E +         + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KISFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|52145207|ref|YP_081621.1| DNA polymerase III subunit beta [Bacillus cereus E33L]
 gi|228988719|ref|ZP_04148804.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|229159051|ref|ZP_04287107.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342]
 gi|51978676|gb|AAU20226.1| DNA polymerase III, beta subunit [Bacillus cereus E33L]
 gi|228624470|gb|EEK81241.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 4342]
 gi|228771031|gb|EEM19512.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 379

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I     +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|255659820|ref|ZP_05405229.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544]
 gi|260847895|gb|EEX67902.1| DNA polymerase III, beta subunit [Mitsuokella multacida DSM 20544]
          Length = 370

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 192/386 (49%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  ++++   L    R +  K   P+   + L+A    LE++A+  EI +   I A 
Sbjct: 1   MKITCNKNELTNALQIVARAVATKPQTPILSGIYLRAEGTTLELQATNYEIGLVARIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G +TV      ++VRKL           +E    V+I    + F L S   +EFP+
Sbjct: 61  IEEPGELTVGGRYFQEVVRKLPGENVKLACTADEK--IVHIESAMAKFTLLSMNAAEFPT 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  E    F +  ++L++L+++T FA +T+E R    G    + E   K+   AT+ HR
Sbjct: 119 IQPLEGNLDFAIKDNILRDLIKKTVFACSTDEARPVFTGCSLEVTEN--KVTMAATNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           L+V        I  +  +I+P + + E+L  +SS   + VK+S S ++I  + ++L M+ 
Sbjct: 177 LSVKSETFDQSIGNI-KVIIPSRILQELLHNMSSDIPTDVKISCSYNQISFSFDNLYMTS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+G+FPNY+ VIP      ++ +      AVDR+S+++       +KL  + +++ +T
Sbjct: 236 RLIEGQFPNYRGVIPPDFATHVKTDTAAFAAAVDRISLIARAGVYNTIKLEFADNQIHIT 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NP++G A E +    +   + I FN +Y+++++ NI S           L+   S   
Sbjct: 296 SNNPEIGNAEEYIPAEIDGPDIAIAFNAQYIIDVLKNIDSKTC-----RIGLNQPLSPAS 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I+ +D DS           Y++ P+R
Sbjct: 351 IQEEDDDS---------FVYIVTPVR 367


>gi|225862059|ref|YP_002747437.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|300118808|ref|ZP_07056528.1| DNA polymerase III subunit beta [Bacillus cereus SJ1]
 gi|225787164|gb|ACO27381.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|298723776|gb|EFI64498.1| DNA polymerase III subunit beta [Bacillus cereus SJ1]
          Length = 379

 Score =  316 bits (810), Expect = 4e-84,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I   + +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|169825623|ref|YP_001695781.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41]
 gi|168990111|gb|ACA37651.1| DnaN [Lysinibacillus sphaericus C3-41]
          Length = 378

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 177/395 (44%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +LE L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI V A +  +I+RKL              G + +I  G S F+L  
Sbjct: 61  EDGQQIIHIAETGSIVVQARMFNEIIRKLPTNDVEIQVT---PGFQTHIRSGKSEFHLIG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   E      F + + +LK ++  T FA+AT E R  L G+ + I  E   L 
Sbjct: 118 SDAAEYPLLPELTEDQKFTIPADLLKTIIRETVFAVATSESRPVLTGVNWQIKNE--TLI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA  +V +        S+++P K++ E+ ++L    + V++ ++  ++    
Sbjct: 176 CVATDSHRLARRKVQLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSL- 290
             +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V+  + 
Sbjct: 236 GDVLFFSRLLEGNYPDTSRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVVRFEIL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ ++P++GK  E + V       + I F+ KY++E +  I   +     VV +
Sbjct: 296 GHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQD-----VVIQ 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    D+            +++P+R
Sbjct: 351 FTGAMRPFILRSVHDDAI---------LQLILPVR 376


>gi|329938637|ref|ZP_08288033.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus
           M045]
 gi|329302128|gb|EGG46020.1| DNA polymerase III subunit beta [Streptomyces griseoaurantiacus
           M045]
          Length = 376

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 166/390 (42%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGALSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+PS
Sbjct: 61  VEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  + V++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFASAVQQVATAAGRDDTLPVLTGVRIEIEGDSVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235
            AV E     +   + ++ +VP K + +  + L+S D  +         E  I       
Sbjct: 174 FAVREFLWKPENPDISAVALVPAKTLQDTAKALTSGDQVILALAGSGAGEGLIGFEGAGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     L
Sbjct: 234 RTTTRLLEGDLPKYKTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + D  +A+E ++       + I FN  +LL+ +  I S             +S  
Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + GK      + +      Y++MP+R+
Sbjct: 348 PALLSGK---PALDAEADEAYKYLIMPVRL 374


>gi|299135925|ref|ZP_07029109.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8]
 gi|298602049|gb|EFI58203.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX8]
          Length = 389

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 197/387 (50%), Gaps = 18/387 (4%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +ITV R+++L  L  A  ++ERK TIP+  + L +A+D  L I A+  +  +  +  A V
Sbjct: 18  EITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASDEKLTITATDLDQSLKTSCVAKV 77

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G+ T+ A  L+D ++ L +G       +N     V I  G SN  +     + FP  
Sbjct: 78  KKAGACTIPARKLFDYIKLLPEGDISIKLMDNH---WVQIRAGRSNTKMVGMARANFPQV 134

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E   V  F++ ++ LKN++ +T FA++ EE RY LNG    +  E   +  VATDGHRL
Sbjct: 135 PEFPEVGVFKINAASLKNMIAKTIFAISNEESRYTLNGALLVLKAES--MAMVATDGHRL 192

Query: 182 AVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           A  E   + +  I+     ++PRKA+ E+  +L + ++  V+ +  E  +   I    ++
Sbjct: 193 AHIEKLGEALEGISGEKKTLIPRKALAELSGLLGASETDFVEFADDEQSLFFRIGGRVLT 252

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R + G+FPNY+ V+P  N K + V   +L  ++ RV+  +  R  A+K+ L  ++L ++
Sbjct: 253 SRKLTGQFPNYEAVLPRDNTKFVIVRSEDLMSSIQRVAQFADERSGAIKIRLEQNELKLS 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + D G++ + +   YN  P+ + FN  YL++ +        V  EV      + S+  
Sbjct: 313 AQSTDAGESEDIIETPYNYDPLVVGFNSSYLVDFLRATG----VTGEVRLEFKDAQSAGQ 368

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R +D       +  V   Y+LMPMRI
Sbjct: 369 MRPEDG------NEDVKYRYILMPMRI 389


>gi|183980037|ref|YP_001848328.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M]
 gi|183173363|gb|ACC38473.1| DNA polymerase III (beta chain) DnaN [Mycobacterium marinum M]
          Length = 402

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 88/401 (21%), Positives = 171/401 (42%), Gaps = 31/401 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL  +D  L I     E+     +PA +
Sbjct: 14  KFRLVRESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G++ VS  LL DI R L +     +      G  V ++ G++ F L +    ++P+ 
Sbjct: 74  ASPGTVLVSGRLLSDITRALPNKPVDFYVD----GNRVALTCGNARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +   A   ++    L GI   I+ E  K+   ATD  RL
Sbjct: 130 PTLPED-TGTLPAELFSEAIGQVAIAAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  +++VP K +GE  +  +   S V++SL        +  + ++ +
Sbjct: 187 AVRELTWNALSPDIEAAVLVPAKTLGEAAKANTDG-SEVRLSLGAGMGVGKDGLLGISGD 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +      +   L +A+  V++++  R   V++  +  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVA-DRGAQVRMEFADG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL++ + ++ S     + V F   + 
Sbjct: 305 MLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGK---------DKDSKNNKDNKVNAFYVLMPMRI 385
                +R             D         +  Y+LMP+R+
Sbjct: 360 GKPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRL 400


>gi|94676682|ref|YP_588601.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
 gi|94219832|gb|ABF13991.1| DNA polymerase III, beta subunit [Baumannia cicadellinicola str. Hc
           (Homalodisca coagulata)]
          Length = 370

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 129/389 (33%), Positives = 208/389 (53%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +L+ L      +  ++ +P+  H+LLQ  +  L +  +  EIEI   I  +
Sbjct: 1   MKFTIERKYLLKPLQQVSSRLSGRHQLPILTHLLLQVTENYLILTGTNLEIEIVAKITIN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G I V A  L+DI R L + A I+   E   GT + +  G S F L + P + FP
Sbjct: 61  KVDKIGIIMVCARKLFDICRSLPEDALINITLE---GTVMLVIAGRSRFSLMTLPATNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E    F L    LK +++ T F+MA +++RY LNG+ F I  ++L+   VATDGH
Sbjct: 118 KIADGENQIVFNLPLDTLKKVIQSTQFSMAHQDVRYSLNGLLFEITGKELR--TVATDGH 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLS 236
           RLA   + I   +     SIIVPRK V E+LRIL     D+ VK+ +  + I + I +  
Sbjct: 176 RLAACTIYINVLKQLPYCSIIVPRKGVIELLRILDLDYGDNMVKLQICSNNIRIYISNYI 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +  LI+G FP+Y +V+P + +K L+V    ++QA+ RV+I+S+ + + V+L L  ++L 
Sbjct: 236 FTSNLIEGNFPDYHSVLPKNVNKILKVRRDLIKQALTRVAILSNDKFRCVRLYLRKNQLK 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T  N +  +A E ++V Y    +++ FN  Y+L+I+  +       D V    ++  SS
Sbjct: 296 ITAKNLEQEEAEEILDVSYEGPEIEVSFNVNYILDILGILKC-----DTVRLLFNNEASS 350

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V I         +      + Y++MPMR+
Sbjct: 351 VQI---------DDCMNPMSIYIVMPMRM 370


>gi|312888869|ref|ZP_07748431.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM
           18603]
 gi|311298610|gb|EFQ75717.1| DNA polymerase III, beta subunit [Mucilaginibacter paludis DSM
           18603]
          Length = 374

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 178/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L      +     +P+  + L +  D  L I A+  +  +T ++   
Sbjct: 1   MRFIVSTSTLLKQLQAVSGALSSSTVLPILENFLFEIKDSNLTISATDLQTSMTTSLSVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + + +L D ++ L +        +     E  I+ GD  + L      +FP 
Sbjct: 61  AKENGRVAIPSRILLDTLKSLPEQPIAFSVDDKTFAIE--INAGDGKYKLSGENGDDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L +SVL   + +T FA++ +E+R  + G+F  ++   L    VATD H+
Sbjct: 119 IPVVENASSVNLPASVLAEAINKTIFAVSNDELRPAMTGVFCQLSTTSLTF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L        A+ A   S I+P+KA+  +   L S ++SV V  + +       ++++  R
Sbjct: 177 LVRYRRK-DAKAAGTTSFILPKKALNLLKSSLPSDETSVAVEYNNTSAFFKFGNINLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++      ++ RV+I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPQTNPNKLLIDRQAFLGSLSRVAIYANKTTHQVRLKINGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E +   Y    M+I FN ++L+E++ N+ S      EV   + + N +  +
Sbjct: 296 DIDFANEAHERLTCQYEGDDMEIGFNARFLIEMLKNLGSA-----EVSLEMSTPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  D         +   ++MP+ +
Sbjct: 351 LPQGGD------ENEDVLMLVMPVML 370


>gi|307152245|ref|YP_003887629.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822]
 gi|306982473|gb|ADN14354.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822]
          Length = 393

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 101/407 (24%), Positives = 187/407 (45%), Gaps = 38/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK T  +SD+   L      +  + T P+  +VL  A    GL+ + A    + I  +  
Sbjct: 1   MKFTCSQSDLNANLSLVRSAVPNRPTHPILGNVLFVADTEKGLISLTAFDLSLGIRTSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL----GTEVNISHGDSNFYLQSFP 114
           A+V+  GSIT++A LL DIV +L +G      +E +      ++V I      F L+   
Sbjct: 61  ANVEEDGSITLAAKLLNDIVSRLPEGEITITLEEEDDGEEEQSKVTIESVSGRFQLRGMK 120

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             +FP     E V    L  S L   +  + FA +T+E +  L G+     ++ L+    
Sbjct: 121 ADDFPELPTIENVEPVRLPVSALTEGLRGSLFAASTDETKQVLTGVHLSGLQDSLEF--A 178

Query: 175 ATDGHRLAVAEVDIVAQIAKM------------PSIIVPRKAVGEILRILSSKDSS--VK 220
           ATDGHRLAV +        +              +I +P KA+ E+ RI++    +  V 
Sbjct: 179 ATDGHRLAVVQTPTQQTTEEEDSTPQPESNLEGFAITIPAKALRELERIMTMHKETEAVA 238

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + + E+++   + S  ++ R ++G +PNY+ +IP    +   +    L  +++RV++++ 
Sbjct: 239 LYVDEAQVIFELGSQRLTSRKLEGAYPNYEQLIPHQFSRSATLERKRLLSSLERVALLAD 298

Query: 281 VRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +   VK +L     +L ++V++ D+G A ESM+   +    +I FN KYL++ +  + +
Sbjct: 299 QKNNLVKFTLAEEKGQLILSVESQDLGSARESMDAQISGESGEIAFNVKYLMDGLKALGA 358

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +L+     V                +   Y++MP++I
Sbjct: 359 A-----EIQMQLNQEKQPVIFTP---------LGGLKMTYLVMPVQI 391


>gi|149191877|ref|ZP_01870111.1| DNA polymerase III subunit beta [Vibrio shilonii AK1]
 gi|148834269|gb|EDL51272.1| DNA polymerase III subunit beta [Vibrio shilonii AK1]
          Length = 320

 Score =  316 bits (809), Expect = 5e-84,   Method: Composition-based stats.
 Identities = 108/340 (31%), Positives = 193/340 (56%), Gaps = 21/340 (6%)

Query: 47  SGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGD 105
           +  E+E+   +    +   GS+TV +    DI R L D + I+   E   G  V +  G 
Sbjct: 1   TDLEVELVSKVTLESEFEAGSVTVPSRKFLDICRGLPDDSTITIVLE---GDRVQVRSGR 57

Query: 106 SNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165
           S F L + P S+FP+ ++ +   +  +  + LK+L+E+T F+MA +++RYYLNG+ F ++
Sbjct: 58  SRFSLSTLPASDFPNIEDWQQEVAVTVTQAELKSLIEKTQFSMANQDVRYYLNGMLFELD 117

Query: 166 EEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE 225
           +  L+  +VATDGHR+AVA V +         IIVPRK V E+ ++L + +  V + +  
Sbjct: 118 QNTLR--SVATDGHRMAVALVSLEGSF-DNKQIIVPRKGVQELSKLLDAPEQPVTLQIGS 174

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           S I   + +   + +L+DG FP+Y+ V+P + DK L  NC  LRQA  R +I+S+ + + 
Sbjct: 175 SNIRAEVNNFVFTSKLVDGRFPDYRRVLPQNTDKTLEANCDELRQAFSRAAILSNEKFRG 234

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V+++L  +++ +T +NP+  +A E ++V +    ++I FN  Y+L++++ +       D+
Sbjct: 235 VRVNLDQNEMRITANNPEQEEAEEMLDVEFQGDALEIGFNVSYVLDVLNTLRC-----DQ 289

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   + ++N+S  I   + DS         A YV+MP+R+
Sbjct: 290 VRISMSNANASALIENSEDDS---------AMYVVMPIRL 320


>gi|298369734|ref|ZP_06981051.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str.
           F0314]
 gi|298282291|gb|EFI23779.1| DNA polymerase III, beta subunit [Neisseria sp. oral taxon 014 str.
           F0314]
          Length = 367

 Score =  316 bits (809), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ER++T+P+  +VLL++++G   I A+  EI+I  A P S  
Sbjct: 4   LQADRDSLLKPLQAVTGIVERRHTLPILSNVLLESSNGQTNILATDLEIQINTAGPESQT 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L + A +S    +     + +  G S F LQ+ P  +FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPESAIVSL---DWADNRLTLKAGKSRFALQTLPAEDFPLMS 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
               V + F L     KN++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGHDVSTAFSLTQETFKNMLSQVQYSMAVQDIRYYLNGLLMQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A++ K   +I+PRK V E+ ++L++    + V L ++++       ++  ++
Sbjct: 179 AYATSQIEAELPKTE-VILPRKTVLELFKLLNNPSEQITVELLDNQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   V+ T+   A++R +I+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFLVSRTDFLGALERAAILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ N+ +     D++      +N S     
Sbjct: 298 NEQEEAREELEIAYQGSELEVGFNIGYLMDVLRNVHA-----DDMQLAFGDANRSTLFTI 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|229035148|ref|ZP_04189094.1| DNA polymerase III subunit beta [Bacillus cereus AH1271]
 gi|228728214|gb|EEL79244.1| DNA polymerase III subunit beta [Bacillus cereus AH1271]
          Length = 379

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKIVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN   T+  I+ G S F L  
Sbjct: 61  DDGKEIVEVAQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I     +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|49476685|ref|YP_034362.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118475780|ref|YP_892931.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al
           Hakam]
 gi|196036084|ref|ZP_03103484.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|196041972|ref|ZP_03109259.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
 gi|196045398|ref|ZP_03112629.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|218901208|ref|YP_002449042.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228918102|ref|ZP_04081630.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228930496|ref|ZP_04093496.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228931508|ref|ZP_04094418.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228949212|ref|ZP_04111480.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229094601|ref|ZP_04225668.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42]
 gi|229124993|ref|ZP_04254167.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201]
 gi|229187719|ref|ZP_04314855.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1]
 gi|254724148|ref|ZP_05185933.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055]
 gi|301051743|ref|YP_003789954.1| DNA polymerase III subunit beta [Bacillus anthracis CI]
 gi|49328241|gb|AAT58887.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|118415005|gb|ABK83424.1| DNA polymerase III, beta subunit [Bacillus thuringiensis str. Al
           Hakam]
 gi|195991251|gb|EDX55219.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|196023605|gb|EDX62281.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|196027227|gb|EDX65847.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
 gi|218537161|gb|ACK89559.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228595787|gb|EEK53471.1| DNA polymerase III subunit beta [Bacillus cereus BGSC 6E1]
 gi|228658494|gb|EEL14160.1| DNA polymerase III subunit beta [Bacillus cereus 95/8201]
 gi|228688848|gb|EEL42679.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-42]
 gi|228810495|gb|EEM56848.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228828151|gb|EEM73875.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228829215|gb|EEM74852.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228841582|gb|EEM86698.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|300373912|gb|ADK02816.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis
           str. CI]
          Length = 379

 Score =  315 bits (808), Expect = 6e-84,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I   + +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|1706497|sp|P52023|DPO3B_SYNE7 RecName: Full=DNA polymerase III subunit beta
 gi|974615|gb|AAA75109.1| DNA polymerase III beta subunit [Synechococcus elongatus PCC 7942]
          Length = 375

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 194/392 (49%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  +   PV  +VLL A+ G   L + A    + I  +  
Sbjct: 1   MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLTAFDLSLGIQTSFA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V+  G+IT+ A LL DIV +L + + ++    +   T   +S G   + ++     EF
Sbjct: 61  AQVERSGAITLPAKLLNDIVSRLPNDSDVTLEDNDAAAT---LSVGSGQYQMRGISADEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   + +L++S L   +  T FA + +E +  L G+   +  + L+    ATDG
Sbjct: 118 PELPLVQSQEALQLSASALIEGLRGTLFATSGDETKQILTGVHLKVQPDGLEF--AATDG 175

Query: 179 HRLAVAEVD-IVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235
           HRLAV + +   A  A   ++ VP +A+ ++ R+++    D ++ +   + +        
Sbjct: 176 HRLAVVKTENAAATPATEFAVTVPSRALRDLERMIAIRGSDEAIALYHDQGQTVFQWGDQ 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSD 293
            ++ R +DG++PNY  +IP   ++ + V+   L  A++R+++++  +  A++LSL   ++
Sbjct: 236 YLTSRTLDGQYPNYGQLIPREFNRNVAVDRKRLLAALERIAVLADQQNNAIRLSLDPENN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L + VD  D+G   E++       P++I FN +YL E +  +++ +     +  +L+S+
Sbjct: 296 RLALAVDAQDVGSGQEAVPAEIIGEPLEIAFNVRYLAEGLKALNTTD-----IQIQLNSN 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S V +              V   Y++MP+++
Sbjct: 351 TSPVVLSPLGP---------VKITYLVMPIQL 373


>gi|300866651|ref|ZP_07111338.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506]
 gi|300335360|emb|CBN56498.1| DNA polymerase III subunit beta [Oscillatoria sp. PCC 6506]
          Length = 387

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 102/403 (25%), Positives = 191/403 (47%), Gaps = 36/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLL A++    + +      + I  +  
Sbjct: 1   MKLICTQSDLNSNLSLVSRAVPSRPTHPVLANVLLVADEKTQRVSLTGFDLSLGIRTSFA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A VD  GS T+ A LL DI+ +L DG       ++       ++     + ++     EF
Sbjct: 61  AQVDEGGSFTLPAKLLNDIISRLPDGEI--SLDDDAGEAIATVTSSSGKYTVRGMGPEEF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E E      L    L   ++ T FA + +E +  L G+   + ++ L+    ATDG
Sbjct: 119 PELPEIEGGELINLPPEALIAGLKGTLFATSPDETKQVLTGVHLKVQQDSLEF--AATDG 176

Query: 179 HRLAVAEVD------------IVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLS 224
           HRLAV E                 + + +  I VP KA+ EI +++++      V + L 
Sbjct: 177 HRLAVVETAKVSDREYDEASLPTQESSAIFEITVPAKALREIEKMVAAGQSSEPVALHLD 236

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           + +I        ++ R ++G++PNY+ ++P S ++ + +   +L  AV+R+++++  +  
Sbjct: 237 QGQIVFEWADQRLTTRTLEGQYPNYRQLLPRSFERLITLERRSLLAAVERIAVLADQKNN 296

Query: 285 AVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +K S+   + K+ ++VD  D+G   ESM+   +   +DI FN KYL++I+    S    
Sbjct: 297 ILKCSIDAENQKVTLSVDAKDVGSGTESMSAQISGESIDIAFNVKYLIDILKTAPS---- 352

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             E+  +L+ + + V IR             VNA +++MP+++
Sbjct: 353 -PEIQMQLNEATAPVIIRP---------LGGVNATFLVMPVQL 385


>gi|239930174|ref|ZP_04687127.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
 gi|291438516|ref|ZP_06577906.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672]
 gi|291341411|gb|EFE68367.1| DNA polymerase III, beta chain [Streptomyces ghanaensis ATCC 14672]
          Length = 376

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 165/390 (42%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEDGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEEGTVLVSGRLLADISRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  + V++   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMPNA-TGTVPGEVFSSAVQQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235
            AV E     +     ++ +VP K + +  + L+S D  +         E  I       
Sbjct: 174 FAVREFLWKPENPDASAVALVPAKTLLDTAKALTSGDQVILALSGSGAGEGLIGFEGAGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL++G+ P Y+ + P   +    +      +AV RV++++  R   V+LS     L
Sbjct: 234 RTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + D  +A+E ++       + I FN  +LL+ +  I S             +S  
Sbjct: 293 ILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + G+      + +      Y++MP+R+
Sbjct: 348 PALLSGR---PAVDAEADEAYKYLIMPVRL 374


>gi|148238337|ref|YP_001223724.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7803]
 gi|147846876|emb|CAK22427.1| DNA polymerase III beta subunit [Synechococcus sp. WH 7803]
          Length = 389

 Score =  315 bits (808), Expect = 7e-84,   Method: Composition-based stats.
 Identities = 85/403 (21%), Positives = 186/403 (46%), Gaps = 34/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++P
Sbjct: 1   MKLVCSQTELNSALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASVD  G++T+ A L  +IV +L   + I+   ++  G +V ++    ++ ++  P  +F
Sbjct: 61  ASVDTSGAVTLPARLFGEIVSRLSSDSPITLTTDD-SGEQVELTSLSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   +  T FA +++E +  L G+      +  +L A +TDG
Sbjct: 120 PDLPLVENGTAVKLDPAALVRALRSTLFASSSDEAKQLLTGVHLRF--DQTRLEAASTDG 177

Query: 179 HRLAVAEVD------------IVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLS 224
           HRLAV  VD              A+ +   ++ +P +++ E+ R+++       V +   
Sbjct: 178 HRLAVLSVDDALQDAIANEEAPDAEGSAGLAVTLPARSLREVERLMAGWKGSDPVSLFFE 237

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
             ++ +      ++ R ++G +PNY+ +IP S  + + ++      +++R+++++     
Sbjct: 238 RGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTMALDRRAFVASLERIAVLADQHNN 297

Query: 285 AVKL--SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            V++    S   + ++ D  D+G   ES+        + I FN +Y+L+ +  + +    
Sbjct: 298 VVRIISDPSKGLIQISADAQDVGSGSESLPAQIEGEEVQIAFNVRYVLDGLKAMDA---- 353

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +V   ++  +   +   D              Y++MP++I
Sbjct: 354 -ERIVLSCNAPTTPAILSPADD--------GAGLTYLVMPVQI 387


>gi|42779083|ref|NP_976330.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987]
 gi|42734998|gb|AAS38938.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
          Length = 379

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 191/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  ENGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I     +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 GIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|218437347|ref|YP_002375676.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424]
 gi|218170075|gb|ACK68808.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424]
          Length = 394

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 99/408 (24%), Positives = 185/408 (45%), Gaps = 39/408 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK T  +SD+   L    R +  + T P+  +VL  A    GL+ + A    + I  +  
Sbjct: 1   MKFTCSQSDLNTNLSLVSRAVSSRPTHPILGNVLFVADLEQGLISLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL-----GTEVNISHGDSNFYLQSF 113
           A+++  G+IT+ A LL DIV +L +G      +  E       T+V+I      F L+  
Sbjct: 61  ATIEEEGTITLPAKLLNDIVSRLPEGEITITLEPEEDEEDQEHTKVSIESVSGRFQLRGM 120

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              +FP       V   +L  S L   ++ + FA +T+E +  L G+ F    +   L  
Sbjct: 121 KADDFPELPTIANVDPLKLPISALTEGLKGSLFAASTDETKQVLTGVHF--AGQQDSLEF 178

Query: 174 VATDGHRLAVAEVDIV------------AQIAKMPSIIVPRKAVGEILRILSSKDSS--V 219
            ATDGHRLAV +                +   +  +I +P +A+ E+ RI+     +  +
Sbjct: 179 AATDGHRLAVVQTPTQETTEEEQTPPEPSSNLEGFAITIPARALRELERIMGMHKETDAI 238

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            + + E ++   + S  ++ R ++G +PNYQ +IP    +   +    L  +++RV++++
Sbjct: 239 TLYVDEGQVIFELGSQRLTSRKLEGAYPNYQQLIPRQFSRSATLERKRLLSSLERVALLA 298

Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
             +   VK +LS    +L ++V++ D+G A ES+         +I FN KYL++ +  + 
Sbjct: 299 DQKNNLVKFTLSSEKGQLILSVESQDLGSARESIPAEIIGESGEIAFNVKYLMDGLKALP 358

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +     +  +L+     V                +   Y++MP++I
Sbjct: 359 ASD-----IQMQLNQEKQPVIFTP---------LGGLKMTYLVMPVQI 392


>gi|126651996|ref|ZP_01724188.1| DNA polymerase III subunit beta [Bacillus sp. B14905]
 gi|126591265|gb|EAZ85374.1| DNA polymerase III subunit beta [Bacillus sp. B14905]
          Length = 378

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 176/395 (44%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +LE L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFDILRDRLLEGLNDVMKAVSSKTTIPILTGIKIDVTEEGIRLTGSDADITIQTFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI V A +  +IVRKL              G + +I  G S F+L  
Sbjct: 61  EDGQQIIHIAETGSIVVQARMFNEIVRKLPTNDVEIHVT---PGFQTHIRSGKSEFHLIG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   E      F + + +LK ++  T  A+AT E R  L G+ + I  E   L 
Sbjct: 118 SDAAEYPLLPELTEDQKFTIPADLLKTIIRETVLAVATSESRPVLTGVNWQIKNE--TLI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA  +V +        S+++P K++ E+ ++L    + V++ ++  ++    
Sbjct: 176 CVATDSHRLARRKVQLENLPEVEHSVVIPGKSLNELNKVLEDSTNLVQIVITSQQVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSL- 290
             +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V+  + 
Sbjct: 236 GDVLFFSRLLEGNYPDTTRLIPEEYQTNVTINGKSLLQAIDRASLVARGDRNNVVRFEIL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ ++P++GK  E + V       + I F+ KY++E +  I   +     VV +
Sbjct: 296 GHQAVEVSSNSPEIGKVQEEIPVESLEGEGLKISFSAKYMMEALKAIDGQD-----VVIQ 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    D+            +++P+R
Sbjct: 351 FTGAMRPFILRSVHDDAI---------LQLILPVR 376


>gi|163838771|ref|YP_001623176.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC
           33209]
 gi|162952247|gb|ABY21762.1| DNA polymerase III, beta chain [Renibacterium salmoninarum ATCC
           33209]
          Length = 408

 Score =  315 bits (807), Expect = 8e-84,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 177/386 (45%), Gaps = 18/386 (4%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  VER  + + +  A R +  +  +PV   +LL+A+ G L + +   EI     IPA +
Sbjct: 36  KFRVERDVLNDAVSWAARALSPRPPVPVLSGLLLKASAGTLSLSSFDYEISARLEIPADI 95

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G+I VS  LL DI R L         + +  G++V ++  +S F L + PE+++P  
Sbjct: 96  AEEGTILVSGRLLADICRSLPSAP----VEVSTDGSKVILTCRNSRFNLATMPEADYPEL 151

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                + S  +A       V +   A + ++    L G+   I ++ + L  +ATD +RL
Sbjct: 152 PALPKI-SGTVAGDAFAKAVTQVTVAASKDDTLPILAGVKVEIEDDLITL--LATDRYRL 208

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           A+ E++    +  +  S +V  K + E+ + L    + ++ +S     I         + 
Sbjct: 209 AMRELNWKPAVPGISTSALVKAKTLSEVAKTLGGAGEINISLSEDSELIGFESGGRRTTS 268

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+DG++P  +++ P +      V  + L +AV RV++++  R   V+L+ +  ++ +  
Sbjct: 269 LLVDGDYPKIRSLFPENTPIHATVETSALVEAVRRVALVA-ERNTQVRLAFTDGQVGLDA 327

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
              +  +A E++        + + FN  YL E ++   S       V F   S+     +
Sbjct: 328 GTGEDAQASEALEAALTGEEITVAFNPHYLSEGLNAFESK-----YVRFSFTSAPKPAMM 382

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D     + D++ +  Y++MP+R+
Sbjct: 383 TAQDS---IDGDDQDHYRYLVMPVRL 405


>gi|88809363|ref|ZP_01124871.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805]
 gi|88786582|gb|EAR17741.1| DNA polymerase III subunit beta [Synechococcus sp. WH 7805]
          Length = 389

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 87/403 (21%), Positives = 187/403 (46%), Gaps = 34/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++P
Sbjct: 1   MKLVCSQTELNTALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLSLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASVD  G++T+ A L  +IV +L   + I+   ++    +V ++    ++ ++  P  +F
Sbjct: 61  ASVDTSGAVTLPARLFGEIVSRLSSDSPITLATDDT-SEQVELTSLSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L  + L   +  T FA +++E +  L G+      +  +L A +TDG
Sbjct: 120 PDLPLVENGTAIKLDPAALVRALRSTLFASSSDEAKQLLTGVHLRF--DQTRLEAASTDG 177

Query: 179 HRLAVAEVD------------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLS 224
           HRLAV  VD              A  +   ++ +P +++ E+ R+++    +  V +   
Sbjct: 178 HRLAVLSVDDALKDAIAADDSAEADESAALAVTLPARSLREVERLMAGWKGNDPVSLFFE 237

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
             ++ +      ++ R ++G +PNY+ +IP S  + + ++      +++R+++++     
Sbjct: 238 RGQVVVLAADQMVTSRTLEGTYPNYRQLIPESFSRTIGLDRRAFVASLERIAVLADQHNN 297

Query: 285 AVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            V++S   S   + ++ D  D+G   ES+        + I FN +Y+L+ +  +      
Sbjct: 298 VVRISSDPSKGLIQISADAQDVGSGSESLPAQIEGDEVQIAFNVRYVLDGLKAMDG---- 353

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            D +V   ++  +   +  +D  S           Y++MP++I
Sbjct: 354 -DRIVLSCNAPTTPAILSPEDDGS--------GLTYLVMPVQI 387


>gi|149275921|ref|ZP_01882066.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39]
 gi|149233349|gb|EDM38723.1| DNA polymerase III, beta-subunit [Pedobacter sp. BAL39]
          Length = 374

 Score =  315 bits (807), Expect = 9e-84,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 185/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  DG L I A+  +  +T ++   
Sbjct: 1   MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGSLTISATDLQTSMTTSLAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V A +L D ++ L D      F  ++    + IS GD  + L      +FP 
Sbjct: 61  SKEGGKVAVPAKILLDTLKTLPDQPV--SFNIDDSSFSIEISAGDGKYKLSGENGDDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L +SVL   + +T FA++ +E+R  + G+F  ++E+++    VATD H+
Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSNDELRPAMTGVFCQLSEQNITF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    + ++  K  S I+P+KA+  +   L S D +V V  + +      +++++  R
Sbjct: 177 L-VRYRRMDSKGDKSSSFILPKKALTLLKAALPSTDVNVSVDYNATSAFFKFDNINLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++       + RV I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E ++  Y    ++I FN ++L+E++ N+S      +EV   L + N +  +
Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNARFLIEMLSNLSG-----EEVTLELSTPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +        D   N   ++MP+ +
Sbjct: 351 IPQ------TNDENENVLMLVMPVML 370


>gi|87123348|ref|ZP_01079199.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917]
 gi|86169068|gb|EAQ70324.1| DNA polymerase III, beta chain [Synechococcus sp. RS9917]
          Length = 390

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 93/404 (23%), Positives = 189/404 (46%), Gaps = 35/404 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++P
Sbjct: 1   MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSLP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G++T+ A LL +IV +L   + ++   ++  G +V ++     + ++  P  EF
Sbjct: 61  ASVESSGAVTLPARLLGEIVSRLSSESPVTLASDD-AGEQVELTSLSGCYQMRGMPADEF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +L ++ L   +  T FA + +E +  L G+    +     L A +TDG
Sbjct: 120 PELPLVENGTALKLEAAALARALRATLFASSADEAKQLLTGVHLRFSGS--HLEAASTDG 177

Query: 179 HRLAVAEV-------------DIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSL 223
           HRLAV  V             +     A   S+ +P +++ E+ R+++S   D  V +  
Sbjct: 178 HRLAVLAVTDALREAPTLEGGEANDGEAADLSVTLPARSLREVERLVTSWKGDDPVTLFY 237

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
              ++ +      ++ R ++G +PNY+ +IP S  +   ++      A++RV++++    
Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDSFSRVFELDRRGFVAALERVAVLADQHN 297

Query: 284 QAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             V++S   +   + ++ D  D+G   ES+    +  P+ I FN +Y+L+ +  + +   
Sbjct: 298 NVVRISSEPESGLVQISADAQDVGSGSESLASDLSGEPVQIAFNVRYVLDGLKAMEA--- 354

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             D +  R ++  +   +   D DS           Y++MP++I
Sbjct: 355 --DRIKLRCNAPTTPAVLSAADDDS--------GFTYLVMPVQI 388


>gi|206975877|ref|ZP_03236788.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217957583|ref|YP_002336125.1| DNA polymerase III subunit beta [Bacillus cereus AH187]
 gi|222093776|ref|YP_002527823.1| DNA polymerase iii subunit beta [Bacillus cereus Q1]
 gi|229142239|ref|ZP_04270763.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26]
 gi|229199686|ref|ZP_04326329.1| DNA polymerase III subunit beta [Bacillus cereus m1293]
 gi|206745971|gb|EDZ57367.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217065811|gb|ACJ80061.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|221237821|gb|ACM10531.1| DNA polymerase III, beta subunit [Bacillus cereus Q1]
 gi|228583781|gb|EEK41956.1| DNA polymerase III subunit beta [Bacillus cereus m1293]
 gi|228641257|gb|EEK97564.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST26]
 gi|324323996|gb|ADY19256.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 379

 Score =  315 bits (807), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  ENGKEIVEVNQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I     +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 GIATDSHRLALRKAKIEGIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|242243254|ref|ZP_04797699.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144]
 gi|242233203|gb|EES35515.1| DNA polymerase III subunit beta [Staphylococcus epidermidis W23144]
 gi|319399913|gb|EFV88159.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           FRI909]
 gi|329735734|gb|EGG72015.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU028]
          Length = 377

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +  +  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLEDES-ENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +N        + I FN KY+++ +  I      +DEV    
Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375


>gi|224827187|ref|ZP_03700282.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002]
 gi|224600580|gb|EEG06768.1| DNA polymerase III, beta subunit [Lutiella nitroferrum 2002]
          Length = 368

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 194/385 (50%), Gaps = 22/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG-AIPASV 61
           +  ER  +L+ L     I+ER++T+P+  +VL++  DG +   A+  EI+IT  +     
Sbjct: 4   LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKDGAVGFLATDLEIQITTASAETLP 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
                +T SA  L DI+R +   + +S  +++     + +  G S F LQ+ P  +FP  
Sbjct: 64  GESFRLTTSAKKLQDILRAIPGNSTVSLEQQD---NRLTLKAGKSRFNLQTLPAEDFPLL 120

Query: 122 K-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +F L    LK L+ +  ++MA ++IRYYLNG+    ++  ++L  VATDGHR
Sbjct: 121 SVNGTPEATFSLPQKELKRLISQVQYSMAVQDIRYYLNGLLMQTDDNQVRL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  +I   + K   +I+PRK + E+ ++L   D  + + +  +++     S  +  +
Sbjct: 179 LAFAAAEIDTSLPK-AEVILPRKTIIELYKLLQDSDEPITIEVLANQVRFTFGSTVIISK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG+FP+Y  VIP  NDK   ++      A+ R +I+++ + + V+L L    L +   
Sbjct: 238 VVDGKFPDYNRVIPLDNDKLFLIDRLTFLHALQRAAILANEKFRGVRLVLKPGSLSILCT 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + Y    ++I FN  YLL+++ N+ +     + +      +N S  + 
Sbjct: 298 NSEQEEAEEELEIDYGGGELEIGFNINYLLDVLTNLPA-----ETLQLAFGDANRSTLVT 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D              Y++MPMRI
Sbjct: 353 IPD---------YSQFKYIVMPMRI 368


>gi|255533120|ref|YP_003093492.1| DNA polymerase III subunit beta [Pedobacter heparinus DSM 2366]
 gi|255346104|gb|ACU05430.1| DNA polymerase III, beta subunit [Pedobacter heparinus DSM 2366]
          Length = 374

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 185/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  DG L I A+  +  +T ++P  
Sbjct: 1   MRFIVSTSTLLKHLQTVNGASSSSTVLPILENFLFEIKDGNLTISATDLQTSMTTSLPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V A +L D ++ L D      F  ++    + IS GD  + L      +FP 
Sbjct: 61  SKEGGKVAVPARILLDTLKTLPDQPI--SFNIDDSTFSIEISAGDGKYKLSGENGDDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L +SVL   + +T FA++++E+R  + G+F  ++  D  +  VATD H+
Sbjct: 119 IPVVENASSVNLPASVLTEAITKTIFAVSSDELRPAMTGVFCQLS--DQHITFVATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    + ++  K  S I+P+KA+  +   L S D +V V  + +      E++++  R
Sbjct: 177 L-VRYRRMDSKADKSSSFILPKKALTLLKAALPSTDINVSVDYNATSAFFKFENINLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++       + RV I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPANNPNKLVIDRALFLNTLRRVVIFANKTTHQVRLKINGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E ++  Y    ++I FN K+L+E++ N+S      +EV   L + N +  +
Sbjct: 296 DLDFANEAHERLSCQYEGEDLEIGFNAKFLIEMLSNLSG-----EEVTLELSTPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +        D   +   ++MP+ +
Sbjct: 351 IPQ------TNDENEDVLMLVMPVML 370


>gi|153875362|ref|ZP_02003200.1| DNA polymerase III, beta chain [Beggiatoa sp. PS]
 gi|152068174|gb|EDN66800.1| DNA polymerase III, beta chain [Beggiatoa sp. PS]
          Length = 375

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 118/394 (29%), Positives = 208/394 (52%), Gaps = 28/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R ++L  L     ++E++ T+P+  + L+   D  L   A+  E+EI  ++P S
Sbjct: 1   MYFEISRKELLTPLKMITGVVEQRQTLPILANTLIDVTDNTLHFTATDAEVEIACSLPLS 60

Query: 61  VDV-----CGSITVSAHLLYDIVRKLQDG--AQISFFKENELGTEVNISHGDSNFYLQSF 113
            D       G  T+ A   +DI R L D   A+I    E+E  ++  +  G S F LQ+ 
Sbjct: 61  SDNLGTDHEGKTTLPARKFFDICRALSDDKNAKIQVSIEDE-TSQAIVKAGKSKFKLQTL 119

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  +FP+  E +    F ++   LK+L+ +T F +A  ++RYYL G+   I+  D K+  
Sbjct: 120 PADDFPAGPEIDATAEFSISQFHLKDLLHKTAFCVAINDVRYYLTGLLLEIS--DGKISL 177

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNI 232
           + TDGHR+AVA+ D   +  +   +I+PRKAV E+ ++L+  + + V+VS  ++ I   +
Sbjct: 178 IGTDGHRMAVAQHDFEGE--ENAQVIIPRKAVLELSKLLADDEETSVEVSFDDNHIEFKL 235

Query: 233 -ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            +SL M  +LIDG FP++  VIP   +K +      L+QA+ R SI+S+ + + ++ +L+
Sbjct: 236 SDSLIMRSKLIDGNFPDWHAVIPSDPNKIVIAETAPLKQALTRASILSNEKYKGIRFTLT 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + L ++  N    +A E + V Y    +++ FN  Y+L+ I+ IS+       V     
Sbjct: 296 ENLLTISAKNAYQEEAEEIIEVEYTGEELEVGFNGIYILDAINVISTKT-----VQLAFV 350

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             NSS  I  +D +         ++ +++MPMR+
Sbjct: 351 DQNSSCLIMEEDNE---------DSKFIVMPMRL 375


>gi|319949430|ref|ZP_08023491.1| DNA polymerase III subunit beta [Dietzia cinnamea P4]
 gi|319436892|gb|EFV91951.1| DNA polymerase III subunit beta [Dietzia cinnamea P4]
          Length = 391

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 97/397 (24%), Positives = 164/397 (41%), Gaps = 29/397 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V R D  + +    R +  + ++P+   VLL+A D  L I     E     ++PA V 
Sbjct: 8   FRVTREDFADSVAWVARTLPSRPSVPILGGVLLEA-DSGLTISGFDYETSAQVSVPAEVS 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GS  VS  LL DI R L D              ++ I+ G + F L + P  ++P   
Sbjct: 67  EPGSTLVSGRLLADIARALPDRPVEVVVT----AQKMYITCGSAKFTLPTMPVEDYPQLP 122

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V +           V +   A   ++    L GI   I  E  ++  +ATD  RLA
Sbjct: 123 AMPEV-TGSAEVDAFSEAVGQVVVAAGKDDTLPMLTGIRMEI--EGTRVTLIATDRFRLA 179

Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234
           + E D           +++P KA+ E+ R        V +SL        E  + + +  
Sbjct: 180 IREFDWEPAREDVTVEVLIPAKALSEVTRSAGHG-GRVDLSLGAGSNVGAEGILGVLVSG 238

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP  + ++P  +     V    L QA+ RV++++  R   V+++ S  +
Sbjct: 239 QRTTTRLLDAEFPKVRQLLPPQHTSVAVVEVDALVQAIKRVALVA-DRGVQVRMAFSEGE 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++    D  +A ES+ V +   P+ I FN  YLL+ + +I S       V F     +
Sbjct: 298 LALSAGGDDAAQANESLPVDFVGEPLTIAFNPGYLLDGLGSIHSA-----RVAFGFTQPS 352

Query: 355 SSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
               +R   +       +      + +  Y+LMP+R+
Sbjct: 353 RPAVLRPAPEALPEPGADGAIAPVESDHTYLLMPVRL 389



 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 23/182 (12%), Positives = 66/182 (36%), Gaps = 17/182 (9%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F +      + V      + +      L G+    +     L     D      A+
Sbjct: 4   TDPTFRVTREDFADSVAWVARTLPSRPSVPILGGVLLEADSG---LTISGFDYE--TSAQ 58

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244
           V + A++++  S +V  + + +I R L   D  V+V ++  ++++   S   ++  +   
Sbjct: 59  VSVPAEVSEPGSTLVSGRLLADIARALP--DRPVEVVVTAQKMYITCGSAKFTLPTMPVE 116

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299
           ++P     +P   +           +AV +V + +           +++ +   ++ +  
Sbjct: 117 DYPQ----LPAMPEVTGSAEVDAFSEAVGQVVVAAGKDDTLPMLTGIRMEIEGTRVTLIA 172

Query: 300 DN 301
            +
Sbjct: 173 TD 174


>gi|260221775|emb|CBA30676.1| DNA polymerase III subunit beta [Curvibacter putative symbiont of
           Hydra magnipapillata]
          Length = 362

 Score =  314 bits (806), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 97/341 (28%), Positives = 181/341 (53%), Gaps = 8/341 (2%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VLL+     L++  S  EI+I        D
Sbjct: 4   LKATQDKVLSVLQSVAGIVERRHTLPILANVLLRKTGTSLQLTTSDLEIQIRTTAELGGD 63

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + T+ A  L DI+R +     +S        +++ +  G S F LQ+    +FP  
Sbjct: 64  TGSFTTTIGARKLIDILRTMPGDQTVSLES---SQSKIILKGGKSKFTLQTMQAEDFPLV 120

Query: 122 KEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +E   +   F +    LK+L+ +  FAMA  +IRYYLNGI F    + L L  VATDGHR
Sbjct: 121 QESASFGPVFSVPQKTLKDLLSQVSFAMAVHDIRYYLNGILFVAEGKQLSL--VATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A   +  ++ K   +I+PRK V E+ R+LS  + ++++  + ++     + +    +
Sbjct: 179 LAFASATLDVEVPKQE-VILPRKTVIELQRLLSDAEGAIEMQFANNQAKFTFDGMEFVTK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FP+Y  VIP ++   + +    L + + R +I++S + + V+L++    L +  +
Sbjct: 238 LVEGKFPDYNRVIPKNHKNSITLGREALLKTLQRTAILTSDKFKGVRLNIDPGSLRVASN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
           N +  +A++ +++ Y    ++I FN  YL++ + N+S D V
Sbjct: 298 NAEQEEAVDELDIDYGGDSIEIGFNVTYLIDALSNMSQDMV 338


>gi|152973856|ref|YP_001373373.1| DNA polymerase III subunit beta [Bacillus cereus subsp. cytotoxis
           NVH 391-98]
 gi|152022608|gb|ABS20378.1| DNA polymerase III, beta subunit [Bacillus cytotoxicus NVH 391-98]
          Length = 381

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 186/398 (46%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDSDISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  EDGKEIVEVSQSGSIVLQAKYFSEIVKKLPKD-IVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+    I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRTAKIEGHNISDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +     L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STFEQKMLEISSNSPEIGKVVEEVQCEKIDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + +S            +++P+R
Sbjct: 351 KISFTGAMRPFLIRTVNDNSI---------IQLILPVR 379


>gi|323487686|ref|ZP_08092944.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2]
 gi|323398420|gb|EGA91208.1| DNA polymerase III subunit beta [Planococcus donghaensis MPA1U2]
          Length = 378

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 178/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R  ++E L    + +  K TIP+   + +  +   + +  S  +I I   IPA 
Sbjct: 1   MKFEIKRERLVEGLNDVMKAVSSKTTIPILTGIKMDVSSEGMRLTGSDSDITIQTFIPAE 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            D          GSI + A +  +I+RKL          E     + +I  G S F+L  
Sbjct: 61  EDGEQIIQVTNGGSIVLQAKVFGEIIRKLPTNEV---EIEITGNFQTHIRSGKSEFHLIG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   + +    F + + +LK +   T FA+++ E R  L G+ + +   D +L 
Sbjct: 118 LDAMDYPQLPDIQDDRLFTIPADLLKTINRETVFAVSSSETRPVLTGVHWEVK--DGELV 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA  +  +        S+++P K++ E+ +IL     +V++ ++  ++    
Sbjct: 176 CVATDSHRLARRKTKLETLPEGEYSVVIPGKSLTELNKILDDTSEAVEIVMTNQQVLFKS 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           + +    RL++G +P+   +IP      + VN  +L QA+DR S+++   R   V+ S  
Sbjct: 236 KHILFFSRLLEGNYPDTSRLIPAEYKTTVTVNGRSLLQAIDRASLLAREERNNVVRFSAK 295

Query: 292 SDK-LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ ++P++GK  E +         + I F+ K++++ +  I   +     VV +
Sbjct: 296 EGTDVEVSSNSPEVGKVEEQLQAQSIEGEELKISFSAKFMMDALKAIDGQD-----VVIQ 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     ++    DS            +++P+R
Sbjct: 351 FTGAMRPFILKSALDDSI---------LQLILPVR 376


>gi|170761565|ref|YP_001785337.1| DNA polymerase III subunit beta [Clostridium botulinum A3 str. Loch
           Maree]
 gi|169408554|gb|ACA56965.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 367

 Score =  314 bits (805), Expect = 1e-83,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A L  +I+RKL +        E+     + I   +S F L      EFP+
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  + LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 PPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +        + ++P K + E+ +IL   + +V ++ + + I  +I    +  R
Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF +Y+++IP   + ++      L  +++R S+M+       VK   S+DK+ +T 
Sbjct: 234 LLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E + V      + I FN KYLL+++  +      DDEVV    SS S   I
Sbjct: 294 -NSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +         N  Y+++P+R+
Sbjct: 348 KNTELN---------NCTYLVLPVRL 364


>gi|223043416|ref|ZP_03613462.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14]
 gi|222443205|gb|EEE49304.1| DNA polymerase III, beta subunit [Staphylococcus capitis SK14]
          Length = 377

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVEISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +         + I FN KY+++ +  I      +DEV    
Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375


>gi|229083316|ref|ZP_04215678.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44]
 gi|228699991|gb|EEL52614.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-44]
          Length = 381

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  ENGKEIVEIAQSGSIILQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFQIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I +         ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIESHTISNEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ ++P++GK +E +         + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEEQMLELSSNSPEIGKVVEEVQCEKIEGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KISFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|229099917|ref|ZP_04230840.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29]
 gi|229100790|ref|ZP_04231610.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28]
 gi|229118980|ref|ZP_04248325.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3]
 gi|228664505|gb|EEL20001.1| DNA polymerase III subunit beta [Bacillus cereus Rock1-3]
 gi|228682629|gb|EEL36686.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-28]
 gi|228683532|gb|EEL37487.1| DNA polymerase III subunit beta [Bacillus cereus Rock3-29]
          Length = 381

 Score =  314 bits (805), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/398 (23%), Positives = 188/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S   I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDANISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  EDGKEIVEIGQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +  L 
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSE--LI 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I       A   ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADAFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQKMLEISSNSPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KISFTGAMRPFLIRTVNDDSITQ---------LILPVR 379


>gi|51891140|ref|YP_073831.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM
           14863]
 gi|51854829|dbj|BAD38987.1| DNA polymerase III beta subunit [Symbiobacterium thermophilum IAM
           14863]
          Length = 368

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 187/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + +  +   L    R +  KNTIPV   V L A  G L I+A+  E+ I    P  
Sbjct: 1   MKILISQESLNATLATVARAVSTKNTIPVLSGVYLSARGGELTIRATDMELAIEAVTPCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   + A    D++R++  G        +       +  G S + +  F   +FP+
Sbjct: 61  VISEGETVLPARYFADLIRRIPYGNIELSV--DYHNHVATLRWGRSQYVIHGFAADQFPT 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +   +F +  S+L++L+ +T FA   +E + +L G+ F + ++ L     ATDG R
Sbjct: 119 LPDVDGASAFTVKQSLLRDLLRQTTFAAGHDESKPWLTGVLFKLRDDLLT--GTATDGIR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +A AE           S+I+P +++ E+ R+L+  +DS V V+++ +++  ++ +  +  
Sbjct: 177 IAYAEAAAENAQGHSFSVIIPSRSLNEVTRLLTGDEDSQVNVAVTANQVFFDLGNTRVIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL++G++P+   ++P     E  +      +A++R ++++  +  AVK+S  +DK+ +T 
Sbjct: 237 RLLEGQYPDVMRLVPQHYPTEAVLPGAEFMEALERATLIT--KDGAVKISFQTDKVTITS 294

Query: 300 DNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + P++G+  E + V      P+DI FN +YLL+ +  +      + +  F+   S +   
Sbjct: 295 NTPEVGQVYEELAVTSMAGDPLDIGFNARYLLDFLKVLE-----EKQFRFQCSGSRNPAR 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   D              YV++P+
Sbjct: 350 LMPADSSQ---------FLYVVLPL 365


>gi|27466920|ref|NP_763557.1| DNA polymerase III subunit beta [Staphylococcus epidermidis ATCC
           12228]
 gi|57865930|ref|YP_190093.1| DNA polymerase III subunit beta [Staphylococcus epidermidis RP62A]
 gi|251811365|ref|ZP_04825838.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|282874722|ref|ZP_06283601.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135]
 gi|293367579|ref|ZP_06614232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|38604836|sp|Q8CQK6|DPO3B_STAES RecName: Full=DNA polymerase III subunit beta
 gi|81672839|sp|Q5HK00|DPO3B_STAEQ RecName: Full=DNA polymerase III subunit beta
 gi|27314462|gb|AAO03599.1|AE016744_2 DNA polymerase III beta subunit [Staphylococcus epidermidis ATCC
           12228]
 gi|57636588|gb|AAW53376.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis RP62A]
 gi|251805114|gb|EES57771.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           BCM-HMP0060]
 gi|281296438|gb|EFA88953.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis SK135]
 gi|291318292|gb|EFE58685.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           epidermidis M23864:W2(grey)]
 gi|329724168|gb|EGG60686.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU144]
 gi|329736046|gb|EGG72319.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU045]
          Length = 377

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 187/394 (47%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEITIPKQ 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEEIVEITETGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  + ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLEDE-SENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNINFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +N        + I FN KY+++ +  I      +DEV    
Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375


>gi|116074276|ref|ZP_01471538.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916]
 gi|116069581|gb|EAU75333.1| DNA polymerase III subunit beta [Synechococcus sp. RS9916]
          Length = 390

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/404 (21%), Positives = 182/404 (45%), Gaps = 35/404 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A+ G   L +      + I  +  
Sbjct: 1   MKLVCSQSELNSALQLVSRAVASRPTHPVLANVLLTADAGTGRLSLTGFDLNLGIQTSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G++T+ A LL +IV +L   + I+   ++    +V ++    ++ +++ P  EF
Sbjct: 61  ASVEASGAVTLPARLLGEIVSRLSADSPITLATDD-ASEQVELTSLSGSYQMRAMPADEF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   +  + ++ L   +  T FA + +E +  L G+       +L+  A +TDG
Sbjct: 120 PDLPLVENGTALRVEAASLVQALRGTLFASSADEAKQLLTGVHLRFQARNLE--AASTDG 177

Query: 179 HRLAVAEVDI-------------VAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSL 223
           HRLAV  V                     + ++ +P +++ E+ R+++    D  V +  
Sbjct: 178 HRLAVLAVKDALQDDPSGAPDADTTTEDGVLAVTLPARSLREVERLIAGWKGDDPVTLFY 237

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
              ++ +      ++ R ++G +PNY+ +IP    + + +       A++RV++++    
Sbjct: 238 DRGQVVVLAADQMVTSRTLEGTYPNYRQLIPDGFTRTIDLERRPFMAALERVAVLADQHN 297

Query: 284 QAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEV 341
             V++S       + ++ D  D+G   ES+        M I FN +Y+L+ +  + +   
Sbjct: 298 NVVRISTEPTAGLVQISADAQDVGSGSESLPATLVGDAMQIAFNVRYVLDGLKAMEA--- 354

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             D +V + ++  +   +   D  S           Y++MP++I
Sbjct: 355 --DRIVLQCNAPTTPAILTPADDTS--------GFTYLVMPVQI 388


>gi|325954048|ref|YP_004237708.1| DNA polymerase III subunit beta [Weeksella virosa DSM 16922]
 gi|323436666|gb|ADX67130.1| DNA polymerase III, beta subunit [Weeksella virosa DSM 16922]
          Length = 372

 Score =  314 bits (804), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 172/386 (44%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ +     +I   NT+P+  + L +     L I  S  E  I+      
Sbjct: 1   MKFIVSSNTLLKNVNTIGGVINNNNTLPILDNFLFELKGNELTITGSDLETTISTTFEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G I V + +L D ++           K+   G  + I     N+ L     SE+P 
Sbjct: 61  SEDEGKIAVPSKILTDTLKTFPAQPLTFIQKD---GNTLEIVSEQGNYQLAYEDASEYPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T + E  +  +L +SV+   + +T FA   +E+R  + G+ F    +      VATD HR
Sbjct: 118 TPDVEEAHLTKLPASVISEAILKTIFATGNDELRPIMTGVLFQAQPD--VFNFVATDAHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         Q  +    I+P+K +  +  IL   +  V +  +++      +++ ++ R
Sbjct: 176 LVKYSRT-GLQSVEAAEYIMPKKPLNLLKNILGGNNDEVTIEYNQTNTRFTFQNIVLTCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY  VIP  N   L +N      ++ RV+I S+     ++L L  + L ++ +
Sbjct: 235 LIDGKYPNYDAVIPKENPNVLTINRNLFLSSLKRVAIFSNKTTNQIRLKLIGNSLTISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   YN   + I FN K+L+E+++N+ S     D++   +   N +  I
Sbjct: 295 DVDFANKAEERLPCEYNGTDLQIGFNSKFLIEMLNNLQS-----DDITLEMSEPNRAGII 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D       +       ++MP+ +
Sbjct: 350 KPVD-----GLEEGEEILMLVMPVML 370


>gi|242372601|ref|ZP_04818175.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           M23864:W1]
 gi|242349656|gb|EES41257.1| DNA polymerase III subunit beta [Staphylococcus epidermidis
           M23864:W1]
          Length = 377

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  IDGEDIVDISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DASENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N  +   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGINNGDFYHAIDRASLLAREGENNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +N        + I FN KY+++ +  I      +DEV    
Sbjct: 296 NELVELSSTSPEIGTVKEEVNANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375


>gi|31791179|ref|NP_853672.1| DNA polymerase III subunit beta [Mycobacterium bovis AF2122/97]
 gi|121635885|ref|YP_976108.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|121635912|ref|YP_976135.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224988385|ref|YP_002643052.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo
           172]
 gi|32700067|sp|O33914|DPO3B_MYCBO RecName: Full=DNA polymerase III subunit beta
 gi|31616764|emb|CAD92864.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)
           [Mycobacterium bovis AF2122/97]
 gi|121491532|emb|CAL69986.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|121491559|emb|CAL70016.1| DNA polymerase III subunit beta dnaN [Mycobacterium bovis BCG str.
           Pasteur 1173P2]
 gi|224771498|dbj|BAH24304.1| DNA polymerase III subunit beta [Mycobacterium bovis BCG str. Tokyo
           172]
          Length = 402

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A + 
Sbjct: 15  FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GS+ VS  LL DI R L +       +    G  V ++ G++ F L + P  ++P+  
Sbjct: 75  SPGSVLVSGRLLSDITRALPNKPVGVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L + +    + +   A   ++    L GI   I  E + L   ATD  RLA
Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187

Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234
           V E+   A    +  +++VP K + E  +      S V++SL        +  + ++   
Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++  +   
Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D+G+A E + V Y   P+ I FN  YL + + ++ S     + V F   ++ 
Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360

Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385
               +R    D +                +  Y+LMP+R+
Sbjct: 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400



 Score = 44.5 bits (104), Expect = 0.029,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 69/182 (37%), Gaps = 16/182 (8%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F L      + V      +        L+G+    ++  L +     D    A A+
Sbjct: 11  TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244
           V   A+I    S++V  + + +I R L +K   V V +  +R+ L   +   S+  +   
Sbjct: 69  V--GAEIVSPGSVLVSGRLLSDITRALPNK--PVGVHVEGNRVALTCGNARFSLPTMPVE 124

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299
           ++P     +P   ++   +      +A+ +V+I +           +++ +  + + +  
Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180

Query: 300 DN 301
            +
Sbjct: 181 TD 182


>gi|315925612|ref|ZP_07921822.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
 gi|315621153|gb|EFV01124.1| DNA-directed DNA polymerase III beta subunit [Pseudoramibacter
           alactolyticus ATCC 23263]
          Length = 369

 Score =  313 bits (803), Expect = 2e-83,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 193/386 (50%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++D++  L    R +  K T+P+   +L +  D  L + ++  EI I  +IPA 
Sbjct: 1   MKFDCSKTDLISALSLVSRGVSNKTTMPILEGILFEVYDHRLFLTSTNLEISIQTSIPAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + ++ ++++VRKL        F E     ++ ++   S F ++     EFP 
Sbjct: 61  VEQDGELILQSNFIFELVRKLSGEDV---FFEQMAQHQLKMTCECSTFTIKGMASDEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    YSF + ++ LK ++  T FA+A +E    L G+   I ++ L +  +A DG+R
Sbjct: 118 FPKVIDDYSFTVDAAALKAMIHGTIFAVAIKENIPVLTGLKLEIEQDQLTM--IALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I +  SIIVP K++ E+ ++LS     V+V+LS+++I   +     + R
Sbjct: 176 LALRRGALSTPINEAVSIIVPGKSMMELDKLLSGVSGDVQVNLSKAQIFFTMGDTQFTSR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF NY+++IP   + E+ ++   L  + +R ++++   +   +K++   D+L ++ 
Sbjct: 236 LLEGEFINYKHIIPKDKNTEVVIDKKLLLDSTERAALLAREGKNNLIKMAFGIDELTLSS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E + +      + I FN K++++ +  I       +++   + +      I
Sbjct: 296 -NAEIGDVHEVIPIQKTGDDLKIAFNSKFIIDALRAID-----QEQITINMTNPVGPAVI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D              Y+++P+R+
Sbjct: 350 LPEDN----------RYVYLILPVRV 365


>gi|163938015|ref|YP_001642899.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4]
 gi|229136316|ref|ZP_04265063.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196]
 gi|163860212|gb|ABY41271.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis
           KBAB4]
 gi|228647188|gb|EEL03276.1| DNA polymerase III subunit beta [Bacillus cereus BDRD-ST196]
          Length = 381

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 92/398 (23%), Positives = 188/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIEQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ + P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|167629173|ref|YP_001679672.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum
           Ice1]
 gi|167591913|gb|ABZ83661.1| DNA polymerase iii, beta subunit [Heliobacterium modesticaldum
           Ice1]
          Length = 371

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 183/387 (47%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +  R ++LE +    R +  K T PV   + L+A D  L + A+  E+ I   IP  
Sbjct: 1   MEFSCSRVELLEAVNAVSRAVSSKATTPVLSGIYLEALDEALRLVATDMELGIEYTIPVR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  V+A +  ++ R+L +G        N     + + +  S   L +    EFP 
Sbjct: 61  TKRTGSTVVNARIFNEMARRLPEGPITFCV--NGDNPALKVRYHGSELTLNTMNPQEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +     K +     FA +++E R +  G+ + I  E+++   VATD HR
Sbjct: 119 LPAILDGDRLIVNQGQFKQMTRLVAFAASSDESRPWFTGVLWDIQPEEIRW--VATDTHR 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA ++   +   + +   +I+  K + ++ R+L  ++  ++++L+ S+  L  + L + +
Sbjct: 177 LALLSGQAVEMHVNQPRQVILHGKTLSDVARLLPDEEGPLQITLTRSQALLETDRLRVIL 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDKLCM 297
           R+I+G++P YQ VIP  +   L +    L +AVDR S+ S        +KLS   + L +
Sbjct: 237 RIIEGQYPKYQQVIPRDHKTRLTIPVRALAEAVDRASLASIGKEGSNIIKLSSEGNLLTI 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             ++P++G   E + V  +  P+ I FN++YL +++  + +     ++V   L  + +  
Sbjct: 297 RSNSPEVGHIYEEVFVDIDGDPIPIAFNFRYLQDVLKVLDT-----EQVRLDLFGTLAPG 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +R   +D         +  Y+++P+R
Sbjct: 352 LLRPVGED---------HYLYLIVPVR 369


>gi|289551835|ref|YP_003472739.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis
           HKU09-01]
 gi|289181366|gb|ADC88611.1| DNA polymerase III beta subunit [Staphylococcus lugdunensis
           HKU09-01]
          Length = 377

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLPGNEVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  +  + +  +++++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DNSENKNVIIPGKALAELNKIMSDSEEDIDIFFAQNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
             ++ + RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +D + ++  +P++G   E +N        + I FN KY+++ +  I      +DEV    
Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAID-----NDEVEIEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKADDSVTQ---------LILPIR 375


>gi|260184855|ref|ZP_05762329.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis CPHL_A]
 gi|289445527|ref|ZP_06435271.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           CPHL_A]
 gi|289418485|gb|EFD15686.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           CPHL_A]
          Length = 402

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A + 
Sbjct: 15  FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GS+ VS  LL DI R L +       +    G  V ++ G++ F L + P  ++P+  
Sbjct: 75  SPGSVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L + +    + +   A   ++    L GI   I  E + L   ATD  RLA
Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187

Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234
           V E+   A    +  +++VP K + E  +      S V++SL        +  + ++   
Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++  +   
Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D+G+A E + V Y   P+ I FN  YL + + ++ S     + V F   ++ 
Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360

Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385
               +R    D +                +  Y+LMP+R+
Sbjct: 361 KPALLRPVSGDDRPVAGLNGDGPFPAVSTDYVYLLMPVRL 400



 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F L      + V      +        L+G+    ++  L +     D    A A+
Sbjct: 11  TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244
           V   A+I    S++V  + + +I R L +K   V V    +R+ L   +   S+  +   
Sbjct: 69  V--GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299
           ++P     +P   ++   +      +A+ +V+I +           +++ +  + + +  
Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180

Query: 300 DN 301
            +
Sbjct: 181 TD 182


>gi|15607144|ref|NP_214516.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Rv]
 gi|15839374|ref|NP_334411.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           CDC1551]
 gi|148659759|ref|YP_001281282.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra]
 gi|148821193|ref|YP_001285947.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis F11]
 gi|167969465|ref|ZP_02551742.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis H37Ra]
 gi|215405986|ref|ZP_03418167.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           02_1987]
 gi|215413856|ref|ZP_03422521.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           94_M4241A]
 gi|215425188|ref|ZP_03423107.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T92]
 gi|215432907|ref|ZP_03430826.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054]
 gi|215448275|ref|ZP_03435027.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85]
 gi|218755718|ref|ZP_03534514.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis GM
           1503]
 gi|219555773|ref|ZP_03534849.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T17]
 gi|253796917|ref|YP_003029918.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 1435]
 gi|254233407|ref|ZP_04926733.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis C]
 gi|254366462|ref|ZP_04982506.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|254548930|ref|ZP_05139377.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           '98-R604 INH-RIF-EM']
 gi|260198986|ref|ZP_05766477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T46]
 gi|260203139|ref|ZP_05770630.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis K85]
 gi|289441369|ref|ZP_06431113.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46]
 gi|289552252|ref|ZP_06441462.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 605]
 gi|289567884|ref|ZP_06448111.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T17]
 gi|289572578|ref|ZP_06452805.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           K85]
 gi|289747772|ref|ZP_06507150.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis
           02_1987]
 gi|289748464|ref|ZP_06507842.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T92]
 gi|289756061|ref|ZP_06515439.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054]
 gi|289760099|ref|ZP_06519477.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85]
 gi|289764117|ref|ZP_06523495.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis GM 1503]
 gi|294995610|ref|ZP_06801301.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis 210]
 gi|297632470|ref|ZP_06950250.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN
           4207]
 gi|297729439|ref|ZP_06958557.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN
           R506]
 gi|298527400|ref|ZP_07014809.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           94_M4241A]
 gi|306778290|ref|ZP_07416627.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu001]
 gi|306778820|ref|ZP_07417157.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu002]
 gi|306782608|ref|ZP_07420930.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu003]
 gi|306786976|ref|ZP_07425298.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu004]
 gi|306795596|ref|ZP_07433898.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu006]
 gi|306801571|ref|ZP_07438239.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu008]
 gi|306805780|ref|ZP_07442448.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu007]
 gi|306970177|ref|ZP_07482838.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu009]
 gi|306974409|ref|ZP_07487070.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu010]
 gi|307082117|ref|ZP_07491287.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu011]
 gi|307086728|ref|ZP_07495841.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu012]
 gi|313656768|ref|ZP_07813648.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis KZN
           V2475]
 gi|3913519|sp|Q50790|DPO3B_MYCTU RecName: Full=DNA polymerase III subunit beta
 gi|3261513|emb|CAA16239.1| DNA POLYMERASE III (BETA CHAIN) DNAN (DNA NUCLEOTIDYLTRANSFERASE)
           [Mycobacterium tuberculosis H37Rv]
 gi|13879043|gb|AAK44225.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis
           CDC1551]
 gi|124603200|gb|EAY61475.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis C]
 gi|134151974|gb|EBA44019.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis str. Haarlem]
 gi|148503911|gb|ABQ71720.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis
           H37Ra]
 gi|148719720|gb|ABR04345.1| DNA polymerase III beta subunit dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis F11]
 gi|253318420|gb|ACT23023.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 1435]
 gi|289414288|gb|EFD11528.1| DNA polymerase III, beta subunit [Mycobacterium tuberculosis T46]
 gi|289436884|gb|EFD19377.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 605]
 gi|289537009|gb|EFD41587.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           K85]
 gi|289541637|gb|EFD45286.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T17]
 gi|289688300|gb|EFD55788.1| DNA polymerase III subunit beta DnaN [Mycobacterium tuberculosis
           02_1987]
 gi|289689051|gb|EFD56480.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           T92]
 gi|289696648|gb|EFD64077.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis EAS054]
 gi|289711623|gb|EFD75639.1| DNA polymerase III (beta chain) dnaN (DNA nucleotidyltransferase)
           [Mycobacterium tuberculosis GM 1503]
 gi|289715663|gb|EFD79675.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis T85]
 gi|298497194|gb|EFI32488.1| DNA polymerase III subunit beta [Mycobacterium tuberculosis
           94_M4241A]
 gi|308213440|gb|EFO72839.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu001]
 gi|308328157|gb|EFP17008.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu002]
 gi|308332531|gb|EFP21382.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu003]
 gi|308336274|gb|EFP25125.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu004]
 gi|308343892|gb|EFP32743.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu006]
 gi|308347676|gb|EFP36527.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu007]
 gi|308351594|gb|EFP40445.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu008]
 gi|308352301|gb|EFP41152.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu009]
 gi|308356304|gb|EFP45155.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu010]
 gi|308360191|gb|EFP49042.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu011]
 gi|308363878|gb|EFP52729.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           SUMu012]
 gi|323717341|gb|EGB26546.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           CDC1551A]
 gi|326905761|gb|EGE52694.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           W-148]
 gi|328456708|gb|AEB02131.1| DNA polymerase subunit III beta dnaN [Mycobacterium tuberculosis
           KZN 4207]
          Length = 402

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A + 
Sbjct: 15  FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GS+ VS  LL DI R L +       +    G  V ++ G++ F L + P  ++P+  
Sbjct: 75  SPGSVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L + +    + +   A   ++    L GI   I  E + L   ATD  RLA
Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187

Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234
           V E+   A    +  +++VP K + E  +      S V++SL        +  + ++   
Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++  +   
Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D+G+A E + V Y   P+ I FN  YL + + ++ S     + V F   ++ 
Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360

Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385
               +R    D +                +  Y+LMP+R+
Sbjct: 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400



 Score = 44.1 bits (103), Expect = 0.035,   Method: Composition-based stats.
 Identities = 28/182 (15%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F L      + V      +        L+G+    ++  L +     D    A A+
Sbjct: 11  TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244
           V   A+I    S++V  + + +I R L +K   V V    +R+ L   +   S+  +   
Sbjct: 69  V--GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299
           ++P     +P   ++   +      +A+ +V+I +           +++ +  + + +  
Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180

Query: 300 DN 301
            +
Sbjct: 181 TD 182


>gi|326383910|ref|ZP_08205594.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL
           B-59395]
 gi|326197369|gb|EGD54559.1| DNA polymerase III subunit beta [Gordonia neofelifaecis NRRL
           B-59395]
          Length = 400

 Score =  313 bits (803), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 97/411 (23%), Positives = 170/411 (41%), Gaps = 39/411 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R +  + +    R +  +  +PV   V+L A++  L++     E+  T  I A 
Sbjct: 1   MKFRVVRDEFADAVAWVARSLPSRPPVPVLGCVVLTADEFGLQVAGFDYEVSATQVISAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   VS  LL DI + L +            G+ V IS G + F L + P  ++P 
Sbjct: 61  VSESGKALVSGRLLADITKALPNKPVDVTID----GSRVAISCGSAKFSLPTMPVEDYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  + + +    V +   A   ++    L G+   I  +  K+   ATD  R
Sbjct: 117 LPEVPQ-NTGSVPADLFSEAVSQVAIAAGKDDTLPMLTGVRVEIEGD--KVVLAATDRFR 173

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-------SESRIHLN 231
           LAV E+    A      + +VP K + E  +        +V+++        SE  + + 
Sbjct: 174 LAVRELQWLPADAGASGAALVPAKTLSEAAKSAGADSTGNVELAFGAVHAIGSEGMLGIT 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
             +   + RL+D EFP ++ + P ++     V    L +++ RVS+++  R   V+L  S
Sbjct: 234 NNAKKTTTRLLDAEFPKFRQLFPANHTSIATVESAPLIESIKRVSLVA-ERGAQVRLDFS 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           SD + +T    + GKA E + V +   P+ I FN  YLL+ +  I +     + V F   
Sbjct: 293 SDSVLLTAGGDEAGKAEEELPVQFYGEPIIIAFNPHYLLDGLAAIGT-----ETVEFGFT 347

Query: 352 SSNS-----------SVFIRGKDKDSKNNKDNKV------NAFYVLMPMRI 385
           +                 +R  + D     ++           Y+LMP+R+
Sbjct: 348 NPEPDGSGQRRAAIRPAVLRPSNGDEPAADESGAYTASASEFSYLLMPVRL 398


>gi|315659994|ref|ZP_07912852.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           lugdunensis M23590]
 gi|315494895|gb|EFU83232.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus
           lugdunensis M23590]
          Length = 377

 Score =  313 bits (802), Expect = 3e-83,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 186/394 (47%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLPGNEVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  +  + +  +++++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DNSENKNVIIPGKALSELNKIMSDSEEDIDIFFAQNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
             ++ + RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GHINFTSRLLEGHYPDTTRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +D + ++  +P++G   E +N        + I FN KY+++ +  I      +DEV    
Sbjct: 296 NDVVELSSTSPEIGTVKEEVNATNVEGGNLKISFNSKYMMDALKAID-----NDEVEIEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKADDSVTQ---------LILPIR 375


>gi|28376976|ref|NP_783868.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254555171|ref|YP_003061588.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum JDM1]
 gi|300769107|ref|ZP_07078996.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308179193|ref|YP_003923321.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum subsp. plantarum ST-III]
 gi|28269807|emb|CAD62704.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum WCFS1]
 gi|254044098|gb|ACT60891.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum JDM1]
 gi|300493347|gb|EFK28526.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           plantarum subsp. plantarum ATCC 14917]
 gi|308044684|gb|ADN97227.1| DNA-directed DNA polymerase III, beta chain [Lactobacillus
           plantarum subsp. plantarum ST-III]
          Length = 379

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 181/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  ++ L +  R I  K TIP+   + L  N   + +  S  +I I   IPAS
Sbjct: 1   MKFTINRSAFIKELNNVQRAISSKTTIPILTGLKLDVNTDAITLTGSDADISIETTIPAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  GSI + A    +IV+KL +        +   G +  I+ G ++F +   
Sbjct: 61  DDNNTLVVEDAGSIVLPARFFSEIVKKLPEDTMTVNVVD---GFQTQITSGAASFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E +   +  LA  VLK L+ +T  A++ +E R  L G+ F +   + +  A
Sbjct: 118 DPENYPHLPEIDTTNTITLAGDVLKELIGQTVIAVSNQESRPILTGVHFILA--NGEFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +         +I+P K++ E+ R++   +  V++ LSE+++   + 
Sbjct: 176 VATDSHRLSQRRIKLPEANNANYDVIIPGKSLTELSRMIGDNNPDVQMRLSENQVLFVLG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL-- 290
           + S   RL++G +P+   +IP  ++  + ++   L  A++R S++S   R   V+ S+  
Sbjct: 236 NTSFYSRLLEGNYPDTSRLIPKESNTTVEISAPALSAAIERASLLSHESRNNVVRFSVNP 295

Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   + +  ++PD+G+  E +     +   ++I FN  Y+ E + +          +   
Sbjct: 296 TDKTITIFGNSPDVGEVTEQLQPTDLSGDELEISFNPDYMKEALRSFGQA-----MIKIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +   ++          N   ++ P+R
Sbjct: 351 FTMALRPFTLVPTEE--------GENFIQLITPVR 377


>gi|59800475|ref|YP_207187.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae FA 1090]
 gi|59717370|gb|AAW88775.1| putative DNA polymerase III, beta subunit [Neisseria gonorrhoeae FA
           1090]
          Length = 367

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER +T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAFTGIVERLHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++     + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I A + +   +I+PRK V E+ ++L++ D  +++ L + ++       ++  ++
Sbjct: 179 AYAACAIDADLPR-AEVILPRKTVLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP++  VIP  NDK   ++   L  A++RVSI+++ + +  +L L    L +   N
Sbjct: 238 IDGKFPDFNRVIPLDNDKIFVLSRAELLGALERVSILANEKFRGARLFLQPGLLSVVCSN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL++++ NI S     D++      +N S     
Sbjct: 298 NEQEEAREEIEIAYQGGELEVGFNIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTV 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                     N  N  Y++MPMRI
Sbjct: 353 P---------NNPNFKYIVMPMRI 367


>gi|253681213|ref|ZP_04862011.1| DNA polymerase III, beta subunit [Clostridium botulinum D str.
           1873]
 gi|253562451|gb|EES91902.1| DNA polymerase III, beta subunit [Clostridium botulinum D str.
           1873]
          Length = 367

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 185/386 (47%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++ + E +  A + +  K+ +P+   + + A +  L +  S  ++ I   I A 
Sbjct: 1   MKFTCAKNKLQEAISIAQKAVTGKSPMPILQGIHISAKNNELTLIGSDIDLSIETKIDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI V + +  +I+RKL +        EN     + I    S F L      EFP+
Sbjct: 61  VKEEGSIVVDSRIFGEIIRKLPNSLININTTEN---NSIEIICEKSKFDLIHMDSDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +   VLKN+++ T FA+A +E R  L GI F + ++  K+  VA DG+R
Sbjct: 118 LPSINENIIFSIPEKVLKNMIKGTIFAIAQDETRPILTGILFEVRDK--KVNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    I  +     S ++P K   E+ +ILS  + +V ++ + + I  N+    +  R
Sbjct: 176 LALKSNMIHNE--NTISAVIPGKTFSEVSKILSDDEKNVNITFTPNHILFNLGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP     ++      L   ++R S+M        VK  + +D L +T 
Sbjct: 234 LLEGEFIKYNSIIPEEYKLKVNAKRAELLNCIERASLMGKEGNTNLVKFDIKNDNLIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G+  E +N+      ++I FN KYL++++  +      DDE++   DSS S   I
Sbjct: 294 -NSQLGRVREELNIILQGDELEIAFNSKYLIDVLKILE-----DDEIIMEFDSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K+ ++           Y+++P+R+
Sbjct: 348 KSKENNT---------YTYLVLPVRL 364


>gi|184199648|ref|YP_001853855.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201]
 gi|183579878|dbj|BAG28349.1| DNA polymerase III beta subunit [Kocuria rhizophila DC2201]
          Length = 374

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 171/387 (44%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +VER  + E +    R +  +  +PV   +L++A +G L I +   EI     I A 
Sbjct: 1   MKFSVERDVLAEAVTWTARSLSPRPPVPVLSGLLIKAENGSLSIASFDYEISARLTISAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+  VS  LL DI R L         +    G +V ++   S F L + P  ++P 
Sbjct: 61  VVEEGTTLVSGRLLADICRSLPSAP----VQLEAEGGKVTLTCRSSKFNLAAMPVDDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S  +A     + V + + A + ++    L GI   I  E  K+  +ATD +R
Sbjct: 117 LPGLPE-LSGVVAGDEFAHAVAQVNIAASKDDTLPILTGIRMEIEGE--KMTLLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           LA+ E+        +  + ++  K + +I + L SS D ++ ++ +   +         +
Sbjct: 174 LAMRELTWRPTDPTISTAALIKAKTLNDIAKTLGSSGDVNMALAPNTELVGFESGGRRTT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LIDGE+P  +++ P +      V  + L +AV RVS+++  R   V+L+ S  ++ + 
Sbjct: 234 SLLIDGEYPKIRSLFPENTPITAVVRTSELVEAVRRVSLVA-ERNTPVRLAFSDGQVALD 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               +  +A E ++   N   + + FN  YL E +    S       V F   +      
Sbjct: 293 AGTGEDAQASEVLDAQLNGDEITVAFNPTYLSEGLHAFDS-----PFVRFSFTAPPKPAV 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +++    + ++ V   Y+LMP+R+
Sbjct: 348 LSAQEE---LDGEDTVEYKYLLMPVRL 371


>gi|237793322|ref|YP_002860874.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
 gi|229263029|gb|ACQ54062.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
          Length = 367

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A L  +I+RKL +        E+     + I   +S F L      EFP+
Sbjct: 61  ILQEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  + LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 PPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +        + ++P K + E+ +IL   + +V ++ + + I  +I    +  R
Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF +Y+++IP   + ++      L  +++R S+M+       VK   S+DK+ +T 
Sbjct: 234 LLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E + V      + I FN KYLL+++  +      DDEVV    SS S   I
Sbjct: 294 -NSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +         N  Y+++P+R+
Sbjct: 348 KNTELN---------NCTYLVLPVRL 364


>gi|56417078|ref|YP_154152.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries]
 gi|222475444|ref|YP_002563861.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Florida]
 gi|255003430|ref|ZP_05278394.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Puerto Rico]
 gi|255004549|ref|ZP_05279350.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Virginia]
 gi|56388310|gb|AAV86897.1| DNA polymerase III beta chain [Anaplasma marginale str. St. Maries]
 gi|222419582|gb|ACM49605.1| DNA polymerase III beta chain (dnaN) [Anaplasma marginale str.
           Florida]
          Length = 379

 Score =  313 bits (802), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 214/385 (55%), Gaps = 23/385 (5%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           ++ R D+L+ L +   +IER+N+I V   V ++A DG++E+ ++  +I I   + ASV  
Sbjct: 15  SISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNASVVH 74

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            G +  SA LLYDIVRKL     + F   +     + +  G++ F+L      +FP+ + 
Sbjct: 75  KGVVVASAQLLYDIVRKLSGDCAVGFKMSD---GRLLVECGNAKFFLHVVAPEKFPAIEG 131

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            E    F++  S +  L+ +T F+M+ EE RY L G++ H+ E+   LC VATDGHRL++
Sbjct: 132 GEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGHRLSL 189

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMSVR 240
           A+V+    +     +IVPRK V E+L+I+     +   V VS+S+ +I    +   M  +
Sbjct: 190 AKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSK 249

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG FP+Y ++IP      + ++  +L  AVDRVS++   +++A+KLS +S +L ++  
Sbjct: 250 VVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLTLSSA 309

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + D G A E + V Y    + I  N +YL+E++  +        EVVF+    N++V I+
Sbjct: 310 SSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGAC----EVVFQ--DGNTAVLIQ 363

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            K+            + +++MPMRI
Sbjct: 364 DKEP---------GGSMHIIMPMRI 379


>gi|229176166|ref|ZP_04303658.1| DNA polymerase III subunit beta [Bacillus cereus MM3]
 gi|228607325|gb|EEK64655.1| DNA polymerase III subunit beta [Bacillus cereus MM3]
          Length = 379

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 190/396 (47%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DNGKEIVEVAQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IISGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I     +   S+++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIADEFQASVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L  + L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQEMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|229170194|ref|ZP_04297880.1| DNA polymerase III subunit beta [Bacillus cereus AH621]
 gi|228613295|gb|EEK70434.1| DNA polymerase III subunit beta [Bacillus cereus AH621]
          Length = 381

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 92/398 (23%), Positives = 187/398 (46%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIKQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ + P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + DS            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDDSI---------IQLILPVR 379


>gi|30260197|ref|NP_842574.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames]
 gi|47525256|ref|YP_016605.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49183041|ref|YP_026293.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne]
 gi|65317470|ref|ZP_00390429.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bacillus anthracis str. A2012]
 gi|167635102|ref|ZP_02393419.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|167641746|ref|ZP_02399989.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|170689459|ref|ZP_02880649.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|170707580|ref|ZP_02898033.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|177655289|ref|ZP_02936843.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190569279|ref|ZP_03022173.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227812680|ref|YP_002812689.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229601421|ref|YP_002864659.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
 gi|254687069|ref|ZP_05150927.1| DNA polymerase III subunit beta [Bacillus anthracis str.
           CNEVA-9066]
 gi|254735165|ref|ZP_05192875.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western
           North America USA6153]
 gi|254742126|ref|ZP_05199813.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B]
 gi|254761356|ref|ZP_05213378.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia
           94]
 gi|30253518|gb|AAP24060.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames]
 gi|47500404|gb|AAT29080.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49176968|gb|AAT52344.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne]
 gi|167510300|gb|EDR85703.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|167529576|gb|EDR92326.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|170127576|gb|EDS96450.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|170666561|gb|EDT17334.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|172080216|gb|EDT65308.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190559586|gb|EDV13577.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227005199|gb|ACP14942.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229265829|gb|ACQ47466.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
          Length = 379

 Score =  312 bits (801), Expect = 4e-83,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQDVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I   + +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|229542314|ref|ZP_04431374.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1]
 gi|229326734|gb|EEN92409.1| DNA polymerase III, beta subunit [Bacillus coagulans 36D1]
          Length = 381

 Score =  312 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 92/398 (23%), Positives = 179/398 (44%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK ++ R+ ++E +    + I  + TIP+   + + A++  +    S  +I I   +P  
Sbjct: 1   MKFSILRNRLIESVQDVSKAITSRTTIPILTGIKITASEEGITFTGSDSDISIESFVPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A +   G I + A +  ++V+KL          E     +  I  G SNF L  
Sbjct: 61  EDGDEIAVIQQTGGIVLQAKIFGELVKKLPMDIV---EIEVANQFQTIIRSGKSNFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   +        + + +LKNL+ +T FA++T E R  L G+ + I     +L 
Sbjct: 118 LDAEEYPHLPQITEDKVIRIPADILKNLIRQTVFAVSTAETRPILTGVNWSIKGS--RLN 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            +ATD HRLA    +I        +I++P K++ E+ +IL   +  V + ++++++    
Sbjct: 176 CIATDSHRLAQRTAEIEMAADAEYNIVIPGKSLNELNKILPDSNEPVGIVITDNQVLFKA 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKL-- 288
           + L    RL++G +P+   +IP     E+ VN     QA+DR S+++        VKL  
Sbjct: 236 KHLLFFSRLLEGNYPDTSRLIPTDGKTEIVVNTKEFLQAIDRASLLAKEGQNANVVKLSS 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +     + +T ++P++GK  + +N        + I F+ KY+++ +  +        E+
Sbjct: 296 VTDIPGTIEITSNSPEIGKVTDRVNCKSIEGEELKISFSSKYMMDALRALEGT-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             R   +     IR  + D+            +++P+R
Sbjct: 351 TIRFTGAMRPFIIRPVNDDT---------TLQLILPVR 379


>gi|16802050|ref|NP_463535.1| DNA polymerase III subunit beta [Listeria monocytogenes EGD-e]
 gi|46906226|ref|YP_012615.1| DNA polymerase III subunit beta [Listeria monocytogenes serotype 4b
           str. F2365]
 gi|47093012|ref|ZP_00230791.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|224498305|ref|ZP_03666654.1| DNA polymerase III subunit beta [Listeria monocytogenes Finland
           1988]
 gi|224503075|ref|ZP_03671382.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL R2-561]
 gi|226222641|ref|YP_002756748.1| DNA polymerase III, beta chain [Listeria monocytogenes Clip81459]
 gi|254824778|ref|ZP_05229779.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|254827426|ref|ZP_05232113.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165]
 gi|254830706|ref|ZP_05235361.1| DNA polymerase III subunit beta [Listeria monocytogenes 10403S]
 gi|254899684|ref|ZP_05259608.1| DNA polymerase III subunit beta [Listeria monocytogenes J0161]
 gi|254913113|ref|ZP_05263125.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|254930867|ref|ZP_05264226.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|254937494|ref|ZP_05269191.1| DNA polymerase subunit III [Listeria monocytogenes F6900]
 gi|254991924|ref|ZP_05274114.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-064]
 gi|255026749|ref|ZP_05298735.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J2-003]
 gi|284803264|ref|YP_003415129.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578]
 gi|284996405|ref|YP_003418173.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923]
 gi|300763384|ref|ZP_07073382.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
           N1-017]
 gi|16409361|emb|CAC98217.1| DNA polymerase III, beta chain [Listeria monocytogenes EGD-e]
 gi|46879490|gb|AAT02792.1| DNA polymerase III, beta subunit [Listeria monocytogenes serotype
           4b str. F2365]
 gi|47018580|gb|EAL09334.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 4b
           H7858]
 gi|225875103|emb|CAS03791.1| DNA polymerase III, beta chain [Listeria monocytogenes serotype 4b
           str. CLIP 80459]
 gi|258599804|gb|EEW13129.1| DNA polymerase subunit III [Listeria monocytogenes FSL N3-165]
 gi|258610096|gb|EEW22704.1| DNA polymerase subunit III [Listeria monocytogenes F6900]
 gi|284058826|gb|ADB69767.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5578]
 gi|284061872|gb|ADB72811.1| DNA polymerase III subunit beta [Listeria monocytogenes 08-5923]
 gi|293582412|gb|EFF94444.1| DNA polymerase subunit III [Listeria monocytogenes HPB2262]
 gi|293591115|gb|EFF99449.1| DNA polymerase III [Listeria monocytogenes J2818]
 gi|293594017|gb|EFG01778.1| DNA polymerase subunit III [Listeria monocytogenes FSL J1-194]
 gi|300515661|gb|EFK42710.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
           N1-017]
 gi|328468323|gb|EGF39329.1| DNA polymerase III subunit beta [Listeria monocytogenes 1816]
 gi|328476146|gb|EGF46852.1| DNA polymerase III subunit beta [Listeria monocytogenes 220]
 gi|332310335|gb|EGJ23430.1| DNA polymerase III subunit beta [Listeria monocytogenes str. Scott
           A]
          Length = 381

 Score =  312 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379


>gi|255520068|ref|ZP_05387305.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-175]
          Length = 381

 Score =  312 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTXFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379


>gi|269958514|ref|YP_003328301.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel]
 gi|269848343|gb|ACZ48987.1| DNA polymerase III, beta subunit [Anaplasma centrale str. Israel]
          Length = 379

 Score =  312 bits (801), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 124/385 (32%), Positives = 214/385 (55%), Gaps = 23/385 (5%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           ++ R D+L+ L +   +IER+N+I V   V ++A DG++E+ ++  +I I   + ASV  
Sbjct: 15  SISREDLLQSLAYVSSVIERRNSIAVLSCVRVEAKDGVVELSSTDLDISIEACVNASVVH 74

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            G +  SA LLYDIVRKL     + F   +     + +  G++ F+L      +FP+ + 
Sbjct: 75  KGVVVASAQLLYDIVRKLSGDCAVGFKMSD---GRLLVECGNAKFFLHVVAPEKFPAIEG 131

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            E    F++  S +  L+ +T F+M+ EE RY L G++ H+ E+   LC VATDGHRL++
Sbjct: 132 GEVDCGFDMQVSHIAELLNKTKFSMSVEESRYNLRGVYMHVAED--MLCCVATDGHRLSL 189

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMSVR 240
           A+V+    +     +IVPRK V E+L+I+     +   V VS+S+ +I    +   M  +
Sbjct: 190 AKVNRPEGLQPDIGVIVPRKTVNELLKIIGGGGDASQVVSVSISQRKICFRYKGYFMVSK 249

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG FP+Y ++IP      + ++  +L  AVDRVS++   +++A+KLS +S +L ++  
Sbjct: 250 VVDGVFPDYLSIIPQERGASVSMDACSLLSAVDRVSVVVFDKVKAIKLSFASGRLTLSSA 309

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + D G A E + V Y    + I  N +YL+E++  +        EVVF+    N++V I+
Sbjct: 310 SSDQGDAREELEVDYKGDEVTIGLNARYLIEVLGCMKGAC----EVVFQ--DGNTAVLIQ 363

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            K+            + +++MPMRI
Sbjct: 364 DKEP---------GGSMHIIMPMRI 379


>gi|9845532|gb|AAG00841.1| DnaN [Mycobacterium tuberculosis]
          Length = 402

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 167/400 (41%), Gaps = 31/400 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A + 
Sbjct: 15  FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G++ VS  LL DI R L +       +    G  V ++ G++ F L + P  ++P+  
Sbjct: 75  SPGTVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L + +    + +   A   ++    L GI   I  E + L   ATD  RLA
Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVL--AATDRFRLA 187

Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234
           V E+   A    +  +++VP K + E  +      S V++SL        +  + ++   
Sbjct: 188 VRELKWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 246

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++  +   
Sbjct: 247 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 305

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D+G+A E + V Y   P+ I FN  YL + + ++ S     + V F   ++ 
Sbjct: 306 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 360

Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385
               +R    D +                +  Y+LMP+R+
Sbjct: 361 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 400



 Score = 43.7 bits (102), Expect = 0.053,   Method: Composition-based stats.
 Identities = 27/182 (14%), Positives = 68/182 (37%), Gaps = 16/182 (8%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F L      + V      +        L+G+    ++  L +     D    A A+
Sbjct: 11  TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244
           V   A+I    +++V  + + +I R L +K   V V    +R+ L   +   S+  +   
Sbjct: 69  V--GAEIVSPGTVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299
           ++P     +P   ++   +      +A+ +V+I +           +++ +  + + +  
Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAAGRDDTLPMLTGIRVEILGETVVLAA 180

Query: 300 DN 301
            +
Sbjct: 181 TD 182


>gi|70725003|ref|YP_251917.1| DNA polymerase III subunit beta [Staphylococcus haemolyticus
           JCSC1435]
 gi|68445727|dbj|BAE03311.1| DNA polymerase III beta chain, sliding clamp subunit
           [Staphylococcus haemolyticus JCSC1435]
          Length = 377

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKLE-DDSENKNVIIPGKALSELNKIMSDSDEEIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +D + ++  +P++G   E +         + I FN +Y+++ +  I      +DEV    
Sbjct: 296 NDVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSRYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K+ DS            +++P+R
Sbjct: 351 FGTMKPFILKPKEDDSVTQ---------LILPIR 375


>gi|327475229|gb|AEA77209.1| DNA polymerase III beta subunit [Exiguobacterium sp. EPVM]
          Length = 379

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 186/396 (46%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T++R   ++ +    + +  + TIP+   + L+A+   L +  S  EI I   IP  
Sbjct: 1   MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ ++A  L +IV+KL           N +     I  G + F+L  
Sbjct: 61  EGGIELIQIQRAGSVVLNARFLGEIVKKLPTNEVTLEVSPNFM---TRIESGQAEFHLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E      F L + +LK ++ +T FA++ +E R  L G+ F  + E   L 
Sbjct: 118 LDPDEYPRLPELSSERRFYLPADLLKTIIRQTSFAVSAQETRPVLTGVNF--SAEKGFLT 175

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA+              +++VP +++ E+ ++L  ++  V++ L++ +I   
Sbjct: 176 CVATDSHRLALRRARFETDNDLTFQNVVVPGRSLNELAKLLDREELPVEIVLTDQQILFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           ++++S   RL+DG +P+   +IP      +R+N  +  QA+DR S+++ + R   +K   
Sbjct: 236 MKNISFFSRLLDGAYPDTSRLIPEEYRTAVRLNAKDFLQAIDRASLLARADRNNVIKFVA 295

Query: 291 SS-DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
                + ++  +P++GK  E +++       + I FN K++++ +  + +      E+  
Sbjct: 296 EEATTVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALDAS-----EIEI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   S     +R  ++DS            +++P+R
Sbjct: 351 QFTGSMRPFILRPVEQDSV---------LQLILPVR 377


>gi|303256369|ref|ZP_07342383.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47]
 gi|331001505|ref|ZP_08325123.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis
           YIT 11859]
 gi|302859860|gb|EFL82937.1| DNA polymerase III, beta subunit [Burkholderiales bacterium 1_1_47]
 gi|329568234|gb|EGG50051.1| DNA polymerase III, beta subunit [Parasutterella excrementihominis
           YIT 11859]
          Length = 391

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 114/384 (29%), Positives = 199/384 (51%), Gaps = 20/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASV 61
           I  ++ +I + +     +++RK  +PV  ++L       + + A+  +++I         
Sbjct: 27  INSKKENIFKPIQAVSGVVQRKQPLPVLSNILFVQKGKQVTLVANDLDLQILTVAEIGEE 86

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +   S T+SA  L DI+  L D   +SF K    G  V +S G S F LQ+    EFP  
Sbjct: 87  NSEMSTTISARKLTDILATLPDTNPLSFSK---KGDHVVLSSGKSKFELQTISAEEFPVI 143

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E +  ++F ++    K L+    FA A   +RY+LNG++  I  E+ K+  VATDGHRL
Sbjct: 144 TEVDLEHAFTMSCLRFKYLLNMVSFACAVNNVRYFLNGVY--ICAENNKVRGVATDGHRL 201

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A+ +V+      K    I+PRK V E++R++      ++V +SE +I      + +  +L
Sbjct: 202 ALCDVEAEKTADKKLDAILPRKTVKELVRLIPDSQDPIEVYISERQIKFKFVGIEILSKL 261

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           ++G +P+YQ VIP  N+KE RV    L  ++ RV+ +++ ++  V+ +L+   L +  +N
Sbjct: 262 VEGRYPDYQRVIPEHNEKEFRVGRQELLSSLQRVATLTADKLMGVRWNLTPGHLNVAANN 321

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            DM +A + ++V Y+  P++I FN  YL+E+++ +      +D V   L    +   IR 
Sbjct: 322 ADMEEAEDEISVEYSGSPIEIGFNVAYLIEVLNVLK-----NDSVRISLGEQKNPALIRM 376

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D D         N  +V+MPM+I
Sbjct: 377 PDND---------NFKFVVMPMKI 391


>gi|187777366|ref|ZP_02993839.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC
           15579]
 gi|187774294|gb|EDU38096.1| hypothetical protein CLOSPO_00922 [Clostridium sporogenes ATCC
           15579]
          Length = 367

 Score =  312 bits (800), Expect = 5e-83,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A L  +I+RKL +        E+     + I   +S F L      EFP+
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  S LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 PPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +        + ++P K + E+ +IL   + +V ++ + + I  +I    +  R
Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF +Y+++IP   + ++    + L  +++R S+M+       VK   S DK+ +T 
Sbjct: 234 LLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E + V      + I FN KYLL+++  +      D+EVV    SS S   I
Sbjct: 294 -NSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +         N  Y+++P+R+
Sbjct: 348 KNTEIN---------NCTYLVLPVRL 364


>gi|165873018|ref|ZP_02217639.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
 gi|254755964|ref|ZP_05207996.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum]
 gi|164711230|gb|EDR16786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
          Length = 379

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 192/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFSIQKDYLVRSVQGVMKAVSFRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  EDGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA++T E R  L G+ + +   +L   
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +ATD HRLA+ +  I   + +   ++++P K++ E+ +IL   +  V + ++E ++   
Sbjct: 176 CIATDSHRLALRKAKIEGIVDEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-S 289
            + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL +
Sbjct: 236 TKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKLST 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S      E+  
Sbjct: 296 LEQAMLEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDST-----EIKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +     IR  + +S            +++P+R
Sbjct: 351 SFTGAMRPFLIRTVNDESI---------IQLILPVR 377


>gi|186680583|ref|YP_001863779.1| DNA polymerase III subunit beta [Nostoc punctiforme PCC 73102]
 gi|186463035|gb|ACC78836.1| DNA polymerase III, beta subunit [Nostoc punctiforme PCC 73102]
          Length = 387

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 92/401 (22%), Positives = 182/401 (45%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE-------NELGTEVNISHGDSNFYLQ 111
           A V   G+I + A LL DI  +L +G      +        +  G  V ++    ++ ++
Sbjct: 61  AEVWQGGAIALPAKLLVDITSRLPEGEITLDDESALTGATSSGEGLIVTLTPKSGHYQVR 120

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
           +    EFP     E      L ++ L   +  + FA + +E +  L G+   + ++   L
Sbjct: 121 AMGPEEFPELPVIENTEVIYLTTAALVEGLRGSLFATSGDETKQVLTGVHLTVKQD--TL 178

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILS---SKDSSVKVSLSES 226
              ATDGHRLAV E      +       + VP +A+ E+ R+L+   S D  V +   + 
Sbjct: 179 EFAATDGHRLAVVETSNERPLGGTSQLEVTVPARALRELQRMLAHSASSDEPVALYFDQG 238

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           ++    ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   V
Sbjct: 239 QVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFVSTLERIAVLADQKNNIV 298

Query: 287 KLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           KLS+ S   ++ ++ +  D+G   ESM    +   ++I FN KYL+E +  + S      
Sbjct: 299 KLSIDSKAQEITLSCEAQDVGSGRESMPAQISGENIEIAFNIKYLMEGLKELPSS----- 353

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           E+   L+ S + V                +   Y+ MP+++
Sbjct: 354 EIQMHLNQSLTPVIFTP---------LGGLKMTYLAMPVQL 385


>gi|153939951|ref|YP_001389371.1| DNA polymerase III subunit beta [Clostridium botulinum F str.
           Langeland]
 gi|168181117|ref|ZP_02615781.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916]
 gi|170757193|ref|YP_001779628.1| DNA polymerase III subunit beta [Clostridium botulinum B1 str.
           Okra]
 gi|226947224|ref|YP_002802315.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str.
           Kyoto]
 gi|152935847|gb|ABS41345.1| DNA polymerase III, beta subunit [Clostridium botulinum F str.
           Langeland]
 gi|169122405|gb|ACA46241.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str.
           Okra]
 gi|182668123|gb|EDT80102.1| DNA polymerase III, beta chain [Clostridium botulinum NCTC 2916]
 gi|226843050|gb|ACO85716.1| DNA polymerase III, beta chain [Clostridium botulinum A2 str.
           Kyoto]
 gi|295317478|gb|ADF97855.1| DNA polymerase III, beta subunit [Clostridium botulinum F str.
           230613]
 gi|322804280|emb|CBZ01830.1| DNA polymerase III beta subunit [Clostridium botulinum H04402 065]
          Length = 367

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A L  +I+RKL +        E+     + I   +S F L      EFP+
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  S LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 PPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +        + ++P K + E+ +IL   + +V ++ + + I  +I    +  R
Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF +Y+++IP   + ++    + L  +++R S+M+       VK   S DK+ +T 
Sbjct: 234 LLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E + V      + I FN KYLL+++  +      D+EVV    SS S   I
Sbjct: 294 -NSQLGMVREELKVVLQGDDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +         N  Y+++P+R+
Sbjct: 348 KNTEIN---------NCTYLVLPVRL 364


>gi|315273165|ref|ZP_07869212.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120]
 gi|313616216|gb|EFR89294.1| DNA polymerase III, beta subunit [Listeria marthii FSL S4-120]
          Length = 381

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLV 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I +   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKDN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETNIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379


>gi|325288203|ref|YP_004264384.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM
           8271]
 gi|324963604|gb|ADY54383.1| DNA polymerase III, beta subunit [Syntrophobotulus glycolicus DSM
           8271]
          Length = 365

 Score =  312 bits (800), Expect = 6e-83,   Method: Composition-based stats.
 Identities = 109/387 (28%), Positives = 191/387 (49%), Gaps = 26/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V ++D+L  +    R +  KNT+P+   + L+A +  L  +A+  E+ I  +  A 
Sbjct: 1   MKIKVTKTDLLTGVNTVQRAVSAKNTLPILQGIKLRAENNTLCFEATDLELGIRSSFDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + + L  +IVRKL D   +    +       NI++  S+F +  +   EFP 
Sbjct: 61  IIEEGTIVLPSRLFSEIVRKLPDSDVVLESTD----HITNINYSGSSFTINGYDPEEFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +       +L + + KN++ +T FA A EE R    G+  H+ E++L L  V TD HR
Sbjct: 117 IGDVPVEDEIKLPADLFKNMIRQTVFACAAEETRPVFTGLLLHLEEDNLAL--VGTDTHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA     I     K    IVP K++ EI R+L   D  + +  S+SR+  N  S+ +  R
Sbjct: 175 LAYRTAKIPGNKQKFKG-IVPAKSMQEIYRLLQD-DHDLTIYCSKSRVFFNFGSIQLQAR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLCM 297
           LIDG+FPNY+ VIP   + +L +N  N    V+R S++S     +  +V++++ +  L +
Sbjct: 233 LIDGQFPNYKQVIPQKCNTKLLINTKNFTDMVERASLLSKDNLIKTGSVRINVENSVLKI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              + + GK  E M +  +   + I FN KY+L+++  I S     + ++     + +  
Sbjct: 293 NQFS-EAGKINEEMKINQDGEDVSISFNSKYVLDLLKIIDS-----ENILMETSGAVNPC 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             R +         N  +   +++P+R
Sbjct: 347 IFRPE---------NDQDYLCLVLPLR 364


>gi|299820841|ref|ZP_07052730.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM
           20601]
 gi|299817862|gb|EFI85097.1| DNA-directed DNA polymerase III beta subunit [Listeria grayi DSM
           20601]
          Length = 381

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 103/395 (26%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFIIKRDRLVQAVNEVSRAISSRTTIPILTGIKITVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + A    DIVR+L D        E     + NI  G ++F L  
Sbjct: 61  DNDEVIVEVESFGGIVLQARYFGDIVRRLPDENV---ELEVVSSYQTNIRSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E        L  +VLKN++ +T FA++  E+R  L G+ + I E  L   
Sbjct: 118 LDPLEYPKLPEVTDGKKIILPINVLKNIIRQTVFAVSAIEVRPVLTGVNWLIKENLLT-- 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   + +  ++++P K++ E+ +IL     S+++ ++ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETSLEEDYNVVIPGKSLSELNKILDDASESIEMVIANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SL 290
           + L    RL++G +P+   +IP     EL +N  +  QA+DR S+++   R   +KL +L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDIKSELVINSKSFLQAIDRASLLARENRNNVIKLSTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S ++ ++ ++P++G   E + +  ++   + I FN KY+++ +          D++V  
Sbjct: 296 ESGQVEVSSNSPEIGNVSERVFSQQFSGEELKISFNGKYMMDALRAFEG-----DDIVIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR KD  + N          ++ P+R
Sbjct: 351 FAGTMRPFVIRPKDATNPNEI------LQLITPVR 379


>gi|168183728|ref|ZP_02618392.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
 gi|182673196|gb|EDT85157.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
          Length = 367

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 190/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I     A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKDELILTGSDMDLSIETKAKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A L  +I+RKL +        E+     + I   +S F L      EFP+
Sbjct: 61  ILQEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPDEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  + LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 PPIINENMIFSIDENKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +        + ++P K + E+ +IL   + +V ++ + + I  +I    +  R
Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF +Y+++IP   + ++      L  +++R S+M+       VK   S+DK+ +T 
Sbjct: 234 LLEGEFISYKSIIPEEYNLKIIAKRLELLNSIERASLMAKEGNTNLVKFDFSNDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E + V      + I FN KYLL+++  +      DDEVV    SS S   I
Sbjct: 294 -NSQLGMVREELRVVLQGEDLQIAFNSKYLLDVLKTME-----DDEVVLEFSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +         N  Y+++P+R+
Sbjct: 348 KNTELN---------NCTYLVLPVRL 364


>gi|229065150|ref|ZP_04200443.1| DNA polymerase III subunit beta [Bacillus cereus AH603]
 gi|228716179|gb|EEL67898.1| DNA polymerase III subunit beta [Bacillus cereus AH603]
          Length = 381

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 188/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIEQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ + P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + +S            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDNSI---------IQLILPVR 379


>gi|229917454|ref|YP_002886100.1| DNA polymerase III subunit beta [Exiguobacterium sp. AT1b]
 gi|229468883|gb|ACQ70655.1| DNA polymerase III, beta subunit [Exiguobacterium sp. AT1b]
          Length = 379

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 186/396 (46%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T++R   ++ +    + +  + TIP+   + L+A+   L +  S  EI I   IP  
Sbjct: 1   MHLTIQRDVFMQAVQDVSKAVASRTTIPILTGLKLEAHADGLTLTGSDTEISIERLIPIE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ ++A  L +IV+KL           N +     I  G + F+L  
Sbjct: 61  EGGMELIQIQRAGSVVLNARFLGEIVKKLPTNEVTLEVSPNFM---TRIESGQAEFHLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E      F L + +LK ++ +T FA++++E R  L G+ F  + E   L 
Sbjct: 118 LDPDEYPRLPELASDRRFYLPADLLKTIIRQTSFAVSSQETRPVLTGVNF--SAEKGFLT 175

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA+              +++VP +++ E+ ++L  ++  +++ L++ +I   
Sbjct: 176 CVATDSHRLALRRARFETDNDLTFQNVVVPGRSLNELAKLLDREELPIEIVLTDQQILFR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
           ++++S   RL+DG +P+   +IP      +R+N     QA+DR S+++ + R   +K   
Sbjct: 236 MKNISFFSRLLDGAYPDTSRLIPEEYRTAVRMNAKEFLQAIDRASLLARADRNNVIKFVA 295

Query: 291 SSDK-LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
                + ++  +P++GK  E +++       + I FN K++++ +  + +      E+  
Sbjct: 296 EDKTAVEVSSHSPEVGKVSERVSILSLEGEELKISFNSKFVMDALRALDAS-----EIEI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   S     +R  ++DS            +++P+R
Sbjct: 351 QFTGSMRPFILRPVEQDSV---------LQLILPVR 377


>gi|294055612|ref|YP_003549270.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM
           45221]
 gi|293614945|gb|ADE55100.1| DNA polymerase III, beta subunit [Coraliomargarita akajimensis DSM
           45221]
          Length = 375

 Score =  312 bits (799), Expect = 7e-83,   Method: Composition-based stats.
 Identities = 101/396 (25%), Positives = 192/396 (48%), Gaps = 33/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + +      L     ++  ++T+P+  +VL++A DG + +  +  ++ I   I A 
Sbjct: 1   MKFKINQDHFSNGLQQVLNVVATRSTMPILSNVLIEAADGHISLTTTNLDLGIRCRIKAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G IT+    L  IVR+L        F E     +  I+ G S F +      EFP 
Sbjct: 61  IETPGGITLPVRKLATIVRELPQSEV---FVEAGDNNQAKITSGGSLFKIMGISTEEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E  + FEL  S + N+++   +  +T+E RY LNG++F+  ++  KL  VATDG R
Sbjct: 118 LPTFENRHVFELGQSEVVNMLKSVSYGQSTDENRYILNGVYFNFADD--KLTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-------- 232
           LA+  ++         S+I+P K V E+ R+L   D  +K++ ++ ++   I        
Sbjct: 176 LALTALETEITEDNAGSLILPAKTVAELERLLGKGDK-LKIAFNDRQVAFEISIGEDSDS 234

Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
              + L +  ++++G +PNY+ VIP   +  +++    + + V R ++++S +  +VKL 
Sbjct: 235 GLADQLYLVSKIVEGNYPNYRQVIPKETEHRVKIERELMLECVHRAALVTSDKSNSVKLK 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +S + L ++  + + G++ ESM + Y+   + + FN ++L+E +  +       DEV F 
Sbjct: 295 VSKNLLEISGSSSEYGESHESMAIAYDGPEVQVAFNPQFLMEPLKAL-----TKDEVFFE 349

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                S    +  D           N   V+MP+R+
Sbjct: 350 FKDELSPGLFKTLD-----------NFICVIMPLRL 374


>gi|239637287|ref|ZP_04678274.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603]
 gi|239597124|gb|EEQ79634.1| DNA polymerase III, beta subunit [Staphylococcus warneri L37603]
 gi|330685256|gb|EGG96917.1| DNA polymerase III, beta subunit [Staphylococcus epidermidis
           VCU121]
          Length = 377

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I  +IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKENEVILTGSDSEISIEISIPKQ 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  IDGEDIVDISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKLE-DTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
             ++   RL++G +P+   + P + + +L +N      A+DR S+++       +KLS  
Sbjct: 236 GHVNFISRLLEGHYPDTTRLFPENYEIKLGINNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +         + I FN KY+++ +  I      +DEV    
Sbjct: 296 NEVVELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375


>gi|148378013|ref|YP_001252554.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC
           3502]
 gi|153931816|ref|YP_001382412.1| DNA polymerase III subunit beta [Clostridium botulinum A str. ATCC
           19397]
 gi|153937046|ref|YP_001385964.1| DNA polymerase III subunit beta [Clostridium botulinum A str. Hall]
 gi|148287497|emb|CAL81556.1| DNA polymerase III, beta chain [Clostridium botulinum A str. ATCC
           3502]
 gi|152927860|gb|ABS33360.1| DNA polymerase III, beta subunit [Clostridium botulinum A str. ATCC
           19397]
 gi|152932960|gb|ABS38459.1| DNA polymerase III, beta subunit [Clostridium botulinum A str.
           Hall]
          Length = 367

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++ +LE +    + +  K+T+P+   +L++AN   L +  S  ++ I   + A+
Sbjct: 1   MKITCQKNILLEGISIVQKAVTGKSTLPILSGILIRANKNELVLTGSDMDLSIETKVKAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+I + A L  +I+RKL +        E+     + I   +S F L      EFP+
Sbjct: 61  ILEEGTIVLDARLFGEIIRKLPNDLIEINTLED---NSIEIICQNSRFNLIYMNPGEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  S LKN+++ T FA A +E R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 PPIINENMIFSIGESKLKNMIKGTIFATAQDETRPILTGVLFQIKDKMLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +        + ++P K + E+ +IL   + +V ++ + + I  +I    +  R
Sbjct: 176 LALRSEVVDND--NTINAVIPGKTLNEVSKILEEDNENVNITFTPNHILFSIGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF +Y+++IP   + ++    + L  +++R S+M+       VK   S DK+ +T 
Sbjct: 234 LLEGEFISYKSIIPEEFNLKIIAKRSELLNSIERASLMAKEGNTNLVKFDFSDDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E + V      + I FN KYLL+++  +      D+EVV    SS S   I
Sbjct: 294 -NSQLGMVREELKVVLQGEDLQIAFNSKYLLDVLKTME-----DNEVVLEFSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +         N  Y+++P+R+
Sbjct: 348 KNTEIN---------NCTYLVLPVRL 364


>gi|84497193|ref|ZP_00996015.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649]
 gi|84382081|gb|EAP97963.1| DNA polymerase III subunit beta [Janibacter sp. HTCC2649]
          Length = 377

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 171/391 (43%), Gaps = 24/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +  +PV   +L++AND G + + A   E+     +PA
Sbjct: 1   MKFRVEREVLAEAVTWVARGLPARPPVPVLAGILIEANDEGTVTLSAFDYEVSARLTVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ V   LL DI R L +            G++V +  G S F L   P  ++P
Sbjct: 61  EVSESGTVLVLGRLLADISRNLPNKP----VDVEVQGSKVQVVCGSSRFSLLQMPSDDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        S  +   +    V +   A    +    L G+   I  +  K+  +ATD +
Sbjct: 117 TLPSSPEP-SGSIDGQLFTQAVNQVSIAADRGDTLPILTGVRVEIEGD--KMTLLATDRY 173

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           RLA+ E+       A    ++VP + + +  R L +   S+ V+L      +  +     
Sbjct: 174 RLAMRELTWNPTDSAASHIVLVPARTLADTARSLGAS-GSIDVALGSAAGGDGLVGFEAG 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S   + RL+DGE+P   ++ P +++ E  VN   L +AV RV++++  R   V+L  +  
Sbjct: 233 SRRTTTRLLDGEYPKVSSIFPTTSETESVVNTAELVEAVKRVALVA-ERNTPVRLRFTEG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +     +  +A E++        +++ FN  +LL+ +  + ++              
Sbjct: 292 QVAIEAGTGEDAQASEAVEATLTGPDVEVAFNPGFLLDGLGAVGTEFS-----RLSFTQP 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +    + G+   ++ + +   +  YV+MP+R
Sbjct: 347 SRPAVLSGQ---AEADGEADTSYRYVIMPVR 374


>gi|23193192|gb|AAN14421.1|AF319579_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 381

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 188/398 (47%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIEQTGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ + P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + +S            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDNSI---------IQLILPVR 379


>gi|325106471|ref|YP_004276125.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145]
 gi|324975319|gb|ADY54303.1| DNA polymerase III, beta subunit [Pedobacter saltans DSM 12145]
          Length = 374

 Score =  312 bits (799), Expect = 8e-83,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 179/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  + +L+ L      +     +P+  + L +  +G L I A+  +  +  ++   
Sbjct: 1   MRFIVSTTTLLKHLQSVSGALSSSAVLPILENFLFEIKEGNLIISATDLQTSMITSLAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G I V + +L D ++ L +        E     E  IS GD  + L      +FP 
Sbjct: 61  AKEGGKIAVPSKILLDTLKTLPEQPIAFSVDEQTYAIE--ISAGDGKYKLSGENGEDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +  L +S L   + +T FA++ +E+R  + G+F  ++ +D+    VATD H+
Sbjct: 119 IPTVDEASTVNLPASALSEAINKTIFAVSNDELRPAMTGVFCQLSPQDITF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         +     S I+P+KA+  +   L S+D +V V  + +       ++S+  R
Sbjct: 177 LVRYRRK-DTKSESSTSFILPKKALNLLKSALPSEDVNVAVEYNSTSAFFKFANISLICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP +N  +L ++ +     + RV I ++     V+L +S  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPQNNPNKLILDKSLFLNCLKRVVIFANKTTHQVRLKISGSELHISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E +   YN   M+I FN K+L+E+++NIS      DEV   + + N +  +
Sbjct: 296 DLDFANEAHERIGCQYNGEDMEIGFNAKFLIEMLNNISG-----DEVTLEMSTPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   +  D   +   ++MP+ +
Sbjct: 351 ------FPSVTDENEDVLMLVMPVML 370


>gi|217965933|ref|YP_002351611.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23]
 gi|255022506|ref|ZP_05294492.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL J1-208]
 gi|290892038|ref|ZP_06555035.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071]
 gi|217335203|gb|ACK40997.1| DNA polymerase III, beta subunit [Listeria monocytogenes HCC23]
 gi|290558632|gb|EFD92149.1| DNA polymerase subunit III [Listeria monocytogenes FSL J2-071]
 gi|307569525|emb|CAR82704.1| DNA polymerase III, beta subunit [Listeria monocytogenes L99]
          Length = 381

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 102/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379


>gi|75906227|ref|YP_320523.1| DNA polymerase III subunit beta [Anabaena variabilis ATCC 29413]
 gi|75699952|gb|ABA19628.1| DNA polymerase III, beta subunit [Anabaena variabilis ATCC 29413]
          Length = 387

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 184/401 (45%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT------EVNISHGDSNFYLQS 112
           A V   G+I + A LL DI  +L +G      +    GT       V+++     + L++
Sbjct: 61  ADVWQSGAIALPAKLLVDITSRLPEGEITLDDESATDGTATGEGLIVSLTPKTGKYQLRA 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  L ++ L   +  + FA + +E +  L G+   + ++   L 
Sbjct: 121 MGAEEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQD--TLE 178

Query: 173 AVATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
             ATDGHRLAV E           +   + VP +A+ E+ R+L+     +  + + L + 
Sbjct: 179 FAATDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQG 238

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           ++    ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   V
Sbjct: 239 QVIFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNIV 298

Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           KL++  ++ +L ++ +  +MG   ESMN       ++I FN KYL+E +  + S      
Sbjct: 299 KLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPS-----P 353

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           E+   ++ + + V                +   Y+ MP+++
Sbjct: 354 EIQMHINQNLTPVIFTP---------LGGLKMTYLAMPVQL 385


>gi|224477955|ref|YP_002635561.1| DNA polymerase III subunit beta [Staphylococcus carnosus subsp.
           carnosus TM300]
 gi|222422562|emb|CAL29376.1| DNA polymerase III beta subunit [Staphylococcus carnosus subsp.
           carnosus TM300]
          Length = 378

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R   +  L    + I  + T+P+   + + A +  + +  S  EI I  +IP  
Sbjct: 2   MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIDAKEDEVILTGSDSEISIEISIPKQ 61

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL                +  I+ G S F L  
Sbjct: 62  VDGEDIVTISETGSVVLPGRFFVDIIKKLPGKDVKLST---NAQFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L   VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPQVSQDDAIQLPIKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +     ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKLEDEDIDNKNVIIPGKALAELNKIVSDSEDDINIFFASNQVLFKV 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
             ++   RL++G +P+   + P + + ++ ++ ++   A+DR S+++       +KLS  
Sbjct: 237 GHINFISRLLEGHYPDTSRLFPENYETKIEMSNSDFYHAIDRASLLAREGGNNVIKLSTG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++++ ++  +P++G   E +N        + I FN KY+++ +  I S     DEV    
Sbjct: 297 NEEVELSSTSPEIGTVKEDVNANDVEGSNLKISFNSKYMMDALKAIDS-----DEVEVEF 351

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K+ DS            +++P+R
Sbjct: 352 FGTMKPFTLKPKEDDSVVQ---------LILPIR 376


>gi|262371172|ref|ZP_06064493.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
 gi|262313902|gb|EEY94948.1| DNA polymerase subunit III [Acinetobacter johnsonii SH046]
          Length = 382

 Score =  311 bits (798), Expect = 9e-83,   Method: Composition-based stats.
 Identities = 118/400 (29%), Positives = 204/400 (51%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  +L +L H    +ER++T+ +  +V +Q     L I  S  E+E+  + P +
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKVQVTQASLTITGSDLEVELVASTPLT 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                  G  TV A  L DI + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACLQAGETTVPARKLMDICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E        +    LK L E+T FAMA +++R+YL G    I+   L+  AV T
Sbjct: 119 YPLLTTENTQGTQVAVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDNNQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIES 234
           DGHRLA+ E    +   ++   IVPRKAVGE+ R+LS +D  + + +      + ++I S
Sbjct: 177 DGHRLALCETVASSNATQLIQAIVPRKAVGELQRLLSIEDEQLALLIGRELLNVTISIAS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RVSI+S+ +++ 
Sbjct: 237 RDKEQGDTMVRFTTKLIDGKFPDYRRVIPRGGDKNVLIAHDVFKQSLQRVSILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ ++D L +  +NP+  +A+E + + YN  PM++ FN +Y+LE++  +       D+
Sbjct: 297 VFLNFAADTLQLRANNPEQDEAVEDLAIQYNNAPMEMSFNAQYILEVLGALDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VSMTMTEANQSVLVQDP---------AHQDQTYVVMPMRV 382


>gi|271961611|ref|YP_003335807.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270504786|gb|ACZ83064.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 379

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 173/393 (44%), Gaps = 24/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M   +ER  + E +    R +  + ++PV   + L+  + G L++     E+     +  
Sbjct: 1   MMFRIERDVLAEAVAWTARSLPARPSVPVLAGMRLEVTEKGQLKLSGFDYEVSAEVTLEP 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G + VS  LL +I R L     + F  E   G +  ++ G + F L + P  ++P
Sbjct: 61  QSGEAGVVLVSGRLLAEITRALP-AQPVDFVVE---GAKAVVTCGSARFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S            +  V  + V +   A   ++    L G+   I  + + L   ATD +
Sbjct: 117 SLPTMPPAAGRVGS-DVFASAVGQVAVAAGKDDTLPMLTGVRMEIEGDTVTL--AATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNI 232
           RLAV E+          +I ++P K + +  + L S  + V+V++S      E  I  + 
Sbjct: 174 RLAVRELKWQPGQPDFSAIAMIPGKTLADAAKALGSTGAEVEVAMSSVGGTGEGMIGFSS 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+D EFP Y++++P        ++ +   +AV RV++++  R   V+L+   
Sbjct: 234 AGRRTTTRLLDPEFPKYRSLLPTEFSARADLSTSAFVEAVKRVALVA-ERNTPVRLAFRG 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D++ +   + D  +A+E + V +    ++I FN+++LLE +  I SD         ++ +
Sbjct: 293 DEVVLEAGSGDEAQAVEVLPVDFEGDDINIAFNHQFLLEGLGAIDSDV-----ARLQMTT 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S     + G       +     +  Y++MP+R+
Sbjct: 348 STKPAILTG---GKHVDDGGVPDYRYLIMPIRL 377


>gi|16329463|ref|NP_440191.1| DNA polymerase III subunit beta [Synechocystis sp. PCC 6803]
 gi|2494196|sp|P72856|DPO3B_SYNY3 RecName: Full=DNA polymerase III subunit beta
 gi|1651945|dbj|BAA16871.1| DNA polymerase III beta subunit [Synechocystis sp. PCC 6803]
          Length = 391

 Score =  311 bits (798), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 99/405 (24%), Positives = 181/405 (44%), Gaps = 36/405 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLL+A+     L + A    + I  +  
Sbjct: 1   MKLICRQSDLSSGLSLVSRAVSSRPTHPVLGNVLLEADADKNYLRLTAFDLSLGIQSSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQ---ISFFKENELGTEVNISHGDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L DG     I    +        I+     F ++    
Sbjct: 61  ADVQQSGRITLPAKLLNDIVSRLPDGDITLAIDPDGDAGDSHLTTITSESGRFQIRGLDA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            +FP+    E V    L  + L   +    FA +T+E +  L G+  HI      L   A
Sbjct: 121 DDFPALPTVEGVKPLLLPVATLNEGLRGALFAASTDETKQVLTGV--HIKGSGDSLEFAA 178

Query: 176 TDGHRLAVAEVDIVAQIAKMPSII-----------VPRKAVGEILRILSSKDSS--VKVS 222
           TDGHRLAV E     +  +  ++I           +P +A+ E+ R+++S+ +S  V + 
Sbjct: 179 TDGHRLAVVEAPTQIENDEGEAVITGSDLADFAVTIPARALRELERMVASQGNSDLVSLV 238

Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
           ++++++   +    ++ R ++G +P Y  +IP    + + +    L  +++RVS+++  +
Sbjct: 239 VNDTQVIFELGDQRLTSRKLEGAYPAYDQLIPRQFSRTVTMERKRLITSLERVSVLADQK 298

Query: 283 IQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              V  +L    ++L + V+  D+G   ESM          I FN KYL++ +  + S++
Sbjct: 299 NNLVTFTLQSPGNQLQLAVEAQDLGHGEESMGAEIIGEGGQIAFNIKYLMDGLKALPSND 358

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +  +L+  N  V                +   Y++MP+R+
Sbjct: 359 -----IQMQLNEGNQPVIFTP---------LGGLKMTYLVMPVRL 389


>gi|42520873|ref|NP_966788.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
 gi|42410613|gb|AAS14722.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila melanogaster]
          Length = 365

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 217/384 (56%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 1   MRFSVSRTSLLNTLSRVSGVVERRNAIDVFACINIKAQHGSIKLMATDLDISMFASLAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+
Sbjct: 61  VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 119 LEEDNYKHDFTLLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L+IL   +  +KV LS+ +I        +  +
Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKFTCGEYILISK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FPNY+ VIP S DK + +    L   +DRVS++ S +++++K SL    L +  +
Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A ES+ V YNE P++I FN +YLL+++  I       ++  F L   NS+  I 
Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGNSATIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D  S         A YV+MPMR
Sbjct: 350 DEDDSS---------ALYVVMPMR 364


>gi|297558987|ref|YP_003677961.1| DNA polymerase III subunit beta [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296843435|gb|ADH65455.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 379

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 177/394 (44%), Gaps = 28/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGA 56
           MK  VER  + E +    R +  + ++PV   +LL+A +      L +     E+    A
Sbjct: 1   MKFRVERDVLAEAVAWTARTLPTRPSVPVLVGILLEAGEFDGLQQLRLSGFDYEVSTQAA 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +   V+  G++ V+  LL +I R L         + +  G +V ++ G + F L + P  
Sbjct: 61  VDVEVEEPGTVLVTGKLLAEITRNLPAQP----VEISTDGAKVVVTGGSAKFTLTTMPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+  E   V S  + S      V +   A   ++    L G+   I  E + L   +T
Sbjct: 117 DYPTLPEMPGV-SGTVGSDAFAAAVSQVAVAAGRDDTLPMLTGVRVEIEGETITL--AST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSES-----RIHL 230
           D +RLAV E     +   + ++ +VP K + +  + L+S  + V ++LS+       I  
Sbjct: 174 DRYRLAVREFTWKPENPDLSAVALVPAKTLHDTAKSLTSG-AEVSIALSDGGSGEGMIGF 232

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                  + RL+DGEFP Y+ ++P + +    V+ +   +AV RVS+++  R   ++LS 
Sbjct: 233 EGGGRRTTTRLLDGEFPKYRALLPDTFNSVAEVSRSEFVEAVKRVSLVA-ERNTPLRLSF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S  +L +     +  +A+E +    +   + I FN  +LL+ +  I +D           
Sbjct: 292 SQGQLVLEAGTGEEAQAVEVLEADLDGDDIQIAFNSGFLLDGLGAIGTDV-----ARLHF 346

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +S     + GK  +  ++ +      Y++MP+R
Sbjct: 347 TTSTKPSILTGKPAEEGSSPE----YRYLIMPVR 376


>gi|17229502|ref|NP_486050.1| DNA polymerase III subunit beta [Nostoc sp. PCC 7120]
 gi|17131100|dbj|BAB73709.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120]
          Length = 387

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 184/401 (45%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCAQSDLSTNLSLVNRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT------EVNISHGDSNFYLQS 112
           A V   G+I + A LL DI  +L +G      +    GT       V+++     + L++
Sbjct: 61  ADVWQSGAIALPAKLLVDITSRLPEGEITLDDESATDGTATGEGLIVSLTPKTGKYQLRA 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  L ++ L   +  + FA + +E +  L G+   + ++   L 
Sbjct: 121 MGAGEFPELPLIENTTAIYLTATSLIEGLRGSLFATSGDETKQVLTGVHLTVKQD--TLE 178

Query: 173 AVATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
             ATDGHRLAV E           +   + VP +A+ E+ R+L+     +  + + L + 
Sbjct: 179 FAATDGHRLAVVETTNERPLEDNDQQLEVTVPARALRELERMLAHNAASEEPIALYLDQG 238

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           ++    ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   V
Sbjct: 239 QVVFAWQNQRLTSRTLEGQYPAYRQLIPRQFERQVTIERRQFLSTLERIAVLADQKNNIV 298

Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           KL++  ++ +L ++ +  +MG   ESMN       ++I FN KYL+E +  + S      
Sbjct: 299 KLTIDSTAQELTLSCEAQEMGSGRESMNAEIAGEDIEIAFNVKYLMEGLKALPS-----P 353

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           E+   ++ + + V                +   Y+ MP+++
Sbjct: 354 EIQMHINQNLTPVIFTP---------LGGLKMTYLAMPVQL 385


>gi|254851840|ref|ZP_05241188.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503]
 gi|258605132|gb|EEW17740.1| DNA polymerase subunit III [Listeria monocytogenes FSL R2-503]
          Length = 381

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIIEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDAANPNEI------LQLITPVR 379


>gi|229014657|ref|ZP_04171771.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048]
 gi|228746668|gb|EEL96557.1| DNA polymerase III subunit beta [Bacillus mycoides DSM 2048]
          Length = 381

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 187/398 (46%), Gaps = 33/398 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIKQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R  L G+ + +   +L   
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRPILTGVNWKVYNSELT-- 175

Query: 173 AVATDGHRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
            +ATD HRLA+ +  I           ++++P K++ E+ +IL   +  V + ++E ++ 
Sbjct: 176 CIATDSHRLALRKAKIEGYNIADEFQANVVIPGKSLSELSKILDESEEMVDIVITEYQVL 235

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL 288
              + L    RL++G +P+   +IP  +  ++ VN     QA+DR S+++   R   VKL
Sbjct: 236 FRTKHLLFFSRLLEGNYPDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARDGRNNVVKL 295

Query: 289 -SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            +L    L ++ + P++GK +E +     +   + I F+ KY+++ +  + S      E+
Sbjct: 296 STLEQQMLEISSNAPEIGKVVEEVQCENVDGEELKISFSAKYMMDALKALDST-----EI 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     IR  + +S            +++P+R
Sbjct: 351 KVSFTGAMRPFLIRTVNDNSI---------IQLILPVR 379


>gi|154496127|ref|ZP_02034823.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC
           29799]
 gi|150274682|gb|EDN01746.1| hypothetical protein BACCAP_00411 [Bacteroides capillosus ATCC
           29799]
          Length = 370

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 175/387 (45%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T E++ +   +  + R +  K++IP    +LL+A    L +     E  I   +PA 
Sbjct: 1   MKFTCEKALLQSAISTSSRAVSPKSSIPALEGILLEA-GSELRLTGYNLETGIRTVVPAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ +SA L  +I+RKL D   I   +       VNI  G S F +      EFP 
Sbjct: 60  IQAKGSLVLSARLFGEIIRKLPDDTVIFTAE----NYMVNIKCGMSEFNILGTDPEEFPE 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               EY  SF +    LK ++ +T FA++  E R    G  F ++E  L +  V+ DG+R
Sbjct: 116 LPTVEYQNSFVITQERLKAMIGQTLFAVSDNESRPIHTGSLFEVDENGLTV--VSVDGYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+    I  +  +   S +VP  A+ E+ +I S  D    V+     +   +    +  
Sbjct: 174 LALRHEPIDKKEGEASFSFVVPGAALSEVEKICSQVDEPASVTQGARHVMFKVGDTMLVA 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           R ++GEF  Y+  +P +N   +  +   L  ++DRVS++ S +++  ++     + L ++
Sbjct: 234 RRLEGEFLAYRQAVPRNNPIHIEGDTRALLSSIDRVSLIISDKLKSPLRCIFEENLLKIS 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +G A +   V  +   ++I FN KYL++ +    +     D V   L +  S   
Sbjct: 294 TKTA-IGDARDECPVSGDGKGLEIGFNNKYLMDALKAAPA-----DRVRLELSTGVSPCV 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D           N  Y+++P+R+
Sbjct: 348 ILPDD--------GGDNFLYMVLPVRL 366


>gi|72160490|ref|YP_288147.1| DNA polymerase III subunit beta [Thermobifida fusca YX]
 gi|71914222|gb|AAZ54124.1| DNA polymerase III beta subunit family protein [Thermobifida fusca
           YX]
          Length = 379

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 171/395 (43%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND---GLLEIKASGPEIEITGAI 57
           MK  V+R    + +    R +  +  +PV   + L+  D     L +     E+    ++
Sbjct: 1   MKFRVDRDAFADAVTWTARALPARPAVPVLAGMRLEVADTASDTLRLSGFDYEVSAQASV 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               +  GS+ V   LL +IVR L         +    G+   ++ G++ F L + P  +
Sbjct: 61  DVHAEEAGSVLVPGRLLAEIVRTLPPHPVEFHVE----GSRALLTCGNARFTLLTLPLED 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P+             + V    V +   + + ++    L G+      +   +   ATD
Sbjct: 117 YPTLPAMPRTIG-SAPADVFATAVRQVLPSTSRDDTLPMLTGVHLTFRGD--TILLAATD 173

Query: 178 GHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR------IHL 230
            +R+AV E+    +   +  S +VP + +G+  R L+  +  + +S S+SR      I  
Sbjct: 174 RYRIAVREMWWKPEEVDIDTSALVPARTLGDFSRSLTGGNVDIALSTSDSRGAGEGMIGF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             +    + RLID +F +Y++  P     +  V    L +AV RV++++  R   V+LS 
Sbjct: 234 EHDGKRTTTRLIDSDFVSYESRFPTEFAAQADVPVAPLAEAVKRVALVA-DRSTPVRLSF 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +S ++ +   + D  +A+E++ V +   PM I FN +Y L+ + N+ +     +    R 
Sbjct: 293 TSSEVVLEAGSGDDAQALEALEVNFEGEPMRIAFNPQYFLDGLTNVET-----ERAFLRF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +      I G    +   +  K +  Y++MP+R+
Sbjct: 348 VAPTRPAVITG----TPAKEGGKPDFRYLVMPLRL 378


>gi|254478910|ref|ZP_05092272.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM
           12653]
 gi|214035132|gb|EEB75844.1| DNA polymerase III, beta subunit [Carboxydibrachium pacificum DSM
           12653]
          Length = 385

 Score =  311 bits (797), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 190/389 (48%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ +LE +  A R +  + T+P+   + + A   ++++  +  EI I   IPA 
Sbjct: 16  MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 75

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V A +  D+V+KL +G       +++    VN+  GD NF +      EFP 
Sbjct: 76  IEEEGETVVPARIFSDLVKKLPEGEV---EVKSDSQNTVNVVSGDINFSIAGSNPEEFPE 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF+L  S+LK+L+++T F ++ E+ R  L G+ F +   +LK  AVA DG R
Sbjct: 133 IPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGFR 190

Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           + A+  S+++P   + EI RIL  +++ V +  + +++   I++  
Sbjct: 191 MAIYSYKSEKSFFDEEAEKYSLVIPGDTLDEISRILEDEETEVIIYHTSNQVLFQIDNTK 250

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ +N     ++++R S+++  +   VK  +    + 
Sbjct: 251 VISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEIGDSFIV 310

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  +       E + V      ++I FN +YLL+ +  I      ++EV     +S + 
Sbjct: 311 ISSSSEKG-SMSEKLEVEVKGMLLEIAFNSRYLLDALKAID-----EEEVNLYFINSINP 364

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+            +    Y+++P+++
Sbjct: 365 LIIKPV---------GEKEYLYMILPVKL 384


>gi|302331774|gb|ADL21967.1| DNA-directed DNA polymerase beta subunit, DnaN [Staphylococcus
           aureus subsp. aureus JKD6159]
          Length = 377

 Score =  311 bits (796), Expect = 1e-82,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|15922992|ref|NP_370526.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus Mu50]
 gi|15925707|ref|NP_373240.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus N315]
 gi|21281731|ref|NP_644817.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MW2]
 gi|49482255|ref|YP_039479.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MRSA252]
 gi|49484914|ref|YP_042135.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MSSA476]
 gi|57651110|ref|YP_184913.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus COL]
 gi|87160973|ref|YP_492724.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|88193825|ref|YP_498610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|148266449|ref|YP_001245392.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus JH9]
 gi|150392482|ref|YP_001315157.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus JH1]
 gi|151220214|ref|YP_001331037.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156978333|ref|YP_001440592.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus Mu3]
 gi|161508268|ref|YP_001573927.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_TCH1516]
 gi|221141517|ref|ZP_03566010.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus str. JKD6009]
 gi|253730401|ref|ZP_04864566.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253733837|ref|ZP_04868002.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|254663936|ref|ZP_05143408.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus Mu50-omega]
 gi|257424198|ref|ZP_05600627.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257426875|ref|ZP_05603277.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257429511|ref|ZP_05605898.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257432158|ref|ZP_05608521.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257435119|ref|ZP_05611170.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|257793540|ref|ZP_05642519.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781]
 gi|258411154|ref|ZP_05681433.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763]
 gi|258420942|ref|ZP_05683876.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719]
 gi|258438581|ref|ZP_05689804.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299]
 gi|258443963|ref|ZP_05692301.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115]
 gi|258446221|ref|ZP_05694381.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300]
 gi|258449120|ref|ZP_05697226.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           A6224]
 gi|258451365|ref|ZP_05699396.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948]
 gi|258454402|ref|ZP_05702370.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937]
 gi|262049434|ref|ZP_06022306.1| DNA polymerase III beta chain [Staphylococcus aureus D30]
 gi|262051883|ref|ZP_06024098.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3]
 gi|269201692|ref|YP_003280961.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus ED98]
 gi|282894281|ref|ZP_06302511.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117]
 gi|282902633|ref|ZP_06310526.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282910028|ref|ZP_06317836.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282912276|ref|ZP_06320072.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282912916|ref|ZP_06320708.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282918070|ref|ZP_06325820.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|282920721|ref|ZP_06328440.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765]
 gi|282921292|ref|ZP_06329010.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282922544|ref|ZP_06330234.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282927752|ref|ZP_06335366.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102]
 gi|283959486|ref|ZP_06376927.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|284023039|ref|ZP_06377437.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus 132]
 gi|293497969|ref|ZP_06665823.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|293511559|ref|ZP_06670253.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|294849830|ref|ZP_06790570.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|295406866|ref|ZP_06816670.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|295429299|ref|ZP_06821921.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296275685|ref|ZP_06858192.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus MR1]
 gi|297209450|ref|ZP_06925848.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297245901|ref|ZP_06929763.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|297589199|ref|ZP_06947840.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|300911474|ref|ZP_07128923.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|304379950|ref|ZP_07362679.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|60389826|sp|Q6GD88|DPO3B_STAAS RecName: Full=DNA polymerase III subunit beta
 gi|60389828|sp|Q6GKU3|DPO3B_STAAR RecName: Full=DNA polymerase III subunit beta
 gi|60392198|sp|P0A022|DPO3B_STAAM RecName: Full=DNA polymerase III subunit beta
 gi|60392199|sp|P0A023|DPO3B_STAAW RecName: Full=DNA polymerase III subunit beta
 gi|60392200|sp|P0A024|DPO3B_STAAU RecName: Full=DNA polymerase III subunit beta
 gi|60392205|sp|P99103|DPO3B_STAAN RecName: Full=DNA polymerase III subunit beta
 gi|81695636|sp|Q5HJZ4|DPO3B_STAAC RecName: Full=DNA polymerase III subunit beta
 gi|13699919|dbj|BAB41218.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           N315]
 gi|14245769|dbj|BAB56164.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus
           Mu50]
 gi|21203166|dbj|BAB93867.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus
           MW2]
 gi|49240384|emb|CAG39030.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           MRSA252]
 gi|49243357|emb|CAG41774.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           MSSA476]
 gi|57285296|gb|AAW37390.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus COL]
 gi|87126947|gb|ABD21461.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus USA300_FPR3757]
 gi|87201383|gb|ABD29193.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus NCTC 8325]
 gi|147739518|gb|ABQ47816.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus JH9]
 gi|149944934|gb|ABR50870.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus JH1]
 gi|150373014|dbj|BAF66274.1| DNA polymerase III beta subunit [Staphylococcus aureus subsp.
           aureus str. Newman]
 gi|156720468|dbj|BAF76885.1| DNA polymerase III beta chain [Staphylococcus aureus subsp. aureus
           Mu3]
 gi|160367077|gb|ABX28048.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus
           subsp. aureus USA300_TCH1516]
 gi|253725881|gb|EES94610.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus USA300_TCH959]
 gi|253728140|gb|EES96869.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|257273216|gb|EEV05318.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 55/2053]
 gi|257276506|gb|EEV07957.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 65-1322]
 gi|257279992|gb|EEV10579.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus 68-397]
 gi|257283037|gb|EEV13169.1| DNA polymerase subunit III [Staphylococcus aureus subsp. aureus
           E1410]
 gi|257285715|gb|EEV15831.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M876]
 gi|257787512|gb|EEV25852.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9781]
 gi|257840039|gb|EEV64504.1| DNA polymerase subunit III beta [Staphylococcus aureus A9763]
 gi|257843132|gb|EEV67547.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9719]
 gi|257848140|gb|EEV72132.1| DNA polymerase subunit III beta [Staphylococcus aureus A9299]
 gi|257850847|gb|EEV74791.1| DNA polymerase subunit III beta [Staphylococcus aureus A8115]
 gi|257855047|gb|EEV77990.1| DNA polymerase subunit III beta [Staphylococcus aureus A6300]
 gi|257857553|gb|EEV80448.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           A6224]
 gi|257860895|gb|EEV83712.1| DNA polymerase subunit III beta [Staphylococcus aureus A5948]
 gi|257863496|gb|EEV86256.1| DNA polymerase subunit III beta [Staphylococcus aureus A5937]
 gi|259160210|gb|EEW45239.1| DNA polymerase III beta chain [Staphylococcus aureus 930918-3]
 gi|259162431|gb|EEW47001.1| DNA polymerase III beta chain [Staphylococcus aureus D30]
 gi|262073982|gb|ACY09955.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus ED98]
 gi|269939528|emb|CBI47886.1| DNA polymerase III, beta chain [Staphylococcus aureus subsp. aureus
           TW20]
 gi|282314765|gb|EFB45151.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C101]
 gi|282315707|gb|EFB46091.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C427]
 gi|282318355|gb|EFB48715.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus D139]
 gi|282323016|gb|EFB53335.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M899]
 gi|282323972|gb|EFB54288.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WBG10049]
 gi|282326094|gb|EFB56399.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus WW2703/97]
 gi|282590512|gb|EFB95590.1| DNA polymerase III, beta subunit [Staphylococcus aureus A10102]
 gi|282594129|gb|EFB99117.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9765]
 gi|282597092|gb|EFC02051.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus C160]
 gi|282763326|gb|EFC03456.1| DNA polymerase III, beta subunit [Staphylococcus aureus A8117]
 gi|283469231|emb|CAQ48442.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus ST398]
 gi|283789078|gb|EFC27905.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus A017934/97]
 gi|285815729|gb|ADC36216.1| DNA polymerase III beta subunit [Staphylococcus aureus 04-02981]
 gi|291096900|gb|EFE27158.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 58-424]
 gi|291465517|gb|EFF08049.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus M809]
 gi|294823378|gb|EFG39807.1| DNA polymerase III [Staphylococcus aureus A9754]
 gi|294968331|gb|EFG44356.1| DNA polymerase III [Staphylococcus aureus A8819]
 gi|295127058|gb|EFG56702.1| DNA polymerase III [Staphylococcus aureus subsp. aureus EMRSA16]
 gi|296885911|gb|EFH24846.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC 51811]
 gi|297177266|gb|EFH36519.1| DNA polymerase III [Staphylococcus aureus A8796]
 gi|297577710|gb|EFH96423.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus MN8]
 gi|300887653|gb|EFK82849.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus TCH70]
 gi|302749913|gb|ADL64090.1| DNA-directed DNA polymerase beta subunit [Staphylococcus aureus
           subsp. aureus str. JKD6008]
 gi|304341530|gb|EFM07440.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus ATCC BAA-39]
 gi|312436857|gb|ADQ75928.1| DNA-directed DNA polymerase III beta subunit [Staphylococcus aureus
           subsp. aureus TCH60]
 gi|312828565|emb|CBX33407.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus ECT-R 2]
 gi|315129545|gb|EFT85537.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus CGS03]
 gi|315195228|gb|EFU25616.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus CGS00]
 gi|315197920|gb|EFU28253.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus CGS01]
 gi|320141419|gb|EFW33262.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus MRSA131]
 gi|320144402|gb|EFW36167.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus MRSA177]
 gi|323439697|gb|EGA97415.1| DNA polymerase III subunit beta [Staphylococcus aureus O11]
 gi|323443270|gb|EGB00887.1| DNA polymerase III subunit beta [Staphylococcus aureus O46]
 gi|329725853|gb|EGG62332.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 21172]
 gi|329731811|gb|EGG68171.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 21189]
 gi|329732483|gb|EGG68833.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus 21193]
          Length = 377

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|82749779|ref|YP_415520.1| DNA polymerase III subunit beta [Staphylococcus aureus RF122]
 gi|82655310|emb|CAI79690.1| DNA polymerase III beta chain [Staphylococcus aureus RF122]
          Length = 377

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VNGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|297184135|gb|ADI20254.1| hypothetical protein [uncultured Sphingobacterium sp. EB080_L08E11]
          Length = 373

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 177/386 (45%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     II+  NT+P+  + L +   G L + AS  E  ++  +   
Sbjct: 1   MKFIVSSSKLLKQLQLIGGIIQSNNTLPILDNFLFELKQGELTVSASDLETMMSVNLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+  V A  L D ++   +      F E     E+  +     + L      EFP 
Sbjct: 61  SEDHGAAAVPAKTLLDTLKTFPEQPLTFTFDEGAHSIEL--ASDYGKYSLAYIDGEEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   +  L +  L   + +T FA   +E+R  ++G+FF      L    VATD H+
Sbjct: 119 FPELEDASTANLPAEALVTGITKTLFATGNDELRPVMSGVFFQFESNSLTF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V         A     I+P+K +  +   LS   S V+V  + +      +++ +  R
Sbjct: 177 L-VRYRRTDLGAADTAEFIMPKKPLNMLRGSLSYDSSEVEVVYNNTNARFTFDNVVLVCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP SN   + ++ +    +V RV+I S+     ++L L+  ++ ++ +
Sbjct: 236 LIDGKYPNYEAVIPQSNPNVMLIDRSAFSSSVKRVAIFSNKTTHQIRLKLAGAEISVSAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +PD   KA E ++  Y    M+I FN ++LLE++ N+ S     D V   + + N +  +
Sbjct: 296 DPDFSNKAHERISCDYQGDDMEIGFNSRFLLEMLSNLGS-----DNVRMEMSAPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       ++  N   ++MP+ +
Sbjct: 351 IPAD-----GMNDGENLLMLVMPVML 371


>gi|327438161|dbj|BAK14526.1| DNA polymerase sliding clamp subunit [Solibacillus silvestris
           StLB046]
          Length = 378

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 180/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R  +L  L    + +  K TIP+   + +   +  + +  S  +I I   IP  
Sbjct: 1   MKFNILRDRLLAGLNDVMKAVSSKTTIPILTGIKIDVTNEGMTLTGSDADITIQTFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A +  +I+RKL          E   G    I  G S F+L  
Sbjct: 61  ENGEQIMDITQTGSIVLQARMYNEIIRKLPTNEV---EIEITNGYATIIRSGKSEFHLIG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   E      F + + +LK+++  T FA+AT E R  L G+ + +  +   L 
Sbjct: 118 LDATEYPQLPEIAADRQFTIPTDLLKSVIRETVFAVATSESRPVLTGVNWKVEGDA--LI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA  +V++      + S+++P K++ E+ +IL   ++ V++ L+   +    
Sbjct: 176 CVATDSHRLARRKVNLENLPNDITSVVIPGKSLNELNKILEDTNNPVQIVLTNQHVLFKT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-SL 290
           + +    RL++G +P+   +IP      + +N  +L QA+DR S+++   R   V+  +L
Sbjct: 236 DDVLFFSRLLEGNYPDTSRLIPEEFKTMITINGKSLLQAIDRASLLAREDRNNVVRFETL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +  + ++ ++P++GK  E + V       + I F+ KY++E +  I   +     VV  
Sbjct: 296 ENQTVEISSNSPEIGKVEEQIQVESLEGENLKISFSAKYMMEALKAIDGQD-----VVIE 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R    D+            +++P+R
Sbjct: 351 FTGAMRPFILRSVADDAI---------LQLILPVR 376


>gi|300934348|ref|ZP_07149604.1| DNA polymerase III subunit beta [Corynebacterium resistens DSM
           45100]
          Length = 394

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 171/399 (42%), Gaps = 28/399 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           + TV + D    LG   R +  K T PV   VL++AND  L +     E+     I A V
Sbjct: 7   RFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFDREVSTQITINAEV 66

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G I ++  L+ DIV  L D       KE    T+V ++ G S F L +    ++P  
Sbjct: 67  DEPGRILIAGKLVNDIVGSLPDKPITLELKE----TKVLVTSGSSRFELPAMTIEDYPEL 122

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                V        +    V +   A   ++    L G+   ++ E++ +   ATD  RL
Sbjct: 123 PSLPGVTGTIDP-HLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTM--AATDRFRL 179

Query: 182 AVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLS-------ESRIHLNI 232
           AV  +    AQ     ++++P + + +  R L +     +++++        +  + +  
Sbjct: 180 AVRTLQWNPAQADGQATLLIPARTLSDTARSLDAQSSDPIEIAVGSGDSIGQDGLLGIAT 239

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +S   + RL+D EFP ++ ++P S+     V    L+ A+ RVS+++  R   +++    
Sbjct: 240 DSRHTTTRLLDAEFPKFRPLLPTSHTAVASVEIAPLQDAIRRVSLVA-DRNSQIRMQFEE 298

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L ++    ++G A E +   +   P++I FN  YL E +  I +       VVF    
Sbjct: 299 GSLTLSAGGSEVGSATEQLQCAFAGEPLEIAFNPGYLKEGLGAIHT-----PRVVFGFTL 353

Query: 353 SNSSVFIR------GKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++    +        +     N    + +  Y+LMP+RI
Sbjct: 354 ASRPAIMIPDAGNLPEADAEGNFATPETDFTYLLMPVRI 392



 Score = 46.4 bits (109), Expect = 0.009,   Method: Composition-based stats.
 Identities = 27/183 (14%), Positives = 66/183 (36%), Gaps = 16/183 (8%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
                F +        +     ++ ++  +  L G+    N+E L L        R    
Sbjct: 3   NNNVRFTVPKDDFSTALGWVARSLPSKPTQPVLRGVLIEANDEGLVLSGFD----REVST 58

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LID 243
           ++ I A++ +   I++  K V +I+  L   D  + + L E+++ +   S    +  +  
Sbjct: 59  QITINAEVDEPGRILIAGKLVNDIVGSLP--DKPITLELKETKVLVTSGSSRFELPAMTI 116

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMT 298
            ++P     +P        ++     +AV +V+  +           V + L  + + M 
Sbjct: 117 EDYPE----LPSLPGVTGTIDPHLFSEAVGQVATAAGRDDTLPMLTGVHVELDGENVTMA 172

Query: 299 VDN 301
             +
Sbjct: 173 ATD 175


>gi|331700397|ref|YP_004397356.1| DNA polymerase III subunit beta [Lactobacillus buchneri NRRL
           B-30929]
 gi|329127740|gb|AEB72293.1| DNA polymerase III, beta subunit [Lactobacillus buchneri NRRL
           B-30929]
          Length = 379

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 177/395 (44%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R+   + L    R I  K TIP+   + + A    L +  S  +I I   + A 
Sbjct: 1   MKFSIGRTAFTKGLNTVSRAISTKTTIPILTGLKIVAGPDGLVLTGSDADISIETTLKAD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +IV+KL          EN    +  I+ G S+F +   
Sbjct: 61  DPDNMLVIESEGAIVLPARFFTEIVKKLPKDTITLEVGEN---FQTMITSGQSSFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   S  LA+ + K ++ +T  A++ +E R  L G+ F I++    + A
Sbjct: 118 DANNYPHLPEIQTNDSIPLAADLFKQIISQTVVAVSNQESRPILTGVHFVISDN--HVMA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +   I      ++P K++ E+ +++      V +S++E++    I 
Sbjct: 176 VATDSHRLSQRKVTLETPINGSYDFVIPGKSLTELSKMIDDGQDEVSLSVTENQALFVIG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           +     RL++G +P+   +IP S+D  +      L  A++R S++S   R   VK+++  
Sbjct: 236 NTLFYSRLLEGNYPDTTRLIPDSHDTRISFEAPELLAAIERASLLSHESRNNVVKITIDP 295

Query: 293 DK--LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           DK  + +  ++PD+G   E +         ++I FN  Y+ + + + +   +  D     
Sbjct: 296 DKKTVTIYGNSPDVGNVEEDLEPKSLEGNELEISFNPDYMKDALRSFTQATINID----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S+     +   +           +   ++ P+R
Sbjct: 351 FTSALRPFTLTPTED--------SDSFVQLITPIR 377


>gi|116871424|ref|YP_848205.1| DNA polymerase III subunit beta [Listeria welshimeri serovar 6b
           str. SLCC5334]
 gi|116740302|emb|CAK19420.1| DNA polymerase III, beta subunit [Listeria welshimeri serovar 6b
           str. SLCC5334]
          Length = 381

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379


>gi|315286762|ref|ZP_07872176.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596]
 gi|313630891|gb|EFR98583.1| DNA polymerase III, beta subunit [Listeria ivanovii FSL F6-596]
          Length = 381

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 DNGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379


>gi|294788719|ref|ZP_06753960.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453]
 gi|294483201|gb|EFG30887.1| DNA polymerase III, beta subunit [Simonsiella muelleri ATCC 29453]
          Length = 367

 Score =  311 bits (796), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 116/384 (30%), Positives = 206/384 (53%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R  +L+ L     I+ERK+T+P+  +VLL++ DG + I A+  EI+I      +  
Sbjct: 4   LQTDRDSLLKPLQAVTGIVERKHTLPILSNVLLESKDGRIHILATDLEIQIHTQGAENDK 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               +T +A  L DI+R L DGA +     +     + +  G S F LQ+ P  +FP+  
Sbjct: 64  GDFRLTTNAKKLQDILRALPDGAIVQL---DWADNRLTLKAGKSRFNLQTLPAEDFPTMS 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             +     F L     K+++ +  ++MA ++IRYYLNG+   + E  L+L  V+TDGHRL
Sbjct: 121 VNDSAQVRFSLTQETFKHMISQVQYSMAVQDIRYYLNGLLLQVEENQLRL--VSTDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A +  +I A ++K   +I+PRK V E+ ++L+  +  +++ L  ++I L      +  ++
Sbjct: 179 AYSVCEIEANLSKTE-VILPRKTVLELNKLLNQPNELIEIELLGNQIRLTCNDTVIVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP+Y  VIP  NDK   ++ T+L  A++R +I+++ + + VKL LS+  L ++  N
Sbjct: 238 IDGKFPDYNRVIPLDNDKIFLISRTDLLGALERSAILANEKFKGVKLFLSAGLLRVSCTN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A E + + Y    +++ FN  YL +++ N        D++   L + + S     
Sbjct: 298 NEQEEAQEELEIAYQGESLEVSFNINYLTDVLRNTHC-----DDIQIALGNEHKSSLFTK 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D+          +  YV+MPMRI
Sbjct: 353 PDE---------ADFKYVVMPMRI 367


>gi|126662353|ref|ZP_01733352.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38]
 gi|126625732|gb|EAZ96421.1| DNA polymerase III, beta-subunit [Flavobacteria bacterium BAL38]
          Length = 373

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 184/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L++ AS  E  +T  +   
Sbjct: 2   MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELDNNQLKVSASDLETTMTSTLEID 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ + A LL DI++   +       ++N   + V IS     + +   P  EFP 
Sbjct: 62  STSQGSVAIPAKLLLDILKTFPEQPLTFTVEDN---STVEISSNSGKYAIAYAPGEEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      + + VL   V +T FA   +++R  ++G+FF  + E   L  VATD H+
Sbjct: 119 AVVLDDPSKTLVPAEVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEG--LIFVATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         + +++   I+P+K +  +  IL + D+ V +  ++S    + E+  ++ R
Sbjct: 177 LVKYART-DVKASQVADFIMPKKPLNILKGILGASDAEVSIEYNDSNATFSFENYVLTCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +N      +V RV+I ++     ++L ++  +L ++ +
Sbjct: 236 LIDGKYPNYEAVIPKENPNKLLINRVQFLNSVRRVAIFANKTTHQIRLKIAGTELNISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N+SS     DE+   +   N +  +
Sbjct: 296 DIDYSNKADERLTCDYQGDDMQIGFNSRFLTEMLNNLSS-----DEIQLEMSMPNRAGIL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 351 TPVD-----GLDEGETVTMLVMPVML 371


>gi|225630799|ref|YP_002727590.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi]
 gi|225592780|gb|ACN95799.1| DNA polymerase III, beta subunit [Wolbachia sp. wRi]
          Length = 385

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 130/384 (33%), Positives = 218/384 (56%), Gaps = 20/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 21  MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 80

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+
Sbjct: 81  VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 138

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 139 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 196

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L+IL   +  +KV LS+ +I L      +  +
Sbjct: 197 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 255

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FPNY+ VIP S DK + +    L   +DRVS++ S +++++K SL    L +  +
Sbjct: 256 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 315

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +   A ES+ V YNE P++I FN +YLL+++  I       ++  F L   NS+  I 
Sbjct: 316 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGNSATIIT 369

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D  S           YV+MPMR
Sbjct: 370 DEDDSSV---------LYVVMPMR 384


>gi|298693324|gb|ADI96546.1| DNA polymerase III, beta subunit [Staphylococcus aureus subsp.
           aureus ED133]
          Length = 377

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVIELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|34495457|ref|NP_899672.1| DNA polymerase III subunit beta [Chromobacterium violaceum ATCC
           12472]
 gi|34101313|gb|AAQ57682.1| DNA-directed DNA polymerase, beta subunit [Chromobacterium
           violaceum ATCC 12472]
          Length = 369

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 113/385 (29%), Positives = 197/385 (51%), Gaps = 21/385 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           +  ER  +L+ L     I+ER++T+P+  +VL++   G +   A+  EI+IT A    + 
Sbjct: 4   LQAERDALLKPLLAVTGIVERRHTLPILSNVLIEKKGGQVGFLATDLEIQITTASSDELP 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
                +T SA  L DI+R +   A ++   E   G  + +  G S F LQ+ P  +FP  
Sbjct: 64  GEDFRLTTSAKKLQDILRAIPGNATVT--LEQLDGGRLVLKAGKSRFNLQTLPAEDFPLL 121

Query: 122 KEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   SF L+   LK L+ +  +AMA ++IRYYLNG+    +   ++L  VATDGHR
Sbjct: 122 SVGSAGESSFTLSQRELKRLISQVQYAMAVQDIRYYLNGLLMQTDGNQVRL--VATDGHR 179

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A  D+ A + K   +I+PRK + E+ ++L   D  +K+ +  +++  +  +  +  +
Sbjct: 180 LAFASADVAATLPK-AEVILPRKTIIELYKLLQDSDDEIKIEVLANQVRFSFGATVIISK 238

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++DG+FP+Y  VIP  NDK   +       A+ R +I+++ + + V+L L+  K+ +   
Sbjct: 239 VVDGKFPDYNRVIPLDNDKIFLIERLEFLHALQRAAILANEKFRGVRLVLAPGKMSILCT 298

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N +  +A E + + +    ++I FN  YLL+++ N+ +     D +      S+ S    
Sbjct: 299 NSEQEEAEEELEIAFQGGTLEIGFNINYLLDVLTNLPA-----DTLQLAFGDSSRSALFT 353

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D           N  Y++MPMRI
Sbjct: 354 IPD---------VSNFKYIVMPMRI 369


>gi|16799081|ref|NP_469349.1| DNA polymerase III subunit beta [Listeria innocua Clip11262]
 gi|16412423|emb|CAC95235.1| DNA polymerase III, beta chain [Listeria innocua Clip11262]
          Length = 381

 Score =  310 bits (795), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I   D KL 
Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIK--DNKLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379


>gi|257054091|ref|YP_003131923.1| DNA polymerase III subunit beta [Saccharomonospora viridis DSM
           43017]
 gi|256583963|gb|ACU95096.1| DNA polymerase III, beta subunit [Saccharomonospora viridis DSM
           43017]
          Length = 379

 Score =  310 bits (794), Expect = 2e-82,   Method: Composition-based stats.
 Identities = 99/394 (25%), Positives = 166/394 (42%), Gaps = 26/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG------LLEIKASGPEIEIT 54
           MKI VER  + E +    R +  +  +PV   VLL A          L I     E+  T
Sbjct: 1   MKIRVERDGLAEAVAWVARSLPSRPPVPVLGGVLLDAGGDSGDGADTLTISGFDYEVSAT 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
             +P+++   G   VS  LL DI + L         +    G  V+I+ G++ F L + P
Sbjct: 61  AGVPSTIAEGGRTLVSGRLLADITKALPAQPVDISVE----GARVSITCGNAKFSLPTMP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P     +   + E+A       V +   A   ++    L G+   I    L L  V
Sbjct: 117 VEDYPELPA-QPELAGEVAGDAFAQAVAQVAVAAGKDDTLPMLTGMRVEITGSTLTL--V 173

Query: 175 ATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           ATD  RLA+ E     A+     +++VP + + +  + L S  ++V++ L+     L + 
Sbjct: 174 ATDRFRLAMREFSWQPAEGITDSAVLVPARTLADAAKSLGSAGTTVQIGLAGGDGLLGLS 233

Query: 234 SLS--MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RLID EFP Y+ ++P        ++   L +A+ RVS+++  R   V+L   
Sbjct: 234 GGGKFTTTRLIDAEFPPYRQLLPSDYSSRAILHVPALTEAIKRVSLVA-ERGTQVRLEFE 292

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +     D G A E + V Y   P+ I FN  YL + +  + +     +       
Sbjct: 293 DGSLRLAAGGDDEGSAEEELPVDYEGEPVTIAFNPSYLADGLGALHA-----ERAELTFT 347

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + N    I+  D     N +      Y+LMP+R+
Sbjct: 348 TPNRPALIKPADD----NGEVVPGYLYLLMPVRL 377


>gi|282907049|ref|ZP_06314897.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           subsp. aureus Btn1260]
 gi|282329948|gb|EFB59469.1| DNA-directed DNA polymerase subunit III beta [Staphylococcus aureus
           subsp. aureus Btn1260]
          Length = 377

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPGQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|258423236|ref|ZP_05686128.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635]
 gi|257846565|gb|EEV70587.1| DNA polymerase III, beta subunit [Staphylococcus aureus A9635]
          Length = 377

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  IDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|228474178|ref|ZP_04058915.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119]
 gi|314935202|ref|ZP_07842555.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp.
           hominis C80]
 gi|228271873|gb|EEK13210.1| DNA polymerase III, beta subunit [Staphylococcus hominis SK119]
 gi|313656537|gb|EFS20276.1| DNA polymerase III, beta subunit [Staphylococcus hominis subsp.
           hominis C80]
          Length = 376

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 1   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKDNNVILTGSDSEISIEITIPKQ 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 61  VDGEDIVDITETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 118 LDPEQYPLLPQVSRDDAIQLSVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  + ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 176 CTATDSHRLAVRKLKLEDE-SENKNVIIPGKALSELNKIMSDNDEDIDIFFASNQVLFKV 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 235 GNVNFISRLLEGHYPDTTRLFPENYEIKLGLDNGEFYHAIDRASLLAREGGNNVIKLSTG 294

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +         + I FN KY+++ +  I      ++EV    
Sbjct: 295 NEVIELSSTSPEIGTVKEEVTATDVEGGNLKISFNSKYMMDALKAID-----NEEVEVEF 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 350 FGTMKPFILKPKADDSVTQ---------LILPIR 374


>gi|319893739|ref|YP_004150614.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius
           HKU10-03]
 gi|317163435|gb|ADV06978.1| DNA polymerase III beta subunit [Staphylococcus pseudintermedius
           HKU10-03]
          Length = 376

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 1   MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL          E     +  I+   S F L  
Sbjct: 61  VDGQEIINLVEPGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSAHSEFNLSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L   VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 118 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNE--LL 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +I    ++I+P KA+ E+ +I++  +  + +  + +++   +
Sbjct: 176 CTATDSHRLAVRKLKLEEEIED-KNVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N ++   A+DR S+++       +KLS  
Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 294

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++ ++  +P++G   E +         + I FN KY+++ +  I      ++EV    
Sbjct: 295 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NEEVEVEF 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD D+            +++P+R
Sbjct: 350 FGTMKPFILKPKDDDTVTQ---------LILPIR 374


>gi|291612474|ref|YP_003522631.1| DNA polymerase III, subunit beta [Sideroxydans lithotrophicus ES-1]
 gi|291582586|gb|ADE10244.1| DNA polymerase III, beta subunit [Sideroxydans lithotrophicus ES-1]
          Length = 367

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 116/383 (30%), Positives = 206/383 (53%), Gaps = 23/383 (6%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-V 63
           ++R+++L+ L     I+ERK  +P+  +VL++     +    +  EI+I   + A+ D  
Sbjct: 6   IDRNELLKPLQAVVGIVERKQPLPILSNVLIKKTKDSVRFITTDLEIQIEAQLRATFDAT 65

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
             SIT+SA  L +I+R + D + ++    +    ++ +    S F LQ+ P  +FP   E
Sbjct: 66  ESSITISAKKLQEILRAIPDNSMVTL---DNQDNKLLVKANKSRFSLQTLPAQDFPILSE 122

Query: 124 -EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                   E+   VL+ L+    +AMA ++IRYYLNG+   I+E  +KL  +ATDGHRLA
Sbjct: 123 QLIGASKIEIEQGVLRRLLSSVQYAMAQQDIRYYLNGVLLVIDETTIKL--IATDGHRLA 180

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
               ++  +  K   +I+ RK V E+L++L+  +  V++ L+E ++ ++   + ++ ++I
Sbjct: 181 FISEELKEKHQKQE-VILSRKTVNELLKLLADSEDKVQLELAEKQVRISFADVILTSKVI 239

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG+FP+Y  VIP  +   L ++   + QA+ R +I+S+ + + V+L L+   L +   N 
Sbjct: 240 DGKFPDYNRVIPA-HTNHLTLDRLTILQALQRAAILSNEKFRGVRLLLTEKNLRVISSNS 298

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +  +A E +   Y+  P+DI FN  YLL+ I+NI++       V       NSS+ I   
Sbjct: 299 EQEEAQEDIENDYSGAPLDIGFNVNYLLDGINNINTQT-----VTLSFGDQNSSLLITIP 353

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
           +         K +  YV+MPMRI
Sbjct: 354 E---------KSDYKYVVMPMRI 367


>gi|323463202|gb|ADX75355.1| DNA polymerase III, beta subunit [Staphylococcus pseudintermedius
           ED99]
          Length = 377

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFSIQRDYFITQLNDTLKAISPRATLPILTGIKIDATNEGIVLTGSDSEISIEITIPNQ 61

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL          E     +  I+   S F L  
Sbjct: 62  VDGQEIINVVEPGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSAHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L   VLKN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPQVSSDDALQLPVKVLKNIIAQTNFAVSTSETRPVLTGVNWLIQQNE--LL 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +  +I    ++I+P KA+ E+ +I++  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLKLEEEIED-KNVIIPGKALAELNKIMTDSEDHIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +N ++   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTSRLFPENYEIKLGLNNSDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             ++ ++  +P++G   E +         + I FN KY+++ +  I      ++EV    
Sbjct: 296 DTQIELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NEEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD D+            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDTVTQ---------LILPIR 375


>gi|254520695|ref|ZP_05132751.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA]
 gi|226914444|gb|EEH99645.1| DNA polymerase III subunit beta [Clostridium sp. 7_2_43FAA]
          Length = 366

 Score =  310 bits (794), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M    E+  + E +  A + I  K T+P+   + + A +  L +  S  ++ I   + A 
Sbjct: 1   MIFICEKQKLQEGISIANKAITGKTTMPILEGIYINAKNEGLTLIGSDMDVSIETKVDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +I+RKL +        EN++   + I+   S F L      ++P+
Sbjct: 61  ILEEGMIVIDARIFGEIIRKLPNSDIKIETLENDI---IQITCEKSVFNLVYMNGEDYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S E++ ++LKN+++ T FA+A +E R  L GI F +  ++L L  VA DG+R
Sbjct: 118 LPSINENLSVEVSQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV    +         +++P K + E+ +IL      VK++ + + I  N+ +  +  R
Sbjct: 176 LAVRSEFLDND--NEIEVVIPGKTLNEVSKILEDVSDIVKITFTNNHILFNLNNTKVISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299
           L+DG+F NY +++P  +   + VN   L+  ++R S+M+       +KL +  + + +T 
Sbjct: 234 LLDGKFVNYSSLLPQEHKILVDVNKQQLQSCIERASLMAKDSNSNLIKLEVQEENMIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E + +     P+ I FN +YLL+++ N+      DDEV   + SS S   I
Sbjct: 294 -NSQLGKVREELTINLQGEPIQIAFNSRYLLDVLKNVD-----DDEVKLEMTSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K+ D         N+ Y+++P+R+
Sbjct: 348 KCKNTD---------NSKYLVLPVRL 364


>gi|220930852|ref|YP_002507760.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168]
 gi|219992162|gb|ACL68765.1| DNA polymerase III, beta subunit [Halothermothrix orenii H 168]
          Length = 367

 Score =  309 bits (793), Expect = 3e-82,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 188/385 (48%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           M+ T+ + D    +    R +  KNT+P+   + L+A  D  L +KA+  E+ I   + A
Sbjct: 1   MEFTISQKDFSRSINIVQRAVSSKNTMPILTGIYLEARKDKGLHMKATDLELGIEYWVKA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G I + A  L  I+R+L D      FK +    E  ++   S F ++ F   EFP
Sbjct: 61  DIITEGKIVLPASHLSGIIRELPDDNI--NFKADLDKYEAELTCLSSRFKIKGFDADEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E    +   L    L  L++   F+ +T++ +  L G    I  +  K+  VAT+ +
Sbjct: 119 QLPEVNIPHKITLNCGDLNRLIDEVKFSTSTDQTQPALTGGSMVI--DSGKIRMVATNTY 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+++ +D+         +I+P   + E+  +L   D  V++ + ++ +  N   + +  
Sbjct: 177 RLSLSSLDLDGSPEGKKEVILPGNTLSELSHLLDD-DGEVEILIGDNYVRFNFNGIVLVS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R+I+G+FPNYQ V+P   + ++RV+  NL ++V RVS+++ +    + +S+  +K+ +T 
Sbjct: 236 RVIEGQFPNYQQVLPKEYNTKVRVDRNNLLRSVRRVSLIARLDSNVISISVKDNKMIITS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + + G A E + +       +I  +  YLL+++  ++     DD V+  L    + + +
Sbjct: 296 QDSEEGFAREEIEIESQGPEQNINIDAGYLLDVLKVLN-----DDVVILELIGPLNPLTL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           +         K+N  +  Y++MP+R
Sbjct: 351 K---------KENSDDFIYLVMPVR 366


>gi|283767792|ref|ZP_06340707.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus H19]
 gi|283461671|gb|EFC08755.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus H19]
          Length = 377

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 186/394 (47%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTGIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           E+++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 ENVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|73661311|ref|YP_300092.1| DNA polymerase III subunit beta [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
 gi|72493826|dbj|BAE17147.1| DNA polymerase III beta subunit [Staphylococcus saprophyticus
           subsp. saprophyticus ATCC 15305]
          Length = 376

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 91/394 (23%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R   +  L    + I  + T+P+   + ++  +  + +  S  EI I   IP  
Sbjct: 1   MEFTIRRDYFINQLNDTLKAISPRTTLPILTGIKIEVKNNEVILTGSDSEISIEITIPKQ 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           VD          GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 61  VDGEDIIDIVETGSVVLPGRFFVDIIKKLPGKEVKLSTNE---QFQTLITSGHSEFNLSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 118 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV +V +    ++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 176 CTATDSHRLAVRKVALE-DDSENKNVIIPGKALSELNKIMSDSEEDIDIFFASNQVLFKV 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 235 GNVNFISRLLEGHYPDTSRLFPENYEIKLGIDNGEFYHAIDRASLLAREGGNNVIKLSTG 294

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +     +   + I FN KY+++ +  I      +DEV    
Sbjct: 295 NELVELSSTSPEIGTVKEDVKASNVDGGNLKISFNSKYMMDALKAID-----NDEVEVEF 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 350 FGTMKPFILKPKDDDSVTQ---------LILPIR 374


>gi|262377660|ref|ZP_06070880.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145]
 gi|262307419|gb|EEY88562.1| DNA polymerase III, beta subunit [Acinetobacter lwoffii SH145]
          Length = 382

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 110/400 (27%), Positives = 200/400 (50%), Gaps = 33/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M++ + +  +L +L H    +ER++T+ +  ++ +Q     L +  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNLKIQVTAQALTVTGSDLEVELVASTALA 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L DI + L   A +      +      +  G+S F L + P  +
Sbjct: 61  EGACLQEGETTVPARKLIDICKSLPSAALVDLHITEDQ--RCILKSGNSRFVLGTLPADD 118

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +P    E        +    LK L E+T FAMA +++R+YL G    I+   L+  AV T
Sbjct: 119 YPLLNTENTQGTQVTVTQRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDANQLR--AVTT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-- 234
           DGHRLA+ E    +   +    IVPRKAV E+ R+LS +D  + + +    +++ I    
Sbjct: 177 DGHRLALCETVAQSTATQPIQAIVPRKAVAELQRLLSVEDEQLSLLIGRELLNVTINMSS 236

Query: 235 ---------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
                    +  + +LIDG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ 
Sbjct: 237 RDKEQADIIVRFTTKLIDGKFPDYRRVIPRGGDKVVMIAHDVFKQSLQRVAILSNEKLRG 296

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V L+ ++D L +  +NP+  +AIE + + Y + P+++ FN +YL+E++  +       D+
Sbjct: 297 VFLNFNADSLQLRANNPEQDEAIEDLVIQYADSPLEMSFNAQYLIEVLGVLDG-----DD 351

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +  +N SV ++              +  YV+MPMR+
Sbjct: 352 VSMTMTEANQSVLVQDP---------AHTDQTYVVMPMRV 382


>gi|195546611|ref|YP_002117639.1| p081 [Rhizobium phage 16-3]
 gi|102642576|gb|ABF71357.1| p081 [Rhizobium phage 16-3]
          Length = 378

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 130/386 (33%), Positives = 202/386 (52%), Gaps = 30/386 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + R+ +  +L +  R++E +NTIP+   + L A DG L +  +  +I  T    A 
Sbjct: 21  MKLLIGRAGLTRVLTNVSRVVEARNTIPILSSLRLSAADGKLTVTGTDLDIVATDTAAAD 80

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++ V A LL DI +K      +S     E   ++ +  G S F L + P ++FP 
Sbjct: 81  VTEGGAVCVDAKLLSDIAKKTGGDVSLS-----EDKGQLIVKSGRSRFSLPALPAADFPD 135

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATDGH 179
               EY  SF++    L  L     FA++TEE R+YLNGIF H++E+ D  + AVATDGH
Sbjct: 136 LSGGEYTASFDMD---LAALFAPVSFAISTEETRFYLNGIFLHLHEDGDYFIRAVATDGH 192

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+  +     + A    +IVPRK VG + +       +V+VS+SE++I +      ++ 
Sbjct: 193 RLSRHQAAYPGEDA-FKGVIVPRKTVGLLPK------GTVRVSVSETKIRIASGEFVLTS 245

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LIDG FP+YQ VIP  NDK++     ++RQA  RVS++SS R +AVKLS +  +  + V
Sbjct: 246 KLIDGTFPDYQRVIPTQNDKKIVFGSDDMRQAASRVSVISSERGRAVKLSFAEGEAKLAV 305

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G A + + V Y+  P+DI FN  YL E++    +      ++   L    S    
Sbjct: 306 SSPETGSATDEIFVNYDGDPIDIGFNAAYLTELVGIFPA-----GDITLALADGGSPSVF 360

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +                VLMPMR+
Sbjct: 361 TSEKAPEL---------LAVLMPMRV 377


>gi|310825636|ref|YP_003957993.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612]
 gi|308737370|gb|ADO35030.1| DNA polymerase III subunit beta [Eubacterium limosum KIST612]
          Length = 371

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 202/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +  R  ++  L  A + +  K T+PV   +L Q  +  L + ++  EI +  +IPA+
Sbjct: 1   MKFSCSRDALINALSIAQKGVSNKTTLPVLEGILFQVYNNQLVLTSTDLEIGVQTSIPAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD+ G I +S++L+ +++RKL  G ++ F K++    +V I    SNF ++ FP  EFP 
Sbjct: 61  VDMDGEIILSSNLITEVIRKL-SGEEVFFQKDD--SNQVKIECLLSNFTIKGFPTDEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    +SF + + VLK ++  T F++A  E    L G+   I  + + L  +A DG+R
Sbjct: 118 FPEVIEEHSFVIEAGVLKEMIRGTIFSVAVSENIPVLTGLKMEIENDAISL--IALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++    +   I    S+I+P K++ E+ ++LS  + +V V  S+++I   + +   + R
Sbjct: 176 LSLKRGKLKEAIDGSISVIIPGKSMNELNKLLSGYNENVIVKFSKTQIFFEMGNTQFTSR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF NY+++IP     +++V+   L ++ +R ++++   +   +K+  + D+L +T 
Sbjct: 236 LLEGEFINYKHIIPTEKATQVKVSRKLLLESSERAALLAREGKNNLIKMDFNIDQLILTS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E + +     P+ I FN K+ ++ +  I       DE+   L +S     I
Sbjct: 296 -NAEIGDVFEVIPIENQGDPIKIAFNSKFFIDALKVID-----RDEMSIELTTSVGPAVI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D   +          Y+++P+RI
Sbjct: 350 VPADGSDE--------FIYLILPVRI 367


>gi|47097284|ref|ZP_00234842.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a
           F6854]
 gi|47014329|gb|EAL05304.1| DNA polymerase III, beta subunit [Listeria monocytogenes str. 1/2a
           F6854]
          Length = 378

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/380 (26%), Positives = 186/380 (48%), Gaps = 21/380 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ ++L     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLSELNKLLDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNN 369
              +     +R KD  + N 
Sbjct: 351 FSGTMRPFVLRPKDAANPNE 370


>gi|166366608|ref|YP_001658881.1| DNA polymerase III subunit beta [Microcystis aeruginosa NIES-843]
 gi|166088981|dbj|BAG03689.1| DNA polymerase III beta subunit [Microcystis aeruginosa NIES-843]
          Length = 382

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 187/396 (47%), Gaps = 27/396 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK T  +S++   L    R +  + T PV  +VL  A++  G + + A    + I  +  
Sbjct: 1   MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L +G      +ENE   E ++       + F ++    
Sbjct: 61  AEVVEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP            L    L   ++   FA + +E +  L G+      + L+    A
Sbjct: 121 DEFPELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGVHLTKTVDCLEF--AA 178

Query: 176 TDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLN 231
           TDGHRLAV +  +      +   ++ +P +A+ E+ R++++K    ++ + + +S++   
Sbjct: 179 TDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQVIFE 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL- 290
           +    ++ R ++G +P Y  +IP S D+ L ++   L + ++ V+++S  +   VK SL 
Sbjct: 239 MGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLD 298

Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             +D+L + V++PD+G A ESM         DI FN KYL++ +  + +++     +  +
Sbjct: 299 SENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQ 353

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L++S   V                +   Y++MP++I
Sbjct: 354 LNASTQPVIFTP---------LGGLKMTYLVMPVQI 380


>gi|317126743|ref|YP_004093025.1| DNA polymerase III subunit beta [Bacillus cellulosilyticus DSM
           2522]
 gi|315471691|gb|ADU28294.1| DNA polymerase III, beta subunit [Bacillus cellulosilyticus DSM
           2522]
          Length = 380

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 101/397 (25%), Positives = 185/397 (46%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK ++ R   ++ + H  + I  + TIPV   + ++A+   + +  S  +I I   IP  
Sbjct: 1   MKFSINRDQFVQSVQHVSKAISPRTTIPVLTGIKIEASFDGVTLTGSDSDISIESFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL +        E  + T   +  G S F L  
Sbjct: 61  DEEIQNVELEQPGSIVLPARFFAEIVKKLPEDTIELSVSEQFVTT---LKSGSSVFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +E+P   E E    F+L + +LKN++ +T FA++T E R  L G+ + I  E+  L 
Sbjct: 118 LDPNEYPRLPEIEEDNVFKLKTDLLKNIIRQTVFAVSTVETRPILTGVHWAI--EEGTLA 175

Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+               ++++P K++ E+ +IL   +  V + ++E++I  
Sbjct: 176 CTATDSHRLAMRNAKAETNTNDLSFSNVVIPGKSLNELSKILDDNEEWVDIIVTENQILF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288
             ++L    RL+DG +P   N+IP ++   +++      QA++R  ++S   +   V L 
Sbjct: 236 KAKNLLFFSRLLDGNYPATNNMIPTNSKTNVKLETKKFMQAIERALLLSRDGKNNVVNLK 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +LS+  L +T   P++GK  E +    +N   + I FN K +++ +  I S      EV 
Sbjct: 296 TLSNTHLEITSVTPEVGKVTEDVATLDFNGEELRISFNGKNIIDALRVIDST-----EVT 350

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                + S   I+  + +         N  ++  P+R
Sbjct: 351 IDFTGAMSPFVIKPTEHE---------NMLHLFSPVR 378


>gi|159029576|emb|CAO90235.1| dnaN [Microcystis aeruginosa PCC 7806]
          Length = 382

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 187/396 (47%), Gaps = 27/396 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK T  +S++   L    R +  + T PV  +VL  A++  G + + A    + I  +  
Sbjct: 1   MKFTSSQSELNSNLSLVSRAVASRPTHPVLGNVLFCADEEKGEISLTAFDLSLGIRTSFR 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPE 115
           A V   G IT+ A LL DIV +L +G      +ENE   E ++       + F ++    
Sbjct: 61  AEVLEGGKITLPAKLLNDIVSRLGEGEITISVEENENDEEHSLAFLKTASAQFQIRGMKA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP            L    L   ++   FA + +E +  L G+      + L+    A
Sbjct: 121 DEFPELPTVADGEIVNLPIVALTEGLKGALFAASGDETKQVLTGVHLTKTVDCLEF--AA 178

Query: 176 TDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLN 231
           TDGHRLAV +  +      +   ++ +P +A+ E+ R++++K    ++ + + +S++   
Sbjct: 179 TDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDSQVTFE 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL- 290
           +    ++ R ++G +P Y  +IP S D+ L ++   L + ++ V+++S  +   VK SL 
Sbjct: 239 MGEQRLTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLD 298

Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             +D+L + V++PD+G A ESM         DI FN KYL++ +  + +++     +  +
Sbjct: 299 SENDRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQ 353

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L++S   V                +   Y++MP++I
Sbjct: 354 LNASTQPVIFTP---------LGGLKMTYLVMPVQI 380


>gi|314934959|ref|ZP_07842318.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87]
 gi|313652889|gb|EFS16652.1| DNA polymerase III, beta subunit [Staphylococcus caprae C87]
          Length = 377

 Score =  309 bits (793), Expect = 4e-82,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 184/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A D  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFINQLNDTLKAISPRTTLPILTGIKIDAKDNEVILTGSDSEISIEITIPKQ 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVEISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   E     + +L+  V+KN++ +T+FA++T E R  L G+ + I + +  L 
Sbjct: 119 LDPDQYPLLPEVSRDDAIQLSVKVIKNIIAQTNFAVSTSETRPVLTGVNWLIQDNE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +    ++  ++I+P KA+ E+ +I+S  D  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DTSENKNVIIPGKALSELNKIMSDSDEDIDIFFASNQVLFRV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L +   +   A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLGIINGDFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++ + ++  +P++G   E +         + I FN KY+++ +  I      +DEV    
Sbjct: 296 NELVELSSTSPEIGTVKEEVTANDVEGGNLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ KD DS            +++P+R
Sbjct: 351 FGTMKPFILKPKDDDSVTQ---------LILPIR 375


>gi|304315539|ref|YP_003850684.1| DNA polymerase III subunit beta [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
 gi|302777041|gb|ADL67600.1| DNA polymerase III, beta subunit [Thermoanaerobacterium
           thermosaccharolyticum DSM 571]
          Length = 370

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 189/388 (48%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ++  +L  +    + +  + T+P+   +LL A D  L + ++  EI I   + A 
Sbjct: 1   MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLTAKDNKLVMYSTDMEIGIECKVDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI VS+ +  D+VRKL +        ++     VNI  G S F +      EFP 
Sbjct: 61  IVEEGSIVVSSKVFSDLVRKLPENTIYFTTDQD---YIVNIKCGLSEFTISGNSSEEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +F +  +VLK +++ T F +A +  R  L GI   I++    +  VA DG+R
Sbjct: 118 IPEVLKEITFSINQNVLKEMIKMTSFCVAQDMTRPILTGILMEISKN--TINMVALDGYR 175

Query: 181 LA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +A       D++ +     S+++P     E++RI+   D +V VS + ++I   I    +
Sbjct: 176 MAIKKYISEDLLLKEFDDFSVVIPGTTANELVRIMEDNDDNVYVSFTGNQILFEINDTKV 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L+DG + NY+ VIP      + +   +L  A+DR S+++S +   +K + +  +L +
Sbjct: 236 ISKLLDGNYMNYKAVIPKDFKSIVIIEKDDLIGAIDRASLLASNKSNLIKFTFNERELII 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N + GK  E +N+      ++I FN +YLLE +  I S     +++   + +S + +
Sbjct: 296 SS-NSEKGKMSERVNIDIEGNLIEIAFNSRYLLEALRVIDS-----EKIKMNMINSINPM 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D         +  Y+++P+++
Sbjct: 350 IITPVEDD---------DYLYMVLPVKL 368


>gi|282895332|ref|ZP_06303534.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9]
 gi|281199638|gb|EFA74498.1| DNA polymerase III, beta chain [Raphidiopsis brookii D9]
          Length = 384

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 93/398 (23%), Positives = 188/398 (47%), Gaps = 29/398 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T P+  +VLLQA++    + + A    + I  +  
Sbjct: 1   MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADENTNQVSLTAFDLSLGIRTSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQIS-----FFKENELGTEVNISHGDSNFYLQSF 113
           A V   G+I + A +L DI  +L +G           K    G    +   +  + L+S 
Sbjct: 61  AEVIEGGAIALPAKILVDITSRLPEGDITLDNQSGRSKAKAEGINFILKPKNGKYELRSM 120

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              EFP     E   + +L ++ L   ++ + FA +++E +  L G+   + ++ L+   
Sbjct: 121 GAEEFPELPLIENSNAIQLTTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEF-- 178

Query: 174 VATDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIH 229
            ATDGHRLAV     +   +  +   + VP +A+ E+ R+L+    + +V + L E +I 
Sbjct: 179 AATDGHRLAVLETINERPLENDEQLEVTVPARALRELQRMLNHSASEEAVSLYLDEGQIV 238

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
              ++  ++ R ++G++P+Y+ +IP   +++L +        ++R++I++  +   VK++
Sbjct: 239 FAWQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNNIVKIN 298

Query: 290 LS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           ++    ++ ++ +  D+G A ESM    +   + I FN KYLLE +  + S      E+ 
Sbjct: 299 INTGDQEITLSCEAQDVGNATESMPAQISGEDIVIAFNVKYLLEGLKELPST-----EIQ 353

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             L+ S + V                +   Y+ MP+++
Sbjct: 354 MHLNQSLTPVIFTP---------LGGLKMTYLAMPVQL 382


>gi|161723112|ref|YP_288065.2| DNA polymerase III subunit beta [Thermobifida fusca YX]
          Length = 380

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 29/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGA 56
           MK  VER  + + +    R +  + ++PV   +LL A+D      L + +   E+    +
Sbjct: 1   MKFRVERDVLADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVS 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +   +D  G I VS  LL +IVR L         + +  G +V +S G + F + + P  
Sbjct: 61  VDVDIDEPGRILVSGKLLAEIVRNLPPQT----VEVSTDGAKVVVSCGSAKFTILTLPVE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+        +  + S      V +   A   ++    L G+   I    + L  V+T
Sbjct: 117 DYPTLPAMP-ALTGSVLSDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIH 229
           D +RLAV E+    +   + ++ +VP K + +  + L+   + + ++LS      E  I 
Sbjct: 174 DRYRLAVRELTWTPEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIG 232

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                   + RL++GEFP Y+ ++P S +    V      +AV RVS+++  R   ++LS
Sbjct: 233 FEGGGRRTTTRLLEGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVA-ERNTPLRLS 291

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +SD+L +     +  +A+E ++       + I FN  +LL+ ++ I SD         +
Sbjct: 292 FTSDRLVLEAGTGEEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIESDV-----AHLQ 346

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +S     I GK  D     D      Y++MP+RI
Sbjct: 347 FTTSTKPAIITGKPADDGTASD----YRYLIMPVRI 378


>gi|313625801|gb|EFR95417.1| DNA polymerase III, beta subunit [Listeria innocua FSL J1-023]
          Length = 381

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I   D KL 
Sbjct: 118 LDSMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIK--DNKLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 ENGQVEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379


>gi|289433375|ref|YP_003463247.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|289169619|emb|CBH26153.1| DNA polymerase III, beta subunit [Listeria seeligeri serovar 1/2b
           str. SLCC3954]
 gi|313640126|gb|EFS04744.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL S4-171]
          Length = 381

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 101/395 (25%), Positives = 191/395 (48%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E   KL 
Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKEN--KLS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           AVATD HRLA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   +
Sbjct: 176 AVATDSHRLALREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKL 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSL 290
           + L    RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L
Sbjct: 236 KDLLFYSRLLEGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLITL 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + ++ ++ ++P++G   E++    +    + I FN KY+++ +          D++   
Sbjct: 296 DNGQVEVSSNSPEVGNVSENVFSQSFTGEEVKISFNGKYMMDALRAFEG-----DDIQIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     +R KD  + N          ++ P+R
Sbjct: 351 FSGTMRPFVLRPKDATNPNEI------LQLITPVR 379


>gi|113953564|ref|YP_729240.1| DNA polymerase III subunit beta [Synechococcus sp. CC9311]
 gi|113880915|gb|ABI45873.1| DNA polymerase III, beta subunit [Synechococcus sp. CC9311]
          Length = 385

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 177/399 (44%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKLVCSQAELNAALQLVSRAVASRPTHPVLANVLLTADAGTDRLSLTGFDLNLGIQTSLA 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASVD  G++T+ A LL +IV K            +    +V ++    ++ ++  P  +F
Sbjct: 61  ASVDTSGAVTLPARLLGEIVSK-LSSDSPVSLSSDAGADQVELTSSSGSYQMRGMPADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   +  +  + L   +  T FA + +E +  L G+    N++  +L A +TDG
Sbjct: 120 PELPLVENGTALRVDPASLLKALRATLFASSGDEAKQLLTGVHLRFNQK--RLEAASTDG 177

Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLA+  V+                 ++ +P +++ E+ R+++S      V +     ++
Sbjct: 178 HRLAMLTVEDALQAEISAEESEPDELAVTLPARSLREVERLMASWKGGDPVSLFCERGQV 237

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
            +      ++ R ++G +PNY+ +IP    + + ++      A++R+++++      V++
Sbjct: 238 VVLAADQMVTSRTLEGTYPNYRQLIPDGFSRTIDLDRRAFISALERIAVLADQHNNVVRI 297

Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +       + ++ D  D+G   ES+    N   + I FN +Y+L+ +  +       D V
Sbjct: 298 ATEPATGLVQISADAQDVGSGSESLPAEINGDAVQIAFNARYVLDGLKAMDC-----DRV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++  +   +   + D            Y++MP++I
Sbjct: 353 RLSCNAPTTPAILTPANDD--------PGLTYLVMPVQI 383


>gi|23097457|ref|NP_690923.1| DNA polymerase III subunit beta [Oceanobacillus iheyensis HTE831]
 gi|22775680|dbj|BAC11958.1| DNA-directed DNA polymerase III beta chain [Oceanobacillus
           iheyensis HTE831]
          Length = 378

 Score =  309 bits (792), Expect = 5e-82,   Method: Composition-based stats.
 Identities = 94/395 (23%), Positives = 188/395 (47%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T++R  ++  + +  + I  +  IP+   + ++  +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQRDKLINGVSNVMKAISARTVIPILTGMKIEVKNHGVTLTGSDSDISIEYYIPIE 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            D          G+I + A    DIVRKL + + +    +++L   V I+ G + F L  
Sbjct: 61  EDGIVHVENIEEGTIILQAKYFPDIVRKLPE-STVDIVVDDQLN--VRITSGKAEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + +   SFEL   +LK+++++T FA++T E R  L G+   + +    L 
Sbjct: 118 QSAEEYPQLPKVQTENSFELPIDLLKSMIKQTVFAVSTMETRPILTGVNLKLVDNS--LS 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA  E+ +     ++  I+VP K++ E+ +IL   + +V++S++ ++I    
Sbjct: 176 FTATDSHRLARREIPVSNAPIEISQIVVPGKSLNELNKILGDSEETVEISVTNNQILFRT 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           + L+   RL+DG +P    +IP  +  ++++    L   +DR S+++   R   VK +  
Sbjct: 236 KHLNFLSRLLDGNYPETSRLIPEQSKTKIQLKTKELLGTIDRASLLAKEERNNVVKFNAP 295

Query: 292 SDKLC-MTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + +  ++ ++P++G  +E +         + I F+ KY+++ +  I       DEV   
Sbjct: 296 GNSMIEISSNSPEVGNVVEEITADQMEGEDVKISFSSKYMIDALKAIE-----YDEVQIE 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +     IR    DS            +++P+R
Sbjct: 351 FTGAMRPFIIRPVGDDSI---------LQLILPVR 376


>gi|268315580|ref|YP_003289299.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252]
 gi|262333114|gb|ACY46911.1| DNA polymerase III, beta subunit [Rhodothermus marinus DSM 4252]
          Length = 379

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 100/392 (25%), Positives = 186/392 (47%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV  +D+L+ L     ++  K T+P+   +L +A DG L + A+  EI I   +P  
Sbjct: 1   MRFTVSSNDLLKALTAVAGVVPSKATMPILECILFEAEDGALRLSATDLEISIVERLPIQ 60

Query: 61  VD----VCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           ++      G+  + V A  L + +R L D        E      V ++    ++ +  F 
Sbjct: 61  LELQNGKEGARRVAVPARRLLETLRALPDLPVQFSADE---SFNVTLTTDQGHYKMVGFD 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +++P+  E +  +S  + +++L+  +++T FA++ + +R  + GIFF +  E+ ++  V
Sbjct: 118 GADYPALPELDEAHSLTVDAALLRRAIQKTAFAVSKDTLRPAMMGIFFQVQPEEGRV--V 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGH   V               IVP KA   + ++ +  D +  + + E  +   +  
Sbjct: 176 ATDGH-RLVRLRLRELVSETPLEFIVPEKATSLVAKLAAQLDGTCTIRVDERHVAFEMGP 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  RLID  +PNY+ VIP  ND+ L V+      AV RV + +S     V+L+L  D 
Sbjct: 235 VRIISRLIDEVYPNYEAVIPVENDRRLVVDRDAFLSAVKRVGLYASSTTNQVRLTLEPDH 294

Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + +  ++ +   +A E +   Y+  PM I FN  YL E++ N+ S     DEVV    S 
Sbjct: 295 VEIAAEDIERASEAYERVPCAYDGEPMVIGFNAGYLTEVLGNVDS-----DEVVLEFSSP 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           N +  +   ++          +   ++MP+ +
Sbjct: 350 NRAGVVMPHEQ------AEGEDLLMLIMPVML 375


>gi|284041473|ref|YP_003391813.1| DNA polymerase III subunit beta [Conexibacter woesei DSM 14684]
 gi|283945694|gb|ADB48438.1| DNA polymerase III, beta subunit [Conexibacter woesei DSM 14684]
          Length = 369

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 189/386 (48%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+  R ++L  L    R+   +  I     V L A  G +E++A+  E+ +   +PA 
Sbjct: 1   MKISAAREELLAQLQTVSRVASTRGAIQALSGVQLIAAGGRVELRATDMEVGLRVPLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS+ + A L+ D+VR L         +  E   E+    G++ F++++    +FP 
Sbjct: 61  IEREGSVVLPARLIVDVVRSLSGPTATLELRPAEQDVELV--AGNAQFHIRTLRAEDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      + +      V R   + + +E R  L GI    +E +L++  VATD +R
Sbjct: 119 FPEPESEGVVSVPAKAFVETVLRVANSASRDETRPVLTGIMVSASERELRM--VATDSYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           L+V E  +   +       VP +A+ E+ R++   D   + V + ++++   I  + +S 
Sbjct: 177 LSVKETTLEEPLVGGFEANVPARALQELARLVQQIDGEQLSVGVRQNQVVFQIGEVVLSS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FPNY+ ++P S + EL +  + +   V R+S+++  +   ++LS +  +L ++ 
Sbjct: 237 RLIEGQFPNYRQLLPDSYEHELTITGSEVTDVVRRISLLA-QKNAPLRLSFAPGELTVSA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             PD+G+A ES+ V +   P +I FN  +L + +     + V   +V+ +L S      I
Sbjct: 296 QTPDIGEARESLPVAFQGEPFEIGFNPDFLRDGL-----ESVGSGDVMLKLISPLRPGLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +              Y++MP+R+
Sbjct: 351 QSAED---------GGFLYLIMPIRL 367


>gi|118615921|ref|YP_904253.1| DNA polymerase III subunit beta [Mycobacterium ulcerans Agy99]
 gi|118568031|gb|ABL02782.1| DNA polymerase III (beta chain) DnaN [Mycobacterium ulcerans Agy99]
          Length = 402

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 168/401 (41%), Gaps = 31/401 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  +      + +    + +  +  +PV   VLL  +D  L I     E+     +PA +
Sbjct: 14  KFRLVPESFADAVSWVAKNLPTRPAVPVLSGVLLTGSDEGLTISGFDYEVSAEVRVPAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G++ VS  LL DI R L       +      G  V ++ G++ F L +    ++P+ 
Sbjct: 74  ASPGTVLVSGRLLSDITRALPKKPVDFYVD----GNRVALTCGNARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +       ++    L GI   I+ E  K+   ATD  RL
Sbjct: 130 PTLPED-TGTLPAELFSEAIGQVAITAGRDDTLPMLTGIRVEISGE--KVVLAATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIE 233
           AV E+   A    +  +++VP K +GE  +  +   S V++SL        +  + ++ +
Sbjct: 187 AVRELTWNALSPDIEAAVLVPAKTLGEAAKANTDG-SEVRLSLGAGMGVGKDGLLGISGD 245

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP ++ ++P  +      +   L +A+  V++++  R   V++  +  
Sbjct: 246 GKRSTTRLLDAEFPKFRQLLPAEHTAVASADVAELTEAIKLVALVA-DRGAQVRMEFADG 304

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E + V +   P+ I FN  YL++ + ++ S     + V F   + 
Sbjct: 305 MLRLSAGADDVGRAEEDIAVEFAGQPLTIAFNPTYLIDGLASLHS-----ERVSFGFTTP 359

Query: 354 NSSVFIRGK---------DKDSKNNKDNKVNAFYVLMPMRI 385
                +R             D         +  Y+LMP+R+
Sbjct: 360 GKPALLRPASAEDRIVSGPGDQGPFAAVPTDYVYLLMPVRL 400


>gi|308066840|ref|YP_003868445.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681]
 gi|305856119|gb|ADM67907.1| DNA polymerase III, beta chain [Paenibacillus polymyxa E681]
          Length = 380

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 190/396 (47%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKI++ ++ + E + H  + I  + TIP+   + L  N   + + AS  +I I   IP  
Sbjct: 1   MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GS+ + A    +I++KL         K+     +  IS G +   +  
Sbjct: 61  DGDQTVVQIEQPGSVVLPAKFFVEIIKKLPSQEIHMEVKD---QFQTFISSGATEIQIVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E      +   +LKN++++T F+++T E    L G+ +++ E +LK  
Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +      +  ++++  K + E+ RI+  ++  V + ++++++   
Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           ++ +    R++DG +P+   +IP S   EL V+  +L +++DR  ++S   +   VK+ S
Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L +  L ++  + ++GK  E + V  +   P+ I FN KY+L+++  I S     +++  
Sbjct: 296 LENGGLEISSSSSELGKVREEVTVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D           NA Y+++P R
Sbjct: 351 AFTGIMSPIILKPAD---------SSNALYIILPYR 377


>gi|160932423|ref|ZP_02079813.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753]
 gi|156868382|gb|EDO61754.1| hypothetical protein CLOLEP_01258 [Clostridium leptum DSM 753]
          Length = 440

 Score =  309 bits (791), Expect = 6e-82,   Method: Composition-based stats.
 Identities = 110/389 (28%), Positives = 193/389 (49%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MKI  ++S ++E + +  R +  K+T+     +LL+   +G L++     E+ IT  I A
Sbjct: 68  MKIQCQKSQLVEAVSNVQRAVSSKSTLAALEGILLKTTTNGDLKLCGYDLELGITTVIEA 127

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G + +SA L  DIVR+L D        E        I+ G S F +   P SE+P
Sbjct: 128 QVDEPGEVVLSARLFGDIVRRLPDETVTILVDE---KMITQITCGPSEFSIVGIPSSEYP 184

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S +L S +LK+++ +T FA+A  + +    G  F+I    ++L  V+ DG+
Sbjct: 185 ELPSVEGASSIDLTSPILKSMIRQTLFAVADTDAKPVHTGTLFNIENGIIRL--VSVDGY 242

Query: 180 RLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLA+    +++  +       +VP K + E++++L  +D +V++ +    I   IE  S+
Sbjct: 243 RLAMRTEMINLKFEEEDEIRFVVPGKTLSEVIKLLPDQDENVEILVGRRHIIFKIEKYSV 302

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLC 296
             RL++GEF +Y+  IP     E+ VN  NL  +V+RVS++ + R++  V+   S D   
Sbjct: 303 ISRLLEGEFLDYKAAIPAQFTTEVTVNTRNLINSVERVSLLITDRLKSPVRCIFSEDGEI 362

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
                  +GKA + ++       ++I FN +YLL+ + N  +     DEV  +L    S 
Sbjct: 363 KISCVTSIGKANDELSAQITGPEVEIGFNNRYLLDALRNADT-----DEVKVQLTGPVSP 417

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I     DS           ++++P+R+
Sbjct: 418 MKIVPTQGDS---------FLFLVLPVRL 437


>gi|112789950|gb|ABI21619.1| Smu19B [uncultured organism]
          Length = 357

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 85/367 (23%), Positives = 160/367 (43%), Gaps = 15/367 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D+ + +    + +  +  +PV   +LL+ + G L +     E+     +   
Sbjct: 1   MKFRVARDDLADAVAWVAKSLPSRPPVPVLGGILLEVDGGTLTVSGFDYEVSTRAELSVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G + VS  LL +I R L              G+ V+I  G + F L + P  ++P 
Sbjct: 61  AEDDGRVLVSGRLLSEITRALPAKPVDFAVD----GSRVSIVGGSARFTLPTMPVDDYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E         ++++    V ++  A   ++    L GI   I  +  KL   ATD  R
Sbjct: 117 LPEMPAGSGTVESAAL-AEAVAQSVVAAGRDDTLPMLTGIRVEIEGD--KLTLAATDRFR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV E+        M  +++VP + + +  + L    +SV V+L +  + L       +V
Sbjct: 174 LAVRELGWTPDTPDMSTAVLVPARTLSDAAKTLGGA-ASVIVALGDGLLGLQAGGRRTTV 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL+D EF  Y++++P  +   + V  + L +A+ RV++++  R   +++ ++   L +T 
Sbjct: 233 RLLDVEFVKYRSLLPSEHTTTVDVPVSELVEAIRRVALVT-DRGHHLRMQVTDGLLTLTA 291

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
              D GKA E + V  +   + I FN  YL++ +  + S     + V     + +    +
Sbjct: 292 GGDDEGKAEEELPVEADGAELLIAFNPGYLIDGLGVLHS-----ERVRMAFTTPSRPALL 346

Query: 360 RGKDKDS 366
              D D 
Sbjct: 347 LPMDSDG 353


>gi|146300470|ref|YP_001195061.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101]
 gi|14531036|gb|AAK63183.1| DNA polymerase III beta subunit DnaN [Flavobacterium johnsoniae
           UW101]
 gi|146154888|gb|ABQ05742.1| DNA polymerase III, beta subunit [Flavobacterium johnsoniae UW101]
          Length = 372

 Score =  309 bits (791), Expect = 7e-82,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 183/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSSYLLKQLQVLGSVINSNNTLPILDNFLFELDNNELTVSASDLETTMSATLSID 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A LL +I++   +       ++N     V IS     + L      EFP 
Sbjct: 61  STSKGSVAVPAKLLLEILKTFPEQPLTFTVEDN---NTVEISSNSGKYALAYAAGEEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +   E      + + VL   V +T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 SVNLEDPSVTLVPADVLATAVSKTIFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V       + +++   I+P+K +  +  IL S D+ VK+  ++S    + ++  +  R
Sbjct: 176 L-VKYARADVKASQVADFIMPKKPLNILKSILGSSDAEVKIEYNDSNATFSFDNYILMCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++ +    +V RV+I S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLLIDRSLFLSSVRRVAIFSNKTTHQIRLKIAGAELNVSAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    + I FN ++L+E++ N+ SD ++       +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDLQIGFNSRFLIEMLTNLQSDVIM-----LEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       +       ++MP+ +
Sbjct: 350 TPAD-----GLEEGETVTMLVMPVML 370


>gi|22299892|ref|NP_683139.1| DNA polymerase III subunit beta [Thermosynechococcus elongatus
           BP-1]
 gi|22296077|dbj|BAC09901.1| DNA polymerase III beta subunit [Thermosynechococcus elongatus
           BP-1]
          Length = 370

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 194/388 (50%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S +   L    R+     + P+  ++LLQA  G L +      + +   + A+
Sbjct: 1   MKVVCSQSVLSSKLAPLSRVAPSNPSHPILANILLQAEGGRLGLSVFDLSLGMQIWLDAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G+ITVSA L  ++V ++ +   I    E+   T V + +G   F +Q     EFP+
Sbjct: 61  VKVPGAITVSAKLFSEMVSRMPN-RDIEITAED---TRVILDYGSGFFEIQGMSAEEFPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E V    L +  L+  ++ + FA +T+E +  L+G   H+  E  +L   ATDGHR
Sbjct: 117 LPTLEDVTPITLTAEALRRGLQGSLFAASTDENKQILSG--LHVTFERDRLEFAATDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-LSMSV 239
           LAV   +       +  I +P K++ ++ R+++ +D  V +    +++  +I +   ++ 
Sbjct: 175 LAVTVTEQPVPAEPLSPITIPAKSLKDLERLMAKQDGMVALRCDPTQVVFDIGNDARITS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297
           RL++G++PNY+ +IP +  +++ V  + L  A++RV+I+++ +   VK+++   + +L +
Sbjct: 235 RLLEGQYPNYRQLIPKTFARQVTVERSALADALERVAILAAQKNNVVKINIDTEAQELKL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           + + P +G   E++    +   M + FN KYLLE +  ++S +     V  +L+      
Sbjct: 295 SAEAPQLGSGEENLPAQISGESMVVAFNVKYLLEGLKVMNSAD-----VQLQLNGETQPA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +             +    Y++MP++I
Sbjct: 350 ILLP---------LGEAQMKYLVMPIQI 368


>gi|289642467|ref|ZP_06474612.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca
           glomerata]
 gi|289507726|gb|EFD28680.1| DNA polymerase III, beta subunit [Frankia symbiont of Datisca
           glomerata]
          Length = 385

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 166/395 (42%), Gaps = 22/395 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER D  + +    R +  + T  + V   ++L A    L + A   E+     + 
Sbjct: 1   MKFRVERDDFTDAVAWTARTLPTRATSQLQVLAGLMLDATGPSLSVAAFDYEVAAQSGVD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+++  G   VS  LL +I R L       +      G  V ++ G++ F L +    ++
Sbjct: 61  ATIEQEGRALVSGKLLAEITRALPSAPVDLYTD----GARVVLTCGNARFTLPTMSVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+        +  +  +     V +   A   ++    L G+   I+ + L L   ATD 
Sbjct: 117 PALPPMP-AVTGHIEGAAFAGAVSQVAVAAGKDDTLPVLTGVRVEIDGDVLTL--AATDR 173

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV ++           + +VP + + E  + LS     V +SL      E+      
Sbjct: 174 YRLAVRKLRWRPASETADGVAMVPARTLSETAKSLSGSGVEVAISLGSGPSGEALAGFAG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                + RL+DG FP YQ ++P S+    +V      +AV RV+++++ R   V+LS S 
Sbjct: 234 GGRQTTTRLVDGSFPPYQRLLPDSSPLTAQVEIAPFAEAVKRVALVAA-RTAPVQLSFSD 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D+L +        +A E++ + Y+   + I FN  YLL+ +  + SD V           
Sbjct: 293 DQLVLEAGAGGEAQAQETLTIGYDGPSLSIAFNPSYLLDGLGALESDVVHVGFASADDPD 352

Query: 353 --SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S     + GK  D     D      Y+LMP+R+
Sbjct: 353 EASKKPAILTGKAPDDGEVPD----YRYLLMPIRL 383


>gi|108802858|ref|YP_642795.1| DNA polymerase III subunit beta [Rubrobacter xylanophilus DSM 9941]
 gi|108764101|gb|ABG02983.1| DNA polymerase III, beta subunit [Rubrobacter xylanophilus DSM
           9941]
          Length = 375

 Score =  308 bits (790), Expect = 8e-82,   Method: Composition-based stats.
 Identities = 101/387 (26%), Positives = 188/387 (48%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+       +   L    R +  ++ + V   VLL+A +G LE+ A+  E+ I    PA 
Sbjct: 1   MRAVCNTGVLAGKLALVSRGVSTRSPVQVLSGVLLEAREGRLELSATDMELSIRTRSPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + A +  DIVR L +G  IS   + E G  V +   ++ + ++++   +FP+
Sbjct: 61  VEEAGRLVIPARIFSDIVRSLPEG-MISIEHDVESGAAV-LRSRENEYRIRAYAAEDFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF ++   L   V++   + + +E R  L GI   I+ ED +L  V TD +R
Sbjct: 119 LPEFSEEGSFRVSGEALVETVQKVSSSYSRDETRPVLTGIL--ISFEDSRLRMVTTDSYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMSV 239
           L++ E ++          I+P +A+ E+ RI S  D   ++V LSE++    +  + +  
Sbjct: 177 LSIKETELATTFEGKREAIIPARAMQEVGRIFSGSDEEQIEVQLSENQALFRVGDVLLGT 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ--AVKLSLSSDKLCM 297
           +LI G FP Y+ ++P + ++E+ VN   +  ++ RV++ +  +     V L  S   + +
Sbjct: 237 KLIAGNFPEYRRLLPAAFEREISVNRDEIVGSLRRVNLFAQRQTPPVPVSLVFSEGSVEV 296

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            V + ++G+A E +    +E    I FN  YLL+ I  + +     ++VVF+ +      
Sbjct: 297 VVRSGEVGEAHERIPAS-SEDDFTISFNPGYLLDGISAVDT-----EKVVFKFNEPLKPG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I         N + + +  Y++MPMR
Sbjct: 351 LIVP-------NGEEEPDFRYLIMPMR 370


>gi|260887487|ref|ZP_05898750.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|330837869|ref|YP_004412449.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|260862774|gb|EEX77274.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
 gi|329745633|gb|AEB98989.1| DNA polymerase III, beta subunit [Selenomonas sputigena ATCC 35185]
          Length = 370

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 107/386 (27%), Positives = 204/386 (52%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  ++++ + +    + I  K   P+   + ++A +  +E+ A+  E+ I   IP+ 
Sbjct: 1   MKFTCHKNELAQAIQLVSKAIANKPQTPILSGIYMEATNNQVELHATDNEMGIISIIPSE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + +S   + +++R+L         + +E  ++  I    SNF L S P ++FP+
Sbjct: 61  VEQEGKLVLSGRYMQEVIRRLPGETVTISQEIDENISK--IQSAASNFTLLSMPANDFPT 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K  E    F++  +VL++++++T FA +T+E R    G    IN E LK+   AT+ HR
Sbjct: 119 VKRLEDGIRFKIQDNVLRDIIKKTVFACSTDEARPVFTGCQMEINGETLKM--AATNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           L+V + +++A ++    II+P K + E+LR L+S     V V  S ++     E++ +  
Sbjct: 177 LSVKK-EVIANLSGDLHIIIPAKILNELLRALNSDMPVEVDVCCSSNQASFQFENVVLMS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
           RLI+G+FPNY +VIP +    + ++  +   AVDRVS++S S     ++L    +++ ++
Sbjct: 236 RLIEGQFPNYDSVIPKNFATTVTLDTEDFLAAVDRVSLISRSADYNIIRLEFGGNQVHIS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD+GKA E +    +   ++I FN KY+ +++ NI S         F L+ S  +  
Sbjct: 296 SNSPDIGKADEIVAASIDGPAVNIAFNAKYVTDVLKNIDSKNF-----RFLLNQSLQAAA 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +R +D  +           Y++ P+R
Sbjct: 351 VREEDNPT---------FVYIVTPVR 367


>gi|20806544|ref|NP_621715.1| DNA polymerase III subunit beta [Thermoanaerobacter tengcongensis
           MB4]
 gi|20514981|gb|AAM23319.1| DNA polymerase III beta subunit [Thermoanaerobacter tengcongensis
           MB4]
          Length = 370

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 191/389 (49%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ +LE +  A R +  + T+P+   + + A   ++++  +  EI I   IPA 
Sbjct: 1   MKFVCDKNSLLEGVNIAIRGVSSRTTLPILQGIKITARGNVIKLSGTDLEIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V A +  D+V+KL +G       +++    VN+  GD NF +      EFP 
Sbjct: 61  IEEEGETVVPARIFSDLVKKLPEGEV---EVKSDSQNTVNVVSGDINFSIAGSNPEEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     SF+L  S+LK+L+++T F ++ E+ R  L G+ F +   +LK  AVA DG R
Sbjct: 118 IPEVSREKSFKLPQSILKDLIKKTVFCVSEEQTRPILTGVLFEVFPNELK--AVALDGFR 175

Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           + A+  S+++P   + EI RIL  +++ V +  + +++   I++  
Sbjct: 176 MAIYSYKSEKSFFDEEAEKYSLVIPGDTIDEISRILEDEETEVIIYHTSNQVLFQIDNTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ +N     ++++R S+++  +   VK  +    + 
Sbjct: 236 VISRLLEGSFINYNAVLPKDFKTEITINKDVFMESLERASLIAESKNNLVKFEIGDSFIV 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  +       E + V      ++I FN +YLL+ +  I+     ++EV     +S + 
Sbjct: 296 ISSSSEKG-SMSEKLEVEVKGMLLEIAFNSRYLLDALKAIN-----EEEVNLYFINSINP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+            +    Y+++P+++
Sbjct: 350 LIIKPV---------GEKEYLYMILPVKL 369


>gi|297200941|ref|ZP_06918338.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
 gi|197716888|gb|EDY60922.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
          Length = 376

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 167/390 (42%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +   PV   +LL+A +G L + +   E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGQLSLSSFDYEVSARVSVEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G    +  G S F L + P  E+P+
Sbjct: 61  VEEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVVCGSSRFTLHTLPVEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  +   V  +   +   A   ++    L G+   I  + + L   +TD +R
Sbjct: 117 LPQMP-SATGTVPGEVFASAAAQVAIAAGRDDTLPVLTGVRIEIEGDTVTL--ASTDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESL 235
            AV E     +  +  ++ +VP K + +  + L+S DS +         E  I       
Sbjct: 174 FAVREFLWKPENPEASAVALVPAKTLLDTAKALTSGDSVILALSGSGAGEGLIGFEGAGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL++G+ P Y+++ P   +    +      +AV RV++++  R   V+LS     L
Sbjct: 234 RTTTRLLEGDLPKYRSLFPTEFNSVAVIETAPFVEAVKRVALVA-ERNTPVRLSFEQGVL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + D  +A+E ++ +     + I FN  +LL+ +  I S             +S  
Sbjct: 293 ILEAGSSDDAQAVERVDAHLEGDDVSIAFNPTFLLDGLSAIDSPV-----AQLSFTTSTK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + GK      + +      Y++MP+R+
Sbjct: 348 PALLSGK---PALDAEADEAYKYLIMPVRL 374


>gi|94967033|ref|YP_589081.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis
           Ellin345]
 gi|94549083|gb|ABF39007.1| DNA polymerase III, beta subunit [Candidatus Koribacter versatilis
           Ellin345]
          Length = 371

 Score =  308 bits (790), Expect = 9e-82,   Method: Composition-based stats.
 Identities = 118/387 (30%), Positives = 193/387 (49%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV + D+L+ L     ++ERK TIP+  + L +A    L I A+  ++ +  A    
Sbjct: 1   MEITVSKFDLLKELTATQGVVERKTTIPILSNFLFEAVGDKLNITATDLDLSLRTACVTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T+ A  LYD V+ L DG       EN     VNI  G SN  +     S FPS
Sbjct: 61  VKKEGSCTIPARKLYDYVKLLPDGDITIKLLENH---WVNIRSGRSNTKMVGMARSNFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     ++ ++ L+ ++ +T FA++ EE RY LNG    +  E   L  V+TDGHR
Sbjct: 118 LPVFPTTGMVKIPAAALRTMIGKTIFAISNEESRYTLNGALMVLKPES--LIMVSTDGHR 175

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMS 238
           LA  E      +I+     +VP+KA+ E+  +L S +   ++ +  ES +   I    ++
Sbjct: 176 LAHIERQGGKFEISGEMKTLVPKKAMSELYSLLQSTETEDIEFAKDESTLFFRIGGRLLT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R + G+FPNY+ V+P  NDK + +       A+ RV+  +  R QA+K+ L  D+L ++
Sbjct: 236 SRQLTGQFPNYEAVLPKDNDKSVTIRTDEFMAAILRVAQFADERSQAIKVRLEKDELRIS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + + G++ +S+   Y    + I FN +YL+E +    +     DEV     ++ S+  
Sbjct: 296 SSSTETGESEDSIVTAYTGEVVTIGFNSQYLIEFLKAAGA-----DEVRLEFKNAQSAGQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R +         ++    YV+MPMRI
Sbjct: 351 LRPE------ATSDEFKYRYVVMPMRI 371


>gi|300853234|ref|YP_003778218.1| DNA polymerase III subunit beta [Clostridium ljungdahlii DSM 13528]
 gi|300433349|gb|ADK13116.1| DNA polymerase III, beta chain [Clostridium ljungdahlii DSM 13528]
          Length = 367

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M     ++++ E +  A + I  K+++P+   +L+      +++  S  ++ I   I A 
Sbjct: 1   MNFICTKTELQEAISIAQKAITGKSSMPILNGLLITTCKNQIKLTGSDIDLSIETKINAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ V + L  +I+RKL +        EN     + I    S F L      +FP 
Sbjct: 61  IKEEGSVVVDSRLFGEIIRKLPNDNINISTTEN---NSIEIICQKSKFNLIHMNAEDFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +   +LK++++ T FA A +E R  L GI F I ++  KL  VA DG+R
Sbjct: 118 IPNINENIIFLIPQKILKDMIKSTIFAAAQDETRPILTGILFEIKDK--KLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +  +   + + ++P K + E+ +IL   D +V ++ + + I  N+++  +  R
Sbjct: 176 LALKSEYLNTE--NIINAVIPEKTLSEVSKILEDNDKNVNITFTPNHILFNLDNTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP   + ++      L   ++R S+M+       +KL +  + + +T 
Sbjct: 234 LLEGEFIKYNSIIPDEFNLQVTAKREELLSCIERASLMAKDSNTNLIKLEIEENNMIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E +N+      + I FN KYL++++  +      ++E++ +  SS S   I
Sbjct: 294 -NSQLGMVREELNILLQGDTLKIAFNSKYLIDVLKIMD-----EEEIIMKFSSSVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + KDKD         N  Y+++P+R+
Sbjct: 348 KNKDKD---------NCTYLVLPVRL 364


>gi|329312725|gb|AEB87138.1| DNA polymerase III subunit beta [Staphylococcus aureus subsp.
           aureus T0131]
          Length = 377

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 185/394 (46%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  L    + I  + T+P+   + + A +  + +  S  EI I   IP  
Sbjct: 2   MEFTIKRDYFITQLNDTLKAISPRTTLPILTSIKIDAKEHEVILTGSDSEISIEITIPKT 61

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GS+ +      DI++KL          E     +  I+ G S F L  
Sbjct: 62  VDGEDIVNISETGSVVLPGRFFVDIIKKLPGKDVKLSTNE---QFQTLITSGHSEFNLSG 118

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     + +L+  VLKN++ +T+FA++T E R  L G+ + I E +  L 
Sbjct: 119 LDPDQYPLLPQVSRDDAIQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENE--LI 176

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLAV ++ +   +++  ++I+P KA+ E+ +I+S  +  + +  + +++   +
Sbjct: 177 CTATDSHRLAVRKLQLE-DVSENKNVIIPGKALAELNKIMSDNEEDIDIFFASNQVLFKV 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +++   RL++G +P+   + P + + +L ++      A+DR S+++       +KLS  
Sbjct: 236 GNVNFISRLLEGHYPDTTRLFPENYEIKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTG 295

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D + ++  +P++G   E ++        + I FN KY+++ +  I      +DEV    
Sbjct: 296 DDVVELSSTSPEIGTVKEEVDANDVEGGSLKISFNSKYMMDALKAID-----NDEVEVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++ K  DS            +++P+R
Sbjct: 351 FGTMKPFILKPKGDDSVTQ---------LILPIR 375


>gi|227533505|ref|ZP_03963554.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
 gi|227188834|gb|EEI68901.1| DNA-directed DNA polymerase [Lactobacillus paracasei subsp.
           paracasei ATCC 25302]
          Length = 434

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 174/395 (44%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A 
Sbjct: 56  MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 115

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F +   
Sbjct: 116 DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 172

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  +++ VL+ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 173 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 230

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   + +    A    II+P K++ E+ R+LS     +++ ++E+++     
Sbjct: 231 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 290

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++S      V    L++
Sbjct: 291 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 350

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +  K  +  ++PD+G   E ++    +   ++I FN  Y+ + +       +  D     
Sbjct: 351 ADQKATIYGNSPDVGNVEEVLSFNKLSGEDLEISFNPDYMKDALQGFGQTAIEVD----- 405

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +      +   +         K     ++ P+R
Sbjct: 406 FTAPLRPFTLVPTED--------KERFIQLITPVR 432


>gi|54025936|ref|YP_120178.1| DNA polymerase III subunit beta [Nocardia farcinica IFM 10152]
 gi|54017444|dbj|BAD58814.1| putative DNA polymerase III beta subunit [Nocardia farcinica IFM
           10152]
          Length = 381

 Score =  308 bits (789), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 94/390 (24%), Positives = 165/390 (42%), Gaps = 20/390 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +  V R D+ +      R +  +  +PV     L+A+D  L I     E+     I A V
Sbjct: 4   RFRVARGDLADAATWVARSLPSRPPVPVLGGAHLRADDDGLTISVFDYEVSAQMRIAAEV 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + VS  LL DI + L +      F     G+ V I+ G + F L + P  ++P  
Sbjct: 64  AHDGEVLVSGKLLADITKALPNKPVDITFD----GSRVLIACGSAKFSLPTMPVEDYPKL 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     S ELA+ +    V +   A   ++    L GI   I+  ++ L   ATD +RL
Sbjct: 120 PDVP-ARSGELAADLFATAVSQVAVAAGRDDTLPMLTGIRVEIDGAEVTL--AATDRYRL 176

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           AV  ++           ++VP + + E ++ L S  +  ++++ +S   L       + R
Sbjct: 177 AVRTLEWSPTDPSVETQVLVPARTLAEAVKALESA-APARLAIDDSMFGLVNARRRTTTR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+D EFP ++ ++P  +     V   +L  A+ RV++++  R   V+L  S D L ++  
Sbjct: 236 LLDAEFPKFRQLLPKEHTSVATVFVPDLVDAIKRVALVA-ERGAQVRLEFSEDGLLLSAG 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D G+A E++   +   P+ I FN  YL++ +  + S       V     +      + 
Sbjct: 295 GDDAGRAEEAVPAEFRGEPLTIAFNPGYLMDGLTALHSTS-----VTLGFTTPTRPAVLV 349

Query: 361 GKDKDSKNNKDNKVNAF-----YVLMPMRI 385
                          A      Y+LMP+RI
Sbjct: 350 PSGDVEVKESSGGFAALSGPFVYMLMPVRI 379


>gi|310639473|ref|YP_003944231.1| DNA polymerase iii, beta subunit [Paenibacillus polymyxa SC2]
 gi|309244423|gb|ADO53990.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa SC2]
          Length = 380

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 191/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKI++ ++ + E + H  + I  + TIP+   + L  N   + + AS  +I I   IP  
Sbjct: 1   MKISILKNVLNEAIQHVSKAISSRTTIPILSGIKLDVNHQGVTLTASDTDISIQSFIPME 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GS+ + A    +I++KL         K+     +  IS G +   +  
Sbjct: 61  DGDQTVVQIEQPGSVVLPAKFFVEIIKKLPSQEIRMEVKD---QFQTFISSGATEIQIVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E      +   +LKN++++T F+++T E    L G+ +++ E +LK  
Sbjct: 118 LDPEEFPVLPNIEENQVISVPGDLLKNMIKQTVFSISTHETTPILTGVLWNLAEGELKF- 176

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +      +  ++++  K + E+ RI+  ++  V + ++++++   
Sbjct: 177 -VATDRHRLATRSAHLETSEGLRFSNVVIAGKTLNELSRIIPDQNMLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           ++ +    R++DG +P+   +IP S   EL V+  +L +++DR  ++S   +   VK+ S
Sbjct: 236 VDRVLFYSRILDGTYPDTSRIIPTSYKTELIVDTKSLSESIDRAYLLSREEKTNIVKMQS 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L +  L ++  + ++GK  E +NV  +   P+ I FN KY+L+++  I S     +++  
Sbjct: 296 LENGDLEISSSSSELGKVREEVNVSKFEGEPLKISFNSKYMLDVLKVIDS-----EQLTI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D           NA Y+++P R
Sbjct: 351 AFTGIMSPIILKPAD---------SSNALYIILPYR 377


>gi|81251069|gb|ABB69873.1| DNA polymerase III beta chain [Nitrosospira sp. GS832]
          Length = 369

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 122/390 (31%), Positives = 206/390 (52%), Gaps = 26/390 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT ++  
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSVE- 59

Query: 60  SVDVCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            V+  G   S+TV A  L DI+R L D  Q++          ++   G S F LQ+ P  
Sbjct: 60  DVNPAGEEHSVTVPAKKLQDILRALPDKVQVTLET---GENRLHAKAGKSRFNLQTLPVE 116

Query: 117 EFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +FP   E  E      +    LK+++    +AMA ++IRYYLNG+   + +  LK+  VA
Sbjct: 117 DFPKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLMEDNYLKV--VA 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA A + + A   K   +I+PRK V E+ R+L+  D  V V   ++++     ++
Sbjct: 175 TDGHRLAFALMLLAAPQEKKE-VILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNV 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +++DG+FP+Y  VIP   +K+  +N   L Q + R SI+S+ + + V+L L+S  L
Sbjct: 234 ILVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNL 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +  +N +  +A E + + Y    +DI FN  YLL+++++++      + V      +NS
Sbjct: 294 RIVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNC-----ETVRCAFGDANS 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  I     D         +  YV+MPMRI
Sbjct: 349 SALISIPGND---------DFKYVVMPMRI 369


>gi|312869207|ref|ZP_07729379.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3]
 gi|311095228|gb|EFQ53500.1| DNA polymerase III, beta subunit [Lactobacillus oris PB013-T2-3]
          Length = 380

 Score =  307 bits (788), Expect = 1e-81,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 178/396 (44%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T+ R+  +  L +  R I  K TIP+   + +  +   + +  S  +I I   I AS
Sbjct: 1   MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   G+I + A    +IV+KL D        E   G + +I+ G + F +   
Sbjct: 61  DEDYGLTVKEAGAIVLPARFFSEIVKKLPDKQV---TIEVTNGFQADITSGTAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             S FP   E E   +  L + VLK ++ +T  A++ +E R  L G+ F +   D  L A
Sbjct: 118 DASNFPHLPEIESDNTITLPTDVLKEVIRQTVIAVSKQESRPILAGVHFTLK--DGLLTA 175

Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRLA  +V +     +    II+P K++ E+  ++   +  VKV +SE+++    
Sbjct: 176 VATDSHRLAQRKVALENVDSSINFDIIIPGKSLDELSGMMGDGNEDVKVQVSENQVLFIF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290
            +     RL++G +P    +IP ++D  + V       ++DR S++S   R   VKL++ 
Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLTIQ 295

Query: 291 -SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            ++ ++ ++ D+PD+G   E +         ++I FN  Y+ + + +          +  
Sbjct: 296 PANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYMKDALRSFGQST-----IRI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              S+     +   +           N  +++ P+R
Sbjct: 351 SFTSALRPFTLVPTED--------TENFVHLITPVR 378


>gi|227514120|ref|ZP_03944169.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
 gi|227087491|gb|EEI22803.1| DNA-directed DNA polymerase [Lactobacillus fermentum ATCC 14931]
          Length = 379

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/395 (20%), Positives = 180/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK T+ R+  +  L +  R +  K+TIP+   + L  ++  + +  S  +I I   +   
Sbjct: 1   MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +V+  G+I + A    DIV+KL D        +   G +  I  G + F +   
Sbjct: 61  DGQYQLTVEEPGAIVLPARFFSDIVKKLPDQQVTIAVTD---GFQAQIMSGTAEFVINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   SFE+A+ +  +++ +T  A++ +E R  L GI  H++  D  L A
Sbjct: 118 DANNYPHLPEIETAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +     +   +++P  ++ E+ R++      VK+ +++++      
Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           +     RL++G +P+   +IP +++  + ++ +    A++R S++S   R   VKL++  
Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                 ++ ++ D+G   E++         ++I FN  ++ + + +    +     ++  
Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAK-----IILS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++     +   +   +           ++ P+R
Sbjct: 351 FTTALRPFTLVPTEDSDQ--------FVQLITPVR 377


>gi|320109372|ref|YP_004184962.1| DNA polymerase III subunit beta [Terriglobus saanensis SP1PR4]
 gi|319927893|gb|ADV84968.1| DNA polymerase III, beta subunit [Terriglobus saanensis SP1PR4]
          Length = 397

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 114/392 (29%), Positives = 200/392 (51%), Gaps = 23/392 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +ITV RS++L  L  A  ++ERK TIP+  + L +A++  L I A+  +  +  +  A V
Sbjct: 21  EITVSRSELLRELTAAQSVVERKTTIPILSNFLFEADEDRLTITATDLDQSLRTSCAAKV 80

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G+ T+ A  LYD ++ L DG       +N     V I  G SN  +     + FP  
Sbjct: 81  KKPGACTIPARKLYDYIKLLPDGEISIKLMDNH---WVQIRAGRSNTKMVGMARANFPQV 137

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E     S ++A   L++++ +T F++++EE RY LNG    +  E   +  VATDGHRL
Sbjct: 138 AEFPTTGSIKIAVPALRSMIAKTIFSISSEESRYTLNGALLVLKAES--MAMVATDGHRL 195

Query: 182 AV--AEVDIVAQIAKMPSIIVPRKAVGEILRIL------SSKDSSVKVSLSESRIHLNIE 233
           A      + +A ++     ++PRKA+GE+  +L      + ++  V+ +  ++ +   I 
Sbjct: 196 AHIERLGENLAGVSGEKKTLIPRKALGELSSLLANSNAATEEEDYVEFADDDTTLFFRIG 255

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              ++ R + G+FPNY+ V+P  N+K + V   +L  A+ RV+  +  R  AVK+ L  +
Sbjct: 256 GRVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMGALQRVAQFADERSGAVKIRLEQN 315

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L ++  + D G++ + +   YN  P+ + FN +YL++ +  I +      EV      +
Sbjct: 316 ELRISSSSTDSGESEDIIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKDA 371

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S+  +R +D       +      Y+LMPMRI
Sbjct: 372 QSAGQMRPED------SNEDQKYRYILMPMRI 397


>gi|295133681|ref|YP_003584357.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87]
 gi|294981696|gb|ADF52161.1| DNA polymerase III subunit beta [Zunongwangia profunda SM-A87]
          Length = 372

 Score =  307 bits (788), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L   N+  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSSYLLKQLQILGGVINNNNTLPILDNFLFDLNNDELTVSASDLETTMSAKLNVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V A LL D ++   +       ++N     + +S     + L      EFP+
Sbjct: 61  SDSEGKIAVPAKLLLDTLKTFPEQPLTFVAEDNHT---IELSSNHGKYALAYADGEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  +   +L + + +T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 PVSLEDPSNTVIEGDILSSAISKTIFASGNDDLRPVMSGVFFQFSTEGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     +     ++    I+P+K +  +  IL+  +S V +  +ES      +  ++  R
Sbjct: 176 LVKYSRE-DVTASQTAEFIMPKKPLNLLKGILAGSESEVLIEYNESNAKFTFDDTTLICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +       +V RVSI S+     V+L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N++S     DEV   +   N +  +
Sbjct: 295 DVDYSNKAEERLTCGYQGDDMQIGFNSRFLTEMLNNLNS-----DEVQLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPVD-----GLDPGEKITMLVMPVML 370


>gi|284028001|ref|YP_003377932.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836]
 gi|283807294|gb|ADB29133.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836]
          Length = 381

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 172/395 (43%), Gaps = 26/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +  A R +  + ++P+   +L++A +G + +     E  +   +PA 
Sbjct: 1   MKFRVERDVLAESVAWAARSLPSRPSVPILAGLLVEAEEGQITLSGFDYETSVRVTVPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   +S  L+ DI + L +            G +  ++ G S F LQ+ P  E+P+
Sbjct: 61  VADTGKCLISGRLVADISKSLPNQPVDIAVD----GAKAQVTCGSSRFTLQTLPTEEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  + S V    V +   A   E+    L G+   I    + L  +ATD +R
Sbjct: 117 LPDLP-AASGTVRSDVFAQAVSQVVTAAGREDTLPVLTGVRVEIEGSTISL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLN----I 232
           LA+ E++   Q      + ++P + + E  + ++  D  V ++     +  +        
Sbjct: 174 LAIRELEWNPQSPDASAAALIPARVLSETAKAMTGTDIIVSLAAPGSGDGIVGFEGEVSG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            +   + RL+DGEFP  + +IP  +     +R++   L +AV RV++++  R   V+L+ 
Sbjct: 234 GNRRATTRLLDGEFPKVRGIIPTDSAIATRVRLDTATLVEAVKRVALVA-ERNAPVRLTF 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S D + +   + D  +A ES+       P+ + FN  YLL+ ++ I +            
Sbjct: 293 SEDSVTLDAGSGDEAQASESIEARVVGEPVTVGFNPTYLLDGLNAIGTPV-----AHLAF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +     + G       + D      YVLMP+R+
Sbjct: 348 TQATKPAELTGVTD---FDGDPIAEFRYVLMPVRL 379


>gi|332968622|gb|EGK07676.1| DNA-directed DNA polymerase III beta subunit [Kingella kingae ATCC
           23330]
          Length = 367

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 108/384 (28%), Positives = 201/384 (52%), Gaps = 21/384 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  +R ++L+ +     I+ERK+T+P+  +VLL+++ G + + A+  EI+I      S  
Sbjct: 4   LETQRDNLLKPIQAVTGIVERKHTLPILANVLLESHAGKIRVLATDLEIQIHTQGAESEH 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               +T +A  L DI++ L D A +     +     + +  G S F LQ+ P  +FP+  
Sbjct: 64  GDFRLTTNAKKLQDILKALPDSANVQLDWADH---RLTLKSGKSRFNLQTLPAEDFPTMN 120

Query: 123 EEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             +   + F L    LK+++ +  ++MA ++IR+YLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGDTTTAAFALPQETLKHMISQVQYSMAVQDIRFYLNGLLLQVEGNQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           A A   I   + K   +I+PRK V E  ++L+    +  + L + ++ L      +  ++
Sbjct: 179 AFASTTIDTDLPKQ-DVILPRKTVLEWNKLLNQPKENAVIELLDKQVRLRCNDTVVVSKV 237

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           IDG+FP+Y  VIP  N++ + +N   L  A++R SI+++ + + V+L LS+  L ++  N
Sbjct: 238 IDGKFPDYNRVIPMDNNRIVVLNRLALLGALERSSILANEKFRGVRLQLSAGSLRVSCTN 297

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            +  +A+E + + Y    ++  FN  +LL+++  +S     D++V     ++  S     
Sbjct: 298 NEQEEAVEELELAYQGESLETSFNISFLLDMLRALS-----DEDVQIAFGTATQSTLFTL 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            ++          N  YV MPMR+
Sbjct: 353 PEQP---------NFKYVAMPMRL 367


>gi|320162114|ref|YP_004175339.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1]
 gi|319995968|dbj|BAJ64739.1| DNA polymerase III beta subunit [Anaerolinea thermophila UNI-1]
          Length = 378

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 99/391 (25%), Positives = 194/391 (49%), Gaps = 25/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV +  +   LG   R +  ++T+PV  +VLL  ++G L + A+  E+ I+  + A 
Sbjct: 6   MKVTVSQQHLAHGLGLVSRAVAPRSTLPVLGNVLLATDEGRLRLAATNLELGISCWLGAQ 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A L  D++  L +  ++     N     +++  G S+  L+    +EFP 
Sbjct: 66  IQEEGSITVPARLFADLIGTLPN--EMIHLAVNPRSMALSVKCGSSSTELKGIDAAEFPP 123

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +  +   L  +  K ++++  FA +TEE R  L G+   I+ +++ L   ATDG R
Sbjct: 124 VPAVDSDHGVLLPVADFKEMIQQVAFAASTEEARPVLQGVQMVISGDEISL--AATDGFR 181

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           ++V ++ +   +A+  S+I+P +A+ E+ RI    +  + V     ++   +E+L ++ +
Sbjct: 182 ISVRQMRLSEPVAQPISVIIPARALQELARIAQEGEVRLIVPPGRGQVVFQMENLQLTSQ 241

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-----SDKL 295
           LIDG FP+Y+ ++P S      V+   L +AV +  I++ +    V+L L        ++
Sbjct: 242 LIDGNFPDYKVILPRSYKTHTIVSTEALLKAVKQAEIIARMGNGVVRLHLQKFDDRPGQI 301

Query: 296 CMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            ++  + + G A ES+ +       + I FN K+L E ++ I +       +V + + + 
Sbjct: 302 EISAQSEETG-ANESLVDANIEGPTLAIAFNVKFLREALEVIKT-----PNLVLQTNDNR 355

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   ++    +S           +V+MPM +
Sbjct: 356 SPARLQPVGDES---------FQHVIMPMHL 377


>gi|227529861|ref|ZP_03959910.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
 gi|227350230|gb|EEJ40521.1| DNA-directed DNA polymerase [Lactobacillus vaginalis ATCC 49540]
          Length = 379

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 177/395 (44%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS  +  L +  R I  K TIP+   + +   +  + +  S  +I I   + AS
Sbjct: 1   MKFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVANDSITLTGSNSDITIESVMSAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A    +IV+KL D        E   G + +I+ G + F +   
Sbjct: 61  NEDYELKIAEPGSIVLPARFFSEIVKKLPDK---HVTIEITSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   +  LA+ +LK ++ +T  A++ +E R  L GI  H+   D  L A
Sbjct: 118 DAENFPHLPEVEANNTVVLANDMLKEVIRQTVIAVSKQESRPILAGI--HVTLHDGLLTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA  +V +         +I+P K++ E+  ++S  D  VK+ ++++++     
Sbjct: 176 VATDSHRLAQRKVQLDGVGDVNYDVIIPGKSLDELSGMISDVDDDVKMQVTDNQVLFIFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           +     RL++G +P    +IP ++D  + V+      ++DR S++S   R   VKL++  
Sbjct: 236 NTHFYSRLLEGNYPETSQLIPDTSDTTVEVDAGTFLSSIDRASLLSHESRNYVVKLTIKP 295

Query: 293 DK--LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +  + ++ D+PD+G   E +         ++I FN  Y+ + + +          V   
Sbjct: 296 GEKLVRISGDSPDIGMVEEDVATSAVEGNDLEISFNPNYMKDALRSFGQST-----VKIS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S      +   +           N  +++ P+R
Sbjct: 351 FTSPLRPFTLVPTED--------TENFVHLITPVR 377


>gi|125974857|ref|YP_001038767.1| DNA polymerase III subunit beta [Clostridium thermocellum ATCC
           27405]
 gi|125715082|gb|ABN53574.1| DNA polymerase III, beta subunit [Clostridium thermocellum ATCC
           27405]
          Length = 366

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  ++E +    + +  K T+ +   +LL+A D   ++  +  E+ I   I A 
Sbjct: 1   MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLIDAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ +  DIVR+L D   +   KEN     V I   +S+F L+  P   FPS
Sbjct: 60  ILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     +++   +++++ +T FA++TE  R  L G        ++    V+ DG R
Sbjct: 117 LPSIEKENMIKVSQKAIRDMIRQTLFAVSTEGTRPILTGSLIECAGNEITF--VSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ + +   +     S++VP K + EI +IL   D  + +  S+++I   I +  +  R
Sbjct: 175 MALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           L++GE+ NY+++IP   +  +R+   +L  +++R S++ S  +   VK ++  DK+ +T 
Sbjct: 234 LLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E + V  N   M++ FN +Y +E +  I      D+ V    +SS     I
Sbjct: 294 -NTEIGAVREEIRVEVNGSNMEVGFNPRYFIEALRVID-----DELVDIYFNSSVGPCTI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  + DS           Y+++P+RI
Sbjct: 348 RPLEGDS---------FAYMILPVRI 364


>gi|73667428|ref|YP_303444.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake]
 gi|72394569|gb|AAZ68846.1| DNA polymerase III, beta subunit [Ehrlichia canis str. Jake]
          Length = 375

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 119/386 (30%), Positives = 205/386 (53%), Gaps = 20/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
              V +  +L+ L +   ++E++++I V   V ++A D  + + ++  +I I  +I A +
Sbjct: 8   NFFVSKDKLLQALSYINSVVEKRHSIVVLSCVRIEAKDHQINLTSTDLDISIIASISAHI 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G + VSA LLYDIV+KL +  +I F    +    + I  G + F+L      +FP  
Sbjct: 68  NENGVVVVSAQLLYDIVKKLPNDIEIKFVIGKD--GRLVIECGRTEFFLPVVDIEKFPII 125

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +  E    F L  S L NL  +T FA++ EE R+ LNG++ H  +    LC  ATDGHRL
Sbjct: 126 ENNELQNKFTLQVSELVNLFGKTKFAISVEESRFNLNGVYVHTADN--ILCCAATDGHRL 183

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSV 239
           ++A++     +     IIVP+K V EIL+I+S  S +  + VSLS+ +I    +   +  
Sbjct: 184 SLAKLSKSQNMLSNFGIIVPKKTVNEILKIVSHGSNNDLISVSLSDRKICFEYQEYILIS 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG FP+Y  +IP S++K + +    L  A+DRVS++   +++ +KL    +KL ++ 
Sbjct: 244 KVIDGTFPDYNAIIPKSHNKSVLIESEVLSNAIDRVSVVVFDKVKVIKLRFVDNKLILSA 303

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + D G A E + V Y+   M I  N +YL+E +        V  + +     + +SV +
Sbjct: 304 ASSDQGDAREELEVDYSGEDMTIGLNARYLMEAL------YCVKGKCILSFYDAGTSVLM 357

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++        N  +  Y++MPMRI
Sbjct: 358 QEQE--------NIDDFTYIIMPMRI 375


>gi|18308984|ref|NP_560918.1| DNA polymerase III subunit beta [Clostridium perfringens str. 13]
 gi|110798947|ref|YP_694477.1| DNA polymerase III subunit beta [Clostridium perfringens ATCC
           13124]
 gi|110803106|ref|YP_697353.1| DNA polymerase III subunit beta [Clostridium perfringens SM101]
 gi|168207735|ref|ZP_02633740.1| DNA polymerase III, beta subunit [Clostridium perfringens E str.
           JGS1987]
 gi|168212005|ref|ZP_02637630.1| DNA polymerase III, beta subunit [Clostridium perfringens B str.
           ATCC 3626]
 gi|168215268|ref|ZP_02640893.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str.
           F4969]
 gi|168218305|ref|ZP_02643930.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC
           8239]
 gi|169343474|ref|ZP_02864474.1| DNA polymerase III, beta subunit [Clostridium perfringens C str.
           JGS1495]
 gi|182627053|ref|ZP_02954778.1| DNA polymerase III, beta subunit [Clostridium perfringens D str.
           JGS1721]
 gi|18143659|dbj|BAB79708.1| DNA-directed DNA polymerase III beta chain [Clostridium perfringens
           str. 13]
 gi|110673594|gb|ABG82581.1| DNA polymerase III, beta subunit [Clostridium perfringens ATCC
           13124]
 gi|110683607|gb|ABG86977.1| DNA polymerase III, beta subunit [Clostridium perfringens SM101]
 gi|169298426|gb|EDS80515.1| DNA polymerase III, beta subunit [Clostridium perfringens C str.
           JGS1495]
 gi|170660920|gb|EDT13603.1| DNA polymerase III, beta subunit [Clostridium perfringens E str.
           JGS1987]
 gi|170710065|gb|EDT22247.1| DNA polymerase III, beta subunit [Clostridium perfringens B str.
           ATCC 3626]
 gi|170713330|gb|EDT25512.1| DNA polymerase III, beta subunit [Clostridium perfringens CPE str.
           F4969]
 gi|177907579|gb|EDT70218.1| DNA polymerase III, beta subunit [Clostridium perfringens D str.
           JGS1721]
 gi|182379690|gb|EDT77169.1| DNA polymerase III, beta subunit [Clostridium perfringens NCTC
           8239]
          Length = 366

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 188/386 (48%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T +++ + E +  A + I  K+T+P+   + ++A++ ++ I  S  ++ I     A 
Sbjct: 1   MIFTCDKNKLQESIAIAQKAITGKSTMPILEGLYIEASENIVTIIGSDKDVSIETKFEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V A +  +I+RKL +          E    + I+   S F L      +FPS
Sbjct: 61  VTEPGKLVVDAKIFGEIIRKLPNDKIKIETVSEEA---IRITCQKSVFDLLHMNAEDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +   +LKN+++ T FA+A +E R  L GI F I   D KL  VA DG+R
Sbjct: 118 LPKINENMIFSINQGILKNMIKGTSFAIAQDETRPILQGILFEIK--DSKLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I        + ++P K + E+ +IL   +  V ++ + + I  N+    +  R
Sbjct: 176 LAIRTENIDTN--NTINAVIPGKTLNEVAKILEDSEEIVNITFTPNHILFNMGDTKVISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y  ++P  +  ++ V+   L+  ++R S+M+       VK  ++ + + +T 
Sbjct: 234 LLEGEFIKYDALLPKEHKLQIEVDKQTLQNGIERASLMAKEGNSNLVKFDITDENIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E + +      + I FN KYLL+++ N+      +D++  R+ SS S   I
Sbjct: 294 -NSQLGKVREEVTIKLQGDEIQIAFNSKYLLDVLKNME-----EDKIELRMTSSISPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R K+ D            Y+++P+RI
Sbjct: 348 RNKNNDLCE---------YLVLPVRI 364


>gi|184154478|ref|YP_001842818.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|183225822|dbj|BAG26338.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           fermentum IFO 3956]
 gi|299782687|gb|ADJ40685.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           fermentum CECT 5716]
          Length = 379

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 180/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK T+ R+  +  L +  R +  K+TIP+   + L  ++  + +  S  +I I   +   
Sbjct: 1   MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +V+  G+I + A    DIV+KL D        +   G +  I  G + F +   
Sbjct: 61  DGQYQLTVEEPGAIVLPARFFSDIVKKLPDQQVTIAVTD---GFQAQIMSGTAEFVINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   SFE+A+ +  +++ +T  A++ +E R  L GI  H++  D  L A
Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +     +   +++P  ++ E+ R++      VK+ +++++      
Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           +     RL++G +P+   +IP +++  + ++ +    A++R S++S   R   VKL++  
Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                 ++ ++ D+G   E++         ++I FN  ++ + + +    +     ++  
Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAK-----IILS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++     +   +   +           ++ P+R
Sbjct: 351 FTTALRPFTLVPTEDSDQ--------FVQLITPVR 377


>gi|145588191|ref|YP_001154788.1| DNA polymerase III subunit beta [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
 gi|145046597|gb|ABP33224.1| DNA polymerase III, beta subunit [Polynucleobacter necessarius
           subsp. asymbioticus QLW-P1DMWA-1]
          Length = 371

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 111/391 (28%), Positives = 207/391 (52%), Gaps = 26/391 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M++    R  +L+ L     I+ER++T+P+  ++L + N   +   ++  EI+IT     
Sbjct: 1   MQLVNTSRDSLLKPLQVVSGIVERRHTLPILANLLFKKNGEKVSFISTDIEIQITTNANF 60

Query: 60  SVDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V     + TV+A  L DI+R L +G      K+N     + +  G S F LQ+   +EF
Sbjct: 61  GVGSEDVTTTVAARKLLDILRALPEGEVSLNLKDN----RMVVQSGKSRFSLQTLSATEF 116

Query: 119 PSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P  +   E   ++ +     + L+ + HF+MA ++IRYYLNG+   +  ++  + AVATD
Sbjct: 117 PVMQSVGEVTAAWSMTQKSFRQLISQVHFSMAQQDIRYYLNGMLLVVEGKE--VVAVATD 174

Query: 178 GHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           GHRLA + V++    +   +   II+PRK + E   +L   D S+++SL+ +++  +   
Sbjct: 175 GHRLAFSRVELTEAPSGSGQRQEIIIPRKTILECQHLLEDSDESLEISLTANQVKFSFGD 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           + +  +L++G+FP++Q VIP  +   L V    L+ A+ R +I+++ + + V+ SLS ++
Sbjct: 235 IELISKLVEGKFPDFQRVIPKGHKNTLVVGRDALQAALQRAAILTTDKFKGVRFSLSPNR 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N +  +A E +   Y+   ++I FN  YLL+++ N+      ++++   L  +N
Sbjct: 295 ITIQSTNAEQEEAQEEIETEYSGDAVEIGFNVSYLLDVLSNLK-----NEKIQISLGDAN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS  +     +         N  YV+MPMRI
Sbjct: 350 SSAVVTLPGSE---------NFKYVVMPMRI 371


>gi|158336234|ref|YP_001517408.1| DNA polymerase III subunit beta [Acaryochloris marina MBIC11017]
 gi|158306475|gb|ABW28092.1| DNA polymerase III, beta subunit [Acaryochloris marina MBIC11017]
          Length = 372

 Score =  307 bits (787), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 183/391 (46%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++SD+   L    R++    T PV  +VLL A    L +      + I   I A 
Sbjct: 1   MKLVCQQSDLNSKLSLLSRVVPSNPTHPVLANVLLTAQAERLGLTVFDLSLGIQVWIAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++T+ A  L DIV +L +   I    ++   T V ++    ++ +Q     EFP 
Sbjct: 61  VEETGALTLPARFLNDIVSRLPN-CDIEVETDD---TAVTLTCDSGHYQMQGLVAEEFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + + + +L + V    ++ T FA +T+E +  L G+  + +E         TDGHR
Sbjct: 117 LPSLDEIPALDLPTDVFLEGLQATLFAASTDESKQILTGLHLNTSESG--FEFATTDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI----ESLS 236
           LA+A         +  ++ +P KA+ E+ R+L   ++ V +    ++    +     +  
Sbjct: 175 LAIANFP-DLVTPEPMTMTIPAKALRELERMLGRVNADVALRFDTNQAIFELIGEQGTER 233

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDK 294
           +S RL++G++P Y  ++P   ++++ V    L  +V+R++++++ +   ++L +      
Sbjct: 234 LSCRLLEGQYPAYPQLVPKQFERQVTVERQLLLSSVERIAVLAARKNNIIRLKIDSAEQN 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++ + P++G   E +    +   +DI FN KYL + +  + S      EV  +++S+ 
Sbjct: 294 VALSAEAPELGMGEERLPAQISGEDLDIAFNVKYLSDGLKALDSQ-----EVQLQMNSAT 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               +            +     Y++MP++I
Sbjct: 349 MPAVLSP---------LSGRQITYLIMPIQI 370


>gi|296268000|ref|YP_003650632.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833]
 gi|296090787|gb|ADG86739.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833]
          Length = 378

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 166/392 (42%), Gaps = 23/392 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITGAIPA 59
           M   ++R  + E +    R +  + ++PV   + L+  D   L++     E+     +  
Sbjct: 1   MLFRIDRDQLAEAVAWTARSLPTRPSMPVLAGMRLEVTDDHRLKLSGFDYEVSAEVTLDL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G + VS  LL +I R L              G +  ++ G + F L + P  ++P
Sbjct: 61  ETGEPGVVLVSGRLLAEITRALPAQPVNFTLD----GAKAVVTCGSTRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S            +  V  + V +   A+  ++    L G+   I  + + L   ATD +
Sbjct: 117 SLPVMPPAAGRVGS-DVFASAVAQVAVAVGKDDTLPMLTGVRMEIEGDLITL--AATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIE 233
           RLAV E+        + ++ ++P + + +I + L    + V+++LS     E  I  +  
Sbjct: 174 RLAVRELKWEPAQPGLQAVAMIPGRTLADIAKALGGTGAEVEIALSSGGTGEGMIGFSSA 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+D EFP Y++++P        V  +   +AV RV++++  R   V+L+    
Sbjct: 234 GRRTTTRLLDPEFPKYRSLLPTEFSARADVATSAFVEAVKRVALVA-ERNTPVRLTFRGG 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +   + D  +A+E + V +    + I FN++YLL+ +  + SD         +  + 
Sbjct: 293 EVVLEAGSGDEAQAVEVLPVDFEGDEITIAFNHQYLLDGLAVLDSDV-----ARMQFTTP 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I          ++   +  Y++MP+R+
Sbjct: 348 TKPAIITA---GKPAGEEAASDYRYLIMPIRL 376


>gi|261854632|ref|YP_003261915.1| DNA polymerase III subunit beta [Halothiobacillus neapolitanus c2]
 gi|261835101|gb|ACX94868.1| DNA polymerase III, beta subunit [Halothiobacillus neapolitanus c2]
          Length = 370

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 117/387 (30%), Positives = 196/387 (50%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V+R      +      +E++ T+ +  ++LL+  DG L + A+  EI++  ++   
Sbjct: 1   MQFAVDRDRFSSAINQVIGGVEKRQTMQILSNLLLEVADGRLTLVATDLEIQLRTSVDVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ TV+A  L DIV+     A+I+  + +     + I  G   F L S     FP 
Sbjct: 61  MQAPGATTVNARKLADIVKSASQDAKIALTQTD---GWLEIDIGTGVFRLASIEAGSFPQ 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +     +  +    L  L+++T F+MA +++RY+LNG+   +     ++ AVATDGH
Sbjct: 118 MTIDAATQSTVSITQKNLYALIDKTQFSMAQQDVRYFLNGLLLEVKPG--QMTAVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
           RLA A +           +IVPRK V E+L+ L    D  V ++  +++I L I    + 
Sbjct: 176 RLAYAHLSDERLTENNRQVIVPRKMVSEMLKALDRDSDDEVSLAFRDNQIELLIGENYLI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG++P+Y  V+P SN K L V+ T L+Q + R SI+S+ R       LS  +L + 
Sbjct: 236 SKLIDGKYPDYSRVMPQSNSKILIVSKTELKQVLQRASILSNERFSGAYFYLSPGRLMIE 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +   + E+M+V Y+   + I FN  YLL I+  I S     +EV   L++  SSV 
Sbjct: 296 SSNAEHESSKETMSVGYDASDLKISFNISYLLNILAVIES-----EEVCMELEAPESSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+             +++ YVLMPM++
Sbjct: 351 IKPV-------MPGDIDSKYVLMPMKL 370


>gi|86133972|ref|ZP_01052554.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152]
 gi|85820835|gb|EAQ41982.1| DNA polymerase III, beta subunit [Polaribacter sp. MED152]
          Length = 372

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 179/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L++ AS  E  ++  +   
Sbjct: 1   MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENQLKVSASDLETTMSSVVDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL D ++   D          E    + IS     + +  F   EFP 
Sbjct: 61  SDSSGSIAVSARLLLDTLKTFPDQPLTFKT---EGDNTIEISSDQGKYDMAYFGGDEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +++L   + +T FA   +++R  ++G+FF  + + L    VATD H+
Sbjct: 118 AVSLPSPSKTVVPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L            +    I+P+K +  +  IL   +S V +  +++      +++ +  R
Sbjct: 176 LVKYSRT-DVTADQTAEFIMPKKPLNLLKGILGGSESDVTIEYNDANAKFTFDNIVLVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L V+  +   +V RVSI SS     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E ++  Y    M I FN ++L E+++N++S +V+       +   N +  +
Sbjct: 295 DLDFSNKADERLSCDYQGDDMQIGFNSRFLSEMLNNLNSSDVL-----IEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPID-----GTDEGEQVTMLVMPVML 370


>gi|298491074|ref|YP_003721251.1| DNA polymerase IF1 subunit beta ['Nostoc azollae' 0708]
 gi|298232992|gb|ADI64128.1| DNA polymerase III, beta subunit ['Nostoc azollae' 0708]
          Length = 382

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 184/396 (46%), Gaps = 27/396 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I     
Sbjct: 1   MKLVCSQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAETNQVSLTAFDLSLGIRSTFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE---LGTEVNISHGDSNFYLQSFPE 115
           A V   G+I + A LL DI  +L +G      +  +    G  V +      + +++   
Sbjct: 61  AEVIEGGAIALPAKLLVDITSRLPEGEITLDDESGDNTGEGILVTLKPKSGKYQVRAMGA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     E   + +L ++ +   ++ + FA + +E +  L G+   + ++   L   A
Sbjct: 121 EEFPELPVIESSEAIQLTTAAVIEGLKGSLFATSADETKQVLTGVHLTVKQD--TLEFAA 178

Query: 176 TDGHRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLN 231
           TDGHRLAV E          +   + VP +A+ E+ R+L  SS + +V + L   ++  +
Sbjct: 179 TDGHRLAVLETTNERPIDSNEQLEVTVPARALRELQRMLAHSSLEETVALYLDPGQVVFS 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++ R ++G++P Y+ +IP   ++++ +        ++R+++++  +   VK+S+ 
Sbjct: 239 WQNQRLTSRTLEGQYPAYRQLIPRQFERQVTLERRQFISTLERIAVLADQKNNIVKVSID 298

Query: 292 --SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             + ++ ++ +  D+G   ESM    +   +DI FN KYL+E +  + S      E+   
Sbjct: 299 NANQEITLSCEAQDVGSGTESMPAKISGEDIDIAFNVKYLMEGVKELPSS-----EIQMH 353

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L+ S + V                +   Y+ MP+++
Sbjct: 354 LNQSLTPVVFTP---------LGGLKMTYLAMPVQL 380


>gi|257871390|ref|ZP_05651043.1| DNA polymerase subunit III [Enterococcus gallinarum EG2]
 gi|257805554|gb|EEV34376.1| DNA polymerase subunit III [Enterococcus gallinarum EG2]
          Length = 376

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 188/393 (47%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ R++ ++ L    R I  K TIP+   V L   D  L +  S  +I I   +   
Sbjct: 1   MKVTLNRTEFMQELQTVQRAISSKTTIPILTGVKLVLTDKGLTLTGSNADISIETFLSVE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +I+R+L D        EN    +V I+ G +NF +   
Sbjct: 61  KEKVQMKIEQTGAIVLQARFFSEIIRRLPDNTVTLEVIEN---NQVAITSGKANFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     E+ + +L  +V  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADSYPHLPVVESQDRIEVPAHILNKIVNETVFAVSQHESRPILTGVHFVL--ENKKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + +  A   +I++P K++ E+ R L+ ++ ++++S+ ++++     
Sbjct: 176 VATDSHRLSQRVIPLESGEAN-FNIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTN 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +   L  A++R S++S   R   V+LS++ 
Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLSAIERASLLSHEGRNNIVRLSINE 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  E ++    +  P++I FN  Y+   +         D  +  R  
Sbjct: 295 DSVILYGNSPEIGKVEEDLSYEQVSGEPLEISFNPDYMKAALRAFG-----DTSITIRFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+     +   +         + +   ++ P+R
Sbjct: 350 SAIRPFTLEPTES--------QGSFIQLITPVR 374


>gi|86143001|ref|ZP_01061423.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217]
 gi|85830446|gb|EAQ48905.1| DNA polymerase III, beta chain [Leeuwenhoekiella blandensis MED217]
          Length = 372

 Score =  307 bits (786), Expect = 2e-81,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 180/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L +  + +L++ AS  E  +   +   
Sbjct: 1   MKFIVSSSYLLKQLQVLGGVISNSNTLPILDNFLFELEENVLKVSASDLETTMIATLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+I V A LL D ++   +        +N     + IS     + L      EFP+
Sbjct: 61  SEDSGNIAVPARLLLDTLKTFPEQPLTFVAGDN---NTIEISSNHGKYALAYASGEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      + + VL   V  T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 AVELDDPSKVTIPAGVLATAVSNTIFATGNDDLRPVMSGVFFQFDTEGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         Q  +    I+P+K +  +  IL+S D  + V  ++S    + +++ +  R
Sbjct: 176 LVKYGRT-DVQANQTAEFIMPKKPLNLLKGILASSDDDINVEYNDSNAKFSFDNVQLLCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++      +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLIIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L+E+++N+++++     V   +   N +  +
Sbjct: 295 DVDYSNKAEERLTCDYQGDDMQIGFNSRFLVEMLNNLNAND-----VSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPVD-----GLDEGEKVTMLVMPVML 370


>gi|301065127|ref|YP_003787150.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str.
           Zhang]
 gi|300437534|gb|ADK17300.1| DNA polymerase sliding clamp subunit [Lactobacillus casei str.
           Zhang]
          Length = 379

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 174/395 (44%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A 
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F +   
Sbjct: 61  DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  +++ V++ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADAALSVSADVVRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   + +    A    II+P K++ E+ R+LS     +++ ++E+++     
Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++S      V    L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +  K  +  ++PD+G   E ++    +   ++I FN  Y+ + +       +  D     
Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGEDLEISFNPDYMKDALQGFGQTAIEVD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +      +   +         K     ++ P+R
Sbjct: 351 FTAPLRPFTLVPTED--------KERFIQLITPVR 377


>gi|116493576|ref|YP_805310.1| DNA polymerase sliding clamp subunit [Lactobacillus casei ATCC 334]
 gi|191636826|ref|YP_001985992.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei
           BL23]
 gi|239630806|ref|ZP_04673837.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|116103726|gb|ABJ68868.1| DNA polymerase III, beta subunit [Lactobacillus casei ATCC 334]
 gi|190711128|emb|CAQ65134.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus casei
           BL23]
 gi|239527089|gb|EEQ66090.1| DNA polymerase III [Lactobacillus paracasei subsp. paracasei
           8700:2]
 gi|327380863|gb|AEA52339.1| DNA-directed DNA polymerase [Lactobacillus casei LC2W]
 gi|327384029|gb|AEA55503.1| DNA-directed DNA polymerase [Lactobacillus casei BD-II]
          Length = 379

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 174/395 (44%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A 
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDSGLILTGSDADISIESRINAT 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F +   
Sbjct: 61  DENNDLQIGSTGEIVLPARFFSEIVKRLPESTMTLEVKDN---FQTVITSGASEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  +++ VL+ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADAALSVSADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   + +    A    II+P K++ E+ R+LS     +++ ++E+++     
Sbjct: 176 VATDSHRLAQRSLTLPTASASDYDIIIPGKSLTELSRMLSDDVEKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++S      V    L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +  K  +  ++PD+G   E ++    +   ++I FN  Y+ + +       +  D     
Sbjct: 296 ADQKATIYGNSPDVGNVEEVLSFNKLSGEDLEISFNPDYMKDALQGFGQTAIEVD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +      +   +         K     ++ P+R
Sbjct: 351 FTAPLRPFTLVPTED--------KERFIQLITPVR 377


>gi|1321905|emb|CAA63258.1| dnaN [Mycobacterium tuberculosis H37Rv]
          Length = 399

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 85/400 (21%), Positives = 165/400 (41%), Gaps = 34/400 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             + R    + +    + +  +  +PV   VLL  +D  L I     E+     + A + 
Sbjct: 15  FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGFDYEVSAEAQVGAEIV 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GS+ VS  LL DI R L +       +    G  V ++ G++ F L + P  ++P+  
Sbjct: 75  SPGSVLVSGRLLSDITRALPNKPVDVHVE----GNRVALTCGNARFSLPTMPVEDYPTLP 130

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L + +    + +   A   ++    L GI        L     ATD  RLA
Sbjct: 131 TLPEETGL-LPAELFAEAISQVAIAAGRDDTLPMLTGIRVE----SLVRRGCATDS-RLA 184

Query: 183 VAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIES 234
           V E++  A    +  +++VP K + E  +      S V++SL        +  + ++   
Sbjct: 185 VRELEWSASSPDIEAAVLVPAKTLAEAAKA-GIGGSDVRLSLGTGPGVGKDGLLGISGNG 243

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+D EFP ++ ++P  +     ++   L +A+  V++++  R   V++  +   
Sbjct: 244 KRSTTRLLDAEFPKFRQLLPTEHTAVATMDVAELIEAIKLVALVA-DRGAQVRMEFADGS 302

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + ++    D+G+A E + V Y   P+ I FN  YL + + ++ S     + V F   ++ 
Sbjct: 303 VRLSAGADDVGRAEEDLVVDYAGEPLTIAFNPTYLTDGLSSLRS-----ERVSFGFTTAG 357

Query: 355 SSVFIRGKDKDSKNN---------KDNKVNAFYVLMPMRI 385
               +R    D +                +  Y+LMP+R+
Sbjct: 358 KPALLRPVSGDDRPVAGLNGNGPFPAVSTDYVYLLMPVRL 397



 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 28/155 (18%), Positives = 60/155 (38%), Gaps = 11/155 (7%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +F L      + V      +        L+G+    ++  L +     D    A A+
Sbjct: 11  TDLTFRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISGF--DYEVSAEAQ 68

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDG 244
           V   A+I    S++V  + + +I R L +K   V V    +R+ L   +   S+  +   
Sbjct: 69  V--GAEIVSPGSVLVSGRLLSDITRALPNKPVDVHVE--GNRVALTCGNARFSLPTMPVE 124

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           ++P     +P   ++   +      +A+ +V+I +
Sbjct: 125 DYPT----LPTLPEETGLLPAELFAEAISQVAIAA 155


>gi|88802627|ref|ZP_01118154.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P]
 gi|88781485|gb|EAR12663.1| DNA polymerase III, beta chain [Polaribacter irgensii 23-P]
          Length = 372

 Score =  307 bits (786), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 178/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + ++  L+I AS  E  ++  +   
Sbjct: 1   MKFIVSSSQLLKQLQVLGGVINSNNTLPILDNFLFELSENNLKISASDLETTMSSVVTVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL D ++   D          E    + IS     + +  F   EFP 
Sbjct: 61  SDSTGSIAVSARLLLDTLKTFPDQPLTFKT---EGANTIEISSDQGKYDMAYFGGDEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +++L   + +T FA   +++R  ++G+FF  + + L    VATD H+
Sbjct: 118 ALSLPSPSKTVIPANILGTAISKTIFAAGNDDLRPVMSGVFFQFSSQSLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L            +    I+P+K +  +  IL   DS V +  +++      +++ +  R
Sbjct: 176 LVKYSRT-DVTADQTAEFIMPKKPLNLLKGILGGSDSDVTIEYNDANAKFTFDNIVLVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L V+  +   +V RVSI SS     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTVDRASFLNSVRRVSIFSSKTTHQIRLKMAGTELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E ++  Y    M I FN ++L E++ N+SS      EV+  +   N +  +
Sbjct: 295 DLDFANKADERLSCDYQGDDMQIGFNSRFLSEMLSNLSST-----EVLIEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPID-----GTDEGEQVTMLVMPVML 370


>gi|81427618|ref|YP_394615.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei
           subsp. sakei 23K]
 gi|78609257|emb|CAI54304.1| DNA-directed DNA polymerase III, beta subunit [Lactobacillus sakei
           subsp. sakei 23K]
          Length = 379

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R+  ++ L    R I  K TIP+   + L  +   L +  S  +I I   + AS
Sbjct: 1   MKFSINRALFIKTLNDVQRAISAKTTIPILTGLKLVLSQEGLTLTGSDADISIEATLSAS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  G I + A    +IV+KL +         N    +  I  G S F +   
Sbjct: 61  DEKNQLVVEEVGEIVLPARFFSEIVKKLPEDQMRIAVGNN---FQTTIRSGKSEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +F +++ VLK L+ +T  A++ +E R  L G+   +   + ++ A
Sbjct: 118 DANSYPHLPEIAGQNTFSISTDVLKQLIHQTVIAVSNQESRPILTGVHLVLA--NGEMLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA  ++ +         +I+P K++ E+ R L+     V++ ++E+++     
Sbjct: 176 VATDSHRLAQRKLPVALPSDANYDVIIPGKSLVELSRTLADDAEDVEIRIAENQVLFKAG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL-- 290
           +L+   RL++G +P+   +IP S+  ++  N   L  A++R S++S   R   V+L+L  
Sbjct: 236 NLAFYSRLLEGNYPDTARLIPTSSSTQIEFNAPVLLAAIERASLLSHESRNNVVRLTLDT 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            ++   +  ++PD+G   E++         ++I FN  Y+ + + +          +V  
Sbjct: 296 EANTAIIYGNSPDVGNVEEALQFENLTGESLEISFNPDYMKDALRSFGQTT-----IVIN 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++     +   +         + +   ++ P+R
Sbjct: 351 FTAALRPFTLVPSED--------QEHYIQLITPVR 377


>gi|303240058|ref|ZP_07326579.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2]
 gi|302592327|gb|EFL62054.1| DNA polymerase III, beta subunit [Acetivibrio cellulolyticus CD2]
          Length = 367

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 193/386 (50%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +  ++E +    + +  K+T+P+   +LL+A+    ++  +  EI I   + A 
Sbjct: 1   MKVICSKEHLIEGINIVQKAVSTKSTLPILEGILLEASSD-FKLTGNDLEIGIECYVQAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ +  DIVR+L D   +     N   + V I   +S+F L+  P   +P+
Sbjct: 60  IQTQGSIVLNSKMFGDIVRRLPDSEVLIEVLPN---SSVIIECENSHFELKGMPSDNYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +F +    +++++ +T FA++ +E R  L G      E ++    V+ DG R
Sbjct: 117 LPSIKKENAFIIKQKTVRDMIRQTLFAVSIDENRPILTGSLLECKENNVTF--VSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ +  I  +  K  ++++P K + EI++IL   D  + +  ++++I  +I    +  R
Sbjct: 175 LALRKCIIENE-NKSFNVVIPGKTLNEIVKILQPIDEEISIYSTQNQILFDIGKCKVVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           L++GE+ NY ++IP   + ++RV   ++  +++R S++ +  +   VK ++  +K+ ++ 
Sbjct: 234 LLEGEYLNYNSIIPKDFETKVRVKTKDILSSLERASLITAEEKKYPVKFNVMDEKIVISS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E + V  +   +DI FN KY +E +  I      D+EV     SS     I
Sbjct: 294 -NTEIGAVREEVRVDISGNRLDIGFNPKYFIEALKVIE-----DEEVDIYFTSSIGPCTI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R            K    Y+++P+RI
Sbjct: 348 RPI---------GKQEYAYMILPVRI 364


>gi|159902541|ref|YP_001549885.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9211]
 gi|159887717|gb|ABX07931.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9211]
          Length = 397

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 94/399 (23%), Positives = 184/399 (46%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  ++LL A+ G   L +      + I  ++ 
Sbjct: 13  MKLVCSQSELNSALQLVSRAVASRPTHPVLANILLTADAGTGRLSLTGFDLNLGIQTSLT 72

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+V G+ T+ A L  +IV KL   + I+   + ELG +VN++     + ++     +F
Sbjct: 73  ASVEVSGATTLPAKLFGEIVSKLSSDSPINLVSD-ELGEKVNLTSKSGTYQMRGLNADDF 131

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   S ++   +  N ++ T FA +++E +  L G+    +     L A ATDG
Sbjct: 132 PELPLVQTGASLQINPLIFANALKSTLFASSSDESKQILTGVHLIFDGN--ILQAAATDG 189

Query: 179 HRLAVAEVD--------IVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRI 228
           HRLAV  ++                  + +P K++ EI R + +   +  + +     ++
Sbjct: 190 HRLAVLNLEDAINLNSSTNLNTNDKIEVTLPAKSLREIERFIGNYKNEEKISLFYDSGQV 249

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                +  ++ R+++G++PNY  +IP S    L  +      A++R+++++      +K+
Sbjct: 250 VFTALNQVVTTRILEGDYPNYNQLIPESFSNILEFDRKPFISALERIAVLADQHNNVIKI 309

Query: 289 SLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S     D + +T D  D+G  +ES+ V +N     I FN +YLLE +         +D++
Sbjct: 310 SKEPSSDLVKITADAQDVGSGVESIPVKFNGDNFQIAFNVRYLLEGLRVFE-----EDKI 364

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             R +   +   +   D         +    Y++MP++I
Sbjct: 365 CLRCNLPTTPAILSSIDD--------QNTFIYLVMPIQI 395


>gi|163788818|ref|ZP_02183263.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1]
 gi|159876055|gb|EDP70114.1| DNA polymerase III, beta-subunit [Flavobacteriales bacterium ALC-1]
          Length = 372

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 179/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L + +   L I AS  E  ++  I   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELSQSKLTISASDLETTMSSTIDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI + A LL D ++   +       +EN     V IS     + L     +EFP+
Sbjct: 61  SDSEGSIALPARLLLDTLKTFPEQPLTFVVEEN---NTVEISSNHGKYALAYADGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      +   +L   + +T FA   +++R  ++G+FF  ++++L    VATD H+
Sbjct: 118 AVSIEDASKTTITGDILATAISKTIFAAGNDDLRPVMSGVFFQFSQDNLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     D      +    I+P+K +  +  IL+  D  V V  +ES      E+  +  R
Sbjct: 176 LVKYTRD-DVSATETAEFIMPKKPLNLLKGILAGSDDGVLVEYNESNAKFTFENSVLICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++ T    +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLVIDRTQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+I+N++S     D V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMINNLNS-----DNVQLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D   +   ++MP+ +
Sbjct: 350 TPID-----GLDEGEHVTMLVMPVML 370


>gi|81251085|gb|ABB69885.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS18]
          Length = 369

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 125/389 (32%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQD 60

Query: 60  SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           SVD     S+TV+A  L DI+R L D AQ+           +    G S F LQ+ P  +
Sbjct: 61  SVDNDEEHSVTVAAKKLQDILRALPDKAQVVLEM---GENRLLAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E      +    LK+L+    +AMA ++IRYYLNG    +  ED  L  VAT
Sbjct: 118 FPKFPESKEAQGKVTVQQKELKHLLSMVQYAMAQQDIRYYLNG--LLLLLEDSYLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + + A   K   +I+PRK V E+ ++L+  D  + + + ++++     ++ 
Sbjct: 176 DGHRLAFALMTLEAPQEKKE-VILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVV 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R SI+S+ + + V+L L++D L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +  +A E + + Y+   +DI FN  YLL++++N +S     + +      +NSS
Sbjct: 295 IVCSNSEQEEAQEELELQYDGEALDIGFNITYLLDVLNNTTS-----EAIRCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     D         N  YV+MPMRI
Sbjct: 350 ALITIPGND---------NFKYVVMPMRI 369


>gi|256003887|ref|ZP_05428874.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM
           2360]
 gi|281418688|ref|ZP_06249707.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20]
 gi|255992225|gb|EEU02320.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM
           2360]
 gi|281407772|gb|EFB38031.1| DNA polymerase III, beta subunit [Clostridium thermocellum JW20]
 gi|316939068|gb|ADU73102.1| DNA polymerase III, beta subunit [Clostridium thermocellum DSM
           1313]
          Length = 366

 Score =  306 bits (785), Expect = 3e-81,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 190/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  ++E +    + +  K T+ +   +LL+A D   ++  +  E+ I   I A 
Sbjct: 1   MKIVCSKEQLMEGINVVQKAVPTKATLTILEGILLEAYDN-FKMTGNDLELGIECLIDAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ +  DIVR+L D   +   KEN     V I   +S+F L+  P   FPS
Sbjct: 60  ILEKGSIVLNSKMFGDIVRRLPDSEVLIEVKEN---NTVIIECDNSHFELRGMPSDSFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     +++   +++++ +T FA++ E  R  L G        ++    V+ DG R
Sbjct: 117 LPSIEKENMIKVSQKAIRDMIRQTLFAVSMEGTRPILTGSLIECAGNEITF--VSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ + +   +     S++VP K + EI +IL   D  + +  S+++I   I +  +  R
Sbjct: 175 MALRK-NFNNEGFSEFSVVVPAKTLSEIGKILQPVDEDIYIYSSQNQILFEIGNCKVVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           L++GE+ NY+++IP   +  +R+   +L  +++R S++ S  +   VK ++  DK+ +T 
Sbjct: 234 LLEGEYLNYKSIIPPEYETSVRLRTEDLLSSLERASLITSDEKKYPVKFNIIDDKIIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E + V  N   M++ FN +Y +E +  I      D+ V    +SS     I
Sbjct: 294 -NTEIGAVREEIRVEVNGSNMEVGFNPRYFIEALRVID-----DELVDIYFNSSVGPCTI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  + DS           Y+++P+RI
Sbjct: 348 RPLEGDS---------FAYMILPVRI 364


>gi|289577267|ref|YP_003475894.1| DNA polymerase III subunit beta [Thermoanaerobacter italicus Ab9]
 gi|289526980|gb|ADD01332.1| DNA polymerase III, beta subunit [Thermoanaerobacter italicus Ab9]
          Length = 370

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 190/389 (48%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A    ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKDQVKFSGTDLDIGIECQIPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V A +  ++VRKL +G       E++    VN+     NF +      EFP 
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEGDV---KIESDSQNTVNVICDSINFTIAGSDAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     SF+L  ++LK+L+++T F +A E+ R  L G+ F +   ++K  AVA DG R
Sbjct: 118 IPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGFR 175

Query: 181 LAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           +  +  SI++P K + EI +IL  +++ + +  + +++   IE+  
Sbjct: 176 MAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +    + 
Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N + GK +E + V      ++I FN +YLL+ +  I      ++E+     +S + 
Sbjct: 296 VSS-NSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+              +  Y+++P+++
Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369


>gi|167036433|ref|YP_001664011.1| DNA polymerase III subunit beta [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|167038677|ref|YP_001661662.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X514]
 gi|256751454|ref|ZP_05492332.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300913763|ref|ZP_07131080.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561]
 gi|307723220|ref|YP_003902971.1| DNA polymerase III subunit beta [Thermoanaerobacter sp. X513]
 gi|320114859|ref|YP_004185018.1| DNA polymerase III subunit beta [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
 gi|166852917|gb|ABY91326.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X514]
 gi|166855267|gb|ABY93675.1| DNA polymerase III, beta subunit [Thermoanaerobacter
           pseudethanolicus ATCC 33223]
 gi|256749673|gb|EEU62699.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus
           CCSD1]
 gi|300890448|gb|EFK85593.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X561]
 gi|307580281|gb|ADN53680.1| DNA polymerase III, beta subunit [Thermoanaerobacter sp. X513]
 gi|319927950|gb|ADV78635.1| DNA polymerase III, beta subunit [Thermoanaerobacter brockii subsp.
           finnii Ako-1]
          Length = 370

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 96/389 (24%), Positives = 191/389 (49%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A  G ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I V A +  ++VRKL +G       E++    VN+     NF +      EFP 
Sbjct: 61  IEEEGEIVVPAKIFSELVRKLPEGDV---KIESDSQNTVNVVCDSINFTIAGSDAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   SF+L  ++LK+L+ +T F +A E+ R  L G+ F + + ++K  AVA DG R
Sbjct: 118 IPLVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQTEVK--AVALDGFR 175

Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           +  +  SI++P K + EI RIL  +++ +++  + +++   IE+  
Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +    + 
Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N + GK IE + V      ++I FN +YLL+ +  I      ++E+     +S + 
Sbjct: 296 VSS-NSEKGKMIEKIEVDVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+              +  Y+++P+++
Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369


>gi|260662539|ref|ZP_05863434.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN]
 gi|260553230|gb|EEX26173.1| DNA polymerase III, beta subunit [Lactobacillus fermentum 28-3-CHN]
          Length = 379

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 80/395 (20%), Positives = 180/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK T+ R+  +  L +  R +  K+TIP+   + L  ++  + +  S  +I I   +   
Sbjct: 1   MKFTINRAAFIGQLNNVLRAVSSKSTIPILTGLKLVVDNNEVVLTGSDADISIETTLSGA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +V+  G+I + A    DIV+KL D        +   G +  I  G + F +   
Sbjct: 61  DGQYQLTVEEPGAIVLPARFFSDIVKKLPDQQVTIAVTD---GFQAQIMSGTAEFVINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   SFE+A+ +  +++ +T  A++ +E R  L GI  H++  D  L A
Sbjct: 118 DANNYPHLPEIDTAASFEVAADLFADVIRQTQIAVSHQESRPILTGI--HVSLADGILTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +     +   +++P  ++ E+ R++      VK+ +++++      
Sbjct: 176 VATDSHRLSQRKVRLENVGERQVDVVIPGTSLTELSRMIGDVKDPVKIQVTDNQALFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           +     RL++G +P+   +IP +++  + ++ +    A++R S++S   R   VKL++  
Sbjct: 236 NTRFYSRLLEGNYPDTSRLIPDTSETTVELDASAFLAAIERASLLSHQSRNNVVKLTVDP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                 ++ ++ D+G   E++         ++I FN  ++ + + +    +     ++  
Sbjct: 296 QAGLAKVSGNSADIGNVEENIATDRMEGSDLEISFNPDFMGDALKSFGQAK-----IILS 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++     +   +   +           ++ P+R
Sbjct: 351 FTTTLRPFTLVPTEDSDQ--------FVQLITPVR 377


>gi|150025164|ref|YP_001295990.1| DNA polymerase III, beta subunit [Flavobacterium psychrophilum
           JIP02/86]
 gi|149771705|emb|CAL43179.1| Probable DNA polymerase III, beta subunit [Flavobacterium
           psychrophilum JIP02/86]
          Length = 372

 Score =  306 bits (785), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 181/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L +     L + AS  E  ++ ++   
Sbjct: 1   MKFIVSSSYLLKQLQVLGSVINSSNTLPILDNFLFELKKNELLVSASDLETTMSASLTID 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS+ V A LL +I++   +       +EN     + IS     + L   P  EFP 
Sbjct: 61  SDSQGSVAVPAKLLLEILKTFPEQPLTFTVEEN---NTIEISSQSGKYALAYAPGDEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      + + VL   V +T FA   +++R  ++G+FF  + E   L  VATD H+
Sbjct: 118 AVNLEEPSKTIVPAEVLSTAVSKTIFAAGNDDLRPVMSGVFFQFSPEG--LIFVATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         + +++   I+PRK +  +  IL++ +  V +  ++S    + ++  ++ R
Sbjct: 176 LVKYART-DVKASQVADFIMPRKPLNILKGILATSNEEVTIEYNDSNATFSFDNYILTCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +  T    +V RV+I S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLMIERTQFLSSVRRVAIFSNKTTHQIRLKIAGTELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++LLE++ N+ SD ++       +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLLEMLGNLQSDMIM-----LEMSMPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPID-----GLDEGETVTMLVMPVML 370


>gi|269954812|ref|YP_003324601.1| DNA polymerase III subunit beta [Xylanimonas cellulosilytica DSM
           15894]
 gi|269303493|gb|ACZ29043.1| DNA polymerase III, beta subunit [Xylanimonas cellulosilytica DSM
           15894]
          Length = 377

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 169/390 (43%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK  V+R  + + +    R +  +   PV   V ++A+  G++ + +   E+     IPA
Sbjct: 1   MKFRVDRDVLADAVTWTARTLPTRPPAPVLAGVRIEADATGVISLSSFDYEVSARSEIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VS  LL DI R L           +  GT+V ++ G S F L + P  ++P
Sbjct: 61  EVSEPGTVLVSGRLLADIARALPHKP----VDVSLEGTKVVVTCGASRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  +     S  ++   L   V +   A + +E    L G+   I  E  ++  ++TD +
Sbjct: 117 TLPQMPE-LSGTVSGDALTLAVTQVSVAASRDETLPLLTGVRMEIEGE--RITLLSTDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           RLA+ E+          ++ +V  K + ++ + L +    V V LS       I      
Sbjct: 174 RLALRELTWTPATPGFSAVALVKAKTLIDVAKSLGAGGGLVNVGLSTGSGLDLIGFEAGG 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + +L+DG++P  + + P +      V    L  A  RVS+++  R   ++L+ +  +
Sbjct: 234 RHTTSQLVDGDYPAVRRLFPDATPIHAVVPTQALIDAARRVSLVA-ERNTPIRLAFTEGQ 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++        + + FN ++LL+ +  + +     D V       N
Sbjct: 293 VVLDAGQGDDAQASEALEAVLVGEDITVAFNPQFLLDGLTALGT-----DFVRLSFTHPN 347

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V   G++     + ++  +  Y+L+P+R
Sbjct: 348 KPVEFTGQES---LDGEDSSDYRYLLVPIR 374


>gi|15893300|ref|NP_346649.1| DNA polymerase III subunit beta [Clostridium acetobutylicum ATCC
           824]
 gi|15022819|gb|AAK77989.1|AE007513_2 DNA polymerase III beta subunit [Clostridium acetobutylicum ATCC
           824]
 gi|325507409|gb|ADZ19045.1| DNA polymerase III subunit beta [Clostridium acetobutylicum EA
           2018]
          Length = 366

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 188/386 (48%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   E++ + E +  A + +  K+T+PV   +L+   +  L +  S  ++ I   I   
Sbjct: 1   MKFICEKNILQEAIITAQKAVTGKSTMPVLQGILMSVQNNELTLIGSDIDLSIETKINVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + + A LL +I+RKL +        EN     V I+   S   L     ++FPS
Sbjct: 61  VLEEGKVVLDARLLSEIIRKLPNSKVEIQTIENNC---VEITCNKSKLTLVYLNPNDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +    F++    LK +++ T FA+A +E R  L G+ F I   D KL  VA DG+R
Sbjct: 118 LPEIDENSIFKINQKTLKTMIKGTIFAIAQDETRPILTGVLFEIK--DSKLNLVAIDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    I  + +   + ++P K + E+++IL   D  V ++ + + I  N+ +  +  R
Sbjct: 176 LALRSQYIDNETS--INAVIPGKTLNEVIKILED-DGDVNITFTSNHILFNLGNTKIISR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP   +  +      L   ++R S+M+       +KL +  D + +T 
Sbjct: 233 LLEGEFIKYNSIIPEEYNLNIVARKEELLDCIERASLMAKDGNNNLIKLDIEDDVMIITS 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E +N+     P+ I FN KYL++++  ++      +E+V    SS S   I
Sbjct: 293 -NSQLGNVREEINIILQGQPLKIAFNSKYLIDVLKIMN-----QEEIVMNFSSSISPCII 346

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K+ D         ++ Y+++P+R+
Sbjct: 347 KNKEND---------DSTYLILPVRL 363


>gi|260062622|ref|YP_003195702.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501]
 gi|88784189|gb|EAR15359.1| DNA polymerase III, beta chain [Robiginitalea biformata HTCC2501]
          Length = 372

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L   N   L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVISNSNTLPILDNFLFDLNGTKLTVSASDLETTMSSELEVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I V A LL D ++   +       ++N     V IS     + L     +EFP 
Sbjct: 61  SGDKGTIAVPARLLLDTLKTFPEQPLTFVVEDN---NTVEISSSHGKYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E       E+   +L   +++T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 AVELPDPSKTEIMGDILATAIDKTLFAAGNDDLRPVMSGVFFQFSPEGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         Q +++   I+P+K +  +  IL+  +  V V+ ++S       +  +  R
Sbjct: 176 LVKYRRT-DVQASEVAEFIMPKKPLNLLKGILAGSEDPVTVAYNDSNAKFLFANTVLVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +  + L  +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLVIQRSQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    + I FN ++L+E++ N+ S     DE+   +   N +  +
Sbjct: 295 DVDYSNKAEERLTCSYQGDDLQIGFNSRFLVEMLGNLGS-----DEISLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPAD-----GLDEGEFITMLVMPVML 370


>gi|288554607|ref|YP_003426542.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
 gi|288545767|gb|ADC49650.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
          Length = 380

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 93/397 (23%), Positives = 182/397 (45%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T++R   +  + +  + +  + TIP+   + + A+   + +  S  ++ I   IP  
Sbjct: 1   MQFTIQRDRFVHDVQNVAKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDVSIETFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  GSI + A    +IV+KL  G  I    +++  T   I  G S F L  
Sbjct: 61  DAENEIVTIEQEGSIVLQARFFAEIVKKLP-GETIELIVQDQFAT--TIRSGSSVFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F L   +LKN++ +T FA++T+E R  L G+     E +  L 
Sbjct: 118 LDPEEYPRLPQLEEDLLFRLPQDMLKNMIRQTVFAVSTQETRPVLTGVNLETEEGE--LI 175

Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+ +  I     +    ++++P K++ E+ +I+   +  + V ++E++I  
Sbjct: 176 CTATDSHRLAMRKATIERNDEELTFSNVVIPGKSLNELSKIIDDSNELIDVVVTENQILF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288
             ++L    RL++G++P  +N+IP  +     +      Q ++R  ++S   +   + L 
Sbjct: 236 KFKNLLFFSRLLEGKYPVTKNMIPAQSKTSFTLKTKPFLQTLERALLLSREGKNNVINLK 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +L    + +T   P++GK  E++         M I FN K +++ +  I S     +E+ 
Sbjct: 296 TLDEGLIEITSIQPEVGKVTENIQSEQMQGEDMRISFNGKNIIDALKVIDS-----EEIN 350

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                + S   IR  D D         +  ++  P+R
Sbjct: 351 IVFTGAMSPFVIRPTDHD---------HYLHLFSPVR 378


>gi|120436260|ref|YP_861946.1| DNA polymerase III subunit beta [Gramella forsetii KT0803]
 gi|117578410|emb|CAL66879.1| DNA polymerase III subunit beta [Gramella forsetii KT0803]
          Length = 372

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 180/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L   N+  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSNYLLKQLQILGGVINNSNTLPILDNFLFDLNNDELTVSASDLETTMSAKLKVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V A LL D ++   +       ++N     + +S     + L      EFP+
Sbjct: 61  SDSEGKIAVPAKLLLDTLKTFPEQPLTFVVEDN---NTIELSSNHGKYALAYADGEEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  + + +L + + +T FA   +++R  ++G+FF   E+ L    VATD H+
Sbjct: 118 PVELEDPSSTVVEADILASAISKTIFASGNDDLRPVMSGVFFQFTEDGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     +   +  +    I+P+K +  +  IL+  +S V +  ++S      +   +  R
Sbjct: 176 LVKYSRE-DIKANQAAEFIMPKKPLNLLKGILAGSESEVLIEYNDSNAKFTFDETQLICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +       +V RVSI S+     V+L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLTIERNQFLSSVRRVSIFSNKTTHQVRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L+E+++N+++     DEV+  +   N +  +
Sbjct: 295 DVDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLNNLTA-----DEVMLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPID-----GLDPGEKITMLVMPVML 370


>gi|163755511|ref|ZP_02162630.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1]
 gi|161324424|gb|EDP95754.1| DNA polymerase III, beta-subunit [Kordia algicida OT-1]
          Length = 372

 Score =  306 bits (784), Expect = 4e-81,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 185/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L Q N+  L++ AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFQLNENELKVSASDLETTMSSVLTVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I V A LL D ++   +       ++N     V IS     + L     +EFP+
Sbjct: 61  SDSTGNIAVPAKLLLDTLKTFPEQPLTFVVEDN---NTVEISSNHGKYALAYADGNEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           + E +   +  +A  VL   + +T FA   +++R  ++G+FF  + E+L    VATD H+
Sbjct: 118 SVELKEPSATTIAGHVLSTAISKTIFASGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   +     Q +++   I+P+K +  +  IL   +  V +  ++S      ++  +  R
Sbjct: 176 LVKYQRT-DLQASQVAEFIMPKKPLNLLKGILGGSEDDVVIEYNDSNAKFTFDNTVLVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +N      +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLEINRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N+ +     D+V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLGA-----DDVSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       +   +   ++MP+ +
Sbjct: 350 TPID-----GLEEGEHITMLVMPVML 370


>gi|317123179|ref|YP_004097291.1| DNA polymerase III subunit beta [Intrasporangium calvum DSM 43043]
 gi|315587267|gb|ADU46564.1| DNA polymerase III, beta subunit [Intrasporangium calvum DSM 43043]
          Length = 375

 Score =  306 bits (784), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 167/389 (42%), Gaps = 22/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +  +PV   VLL+A  DG L + A   E+     +PA
Sbjct: 1   MKFRVERDVLAEAVTWVARGVPARPPVPVLAGVLLEAAEDGTLTLSAFDYEVSARITVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G + V   LL +I R L           +  GT++N++ G S F L+  P +++P
Sbjct: 61  DVAEAGQVLVLGRLLAEISRNLPAKP----IDISTDGTKLNVTCGSSRFSLREMPVADYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +        S  +A  V    V +   A    +    L G+   +  +  K+  +ATD +
Sbjct: 117 TLPAAPEP-SGTIAGDVFTQAVAQVSIAADRGDTLPILTGVRMEVEGD--KIVLLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIH---LNIESL 235
           RLA+ E+           + ++P + + E  + L +   SV+++L               
Sbjct: 174 RLAMRELTWSPASPAASHVALIPARQLSETAKALGAS-GSVQIALGGGGDGLIGFEAGQR 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL+DGE+P   ++ P S D E  +    L +AV RV++++  R   V L  +  ++
Sbjct: 233 QATTRLLDGEYPKVTSIFPSSVDTEAVIETAALEEAVKRVALVA-ERNTPVLLKFTDGQV 291

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D  +A E++    +   + I FN +YLL+ +       V            + 
Sbjct: 292 AIEAGTGDDAQASEAVEAVLHGPEIQIAFNPQYLLDGLHA-----VGQPWSRLSFTQPSR 346

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + G+   ++ + D   +  YVLMP+R
Sbjct: 347 PAVLTGQ---AEADSDTDASYRYVLMPVR 372


>gi|282898715|ref|ZP_06306703.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii
           CS-505]
 gi|281196583|gb|EFA71492.1| DNA polymerase III, beta chain [Cylindrospermopsis raciborskii
           CS-505]
          Length = 382

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 190/396 (47%), Gaps = 27/396 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T P+  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLICSQSDLSTNLALVSRAVPSRPTHPILANVLLQADVNTNQVSLTAFDLSLGIRTSFT 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE---VNISHGDSNFYLQSFPE 115
           A V   G++ + A +L DI  +L +G      +  +  TE     +   +  + L+S   
Sbjct: 61  AEVIEGGAVALPAKILVDITSRLPEGDITLDDQSGDSTTEGINFILKPKNGKYELRSMGA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP     E     ++ ++ L   ++ + FA +++E +  L G+   + ++ L+    A
Sbjct: 121 EEFPELPLIESSNPIQITTAALVEGLKGSLFATSSDETKQVLTGVHLTVKQDVLEF--AA 178

Query: 176 TDGHRLAV--AEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLN 231
           TDGHRLAV     +   +  +   + VP +A+ E+ R+L+    + ++ + L E +I   
Sbjct: 179 TDGHRLAVLETINERPLENDEQLEVTVPARALRELQRMLNHSASEEAISLCLDEGQIVFA 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++ R ++G++P+Y+ +IP   +++L +        ++R++I++  +   VK+S++
Sbjct: 239 WQNQRLTSRTLEGQYPSYRQLIPRQFERQLVLERKQFISTLERIAILADQKNNIVKISMN 298

Query: 292 SD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   ++ ++ +  D+G A ESM    +   +DI FN KYLLE +  + S      E+   
Sbjct: 299 TGEQEITLSCEAQDVGNATESMPAQISGEDIDIAFNVKYLLEGLKELPST-----EIQMH 353

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L+ + + V                +   Y+ MP+++
Sbjct: 354 LNQNLTPVIFTP---------LGGLKMTYLAMPVQL 380


>gi|220905645|ref|YP_002480956.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7425]
 gi|219862256|gb|ACL42595.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7425]
          Length = 374

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 186/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +SD+   L    R++  K T PV  +VLL+A    L +      + +   IPA 
Sbjct: 1   MKLVCAQSDLSANLALLSRVVPSKPTHPVYANVLLEAEPDRLGLSVFDLSLGMQIWIPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +V GS T+ A    DIV +L +       +       V ++ G  ++ +Q     EF +
Sbjct: 61  TEVPGSFTLPARFFNDIVSRLPNAPITIAVE----SPTVTLACGAGHYQMQGLEAEEFTA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  L SS+L   ++ T FA +T+E +  L G+   +  + L+    ATDGHR
Sbjct: 117 LPDLSESESLHLPSSLLLEGLQATLFASSTDEAKQMLTGLHMSLQTDGLEF--AATDGHR 174

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----L 235
           LAVA           P S+ VP KA+ E+ R+L     ++ +   ++++     +     
Sbjct: 175 LAVAYGQPEEFSPDTPLSVTVPAKALRELERMLGRTPVALTLRCDQTQVVFEFATEQGMA 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SD 293
            +S RL++G +PNY+ ++P   ++++ V        ++R+++++  +   VK+ L   + 
Sbjct: 235 RLSSRLLEGSYPNYKQLLPRQFERQVTVERQPFLAGLERIAVLAMQKNNVVKIKLDAVNQ 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L ++ + P  G   ES+    +   +++ FN KYL++ +  +++      EV  +++++
Sbjct: 295 QLDVSAEAPQFGSGEESLPAQISGTDLEVAFNVKYLIDGLKAMTAS-----EVQIQMNAA 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + V +            +     Y++MP+++
Sbjct: 350 TAPVILSP---------LSGTKMTYLIMPIQL 372


>gi|81251073|gb|ABB69876.1| DNA polymerase III beta chain [Nitrosospira sp. NRS527]
          Length = 369

 Score =  306 bits (783), Expect = 5e-81,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 205/390 (52%), Gaps = 26/390 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT ++  
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQEKISFIATDLEIQITTSVE- 59

Query: 60  SVDVCG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
            V+  G   S+TV A  L DI+R L D  Q++          ++   G S F LQ+ P  
Sbjct: 60  DVNPAGEERSVTVPAKKLQDILRALPDKVQVTLET---GENRLHAKAGKSRFNLQTLPVE 116

Query: 117 EFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +FP   E  E      +    LK+++    +AMA ++IRYYLNG+   + +  LK+  VA
Sbjct: 117 DFPKFPESTEPQAKITIQQKELKHILSMVQYAMAQQDIRYYLNGLLLLMEDNYLKV--VA 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRLA A + + A   K   +I+PRK V E+ R+L+  D  V V   ++++     ++
Sbjct: 175 TDGHRLAFALMLLAAPQEKKE-VILPRKVVLELSRLLNDVDEPVTVEFLQNQVRFTFSNV 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +++DG+FP+Y  VIP   +K+  +N   L Q + R SI+S+ + + V+L L+S  L
Sbjct: 234 MLVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNL 293

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +  +N +  +A E + + Y    +DI FN  YLL+++++++      + V      +NS
Sbjct: 294 RIVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNC-----ETVRCAFGDANS 348

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  I               +  YV+MPMRI
Sbjct: 349 SALISIP---------GNNDFKYVVMPMRI 369


>gi|227511153|ref|ZP_03941202.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227523340|ref|ZP_03953389.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
 gi|227085635|gb|EEI20947.1| DNA-directed DNA polymerase [Lactobacillus buchneri ATCC 11577]
 gi|227089531|gb|EEI24843.1| DNA-directed DNA polymerase [Lactobacillus hilgardii ATCC 8290]
          Length = 379

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 97/395 (24%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R++  + L    R I  K TIP+   + LQA    L +  S  +I I   I   
Sbjct: 1   MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V+  G+I + A    DIV+KL +        EN    +  I+ G S+F +   
Sbjct: 61  NPDNLLAVESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   S  LA  +LK ++ +T  A++ +E R  L G+ F ++  D    A
Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +   I      ++P K++ E+ R++      + +S++E+++   I 
Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLIELSRMIDDNKEDIILSVTENQVLFTIG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
                 RL++G +P+   +IP S+D  +  +   L  +++R S++S + R   VK+++  
Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295

Query: 293 D--KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   + +  ++PD+G   E M         ++I FN  Y+ + + + S   +  D     
Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPKSVEGNELEISFNPDYMKDALRSFSQATINLD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             SS     +   +           +   ++ P+R
Sbjct: 351 FTSSLRPFTLTPTED--------SDSFVQLITPIR 377


>gi|81251081|gb|ABB69882.1| DNA polymerase III beta chain [Nitrosospira sp. NIJS16]
          Length = 369

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 124/389 (31%), Positives = 203/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIETDRDTLLKPLQMVTGIVERRHTLPILSNVLIERKHESISFIATDLEIQITTSAQD 60

Query: 60  SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           SVD     S+TV+A  L DI+R L D AQ+           +    G S F LQ+ P  +
Sbjct: 61  SVDNDEEHSVTVAAKKLQDILRALPDKAQVVLEM---GENRLLAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E      +    LK+L+    +A A ++IRYYLNG    +  ED  L  VAT
Sbjct: 118 FPKFPESKEAQGKVTVQQKELKHLLSMVQYATAQQDIRYYLNG--LLLLLEDSYLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + + A   K   +I+PRK V E+ ++L+  D  + + + ++++     ++ 
Sbjct: 176 DGHRLAFALMTLEAPQEKKE-VILPRKVVLELAKLLNDSDEPITIEMLQNQVRFTFSNVV 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R SI+S+ + + V+L L++D L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPSGYQKQFDINRLLLLQTLQRASILSNEKFRGVRLILTTDNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +  +A E + + Y+   +DI FN  YLL++++N +S     + +      +NSS
Sbjct: 295 IVCSNSEREEAQEELELQYDGEALDIGFNITYLLDVLNNTTS-----EAIRCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     D         N  YV+MPMRI
Sbjct: 350 ALITIPGND---------NFKYVVMPMRI 369


>gi|311748577|ref|ZP_07722362.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1]
 gi|126577099|gb|EAZ81347.1| DNA polymerase III, beta subunit [Algoriphagus sp. PR1]
          Length = 374

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 187/386 (48%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     ++     +P+  + L +  + +L I AS  +  +   I   
Sbjct: 1   MKFIVSSSALLKQLSAINGVVTTNPVVPILENFLFEIQESVLTITASDLQTSMITEIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I V A +L + ++ L +      F  +     V IS  +  + L     ++FP 
Sbjct: 61  AKEDGNIAVPARILIETLKNLPEQPVT--FSIDHDTYAVEISSDNGRYRLAGENATDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   + ++++ VL + V  T FA +++E+R  + G++ +++  +     VATDGHR
Sbjct: 119 IPTVSNATTVDMSTEVLASAVSNTIFATSSDELRPAMTGVYINLSPTNTTF--VATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    +    +   ++I+PRKA+  +   L S++  V V  ++S  +    S+ M  R
Sbjct: 177 L-VRYRRVDVASSDAANLIIPRKALNLLKSTLPSENVPVSVEFNQSNAYFKFNSIKMICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  FP+Y+NVIP  N   + ++   L  ++ R++I ++     V+L L+  +L ++ +
Sbjct: 236 LIDERFPDYENVIPAENPNLMTIDRQELLSSLKRIAIYANKTTHQVRLKLTGSELLISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E ++  ++   ++I FN K+L+E+++N+S       EV  +  + N +  I
Sbjct: 296 DLDFSNEANERLSCEHDGEDIEIGFNAKFLVEMLNNLSCK-----EVTLKFSAPNRAGLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++D         +   ++MP+ +
Sbjct: 351 LPAEQD------ENEDILMLVMPVML 370


>gi|119509171|ref|ZP_01628322.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414]
 gi|119466337|gb|EAW47223.1| DNA polymerase III subunit beta [Nodularia spumigena CCY9414]
          Length = 387

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 184/401 (45%), Gaps = 32/401 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R +  + T PV  +VLLQA+     + + A    + I  +  
Sbjct: 1   MKLVCTQSDLSTNLSLVSRAVPSRPTHPVLANVLLQADAKTNQVSLTAFDLSLGIRTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQ-------ISFFKENELGTEVNISHGDSNFYLQ 111
           A V   G+I + A LL DI  +L +G         +        G  V ++    ++ ++
Sbjct: 61  AEVLEGGAIALPAKLLVDITSRLPEGEVTLDDESALESETATGEGLIVTLTPKSGHYQVR 120

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
           +    EFP     E     +L ++ L   +  + FA + +E +  L G+   + ++   L
Sbjct: 121 AMSAEEFPELPIIENAEPIQLTTAALIEGLRGSLFATSGDETKQVLTGVHLTVRQD--TL 178

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSS---KDSSVKVSLSES 226
              ATDGHRLAV E      +       + VP +A+ E+ R+L      D ++ + L + 
Sbjct: 179 EFAATDGHRLAVLETTNERPLDNSEQLEVTVPARALRELQRMLGHNAASDQAIALYLDQG 238

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           ++    ++  ++ R +DG++P Y+ +IP   +++L +    L   ++R+++++  +   V
Sbjct: 239 QVVFAWQNQRLTSRTLDGQYPAYRQLIPRQFERQLTIERKQLISTLERIAVLADQKNNIV 298

Query: 287 KLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           K+S++  S ++ ++ +  D+G   ES+    +   ++I FN KYL+E +  + S      
Sbjct: 299 KVSINSASQEITLSCEAQDVGSGRESIPAQISGEDIEIAFNIKYLMEGLKELPSS----- 353

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           E+   L+ + + V                +   Y+ MP+++
Sbjct: 354 EIQMHLNQALTPVIFTP---------LGGLKMTYLAMPVQL 385


>gi|167748044|ref|ZP_02420171.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662]
 gi|167652524|gb|EDR96653.1| hypothetical protein ANACAC_02782 [Anaerostipes caccae DSM 14662]
          Length = 367

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD++  +    + +  K T+P+   +L++A+ G + + A+  E+ I   I  +
Sbjct: 1   MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L ++IVRKL D        E +   +  I+   + F++     SEFP 
Sbjct: 61  ILEQGKIALDAKLFFEIVRKLPDNDV---TIETDSDYKATITCEKACFHIVGQEGSEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  L+   LK ++ +T F+++  E    + G  F +  ED KL  V+ DGHR
Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFEV--EDKKLNVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++  +      ++VP K + EI +I+S   +  V + ++   I    +   +  
Sbjct: 176 ISIRNIELK-ESYDSFKVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RL++GE+     ++    + ++ +N       +DR S++      + + ++++ + L ++
Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +   G   E++ +      + I FN K+L++++  I      D+E+   L +  +  F
Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVLRVID-----DEEINIYLVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+  +  Y+++P+
Sbjct: 349 I----------KDDSESYIYLILPV 363


>gi|153854254|ref|ZP_01995553.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814]
 gi|149753029|gb|EDM62960.1| hypothetical protein DORLON_01547 [Dorea longicatena DSM 13814]
          Length = 452

 Score =  306 bits (783), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 189/385 (49%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 84  MKITCSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEISGD 143

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        +N    +  I+   + F +   P  EF  
Sbjct: 144 IIDRGMIAIDAKIFSEIVRKLPDNEVTIETLDN---LQTVITCEKAKFDIAGKPGDEFAY 200

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S E++   LK ++ +T F+++  E    + G  F I++  LK+  V+ DGHR
Sbjct: 201 LPIIEKEDSIEVSQFTLKEVIRQTIFSISDSESNKLMTGELFDISDNILKV--VSLDGHR 258

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +   +A    ++VP K + EI +ILS + ++ V +S +++ I    ++  +  
Sbjct: 259 ISIRKVPLKKSVADR-KLVVPGKTLIEISKILSGEAENVVSISYTKNHIVFEFDNTIVVS 317

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++R+N   L   +DR +++      + + +++  + + + 
Sbjct: 318 RLIEGEYFRIDQMLSNDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMELK 377

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +      + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 378 IKSQ-IGSMNEEIMITKEGKDLLIGFNPKFLIDALRVID-----DEEVTIYLMNAKAPCF 431

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ +  Y+++P+
Sbjct: 432 I----------KDDEESYIYLILPV 446


>gi|153952672|ref|YP_001393437.1| DNA polymerase III subunit beta [Clostridium kluyveri DSM 555]
 gi|219853345|ref|YP_002470467.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016]
 gi|146345553|gb|EDK32089.1| DnaN [Clostridium kluyveri DSM 555]
 gi|219567069|dbj|BAH05053.1| DNA polymerase III beta chain [Clostridium kluyveri NBRC 12016]
          Length = 367

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 180/386 (46%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++ + E +    + I  K+++PV   +LL+A +  + +  S  ++ I   I A 
Sbjct: 1   MKFLCTKNKLQESIFTVQKAITGKSSMPVLNGILLEAYNDTIRLTGSDIDLSIITTIQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI + + +  DI+RKL +        EN     V I    S F +      +FP 
Sbjct: 61  VQEEGSIVIDSRIFGDIIRKLPNDNIYISTTEN---NSVEILCQKSKFNIIHMNAEDFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  + LKN+++ T FA A +E R  L GI F I  +  KL  VA DG+R
Sbjct: 118 IPNINENIFFSIPQNTLKNMIKSTIFATAQDEARPILTGILFEIKNK--KLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +  +   + + ++P K + E+ +IL   + +V ++ + + I  N+ +  +  R
Sbjct: 176 LALKSEFLDNE--NVINAVIPGKTLNEVSKILDDDNENVNITFTPNHILFNLINTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMTV 299
           L+ GEF  Y ++IP   +  +    + L   ++R S+M+       +KL +  + + +T 
Sbjct: 234 LLQGEFIKYNSIIPEEYNLRVTAKKSELLDCIERASLMAKDSNTNLIKLKIEQNNMIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E +N+      + I FN KYL++++  +      D+E+V     S S   I
Sbjct: 294 -NSQIGMVREELNILLEGDTLQIAFNSKYLIDVLRIME-----DEEIVMEFSGSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +            K N  Y+++P+R+
Sbjct: 348 KN---------SKKNNCIYLVLPVRL 364


>gi|167766863|ref|ZP_02438916.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1]
 gi|317499295|ref|ZP_07957568.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
 gi|167711411|gb|EDS21990.1| hypothetical protein CLOSS21_01380 [Clostridium sp. SS2/1]
 gi|291558403|emb|CBL37203.1| DNA polymerase III, beta subunit [butyrate-producing bacterium
           SSC/2]
 gi|316893464|gb|EFV15673.1| DNA polymerase III [Lachnospiraceae bacterium 5_1_63FAA]
          Length = 367

 Score =  305 bits (782), Expect = 6e-81,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 179/385 (46%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD++  +    + +    T+P+   +L++A+ G +++ A+  E+ I   I   
Sbjct: 1   MKIICTKSDLVHAVSIVSKAVSNNTTLPILKCILIEASTGNIKLTANDMELGIETTIDGQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +IVRKL D        E +   +  I+   + F +      EFPS
Sbjct: 61  IHQPGKIAIEAKLFSEIVRKLPDNDI---TIETDDQYKATITCEKACFQIMGQEGEEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  L+   LK ++ +T F+++  E    + G  F + ++  +L  V+ DGHR
Sbjct: 118 LPEIEKNQSITLSQFSLKEVIRQTIFSISDNENTKLMTGELFEVKDD--QLSVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + EI++I+S + D +V + ++   I    ++  +  
Sbjct: 176 ISIRHIELK-DHYDPFKVVVPGKTLQEIVKIISGEMDENVSIYVTSKHILFEFDNTRVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RL++GE+     ++    + ++ +N       +DR S++      + + + ++   L + 
Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLNCIDRASLLIRESDKKPIIIDIADHSLKLN 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N   G   E + +      + I FN K+L++++  I      D+E+   L +  +  +
Sbjct: 295 I-NSFFGSMEEEILIQKEGRDLLIGFNPKFLMDVLRVID-----DEEINIYLVNPKAPCY 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+     Y+++P+
Sbjct: 349 I----------KDDAGTYNYLILPV 363


>gi|71891808|ref|YP_277537.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
 gi|71795914|gb|AAZ40665.1| DNA polymerase III, beta-subunit [Candidatus Blochmannia
           pennsylvanicus str. BPEN]
          Length = 367

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 116/386 (30%), Positives = 204/386 (52%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R  + + L     I+  +  +P+  HVLL+ ND  L I A+  EIEIT  +   
Sbjct: 1   MNFVIDRKLLYQSLQKVVGILSGRPRMPILTHVLLEVNDNCLCITATDLEIEITVRVILQ 60

Query: 61  VDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GS+ V     ++I R L + ++IS   +++   ++ I  G S FYL +F   +FP
Sbjct: 61  DKYPIGSVIVPGRKFFEICRSLSESSKISIVSKDK---KMIICSGCSKFYLSTFSSLDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             ++        ++ ++LK ++E T F+M  +++RY LNGI F   E  L++  VATDGH
Sbjct: 118 KLEKWGNNLKLVISQAILKKMIELTQFSMGHQDVRYCLNGILFETKEHILRI--VATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  E+ +   +    S I+PRK V EILR+L+ K+  V +  + + + +  E+ + + 
Sbjct: 176 RLASCEITMDLLLPNQSS-IIPRKGVIEILRLLNVKEKLVNIQTNSNNLRMETENYTFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LID  FPN  +V    +   L V C  L+QA+ R +I+++ +++ V+ +L +++L +T 
Sbjct: 235 KLIDAVFPNCHDVFIKRSKNVLEVECGILKQALKRAAILANEKLRIVRFTLITNQLKITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +   + E ++V Y+   + I FN  YL++++  + +       + F L    SSV I
Sbjct: 295 HNFEHEASEEILDVLYSGKSIKISFNVDYLIDVLQVMDTQ-----FLRFYLTDEISSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +K           A Y++MP+RI
Sbjct: 350 ESTEK--------CHGATYIVMPIRI 367


>gi|289705897|ref|ZP_06502276.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58]
 gi|289557382|gb|EFD50694.1| DNA polymerase III, beta subunit [Micrococcus luteus SK58]
          Length = 371

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 171/387 (44%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + + +  A R +  +  +PV   +L+ A  G++ I +   E      I A 
Sbjct: 1   MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + VS  LL DIVR L   AQ++   +   G +V ++   S F L + P  ++P+
Sbjct: 61  VETAGQVLVSGRLLNDIVRSLP-QAQVTVELD---GGKVLVTCRSSRFALATMPVGDYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        +  +   + V +   A + ++    L  +   I  +   +  +ATD +R
Sbjct: 117 LPELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGD--TMTFLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           LA+ E+        +  S+++  + + E+ + L S  D  + +  +   +         +
Sbjct: 174 LAMKEIRWTPADPSLSTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             L+DGE+P  +++ P S+  +  V+   L +A  RV++++  R  A+++  +  ++ + 
Sbjct: 234 SVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTDGQVTLD 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D   A ES+        + + FN  YL E +  +        +V F   S+     
Sbjct: 293 AGTGDDASANESVPCTLEGEDITVAFNPSYLSEGLAVVD-----QPQVRFAFTSAPKPAL 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + G +++     D      Y++MP+RI
Sbjct: 348 LTGVNQEDGVVSD----YRYLVMPVRI 370


>gi|227891670|ref|ZP_04009475.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC
           11741]
 gi|227866473|gb|EEJ73894.1| DNA polymerase III, beta chain [Lactobacillus salivarius ATCC
           11741]
          Length = 379

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK +++R+  ++ L    R I  K TI +   + +  +   L +  S  +I I   I   
Sbjct: 1   MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G++ + A    +IV+KL +    +   E     +  I+ G + F +   
Sbjct: 61  DDNAALQIEQEGAVVLPARFFSEIVKKLPEQ---TMTIEINERFQATITSGSAEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P   E +      +   +LK ++ +T  A++ +E R  L GI   I   + +L A
Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIK--NGELLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + 
Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           + S   RL++G++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL+++ 
Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++G   E ++        ++I FN  Y+ + + +         E+   
Sbjct: 296 SAQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQS-----EITIA 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                    I   +         K N   ++ P+R
Sbjct: 351 FTQPLRPFTIVPTED--------KDNFVQLITPVR 377


>gi|332293550|ref|YP_004432159.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5]
 gi|332171636|gb|AEE20891.1| DNA polymerase III, beta subunit [Krokinobacter diaphorus 4H-3-7-5]
          Length = 372

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 176/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L + +   L + AS  E  +T  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELDGNTLTVSASDLETTMTSKLDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I + A LL D ++   +        EN     V IS     + L     +EFP+
Sbjct: 61  SSDNGAIALPARLLLDTLKTFPEQPLTFTQHEN---NTVEISSNHGKYALAYADGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     ++  SVL   +  T FA   +++R  ++G+FF    + L    VATD H+
Sbjct: 118 AVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFGTDGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L           ++    I+P+K +  +  ILS+ D  + V  +ES    + +++ +  R
Sbjct: 176 LVKYGRT-DVVASQAAEFIMPKKPLNLLKGILSTSDDEIAVEYNESNAKFSFDNVELVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N   L ++      +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N+++++     V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNAND-----VSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPVD-----GLDEGEQVTMLVMPVML 370


>gi|257067225|ref|YP_003153480.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810]
 gi|256558043|gb|ACU83890.1| DNA polymerase III, beta subunit [Brachybacterium faecium DSM 4810]
          Length = 374

 Score =  305 bits (782), Expect = 7e-81,   Method: Composition-based stats.
 Identities = 88/391 (22%), Positives = 168/391 (42%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  ++R  + + +  A R +  +  +P+   V + A+  G L++     E+     + A
Sbjct: 1   MKFHLDRGVLGDAVSWATRTLPVRPAMPILQGVRIVADAGGELQLSTFDYEVSAQIRLEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G + V   +L DIVR L +       +    GT++ +  G + F L + P  E+P
Sbjct: 61  EVDQPGEVLVQGRMLSDIVRALPNKDVSVALE----GTKLQVRCGSARFALATLPVEEYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                  V     A+ V    + +   A + ++    L G+   I+ E + L  +ATD +
Sbjct: 117 QLPTMPPVAGAV-AADVFSEAIAQVTVAASKDDTLPLLTGVKVEISGETMTL--MATDRY 173

Query: 180 RLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           RLA+ E+           + +V  + + E+ R L++    V+++LSE      I      
Sbjct: 174 RLALRELTWNPTTPGTELTALVRGRTLHEVARSLATGGG-VEIALSEDDSATLIGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L+DGE+P  + + P ++     V   +L  AV RVS+++  R   V+LS +  +
Sbjct: 233 RRTTSTLVDGEYPPVRRLFPDTSAITAVVATASLIDAVKRVSLVA-ERNTPVRLSFTEGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E +  +     + + FN  +LL+ +  + +     +        S 
Sbjct: 292 VALEAGAGDDAQASEVLEAHLEGEDLVVGFNSGFLLDGLGALGT-----EFARLTFTDSI 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + G+D           +  Y++MPMRI
Sbjct: 347 KPSVMTGQDSLEGAP---DSSYKYLIMPMRI 374


>gi|297543500|ref|YP_003675802.1| DNA polymerase III subunit beta [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
 gi|296841275|gb|ADH59791.1| DNA polymerase III, beta subunit [Thermoanaerobacter mathranii
           subsp. mathranii str. A3]
          Length = 370

 Score =  305 bits (782), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 189/389 (48%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A    ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKITALKDQVKFSGTDLDIGIECQIPAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V A +  ++VRKL +        E++    VN+     NF +      EFP 
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEEDV---KIESDSQNTVNVICDSINFTIAGSDAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     SF+L  ++LK+L+++T F +A E+ R  L G+ F +   ++K  AVA DG R
Sbjct: 118 IPQVSKENSFKLTKNILKDLIKKTVFCIAHEQTRPILTGVLFEVFPNEIK--AVALDGFR 175

Query: 181 LAVAEVDIV----AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           +  +  SI++P K + EI +IL  +++ + +  + +++   IE+  
Sbjct: 176 MAIYTYQSEEKFFEEGIEKYSIVIPGKTLEEIYKILEDEETEIDIYHTANQVLFQIENTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +    + 
Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N + GK +E + V      ++I FN +YLL+ +  I      ++E+     +S + 
Sbjct: 296 VSS-NSEKGKMVEKIEVNVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+              +  Y+++P+++
Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369


>gi|257413824|ref|ZP_04744342.2| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82]
 gi|257202157|gb|EEV00442.1| DNA polymerase III, beta subunit [Roseburia intestinalis L1-82]
          Length = 388

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++L  +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I   
Sbjct: 19  MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 78

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        E +   +  I+   + F +      +F  
Sbjct: 79  IAERGVIALDAKIFSEIVRKLPDSDV---TIETDASFKTTITCEKAKFNIVGKSGDDFSY 135

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F I E DLK+  V+ DGHR
Sbjct: 136 IPYIERNEPIVMSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGHR 193

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++    +    ++VP K + E+ +IL    +  V + L+++ I    E+ ++  
Sbjct: 194 ISIRNIELKNNYS-HKKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVVS 252

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++    + ++++N   L   +DR +++      + + ++++   + + 
Sbjct: 253 RLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMELK 312

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++      + I FN K+ ++ +  I      ++EV   + +  +  F
Sbjct: 313 I-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVID-----EEEVTLYMVNPKAPCF 366

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++    Y+++P+
Sbjct: 367 I----------KDDEGTFIYLILPV 381


>gi|301300475|ref|ZP_07206674.1| DNA polymerase III, beta subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
 gi|300851922|gb|EFK79607.1| DNA polymerase III, beta subunit [Lactobacillus salivarius
           ACS-116-V-Col5a]
          Length = 379

 Score =  305 bits (781), Expect = 8e-81,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK +++R+  ++ L    R I  K TI +   + +  +   L +  S  +I I   I   
Sbjct: 1   MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G++ + A    +IV+KL +    +   E     +  I+ G + F +   
Sbjct: 61  DDNAALQIEQEGAVVLPARFFSEIVKKLPEQ---TMTIEINERFQATITSGSAEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P   E +      +   +LK ++ +T  A++ +E R  L GI   I   + +L A
Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIK--NGELLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + 
Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           + S   RL++G++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL+++ 
Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++G   E ++        ++I FN  Y+ + + +         E+   
Sbjct: 296 SVQSVVLSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQS-----EITIA 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                    I   +         K N   ++ P+R
Sbjct: 351 FTQPLRPFTIVPTED--------KDNFVQLITPVR 377


>gi|227508129|ref|ZP_03938178.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
 gi|227192358|gb|EEI72425.1| DNA-directed DNA polymerase [Lactobacillus brevis subsp.
           gravesensis ATCC 27305]
          Length = 379

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 178/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R++  + L    R I  K TIP+   + LQA    L +  S  +I I   I   
Sbjct: 1   MKFTISRTEFTKALNTVSRAISTKTTIPILTGLKLQATQTGLILTGSDADISIETTIKTD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    DIV+KL +        EN    +  I+ G S+F +   
Sbjct: 61  NPDNLLAIESEGAIVLPARFFTDIVKKLPEETLTIEVGEN---FQTMITSGPSSFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   S  LA  +LK ++ +T  A++ +E R  L G+ F ++  D    A
Sbjct: 118 DANNYPHLPEIETTNSIPLAGDLLKQIISQTVIAVSNQESRPILTGVHFILS--DTNFLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +V +   I      ++P K++ E+ R++      + +S++E++    I 
Sbjct: 176 VATDSHRLSQRKVILETPINGSFDFVIPGKSLVELSRMIDDNKEDIILSVTENQALFTIG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
                 RL++G +P+   +IP S+D  +  +   L  +++R S++S + R   VK+++  
Sbjct: 236 DTLFYSRLLEGNYPDTSRLIPDSHDTRISFDAPELLASIERASLLSHASRNNVVKITVKP 295

Query: 293 D--KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +   + +  ++PD+G   E M         ++I FN  Y+ + + + S   +  D     
Sbjct: 296 ETKTVTIYGNSPDVGNVEEDMEPRSVEGNELEISFNPDYMKDALRSFSQSTINLD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             SS     +   +           +   ++ P+R
Sbjct: 351 FTSSLRPFTLTPTED--------SDSFVQLITPIR 377


>gi|326789141|ref|YP_004306962.1| DNA polymerase III subunit beta [Clostridium lentocellum DSM 5427]
 gi|326539905|gb|ADZ81764.1| DNA polymerase III, beta subunit [Clostridium lentocellum DSM 5427]
          Length = 368

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 184/387 (47%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   +  +L  +    +    K T+P+   +LL+A++  L +  +  E+ I   I A 
Sbjct: 1   MHIYCRQDLLLNSINTVLKACSTKTTMPILECILLKASNNKLTLVGNNLELGIESTIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + + +  +I+R++          +N + +   I    S F +      +FP+
Sbjct: 61  VINEGYIALESKIFSEIIRRMPGEVVEISTDDNFMTS---IISEKSKFQIAGQSGKDFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      +    LK ++ +T F++A +E R  L G    I   +L +  V+ DG+R
Sbjct: 118 LPDVEKANICTVNQLALKEMIRQTIFSVAQDETRPILTGEMLQIKNNNLNM--VSVDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           ++  ++ +  +  ++  +++P + + EI +IL+S++   V V   +  +  ++    +  
Sbjct: 176 ISYRQLQLSNENGEIE-VVIPGRTLSEINKILTSEEKEDVTVYFGDKHVLFDLGDSKVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RL++GEF  Y+ V     + ++ V+  N   +++R +++S   +   +++ ++ +K+ +T
Sbjct: 235 RLLEGEFLKYEQVFSPDYETKILVDRKNFLMSIERAALISREGKKNPIRVEINGEKMIIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E ++V      + I FN KYL++ +  I      DD V     SS +   
Sbjct: 295 S-NAELGTAREELDVILEGKEITIAFNPKYLIDALKAID-----DDNVCIHFISSLTPCI 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ ++ +         +  Y+++P+R+
Sbjct: 349 IQPEEGE---------HYKYLILPIRV 366


>gi|317472419|ref|ZP_07931744.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
 gi|316900139|gb|EFV22128.1| DNA polymerase III [Anaerostipes sp. 3_2_56FAA]
          Length = 367

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 183/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD++  +    + +  K T+P+   +L++A+ G + + A+  E+ I   I  +
Sbjct: 1   MKIVCNKSDLVSGVSIVSKAVSNKTTLPILECILMEASAGTITLTANDMELGIETNIEGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L ++IVRKL D        E +   +  I+   + F++     SEFP 
Sbjct: 61  ILEQGKIALDAKLFFEIVRKLPDNDV---TIETDSDYKATITCEKACFHIVGQEGSEFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   S  L+   LK ++ +T F+++  E    + G  F    ED KL  V+ DGHR
Sbjct: 118 LPEIEKEKSITLSQFTLKEVIRQTIFSISDNENNKLMTGELFE--AEDKKLNVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++  +      ++VP K + EI +I+S   +  V + ++   I    +   +  
Sbjct: 176 ISIRNIELK-ESYDSFKVVVPGKTLQEITKIISGDAEKDVIIYVTNKHILFEFDQTRVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RL++GE+     ++    + ++ +N       +DR S++      + + ++++ + L ++
Sbjct: 235 RLLEGEYYKISQMLSSDYETKITINKKEFLDCIDRASLLIRESDKKPIVINITDNSLELS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +   G   E++ +      + I FN K+L++++  I      D+E+   L +  +  F
Sbjct: 295 ISSF-FGSMEENILIQKEGRDILIGFNPKFLMDVLRVID-----DEEINIYLVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+  +  Y+++P+
Sbjct: 349 I----------KDDSESYIYLILPV 363


>gi|300088050|ref|YP_003758572.1| DNA polymerase III subunit beta [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299527783|gb|ADJ26251.1| DNA polymerase III, beta subunit [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
          Length = 376

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 179/391 (45%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++  + ++ + L    R    ++T+P++ +VLL  ++G L++ A+  E+ +T  + A 
Sbjct: 1   MRLSCLQENLAKGLNIVGRAAAARSTLPITTNVLLATDEGRLKLSATNLEMAVTCWLGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS TV A L+ + +  L           N+    + +  G     +      +FP 
Sbjct: 61  VEEEGSTTVPAKLMTEFIGSLPPEKVDMTLSGNKT---LTLKCGRFEARMTGVDAKDFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   + ++  +  K  V R  FA AT+E R  L GI    +   L L   A DG R
Sbjct: 118 VPRVENGVNAKVDVAEFKKGVARVVFAAATDESRPVLTGIDAEFDGSVLTL--AAADGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMS 238
           LAV ++ +   +++    I+P K +GE+ R+++  D S+ +++   +S+I   ++++ + 
Sbjct: 176 LAVYKMTLSEPVSQKVKAIIPAKTLGEVSRLITDADESIGITVDTQKSQILFKLKNIELV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK---- 294
            +L+ G FP Y  +IP S+   + ++     +A     I +      V+L ++       
Sbjct: 236 SQLLQGTFPQYSQIIPQSHSTRVVLDVAQFLRASRAAQIFARDGGGIVRLIMTPGSGKTP 295

Query: 295 --LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L +T  + ++G     ++   +     I FN KYLL+++  +      +D+V   +  
Sbjct: 296 GRLSITARSEEIGDDQAELDAAISGDEAKIAFNGKYLLDVLSVL-----TEDQVALEVTG 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +S   +R    D         N  YV+MPM
Sbjct: 351 PSSPGVLRPVGSD---------NYIYVVMPM 372


>gi|172039682|ref|YP_001799396.1| DNA polymerase III subunit beta [Corynebacterium urealyticum DSM
           7109]
 gi|171850986|emb|CAQ03962.1| DNA polymerase III, beta subunit [Corynebacterium urealyticum DSM
           7109]
          Length = 394

 Score =  305 bits (781), Expect = 9e-81,   Method: Composition-based stats.
 Identities = 87/398 (21%), Positives = 170/398 (42%), Gaps = 28/398 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
            +V + D    L    R +  K T P+   V++ A+D  LE+     E+     + A+VD
Sbjct: 8   FSVAKDDFASALAWVARALPTKPTQPILRGVMILADDDGLELSGFDREVSTRVRVNANVD 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L  DIV  L  G +I+       G+ V +    S F L +    ++P   
Sbjct: 68  EPGRILVAGKLASDIVGALP-GKEITMEY---SGSTVLVRSSSSRFELPAMTIEDYPVLP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +     +  +  ++    + +   A   ++    L GI   I  E++ L   ATD  RLA
Sbjct: 124 DMP-AVTGTIDPNLFTEAISQVAIAAGKDDTLPMLTGIRMEIEGENVVL--AATDRFRLA 180

Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           V         A     +++P + + +  R L    +  +++++        +  + +  +
Sbjct: 181 VRSFQWNPASADAKAELLIPARTLADTARTLDHSLNDPIEIAIGSGEDIGADGLLGIVTD 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + RL+D +FP ++ ++P  ++    V    L  A+ RVS+++  R   +++     
Sbjct: 241 ARRTTTRLLDADFPKFRPLLPARHNAMASVEIAPLLDAIRRVSLVA-ERNSQIRMHFEES 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++    D+G+A E +N  Y+  P+ I FN  YL + +  I +     + VVF     
Sbjct: 300 TLTLSAGGSDVGQAEEVLNCAYHGEPLTIAFNPAYLKDGLSAIHT-----ERVVFGFTQP 354

Query: 354 NSSVFIR------GKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    +        + ++     D + N  Y+LMP+R+
Sbjct: 355 SRPAILIPAPAELPEAEEDGTFPDPETNFKYLLMPVRL 392



 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 28/184 (15%), Positives = 71/184 (38%), Gaps = 16/184 (8%)

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
           E+   SF +A     + +     A+ T+  +  L G+    +++ L+L        R   
Sbjct: 2   EQENVSFSVAKDDFASALAWVARALPTKPTQPILRGVMILADDDGLELSGFD----REVS 57

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LI 242
             V + A + +   I+V  K   +I+  L  K+  + +  S S + +   S    +  + 
Sbjct: 58  TRVRVNANVDEPGRILVAGKLASDIVGALPGKE--ITMEYSGSTVLVRSSSSRFELPAMT 115

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCM 297
             ++P    V+P        ++     +A+ +V+I +           +++ +  + + +
Sbjct: 116 IEDYP----VLPDMPAVTGTIDPNLFTEAISQVAIAAGKDDTLPMLTGIRMEIEGENVVL 171

Query: 298 TVDN 301
              +
Sbjct: 172 AATD 175


>gi|86130089|ref|ZP_01048689.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134]
 gi|85818764|gb|EAQ39923.1| DNA polymerase III, beta subunit [Dokdonia donghaensis MED134]
          Length = 372

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 175/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L + AS  E  +T  +   
Sbjct: 1   MKFIVSSSYLLKQLQVLGGVINNSNTLPILDNFLFELDGNALTVSASDLETTMTSKLDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I + A LL D ++   +        EN     + IS     + L     +EFP+
Sbjct: 61  SSDNGAIALPARLLLDTLKTFPEQPLTFTQHEN---NTIEISSNHGKYALAYADGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     ++  SVL   +  T FA   +++R  ++G+FF    + L    VATD H+
Sbjct: 118 AVSLEDPSVVKIPGSVLATAISNTIFATGNDDLRPVMSGVFFQFATDGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L           ++    I+P+K +  +  ILS+ D  + V  +ES      +++ +  R
Sbjct: 176 LVKYGRT-DVVASQAAEFIMPKKPLNLLKGILSTSDDEISVEYNESNAKFTFDNVELVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N   L ++      +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNRLTIDRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N+++++     V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNMNAND-----VSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPVD-----GLDEGEQVTMLVMPVML 370


>gi|332521540|ref|ZP_08397994.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4]
 gi|332042939|gb|EGI79138.1| DNA polymerase III, beta subunit [Lacinutrix algicola 5H-3-7-4]
          Length = 372

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 181/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L   ++  L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDIDNNALTVSASDLETTMSSTLDIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS+ + A LL D ++   +       +EN     V IS     + L     +EFP 
Sbjct: 61  SDSKGSVAIPARLLLDTLKTFPEQPLTFTVEEN---NTVEISSNHGKYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  ++  +L   + +T FA   +++R  ++G+FF  + ++L    VATD H+
Sbjct: 118 AVSLEDPSATTISGDILATAISKTIFAAGNDDLRPVMSGVFFQFSTDNLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     +     +++   I+P+K +  +  ILSS D  V +  ++S      E+  +  R
Sbjct: 176 LVKYTRE-DVSASQVAEFIMPKKPLTLLKGILSSSDQDVTIEYNDSNAKFTFENTILICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++ T    +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSIDRTQFLNSVKRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N+++ +     V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLNATD-----VQLEMSMPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPID-----GLDEGEYVTMLVMPVML 370


>gi|332709092|ref|ZP_08429061.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L]
 gi|332352143|gb|EGJ31714.1| DNA polymerase III, beta subunit [Lyngbya majuscula 3L]
          Length = 393

 Score =  305 bits (781), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 95/407 (23%), Positives = 190/407 (46%), Gaps = 38/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK+   +SD+   L    R++  + T PV  +VLL+A+  +  + + A    + I  +  
Sbjct: 1   MKLVCSQSDLNTNLSLVSRVVPSRPTHPVLGNVLLEADQKNQRVLLTAFDLSVGIQTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK---ENELGTEVNISHGDSNFYLQSFPE 115
           A V+  G IT+ A LL DIV +L  G           +     V ++     + ++    
Sbjct: 61  ADVETGGEITLPAKLLNDIVSRLPSGEITLEDDGTGTDSDSLIVTLTSATGRYQVRGMSS 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP   E     +  +   VLK  ++ + FA +++E +  L G+   +  +  KL   A
Sbjct: 121 EEFPELPEVNTSVAVHIPVEVLKAGLQGSLFATSSDETKQVLTGVHLTVQSD--KLEFAA 178

Query: 176 TDGHRLAVAEVDIVAQIAKMPS-------------IIVPRKAVGEILRILSSKDSS--VK 220
           TDGHRLAV E +   + +                   +P +A+ E+ RI+S  ++   + 
Sbjct: 179 TDGHRLAVVETNRTIEESATTEATQELDDHDFPLEFTLPARALRELERIVSKAEAQDIIA 238

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           +     +I        ++ R ++G++P+Y  ++P   +++L ++   L  AV+R+++++ 
Sbjct: 239 IQFEPGQIVCQGGEQLLTSRTLEGQYPSYHQLLPKHFERQLILDRRQLLSAVERIAVLAD 298

Query: 281 VRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
            +   VK ++   + +L ++V+  D+G   ESM V  +   ++I FN KYL++ +  +S+
Sbjct: 299 QKNNIVKFNIDSVNQRLHLSVEAKDLGSGRESMEVEISGDSLEIAFNVKYLIDGLKALST 358

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +++ +NS V                +   Y++MP++I
Sbjct: 359 S-----EIKMQMNEANSPVIFMP---------LGGLKMTYLIMPVQI 391


>gi|328956384|ref|YP_004373770.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4]
 gi|328672708|gb|AEB28754.1| DNA polymerase III, subunit beta [Carnobacterium sp. 17-4]
          Length = 380

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 190/396 (47%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++RS  L+ L    R I  + TIP+   + + AND  L +  S  +I I   IP S
Sbjct: 1   MKFTIKRSAFLKSLSDVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I + A    +IV+KL +    +   E     +  I+   ++F +   
Sbjct: 61  EDDNLLVIEKTGGIVLQARFFSEIVKKLPEE---TMTIEILDHFQALITSATASFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P     +   SF L  ++ K ++ +T  A++T E R  L G+   I  E+ K  A
Sbjct: 118 DPNNYPHLPIIDTKESFTLPVNLFKQVIGQTVIAISTHESRPILTGVNIVI--ENGKFLA 175

Query: 174 VATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRL+   + +     Q +K  +II+P K++ E+ R L     ++++ ++E+++  
Sbjct: 176 VATDSHRLSQRVIPLEMNDEQASKKYNIIIPGKSLIELSRTLDENSDTIEMMITENQVLF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
             E++    RL++G +P+ + +IP ++  E+  N ++L  +++R S++S   +   VK++
Sbjct: 236 KSENMYFYSRLLEGYYPDTKRLIPDNSSTEISFNASSLLGSIERASLLSHEGKNNVVKIT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++ + + ++ ++PD+G   E ++       P+++ FN  Y+ + +      +     +  
Sbjct: 296 INPNLVEISGNSPDVGNVNEELDYQSVEGEPIELSFNPDYMKDALRTFGQTD-----IKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  S      +   + D         +   ++ P+R
Sbjct: 351 KFTSPVRPFILVPSENDQ--------DFIQLITPVR 378


>gi|90960992|ref|YP_534908.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118]
 gi|90820186|gb|ABD98825.1| DNA polymerase III, beta chain [Lactobacillus salivarius UCC118]
          Length = 379

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 179/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK +++R+  ++ L    R I  K TI +   + +  +   L +  S  +I I   I   
Sbjct: 1   MKFSIQRASFIKYLNDVQRAISSKTTIDILTGLKMDLSKDALTLTGSNSDISIETIISIA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G++ + A    +IV+KL +    +   E     +  I+ G + F +   
Sbjct: 61  DDNAALQIEQEGAVVLPARFFSEIVKKLPEQ---TMTIEINERFQATITSGSAEFTINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              E+P   E +      +   +LK ++ +T  A++ +E R  L GI   I   + +L A
Sbjct: 118 NAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIK--NGELLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +      +  +I+P K++ E+ +++S  D ++++ +SE++    + 
Sbjct: 176 VATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           + S   RL++G++P+ + +IP  ++  +  N   L Q+++R S++S   R   VKL+++ 
Sbjct: 236 NTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++ + P++G   E ++        ++I FN  Y+ + + +         E+   
Sbjct: 296 SAQSVILSGNTPEVGNVEEELHFKNLEGSELEISFNPDYMKDALRSFGQS-----EITIA 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                    I   +         K N   ++ P+R
Sbjct: 351 FTQPLRPFTIVPTED--------KDNFVQLITPVR 377


>gi|309811337|ref|ZP_07705124.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185]
 gi|308434644|gb|EFP58489.1| DNA polymerase III, beta subunit [Dermacoccus sp. Ellin185]
          Length = 378

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 171/389 (43%), Gaps = 23/389 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VER  + E +  A R + ++  +PV   VLL+A+   L + A   E+     + A V
Sbjct: 4   KLRVERDVLAEAVAWAVRGLSQRPPVPVLAGVLLEASPEGLTLSAFDYEVSAKVTVDADV 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G++ V   LL DI + L     I    E   G++V ++ G + F LQS P  E+P+ 
Sbjct: 64  EEAGTVLVLGRLLADITKSLP-HKPIELISE---GSKVQVTCGSAKFSLQSMPTGEYPTL 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  +A  V    V +   A    +    L G+   ++    KL  +ATD +RL
Sbjct: 120 PANPDP-TGVIAGDVFTQAVAQVSVAADRGDTLPILTGVRVEVSGN--KLTLLATDRYRL 176

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESL 235
           A+ EV   A       + +VP + +  + + L +   +V +SLS                
Sbjct: 177 AMREVMWNAGDEGAEYAALVPARTLDSLAKSLGAA-GNVSLSLSGASTGSGLAGFEAGQR 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            M+ RL+DG++P   ++ P S D    V    L +A  RVS+++  R   V+L  + D +
Sbjct: 236 RMTTRLLDGDYPKVTSLFPTSVDTTAIVETAQLAEACKRVSLVA-ERNMPVRLRFAEDSV 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     +  +A E+     +   ++I F+ ++LL+ +  + +       V         
Sbjct: 295 RIEAGTGEDAQASETFEAKIDGPELEIAFSPQFLLDGLGVVGTKY-----VRLGFTQPTR 349

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + G+D+    + D   +  Y++MP+R
Sbjct: 350 PAVLSGQDE---IDGDADDSYRYLIMPVR 375


>gi|257866277|ref|ZP_05645930.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30]
 gi|257873207|ref|ZP_05652860.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10]
 gi|257875894|ref|ZP_05655547.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20]
 gi|325567640|ref|ZP_08144307.1| DNA-directed DNA polymerase III beta subunit [Enterococcus
           casseliflavus ATCC 12755]
 gi|257800235|gb|EEV29263.1| DNA polymerase subunit III [Enterococcus casseliflavus EC30]
 gi|257807371|gb|EEV36193.1| DNA polymerase subunit III [Enterococcus casseliflavus EC10]
 gi|257810060|gb|EEV38880.1| DNA polymerase subunit III [Enterococcus casseliflavus EC20]
 gi|325159073|gb|EGC71219.1| DNA-directed DNA polymerase III beta subunit [Enterococcus
           casseliflavus ATCC 12755]
          Length = 376

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 97/393 (24%), Positives = 191/393 (48%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ R++ ++ L    R I  K TIP+   V L  ++  L +  S  +I I   +   
Sbjct: 1   MKLTLNRTEFMQELQTVQRAISTKTTIPILTGVKLSLSEKGLTMTGSNADISIETFLSVE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +IVR+L +        +N    +V I+ G +NF +   
Sbjct: 61  NEKAQMQIEKTGAIVLQARFFSEIVRRLPESTLTLEVLDN---NQVAITSGKANFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E   S E+ + VL  +V  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADSYPHLPVVESQDSIEIPAHVLNKVVSETVFAVSQHESRPILTGVHFVL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + +      +I++P K++ E+ R L+ ++ ++++S+ ++++    +
Sbjct: 176 VATDSHRLSQRVIPLESG-ETAFNIVIPGKSLTELSRSLTDEEEAIQISIMDNQVLFQTK 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +   L QA++R S++S   R   V+L++S 
Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPSSFNTEIEFSVPELLQAIERASLLSHEGRNNIVRLAISE 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + + +  ++P++GK  E ++       P++I FN  Y+   +         D  +V R  
Sbjct: 295 EAVVLYGNSPEIGKVEEDLSFEKVTGDPLEISFNPDYMKAALRAFG-----DTSIVIRFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+     +   +         K +   ++ P+R
Sbjct: 350 SAIRPFTLEPTES--------KGSFIQLITPVR 374


>gi|305666627|ref|YP_003862914.1| DNA polymerase III subunit beta [Maribacter sp. HTCC2170]
 gi|88708898|gb|EAR01133.1| DNA polymerase III, beta chain [Maribacter sp. HTCC2170]
          Length = 372

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 178/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L       L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNKLTVSASDLETTMSSVLDVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I V A LL + ++   +       ++N     V IS     + L     +EFP 
Sbjct: 61  SDNEGTIAVPAKLLLETLKTFPEQPLTFVVEDN---NTVEISSNHGKYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S  +   +L   + +T FA   +++R  ++G+FF  + E+L    VATD H+
Sbjct: 118 AVELANPSSTNIMGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   +       +++   I+P+K +  +  IL+  +S V +  ++S      ++  +  R
Sbjct: 176 LVKYQRS-DVTASQVAEFIMPKKPLNLLKGILAGSESEVAIEYNDSNAKFTFDNAELICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +       +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSIARNQFLSSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N++S     DEV   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCSYQGDDMQIGFNSRFLTEMLNNLNS-----DEVALEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D   N   ++MP+ +
Sbjct: 350 TPID-----GLDEGENVTMLVMPVML 370


>gi|317489244|ref|ZP_07947761.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325832265|ref|ZP_08165264.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1]
 gi|316911645|gb|EFV33237.1| DNA polymerase III [Eggerthella sp. 1_3_56FAA]
 gi|325486101|gb|EGC88555.1| DNA polymerase III, beta subunit [Eggerthella sp. HGA1]
          Length = 366

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 183/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +S++   L    + I  ++T+P+   + L A+D  L ++A+  E+ I  ++ A 
Sbjct: 1   MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V   L  +IV+ L D A     +++       I+   ++F +++    +FP 
Sbjct: 61  IEETGKAVVPGKLFSEIVKNLPDAAVHVAAEDDSA----VITCDTASFSIKTLDAEDFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      +  +   ++V+R    ++ +E R  L G+   I  ED  L  VATD +R
Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    A+    ++    + EI  +  S+D  +K++L+E++I +         R
Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMT 298
            ++G FPNY+ ++P S    + ++  +L   V R S++       V+  ++  S  + ++
Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFDINMASQTVQLS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D+G A E+++       ++I FNY Y+L+ + ++++     D V   + SS     
Sbjct: 293 AVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVNT-----DNVFLEVQSSMKPGI 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +          D   N  Y++MP+RI
Sbjct: 348 FKA---------DEGENFLYLVMPVRI 365


>gi|257789781|ref|YP_003180387.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243]
 gi|257473678|gb|ACV53998.1| DNA polymerase III, beta subunit [Eggerthella lenta DSM 2243]
          Length = 366

 Score =  304 bits (780), Expect = 1e-80,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 184/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +S++   L    + I  ++T+P+   + L A+D  L ++A+  E+ I  ++ A 
Sbjct: 1   MKFSINQSELQNALSVVLKGIATRSTLPILSGIYLDAHDDTLTLQATDLELSIQYSVAAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V   L  +IV+ L D A     +++       I+   ++F +++    +FP 
Sbjct: 61  IEETGKAVVPGKLFSEIVKNLPDAAVHVAAEDDSA----VITCDTASFSIKTLDAEDFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      +  +   ++V+R    ++ +E R  L G+   I  ED  L  VATD +R
Sbjct: 117 FPHVDVQQEVSIPFTQFASMVKRVARVVSKDESRAILTGVL--ITLEDTTLKMVATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E ++    A+    ++    + EI  +  S+D  +K++L+E++I +         R
Sbjct: 175 LAITEAELPESSAEEFQAVIAGSFLQEISSLPRSED-DLKLALAENQIVVTYHDTVFINR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMT 298
            ++G FPNY+ ++P S    + ++  +L   V R S++       V+ +++  S  + ++
Sbjct: 234 RLEGNFPNYRQLLPDSYATRVSMDVGHLVAGVKRTSLL-GQTSSPVRFAINMASQTVQLS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D+G A E+++       ++I FNY Y+L+ + ++S+     D V   + SS     
Sbjct: 293 AVAQDVGSAQETLSCEGEGEDVEIAFNYAYVLDGLSSVST-----DNVFLEVQSSMKPGI 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +          D   N  Y++MP+RI
Sbjct: 348 FKA---------DEGENFLYLVMPVRI 365


>gi|259502129|ref|ZP_05745031.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri
           DSM 16041]
 gi|259169942|gb|EEW54437.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus antri
           DSM 16041]
          Length = 380

 Score =  304 bits (779), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 98/396 (24%), Positives = 178/396 (44%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T+ R+  +  L +  R I  K TIP+   + +  +   + +  S  +I I   I A+
Sbjct: 1   MNFTINRTAFISQLNNVLRAISSKTTIPILTGLKMVVDTDRIVLTGSNSDITIESVIDAN 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   G+I + A    +IV+KL D        E   G +  I+ G + F +   
Sbjct: 61  NEDYGLTVKEAGAIVLPARFFSEIVKKLPDKQV---TIEVTNGFQAEITSGTAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             S FP   E E   +  LA+ VLK ++ +T  A++ +E R  L G+ F +   D  L A
Sbjct: 118 DASNFPHLPEIESDNTITLATDVLKEVIRQTVIAVSKQESRPILAGVHFTLK--DGLLTA 175

Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRLA  +V +     +    II+P K++ E+  ++S     VKV +SE+++    
Sbjct: 176 VATDSHRLAQRKVALENVDNSISFDIIIPGKSLDELSGMMSDDSEDVKVQVSENQVLFIF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290
            +     RL++G +P    +IP ++D  + V       ++DR S++S   R   VKL++ 
Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPTTSDTTVEVEAGTFLSSIDRASLLSHESRNDVVKLTIQ 295

Query: 291 -SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            ++ ++ ++ D+PD+G   E +         ++I FN  Y+ + + +          +  
Sbjct: 296 PANQRVKISSDSPDIGTVEEEVATTALEGQDLEISFNPNYMKDALRSFGQST-----IRI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              S+     +   +           N  +++ P+R
Sbjct: 351 SFTSALRPFTLVPTED--------TENFVHLITPVR 378


>gi|15612565|ref|NP_240868.1| DNA polymerase III subunit beta [Bacillus halodurans C-125]
 gi|13959350|sp|Q9RCA1|DPO3B_BACHD RecName: Full=DNA polymerase III subunit beta
 gi|5672648|dbj|BAA82686.1| 58%-identity [Bacillus halodurans]
 gi|10172614|dbj|BAB03721.1| DNA polymerase III (beta subunit) [Bacillus halodurans C-125]
          Length = 380

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 90/397 (22%), Positives = 182/397 (45%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   ++R   ++ + H  + +  + TIP+   + + A+   + +  S  +I I   IP  
Sbjct: 1   MHFVIDRDIFVQNVNHVSKAVSSRTTIPILTGIKIVADHEGVTLTGSDSDISIETFIPLE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A +  +IV+KL +       +++ + T   I  G S F L  
Sbjct: 61  EGDRQNVEVKQEGSIVLQAKVFAEIVKKLPEQEIEIHVQDSFVTT---IRSGSSVFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P     E  + F L   +LK+++ +T FA++T+E R  L G+ F I  ED  L 
Sbjct: 118 LDPDEYPRLPVLEEDHVFRLPQKILKDIIRQTVFAVSTQETRPVLTGVNFEI--EDGILT 175

Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+ +V +     +    ++++P K++ E+ +IL   +  + + ++E++   
Sbjct: 176 CTATDSHRLAMRKVPVEKNDDELQFSNVVIPGKSLNELSKILDENEELLDIVVTENQTLF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288
            ++++    RL++G++P  +N+IP        V+     Q ++R  ++S   + Q + L 
Sbjct: 236 KLKNMLFFSRLLEGKYPVTKNMIPKEAKTSFAVHTKAFLQTLERALLLSREGKNQVINLK 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +L    + +T   P++GK  E++         + I FN K +++ +  + S     + + 
Sbjct: 296 TLGDGVVEVTAITPEIGKVTENVATQGLEGEELRISFNGKNVIDALKVVDS-----ESIH 350

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                + S   +   D D          + ++  P+R
Sbjct: 351 IAFTGAMSPFVLSPTDHDQ---------SLHLFSPVR 378


>gi|262277741|ref|ZP_06055534.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114]
 gi|262224844|gb|EEY75303.1| DNA polymerase III, beta subunit [alpha proteobacterium HIMB114]
          Length = 369

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 204/385 (52%), Gaps = 17/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R  +L+ L H   ++E+KNT+P+  +VL++A+DG L++ A+  +I IT  +   
Sbjct: 1   MEFKIDRDVLLKSLAHVQGVVEKKNTLPILGNVLIEAHDGFLKLTATDLDIIITEKLTCQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS T +A ++YDIVRKL+ G+ +      +    + +  G S+F L      EFP 
Sbjct: 61  TIKEGSTTTTAQVIYDIVRKLKTGSSLHLSL--KENNRLKLISGKSDFNLTCISPDEFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++       E+ S     ++ +T F+++ +E R+YLNG++    + + KL AVATDGHR
Sbjct: 119 LEDNMDEQYLEIPSFEFLKIINKTKFSISNDETRHYLNGVYLDKKDGENKLIAVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+ +  +I        S+I+P+K V E+L I+     ++K+  ++S+I    + + +  +
Sbjct: 179 LSKSATEIKG-ADNFQSVILPKKTVFELLTIIDEDSINLKILSTKSKIKFLYKDIVLISK 237

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +IDG+FP+Y+ VIP       + N      A+DR+  +SS R   +K+SL    +   ++
Sbjct: 238 VIDGKFPDYEKVIPKDERIAAKSNVEEFISALDRLKSLSSDRKGVIKISLDKGLMKFLIN 297

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           +   G  IE +   Y    ++I FN  YL+++ + + S +     +V  L  + S + ++
Sbjct: 298 DAISGDGIEEVQTQYQGEHLEIGFNSTYLIDVANVLESKD-----IVLMLKDATSPIQVK 352

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +             + Y++MPMR+
Sbjct: 353 DESDPL---------STYIVMPMRV 368


>gi|269793360|ref|YP_003312815.1| DNA polymerase III subunit beta [Sanguibacter keddieii DSM 10542]
 gi|269095545|gb|ACZ19981.1| DNA polymerase III, beta subunit [Sanguibacter keddieii DSM 10542]
          Length = 376

 Score =  304 bits (778), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 89/390 (22%), Positives = 169/390 (43%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +   PV   V ++A+ +G L + +   E+     IPA
Sbjct: 1   MKFRVERDVLAEAVTWTARTLPTRPPAPVLAGVRIEASAEGTLGLSSFDYEVSARSEIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I VS  LL +I R L     + F  E   GT+V +  G S F L + P  ++P
Sbjct: 61  EVSEPGVILVSGRLLAEISRALP-AKPVDFTVE---GTKVTVVCGASRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      + S  +    L + V +   A + ++    L G+   I  E  ++  +ATD +
Sbjct: 117 ALPSMPEI-SGTVQGDELTHAVAQVTVAASRDDTLPLLTGVRVEIEGE--RITMLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           RLA+ E+        + ++ +V  + + ++ + L      V V+LS       +      
Sbjct: 174 RLALREMTWKPASPDISTVALVRARTLSDVAKSLGGS-GEVNVALSTGTGVDLVGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L+DG++P+ + + P        V    L  A  RV++++  R   +++S S  +
Sbjct: 233 RHTTSLLVDGDYPHVRRLFPDETPIHAVVPTQPLIDAAKRVALVA-ERNTPIRMSFSEGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++        + + FN ++LL+ +  + +     D V       N
Sbjct: 292 VVLDAGQGDDAQASEALEAVLVGEDISVAFNPQFLLDGLGALGT-----DFVRLSFTHPN 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V   G+D     + ++  +  Y+L+P+R
Sbjct: 347 KPVEFTGQDS---LDGEDSSHYRYLLVPIR 373


>gi|153811987|ref|ZP_01964655.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174]
 gi|149831886|gb|EDM86972.1| hypothetical protein RUMOBE_02380 [Ruminococcus obeum ATCC 29174]
          Length = 371

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 181/387 (46%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++L+ +  + + +  K T+P+   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + + A + Y+I+R+L D         N + T   I+   + F +      +F  
Sbjct: 61  IEEKGMVALDAKIFYEIIRRLPDNDVTITTDSNFVAT---ITCEKAKFTIPGKAGEDFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK ++ +T F++A  E    + G  F I +  LK+  V+ DGHR
Sbjct: 118 LPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCLKI--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +  + +    I+VP K + EI +ILS + D  V +  +++ I    +   +  
Sbjct: 176 ISIRKMPLKKEYSDR-KIVVPGKTLSEISKILSGEIDDQVSIYFTKNHILFEFDQTMVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    D ++ VN       +DR +++      + + + +  + + + 
Sbjct: 235 RLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLLVREGDKKPIVIEIKDNSMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  MG   E +++  +   + I FN K+L++ +  I      D+ +   L +  +  F
Sbjct: 295 IDSA-MGSMNEEIDIEKDGKDILIGFNPKFLIDALKVID-----DEVIHMYLMNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          D++ N  Y+++P+ I
Sbjct: 349 IR----------DDEENYTYLILPVNI 365


>gi|331083520|ref|ZP_08332632.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
 gi|330404213|gb|EGG83761.1| DNA polymerase III [Lachnospiraceae bacterium 6_1_63FAA]
          Length = 405

 Score =  303 bits (777), Expect = 2e-80,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 176/385 (45%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +    + +  K T+P+   +L+ A+   ++  ++  E+ I   +   
Sbjct: 36  MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 95

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A +  +IVRKL D        E    T   I+   + F +      +F  
Sbjct: 96  VLEKGIIALDAKIFSEIVRKLPDNDVTIETDEKLNAT---ITCEKAKFNIPGKSGEDFSY 152

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  E    + G  F I  E+  L  ++ DGHR
Sbjct: 153 LPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLRVISLDGHR 210

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +         ++VP K + EI +ILS + +  V++ LS + I    +   +  
Sbjct: 211 ISIRKIGLKENCEDR-KVVVPGKTLNEISKILSGELEDMVEIYLSANHILFEFDDTKVVS 269

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++++N       +DR +++      + + +++ + ++ + 
Sbjct: 270 RLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINIQNGQMELR 329

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  +G   E +++      + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 330 IDSQ-IGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYLMNAKAPCF 383

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D+     Y+++P+
Sbjct: 384 IR----------DDNQQYIYLILPV 398


>gi|157273494|gb|ABV27393.1| DNA polymerase III beta subunit [Candidatus Chloracidobacterium
           thermophilum]
          Length = 391

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 108/406 (26%), Positives = 189/406 (46%), Gaps = 38/406 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ------ANDGLLEIKASGPEIEIT 54
           M+ +V ++D+L+ L     ++E+K TIP+  ++LL       A   LL +  +  +  + 
Sbjct: 1   MEFSVAKADLLKELSLLNNVVEKKTTIPILSNILLSGEAGGPAASNLLTLAGTDLDATLR 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            + PA++   G+  + A  L DIVR L D      FK +  G  +NI+   S F L S  
Sbjct: 61  TSCPATIRHSGTALLPARRLLDIVRNLPDADI--HFKSDGSGN-MNITCERSRFRLFSPA 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI------NEED 168
              +PS  E        + + +++ ++ R  FA + EE RY LNG+   +       +  
Sbjct: 118 PEGYPSLPETP-ALPLSVPAGIMRTMIPRVLFATSQEESRYQLNGVQMVVEGLAADKDAS 176

Query: 169 LKLCAVATDGHRLAVAEVD--------IVAQIAK-MPSIIVPRKAVGEILRILSSKD-SS 218
             L  VATDGHRLA+ E          +  +  K   S ++P+K + EI R+ +    + 
Sbjct: 177 GLLRMVATDGHRLALIERPECVRLTGSLPTEKGKHRISFLIPKKTMAEIARLAADTTATE 236

Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           +     +  +   I S   + RL+ G+FPNY+ V+P +N+  +      L  A  RV ++
Sbjct: 237 IAFGQDDRHVFFQIGSRLFASRLLAGQFPNYEGVMPRNNNNIIIFETERLVAAFKRVGVV 296

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           +     AVKL  +  ++ +   +P+ G+A+E+++V Y    + I FN  YL++ +    S
Sbjct: 297 ADETTHAVKLHATEGRVEIMSQSPESGEAVETLSVDYPGPSITITFNVTYLMDFLTVAHS 356

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +       F      + + +R  D D         +  YV+MPMR
Sbjct: 357 TQT-----RFEFKDEITQIQMRPVDGDG-------YDYRYVVMPMR 390


>gi|159035676|ref|YP_001534929.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205]
 gi|157914511|gb|ABV95938.1| DNA polymerase III, beta subunit [Salinispora arenicola CNS-205]
          Length = 377

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 172/392 (43%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   VLL+ +D  L++     E+     +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPSRPSVPVLAGVLLRVSDANLQVSGFDYEVSSQVTVEVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++P+
Sbjct: 61  GDADGAALVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V +  + ++     V +   A   +E    + G+   ++     L  +ATD +R
Sbjct: 117 LPEMP-VSTGTVDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGG--TLAMLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           LA+ E++      ++  + +VP + + +  + L S    V ++LS     E  I     +
Sbjct: 174 LALREMEWNPDDPEITLNALVPARTLHDTAKALGSLGGQVTMALSQGAAGEGMIGFAGGT 233

Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              + RL+DG  +P  +++ P +++ + +V  + L + V RV++++  R   V LS S D
Sbjct: 234 RRTTSRLLDGANYPPVRSLFPATHNAQAQVPVSALIEVVKRVALVA-ERTTPVLLSFSGD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +  +A E+M   +   P+ + FN +YL++ + N+ +        V     +
Sbjct: 293 GLVVEAGGTEEARASEAMEATFTGDPLTVGFNPQYLIDGLSNMGTQS-----AVLSFVDA 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I    +D +          Y++MP+R+
Sbjct: 348 FKPAVISPVGEDGEVVP----GYRYLIMPIRV 375


>gi|284988631|ref|YP_003407185.1| DNA polymerase III subunit beta [Geodermatophilus obscurus DSM
           43160]
 gi|284061876|gb|ADB72814.1| DNA polymerase III, beta subunit [Geodermatophilus obscurus DSM
           43160]
          Length = 386

 Score =  303 bits (777), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 79/397 (19%), Positives = 155/397 (39%), Gaps = 25/397 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  + + +    R +  + ++PV   +LL+ +   L +     E+     +   
Sbjct: 1   MKFRVAREVLADAVAWTARSLPPRPSVPVLAGILLEVDGSQLSVSGFDYEVSARAEVDVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V   LL +I R L              G  ++IS G++ F L + P  ++PS
Sbjct: 61  ATESGRVLVPGRLLAEITRALPP----HPVDLTAEGPRLSISCGNARFSLPTLPVEDYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                        S V    V +   A   ++    L G+   I ++ + L   ATD +R
Sbjct: 117 LPAMPSSAGVV-DSDVFAEAVGQVAVAAGRDDTLPMLTGVRLEIEDDLVTL--AATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDS----SVKVSLSESRIHLNIESL 235
           LAV E            +++VP + + +  + L+S           S  E  + L+ +  
Sbjct: 174 LAVREFAWRPDTPGLTTAVLVPARTLADAAKTLTSGPEITLSLSSGSSGEGILGLSGKDR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + RL+D EF  Y+ ++P  +     +       A  RV++++  R   ++   +  ++
Sbjct: 234 QTTTRLLDAEFVKYRAIMPNESASNATLPVGLFTDAAKRVALVA-ERGTPLRCEFTPGQV 292

Query: 296 CMTVDNP-DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            +      D G+A E  +V +   P+ I FN  +LL+ +  + +             S  
Sbjct: 293 TLRAGGTDDEGQAEERCDVEFEGEPLTIGFNPTFLLDGLAAVHT-----PRARMDFTSPL 347

Query: 355 SSVFIRG------KDKDSKNNKDNKVNAFYVLMPMRI 385
               + G       D+ +    +   +  Y++MP+R+
Sbjct: 348 KPAVLSGVPEPATDDEAASRPAERPGSYRYLIMPVRL 384


>gi|296127871|ref|YP_003635121.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109]
 gi|296019686|gb|ADG72922.1| DNA polymerase III, beta subunit [Cellulomonas flavigena DSM 20109]
          Length = 376

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 169/390 (43%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+  V+R  + + +    R +  +  +PV   V ++A+  G +++ +   E+     +PA
Sbjct: 1   MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADTTGTVQLSSFDYEVSARAQLPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VS  LL +I R L              GT+V ++ G S F L + P  ++P
Sbjct: 61  DVSEPGTVLVSGRLLAEISRALPAKP----VDVVLDGTKVQVTCGASRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S      V +  +    L + V +   A + ++    L G+   I  E  ++  +ATD +
Sbjct: 117 SLPVMPEV-TGTVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGE--RVTLLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           RLA+ E+        + ++ +V  + + +  + L     SV V+LS+      I      
Sbjct: 174 RLALREMTWKPASPTVEAVALVRARTLSDAAKSLGGA-GSVSVALSDGGGVDLIGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L+DG++P  + + P        V+   L +A  RV++++  R   ++LS S  +
Sbjct: 233 RQTTSLLVDGDYPPVRRLFPDETPIHAIVHRQALAEAAKRVALVA-ERNTPIRLSFSDGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++        + + FN ++L + +  + +       V       N
Sbjct: 292 VVLDAGQGDDAQASEALEASLVGDDISVAFNPQFLADGLGALDTT-----FVRMSFTHPN 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V   G++       D++ +  Y+L+P+R
Sbjct: 347 KPVEFTGQES---LEGDDRKDYRYLLVPIR 373


>gi|302669376|ref|YP_003829336.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus
           B316]
 gi|302393849|gb|ADL32754.1| DNA polymerase III beta subunit DnaN [Butyrivibrio proteoclasticus
           B316]
          Length = 369

 Score =  303 bits (776), Expect = 3e-80,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 181/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +S+++  L    + +  K T+ +   +L+ A +G+++  A+  E+ I   +  +
Sbjct: 1   MKFVCSKSNLVSGLQIVSKAVPSKTTMSILECILVDATEGIIKFIANDMELGIQTVVEGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  DIVRKL D        E++   +V IS   + F L      +F  
Sbjct: 61  IVERGYIALDAKIFVDIVRKLPDNDV---TIESDSTNKVTISCERAKFNLIGRKGDDFTY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E +    ++   L+N++++T F++A  +    + G  F ++ E+LKL  V+ DGHR
Sbjct: 118 LPSIEKIDGVTVSQYTLRNVIQQTIFSIAENDANKMMAGELFEVDGENLKL--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +         +IVP K +GEI +IL    +  V +  ++  +    +  ++  
Sbjct: 176 ISIRKVKLNGSYP-YKKVIVPGKTLGEISKILGDSIEKMVNIYFTDKHVLFEFDKTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+ +   ++    + ++ +N       +DR +++      + V +S++  K+ + 
Sbjct: 235 RLIEGEYFSIDQMLSSDYETKISINRKEFLDCIDRATLLVKEGDKKPVIISVTDGKIELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++  +G   E + +      + I FN K+L++ +  I      D+ V   + +  +  F
Sbjct: 295 INSA-IGSMDEEIEIDKQGKDLMIGFNPKFLIDALRVID-----DELVDIYMVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D +    Y+++P+
Sbjct: 349 IR----------DKESTYIYLVLPV 363


>gi|222150252|ref|YP_002559405.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus
           caseolyticus JCSC5402]
 gi|222119374|dbj|BAH16709.1| DNA polymerase III beta chain, sliding clamp subunit [Macrococcus
           caseolyticus JCSC5402]
          Length = 377

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 88/394 (22%), Positives = 180/394 (45%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++R   +  L    + I  + T+PV   + L   D  L +  S  E+ I   IP+ 
Sbjct: 1   MKFTIQRDYFIAQLNDTLKAISPRTTLPVLTGIKLDVFDNRLVLTGSDSEVSIEITIPSE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GSI +      DI++KL          E     +  I+ G S F +  
Sbjct: 61  LNHEEILTVENKGSIVLPGRFFVDIIKKLPADTV---TIETNDQFQAKITSGQSEFNVSG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P   +     +  L   VLKN++++T+FA++T E R  L G+ + I   D  L 
Sbjct: 118 IDSDQYPLLPQVSEEEAITLPVKVLKNIIKQTNFAVSTSETRPVLTGVNWLIR--DNVLN 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ ++ +        ++I+P KA+ E+ +I+   + ++ +  + +++    
Sbjct: 176 CTATDSHRLALRKLKLEDTNIDEINVIIPGKALSELNKIIGDNEDTIDIFFAANQVLFKF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
             ++   RL++G +P+   + P  ++  L +N  +   A+DR S+++       +KLS +
Sbjct: 236 GHINFISRLLEGNYPDTSRLFPEISETALSINNGDFFHAIDRASLLAREGGNNVIKLSAT 295

Query: 292 SDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            + + ++  +P++G   E++    ++   + I FN KY+++ +  I       ++V    
Sbjct: 296 DNTVELSSTSPEIGTVKENVKTSKFDGTGIKISFNSKYMMDALRAID-----VEDVRVEF 350

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +     ++  + D         N   +++P+R
Sbjct: 351 FGTMRPFILKPDEDD---------NLIQLILPIR 375


>gi|258544742|ref|ZP_05704976.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC
           15826]
 gi|258520013|gb|EEV88872.1| DNA polymerase III, beta subunit [Cardiobacterium hominis ATCC
           15826]
          Length = 371

 Score =  303 bits (776), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 109/388 (28%), Positives = 191/388 (49%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAI-P 58
           MK ++ +   LE L     I+ RK T P+  H LLQA  D  L +K +  E+ +   +  
Sbjct: 1   MKFSIVKEKFLEPLADISGIVARKTTKPILSHALLQAGADNSLLLKGTDTEVTLQILLHE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+ITV A  L D+VR L   A I    E E   ++ +    S F + + P  +F
Sbjct: 61  LNVQDAGAITVPAAKLLDVVRHLPAQATIYCSLEKE---QLLVKAAGSLFRIATLPAEDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+  E +     E  S  L +++++  F+MA+E++RYYLNG++ +I E+   + AV+TDG
Sbjct: 118 PALAEADMERRIETESRALHDIMQKVRFSMASEDVRYYLNGMYLNIVEDGNAIHAVSTDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+ A   +        ++IVP+K V E++++L      V ++L E ++ L +    ++
Sbjct: 178 HRLSCARSALATPAPAGTNLIVPKKGVSELIKLLGRVSQPVVLNLGERQLSLTLGGYRLT 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG FPNY+ V+P   +  + ++     +++ R  ++   R   ++L+     L + 
Sbjct: 238 SQLIDGTFPNYEQVLPQLQETPVLISRQTFLESLQRAKVLLLDRHDGIRLTFGEASLQLA 297

Query: 299 VDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             N +   A E++ +       +++  N  YL++ I  IS      D V   +   +S  
Sbjct: 298 ARNLENETADETLEIINPQNLQLEVALNINYLIDAIATISG-----DNVQLHIADGSSPC 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   D +            YV+MPMR+
Sbjct: 353 LITSSDDEGV---------RYVIMPMRL 371


>gi|313904726|ref|ZP_07838100.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6]
 gi|313470519|gb|EFR65847.1| DNA polymerase III, beta subunit [Eubacterium cellulosolvens 6]
          Length = 369

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 182/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++ D+   +G   + +  K T+P+   +L+ A+   ++  A+  E+ I   +P  
Sbjct: 1   MKLIFDQQDLANSVGIVMKAVPSKTTMPILQCILIDASFSQIKFTANDMELGIETIVPGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  DIVRKL +        EN++ T   I+   + F +      +F  
Sbjct: 61  IAEKGKIALDAKIFSDIVRKLPNSRVTIETNENDVTT---ITCEKAKFDIPGKSGDDFAD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +      ++   L+ ++ +T F++A  E    + G  F ++    KL  VA DGHR
Sbjct: 118 LPKIDRNDFISISQLSLREVIRQTIFSIAVNENNKLMTGELFEVSNN--KLKVVALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A+  ++I ++ +    ++VP K + EI +ILS + D  V +  S++ +    +   +  
Sbjct: 176 IAIRNLEISSECS-PKRVVVPGKTLNEISKILSGEADDLVTIYFSDNYLLFEFDDTVVLS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           RLIDGE+     ++    + ++ VN       +DR +++     +  V + ++ +++ + 
Sbjct: 235 RLIDGEYFKIDQMLSSDYETKIEVNRQEFISCIDRATLLVRESDKMPVIIDITDEQMELQ 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  +G   E +++      + I FN K+LL+ +  I      D+ V     ++ +  F
Sbjct: 295 IDSA-IGSMDEEIDIEKTGKDITIGFNPKFLLDALRVID-----DERVSIFFVNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          D + N  Y+++P+ I
Sbjct: 349 IR----------DEEGNYIYLILPVNI 365


>gi|308175816|ref|YP_003915222.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117]
 gi|307743279|emb|CBT74251.1| DNA polymerase III subunit beta [Arthrobacter arilaitensis Re117]
          Length = 375

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 185/388 (47%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +VE+  + + +    R + ++   PV   +L+ +++GL+ ++    EI     IPA 
Sbjct: 1   MKFSVEKDVLADAVSWTARSLAQRPPSPVLAGILITSHEGLVRLEGFDYEISSHIEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI VS  LL +I R L +            GT+++++ G S F+L + P  E+P+
Sbjct: 61  ISEQGSILVSGKLLAEITRSLPNSTVTIETD----GTKISLNCGRSRFHLATMPVDEYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +    +        V +   A + ++    L GI   I  + +    +ATD +R
Sbjct: 117 LPELPAIAG-TIDGQAFSEAVSQVIVAASKDDTLPVLTGIKVEIENDLITF--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237
           LA+ E++     +++  S ++  K + E+ + LS+    +K++L E+   +     +   
Sbjct: 174 LALRELNWSPNKSEISTSFLIKAKTLSEVAKTLSNS-GELKLALGENGEMVGFESSNRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  LI+GE+P  +++ P        V  + L +AV RVS+++  R   V+++ +  +L +
Sbjct: 233 TSLLINGEYPKIRSLFPSDTPIHATVRTSELMEAVRRVSVVA-ERNTPVRMAFTDGQLTL 291

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                +  +A E++        + + FN  +L E +++ ++     D V F   S+    
Sbjct: 292 DAGTGEDAQAEEAIVAALRGEDIVVAFNPTFLSEGLNSFNT-----DFVRFSFTSAPKPA 346

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + G+    K ++D++    Y++MP+R+
Sbjct: 347 MLTGQ---KKLDEDDQDQYRYLVMPVRL 371


>gi|119714274|ref|YP_921239.1| DNA polymerase III subunit beta [Nocardioides sp. JS614]
 gi|119534935|gb|ABL79552.1| DNA polymerase III, beta subunit [Nocardioides sp. JS614]
          Length = 408

 Score =  302 bits (775), Expect = 4e-80,   Method: Composition-based stats.
 Identities = 92/394 (23%), Positives = 170/394 (43%), Gaps = 28/394 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  VER  + + +  A R +  + ++PV   +L++A+D  L +     E      + A V
Sbjct: 31  KFRVERDVLADAVAWAARSLPVRPSVPVLAGLLVEASDDGLVLSTFDYETSARATLTAEV 90

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G   VS  LL DI R L     +    +   G  V+++ G + F LQ+ P  ++PS 
Sbjct: 91  SDEGQALVSGRLLADICRSLP-AKPVEMVLD---GARVSLTCGSARFSLQTMPVDDYPSL 146

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  + S    + V +   A   +++   L G+   I+   + L  +ATD  RL
Sbjct: 147 PSMP-AATGTVQSEAFAHAVAQAVTAAGRDDMLPVLTGVRIEIDGSTISL--LATDRFRL 203

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIES- 234
           +  E++   +      + +VP + +G+  + L+     V ++L      E  I       
Sbjct: 204 SHRELEWSPRTPDESAAALVPARVLGDTAKSLTGG-GEVTIALATTGSGEGIIGFEGHGP 262

Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                 + RL+DGEFP  +++ P  +     V+   L ++V RV++++  R  AV+L+ S
Sbjct: 263 GGLRRTTTRLLDGEFPKVRSLFPNEHQTTALVDKAALVESVKRVALVA-ERNTAVQLAFS 321

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   + D  +A ES+    +   +   FN ++LL+ +  I         V     
Sbjct: 322 DGVLTLDAGSGDEAQASESIEATIDGEDITTGFNPQFLLDGLTAIDQPV-----VELAFT 376

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++  V I G    + +  D   +  Y+LMP R+
Sbjct: 377 QASKPVVISG----AVDGDDTDSSFRYLLMPRRL 406


>gi|145592569|ref|YP_001156866.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440]
 gi|145301906|gb|ABP52488.1| DNA polymerase III, beta subunit [Salinispora tropica CNB-440]
          Length = 377

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   VLL+  DG L++     E+     +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVLLRVTDGNLQVSGFDYEVSSQVTVEVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++P+
Sbjct: 61  GDADGATLVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V +  + ++     V +   A   +E    + G+   ++     L  +ATD +R
Sbjct: 117 LPEMP-VSAGTIDAAAFAAAVAQVAVAAGRDETLPMMTGVRLELSGG--TLAMLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           LA+ E++   +  ++  + +VP + + +  + L      V ++LS     E  I      
Sbjct: 174 LALREIEWNPEDPEISLNALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFVGGP 233

Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              + RL+DG  +P  +++ P + + + +V  + L + V RV++++  R   V LS S D
Sbjct: 234 RRTTSRLLDGANYPPVRSLFPATQNAQAQVPVSALIEVVKRVALVA-ERTTPVLLSFSDD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +  +A E+M   ++  P+ I FN +YL++ + N+ +        V     +
Sbjct: 293 GLVVEAGGTEEARASEAMEATFSGDPLTIGFNPQYLIDGLSNMGTQ-----FAVLSFVDA 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I    +D +          Y++MP+R+
Sbjct: 348 FKPAVISPVGEDGEVVP----GYRYLIMPIRV 375


>gi|225570326|ref|ZP_03779351.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM
           15053]
 gi|225160858|gb|EEG73477.1| hypothetical protein CLOHYLEM_06423 [Clostridium hylemonae DSM
           15053]
          Length = 406

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 187/385 (48%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 39  MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATADIIKLTANDMELGIQTEIEGE 98

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D   +    E +   +  I+   + F L   P  EF  
Sbjct: 99  ITERGMIAIDARIFSEIVRKLPDSDIVI---ETDANLQTVITCEKAKFDLSGKPGEEFSY 155

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S E++   LK ++ +T F++A  E    + G  F I +  L++  V+ DGHR
Sbjct: 156 LPIIEKEESIEISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNILRV--VSLDGHR 213

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  ++A    ++VP K + E+ +ILS + +S V +S + + I    ++  +  
Sbjct: 214 ISIRKIELKNEVAD-KKLVVPGKTLTEVSKILSGEAESMVNISYTNNHIVFEFDNTIVVS 272

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++R+N   L   +DR +++      + + +++  + + + 
Sbjct: 273 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDEIMELK 332

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +      + I FN K+L++ +  I      D+E    L ++ +  F
Sbjct: 333 IKSQ-IGSMNEEIMIEKEGKDLLIGFNPKFLIDALRVID-----DEEATLYLMNAKAPCF 386

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+  +  Y+++P+
Sbjct: 387 I----------KDDAESYIYLILPV 401


>gi|86738726|ref|YP_479126.1| DNA polymerase III subunit beta [Frankia sp. CcI3]
 gi|86565588|gb|ABD09397.1| DNA polymerase III, beta subunit [Frankia sp. CcI3]
          Length = 402

 Score =  302 bits (775), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 96/412 (23%), Positives = 170/412 (41%), Gaps = 39/412 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER +  E +    R +  + T  + V   +LL A   +L+I A   E+     + 
Sbjct: 1   MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPILKIAAYDYEVAAQCTVH 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  LL +I R L              GT + I+ G++ F L   P  ++
Sbjct: 61  ATVSEEGRGLVNGKLLAEITRALPAAP----VDLGIDGTRLVITCGNARFALPMLPVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      + +  +  S     V +   A   ++    L G+   I  + L L   ATD 
Sbjct: 117 PALPAMPPI-TGHIEGSAFAAAVSQVAIAAGRDDTLPVLTGVRIEIEGDTLTL--AATDR 173

Query: 179 HRLAVAEVDIVAQI----AKMPSI--------------IVPRKAVGEILRILSSKDSSVK 220
           +RLAV  +               +              +VP + + +  + LS     V 
Sbjct: 174 YRLAVRTLKWRPSETAAGPDEDGVTGVDGPPPTPVTVALVPARTLLDTAKSLSGSGVEVS 233

Query: 221 VSLS-----ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
           ++L      E+       +   + RL+DG FP Y+ ++P S+    ++    L++AV RV
Sbjct: 234 IALGTGPSGETLAGFAGSTRQTTTRLLDGSFPPYRKLLPDSSPLIAQLEIAPLQEAVKRV 293

Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           +++++ +   V+L+ S D L +        +A E++ V Y+   + + FN  YLL+ +  
Sbjct: 294 ALVAA-KTAPVQLTFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGA 352

Query: 336 ISSDEVVDDEVVFRLD--SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + SD V            ++N    + GK  D     D      Y+LMP+R+
Sbjct: 353 LESDVVRIGFASAEDPAVAANKPAILTGKADDDGEVPD----YRYLLMPIRL 400


>gi|295425826|ref|ZP_06818507.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           amylolyticus DSM 11664]
 gi|295064519|gb|EFG55446.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           amylolyticus DSM 11664]
          Length = 376

 Score =  302 bits (774), Expect = 5e-80,   Method: Composition-based stats.
 Identities = 101/392 (25%), Positives = 183/392 (46%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L  ++  L +  S  +I I   IP S
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLSEDQLVLTGSDTDISIEIKIPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  IS  +S F +     +
Sbjct: 61  EDLSVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKISSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF +A  +L+ ++  T FA+AT+E R  L+G+ F  + + +K  AVAT
Sbjct: 118 NYPRLPEIPEESSFTIAGKILREIINETQFAVATQESRLVLSGVHFTFSPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   ++++   I +++
Sbjct: 176 DSHRLSERTIALENGPQTKTDLIIPGKSLQELSRIIGEADPEVKVCPGDNQVLCRIGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293
              RL+DG +P+   ++P  +   +  +  +L  A+DR S+++ + R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLLPTESTTSVEFDLADLSSALDRASLLTHAGRNNVVNLNLDTENG 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           K+ +T  + ++G   E +N    +   + I FN  YL + +        V D +V +   
Sbjct: 296 KVKLTGTSAEIGNVEEDVNFKNLDGKNLTISFNPDYLRDALRA-----SVTDAIVMKFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +     D +           ++ P+R
Sbjct: 351 PLRPFTVTPNKDDVQ--------FIQLITPVR 374


>gi|251794038|ref|YP_003008769.1| DNA polymerase III subunit beta [Paenibacillus sp. JDR-2]
 gi|247541664|gb|ACS98682.1| DNA polymerase III, beta subunit [Paenibacillus sp. JDR-2]
          Length = 380

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 177/396 (44%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK+++ + ++ E +    +    + TIP+   + ++     + + AS  +I I   IP  
Sbjct: 1   MKLSISKHELNEAIQQVAKAASSRPTIPILGGIKIEVTHQGVTLTASDTDISIQSFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                 A+VD  G++ + A    +IV+KL          E     +  I  G ++  +  
Sbjct: 61  RDDLVIANVDKPGNVVLPAKFFVEIVKKLPSDNV---EIEVGAHFQTLIRSGSTDIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E    F++   +LK ++ +T  A +  E    L G+ + + ++ LK  
Sbjct: 118 LDPEEFPVLPSIEQNELFQMPGDLLKAMIRQTVLAASVNEQTPILTGVLWSLQDKQLKF- 176

Query: 173 AVATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA            +  ++++  K + E+ +++  +   V + ++++++   
Sbjct: 177 -VATDRHRLASRIAQAETAADYRFNNVVIAAKTLVELSKLVPDQHGLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           I ++    R++DG +P+   +IP     EL ++   L  A+DR  +MS   +   V+L +
Sbjct: 236 IGNVLFYTRVLDGTYPDTSKIIPSVFKTELVLDTKKLTDAIDRAYLMSREEKTNIVRLAT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +    + ++  + ++G+  E +    ++  P+ I FN KY+L+++  I S     + +  
Sbjct: 296 MEDGSIEISSSSTELGRVTEQLEPKQFDGEPLKIAFNSKYMLDVLKVIDS-----EHIFI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               + S + IR  D              YV++P R
Sbjct: 351 GFTGAMSPIVIRPTDHSYN---------TYVILPYR 377


>gi|33239453|ref|NP_874395.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
 gi|33236978|gb|AAP99047.1| DNA polymerase III beta subunit [Prochlorococcus marinus subsp.
           marinus str. CCMP1375]
          Length = 385

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 186/400 (46%), Gaps = 32/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           MK+   + ++   L    R +  + + PV  +VLL A+ G   L +      + I  ++ 
Sbjct: 1   MKLVCSQIELNTALQLVSRAVATRPSHPVLANVLLTADAGTGKLSLTGFDLNLGIQTSLS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS++  G+ITV + L  +I+ KL   + I+   ++    +VN+     N+ +++    +F
Sbjct: 61  ASIESSGAITVPSKLFGEIISKLSSESSITLSTDD-SSEQVNLKSKSGNYQVRAMSADDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E     ++ ++     ++ T FA +T+E +  L G+        LK  + ATDG
Sbjct: 120 PDLPMVENGAFLKVNANSFAVSLKSTLFASSTDEAKQILTGVNLCFEGNSLK--SAATDG 177

Query: 179 HRLAVAEV---------DIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESR 227
           HRLAV ++           +  +++   + +P +++ E+ R LS    DS +     + +
Sbjct: 178 HRLAVLDLQNVIASETNPEINNLSEKLEVTLPSRSLRELERFLSGCKSDSEISCFYDQGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
                    ++ R +DG +PNY  +IP     +L ++      A++R+++++      VK
Sbjct: 238 FVFISSGQIITTRTLDGNYPNYNQLIPDQFSNQLVLDKKYFIAALERIAVLAEQHNNVVK 297

Query: 288 LSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +S + +   L ++ D  D+G   ES+ + Y+   + I FN +YLLE +  I ++ ++   
Sbjct: 298 ISTNKELQILNISADAQDLGSGSESIPIKYDSEDIQIAFNSRYLLEGLKIIETNTIL--- 354

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + ++  +       D+          N  Y++MP++I
Sbjct: 355 --LKFNAPTTPAIFTPNDE---------TNFVYLVMPVQI 383


>gi|332654820|ref|ZP_08420562.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16]
 gi|332516163|gb|EGJ45771.1| DNA polymerase III, beta subunit [Ruminococcaceae bacterium D16]
          Length = 368

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 179/387 (46%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + E++ +   +  A R +  K++IP    +L++A D  L +     E  I   +PA 
Sbjct: 1   MKFSCEKALLTAAVSIASRAVAAKSSIPAMEGILIEA-DTRLRLTGYNLETGIQATVPAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ +SA L  +I+RK+ D   +   K+      VNI  G S F +      EFP 
Sbjct: 60  IKQPGSLVLSARLFGEIIRKMPDDVVVFTSKD----YMVNIKCGMSEFNILGTDPEEFPE 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   S  L  S L++++ +T FA++  E R    G  F ++  DL +  V+ DG+R
Sbjct: 116 LPTVDQQNSITLEQSALRSMIAQTLFAVSDNESRPVHTGSLFEVDHNDLTV--VSVDGYR 173

Query: 181 LAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+          ++  S +VP  A+ E+ +I  S +  V V+     I        +  
Sbjct: 174 LALRREKADKIGGSEQFSFVVPGSALSEVEKIC-SGEGPVTVNQGARHILFQAGDTVLVC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           R ++GEF  Y+N IP +N  +++ +   L  +++RVS++ S +++  ++       + +T
Sbjct: 233 RRLEGEFLPYRNAIPRNNPIQIQCDTRALLSSIERVSLIISEKLKSPLRCVFGDGMVDIT 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +G A +   +  +   ++I FN KYL++ +    +D+     +     SS +   
Sbjct: 293 TKTA-IGDAADQCPIDGDGQGLEIGFNNKYLMDALKAAPADK-----LRLEFSSSVAPCV 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + +            Y+++P+R+
Sbjct: 347 ILPAEGE--------ETFVYMVLPVRL 365


>gi|325288100|ref|YP_004263890.1| DNA polymerase III subunit beta [Cellulophaga lytica DSM 7489]
 gi|324323554|gb|ADY31019.1| DNA polymerase III, beta subunit [Cellulophaga lytica DSM 7489]
          Length = 373

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 181/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L +     L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFELKQNSLTVSASDLETTMSSVLEVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I + A LL + ++   +       +EN     V IS     + L     +EFP+
Sbjct: 61  SDNEGTIALPAKLLLETLKTFPEQPLTFVVEEN---NTVEISSNHGKYALAYVDGAEFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  +   +L   + +T FA   +++R  ++G+FF  + E+L    VATD H+
Sbjct: 118 AVELSNPSTTTILGDILATAINKTIFAAGNDDLRPVMSGVFFQFSPENLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   +       +++   I+P+K +  +  IL   ++ V +  +ES      ++  +  R
Sbjct: 176 LVKYQRT-DVTASQVAEFIMPKKPLTLLKGILGGSENDVTIEYNESNAKFTFDNTELICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N   L ++ T L  +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNVLSISRTQLLSSVRRVSIFSNKTTHQIRLKVAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L+E++ N+SS     D+V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLGNLSS-----DDVSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D   +   ++MP+ +
Sbjct: 350 TPID-----GVDEGEHVTMLVMPVML 370


>gi|256843830|ref|ZP_05549317.1| DNA polymerase III, beta subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256849615|ref|ZP_05555047.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US]
 gi|262046283|ref|ZP_06019246.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US]
 gi|256613735|gb|EEU18937.1| DNA polymerase III, beta subunit [Lactobacillus crispatus
           125-2-CHN]
 gi|256713731|gb|EEU28720.1| DNA polymerase subunit III Beta [Lactobacillus crispatus MV-1A-US]
 gi|260573613|gb|EEX30170.1| DNA polymerase III, beta subunit [Lactobacillus crispatus MV-3A-US]
          Length = 376

 Score =  302 bits (774), Expect = 6e-80,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + +  K+ AVAT
Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++      V    L + + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    +D +           ++ P+R
Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374


>gi|237784639|ref|YP_002905344.1| DNA polymerase III subunit beta [Corynebacterium kroppenstedtii DSM
           44385]
 gi|237757551|gb|ACR16801.1| DNA polymerase III, beta subunit [Corynebacterium kroppenstedtii
           DSM 44385]
          Length = 394

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 91/398 (22%), Positives = 166/398 (41%), Gaps = 28/398 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   L    R +  K T P+   V++ A+D  L +     E+     I A V 
Sbjct: 8   FRVAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLLLAGFDYEVSTRVRISAEVL 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G + V+  L  DI+  L              GT+V+++ G SNF L +    ++P   
Sbjct: 68  EPGQVLVAGKLANDIIGSLPHKDVAISVD----GTKVHVTCGQSNFELPAMTIEDYPELP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                        V    + +   A   ++    L GI   +  +++ L   ATD  RLA
Sbjct: 124 SLPEETGHIDP-HVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDNVVL--AATDRFRLA 180

Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           V E             I++P + + +  R L ++ +  +++++        +  + +  E
Sbjct: 181 VREFTWEPSSPDVDAEILIPARTLADSARTLDTRLNDPIQLAMGAAQDVGKDGLLGIVSE 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + RLID +FP ++ ++P S+     V    L  A+ RVS+++  R   VKL  S D
Sbjct: 241 NRQTTTRLIDADFPKFRPLLPKSHSSMAIVEIAPLLDAIRRVSLVA-ERNAQVKLEFSED 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L ++    + G A E++   +   P+ I FN  YL E + +I +       VVF     
Sbjct: 300 QLVLSAGGSEAGTAEETLPAQFAGEPLLIAFNANYLKEGLASIDTK-----NVVFGFTQP 354

Query: 354 NSS-VFIRGKDKDSKNNKDNKVN-----AFYVLMPMRI 385
           +   + I   +   + + D +         Y+LMP+R+
Sbjct: 355 SRPAILIPEPETMPEQDSDGQFPTPSTYFTYLLMPVRL 392



 Score = 44.8 bits (105), Expect = 0.025,   Method: Composition-based stats.
 Identities = 31/187 (16%), Positives = 75/187 (40%), Gaps = 26/187 (13%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA----VATDGHRL 181
              SF +A   L   +     ++A++  +  L G+    ++E L L      V+T     
Sbjct: 4   NGVSFRVAKDDLSAALSWVARSLASKPTQPILRGVMMTADDEGLLLAGFDYEVST----- 58

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLSMSV 239
               V I A++ +   ++V  K   +I+  L  KD  V +S+  +++H+     +  +  
Sbjct: 59  ---RVRISAEVLEPGQVLVAGKLANDIIGSLPHKD--VAISVDGTKVHVTCGQSNFELPA 113

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSDK 294
             I+ ++P     +P   ++   ++      A+ +V+  +           +K+ +  D 
Sbjct: 114 MTIE-DYPE----LPSLPEETGHIDPHVFTAAIGQVASAAGKDDSMPMLTGIKMEVKGDN 168

Query: 295 LCMTVDN 301
           + +   +
Sbjct: 169 VVLAATD 175


>gi|225377586|ref|ZP_03754807.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM
           16841]
 gi|225210562|gb|EEG92916.1| hypothetical protein ROSEINA2194_03236 [Roseburia inulinivorans DSM
           16841]
          Length = 382

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 177/385 (45%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++L  +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I   
Sbjct: 13  MKLICSKSNLLHGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D   +    E +   +  I+   + F +      +F  
Sbjct: 73  IAERGIIALDAKIFSEIVRKLPDSDVV---IETDSNFKTTITCEKAKFNIVGKSGDDFSY 129

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F I E  LK+  V+ DGHR
Sbjct: 130 IPFIERNECISISQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENQLKV--VSLDGHR 187

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + E+ +IL    +  V + LSE+ I    +  ++  
Sbjct: 188 ISIRNIELKNNY-DHKKVVVPGKTLQEVSKILPGSAEEEVNIFLSENHIVFEFDDTTVVS 246

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++    D ++++N   L   +DR +++      + + ++++   + + 
Sbjct: 247 RLIEGEYFKIEQMLSSDYDTKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELK 306

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++      + I FN K+ ++ +  I      ++EV   + +  +  F
Sbjct: 307 I-NSFIGSMNEDIDITKEGKDILIGFNPKFFIDALRVID-----EEEVSLYMVNPKAPCF 360

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++    Y+++P+
Sbjct: 361 I----------KDDEGKFIYLILPV 375


>gi|323705849|ref|ZP_08117421.1| DNA polymerase III, beta subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
 gi|323534845|gb|EGB24624.1| DNA polymerase III, beta subunit [Thermoanaerobacterium
           xylanolyticum LX-11]
          Length = 370

 Score =  302 bits (773), Expect = 7e-80,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 189/388 (48%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ++  +L  +    + +  + T+P+   +LL++ +  + +  +  EI I  +I A 
Sbjct: 1   MKFSCDKISLLNAVNKVIKGVTPRTTLPILQGILLKSENNKIVMYTTDMEIGIQCSIEAF 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI VS+ +  D+VRKL D      F E++    V I  G + F +      EFP 
Sbjct: 61  IIEDGSIVVSSKVFSDLVRKLPDDTV---FFESDESNMVYIKCGLTEFSISGNSSDEFPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +F L   +LK +++ T F++A +  R  L GI   +++    +  VA DG+R
Sbjct: 118 IPDVIKDVTFSLNQKILKEMIKMTSFSVAQDMARPILTGILMEVSKN--TINMVALDGYR 175

Query: 181 LA---VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           ++       D +++     S+++P     E+LR++   D  V +S + ++I        +
Sbjct: 176 MSIKKYVSEDPLSKNLDDFSVVIPGTTANELLRVMEDSDDEVSISFTGNQILFEFNDTKV 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +L+DG + NY+ VIP      + ++  +L  A+DR S+++S +   +K + +  +L +
Sbjct: 236 ISKLLDGNYMNYKTVIPKDFKSVVIIDKDDLIGAIDRASLLASNKSNLIKFTFNERELVI 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N + GK  E +N+      ++I FN +YLLE +  I S +     +   + +S + +
Sbjct: 296 SS-NSEKGKMSERLNIEIEGNLIEIAFNSRYLLEALRVIDSKK-----IKISMINSINPM 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I   + D         +  Y+++P+++
Sbjct: 350 IITPIEDD---------DYLYMVLPVKL 368


>gi|182416732|ref|ZP_02948131.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521]
 gi|237669656|ref|ZP_04529634.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str.
           BoNT E BL5262]
 gi|182379389|gb|EDT76884.1| DNA polymerase III, beta subunit [Clostridium butyricum 5521]
 gi|237654890|gb|EEP52452.1| DNA polymerase III, beta subunit [Clostridium butyricum E4 str.
           BoNT E BL5262]
          Length = 368

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 107/388 (27%), Positives = 199/388 (51%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           M  T E+ +ILE +    + I  K+T+P+   V ++ N  D  L +  S  ++ I   + 
Sbjct: 1   MIFTCEKQEILEGISIVQKAITGKSTMPILEGVYIKTNELDSSLTLIGSDMDVSIQTTVN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A++   GSI + A +  +I+RKL +        EN++   + I+   S F +     +EF
Sbjct: 61  ANIIEPGSIVIDAKIFGEIIRKLPNSTIKIETIENQV---IRITCEKSVFDVVYMNTNEF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E        +  ++LKN+++ T FA+A +E R  L GI F +  ++L L  VA DG
Sbjct: 118 PELPEINEDLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVKNKNLNL--VALDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA+    + + I     +++P K + E+ +IL   +  V ++ + + I  N+E   + 
Sbjct: 176 YRLAIKSEFLDSDIE--IEVVIPGKTLNEVSKILEDVEDIVDITFTNNHILFNLEKTKII 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297
            RL++G+F NY +++P  +   + VN   L+ +++R S+M+       +KL +  D L +
Sbjct: 234 SRLLEGKFINYNSLLPQEHKLSVHVNRQELQNSIERASLMAKDGNTNLIKLDIQQDNLII 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N  +GK  E +++      + I FN +YLL+++ N+      +DEVV ++ S  S  
Sbjct: 294 SS-NSQLGKVREEISMKLQGDEIQIAFNSRYLLDVLKNME-----EDEVVLKMTSGISPC 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I          ++N  NA Y+++P+R+
Sbjct: 348 VIE---------ENNNENAKYLVLPVRL 366


>gi|29374663|ref|NP_813815.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583]
 gi|227518107|ref|ZP_03948156.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104]
 gi|227555686|ref|ZP_03985733.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22]
 gi|229547128|ref|ZP_04435853.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322]
 gi|229550698|ref|ZP_04439423.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200]
 gi|255971550|ref|ZP_05422136.1| DNA polymerase subunit III [Enterococcus faecalis T1]
 gi|255974523|ref|ZP_05425109.1| DNA polymerase subunit III [Enterococcus faecalis T2]
 gi|256618526|ref|ZP_05475372.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200]
 gi|256761855|ref|ZP_05502435.1| DNA polymerase subunit III [Enterococcus faecalis T3]
 gi|256854982|ref|ZP_05560343.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|256957014|ref|ZP_05561185.1| DNA polymerase subunit III [Enterococcus faecalis DS5]
 gi|256960823|ref|ZP_05564994.1| DNA polymerase subunit III [Enterococcus faecalis Merz96]
 gi|256963984|ref|ZP_05568155.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704]
 gi|257078691|ref|ZP_05573052.1| DNA polymerase subunit III [Enterococcus faecalis JH1]
 gi|257081348|ref|ZP_05575709.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol]
 gi|257084005|ref|ZP_05578366.1| DNA polymerase subunit III [Enterococcus faecalis Fly1]
 gi|257087835|ref|ZP_05582196.1| DNA polymerase subunit III [Enterococcus faecalis D6]
 gi|257088487|ref|ZP_05582848.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188]
 gi|257417427|ref|ZP_05594421.1| DNA polymerase subunit III [Enterococcus faecalis AR01/DG]
 gi|257418841|ref|ZP_05595835.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257421344|ref|ZP_05598334.1| DNA polymerase III subunit beta [Enterococcus faecalis X98]
 gi|293382661|ref|ZP_06628589.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712]
 gi|293387927|ref|ZP_06632463.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613]
 gi|294781249|ref|ZP_06746596.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1]
 gi|300862250|ref|ZP_07108330.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11]
 gi|307268917|ref|ZP_07550281.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248]
 gi|307274013|ref|ZP_07555223.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855]
 gi|307276498|ref|ZP_07557618.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134]
 gi|307284060|ref|ZP_07564230.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860]
 gi|307287181|ref|ZP_07567252.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109]
 gi|307296591|ref|ZP_07576411.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411]
 gi|312901295|ref|ZP_07760578.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470]
 gi|312903108|ref|ZP_07762289.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635]
 gi|312908813|ref|ZP_07767752.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512]
 gi|312951719|ref|ZP_07770613.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102]
 gi|312979545|ref|ZP_07791227.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516]
 gi|29342121|gb|AAO79887.1| DNA polymerase III, beta subunit [Enterococcus faecalis V583]
 gi|227074441|gb|EEI12404.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0104]
 gi|227175196|gb|EEI56168.1| DNA polymerase III, beta subunit [Enterococcus faecalis HH22]
 gi|229304131|gb|EEN70127.1| DNA polymerase III, beta subunit [Enterococcus faecalis ATCC 29200]
 gi|229307710|gb|EEN73697.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1322]
 gi|255962568|gb|EET95044.1| DNA polymerase subunit III [Enterococcus faecalis T1]
 gi|255967395|gb|EET98017.1| DNA polymerase subunit III [Enterococcus faecalis T2]
 gi|256598053|gb|EEU17229.1| DNA polymerase subunit III [Enterococcus faecalis ATCC 4200]
 gi|256683106|gb|EEU22801.1| DNA polymerase subunit III [Enterococcus faecalis T3]
 gi|256709495|gb|EEU24542.1| DNA polymerase III [Enterococcus faecalis T8]
 gi|256947510|gb|EEU64142.1| DNA polymerase subunit III [Enterococcus faecalis DS5]
 gi|256951319|gb|EEU67951.1| DNA polymerase subunit III [Enterococcus faecalis Merz96]
 gi|256954480|gb|EEU71112.1| DNA polymerase subunit III [Enterococcus faecalis HIP11704]
 gi|256986721|gb|EEU74023.1| DNA polymerase subunit III [Enterococcus faecalis JH1]
 gi|256989378|gb|EEU76680.1| DNA polymerase III, beta subunit [Enterococcus faecalis E1Sol]
 gi|256992035|gb|EEU79337.1| DNA polymerase subunit III [Enterococcus faecalis Fly1]
 gi|256995865|gb|EEU83167.1| DNA polymerase subunit III [Enterococcus faecalis D6]
 gi|256997299|gb|EEU83819.1| DNA polymerase III beta subunit [Enterococcus faecalis CH188]
 gi|257159255|gb|EEU89215.1| DNA polymerase subunit III [Enterococcus faecalis ARO1/DG]
 gi|257160669|gb|EEU90629.1| DNA polymerase III [Enterococcus faecalis T11]
 gi|257163168|gb|EEU93128.1| DNA polymerase III subunit beta [Enterococcus faecalis X98]
 gi|291079967|gb|EFE17331.1| DNA polymerase III, beta subunit [Enterococcus faecalis R712]
 gi|291082664|gb|EFE19627.1| DNA polymerase III, beta subunit [Enterococcus faecalis S613]
 gi|294451712|gb|EFG20167.1| DNA polymerase III, beta subunit [Enterococcus faecalis PC1.1]
 gi|295112342|emb|CBL30979.1| DNA polymerase III, beta subunit [Enterococcus sp. 7L76]
 gi|300848775|gb|EFK76532.1| DNA polymerase III, beta subunit [Enterococcus faecalis TUSoD Ef11]
 gi|306495927|gb|EFM65515.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0411]
 gi|306501779|gb|EFM71070.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0109]
 gi|306503431|gb|EFM72680.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0860]
 gi|306506825|gb|EFM75975.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2134]
 gi|306509321|gb|EFM78381.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0855]
 gi|306514725|gb|EFM83276.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4248]
 gi|310625251|gb|EFQ08534.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 512]
 gi|310630292|gb|EFQ13575.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0102]
 gi|310633499|gb|EFQ16782.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0635]
 gi|311287727|gb|EFQ66283.1| DNA polymerase III, beta subunit [Enterococcus faecalis DAPTO 516]
 gi|311291672|gb|EFQ70228.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0470]
 gi|315026676|gb|EFT38608.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2137]
 gi|315030121|gb|EFT42053.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4000]
 gi|315033556|gb|EFT45488.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0017]
 gi|315036379|gb|EFT48311.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0027]
 gi|315143594|gb|EFT87610.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX2141]
 gi|315148268|gb|EFT92284.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX4244]
 gi|315151292|gb|EFT95308.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0012]
 gi|315153718|gb|EFT97734.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0031]
 gi|315155122|gb|EFT99138.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0043]
 gi|315158748|gb|EFU02765.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0312]
 gi|315163332|gb|EFU07349.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0645]
 gi|315165727|gb|EFU09744.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1302]
 gi|315168221|gb|EFU12238.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1341]
 gi|315170512|gb|EFU14529.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1342]
 gi|315174181|gb|EFU18198.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1346]
 gi|315573990|gb|EFU86181.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309B]
 gi|315578840|gb|EFU91031.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0630]
 gi|315581941|gb|EFU94132.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX0309A]
 gi|323479241|gb|ADX78680.1| DNA polymerase III, beta subunit [Enterococcus faecalis 62]
          Length = 376

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 189/393 (48%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV+RS  L+ L    R I  K TIP+   V +  ++  L +  S  +I I   +   
Sbjct: 1   MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + +    +I+RKL +        +N    +V I+ G ++F +   
Sbjct: 61  DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDN---NQVAITSGKADFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     +L   +L  ++  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   +    Q  +  +I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLSQRVIP-TEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S++ ++      L  A++R S++S   R   V+LS+S 
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  E++N    +   +DI FN  Y+ + +         D  +  +  
Sbjct: 295 DSVVLYGNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFG-----DMNITVKFL 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S      +   + +        ++   ++ P+R
Sbjct: 350 SPIRPFTLEPTETE--------LDFIQLITPVR 374


>gi|295108628|emb|CBL22581.1| DNA polymerase III, beta subunit [Ruminococcus obeum A2-162]
          Length = 371

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 85/387 (21%), Positives = 182/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++L+ +  + + +  K T+P+   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKIICSKSNLLKSVNISLKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVDGH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + + A + Y+I+R+L D         N + T   I+   + F +      +F  
Sbjct: 61  IEEKGMVALDAKIFYEIIRRLPDNDVTITTDSNYVAT---ITCEKAKFTIPGKAGEDFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK ++ +T F++A  E    + G  F I +  LK+  ++ DGHR
Sbjct: 118 LPVIEKDESLTLSQFTLKEMIRQTIFSIAVNENNRLMTGELFEIKDNCLKI--ISLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +  + +    I+VP K +GEI +ILS + D  V +  +++ I    +   +  
Sbjct: 176 ISIRKMPLKREYSDR-KIVVPGKTLGEISKILSGEIDDQVNIYFTKNHILFEFDQTMVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    D ++ VN       +DR +++      + + + ++   + + 
Sbjct: 235 RLIEGEYFRIDQMLSSDYDTKVSVNKKEFLDCIDRATLLVREGDKKPIVIEITDGSMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  MG   E +++  +   + I FN K+L++ +  I      D+ +   L +  +  F
Sbjct: 295 IDSA-MGSMNEEIDIEKSGKDIVIGFNPKFLIDALKVID-----DEVINMYLMNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          D++ N  Y+++P+ I
Sbjct: 349 IR----------DDEENYTYLILPVNI 365


>gi|255527585|ref|ZP_05394449.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
 gi|296186783|ref|ZP_06855184.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
 gi|255508718|gb|EET85094.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
 gi|296048497|gb|EFG87930.1| DNA polymerase III, beta subunit [Clostridium carboxidivorans P7]
          Length = 367

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 184/386 (47%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T E+S + E +    + I  K+T+P+   + ++ ++  L +  S  ++ I   I + 
Sbjct: 1   MKFTCEKSILQEGISTVQKAITGKSTLPILNGIHIKTHENELILTGSDIDLSIESKIKSD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI + A +  +I+RKL +        +N     + I    S F L      +FP 
Sbjct: 61  IIEEGSIVIDAKIFGEIIRKLDNDTIHISTIDN---NSIEIVCKKSRFTLIHMNSEDFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  S+LKN++  T FA A +E R  L GI F I ++  KL  VA DG+R
Sbjct: 118 LPNINENMIFSIPQSILKNMIRGTIFATAQDETRPILTGILFEIKDK--KLNLVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +      + S ++P K + E+ +IL   D SV ++ + + I  ++    +  R
Sbjct: 176 LALKSETLDTD--NIISAVIPGKTLSEVSKILEENDESVNITFTPNHILFSVGETKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++GEF  Y ++IP   + ++      L  +++R S+M        +K  +  + + +T 
Sbjct: 234 LLEGEFIKYNSIIPEEYNLKIIAKRIVLLNSIERASLMGKDGNTNLIKFDIEDENMVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E +N+     P+ I FN KYL++++  +      +DEVV  L SS S   I
Sbjct: 294 -NSQLGMVREELNIILQGEPLQIAFNSKYLIDVLKIME-----EDEVVIELSSSVSPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K         N  N  Y+++P+R+
Sbjct: 348 KNK---------NTNNCTYLVLPVRL 364


>gi|163790920|ref|ZP_02185343.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7]
 gi|159873762|gb|EDP67843.1| DNA polymerase III, beta subunit [Carnobacterium sp. AT7]
          Length = 380

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 187/396 (47%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++RS  L+ L    R I  + TIP+   + + AND  L +  S  +I I   IP S
Sbjct: 1   MKFTIKRSAFLKSLADVQRAISSRTTIPILTGLKIIANDEGLTLTGSDSDISIEAFIPVS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I + A    +IV+KL +    +   E     +  I+   ++F +   
Sbjct: 61  EEENLLTIEKTGGIVLQARFFSEIVKKLPEE---TMTIEILDHFQALITSATASFRINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P     +   +F L  ++ K ++ +T  A++T E R  L G+   I  E  K  A
Sbjct: 118 DPNNYPHLPIIDTSETFTLPVNLFKQVIGQTVIAISTHESRPILTGVNIVIENE--KFLA 175

Query: 174 VATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRL+   + I     Q  K  +II+P K++ E+ R L     ++++ ++E+++  
Sbjct: 176 VATDSHRLSQRVIPIEMNDEQATKKYNIIIPGKSLIELSRTLDETSDTIEMMITENQVLF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
             E+L    RL++G +P+ + +IP ++  E+  N + L  +++R S++S   +   VK++
Sbjct: 236 KAENLYFYSRLLEGYYPDTKRLIPDNSSTEISFNASALLGSIERASLLSHEGKNNVVKIT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++ D + ++ ++PD+G   E +  +     P+++ FN  Y+ + +      +     +  
Sbjct: 296 ITPDLIEISGNSPDVGNVKEELEYLSVEGEPIELSFNPDYMKDALRTFGQTD-----IKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  S      +   +        N  +   ++ P+R
Sbjct: 351 KFTSPVRPFILVPSE--------NGQDFIQLITPVR 378


>gi|67922001|ref|ZP_00515517.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501]
 gi|67856217|gb|EAM51460.1| DNA polymerase III, beta chain [Crocosphaera watsonii WH 8501]
          Length = 396

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 94/410 (22%), Positives = 186/410 (45%), Gaps = 41/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK    +SD+   L    R +  + T P+  +VL+ A+     + + A    + +  +  
Sbjct: 1   MKFLCSQSDLNSNLSLVSRAVASRPTHPILANVLVVADSQKNRVSLTAFDLSLGLETSFS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF----FKENELGTEVNISHGDSNFYLQSFP 114
           A V   G IT+ A LL +IV +L +G           +++    V +      F +++  
Sbjct: 61  ADVSEDGKITLRAKLLNEIVSRLPEGEITLMAEEEEDDDDDSQIVVLKSASGQFQVRAMN 120

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP     E     +L   +L   ++   FA +++E +  L G+      + L+    
Sbjct: 121 AEEFPPLPTVEEGELVQLPIVMLTEGLKGALFAASSDETKQILTGVHLTGTPDSLEF--A 178

Query: 175 ATDGHRLAVAEVDIVAQIAKM---------------PSIIVPRKAVGEILRILSSKDSSV 219
           ATDGHRL+V E  +  +                    ++ +P +A+ E+ R+L S+  S 
Sbjct: 179 ATDGHRLSVVETTLSPETDDEGNEQGESPEMPNLEGFAVTIPARALRELERMLGSRSESD 238

Query: 220 KVSL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
            ++L   E+++   +    ++VR +DG +PNYQ +IP    + + +    L  +++RV++
Sbjct: 239 TIALQVDEAQVVFQLGYQRLTVRKLDGAYPNYQMLIPQQFSRSICLERKRLLSSLERVAV 298

Query: 278 MSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           ++  +   VK + S+   ++ ++VD  D+G A ESM         +I FN KYL++ +  
Sbjct: 299 LADQKNNLVKCTFSNEDGQVSLSVDTQDLGSAKESMPAEVTGNSGEIAFNVKYLMDGLKA 358

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +++ +     +  +L+  N  V +         N    +   Y++MP++I
Sbjct: 359 LATKD-----IKIQLNEGNQPVIL---------NPLGGLQMTYLVMPVQI 394


>gi|118496617|ref|YP_897667.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           novicida U112]
 gi|194323923|ref|ZP_03057698.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|254372004|ref|ZP_04987497.1| hypothetical protein FTCG_01143 [Francisella tularensis subsp.
           novicida GA99-3549]
 gi|254375146|ref|ZP_04990626.1| DNA polymerase III [Francisella novicida GA99-3548]
 gi|118422523|gb|ABK88913.1| DNA polymerase III, beta subunit [Francisella novicida U112]
 gi|151569735|gb|EDN35389.1| hypothetical protein FTCG_01143 [Francisella novicida GA99-3549]
 gi|151572864|gb|EDN38518.1| DNA polymerase III [Francisella novicida GA99-3548]
 gi|194321820|gb|EDX19303.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           novicida FTE]
 gi|328676080|gb|AEB26950.1| DNA polymerase III beta subunit [Francisella cf. novicida Fx1]
          Length = 367

 Score =  302 bits (773), Expect = 8e-80,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 217/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L + + I F        +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDFRVNE---NKVTIVSNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  KA + + V YN+ PM+ICFNYKYLL+II+ +S     ++ +   LD+ N S  
Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          KD K N+ +++MPM+I
Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367


>gi|327533855|gb|AEA92689.1| DNA-directed DNA polymerase III beta subunit [Enterococcus faecalis
           OG1RF]
          Length = 376

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 189/393 (48%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV+RS  L+ L    R I  K TIP+   V +  ++  L +  S  +I I   +   
Sbjct: 1   MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + +    +I+RKL +        +N    +V I+ G ++F +   
Sbjct: 61  DEKAQMTIEHTGSIVLQSRFFGEIIRKLPEDMFTMEVLDN---NQVAITSGKADFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     +L   +L  ++  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   +    Q  +  +I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLSQRVIP-TEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S++ ++      L  A++R S++S   R   V+LS+S 
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHEGRNNIVRLSISP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  E++N    +   +DI FN  Y+ + +         D  +  +  
Sbjct: 295 DSVVLYGNSPEIGKVEEALNYENVSGEALDISFNPDYMKDALRAFG-----DMNITVKFL 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S      +   + +        ++   ++ P+R
Sbjct: 350 SPIRPFTLEPTETE--------LDFIQLITPVR 374


>gi|210624035|ref|ZP_03294152.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275]
 gi|210153242|gb|EEA84248.1| hypothetical protein CLOHIR_02104 [Clostridium hiranonis DSM 13275]
          Length = 368

 Score =  302 bits (773), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 188/386 (48%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +  + + +    + I  + TI +   +LL   +G L++  S  EI I   + + 
Sbjct: 1   MKLICNQKILSQKISIVQKAINSRTTIELLKGILLSTENGALKLTGSDAEIRIETFVQSE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I + A L  DIVRKL D        E +    V+I   +S F ++     E+P+
Sbjct: 61  IEEDGKIVLDAKLFGDIVRKLPDS---FVQIETDANNNVHIYCENSRFTIKGHSAEEYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E    + +   +LK+++++T FA++ ++ +  L G       E+ K   VA DG+R
Sbjct: 118 FSDVEESEMYSIPQELLKDMIKQTSFAISQDQTKPVLMGELLE--AENGKASLVAIDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV    I +   K   +I+P K + +I  +++  + S+ V  +E      +    +  R
Sbjct: 176 LAVRSCSIDS-FTKDIKVIIPGKTLVDINSLMT-GEGSINVGFTEKNAVFMLGDTKVVTR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L++G+F +Y  ++P   +  +++    L  +++R S++S S R   +KLS+  D + +T 
Sbjct: 234 LLEGDFIDYSRLLPKEYNSRIKLKSKALLNSIERASLLSQSERNNLIKLSIRDDAMVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D G   E +++      +DI FN +YL+E + NI S     +E+     ++ +   +
Sbjct: 294 -NTDRGNVYEEVSLELEGEYLDIAFNSRYLMEGLKNIDS-----EEIYIEFTTNVNPCIV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D+         ++  Y+L+P+R+
Sbjct: 348 KPVDE---------IDYTYLLLPVRM 364


>gi|295691864|ref|YP_003600474.1| DNA polymerase iii, beta subunit [Lactobacillus crispatus ST1]
 gi|295029970|emb|CBL49449.1| DNA polymerase III, beta subunit [Lactobacillus crispatus ST1]
          Length = 376

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 169/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + +  K+ AVAT
Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++      V    L + + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    +D +           ++ P+R
Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374


>gi|227877541|ref|ZP_03995602.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
 gi|227862864|gb|EEJ70322.1| DNA-directed DNA polymerase [Lactobacillus crispatus JV-V01]
          Length = 376

 Score =  301 bits (772), Expect = 9e-80,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 170/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + +  K+ AVAT
Sbjct: 118 NYPRLPEIPDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++   +  V    L + + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGLNNVVTLTLDIENQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    +D +           ++ P+R
Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374


>gi|167627067|ref|YP_001677567.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
 gi|167597068|gb|ABZ87066.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25017]
          Length = 367

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 218/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   N+  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L D + I F  ++    +V I   +S F L S     +P 
Sbjct: 61  CNTNIKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+   L+ ++ R SI+++ + + V+L++S  ++ ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  KA + + V YN+  M+ICFNYKYLL+II+ +S     ++ +   LD+ N S  
Sbjct: 296 ANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDIINVLS-----EETMTIYLDNPNMSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          KD K N+ +++MPM+I
Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367


>gi|154508241|ref|ZP_02043883.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC
           17982]
 gi|153797875|gb|EDN80295.1| hypothetical protein ACTODO_00735 [Actinomyces odontolyticus ATCC
           17982]
          Length = 378

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A    L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + VS  LL DI + L              G +VN+  G S+F L   P  E+P 
Sbjct: 61  VDEAGEVLVSGRLLADISKSLPSKP----VSVELDGQKVNLVCGSSHFTLAVMPLDEYPL 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +        +S++    V +   A + ++    L G+   IN   + L  +ATD +R
Sbjct: 117 LPSQPTGVGAIDSSTLS-QAVSQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232
           LA+ E+D       +  + +V  + + ++ + ++S  + V+V LS        S I    
Sbjct: 174 LAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFTA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    +  L+DG++P  + + P +   +  V+   L +AV R+S+++  R  +V+L+ + 
Sbjct: 233 QGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVA-ERKTSVRLAFTE 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +L +     D  +A E++    N   +   FN ++L++ +  + +     D V F    
Sbjct: 292 GQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFLIDGLQVLDT-----DYVRFGFTH 346

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I G+    K ++       Y+LMP+R
Sbjct: 347 PTKPAVITGQ---KKADEGEVTQFRYLLMPIR 375


>gi|199598233|ref|ZP_03211654.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus
           HN001]
 gi|199590836|gb|EDY98921.1| DNA polymerase sliding clamp subunit [Lactobacillus rhamnosus
           HN001]
          Length = 379

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A 
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F ++  
Sbjct: 61  DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  + + VL+ L+ +T  A++T+E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADEALTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + A       II+P K++ E+ R+L    + +++ ++E+++     
Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++S      V    L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              K  +  ++PD+G   E ++        ++I FN  Y+ + +       +  D     
Sbjct: 296 GEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +      +   +         K     ++ P+R
Sbjct: 351 FTAPLRPFTLVPTED--------KEKFIQLITPVR 377


>gi|254414533|ref|ZP_05028299.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
 gi|196178763|gb|EDX73761.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
          Length = 400

 Score =  301 bits (772), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 88/414 (21%), Positives = 184/414 (44%), Gaps = 45/414 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+T  +S++   L    R +  + T PV  +VLL+A   +  + + A    + +  +  
Sbjct: 1   MKLTCTQSELNTNLSLVNRAVPSRPTHPVLGNVLLKADAENQRVSLTAFDLSLGLQTSFN 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISF-------FKENELGTEVNISHGDSNFYLQ 111
           A+V+  G+I + A L  DIV +L +G               +     + ++     + ++
Sbjct: 61  ANVEADGAIAIPAKLFNDIVSRLPEGDITLEDSLSEAESDADTESLSITLTSTSGQYKMR 120

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                +FP   + E     +L    L   +  + FA + +E +  L G+   + E+ L+ 
Sbjct: 121 GMNSEDFPELPQIEDGMVVKLPVEALIEGLRGSLFATSADETKQVLTGVHLMVQEDSLEF 180

Query: 172 CAVATDGHRLAVAEV----------------DIVAQIAKMPSIIVPRKAVGEILRIL--S 213
              ATDGHRLAV E                            + VP + + E+ R+L  S
Sbjct: 181 --AATDGHRLAVVETLNAKPTSEESQEDEEKPASEDTISSFELTVPARTLRELERMLGLS 238

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
               +V +     +I     +  ++ R ++G++P Y+ +IP    +++ +    L  AV+
Sbjct: 239 ESSDTVALQFEVGQIIFQGGNHRLTSRTLEGQYPAYRQLIPGQFQRQVAIPRRQLLSAVE 298

Query: 274 RVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           R+++++  +   VK  +   +  + +TV+  D+G A ES++       ++I FN KYL++
Sbjct: 299 RIAVLADQKNNIVKFDIDAQAQTIDLTVETQDVGSARESLSAQVTGESIEIAFNVKYLID 358

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +S+ +     + F+++++N+ V +              +   Y++MP++I
Sbjct: 359 GLKALSTSD-----IQFQMNAANTPVILTP---------LGGLKMTYLIMPVQI 398


>gi|241667602|ref|ZP_04755180.1| DNA-directed DNA polymerase [Francisella philomiragia subsp.
           philomiragia ATCC 25015]
 gi|254876147|ref|ZP_05248857.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
 gi|254842168|gb|EET20582.1| DNA polymerase III [Francisella philomiragia subsp. philomiragia
           ATCC 25015]
          Length = 367

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 121/387 (31%), Positives = 218/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   N+  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDINNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L D + I F  ++    +V I   +S F L S     +P 
Sbjct: 61  CNTNVKLALNADKIYNIVRSLNDNSMIDFRIDD---NKVTIISNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINSNLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITESIIDSKVLDSDSQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAEFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+   L+ ++ R SI+++ + + V+L++S  ++ ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQVLKNSLLRTSILANDKYKGVRLNISQGQVLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  KA + + V YN+  M+ICFNYKYLL+II+ +S     ++ +   LD+ N S  
Sbjct: 296 ANNPDNEKAEDKVEVQYNDNDMEICFNYKYLLDIINVLS-----EETMTIYLDNPNMSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          KD K N+ +++MPM+I
Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367


>gi|187930915|ref|YP_001890899.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
 gi|187711824|gb|ACD30121.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           mediasiatica FSC147]
          Length = 367

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 217/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L + + I F        +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITEAIIDSKVLDSASKSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  KA + + V YN+ PM+ICFNYKYLL+II+ +S     ++ +   LD+ N S  
Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          KD K N+ +++MPM+I
Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367


>gi|149370683|ref|ZP_01890372.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49]
 gi|149356234|gb|EDM44791.1| DNA polymerase III, beta-subunit [unidentified eubacterium SCB49]
          Length = 372

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 180/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     II   NT+P+  + L + +   L++ AS  E  +T  +   
Sbjct: 1   MKFIVSSSYLLKKLQVLGGIINNNNTLPILDNFLFELHGNSLKVSASDLESTVTSMLDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ + A LL D ++   +       +EN     V IS     + L     +EFPS
Sbjct: 61  SNEVGNVCIPARLLLDTLKTFPEQPLTFTLEEN---NTVEISSNHGKYALAYADGAEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +   S  +   +L   + +T FA   +++R  ++G+FF  N + L    VATD H+
Sbjct: 118 AVELKDPSSTIIQGDILATAISKTIFASGNDDLRPVMSGVFFQFNTDGLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     +   + A+    I+P+K +  +  IL+  +  V V  ++S    + +   +  R
Sbjct: 176 LVKYTRE-DVKAAETAEFIMPKKPLNLLKSILAGSEDEVVVEYNDSNAKFSFDGTELICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L ++      +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNKLSISRNQFLNSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L E+++N++      D+V   +   N +  +
Sbjct: 295 DVDYSNKAEERLTCDYQGDDMQIGFNSRFLTEMLNNLTC-----DDVSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPVD-----GLDEGERVTMLVMPVML 370


>gi|229551103|ref|ZP_04439828.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|258538193|ref|YP_003172692.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus Lc 705]
 gi|229315564|gb|EEN81537.1| DNA-directed DNA polymerase [Lactobacillus rhamnosus LMS2-1]
 gi|257149869|emb|CAR88841.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus Lc 705]
          Length = 379

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 173/395 (43%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A 
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F ++  
Sbjct: 61  DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  + + VL+ L+ +T  A++T+E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + A       II+P K++ E+ R+L    + +++ ++E+++     
Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++S      V    L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              K  +  ++PD+G   E ++        ++I FN  Y+ + +       +  D     
Sbjct: 296 GEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +      +   +         K     ++ P+R
Sbjct: 351 FTAPLRPFTLVPTED--------KEKFIQLITPVR 377


>gi|332971205|gb|EGK10168.1| DNA-directed DNA polymerase III beta subunit [Desmospora sp. 8437]
          Length = 378

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 195/395 (49%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  + R+ + E +    + +  K T+P+   +    ++  L +  S  ++ I   IP  
Sbjct: 1   MKFRICRTALTEAVSQVSKAVSTKTTVPILTGIHATVDEEGLWLTGSNSDLTIQVCIPLR 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +VD  GS+ +   +  DIVRKL  G Q+ +  +    T ++     ++F L+ 
Sbjct: 61  RDDKELVNVDTMGSVVLPGRIFSDIVRKLP-GDQVEWDVDERWKTTLH--SDQAHFELKG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P     +    F L + +LK+++ +T FA++T E R  L G+ + +  E  +L 
Sbjct: 118 LDPEEYPRVPRFDEEQMFSLPAELLKSMIRQTGFAVSTSEARGVLTGVLWRL--ESGRLT 175

Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD  RL+  E D+   +   + ++++P K++ E+ +IL+ +   V V L++++I + 
Sbjct: 176 FVATDSIRLSRKEADVEVPEELTLENVVIPGKSLSELGKILADQTGWVDVILADNQIMVR 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
            + L    RL+DG +P+   VIP S   E+RV+   + Q+VDR +++S   R   +K ++
Sbjct: 236 SDHLLFFSRLLDGTYPDTNRVIPKSGKTEIRVSTKEILQSVDRAALISRDGRDNVIKWTV 295

Query: 291 SS-DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                + +     D+G  +E ++   +   + + FN +Y+++ +  + S     DE+   
Sbjct: 296 KEKGVVQVQSAAQDVGSVLEEVDAQVDGEEVSLSFNAQYMMDALRAVDS-----DEIRIL 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           L  + +   I+  D++         +A ++++P+R
Sbjct: 351 LTGTMTPFLIQPADRE---------DALHLIVPIR 376


>gi|56707189|ref|YP_169085.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89255451|ref|YP_512812.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|110669659|ref|YP_666216.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115313983|ref|YP_762706.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134301171|ref|YP_001121139.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|156501372|ref|YP_001427436.1| DNA polymerase III, subunit beta [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|208780098|ref|ZP_03247441.1| DNA polymerase III, beta subunit [Francisella novicida FTG]
 gi|254366861|ref|ZP_04982899.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica 257]
 gi|254368433|ref|ZP_04984450.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|254371403|ref|ZP_04987404.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|56603681|emb|CAG44635.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis SCHU S4]
 gi|89143282|emb|CAJ78443.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica LVS]
 gi|110319992|emb|CAL08018.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           tularensis FSC198]
 gi|115128882|gb|ABI82069.1| DNA-directed DNA polymerase [Francisella tularensis subsp.
           holarctica OSU18]
 gi|134048948|gb|ABO46019.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis WY96-3418]
 gi|134252689|gb|EBA51783.1| DNA polymerase III, beta chain [Francisella tularensis subsp.
           holarctica 257]
 gi|151569642|gb|EDN35296.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           FSC033]
 gi|156251975|gb|ABU60481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica FTNF002-00]
 gi|157121327|gb|EDO65528.1| DNA polymerase III [Francisella tularensis subsp. holarctica
           FSC022]
 gi|208744102|gb|EDZ90403.1| DNA polymerase III, beta subunit [Francisella novicida FTG]
 gi|282158288|gb|ADA77679.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis NE061598]
          Length = 367

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 120/387 (31%), Positives = 217/387 (56%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L + + I F        +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  KA + + V YN+ PM+ICFNYKYLL+II+ +S     ++ +   LD+ N S  
Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          KD K N+ +++MPM+I
Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367


>gi|291536989|emb|CBL10101.1| DNA polymerase III, beta subunit [Roseburia intestinalis M50/1]
          Length = 370

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++L  +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I   
Sbjct: 1   MKLICSKSNLLYGVNIVSKAVPTRTTMAILECILIDASANEIKLTANDMELGIETKIEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        E +   +  I+   + F +      +F  
Sbjct: 61  IAERGVIALDAKIFSEIVRKLPDSDV---TIETDASFKTTITCEKAKFNIVGKSGDDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F I E DLK+  V+ DGHR
Sbjct: 118 IPYIERNEPIVMSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEENDLKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++    +    ++VP K + E+ +IL    +  V + L+++ I    E+ ++  
Sbjct: 176 ISIRNIELKNNYS-HKKVVVPGKTLQEVSKILPGSAEDEVSIFLTDNHIVFEFENTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++    + ++++N   L   +DR +++      + + ++++   + + 
Sbjct: 235 RLIEGEYFKIEQMLSSDYETKVKINKRELLDCIDRATLLVKEGDKKPIIMNITDGTMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++      + I FN K+ ++ +  I      ++EV   + +  +  F
Sbjct: 295 I-NSFIGSMNEDIDIAKEGKDILIGFNPKFFIDALRVID-----EEEVTLYMVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++    Y+++P+
Sbjct: 349 I----------KDDEGTFIYLILPV 363


>gi|238855507|ref|ZP_04645812.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3]
 gi|260665211|ref|ZP_05866060.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US]
 gi|282931533|ref|ZP_06337032.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
 gi|313472765|ref|ZP_07813253.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153]
 gi|238831873|gb|EEQ24205.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 269-3]
 gi|239529254|gb|EEQ68255.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 1153]
 gi|260560948|gb|EEX26923.1| DNA polymerase III, beta subunit [Lactobacillus jensenii SJ-7A-US]
 gi|281304340|gb|EFA96443.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
          Length = 376

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 99/392 (25%), Positives = 185/392 (47%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  L+ L +  R I  + TIP+   + +  ++  L +  S  +I I   IP S
Sbjct: 1   MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEDLILTGSDTDISIEIKIPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +I++KL       F  E + G +  IS  +S F +     +
Sbjct: 61  EDLKVESTGSIVLPARFFNEIIKKLPGKD---FNFEVKEGLQTQISSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +FE++    + ++  T+FA++T+E R  L G+ F       K+ AVAT
Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVF--NQAKIKAVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +D+         +I+P K++ E+ RI+  +D  V V+  ++++   I ++S
Sbjct: 176 DSHRLSQRVIDLENGPQVETDLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNIS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P ++      +  +L QA+DRVS+++ + R   VKL+L   + 
Sbjct: 236 FYSRLLEGTYPDTDRLLPTNSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTQNG 295

Query: 294 KLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              +  D+P++G   E  +        ++I FN  YL   +        + D V+     
Sbjct: 296 VAQLEGDSPEIGTVEEKPLAKQLTGQNLEISFNPDYLQAALRA-----SITDTVIMNFTE 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +    +D        V+   ++ P+R
Sbjct: 351 ALRPFTVVPGKED--------VDFIQLITPVR 374


>gi|150014894|ref|YP_001307148.1| DNA polymerase III subunit beta [Clostridium beijerinckii NCIMB
           8052]
 gi|149901359|gb|ABR32192.1| DNA polymerase III, beta subunit [Clostridium beijerinckii NCIMB
           8052]
          Length = 366

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 198/386 (51%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T E+  ILE +    + I  K+T+P+   + + AN+  + +  S  ++ I   + A+
Sbjct: 1   MIFTCEKQKILEGISIVQKAITGKSTMPILEGIYINANNSTITLIGSDMDVSIQTLVDAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI + A +  +I+RKL +        EN+L   + I+   S F +     +EFP 
Sbjct: 61  IMEEGSIVIDAKIFGEIIRKLPNSTIRIETMENQL---IKITCEKSIFDVVYMNTNEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        +  ++LKN+++ T FA+A +E R  L GI F +  ++L L  VA DG+R
Sbjct: 118 LPEINENLKISVNQNILKNMIKGTSFAIAQDETRPILQGILFEVRNKNLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I     +++P K + E+ +IL   D  V ++ + + I  N++   +  R
Sbjct: 176 LAIKSEFLDTDID--IEVVIPGKTLNEVSKILEDIDEIVDITFTNNHILFNLKRTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++G+F NY++++P  +   + VN   L+ A++R S+M+       +KL L  D L +T 
Sbjct: 234 LLEGKFINYKSLLPQEHKLFVNVNRQELQNAIERASLMAKDGNTNLIKLDLHQDNLVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  + +++      ++I FN KYLL+++ N+      D+EVV ++ S  S   I
Sbjct: 294 -NSQLGKVRDEISIKLQGDEIEIAFNSKYLLDVLKNME-----DNEVVMKMTSGISPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + +         NA Y+++P+R+
Sbjct: 348 EEHNNE---------NAKYLVLPVRL 364


>gi|328675184|gb|AEB27859.1| DNA polymerase III beta subunit [Francisella cf. novicida 3523]
          Length = 367

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 119/387 (30%), Positives = 216/387 (55%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L + + I F        +V I   +S F L S     +P 
Sbjct: 61  CNTSIKLALNADKIYNIVRSLNENSMIDFRVNE---NKVTIVSNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            +NPD  KA + + V YN+  M+ICFNYKYLL+II+ +S     ++ +   LD+ N S  
Sbjct: 296 ANNPDNEKAEDKIEVQYNDQAMEICFNYKYLLDIINVLS-----EETMTIYLDNPNMSAL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +          KD K N+ +++MPM+I
Sbjct: 351 V----------KDEKDNSLFIIMPMKI 367


>gi|325955723|ref|YP_004286333.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC]
 gi|325332288|gb|ADZ06196.1| DNA polymerase III subunit beta [Lactobacillus acidophilus 30SC]
          Length = 376

 Score =  301 bits (771), Expect = 1e-79,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I    S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSESSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  N + +K  AVAT
Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI++  D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL+DG +P+   +IP      +  +   L  A++R S+++ + R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMNFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    +D        V+   ++ P+R
Sbjct: 351 PLRPFVINPDKED--------VDFVQLITPVR 374


>gi|210614349|ref|ZP_03290168.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787]
 gi|210150693|gb|EEA81702.1| hypothetical protein CLONEX_02382 [Clostridium nexile DSM 1787]
          Length = 369

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 186/385 (48%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++ + +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIICTKSNLAKGVNIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        E++   +  I+   + F + +    +F  
Sbjct: 61  IIQKGVIAIDAKIFSEIVRKLPDNEI---TIESDSNLQTMITCEKAKFSISAKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK L+ +T F++A  +    + G  F I+E  LK+  V+ DGHR
Sbjct: 118 LPYIEKAESITLSQFTLKELIRQTIFSIADNDSNKLMTGELFEIDENILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ + ++     +   ++VP K + E+ +ILS + DS+V +S +++ +    ++  +  
Sbjct: 176 ISIRKTELTKNY-QSRKVVVPGKTLMEVSKILSGEADSTVCLSFTDNHVVFEFDNTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++++N   L   +DR +++      + + +++  + + + 
Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVKINKKELLSCIDRATLLVKEGDKKPIIINIMDEVMELR 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +      + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 295 IKSQ-LGSMNEEIMISKEGKDLLIGFNPKFLIDALRVIE-----DEEVTIYLMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D K +  Y+++P+
Sbjct: 349 IR----------DEKESYVYLILPV 363


>gi|256851675|ref|ZP_05557063.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260661608|ref|ZP_05862520.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN]
 gi|282934241|ref|ZP_06339518.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
 gi|256615633|gb|EEU20822.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 27-2-CHN]
 gi|260547665|gb|EEX23643.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 115-3-CHN]
 gi|281301715|gb|EFA93982.1| DNA polymerase III, beta subunit [Lactobacillus jensenii 208-1]
          Length = 376

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 98/392 (25%), Positives = 182/392 (46%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  L+ L +  R I  + TIP+   + +  ++  L +  S  +I I   IP S
Sbjct: 1   MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +I++KL       F  E + G +  IS  +S F +     +
Sbjct: 61  ADLTVESTGSIVLPARFFNEIIKKLPGKD---FSFEVKEGLQTQISSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +FE++    + ++  T+FA++T+E R  L G+ F       K+ AVAT
Sbjct: 118 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVF--NQAKIKAVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +D+         +I+P K++ E+ RI+  +D  V V+  ++++   I ++S
Sbjct: 176 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293
              RL++G +P+   ++P ++      +  +L QA+DRVS+++ + R   VKL+L   + 
Sbjct: 236 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              +  D+P++G   E           ++I FN  YL   +        + D V+     
Sbjct: 296 VAQLEGDSPEIGTVEEKPWAKQITGQNLEISFNPDYLQAALRA-----SITDTVIMNFTE 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D +           ++ P+R
Sbjct: 351 PLRPFTVVPGKEDVE--------FIQLITPVR 374


>gi|221632726|ref|YP_002521947.1| DNA polymerase III subunit beta [Thermomicrobium roseum DSM 5159]
 gi|221156728|gb|ACM05855.1| DNA polymerase III, beta subunit [Thermomicrobium roseum DSM 5159]
          Length = 380

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 91/393 (23%), Positives = 172/393 (43%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++   +S++   L    R + R++T+PV  +VLL A++  L I A+  EI ++ + PA 
Sbjct: 1   MQLRCPQSELERALHQVSRAVARRSTLPVLSNVLLAADEANLRITATNLEIALSVSFPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G ++V A +  + +  L     I          ++ ++ G S   +   P  +FPS
Sbjct: 61  VTDPGQLSVRADVFTEFIGSLPKQDVILSGTTG--SNDLRVTCGTSKARIPGIPAEDFPS 118

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   +  +    L+  + +  FA AT++ R  L G+       +L L   A DG 
Sbjct: 119 LPRIGDQPPTATVPVEGLREAISQVVFAAATDDSRPVLAGVLLEFRGTELTL--AAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237
           RL+V  + +    A   +IIVP +A+GE+ R+L   + +V++ ++ +  ++      L  
Sbjct: 177 RLSVRSLALQQPAATDLAIIVPARALGELARVLGDGEETVQLLVTPNRSQLLARSGRLEF 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------- 290
             RLIDG FP ++ +IP      + V+  +   A  R  I +    + VKL +       
Sbjct: 237 LSRLIDGTFPEFRQIIPKQWRTRVTVDRESFLAAARRAKIFAQSNNEVVKLHIAPGDSEL 296

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L ++    D G   + +    +     I FN +YL +++    +      E+   +
Sbjct: 297 DPGSLTVSAQAADAGDTEDILPARVDGPEATIAFNGRYLTDVLSVTKAT-----EIALEM 351

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            + N++   R    +S           +V+MPM
Sbjct: 352 TTPNAAGVFRPVGDES---------FVHVVMPM 375


>gi|326329130|ref|ZP_08195458.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium
           Broad-1]
 gi|325953017|gb|EGD45029.1| DNA polymerase III, beta subunit [Nocardioidaceae bacterium
           Broad-1]
          Length = 379

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 166/395 (42%), Gaps = 28/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V+R    + +  A R +  + + PV   +L++A    L +     E      + A 
Sbjct: 1   MKFRVDRDVFADAVAWAARSLPVRPSTPVLSGLLIEAGHEGLVLSTFDYETSARATLSAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   VS  LL DI R L     +    +   G  V+++ G + F LQ+ P  ++P+
Sbjct: 61  VADEGKALVSGKLLADICRSLP-AKPVEMVTD---GARVSLTCGSARFSLQTMPVEDYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        + S +  + V +   A   +++   L G+   I    + L  +ATD  R
Sbjct: 117 LPEMPTAAG-TVKSELFAHAVAQAVTAAGRDDMLPVLTGVRLEIEGSTISL--LATDRFR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLN--- 231
           L+  E++          + +VP K +G+  + L+S  S V ++LS     E  I      
Sbjct: 174 LSHRELEWNPATPDESLAALVPAKVLGDTAKSLTSG-SEVTLALSTTGTGEGIIGFEGAA 232

Query: 232 -IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                  + RL+DGEFP  +++ P  +     V+  +L ++V RV++++  R  AV++  
Sbjct: 233 AGGVRRTTTRLLDGEFPKVRSLFPAEHLTTALVDKASLVESVKRVALVA-ERNTAVQMVF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L +   + D  +A ES+        +   FN ++LL+ +  I      +  V    
Sbjct: 292 EDGVLTLDAGSGDEAQASESIEATMEGEGLTTGFNPQFLLDGLQAID-----EQVVELAF 346

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   V I GK  +       +    Y+LMP R+
Sbjct: 347 TQAPKPVVISGKPAEGG----EEPGFRYLLMPRRL 377


>gi|256848505|ref|ZP_05553947.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis
           101-4-CHN]
 gi|256714772|gb|EEU29751.1| DNA polymerase III, beta subunit [Lactobacillus coleohominis
           101-4-CHN]
          Length = 378

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 176/395 (44%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ RS     L +  R I  K TIP+   V +   D  + +  S  +I I   + A 
Sbjct: 1   MKFTINRSVFANQLNNVLRAISSKTTIPILTGVKIVVEDQQVILTGSNADITIQTTLSAE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +I++KL D        E   G +  IS G + F +   
Sbjct: 61  NGKTALTIEEPGAIVLPARFFSEIIKKLPDQDV---TIEVHDGFQAKISSGTAEFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E +   +    + +L+++VE+T  A++ +E R  L GI   + ++  +L A
Sbjct: 118 DANNYPHLPEIQSASTITAVADLLRDVVEQTRIAVSKQESRPILTGIHMRLADD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA  +V +     +   +++P  ++ E+ R+++     +++ ++E+++    +
Sbjct: 176 VATDSHRLAQRKVTVPTN-GQSYDVVIPGNSMTELARMIADVKGDIQIQIAENQVLFQFD 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           +     RL++G +P    +IP + D  + +   N   A+DR S++S       VKLSL  
Sbjct: 235 NALFYSRLLEGMYPETSRLIPDTADTTIELEAGNFLAAIDRASLLSHQGHNNVVKLSLDP 294

Query: 293 --DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             +   ++ D+ D+G   E ++        ++I FN  Y+ + + +     V+       
Sbjct: 295 DTNTAKISGDSADVGNVEEDVSFEKLTGNKLEISFNPDYMSDALKSFGQASVL-----LS 349

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S      +   +         + N   ++ P+R
Sbjct: 350 FTSPLRPFTLVPTED--------QENFVQLITPVR 376


>gi|307717719|ref|YP_003873251.1| DNA polymerase III subunit beta [Spirochaeta thermophila DSM 6192]
 gi|306531444|gb|ADN00978.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6192]
          Length = 367

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 179/385 (46%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T ER ++++ +  A  II  KN + +  +VLL A D  L I+A+  ++    + P  
Sbjct: 1   MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSRLTIRATDLKVGFETSSPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV    L  I+R L  GA + F  +      +       NF L++    ++P 
Sbjct: 61  VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  S L  ++  T FA++ +E RY++NG+F    E+ L +  VATDG R
Sbjct: 120 MP-LHGDSYFSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E  +   +     +I+P K +    ++L   +  V V++ E  + L    + +S  
Sbjct: 177 LAYIEKGVDGGVPDFNGVIIPPKILHLARKLLP-GEGMVDVAIGEKHVFLRYGDVYLSSN 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G FP Y+ VIP        +      +A+ RVS++   + + V L++    L ++ +
Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVSSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E +   Y +  + I  NY YLLE +  +      +++V       + ++ +R
Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVM-----TEEQVEIAFTEPSRAITVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +   F+++MPM++
Sbjct: 351 PV---------PEREFFHIVMPMQL 366


>gi|68535064|ref|YP_249769.1| DNA polymerase III subunit beta [Corynebacterium jeikeium K411]
 gi|260579562|ref|ZP_05847433.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC
           43734]
 gi|68262663|emb|CAI36151.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium K411]
 gi|258602333|gb|EEW15639.1| DNA polymerase III, beta subunit [Corynebacterium jeikeium ATCC
           43734]
          Length = 394

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 90/398 (22%), Positives = 169/398 (42%), Gaps = 28/398 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D    LG   R +  K T P+   V++ A+D  LE+     E+     I A V+
Sbjct: 8   FIVPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFDREVSTRVRINAEVN 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L  DIV  L +      F     GT V +  G S F L +    ++P   
Sbjct: 68  EPGKILVAGKLASDIVGSLPNKPINIEFD----GTTVILKTGKSKFELPAMTIEDYPVLP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           E   V       ++    + +   A   ++    L G+   I+ E+  +  VATD  RLA
Sbjct: 124 ELPEVTGTIDP-NLFAESISQVAVAAGRDDTLPMLTGVHVEIDGEN--VIMVATDRFRLA 180

Query: 183 VAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLNIE 233
           V       AQ      +++P + + +  R +   +   +++++        +  + ++ E
Sbjct: 181 VRSFQWNPAQADAQAKLLIPARTLADTARSMDPNNTDPIEIAVGSGEDIGADGLLGISTE 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S   + RL+D EFP ++ ++P ++     V    L++A+ RVSI++  R   +++    +
Sbjct: 241 SRHTTTRLLDAEFPKFRPLLPKTHTALASVEIAPLQEAIKRVSIVA-ERNSQIRMDFKDN 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + ++    D+G A E+++  +   P+ I FN  YL E +  I +       VVF    +
Sbjct: 300 TVTLSAGGSDVGSATETLDCAFAGEPLVIAFNPSYLKEGLAAIHT-----PRVVFGFTMA 354

Query: 354 NSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
           +    +     +             + +  Y+LMP+R+
Sbjct: 355 SRPAILLPDPGELPEADAEGNFATPETDFTYLLMPVRL 392



 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 24/181 (13%), Positives = 67/181 (37%), Gaps = 16/181 (8%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
             SF +      + +     ++ ++  +  L G+    ++E L+L        R     V
Sbjct: 5   AVSFIVPKDDFASALGWVARSLPSKPTQPILRGVMIVADDEGLELSGFD----REVSTRV 60

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR-LIDGE 245
            I A++ +   I+V  K   +I+  L +K   + +    + + L        +  +   +
Sbjct: 61  RINAEVNEPGKILVAGKLASDIVGSLPNK--PINIEFDGTTVILKTGKSKFELPAMTIED 118

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTVD 300
           +P    V+P   +    ++     +++ +V++ +           V + +  + + M   
Sbjct: 119 YP----VLPELPEVTGTIDPNLFAESISQVAVAAGRDDTLPMLTGVHVEIDGENVIMVAT 174

Query: 301 N 301
           +
Sbjct: 175 D 175


>gi|293380892|ref|ZP_06626928.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1]
 gi|290922565|gb|EFD99531.1| DNA polymerase III, beta subunit [Lactobacillus crispatus 214-1]
          Length = 376

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 172/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 61  DDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  + +  K+ AVAT
Sbjct: 118 NYPRLPEISDAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++ + R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDVENQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 SAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    +D +           ++ P+R
Sbjct: 351 PLRPFIINPDKEDIE--------FVQLITPVR 374


>gi|315037232|ref|YP_004030800.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112]
 gi|312275365|gb|ADQ58005.1| DNA polymerase III, beta chain [Lactobacillus amylovorus GRL 1112]
 gi|327182551|gb|AEA30998.1| DNA polymerase III subunit beta [Lactobacillus amylovorus GRL 1118]
          Length = 376

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 172/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I    S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSESSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F  N + +K  AVAT
Sbjct: 118 NYPRLPEISDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI++  D  VKV   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQSETDLIIPGKSLQELARIIAEADPEVKVCPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL+DG +P+   +IP      +  +   L  A++R S+++ + R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVGNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMNFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    +D        V+   ++ P+R
Sbjct: 351 PLRPFVINPDKED--------VDFVQLITPVR 374


>gi|258506997|ref|YP_003169748.1| DNA polymerase III beta subunit [Lactobacillus rhamnosus GG]
 gi|257146924|emb|CAR85897.1| DNA polymerase III, beta subunit [Lactobacillus rhamnosus GG]
 gi|259648367|dbj|BAI40529.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           rhamnosus GG]
          Length = 379

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 172/395 (43%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+ RS  L+ L    R I  K TIP+   + +  ND  L +  S  +I I   I A 
Sbjct: 1   MKFTITRSTFLKTLNDVSRAISTKTTIPILTGLKIVLNDTGLVLTGSDADISIESTINAA 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G I + A    +IV++L +       K+N    +  I+ G S F ++  
Sbjct: 61  DESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQTVITSGASEFTIRGE 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E     +  + + VL+ L+ +T  A++ +E R  L G+   I  +  +L A
Sbjct: 118 DANNYPRLPEITADEALSVPADVLRQLINQTVIAVSNQESRPILTGVHLTITGD--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + A       II+P K++ E+ R+L    + +++ ++E+++     
Sbjct: 176 VATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTKIEIRIAENQVLFVFG 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSL 290
             +   RL++G +P+   +IP S++ +   +   L  ++ R S++S      V    L++
Sbjct: 236 QTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLNI 295

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              +  +  ++PD+G   E ++        ++I FN  Y+ + +       +  D     
Sbjct: 296 GEQRATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQGFGQTAIEVD----- 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +      +   +         K     ++ P+R
Sbjct: 351 FTAPLRPFTLVPTED--------KEKFIQLITPVR 377


>gi|197302270|ref|ZP_03167329.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC
           29176]
 gi|197298701|gb|EDY33242.1| hypothetical protein RUMLAC_00997 [Ruminococcus lactaris ATCC
           29176]
          Length = 369

 Score =  300 bits (770), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 182/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I  +I   
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVVKLTANDMELGIETSIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I ++A +  +IVRKL D        E E   +  I+   + F + +    +F  
Sbjct: 61  IVERGIIALNAKIFSEIVRKLPDSEV---TIETESDNQALITCEKAKFSIAAQSGDDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK  + +T F++A  +    + G  F I E  LK+  V+ DGHR
Sbjct: 118 LPAIESNDFITVSEFTLKEAIRQTIFSIADNDTNKMMTGELFEITENVLKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++D+     +   +IVP K + EI +I+  + ++ V++S +++ I    +   +  
Sbjct: 176 ISIRKIDLK-DSYEPRKVIVPGKTLQEISKIIGGEAEAEVQISFTKNHIVFEFDRTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++RVN   L   +DR +++      + + + +  D + M 
Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVRVNKRELLDCIDRATLLIKEGDKKPIIIDIKDDAMQMM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E +    +   + I FN K+L++ +  I      D+EV     ++ +  F
Sbjct: 295 IKSQ-IGSMDEVILCTKDGKDLMIGFNPKFLIDALRVID-----DEEVDLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD + +  Y+++P+
Sbjct: 349 I----------KDEEQSYIYLILPV 363


>gi|313199779|ref|YP_004038437.1| DNA polymerase III subunit beta [Methylovorus sp. MP688]
 gi|312439095|gb|ADQ83201.1| DNA polymerase III, beta subunit [Methylovorus sp. MP688]
          Length = 341

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 105/361 (29%), Positives = 191/361 (52%), Gaps = 22/361 (6%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
           +P+  ++LL+A D  + + A+  E++I+ A+   V    S T+SA  L DI R L + A+
Sbjct: 1   MPILSNLLLEAKDEKIVLTATDLEMQISLALQTPVGGELSTTISAKKLLDICRSLPENAE 60

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS--FELASSVLKNLVERT 144
           I+        + + +  G S F LQ+ P +++P   +          +    LK L ++ 
Sbjct: 61  ITMATAE---SRIQVKTGKSRFNLQTLPAADYPVMTKATGTTYTVVTIDQKSLKRLFKQV 117

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FAMA ++IRYYLNG+ F +N    +L  V TDGHRL+    ++ AQ  +   +I+PRK 
Sbjct: 118 EFAMAQQDIRYYLNGLLFEVNGN--RLNVVGTDGHRLSFTSTEL-AQSYEKQELILPRKT 174

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           V E++++L   +  V + ++  +++ +   + +  ++IDG+FP+Y  VIP  +     V+
Sbjct: 175 VIELIKLLDDSEEDVTIEIASGQVNFSFGDIKLISKVIDGKFPDYTRVIPVGHKNSFNVD 234

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
              +  A+ R SI+S+ + + +++ L SD L +   N +  +A E + + Y    +DI F
Sbjct: 235 RMTILLAMQRASILSNEKYRGIRMVLGSDSLRLISTNSEQEEAEEELEIAYAGDSLDIGF 294

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N  Y++++++N++      D V F    +NSS  +   D ++           YV+MPMR
Sbjct: 295 NVTYMIDVLNNVNC-----DSVTFSFADANSSCLVTVADDET---------YKYVVMPMR 340

Query: 385 I 385
           I
Sbjct: 341 I 341


>gi|81251077|gb|ABB69879.1| DNA polymerase III beta chain [Nitrosospira sp. TYM9]
          Length = 369

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 201/389 (51%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT ++  
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKREKISFIATDLEIQITTSVED 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                   S+TV A  L DI+R L D  Q++          ++   G S F LQ+ P  +
Sbjct: 61  ANPAGEERSVTVPAKKLQDILRALPDKVQVTLET---GENRLHAKAGKSRFNLQTLPVED 117

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E      +    LK+++    +AMA ++IR YLNG+   + +  LK+  VAT
Sbjct: 118 FPKFPESTEPQAKITVQQKELKHILSMVQYAMAQQDIRCYLNGLLLLMEDSYLKV--VAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + + A   K   +I+PRK V E+ R+L+  D  V +   ++++     ++ 
Sbjct: 176 DGHRLAFALMLLAAPQEKKE-VILPRKVVLELSRLLNDVDEPVTMEFLQNQVRFTFSNVI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP   +K+  +N   L Q + R SI+S+ + + V+L L+S  L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPEGYEKQFDINRLLLLQTLQRASILSNEKFRGVRLILTSGNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + Y    +DI FN  YLL+++++++      + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYEGEALDIGFNITYLLDVLNHLNC-----ETVRCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I               +  YV+MPMRI
Sbjct: 350 ALISIP---------GNNDFKYVVMPMRI 369


>gi|56961784|ref|YP_173506.1| DNA polymerase III subunit beta [Bacillus clausii KSM-K16]
 gi|56908018|dbj|BAD62545.1| DNA-directed DNA polymerase III beta subunit DnaN [Bacillus clausii
           KSM-K16]
          Length = 380

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 94/397 (23%), Positives = 178/397 (44%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + +ER+ ++  + H  + +  + TIP+   + L A+   L +  S  ++ I   IP  
Sbjct: 1   MHVIIERNRMVHDVQHVAKAVSSRTTIPILTGIKLVADANGLTLTGSDSDLSIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + +    +IV+KL          +    T   I  G S F L  
Sbjct: 61  ENEREIVQIEQAGSIVLQSKYFAEIVKKLPGETIEIQVHDQFAAT---IRSGSSVFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + +    F L   +L+N++ +T FA++T+E R  L G+      E+ +L 
Sbjct: 118 LDPEEYPRLPQLKEDLIFSLPQDMLRNIIRQTVFAVSTQETRPVLTGVNIET--ENGELI 175

Query: 173 AVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+ +  I +Q    +  ++++P K++ E+ +IL       ++ ++E++I  
Sbjct: 176 CTATDSHRLAMRKTKIDSQDEGLEFKNVVIPGKSLQELSKILEDTSDLAEIVVTENQILF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--L 288
            + +L    RL++G++P    +IP        V    L   ++R  ++S      V    
Sbjct: 236 KLGNLLFFSRLLEGKYPVTSGMIPTQFKTSFVVKTKELVHTLERAMLLSREAKNNVINVK 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +L  +++ +T  + ++GK  E M    +    + I FN K +L+ +  + S     DEV 
Sbjct: 296 TLGDNQIEITSTSQEIGKVTEKMATDQFEGDEIRISFNGKNILDALKVVDS-----DEVQ 350

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             L  + S   IR  D D         +  ++  P+R
Sbjct: 351 IFLTGAMSPFVIRPIDSD---------HYLHLFSPVR 378


>gi|295694689|ref|YP_003587927.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912]
 gi|295410291|gb|ADG04783.1| DNA polymerase III, beta subunit [Bacillus tusciae DSM 2912]
          Length = 375

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 184/392 (46%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+I V +  +   L    R +   +T+P+   + L A+   L + A+  EI +   + A 
Sbjct: 1   MRIHVHQQSLAAALQQVQRAVSAHSTMPILGGIKLTADTDSLRLIATNQEIAVETYLAAD 60

Query: 60  ----SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
               S+++ GSI + A    ++VRKL D          +    V I+   + F L  F  
Sbjct: 61  SDTLSIEMPGSIVLPARYFVELVRKLPDPWVHLTV---QQPYSVQITSAQAAFLLHGFDP 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            EFP   +      F + S  LK+ + +T  A+A EE R  L G+    + + +    + 
Sbjct: 118 EEFPRLPQIASDQPFLIHSDNLKDAIRQTVVAIAAEETRPVLTGLCMKFDADSITF--IG 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA  ++ +         I +VP K++ E+ R+L   D+ V ++++++ + ++ ++
Sbjct: 176 TDSHRLASRKLFLQGGPEGASEIAVVPGKSIHELARLLPEDDTPVTMTIADNTLLVSSDT 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
                RL++G++P+   +IP +    + +       A++R  +++   + Q V+L L SD
Sbjct: 236 TRFFTRLLEGQYPDTSKIIPTTFKTRIHIRRDPFASALERALLIAREMQNQVVRLQLQSD 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++  + D+G+  E + +  ++   + + FN KY+L+ + +   +++  D        
Sbjct: 296 RIELSAHSHDVGRVSEQVPLDQFSGDALTLAFNGKYMLDAVRSFDGEQLTVD-----FTG 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + S + +R  D              ++++P+R
Sbjct: 351 TMSPMILRPTDGQE---------YLHLVLPVR 373


>gi|213964020|ref|ZP_03392264.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno]
 gi|213953352|gb|EEB64690.1| DNA polymerase III, beta subunit [Capnocytophaga sputigena Capno]
          Length = 384

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 176/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 11  MKFIVSSSYLLKKLQVFGGVINSNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 70

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL DI++   +       KEN +   + IS    N+ L      EFP 
Sbjct: 71  SDSQGSIAVSAKLLIDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 127

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   VL   V++T FA   +++R  ++GI F  +E  L    V TD H+
Sbjct: 128 PVALPEASKVTMLGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 185

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    +  +       I+P+K +  +  IL+  ++ V V  +ES    + + +    R
Sbjct: 186 L-VKYERLDIKANDAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICR 244

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY  VIP  N  +L +N +    +++R+S+ S+     V+L ++   L ++ +
Sbjct: 245 LIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKVAGSSLVISAE 304

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   K  E     Y    ++I FN K+L E+I+N+ S     DE++  +   N +  I
Sbjct: 305 DIDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDS-----DEILIEMSLPNRAGLI 359

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       + MP+ +
Sbjct: 360 TPVD-----GLDEGEKVLMLAMPIML 380


>gi|302864510|ref|YP_003833147.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|315500820|ref|YP_004079707.1| DNA polymerase iii, beta subunit [Micromonospora sp. L5]
 gi|302567369|gb|ADL43571.1| DNA polymerase III, beta subunit [Micromonospora aurantiaca ATCC
           27029]
 gi|315407439|gb|ADU05556.1| DNA polymerase III, beta subunit [Micromonospora sp. L5]
          Length = 377

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 172/392 (43%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   V+L+  DG L++     E+     +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQVSGFDYEVSSQVTVEVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++P+
Sbjct: 61  GDADGAALVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        + ++   + V +   A   +E    + G+   ++     +  +ATD +R
Sbjct: 117 LPEMPESAG-TVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGS--TMAMLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           LA+ E++      ++  + +VP + + +  + L      V ++LS     E  I  +  +
Sbjct: 174 LALREMEWNPDDPEISLNALVPARTLHDTAKALGPLGGHVTMALSSGGAGEGMIGFSGGT 233

Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              + RL+DG  +P  +++ P  ++ E RV    L + V RV++++  R   V LS S+D
Sbjct: 234 RRTTSRLLDGANYPPVRSLFPADHNAEARVAVAALIEVVKRVALVA-ERTTPVLLSFSAD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +  +A E+M   ++  P+ I FN +YL++ + N+ +        + R   +
Sbjct: 293 GLVVEAGGTEEARASEAMEATFSGEPLTIGFNPQYLIDGLANLGAQH-----ALLRFVDA 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I    +D +          Y++MP+R+
Sbjct: 348 FKPAVISPAGEDGEVIP----GYRYLIMPIRV 375


>gi|260584258|ref|ZP_05852005.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC
           700633]
 gi|260157776|gb|EEW92845.1| DNA polymerase III, beta subunit [Granulicatella elegans ATCC
           700633]
          Length = 385

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 101/396 (25%), Positives = 179/396 (45%), Gaps = 27/396 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   L+ L    R I  K TIP+   + L  +   + +  S  E+ I   +P  
Sbjct: 1   MKFSINRQAFLKNLADVQRAIPSKTTIPILTGIKLVVSQEGITLTGSDSEVSIEIFLPVE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GSI + A    +IV+KL      +F  E     +  I+ G + F L   
Sbjct: 61  HEELQLSIVETGSIVLPARFFGEIVKKLPQN---TFTLETNEQLQATITAGSAAFTLNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P   E E  +   L   + + ++ +T  A++T E R  L GI   I    LK  A
Sbjct: 118 SAHDYPQLPEVEKDHVLTLPVPLFRQVILQTSIAVSTAESRPILTGIHMVIANNQLK--A 175

Query: 174 VATDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRL+   + +       A    I +P K + E+ RI+   + ++  +++E+++  
Sbjct: 176 VATDSHRLSQRIIPLEMPETSNALTFEITLPGKTLIELSRIIDGLE-TIDFAITENQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLS 289
             E+LS   RL++G +P+   +I    +  + V  ++L  AVDR S+MS   +     LS
Sbjct: 235 QTETLSFYSRLLEGRYPDTDRLINDQFNTAITVVASDLVAAVDRASLMSHTDKNNIATLS 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++ +++ +T ++P++GK  E + V  Y    +D+ FN  YL + +    S      E   
Sbjct: 295 INENRILLTGNSPEIGKVEEEITVENYEGASLDVSFNPDYLKDALRLFGSS-----EATI 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   +N    +  KD  S    D   +   ++ P+R
Sbjct: 350 QFLEANRPFTLTLKDNHS----DIPYSFIQLVTPVR 381


>gi|28209865|ref|NP_780809.1| DNA polymerase III subunit beta [Clostridium tetani E88]
 gi|28202300|gb|AAO34746.1| DNA polymerase III, beta chain [Clostridium tetani E88]
          Length = 367

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 104/386 (26%), Positives = 192/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S + E +  A + +  K+T+P+   + ++A +  L +  S  ++ I   + A 
Sbjct: 1   MKIFCNKSILQESISIAQKAVTGKSTMPILQGIFIKAENNSLTLIGSDIDLSIETIMDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI + + +  +I+RKL +       K+N     + I    S F L      EFP 
Sbjct: 61  VIEEGSIVIDSKIFGEIIRKLPNDVIEITSKDN---NIIEIKCQKSKFNLVHMSADEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +  ++LKN+V  T FA + EE R  L G+ F I ++ L L  VA DG+R
Sbjct: 118 LPKINENIIFSIPEALLKNMVRGTIFATSQEETRPILTGLLFEIKDKILNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV    I ++     S ++P K + E+ +ILS  D  V ++ + + I  +I    +  R
Sbjct: 176 LAVKSEIIDSE--NSISAVIPGKTLNEVSKILSENDEKVNITFTPNHILFSIGKTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDKLCMTV 299
           L++G+F NY+++IP   + ++        + ++R S+M      + +KL+++ D + +T 
Sbjct: 234 LLEGDFINYKSIIPKEYNLKVIAKRIKFLECIERASLMGKDGNTSLIKLNITDDSIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +G   E M +      ++I FN KYL++++  +      +DE++  L SS S   I
Sbjct: 294 -NSQLGMVREEMGIILQGEDLEIAFNSKYLIDVLKVME-----EDEIILELSSSISPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + K+ +         +  Y+++P+R+
Sbjct: 348 KNKEAN---------DCTYLVLPVRL 364


>gi|332668534|ref|YP_004451541.1| DNA polymerase III subunit beta [Cellulomonas fimi ATCC 484]
 gi|332337571|gb|AEE44154.1| DNA polymerase III, beta subunit [Cellulomonas fimi ATCC 484]
          Length = 376

 Score =  300 bits (769), Expect = 2e-79,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 168/390 (43%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+  V+R  + + +    R +  +  +PV   V ++A+  G +++ +   E+     IPA
Sbjct: 1   MRFRVDRDVLADAVTWTARSLPTRPPVPVLAGVRIEADSTGTIQLSSFDYEVSARSQIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VS  LL +I R L D            GT+V ++ G S F L + P  ++P
Sbjct: 61  DVAEPGTVLVSGRLLAEISRALPDKP----VDVVLDGTKVVVTCGASRFTLLTMPVEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S           +    L + V +   A + ++    L G+   I  E  K+  +ATD +
Sbjct: 117 SLPVMPATAG-TVDGDELTHAVAQVSVAASRDDTLPLLTGVRVEIEGE--KVTLLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSES----RIHLNIES 234
           RLA+ E+        + ++ +V  + + +  + L S   SV V+LS       I      
Sbjct: 174 RLALRELTWKPSAPDISTVALVRARTLSDAAKSLGSA-GSVTVALSTGAGVDLIGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L+DG++P  + + P        V+   L +A  RV++++  R   ++L+ +  +
Sbjct: 233 RQTTSLLVDGDYPAVRRLFPDETPIHAIVSTHALAEAAKRVALVA-ERNTPIRLAFTQGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++        + + FN ++LL+ +  + +       V       N
Sbjct: 292 VVLDAGQGDDAQASEALEATLVGDDITVAFNPQFLLDGLGALDTT-----FVRLSFTHPN 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V   G++       D+K    Y+L+P+R
Sbjct: 347 KPVEFTGQES---LEGDDKQEYRYLLVPIR 373


>gi|297582340|ref|YP_003698120.1| DNA polymerase III subunit beta [Bacillus selenitireducens MLS10]
 gi|297140797|gb|ADH97554.1| DNA polymerase III, beta subunit [Bacillus selenitireducens MLS10]
          Length = 380

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 88/378 (23%), Positives = 176/378 (46%), Gaps = 23/378 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T++R   ++ +    + I  + TI +   + + A+   + +  S  ++ I   IP  
Sbjct: 1   MKFTIQRDAFVQSVADVSKAISPRTTIQILTGIKIVADQDGITLTGSDSDLSIESFIPKE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  ++   GSI + A    D+++KL + +      +        I+ G S F +  
Sbjct: 61  KDGEELVNIQEEGSIVLQARFFGDMIKKLPETSIEVAVND---QFIAQITSGGSVFNING 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E    F +  ++LK L+ +T FA+++ E R  L GI +H+  ED  L 
Sbjct: 118 IDPDEYPRLPDVEEADLFRMPKNLLKTLIRQTAFAVSSVETRPILTGIHWHL--EDSVLT 175

Query: 173 AVATDGHRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
             ATD HRLA+    +          ++++P K + E+ +IL+  D  ++V ++ ++I  
Sbjct: 176 CTATDSHRLAMRMAKVDDNENNLSFSNVVIPGKTLTELNKILNDTDELLEVVVAGNQILF 235

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL- 288
             +   +  RL++G +P  +N+IP  +   +++    L  A++R  ++S   +   V + 
Sbjct: 236 KGDYFLLYSRLLEGNYPATKNMIPTGSKTSVKLETKRLLDAIERALLLSREGKNNVVHVK 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +L S +L +T   P++GK  E +  + Y    + I FN K L++ +  + +      EV 
Sbjct: 296 NLESGELEITSVTPEVGKVTEHVTTMSYEGDELKISFNGKNLIDALRVMEAS-----EVH 350

Query: 348 FRLDSSNSSVFIRGKDKD 365
                + S   ++  D+D
Sbjct: 351 INFTGAMSPFVLKPIDED 368


>gi|315640355|ref|ZP_07895471.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus
           DSM 15952]
 gi|315483891|gb|EFU74371.1| DNA-directed DNA polymerase III beta subunit [Enterococcus italicus
           DSM 15952]
          Length = 376

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 96/393 (24%), Positives = 181/393 (46%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T+ R   ++ L    R I  K TIP+   V +Q +   L +  S  +I I   + A 
Sbjct: 1   MKVTLHRGTFIQELQTVQRAISSKTTIPILTGVKIQLSHQGLTLTGSNADISIETFLSAT 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    +IVR+L +        EN    +V I+ G ++F +   
Sbjct: 61  NEKANMQIEQTGAIVLQARFFGEIVRRLPEETFTLEVIEN---NQVLITSGKASFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E      +   VL  L+  T FA++  E R  L G+   +     +L A
Sbjct: 118 DADNYPHLPVVETNQQLTIPVEVLNQLISETVFAVSQHESRPILTGVHMTLKNN--QLVA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + + +Q +    I++P K++ E+ R L+  D  + +S+ E+++    E
Sbjct: 176 VATDSHRLSQRTIPLESQ-SDQIDIVIPGKSLTELSRSLAETDEQIDISIMENQVLFETE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +   L  A++R S++S   R   VKLS++ 
Sbjct: 235 TMKFYSRLLEGTYPDTNRLIPTSFNTEIEFSVPALLAAIERASLLSHEGRNNIVKLSITD 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             + +  ++P++GK  ES++    +  P+DI FN  Y+   +         D  +  +  
Sbjct: 295 QDVILYGNSPEVGKVEESLSYDKVSGDPLDISFNPDYMKAALRAFG-----DTTIAIKFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+     +   +         + +   ++ P+R
Sbjct: 350 SAIRPFTLEPTE--------GQASFIQLITPVR 374


>gi|239916573|ref|YP_002956131.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665]
 gi|281414963|ref|ZP_06246705.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665]
 gi|239837780|gb|ACS29577.1| DNA polymerase III, beta subunit [Micrococcus luteus NCTC 2665]
          Length = 374

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 165/386 (42%), Gaps = 19/386 (4%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K TVER  + + +  A R +  +  +PV   +L+ A  G++ I +   E      I A V
Sbjct: 5   KFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEADV 64

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G + VS  LL DIVR L              G +V ++   S F L + P  ++P+ 
Sbjct: 65  ETAGQVLVSGRLLNDIVRSLPQAQVTVELD----GGKVLVTCRSSRFSLATMPVGDYPAL 120

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E        +  +   + V +   A + ++    L  +   I  +   +  +ATD +RL
Sbjct: 121 PELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGD--TITFLATDRYRL 177

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           A+ E+        +  S+++  + + E+ + L S  D  + +  +   +         + 
Sbjct: 178 AMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTTS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+DGE+P  +++ P S+  +  V+   L +A  RV++++  R  A+++  +  ++ +  
Sbjct: 238 VLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLDA 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
              D   A ES+        + + FN  YL E +  +        +V F   S+     +
Sbjct: 297 GTGDDASANESVPCTLEGEDITVAFNPSYLSEGLAVVD-----QPQVRFAFTSAPKPALL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G +++     D      Y++MP+RI
Sbjct: 352 TGVNQEDGVVSD----YRYLVMPVRI 373


>gi|330813296|ref|YP_004357535.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp.
           IMCC9063]
 gi|327486391|gb|AEA80796.1| DNA polymerase III beta subunit [Candidatus Pelagibacter sp.
           IMCC9063]
          Length = 371

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 127/387 (32%), Positives = 220/387 (56%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R  IL+ L H   ++E+KNT+P+  +VL++A D  ++I A+  +I IT  I A 
Sbjct: 1   MEIKIDRDIILKCLNHIQGVVEKKNTLPILANVLIEAFDNKIQISATDLDIIITEKIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T +A +LYD++RKL  G+ I    +N+    + +  G S+F L   P SEFP 
Sbjct: 61  VIKEGSTTTTAQVLYDLIRKLPAGSGIHLNLQNDK--RLKLISGKSDFNLTCLPASEFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL-KLCAVATDGH 179
            ++       E+ S  L  L+ +T F+++ +E R+YLNGI+ H  EED  KL AVATDGH
Sbjct: 119 LEDSIESDYLEVKSKYLLKLLNKTKFSISNDETRHYLNGIYLHKPEEDNSKLIAVATDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RL+  ++ +     K   +I+P+K + EI+ I+S + D+ +K+    S+I   I+ + + 
Sbjct: 179 RLSKTQITVDEN-KKFHPVILPKKTIFEIINIISDEPDTPIKILSVRSKIKFIIKDIVLI 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG+FP+Y+ VIP    KE+  N  +   AVDR+  +S+ R   +K+++ + K+   
Sbjct: 238 SKVIDGKFPDYEKVIPSDTRKEVLANVADFISAVDRIKSLSADRKGVIKINIENHKIRFF 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G+ IE ++  Y    ++I FN  YL++I + I      D+ +  +   + S + 
Sbjct: 298 INDTSSGEGIEEISAVYEGDNLEIGFNSGYLMDIANCIQ-----DENITLKPKDATSPII 352

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +            ++ YV+MPMR+
Sbjct: 353 IKDQ---------KDPDSTYVVMPMRV 370


>gi|311742164|ref|ZP_07715974.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum
           DSM 15272]
 gi|311314657|gb|EFQ84564.1| DNA-directed DNA polymerase III beta subunit [Aeromicrobium marinum
           DSM 15272]
          Length = 380

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 165/395 (41%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R    + +    R +  + ++PV   +L++A+   L +     E      +PA 
Sbjct: 1   MKFRIDRDTFADAVAWTARSLPLRPSVPVLAGLLVEASAEGLTLSGFDYETSTRATLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   VS  LL +IV+ L +            GT+VN++ G + F LQ+ P  E+P 
Sbjct: 61  VSDEGRALVSGRLLSEIVKSLPNKP----IDVALDGTKVNLTCGSARFALQTMPVEEYPR 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  + + +    V++   A   +E+   L GI   +    + L  +ATD  R
Sbjct: 117 LPQMP-TATGTVKADLFATAVQQAGAAAGRDEMLPLLTGIRLELEGSTISL--MATDRFR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNI-- 232
            ++ ++D   + +      +VP K + E  R L S    + V++S  +     I      
Sbjct: 174 ASLRDLDWYPEASDLSAQALVPAKVLNETARSLQSG-GDITVAVSSGQTGDGLIGFEGVV 232

Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
              +   + RL++G+FP  + +     +    VN     ++V RVS+++  R   V+L+ 
Sbjct: 233 GNGTRRTTTRLLEGDFPRVRQLFQAQAETVAYVNTQEFVESVKRVSLVA-ERNTPVRLTF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +   L +   + D  +A ES+        + I FN  YLLE +  +S     D  V    
Sbjct: 292 ADGVLLLEAGSGDEAQASESLEATIEGNDISIGFNPGYLLEGLGVMS-----DPVVHLSF 346

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   I G  +      +      Y++MP+R+
Sbjct: 347 TQHTKPAAISGVGE---TGAEPDGAFRYLIMPVRL 378


>gi|258513368|ref|YP_003189590.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM
           771]
 gi|257777073|gb|ACV60967.1| DNA polymerase III, beta subunit [Desulfotomaculum acetoxidans DSM
           771]
          Length = 367

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 103/385 (26%), Positives = 199/385 (51%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    + ++L  +    + +  K+ +P+   +L +A D  L ++A+  E+ I   +P  
Sbjct: 1   MKFISTKDNLLYAIQTVQKAVSPKSLLPILSGILFKAYDNTLIVRATDLELGIECFLPVK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + +  + DI+R+L D   +  F+ N+    + I + +S   +  F   EFP 
Sbjct: 61  VIETGEIVLPSKYIIDIIRRLPD--TVIEFESNDYLNSITIKYKNSQANIHGFAADEFPM 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                  ++F +++S+ K ++ +T FA  T+E R    GI F I E++ K+  VATD HR
Sbjct: 119 LPPLNDGFTFLISTSIFKKMLRQTIFATGTDENRPVFTGIHFQILEQEFKM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+    +     ++P IIVP K + E+L+IL+S  D  +K++++E++I   +  +++  
Sbjct: 177 LAMITEHLPLIKQELPGIIVPGKTLSELLKILNSTQDEEIKITVTENQIFFLLNEINIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI G++PNY +VIP     ++++  ++  Q+V+R S++SS   Q +++   +    +  
Sbjct: 237 RLIKGQYPNYHHVIPKDIIAKIKIKLSDFIQSVERASLLSSSISQHIRIDCENSDFIVIS 296

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G   E + V++    + I FN KYL++ +  + S     +E+   L    +   +
Sbjct: 297 SNNEAGHIYEEIPVFFEGEALQIYFNSKYLMDALKAVDS-----EEIYLELSGPINPCLL 351

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           R +D+          N   +L+P+R
Sbjct: 352 RTEDR----------NYLSILLPVR 366


>gi|331086958|ref|ZP_08336034.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
 gi|330409619|gb|EGG89058.1| DNA polymerase III [Lachnospiraceae bacterium 9_1_43BFAA]
          Length = 369

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A    +++ A+  E+ I   I  +
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D   I    E     +  I+   + F +      +F  
Sbjct: 61  ILQKGIIALDAKIFSEIVRKLPDNEVI---IETNSNLQTLITCEKAKFNISGKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++ +T F+++  +    ++G  F +++  LK+  V+ DGHR
Sbjct: 118 LPYIEKKDCITLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  +  +   ++VP K + EI +ILS + +S V +  + + I     +  +  
Sbjct: 176 ISIRKIELK-ESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++R+N   L   +DR +++      + + ++++ + + + 
Sbjct: 235 RLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQLK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +  +   + I FN K+L++ +  I      D+EV     ++ +  F
Sbjct: 295 IQSQ-IGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD + +  Y+++P+
Sbjct: 349 I----------KDEEQSYIYLILPV 363


>gi|213966240|ref|ZP_03394424.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46]
 gi|213951092|gb|EEB62490.1| DNA polymerase III, beta subunit [Corynebacterium amycolatum SK46]
          Length = 396

 Score =  300 bits (768), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 86/401 (21%), Positives = 165/401 (41%), Gaps = 30/401 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I   + D+   +    R +  + T P+   ++  A+D  L++     E+     I A V
Sbjct: 7   RIRAAKDDLAGAVSWVARNLPARPTQPILRGMIFLADDNGLQLAGYDYEVSTQIRISAEV 66

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   V+  L+ DIV KL +      F     GT+V +  G S F L S    ++P  
Sbjct: 67  DEPGRFAVNGKLVSDIVSKLPNKQVEMHFD----GTKVIVRCGSSRFELPSLTLEDYPQL 122

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E     +  + +++L   + +   A   +E    L GI       ++ L   ATD  RL
Sbjct: 123 PEAP-AATGTVDAALLAEAIGQVAVAAGKDESLPMLTGIRMETEGNEVTL--AATDRFRL 179

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR----------IHL 230
           AV   +          +++P K   E  R L  +    V ++  +            + +
Sbjct: 180 AVRSFEWEQVPEGETKLLIPAKTFAETARTLDTTSSEPVTLAFGDGSDDREVGSEGLLAI 239

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             +    + RL+D EFP ++ ++P  +          L+ A+ RVS+M+      +++  
Sbjct: 240 LADPRRTTTRLLDAEFPKFRPLLPKQHSSMAVARVDQLQDAIRRVSLMA-DHGAQIRMDF 298

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S  ++ ++    ++G A E++   +   P+ I FN +YLLE +  + S       V+   
Sbjct: 299 SDGQVVLSAHGDEVGHAEETVACNFYGEPLLIAFNPQYLLEGLSAVRSH-----RVLLGF 353

Query: 351 DSSNSS-VFIRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
              +   + I   +   +  +D      + +  Y+LMP+R+
Sbjct: 354 TQPSRPAILIPEPEAIPELGEDGFYPTPETDFTYLLMPVRL 394


>gi|226326147|ref|ZP_03801665.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758]
 gi|225205689|gb|EEG88043.1| hypothetical protein COPCOM_03966 [Coprococcus comes ATCC 27758]
          Length = 369

 Score =  299 bits (767), Expect = 3e-79,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD+++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIRCLKSDLVKGVSIVSKAVPTKTTMPILECILIDATTDIIKLTANDMELGIETVIRGQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G I + A +  DIVRKL D   +    E+ +  +  I+   + F +      +F  
Sbjct: 61  IDEKGMIALDARIFSDIVRKLPDNEIVI---ESGVNFQTLITCEKAKFNISGKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F +N + LK+  V+ DGHR
Sbjct: 118 LPYIERENPVSISQFTLKEVIRQTIFSIADNDSNKLMTGELFDMNGDILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  +  +   I+VP K + E+ +ILS + DS V++  + + I    +   +  
Sbjct: 176 ISIRKIELK-ESYEPKKIVVPGKTLIEVSKILSGEADSEVRLYFTANHIVFEFDDTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++    + ++R+N   L   +DR +++      + + +++  + + + 
Sbjct: 235 RLIEGEYFRIEQMLSNDYETKVRINKRELLNCIDRATLLVKEGDKKPIIINIQDEMMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + + + G   E + +      + I FN K+L++ +  I      D+E      ++ +  F
Sbjct: 295 IKS-EKGTMDEEIMITKEGKDLLIGFNPKFLIDALRVID-----DEEADLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD   +  Y+++P+
Sbjct: 349 I----------KDEGESYVYLILPV 363


>gi|256820579|ref|YP_003141858.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271]
 gi|256582162|gb|ACU93297.1| DNA polymerase III, beta subunit [Capnocytophaga ochracea DSM 7271]
          Length = 374

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 106/386 (27%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 1   MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL DI++   +       KEN +   + IS    N+ L      EFP 
Sbjct: 61  SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   VL   V++T FA   +++R  ++GI F  +E  L    V TD H+
Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    +  +  +    I+P+K +  +  IL+  ++ V V  +ES    + + +    R
Sbjct: 176 L-VKYERLDIKANEAADFIMPKKPLNILKGILAGSETEVTVEYNESNAKFSFDDMEFICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY  VIP  N  +L +N +    +++R+S+ S+     V+L ++   L ++ +
Sbjct: 235 LIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   K  E     Y    ++I FN K+L E+I+N+ S     DE++  +   N +  I
Sbjct: 295 DVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDS-----DEILIEMSLPNRAGLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       + MP+ +
Sbjct: 350 TPVD-----GLDEGEKVLMLAMPIML 370


>gi|225575692|ref|ZP_03784302.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM
           10507]
 gi|225037096|gb|EEG47342.1| hypothetical protein RUMHYD_03785 [Blautia hydrogenotrophica DSM
           10507]
          Length = 369

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 183/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++ + +  A + +  K T+P+   +L+ A    ++   +  E+ I   +  +
Sbjct: 1   MKIICSKSNLSKGVNIALKAVPSKTTMPILECILIDATANQIKFVTNDMELGIETMVDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +I+RKL D   ++   +++L T   I+   + F +      +F  
Sbjct: 61  ISEKGMIALDAKIFSEIIRKLPDN-DVTIQTDDKLNT--LITCEKAKFNIPGKSGEDFVY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK ++ +T F++A  E    + G  F I +  LK+  V+ DGHR
Sbjct: 118 LPMIERDASITLSQFTLKEMIRQTIFSIAVNENNKLMTGELFEIKDNYLKI--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A+  +++         IIVP K + EI +ILS + D  V +  +++ I    +   +  
Sbjct: 176 IAIRRMELAKDYEDR-KIIVPGKTLNEISKILSGEVDDQVTIYFTKNHILFEFDQTLVLS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + +L++N       +DR +++      + + ++++   + +T
Sbjct: 235 RLIEGEYFRIDQMLSSDYETKLKINKKEFLSCIDRATLLVREGDKKPIIINITDTSMVLT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  MG   E +++      + I FN K+L++ +  I      D+E+   L +  +  F
Sbjct: 295 IDSA-MGSMDEEIDIVKEGKDILIGFNPKFLIDALRVID-----DEEITIYLVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+K +  Y+++P+
Sbjct: 349 I----------KDDKGSYTYLILPV 363


>gi|315223688|ref|ZP_07865538.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga
           ochracea F0287]
 gi|314946263|gb|EFS98262.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga
           ochracea F0287]
          Length = 374

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 1   MKFIVSSSYLLKKLQVFGGVINNNNTMPILDNFLFELSTNSLTISASDLETTVRGTLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI VSA LL DI++   +       KEN +   + IS    N+ L      EFP 
Sbjct: 61  SDSEGSIAVSAKLLTDILKTFSEQPLTFLVKENNV---IEISSTTGNYTLAYLDGEEFPR 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +   VL   V++T FA   +++R  ++GI F  +E  L    V TD H+
Sbjct: 118 PVALPEASKVTMIGDVLATAVQKTIFAAGNDDLRPTMSGILFQFSENGLTF--VGTDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V    +  +  +    I+P+K +  +  IL+  ++ V +  +ES    + + +    R
Sbjct: 176 L-VKYERLDIKANEAADFIMPKKPLNILKGILAGSETEVTIEYNESNAKFSFDDMEFICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY  VIP  N  +L +N +    +++R+S+ S+     V+L ++   L ++ +
Sbjct: 235 LIDGKYPNYDAVIPKENPNKLILNRSQFYSSINRLSLFSNKTTHQVRLKIAGSSLVISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   K  E     Y    ++I FN K+L E+I+N+ S     DE++  +   N +  I
Sbjct: 295 DVDYSNKGEERFTCNYQGDDLEIGFNSKFLKEMINNLDS-----DEILIEMSLPNRAGLI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       + MP+ +
Sbjct: 350 TPVD-----GLDEGEKVLMLAMPIML 370


>gi|256831257|ref|YP_003159984.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603]
 gi|256684788|gb|ACV07681.1| DNA polymerase III, beta subunit [Jonesia denitrificans DSM 20603]
          Length = 376

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 170/389 (43%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  VER  + E +    R +  +   PV   V ++A  +G++++ +   E+   G IPA
Sbjct: 1   MKFRVERDVLTEAVTWTARTLPARPPAPVLSGVRIEATQEGVVKLASFDYEVSARGEIPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G+I VS  LL +I + L              GT+V++  G S F L + P  E+P
Sbjct: 61  EVTEPGTILVSGRLLAEIAKALPHKPVDFTVD----GTKVSVVCGASRFSLLTMPVEEYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      +      S +    V +   A + ++    L G+   I  E  K+  +ATD +
Sbjct: 117 TLPTMPELTGVVDGSELSA-AVSQVTVAASRDDTLPLLTGVRIEIEGE--KVTLLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSS-KDSSVKVSLSES--RIHLNIESL 235
           RLA+ E+        M ++ +V  + + ++ + L    D +V +S+ E    I       
Sbjct: 174 RLALREMTWRPSAPDMSTVALVRARTLNDVSKSLGPVGDVNVALSVGEGVDLIGFEAGGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +  L+DG++P+ + + P        V    L  A  RV++++  R   ++L+ S  ++
Sbjct: 234 QTTSLLVDGDYPHVRRLFPDETPIHAVVATQPLIDAARRVALVA-ERNTPIRLNFSEGQV 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D  +A E +        + + FN ++LL+ ++ + +     D V       N 
Sbjct: 293 VLDAGQGDDAQASEVLESTLVGEDISVAFNPQFLLDGLNALGT-----DFVRLSFTHPNK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            V   G++     + ++  +  Y+L+P+R
Sbjct: 348 PVEFTGQES---LDGEDSKHYRYLLVPIR 373


>gi|325663384|ref|ZP_08151834.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
 gi|325470838|gb|EGC74068.1| DNA polymerase III [Lachnospiraceae bacterium 4_1_37FAA]
          Length = 369

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A    +++ A+  E+ I   I  +
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDTIKLTANDMELGIETTIEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D   I    E     +  I+   + F +      +F  
Sbjct: 61  ILQKGIIALDAKIFSEIVRKLPDNEVI---IETNSNLQTLITCEKAKFNISGKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++ +T F+++  +    ++G  F +++  LK+  V+ DGHR
Sbjct: 118 LPYIEKKDCITLSEFTLKEVIRQTIFSISDMDSNKLMSGELFEVDQNILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  +  +   ++VP K + EI +ILS + +S V +  + + I     +  +  
Sbjct: 176 ISIRKIELK-ESYEPRKVVVPGKTLQEISKILSGETESEVTIYFTNNHIVFEFSNTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++R+N   L   +DR +++      + + ++++ + + + 
Sbjct: 235 RLIEGEYFRIDQMLSNDYETKVRINKKELLSCIDRATLLVKEGDKKPIIINITDESMQLK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +  +   + I FN K+L++ +  I      D+EV     ++ +  F
Sbjct: 295 IQSQ-IGSMNEEIMITKDGKDLLIGFNPKFLIDALRVID-----DEEVSLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD + +  Y+++P+
Sbjct: 349 I----------KDEEQSYIYLILPV 363


>gi|315187336|gb|EFU21092.1| DNA polymerase III, beta subunit [Spirochaeta thermophila DSM 6578]
          Length = 367

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 178/385 (46%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T ER ++++ +  A  II  KN + +  +VLL A D  L I+A+  ++    + P  
Sbjct: 1   MKFTCERDELIKDISLAQDIIASKNALSILANVLLVAKDSKLTIRATDLKVGFETSSPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV    L  I+R L  GA + F  +      +       NF L++    ++P 
Sbjct: 61  VSREGATTVFCDKLLGILRSLPSGA-VEFELDEHDSLHIRTVFKKINFTLKTISPDKYPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                    F +  S L  ++  T FA++ +E RY++NG+F    E+ L +  VATDG R
Sbjct: 120 MP-LHGDSYFSIPQSDLLEMISHTVFAVSDDETRYFMNGVFVEKGEKGLTM--VATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E ++   +     +I+P K +    ++L   +  V  ++ E  + L    + +S  
Sbjct: 177 LAYIEKEVDGGVPDFNGVIIPPKILHLARKLLP-GEGMVDFAIGEKHVFLRYGDVYLSSN 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G FP Y+ VIP        +      +A+ RVS++   + + V L++    L +  +
Sbjct: 236 LIEGNFPAYRRVIPEQQAHSFTLQREEFLEALRRVSLLVEQKSRRVFLTVKEGVLVVRSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E +   Y +  + I  NY YLLE +  +      +++V       + ++ +R
Sbjct: 296 ETDLGVAQEEIPAQYADEEVTIAVNYLYLLEPLKVM-----TEEQVEIAFTEPSRAITVR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                       +   F+++MPM++
Sbjct: 351 PV---------PEREFFHIVMPMQL 366


>gi|163784003|ref|ZP_02178965.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159880725|gb|EDP74267.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 365

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 93/383 (24%), Positives = 187/383 (48%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T++++ + ++L  A    E+K+ +P+  + LL+A DG L ++ +  E+ +  ++ A 
Sbjct: 1   MELTIDKTTLQDVLRKAISATEKKSALPILSNFLLEAKDGKLIVEGTDLEVHVKISVFAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V+A  L DI R L          +    + + I  G + + L +    ++P 
Sbjct: 61  VEEEGKACVNAKKLTDIARLLPSETVHIKTDD----SSLKIKSGKTKYSLPTVAPEDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +F ++ + L+N + +T +A + EE RY L G  F     +  +  VATDGHR
Sbjct: 117 MYPFPEDTAFLISGADLQNAINKTLYAASKEESRYALQGDLF--KSRNNHIDVVATDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  ++   Q+     +++P+K++ E+ ++L+  +  V+++ +E       +   +  R
Sbjct: 175 LALYIIEREGQLDTNVEVVIPQKSLNELRKLLTGAE-DVEMAATEQYAFFKTKEWILMTR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FP+Y  VIP     E+ ++     +AV RVS +     + +K +L  + L +   
Sbjct: 234 LLEGAFPDYTQVIPDEFSIEIILDKKETLEAVKRVSAVVEGDTKPIKFTLKPNVLELRSF 293

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + + G+A++ + V Y      I FN KY++E I     + V DD+   +  + NS   + 
Sbjct: 294 SQEYGEAVDEIEVQYEGEEFTIGFNAKYIIEAI-----EVVDDDKFYMKFTNPNSQTMVE 348

Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383
             + +             ++MPM
Sbjct: 349 PIENN---------RYKAIIMPM 362


>gi|294338442|emb|CAZ86768.1| DNA polymerase III, beta subunit [Thiomonas sp. 3As]
          Length = 371

 Score =  299 bits (767), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 121/390 (31%), Positives = 208/390 (53%), Gaps = 27/390 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++T  R ++L+LLG    I+ER+ T+P+  +VL+Q N        S  E++I      +V
Sbjct: 3   RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFITSDMEVQIRLQAGGAV 62

Query: 62  D---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                  +ITV+   L DI+R    G     + +     ++ +    S F LQ+ P  +F
Sbjct: 63  QTSAEDAAITVNMRKLLDILRAASPGNVTLEWSDG----KMTVRAAKSRFSLQTLPAEDF 118

Query: 119 PSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           P  +       ++  L   +LK L+  THFAMA  +IRYYLNG+ +  + + + L  VAT
Sbjct: 119 PLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--VAT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235
           DGHR+ +A   +   + +   II+PRK V E+ R+LS +D   + ++L+ ++  L ++ L
Sbjct: 177 DGHRMTLATAPLEKAVERRE-IILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDGL 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + +LI+G+FP+YQ V+P  +   L+V  T L+ A+ RV+I+++ + + V+++L    L
Sbjct: 236 EFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGLL 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T  N +  +A E ++V Y    ++I FN  YL++ + N++S     D++   L   NS
Sbjct: 296 RLTSINAEQEEAQEEIDVDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDGNS 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S      D+          N  YV+MPMRI
Sbjct: 351 SALFTMPDEP---------NFKYVVMPMRI 371


>gi|270308396|ref|YP_003330454.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS]
 gi|270154288|gb|ACZ62126.1| DNA polymerase III, beta subunit [Dehalococcoides sp. VS]
          Length = 378

 Score =  299 bits (766), Expect = 4e-79,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 173/392 (44%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS TV A LL + V  L +         N     +NI        +      +FP 
Sbjct: 61  IEEEGSTTVPAKLLTEFVSSLPNDKIELNL--NAKSKALNIKCARFEARITGVDAKDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S ++     +  V    FA AT+E R  L G+        L L   A DG R
Sbjct: 119 VPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTL--AAADGFR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237
           LAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ +
Sbjct: 177 LAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------S 291
             +L+ G FP Y  +IP S   ++ V+      A    +I +      V+L +      +
Sbjct: 237 VSQLVQGNFPQYSQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNT 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             KL ++  + ++G     ++         I FN KYLL+++  + +      +V   + 
Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S +S   I+    D         N  +V+MPM
Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|227550641|ref|ZP_03980690.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257896288|ref|ZP_05675941.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|293379369|ref|ZP_06625513.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1]
 gi|227180242|gb|EEI61214.1| DNA-directed DNA polymerase [Enterococcus faecium TX1330]
 gi|257832853|gb|EEV59274.1| DNA polymerase subunit III [Enterococcus faecium Com12]
 gi|292641892|gb|EFF60058.1| DNA polymerase III, beta subunit [Enterococcus faecium PC4.1]
          Length = 376

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 99/393 (25%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ R+  ++ L    R I  K TIP+   V +      L +  S  +I I   +   
Sbjct: 1   MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + A    +I+R+L +        EN+   +V I+ G +NF +   
Sbjct: 61  NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     +L   VL  L+  T FA++  E R  L G+ F ++  D  L A
Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +  Q A    I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLSQRVIPVE-QTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +  +   A++R S++S   R   V+LS+  
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  ES++    N  P++I FN  Y+   +         D  +  +  
Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASNGDPLEISFNPDYMKAALRAFG-----DMSIKVKFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+     +   +          V    ++ P+R
Sbjct: 350 SAIRPFTLEPTED--------GVQFIQLITPVR 374


>gi|327475233|gb|AEA77211.1| DNA polymerase III beta subunit [Bacillus sp. 15.4]
          Length = 361

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 89/378 (23%), Positives = 175/378 (46%), Gaps = 30/378 (7%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--------ASVDVCGSITV 69
            + +  + TIP+   + + A D  + +  S  +I I   IP          V   G I +
Sbjct: 1   MKAVTSRTTIPILTGIKIIATDEGVTLTGSDSDISIESFIPTEEDGNEIVEVIEKGGIVL 60

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
            A    +IV+KL          E +   +  I  G + F L      E+P   + E   +
Sbjct: 61  QAKFFSEIVKKLPMDTV---EIEVQNHLQTVIRSGKAEFNLNGLDPEEYPHLPQIEEGNA 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F++ + +LK +V +T FA++T E R  L G+ + +  E+ +L  +ATD HRLA+ +  + 
Sbjct: 118 FKVPTDLLKTMVRQTVFAVSTSETRPILTGVNWRV--ENGELSCIATDSHRLAMRKAPLE 175

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
           +      +I++P K++ E+ +IL      V++ ++++++    + L    RL++G +P+ 
Sbjct: 176 SDTGNEYNIVIPGKSLTELSKILDDNSEPVEIVITDNQVLFKAKHLLFFSRLLEGNYPDT 235

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKL-SLSSDKLCMTVDNPDMGKA 307
             +IP  +  EL +      QA+DR S+++   R   VKL ++ S  + ++ + P++GK 
Sbjct: 236 SRLIPNESKTELVLATKEFLQAIDRASLLAREGRNNVVKLSTVESGVIEISSNTPEIGKV 295

Query: 308 IESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           IE +         + I F+ KY+++ +  +   E+  D        +     I+    DS
Sbjct: 296 IEQVQSQSNEGEELKISFSAKYMMDALKALEGTEIHID-----FTGAMRPFVIKPLHDDS 350

Query: 367 KNNKDNKVNAFYVLMPMR 384
                       +++P+R
Sbjct: 351 I---------LQLILPVR 359



 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 19/143 (13%), Positives = 39/143 (27%), Gaps = 2/143 (1%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V    +  ++      +    T P+   V  +  +G L   A+          P   D
Sbjct: 118 FKVPTDLLKTMVRQTVFAVSTSETRPILTGVNWRVENGELSCIATDSHRLAMRKAPLESD 177

Query: 63  V--CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                +I +    L ++ + L D ++       +        H      L      +   
Sbjct: 178 TGNEYNIVIPGKSLTELSKILDDNSEPVEIVITDNQVLFKAKHLLFFSRLLEGNYPDTSR 237

Query: 121 TKEEEYVYSFELASSVLKNLVER 143
               E      LA+      ++R
Sbjct: 238 LIPNESKTELVLATKEFLQAIDR 260


>gi|57234032|ref|YP_181940.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195]
 gi|57224480|gb|AAW39537.1| DNA polymerase III, beta subunit [Dehalococcoides ethenogenes 195]
          Length = 378

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 173/392 (44%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS TV A LL + V  L +         N     +NI        +      +FP 
Sbjct: 61  IEEEGSTTVPAKLLTEFVSSLPNDKIELNL--NAKSKALNIKCARFEARITGVDAKDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S ++     +  V    FA AT+E R  L G+        L L   A DG R
Sbjct: 119 VPKVENGISTKINVEAFRQAVSEVVFASATDESRPVLTGVNAEFEGSTLTL--AAADGFR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237
           LAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ +
Sbjct: 177 LAVYKLPLLEAVKTATKVIIPARTLGELSRLASMDEEEALMINVDTAKSQILFRLKNIEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL------S 291
             +L+ G FP Y  +IP S   ++ V+      A    +I +      V+L +      +
Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTKVVVDANQFLMATRTATIFARDGGGIVRLMMNPGGNNT 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             KL ++  + ++G     ++         I FN KYLL+++  + +      +V   + 
Sbjct: 297 PGKLTISARSEEVGDNTGELDAVVQGEEAKIAFNGKYLLDVLGVLKAQ-----QVSLEVT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S +S   I+    D         N  +V+MPM
Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|297205284|ref|ZP_06922680.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           jensenii JV-V16]
 gi|297149862|gb|EFH30159.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           jensenii JV-V16]
          Length = 386

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/392 (25%), Positives = 182/392 (46%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  L+ L +  R I  + TIP+   + +  ++  L +  S  +I I   IP S
Sbjct: 11  MKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKIPVS 70

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +I++KL       F  E + G +  IS  +S F +     +
Sbjct: 71  ADLTVESTGSIVLPARFFNEIIKKLPGKD---FSFEVKEGLQTQISSENSEFTINGLDAN 127

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +FE++    + ++  T+FA++T+E R  L G+ F       K+ AVAT
Sbjct: 128 NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVF--NQAKIKAVAT 185

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +D+         +I+P K++ E+ RI+  +D  V V+  ++++   I ++S
Sbjct: 186 DSHRLSQRIIDLENGPQVEADLIIPGKSLVELSRIIGDQDPKVTVNPGDNQVLFVIGNVS 245

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293
              RL++G +P+   ++P ++      +  +L QA+DRVS+++ + R   VKL+L   + 
Sbjct: 246 FYSRLLEGTYPDTDRLLPTTSTTTAEFDRASLSQALDRVSLLTHAGRNNVVKLTLDTENG 305

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              +  D+P++G   E           ++I FN  YL   +        + D V+     
Sbjct: 306 VAQLEGDSPEIGTVEEKPWAKQITGQNLEISFNPDYLQAALRA-----SITDTVIMNFTE 360

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D +           ++ P+R
Sbjct: 361 PLRPFTVVPGKEDVE--------FIQLITPVR 384



 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 30/183 (16%), Positives = 71/183 (38%), Gaps = 8/183 (4%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           E +  F +  ++  + +     A+++      L+GI   ++ E+L L    TD       
Sbjct: 8   EDIMKFTINRNLFLDNLNNVMRAISSRATIPILSGIKVDLSNEELVLTGSDTDISIEIKI 67

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
            V     +    SI++P +   EI++ L  KD S +V     +  ++ E+   ++  +D 
Sbjct: 68  PVSADLTVESTGSIVLPARFFNEIIKKLPGKDFSFEVKEG-LQTQISSENSEFTINGLDA 126

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSDKLCMTV 299
              NY  +   +++    ++    R+ ++  +   S +        V    +  K+    
Sbjct: 127 N--NYPRLPEIASETAFEISGKTFREIINETNFAVSTQESRPILTGVHFVFNQAKIKAVA 184

Query: 300 DNP 302
            + 
Sbjct: 185 TDS 187


>gi|315605506|ref|ZP_07880543.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
 gi|315312773|gb|EFU60853.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 180 str. F0310]
          Length = 378

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 173/392 (44%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A+   L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKADGDELTLSSFDYEVSANSHIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + VS  LL DI + L              G +VN+  G S+F L   P  E+P 
Sbjct: 61  VDEAGEVLVSGRLLADISKSLPSKP----VSVELDGQKVNLVCGSSHFTLAVMPLDEYPL 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +        +S++    V +   A + ++    L G+   IN   + L  +ATD +R
Sbjct: 117 LPAQPTGIGAIDSSTLS-QAVSQVSIAASRDDTLPLLTGVRIEINGPSITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232
           LA+ E+D       +  I +V  + + ++ + ++S  + V+V LS        S I    
Sbjct: 174 LAMRELDWEPTDTSIEEIALVKARILQDVAKSMTSG-AKVEVGLSGETQPGASSLIGFTA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                +  L+DG++P  + + P S   +  V+   L +AV R+S+++  R  +V+L+ + 
Sbjct: 233 SGRRTTSTLMDGDYPAVRRLFPESTPIQAVVDRHALLEAVKRMSLVA-ERKTSVRLAFTE 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +L +     D  +A E++    +   +   FN ++L++ +  + +     D V F    
Sbjct: 292 GQLVLEAGQGDNAQASEAIEASLHGDDISTAFNPQFLIDGLQVLDT-----DFVRFGFTH 346

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     I G+    K ++       Y+LMP+R
Sbjct: 347 STKPAVITGQ---RKVDEGEVTQFRYLLMPIR 375


>gi|257888094|ref|ZP_05667747.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733]
 gi|257899272|ref|ZP_05678925.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|293572719|ref|ZP_06683683.1| DNA polymerase III, beta subunit [Enterococcus faecium E980]
 gi|257824148|gb|EEV51080.1| DNA polymerase subunit III [Enterococcus faecium 1,141,733]
 gi|257837184|gb|EEV62258.1| DNA polymerase subunit III [Enterococcus faecium Com15]
 gi|291607211|gb|EFF36569.1| DNA polymerase III, beta subunit [Enterococcus faecium E980]
          Length = 376

 Score =  299 bits (766), Expect = 5e-79,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ R+  ++ L    R I  K TIP+   V +      L +  S  +I I   +   
Sbjct: 1   MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + A    +I+R+L +        EN+   +V I+ G +NF +   
Sbjct: 61  NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     +L   VL  L+  T FA++  E R  L G+ F ++  D  L A
Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILS--DHSLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +  Q A    I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLSQRVIPVE-QTADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +  +   A++R S++S   R   V+LS+  
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  ES++    +  P++I FN  Y+   +         D  +  +  
Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLEISFNPDYMKAALRAFG-----DMSIKVKFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+     +   +          V    ++ P+R
Sbjct: 350 SAIRPFTLEPTED--------GVQFIQLITPVR 374


>gi|86606304|ref|YP_475067.1| DNA polymerase III subunit beta [Synechococcus sp. JA-3-3Ab]
 gi|86554846|gb|ABC99804.1| DNA polymerase III, beta subunit [Synechococcus sp. JA-3-3Ab]
          Length = 454

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 87/417 (20%), Positives = 176/417 (42%), Gaps = 50/417 (11%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIPAS 60
            T E++++   L    R +  +  +PV  +VL++A      + + A    + I     A 
Sbjct: 51  FTCEQAELSHHLAAVSRAVASRPALPVLANVLVEASAEAQRVALTAFDLNLGIRSEFEAE 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  T+ A LL DIV +L  G              V ++     + L+  P  E+P+
Sbjct: 111 VKGSGRTTLPAKLLSDIVSRLPSGPIGLSQVPESAA--VTLTSAAGQYQLRGMPAEEYPT 168

Query: 121 TKEEEY-------------VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NE 166
             E                    EL    L   + +T FA + ++ +  L G+   +   
Sbjct: 169 LPEIAPRTADADAEEESLAAQILELPIESLLQGIGQTLFAASGDDTKQVLTGVHVKLLTG 228

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQIAKMP------SIIVPRKAVGEILRILSSKD--SS 218
           +  +L   ATDGHRLA+ +V+       +          +P + + E+ RIL ++   S+
Sbjct: 229 DPPRLEFAATDGHRLAIVQVEAEGIPVDLAAGGTKLDFTIPARTLREVERILGAQTAASA 288

Query: 219 VKVSLSESRIHLNIE--------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           V++    S++   +            ++ RL++G++P+Y  +IP   ++ + +    L +
Sbjct: 289 VELRFDRSQVQFILPPGAGSAQCQQRITSRLLEGQYPDYNRLIPRQFERHVTLERRPLIE 348

Query: 271 AVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           +++RV + ++ R + +K +LS     L ++ + PD+G   ES+ V  +   +++ FN +Y
Sbjct: 349 SLERVGVFAAQRNEIIKFNLSEATQTLRISTEAPDVGSGEESLPVQMSGPDLELAFNVRY 408

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           LLE +    +      +V   L+ +                        Y++MP+++
Sbjct: 409 LLEALKVFHTQ-----QVSLELNGATQPAI---------WKPIGATRLCYLVMPVQL 451


>gi|293191013|ref|ZP_06609057.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309]
 gi|292820700|gb|EFF79666.1| DNA polymerase III, beta subunit [Actinomyces odontolyticus F0309]
          Length = 378

 Score =  299 bits (766), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 91/392 (23%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A    L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIKAEGDELTLSSFDYEVSANSHIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G + VS  LL DI + L              G +VN+  G S+F L   P  E+P 
Sbjct: 61  ADEAGEVLVSGRLLADISKSLPSKP----VSVELDGQKVNLVCGSSHFTLAVMPLDEYPL 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +        +S++    V +   A + ++    L G+   IN   + L  +ATD +R
Sbjct: 117 LPAQPTGVGAIDSSTLS-QAVTQVSIAASRDDTLPLLTGVRIEINGPAITL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232
           LA+ E+D       +  + +V  + + ++ + ++S  + V+V LS        S I    
Sbjct: 174 LAMRELDWEPTDTSIEEVALVKARILQDVAKSMTSG-AKVEVGLSGESQPGASSLIGFTA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +    +  L+DG++P  + + P +   +  V+   L +AV R+S+++  R  +V+L+ + 
Sbjct: 233 QGRRTTSTLMDGDYPAVRRLFPDTTPIQAVVDRHALLEAVKRMSLVA-ERKTSVRLAFTE 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +L +     D  +A E++    N   +   FN ++L++ +  + +     D V F    
Sbjct: 292 GQLVLEAGQGDNAQASEAIEATLNGDDISTAFNPQFLIDGLQVLDT-----DYVRFGFTH 346

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I G+    K ++       Y+LMP+R
Sbjct: 347 PTKPAVITGQ---KKADEGEVTQFRYLLMPIR 375


>gi|288916709|ref|ZP_06411084.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
 gi|288351964|gb|EFC86166.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
          Length = 386

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 171/395 (43%), Gaps = 21/395 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER +  + +    R +  + T  + V   +LL A    L++ A   E+   G + 
Sbjct: 1   MKFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGEVD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  +L DI R L              GT + ++ G++ F L   P  ++
Sbjct: 61  ATVTEEGRGLVNGKMLADITRSLPAAPVDVSVD----GTRLVVACGNARFALPMLPVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      + +  +  +   + V +   A   ++    L G+   I+ + L L   ATD 
Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTL--AATDR 173

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV  +           + +VP + + +  + LS     V ++L      E+      
Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGTGVEVAIALGTGPSGETLAGFAG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +   + RL++G FP Y+ ++P S+    ++    L +AV RV++++  R   V+L+ + 
Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVA-PRTAPVQLTFTP 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD- 351
           D L +        +A E++ V Y+   + + FN  YLL+ +  + SD V           
Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPTYLLDALGALESDIVRIGFASDEDPA 352

Query: 352 -SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++N    + GK  D +       +  Y+LMP+R+
Sbjct: 353 LAANKPAILTGKGGDDQT---EIPDYRYLLMPIRL 384


>gi|69246707|ref|ZP_00604075.1| DNA polymerase III, beta chain [Enterococcus faecium DO]
 gi|257878647|ref|ZP_05658300.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933]
 gi|257881313|ref|ZP_05660966.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502]
 gi|257885588|ref|ZP_05665241.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501]
 gi|257890530|ref|ZP_05670183.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410]
 gi|257893105|ref|ZP_05672758.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408]
 gi|258615269|ref|ZP_05713039.1| DNA polymerase III, beta subunit [Enterococcus faecium DO]
 gi|260558228|ref|ZP_05830424.1| DNA polymerase subunit III [Enterococcus faecium C68]
 gi|261206918|ref|ZP_05921607.1| DNA polymerase subunit III [Enterococcus faecium TC 6]
 gi|289566505|ref|ZP_06446929.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF]
 gi|293553548|ref|ZP_06674175.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039]
 gi|293563252|ref|ZP_06677704.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162]
 gi|293569158|ref|ZP_06680464.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071]
 gi|294616658|ref|ZP_06696429.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636]
 gi|294619746|ref|ZP_06699151.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679]
 gi|294623760|ref|ZP_06702588.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317]
 gi|314940130|ref|ZP_07847310.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04]
 gi|314943039|ref|ZP_07849843.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C]
 gi|314948157|ref|ZP_07851553.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082]
 gi|314953429|ref|ZP_07856347.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A]
 gi|314993832|ref|ZP_07859168.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B]
 gi|314998143|ref|ZP_07863025.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01]
 gi|68195121|gb|EAN09580.1| DNA polymerase III, beta chain [Enterococcus faecium DO]
 gi|257812875|gb|EEV41633.1| DNA polymerase subunit III [Enterococcus faecium 1,230,933]
 gi|257816971|gb|EEV44299.1| DNA polymerase subunit III [Enterococcus faecium 1,231,502]
 gi|257821444|gb|EEV48574.1| DNA polymerase subunit III [Enterococcus faecium 1,231,501]
 gi|257826890|gb|EEV53516.1| DNA polymerase subunit III [Enterococcus faecium 1,231,410]
 gi|257829484|gb|EEV56091.1| DNA polymerase subunit III [Enterococcus faecium 1,231,408]
 gi|260075402|gb|EEW63708.1| DNA polymerase subunit III [Enterococcus faecium C68]
 gi|260078546|gb|EEW66248.1| DNA polymerase subunit III [Enterococcus faecium TC 6]
 gi|289161714|gb|EFD09590.1| DNA polymerase III, beta subunit [Enterococcus faecium D344SRF]
 gi|291588127|gb|EFF19969.1| DNA polymerase III, beta subunit [Enterococcus faecium E1071]
 gi|291590478|gb|EFF22216.1| DNA polymerase III, beta subunit [Enterococcus faecium E1636]
 gi|291594016|gb|EFF25485.1| DNA polymerase III, beta subunit [Enterococcus faecium E1679]
 gi|291596714|gb|EFF27937.1| DNA polymerase III, beta subunit [Enterococcus faecium U0317]
 gi|291602303|gb|EFF32528.1| DNA polymerase III, beta subunit [Enterococcus faecium E1039]
 gi|291604791|gb|EFF34273.1| DNA polymerase III, beta subunit [Enterococcus faecium E1162]
 gi|313587855|gb|EFR66700.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a01]
 gi|313591723|gb|EFR70568.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133B]
 gi|313594532|gb|EFR73377.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133A]
 gi|313598239|gb|EFR77084.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133C]
 gi|313640635|gb|EFS05215.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0133a04]
 gi|313645411|gb|EFS09991.1| DNA polymerase III, beta subunit [Enterococcus faecium TX0082]
          Length = 376

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 98/393 (24%), Positives = 184/393 (46%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ R+  ++ L    R I  K TIP+   V +      L +  S  +I I   +   
Sbjct: 1   MKVTLNRASFMQELQTVQRAISSKTTIPILTGVKITLTQEGLTLTGSNADISIETFLSVE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + A    +I+R+L +        EN+   +V I+ G +NF +   
Sbjct: 61  NEKANMQIESTGSIVLQARFFSEIIRRLPEETFTLEVLENK---QVAITSGKANFIVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     E     +L   VL  L+  T FA++  E R  L G+ F +++    L A
Sbjct: 118 DADNYPHLPVVESHNQMKLPVHVLTKLINETVFAVSQHESRPILTGVHFILSDNS--LLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + +  Q A    I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLSQRVIPVE-QAADHFDIVIPGKSLIELSRSLTNEEEIVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP S + E+  +  +   A++R S++S   R   V+LS+  
Sbjct: 235 TMYFYSRLLEGNYPDTNRLIPSSFNTEVEFSVPSFLAAIERASLLSHEGRNNIVRLSIRP 294

Query: 293 DKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  ES++    +  P+DI FN  Y+   +         D  +  +  
Sbjct: 295 DAVVLYGNSPEIGKVEESLSYTASSGDPLDISFNPDYMKAALRAFG-----DMSIKVKFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+     +   +          V    ++ P+R
Sbjct: 350 SAIRPFTLEPTED--------GVQFIQLITPVR 374


>gi|255037469|ref|YP_003088090.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
 gi|254950225|gb|ACT94925.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
          Length = 374

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 176/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     ++     +P+  + LL  +   L + AS  +  +   I   
Sbjct: 1   MKFVVSSSVLLKQLSAINGVVSTNPIVPILENFLLTLDGNSLTVTASDLQTVMITEIEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+I + A LL D +R L +            GTE  I   +  + L      +FP 
Sbjct: 61  SSEKGAIAIPAKLLLDTLRGLPEQPITLQVNAETFGTE--IISDNGRYKLSGENPIDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T       S + +S  L + +  T FA +T+++R  + G+F  +  E      VATDGHR
Sbjct: 119 TPVVNRGQSVDFSSVALGSAISNTLFATSTDDLRPAMTGVFVQMGAESATF--VATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L       +       S+I+ RKA+  +   L S+D  VK   + S    +  ++ M  R
Sbjct: 177 LVRYRRTDIKSDIDT-SMIIQRKALNLLKSCLPSEDVPVKAEFTSSNAFFSFGNIRMICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  FP+Y+N IP +N   L +N   +  ++ R+SI S+     V++ ++ + L ++ +
Sbjct: 236 LIDERFPDYENAIPTNNPNTLTINRLEILSSLRRISIYSNRTTHQVRMKMALNDLVISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E +   YN   M+I FN K+L+E++ N+SS       + F L + N +  I
Sbjct: 296 DLDYSNEANERLMCEYNGDDMEIGFNAKFLIEVLGNLSSKT-----ITFELSAPNRAGLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D++         +   ++MP+ +
Sbjct: 351 IPVDQE------ENEDILMLVMPVML 370


>gi|225851072|ref|YP_002731306.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1]
 gi|225645102|gb|ACO03288.1| DNA polymerase III, beta subunit [Persephonella marina EX-H1]
          Length = 364

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 193/385 (50%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ ++++D+  LL  A    E+K+ +P+  + LL+A D  L ++ +  E+ ++ ++ A 
Sbjct: 1   MELVIDKNDLQNLLKKAISATEKKSALPILSNFLLEAKDDKLTVQGTDLEVHVSVSVFAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+  V+A  L DI R L         ++    + + I  G + + L   P  +FP 
Sbjct: 61  IENEGTACVNAKKLTDISRLLPSNEVYIKLED----STLKIKSGKTKYNLPVAPSEDFPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +F ++   L+  + +T +A + EE RY L G+ F     +  +  VATDGHR
Sbjct: 117 MYPFPEDNAFLISGDNLQKAIGKTAYASSKEESRYALQGVLFRSLNGN--IDVVATDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    I        +IIVP+KA+ E+ ++L+  +  V+V+ ++       +   +  R
Sbjct: 175 LALY--TIERTGKGDINIIVPQKALNELKKLLTGLE-DVEVAATDQYAFFRTKEWILMTR 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FP+Y  VIP    +E++++     +++ RVS +     + +KL+L  + L +   
Sbjct: 232 LLEGVFPDYTQVIPSEFSREIKIDKKEFLESIKRVSAVIEGDTKPIKLTLKPEILELKSV 291

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + + G+A++ ++V Y      I FN KYL+E ++ I       DEVV +  + N+   I 
Sbjct: 292 SVEYGEAVDELSVDYEGEEYSIGFNAKYLIEAVEVIDG-----DEVVIKFTNPNAQTLII 346

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D++ +           ++MPM I
Sbjct: 347 PADQEDR--------YKAIVMPMEI 363


>gi|289548994|ref|YP_003473982.1| DNA polymerase III subunit beta [Thermocrinis albus DSM 14484]
 gi|289182611|gb|ADC89855.1| DNA polymerase III, beta subunit [Thermocrinis albus DSM 14484]
          Length = 362

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 107/385 (27%), Positives = 197/385 (51%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V+R ++ E+L  A    E+K+ +PV  +  ++A DG L + A+  E  +   +PA 
Sbjct: 1   MRLYVDREELAEVLKKAQAATEKKSALPVLNNFKIKAEDGHLAVYATDLENFLFLHLPAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ V+A    +++R L         +E+    ++ +S G S F L      EFP 
Sbjct: 61  VEEEGTLAVNAKKFTEVIRSLTSAEVYLHLRED----KLVVSGGRSTFKLAVADPEEFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +   AS++LK  +++T +A++ E+ RY L G++ H  E+  K+  V +DGHR
Sbjct: 117 FPEISGSAAQINASTLLK-AIDKTEYAISKEDSRYALQGLYLHRVED--KIHFVGSDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+      A +    S+I+PRK++  +   L      V +   E+  H+  E+ ++SVR
Sbjct: 174 LALFWTYSDADV----SVILPRKSLKVLEGFLKETVGGVSIFKDENFAHVKGENWTLSVR 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GE+P+Y +VIP     ++ V+  +L  ++ R+S ++      VK+S   +   + + 
Sbjct: 230 LLEGEYPDYLSVIPQDFQTQVVVDRDSLIASIKRLSAIAESSAFPVKISFMENLAVLEIT 289

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            P+ G+  + + V     P++I FN KYLLE +D+     V+   V       +S V + 
Sbjct: 290 EPEFGEGRDEVEVELEGEPVEIGFNGKYLLEALDSFDVRRVILKAV-----DPDSPVLME 344

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +D +       K     ++MPMR+
Sbjct: 345 SEDPE-------KDPYLCLVMPMRL 362


>gi|319954740|ref|YP_004166007.1| DNA polymerase iii, beta subunit [Cellulophaga algicola DSM 14237]
 gi|319423400|gb|ADV50509.1| DNA polymerase III, beta subunit [Cellulophaga algicola DSM 14237]
          Length = 372

 Score =  299 bits (765), Expect = 6e-79,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L       L + AS  E  ++  +   
Sbjct: 1   MKFIVSSTYLLKQLQVLGGVINNSNTLPILDNFLFDLKQNQLIVSASDLETTMSSVLNVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V A LL DI++   +       ++N     V IS     + L     +EFP 
Sbjct: 61  SDNEGLIAVPAKLLLDILKTFPEQPLTFVVEDN---NTVEISSNHGKYALAYADGAEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S  +   +L   + +T FA   +++R  ++GIFF  + E L    VATD H+
Sbjct: 118 AVELANPSSTTIIGDILATAINKTIFAAGNDDLRPVMSGIFFQFSPESLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   +       +++   I+P+K +  +  IL   +S V +  +ES    + E+  +  R
Sbjct: 176 LVKYQRT-DISASQVAEFIMPKKPLNLLKGILGGSESDVTIEYNESNAKFSFENTELICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N   L ++   L  +V RVSI S+     ++L ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNVLSISRNQLLSSVRRVSIFSNKTTHQIRLKIAGAELNISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L+E++ N++S     D+V   +   N +  +
Sbjct: 295 DIDYSNKAEERLTCSYQGDDMQIGFNSRFLVEMLANLTS-----DDVSLEMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       ++MP+ +
Sbjct: 350 TPVD-----GLDEGELVTMLVMPVML 370


>gi|238061914|ref|ZP_04606623.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149]
 gi|237883725|gb|EEP72553.1| DNA polymerase III, beta subunit [Micromonospora sp. ATCC 39149]
          Length = 377

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 172/392 (43%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  VER  + E +    + +  + ++PV   V+L+  DG L++     E+     +   
Sbjct: 1   MKFRVERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGNLQVSGFDYEVSSQVTVEVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+  VS  LL +I + L             +G  + +  G + F L + P  ++P+
Sbjct: 61  GDADGAALVSGRLLAEITKALPAKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        + ++   + V +   A   +E    + G+   ++  +  L  +ATD +R
Sbjct: 117 LPDMPESAG-TVDAAAFASAVAQVAVAAGRDETLPMMTGVRIELSGGN--LAMLATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           LA+ E++      +   + +VP + + +  + L      V ++LS     E  I  +  +
Sbjct: 174 LALREMEWHPDDPEVSINALVPARTLHDTAKALGPLGGQVTMALSQGAAGEGMIGFSGGT 233

Query: 235 LSMSVRLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              + RL+DG  +P  +++ P S++ E R+  + L + V RV++++  R   V LS SSD
Sbjct: 234 RRTTSRLLDGANYPPVRSLFPASHNAEARLAVSTLIEVVKRVALVA-ERTTPVLLSFSSD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +  +A E+M   +   P+ I FN +YL++ + N+ +        +     +
Sbjct: 293 GLVVEAGGTEEARASEAMEATFTGDPLTIGFNPQYLIDGLANLGAQ-----FALLSFVDA 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I    +D +          Y++MP+R+
Sbjct: 348 FKPAVISPAGEDGEVIP----GYRYLIMPIRV 375


>gi|258650273|ref|YP_003199429.1| DNA polymerase III subunit beta [Nakamurella multipartita DSM
           44233]
 gi|258553498|gb|ACV76440.1| DNA polymerase III, beta subunit [Nakamurella multipartita DSM
           44233]
          Length = 408

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 90/420 (21%), Positives = 167/420 (39%), Gaps = 49/420 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R D+ + +    + +  +  +PV   +LL+ +   L +     E+     +   
Sbjct: 1   MKFRVARDDLADAVAWVAKSLPARPPVPVLGGILLEVSGSTLTVAGFDYEVSTRATLTVD 60

Query: 61  V------DVCG------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF 108
                  D  G       + VS  LL +I R L             LG +V+I  G + F
Sbjct: 61  TLDELEPDAPGGPAGTDRVLVSGRLLAEITRSLPAKPVDLAV----LGPKVSIVAGSARF 116

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L + P  ++P   +     S  + S+     V +T  A   ++    L GI   I+ + 
Sbjct: 117 TLPTMPVEDYPPLPQMP-AASGTVDSAEFAEAVAQTAIAAGRDDTLPMLTGIRVEIDGD- 174

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
            +L   ATD  RLAV E+        +  +++VP + + +  + L      V V+L E  
Sbjct: 175 -RLTLAATDRFRLAVRELGWHPDQENLSTAVLVPARTLADAAKTLGGA-KQVTVALGEGL 232

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           + L+      +VRL+D EF  Y++++P S+   + V    L +++ RV++++  R   ++
Sbjct: 233 LGLDAGDRRTTVRLLDVEFVKYRSLLPTSHTTTVEVPVAALGESIKRVALVT-DRGHHLR 291

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L +    L +T    D G+A E +    +   + I FN  YLL+ +  + +     D V 
Sbjct: 292 LQVGEGALTLTAGGDDEGRAEEDLPAEVDGEELLIAFNPSYLLDGLGVVHA-----DTVR 346

Query: 348 FRLDSSNSSVFIRG----------------------KDKDSKNNKDNKVNAFYVLMPMRI 385
               +      +                         D D   + ++     Y++MP R+
Sbjct: 347 LSFTTPARPALLVPIVKSDEPAESAEAAAEAAATPDIDADGVGSDEDTPAYRYLVMPARL 406


>gi|312142410|ref|YP_003993856.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus']
 gi|311903061|gb|ADQ13502.1| DNA polymerase III, beta subunit [Halanaerobium sp. 'sapolanicus']
          Length = 371

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 80/384 (20%), Positives = 181/384 (47%), Gaps = 17/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++E+ D+ + L    R + +  T+P+   + L+    +L +KA+  E+ I   +   
Sbjct: 1   MKFSIEQKDLYKALNIVRRAVAKNKTLPILTGIYLKVEKNILSLKATDLELGIKYNVNVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GS+ + A    +I+R+L          E++   ++ I+  +S F +  F   EFPS
Sbjct: 61  SEEEGSVVLPAMQFINIIRELPSEKIEIELNEDKW--QLQINCLNSLFKINGFDPDEFPS 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E    F L ++  K+++E+   + + +E +  L G  F +  E++++  V+T+ +R
Sbjct: 119 LPEVEASAEFNLPAAKFKSMLEKVKISTSKDETQPALTGALFVVKAEEVRM--VSTNTYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +  +   + ++  +I+P   + E+  +L   + S+ + +  +        + +  R
Sbjct: 177 LSYVDSPLKTNLDQIIEVILPGSTLDELNNLLED-EGSIDIVVDNNYARFEFAGIELISR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP   + + + + + L  AV R S+++      + +S     + +   
Sbjct: 236 LIEGKFPNYELVIPDEFNSKFKADLSKLHGAVKRASLIAKEDANIISISADEGIMEINST 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
               G A E +++  +     I  +  YL++++  + S     +E+   +    + + I+
Sbjct: 296 EGSAGYAHEELSIELSGPDQKINIDAGYLIDVLKVLDS-----EEINIEMIGPLNPLVIK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +D+             Y++MP+R
Sbjct: 351 NEDQAGGK-------FIYLIMPVR 367


>gi|78778386|ref|YP_396498.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9312]
 gi|78711885|gb|ABB49062.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT
           9312]
          Length = 385

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 193/399 (48%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A+ G   + +      + I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISLTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL + + +S   +  L   + I     +F L+  P  ++
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPNESPVSLEVDENLDNIL-IKSDRGSFNLKGIPSDDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F   +  L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKATIFATSNDDSKQLLTGVNFTFKQNYLE--SASTDG 177

Query: 179 HRLAVAEV---------DIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +         D    I    S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGNEEHIENKDKSPSIEDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP +  K    N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGAYPNYSQLIPDTFSKIFNFNTKKLIDALERIAVLADQQSSVVK 297

Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L +  L  ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S       V
Sbjct: 298 IKLDNTDLASISADAQDIGNANESIPVSYSGEDFDIAFNVRYLLEGLKVIASK-----NV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + + + + +      +D        N  +  Y++MP+++
Sbjct: 353 LLKCNLATTPAVFVPED--------NLNSFTYLVMPVQV 383


>gi|163848190|ref|YP_001636234.1| DNA polymerase III subunit beta [Chloroflexus aurantiacus J-10-fl]
 gi|222526095|ref|YP_002570566.1| DNA polymerase III subunit beta [Chloroflexus sp. Y-400-fl]
 gi|163669479|gb|ABY35845.1| DNA polymerase III, beta subunit [Chloroflexus aurantiacus J-10-fl]
 gi|222449974|gb|ACM54240.1| DNA polymerase III, beta subunit [Chloroflexus sp. Y-400-fl]
          Length = 377

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + D+   L      +  K+T+PV  ++LL  ++G L++ A+  E+ I   I A+
Sbjct: 1   MKLTCMQEDLKRGLAAVGHAVAGKSTLPVLANILLATDEGRLKLTATNLEVGINRWISAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V A LL D+V  L +         ++    + +  G     ++     EFPS
Sbjct: 61  ITRDGAVAVPAKLLTDVVGGLPNDKVTLSL--DQKTQTLRVECGRFVSNIKGVDADEFPS 118

Query: 121 TKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                         + V +  +++  FA AT+E R  L G+     ++ + L  VA DG 
Sbjct: 119 LPTVSAQTPLVSLPAEVWQEAIDQVAFAAATDESRPILTGVLVRTRDQQVTL--VAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSM 237
           RLA+  + + A +A     ++P + + E+ RI+   D+ V +      S +  + E++ +
Sbjct: 177 RLAMRTIQLSAPVAHAVDCLIPARTLSELARIIGDTDAEVAMVYTPGGSHVLFHTENIEV 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------ 291
             RLI+G FP+++ +IP      + ++ + L +AV   S  +      VKL +       
Sbjct: 237 VSRLIEGRFPDFERIIPQQYLTRMVLDNSELAKAVKLASFFAGSSQNVVKLKIEPASELA 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++ ++ +  ++G     ++         I  N ++L + I  + S+     ++ F + 
Sbjct: 297 PGRVVISANAAELGDNTSELDGSVTGEGGVIALNVRFLADAIAAVHSN-----QIAFEMQ 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S+ S    +   +D            +++MPM
Sbjct: 352 SAQSPAVFKPVGQD---------GYIHIVMPM 374


>gi|282889708|ref|ZP_06298247.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str.
           Hall's coccus]
 gi|281500282|gb|EFB42562.1| hypothetical protein pah_c004o055 [Parachlamydia acanthamoebae str.
           Hall's coccus]
          Length = 376

 Score =  299 bits (765), Expect = 7e-79,   Method: Composition-based stats.
 Identities = 98/385 (25%), Positives = 183/385 (47%), Gaps = 13/385 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   ++  L+     I+ +K TIP+  + L++A +G L + A+   + I     A 
Sbjct: 1   MKFVISTQELNFLINKCLNIVSQKATIPILSNFLMEAKNGELILTATDLTVGIRCHTEAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  + A     ++R+L          +NE      +S   S F L    +SEFPS
Sbjct: 61  ILEEGATALPAKRFAQLIRELTAVNVEIATNDNET---TQVSADSSRFKLHGMNKSEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F++    LK+++ RT FA++ ++ R+ L G+F  I E   K     TDG R
Sbjct: 118 LPQMDGAVQFKIPEGDLKDMLFRTAFAVSRDDNRFALTGVFMQIMEG--KAIFAGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+   + +   +A   + I+P KAV EIL+ LS  +    V L   +I +   +  +  +
Sbjct: 176 LSRTHLSLGLDVAFNGNYIIPIKAVEEILKNLSD-NGEATVYLMHDKIAIEASNTMLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ G++P+   VIP   +  L ++   L   + +VS+ ++    +V+ + +  +L +  +
Sbjct: 235 LLSGDYPDVSRVIPNQLETVLSLHREELITLLRQVSLFTADTSHSVRFTFNEGELRLAAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G+   SM V Y    ++I FN  Y L+I+ +        + V   L    +   I 
Sbjct: 295 TMEIGEGKVSMPVNYTGPRLEIAFNPIYFLDILRHSKG-----ETVTMGLTDPFNPGVIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             DK+  +  ++ V+  +VLMPMR+
Sbjct: 350 --DKEGVSQINSSVSPLFVLMPMRL 372


>gi|294505818|ref|YP_003569876.1| DNA polymerase III, beta chain [Salinibacter ruber M8]
 gi|294342146|emb|CBH22924.1| DNA polymerase III, beta chain [Salinibacter ruber M8]
          Length = 422

 Score =  298 bits (764), Expect = 8e-79,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 191/391 (48%), Gaps = 24/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T   +D+LE L      +  K+T+P+   +L + +   L + A+  EI I   +P  
Sbjct: 46  MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 105

Query: 61  VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +  G+     I V A  L D +R L D   I F  +++    ++   G  ++ +     
Sbjct: 106 FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 162

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S++P   E E  +   +   +L   +++T FA++ + +R  + G++F ++EE+     VA
Sbjct: 163 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEE--TSVVA 220

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRL    +    +       IVP KA     RI+   D    V + +S +       
Sbjct: 221 TDGHRLVKLTLP-ELRADTSADFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGES 278

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RLID  +PNYQ+VIP  ND+ L VN  ++  AV RV + SS     ++L +++D +
Sbjct: 279 RVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTV 338

Query: 296 CMTVDNPD-MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            ++ ++ +   +A E+++  Y+  PM+I FN +YL E++ N+       DEVVF L S N
Sbjct: 339 TISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSPN 393

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +  ++        +  +   ++MP+ +
Sbjct: 394 RAGIVLPREG------ADDEDILMLIMPVML 418



 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 26/183 (14%), Positives = 64/183 (34%), Gaps = 9/183 (4%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
                F  +S+ L   +     A+ ++     L  I F  + + L+L A   +   +   
Sbjct: 43  PTPMKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTV 102

Query: 185 EVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
            V        +   I VP + + + LR L           ++S   + +++     +++ 
Sbjct: 103 PVQFEKNGTPESTPIAVPAQRLIDTLRALPD---LPIEFAADSDFEIRMDTDQGHYKMVG 159

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMT 298
            +  +Y  +       E+ V    L +++D+ +   S          V   +S ++  + 
Sbjct: 160 HDGSDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEETSVV 219

Query: 299 VDN 301
             +
Sbjct: 220 ATD 222


>gi|259047904|ref|ZP_05738305.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC
           49175]
 gi|259035438|gb|EEW36693.1| DNA polymerase III, beta subunit [Granulicatella adiacens ATCC
           49175]
          Length = 385

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 103/396 (26%), Positives = 180/396 (45%), Gaps = 27/396 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V R   L+ L    R I  K TIP+   + L A++  L +  S  E+ I   +P  
Sbjct: 1   MKFSVNRQGFLKNLVDVQRAIPSKTTIPILTGIKLVASEEGLTLTGSDSEVSIEVFLPIE 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   GSI + A    +IV+KL       F  E     +  I+ G ++F L   
Sbjct: 61  DEELQLTVQEPGSIVLPARFFGEIVKKLPLN---LFSIETNDQLQATITAGSASFTLNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P   E E  +   +   + + ++ +T  A++T E R  L GI   I   D KL A
Sbjct: 118 SAVDYPQLPEIEKNHVITIPVPLFRQVIVQTAVAVSTAESRPILTGIHMVIK--DNKLKA 175

Query: 174 VATDGHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRL+   + +       A    + +P K + E+ RI+   + ++  ++++++I  
Sbjct: 176 VATDSHRLSQRIIPLQMPAGSDALTFEMTLPGKTLLELSRIIDGLE-TIDFAITDNQILF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLS 289
             E+LS   RL++G +P+   +I    +  + V  + L  AV+R S+MS   +     L+
Sbjct: 235 QTETLSFYSRLLEGMYPDTDRLINDGANTSITVVASELVAAVERASLMSHTDKNNIATLT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           LS +++ +T  +P++G   E + V  +   P++I FN  YL E +    S      E V 
Sbjct: 295 LSPERILLTGKSPEVGTVEEEIAVENFEGAPLEISFNPDYLKEALKLFGSS-----EAVI 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +N    ++ K+  S        +   ++ P+R
Sbjct: 350 NFLEANRPFTLKLKEDHSGIPH----SFIQLVTPVR 381


>gi|260588816|ref|ZP_05854729.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583]
 gi|260540595|gb|EEX21164.1| DNA polymerase III, beta subunit [Blautia hansenii DSM 20583]
          Length = 370

 Score =  298 bits (764), Expect = 9e-79,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 176/385 (45%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +    + +  K T+P+   +L+ A+   ++  ++  E+ I   +   
Sbjct: 1   MKLVCPKSELQKSVSIVMKAVPGKTTMPILECILIDASTNDIKFTSNDMELGIETRVQGL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A +  +IVRKL D        E    T   I+   + F +      +F  
Sbjct: 61  VLEKGIIALDAKIFSEIVRKLPDNDVTIETDEKLNAT---ITCEKAKFNIPGKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  E    + G  F I  E+  L  ++ DGHR
Sbjct: 118 LPLIEKNDCIRVSQFTLKEIIRQTIFSIAVNENNKLMTGELFQI--ENNMLRVISLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +         ++VP K + EI +ILS + +  V++ LS + I    +   +  
Sbjct: 176 ISIRKIGLKENCEDR-KVVVPGKTLNEISKILSGELEDMVEIYLSANHILFEFDDTKVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++++N       +DR +++      + + +++ + ++ + 
Sbjct: 235 RLIEGEYFKIDQMLSSDYETKVKINKKEFLDCIDRATLLVKEGDKKPIIINIQNGQMELR 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  +G   E +++      + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 295 IDSQ-IGSMKEDIDIEKEGKDIMIGFNPKFLIDALKVID-----DEEVSIYLMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D+     Y+++P+
Sbjct: 349 IR----------DDNQQYIYLILPV 363


>gi|297621406|ref|YP_003709543.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044]
 gi|297376707|gb|ADI38537.1| DNA polymerase III, beta chain [Waddlia chondrophila WSU 86-1044]
          Length = 373

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 177/385 (45%), Gaps = 17/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   +   L+     ++    T+PV  ++L++A +G L + A+   + +     A 
Sbjct: 1   MKFVISTQEFNYLISKCQHVVPPNPTMPVLSNILIEAKNGELILTATDLTVGVRCFTEAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS T+    L  ++R+L          EN +     I    S F L       +P 
Sbjct: 61  VLEEGSTTLPVKKLASLIRELTSMNVEVTTSENHVTE---IISDTSKFKLNGMAGGNYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     +L    LK +  RT FA++ ++ RY L G+F HI  E+ + C V TDG R
Sbjct: 118 LPSFADATPIKLTQQQLKEMFFRTSFAVSKDDTRYALTGVFLHI--ENGRACFVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA   +D+    +     IVP KAV EIL+ L  ++    + L   +I +  E+     +
Sbjct: 176 LARTRLDLEIDPSFSGGYIVPIKAVDEILKNLK-EEGDATLYLLNDKIAVETENSLHVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ G++P+   VIP  + + L ++   L   + +VS+ ++    +V+ S  + ++ ++ +
Sbjct: 235 LLSGDYPDVNRVIPDRSGQSLTLHREELLTLLRQVSLFTAEGYHSVRFSFGNGEVKLSAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G+   SM V Y+   +DI F+  + ++I+ +        + V   +  S +   I 
Sbjct: 295 TKDVGEGNVSMPVNYHADQIDIAFDPTFFMDILKHTRG-----ERVTLGVTDSFNPGVIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++ ++++        +VLMPMR+
Sbjct: 350 DTEEGTEDSP------LFVLMPMRL 368


>gi|269837341|ref|YP_003319569.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM
           20745]
 gi|269786604|gb|ACZ38747.1| DNA polymerase III, beta subunit [Sphaerobacter thermophilus DSM
           20745]
          Length = 379

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 179/393 (45%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++ ++ D+   LG+  R + RK+T+PV  +VLL A  G L++ A+  EI IT    A+
Sbjct: 1   MRLSCQQEDLQRALGYVSRAVSRKSTLPVLGNVLLSAEGGRLKLAATNLEIAITAWADAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ITV + LL + V  L + +     + +     V +S   S  +++     +FP+
Sbjct: 61  VEEEGTITVRSDLLTEFVASLPNDSV--SIELDRRTLSVAVSCARSKAHIKGIGAEDFPT 118

Query: 121 TKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   +  +  +  +  + +  FA AT++ R  L G+        L L   A DG 
Sbjct: 119 LASIGDTEPTARIDPAEFREAIGQVAFAAATDDSRPVLAGVLAEFEGASLTL--AAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237
           RL+V   D+V    +  SI+VP +A+ E+ RI+   +  + ++++ +  ++ +   S+  
Sbjct: 177 RLSVRRCDLVEPSRESLSIVVPARALQELARIIGDLEEPIDLAVTPNRSQLLVRAGSIEF 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL-------SL 290
             RLIDG FP+ +++IP +    + V+      A  R  + +      V++        L
Sbjct: 237 LSRLIDGHFPDVRHIIPQTYGTRMVVSRDEFLAAARRAKLFAQSNNDVVRIQMNPGDGEL 296

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
                 ++    + G   + +          I FN +YL E++  + S+     EV   +
Sbjct: 297 DPGFATISAQAAETGDNEDHLEAQVEGPQAHIAFNGRYLTEVLSVMRSN-----EVALEM 351

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S N++   +    D         +  +V+MPM
Sbjct: 352 TSPNAAGVFKPVGSD---------DFTHVIMPM 375


>gi|331092113|ref|ZP_08340944.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
 gi|330402314|gb|EGG81885.1| DNA polymerase III [Lachnospiraceae bacterium 2_1_46FAA]
          Length = 369

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 181/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIICTKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIETIIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D   +    E +   +  I+   + F +      EF  
Sbjct: 61  IIEKGLIAIDAKIFSEIVRKLPDNEVVI---ETDSNLQTLITCEKAKFNISGKSGEEFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     EL+   LK ++ +T F ++  +    + G  F INE  LK+  VA DGHR
Sbjct: 118 LPYIEKEEPVELSQFTLKEIIRQTIFTISDHDSNKLMTGELFEINENILKV--VALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V+++   A    +IVP K + E+ +ILS + +S   +  + + I    +   +  
Sbjct: 176 ISIRKVELMNNYA-SKKVIVPGKTLIEVSKILSGEVESKANIYFTPNHIVFEFDQTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++RVN   L   +DR  ++      + + +++  + + + 
Sbjct: 235 RLIEGEYFKIDQMLSSDYETKVRVNKKELLSCIDRAMLLVKEGDKKPIIINIGDEAMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +      + I FN K+L++ +  I      D+E+   L ++ +  F
Sbjct: 295 IQSQ-LGSMNEDILITKEGKDLLIGFNPKFLMDALRVIE-----DEEIQIYLTNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D K +  Y+++P+
Sbjct: 349 IR----------DEKESYIYLILPV 363


>gi|30248033|ref|NP_840103.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718]
 gi|30179918|emb|CAD83913.1| DNA polymerase III, beta chain [Nitrosomonas europaea ATCC 19718]
          Length = 373

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 117/392 (29%), Positives = 198/392 (50%), Gaps = 28/392 (7%)

Query: 1   MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T+ +R  + + L     I+ER++T+P+  + L++  +G L +  +  EIE       
Sbjct: 1   MKLTITDRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGQLTLVTTDLEIEAEATSNI 60

Query: 60  -SVDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             ++  G+   TVS   L DI+R L  GA I   +       + I  G S F LQ  P  
Sbjct: 61  PELENQGALQTTVSVRKLQDILRALPSGAAIELTRSE---NRLQIVSGKSRFSLQLLPAE 117

Query: 117 EFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +FP      E    ++ LA  VLK  ++R   AMA +++RYYLNG+   I  ED KL  V
Sbjct: 118 DFPRMIRDSEPCSATYTLAQRVLKKHLQRVAHAMAQQDLRYYLNGMLLLI--EDNKLTLV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL +  +D+     K  + IVPRK V E++R L   D  V V +   ++      
Sbjct: 176 ATDTHRLGITSIDLDGNFEKSET-IVPRKTVLELIRQLEDSDKPVIVEIYPKKVCFRFSD 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292
             +  ++I G+F +++  IP ++  +  VN  +   A+ R +I+SS     + V L++++
Sbjct: 235 AVLVSKVISGKFLDFRRAIPQTSVFQFDVNRLDFLHALQRTAIISSSNDLFRNVHLNITN 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            KL ++  N +  +A E +++ Y+   +D  FN  YL+E+++N+ S     +++    +S
Sbjct: 295 GKLNISAKNKEQEEAQEEIDIVYSNETIDTSFNIVYLMEVLNNLDS-----EQIRCSFES 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S++ I   D +            +VLMPMR
Sbjct: 350 MQSAILITLPDDEQ---------FKHVLMPMR 372


>gi|317131010|ref|YP_004090324.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3]
 gi|315468989|gb|ADU25593.1| DNA polymerase III, beta subunit [Ethanoligenens harbinense YUAN-3]
          Length = 369

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 99/387 (25%), Positives = 189/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+       + E L  A R +  K ++P    +L++  D  + ++A   E+ I+  I A 
Sbjct: 1   MQFRCNTKKLAEALAVAGRAVSSKTSMPALEGILIRTGDHQIILQAYDLELGISTTIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G I ++A +  D+VRKL  G  +    +++L T   ++ G + F +   P  EFP 
Sbjct: 61  CRSDGEIVLNAKIFADMVRKLP-GDTVEVKSDDKLLT--IVTSGAAEFTILGTPAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S EL  ++L +++ +T FA++T+E      GI F + E+ L+L  VA DG R
Sbjct: 118 LPSLSDGASIELPENLLSSMIRQTIFAISTDESNPIHTGILFELQEKTLRL--VAVDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+    +        + +VP K + EI ++L S  D  + V++ E  I  +I   ++  
Sbjct: 176 LAIRTEPVTQD--GSFAFVVPGKTLAEISKLLHSESDEKITVTVGEKHILFDIAGYTVIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           RL++G+F +Y++V+  +     RVN   L  ++DR S++ + R++  V+    SD++ + 
Sbjct: 234 RLLEGQFLDYKSVLGGNTTAHARVNARALTDSIDRASLLITDRLKSPVRCIFESDRIRIK 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +  +GK  + ++  +   P ++ FN +YL++ +          DEV  +L    S + 
Sbjct: 294 CSSS-IGKVYDEVSAAFEGEPCEMGFNNRYLMDALKAADC-----DEVRIQLGGPLSPMK 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D D+           ++++P+R+
Sbjct: 348 ICPPDGDA---------FIFLVLPVRL 365


>gi|320095109|ref|ZP_08026818.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
 gi|319977976|gb|EFW09610.1| DNA-directed DNA polymerase III beta subunit [Actinomyces sp. oral
           taxon 178 str. F0338]
          Length = 378

 Score =  298 bits (763), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + E +    R +  +   P+   V ++A D  L + +   E+     IPA+
Sbjct: 1   MKFTVARDVLAEAVSWTARALPVRPASPILAGVRIRAADDELTLSSFDYEVSANSKIPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + VS  LL DI + L         +    G +VN+  G S+F L   P  E+P 
Sbjct: 61  VDEAGEVLVSGRLLADISKSLPSKPVTVELE----GQKVNLVCGSSHFTLAVMPLDEYPL 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +     +    ++    V +   A + ++    L G+   +      +  +ATD +R
Sbjct: 117 LPAQPAAIGYIDPQTL-AQAVAQVSIAASRDDTLPLLAGVCTELTGS--TITFLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNI 232
           LA+ E+D       +  + ++  + + ++ + ++S  + V+V LS        S I  + 
Sbjct: 174 LAMRELDWQPTDTSIEEVTVIKARILQDVAKSMTSG-TKVEVGLSGQSQPGASSLIGFSA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                +  L+DG++P  + + P +   +   +   L +AV R+S+++  R  +V+L+ S 
Sbjct: 233 SGRHTTSTLMDGDYPAVRRLFPETTPIQAVCDRHALLEAVKRMSLVA-ERNTSVRLAFSE 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            ++ +     +  +A E++    +   +   FN ++L+E +  + +     D V F    
Sbjct: 292 GQVVLEAGQGENAQASEAIEATLHGDDISTAFNPQFLIEGLSVLDT-----DYVRFGFTH 346

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     I G+ K    ++       Y+LMP+R
Sbjct: 347 ATKPAVITGQKKP---DEGEVTQFRYLLMPIR 375


>gi|227893837|ref|ZP_04011642.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047]
 gi|227864326|gb|EEJ71747.1| DNA polymerase III, beta chain [Lactobacillus ultunensis DSM 16047]
          Length = 378

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 168/392 (42%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +
Sbjct: 3   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTEDELTLTGSDTDISIEIKIPVN 62

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 63  EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSENSEFTINGLDAN 119

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F    + +K  AVAT
Sbjct: 120 NYPRLPEIPDATSFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 177

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS
Sbjct: 178 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKVCPGDNQALFIIGNLS 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL--SSD 293
              RL+DG +P+   +IP      +  +   L  A++R S+++ + R   V L+L     
Sbjct: 238 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDVEKQ 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 298 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMDFTK 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I     + +           ++ P+R
Sbjct: 353 PLRPFIINPDKDNVE--------FVQLITPVR 376


>gi|218781945|ref|YP_002433263.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218763329|gb|ACL05795.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 376

 Score =  297 bits (762), Expect = 1e-78,   Method: Composition-based stats.
 Identities = 101/394 (25%), Positives = 192/394 (48%), Gaps = 27/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ +   L+ +     I  RK T P++ +VL+ A    + + A+  EI   G  PA+
Sbjct: 1   MQFSISKEIFLDGITKVQGIAGRKTTFPITANVLISAQGSTITLVATDLEIGFKGHYPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+IT+    L++IVR+   GA      EN     V I      + +     ++FP 
Sbjct: 61  VEEEGTITIPGKKLFEIVREFPHGAIDVRDLEN---GWVQIFKDKVQYKIVGMDPNDFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLNGIFFH--INEEDLKLCAVAT 176
             E E +  FEL S V  +++E+T+ +  M++EE R +L G++    + EE   L  V+T
Sbjct: 118 LPEVEGMELFELDSLVFADMIEKTNLSGGMSSEEKRPHLIGVYLEKIVQEEKNGLRMVST 177

Query: 177 DGHRLAVAEVDIVAQI-----AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           DG+RLA  +      +          +I+P+K + EILR+ S     + + + ++   + 
Sbjct: 178 DGNRLARVDYIPDEGMQPPAFDGAKGVILPKKVMTEILRV-SEGGGKISLGVQKNYFVIQ 236

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            E+ ++  RL++GE+P+Y  VIP   +    +        + R+SI+ S R +AV+  + 
Sbjct: 237 KEAETIIGRLVEGEYPDYNLVIPNDLETFFEIEKQPFVSILKRMSILCSERYRAVRFKVD 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++V+NP++G + E M + +N    +  FN ++ ++ ++ + S     D +   + 
Sbjct: 297 PQRLEVSVNNPELGDSNEEMPIAFNGGAFEAAFNPRFFVDALNPMKS-----DMIKVNIL 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S+    + G +               V+MPMR+
Sbjct: 352 DSSKPCILEGSEDP---------RYLSVIMPMRM 376


>gi|296134506|ref|YP_003641748.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12]
 gi|295794628|gb|ADG29418.1| DNA polymerase III, beta subunit [Thiomonas intermedia K12]
          Length = 371

 Score =  297 bits (762), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 120/390 (30%), Positives = 208/390 (53%), Gaps = 27/390 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++T  R ++L+LLG    I+ER+ T+P+  +VL+Q N        S  E++I      +V
Sbjct: 3   RLTSSRDELLKLLGQGAGIVERRQTLPILANVLIQHNANGTLFITSDMEVQIRLQAGEAV 62

Query: 62  D---VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                  +ITV+   L DI+R    G     + +     ++ +    S F LQ+ P  +F
Sbjct: 63  QTSAEDAAITVNMRKLLDILRAASPGNVTLEWSDG----KMTVRAAKSRFSLQTLPAEDF 118

Query: 119 PSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           P  +       ++  L   +LK L+  THFAMA  +IRYYLNG+ +  + + + L  VAT
Sbjct: 119 PLVRAATDFSDHALRLPQKLLKRLLGLTHFAMAQHDIRYYLNGMLWVADGQQMHL--VAT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235
           DGHR+ +A   +   + +   II+PRK V E+ R+LS +D   + ++L+ ++  L ++ L
Sbjct: 177 DGHRMTLASAPLEKAVERRE-IILPRKTVLELSRLLSDEDDAMIDIALASNQARLTLDGL 235

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             + +LI+G+FP+YQ V+P  +   L+V  T L+ A+ RV+I+++ + + V+++L    L
Sbjct: 236 EFTSKLIEGKFPDYQRVVPKGHRNMLQVERTTLQAALQRVAILTNDKFKGVRVNLEPGLL 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T  N +  +A E +++ Y    ++I FN  YL++ + N++S     D++   L   NS
Sbjct: 296 RLTSINAEQEEAQEEIDIDYGGDVIEIGFNIAYLIDALANMTS-----DQIRLELQDGNS 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S      D+          N  YV+MPMRI
Sbjct: 351 SALFTMPDEP---------NFKYVVMPMRI 371


>gi|283457091|ref|YP_003361654.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18]
 gi|283133069|dbj|BAI63834.1| DNA polymerase sliding clamp subunit [Rothia mucilaginosa DY-18]
          Length = 380

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 169/388 (43%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L+ A+ G + I +   E      I A 
Sbjct: 7   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSARQVIAAD 66

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V   +L +I R L +        E    + + I    +NF L   P  ++P 
Sbjct: 67  VEAEGVCLVPGKILAEICRSLPNAPVEFTADE----SVIRIHCRSANFQLAGMPVVDYPE 122

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V++   A++ +E    L GI   IN + + L  +ATD +R
Sbjct: 123 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 179

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSM 237
           LA+ E+           ++++  K V E+   LS    ++ ++L  +   I     +   
Sbjct: 180 LAMREIKWNPTNPDVQAAVLLKAKTVSEVGSTLSGS-GNLSIALPAAGELIGFAAGTRRT 238

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  +   + +
Sbjct: 239 TSVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVA-ERNTPLRLKFTQGSVAI 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                D  +A E++  + +   + + +N  YL + +    +     + V F    +    
Sbjct: 298 DAGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGLKVFGT-----EFVRFSFTDAPKPA 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G+D+      ++  N  Y+LMP+R+
Sbjct: 353 VISGQDEP---LAEDDRNYRYLLMPVRL 377


>gi|255283815|ref|ZP_05348370.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM
           14469]
 gi|255265698|gb|EET58903.1| DNA polymerase III, beta subunit [Bryantella formatexigens DSM
           14469]
          Length = 367

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 182/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +++++L+ +    + +  K T+P+   +L+ A  G ++   +  E+ I   +  S
Sbjct: 1   MKIVCQKNELLKSVNIVMKAVPSKTTMPILECILIDATRGEIKFTTNDMELGIETVVNGS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I+RKL +        E +   +  I    + F +      ++P 
Sbjct: 61  ILEKGKIALDARLFSEIIRKLPENEV---TIETDNKLQATILCEKAQFSISGKDGEDYPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  ++   LK ++++T F++A  E    + G  F I++  LK+  V+ DGHR
Sbjct: 118 LPFVEKDNSICISQFTLKEVIKQTIFSIAQNENNRMMTGELFEISDNILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++     K   I+VP K + EI +ILS + +  V +  +++ I    ++     
Sbjct: 176 ISIRKIELKENYEK-KKIVVPGKTLIEISKILSGETEDMVNIYFTKNHILFEFDNTIAVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++    + +L++N   L   +DR +++      + + + +S   + + 
Sbjct: 235 RLIEGEYFRIEQMLSSDYETKLKINKKELLNCIDRATLLIKEGDKKPIIIGISDTSMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++      + I FN ++L++ +  I      D+ +   L +  +  F
Sbjct: 295 I-NSQIGSMNEQISIEKEGKDILIGFNPRFLMDALRVID-----DETITIYLVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D+  +  Y+++P+
Sbjct: 349 IR----------DDAESYIYLILPV 363


>gi|111219508|ref|YP_710302.1| DNA polymerase III subunit beta [Frankia alni ACN14a]
 gi|111147040|emb|CAJ58687.1| DNA polymerase III, beta chain [Frankia alni ACN14a]
          Length = 413

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 96/402 (23%), Positives = 172/402 (42%), Gaps = 29/402 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           MK  VER +  E +    R +  + T  + V   +LL A   +L++ A   E+   G + 
Sbjct: 22  MKFRVERDEFTEAVAWTARTLPSRPTTQLQVLSGLLLDATGPMLKVAAYDYEVAAQGTVH 81

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  LL +I R L              GT + I+ G++ F L   P  ++
Sbjct: 82  ATVSEEGRALVNGKLLAEITRALPAAP----VDLGIDGTRLVITCGNARFALPMLPVDDY 137

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      V +  +  S     V +   A   ++    L G+   I  + L L   ATD 
Sbjct: 138 PALPAMPPV-TGHIEGSAFAAAVAQVAIAAGRDDTLPVLTGVRIEIEGDTLTL--AATDR 194

Query: 179 HRLAVAEVDIVAQIAKMPS--------IIVPRKAVGEILRILSSKDSSVKVSLS-----E 225
           +RLAV  +      +             +VP + + +  + LS     V ++L      E
Sbjct: 195 YRLAVRSLKWRPDDSAGEGDAAAPVTVALVPARTLLDTAKSLSGSGVEVSIALGTGPSGE 254

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           +       +   + RL++G+FP ++ ++P S+    ++    L++AV RV+++++ +   
Sbjct: 255 TLAGFAGSTRQTTTRLLEGQFPPFRKLLPDSSPLIAQLEIAPLQEAVKRVALVAA-KTAP 313

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V+LS S D L +        +A E++ V Y+   + + FN  YLL+ +  + SD V    
Sbjct: 314 VQLSFSPDHLVLEAGTGGEAQATETLPVTYDGPELSVAFNPSYLLDALGALESDIVRIGF 373

Query: 346 VVFRLD--SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   ++N    + GK  D     D      Y+LMP+R+
Sbjct: 374 ASAEDPAVAANKPAILTGKADDDGEVPD----YRYLLMPIRL 411


>gi|119492671|ref|ZP_01623850.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106]
 gi|119453009|gb|EAW34180.1| DNA polymerase III subunit beta [Lyngbya sp. PCC 8106]
          Length = 391

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 95/407 (23%), Positives = 195/407 (47%), Gaps = 40/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M+  VE+  +   L    R I  + T P+  ++LL+A      L + A    + I  ++ 
Sbjct: 1   MRFIVEQEKLSSNLSLISRAIPSRPTHPILSNILLEATAETQQLSLTAFDLSLGIYTSMS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V+V G  T+ A LL DIV +L +        ++   + + ++     + ++     E+
Sbjct: 61  AEVEVGGRFTLPAKLLNDIVSRLPNSPI--ALDDDAGESIITLNSSSGRYQVRGMGAEEY 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S +L +  L   ++ T FA + +E +  L G+   I  E+L+    +TDG
Sbjct: 119 PALPSIEDGESIQLPADALIEGLKGTLFATSPDETKQVLTGVHLKIQSENLEF--ASTDG 176

Query: 179 HRLAVAEVD----------IVAQIAKMPSIIVPRKAVGEILRIL-------SSKDSSVKV 221
           HRLAV + +          I     +   + +P +A+ E+ R++             VK+
Sbjct: 177 HRLAVVKAESLNGDDQSEAISTAKIEDFEVTIPARALREVERMIAAASPGKEDSKLMVKL 236

Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
              ES++   + +  ++ R ++G +P YQ +IP     ++ V+  N   A++R+++++S 
Sbjct: 237 RFDESQVIFELGNQRLNSRKLEGSYPAYQQLIPNQFLNQINVDRRNFLGALERIAVLASQ 296

Query: 282 RIQAVKLSLSSD--KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISS 338
           +   VK ++ +D  K+ ++V+  D+G A+ES++   +   P ++ FN KYL+E +  +++
Sbjct: 297 KNDIVKCTIDNDNQKISLSVEAADVGNALESLSAQVSGDEPKELAFNVKYLMEGLKVLNT 356

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 E+  +L+++ S V +              V   Y++MP+++
Sbjct: 357 S-----EIQIQLNAATSPVILSP---------LGGVKMTYLVMPVQL 389


>gi|257455165|ref|ZP_05620403.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60]
 gi|257447498|gb|EEV22503.1| DNA polymerase III, beta subunit [Enhydrobacter aerosaccus SK60]
          Length = 391

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 114/410 (27%), Positives = 206/410 (50%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ + R  +L+ +    +  ++++ + +  ++ L   D  L + AS  E+E+   +   
Sbjct: 1   MQLVISRDLLLQAINLISKAADKRHNMVILGNMKLALTDSQLVMVASDLELELQATLNLP 60

Query: 60  --SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G ITV A+   DIV+ L DG  +S    N+   +  I  G S F L + P  +
Sbjct: 61  ASACKQPGEITVPANKFKDIVKLLPDGLPVSISVGND--NQCLIVCGSSRFKLSTLPAQD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E E V   +L    L +L+++THFAMA +++RYYL G+ F + E   +L  V+TD
Sbjct: 119 FPLLGEPEQVTPIQLGREDLVDLLDKTHFAMAVQDVRYYLTGMLFEVKER--QLATVSTD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKA-------VGEILRILSSKDSSVKVSLSES--RI 228
           GHRLA+A   I    +   + I+PRKA       + E+ R+L ++D+ + +++     ++
Sbjct: 177 GHRLALARTVIACDDSVALAAILPRKAVLELQRLLAELKRMLPNQDNKITLNVGREFLQV 236

Query: 229 HLNIESL------------SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            L    +            + + RLIDG+FP+Y+ V+P   +K  R++   L   + RV+
Sbjct: 237 LLPFGEVDSTGQLKNAIMVAFTARLIDGKFPDYRRVMPSLTNKIARISQEQLANVLRRVA 296

Query: 277 IMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           I+S+ + + V    S  + L +   N +  +A E + V Y   P++I FN  YLL++++ 
Sbjct: 297 ILSNEKSRGVIFDFSGDNNLMVRASNAEQDEASEQLEVKYQGEPLEISFNVAYLLDVLNV 356

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +        E+ F +  +N+SV ++  +              +V+MPMRI
Sbjct: 357 LQG------EIDFHMSQANASVLVQQVNDSKHE---------FVVMPMRI 391


>gi|148543245|ref|YP_001270615.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016]
 gi|184152657|ref|YP_001840998.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112]
 gi|227364308|ref|ZP_03848401.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3]
 gi|325683507|ref|ZP_08163023.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           MM4-1A]
 gi|148530279|gb|ABQ82278.1| DNA polymerase III, beta subunit [Lactobacillus reuteri DSM 20016]
 gi|183224001|dbj|BAG24518.1| DNA polymerase III beta subunit [Lactobacillus reuteri JCM 1112]
 gi|227070621|gb|EEI08951.1| DNA polymerase III, beta subunit [Lactobacillus reuteri MM2-3]
 gi|324977857|gb|EGC14808.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           MM4-1A]
          Length = 380

 Score =  297 bits (761), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T+ RS  +  L +  R I  K TIP+   + +  N+  + +  S  +I I   I A+
Sbjct: 1   MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    DIV+KL D        E   G + +I+ G + F +   
Sbjct: 61  DADNDLTIEETGAIVLPARFFSDIVKKLPDKKV---TIEVTSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   S  L + +LK ++ +T  A++ +E R  L G+   +   D  L A
Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGVHMMLK--DGVLTA 175

Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRLA  +V +          +I+P K++ E+  ++S     V++ ++E+++    
Sbjct: 176 VATDSHRLAQRKVVLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290
            +     RL++G +P    +IP + D  + +       +++R S++S   R   VKLSL 
Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLK 295

Query: 291 -SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            S + + ++ D+PD+G   E  +    +   ++I FN  Y+ + + +          +  
Sbjct: 296 PSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYMKDALRSFGQAT-----IKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              S      +   +         + N  +++ P+R
Sbjct: 351 SFTSPLRPFTLVPTED--------QENFVHLITPVR 378


>gi|187933007|ref|YP_001884267.1| DNA polymerase III subunit beta [Clostridium botulinum B str.
           Eklund 17B]
 gi|187721160|gb|ACD22381.1| DNA polymerase III, beta subunit [Clostridium botulinum B str.
           Eklund 17B]
          Length = 366

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 189/385 (49%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M    E+  +L+ +    + I  K+T+ V   + + A +  L +  S  ++ I   + A 
Sbjct: 1   MIFICEKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVNAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A +  +I+RKL +        + ++   + I+   S F +      EFPS
Sbjct: 61  VLDKGEIVIDAKIFGEIIRKLPNSDIKIETVKEDV---IQITCEKSVFNVVCMNAEEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     E+  S+LKN+++ T F++A +E R  L GI F + + +L L  VA DG+R
Sbjct: 118 LPNINEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRNLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I     +++P K + E+ +IL   D +V ++ + + I  N+E+  +  R
Sbjct: 176 LAIRSEFLDNDI--NLEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L+DG+F NY +++P  +   + V     +  ++R S+M+       + L L  + L +T 
Sbjct: 234 LLDGKFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E +++      ++I FN +YLL+++ N+ S     DEV+  + S  S   I
Sbjct: 294 -NSQLGKVREEVSINLQGDEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           + KD +         N+ Y+++P+R
Sbjct: 348 KEKDGE---------NSQYLVLPVR 363


>gi|57239515|ref|YP_180651.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58579497|ref|YP_197709.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str.
           Welgevonden]
 gi|57161594|emb|CAH58522.1| DNA polymerase III, beta subunit [Ehrlichia ruminantium str.
           Welgevonden]
 gi|58418123|emb|CAI27327.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str.
           Welgevonden]
          Length = 375

 Score =  297 bits (760), Expect = 2e-78,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 22/387 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
              V +  +L+ L +   I+E++++I V   V ++A D  + + ++  +I I  +I A+V
Sbjct: 8   NFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISANV 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
            V G I VSA LLYDIVRKL +  +I F    +    + I    + F L      +FP  
Sbjct: 68  LVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKD--GRLTIECSRTEFSLPIVDIEKFPVI 125

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +  E    F L  S L NL  +T FA++ EE R+ LNG++ H +  +  LC  ATDGHRL
Sbjct: 126 EHNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTS--NGALCCAATDGHRL 183

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESLSMSV 239
           ++A++  V  I     IIVP+K V EIL+I+S  +    + +SLS  +I    +   +  
Sbjct: 184 SLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYILIS 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG FP+Y ++IP S+DK + ++   L  A+DRVS++   +++ +KL  + +KL ++ 
Sbjct: 244 KVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLILSA 303

Query: 300 DNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D G A E + +  Y+   + I  N +YL+E +  I        +       +N+++ 
Sbjct: 304 ASSDQGDAREELEIDTYSTSEITIGLNARYLMEALYCIKG------KCHLSFYDANTAIL 357

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D D         +A Y++MPMRI
Sbjct: 358 IQEQDND---------DAMYIIMPMRI 375


>gi|302872924|ref|YP_003841557.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B]
 gi|307687877|ref|ZP_07630323.1| DNA polymerase III subunit beta [Clostridium cellulovorans 743B]
 gi|302575781|gb|ADL49793.1| DNA polymerase III, beta subunit [Clostridium cellulovorans 743B]
          Length = 367

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 104/388 (26%), Positives = 188/388 (48%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T +++++ E +  A + +  K+T+P+   +LL A    L I +S  ++ I     A+
Sbjct: 1   MNFTCDKTNLQEAISIAQKAVTGKSTMPILQGLLLNARGNKLTINSSDIDLGIETKCNAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +   GSI V + L  DI+RKL +   QI    E      + I+   S F L      EFP
Sbjct: 61  IKEEGSIVVDSKLFGDIIRKLPNSEIQIKSISEGT----IEITCQRSRFTLVHMKADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +      +   ++KN++  T FA+A +E R  L GI F I    L L  VA DG 
Sbjct: 117 QLPYIDEDEIISIPQKLIKNMIRSTIFAIAIDETRPILTGILFEIKNRTLNL--VALDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+ +  I  +  +  S ++P K + E+++IL   +  V ++ + + I  N+    +  
Sbjct: 175 RLALKKETIDTE--QEFSAVIPGKTLHEVVKILED-EGDVDITFTTNHILFNLGETKVVS 231

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RL++GEF  YQ +IP  ++  + VN  +L  +++R S++S       +K ++S D + +T
Sbjct: 232 RLLEGEFIKYQAIIPEEHELSISVNRASLLNSIERASLVSKDASSNLIKFNISEDNIVIT 291

Query: 299 VDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             N  +G   E +++       + I FN KYL++ +  +      ++ +  +  S+ S  
Sbjct: 292 S-NSQLGDVREEVSIKLLKGNELQIAFNSKYLIDALKIME-----EETITLQFTSAVSPC 345

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+  + D         N  Y+++P+RI
Sbjct: 346 IIKNIEND---------NVIYLVLPVRI 364


>gi|81251062|gb|ABB69868.1| DNA polymerase III beta chain [Nitrosospira sp. TCH716]
          Length = 369

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATD 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               D   S+TV+A  L DI+R L +  Q++    +   + + +  G S F LQ+ P  +
Sbjct: 61  GGKADEEYSVTVAAKKLQDILRALPERVQVTLETSD---SRLQVKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   + ++    LK+L+    +AMA ++IRYYL      +  E+ +L  VAT
Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++  L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + Y+   +DI FN  YLL++++N        + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|167759578|ref|ZP_02431705.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704]
 gi|167662805|gb|EDS06935.1| hypothetical protein CLOSCI_01935 [Clostridium scindens ATCC 35704]
          Length = 402

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 87/385 (22%), Positives = 187/385 (48%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 34  MKIICSKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDIIKLTANDMELGIQTEIEGQ 93

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        E +   +  I+   + F +   P  EF  
Sbjct: 94  ITERGMIAIDARIFSEIVRKLPDNEV---TIETDSNLQTVITCEKAKFDIAGKPGEEFSY 150

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S E++   LK ++ +T F++A  E    + G  F I +  L++  ++ DGHR
Sbjct: 151 LPIIEKEESIEISQFTLKEIIRQTIFSIADTESNKLMTGELFEIKDNILRV--ISLDGHR 208

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++  Q+     +IVP K + E+ +ILS + +S V +S + + I    ++  +  
Sbjct: 209 ISIRKIELKDQVTD-KKLIVPGKTLIEVSKILSGEIESMVNISYTNNHIVFEFDNTIVVS 267

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++R+N   L   +DR +++      + + +++  + + + 
Sbjct: 268 RLIEGEYFKIDQMLSSDYETKVRINKKELLNCIDRATLLVKEGDKKPIIINIGDELMELK 327

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +      + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 328 IKSQ-VGSMNEEIYISKEGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCF 381

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ N  Y+++P+
Sbjct: 382 I----------KDDEENYIYLILPV 396


>gi|73748915|ref|YP_308154.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1]
 gi|73660631|emb|CAI83238.1| DNA polymerase III, beta subunit [Dehalococcoides sp. CBDB1]
          Length = 378

 Score =  297 bits (760), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS T+ A LL + V  L +         N     +NI        +      +FP 
Sbjct: 61  IEEEGSTTIPAKLLTEFVSSLPNDKI--DLSLNAKSKALNIKCARFEARITGVDSKDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S +++    +  V    FA A +E R  L G+        L L   A DG R
Sbjct: 119 IPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTL--AAADGFR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237
           LAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ +
Sbjct: 177 LAVYKLPLLESVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291
             +L+ G FP Y  +IP S    + V+      A    +I +      V+L        +
Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDTT 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             KL ++  + ++G     ++         I FN KYLL+++  + +      +V   + 
Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S +S   I+    D         N  +V+MPM
Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|58617550|ref|YP_196749.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel]
 gi|58417162|emb|CAI28275.1| DNA polymerase III, beta chain [Ehrlichia ruminantium str. Gardel]
          Length = 375

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 22/387 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
              V +  +L+ L +   I+E++++I V   V ++A D  + + ++  +I I  +I A+V
Sbjct: 8   NFCVGKDKLLQALSYINSIVEKRHSIVVLSCVRIEAQDKKISLTSTDLDISIVASISANV 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
            V G I VSA LLYDIVRKL +  +I F    +    + I    + F L      +FP  
Sbjct: 68  LVDGVIVVSAQLLYDIVRKLPNDFEIKFTIGKD--GRLTIECSRTEFSLPIVDIEKFPVI 125

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +  E    F L  S L NL  +T FA++ EE R+ LNG++ H +  +  LC  ATDGHRL
Sbjct: 126 ENNELQDKFTLQVSELVNLFGKTKFAISAEESRFNLNGVYVHTS--NGALCCAATDGHRL 183

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESLSMSV 239
           ++A++  V  I     IIVP+K V EIL+I+S  +    + +SLS  +I    +   +  
Sbjct: 184 SLAKLSKVEDIVSDFGIIVPKKTVNEILKIISHGNSSDPISISLSNRKICFEYKEYILIS 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG FP+Y ++IP S+DK + ++   L  A+DRVS++   +++ +KL  + +KL ++ 
Sbjct: 244 KVIDGIFPDYNSIIPKSHDKNVLIDSEVLSNAIDRVSVVVFDKVKVIKLKFTDNKLILSA 303

Query: 300 DNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D G A E + +  Y+   + I  N +YL+E +  I        +       +N+++ 
Sbjct: 304 ASSDQGDAREELEIDTYSTSEITIGLNARYLMEALYCIKG------KCHLSFYDANTAIL 357

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ +D D         +A Y++MPMRI
Sbjct: 358 IQEQDND---------DAMYIIMPMRI 375


>gi|298209075|ref|YP_003717254.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559]
 gi|83849002|gb|EAP86871.1| DNA polymerase III, beta chain [Croceibacter atlanticus HTCC2559]
          Length = 362

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 97/376 (25%), Positives = 172/376 (45%), Gaps = 17/376 (4%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           ++ L     +I   NT+P+  + L + ++  L+I AS  E  +   I    D  GSI V 
Sbjct: 1   MKQLQVLGGVINTSNTLPILDNFLFELDNNSLKISASDLETTMVSTIDVESDSQGSIAVP 60

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
           A LL D ++   +       ++N     + IS     + +      EFP+    E     
Sbjct: 61  ARLLLDTLKTFPEQPLTFVKEDN---NTIEISSNHGKYAVAYADGEEFPNAVALEDPSQT 117

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            L   VL   + +T FA   +++R  ++G+FF   ++ L    VATD H+L         
Sbjct: 118 VLNGDVLATAISKTIFASGNDDLRPVMSGVFFQFAKDGLTF--VATDAHKLVKYSRT-DV 174

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
                   I+P+K +  +  IL+  DS V V  +ES      +++ +  RLIDG++PNY+
Sbjct: 175 SATNEAEFIMPKKPLTLLKGILAGSDSDVTVEYNESNARFTFDNVELICRLIDGKYPNYE 234

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIE 309
            VIP  N  +L ++ +    +V RVSI S+     V+L ++  +L ++ ++ D   KA E
Sbjct: 235 AVIPKENPNKLTIDRSQFLNSVKRVSIFSNKTTHQVRLKIAGSELNISAEDIDYSNKAEE 294

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
            +   Y    M I FN ++L E+++N++++     EV   +   N +  +   D      
Sbjct: 295 RLTCAYQGDDMQIGFNSRFLSEMLNNLNAN-----EVQLEMSLPNRAGILTPVD-----G 344

Query: 370 KDNKVNAFYVLMPMRI 385
            D       ++MP+ +
Sbjct: 345 LDEGELVTMLVMPVML 360



 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 20/100 (20%), Positives = 34/100 (34%), Gaps = 9/100 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+T++RS  L  +     I   K T      V L+     L I A   +         + 
Sbjct: 244 KLTIDRSQFLNSVKRVS-IFSNKTTHQ----VRLKIAGSELNISAEDIDYSNKAEERLTC 298

Query: 62  DVCG---SITVSAHLLYDIVRKLQ-DGAQISFFKENELGT 97
              G    I  ++  L +++  L  +  Q+     N  G 
Sbjct: 299 AYQGDDMQIGFNSRFLSEMLNNLNANEVQLEMSLPNRAGI 338


>gi|300780157|ref|ZP_07090013.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           genitalium ATCC 33030]
 gi|300534267|gb|EFK55326.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           genitalium ATCC 33030]
          Length = 418

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 82/399 (20%), Positives = 171/399 (42%), Gaps = 28/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+ + +    R +  KNT PV   V++ A+D  LE      E+     I A VD
Sbjct: 30  FRVHKDDLSDAVAWVARNLPTKNTQPVLRAVVITADDNGLEFAGFDYEVSTRVRIAAEVD 89

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G + V+  L+ DIV  +          +N+    + +  G + F L   P  ++P   
Sbjct: 90  QPGRVAVAGKLMADIVSNMPAKPIDVSVADNQ---RLLLQGGSARFELPLMPLDDYPQLP 146

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V +  L ++   + + +   A   ++    L G+   ++    ++   ATD  RLA
Sbjct: 147 VLPEV-TGTLDTTTFVDAITQVASAAGRDDTLPMLTGVHMEVSGN--RVQLAATDRFRLA 203

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIE 233
           +  ++   +   + + +++P K + +  R L +  +  V++++        +    L+  
Sbjct: 204 LRSLEWEPKAPDVEAKLLIPAKTLLDNARTLDTHLEEPVEIAVGSGDNVGGDGLFGLHSG 263

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D EFPN Q ++P ++     V    L +A+ RVS+++  R   +++     
Sbjct: 264 NRETTTRMLDAEFPNIQPLLPKTHTSMASVEIAPLMEAIRRVSLVA-DRNAQLRMHFQPG 322

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ +     + G+A ES+   +     + I FN  YL + ++ I +     D VVF    
Sbjct: 323 EVTLFASGAESGEASESLQCAFTGADELLIAFNSGYLRDGLNVIHT-----DRVVFGFTE 377

Query: 353 SNSSVFIRGKDKDSKNNKDNK------VNAFYVLMPMRI 385
           ++    +  +  +      +        N  Y+LMP+R+
Sbjct: 378 ASRPAIMVPEPDELPEAAADGSFETPATNFTYLLMPVRL 416


>gi|289422499|ref|ZP_06424342.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius
           653-L]
 gi|289157071|gb|EFD05693.1| DNA polymerase III, beta subunit [Peptostreptococcus anaerobius
           653-L]
          Length = 367

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 184/386 (47%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +  +   + +A + I  + TI +   +L    + +L +     E+ I   I AS
Sbjct: 1   MKLICGQKKLANAINNAQKAINNRTTIELLRGILFSTKEDMLTVTGYDNELCIETKIDAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I V++ L+ DI+RKL D        E+     + IS  +S + ++     EFP 
Sbjct: 61  VSKAGKIVVNSKLVGDIIRKLPDSMVSIEVDED---YNMFISCLNSRYKIKGINAEEFPV 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E     +   + +++++ +T FA A E +   L G    ++E  + + AV  DG+R
Sbjct: 118 VADLETEKMIKFNQAEMRHMIRQTVFATANEPVNPILAGELIEVSEGHINMAAV--DGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV +  +    +   S+IVP   +  +  +LS  D    + +    I   + +  ++ R
Sbjct: 176 LAVRKSILEDSSSDDISVIVPGTTLNHLNSLLSD-DGDFYMGVDPKNIVFVLGNTKITAR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           L+DG F  Y +++P     ++ VN  NLR++V+R +++ SS +   +K+S+SS  + +T 
Sbjct: 235 LMDGNFTKYDSLLPKEYMSKVLVNTRNLRESVERAALLFSSEKNNIIKVSVSSGMMVITA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N + G A E +N+      ++I FN +Y L+ I NI S     + +   L    +   I
Sbjct: 295 NN-ENGNAYEEINIELEGEDLEIAFNSRYFLDGIKNIDS-----EFIEIELGGPVNPCII 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D          V   Y+++P+R+
Sbjct: 349 KPVD---------GVEYIYLILPVRV 365


>gi|327404393|ref|YP_004345231.1| DNA polymerase III subunit beta [Fluviicola taffensis DSM 16823]
 gi|327319901|gb|AEA44393.1| DNA polymerase III, beta subunit [Fluviicola taffensis DSM 16823]
          Length = 372

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 180/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V  +++L  L     ++   NT+P+  + L    D  L I AS  E  +   +   
Sbjct: 1   MNFIVSSTNLLRHLQSISGVLSTSNTLPILDNFLFTITDSQLIISASDLETTMQTTMEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + A +L D+++ L D      FK ++   EV I++ +    +  F   EFP 
Sbjct: 61  ATDSGKVAIPAKMLLDVLKNLPDQP--CTFKIDDSKYEVEIAYDNGKSKMVGFNGEEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           T   E   S  ++  ++ + + +T FA   +++R  ++G++   +  D+    VATD H+
Sbjct: 119 TPTIENSTSIRISGEIISSAINKTLFAAGNDDLRPVMSGMYCQFSPSDITF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V       Q     + I+P+K +  +   L   D  V++  ++S        + +  R
Sbjct: 177 L-VRYRRSDGQATNGAAFILPKKPLNLLKSNLR-GDEEVQLEYTDSNAIFTFNDIVLMCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N   L V+      A+ RVSI ++     VKL ++  +L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNILIVDRMQFLGAIKRVSIFANKTTHQVKLKIAGSELNVSAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E +   Y+   ++I FN ++L+E+++NI +      EV   +   + +  +
Sbjct: 295 DLDFSNEANERLTCNYDGTDIEIAFNSRFLMEMLNNIDAA-----EVKMAMSEPSRAGLL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++++      +   ++MP+ I
Sbjct: 350 MPNTSENES-----EDILMLVMPVMI 370


>gi|253573853|ref|ZP_04851195.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
 gi|251846330|gb|EES74336.1| DNA polymerase III, beta subunit [Paenibacillus sp. oral taxon 786
           str. D14]
          Length = 380

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 191/396 (48%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + + D+ E + H  + I  + TIP+   + L  N   + + AS  +I I   IPA 
Sbjct: 1   MKIRILKHDLNESIQHVSKAISSRTTIPILTGIKLDVNFQGMTLTASDTDISIQAFIPAE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL          E + G +  I  G ++  +  
Sbjct: 61  DQEKQIVQVERPGSVVLPAKFFVEIIKKLPSSEI---EMEVQDGFQTFIRSGSTDIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E      +   +LKN++ +T F+++T E    L G+ +++ +   K  
Sbjct: 118 LDPEEFPVLPSIEENQVISIPGDLLKNMIRQTVFSISTNETSPILTGVLWNLADNQFKF- 176

Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +  A+  +  +I++  K + E+ +I+  +++ V++ ++++++   
Sbjct: 177 -VATDRHRLASRIAGLDDAEGVRFSNIVIAGKTLNELSKIIPDQNTRVEIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           I+ +    R++DG +P+   +IP +   EL ++   L  ++DR  ++S   +   V+L +
Sbjct: 236 IDRVLFYTRILDGTYPDTSKIIPTTYKTELILDTKKLSDSIDRAYLLSREEKTNIVRLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +    + ++  + ++GK  E ++V  ++  P+ I FN KY+L+++  + S     +++  
Sbjct: 296 MEDGTIEISSSSSELGKVTEQLDVAHFSGDPLRISFNSKYMLDVLKVVES-----EQLHI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               + S + I+  D            + Y+++P R
Sbjct: 351 GFTGAMSPIIIKPVDDSQ---------SLYLILPYR 377


>gi|71064583|ref|YP_263310.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4]
 gi|71037568|gb|AAZ17876.1| DNA polymerase III, beta subunit [Psychrobacter arcticus 273-4]
          Length = 391

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 108/410 (26%), Positives = 203/410 (49%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++++ R  +L+ +    +  ++++ + +  ++ LQ ++  L + AS  E+E+T  +   
Sbjct: 1   MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLSESELVLTASDLEVELTSTLKLP 60

Query: 60  --SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G+ T+ A  L DI + L   AQ++     +      ++ G S F L + P  +
Sbjct: 61  AGACVQAGTTTLPATKLRDICKSLPAQAQVNLTT--QENERCLLTSGKSRFTLGTLPSED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS    E +    ++ S L +L+ +T FAMA +++RYYL G+ F ++++  +L  VATD
Sbjct: 119 YPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSES--RI 228
           GHRLA+A   I          I+PRKAV        E+ ++L  +D++V +S      ++
Sbjct: 177 GHRLALARSVIDVNADLNMQAILPRKAVIELERLASELGKMLGDQDNAVTLSFGREFLQV 236

Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            L                ++ + RLIDG+FP+Y+ V+P + DK    N   +   + RV+
Sbjct: 237 SLPFGDVDSAGQTSQNLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVA 296

Query: 277 IMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           I+S+ + + V  +  S   + +  +N +  +A+E +   Y   PM++ FN  YL +++  
Sbjct: 297 ILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGV 356

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  D      +   +  SN+SV +   + +            YV+MPMRI
Sbjct: 357 IQGD------LQMHMSQSNASVLVNQLNDEFHQ---------YVIMPMRI 391


>gi|167770839|ref|ZP_02442892.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM
           17241]
 gi|167666879|gb|EDS11009.1| hypothetical protein ANACOL_02192 [Anaerotruncus colihominis DSM
           17241]
          Length = 367

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 183/386 (47%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++  ++  +++ + +  R +  KNT+     VLL+A +  L +     E+ I+  I A 
Sbjct: 1   MQLICDKQLLVDAVANVSRAVSSKNTLAALEGVLLRAKNNTLSLTGYDLELAISTEIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I +SA +  D++R++    QIS   + ++ T   +    + + +   P SE+P 
Sbjct: 61  VREAGEIVLSARIFLDMIRRMP-SEQISISSDAKMLT--LVKGSMTEYTILGLPASEYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      +  + LKN++ +T FA+A  + +    G  F I   +  LC V+ DG+R
Sbjct: 118 LPGVSETTELSIPQAALKNMISQTLFAIAVSDSKPVHTGSLFDIKGGE--LCLVSVDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +     +  S IVP K++ E+ ++L  ++  V++ ++   I     S  +  R
Sbjct: 176 LALRREKVA--FDETLSFIVPGKSLSEVSKLLRDEEGDVELGVARRHIIFRTGSYRIVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299
           L++GEF +Y+  IP      +++   +L  A+DR S++ S  I+  +++      + ++ 
Sbjct: 234 LLEGEFLDYRAAIPEGGATTVKIGTRDLISAIDRASLLISDNIKSPLRMKFEEGLIKISC 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +GKA + +    +   ++I FN +Y+L+ +          DE+   ++   S + +
Sbjct: 294 STA-IGKAYDEIRCEQSGDDVEIGFNSRYMLDALKASEG-----DEIRVLINGPLSPIKL 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D+           ++++P+R+
Sbjct: 348 MPVEGDA---------FVFLVLPVRL 364


>gi|289432911|ref|YP_003462784.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT]
 gi|288946631|gb|ADC74328.1| DNA polymerase III, beta subunit [Dehalococcoides sp. GT]
          Length = 378

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS T+ A LL + V  L +         N     +NI        +      +FP 
Sbjct: 61  IEEEGSTTIPAKLLTEFVSSLPNDKI--DLSLNAKSKALNIKCARFEARITGVDSKDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S +++    +  V    FA A +E R  L G+        L L   A DG R
Sbjct: 119 IPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTL--AAADGFR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237
           LAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ +
Sbjct: 177 LAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291
             +L+ G FP Y  +IP S    + V+      A    +I +      V+L        +
Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTRVVVDANQFLMATKTATIFARDGGGIVRLMMNPGGDTT 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             KL ++  + ++G     ++         I FN KYLL+++  + +      +V   + 
Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S +S   I+    D         N  +V+MPM
Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|256389234|ref|YP_003110798.1| DNA polymerase III subunit beta [Catenulispora acidiphila DSM
           44928]
 gi|256355460|gb|ACU68957.1| DNA polymerase III, beta subunit [Catenulispora acidiphila DSM
           44928]
          Length = 396

 Score =  296 bits (759), Expect = 3e-78,   Method: Composition-based stats.
 Identities = 92/407 (22%), Positives = 166/407 (40%), Gaps = 39/407 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-------NDGLLEIKASGPEIEI 53
           MK  VER  + E +    R +  +   PV   ++ +A       + G + +     E+  
Sbjct: 1   MKFRVERDVLSEAVAWTARSLPSRPAAPVLAGLVFEAVEGEGGEDHGSVTLSGFDYEVSS 60

Query: 54  TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
              I A V   G I +   LL DI + L +       +    G++V +S G S F LQ+ 
Sbjct: 61  RAQIGADVTEPGRILIHGKLLADIAKSLPNRPVEFSTE----GSKVLLSCGSSRFTLQTL 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  ++P+            AS +    V +   A   ++    L GI   I  E  K+  
Sbjct: 117 PVEDYPALPTMPTATGAVTASGLAG-AVSQVAIAAGRDDTIPMLTGIRVEIEGE--KITL 173

Query: 174 VATDGHRLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-----ESR 227
           VATD  RLAV E+    +   M +  ++P K + +  + L+  D  V ++LS     E  
Sbjct: 174 VATDRFRLAVRELQWKPEQDDMSATALIPSKVLSDTAKALTGGD-WVSLALSGGDAGEGL 232

Query: 228 IHLNIE---------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           I              S  M+ RL+ GEF  Y+++ P   +    V      +A  RVS++
Sbjct: 233 IGFESGEGTSGKAKGSRRMTSRLLSGEFVKYRSLFPNEYNITATVETAPFLEAAKRVSLV 292

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
           +  R   +KL+ +  ++ +     D  +A E+M+   +   + + FN  +LL+ +  I +
Sbjct: 293 A-DRTSPIKLAFTQGEVTLEAGAGDEAQASEAMDAVLDGEDISVSFNPSFLLDGLQVIDT 351

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                         ++    + G+      +   +    Y++MP+R+
Sbjct: 352 QY-----AQLSFTVASKPAVLMGR---PALDAPAQEEFRYLMMPLRV 390


>gi|253581086|ref|ZP_04858346.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39B_FAA]
 gi|251847622|gb|EES75592.1| conserved hypothetical protein [Ruminococcus sp. 5_1_39BFAA]
          Length = 371

 Score =  296 bits (759), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 181/387 (46%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ ++L+ +  + + +  K T+P+   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKIICQKINLLKSVNISLKAVPSKTTMPILECILIDATTNQIKFTTNDMELGIETIVDGI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I + A + Y+I+R+L D        E    T   I+   + F +      +F  
Sbjct: 61  IEEKGIIALDAKIFYEIIRRLPDNTVTIKTDEKLTAT---ITCEKAKFTIPGKSGEDFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  ++   LK ++ +T F++A+ E    + G  F I    LK+  V+ DGHR
Sbjct: 118 LPLIEKEESLTISQFTLKEMIRQTIFSIASNETNKLMTGELFEIKNNYLKI--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A+  +++    A    ++VP K + EI +ILS + D  V +  S++ I    +   +  
Sbjct: 176 IAIRRMELKKDYADR-KVVVPGKTLNEISKILSGEIDDIVNIYFSKNHILFEFDQTIVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLIDGE+     ++    + ++++N       +DR +++      + + + ++ + + + 
Sbjct: 235 RLIDGEYFRIDQMLSSDYETKIKINKKEFLDCIDRATLLVREGEKKPIIIEITDNSMELR 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  MG   E++++      + I FN ++L++ +  I      D+ +   L +  +  F
Sbjct: 295 IDSA-MGSMNENIDIDKEGKDILIGFNPRFLIDALKVID-----DETISIYLVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          D++ N  Y+++P+ I
Sbjct: 349 IR----------DDEENYTYLILPVNI 365


>gi|84394124|ref|ZP_00992858.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01]
 gi|84375270|gb|EAP92183.1| DNA polymerase III subunit beta [Vibrio splendidus 12B01]
          Length = 304

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 100/323 (30%), Positives = 180/323 (55%), Gaps = 20/323 (6%)

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GSITV +    DI R L D + I+   +   G  V +  G S F L + P ++FP+ +
Sbjct: 2   EAGSITVPSRKFLDICRGLPDSSVITVVLD---GDRVQVRSGRSRFSLATLPAADFPNIE 58

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +        +  + L+ L+E+T F+MA +++RYYLNG+ F I    L+  +VATDGHR+A
Sbjct: 59  DWSSEVEVSVTQAELRGLIEKTQFSMANQDVRYYLNGMLFEIEGSILR--SVATDGHRMA 116

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           V++  + A  A+   IIVPRK V E++++L + +  V + +  S +   + +   + +L+
Sbjct: 117 VSQAQLGADFAQ-KQIIVPRKGVQELVKLLDAPEQPVTLQIGNSNVRAEVNNYVFTSKLV 175

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P +  K L   C  LR A  R +I+S+ + + V+++L   ++ +T +NP
Sbjct: 176 DGRFPDYRRVMPQNTTKTLEAGCDELRSAFSRAAILSNEKFRGVRVNLVDTEMRITANNP 235

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +  +A E ++V ++   ++I FN  Y+L++++ +       ++V   +  +N+S  I   
Sbjct: 236 EQEEAEEVLDVTFDGDALEIGFNVSYVLDVLNTLRC-----EQVRISMSDANASALIENA 290

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
             DS         A YV+MP+R+
Sbjct: 291 QDDS---------AMYVVMPIRL 304


>gi|307243425|ref|ZP_07525582.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM
           17678]
 gi|306493235|gb|EFM65231.1| DNA polymerase III, beta subunit [Peptostreptococcus stomatis DSM
           17678]
          Length = 367

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 189/386 (48%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  +   + +A R I  K T+ +   +L+ A D  L+++    EI I   I A 
Sbjct: 1   MKILCNQKKLAHAITNAQRAINTKTTVEILRGILISAEDNKLKVRGYDNEISIETEIEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++ GSI +++ L+ +IVRKL D        E +    V IS   S F ++     +FP+
Sbjct: 61  VELAGSIVINSKLIGEIVRKLPDS---YISIETDDNFNVFISCMSSRFKIKGISAEDFPN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     +++ + +KN++  T FA AT+      NG    I+ E  K+   A DG+R
Sbjct: 118 IDSIEVGDMLKISQADMKNMIRNTVFAAATDNSNQTFNGELIEIDSE--KINMAALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA       + + K  S IVPR  +  +  +LS  D  + +++S   +    ++  +  R
Sbjct: 176 LATMTNPFKSGVDKNLSAIVPRNTLNHLNSLLSD-DGDLYIAISPRDVVFKFDNTRLVGR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           LIDGE+ +Y++++P     ++ V    L++AV+R S++ +S +   +K++++   L +T 
Sbjct: 235 LIDGEYADYKSLLPKEYVTKISVETKKLQEAVERASLLFTSDKNNTIKMTVTDKLLVITS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N + G A E + V +    +DI FN +Y L+ I  ++S     + V      + +   I
Sbjct: 295 NN-ENGNAYEEIGVEFEGDMLDIAFNSRYFLDGIKYLNS-----EYVSIEFLGAINPCVI 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D          +   Y+++P+RI
Sbjct: 349 KPLDD---------IEYTYLILPVRI 365


>gi|81251058|gb|ABB69865.1| DNA polymerase III beta chain [Nitrosospira sp. TCH711]
          Length = 369

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATD 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               D   S+TV+A  L DI+R L +  Q++    +   + + +  G S F LQ+ P  +
Sbjct: 61  GGKADEEYSVTVAAKKLQDILRALPERMQVTLETSD---SRLQVKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   + ++    LK+L+    +AMA ++IRYYL      +  E+ +L  VAT
Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++  L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTGNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + Y+   +DI FN  YLL++++N        + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|309792259|ref|ZP_07686731.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6]
 gi|308225800|gb|EFO79556.1| DNA polymerase III, beta subunit [Oscillochloris trichoides DG6]
          Length = 377

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 173/394 (43%), Gaps = 27/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++   L      +  K+T+PV  +VLL  + G L++ A+  ++ IT  I A 
Sbjct: 1   MKLTCLQENLKRGLATVSHAVAGKSTLPVLSNVLLATDGGRLKLAATNLDVGITHWIGAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV A LL D++  L +         +     V +        ++     EFP 
Sbjct: 61  VQEEGAITVPAKLLADVIGGLPNDRVTLTL--DARTQTVKVECARYTSNIKGIEAEEFPI 118

Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    +  L+ + L+  +++  FA A+++ R  L G+   + E   +L   A DG 
Sbjct: 119 IPTVSDRAPAVSLSPATLREAIDQVAFAAASDDTRPVLAGVLVRLREN--RLTFAAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237
           RLA   V +   +A+    IVP +++ E+ RI +  +  + +++S S  +   + E+  +
Sbjct: 177 RLATRVVQLPEAVAQPQEFIVPARSLVELARIAADSEGQISLTMSPSGGQALFHTENTEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------ 291
             RLIDG+FP+++ +IP        ++   L +AV   S  ++     VKL+L       
Sbjct: 237 VSRLIDGKFPDFERIIPSQYLTRSILDTAELAKAVKLASFFANPSQNVVKLTLEPGGELG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L ++ +  ++G     ++   +     I  N KYL + I  I +      +V     
Sbjct: 297 PGRLVISANAAEVGDNTGEIDGMIHGEGGQIALNVKYLADAIAAIKTA-----QVALETQ 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S +    +   ++            +++MPM +
Sbjct: 352 GSQNPGVFKPVGQE---------GYVHIVMPMSL 376


>gi|194467404|ref|ZP_03073391.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23]
 gi|194454440|gb|EDX43337.1| DNA polymerase III, beta subunit [Lactobacillus reuteri 100-23]
          Length = 380

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 176/396 (44%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T+ RS  +  L +  R I  K TIP+   + +  N+  + +  S  +I I   I A+
Sbjct: 1   MNFTINRSAFISQLNNVLRAISSKTTIPILTGLKMVVNEDNIVLTGSNSDITIESVINAN 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    DIV+KL D        E   G + +I+ G + F +   
Sbjct: 61  DADNDLTIEDTGAIVLPARFFSDIVKKLPDKKV---TIEVTSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   S  L + +LK ++ +T  A++ +E R  L G+   +   D  L A
Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGVHMTLK--DGILTA 175

Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRLA  +V +          +I+P K++ E+  ++S     V++ ++E+++    
Sbjct: 176 VATDSHRLAQRKVVLENIDNGIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL- 290
            +     RL++G +P    +IP + D  + +       +++R S++S   R   VKLSL 
Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLK 295

Query: 291 -SSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            S + + ++ D+PD+G   E  +    +   ++I FN  Y+ + + +          +  
Sbjct: 296 PSENLVRISGDSPDIGTVEEEVVTSALDGNDLEISFNPNYMKDALRSFGQAT-----IKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              S      +   +         + N  +++ P+R
Sbjct: 351 SFTSPLRPFTLVPTED--------QENFVHLITPVR 378


>gi|255326480|ref|ZP_05367562.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296]
 gi|255296520|gb|EET75855.1| DNA polymerase III, beta subunit [Rothia mucilaginosa ATCC 25296]
          Length = 374

 Score =  296 bits (758), Expect = 4e-78,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 169/387 (43%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L+ A+ G + I +   E      I A 
Sbjct: 1   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLITASAGEVSIASFDHETSAHQVIAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V   +L +I R L +        E    + + I    +NF L   P  ++P 
Sbjct: 61  VEAEGVCLVPGKILAEICRSLPNAPVEFTADE----SVIRIHCRSANFQLAGMPVVDYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V++   A++ +E    L GI   IN + + L  +ATD +R
Sbjct: 117 LPELPEI-SGTVDGAEFAEAVKQVQIAVSKDETLPLLTGIRVEINGDTMTL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
           LA+ E+           ++++  K V E+   LS S D S+ +  +   I     +   +
Sbjct: 174 LAMREIKWNPVNPDVQAAVLLKAKTVSEVGSTLSGSGDLSIALPAAGELIGFAAGTRRTT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  +   + + 
Sbjct: 234 SVLMDGDYPNIRALFPEQTPIHAVVRTSDLAEAARRISLVA-ERNTPLRLKFTQGSVAID 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D  +A E++  + +   + + +N  YL + +    +     + V F    +     
Sbjct: 293 AGRGDEAQASETLQAHLSGDDITVAYNPAYLSDGLKVFGT-----EFVRFSFTDAPKPAV 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I G+D+      ++  N  Y+LMP+R+
Sbjct: 348 ISGQDEP---LAEDDRNYRYLLMPVRL 371


>gi|332976003|gb|EGK12874.1| DNA-directed DNA polymerase III beta subunit [Psychrobacter sp.
           1501(2011)]
          Length = 391

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 110/410 (26%), Positives = 202/410 (49%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ R  +L+ +    +  ++++ + V  ++ L+  + LL + AS  E+E++  +   
Sbjct: 1   MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAEVKLG 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                V G+ T+ A  L++I + L     ++F  E        I+ G S F L + P ++
Sbjct: 61  NGATGVVGATTLPASKLHEICKLLPKDTMVNFSAE--ANERCVITSGKSRFVLGTLPAAD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP       +    L+ +VL +L+ +T FAMA +++RYYL G+ F + +   +L  VATD
Sbjct: 119 FPVLGTPANITPLTLSRAVLMDLMAKTQFAMAIQDVRYYLTGMLFEVAQR--QLTTVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSES--RI 228
           GHRLA+A   I          I+PRKAV        E+ +++   D ++ +       ++
Sbjct: 177 GHRLALARSVIDVADDFTMQAILPRKAVIELERLGNELGKLVGDNDGNLTLVFGREFLQV 236

Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            L   +            ++ + RLIDG+FP+Y+ V+P S +K    N   +   + RVS
Sbjct: 237 TLPFGNVNSTGQIDDAIKVTFTARLIDGKFPDYRRVMPASTNKVALANKDQMTDVLRRVS 296

Query: 277 IMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           I+S+ + + V    S    + +  +N +  +A+E++ V Y   P+++ FN  YL +++D 
Sbjct: 297 ILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVNYQGEPIELSFNAAYLQDVLDV 356

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D      V   +  +NSSV +         N+ N     YV+MPMRI
Sbjct: 357 LGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391


>gi|72383165|ref|YP_292520.1| DNA polymerase III subunit beta [Prochlorococcus marinus str.
           NATL2A]
 gi|72003015|gb|AAZ58817.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str.
           NATL2A]
          Length = 386

 Score =  296 bits (758), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 97/400 (24%), Positives = 194/400 (48%), Gaps = 31/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK++  +S++   L    R +  + T PV  +VLL A++  G L +      + I  +I 
Sbjct: 1   MKLSCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS+D  G+IT+ A L  +IV KL + + +    + E   +V ++     + ++     +F
Sbjct: 61  ASIDSSGAITLPAKLFGEIVSKLSNDSPLVLTSD-ETSQQVELTSKSGTYQVRGMLSDDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   SF+L   +L N ++ T FA +T++ +  L G+    +   ++  + ATDG
Sbjct: 120 PELPLVENGTSFKLNPLLLSNAIKSTLFASSTDDAKQLLTGVNLTFDGYGIE--SAATDG 177

Query: 179 HRLAVAEVDIVAQIAKM---------PSIIVPRKAVGEILRILSSKDSSVKV--SLSESR 227
           HRLAV  ++ +   +K           SI +P K++ E+ + LS+ D S  +   + + +
Sbjct: 178 HRLAVLNLNNILSDSKEIDSSIKFEKFSITLPSKSLREVEKFLSTCDISHPINFFIDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +        +++R ++G +PNY  ++P + + EL  +      +++R+++++      +K
Sbjct: 238 VVFISVEDIITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNVIK 297

Query: 288 LSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           ++   S++ + ++ D  D+G   ES+ V Y      I FN +YLL+ +  I S+      
Sbjct: 298 VTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGLKVIDSNL----- 352

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    +S  +       + D        VN  Y++MP++I
Sbjct: 353 IKLSCNSPTTPAIFSPINSD--------VNFTYLVMPIQI 384


>gi|291548767|emb|CBL25029.1| DNA polymerase III, beta subunit [Ruminococcus torques L2-14]
          Length = 369

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 184/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I  ++S++++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MRIICKKSNLVKGVSIVSKAVPSKTTMPILECILIDATTDVIKLTANDMELGIETTIDGI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G I ++A +  +IVRKL D   +    E E   +  I+   + F + +    +F  
Sbjct: 61  IDSRGIIALNAKIFSEIVRKLPDNDVVI---ETESDNQAIITCEKAKFNIAAQSGDDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK +V +T F++A  +    + G  F I+ + L++  V+ DGHR
Sbjct: 118 LPAIEREDFITISEFTLKEVVRQTIFSIADNDTNKMMTGELFEIDNDVLRV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++     +   +IVP K + EI +I+  + D+ V++S +++ I    +   +  
Sbjct: 176 ISIRKIELK-DAYQPRKVIVPGKTLQEISKIIGGEADAEVEISFTKNHIVFEFDRTLVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    +  + VN   L   +DR +++      + + + + ++ + + 
Sbjct: 235 RLIEGEYFRIDQMLSSDYETRVHVNKKELLDCIDRATLLIKEGDKKPIIIDIKNESMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E +    +   + I FN K+L++ +  I      D+EV     ++ +  F
Sbjct: 295 IKSQ-IGSMDELIFCTKDGKDLMIGFNPKFLIDALRVIE-----DEEVDLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD   +  Y+++P+
Sbjct: 349 I----------KDENQSYIYLILPV 363


>gi|147669676|ref|YP_001214494.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1]
 gi|146270624|gb|ABQ17616.1| DNA polymerase III, beta subunit [Dehalococcoides sp. BAV1]
          Length = 378

 Score =  295 bits (757), Expect = 5e-78,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T  + ++ + L    +    + T+P++ +VL+  +DG L++ A+  E+ I+  I A 
Sbjct: 1   MKLTCLQENLNKGLNIVGKAAAGRTTLPITNNVLISTDDGRLKLAATNLEMAISCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS T+ A LL + V  L +         N     +NI        +      +FP 
Sbjct: 61  IEEEGSTTIPAKLLTEFVSSLPNDKI--DLSLNAKSKALNIKCARFEARITGVDSKDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S +++    +  V    FA A +E R  L G+        L L   A DG R
Sbjct: 119 IPKVENGISTKVSIDAFRQAVSEVVFASAADESRPVLTGVNAEFEGSTLTL--AAADGFR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSM 237
           LAV ++ ++  +     +I+P + +GE+ R+ S  +     + V  ++S+I   ++++ +
Sbjct: 177 LAVYKLPLLETVKTTTKVIIPARTLGELSRLASMDEEEALVINVDTAKSQILFRLKNIEL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291
             +L+ G FP Y  +IP S    + ++      A    +I +      V+L        +
Sbjct: 237 VSQLVQGNFPQYNQIIPQSFTTRVVIDANQFLMATKTATIFARDGGGIVRLMMNPGGDTT 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             KL ++  + ++G     ++         I FN KYLL+++  + +      +V   + 
Sbjct: 297 PGKLTISARSEEVGDNTGELDAVIQGEEAKIAFNGKYLLDVLGVLKAQ-----QVALEVT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S +S   I+    D         N  +V+MPM
Sbjct: 352 SPSSPGVIKPVGAD---------NYIHVIMPM 374


>gi|188587627|ref|YP_001919467.1| DNA polymerase III subunit beta [Clostridium botulinum E3 str.
           Alaska E43]
 gi|251779638|ref|ZP_04822558.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str.
           'BoNT E Beluga']
 gi|188497908|gb|ACD51044.1| DNA polymerase III, beta subunit [Clostridium botulinum E3 str.
           Alaska E43]
 gi|243083953|gb|EES49843.1| DNA polymerase III, beta subunit [Clostridium botulinum E1 str.
           'BoNT E Beluga']
          Length = 366

 Score =  295 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 187/385 (48%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M    E+  +L+ +    + I  K+T+ V   + + A +  L +  S  ++ I   + A 
Sbjct: 1   MIFICEKHKLLDGISIVQKAITGKSTMKVLDGIYINATNDGLRLIGSDMDLSIQTLVKAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A +  +I+RKL +        + ++   + I+   S F +      EFPS
Sbjct: 61  VLDKGEIVIDAKIFGEIIRKLPNSDIKIETVKEDV---IQITCEKSVFNVVCMNAEEFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     E+  S+LKN+++ T F++A +E R  L GI F + +  L L  VA DG+R
Sbjct: 118 LPNINEDLKVEVNESILKNMIKGTSFSIAQDEARPILQGILFQVKDRTLNL--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I     +++P K + E+ +IL   D +V ++ + + I  N+E+  +  R
Sbjct: 176 LAIRSEFLDNDI--NLEVVIPGKTLVEVSKILEDHDKNVDITFTNNHILFNLENTKIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L+DG+F NY +++P  +   + V     +  ++R S+M+       + L L  + L +T 
Sbjct: 234 LLDGKFVNYTSLLPQEHKLLVTVKKEEFQNGIERASLMAKDGNNNLINLDLKEETLIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N  +GK  E + +      ++I FN +YLL+++ N+ S     DEV+  + S  S   I
Sbjct: 294 -NSQLGKVREEVLINLQGEEIEIAFNSRYLLDVLKNMES-----DEVILEMTSGVSPCVI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           + KD +         N+ Y+++P+R
Sbjct: 348 KEKDGE---------NSQYLVLPVR 363


>gi|58336356|ref|YP_192941.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM]
 gi|227902593|ref|ZP_04020398.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC
           4796]
 gi|58253673|gb|AAV41910.1| DNA polymerase III, beta chain [Lactobacillus acidophilus NCFM]
 gi|227869682|gb|EEJ77103.1| DNA polymerase III, beta chain [Lactobacillus acidophilus ATCC
           4796]
          Length = 376

 Score =  295 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 173/392 (44%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L+  +  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRTTIPILSGIKLELTNEELILTGSDTDISIEIKIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +I++KL       F  E +   +  I   +S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIIKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    + ++  T FA + ++ R  L G+ F    + +K  AVAT
Sbjct: 118 NYPRLPEISDSASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFKPDSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VKV   +S+    I +L+
Sbjct: 176 DSHRLSQRIIALENGPQSETDLIIPGKSLQELARIIGETDPEVKVCPGDSQALFVIGNLA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDK- 294
              RL+DG +P+   +IP      +  +   L  A++R S+++ + R   V L+L ++K 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSIEFDIPELSSALERASLLTHAGRNNVVTLTLDTEKQ 295

Query: 295 -LCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        ++I FN  Y+ + +        V D V+     
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I    KD +           ++ P+R
Sbjct: 351 PLRPFIINPDKKDIE--------FVQLITPVR 374


>gi|206891136|ref|YP_002247870.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
 gi|206743074|gb|ACI22131.1| DNA polymerase III, beta subunit [Thermodesulfovibrio yellowstonii
           DSM 11347]
          Length = 368

 Score =  295 bits (757), Expect = 6e-78,   Method: Composition-based stats.
 Identities = 106/387 (27%), Positives = 190/387 (49%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + +++  I E L     I+E+K+ +PV  H L+   +  + I A+  E  +   + A 
Sbjct: 1   MHLKLKKQKIQESLSKIQNIVEKKSIMPVLNHFLMDVTENAVFILATDLETAVKQPLEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   + A   Y+IV++L +  +I   ++      + I  G SNF L S   SEFP 
Sbjct: 61  VLEIGKACIPARKFYEIVKELDEDIEIMLLEQ-----WIKIQSGRSNFRLASLDPSEFPV 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        L+   L   +E+T +A    + RY LNG+ F I  E  +   V TDGHR
Sbjct: 116 WPQIGDATQINLSRDFLLTAIEKTIYASGEADARYVLNGLLFQIK-EPAEFNVVGTDGHR 174

Query: 181 LAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA  +  +   + I     +I+ +K++ E+ + LS  + +V + + ++ +   I+ ++  
Sbjct: 175 LAHFKATVEDISSIEGEKKVILSKKSLNELRKFLSDTE-TVSIHIGKTHVMCEIDGINFL 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I+G +P+Y+ VIP  NDK   V+  +L  ++ RVS++S  R  AVK     D L ++
Sbjct: 234 TRMIEGNYPDYETVIPRHNDKIAIVDKNSLIASLKRVSVLSRERQNAVKTEWDKDLLIIS 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +P++G+A + + V Y   P  I FN +YL+E +     + +  D+    +   + +V+
Sbjct: 294 SSDPEIGEARDELTVDYQGEPFIIGFNARYLIEAL-----ERITSDKAKITMSEPDKAVY 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +  S            V+MP+R+
Sbjct: 349 ITDGEAASFV-------YECVVMPLRL 368


>gi|83814447|ref|YP_444160.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855]
 gi|83755841|gb|ABC43954.1| DNA polymerase III, beta subunit [Salinibacter ruber DSM 13855]
          Length = 377

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 106/391 (27%), Positives = 191/391 (48%), Gaps = 24/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T   +D+LE L      +  K+T+P+   +L + +   L + A+  EI I   +P  
Sbjct: 1   MKFTASSADLLEALNTVKGAVPSKSTMPILECILFERDGDTLRLSATDLEISIIQTVPVQ 60

Query: 61  VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +  G+     I V A  L D +R L D   I F  +++    ++   G  ++ +     
Sbjct: 61  FEKNGTPESTPIAVPAQRLIDTLRALPD-LPIEFAADSDFEIRMDTDQG--HYKMVGHDG 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S++P   E E  +   +   +L   +++T FA++ + +R  + G++F ++EE+     VA
Sbjct: 118 SDYPELPELEEQHEINVEGGLLGRSIDKTAFAVSQDALRPAMMGVYFQVSEEE--TSVVA 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDGHRL    +    +       IVP KA     RI+   D    V + +S +       
Sbjct: 176 TDGHRLVKLTLP-ELRADTSADFIVPEKATKLAGRIVED-DEICTVRVDDSHVSFEFGES 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RLID  +PNYQ+VIP  ND+ L VN  ++  AV RV + SS     ++L +++D +
Sbjct: 234 RVLARLIDETYPNYQSVIPDGNDRNLVVNREDMLNAVKRVGLYSSSMTNQIRLDITADTV 293

Query: 296 CMTVDNPD-MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            ++ ++ +   +A E+++  Y+  PM+I FN +YL E++ N+       DEVVF L S N
Sbjct: 294 TISAEDVERSSEAEETIHCDYDNEPMEIGFNSEYLTEVLSNVEC-----DEVVFELSSPN 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +  ++        +  +   ++MP+ +
Sbjct: 349 RAGIVLPREG------ADDEDILMLIMPVML 373


>gi|124024713|ref|YP_001013829.1| DNA polymerase III subunit beta [Prochlorococcus marinus str.
           NATL1A]
 gi|123959781|gb|ABM74564.1| DNA polymerase III, beta chain [Prochlorococcus marinus str.
           NATL1A]
          Length = 386

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 96/400 (24%), Positives = 192/400 (48%), Gaps = 31/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK+   +S++   L    R +  + T PV  +VLL A++  G L +      + I  +I 
Sbjct: 1   MKLNCSQSELNNALQLVSRAVSNRPTHPVLANVLLAADEVTGKLRLTGFDLSLGIQTSIS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS++  G+IT+ A L  +IV KL + + +    + E   +V ++     + ++     +F
Sbjct: 61  ASIESSGAITLPAKLFGEIVSKLSNDSPLVLTSD-ETSQQVELTSKSGTYQVRGMVSDDF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   SF+L   +L N ++ T FA +T+E +  L G+    +   ++  + ATDG
Sbjct: 120 PDLPLVESGNSFKLNPLLLSNAIKSTLFASSTDEAKQLLTGVNLTFDGYGIE--SAATDG 177

Query: 179 HRLAVAEVDIVAQIAKM---------PSIIVPRKAVGEILRILSSKD--SSVKVSLSESR 227
           HRLAV  ++ +   +K           SI +P K++ E+ + LS+ D    +   + + +
Sbjct: 178 HRLAVLNLNNILSDSKEIDSSTKFEKFSITLPSKSLREVEKFLSTCDISQPINFFVDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +        +++R ++G +PNY  ++P + + EL  +      +++R+++++      +K
Sbjct: 238 VVFISVEDIITIRALEGSYPNYSQLLPDTFENELEFDRKEFISSLERIAVLADQHNNVIK 297

Query: 288 LSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           ++   S++ + ++ D  D+G   ES+ V Y      I FN +YLL+ +  I S+      
Sbjct: 298 VTTDGSANLIKISTDAQDIGTGYESLPVSYKGDSFQIAFNVRYLLDGLKVIDSNL----- 352

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    +S  +       + D        VN  Y++MP++I
Sbjct: 353 IKLSCNSPTTPAVFSPINSD--------VNFTYLVMPIQI 384


>gi|307265437|ref|ZP_07546993.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
 gi|306919551|gb|EFN49769.1| DNA polymerase III, beta subunit [Thermoanaerobacter wiegelii
           Rt8.B1]
          Length = 370

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 192/389 (49%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A  G ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKGQVKFSGTDLDIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V A +  ++VRKL +G       E++    VN+     NF +      EFP 
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEGEV---KVESDSQNTVNVVCDSINFTIAGSDAVEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     SF+L  ++LK+L+ +T F +A E+ R  L G+ F + + ++K  AVA DG R
Sbjct: 118 IPQVSRENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGFR 175

Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           +  +  SI++P K + EI RIL  K++ +++  + +++   IE+  
Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILEDKETEIEIYHTANQVLFQIENTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +    + 
Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N + GK +E + V      ++I FN +YLL+ +  I      ++E+     +S + 
Sbjct: 296 VSS-NSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+              +  Y+++P+++
Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369


>gi|198282150|ref|YP_002218471.1| DNA polymerase III subunit beta [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218667577|ref|YP_002424516.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
 gi|198246671|gb|ACH82264.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans
           ATCC 53993]
 gi|218519790|gb|ACK80376.1| DNA polymerase III, beta subunit [Acidithiobacillus ferrooxidans
           ATCC 23270]
          Length = 365

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 185/386 (47%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT++R D+L +L +   I +R+   P+  HVL++A        A+  E++++  +   
Sbjct: 1   MKITIDREDLLPILANMANIADRRPVQPILAHVLIEAAGQHCRFVATDLEVQLSADLDHP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+  V A  LYDI R L +   I F K+   G ++ +    S F L   P  +FP 
Sbjct: 61  VDAPGTCAVPARKLYDICRALPEHTPIEFHKD---GEKLLLKAAKSRFTLHILPADQFPY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +      +   +  +      MA  + R +LNG+   +  ++L+L  VATDGHR
Sbjct: 118 LSTHSSLCQGNGNAKTFREALAVVANTMAQNDARLFLNGVLIEVEGQELRL--VATDGHR 175

Query: 181 LAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+  +   + +       I+PRKAV E+LRIL   D  + + +S++   LN  +   + 
Sbjct: 176 LAMMTLPFASSLESGSYQAILPRKAVLELLRILD--DGDIVLEMSDASFLLNDGTQQFAC 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LID ++P+Y+ VIP  + +   ++    + A+ +  ++ S R     L L +D++ +  
Sbjct: 234 KLIDAKYPDYRRVIPQGHPRFAILDRQAFKSALQQSDVLVSDRNPTTHLHLENDQMTLRS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N +  +    + V Y    +DI FN +YL +     ++     + +  R+  S+SS   
Sbjct: 294 RNEEQEEGEIQIPVEYQGDTLDIAFNSRYLTD-----TTQIFPQESLRMRVKDSDSSAVF 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D +         N  Y++MP+R+
Sbjct: 349 TPVDSN---------NPLYIIMPVRL 365


>gi|227432905|ref|ZP_03914849.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
 gi|227351338|gb|EEJ41620.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           cremoris ATCC 19254]
          Length = 378

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 91/395 (23%), Positives = 179/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ RS  ++ L    R I  + TIP+  ++ L  ND  L +  S  EI I   +P S
Sbjct: 1   MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNAEISIETTVPQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV++L + A     +    G    I+ G S+F +   
Sbjct: 61  DTSAQLIITTPGGITLPATFFINIVKRLPNDAMTLNVE----GLRATITSGASSFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +     ++ A
Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGN--RVKA 174

Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           V TD HRL+   V +    A     ++I+P K+  E+  +L  +D  V++  S ++   +
Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
           +   +   RL++G +P    +IP  +  ++ +  ++L  A+DR S++S   R   V+LSL
Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + +  +T  + ++G+  E +N        ++I FN  Y+ + +   +   V       +
Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYVRDALRIFNGKRVD-----VK 348

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S+     +  + +              ++ P+R
Sbjct: 349 FTSNLRPFTLTPEGETDNRQ-------LQLITPVR 376


>gi|326799125|ref|YP_004316944.1| DNA polymerase III subunit beta [Sphingobacterium sp. 21]
 gi|326549889|gb|ADZ78274.1| DNA polymerase III, beta subunit [Sphingobacterium sp. 21]
          Length = 374

 Score =  295 bits (756), Expect = 7e-78,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 176/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  D  L I A+  +  +  ++   
Sbjct: 1   MRFIVSTSTLLKQLQAVNGASSSSTVLPILENFLFEIKDNSLTISATDLQTSMITSLQVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V A +L + ++ L D      F  +     + IS GD  + L      +FP 
Sbjct: 61  SKEEGKVAVPAKILIETLKTLPDQPI--AFSVDTQTFAIEISAGDGKYKLSGENADDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  + +SVL   + +T FA++ +E+R  + G+   +  ++     V+TD H+
Sbjct: 119 IPVVENPSTVRIPASVLSEAISKTIFAVSNDELRPAMTGVLCQLTPQNTTF--VSTDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V       +  ++ S+I+P+KA+  +   L S+D  V V  + +       ++ +  R
Sbjct: 177 L-VRYRRADVKSEQVTSMILPKKALTLLKSSLPSEDVDVAVEYNNTSAFFKFGNIHLICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP  N  +L ++   L  ++ RV I ++     V+L ++  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPQVNPNKLTIDRLLLLNSLRRVVIFANKTTHQVRLRITGSELNISSE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E ++  Y     +I FN K+L+E++ N+       +EVV  + + N +  +
Sbjct: 296 DLDFANEAHERLSCQYEGEDTEIGFNAKFLIEMLSNLEC-----EEVVLEMSTPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++         N   ++MP+ +
Sbjct: 351 LPAVEE------ENENILMLVMPVML 370


>gi|158311870|ref|YP_001504378.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
 gi|158107275|gb|ABW09472.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
          Length = 386

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 89/395 (22%), Positives = 172/395 (43%), Gaps = 21/395 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           M+  VER +  + +    R +  + T  + V   +LL A    L++ A   E+   G + 
Sbjct: 1   MRFRVERDEFTDAVAWTARTLPSRATTQLQVLAGLLLDATGPALKVAAFDYEVAAQGELD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G   V+  +L DI R L              GT + ++ G++ F L   P  ++
Sbjct: 61  ATVTEEGRGLVNGKMLADITRSLPAAPVDVHVD----GTRLVVACGNARFALPMLPVDDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      + +  +  +   + V +   A   ++    L G+   I+ + L L   ATD 
Sbjct: 117 PTLPPMPEI-TGHIEGAAFGSAVAQVAVAAGRDDTLPVLTGVRLEIDGDTLTL--AATDR 173

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNI 232
           +RLAV  +           + +VP + + +  + LS     V V+L      E+      
Sbjct: 174 YRLAVRTLKWRPATPDASGVALVPARTLLDTAKSLSGSGVEVAVALGTGPSGETLAGFAG 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +   + RL++G FP Y+ ++P S+    ++    L +AV RV+++++ R   V+L+ + 
Sbjct: 234 NTRQTTTRLLEGTFPPYRKLLPDSSPLIAQLEIAPLTEAVKRVALVAA-RTAPVQLTFTP 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD--EVVDDEVVFRL 350
           D L +        +A E++ V Y+   + + FN  YLL+ +  + SD   +         
Sbjct: 293 DHLVLEAGTGGEAQASETLPVTYDGPELTVAFNPAYLLDALGALESDIVRIGFASAEDAA 352

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +++    + GK  D +       +  Y+LMP+R+
Sbjct: 353 LAASKPAILTGKGGDDQT---EIPDYRYLLMPIRL 384


>gi|255020210|ref|ZP_05292279.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254970352|gb|EET27845.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 365

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 114/387 (29%), Positives = 200/387 (51%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  +L LL     + +R+   P+  H+L+ A    L   A+  EI++   IPA 
Sbjct: 1   MKIRVERDTLLPLLASMVSVADRRPIQPILSHLLVTAESDSLRCVATDLEIQLLAHIPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS  + A  LYDI R L + + +   ++ E    + +  G + F+LQS P  +FP 
Sbjct: 61  VEQAGSCAIPARKLYDICRSLPESSTLDILRDKE---RIALRCGSARFHLQSLPAEQFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  ++ ++S + + + L++ +     AMA  + R++LNG+   + E +L+   VATDGHR
Sbjct: 118 SSNDDTLFSGQCSGTTLRDALSIAATAMAQNDARFFLNGVLLEVAEHELR--CVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSI--IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           LA   +   A  A++PS   I+PRKAV E+ R+L   +  +++ L  + I L  + +   
Sbjct: 176 LARMTLPF-AHAAELPSYQGILPRKAVLELGRLLD--EQDIELRLGHNAIVLVNDRMQFR 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LID  +P+Y+ VIP  + +  +V+   L+QA+ +++++SS +  A  L   +  L + 
Sbjct: 233 CKLIDARYPDYRRVIPLGHPERAQVDRLALKQALTQINVLSSDKNPACVLKFQTTSLSLR 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N +  +A   + V Y    ++I FN  YL +     S+    + E+  +L  + SSV 
Sbjct: 293 SRNEEQEEAEVEIPVQYGGAGLEIAFNSHYLAD-----STQIFTESEIAMQLKDNGSSVL 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 D         N  Y++MP+R+
Sbjct: 348 FTPLKGD---------NPLYIVMPIRL 365


>gi|88658616|ref|YP_507795.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str.
           Arkansas]
 gi|88600073|gb|ABD45542.1| DNA polymerase III, beta subunit [Ehrlichia chaffeensis str.
           Arkansas]
          Length = 369

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 210/387 (54%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   V +  +L+ L +   I+E++++I V   V ++A D  +++ ++  +I I  +I A 
Sbjct: 1   MNFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+V G + VSA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP 
Sbjct: 61  VNVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  E    F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHR
Sbjct: 119 IENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMS 238
           L++ ++     +     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   + 
Sbjct: 177 LSLTKLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILI 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++IDG FP+Y ++IP S+DK + +    L  A+DRVS++   +++ +KL   S+KL ++
Sbjct: 237 SKVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + D G A E + V Y+   M I  N +YL+E +  I        + +     + +SV 
Sbjct: 297 AASSDQGDAREELEVDYSGEDMTIGLNARYLMEALYCIKG------KCLLSFYDAGTSVL 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+ ++        N  +  Y++MPMRI
Sbjct: 351 IQEEE--------NIDDFTYIIMPMRI 369


>gi|93004835|ref|YP_579272.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5]
 gi|92392513|gb|ABE73788.1| DNA polymerase III, beta subunit [Psychrobacter cryohalolentis K5]
          Length = 391

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 110/410 (26%), Positives = 202/410 (49%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++++ R  +L+ +    +  ++++ + +  ++ LQ  +  L + AS  E+E+T  +   
Sbjct: 1   MQLSINRESLLKAINLIAKAADKRHNMVILGNIKLQLFESELVLTASDLEVELTSTLKLP 60

Query: 60  --SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G+ T+ A  L DI + L   AQ+S     +      ++ G S F L + P  +
Sbjct: 61  AGACVEAGTTTLPATKLRDICKSLPAQAQVSLIT--QENQRCLLTSGKSRFTLGTLPSED 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +PS    E +    ++ S L +L+ +T FAMA +++RYYL G+ F ++++  +L  VATD
Sbjct: 119 YPSLGNPENITPLTISRSRLIDLIHKTQFAMAIQDVRYYLTGMLFDVSQQ--QLTTVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL-------RILSSKDSSVKVSLSES--RI 228
           GHRLA+A   I          I+PRKAV E+        ++L  KD++V +S      ++
Sbjct: 177 GHRLALARSVIEVSADLSMQAILPRKAVIELERLATELGKMLGDKDNAVTLSFGREFLQV 236

Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            L                ++ + RLIDG+FP+Y+ V+P + DK    N   +   + RV+
Sbjct: 237 SLPFGDVDSAGQVSQDLMVTFTARLIDGKFPDYRRVMPSNTDKLALFNQEKMMDVLRRVA 296

Query: 277 IMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           I+S+ + + V  +  S   + +  +N +  +A+E +   Y   PM++ FN  YL +++  
Sbjct: 297 ILSNEKSRGVVFNFASDGMVEVRANNAEQDEAVEMIQAKYQGEPMELSFNAAYLQDVLGV 356

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  D      +   +  SN+SV +   + +            YV+MPMRI
Sbjct: 357 IQGD------LQMHMSQSNASVLVNQLNDEFHQ---------YVIMPMRI 391


>gi|110637953|ref|YP_678160.1| DNA polymerase III subunit beta [Cytophaga hutchinsonii ATCC 33406]
 gi|110280634|gb|ABG58820.1| DNA polymerase III, beta subunit [Cytophaga hutchinsonii ATCC
           33406]
          Length = 374

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 187/387 (48%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I     +P+  + L +  DG+L + AS  +  +   I   
Sbjct: 1   MKFVVSSNALLKQLTAINGVITTNPVVPILENFLFEIGDGMLVVYASDLQTSMITEIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSI V A +L D ++ L +              E  IS  +  + L     ++FP 
Sbjct: 61  AKAKGSIAVPAKILLDTLKNLPEQPVTFTIDPETYSIE--ISSDNGRYKLSGENATDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +  YS ++++ +L   +  T FA + +E++  + G++  + E +     VATDGHR
Sbjct: 119 VPGVKNGYSVDISTEILNRAISSTIFAASNDELKPAMTGVYVSLTESNATF--VATDGHR 176

Query: 181 LA-VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L      DIV+++A   ++I+P+KA+  +   L S++++VK+  + S    +  ++ M  
Sbjct: 177 LIRYRRTDIVSEMAN--TLIIPKKALNLLKASLPSENTNVKIEYNASNAFFSFNNIKMIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  FP+Y+N IP  N   L +  T++  ++ R+SI ++     V+L L+  +L ++ 
Sbjct: 235 RLIDERFPDYENAIPVDNPNVLTITRTDMMNSLKRISIYANKTTHQVRLKLAGSELQISA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++ D   +A E +   +    M+I FN K+L+E++ N+ S      ++     + N +  
Sbjct: 295 EDLDFSNEANERLACEFEGQDMEIGFNAKFLVEMLSNLDS-----PQISMHFSAPNRAGI 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D      KD   +   ++MP+ +
Sbjct: 350 ITPAD------KDEHEDVLMLVMPVML 370


>gi|325265441|ref|ZP_08132164.1| DNA polymerase III, beta subunit [Clostridium sp. D5]
 gi|324029299|gb|EGB90591.1| DNA polymerase III, beta subunit [Clostridium sp. D5]
          Length = 384

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 181/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++++ +    + +  K T+P+   +L+ A+  ++++ A+  E+ I   I   
Sbjct: 16  MKIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVVKLTANDMELGIETRIEGD 75

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I ++A +  +IVRKL D        E +   +  I+   + F + +    +F  
Sbjct: 76  IVERGIIALNARIFSEIVRKLPDSDV---TIETDSDNQTLITCEKAKFNIAAQSGEDFSY 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F I  ED  L  V+ DGHR
Sbjct: 133 LPVIEKEDYITVSEFTLKEVIRQTIFSIADNDTNKMMTGELFEI--EDSILKVVSLDGHR 190

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++    A    +IVP K + EI +I+  + ++ V +S +++ I    +   +  
Sbjct: 191 ISIRKIELKEDYA-PKKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTVVVS 249

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G++     ++    + ++R+N   L   +DR +++      + + + +  + + + 
Sbjct: 250 RLIEGDYFKIDQMLSSDYETKVRINKKELLDCIDRATLLIKEGDKKPIIIDIRDESMELK 309

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +      + I FN K++++ +  I      D+EV     ++ +  F
Sbjct: 310 IKSQ-IGSMDEEIFITKEGKDLMIGFNPKFMIDALRVID-----DEEVDLYYMNAKAPCF 363

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD K +  Y+++P+
Sbjct: 364 I----------KDEKQSYIYLILPV 378


>gi|148651820|ref|YP_001278913.1| DNA polymerase III subunit beta [Psychrobacter sp. PRwf-1]
 gi|148570904|gb|ABQ92963.1| DNA polymerase III, beta subunit [Psychrobacter sp. PRwf-1]
          Length = 391

 Score =  295 bits (756), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 112/410 (27%), Positives = 203/410 (49%), Gaps = 44/410 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ R  +L+ +    +  ++++ + V  ++ L+  + LL + AS  E+E++  +   
Sbjct: 1   MQLSINRELLLKAINLIAKAADKRHNMVVLGNIKLEVTEQLLILTASDLEVELSAQVKLG 60

Query: 61  VDVCGSI---TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               GSI   T+ A  L++I + L     I+   E        I+ G S F L + P ++
Sbjct: 61  NGATGSIGATTLPASKLHEICKLLPKDTMINLAAE--SNERCVINSGKSRFVLGTLPAAD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP       +    L+ +VL +L+ +T FAMA +++RYYL G+ F +++   +L  VATD
Sbjct: 119 FPILGNPANITPLTLSRNVLMDLMAKTQFAMAIQDVRYYLTGMLFEVSQR--QLTTVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAV-------GEILRILSSKDSSVKVSLSES--RI 228
           GHRLA+A   I          I+PRKAV        E+ +++   D ++ +S      ++
Sbjct: 177 GHRLALARSVIEVADDFSMQAILPRKAVIELERLANELGKLVGGNDGNLTLSFGREFLQV 236

Query: 229 HLNIES------------LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
            L   +            ++ + RLIDG+FP+Y+ V+P + DK    N   +   + RVS
Sbjct: 237 SLPFGNVDSTGQIDDSVRVTFTARLIDGKFPDYRRVMPNNTDKIALANKEQMTDVLRRVS 296

Query: 277 IMSSVRIQAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
           I+S+ + + V    S    + +  +N +  +A+E++ V Y   P+++ FN  YL +++D 
Sbjct: 297 ILSNEKSRGVIFKFSQDGNVEVRANNAEQDEAVEALQVKYQGAPIELSFNAAYLQDVLDV 356

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D      V   +  +NSSV +         N+ N     YV+MPMRI
Sbjct: 357 LGGD------VQLHMSQANSSVLV---------NQLNDSQHQYVIMPMRI 391


>gi|229829519|ref|ZP_04455588.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM
           14600]
 gi|229791950|gb|EEP28064.1| hypothetical protein GCWU000342_01611 [Shuttleworthia satelles DSM
           14600]
          Length = 368

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 183/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  ++++++ +    + +  + T+P+   +L+ A+   +++ A+  EI I   I   
Sbjct: 1   MKITCSQAELVKGVNIVTKAVPTRTTMPILQCILIDASANQIKLMANDMEIGIETIIDGR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I + A +  +IV+KL D   +    E     + NIS   +NF +       F  
Sbjct: 61  IEERGIIALDASIFSNIVKKLPDSQVVITTGE---SFQANISCEKANFNINGMDGENFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      ++   LK ++ +T F++A  E    + G  F I+    ++  V+ DGHR
Sbjct: 118 LPVIPRNEPVVISEFTLKEVIRQTIFSIADNENNKLMAGELFEIHGS--RMRVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++ ++      ++VP K + EI +I+    + +V + ++E+ I       ++  
Sbjct: 176 ISIRNIELKSECPD-YKVVVPGKTLNEISKIIPGSYEENVMIYITENHIIFEFGQTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLIDGE+   + ++    + ++R++   L + +DR +++ +    + + ++++   + + 
Sbjct: 235 RLIDGEYFKIEQMLSSDYETKIRISKRELLECIDRATLLVNPGDKKPIIMNVTDGNMELN 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E++ +      + I FN K+ ++ + NI      D+E+   + +  +  F
Sbjct: 295 IQSF-IGSMNENIAIDKEGRDILIGFNPKFFIDALRNID-----DEEITIYMVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+     Y+++P+
Sbjct: 349 I----------KDDDNKFLYLILPV 363


>gi|81251050|gb|ABB69859.1| DNA polymerase III beta chain [Nitrosospira sp. HBN8222A]
          Length = 369

 Score =  295 bits (755), Expect = 8e-78,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSATD 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               D   S+TV+A  L DI+R L +  Q++    +   + +    G S F LQ+ P  +
Sbjct: 61  GGKADEEYSVTVAAKKLQDILRALPEKVQVTLETSD---SRLQAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   + ++    LK+L+    +AMA ++IRYYL      +  E+ +L  VAT
Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELARLLNETEEPVTIEVLQNQVRFTFSNVI 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + Y+   +DI FN  YLL++++N        + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDC-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|213052697|ref|ZP_03345575.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 274

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 97/280 (34%), Positives = 158/280 (56%), Gaps = 7/280 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + 
Sbjct: 176 RLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I+S
Sbjct: 235 KLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 274


>gi|83588877|ref|YP_428886.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC
           39073]
 gi|83571791|gb|ABC18343.1| DNA polymerase III, beta subunit [Moorella thermoacetica ATCC
           39073]
          Length = 374

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 185/390 (47%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   +  ++  +    R +    T      +LLQA++  L ++ +  ++ I    P  
Sbjct: 1   MHILCPQPQLVNAVQKVYRAVATTTTYHAITGILLQAHENTLTLQGTDLDLGIIYTFPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + + A +  ++VR+L   +      ++     V I++  S   L S   S+FP 
Sbjct: 61  VIEEGELLLPARIFTEMVRRLPPTSLSLQSLQD---NTVEIAYQQSKVQLNSIDASQFPL 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E  +SF +A + LK+ + +   A   +++R   NG+ + +   + +   VATD HR
Sbjct: 118 LPPVEGNFSFTVAITALKDAIRKVTIAAGNDDLRSIFNGVLWELEPGENRFNLVATDTHR 177

Query: 181 LAVAE-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV       +   +  + +VP +A+ E+ R+L  +D  VK+++ ES+I+   E L++  
Sbjct: 178 LAVYHGQPEDSTSNETATALVPCRAMNELARLLPGEDGLVKITIGESQIYAQHEGLTLYT 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA----VKLSLSSDKL 295
           RL++G+FP+YQ VIP  +   + +   +L   V+R ++++    +A    + L +    L
Sbjct: 238 RLLNGKFPHYQQVIPTDHITTIEIATRDLLDTVERATLLARDENKARAHIIILQVGEKSL 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T +  ++G   E +       P+++  N +YLLE +  I +     + V+  L +   
Sbjct: 298 KITSEAAEIGHLEEELTAEIAGQPLELALNGRYLLETLRVIDT-----ENVILELLAPLK 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V +R   ++         N F +++P+RI
Sbjct: 353 PVVVRPAGQE---------NYFCLILPVRI 373


>gi|89891238|ref|ZP_01202745.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria
           bacterium BBFL7]
 gi|89516550|gb|EAS19210.1| DNA-directed DNA polymerase III beta chain dnaN [Flavobacteria
           bacterium BBFL7]
          Length = 371

 Score =  295 bits (755), Expect = 9e-78,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 174/386 (45%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S + + L     +I   NT+P+  + LL+ N   L++ AS  E  +  A+   
Sbjct: 1   MKFIVSSSYLQKHLQMLGGVINSNNTLPILDNFLLELNGKELKVSASDMETTMLTALEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  GSI + A LL D ++   +               + +SH   +  +      EFP 
Sbjct: 61  SEDDGSIAIPAKLLLDTLKTFPEQPLTFSAD----NGIMTVSHDKGSSEIACANGEEFPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S  +    L   + +T FA   +++R  ++G+FF  + + L    VATD H+
Sbjct: 117 AVSLTDPSSTSILGDTLATAINKTIFAAGNDDLRPVMSGVFFQFSTDSLTF--VATDAHK 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     +     ++    I+P+K +  +  +L   ++ V +  +ES      +S S+  R
Sbjct: 175 LVRYRRE-DLAASETAEFIMPKKPLNLLKSMLQGSETEVLIEYNESNAQFTFDSTSIICR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +L +       +V RVSI S+     ++L ++  +L ++ +
Sbjct: 234 LIDGKYPNYEAVIPKENPNKLVIARNQFLNSVRRVSIFSNKTTHQIRLKMAGAELNISAE 293

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M I FN ++L+E+++N++      D+V   +   N +  +
Sbjct: 294 DIDYSNKADERLTCDYQGDDMQIGFNSRFLIEMLNNLNC-----DDVSLEMSMPNRAGIL 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D   +   ++MP+ +
Sbjct: 349 TPVD-----GLDEGEHVTMLVMPVML 369


>gi|46447339|ref|YP_008704.1| DNA polymerase III subunit beta [Candidatus Protochlamydia
           amoebophila UWE25]
 gi|46400980|emb|CAF24429.1| putative DNA polymerase III, beta chain [Candidatus Protochlamydia
           amoebophila UWE25]
          Length = 403

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 186/385 (48%), Gaps = 14/385 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   ++  L+     ++ +K TIP+  + L++A +  L + A+   + I     A 
Sbjct: 30  MKFVISTQELNYLISKILNVVAQKPTIPILSNFLIEAYNDELILTATDLTVGIHCHTEAK 89

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS T+ A  L  +VR+L     ++            I  G S F L    ++++PS
Sbjct: 90  ILEEGSTTLPAKRLSQLVREL---TAVNVEISTNTNEITTIIAGSSRFKLNGMSKTDYPS 146

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    ++FE+  S LK+L+ RT FA++ E+ RY L G+F  I    +    + TDG R
Sbjct: 147 LPDLSQSHTFEMKQSELKDLLYRTSFAVSKEDNRYVLTGVFIQIANGSITF--IGTDGKR 204

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA A+  I    +     I+P KAV EIL+ L+  +  VK+SL   ++ +    + +  +
Sbjct: 205 LARAKGVIDNDPSFSGQAIIPIKAVDEILKNLTD-EGEVKISLMADKVAIEANQMRILTK 263

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ G++P+   VIP  ++  + ++   L   + ++S+ ++    +V+ +    +L +T +
Sbjct: 264 LLSGDYPDVNRVIPEKSEIIVTLHREELSSLLRQISLFTADHNHSVRFTFIPGELKLTAN 323

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G+   SM V Y+   ++I FN  + ++I+ +        + V+  L  + +   I 
Sbjct: 324 TMDIGEGNVSMPVNYDGPKLEIAFNPGFFIDILRHCKG-----ETVIMGLTDAYNPGIIT 378

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++       +  +V+MPMR+
Sbjct: 379 ---DSAELANSLDASPLFVIMPMRL 400


>gi|332685536|ref|YP_004455310.1| DNA polymerase III subunit beta [Melissococcus plutonius ATCC
           35311]
 gi|332369545|dbj|BAK20501.1| DNA polymerase III beta subunit [Melissococcus plutonius ATCC
           35311]
          Length = 376

 Score =  295 bits (755), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/393 (25%), Positives = 187/393 (47%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++R+ +L+ L    R I  K TIP+   V +   D  L +  S  +I I   +   
Sbjct: 1   MKLTIKRTSLLQELQTVQRAISSKTTIPILTGVKIVLADEGLYLTGSNADISIESFLTKE 60

Query: 61  VDV-------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            +         GSI + A  L +I+RKL +        EN    +++I  G ++F +   
Sbjct: 61  DEKAKMTIFKTGSIVLQARFLGEILRKLPEDIVTMEVLEN---NQISIVSGKADFIVNGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     E+   +L  ++  T FA++  E R  L G+ F ++E+  KL A
Sbjct: 118 DAENYPHLPVIDTKNQMEIPVHLLTKIINETGFAVSMHESRPILTGVHFILSEQ--KLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   + I  Q+ +   I++P K++ E+ R   +++  V++S+ E+++    +
Sbjct: 176 VATDSHRLSQRIIPIE-QMVENFDIVIPGKSLQELSRSFVNEEEQVEISIMENQVLFKTK 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
           ++    RL++G +P+   +IP + + E+      L  A++R S++S   R   V+LS+S 
Sbjct: 235 NMYFYSRLLEGNYPDTNRLIPATFNTEVEFYGPKLLSAIERASLLSHEGRNNIVRLSISP 294

Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D + +  ++P++GK  ES+N        +DI FN  Y+ + +         +  +  +  
Sbjct: 295 DSVILYGNSPEIGKVEESLNYEHITGDTLDISFNPDYMKDALRAFG-----EMNITIKFI 349

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S      +   + D        VN   ++ P+R
Sbjct: 350 SPIRPFTLEPTEAD--------VNFVQLITPVR 374


>gi|313675527|ref|YP_004053523.1| DNA polymerase iii, beta subunit [Marivirga tractuosa DSM 4126]
 gi|312942225|gb|ADR21415.1| DNA polymerase III, beta subunit [Marivirga tractuosa DSM 4126]
          Length = 374

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 182/386 (47%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ +     +I     +P+  + L +  DGLL I AS  +  +   I   
Sbjct: 1   MKFLVSSSALLKQISSINGVISTNPMVPILENFLFEIQDGLLTITASDLQTSMITEIDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSI V A +L D ++ L +        E     E  IS  +  + L     ++FP 
Sbjct: 61  SSENGSIAVPARILMDTLKNLPEQPVTFSIDEETYSIE--ISSDNGRYKLAGENATDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E E   + ++++ VL   +  T +A + +E+R  + G++   +E +     VATDG+R
Sbjct: 119 VQEVENPDTVDISADVLATAINHTIYATSNDELRPAMGGVYVKFDETNTTF--VATDGNR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L +    +         II+PRKA+  +   L +++ +V V  + S  +    ++ +  R
Sbjct: 177 L-IRYRRVDVASDSGTGIIIPRKALSLLKNSLPAENVNVAVEFNMSNAYFKFNNIKLICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+D  FP+Y+NVIP  N+ +L +N      ++ R+SI ++     V+L ++  +L +  +
Sbjct: 236 LVDERFPDYENVIPAENNIKLTINRQEFMSSLKRISIYANKTTHQVRLKINGSELQIFAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E M   +    ++I FN K+L+E+++N+ S      EV   + + N +  +
Sbjct: 296 DLDFSNEANEIMACEHQGDDIEIGFNAKFLVEMLNNLDSK-----EVSIDMSAPNKAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D   +   ++MP+ +
Sbjct: 351 FPSD------MDENEDILLLVMPVML 370


>gi|254977344|ref|ZP_05273816.1| DNA polymerase III subunit beta [Clostridium difficile QCD-66c26]
 gi|255094674|ref|ZP_05324152.1| DNA polymerase III subunit beta [Clostridium difficile CIP 107932]
 gi|255102901|ref|ZP_05331878.1| DNA polymerase III subunit beta [Clostridium difficile QCD-63q42]
 gi|255308721|ref|ZP_05352892.1| DNA polymerase III subunit beta [Clostridium difficile ATCC 43255]
 gi|255316428|ref|ZP_05358011.1| DNA polymerase III subunit beta [Clostridium difficile QCD-76w55]
 gi|255519088|ref|ZP_05386764.1| DNA polymerase III subunit beta [Clostridium difficile QCD-97b34]
 gi|255652271|ref|ZP_05399173.1| DNA polymerase III subunit beta [Clostridium difficile QCD-37x79]
 gi|255657640|ref|ZP_05403049.1| DNA polymerase III subunit beta [Clostridium difficile QCD-23m63]
 gi|296452679|ref|ZP_06894370.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP08]
 gi|296880068|ref|ZP_06904037.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP07]
 gi|296258461|gb|EFH05365.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP08]
 gi|296428935|gb|EFH14813.1| DNA-directed DNA polymerase III beta subunit [Clostridium difficile
           NAP07]
 gi|328887503|emb|CAJ66816.2| DNA polymerase III subunit beta [Clostridium difficile]
          Length = 368

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  +   +G A + I  K TI +   +L+   +G L++     EI I   + A 
Sbjct: 1   MKIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + V A L  DI+RKL D        E +    + I+  +S F ++ +   EFP 
Sbjct: 61  IIEKGDVVVDARLFGDIIRKLPDS---FVEIETDSENNIYINCVNSRFKIKGYAAKEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E      + +   +LKN++++T FA++ ++ +  L G    I + +L L  VA DG+R
Sbjct: 118 LPELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAIDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV    + + + +   +I+P K + ++  +LS +D +VKV  +E      I    +  R
Sbjct: 176 LAVKSCSVDS-LTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTKIITR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L++G+F +Y+ ++P  ++  +++N   L  +++R S++S S +   +KLS+    + +T 
Sbjct: 234 LLEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G   E + +  +   +DI FN +Y +E + NI      ++E+     ++ +   I
Sbjct: 294 -NTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVNPCII 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  D          VN  Y+L+P+RI
Sbjct: 348 KPTDD---------VNYIYLLLPVRI 364


>gi|149919820|ref|ZP_01908297.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1]
 gi|149819427|gb|EDM78858.1| DNA polymerase III, beta subunit [Plesiocystis pacifica SIR-1]
          Length = 372

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 110/386 (28%), Positives = 188/386 (48%), Gaps = 15/386 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M+  ++++  L  L  A  + +R++T+PV  +VLL+A  D  L   A+   I +T  +P 
Sbjct: 1   MEFEIDQARFLSALTLASTVADRRSTMPVLANVLLRATTDDELVCCATDMMIALTEKVPC 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   GS+T+    L  +VR L  GA      +N   +   I    S F L   PE +FP
Sbjct: 61  KVSNPGSLTLGVRHLQSVVRTLPSGALRIKSLDN---SWAQILAKRSEFKLMGMPEGDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +        + +  L NL+E+T F+++T+E R  LNG       +      V+TDGH
Sbjct: 118 ELPDASGESFTTVPAHKLVNLIEKTLFSVSTDEARINLNGAMLE--SDGQTATMVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL    +++   +A    IIVPRK + EI ++L+  +  V +++S+  + +  E L++SV
Sbjct: 176 RLTKFSLELEG-LALPREIIVPRKGMDEIRKVLNRVEGEVGIAVSDQYLFVEAEKLTLSV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L +  FP ++ V+P    +   V  T L  A+ + ++++  +   VK+ L    L +  
Sbjct: 235 KLNNVTFPPWKQVVPKDFQRRAGVERTELIGALRQAAVIAPEKTATVKVQLDKGSLRLNA 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DNP++G     + V Y+  P+   FN  YL+E +  +S+D +  D              +
Sbjct: 295 DNPELGAINLELPVDYDGSPLTAGFNANYLIEALGALSADRIYLD-----FQGELDPCVL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R    D  N+    V+   V+MPMRI
Sbjct: 350 RPAPDDEGNDP---VDFLAVVMPMRI 372


>gi|282852315|ref|ZP_06261657.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1]
 gi|282556057|gb|EFB61677.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 224-1]
          Length = 376

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E     +  I   ++ F +     +
Sbjct: 61  ADLVVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVRESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E ++        + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374


>gi|283797184|ref|ZP_06346337.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1]
 gi|291075142|gb|EFE12506.1| DNA polymerase III, beta subunit [Clostridium sp. M62/1]
 gi|295090279|emb|CBK76386.1| DNA polymerase III, beta subunit [Clostridium cf. saccharolyticum
           K10]
          Length = 372

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++ E+  +L  +    + +  K T+P+   +L+ A    +++  +  E+ I   +   
Sbjct: 1   MKLSFEKDSLLNGINIVLKAVPSKTTMPILECILIDATGTEIKLTGNDMELGIETQVEGL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + + A L  DI+RKL  G +     E++      IS   S F +Q     EF  
Sbjct: 61  ILERGKVALDAKLFSDIIRKL-SGEESPIIIESDEKNNTTISCDKSVFKIQGKDGDEFSY 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++ +T F+++  +    + G  F +N+ +LK+  V+ DGHR
Sbjct: 120 IPHIERDRYITLSQFTLKEVIRQTLFSISPNDSNKMMTGELFEVNDNELKV--VSLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++      +  +IVP K +GEI +IL+   +S V++  S + I    +S  +  
Sbjct: 178 MSIRKIELKDHYNDI-KVIVPGKTLGEISKILNGDNESEVQIFFSSNHIMFEFDSTLVVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++ VN      +++R SI+      + + ++++ + + + 
Sbjct: 237 RLIEGEYFRISQMLSSDYETKVNVNRRAFLDSIERASILIRENDKKPIIITITDEGMQLK 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     + +      + I FN K+L++ +  I      D+EV   + +  S  F
Sbjct: 297 MNSA-YGTMNAEVGITKFGKDIMIGFNPKFLIDALRIID-----DEEVTLYMMNPKSPCF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ N  Y+++P+
Sbjct: 351 I----------KDDEENYIYLILPV 365


>gi|164686445|ref|ZP_02210473.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM
           16795]
 gi|164604456|gb|EDQ97921.1| hypothetical protein CLOBAR_00010 [Clostridium bartlettii DSM
           16795]
          Length = 371

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 182/388 (46%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +  +   +G   + I  K T+ +   VL+      + +K    EI I   +PA 
Sbjct: 1   MKIICNQKLLANKIGIVQKAINSKTTLDLLKGVLIVTKQDEIILKGYDLEIGIESHVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GSI +++ L  DI+RKL D        E+     V I+  +S F ++     E+P 
Sbjct: 61  VIQEGSIVINSKLFGDIIRKLPDSFVEIETDED---NNVYINCLNSKFKIKGDSAKEYPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      + +   VLK+++++T FA + ++ +  L G    I   ++ L  VA DG+R
Sbjct: 118 IPDVNEDKLYSIPQDVLKSMIKQTVFATSQDQTKPILMGELLEIENGNINL--VAIDGYR 175

Query: 181 LAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            AV    +           II+P K + ++  +LSS++  VKV  +E      I    + 
Sbjct: 176 FAVRSCQVDNLIHEDLKAKIIIPGKTLIDVNSLLSSEEE-VKVGFNEKNAIFIINDTKIV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCM 297
            RL++GEF +Y+ + P   + ++++   +L  +++R S++S S +   +KLS+    + +
Sbjct: 235 TRLLEGEFIDYKKLCPREYNSKIKLKTKDLLNSIERASLLSQSEQNNLIKLSIRDSMMAI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +N + G   E +++      +DI FN +YLLE + NI       +E+     ++ +  
Sbjct: 295 TSNN-EKGNVYEEVSLSLEGDYLDIAFNSRYLLEGLKNIDC-----EEIYIEFTTNVNPC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+  D              Y+L+P+RI
Sbjct: 349 IIKPAD---------GTKYTYLLLPVRI 367


>gi|255324007|ref|ZP_05365132.1| DNA polymerase III, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|311741698|ref|ZP_07715520.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
 gi|255298864|gb|EET78156.1| DNA polymerase III, beta subunit [Corynebacterium
           tuberculostearicum SK141]
 gi|311303219|gb|EFQ79300.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           pseudogenitalium ATCC 33035]
          Length = 393

 Score =  294 bits (754), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 174/399 (43%), Gaps = 30/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD
Sbjct: 7   FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVD 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL DIV  L +       + +++ ++  ++ G S F L   P  ++P   
Sbjct: 67  EPGQIAVAGKLLSDIVASLPNKE----VEISQVDSKALVTCGSSRFELPLIPLDDYPQLP 122

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +    + +   A   ++    L G+   I  +D+++   ATD  RLA
Sbjct: 123 VLPEVTGTIQPQ-LFVEAIHQVAAAAGKDDTLPMLTGVHMDIRGKDIEM--TATDRFRLA 179

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +  ++   +   + + ++VP K + E  R L    +  V++++        +    L+ +
Sbjct: 180 MRTLEWEPKSPDVEAKLLVPAKTLQETGRSLDPHLNIPVEIAVGTDDNIGADGLFGLHAD 239

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN Q ++P ++     +    L++A+ RVS+++  R   +++  +  
Sbjct: 240 NRETTTRMLDADFPNVQPLLPKNHTNIASIEVAPLQEAIRRVSLLT-DRNAQIRMEFADG 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++    D G A E++   ++      I FN  YL + +  I++     D VVF    
Sbjct: 299 QVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLGVINT-----DRVVFGFTE 352

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++     ++      + N  Y+LMP+R+
Sbjct: 353 PSRPAIMIPEPEELPEADEDGNFPTPETNFTYLLMPVRL 391


>gi|116628685|ref|YP_813857.1| DNA polymerase sliding clamp subunit [Lactobacillus gasseri ATCC
           33323]
 gi|311111575|ref|ZP_07712972.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22]
 gi|116094267|gb|ABJ59419.1| DNA polymerase III, beta subunit [Lactobacillus gasseri ATCC 33323]
 gi|311066729|gb|EFQ47069.1| DNA polymerase III, beta subunit [Lactobacillus gasseri MV-22]
          Length = 376

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E     +  I   ++ F +     +
Sbjct: 61  DDLVVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVRESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E ++        + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374


>gi|291521106|emb|CBK79399.1| DNA polymerase III, beta subunit [Coprococcus catus GD/7]
          Length = 367

 Score =  294 bits (753), Expect = 1e-77,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S +L  +    + +  + T+P+   +L+    G++++ A+  ++ I   +   
Sbjct: 1   MKIICNKSALLTGVNTVLKAVPARTTMPILECILIDTTSGVIKLTANDMDLGIETTVDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A L  +IVRKL D        +N    +  I    + F +      +F +
Sbjct: 61  VLDKGCIALEAKLFSEIVRKLPDSEVTIETDDN---NKALIKCEKAKFNIAGKDGEDFVA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E  +   L+   LK ++ +T F+++  E    ++G    I+++ L+L  V+ DG R
Sbjct: 118 LPEIEKTHFITLSQFSLKEIIRQTIFSISDNESNRMMSGELLQIDQDQLRL--VSLDGQR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +      + ++I P K + EI +ILS   D  V++  ++  +    +   +  
Sbjct: 176 ISIRKISLKESYDPIKAVI-PGKTLNEISKILSGDMDDDVRIYFTDRHVLFEFDQTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           RL++GE+     +I    + ++ +N   L+  ++R S++     +  + ++++   + M 
Sbjct: 235 RLLEGEYFQIDKMISSDYNTKITINKKELQGCIERASLLIRESERKPIIINVTDGSMEMK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  MG   E +++      + I FN K++L+ +  I      D+E+   L +  +   
Sbjct: 295 IQSA-MGSMNEDIDISKEGRDIMIGFNPKFILDALRVID-----DEEITMYLVNPKAPFI 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          K+++ +  Y+++P+
Sbjct: 349 I----------KNDEQSYIYLVLPI 363


>gi|189460118|ref|ZP_03008903.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136]
 gi|189433160|gb|EDV02145.1| hypothetical protein BACCOP_00754 [Bacteroides coprocola DSM 17136]
          Length = 374

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 181/372 (48%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN++P+    LL+  DG L + AS  E  ++ +I   
Sbjct: 1   MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLLELQDGTLSMTASDNETTLSTSIEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G + VS+  L + ++++ +      F+ N    E+ + + +  + L      E+P
Sbjct: 61  EFDGDGHLAVSSKTLLEALKEIPEQP--LSFQINPSNLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+E         + + VL   V R+ FA A +E+R  +NGI+F I  ED+ L  VA+DG
Sbjct: 119 QTQELGSNAVQVNIPADVLMGGVNRSIFATADDELRPVMNGIYFDITPEDITL--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V      A   +  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 177 HKL-VRCKTFAAHSDEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNASFTLENYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +  ++      A+ RVS+ SS     +KLSLS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKATIDRAAFISALRRVSVFSSQASSLIKLSLSENQMKIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y    M I F   +L++I++N+S+       VV  L   + + 
Sbjct: 296 AQDIDFSTSAEETIICQYEGNAMSIGFKSSFLIDILNNLSAQ-----NVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I  ++++   +
Sbjct: 351 VIVPEEQEENED 362


>gi|78043484|ref|YP_361491.1| DNA polymerase III subunit beta [Carboxydothermus hydrogenoformans
           Z-2901]
 gi|77995599|gb|ABB14498.1| DNA polymerase III, beta subunit [Carboxydothermus hydrogenoformans
           Z-2901]
          Length = 371

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 88/389 (22%), Positives = 185/389 (47%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK T   S + E +  A + +  K+  PV   +L +AN  +  + + A+  ++ +  + P
Sbjct: 1   MKFTCPTSILSENISLAQKAVSTKSPFPVLTGILFEANEQNSTITLTATDLQMSVETSFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A +   GS+ +++  L DI++KL +   +  +  NE   +  I +G S   + ++   EF
Sbjct: 61  AKIIEGGSVVLASKFLGDIIKKLPETELMFEYLPNE--GKCVIKYGASEVSVATYRPEEF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +E     SF ++       +++  FA  T+E R    G+ F I  ++L+L  VA+D 
Sbjct: 119 PKNEEVIDGESFYISGEEFSTFIKQVLFATGTDESRPVFTGVLFEIVGQELRL--VASDT 176

Query: 179 HRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRLA  +  I      K  ++I+P + + E +RI  + D  + + +SE ++  +   + +
Sbjct: 177 HRLAFRKTFIKREDTGKNINVIIPSRTLHEAVRIFGTVDE-LLIKISEGQVEFSGNGIKL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM--SSVRIQAVKLSLSSDKL 295
           + RLI+G+FPNYQ VIP +    + +N      +++R +++     +    K  L  + +
Sbjct: 236 TSRLIEGQFPNYQQVIPTAFKSNILINKKYFLDSLERAALLPRDKDKTPVAKFYLERENM 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T  + + G   E + +        + FN +YL++++  + +     +E+   L    +
Sbjct: 296 IITSQS-ESGSIREELPISLEGEEFTVAFNTRYLIDVLKVLET-----EEIYLSLTGPLN 349

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              ++  + +         N   +++P+R
Sbjct: 350 PGVVKPVNDE---------NYLCLVLPVR 369


>gi|227506186|ref|ZP_03936235.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC
           6940]
 gi|227197210|gb|EEI77258.1| DNA polymerase III subunit beta [Corynebacterium striatum ATCC
           6940]
          Length = 393

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 172/399 (43%), Gaps = 30/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I A VD
Sbjct: 7   FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAAMVD 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL DIV  L +  ++   +++   ++V ++ G S F L   P  ++P   
Sbjct: 67  EPGRIAVAGKLLADIVASLPN-KEVEMTQQD---SKVLLTCGSSRFELPVIPLDDYPQLP 122

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +    + +   A   ++    L G+   I+   +++   ATD  RLA
Sbjct: 123 VLPEVTGTVNPQ-LFVEAISQVASAAGKDDTLPMLTGVHMEIHGSHVEM--TATDRFRLA 179

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +   +       + + ++VP K + +  R L +  +  V++++        E    L+ +
Sbjct: 180 MRTFEWEPTSPDVEAKLLVPAKTLQDTGRSLDTHLNIPVEIAVGTGENIGAEGLFGLHAD 239

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN   ++P ++     +    L++A+ RVS+++  R   +++  S  
Sbjct: 240 NRETTTRMLDADFPNVSPLLPKTHTAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEG 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ +     D GKA E++   +       I FN  YL + +  + +     D VVF    
Sbjct: 299 QVTL-AAGADSGKADETLPCAFTGRDEFVIAFNPSYLKDGLAVVHT-----DRVVFGFTE 352

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++     ++      + N  Y+LMP+R+
Sbjct: 353 PSRPAIMIPEPEEMPLADEDGVFPTPETNFTYLLMPVRL 391


>gi|332879970|ref|ZP_08447654.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332681966|gb|EGJ54879.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 373

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 107/386 (27%), Positives = 179/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I   NT+P+  + L + +   L I AS  E  + G +   
Sbjct: 1   MKFIVSSSYLLKKLQVFGGVINSSNTMPILDNFLFELSPNSLTISASDLETTVRGTLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GSI +SA LL DI++   +       KEN     + IS    N+ L     +EFP 
Sbjct: 61  SDSVGSIAISAKLLTDILKTFSEQPLTFLVKEN---NIIEISSTTGNYTLAYLDGAEFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L   VL   +++T FA+  +++R  ++G+ F  NE+ L    V TD H+
Sbjct: 118 PVALPEANKVTLLGDVLATAIQKTIFAVGNDDLRPTMSGVLFQFNEQGLTF--VGTDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V       +  +    I+P+K +  +  IL+  ++ V V  +ES    + + +    R
Sbjct: 176 L-VKYERADIKATEATDFIMPKKPLNILKGILAGSETQVTVEYNESNAEFSFDDMEFICR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY  VIP  N  +L +N +    +V+R+S+ S+     V+L ++   L ++ +
Sbjct: 235 LIDGKYPNYDAVIPKENPNKLTLNRSQFYNSVNRLSLFSNKTTHQVRLKVAGSSLIISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   K  E +   Y    M+I FN K+L E+I+N+ S     DE++  +   N +  I
Sbjct: 295 DVDYSNKGEERLTCNYQGDDMEIGFNSKFLKEMINNLDS-----DEILLEMSLPNRAGII 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D       D       + MP+ +
Sbjct: 350 TPID-----GLDEGEKVLMLAMPIML 370


>gi|154503048|ref|ZP_02040108.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149]
 gi|153796289|gb|EDN78709.1| hypothetical protein RUMGNA_00870 [Ruminococcus gnavus ATCC 29149]
          Length = 369

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 181/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I   +S++++ +    + +  K T+P+   +L+ A+  ++++ A+  E+ I   I   
Sbjct: 1   MRIVCTKSNLVKGVSIVSKAVPSKTTMPILECILVDASTDVIKLTANDMELGIETRIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I ++A +  +IVRKL D   +     +    +  I+   + F + +    +F  
Sbjct: 61  ILERGIIALNAKIFSEIVRKLPDSDVVIETTSD---NQTLITCEKAKFNIAAQSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F I    LK+  V+ DGHR
Sbjct: 118 LPVIEKEDYITVSEFTLKEVIRQTIFSIADNDTNKMMTGELFEIEGNILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++    A+   +IVP K + EI +I+  + ++ V +S +++ I    +   +  
Sbjct: 176 ISIRKIELKENYAQ-KKVIVPGKTLQEISKIIGGEAEALVDISFTKNHIVFEFDKTVVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++R++   L   +DR +++      + + + +    + + 
Sbjct: 235 RLIEGEYFKIDQMLSSDYETKVRIHKKELLDCIDRATLLIKEGDKKPIIIDIKDGTMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E++ +      + I FN K+L++ +  I      D+EV     ++ +  F
Sbjct: 295 IKSQ-IGSMDETIFITKEGKDLLIGFNPKFLIDALRVID-----DEEVDLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD   +  Y+++P+
Sbjct: 349 I----------KDENQSYIYLILPV 363


>gi|116617176|ref|YP_817547.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
 gi|116096023|gb|ABJ61174.1| DNA polymerase III, beta subunit [Leuconostoc mesenteroides subsp.
           mesenteroides ATCC 8293]
          Length = 378

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/395 (23%), Positives = 179/395 (45%), Gaps = 30/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ RS  ++ L    R I  + TIP+  ++ L  ND  L +  S  +I I   +P S
Sbjct: 1   MQFTINRSAFIKALNDVSRAISSRTTIPILTNIKLVLNDEELVLTGSNADISIETTVPQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV++L + A       N  G    I+ G S+F +   
Sbjct: 61  DTSAQLIITTPGGITLPATFFINIVKRLPNDAMTL----NIEGLRATITSGASSFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +    +K  A
Sbjct: 117 DVQNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLQLTGNSVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAKM--PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           V TD HRL+   V +    A     ++I+P K+  E+  +L  +D  V++  S ++   +
Sbjct: 175 VTTDSHRLSQRIVQLTGTDANNVDANVIIPAKSFNELQALLEGQD-RVEIKFSTNQAVFD 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
           +   +   RL++G +P    +IP  +  ++ +  ++L  A+DR S++S   R   V+LSL
Sbjct: 234 LGHTTFYSRLLEGNYPETDRLIPTESTTQITIEASSLLGAIDRASLLSHESRNNVVQLSL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + +  +T  + ++G+  E +N        ++I FN  Y+ + +   +   V       +
Sbjct: 294 KAGRAVLTGTSQEVGQVTEELNANSIEGEDLEISFNPDYVRDALRIFNGKRVD-----VK 348

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S+     +  + +              ++ P+R
Sbjct: 349 FTSNLRPFTLTPEGETDNKQ-------LQLITPVR 376


>gi|291532566|emb|CBL05679.1| DNA polymerase III, beta subunit [Megamonas hypermegale ART12/1]
          Length = 346

 Score =  294 bits (753), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 94/348 (27%), Positives = 183/348 (52%), Gaps = 6/348 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT E+ ++++ +    + +  +  +P+   + ++A+   +E++ +  EI I   I A 
Sbjct: 1   MKITCEKKELVQAIQTVLKAVPSRPQMPILSGIYIKAHQNYIELQGTDYEISIICKIKAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+I +    LY++VR L    +    K N+    VNI    + F L +  E+EFP 
Sbjct: 61  IETEGTIVLPGKYLYEVVRTLPG--EYVEIKNNDSDNSVNIRSNSAQFNLLNMQENEFPI 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  +    F L + +  N +++T FA AT+E R    G    I +E+  +   AT+ HR
Sbjct: 119 IEPLKGQIDFNLKNDIFLNFIKKTSFACATDESRPVFTGCLMDITDEN--IVMAATNMHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+ + +I         II+P K + E   I +S+  + +++S + ++I  + E++ +  
Sbjct: 177 LALIKENINYISDNNIKIIIPAKILNEFTHIFNSEIPTDIQISCTHNKISFSYENIYVIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
           RLI+G+FP+Y  VIP      + +N    + A+DRVS++S S     +      + + ++
Sbjct: 237 RLIEGQFPDYNRVIPKEFKTHVNINKNEFQSALDRVSLISRSGDYNIIHFEFVDNIVRIS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            DNP++GKA E++NV      ++I FN KY+++++  I ++  +   +
Sbjct: 297 SDNPNIGKAEETINVDIEGPGINISFNAKYIIDVLKAIDAENFIFPLI 344


>gi|81251054|gb|ABB69862.1| DNA polymerase III beta chain [Nitrosospira sp. KAN8]
          Length = 369

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 119/389 (30%), Positives = 204/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-- 57
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT     
Sbjct: 1   MKLIETDRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTYTTD 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               D   S+TV+A  L DI+R L +  Q++    +     +    G S F LQ+ P  +
Sbjct: 61  DGKADEEYSVTVAAKKLQDILRALPEKMQVTLETSD---NRLQAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   + ++    LK+L+    +AMA ++IRYYLN     +  E+ +L  VAT
Sbjct: 118 FPKFPESNEPQGTVKVQQKELKHLLSMVQYAMAHQDIRYYLN--GLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALMMLETPLEKKE-VILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVV 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + Y+   +DI FN  YLL++++N  S     + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYDGEGLDIGFNITYLLDVLNNTDS-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|156740759|ref|YP_001430888.1| DNA polymerase III subunit beta [Roseiflexus castenholzii DSM
           13941]
 gi|156232087|gb|ABU56870.1| DNA polymerase III, beta subunit [Roseiflexus castenholzii DSM
           13941]
          Length = 377

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++  + ++   L      +  K+T+PV  ++L+ ++DG L++ A+  EI IT  I A 
Sbjct: 1   MKLSCLQENLKRGLAVVSHAVAGKSTLPVLSNILIASDDGRLKLAATNLEIGITCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++ V A LL D+V  L +   I    +    T +N+        ++     EFP+
Sbjct: 61  IEEEGAVAVPAKLLSDVVGSLPNDR-IDLTLDGRTQT-LNLKCARFESNIKGTESGEFPA 118

Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +    +     ++L+  +++  FA +TEE R  L G+   +   D +    A DG 
Sbjct: 119 IPTVDNRTPTAVFPPTLLRETIQQVAFAASTEETRPVLQGVQLRLR--DNRAIFAAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLSM 237
           RLA   V++   +A+   +I+P +A+ E+ RIL+  +S V++ +  S  ++  +  ++ +
Sbjct: 177 RLAQRIVELPEPVAQPQDLIIPARALNELARILNDDESQVEMIVTHSGGQVLFHTSTVDL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL------SLS 291
             RLIDG++P+   VIP        ++   L +AV   S  +     +V+L       L 
Sbjct: 237 VSRLIDGKYPDVDRVIPQQYQTRAVLDTQELTKAVKLASYFTVAPSNSVRLHMEPGGDLG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++ ++ +  D+G     ++         I  N K+L + I  I +      ++     
Sbjct: 297 PGRMTISANAVDVGDNKGQVDAMIEGEGGQIALNVKFLSDAIAAIPT-----PQLALETQ 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S       +    D            +++MPM
Sbjct: 352 SPQHPAVFKPVGAD---------GYIHIVMPM 374


>gi|300362677|ref|ZP_07058853.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri
           JV-V03]
 gi|300353668|gb|EFJ69540.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus gasseri
           JV-V03]
          Length = 376

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  +KV+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGESDPEIKVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK+SL   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMSLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E +         + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374


>gi|91214601|ref|ZP_01251574.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755]
 gi|91187028|gb|EAS73398.1| DNA polymerase III, beta chain [Psychroflexus torquis ATCC 700755]
          Length = 364

 Score =  294 bits (752), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 92/376 (24%), Positives = 171/376 (45%), Gaps = 17/376 (4%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L+ L     +I   NT+P+  + L + +   L+I AS  E  +  A+       G I V 
Sbjct: 2   LKNLQTLGGVINNNNTMPILDNFLFELDHNSLKISASDLETTMCSALDVESSDQGKIAVP 61

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
           A LL D ++   +        +N     + IS     + L      +FPS    E     
Sbjct: 62  ARLLLDTLKSFPEQPLTFHKLDNHT---IEISSEQGKYALAYANAEDFPSPVSIEDPSQT 118

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            L   +L   + +T FA   +++R  +NG+FF    E   L  V TD H+L         
Sbjct: 119 ILVGDILATAINKTIFATGNDDLRPVMNGVFFRFTPEA--LIFVGTDAHKLVKYSRT-DI 175

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
           +  K    I+P+K +  +  +L   +  V++  +ES    + E+L ++ RL+DG++PNY+
Sbjct: 176 KADKPAEFIMPKKPLNLLKGVLLGSEEDVQIEFNESNAKFSFENLELTCRLVDGKYPNYE 235

Query: 251 NVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIE 309
            VIP  N   L ++ +    +V RVSI S+     ++L ++  +L ++ ++ D   KA E
Sbjct: 236 AVIPQENPNTLTIDRSLFLSSVRRVSIFSNKTTHQIRLKIAGAELNISAEDLDYSNKAEE 295

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
            +   Y    + I FN K+L E+++N++S     +++  ++   N +  +   D      
Sbjct: 296 RLTCDYQGDDLTIGFNSKFLTEMLNNLNS-----EDIKIKMSLPNRAGILTPVD-----G 345

Query: 370 KDNKVNAFYVLMPMRI 385
            +   +   ++MP+ +
Sbjct: 346 LEEGEHITMLVMPVML 361


>gi|284928718|ref|YP_003421240.1| DNA polymerase III subunit beta [cyanobacterium UCYN-A]
 gi|284809177|gb|ADB94882.1| DNA polymerase III, beta subunit [cyanobacterium UCYN-A]
          Length = 391

 Score =  293 bits (751), Expect = 2e-77,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 183/405 (45%), Gaps = 36/405 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN--DGLLEIKASGPEIEITGAIP 58
           MK    ++D    L    R +  + T P+  +VL+ A+     + + A    + I  +  
Sbjct: 1   MKFVCSQNDFSNNLSLVSRAVPTRPTHPILANVLMVADIVKQKISLTAFDLSLGIETSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQ--ISFFKENELGTEVNISHGDSNFYLQSFPES 116
           A++   G  T+ A LL DIV +L +G    IS   ++     + +      F +++    
Sbjct: 61  ANISEGGQTTLPAKLLNDIVSRLPEGEISLISEETKDNQTNLLYLKSASGKFQIRTISAD 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP     E     EL +  +   +    FA + +E++  L G+      + L+    AT
Sbjct: 121 EFPPLPMIENDDFIELPTITITEGLRGVLFASSNDELKQVLTGVHLKGTADSLEF--AAT 178

Query: 177 DGHRLAVAEV------------DIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVS 222
           DGHRL+V E              +  + +   S+ +P KA+ E+ +I+  ++    +++ 
Sbjct: 179 DGHRLSVVEAMFSSEIDNKKEQTLKTKNSNEFSVTIPAKALRELEKIIHNNNDFEVIQLQ 238

Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
           + + ++   +    +++R +DG +P Y  +IP   +  + ++  N   +++RV++++S +
Sbjct: 239 IDDLQVIFYLGKQKLTIRKLDGNYPKYSMLIPQKFEHVISLDRKNFLNSLERVAVLASQK 298

Query: 283 IQAVKLSLSSDK--LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
              VK   ++ K  + ++V+  D+G A ES+         DI FN KYL++ +  +S+  
Sbjct: 299 NNLVKCVFNNKKQIILLSVETQDLGSAEESIEAKITGESGDIAFNIKYLMDGLKALSTK- 357

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               E+  +L+  N  V           N    +   Y++MP+++
Sbjct: 358 ----EIKMQLNEGNKPVIF---------NPLGGLKMTYLVMPVQM 389


>gi|291297540|ref|YP_003508818.1| DNA polymerase III subunit beta [Stackebrandtia nassauensis DSM
           44728]
 gi|290566760|gb|ADD39725.1| DNA polymerase III, beta subunit [Stackebrandtia nassauensis DSM
           44728]
          Length = 380

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 174/391 (44%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + + +    + +  + ++PV    L+  +DG L I     E+     +P +
Sbjct: 1   MKLRVDRDALADAVAWTAKSLPVRPSVPVLAGALMTVSDGQLTISGFDYEVSSQVTLPVT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS  VS  LL +IV+ L              G+ V I+ G + F L + P  ++PS
Sbjct: 61  SDASGSALVSGKLLAEIVKALPAKP----VDVAAEGSHVEITCGSARFTLPTMPVEDYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        + ++     V +T  A   ++    + G+        L L  +ATD +R
Sbjct: 117 LPDMPEAVG-TIDAAAFAAAVAQTAVAAGKDDTLPTMTGVQLEFTGTGLAL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSE------SRIHLNIE 233
           +A+ ++           + ++P KA+ +  + L S+   V ++L +        +    +
Sbjct: 174 MAIRDLPWRPDSNDLNVTTLIPAKALSDTAKALGSRGGEVTIALPDPSNGPIGMVGFAAD 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + R++DG+ P  +++IP +   ELRVN   L     RVS+++  R   ++L++  D
Sbjct: 234 GRRTTSRVLDGQLPPLRSLIPVTYAAELRVNAAELASVARRVSLVT-ERNSPLRLNVDGD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +   A E+M+  Y+   M + FN +YLL+ +  IS+        VF     
Sbjct: 293 GLVVEAGGAEDATASEAMDCEYSGDAMKVAFNPQYLLDGLSAISAPV-----AVFSFTEP 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V ++G DK + ++  +     ++L P+R
Sbjct: 348 GKPVTLKG-DKANADDDGDFSGYTHLLQPLR 377


>gi|126695338|ref|YP_001090224.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9301]
 gi|126542381|gb|ABO16623.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9301]
          Length = 385

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 189/399 (47%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A+ G   + +      + I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADQGTNKISVTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            ++   G+IT+ + LL +IV KL +   +S   E      + I     +F L+  P  E+
Sbjct: 61  GTIKNSGAITIPSKLLSEIVNKLPNETPVSLEVEENSDNIL-IKSDRGSFNLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIA---------KMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +     I             S+ +P +++ EI +++S  S + S+K+   + +
Sbjct: 178 HRLAVALIGNEEDIENKENLSSNVDNLSVTIPNRSLREIEKLVSLRSSEKSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K L  N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTKKLIDALERIAVLADQQSSVVK 297

Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L    L  ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S     + V
Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + + + + +      +D        N  +  Y++MP+++
Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383


>gi|123967537|ref|YP_001008395.1| DNA polymerase III subunit beta [Prochlorococcus marinus str.
           AS9601]
 gi|123197647|gb|ABM69288.1| DNA polymerase III, beta chain [Prochlorococcus marinus str.
           AS9601]
          Length = 385

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 192/399 (48%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A++G   + +      + I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISVTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL +   +S   +      + I     +F L+  P  E+
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPNETPVSLEVDENSDNIL-IKSDRGSFNLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIEPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIA---------KMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +    QI             S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGKEEQIENKENLSSNVDDLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K +  N   L  +++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKIINFNTKKLIDSLERIAVLADQQSSVVK 297

Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L    L  ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S     + V
Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + + + + +      +D        N  +  Y++MP+++
Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383


>gi|188584644|ref|YP_001916189.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
 gi|179349331|gb|ACB83601.1| DNA polymerase III, beta subunit [Natranaerobius thermophilus
           JW/NM-WN-LF]
          Length = 370

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 186/386 (48%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MKI  ++ ++ E L    R I  KNTIP      +Q  +D  L I     E+ I   +  
Sbjct: 1   MKIIFQKDELTEALQATQRGISNKNTIPHLNGFFIQTHSDNTLSIITYDLEMGINYYLST 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GS+ V     +DI++KL +      F  ++    + I  G   + ++     E+P
Sbjct: 61  EILEQGSVVVPTK-FFDIIKKLPEDQIT--FSVDQENYLITIESGQVYYEIKGLDPEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E E   SF +   +LK ++ +T FA++ EE +    G+     + D KL  VATD +
Sbjct: 118 KLPEIEEGKSFSIPEILLKKMIHQTSFAVSKEETKPAFTGVLCKF-DSDNKLDMVATDSY 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  +  I          I+P+KA+G++ RI+S +D  + + L+        E + +  
Sbjct: 177 RLAWRKGKISNDSQISGEYIIPQKAIGQVQRIISEEDKLINLYLANGYFLCETEKVRLFS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           +LID EFPN   VIP +   ++ ++   L+ +++R S+++S      VKL++S + + +T
Sbjct: 237 KLIDEEFPNLDQVIPKNYQTKVMIDRKFLQDSMERASLLASEGANNIVKLNISEENMEIT 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++P  GK  E + +Y     + I  N ++++E++  I      +D+V      S S + 
Sbjct: 297 SNSPHTGKLKEDLQLYKEGDNISIALNARFIIEVLKVIE-----EDQVELEFTGSYSPMI 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR ++ D           F++++P+R
Sbjct: 352 IRPRENDQ---------YFHLILPVR 368


>gi|326202773|ref|ZP_08192640.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM
           2782]
 gi|325986850|gb|EGD47679.1| DNA polymerase III, beta subunit [Clostridium papyrosolvens DSM
           2782]
          Length = 366

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 187/386 (48%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + ++L  +    + +  K T+P+   +LL A D   ++  +  EI I   + A 
Sbjct: 1   MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNAED-KFKLTGNDLEIGIECYVEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ +  DIVR+L D   +     N L   V +   +S+F ++    S +PS
Sbjct: 60  IRSTGSIVINSKIFGDIVRRLPDAEVLIEVTVNNL---VVVECENSHFEIKGINPSGYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L    LK+++ +T FA+ ++E R  L G    + +++  L  V+ DG R
Sbjct: 117 LPVVDKENVLTLTQGDLKDMIRQTVFAVGSDENRPVLTGSLIEVKDKE--LVIVSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+    +   I    S+I+P K + EI +IL + D  V V  S +++  + +S  +  R
Sbjct: 175 LALRRKILENDIND-FSVIIPGKTLNEISKILQATDDEVSVYSSNNQVVFDAKSWRIVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LI+G+F NY +++    + ++ +N    + +++R S++S + +   VKL + +DK+ +T 
Sbjct: 234 LIEGKFLNYNSLLNKDFETKVVINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIVITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D+G   E +        ++I +N  +L++ +  I      +D       ++N+   +
Sbjct: 294 -NADLGNVREEVKAEIEGNSLEIGYNPAFLIDALKAID-----EDRASVYFITTNAPCTL 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R          ++  +  Y++  +RI
Sbjct: 348 RP-------LIESNNDFAYLIQAVRI 366


>gi|238853340|ref|ZP_04643720.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4]
 gi|238834028|gb|EEQ26285.1| DNA polymerase III, beta subunit [Lactobacillus gasseri 202-4]
          Length = 376

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +  R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNVMRAISSRATIPILSGIKLNLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E     +  I   ++ F +     +
Sbjct: 61  DDLVVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVRESFQTKIVSENTEFMINGLDTN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELARIIGENDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E ++        + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEISFKKLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVVPAKQD--------VNFTQLITPVR 374


>gi|322433662|ref|YP_004215874.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9]
 gi|321161389|gb|ADW67094.1| DNA polymerase III, beta subunit [Acidobacterium sp. MP5ACTX9]
          Length = 397

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 117/391 (29%), Positives = 202/391 (51%), Gaps = 22/391 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGAI 57
           +ITV R+++L  L  A  ++ERK TIP+  + L +A++    G L I A+  +  +  + 
Sbjct: 22  EITVSRAELLRELTAAQSVVERKTTIPILSNFLFEASNEGETGRLTITATDLDQSLRTSC 81

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            A V   G+ T+ A  LYD +R L +G       +N     V I  G SN  +     + 
Sbjct: 82  AAKVKKAGACTIPARKLYDYIRLLPEGEISIKLMDNH---WVQIRAGRSNTKMVGMARAN 138

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   E     ++ L+ + LK +V +T FA++ EE RY LNG    +  E   +  VATD
Sbjct: 139 FPQVAEFPASGAYTLSVASLKTMVSKTIFAISNEESRYTLNGALLVLKAES--MAMVATD 196

Query: 178 GHRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIES 234
           GHRLA  E   + +  I+     ++PRKA+ E+  +L+S D  +++ +  +S +   +  
Sbjct: 197 GHRLAHVEKLGETLEGISGEKKTLIPRKALSELSSLLNSTDAETMQFADDDSTLFFKMGG 256

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             ++ R + G+FPNY+ V+P  N+K + V   +L  A+ RV+  +  R  A+K+ L  ++
Sbjct: 257 RVLTSRKLTGQFPNYEAVLPRDNNKFVIVRSEDLMSAIQRVAQFADERSGAIKIRLEQNE 316

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++  + D G++ +++   YN  P+ + FN +YL++ +  I +      EV      + 
Sbjct: 317 LRLSSSSTDSGESEDTIETPYNYDPLVVGFNSQYLIDFLKAIGN----TGEVRLEFKDAQ 372

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S+  +R +D       +  V   Y+LMPMRI
Sbjct: 373 SAGQMRPEDG------NEDVKYRYILMPMRI 397


>gi|15604794|ref|NP_219578.1| DNA polymerase III subunit beta [Chlamydia trachomatis D/UW-3/CX]
 gi|166154296|ref|YP_001654414.1| DNA polymerase III subunit beta [Chlamydia trachomatis 434/Bu]
 gi|166155171|ref|YP_001653426.1| DNA polymerase III subunit beta [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
 gi|14194661|sp|O84078|DPO3B_CHLTR RecName: Full=DNA polymerase III subunit beta
 gi|3328470|gb|AAC67666.1| DNA Pol III (beta chain) [Chlamydia trachomatis D/UW-3/CX]
 gi|165930284|emb|CAP03770.1| DNA polymerase III, beta chain [Chlamydia trachomatis 434/Bu]
 gi|165931159|emb|CAP06724.1| DNA polymerase III, beta chain [Chlamydia trachomatis
           L2b/UCH-1/proctitis]
          Length = 416

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 51  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 111 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 167

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 225

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 399

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 400 -----------DSTRSLFVIMPMRL 413


>gi|58697440|ref|ZP_00372737.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila simulans]
 gi|58536133|gb|EAL59745.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila simulans]
          Length = 353

 Score =  293 bits (751), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 126/371 (33%), Positives = 210/371 (56%), Gaps = 20/371 (5%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+V   G + +SAH 
Sbjct: 2   LSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAATVLTEGEVKISAHT 61

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+ +E+ Y + F L 
Sbjct: 62  LHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPALEEDNYKHDFILL 119

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHRL+  +      I 
Sbjct: 120 NTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHRLSCIKRPKPGNIN 177

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
               +I+PRK V E+L+IL   +  +KV LS+ +I L      +  +LIDG FPNY+ VI
Sbjct: 178 GEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISKLIDGTFPNYKAVI 236

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313
           P S DK + +    L   +DRVS++ S +++++K SL    L +  ++ +   A ES+ V
Sbjct: 237 PASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSNSQECSDATESIEV 296

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
            YNE P++I FN +YLL+++  I       ++  F L   NS+  I  +D  S       
Sbjct: 297 DYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGNSATIITDEDDSSV------ 344

Query: 374 VNAFYVLMPMR 384
               YV+MPMR
Sbjct: 345 ---LYVVMPMR 352


>gi|320120270|gb|EFE27943.2| DNA polymerase III, beta subunit [Filifactor alocis ATCC 35896]
          Length = 363

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 187/385 (48%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV + +  + L  A + I  K  + +     L+A +  L I  +  EI I  +I A+
Sbjct: 2   MKFTVNQREFSDALAIASKAIISKTPLDILKGFYLEAYENELTITGNNLEIGIRTSIDAA 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   + A +L DI+RKL +       K+      V +      F ++   ++ FP+
Sbjct: 62  VETEGKSVIDAKILSDIIRKLPNEEVTVSIKDGN----VLLQCQKLKFTIKEMLDNGFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  ++L+ ++++THFA+ T+E +    G    +  ED ++  +A DG R
Sbjct: 118 VDELEEAVYQNIHPAILEEMIKKTHFAVTTDETKPVFMGELVEL--EDNQMNVIALDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + ++ + +    S+I+P K + EI+R+  + +  VK+ + +           ++ +
Sbjct: 176 LAYKKCELKSSVGSR-SMIIPGKTMVEIMRLCQTMEEDVKIGIEDRHASFLFGRTLVNTQ 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI GEF  Y+ +IP     +++VN      A+DR +++S  +   VKL + +D+L +T  
Sbjct: 235 LIQGEFSKYEEIIPKEFSTKIKVNRQKFIDALDRATLVS--KNYLVKLRIQNDELLITAH 292

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + ++G   E ++V      ++I FN ++ L+ +  +      D+ +    +++ S   I+
Sbjct: 293 DNEVGNLEEILDVELEGKNLEIAFNIRFFLDSLKVME-----DEYIYMNFNTNVSPCIIK 347

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +          + +  Y+++P+RI
Sbjct: 348 PE---------FETDYTYLVLPVRI 363


>gi|166032889|ref|ZP_02235718.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC
           27755]
 gi|166027246|gb|EDR46003.1| hypothetical protein DORFOR_02610 [Dorea formicigenerans ATCC
           27755]
          Length = 369

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 183/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +SD+++ +    + +  K T+P+   +L+ A   ++++ A+  E+ I   I   
Sbjct: 1   MKIVCNKSDLVKGVNIVSKAVPGKTTMPILECILIDATTDIIKLTANDMELGIQTEIAGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +IVRKL D        E +   +  I    + F +   P +EF  
Sbjct: 61  IIDRGMIAIDAKIFSEIVRKLPDNEV---SIETDDRLQTTIVCEKAKFDISGKPGNEFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  ++   LK ++ +T F++A  E    + G  F I +  L++   + DGHR
Sbjct: 118 LPIIEKDDSIVISQFTLKEVIRQTIFSIADTESNKLMTGELFEIKDNVLRV--ASLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++   ++    ++VP K + EI +ILS + +S V++S + + I    ++  +  
Sbjct: 176 ISIRKIELKNPVSD-YKMVVPGKTLIEISKILSGEAESMVEISYTNNHIVFEFDNTIVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G++     ++    D ++R+N       +DR +++      + + + +  + + + 
Sbjct: 235 RLIEGDYFKIDQMLSSDYDTKVRINKKEFLNCIDRATLLIKEGDKKPIIIDIQDEMMELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E + +  +   + I FN K+L++ +  I      D+EV   L ++ +  F
Sbjct: 295 IKSQ-IGSMNEEIMISKDGKDLLIGFNPKFLIDALRVID-----DEEVTLYLMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD   +  Y+++P+
Sbjct: 349 I----------KDETESYIYLILPV 363


>gi|71914140|gb|AAZ54042.1| DNA polymerase III, beta subunit [Thermobifida fusca YX]
          Length = 372

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 172/387 (44%), Gaps = 29/387 (7%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIKASGPEIEITGAIPASVDVCG 65
           + + +    R +  + ++PV   +LL A+D      L + +   E+    ++   +D  G
Sbjct: 2   LADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVSVDVDIDEPG 61

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125
            I VS  LL +IVR L         + +  G +V +S G + F + + P  ++P+     
Sbjct: 62  RILVSGKLLAEIVRNLPPQT----VEVSTDGAKVVVSCGSAKFTILTLPVEDYPTLPAMP 117

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              +  + S      V +   A   ++    L G+   I    + L  V+TD +RLAV E
Sbjct: 118 -ALTGSVLSDTFAAAVSQVAVAAGRDDTLPMLTGVRIEIEGSTVTL--VSTDRYRLAVRE 174

Query: 186 VDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS------ESRIHLNIESLSMS 238
           +    +   + ++ +VP K + +  + L+   + + ++LS      E  I         +
Sbjct: 175 LTWTPEDPNVSAVALVPAKTLADTAKSLTGG-AQISIALSTAENGGEGMIGFEGGGRRTT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL++GEFP Y+ ++P S +    V      +AV RVS+++  R   ++LS +SD+L + 
Sbjct: 234 TRLLEGEFPKYRKLLPESFNSVAEVQKNEFIEAVKRVSLVA-ERNTPLRLSFTSDRLVLE 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               +  +A+E ++       + I FN  +LL+ ++ I SD         +  +S     
Sbjct: 293 AGTGEEAQAVEELSATLEGDDIQIAFNSTFLLDGLNAIESDV-----AHLQFTTSTKPAI 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I GK  D     D      Y++MP+RI
Sbjct: 348 ITGKPADDGTASD----YRYLIMPVRI 370



 Score = 36.0 bits (82), Expect = 9.8,   Method: Composition-based stats.
 Identities = 24/115 (20%), Positives = 47/115 (40%), Gaps = 7/115 (6%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDGHRLAVAEVDIVAQIA 193
           +L + V  T   +        L G+    ++ D   +L   + D    A   VD+     
Sbjct: 1   MLADAVAWTARTLPVRPSVPVLAGMLLDADDVDGHQRLTLSSFDYEVSAQVSVDVDIDEP 60

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDGEFP 247
               I+V  K + EI+R L     +V+VS   +++ ++  S   + + L   ++P
Sbjct: 61  GR--ILVSGKLLAEIVRNLPP--QTVEVSTDGAKVVVSCGSAKFTILTLPVEDYP 111


>gi|76788788|ref|YP_327874.1| DNA polymerase III subunit beta [Chlamydia trachomatis A/HAR-13]
 gi|237804424|ref|YP_002888578.1| DNA polymerase III subunit beta [Chlamydia trachomatis
           B/TZ1A828/OT]
 gi|76167318|gb|AAX50326.1| DNA polymerase III, beta chain [Chlamydia trachomatis A/HAR-13]
 gi|231272724|emb|CAX09628.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/TZ1A828/OT]
 gi|289525120|emb|CBJ14591.1| DNA polymerase III, beta chain [Chlamydia trachomatis Sweden2]
          Length = 416

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 51  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 111 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 167

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 225

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 399

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 400 -----------DSTRSLFVIMPMRL 413


>gi|257456818|ref|ZP_05622002.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580]
 gi|257445824|gb|EEV20883.1| DNA polymerase III, beta subunit [Treponema vincentii ATCC 35580]
          Length = 367

 Score =  293 bits (750), Expect = 3e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 180/385 (46%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  +  +L+ +  A  II  K  I +  +VLL A +G L I+A+  ++     IP  
Sbjct: 1   MKFTFTKEVLLKEMAIAQEIISNKTAISILSNVLLIAKEGSLTIRATDIKVAFETKIPVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV       I+  +  G   +  K+ +L          + F L++  +++FP 
Sbjct: 61  VAEEGATTVFCDKFTSIIASMPSGEIEAEQKDQKLIIRSI--SKKAKFSLKTISDNDFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +   V  FE+ +   K ++ +T FA++ +E RY++NG++    E +  L   ATDG R
Sbjct: 119 FTDSSNVQFFEVPAKDFKEMITQTIFAVSDDETRYFMNGVYMEKKENN--LIFAATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + D    +      I+P K +  + R  SS++  + + +SE  I     + + S  
Sbjct: 177 LAFIQHDFGIALPDFKGSIIPPKILSIVQR-RSSEEGMISIGISEKNIFFRFNAYNFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ VIP S        C +  QA+ RV+++   + + + L +S   L +T +
Sbjct: 236 LIDGQFPNYERVIPESQAHHFEAQCDDFLQALKRVALLVEQKSKRIFLKISDGTLSITSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G A E +   Y    + I  NY YL E +  + S     + +         ++ +R
Sbjct: 296 ENELGTANEEIPCKYEGEEITIALNYMYLEEPLKVLGS-----ENIRIEFTDPMRAITLR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +            + F+++MPM++
Sbjct: 351 PE---------TDTHFFHIIMPMQM 366


>gi|254413972|ref|ZP_05027740.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
 gi|196179108|gb|EDX74104.1| DNA polymerase III, beta subunit [Microcoleus chthonoplastes PCC
           7420]
          Length = 391

 Score =  293 bits (750), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 83/405 (20%), Positives = 184/405 (45%), Gaps = 36/405 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+T    D+   L  +CR +  + + P+  ++LL A  +   + + A    + I     
Sbjct: 1   MKLTCSSVDLQTHLSLSCRAVPSRPSHPILGNILLSACSDTQQIHLTAFNLSLGIKTRFL 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDG-------AQISFFKENELGTEVNISHGDSNFYLQ 111
           A ++  G +T+ A L  DIV  L +G        +    ++ +    + ++H    +  +
Sbjct: 61  AHIETGGQVTIPAKLFQDIVSHLPEGDITVSVQPEPQETEDADPSWMITLTHASGRYQFK 120

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                +FP        +S ++ +S L   V+ +  A +T+E +  L G+   +  + L+ 
Sbjct: 121 GTNPEDFPQLPAINGGHSLQIPTSSLSEGVQSSLVATSTDEAKQVLCGVHLTVQPDFLEF 180

Query: 172 CAVATDGHRLAVAEV--------DIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKV 221
              ATDGHRLAVA+               A+   + +P K + E+ RILS+   ++ + +
Sbjct: 181 --AATDGHRLAVAQTATQVTETETTDEAQAEPTQLTIPTKTLTELDRILSTSKPENPIAL 238

Query: 222 SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
              + ++  + +S  ++ R ++G++P Y+ +IP      + V    L +A++R++I++  
Sbjct: 239 YYCQGQVIFDAQSAYLTSRTLEGQYPEYRALIPKKFKNHITVEKRQLLKALERIAILADP 298

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
           + + ++L+L   ++  +     + G   E +    +   ++I FN +YL+E +    + +
Sbjct: 299 KNKVIRLTLDKKNQHVLLTTATENGTGQEVIPAQISGKDLEIAFNSQYLIEGLKVTKTSD 358

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +  +++ ++S   +               N  Y+LMP++I
Sbjct: 359 -----IRLQINETHSPAILTP---------LGGQNLTYLLMPVQI 389


>gi|220927461|ref|YP_002504370.1| DNA polymerase III subunit beta [Clostridium cellulolyticum H10]
 gi|219997789|gb|ACL74390.1| DNA polymerase III, beta subunit [Clostridium cellulolyticum H10]
          Length = 366

 Score =  292 bits (749), Expect = 4e-77,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 187/386 (48%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + ++L  +    + +  K T+P+   +LL A D   ++  +  EI I   + A 
Sbjct: 1   MKVICSKENLLNGINIVQKAVSTKTTLPILEGILLNA-DDKFKLTGNDLEIGIECYVEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I +++ +  DIVR+L D   +     N L   V +   +S+F ++    S +PS
Sbjct: 60  IRSTGCIVINSKIFGDIVRRLPDSEVLIEVTGNNL---VIVECENSHFEIKGINPSGYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     EL  S LK+++ +T FA+ ++E R  L G    + +++  L  V+ DG R
Sbjct: 117 LPVVEKENILELTQSDLKDMIRQTVFAVGSDENRPVLTGSLIEVKDKE--LVIVSIDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   ++   I    S+IVP K + EI +IL   D  V V  S +++  + +S  +  R
Sbjct: 175 LALRRKNLENDIND-FSVIVPGKTLNEISKILQPTDEEVSVYSSNNQVVFDAKSWRIVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LI+G+F NY +++    + ++ +N    + +++R S++S + +   VKL + +DK+ +T 
Sbjct: 234 LIEGKFLNYNSLLNKDFETKVIINIKEFQSSLERASLISMNDKNSPVKLFIGNDKIIITS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D+G   E +        ++I +N  +L++ +  I      ++       ++N+   +
Sbjct: 294 -NADLGNVREEVKAEIEGNALEIGYNPAFLIDALKAID-----EERASIYFITTNAPCTM 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R          ++     Y++  +RI
Sbjct: 348 RP-------LIESNNAFAYLVQAVRI 366


>gi|294786218|ref|ZP_06751472.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305]
 gi|315225748|ref|ZP_07867536.1| DNA-directed DNA polymerase III beta subunit [Parascardovia
           denticolens DSM 10105]
 gi|294485051|gb|EFG32685.1| DNA polymerase III, beta subunit [Parascardovia denticolens F0305]
 gi|315119880|gb|EFT83012.1| DNA-directed DNA polymerase III beta subunit [Parascardovia
           denticolens DSM 10105]
          Length = 374

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 172/387 (44%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+ +   E +    RII  +   P+   V L+A DG L++ A   E+     I A 
Sbjct: 1   MKVEVDSAAFSEAVSWTTRIIPTRPATPILAGVKLEAADGTLQLSAFNYEVSARNHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L  G           G +V I+ G S F LQ  PES++P 
Sbjct: 61  VDESGTVVVQGKLLADIAKSLPAGKIYLSTS----GAKVTIAAGKSTFSLQLMPESDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +    +      + + +   A++ EE R  L G+    + +  K+   ATD  R
Sbjct: 117 LPSVPAILG-SIDGDTFSHAISQATVAISREETRPVLTGVKMVFSGD--KVQMTATDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237
           L+ +        A + + ++ R ++   +        +V +       + +  +      
Sbjct: 174 LSRSTFTWSPSAADLETELLVRGSLMRDVARSLDASQNVVIGFDPESPTLVSFDNAGKVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP+   +        + VN T+L  A+ RVS+++  R   +++S    +L +
Sbjct: 234 TAQLIDGEFPSVDRLFASDYPIHVVVNKTDLIDAIRRVSLVA-ERNAPIRMSFEGKELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D  +A E++ +  +  P+ I FN  YLLE +  I      +  V  ++ +   +V
Sbjct: 293 SAGSSDESQAQETLPIDMDGEPITIAFNPSYLLEGLGAI-----YEPYVRMKMVAPTKAV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+P+R
Sbjct: 348 EFNGQQE---QDGDESLDYRYLLVPVR 371


>gi|332638151|ref|ZP_08417014.1| DNA-directed DNA polymerase III, beta chain [Weissella cibaria KACC
           11862]
          Length = 376

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 178/394 (45%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+ R+  ++ + +  R I  + ++P+   V L  ++  L +  S  +I I   IP  
Sbjct: 1   MQFTINRAVFIKAMNNVSRAISSRTSMPILTGVKLVLDNNGLTLTGSDTDISIETVIPVT 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   G++ + A    +IV++L      +F   N  G +  I+  +S F +   
Sbjct: 61  DDQATLQVSEPGALVLPAAFFSNIVKRLPGE---TFTLSNTTGFQAKITSENSEFDINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E   +  L +  L  ++ +T  A++ +  +  L G+ F +   +L   A
Sbjct: 118 DANNYPHLPEIEVRNNLTLPAETLTEVIGQTVIAVSKQLSQPILTGVHFILAGGNLT--A 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   V           IIVP  ++ ++  +L  +  +V V ++E+++   + 
Sbjct: 176 VATDRHRLAQRTVAF-GDSDVSADIIVPGPSLNQLQAML-DEVETVDVRVAENQVIFQLG 233

Query: 234 -SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            + +   RL++G +P+   +IP      L +N  +L Q ++R +++S   R   ++ ++S
Sbjct: 234 ANTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVIQFTVS 293

Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            +K  ++ ++P++G+  E +         + I FN  Y+ E + +       D+++    
Sbjct: 294 DEKSLISSNSPEVGRVEEQIFAAETAGDELTISFNPDYMREALKSFG-----DEQIQIGF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            ++     +   + ++        N   ++ P+R
Sbjct: 349 KTALDPFTLVPTNNET--------NFIQLITPVR 374


>gi|227502243|ref|ZP_03932292.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC
           49725]
 gi|306834800|ref|ZP_07467864.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           accolens ATCC 49726]
 gi|227077067|gb|EEI15030.1| DNA polymerase III subunit beta [Corynebacterium accolens ATCC
           49725]
 gi|304569328|gb|EFM44829.1| DNA-directed DNA polymerase III beta subunit [Corynebacterium
           accolens ATCC 49726]
          Length = 393

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 175/399 (43%), Gaps = 30/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD
Sbjct: 7   FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTKVRIAGMVD 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL DIV  L +       + +++ ++  ++ G S F L   P  ++P   
Sbjct: 67  EPGQIAVAGKLLSDIVATLPNKE----VEISQVDSKALVTCGSSRFELPLIPLDDYPQLP 122

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +    +++   A   ++    L G+   I+ +D+++   ATD  RLA
Sbjct: 123 VLPEVTGTIQPQ-LFAEAIQQVAAAAGKDDTLPMLTGVHMDIHGKDIEM--TATDRFRLA 179

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +  ++       + + ++VP K + +  R L    +  +++++        +    L+ +
Sbjct: 180 MRTLEWEPAAEDVEAKLLVPAKTLQDTGRSLDPHLNIPIEIAVGSGDNIGADGLFGLHAD 239

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN Q ++P S+     V    L++A+ RVS+++  R   +++  +  
Sbjct: 240 NRETTTRMLDADFPNVQPLLPKSHTNIASVEVAPLQEAIRRVSLLT-DRNAQIRMEFADG 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++    D G A E++   ++      I FN  YL + +  I++     D VVF    
Sbjct: 299 QVTLSA-GADAGNATETLPCAFHGRDEFLIAFNPGYLKDGLAVINT-----DRVVFGFTE 352

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++     ++      + N  Y+LMP+R+
Sbjct: 353 PSRPAIMIPEPEELPEADEDGNFPTPQTNFTYLLMPVRL 391


>gi|227487661|ref|ZP_03917977.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227541369|ref|ZP_03971418.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51866]
 gi|227092355|gb|EEI27667.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51867]
 gi|227182920|gb|EEI63892.1| DNA polymerase III subunit beta [Corynebacterium glucuronolyticum
           ATCC 51866]
          Length = 391

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 86/393 (21%), Positives = 167/393 (42%), Gaps = 21/393 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D  + +      +  +   PV   +++ A D  LE+     E+     + A V 
Sbjct: 8   FRVAQDDFADAVSWVAHNLPTRPVQPVLRGLVITATDDGLELAGFDYEVSTKVRLNAQVL 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G + V+  L+ DI   L  G      + +E  ++V +S G + F L   P  E+PS  
Sbjct: 68  QNGRLAVAGKLISDITSSLAAGTV--EVETDETHSKVLLSCGKAKFELPIIPLDEYPSLP 125

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                             V +   A   ++    L GI   I   D  L   ATD  RLA
Sbjct: 126 AMPETAGRVDP-HQFTEAVSQVATAAGKDDALPMLTGIHVDIEGSD--LIMAATDRFRLA 182

Query: 183 VAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVR 240
           V  ++       +  S+++P + + +  + + +  +  ++V+L    I +  E+   + R
Sbjct: 183 VRHLEWEPSRELEKSSLLIPARTLLDTAKSMDNGLNKPLEVALGNGLIGMVTENRQTTTR 242

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+D EFPNY  ++P +++     +   L +A+ RVS+++  +   ++++ S+ ++ +T  
Sbjct: 243 LLDAEFPNYNPLLPKTHNYIATCDVDELLKALRRVSLVA-DKSGQIRMTFSAGQVSLTAA 301

Query: 301 NPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           N + G A E +   +      + I FN  YL + ++ + S  V+     F    SN S  
Sbjct: 302 NSESGAAEEVLPAAFQGVEDSLVIAFNPAYLRDGLNVMRSKRVM-----FGFTDSNRSAI 356

Query: 359 IRGKDKDSKNNKDNKVNA------FYVLMPMRI 385
           +  + ++      +   A       Y+LMP+R+
Sbjct: 357 LTPEPEELPEAAADGSFASPHSAVTYLLMPVRL 389


>gi|297588056|ref|ZP_06946700.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC
           53516]
 gi|297574745|gb|EFH93465.1| DNA-directed DNA polymerase III beta subunit [Finegoldia magna ATCC
           53516]
          Length = 367

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 185/386 (47%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + + ++L+ +  A + +  + TI +   +L  A +  L + A+  E+ +       
Sbjct: 1   MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I +++ ++ +I+RKL D        +N     +NI    + F +Q    +EFPS
Sbjct: 61  IYEKGQIVINSSMIGNIIRKLPDDDIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L  S L++ + +T FA + ++ R  L G+ F+I  +  ++  VA DG+R
Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMND--RIEFVALDGYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +++  +  V++       IVP +A+ E+ +IL  ++  + +++    I   +E+  +  R
Sbjct: 175 VSLDCMSNVSEFE--MKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYSR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LIDG++ +Y  V+       + +    L+ A++R S+M+   +   VKL  S ++L ++ 
Sbjct: 231 LIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS 290

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D+GK  E +        + I FN KYLL+ +  I      DD++   +  S   +  
Sbjct: 291 -NTDIGKVDEYVKCEIGGEDLKIAFNAKYLLDGLKVID-----DDDITLNMSGSLRPMVF 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +           N  N  Y+++P+++
Sbjct: 345 KP---------LNDTNYTYLVLPVKL 361


>gi|268318564|ref|YP_003292220.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785]
 gi|262396939|emb|CAX65953.1| DNA polymerase III, beta chain [Lactobacillus johnsonii FI9785]
          Length = 376

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E +         + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRA-----SITDSIIMSFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374


>gi|291561643|emb|CBL40442.1| DNA polymerase III, beta subunit [butyrate-producing bacterium
           SS3/4]
          Length = 372

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T +++ +L  +    + +  K T+P+   +L+ A+   +++ A+  E+ I   +   
Sbjct: 1   MKLTFQKTALLNGINIVLKAVPSKTTMPILECILIDASTDEIKLTANDMELGIETKVEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I RKL D   +   + +E    V I+  +S F +Q     EF  
Sbjct: 61  ILEKGKIALDAKLFSEIARKLSDSDSLVTIESDEKFNTV-ITCENSVFKIQGKDGEEFSY 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   +  L+   LK ++ +T F+++  +    + G  F +N + L++  V+ DGHR
Sbjct: 120 LPYIERNKNITLSQFSLKEVIRQTIFSISVNDSNKMMTGELFEVNGDTLRV--VSLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +  +  +   +IVP K + EI +IL+   +  V++    + I    +   +  
Sbjct: 178 MAIRKIVLKDEY-ESTKVIVPGKTLNEISKILTGDNEKEVQIFFGANHILFEFDDTIVVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++      ++ +N  +   +++R SI+      + + L++   K+ + 
Sbjct: 237 RLIEGEYFKVDQMLSSDYATKVSLNKKDFLDSIERASILIRENDKKPIILNIEDSKMGLK 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     + ++     + I FN K+L + +  I      D+EV   + ++ S  F
Sbjct: 297 LNSS-FGTMNAEILIHKTGQDLMIGFNPKFLSDALRIID-----DEEVTLYMMNAKSPCF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I+ +D+          +  Y+++P+
Sbjct: 351 IKDEDE----------SYIYLILPV 365


>gi|254455931|ref|ZP_05069360.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp.
           HTCC7211]
 gi|207082933|gb|EDZ60359.1| DNA polymerase III, beta subunit [Candidatus Pelagibacter sp.
           HTCC7211]
          Length = 370

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 112/387 (28%), Positives = 206/387 (53%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V + D+ + L +   +IE+++T+P+  ++LL  ++  L I A+  ++     +   
Sbjct: 1   MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNILLDVSNSKLTITATDLDLIFVHQLNNI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G  T ++ ++YDIVRK   G +I+    +   +++ +    S F L     +EFP
Sbjct: 61  EVLEEGKTTTTSSIMYDIVRKFSSGKKINLSLTD--ISKLQVESEKSIFNLNCISATEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE--EDLKLCAVATD 177
            T E      F + S  L  L+ +  F+++ +E R+YL+GI+FH  E  +   L AVATD
Sbjct: 119 LTDENFNENEFVIKSKQLLKLLNKCKFSVSNDETRHYLSGIYFHQTEVEDKNYLTAVATD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            HR++++++ +  Q      II+P+K + ++  +L S D  VKVS  +S+I   + +  +
Sbjct: 179 SHRMSISKIRL-GQKIDFEPIILPKKTIFQLCSLLDSYDGDVKVSNLKSKIKFELNNSIL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG+FPNY  VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L +
Sbjct: 238 ISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLNSVDRVASVSLDKKDGVKFNLSKDILDL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+N + G   E++NV ++   ++I FN +YL+++   +       + V    + + S  
Sbjct: 298 SVNNTNSGDGKETLNVKFD-HDLEISFNSRYLIDVASQLDG-----ERVEIFFNDTGSPA 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I+              ++ +V+MPM+
Sbjct: 352 LIKDP---------GDFDSIFVVMPMK 369


>gi|254526327|ref|ZP_05138379.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT
           9202]
 gi|221537751|gb|EEE40204.1| DNA polymerase III, beta subunit [Prochlorococcus marinus str. MIT
           9202]
          Length = 385

 Score =  292 bits (749), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 96/399 (24%), Positives = 191/399 (47%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
           M+I   ++++   +    + +  + T P+  ++LL A++G   + +      + I  +  
Sbjct: 1   MEIICNQNELNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL     +S   + +    + I     +F L+  P  E+
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPTETPVSLEVDEDSDNIL-IKSDRGSFTLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +     I             S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGNEEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K L  N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297

Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L    L  ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S     + V
Sbjct: 298 IKLDDTDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + + + + +      +D        N  +  Y++MP+++
Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383


>gi|260774540|ref|ZP_05883453.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14]
 gi|260610446|gb|EEX35652.1| DNA polymerase III beta subunit [Vibrio metschnikovii CIP 69.14]
          Length = 308

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 103/323 (31%), Positives = 182/323 (56%), Gaps = 20/323 (6%)

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GSITV A    DI R L D A I+   E   G  ++I  G S F L + P ++FP+ +
Sbjct: 6   EAGSITVPARKFLDICRGLPDSAVITVLLE---GDRISIRSGRSRFSLATLPANDFPNIE 62

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           + +      +  + L+ L+E+T F+MA +++RYYLNG+ F I+   L+  AVATDGHR+A
Sbjct: 63  DWQSDIDITVTQAELRGLIEKTQFSMANQDVRYYLNGMMFEIDASTLR--AVATDGHRMA 120

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           VA+  + +Q      II PRK + E++++L + +  V + +  S +   +     + +L+
Sbjct: 121 VAQTTV-SQALANKQIIFPRKGILELVKLLDAPEQPVVLQIGASNLRAEVNQFVFTSKLV 179

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG FP+Y+ V+P + +K L   C  LRQA  R +I+S+ + + V+++L+   + +T +NP
Sbjct: 180 DGRFPDYRRVLPQNTNKTLITGCDELRQAFSRAAILSNEKFRGVRVNLAEGTMRITANNP 239

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +  +A E ++V +    ++I FN  Y++++++ +       D+V   +  +N+S  I   
Sbjct: 240 EQEEAEEMLDVSFTGEAIEIGFNVSYVIDVLNTLRC-----DQVRISMSDANASALIENV 294

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
           + DS         A YV+MP+R+
Sbjct: 295 EDDS---------AMYVVMPIRL 308


>gi|237802508|ref|YP_002887702.1| DNA polymerase III subunit beta [Chlamydia trachomatis B/Jali20/OT]
 gi|231273742|emb|CAX10522.1| DNA polymerase III, beta chain [Chlamydia trachomatis B/Jali20/OT]
          Length = 416

 Score =  292 bits (748), Expect = 5e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 51  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 110

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 111 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMAIITSGSSCFRLLSMGKEDFPM 167

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 168 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 225

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 226 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 284

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 285 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 344

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 345 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 399

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 400 -----------DSTRSLFVIMPMRL 413


>gi|153815424|ref|ZP_01968092.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756]
 gi|317500886|ref|ZP_07959098.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|331089212|ref|ZP_08338114.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
 gi|145847283|gb|EDK24201.1| hypothetical protein RUMTOR_01659 [Ruminococcus torques ATCC 27756]
 gi|316897766|gb|EFV19825.1| DNA polymerase III [Lachnospiraceae bacterium 8_1_57FAA]
 gi|330405764|gb|EGG85293.1| DNA polymerase III [Lachnospiraceae bacterium 3_1_46FAA]
          Length = 369

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 182/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   + ++ + +    + +  K T+P+   +L+ A+  ++++ A+  E+ I  +I   
Sbjct: 1   MKIICTKQNLAKGVSIVSKAVPSKTTMPILECILIDASTDVIKLTANDMELGIETSIDGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + ++A +  +IVRKL D   I    + +   +  I+ G + F + S P  EF  
Sbjct: 61  IIERGILALNAKIFAEIVRKLPDNEII---IDTQGDNQALITGGKAKFKIASLPGDEFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  +    + G  F I +  LK+  V+ DGHR
Sbjct: 118 LPNIEKDDFITVSEFTLKEVIRQTIFSIADSDTNKMMTGELFEIEDNILKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++++    A    +IVP K + EI +I+  + ++ V +S +++ I    +   +  
Sbjct: 176 ISIRKIELKDSYA-PKKVIVPGKTLQEISKIIGGEAEADVDISFTKNHIVFEFDRTIVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++++N   L + +DR +++      + + + +  + +   
Sbjct: 235 RLIEGEYFRIDQMLSSDYETKVKINKRELLECIDRATLLIKEGDKKPLIIDIRDESMEFK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   E +        + I FN K+L+E +  I      D+EV     ++ +  F
Sbjct: 295 IKSQ-VGSMDEDIMCIKEGKDLLIGFNPKFLIEALRVIE-----DEEVDLYFMNAKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD   +  Y+++P+
Sbjct: 349 I----------KDEAQSYIYLILPV 363


>gi|227889155|ref|ZP_04006960.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
 gi|227850384|gb|EEJ60470.1| DNA-directed DNA polymerase [Lactobacillus johnsonii ATCC 33200]
          Length = 376

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 178/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D  L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEKLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSKGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E +         + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374


>gi|23335940|ref|ZP_00121171.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bifidobacterium longum DJO10A]
 gi|23465221|ref|NP_695824.1| DNA polymerase III subunit beta [Bifidobacterium longum NCC2705]
 gi|189440297|ref|YP_001955378.1| DNA polymerase III subunit beta [Bifidobacterium longum DJO10A]
 gi|227547510|ref|ZP_03977559.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239622841|ref|ZP_04665872.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|296453189|ref|YP_003660332.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           longum JDM301]
 gi|312133631|ref|YP_004000970.1| dnan [Bifidobacterium longum subsp. longum BBMN68]
 gi|317482360|ref|ZP_07941380.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|322688193|ref|YP_004207927.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           infantis 157F]
 gi|322690195|ref|YP_004219765.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|23325849|gb|AAN24460.1| DNA polymerase III, beta chain [Bifidobacterium longum NCC2705]
 gi|189428732|gb|ACD98880.1| DNA polymerase sliding clamp subunit [Bifidobacterium longum
           DJO10A]
 gi|227212025|gb|EEI79921.1| DNA-directed DNA polymerase [Bifidobacterium longum subsp. infantis
           ATCC 55813]
 gi|239514838|gb|EEQ54705.1| DNA polymerase III subunit beta [Bifidobacterium longum subsp.
           infantis CCUG 52486]
 gi|291517732|emb|CBK71348.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           longum F8]
 gi|296182620|gb|ADG99501.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           longum JDM301]
 gi|311772889|gb|ADQ02377.1| DnaN [Bifidobacterium longum subsp. longum BBMN68]
 gi|316916240|gb|EFV37642.1| DNA polymerase III [Bifidobacterium sp. 12_1_47BFAA]
 gi|320455051|dbj|BAJ65673.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320459529|dbj|BAJ70149.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           infantis 157F]
          Length = 374

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 170/387 (43%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ + + P+   V L+A DG L+  A   EI     I A 
Sbjct: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L+             G+ + I+ G S F LQ  P++E+P 
Sbjct: 61  VDEAGSVLVQGKLLADITKSLRSEKTYLVTD----GSTLTITSGKSKFTLQLMPDTEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +      +      V +   A++ EE R  L G+      +  K+   +TD  R
Sbjct: 117 LPVVPAMLGQV-DAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237
           LA A      Q   + +  + R ++ + +     +  ++++       + +         
Sbjct: 174 LARATFTWTPQNPDVDTTTLVRGSLLKDVARALDEHQNIRLDFDADSPTLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +       +  VN  +L  A+ RV++++  R   ++++ +  ++ +
Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMTFTGQEVAL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D  +A E++++  +   + + FN  YL E +       V +  V  ++ +    V
Sbjct: 293 SAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGLSA-----VTEPFVRIKMTTPVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|326802616|ref|YP_004320434.1| DNA polymerase III, beta subunit [Aerococcus urinae
           ACS-120-V-Col10a]
 gi|326651483|gb|AEA01666.1| DNA polymerase III, beta subunit [Aerococcus urinae
           ACS-120-V-Col10a]
          Length = 383

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 190/396 (47%), Gaps = 29/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK T++RS  ++ L +  R I  + TIP+   + +   D  + +  S   I I   I   
Sbjct: 1   MKFTIKRSIFVDHLNNVQRAISSRTTIPILTGIKIAVLDSGIILTGSDSTISIEIYISKE 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 S+   GSI + +  L DIV+KL +       ++N    +  I  G+S F L   
Sbjct: 61  DESNQLSIAETGSIVLPSRFLGDIVKKLPEDQLTLEVQDN---LQTVIRSGESVFNLNGT 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             SE+P+  E +   ++ L   + K +V  T  +++ ++IR    G+ F + +E LK  A
Sbjct: 118 AGSEYPTLPEIDADSTYVLPGHLFKRVVNHTIISVSNQQIRPLFTGVHFILADEQLK--A 175

Query: 174 VATDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           V+TD HRL+   V +        K   I +P + + E+ R++   +  +++ ++++++  
Sbjct: 176 VSTDSHRLSQRIVPLTMPEESQGKALEINIPGQTLTELTRLVDDNE-DIEMMVTDNQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
            I+++ +  RL++G +P+   ++    + +++V+   L  AV+R  I+S   +   VKLS
Sbjct: 235 KIDNVYLYSRLLEGNYPDTDRLLSLDYNTKIKVDAQELVHAVERALILSHQGKNNVVKLS 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           LS ++  ++  + ++G   E ++ + +    ++I FN  YL E + +    +     VV 
Sbjct: 295 LSQEEAILSGHSSEIGYVKEKLSLLSFEGDDLEISFNPDYLREALRSFGGQD-----VVI 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           R  +   S  +   + +      ++ N   ++ P+R
Sbjct: 350 RFVNPTHSFILTPSEDE------DEFNMVQLITPIR 379


>gi|81251046|gb|ABB69856.1| DNA polymerase III beta chain [Nitrosospira sp. 9SS1]
          Length = 369

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 117/389 (30%), Positives = 205/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTD 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               D   S+TV+A  L DI+R L +  +++    +   + +    G S F LQ+ P  +
Sbjct: 61  GGKADEEYSVTVAAKKLQDILRALPEKMRVTLETSD---SRLQAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   +  +    LK+L+    +AMA ++IRYYLN     +  E+ +L  VAT
Sbjct: 118 FPKFPESNEKQGTVTVQQKELKHLLSMVQYAMAHQDIRYYLN--GLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + +   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALMMLETSL-ERKEVILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVV 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L+++ L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTANNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + YN   +DI FN  YLL++++N  S     + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYNGEGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|329666393|gb|AEB92341.1| DNA polymerase III, beta chain [Lactobacillus johnsonii DPC 6026]
          Length = 376

 Score =  292 bits (748), Expect = 6e-77,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E +         + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGEGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374


>gi|210612900|ref|ZP_03289510.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787]
 gi|210151377|gb|EEA82385.1| hypothetical protein CLONEX_01712 [Clostridium nexile DSM 1787]
          Length = 369

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 184/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +++D+++ +    + +  K++  +   +LL+A    + +  +  E+ I   +  +
Sbjct: 1   MKIICKKADLVKAVQTVSKAVPMKSSTTILECILLRAEKEKITLTGNNLELGIETMMSGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GSI + A +  +IVRKL +G  +    E +   +  +    + + L      E+  
Sbjct: 61  IEEEGSIAIQAKVFGEIVRKLPEGDVVLETGEKD---QATVRCKKTKYNLAVKSAEEYTC 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E      ++   LK  + +T F++A    +  + G  + IN ++LK+  VA DGHR
Sbjct: 118 IPDVERKNRVMISEFDLKEAIRQTIFSVADTTTKKAMTGELWEINGKELKI--VALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +  +      +IVP K + E+++I+    +  V V  +E+ I   IE+     
Sbjct: 176 ISLRKVKLKKEYEPR-KVIVPGKNLAEMIKIIGGDPEKEVAVYFTENHIQFEIENTRAIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLSSDKLCMT 298
           RLI+GE+   + ++      +++V    L++ +DR   ++     + + L++  + L + 
Sbjct: 235 RLIEGEYLKVEQLLSKDYGTKIKVQKKELQECIDRAGLLLKDDAKKPIILNIEENILSLE 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V   +MG   ESM +      + I FN K+LLE++  I      D+EV     ++ +   
Sbjct: 295 V-ASNMGSMNESMFIVKEGEKLRIGFNPKFLLEMLRVID-----DEEVFMYFTNAKTPCT 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R          D K +  Y+++P+ +
Sbjct: 349 VR----------DEKDSYVYLVLPVNL 365


>gi|326390363|ref|ZP_08211922.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW
           200]
 gi|325993640|gb|EGD52073.1| DNA polymerase III, beta subunit [Thermoanaerobacter ethanolicus JW
           200]
          Length = 370

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 191/389 (49%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ + E +  A R +  + T+P+   + + A    ++   +  +I I   IPA 
Sbjct: 1   MKFVCDKNSLFEGVNIAIRGVSSRTTLPILQGIKISALKSQVKFSGTDLDIGIECQIPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V A +  ++VRKL +G       E++    VN+     NF +      EFP 
Sbjct: 61  VEEEGEIVVPAKIFSELVRKLPEGDV---KIESDSQNTVNVVCDSINFTIAGSDALEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     SF+L  ++LK+L+ +T F +A E+ R  L G+ F + + ++K  AVA DG R
Sbjct: 118 IPKVSKENSFKLTQNILKDLIRKTVFCIAQEQTRPILTGVLFEVFQNEVK--AVALDGFR 175

Query: 181 LAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           +A+           +  +  SI++P K + EI RIL  +++ +++  + +++   IE+  
Sbjct: 176 MAIYSYQSEEKFFDEDIEKYSIVIPGKTLEEIYRILKDEETEIEIYHTANQVLFQIENTK 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RL++G F NY  V+P     E+ V    L ++++R S+++  +   +K  +    + 
Sbjct: 236 VISRLLEGSFINYNAVLPKDYKTEVVVKREVLTESIERASLIAESKNNLIKFEIGDKFIT 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N + GK +E + V      ++I FN +YLL+ +  I      ++E+     +S + 
Sbjct: 296 VSS-NSEKGKMVEKIEVDVKGMFLEIAFNSRYLLDSLRAID-----EEEITLYFINSINP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+              +  Y+++P+++
Sbjct: 350 LIIKPI---------GSKDYLYMILPVKL 369


>gi|157412339|ref|YP_001483205.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9215]
 gi|157386914|gb|ABV49619.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9215]
          Length = 385

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 192/399 (48%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M+I   +++    +    + +  + T P+  ++LL A++G   + +      + I  +  
Sbjct: 1   MEIICNQNEFNNAIQLVSKAVASRPTHPILANILLTADEGTNKISLTGFDLSLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +V   G+IT+ + LL +IV KL     +S   + +    + I     +F L+  P  E+
Sbjct: 61  GTVKNSGAITIPSKLLSEIVNKLPTETPVSLAVDEDSDNIL-IKSDRGSFTLKGIPSDEY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA + ++ +  L G+ F      L+  + +TDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKSTIFASSNDDSKQLLTGVNFTFKPNYLE--SASTDG 177

Query: 179 HRLAVAEV---------DIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAVA +         + ++      S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVALIGNKEHIENKENLSSNDGNLSVTIPTRSLREIEKLVSLRSTENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP S  K L  N   L  A++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGTYPNYSQLIPDSFSKILNFNTNKLIDALERIAVLADQQSSVVK 297

Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L    L  ++ D  D+G A ES+ V Y+    DI FN +YLLE +  I+S     + V
Sbjct: 298 IKLDDKDLASISADAQDIGNANESIPVSYSGENFDIAFNVRYLLEGLKVIAS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + + + + +      +D        N  +  Y++MP+++
Sbjct: 353 LLKCNIATTPAVFVPED--------NLNSFTYLVMPVQV 383


>gi|330718063|ref|ZP_08312663.1| DNA polymerase III, beta subunit [Leuconostoc fallax KCTC 3537]
          Length = 377

 Score =  292 bits (748), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 86/394 (21%), Positives = 177/394 (44%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  ++ R + ++ L    R I  + TIP+  ++ ++ +D  L +  S  +I I   I   
Sbjct: 1   MHFSINRQNFIKSLNAVSRAISSRTTIPILTNIKIEVSDTQLTLTGSNADISIQTRILDS 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +I+++L        F+    G    I+ G S+F +   
Sbjct: 61  DTTAELIIKETGGITLPATFFSNIIKRLPADT----FELKLEGLRAAITSGASSFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E E   S  ++++ L +++ +T  + +T+E R  L G+ F +  + +K  +
Sbjct: 117 DIQNYPQLPEVEDAESLSVSAAQLTDIISQTIISASTQESRPILTGVHFQLTGDSVK--S 174

Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +    A+    +IVP K+  E+  +L  +D  V + L+ ++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGADAQVNADVIVPAKSFKELGAMLEGQD-RVVIKLTANQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            + +   RL++G +P    +IP  +  EL +N   L  A+DR +++S   R   V+L++ 
Sbjct: 234 GNTTFYSRLLEGNYPETDRLIPTESTTELMINAMTLLGAIDRAALLSHESRNNVVQLTMK 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            +   ++  + ++G+  E+++        ++I FN  Y+ + +         D EV  + 
Sbjct: 294 DNTAVLSGMSQEIGQVKEALDAKKVEGDDLEISFNPDYVRDALRVFH-----DKEVELQF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     I    +              ++ P+R
Sbjct: 349 TSNLRPFTITPAGETDNKQ-------LQLITPVR 375


>gi|219846975|ref|YP_002461408.1| DNA polymerase III subunit beta [Chloroflexus aggregans DSM 9485]
 gi|219541234|gb|ACL22972.1| DNA polymerase III, beta subunit [Chloroflexus aggregans DSM 9485]
          Length = 378

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 90/393 (22%), Positives = 170/393 (43%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T  + D+   L      +  K+ T+PV  +VLL  ++G L++ A+  E+ I   I A
Sbjct: 1   MKLTCMQDDLKRGLAAISHAVAGKSATLPVLANVLLATDNGRLKLTATNLEVGINRWIGA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G++ V A LL D+V  L +         +     + +  G     ++     EFP
Sbjct: 61  NIAQAGAVAVPAKLLADVVGGLPNDTVTLTL--DPKTQTLRVECGRFVSNIKGVDADEFP 118

Query: 120 STKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           S            L + + +  +E+  FA AT+E R  L G+     +  L L  VA DG
Sbjct: 119 SLPAVNTRAPLVSLPAVLWREAIEQVAFAAATDESRPILTGVLVRTRDRQLTL--VAADG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIESLS 236
            RLA+  + +   +A     ++P + + E+ RI+   +  V +      S +  + E+  
Sbjct: 177 FRLAMRTIPLAETVAHAVDCLIPARMLAELARIIGDIEGDVAMVYTPGGSHVLFHTENTE 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS----- 291
           +  RLI+G FP+++ +IP        ++ T L +AV   S  +S     VKL +      
Sbjct: 237 VVSRLIEGRFPDFERIIPQQYLTRTVLDSTELAKAVKLASFFASASQNVVKLKIEPAGEM 296

Query: 292 -SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              ++ ++ ++ ++G     ++         I  N K+L + I  + S+     ++ F +
Sbjct: 297 GPGRIVLSANSAELGDNTSELDGSVTGDGGVIALNVKFLADAIAAVGSN-----QIAFEM 351

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            S+ S    +    D            +++MPM
Sbjct: 352 QSAQSPAVFKPVGHD---------GYIHIVMPM 375


>gi|126697568|ref|YP_001086465.1| DNA polymerase III subunit beta [Clostridium difficile 630]
 gi|260681771|ref|YP_003213056.1| DNA polymerase III subunit beta [Clostridium difficile CD196]
 gi|260207934|emb|CBA60043.1| DNA polymerase III, beta chain [Clostridium difficile CD196]
          Length = 402

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 190/385 (49%), Gaps = 23/385 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           KI   +  +   +G A + I  K TI +   +L+   +G L++     EI I   + A +
Sbjct: 36  KIICNQKILANRIGIAQKAINGKTTIELLKGILISTEEGQLKLTGYDAEIGIETYVQAEI 95

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + V A L  DI+RKL D        E +    + I+  +S F ++ +   EFP  
Sbjct: 96  IEKGDVVVDARLFGDIIRKLPDS---FVEIETDSENNIYINCVNSRFKIKGYAAKEFPKL 152

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E      + +   +LKN++++T FA++ ++ +  L G    I + +L L  VA DG+RL
Sbjct: 153 PELNEEDLYSIPQEILKNMIKQTVFAISQDQTKPVLMGELLEIVDRNLNL--VAIDGYRL 210

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           AV    + + + +   +I+P K + ++  +LS +D +VKV  +E      I    +  RL
Sbjct: 211 AVKSCSVDS-LTENIKVIIPGKTLIDVNSLLSGED-NVKVGFNEKNAIFIINDTKIITRL 268

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVD 300
           ++G+F +Y+ ++P  ++  +++N   L  +++R S++S S +   +KLS+    + +T  
Sbjct: 269 LEGDFIDYKKLLPREHNSRVKLNTKELLNSIERASLLSQSEKNNLIKLSIRDKVMAITS- 327

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N + G   E + +  +   +DI FN +Y +E + NI      ++E+     ++ +   I+
Sbjct: 328 NTEKGNVYEEVEIDLDGDYLDIAFNSRYFIEGLKNID-----NEEIFIEFTTNVNPCIIK 382

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D          VN  Y+L+P+RI
Sbjct: 383 PTDD---------VNYIYLLLPVRI 398


>gi|42518086|ref|NP_964016.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533]
 gi|41582370|gb|AAS07982.1| DNA polymerase III, beta chain [Lactobacillus johnsonii NCC 533]
          Length = 376

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 96/392 (24%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  LE L +A R I  + TIP+   + L   D +L +  S  +I I   IP +
Sbjct: 1   MQFTINRNLFLENLNNAMRAISSRATIPILSGIKLTLTDEMLTLTGSDTDISIEIQIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V   GSI + A    +IV+KL       F  E +   +  I   ++ F +     +
Sbjct: 61  DDLIVQSTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTKIVSENTEFMINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF+++    + ++  T FA+AT+E R  L G+ F  N   +K  AVAT
Sbjct: 118 NYPHLPEISTDASFKISGKTFREIINETVFAVATQESRPTLTGVNFIFNNSSIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+  ++ +         +I+P K++ E+ RI+   D  + V+  E+++   + +++
Sbjct: 176 DSHRLSQRQISLENGPQTSTDLIIPGKSLVELSRIIGESDPEITVNPGENQVLFEVGNIA 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS--SD 293
              RL+DG++P+   +IP  +   +      L ++++R S+++   R   VK++L   + 
Sbjct: 236 FYSRLLDGQYPDTDRLIPTESTTSVEFELPVLARSLERASLLTHESRNNVVKMTLDVQNQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +  D+P++G   E +         + I FN  YL E +        + D ++     
Sbjct: 296 LVKLQGDSPEIGNVEEEIGFKNLEGDGLTISFNPDYLREALRA-----SITDSIIMNFTQ 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +    +D        VN   ++ P+R
Sbjct: 351 PLRPFTVIPAKQD--------VNFTQLITPVR 374


>gi|256826462|ref|YP_003150421.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641]
 gi|256582605|gb|ACU93739.1| DNA polymerase III, beta subunit [Cryptobacterium curtum DSM 15641]
          Length = 365

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 177/387 (45%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + D    L    +    ++T+P+   +       +L ++A+  ++ I  +IPA 
Sbjct: 1   MKFNINKEDFQSTLEIVAKGAAVRSTLPILSGIHCITEGDMLTLEATNLDLSIKRSIPAF 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   + + LL D+V+ L + A              +I    S+F L++F   +FP 
Sbjct: 61  IEEEGEAVIPSKLLTDVVKSLPEAAVHVETTTETA----SIMCESSSFSLKTFDPQDFPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   +     S   ++V+R    ++ +E R  L G+   ++  D  L  VATD +R
Sbjct: 117 FPEVEQTLAISFPFSTFSHMVKRVARVVSRDESRAILTGVLLEVH--DGMLRMVATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV ++D         ++I    +    L  LS    S+ ++L+E++I +  +  +   R
Sbjct: 175 LAVTDIDFTTPSEDFTAVI--SGSFMSDLAGLSDTGESLTLALAENQIVVTYDGTTFINR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMT 298
            I+G +P Y  +IP + +     N   L +AV R S++S+ +   V+  ++     + ++
Sbjct: 233 RIEGNYPRYSQLIPETYETCAIFNTKMLIEAVKRTSLLSN-KTAPVRFDVNKASQTVQIS 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + D+G+A E++         +I FN+ Y+++ + +I +     + V   L  S     
Sbjct: 292 TASQDVGEAHETLGAKIQGEDEEIAFNFGYVIDGLSSIET-----ESVQLELQGSMKPGI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +R  +++         N  Y++MP+R+
Sbjct: 347 LRATEQE---------NFLYLIMPVRL 364


>gi|319940694|ref|ZP_08015036.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis
           3_1_45B]
 gi|319805845|gb|EFW02612.1| hypothetical protein HMPREF9464_00255 [Sutterella wadsworthensis
           3_1_45B]
          Length = 372

 Score =  292 bits (747), Expect = 7e-77,   Method: Composition-based stats.
 Identities = 111/390 (28%), Positives = 198/390 (50%), Gaps = 23/390 (5%)

Query: 1   MKITVER-SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+       +++ +     I+ER  ++PV  ++L++     +    +  +I+I  +   
Sbjct: 1   MKLISSPVEALIKPVRSVAGIVERNQSLPVVSNILIEQKGVDVTFSTTDLDIQIRTSASV 60

Query: 60  SVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            V+   GSIT++A    +I+  L+    +    ++    ++  S G  +F +Q+ P  +F
Sbjct: 61  GVEGCEGSITLNAQKFSEILGALRPLDTLDVDIDDGGLADLTTSGG--HFSMQTLPAQDF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  K   +  +F L +  L+ L+  T FAMA ++IRY+L G+ F +  E  KL AVATD 
Sbjct: 119 PVLKIMPWTTTFTLPAKTLRYLLTMTAFAMAPKDIRYFLMGVLFVV--EGAKLIAVATDT 176

Query: 179 HRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           HRLA  E +I           IVPRK V E+LRIL   D+ V V++ +++I  N   +  
Sbjct: 177 HRLAYCEAEIDGLNQETKIEAIVPRKTVRELLRILPEDDTPVTVNVGDTQIGFNFAGIEF 236

Query: 238 SVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +LI+G+FP+YQ V+P   +N + + +N   L  A+ RV I+++ R   ++   +   L
Sbjct: 237 VSKLIEGKFPDYQRVMPTLDTNPQCVSINREELLLALRRVQILTNERFHGIRWLFTKGSL 296

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   N +  +A + + V +    +DI FN  Y++E+++N+      + EV F   ++  
Sbjct: 297 TVQGSNAEQEEASQKLAVNWEWDDLDIGFNLLYMIELLNNLK-----NSEVNFHFAATPK 351

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SV +   +  S           Y++MPMRI
Sbjct: 352 SVLVTMPESSS---------FRYLIMPMRI 372


>gi|226942153|ref|YP_002797227.1| DNA polymerase III subunit beta [Laribacter hongkongensis HLHK9]
 gi|226717080|gb|ACO76218.1| DnaN [Laribacter hongkongensis HLHK9]
          Length = 377

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 104/379 (27%), Positives = 197/379 (51%), Gaps = 15/379 (3%)

Query: 1   MKI-TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+I   +R  +L+ L     I+ER++T+P+  +VL++ +   L   A+  EI+IT A P 
Sbjct: 1   MQILQADRDALLKPLQAVTGIVERRHTLPILANVLIEKSGDTLTFLATDLEIQITHASPE 60

Query: 60  SVDVC-GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +      +T SA    DI+R + D   ++   E+     + +  G S F LQS P  +F
Sbjct: 61  PIAGPDFRLTTSAKKFSDILRAIPDRTTVTLDHED---GRLTVKAGKSRFNLQSLPADDF 117

Query: 119 PST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           P   +  +    F L     K L+ +  +AMA ++IRYYLNG+    +   +KL  VATD
Sbjct: 118 PLLTQSLDAQAGFALPQRDFKALLSQVQYAMAVQDIRYYLNGLLLVTDGNQVKL--VATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA A++ +   +     +I+PRK + E+ ++L+  D ++ ++L  +++        +
Sbjct: 176 GHRLAFAQMTLDTPLP-AAEVILPRKTITELYKLLADSDDTIDITLMNNQVRFAFGGSVI 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG+FP+Y  VIP  NDK   +    L+QA+ R +I+++ + + V+L++ + +L +
Sbjct: 235 VSKVVDGKFPDYNRVIPLDNDKLFLIGRQALQQALARAAILANEKFRGVRLAIEAGRLRI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             +N +  +A E + + Y    ++I FN  YL +++  +       D +      +N S 
Sbjct: 295 QCNNSEQEEAEEELEIAYGGSGLEIGFNITYLQDVLAALH-----VDTLQLAFGDANRSA 349

Query: 358 FIR-GKDKDSKNNKDNKVN 375
            +   +  + + ++D   N
Sbjct: 350 LVTIPRQSELQVHRDADAN 368


>gi|323486748|ref|ZP_08092067.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum
           WAL-14163]
 gi|323694890|ref|ZP_08109040.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
 gi|323399887|gb|EGA92266.1| hypothetical protein HMPREF9474_03818 [Clostridium symbiosum
           WAL-14163]
 gi|323500980|gb|EGB16892.1| DNA polymerase III [Clostridium symbiosum WAL-14673]
          Length = 372

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 178/385 (46%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++  + +++  +    + +  K T+P+   +L+ A    +++  +  E+ I   +   
Sbjct: 1   MKLSFNKDNLMNGINIVLKAVSSKTTMPILECILIDATSNEIKLTGNDMELGIETKVEGM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A LL DI+RKL     +   + +E    V I+   S F +Q     EF  
Sbjct: 61  ILERGKIALDAKLLSDIIRKLSGDESLITIESDEKFNTV-ITCEKSVFKIQGKDGEEFSY 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++ +T F+ +  +    + G    +N+  LK+  V+ DGHR
Sbjct: 120 IPHIERDNYICLSQFTLKEVIRQTLFSTSPNDSNKMMTGELIEVNDNILKV--VSLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +  Q   +  +IVP K +GEI +IL+   +S V +  + + I    +   +  
Sbjct: 178 MSIRKVILKDQYHDI-KVIVPGKTLGEISKILNGDNESEVLIFFTSNHIMFEFDDTVVVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    D ++ VN      +++R SI+      + + ++++ + + + 
Sbjct: 237 RLIEGEYFRINQMLSSDYDTKVTVNRREFMDSIERASILIRENDKKPIIINITDEGMELK 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     +N+      + I FN K+L++ +  I      D+EV   + +  S  F
Sbjct: 297 LNSA-FGTMNAEINITKFGKDLMIGFNPKFLVDALRIID-----DEEVTLYMMNPKSPCF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD + N  Y+++P+
Sbjct: 351 I----------KDEEENYIYLILPV 365


>gi|297748204|gb|ADI50750.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-EC]
 gi|297749084|gb|ADI51762.1| DNA polymerase III, beta chain [Chlamydia trachomatis D-LC]
          Length = 428

 Score =  292 bits (747), Expect = 8e-77,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 63  MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 122

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 123 VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 179

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 180 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 237

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 238 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 296

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 297 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 356

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 357 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 411

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 412 -----------DSTRSLFVIMPMRL 425


>gi|304570547|ref|YP_265835.2| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
          Length = 370

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 209/387 (54%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V + D+ + L +   +IE+++T+P+  +VLL A++  L I A+  ++     I   
Sbjct: 1   MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G+ T ++ ++YDI+RK   G +I+    +   +++ +    S F L     SEFP
Sbjct: 61  EVIEEGNTTTTSSIMYDIIRKFSSGKKINLSLTD--VSKLQVESEKSVFNLNCISASEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATD 177
            T E      F + S  L  L+ +  F+++ +E R+YL+GIFFH    E+   L A ATD
Sbjct: 119 LTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            HR++++++ +  Q+   P II+P+K + ++  +L S D  VK+S  +S+I   + +  +
Sbjct: 179 SHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSIL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG+FPNY  VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L +
Sbjct: 238 ISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+N + G   ES+ V ++   ++I FN +YL+++   +  D+     +    + + S  
Sbjct: 298 SVNNTNSGDGKESLTVKFD-HDLEISFNSRYLIDVASQLDGDK-----IEIFFNDTGSPA 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I+              ++ +V+MPM+
Sbjct: 352 LIKDP---------GDFDSIFVVMPMK 369


>gi|254496739|ref|ZP_05109598.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12]
 gi|254354034|gb|EET12710.1| DNA polymerase III beta chain [Legionella drancourtii LLAP12]
          Length = 367

 Score =  291 bits (746), Expect = 9e-77,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 196/386 (50%), Gaps = 23/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           + T+++ D+L  L      +++K ++ +  + L +  D LL I A+  EIEI+  +    
Sbjct: 3   EFTIKKEDLLTPLLTVAGAVDKKQSLAILSNFLFKIADNLLFITATDLEIEISAQVACES 62

Query: 62  -DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G+ITV A    DI+R L D A  +   +N     + I  G S+F L + P   +P 
Sbjct: 63  RNTTGAITVPAKKFIDIIRSLDDQASPNLVFDN---GILTIKQGRSSFKLTTLPAEGYPL 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+F         + AVATDGHR
Sbjct: 120 SEDECNDVELSIPRLVLLQLLQATHFAMSQQDVRVFLNGLFLDFEPN--IISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A++             +++P+K V E+LR+L+   D +V ++  +S   L         
Sbjct: 178 MAISRYQC--SHISDKKLLLPKKGVQELLRLLNCIDDENVSLAAGKSHFKLVSSQFVFLS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP + DK++ ++C+ L++A+ R+ I++  + +AV L L    L +  
Sbjct: 236 KLIEARFPPYAKAIPRNQDKQIIIDCSVLKRALSRIVILAHEKSKAVMLHLQPGLLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A+ES+        + I  N  YLL+++ +       D ++   L  ++SS+ I
Sbjct: 296 NNNEQEEAVESLVAETQGDELKIGLNATYLLDVLSHFG-----DGQIRLSLSQTDSSILI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D         N  Y++MPM+I
Sbjct: 351 ESLEND---------NYQYIIMPMKI 367


>gi|82701137|ref|YP_410703.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC
           25196]
 gi|81251042|gb|ABB69853.1| DNA polymerase III beta chain [Nitrosospira multiformis]
 gi|82409202|gb|ABB73311.1| DNA polymerase III, beta subunit [Nitrosospira multiformis ATCC
           25196]
          Length = 369

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 206/389 (52%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A+  EI+IT +   
Sbjct: 1   MKLIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIATDLEIQITTSTTD 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              V    S+TV+A  L DI+R L +  +++    +   + +    G S F LQ+ P  +
Sbjct: 61  GGKVREEYSVTVAAKKLQDILRALPEKMRVTLETND---SRLQAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   + ++    LK+L+    +AMA ++IRYYLN     +  E+ +L  VAT
Sbjct: 118 FPKFPESNETQGTVKVQQKELKHLLAMVQYAMAHQDIRYYLN--GLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + +   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALMMLETSL-ERKEVILPRKVVLELSRLLNETEDPVTIEVLQNQVRFTFSNVV 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTADNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +A E + + YN   +DI FN  YLL++++N  S     + V      +NSS
Sbjct: 295 IVCNNSEQEEAQEELELQYNGDGLDIGFNITYLLDVLNNADS-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|213690931|ref|YP_002321517.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213522392|gb|ACJ51139.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320456977|dbj|BAJ67598.1| DNA polymerase III beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 374

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 170/387 (43%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ + + P+   V L+A +G L+  A   EI     I A 
Sbjct: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIEGTLQFSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L+             G+ + I+ G S F LQ  P++E+P 
Sbjct: 61  VDEAGSVLVQGKLLADITKSLRSEKTYLVTD----GSTLTITSGKSKFTLQLMPDTEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +      +      V +   A++ EE R  L G+      +  K+   +TD  R
Sbjct: 117 LPVVPAMLGQV-DAPTFVQAVNQACVAVSREENRPVLTGVRMQFQGD--KVVMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237
           LA A      Q   + +  + R ++ + +     +  ++++       + +         
Sbjct: 174 LARATFTWTPQNPDVDTTTLVRGSLLKDVARALDEHQNIRLDFDADSPTLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +       +  VN  +L  A+ RV++++  R   ++++ +  ++ +
Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMTFTGQEVAL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D  +A E++++  +   + + FN  YL E +       V +  V  ++ +    V
Sbjct: 293 SAGSVDEAQANETLDIDMDGDDITVAFNPSYLKEGLSA-----VTEPFVRIKMTTPVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|256823907|ref|YP_003147867.1| DNA polymerase III subunit beta [Kytococcus sedentarius DSM 20547]
 gi|256687300|gb|ACV05102.1| DNA polymerase III, beta subunit [Kytococcus sedentarius DSM 20547]
          Length = 378

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 81/391 (20%), Positives = 164/391 (41%), Gaps = 24/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           M+  V+R  + E +    R +  +  +PV   V L A+  G L + A   E+     + A
Sbjct: 1   MEFQVQRDVLSEAVAWVVRGLTNRPPVPVLAGVRLVADPAGTLTLSAFDYEVSGEVTVEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G   V   LL +I R L D       +  + G ++ ++ G S F L   P +++P
Sbjct: 61  DVVTGGEALVLGRLLSEISRSLPDKP----VRIQQDGGKLQVTCGSSRFALLEMPLADYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S        S  +  ++    V +   A    +    L G+    + E  ++  +ATD +
Sbjct: 117 SLPTSPEA-SGTVDGALFTKAVAQVSVAADRSDALPILTGVHVEFDGE--RITMLATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSE-----SRIHLNIE 233
           R+A  E+    +      + +VP + + +  + L +   SV ++L +       I     
Sbjct: 174 RMARRELTWTPRDPSAHHVALVPSRTLSDTAKSLGAV-GSVDIALGDEAGGKGLIGFAAG 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               + RL+DGE+P   ++ P ++D +  +  + L +A+ RVS+++  R   V+L  +  
Sbjct: 233 QRHSTTRLLDGEYPKVSSIFPTTSDVDAVMETSALVEAIKRVSLVA-ERTTPVRLRFTPG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + +     D  +A E++    +   +D+ FN  +LL+ +  + +               
Sbjct: 292 SVAIEAGTGDDAQASEAVECTLDGDEIDVAFNPGFLLDGLGALGT-----PFARMSFTQP 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                + G+   ++ + +      YV+MP+R
Sbjct: 347 GKPALLTGQ---AEADGEADDAFSYVIMPVR 374


>gi|300777078|ref|ZP_07086936.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium
           gleum ATCC 35910]
 gi|300502588|gb|EFK33728.1| DNA-directed DNA polymerase III beta subunit [Chryseobacterium
           gleum ATCC 35910]
          Length = 376

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 163/386 (42%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +   ++ + L     +I    + P+  + L + +   + I AS  E  +  ++   
Sbjct: 1   MKFIISSGELQKALQTVSGVISSSQSRPILENYLFELDGNNVTITASDGETTLVTSLEVK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118
            D  G   V A +  D ++   +       K+N  GT  ++ I     NF +      ++
Sbjct: 61  SDDTGKFAVPAKIFQDFIKTYGEQPLTFVVKDNAEGTGSQLEILDEKDNFAVALDNADDY 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +   S  + + VL   +  T FA + + +R  + G+ F   E +     V+TD 
Sbjct: 121 PELPEFDASQSVTMPAGVLSEALTNTLFATSNDSLRPVMTGVLFQFGENETNF--VSTDS 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL V +       A+    I+P+K +     IL+S +  V +  +E+            
Sbjct: 179 HRLVVYKR-ADLMNAEPMEFIMPKKPLNIFKNILASSNEDVTIDFNENMAKFTFGKHIWI 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY  VIP  N   L +N   L  A+ R SIMS+     V+  LS + L + 
Sbjct: 238 CRLIDGKYPNYTAVIPKENPNVLTINRNLLLGAIKRASIMSNKSTNQVRFKLSGNILHLH 297

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ +   KA   +   YN   ++I F+ K+L E++  + S     D++  ++   N   
Sbjct: 298 AEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLTILGS-----DDITMKMSQPNRPG 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I   D       +   N   + MP+
Sbjct: 353 IIEPVD-----GLEENENILMLSMPV 373


>gi|304437931|ref|ZP_07397877.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
 gi|304369071|gb|EFM22750.1| DNA-directed DNA polymerase III beta subunit [Selenomonas sp. oral
           taxon 149 str. 67H29BP]
          Length = 380

 Score =  291 bits (746), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 102/397 (25%), Positives = 191/397 (48%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +SD++  L    + +  K   P+   V + A +G LE++ +  E+     IPA 
Sbjct: 1   MNITLPKSDLIAALQIVSKGLSTKPQTPILSGVYMNAREGQLELQTTNYELGFIVTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  +    L +  RKL    ++S   E+  G    I  G   F L++   ++FP 
Sbjct: 61  IHGTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGL-AEIRSGTVRFTLRTMEVTDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVATD 177
            +  +    F +   VL  LV+++ FA   EE    R    G    +   ++     AT+
Sbjct: 119 LQRMDGTLQFTIKDRVLARLVKKSAFACLKEEQRDRRPIFTGCQLEVEGREVTF--AATN 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
            HRLAV    +  +  ++  +I+P + + E+ R ++S   S V VS S ++I ++ +++ 
Sbjct: 177 VHRLAVKSEQLEEEAGQIR-VIIPARFLEEVTRTMNSDVPSDVHVSCSYNQISVSFDNIY 235

Query: 237 MSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293
           M+ RLI+G FP+Y+ VIP   +   ++ ++      AVDR S+++ + +   VKL  +  
Sbjct: 236 MTSRLIEGAFPDYRRVIPQDANIRTKVTLDVAAFSAAVDRASLIARTDQYNIVKLRFADG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            +C++ ++P++G+A E++        + I FN  YL++ + ++ SD  +       L  S
Sbjct: 296 MMCISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCI-----LSLQGS 350

Query: 354 N------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N      S + IR         ++   N  YV+ P+R
Sbjct: 351 NEQGVNLSPITIR---------EEADPNYIYVVTPVR 378


>gi|295398134|ref|ZP_06808183.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans
           ATCC 11563]
 gi|294973653|gb|EFG49431.1| DNA-directed DNA polymerase III beta subunit [Aerococcus viridans
           ATCC 11563]
          Length = 383

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 180/396 (45%), Gaps = 29/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK ++ RS  ++ L    R I  + TIPV   V +   +  L +  S   I I   I A 
Sbjct: 1   MKFSINRSVFIQNLTDVQRAISSRTTIPVLTGVKISVKEEGLYLTGSDATISIEAFIDAK 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I + +  L +IV+KL          EN    +  I+   ++F L   
Sbjct: 61  DDDNKLKIEATGDIVLPSRFLGEIVKKLPSDMMNLEVVEN---FQTEITSDRASFTLNGI 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             SE+P   E +   ++ L +   K +V +T  +++ +EIR    GI F I   +LK  A
Sbjct: 118 NGSEYPRLPEIDAKQTYALPTDTFKQVVNQTIISVSNQEIRPIFTGIHFEIGNGELK--A 175

Query: 174 VATDGHRLAVAEVDIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           VATD HRL+   + +         +  I +P +++ E++RI+ S +  +++ ++++++  
Sbjct: 176 VATDSHRLSQRIMPLTMPEVAGDTVLDINIPGRSLQELIRIVDSNE-DIEMMVTDNQVLF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLS 289
              ++ +  RL++G +PN   ++P  +   + V  + L  AV+R  I+S   +   V+L+
Sbjct: 235 KARNIYLYSRLLEGNYPNTDRLLPNDHSTIIEVAASELVNAVERALILSHEGKNNVVRLN 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +S   + ++  + ++G   E +NV       ++I FN  YL E + +          V  
Sbjct: 295 ISDQDIILSSQSAEVGNVEEEINVVKAEGEALEISFNPDYLREALKSFGQQ-----NVQI 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              SS+    +   D+       +  N   ++ P+R
Sbjct: 350 GFQSSSHPFTLLPSDQ------TDNFNFVQLITPIR 379


>gi|67772421|gb|AAY79411.1| DNA polymerase beta subunit [Ehrlichia chaffeensis]
          Length = 375

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 123/386 (31%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
              V +  +L+ L +   I+E++++I V   V ++A D  +++ ++  +I I  +I A V
Sbjct: 8   NFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHV 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +V G + VSA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP  
Sbjct: 68  NVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPII 125

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +  E    F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHRL
Sbjct: 126 ENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRL 183

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSV 239
           ++ ++     +     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   +  
Sbjct: 184 SLTKLSQSQNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILIS 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG FP+Y ++IP S+DK + +    L  A+DRVS++   +++ +KL   S+KL ++ 
Sbjct: 244 KVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSA 303

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + D G A E + V Y+   M I  N +YL+E +  I        + +     + +SV I
Sbjct: 304 ASSDQGDAREELEVDYSGEDMTIGLNARYLMEALYCIKG------KCLLSFYDAGTSVLI 357

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++        N  +  Y++MPMRI
Sbjct: 358 QEEE--------NIDDFTYIIMPMRI 375


>gi|238926598|ref|ZP_04658358.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531]
 gi|238885544|gb|EEQ49182.1| DNA polymerase III beta chain [Selenomonas flueggei ATCC 43531]
          Length = 380

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 99/397 (24%), Positives = 194/397 (48%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +++++  L    + +  K   P+   V + A +G LE++++  E+     IPA 
Sbjct: 1   MNITLSKNELISALQIVSKGLSTKPQTPILSGVYMSAKEGQLELQSTNYELGFIVTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  +    L +  RKL    ++S   E+  G    I  G + F L++   ++FP 
Sbjct: 61  IRSTGTAVLPGKYLTEFARKLP-AEEVSINTESSDGL-AEICSGTARFTLRTMEVTDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVATD 177
               +    F +  +VL  LV+++ FA   EE    R    G    +  +  K+   AT+
Sbjct: 119 LHRIDGTLHFTIKDNVLARLVKKSAFACLKEEQRDRRPIFTGCQLEV--DGHKVTFAATN 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
            HRLAV    +  +  ++  II+P + + E+ R ++S   S V +S + ++I ++ +++ 
Sbjct: 177 VHRLAVKSESLETEAGQIC-IIIPARFLEEVTRTMTSDVPSDVNISCTYNQISISFDNIY 235

Query: 237 MSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293
           M+ RLI+G FP+Y+ VIP   +   ++ ++      AV+R S+++ + +   VKLS +  
Sbjct: 236 MTSRLIEGTFPDYRRVIPQDANIRTKVTLDVATFSAAVERASLIARTDQYNIVKLSFADG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + ++ ++P++G+A E++        + I FN  YL++ + ++ SD  +       L  S
Sbjct: 296 TMRISSNSPEIGEAEETIAAQVEGDDVTIAFNASYLMDAMKSLDSDTCI-----LSLQGS 350

Query: 354 N------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N      S + IR         ++   N  YV+ P+R
Sbjct: 351 NEQGVNLSPITIR---------EEADPNYIYVVTPVR 378


>gi|169823699|ref|YP_001691310.1| DNA polymerase III subunit beta [Finegoldia magna ATCC 29328]
 gi|302380135|ref|ZP_07268608.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3]
 gi|303234446|ref|ZP_07321084.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4]
 gi|167830504|dbj|BAG07420.1| DNA polymerase III beta subunit [Finegoldia magna ATCC 29328]
 gi|302312077|gb|EFK94085.1| DNA polymerase III, beta subunit [Finegoldia magna ACS-171-V-Col3]
 gi|302494401|gb|EFL54169.1| DNA polymerase III, beta subunit [Finegoldia magna BVS033A4]
          Length = 367

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 185/386 (47%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ + + ++L+ +  A + +  + TI +   +L  A +  L + A+  E+ +       
Sbjct: 1   MKLKISQKELLKHINIAQKAVSSRTTIQILEGILFIAEENCLRLVATDLELIVDTRANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I +++ ++ +I+RKL D        +N     +NI    + F +Q    +EFPS
Sbjct: 61  IYEKGQIVINSSMIGNIIRKLPDADIYIEVDDNN----INIKCLSTEFNIQGQDSNEFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L  S L++ + +T FA + ++ R  L G+ F+I  +  ++  VA DG+R
Sbjct: 117 LPYIDKDVKLTLEQSELRDSIRKTSFATSMDQTRPDLTGVLFNIMND--RIEFVALDGYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +++  +  V++       IVP +A+ E+ +IL  ++  + +++    I   +E+  +  R
Sbjct: 175 VSLDCLSNVSEFE--MKAIVPARALNEVYKIL--EEGEITLNIITGNIIFKLENTDVYSR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LIDG++ +Y  V+       + +    L+ A++R S+M+   +   VKL  S ++L ++ 
Sbjct: 231 LIDGQYIDYNQVMKQDFSTVVTIEKRALQMALERASLMAKEDKANLVKLDFSGNELHISS 290

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D+GK  E +        + I FN KYLL+ +  I      DD++   +  S   +  
Sbjct: 291 -NTDIGKVDEYVKCEIGGEDLRIAFNAKYLLDGLKVID-----DDDITLNMSGSLRPMVF 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +           N  N  Y+++P+++
Sbjct: 345 KP---------LNDTNYTYLVLPVKL 361


>gi|91762458|ref|ZP_01264423.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
 gi|91718260|gb|EAS84910.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1002]
          Length = 370

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 115/387 (29%), Positives = 209/387 (54%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V + D+ + L +   +IE+++T+P+  +VLL A++  L I A+  ++     I   
Sbjct: 1   MKFNVNQQDLQQALNYCQGVIEKRSTLPILSNVLLNASNSNLTITATDLDLIFIHQINNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G+ T ++ ++YDI+RK   G +I+    +   +++ +    S F L     SEFP
Sbjct: 61  EVVEEGNTTTTSSIMYDIIRKFSSGKKINLSLTD--VSKLQVESEKSVFNLNCISASEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATD 177
            T E      F + S  L  L+ +  F+++ +E R+YL+GIFFH    E+   L A ATD
Sbjct: 119 LTDENFNQNEFSIKSKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            HR++++++ +  Q+   P II+P+K + ++  +L S D  VK+S  +S+I   + +  +
Sbjct: 179 SHRMSISKIRLDQQVDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSIL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG+FPNY  VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L +
Sbjct: 238 ISKLIDGKFPNYIQVIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V+N + G   ES+ V ++   ++I FN +YL+++   +  D+     +    + + S  
Sbjct: 298 SVNNTNSGDGKESLTVKFD-HDLEISFNSRYLIDVAAQLDGDK-----IEIFFNDTGSPA 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I+              ++ +V+MPM+
Sbjct: 352 LIKDP---------GDFDSIFVVMPMK 369


>gi|295394845|ref|ZP_06805058.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium
           mcbrellneri ATCC 49030]
 gi|294972178|gb|EFG48040.1| DNA-directed DNA polymerase III beta subunit [Brevibacterium
           mcbrellneri ATCC 49030]
          Length = 383

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 164/388 (42%), Gaps = 25/388 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPAS 60
           K  VER    + +  A + + ++  IPV   VL+ A+ +G +       E+     + A 
Sbjct: 12  KFKVERDVFADAVTWAAKNLPQRPVIPVLTGVLVTADSNGTVRFAFYDLEVSQRITVEAD 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+  VS  LL DI R L     +          +V+IS G S F L + P  E+P 
Sbjct: 72  VETPGTFLVSGRLLADIARALPPQQVVLEL----NNGKVDISCGSSRFSLMTMPVEEYPD 127

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                       ++S  ++ V +   A + ++    L  +   I  +  K+  +ATD +R
Sbjct: 128 LPTIPDTTGVV-SASTFQHAVSQVAVAASRDDTLPVLTSVRIEIEGD--KVTLLATDRYR 184

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIESL 235
           LAV +     +      + ++  K + E+ + +S     +++S++ES     +    +  
Sbjct: 185 LAVRQFTWNPRTPDFSANALLRAKTLSEVAKSMS---GDLEISIAESNGKEMLSFTSDGR 241

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            ++  LI+G++P  +++ P  +     +    LR+AV RVS+++  R   +K   +   L
Sbjct: 242 VVTSLLIEGDYPKVRSLFPKESTITAVLQVGALREAVRRVSLVA-ERNTPIKFEFTDGSL 300

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D  +A E++        +   FN  Y+ E ++ I +       V F L     
Sbjct: 301 VLRAGAGDDAQASEALPATIEGGDILTGFNPHYISEGLNAIDT-----PYVRFSLTDPKK 355

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            V I G  +    + +      Y+LMP+
Sbjct: 356 PVVISGMQEP---DGEVDSAYRYLLMPI 380



 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 29/184 (15%), Positives = 73/184 (39%), Gaps = 17/184 (9%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +    F++   V  + V      +    +   L G+    +       A     + L V+
Sbjct: 8   DSTVKFKVERDVFADAVTWAAKNLPQRPVIPVLTGVLVTADSNGTVRFAF----YDLEVS 63

Query: 185 E-VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLI 242
           + + + A +    + +V  + + +I R L      V + L+  ++ ++  S   S + + 
Sbjct: 64  QRITVEADVETPGTFLVSGRLLADIARALPP--QQVVLELNNGKVDISCGSSRFSLMTMP 121

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCM 297
             E+P+    +P   D    V+ +  + AV +V++ +S         +V++ +  DK+ +
Sbjct: 122 VEEYPD----LPTIPDTTGVVSASTFQHAVSQVAVAASRDDTLPVLTSVRIEIEGDKVTL 177

Query: 298 TVDN 301
              +
Sbjct: 178 LATD 181


>gi|209523424|ref|ZP_03271979.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328]
 gi|209496166|gb|EDZ96466.1| DNA polymerase III, beta subunit [Arthrospira maxima CS-328]
          Length = 393

 Score =  291 bits (745), Expect = 1e-76,   Method: Composition-based stats.
 Identities = 96/409 (23%), Positives = 197/409 (48%), Gaps = 42/409 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M++ VE+  +   L    R I  + + P+  ++L++A+     L + A    + I  + P
Sbjct: 1   MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINTSFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V   G +T+ A LL DIV +L  G       + E    V ++     + ++     E+
Sbjct: 61  AQVQQGGVLTLPAKLLNDIVSRLPGGDI--QVDDEETEAVVTLTSSSGRYQVRGMVAEEY 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E  +S +LA+  L   ++ T FA + +E +  L G+   + ++   LC  +TDG
Sbjct: 119 PDLPSVEGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFASTDG 176

Query: 179 HRLAVAEV----DIVAQIAKMPSIIVPRKAVGEILRILSSKDS---------------SV 219
           HRLAV +V    D  +Q  +   I +P +A+ E+ R++ S +S                V
Sbjct: 177 HRLAVVKVENVRDPNSQEPENLEITIPARALREVERMIVSANSARHSAATEEESTTPPMV 236

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            +   ++++   + +  ++ R ++G +P Y+ +IP     ++ V    L  A++R+ +++
Sbjct: 237 TLGFDDTQVVFELGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLAALERIGVLA 296

Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNI 336
           S +   VK  +   + ++ ++V+  D+G A+ESM    +   P ++ FN KYL++ +  +
Sbjct: 297 SQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLKVL 356

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S      E+  +L+++++ V I         N    +   Y++MP+++
Sbjct: 357 NSS-----EIQIQLNAASTPVII---------NPFGGLKMTYLVMPIQL 391


>gi|330752164|emb|CBL87124.1| DNA polymerase III, beta chain [uncultured Flavobacteria bacterium]
          Length = 373

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 172/386 (44%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L  L     +I+  NT+P+  H L+    G L I AS  E  +T A+   
Sbjct: 1   MKFIVSSSKLLRSLQTVSGVIQSNNTLPILDHFLVHLTPGKLTITASDIETTMTTALAVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                +  + A +L D V+   +      F  N     + +S     + L     SE+P 
Sbjct: 61  SSEEITAAIPAKILLDTVKSFPEQP--LTFTLNSSTHSLEVSSDFGKYALAYVDPSEYPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +       S  ++   L   + +T FA   +++R  ++G+FF    E L    VATD H+
Sbjct: 119 SASLNEADSINISEKTLGTAINKTLFAAGNDDLRPVMSGVFFQFTNEGLTF--VATDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L                +I+P+K +  +   L S  ++V +S ++         +++  R
Sbjct: 177 LVRYSRK-DILAPSTAELILPKKPLTLLKTTLGSGGNNVSISYTDQNAQFTYGEVTLLCR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PN+Q VIP  N   L  +   L  +V R+SI S+     VKL ++ ++L ++ +
Sbjct: 236 LIDGKYPNFQAVIPKDNPNHLVADRMALLSSVKRISIFSNKTTHQVKLKVAGNELNISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   KA E +   Y    M+I FN ++L+E++ N+ S     DE++  + + N +  +
Sbjct: 296 DLDFSNKANERLTCNYQGTDMEIGFNSRFLIEMLSNLES-----DEIILEMSAPNRAGIL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                      D       ++MP+ +
Sbjct: 351 LPD-----GGLDEGEELLMLVMPVML 371


>gi|68171925|ref|ZP_00545242.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
 gi|67998647|gb|EAM85383.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
          Length = 375

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 124/386 (32%), Positives = 209/386 (54%), Gaps = 20/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
              V +  +L+ L +   I+E++++I V   V ++A D  +++ ++  +I I  +I A V
Sbjct: 8   NFFVSKDKLLQALSYINSIVEKRHSIVVLSCVRIEARDQEIKLTSTDLDISIIASITAHV 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +V G + VSA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP  
Sbjct: 68  NVNGVVVVSAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPII 125

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +  E    F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHRL
Sbjct: 126 ENNELQNKFTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRL 183

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSV 239
           ++ ++     I     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   +  
Sbjct: 184 SLTKLSQSQNILSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILIS 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++IDG FP+Y ++IP S+DK + +    L  A+DRVS++   +++ +KL   S+KL ++ 
Sbjct: 244 KVIDGTFPDYNSIIPRSHDKNVLIESETLSNAIDRVSVVVFDKVKVIKLRFVSNKLILSA 303

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + D G A E + V Y+   M I  N +YL+E +  I        + +     + +SV I
Sbjct: 304 ASSDQGDAREELEVDYSGEDMTIGLNARYLMEALYCIKG------KCLLSFYDAGTSVLI 357

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + ++        N  +  Y++MPMRI
Sbjct: 358 QEEE--------NIDDFTYIIMPMRI 375


>gi|148658484|ref|YP_001278689.1| DNA polymerase III subunit beta [Roseiflexus sp. RS-1]
 gi|148570594|gb|ABQ92739.1| DNA polymerase III, beta subunit [Roseiflexus sp. RS-1]
          Length = 377

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 170/392 (43%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++  + ++   L      +  K+T+PV  ++LL ++DG L++ A+  EI IT  I A 
Sbjct: 1   MKLSCLQENLKRGLAIVSHAVAGKSTLPVLSNILLASDDGRLKLAATNLEIGITCWIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G++TV A LL D+V  L +   I    +    T +N+        ++     EFP+
Sbjct: 61  IEDEGAVTVPAKLLSDVVGSLPNDR-IDLTLDVRTQT-LNLKCARFETNIKGTEAGEFPT 118

Query: 121 TKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +    +     ++L+  +E+  FA ATEE R  L G+   +   D +    A DG 
Sbjct: 119 IPTIDDRTPAAIFPPALLRETIEQVAFAAATEETRPVLQGVQLRLR--DNRAIFAAADGF 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV--KVSLSESRIHLNIESLSM 237
           RLA   +++   I +   +I+P +A+ E+ RI+   +S V   ++    ++  +  ++ +
Sbjct: 177 RLAQRIIELPEPIVQQQELIIPARALTELARIVDDDESPVEMMITPGGGQVLFHTSTVDL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS------ 291
             RLI+G FP+   VIP        ++   L +AV   S  +      V+L +       
Sbjct: 237 VSRLIEGRFPDVDRVIPQQYQTRAVLDRQELTKAVKLASFFAVASSNIVRLHMEPGGEMG 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++ ++ +  ++G     ++         I  N K+L + I  I +      ++     
Sbjct: 297 PGRITISANAVEVGDNKGQIDATIQGDGGQIALNVKFLSDAIAAIPT-----PQIALETQ 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S       +    D            +++MPM
Sbjct: 352 SPQHPAVFKPVGAD---------GYIHIVMPM 374


>gi|227543720|ref|ZP_03973769.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300908785|ref|ZP_07126248.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           SD2112]
 gi|227186288|gb|EEI66359.1| DNA-directed DNA polymerase [Lactobacillus reuteri CF48-3A]
 gi|300894192|gb|EFK87550.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus reuteri
           SD2112]
          Length = 380

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 175/396 (44%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T+ RS  +  L +  R I  K TIP+   + +  N   + +  S  +I I   I A+
Sbjct: 1   MNFTINRSAFISQLNNILRAISSKTTIPILTGLKMVVNKDNIVLTGSNSDITIESVINAN 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G+I + A    DIV+KL D        E   G + +I+ G + F +   
Sbjct: 61  DAENDLTIEATGAIVLPARFFSDIVKKLPDKKV---TIEVTSGFQADITSGSAKFQINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               FP   E E   S  L + +LK ++ +T  A++ +E R  L G+   +   D  L A
Sbjct: 118 DAENFPHLPEIETNKSVTLPNDILKEVIRQTVIAVSKQESRPILAGVHMTLK--DGVLTA 175

Query: 174 VATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           VATD HRLA  +V +     +    +I+P K++ E+  ++S     V++ ++E+++    
Sbjct: 176 VATDSHRLAQRKVVLENIDNSIDFDVIIPGKSMEELSGMISDVHEDVQMQVTENQVLFIF 235

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            +     RL++G +P    +IP + D  + +       +++R S++S   R   VKLSL 
Sbjct: 236 GNTHFYSRLLEGNYPETSQLIPQTADTTVELEAGTFLSSIERASLLSHESRNDVVKLSLK 295

Query: 292 SDK--LCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             +  + ++ D+PD+G   E  +    +   ++I FN  Y+ + + +          +  
Sbjct: 296 PSESLVRISGDSPDIGTVEEKVVTSALDGNDLEISFNPNYMKDALRSFGQAT-----IKI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              S      +   +         + N  +++ P+R
Sbjct: 351 SFTSPLRPFTLVPTED--------QENFVHLITPVR 378


>gi|302384446|ref|YP_003820268.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1]
 gi|302195074|gb|ADL02645.1| DNA polymerase III, beta subunit [Clostridium saccharolyticum WM1]
          Length = 373

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T ++ +IL  +    + +  K T+ +   + + A+   +++ A+  E+ I   +  +
Sbjct: 1   MKLTFKQDEILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A LL +IVRKL          E++      IS  +S F++Q     EF  
Sbjct: 61  ILERGKIALEAKLLSEIVRKLSSAGDSLVTIESDEKFTTTISCENSVFHIQGRDGEEFAY 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E  +   L+   LK ++ +T F++A  +    + G  F +    LK+  V+ DGHR
Sbjct: 121 LPYIERDHYICLSQFSLKEVIRQTIFSIAPNDSNKMMTGELFQVTGNQLKV--VSLDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++      +  +IVP K + E+ +IL    +  V +  S + I    +   +  
Sbjct: 179 ISIRNIELKDTYHDI-KVIVPGKTLNEVSKILGGDSEKEVLIFFSTNHILFEFDDTIVVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + +  VN   L   +DR +I+      + + +++   ++ + 
Sbjct: 238 RLIEGEYFRIDQMLSSDYETKTSVNKRQLLDCLDRATILVRENDKKPLIMNIEDQEMELK 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     + ++     + I FN K+L++ +  I      D+EV   + +  S  F
Sbjct: 298 MNSS-FGSMNAQVPIHKTGSDIMIGFNPKFLIDALRIID-----DEEVTLYMLNPKSPCF 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D +    Y+++P+
Sbjct: 352 IR----------DEEGKYIYLILPV 366


>gi|239834278|ref|ZP_04682606.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
 gi|239822341|gb|EEQ93910.1| DNA polymerase III, beta subunit [Ochrobactrum intermedium LMG
           3301]
          Length = 351

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 192/385 (49%), Gaps = 36/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++++RS +   L    R IE +N+IP+  +VLL   DG L +  +  ++EIT ++P  
Sbjct: 2   MRVSIDRSQLAHALATVTRAIETRNSIPILANVLLAVEDGQLRLTGTDLDVEITTSLPVL 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV   +L DI +++  G           G  + ++ G S + L   P  +FPS
Sbjct: 62  DCHSGSATVPGKMLADIAKRV-TGDITLELDAASSGGRLTVASGRSRYKLDVLPAEDFPS 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               ++  + EL    L  LV     A++T++ R +L+G+FFH +E   +L AVATDGHR
Sbjct: 121 FSVGKFDTTLELD---LVALVAPCVHAISTDKARQFLHGVFFHSHEG--RLVAVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     D   +      +I+P K V  + +        +K+SLS++++ +      ++ +
Sbjct: 176 LVRNYGD---EGDTEYGVILPSKLVAMLPK------GVIKLSLSQTKVRIEAGGTVITSK 226

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G FP++  +IP  N   L V+   L  A+ RVS +++   +AVKL ++ D LC+++ 
Sbjct: 227 LIEGTFPDHARLIPTGNSIILTVDRQQLIGALGRVSAIATDASRAVKLEVA-DVLCLSIA 285

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           +    KA + +    +  P+ I FN KYL +++  +      + +V F      S   + 
Sbjct: 286 D----KAQDEIEGELDGEPLTIGFNPKYLQDMLGAVD-----EKDVCFAFSDGMSPAVLT 336

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
           G+            N   V+MP+R+
Sbjct: 337 GQG-----------NWTGVVMPLRV 350


>gi|94264232|ref|ZP_01288027.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|94266206|ref|ZP_01289915.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93453213|gb|EAT03671.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
 gi|93455343|gb|EAT05547.1| DNA-directed DNA polymerase [delta proteobacterium MLMS-1]
          Length = 376

 Score =  290 bits (744), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 101/390 (25%), Positives = 190/390 (48%), Gaps = 25/390 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V R + L  L     I  +K T+ V  ++LL+A +  L +  +  E+ +   +PA V 
Sbjct: 5   FNVPRPEFLAALASLQNIAGKKGTLAVLANILLEAKEDGLTLTTTDLEVGLRCRVPAEVT 64

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G IT+ A  L+++VR+ Q        ++N   T V I+ G+S+  L      EFP+  
Sbjct: 65  SPGEITLPARKLFELVREAQADQIEIAEQDN---TRVKINAGNSDCRLAGMAADEFPAFP 121

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFF--HINEEDLKLCAVATDGH 179
             +      + + V++ L+++T +A+A E E  + L G+     I E+   L  V++DGH
Sbjct: 122 PHQDDNLVAVEAEVIRELIDKTIYAVAHEGEGNFNLAGLLLEKEILEDGHFLRMVSSDGH 181

Query: 180 RLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           RLA+ E  + A +  +     I+VPRK + E+ ++  S    + +++ E ++ +     +
Sbjct: 182 RLAMMESKVEADLGPLAMDRVILVPRKGMQEVRKLCESG-GQIALAIEEKQLVVKAGEYT 240

Query: 237 MSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           M  RL+ G+FP+Y+++I     +  + +N  +L  ++ RV+I +  R  AV   + + ++
Sbjct: 241 MVARLMSGDFPDYKSIIQVIDKNTFIGINRESLMHSLRRVNIFTEDRYNAVHFIIENSRM 300

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  N D G A E + + Y    M + FN KY  E +  + S     + V   +++ +S
Sbjct: 301 TLSSQNMDYGSAKEDIPITYEGDTMRLGFNGKYFYEALQVMDS-----EMVKAYINAEDS 355

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++G         D       V+MPM+I
Sbjct: 356 PCLLQG---------DKDPGYLSVIMPMKI 376


>gi|266620979|ref|ZP_06113914.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479]
 gi|288867360|gb|EFC99658.1| DNA polymerase III, beta subunit [Clostridium hathewayi DSM 13479]
          Length = 373

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 173/385 (44%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T ++  IL  +    + +  K T+ +   + + A+   +++ A+  E+ I   +  +
Sbjct: 1   MKLTFQQDAILNGINIVLKAVPSKTTMSILECIFIDASGSEIKLTANDMELGIETKVEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A LL +IVRKL          E++      IS   S F++Q     EF  
Sbjct: 61  IHERGKIALDAKLLSEIVRKLSSAGDSVVTIESDEKFTTTISCEKSVFHIQGRDGEEFAY 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++ +T F++A  +    + G  F ++   LK+  V+ DGHR
Sbjct: 121 LPYIERDNYICLSQFTLKEVIRQTIFSIAPNDSNKMMTGELFQVSGSQLKV--VSLDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++  V++      +  +IVP K + E+ +IL    +  V +  S + I    +   +  
Sbjct: 179 ISIRNVELKDTYHDI-KVIVPGKTLSEVSKILGGDNEKEVLIFFSSNHILFEFDDTIVVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++ VN   L  +++R +I+      + + +++   +L + 
Sbjct: 238 RLIEGEYFRIDQMLSSDYETKITVNKRELLDSIERATILIRENDKKPLIINVVDQELQLK 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     +  +     + I FN K+L++ +  I      D+EV   + +  S  F
Sbjct: 298 MNSS-FGSMNAEVAAHKTGSDIMIGFNPKFLIDALRIID-----DEEVTLYMLNPKSPCF 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D +    Y+++P+
Sbjct: 352 IR----------DEEGKYIYLILPV 366


>gi|116491820|ref|YP_803555.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC
           25745]
 gi|116101970|gb|ABJ67113.1| DNA polymerase III, beta subunit [Pediococcus pentosaceus ATCC
           25745]
          Length = 379

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 93/395 (23%), Positives = 180/395 (45%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+ R+  ++ L    R I  K TIP+   + ++A +  L +  S  +I I   I   
Sbjct: 1   MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIEAEEDRLILTGSNTDISIETTISTN 60

Query: 59  -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  G++ ++A    DIV+KL D   +   K+   G +  I+ G S F +   
Sbjct: 61  DEEAHLNIESTGAVVLTARFFGDIVKKLPDNTMLLEVKD---GFQTTITSGASEFKINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + FP   E +   +  L + V   ++  T  A++ +E R  L GI F I     KL A
Sbjct: 118 DANNFPHLPEVDSQTTITLKADVFSEMINETVIAVSNQESRPILTGIHFTIEGN--KLSA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   +++   I     II+P K++ E+ R+L  +  ++ + +SE++     +
Sbjct: 176 VATDSHRLSQRVINLPEPIKMPEDIIIPGKSLLELSRMLDDEIDTITLQISENQALFTFD 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS- 291
                 RL++G +P+   +IP  +  E+      L  +++R S++S + R   VKL+++ 
Sbjct: 236 ETLFYSRLLEGLYPDTSRLIPKESSTEMEFEAPELLASIERASLLSHAGRNNVVKLTINA 295

Query: 292 -SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + +  ++ D+P++G   E +         ++I FN  YL + + +          +   
Sbjct: 296 ANKQAIISGDSPEVGNVEEEVVTKDIVGEDLEISFNPDYLKDALRSFGHTS-----IKMA 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S+     +   +         + N   ++ P+R
Sbjct: 351 FTSALRPFTLVPTED--------QENFIQLITPVR 377


>gi|260437690|ref|ZP_05791506.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876]
 gi|292809916|gb|EFF69121.1| DNA polymerase III, beta subunit [Butyrivibrio crossotus DSM 2876]
          Length = 365

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 170/385 (44%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S++L+ +    R +  + T+ +   +L+ A +  +++ A+  E+ I   I   
Sbjct: 1   MKIVCTKSELLKGVNITLRAVPVRTTMTILECILIDATELDIKLTANDMELGIETTIEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A    DI+RKL D        E +     +I+   S F + +    +F  
Sbjct: 61  IIEKGKIAIEAKFFADIIRKLPDSEI---TIETDSNFNASITCEKSVFNIPARDGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK L+ +T F++   E    + G  F + E++LK+  V+ D +R
Sbjct: 118 LPYIEKNNMITISQFDLKELIRQTIFSIGDNESNLIMTGELFEVTEDNLKV--VSLDRYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  V +   I     +IVP K + EI +I++   +S V V  S++ I    +   +  
Sbjct: 176 VSIRNVKL-NNIYNDIKVIVPGKTLNEISKIITGDAESMVDVYFSDNHILFEFDKTIVIS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMT 298
           RLI+GEF     ++    + ++ +N   L   +DR ++       + V   +    + + 
Sbjct: 235 RLIEGEFFKINQMLSKDYETKITINKRELLDCIDRATLFVKEGNKKPVIFDIEDGSVKIN 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +GK  E +++      + I FN K++++ +  I      D+ +     ++ S   
Sbjct: 295 ITST-VGKMNEEIDIEKEGSDIKIGFNPKFVIDALRVID-----DETISMTFMNAKSPCT 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR KD              Y+++P+
Sbjct: 349 IRDKDN----------RYIYLILPV 363


>gi|148358141|ref|YP_001249348.1| DNA polymerase III subunit beta [Legionella pneumophila str. Corby]
 gi|296105499|ref|YP_003617199.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99
           Alcoy]
 gi|148279914|gb|ABQ54002.1| DNA polymerase III beta chain [Legionella pneumophila str. Corby]
 gi|295647400|gb|ADG23247.1| DNA polymerase III subunit beta [Legionella pneumophila 2300/99
           Alcoy]
          Length = 367

 Score =  290 bits (743), Expect = 2e-76,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 197/386 (51%), Gaps = 23/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +    
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 62  D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A    DI+R L +    S   +  L   V I    S F L + P   +PS
Sbjct: 63  NNTSGSITVPAKKFIDIIRSLDENPSPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+      +   + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A++             +++P+K V E+LR+L+   D  V ++  +S I L         
Sbjct: 178 MAISRYSC--NNITQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP   DK + ++C  L++A+ R+ I++  + +AV L L   +L +  
Sbjct: 236 KLIEARFPPYTKAIPREQDKYIVIDCATLKRALSRIVILAHEKSKAVLLHLQPGQLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +AIE+++       + I  N  YLL+++ + S     D ++   + ++ SS+ I
Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLAHFS-----DGQIRLSMSNTESSILI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D         N  Y++MPM+I
Sbjct: 351 ESLVND---------NYQYIIMPMKI 367


>gi|281356711|ref|ZP_06243202.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC
           BAA-548]
 gi|281316838|gb|EFB00861.1| DNA polymerase III, beta subunit [Victivallis vadensis ATCC
           BAA-548]
          Length = 364

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 93/384 (24%), Positives = 177/384 (46%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV R  + + L     II  ++ +PV  +V++QA +G+L +  +  EI I+  + A 
Sbjct: 1   MKFTVNREKLQKALQRVGSIIGSRSMLPVLGNVMIQAEEGVLTLTTTDLEIRISTKVDAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G  T  A  L  +V        +    + +    + I  G S+F L   P ++FP+
Sbjct: 61  VEEAGVTTAPARKLASLVGCFVGTDVVFEVDDKD---HIKIKCGTSHFTLLGLPAADFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E     ++  S  K ++    +A++ ++ R  L G+     E  + L  VATDG R
Sbjct: 118 AVEFEAQREIKIKESDFKRMIGSISYAVSADDSRKVLTGVLLSARESTVTL--VATDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E    A        I+P KA  E  R+L   D+ + + L + +         ++ +
Sbjct: 176 LAMQEKTPEAIEGGDGDAIIPLKAASEARRLLE-GDAVMTIRLGDKQCTFVAGGFELTTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G +PNY+ V+P S  + + V  +     ++ VS++ S     + L   +++L +   
Sbjct: 235 LIEGTYPNYRQVVPASFARTVEVPTSVFLAKIETVSLVLSDSSSYIILRFENNQLNLQAS 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + ++G+  + + + +   P ++ FN  YL + + N  +D+     +  +++   + V I 
Sbjct: 295 SAEVGEGSDMVEIAFEGEPFEVSFNPAYLADPLRNADADK-----IRMKINDPLNPVAIE 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
           G +              YV+MP+R
Sbjct: 350 GSE-----------GFLYVIMPIR 362


>gi|300742655|ref|ZP_07072676.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567]
 gi|300381840|gb|EFJ78402.1| DNA polymerase III, beta subunit [Rothia dentocariosa M567]
          Length = 375

 Score =  290 bits (743), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 92/389 (23%), Positives = 180/389 (46%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L++A  G + I +   EI     I AS
Sbjct: 1   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAKSGEVSISSFDHEISAKQTIEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+  V   +L +I R L + A + F   +   + + ++   + F L   P +++P 
Sbjct: 61  VEQEGTCLVPGKMLAEICRSLPN-ADVEFVAND---STIFMTCRSAKFQLAGMPVADYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V +   A++ +E    L GI   I+   + L  +ATD +R
Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237
           LA+ E+    +  ++  ++++  K + E+ R LSS    + ++L E+   I  +  S   
Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296
           +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  + D ++ 
Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVA-ERNTPLRLQFTEDGQVS 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A ESM    +   + + +N  YL E +    +     D V F    +   
Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G+D+      +  ++  Y++ P+R+
Sbjct: 347 AVLSGQDEP---LSEEDLSYRYLVQPIRL 372


>gi|302336539|ref|YP_003801746.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084]
 gi|301320379|gb|ADK68866.1| DNA polymerase III, beta subunit [Olsenella uli DSM 7084]
          Length = 367

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 98/387 (25%), Positives = 182/387 (47%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V +S + + L    + +   +T+P+   +L+ A +G L  + +   I +   I A 
Sbjct: 1   MKFSVSQSSLSQALAVVSKGMGSNSTLPILSGILITAAEGTLTFQTTDLTINVRHRIAAM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS  VS  +L +IV+ L D A      E      V+IS   S F L +   S+FP 
Sbjct: 61  VEEAGSTVVSGKILMNIVKTLPDAAVSFEGGE----RVVSISCDKSTFRLNTLDPSDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     + EL SS+L  +V++ +   + +  R  L+G+   + E  ++L  VATD +R
Sbjct: 117 FPQFALGRTIELPSSLLSEMVDKVYKVTSRDTSRPILSGVLLSVEENTIRL--VATDSYR 174

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV + +     A      IVP     ++L  L S    V +  ++S++     + +   
Sbjct: 175 LAVCDSNAETSSADEAFQTIVPGMTFHDVL-TLPSMTEKVLIGTTDSQVVFVFGNTTYIT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
           R I+G FPNY+ ++P   +  ++VN +    A+ RVS+++ +     V +      + ++
Sbjct: 234 RKIEGNFPNYKQLLPADCNTSVKVNVSEFASALKRVSVIALANPSVRVDIDTDGGVMKLS 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G++ E + V      M I  NY Y+ + ++  ++++    E+   L S+     
Sbjct: 294 ASSPDQGESTELLPVDVEGQSMSIALNYHYVFDCVNAAANEK----EITLELLSAMQPGI 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +            K+N  Y+LMP+R+
Sbjct: 350 FKS---------YAKINYLYLLMPVRM 367


>gi|325066320|ref|ZP_08124993.1| DNA polymerase III subunit beta [Actinomyces oris K20]
 gi|326772842|ref|ZP_08232126.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505]
 gi|326637474|gb|EGE38376.1| DNA polymerase III, beta subunit [Actinomyces viscosus C505]
          Length = 376

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 155/389 (39%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + E +    R +  +  +PV   V L+A    L + +   E+     + A 
Sbjct: 1   MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + VS  LL DI + L +       +    G +V +S G + F L +    ++P+
Sbjct: 61  VEEDGVVLVSGRLLADIAKALPNKPVDLEVE----GNKVAVSCGSARFSLAAMAADDYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 V    + +  L   V +   A + ++    L  +   +    L L  +ATD +R
Sbjct: 117 LPVMPAVAG-TIDAHDLARAVGQVSIAASRDDTLPLLTSVQIEVEGSSLVL--MATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDS----SVKVSLSESRIHLNIESL 235
           LA+ E+       ++  + ++  + + ++ + L+S           S + S I       
Sbjct: 174 LAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +  L DG++P  + + P S      V    L  AV RVS+++  R   + +S +   L
Sbjct: 234 RTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVA-DRSTPIHMSFTQGNL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D  +A E +  +     +   FN  YLL+ +  ++        V      ++ 
Sbjct: 293 ELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALN-----QPYVRLDFTHASK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + G D           +  Y+LMP+R
Sbjct: 348 PAVLTGMDS---IGGTEDSSFRYLLMPIR 373


>gi|325298420|ref|YP_004258337.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
 gi|324317973|gb|ADY35864.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
          Length = 374

 Score =  290 bits (742), Expect = 3e-76,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 184/372 (49%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  +++   L    R+I  KN++P+    LL+ +DG L + +S  E  ++ +I   
Sbjct: 1   MKFIVSSTNLFNHLQAISRVINSKNSLPILDCFLLELHDGTLSMTSSDNETTLSTSIEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  L + ++++ +      F+ N    E+ + + +  + L     +E+P
Sbjct: 61  EFDGDGRFAVSSRTLLEALKEIPEQP--LAFQVNLDTLEITVQYQNGQYNLMGQNANEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             ++         + + +L + V R  FA A +E+R  +NGI+F I  ED+ L  VA+DG
Sbjct: 119 QPQDLGANAVRLTMPAEILMSGVNRCIFATADDELRPVMNGIYFDITPEDITL--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V      A   +  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 177 HKL-VRNKTYAAHGTEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +  ++  +L  A+ RVS+ SS     +KL+LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAILDRASLISALRRVSVFSSQASSLIKLNLSDNQIKIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y+  PM I F   +L++I++NI +       V   L   + + 
Sbjct: 296 AQDIDFSTSAEETVICQYDGNPMSIGFKSSFLIDILNNIPAA-----NVTIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I  ++++   +
Sbjct: 351 VIVPEEQEENED 362


>gi|311112570|ref|YP_003983792.1| DNA-directed DNA polymerase III subunit beta [Rothia dentocariosa
           ATCC 17931]
 gi|310944064|gb|ADP40358.1| DNA-directed DNA polymerase III beta subunit [Rothia dentocariosa
           ATCC 17931]
          Length = 375

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 177/389 (45%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + E +G   R +  + T PV   +L++A  G + I +   EI     I AS
Sbjct: 1   MKFTVERDVLAEAVGWTARSLPLRPTSPVLNGLLIKAESGEVSISSFDHEISAKQTIEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+  V   +L +I R L +        +    + + ++   + F L   P +++P 
Sbjct: 61  VEQEGTCLVPGKMLAEICRSLPNADVEFVAND----STIFMTCRSAKFQLAGMPVADYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   + S  +  +     V +   A++ +E    L GI   I+   + L  +ATD +R
Sbjct: 117 LPELPQI-SGTVDGAEFAKAVSQVQIAVSKDETLPLLTGIRLEISGSTMTL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237
           LA+ E+    +  ++  ++++  K + E+ R LSS    + ++L E+   I  +  S   
Sbjct: 174 LAMREITWNPENPEIEAAVLLKAKTMTEVGRTLSSS-GELSIALPENGDLIGFSAGSRRT 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD-KLC 296
           +  L+DG++PN + + P        V  ++L +A  R+S+++  R   ++L  + D ++ 
Sbjct: 233 TSVLMDGQYPNLRALFPTETAVHAVVRTSDLAEAARRISLVA-ERNTPLRLQFTEDGQVS 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A ESM    +   + + +N  YL E +    +     D V F    +   
Sbjct: 292 IDAGRGDEARASESMPAQLDGHEITVAYNPTYLSEGLGAFDT-----DFVRFSFTEAPKP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G+D+      +  ++  Y++ P+R+
Sbjct: 347 AVLSGQDEP---LSEEDLSYRYLVQPIRL 372


>gi|81251065|gb|ABB69870.1| DNA polymerase III beta chain [Nitrosospira sp. PJA1]
          Length = 369

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 118/389 (30%), Positives = 201/389 (51%), Gaps = 24/389 (6%)

Query: 1   MKIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP- 58
           MK+   +R  +L+ L     I+ER++T+P+  +VL++     +   A   EI+IT     
Sbjct: 1   MKLIEADRDTLLKPLQTVTGIVERRHTLPILSNVLIERKQENISFIAPDLEIQITTYTTD 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
               D   S+TV+A  L DI+R L +  Q++    +     +    G S F LQ+ P  +
Sbjct: 61  GGKADEEYSVTVAAKKLQDILRALPEKVQVTLETSD---NRLQAKAGKSRFNLQTLPAED 117

Query: 118 FPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP   E  E   + ++    LK+L+    +AMA ++IRYYL      +  E+ +L  VAT
Sbjct: 118 FPKFPESNEPQGTVKIQQKELKHLLSMVQYAMAHQDIRYYL--NGLLLLLENNQLKVVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA A + +   + K   +I+PRK V E+ R+L+  +  V + + ++++     ++ 
Sbjct: 176 DGHRLAFALIMLETPLEKKE-VILPRKVVLELSRLLNETEEPVTIEVLQNQVRFTFSNVV 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++DG+FP+Y  VIP    K+  +N   L Q + R +I+S+ + + V+L L++D L 
Sbjct: 235 LVSKVVDGKFPDYNRVIPTGYQKQFDINRLLLLQTLQRAAILSNEKFRGVRLILTTDNLR 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +N +  +  E + + YN   +DI FN  YLL++++N  S     + V      +NSS
Sbjct: 295 IVCNNSEQEETQEELELQYNGEGLDIGFNITYLLDVLNNAES-----ETVTCAFGDANSS 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     DS           YV+MPMRI
Sbjct: 350 ALITIPGNDS---------FKYVVMPMRI 369


>gi|291547606|emb|CBL20714.1| DNA polymerase III, beta subunit [Ruminococcus sp. SR1/5]
          Length = 371

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 179/387 (46%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S +L+ +  A + +  K T+P+   +L+ A    ++   +  E+ I   +  +
Sbjct: 1   MKIICSKSSLLKSVSIALKAVPSKTTMPILECILMDATTNQIKFTTNDMELGIETIVEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + + A + Y+I+R+L D        +    T   I+   + F +      +F  
Sbjct: 61  IEEKGKVALDAKIFYEIIRRLPDNDVTIKTDDKYAAT---ITCEKAKFNIPGKSGEDFAY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      ++   LK ++ +T F++A  E    + G  F I    LK+  V+ DGHR
Sbjct: 118 LPMIEKDEPLTISQYTLKEMIRQTIFSIAVNENNKLMTGELFEIKNNCLKV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +    +    ++VP K + E+ +ILS + D  V +  +++ I    +   +  
Sbjct: 176 ISIRKMSLKKDYSDR-KVVVPGKTLSEVSKILSGEVDDQVSIYFTKNHILFEFDQTMVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + +L++N       +DR +++      + + ++++ D + + 
Sbjct: 235 RLIEGEYFRIDQMLSSDYETKLKINKKEFLDCIDRATLLVREVDKKPIIINITDDDMELR 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +D+  MG   E +++      + I FN K+L++ +  I      D+ V   L +  +  F
Sbjct: 295 IDSA-MGSMNEEIDIEKEGKDIMIGFNPKFLIDALRVID-----DETVTIYLVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          D++ N  Y+++P+ I
Sbjct: 349 IR----------DDEENYTYLILPVNI 365


>gi|163814986|ref|ZP_02206373.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759]
 gi|158449669|gb|EDP26664.1| hypothetical protein COPEUT_01139 [Coprococcus eutactus ATCC 27759]
          Length = 368

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 183/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ ++++L+ +    + +  K T P+   +L++A+ G++++ A+  EI I   +  +
Sbjct: 1   MKISIRKANLLQGITTVSKAVSNKTTHPILSCILVEASGGIIKLTANDMEIGIESYVDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + + A L  D +RKL D        E++   +  I      F L     ++F +
Sbjct: 61  VIEDGKVALEAKLFSDFIRKLPDSEI---SIESDKENKTLIKCERLEFNLPGKSGNDFSN 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      ++   L++++ +T F+++  E    + G  F ++    +L  V+ DGHR
Sbjct: 118 LPVVSKDKYITISQFALRDVINQTIFSISDNENNKLMTGELFEVSNN--RLSVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +D+    + +  ++VP K++ +I +I++   D  V +  +E+ I    ++  +  
Sbjct: 176 ISIRYIDLKGDNSDI-KVVVPGKSLSDISKIMNGGVDDPVNIYFNENNILFEFDNTKVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+    +++      ++++N      ++DR +++      + ++LS+    L + 
Sbjct: 235 RLIEGEYFRISHMLSVDYQIKMKINKREFLDSLDRATLLIKESDKKPIRLSIGDRNLGLK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   + +++      + I FN K +++ +  I      D+ V    +++ S   
Sbjct: 295 ISSL-IGSLNDEIDIEKEGNNLVIGFNPKLIIDALRVID-----DENVTIYFNNTKSPCV 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD+  +  Y+++PM
Sbjct: 349 I----------KDDAGSYIYLILPM 363


>gi|86609004|ref|YP_477766.1| DNA polymerase III subunit beta [Synechococcus sp. JA-2-3B'a(2-13)]
 gi|86557546|gb|ABD02503.1| DNA polymerase III, beta subunit [Synechococcus sp.
           JA-2-3B'a(2-13)]
          Length = 439

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 89/421 (21%), Positives = 181/421 (42%), Gaps = 52/421 (12%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIPAS 60
            T E++D+   L    R +  +  +PV  +VL++A+     + + A    + I     A 
Sbjct: 30  FTCEQADLSHHLTSVGRAVASRPALPVLANVLVEADAETQRVALTAFDLNLCIRSEFEAQ 89

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G  T+ A LL DIV +L  G        + +    V +      + ++S    E+P
Sbjct: 90  VRGSGRTTLPAKLLSDIVSRLPSGPVTLDASSQAQESAPVILMSAAGQYQVRSMSAEEYP 149

Query: 120 STKEE----------------EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163
           +  E                     + EL    L   + +T FA + +E +  L G+   
Sbjct: 150 TLPEISLRTADADGDFVGEESPTAQALELPIESLLQGIGQTLFAASGDETKQVLTGVHVK 209

Query: 164 I-NEEDLKLCAVATDGHRLAVAEVDIV------AQIAKMPSIIVPRKAVGEILRILSSKD 216
           +   +   L   ATDGHRLA+ +V+        A         +P + + E+ RIL ++ 
Sbjct: 210 LLAGDPPCLEFAATDGHRLAIVQVEAEGIPVASAHGEIGLDFTIPARTLREVERILGTQT 269

Query: 217 --SSVKVSLSESRIHLNIE--------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
             S+V++    S++   +            ++ RL++G++P+Y  +IP   ++++ +   
Sbjct: 270 AASTVELRFDRSQVQFVLPPRASKTQCQQRITSRLLEGQYPDYNRLIPKQFERQVTLERR 329

Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
            L ++++RV ++++ R   VK +LS+    L ++ + PD+G   ES+ V  +   +++ F
Sbjct: 330 PLIESLERVGVLAAQRNDIVKFNLSAATQTLRISTEAPDVGSGEESLPVQMSGPDLELAF 389

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N +YLL+ +    +      +V   L+ +                    +   Y++MP++
Sbjct: 390 NVRYLLDALRVFHTQ-----QVSLELNGATQPAI---------WKPLGAMRLCYLVMPVQ 435

Query: 385 I 385
           +
Sbjct: 436 L 436


>gi|229818504|ref|YP_002880030.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333]
 gi|229564417|gb|ACQ78268.1| DNA polymerase III, beta subunit [Beutenbergia cavernae DSM 12333]
          Length = 378

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 86/390 (22%), Positives = 164/390 (42%), Gaps = 21/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK  V+R  + + +    R +  + +IPV   V ++A+  G L + +   E+     I A
Sbjct: 1   MKFRVDRDVLADAVTWTARTLPTRPSIPVLAGVRIEADPQGALRLSSFDYEVSALSEIAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G++ VS  LL +I R L              GT V ++ G S F L + P  ++P
Sbjct: 61  DVPDAGTVLVSGRLLAEISRALPGKP----VDVELDGTRVVLTCGSSRFTLLTMPLDDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S        S  + +  L   V +   A + +E    L G+   I  +  KL  +ATD +
Sbjct: 117 SLPAMPPA-SGTVDAGTLAEAVAQVTIAASRDETLPLLTGVRVEIEGD--KLTLLATDRY 173

Query: 180 RLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSL----SESRIHLNIES 234
           RLA+ E+           + +V  + + E+ + L+S   +V +SL     +  +      
Sbjct: 174 RLAMRELSWNPASPGLEATALVRARTLSEVAKSLTSA-GAVSISLPNGDGKDLVGFEAGG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              +  L++G++P  + + P +       +   L +A  RVS+++  R   ++L+ S  +
Sbjct: 233 RRTTSLLVEGDYPPVRRLFPEATTSHAVASTNELVEAARRVSLVA-ERNTPIRLTFSEGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +A E++       P+   FN  YLL+ +  + +     +          
Sbjct: 292 VVLEAGQGDDAQASEAIESTLTGEPITTAFNPGYLLDGLGVVGT-----EFTRLSFTHGT 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               + G+ K   ++ D  V   Y++ P+R
Sbjct: 347 KPAVLTGQPKLEDDDADRDV-FRYLIQPIR 375


>gi|189485007|ref|YP_001955948.1| DNA polymerase III beta subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
 gi|170286966|dbj|BAG13487.1| DNA polymerase III beta subunit [uncultured Termite group 1
           bacterium phylotype Rs-D17]
          Length = 373

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 108/392 (27%), Positives = 195/392 (49%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  E+ +++  +     +   KNT+P   ++L +A    +++ ++  EI +   I   
Sbjct: 1   MKVICEKEELMRGIQMVSPVTPSKNTLPALSNILFEAERDKIKLSSTDLEIAVQCYIKGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G IT+ +    +I+++L    +I    +     ++NI  G S F L    ++E+P 
Sbjct: 61  ITEDGGITIPSKRFANIIKELSTDDEIEIKADE--TNQINIKSGKSKFNLMGISKTEYPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +F +   +  +++++  FA + +  RY LNGI+F +   D KL  VATDG R
Sbjct: 119 IPEPPKNNNFTIKRGIFASMLKKIVFAASRDSQRYVLNGIYFIL--GDSKLTMVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK--DSSVKVSLSESRIHLNIESLSMS 238
           LA A+ +I  Q       IVP KAV +ILR+L S      +++ +S++RI   I+ +++ 
Sbjct: 177 LAYAKTNIT-QAEVKGKAIVPTKAVNDILRLLYSDINSEDMRIGISDNRISAEIDDITLL 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI-----MSSVRIQAVKLSLSSD 293
             LI+G FPNY+ VIP  +D ++++N  N   AV ++++     +SS R  AVK   S D
Sbjct: 236 STLIEGVFPNYEQVIPKKSDLKIKLNVKNTLTAVKQMALLTDNHLSSDRSSAVKFYFSQD 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L ++  +  +G     + + Y   P +I FN  ++ EI  +I      +   +F   +S
Sbjct: 296 LLKISASSAGIGSGETDLEIEYKNDPAEINFNPDFIKEIFQSID-----EYSAIFEFTNS 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   I  +  +         N   V+MPMR+
Sbjct: 351 LNPAVIYPETDE---------NYLCVVMPMRV 373


>gi|124004099|ref|ZP_01688946.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134]
 gi|123990678|gb|EAY30158.1| DNA polymerase III, beta subunit [Microscilla marina ATCC 23134]
          Length = 376

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 177/387 (45%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V  + +   L     +I     +P+  + L    DG L   AS  +  IT  I   
Sbjct: 1   MKFSVSSALLQRQLSAISGVIMSSPVVPILENFLFVLEDGKLIASASDLQTSITTEIEVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A +L D ++ L +        E      V I+    ++ L      EFP 
Sbjct: 61  TQDTGSVAVPAKILLDTLKSLPEQPVTFSIDEEHKS--VEITSNTGHYKLAGENADEFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +   +  L+S +L   +  T FA + +E+R  + GI+    E+      VATDGHR
Sbjct: 119 IAQADSKLNIALSSDILGKAIGNTIFATSNDELRPAMTGIYIQFKED--HTLFVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   + + V       ++I+P+K++G +   L +    V    S+S    + + + M  R
Sbjct: 177 LIRYKREDVVGGGDPMTMIIPKKSLGLLRSTLPNDPVEVHAEFSDSNAFFSFDDIKMVCR 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCMTV 299
           LID  FP+Y+N IP  N   L ++  +L  ++ R++I ++     ++L ++ +  L +  
Sbjct: 237 LIDERFPDYENAIPTDNPNVLTIDRVSLLNSLKRLAIYANKSTNQIRLKMTAAGTLQIFA 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++ D   +A E++   Y    ++I FN K+++E++ NI++      E+   + + N +  
Sbjct: 297 EDLDFSNEANEALACEYQGDDLEIGFNAKFVIEMLSNITAK-----EIKIEMSTPNKAGI 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++  +      K +  +   ++MP+ +
Sbjct: 352 LKPTE------KIDNGDILMLVMPVML 372


>gi|313205876|ref|YP_004045053.1| DNA polymerase iii, beta subunit [Riemerella anatipestifer DSM
           15868]
 gi|312445192|gb|ADQ81547.1| DNA polymerase III, beta subunit [Riemerella anatipestifer DSM
           15868]
 gi|315022188|gb|EFT35216.1| DNA polymerase III beta subunit [Riemerella anatipestifer RA-YM]
 gi|325336683|gb|ADZ12957.1| DNA polymerase III, beta subunit [Riemerella anatipestifer RA-GD]
          Length = 376

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 170/386 (44%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S++ + L     +I    + P+  + L + ++  L+I +S  E  +  ++   
Sbjct: 1   MKFIVASSELQKALQVVSGVISSSQSRPILENYLFELDNQNLKITSSDGETTLVTSLEVM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPESEF 118
            +  G I V A    ++++   +       KE  NE+G  + I     N+ +      ++
Sbjct: 61  SEDQGKIAVPAKTFQELIKTFGEQPLTFTVKESANEMGALLEILDDRDNYEVALDNAEDY 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +   S  + S VL   +  T FA + + +R  + G+ F   E +     V+TD 
Sbjct: 121 PELPEFDASQSVTIPSGVLAEALVNTLFATSNDTLRPVMTGVLFQFGENEANF--VSTDS 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL V +     + ++    I+P+K +     IL++ +  V +  +E+       +    
Sbjct: 179 HRLVVYKRK-DIKNSEPIEFIMPKKPLSIFKNILANTEEEVVIEFNENMAKFTFGNHIWI 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY  VIP  N   L VN   L  ++ R SI+S+     V+  LS + L + 
Sbjct: 238 CRLIDGKYPNYSAVIPQENPNLLTVNRNLLLSSIRRASILSNKSTNQVRFKLSGNILHLH 297

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ +   KA   +   Y    ++I F+ K+L E++  +SS     D+V+ R+   N   
Sbjct: 298 AEDTEFANKADMQIPCDYKGEDINIGFSSKFLTEMLSVLSS-----DDVLMRMSQPNRPG 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +   D       D   +   + MP+
Sbjct: 353 ILEPID-----GLDENEHILMLSMPV 373


>gi|297570054|ref|YP_003691398.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
 gi|296925969|gb|ADH86779.1| DNA polymerase III, beta subunit [Desulfurivibrio alkaliphilus
           AHT2]
          Length = 376

 Score =  289 bits (741), Expect = 4e-76,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 190/390 (48%), Gaps = 25/390 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V R D L  L     I  +K T+ V  ++LL+++   L + A+  E+ I   IPA + 
Sbjct: 5   FNVSRLDFLTALAALQNITGKKGTLAVLANILLESDQEGLVMTATDLEVGIRCRIPAEIL 64

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             GS+T+ A  L+++V+   +  +     E +  + V IS   S+  L      EFPS  
Sbjct: 65  SPGSVTLPARKLFELVK---ESEEKHLHLEEQENSWVKISAESSDCRLSGISADEFPSFP 121

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATDGH 179
                    + ++++ +L+++T +++A E E  + L GI     I +E   L  V++DGH
Sbjct: 122 PYREDNLVAIPTALMTDLIDKTIYSVAHEGENNFNLAGILLEKEILDEGHFLRMVSSDGH 181

Query: 180 RLAVAEVDIVAQIAKMPS---IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           RL++ E  +   ++ +     I++P+K + EI ++   ++ +V + L E +  L     +
Sbjct: 182 RLSMMEGKVETDLSSLEMDRVILIPKKGIQEIRKLC-DEEETVLLGLEEKQAVLKAGGYT 240

Query: 237 MSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           + VRL+ G+FP+Y+ +I   N  K + ++   +  ++ RV+I +  R  AV   + +DK+
Sbjct: 241 LVVRLMSGDFPDYKGIIQVINKAKHIGIDRRKMMHSLKRVNIFTEDRYNAVNFIIENDKI 300

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  N D G A E +   Y    M+I FN KY  E +  + S++V        ++S  S
Sbjct: 301 TLSSQNMDYGSAREEVPAGYQGESMEIGFNGKYFYEALQVMDSEKVKA-----YINSEES 355

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++G         D       V+MPM++
Sbjct: 356 PCLLQG---------DKDPGYLSVIMPMKL 376


>gi|320535592|ref|ZP_08035689.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421]
 gi|320147555|gb|EFW39074.1| DNA polymerase III, beta subunit [Treponema phagedenis F0421]
          Length = 367

 Score =  289 bits (741), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 104/385 (27%), Positives = 184/385 (47%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T ++   L+ L  A  II  K  I +  +VLL A +G L +KA+  ++     IP  
Sbjct: 1   MKFTFDKDVFLKELAIAQEIISNKTAISILSNVLLTAKEGSLILKATDIKVNFETKIPVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       ++  L  G       E +    +      + F L++  +++FP 
Sbjct: 61  IQEEGSTTVFCDKFVSVISSLPQGEI--EITEKDQKLIITSVAKKAKFQLRTISDNDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E + +  FE+ +   K ++E+T F+++ +E RY++NG++     E+  L  VATDG R
Sbjct: 119 FSEPDNIQFFEINTKDFKEMIEQTVFSVSDDETRYFMNGVYMEKKNEN--LIFVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E +    I     II+P K +  I R  +  + S+ + + E  I  N  S   S  
Sbjct: 177 LAYIEKNFGITIPDFKGIIIPPKILSIINR-RTQNEGSIAIGVGEKNIFFNFGSYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY  VIP + DK   +  + L  A+ RV+++   + + +  +L+S  L ++ +
Sbjct: 236 LIDGQFPNYDKVIPENQDKSFEIEKSELTDALKRVALLVEQKTRRIFFNLNSGSLIISSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G+A E +   Y    + +  NY Y+ E +  I+S     D +         ++ +R
Sbjct: 296 ENELGQAKEEIPCQYEGDEIVMALNYLYVEEPLKVINS-----DRIKIEFTDPMRAITLR 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +            + F+++MPM+I
Sbjct: 351 AE---------PNKDFFHIIMPMQI 366


>gi|323141436|ref|ZP_08076326.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT
           12067]
 gi|322414092|gb|EFY04921.1| DNA polymerase III, beta subunit [Phascolarctobacterium sp. YIT
           12067]
          Length = 369

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 108/387 (27%), Positives = 200/387 (51%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I+   + + + +    R I  K + P+   + + A D  LEI+A    + I+  I A 
Sbjct: 1   MIISCNTNSLNKAIQTVQRAIISKPSTPIFSGIHVIAADNKLEIQAMDLNMAISCTIDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I VSA    D++RKL   A+     +NE    + +S G S + L    E ++P 
Sbjct: 61  ISESGEIVVSAKHFADLIRKLP--AESLTISKNEEKHSIKVSSGKSEYQLFLMNEDDYPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +  L   ++K L+++T F+ +T+E R    GI      +D K+  V T+ HR
Sbjct: 119 FPTFDADRTIALDDGMIKELIKKTIFSCSTDEARPLFTGILVE--AKDGKITFVGTNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+  +       +  S+I+P K +GEI R L+ +    V +SL  ++I + I+++ +  
Sbjct: 177 LAIKSLPYEGN--EELSMIIPSKVLGEISRNLTGEVPQQVLISLLNNQIMVVIDNIVIVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G+FP+Y+ VIP       +VN   L  AV+RV++ S+      +K+S+++D++ +T
Sbjct: 235 RLIEGQFPDYRRVIPPKFALTSKVNIKELAGAVERVALFSTDGDYSIIKMSVAADEITIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD+G  +E ++      P+++ FN KY+L+I+ N+ +     +E V  +++S S V 
Sbjct: 295 SSSPDVGTGLEVVSCQTIGDPLNVAFNAKYILDILKNLEA-----EEAVLSMNTSLSPVC 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D+          +  Y++ P+R+
Sbjct: 350 VTCADEP---------DYTYIVTPVRV 367


>gi|261403878|ref|YP_003240119.1| DNA polymerase III subunit beta [Paenibacillus sp. Y412MC10]
 gi|261280341|gb|ACX62312.1| DNA polymerase III, beta subunit [Paenibacillus sp. Y412MC10]
          Length = 380

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 189/396 (47%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ ++ + E + H  + I  + TIP+   + L      + + AS  +I I   IPA 
Sbjct: 1   MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL         KEN    +  IS G +   +  
Sbjct: 61  DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  L   +LKN++++T F+++T E    L G+ + +N+ +LK  
Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKF- 176

Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             ATD HRLA     +  A      ++++  K + E+ +I+  +++ V + ++++++   
Sbjct: 177 -TATDRHRLATRSAHLEGADGISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289
           I+ +    R++DG +P+   +IP S+  EL ++   L +++DR  ++S      + L  +
Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +    + ++  + ++GK  E ++ + +   P+ I FN KY+L+++  + S     ++++ 
Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVES-----EQLMI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D              Y+++P R
Sbjct: 351 AFMGVMSPIILKPLDDSKSQ---------YIILPYR 377


>gi|225181146|ref|ZP_03734592.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1]
 gi|225168115|gb|EEG76920.1| DNA polymerase III, beta subunit [Dethiobacter alkaliphilus AHT 1]
          Length = 367

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 180/388 (46%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TV ++ + E L    +    K+T+PV   +L Q++   + + A+  E+ I  + P  
Sbjct: 1   MRLTVPKALLAEHLQITAKAAPPKSTMPVLEGILFQSDGQTMTLTATNLELGIRTSFPVP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + A    +I+RKL          E    TE  I  G S F L      E+P+
Sbjct: 61  DQEKGEVVLPAKA-VEIIRKLPGDTVSLTVNEENFLTE--IKSGQSEFQLYGLSTEEYPA 117

Query: 121 TKEEEYV---YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
             +       Y+ E+ +   +  + +T FA + +E +    GI F + +  L L   ++D
Sbjct: 118 FADLSADSGQYACEIKAGEFRRALRQTLFAASQDEGKPAFTGIMFTLKDNTLTLS--SSD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             RLA     +  Q A     +VP K + E++RIL++ + SV+++++++++ +  +++ +
Sbjct: 176 TFRLATTSCRVQNQGADGV-FLVPAKNLQEVIRILTNDEDSVQLAVADNQLLITCKNIKL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           S RL+D  FPN   VIP        V+  +   AV+R S++S      V+LS+  + L +
Sbjct: 235 SSRLLDENFPNIDRVIPREFSGRATVDVADFLHAVERASLLSEGVNHVVRLSIGEEGLVI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              +   GK  E + V  +   ++I  N +++L+++          D+ +  L ++N   
Sbjct: 295 RASSK-FGKTQEHVPVELSGEGLEISLNSRFILDMLKVHEG-----DQCILELTNANKPC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +R                 Y+++P++I
Sbjct: 349 ILRD---------SLYQEYLYLVLPIKI 367


>gi|150005411|ref|YP_001300155.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482]
 gi|254884284|ref|ZP_05256994.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA]
 gi|294777189|ref|ZP_06742646.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510]
 gi|319640630|ref|ZP_07995347.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A]
 gi|149933835|gb|ABR40533.1| DNA polymerase III, beta chain [Bacteroides vulgatus ATCC 8482]
 gi|254837077|gb|EET17386.1| DNA polymerase subunit III [Bacteroides sp. 4_3_47FAA]
 gi|294449058|gb|EFG17601.1| DNA polymerase III, beta subunit [Bacteroides vulgatus PC510]
 gi|317387751|gb|EFV68613.1| DNA polymerase subunit III [Bacteroides sp. 3_1_40A]
          Length = 374

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 179/372 (48%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ ++   
Sbjct: 1   MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  + + ++++ +      F  N    E+ + + +  + L      E+P
Sbjct: 61  ESDGDGRFAVSSKTILEALKEIPEQP--LTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                        + + V+   + R+ FA A +E+R  +NGI+F I  ED+    VA+DG
Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     VA   +  + I+P+K    +  +L  +   V++   +      +E+ SM 
Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +  ++   L  A+ RVS+ SS     +KL LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMMLISALRRVSVFSSQASSLIKLRLSENQIQIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+      E++F L   + + 
Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQ-----EILFELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++ K +
Sbjct: 351 VIVPVEQEEKED 362


>gi|160878164|ref|YP_001557132.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg]
 gi|160426830|gb|ABX40393.1| DNA polymerase III, beta subunit [Clostridium phytofermentans ISDg]
          Length = 370

 Score =  289 bits (740), Expect = 5e-76,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 185/385 (48%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  +++++L  +  A + +  K+T+P+   ++++  +  +++ ++  EI I   +  S
Sbjct: 1   MKIACQKNELLNSVNIALKAVSSKSTMPILECIVIEVQNDTIKLISNDMEIGIETIVKGS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ ++A +  +I+RKL D        E +      I+   + F +      EFP 
Sbjct: 61  IISNGSVAINAKVFSEIIRKLPDNEV---NVETDEKFMTTITCEKAKFTIAGKSAEEFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   + EL+   LK ++ +T F+++  E    + G  F IN  +L++  V+ DGHR
Sbjct: 118 LPTIEKKEAIELSQFTLKEVIRQTVFSISDNESNKIMTGELFEINGNELRV--VSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V++    A    I+VP K + E+ +ILS +    V +  ++  +    +   +  
Sbjct: 176 ISIRKVELKNSYA-PKKILVPGKTLQEVSKILSGEISDEVFIYYTDRHVLFVFDDTLVLS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++++N       +DR +++      + + + +   KL + 
Sbjct: 235 RLIEGEYYKIDQMLSGDYETKVKINKKEFLSCIDRATLLIKETEKKPIIVGIEDKKLELK 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++      + I FN K+L++ +  I      D+EV   L +  +  F
Sbjct: 295 I-NTSIGTMDEDIDIEKEGKDILIGFNPKFLIDALRVID-----DEEVEIYLINPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I+ K++          +  Y+++P+
Sbjct: 349 IKDKEE----------SYIYLILPV 363


>gi|329925046|ref|ZP_08279990.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5]
 gi|328940165|gb|EGG36497.1| DNA polymerase III, beta subunit [Paenibacillus sp. HGF5]
          Length = 380

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 189/396 (47%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ ++ + E + H  + I  + TIP+   + L      + + AS  +I I   IPA 
Sbjct: 1   MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPAE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL         KEN    +  IS G +   +  
Sbjct: 61  DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKEN---FQTFISSGATEIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  L   +LKN++++T F+++T E    L G+ + +N+ +LK  
Sbjct: 118 LDPEEFPVLPNIEGSQTVSLPGDLLKNMIKQTVFSISTHETTPILTGVLWSLNDNELKF- 176

Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             ATD HRLA     +  A      ++++  K + E+ +I+  +++ V + ++++++   
Sbjct: 177 -TATDRHRLATRSAHLEGADGITFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289
           I+ +    R++DG +P+   +IP S+  EL ++   L +++DR  ++S      + L  +
Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +    + ++  + ++GK  E ++ + +   P+ I FN KY+L+++  + S     ++++ 
Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVES-----EQLMI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D              Y+++P R
Sbjct: 351 AFMGVMSPIILKPLDDSKSQ---------YIILPYR 377


>gi|237727133|ref|ZP_04557614.1| DNA polymerase subunit III [Bacteroides sp. D4]
 gi|265750417|ref|ZP_06086480.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA]
 gi|229433989|gb|EEO44066.1| DNA polymerase subunit III [Bacteroides dorei 5_1_36/D4]
 gi|263237313|gb|EEZ22763.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_33FAA]
          Length = 374

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 178/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ ++   
Sbjct: 1   MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLSLTASDSETTLSTSLEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  + + ++++ +      F  N    E+ + + +  + L      E+P
Sbjct: 61  ESDGDGRFAVSSKTILEALKEIPEQP--LTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                        + + V+   + R+ FA A +E+R  +NGI+F I  ED+    VA+DG
Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     VA   +  + I+P+K    +  +L  +   V++   +      +E+ SM 
Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +  ++   L  A+ RVS+ SS     +KL LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+      E++F L   + + 
Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQ-----EILFELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPVEQEENED 362


>gi|310657318|ref|YP_003935039.1| DNA polymerase III subunit beta [Clostridium sticklandii DSM 519]
 gi|308824096|emb|CBH20134.1| DNA polymerase III subunit beta [Clostridium sticklandii]
          Length = 363

 Score =  289 bits (740), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 181/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITV ++++   +    + +  KNTI +   +L +  +G L + ++  EI +   I A 
Sbjct: 1   MKITVNQNELQSAINMTLKGVSNKNTIEILKGILFETYEGKLMLTSNNLEIGVQTVIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + + A ++ DIVRKL          E  +   V IS     F ++ F   +FP 
Sbjct: 61  IQREGKVVIDAKIISDIVRKLPSSDVCLDVDETHI---VKISSTSLEFNIKGFSGEDFPI 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E  Y  E++S + K +V +T FA++ +E +  L G         + +  VA DG R
Sbjct: 118 PVSIEENYYKEISSDIFKEMVRKTSFAVSLDETKPLLMGELIEFKNNSINM--VAIDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  +           IIVP K + +I R++      +K+   E      I    ++ R
Sbjct: 176 LAIKYIK-DDNFVTDSKIIVPGKTLVDISRMIPPSVDKIKLGFDEKHASFIIGETILTTR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GEF NY  +IP     +L+++  +   A+DR  +++  +   +K+ +S D L ++  
Sbjct: 235 LLEGEFINYSQIIPKEFSTKLKIHTKDFLYALDRACLVA--KNNLIKIDISDDNLKISSK 292

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N ++G   E++ +      ++I FN KY ++ +  I      ++ +   L+++ S   ++
Sbjct: 293 NDEIGNLEENIFIELEGSNLEIAFNAKYFMDALKTID-----EEYISLELNTNVSPCILK 347

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D DS           Y+L+P+RI
Sbjct: 348 PYDDDS---------YTYLLLPVRI 363


>gi|320532812|ref|ZP_08033589.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171
           str. F0337]
 gi|320134963|gb|EFW27134.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 171
           str. F0337]
          Length = 376

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 155/389 (39%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + E +    R +  +  +PV   V L+A    L + +   E+     + A 
Sbjct: 1   MKLRVDRDILAEAVTWTARSVPARPPVPVLAGVRLEAKGSSLVLASFDYEVSAHCEVAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + VS  LL DI + L +       +    G +V +S G + F L +    ++P+
Sbjct: 61  IEEDGVVLVSGRLLADIAKALPNKPVDLEVE----GNKVAVSCGSARFSLAAMAADDYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 V    + +  L   V +   A + ++    L  +   +    L L  +ATD +R
Sbjct: 117 LPVMPTVAG-TIDAHDLARAVGQVSIAASRDDTLPLLTSVQIEVEGSSLVL--MATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDS----SVKVSLSESRIHLNIESL 235
           LA+ E+       ++  + ++  + + ++ + L+S           S + S I       
Sbjct: 174 LAMRELTWSPSNTELSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGR 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +  L DG++P  + + P S      V    L  AV RVS+++  R   + +S +   L
Sbjct: 234 RTTSLLTDGDYPPVRRLFPESTSIHATVGTDELMAAVRRVSLVA-DRSTPIHMSFTQGNL 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D  +A E +  +     +   FN  YLL+ +  ++        V      ++ 
Sbjct: 293 ELDAGQGDDAQATEQLVAHLEGDDISTAFNPGYLLDGLGALN-----QPYVRLDFTHASK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + G D           +  Y+LMP+R
Sbjct: 348 PAVLTGMDS---IGGTEDSSFRYLLMPIR 373


>gi|330470834|ref|YP_004408577.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
 gi|328813805|gb|AEB47977.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
          Length = 373

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 84/387 (21%), Positives = 170/387 (43%), Gaps = 24/387 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           ER  + E +    + +  + ++PV   V+L+  DG L++     E+     +    D  G
Sbjct: 2   ERDALAEAVAWTAKSLPNRPSVPVLAGVMLRVTDGTLQVSGFDYEVSSQVTVEVQGDADG 61

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125
           +  VS  LL +I + L             +G  + +  G + F L + P  ++P+  E  
Sbjct: 62  AALVSGRLLAEITKALPGKP----VDIAAVGAHLELVCGSARFTLPTMPVEDYPTLPEMP 117

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
                 + ++     V +   A + +E    + G+   ++     L  +ATD +RLA+ E
Sbjct: 118 ESAG-TIDAAAFAAAVAQVAVAASRDETLPMMTGVRVELSGG--TLSMLATDRYRLALRE 174

Query: 186 VDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESLSMSV 239
           ++      ++  + +VP + + +  + L      V ++LS     E  I  +  +   + 
Sbjct: 175 MEWNPDDPEISINALVPARTLNDTAKALGPVGGQVTMALSQGAAGEGMIGFSGGTRRTTS 234

Query: 240 RLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           RL+DG  +P  +++ P S++ E RV  + L + V RV++++  R   V LS S+D L + 
Sbjct: 235 RLLDGANYPPVRSLFPASHNAEARVPVSTLIEVVKRVALVA-ERTTPVLLSFSADGLVVE 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               +  +A E+M   +   P+ I FN +YL++ + N+ +        V +   +     
Sbjct: 294 AGGTEEARASEAMEATFTGEPLTIGFNPQYLIDGLANLGAQ-----FAVLQFVDAFKPAV 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I    +D +          Y++MP+R+
Sbjct: 349 ISPAGEDGELIG----GYRYLIMPIRV 371


>gi|297564208|ref|YP_003683181.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
 gi|296848657|gb|ADH70675.1| DNA polymerase III, beta subunit [Nocardiopsis dassonvillei subsp.
           dassonvillei DSM 43111]
          Length = 384

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 81/400 (20%), Positives = 160/400 (40%), Gaps = 32/400 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+ V+R    E +    R +  +  +PV   + ++   +   L +     E+    ++ 
Sbjct: 1   MKLRVDRDAFAEAVAWTARALPTRPAVPVLSGIRMELSPDGASLHLSGFDYEVSTRASVD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +  G+  V   LL +IVR L  G+       +  G ++ I  G + F L + P  ++
Sbjct: 61  VLSEEPGAALVPGRLLAEIVRNLPSGSVHI----DSDGPKLRIVGGAARFTLITMPLEDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+           +A+      V +   A + ++    L G++   + + L L  VATD 
Sbjct: 117 PTLPGMPGRIG-SVAADAFAAAVRQVAPAASRDDTLPMLTGVYLDFSGDTLSL--VATDR 173

Query: 179 HRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRIL------------SSKDSSVKVSLSE 225
           +R+AV E+    +      + +VP + + + +R L            +S    V +S  E
Sbjct: 174 YRIAVRELWWSPEDQGLDAAALVPARTLSDTVRGLLTKSNVDIALSTASGGEGVSLSPGE 233

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             I         + RLID EF  Y    P        V  T L +AV RV++++  R   
Sbjct: 234 GMIGFENGERRTTTRLIDSEFVKYAAWFPKEFSARAEVAVTPLAEAVKRVALVA-DRNTP 292

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           ++L+ S  ++ +   + +  +A+E++ V Y   P+ + F   YL++ +  + +     D 
Sbjct: 293 LRLAFSEGEVVLEAGSGEDAQAVEAIEVGYEGEPLRLAFRPDYLMDGLAGVET-----DT 347

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                              D    +    +  Y++ P+R+
Sbjct: 348 AYLNFTEPTKPAVFT----DVPAKEGENPSFRYLVQPLRV 383


>gi|323341101|ref|ZP_08081349.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis
           ATCC 25644]
 gi|323091522|gb|EFZ34146.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus ruminis
           ATCC 25644]
          Length = 379

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 86/395 (21%), Positives = 171/395 (43%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK +V R+  L+ L  A   I  K T+ +   V L  +   L I  S  +I I   +   
Sbjct: 1   MKFSVHRAAFLQYLNTAQTAISGKTTLEILTGVKLNLSADALTITGSNSDISIETILSIA 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                 +++  GS+ + A    +IV++L +    +F        +  I  G S F +   
Sbjct: 61  DEDAQLTIEEPGSVVLPARFFGEIVKRLPED---TFTLTVNDRFQTTIVSGASEFTINGV 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E +     ++   +LK ++++T  A + +E R  L GI   INE +L   A
Sbjct: 118 ESEAYPHLPEIDSKDQLKIPGDLLKQIIDQTVIATSKQENRPMLTGIHLTINESELT--A 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+  +  +         I+VP  ++ ++ ++L      V++ +SE+++   ++
Sbjct: 176 VATDSHRLSQRKATLENNATGNYDILVPGDSLSKLSKMLGETQEDVELQISENQVLFILD 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS 292
             S   RL++G++PN   +IP S    + ++  +L ++++R S++S       V+L +  
Sbjct: 236 HTSFYSRLLEGQYPNTAQLIPNSASTTVEIDAHSLLRSIERASLLSHEGHNNVVRLVIDP 295

Query: 293 --DKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
             +   +  ++P++G   E ++        ++I FN  Y+ + +           EV   
Sbjct: 296 AANTATIFGNSPEIGNVEEVLDFNQIEGDELEISFNPDYMKDALHAFGQS-----EVKLN 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                    I   + D         +   ++ P+R
Sbjct: 351 FTLPLRPFTIVPSEDDG--------SFIQLITPVR 377


>gi|160893410|ref|ZP_02074195.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50]
 gi|156864805|gb|EDO58236.1| hypothetical protein CLOL250_00959 [Clostridium sp. L2-50]
          Length = 363

 Score =  289 bits (739), Expect = 6e-76,   Method: Composition-based stats.
 Identities = 86/379 (22%), Positives = 176/379 (46%), Gaps = 24/379 (6%)

Query: 7   RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS 66
           +  +++ + +  + +  K T P+   + ++A +G +++ A+  EI I   +  +V   G 
Sbjct: 2   KGKLMQGISNVSKAVSTKTTHPILSCIFIEAENGNIKLTANDMEIGIESYVEGTVIEEGK 61

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           + + A LL DIVRKL D        E+    +  I    S F +      +F S    E 
Sbjct: 62  VAIEAKLLSDIVRKLPDSEIHMETNED---FKTTIKCEKSLFTIAGKSGEDFSSLPVVEK 118

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                ++   L+ ++ +T F+++  E    + G  F ++    +L  VA DGHR+A+  V
Sbjct: 119 SKFITISQFTLREIINQTIFSISDSEYNNVMTGELFEVSNN--RLRVVAIDGHRIAIRNV 176

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           ++  +   +  +IVP KA+  I +I+S   D  V +  +++ I    +   +  RL++GE
Sbjct: 177 ELKNESEDV-KVIVPGKALSYISKIVSGGVDDDVNIYFADNNILFEFDRTKVVSRLVEGE 235

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTVDNPDM 304
           F    N++      +  +N       +DR S++      + +KL++  + L + +D+  +
Sbjct: 236 FFRIDNMLNVDYQIKFTINKREFLDCLDRSSLLIKESDKKPIKLTIEDNMLYLKIDSL-I 294

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDK 364
           G   E + ++     + I FN K+L++ I  I      DD++   ++++ S   I     
Sbjct: 295 GSMNEEIEIHKEGNNIIIGFNPKFLMDAIRAIE-----DDDITIYMNNTKSPCVI----- 344

Query: 365 DSKNNKDNKVNAFYVLMPM 383
                KD + +  Y+++PM
Sbjct: 345 -----KDEEESYIYLILPM 358


>gi|291541863|emb|CBL14973.1| DNA polymerase III, beta subunit [Ruminococcus bromii L2-63]
          Length = 368

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 100/386 (25%), Positives = 191/386 (49%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+  RSD+   + +  R +  K +IP    VL++A    L I     EI IT  I A+
Sbjct: 1   MKISCLRSDLATAISNVSRAVSTKASIPALEGVLIKAYGNTLNISGYNLEIGITTDIEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I VSA L  DIVR+L +      F E +      I+ G  N+ +      E+P 
Sbjct: 61  IKEEGEIVVSAKLFLDIVRRLPEEIV---FIETDERMVTYIACGKVNYQIVGMSSVEYPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L + +L++++ +T +A++    +    G  + I  ED     +A DG+R
Sbjct: 118 LPSFEQTDRITLNAKILRDMIRQTVYAVSENTAKPIYTGSLYEI--EDGVFKIIAIDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+   ++ ++       +VP K   E+L++L+  + + ++ + +  I   I++  +  R
Sbjct: 176 MAIRSENVDSESKNRF--VVPGKTQHEVLKLLTDDEENTEIIIGQRHITFKIKNYRIISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299
           LI+G F  Y++ IP     E+ +N   +  AV+R+S++++ RIQ  V+   S D++ ++ 
Sbjct: 234 LIEGTFIEYKSAIPKETKTEVVINTRTIIDAVERMSLLNNDRIQSPVRCIFSDDEIKLSC 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +  +G+A + ++V      ++I FN +YLL+ + N  +     DE+   L+ S +++ +
Sbjct: 294 TSA-VGRANDVISVPIIGESVEIGFNNRYLLDALKNADT-----DEIKLILNGSLTAMIV 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    DS            +++PMR+
Sbjct: 348 KPVKGDS---------YLSIVVPMRL 364


>gi|52840258|ref|YP_094057.1| DNA polymerase III beta chain [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|52627369|gb|AAU26110.1| DNA polymerase III beta chain [Legionella pneumophila subsp.
           pneumophila str. Philadelphia 1]
 gi|307608752|emb|CBW98134.1| DNA polymerase III, beta chain [Legionella pneumophila 130b]
          Length = 367

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 23/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +    
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 62  D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSITV A    DI+R L + A  S   +  L   V I    S F L + P   +PS
Sbjct: 63  KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+      +   + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A++             +++P+K V E+LR+L+   D  V ++  +S I L         
Sbjct: 178 MAISRYSC--NNIAQTKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP   DK + ++C +L++A+ R+ I++  + +AV L L   +L +  
Sbjct: 236 KLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +AIE+++       + I  N  YLL+++ + S     + ++   + ++ SS+ I
Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFS-----EGQIRLSMSNTESSILI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D         N  Y++MPM+I
Sbjct: 351 ESLVND---------NYQYIIMPMKI 367


>gi|292669294|ref|ZP_06602720.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia
           ATCC 43541]
 gi|292649135|gb|EFF67107.1| DNA-directed DNA polymerase III beta subunit [Selenomonas noxia
           ATCC 43541]
          Length = 380

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 98/397 (24%), Positives = 192/397 (48%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I++ ++D++  L    + +  K   P+   + + A +G LE++ +  E+     IPA 
Sbjct: 1   MNISLAKNDLISALQIVSKGLSTKPQTPILSGIYMTAKEGQLELQTTNYELGFILTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  +    L +  RKL    ++S   ++  G  V I  G + F L++   S+FP 
Sbjct: 61  IHNTGTAVLPGKYLTEFARKLP-AEEVSIDTDSADGLAV-IQSGAARFTLRTMEISDFPV 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVATD 177
               +    F +    L  LV+++ FA   EE    R    G    +  +++     AT+
Sbjct: 119 LHHMDGTLHFTIKDRTLARLVKKSAFACLREEQRDRRPIFTGCQLEVEGKEITF--AATN 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLS 236
            HRLAV    +     ++  +I+P K + E+ R +SS+  + + V+ S +++ ++  S+ 
Sbjct: 177 VHRLAVKSEQLEEDAGQIR-VIIPAKFLEEVTRTISSEVPADIHVTCSYNQVSMSSGSIY 235

Query: 237 MSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293
           M+ RLI+G FP+Y+ VIP   +   ++ ++  +   AVDR S+++ + +   VKLS +  
Sbjct: 236 MTARLIEGTFPDYRRVIPREENIRTKVTLDAASFASAVDRASLIARADQYNIVKLSFTQG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + ++ ++P++G+A E++        + I FN  YL++ + ++ SD  +       L  S
Sbjct: 296 LMRISSNSPEIGEAEETIPAEVTGDDVTIAFNASYLMDALKSLDSDTCI-----LSLQGS 350

Query: 354 N------SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N      S + IR         ++   N  YV+ P+R
Sbjct: 351 NEQGVNLSPMTIR---------EEADPNYIYVVTPVR 378


>gi|256419662|ref|YP_003120315.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588]
 gi|256034570|gb|ACU58114.1| DNA polymerase III, beta subunit [Chitinophaga pinensis DSM 2588]
          Length = 372

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 89/370 (24%), Positives = 164/370 (44%), Gaps = 11/370 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  S +L+ L     +I     +P+    L   +   L + A+  E  +   +   
Sbjct: 1   MKFIVSSSTLLKQLQQISGVINSNTVLPILEDFLFLIDKNELTVVATDLETVMKVKLEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G I + A +L D ++ L D         N     V I+  +  + +       FP 
Sbjct: 61  AKESGRICIPAKILMDSLKNLPDQPLTFHIDLNSYA--VEITSDNGKYKVMGENPENFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   SF ++++ L   + +T FA++ +++R  + G+FF +    L    VATD HR
Sbjct: 119 EPAADDTTSFTVSATALVTAINKTLFAVSNDDLRPAMTGVFFELTPTSLTF--VATDAHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L         +  K  + IVP+K +  +   L   DS +K++ S++   +  +   M  R
Sbjct: 177 LVKYVRT-GVECPKAETFIVPKKPLNLLKSALPDNDSEIKIAYSQNHFFVMHDGAQMICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  FP+Y+ VIP  N   L V  ++ + A+ RVS+ ++     V LS++  +L ++  
Sbjct: 236 LIDARFPDYKVVIPKDNPYRLTVAKSDFQNALKRVSVFANKSTNQVALSITGSELQLSAQ 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +  E M+  Y    M I FN K+L+E+++         DE+   L +   +  +
Sbjct: 296 DVDFSFEGNERMSCQYTGDDMQIAFNAKFLIEMLNAAEG-----DEITIELSTPTKAGIL 350

Query: 360 RGKDKDSKNN 369
           +  +K+   +
Sbjct: 351 KPSEKEENED 360


>gi|255310878|ref|ZP_05353448.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276]
 gi|255317178|ref|ZP_05358424.1| DNA polymerase III subunit beta [Chlamydia trachomatis 6276s]
 gi|255348439|ref|ZP_05380446.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70]
 gi|255502981|ref|ZP_05381371.1| DNA polymerase III subunit beta [Chlamydia trachomatis 70s]
 gi|255506651|ref|ZP_05382290.1| DNA polymerase III subunit beta [Chlamydia trachomatis D(s)2923]
 gi|301335548|ref|ZP_07223792.1| DNA polymerase III subunit beta [Chlamydia trachomatis L2tet1]
 gi|296434664|gb|ADH16842.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/150]
 gi|296436517|gb|ADH18687.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11222]
 gi|296438381|gb|ADH20534.1| DNA polymerase III subunit beta [Chlamydia trachomatis E/11023]
          Length = 366

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 1   MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|291455694|ref|ZP_06595084.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213]
 gi|291382622|gb|EFE90140.1| DNA polymerase III, beta subunit [Bifidobacterium breve DSM 20213]
          Length = 374

 Score =  289 bits (739), Expect = 7e-76,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 172/387 (44%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ + + P+   V L+A DG L+  A   EI     I A 
Sbjct: 1   MKVEIDTAALADAVAWTSRVIDARPSNPILAGVKLEAIDGTLQFSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS  V   LL DI + L+             G+ + I+ G S F LQ  P++E+P 
Sbjct: 61  VDEVGSALVLGKLLADITKSLRSEKTYLTTD----GSTLTITSGKSKFTLQLMPDAEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +     A + +   V +   A++ EE R  L G+     ++  K+   +TD  R
Sbjct: 117 LPVVPPMLGQVDAQTFV-QAVNQASVAVSREENRPVLTGVRMQFQDD--KVIMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237
           LA A      Q A + +I + R ++ + +     +  ++++         +         
Sbjct: 174 LARAAFTWTPQDANVDTITLVRGSLLKDVARSLDEHQNIRLDFDADNPTLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +       +  VN  +L  A+ RV++++  R   +++  +  +L +
Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVVNKQDLLDAISRVALVA-ERNAPIRMMFTGQELAL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D  +A E++++  +   + + FN  YL E +  I      +  V  ++ +    V
Sbjct: 293 SAGSADEAQANETLDIDMDGDEITVAFNPSYLKEGLSAI-----AEPFVRIKMTTPVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|239618231|ref|YP_002941553.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1]
 gi|239507062|gb|ACR80549.1| DNA polymerase III, beta subunit [Kosmotoga olearia TBF 19.5.1]
          Length = 367

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 182/388 (46%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAI-P 58
           M+ ++ R++ L  L      +  K   P+   +L + A D  LE+ A+  E  I   + P
Sbjct: 1   MRFSIPRNEFLTRLESVSTAVASKTVKPILSGILFRTAEDSKLELIATDLETSIKTYVQP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           + +   G   V A +L +I+R L DG     F++    T + I    S F L +    EF
Sbjct: 61  SEISGTGQFVVDAKVLLEIMRNLPDGKVFFEFQD----TNLVIRMEKSRFVLPTMSGEEF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +  +  +  E + + L+ +++R  F  A +E    LNG+++ +    L+L  VA DG
Sbjct: 117 PEVEPAQGGWELETSVTALEIMIDRVLFCAAKDEFMRNLNGVYWELEGGYLRL--VAADG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSM 237
            RLA+AE      +      ++  K++ ++   + ++    +K+    +R+    +   M
Sbjct: 175 FRLALAEEKTNQNLEDH--FLLTLKSMKDLQSSIKTAGSDDMKIVYDGTRVGFYFDGTEM 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             R+++ +FP+Y+ V+P +    +  N ++L  A+ R SI + +   ++K+ +  D + +
Sbjct: 233 VARVVEADFPDYKKVLPKAFKTRVVANTSSLSDAIRRASIAARLGSDSIKIEIKEDNMKL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              +PD G++ E + +  +   + I FN K+LLE    I +     +EV      SNS +
Sbjct: 293 IAKSPDHGESSEELEIKKDGEDLIIAFNPKFLLEATKKIDT-----EEVELNFVDSNSPL 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D +            Y++MP+R+
Sbjct: 348 QMNPVDVE---------GYLYIIMPIRL 366


>gi|271970493|ref|YP_003344689.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
 gi|270513668|gb|ACZ91946.1| DNA-directed DNA polymerase [Streptosporangium roseum DSM 43021]
          Length = 365

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 81/386 (20%), Positives = 160/386 (41%), Gaps = 23/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R  + + +    R +  +  +PV   +LL+A D  L + A   ++    +I A 
Sbjct: 1   MKFQVNRDVLADAVAWVARALPNRPALPVLSGLLLEAGDD-LVLSAFDYDVSARASIEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +   +L +I R L         +    G+E  ++ G + F L + P  +FP+
Sbjct: 60  VAEPGRVLIPGRILAEITRSLPAEP----VEIVTSGSEAVLTCGSAEFGLLTMPVEDFPT 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                          V  + V +   A + +E    L GI   I+ E   +   ATD +R
Sbjct: 116 LPSMPPKIGAVG-GGVFASAVGQVAPAASRDESLPMLTGIRIDISGE--TVAMAATDRYR 172

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A  E      +     + +VP + + E+ R L   +  V ++L +          S +V
Sbjct: 173 IAAREFGWRPEEPGAAAAAMVPARVLVEVARSLRGGE--VSMALGDGVAGFESVGRSTTV 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL+D +F +Y++ +         +       A+ RV++++  R  A++LS S  ++ +  
Sbjct: 231 RLLDEQFIDYRSRLSDDWSIRADLRVAPFIDAIKRVALVA-ERNTAIRLSFSQGQVLIQA 289

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
              D+G+  E M    +   + I F  ++LL+ +  + +     + V   ++S +    I
Sbjct: 290 GGGDIGRGTEVMEAELSGDGIQIAFQSQFLLDGLAGVET-----EFVRLNMESPSRPALI 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D+           Y++M +R+
Sbjct: 345 TEVPGDA------DPAFRYLVMSLRL 364


>gi|320531086|ref|ZP_08032115.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399]
 gi|320136668|gb|EFW28621.1| DNA polymerase III, beta subunit [Selenomonas artemidis F0399]
          Length = 380

 Score =  288 bits (738), Expect = 8e-76,   Method: Composition-based stats.
 Identities = 108/393 (27%), Positives = 194/393 (49%), Gaps = 24/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +SD+L  L    + +  K   P+   + L A DG LE++++  EI     IPA 
Sbjct: 1   MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+  +    L +  RKL  D   I    E+ LG    I+ G++ F L+     +FP
Sbjct: 61  VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLG---VITSGNARFTLRQMEVDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVAT 176
             +  +    F +   VL +LV+++ FA   EE    R    G    +   ++ L   AT
Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITL--AAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235
           + HRLAV    I +   ++  +++P K + E+ R ++S+  + +++  S ++I ++ E +
Sbjct: 176 NVHRLAVKSEHIESDAGQIR-VVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
            M+ RLI+G FP+Y  VIP   +   ++ +N  +   AV+R S++S + +   VKL    
Sbjct: 235 YMTSRLIEGSFPDYHRVIPRDENIRTKVTMNAADFAAAVERASLISRTDQYNIVKLEFED 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE-VVDDEVVFRLD 351
           + L +T ++PD+G+A E++       P  I FN  YLL+ + ++ SD  ++  +      
Sbjct: 295 NLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSDICILSLQAPNEQG 354

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + S + IR         ++   +  YV+ P+R
Sbjct: 355 QNLSPITIR---------EEADKDYIYVVTPVR 378


>gi|309388283|gb|ADO76163.1| DNA polymerase III, beta subunit [Halanaerobium praevalens DSM
           2228]
          Length = 370

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 78/384 (20%), Positives = 178/384 (46%), Gaps = 17/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + ++ + L    R + +  T+P+   + L  ++ +L +K++  E+ I   +   
Sbjct: 1   MKFSINQKELYKALNIVRRAVAKNQTLPILTGIFLSLDNNILTLKSTDLELGIKYDLKVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
             V GSI + A    +I+R+L +         N+   ++ I   +S F +  F   EFP+
Sbjct: 61  GQVNGSIVLPATQFLNIIRELPNQKI--EIDLNKDKWQLEIKCLNSLFKINGFDPDEFPN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   +F L +   K ++++   + + +E +  L G FF +  E +K+  V+T+ +R
Sbjct: 119 LPKVEDSANFSLPAKKFKEMIKKVRISTSKDETQPALTGAFFEVETEKVKM--VSTNTYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  E  +   +A+  ++I+P   + E+  +L + D SV++ +  +        + +  R
Sbjct: 177 LSYIEAPLKTSVAEKIAVILPGSTLQELNNLLEA-DESVEIEVDNNYARFTFAGIEVISR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP  ++ +   + + L  AV R S+++ +    + L      + +   
Sbjct: 236 LIEGKFPNYELVIPDESNSKFSADLSQLHGAVKRASLIAKLDANIITLLAEDGLMEINSA 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
               G A E + +        I  +  Y ++++  + +     +E+   +    + + ++
Sbjct: 296 EGSSGYAHEELKIEIEGPKQKINIDAGYFIDVLKVLDA-----EEINIEMIGPLNPLVVK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +        +      Y++MP+R
Sbjct: 351 SQ-------SEAGDKFIYLIMPVR 367


>gi|255535062|ref|YP_003095433.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium
           3519-10]
 gi|255341258|gb|ACU07371.1| DNA polymerase III beta subunit [Flavobacteriaceae bacterium
           3519-10]
          Length = 385

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 16/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V   ++ + L     +I    + P+  + L + ++  L+I AS  E  +  ++   
Sbjct: 10  MKFIVASGELQKALNTVSGVISSSQSRPILENYLFEIDENNLKITASDGETTLVTSLEVR 69

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118
            D  G   V A +  D V+   +       K+ E G    + I     NF +      ++
Sbjct: 70  SDDTGKFAVPAKIFQDFVKTYGEQPLTLSVKDAEDGNGSLLEILDEKDNFAVALDHAEDY 129

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +   S ++++ +L   +  T FA + + +R  + G+ F   E++     V+TD 
Sbjct: 130 PELPEFDASQSVKISAGILCEALTNTLFATSNDSLRPVMTGVLFQFKEDETNF--VSTDS 187

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL V +       A+    I+P+K +     IL++    V +  +E+       +    
Sbjct: 188 HRLVVYKRT-DLMNAEPIEFIMPKKPLAIFKNILANSSDDVTIEFNENMAKFTFGNNIWI 246

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG++PNY  VIP  N   L +N   L  ++ R SIMS+     V+  LS + L + 
Sbjct: 247 CRLIDGKYPNYSAVIPKENPNVLTINRNLLLSSIRRASIMSNKSTNQVRFKLSGNILHLH 306

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ +   KA   +   YN   ++I F+ K+L E++  +SS     D++  ++   N   
Sbjct: 307 AEDTEYANKADMQIPCDYNGEDINIGFSSKFLTEMLSVLSS-----DDITMKMSQPNRPG 361

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I   D       +   N   + MP+
Sbjct: 362 IIEPVD-----GLETDENILMLSMPV 382


>gi|167461552|ref|ZP_02326641.1| DNA polymerase III subunit beta [Paenibacillus larvae subsp. larvae
           BRL-230010]
 gi|322381373|ref|ZP_08055376.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
 gi|321154949|gb|EFX47220.1| DNA polymerase III subunit beta-like protein [Paenibacillus larvae
           subsp. larvae B-3650]
          Length = 380

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 186/396 (46%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T+ ++ + E + H  + I  K TIP+   + + A    + + AS  +I I    P  
Sbjct: 1   MKLTILKNYLTESIQHVSKAISSKTTIPILTGIKIDAATSGVTLTASDTDISIQSFTPNE 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            +          GS+ + A    +I+RKL          E     +  I  G S   +  
Sbjct: 61  NEEIAIIELHQPGSVVLPAKFFMEIIRKLPSQKI---EIEVRDHFQTIIRSGSSEIQIMG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               E+P   + E     ++ S +LK ++++T FA++T E    L G+ +H+   D KL 
Sbjct: 118 LDPEEYPLLPQLEESKMIQIPSDLLKTMIKQTSFAVSTNETTPILTGVLWHVQ--DGKLK 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            +A D HRLA  E+ +   +A+   +I++  + + E+ +IL  +++ + + +S++++   
Sbjct: 176 FIACDRHRLASREISLDLDVAQTFHNIVISGRTLNELSKILPDQNALIDILVSDNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLS- 289
           I S+    R++DG +P+   +IP S   EL VN   L  A+DR  ++S   +   VKL  
Sbjct: 236 INSILFYSRILDGTYPDTSKLIPQSFQTELIVNTKELADAIDRAYLLSREDKTNIVKLIM 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L  + + ++  + ++GK  E +++  +    + I FN KY+L+ +  + S     D +  
Sbjct: 296 LEDETIEISSSSSELGKVTEQLSLQSFKGERLRISFNSKYMLDALKVMDS-----DYIQI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +   + I+ +D+          N   +++P R
Sbjct: 351 GFTGAMQPIIIKPEDQ---------ANILQLILPYR 377


>gi|313894749|ref|ZP_07828310.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137
           str. F0430]
 gi|312976658|gb|EFR42112.1| DNA polymerase III, beta subunit [Selenomonas sp. oral taxon 137
           str. F0430]
          Length = 380

 Score =  288 bits (738), Expect = 9e-76,   Method: Composition-based stats.
 Identities = 108/393 (27%), Positives = 194/393 (49%), Gaps = 24/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT+ +SD+L  L    + +  K   P+   + L A DG LE++++  EI     IPA 
Sbjct: 1   MNITLGKSDLLTALQIVSKGLSTKPQTPILSGIYLSAKDGQLELQSTNYEIGFILTIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G+  +    L +  RKL  D   I    E+ LG    I+ G++ F L+     +FP
Sbjct: 61  VKTPGAAILPGKYLTEFTRKLPADEVSIDCISEDGLG---VITSGNARFTLRQMEVDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEI---RYYLNGIFFHINEEDLKLCAVAT 176
             +  +    F +   VL +LV+++ FA   EE    R    G    +   ++ L   AT
Sbjct: 118 KLQRMDGTLRFTIKDRVLAHLVKKSAFACMKEEQRDRRPVFTGCQLEVEGREITL--AAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESL 235
           + HRLAV    I +   ++  +++P K + E+ R ++S+  + +++  S ++I ++ E +
Sbjct: 176 NVHRLAVKSEHIESDAGQIR-VVIPAKFLEEVTRTITSEVPTDIEIVCSYNQISMSAEGI 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
            M+ RLI+G FP+Y  VIP   +   ++ +N  +   AV+R S++S + +   VKL    
Sbjct: 235 YMTSRLIEGSFPDYHRVIPRDENIRTKVTMNAGDFAAAVERASLISRTDQYNIVKLEFED 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE-VVDDEVVFRLD 351
           + L +T ++PD+G+A E++       P  I FN  YLL+ + ++ SD  ++  +      
Sbjct: 295 NLLHITSNSPDVGRAEETIEAEVEGDPAVIAFNASYLLDAMKSLDSDICILSLQAPNEQG 354

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + S + IR         ++   +  YV+ P+R
Sbjct: 355 QNLSPITIR---------EEADKDYIYVVTPVR 378


>gi|333030103|ref|ZP_08458164.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011]
 gi|332740700|gb|EGJ71182.1| DNA polymerase III, beta subunit [Bacteroides coprosuis DSM 18011]
          Length = 374

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/369 (26%), Positives = 173/369 (46%), Gaps = 13/369 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L Q  +G+L +  S  E  +  +I   
Sbjct: 1   MKFIVSSAALYSHLQAVSRVINSKNALPILDCFLFQLENGVLSVTVSDSETTMETSIDVI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G I ++A  L D ++++ +      F  +    EV +++ +  + L      E+P
Sbjct: 61  ECVTEGKIAIAAKTLLDALKEIPEQP--LTFSVDSSTLEVTVTYQNGQYSLMGQNADEYP 118

Query: 120 STKEEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +         F ++   L   + RT +A A +E+R  +NG++F I  ED+ +  VA+DG
Sbjct: 119 QSAALNNESVKFTMSVDTLLAGINRTVYATADDELRPVMNGVYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +V + A+     + I+P+K    +  IL  +   V++S  E      + +  M 
Sbjct: 177 HKLVRCQV-LDAKGNDRAAFILPKKPANLLKNILPKEQGEVEISFDERNAIFALGNYHMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  ++ V+  +   A+ RV+I SS     VKL L    + ++
Sbjct: 236 CRLIEGRYPNYNSVIPKDNPFKVTVDRVSFIGALRRVAIFSSQASSLVKLRLKDSSMNIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y    M I F   +L++I+ NISS     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEENLVCQYTGTDMSIGFKSTFLIDILSNISS-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDS 366
            I   +++ 
Sbjct: 351 VIIPVEQEE 359


>gi|304405888|ref|ZP_07387546.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus
           YK9]
 gi|304345131|gb|EFM10967.1| DNA polymerase III, beta subunit [Paenibacillus curdlanolyticus
           YK9]
          Length = 380

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ ++++ + +    +    +  IP+   +        + + AS  +I I   IP  
Sbjct: 1   MKLSIAKNELNDAIQQVAKAASTRPAIPILGGIKFDVTHQGITLTASDTDISIQSFIPVE 60

Query: 61  --------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   VD  GS+ + +  + +IV+KL          E        I  G ++  +  
Sbjct: 61  SGDSIVAKVDKPGSVVLPSKFIVEIVKKLPSDEV---EIEVGEQFITMIRSGSTDIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E     ++   +LK+L+ +T FA +T E    L G   ++ E +L+  
Sbjct: 118 LDPEEFPVLPSIEQSDVLQIPGDLLKSLIRQTVFAASTSEQTPILTGALVNLFEGELRF- 176

Query: 173 AVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
            VATD HRLA     +      +  ++++  K + E+ R++    + V++ +++++    
Sbjct: 177 -VATDRHRLANRSAHVDTLPSLRFSNVVISAKTLNELSRLIPDASALVEMVVADNQALFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL-S 289
           I S+    RL+DG +P+   +IP S   EL V+   L  A+DR  +MS   +   V+L +
Sbjct: 236 IGSVLFYSRLLDGTYPDTSKIIPQSYKTELVVDTKKLTDAIDRAYLMSREEKTNIVRLIT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L    + ++  + ++G+  E +  +      + I FN KY+L+++  I S     +++  
Sbjct: 296 LEHGGIEISSSSSELGRVTEQLEAFKMEGEALRIAFNSKYMLDVLKVIDS-----EQLNI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   + S + IR  D           ++ Y+++P R
Sbjct: 351 QFTGAMSPIIIRPADHP---------HSTYIILPYR 377


>gi|237710743|ref|ZP_04541224.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA]
 gi|229455465|gb|EEO61186.1| DNA polymerase III [Bacteroides sp. 9_1_42FAA]
          Length = 374

 Score =  288 bits (738), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 96/372 (25%), Positives = 178/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ ++   
Sbjct: 1   MKFIVSSTGLFSHLQAISRVINSKNSLPILDCFLMELTDGTLFLTASDSETTLSTSLEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  + + ++++ +      F  N    E+ + + +  + L      E+P
Sbjct: 61  ESDGDGRFAVSSKTILEALKEIPEQP--LTFLVNTENLEITVQYQNGKYSLMGQNADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                        + + V+   + R+ FA A +E+R  +NGI+F I  ED+    VA+DG
Sbjct: 119 QAPALGANAVHVTMGAPVMLAGINRSLFATADDELRPVMNGIYFDITTEDITF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V     VA   +  + I+P+K    +  +L  +   V++   +      +E+ SM 
Sbjct: 177 HKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLLPKEQGDVQIDFDDRNATFTLENYSMI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +  ++   L  A+ RVS+ SS     +KL LS +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPHKATIDRMTLISALRRVSVFSSQASSLIKLRLSENQIQIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+      E++F L   + + 
Sbjct: 296 AQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLIDILNNISAQ-----EILFELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPVEQEENED 362


>gi|154483924|ref|ZP_02026372.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC
           27560]
 gi|149735415|gb|EDM51301.1| hypothetical protein EUBVEN_01630 [Eubacterium ventriosum ATCC
           27560]
          Length = 366

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 174/386 (45%), Gaps = 25/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++SD++  +    + +  K T+ +   +L+ A +G ++  A+  E+ I   +   
Sbjct: 1   MKLVCKKSDLITGINIVMKAVSSKTTMSILECILIDATEGEIKFTANDMELGIETKVEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI + A +  +IVRKL D   +    +    T+ NI+  +S F +      +F  
Sbjct: 61  IIEAGSIAIDAKIFSEIVRKLPDNDVVIEVNDE---TKANITCENSKFNILVKSADDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L+   LK L+ +T F +   +    L G  F +     +L  VA D  R
Sbjct: 118 LPEIEKKDKITLSQFALKELIRQTIFTVNDADKNKILTGELFEVMGN--RLKVVALDKFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A+  +++         ++VP K++ EI +IL+   D  V +  + + I    +   +  
Sbjct: 176 IAIRNMELKEDYGN-FKVLVPGKSLNEISKILNGGVDDEVNIYFTSNHILFEFDETKVVS 234

Query: 240 RLIDG-EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297
           RLI+   + +   +I      ++ +N   +   +DR +++      + V L++   ++ +
Sbjct: 235 RLIECSNYFDTDKMISNDYKTKITINKKEMANCIDRATLLIKEGDKKPVFLTIKDTEMEL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           ++ N  +G   ES+ +      M I FN K+L++I+  + S     +EV     +  +  
Sbjct: 295 SI-NTFIGSMDESIPIVREGSDMMISFNPKFLIDILRVLDS-----EEVNIYFTNPKAPC 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FIR          D++ +  YV++P+
Sbjct: 349 FIR----------DDENSYIYVVLPV 364


>gi|225012856|ref|ZP_03703289.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A]
 gi|225002978|gb|EEG40955.1| DNA polymerase III, beta subunit [Flavobacteria bacterium MS024-2A]
          Length = 372

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 87/386 (22%), Positives = 171/386 (44%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L     +I   NT+P+  + L + N   L + AS  E   +  I   
Sbjct: 1   MKFIVSSAALLKELQMLGGVINSTNTLPILDNFLFEINGNSLTLTASDLETTFSTRIAVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + + A LL D ++   +        E      V IS  +  + +     +EFP 
Sbjct: 61  SESNSMVALPARLLLDTLKTFPEQPLTFIKTE---KNTVEISANNGKYAVAYVEGNEFPK 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  + S +L   +  T FA   +++R  ++G+FF  + E L    VATD H+
Sbjct: 118 AAQVNDAKTTLIQSDILYTAINSTLFASGNDDLRPVMSGVFFQFSTESLTF--VATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L                 I+P+K +  +  IL    S + +  +++         +++ R
Sbjct: 176 LVKYTRS-DVTATDTSEFIMPKKPLQLLKGILQGSISEISIEYNDTNAQFRFGDSALTCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG++PNY+ VIP  N  +++V+  +   +V RVSI S+     ++L ++   L ++ +
Sbjct: 235 LIDGKYPNYEAVIPKENPNQMQVSRVSFLNSVRRVSIFSNKTTHQIRLKIAGAALQISAE 294

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D    A E ++  Y    + I FN ++L+E+++N+       D++   +   N +  +
Sbjct: 295 DFDYSNSAEERLDCDYQGDDIQIGFNSRFLIEMLNNMEC-----DQIKLSMSLPNRAGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D     N +   +   ++MP+ +
Sbjct: 350 TPLD-----NTEEGEHITMLVMPVML 370


>gi|224023849|ref|ZP_03642215.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM
           18228]
 gi|224017071|gb|EEF75083.1| hypothetical protein BACCOPRO_00566 [Bacteroides coprophilus DSM
           18228]
          Length = 374

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 181/372 (48%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN++P+    L++  DG L + AS  E  ++ +I  S
Sbjct: 1   MKFIVSSTALFSHLQAISRVINSKNSLPILDCFLIELQDGTLSMTASDNETTLSTSIEVS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G   VS+  L + ++++ +      F+ N    E+ + + +  + L      E+P
Sbjct: 61  DYEEDGRFAVSSKTLLEALKEIPEQP--LSFQINSSNLEITVQYQNGKYSLMGQSADEYP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              E  E      + + +L   + R+ FA A +E+R  +NGI+F I  ED+ L  VA+DG
Sbjct: 119 QASELNEGAVQVVMGADILTTGINRSLFATADDELRPVMNGIYFDITTEDITL--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V      A   +  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 177 HKL-VRNKTYAAHGEEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNATFTLENYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +  ++  +   A+ RVS+ SS     +KLSLS + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKAIIDRASFISALRRVSVFSSQASSLIKLSLSENMMKIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A ES+   Y+   M I F   +L++I++NI+S       V+  L   + + 
Sbjct: 296 AQDIDFSTSAEESLICQYDGNAMSIGFKSSFLIDILNNIASQ-----NVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            +  ++++   +
Sbjct: 351 VVVPEEQEENED 362


>gi|15834966|ref|NP_296725.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg]
 gi|270285140|ref|ZP_06194534.1| DNA polymerase III subunit beta [Chlamydia muridarum Nigg]
 gi|270289162|ref|ZP_06195464.1| DNA polymerase III subunit beta [Chlamydia muridarum Weiss]
 gi|301336535|ref|ZP_07224737.1| DNA polymerase III subunit beta [Chlamydia muridarum MopnTet14]
 gi|14194691|sp|Q9PKW4|DPO3B_CHLMU RecName: Full=DNA polymerase III subunit beta
 gi|7190388|gb|AAF39208.1| DNA polymerase III, beta subunit [Chlamydia muridarum Nigg]
          Length = 366

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 186/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 1   MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFTATDLTVSTRCVVKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGSVTIPSRRFFQLIREL---TEANIEVAANSGEMATITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I+  +  +  V TDG R
Sbjct: 118 LPDMQNALRFTLDSEQLKDMFQRTSFAVSREESRYVLTGVLLSIS--NGTMTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R ++S+D    + L +++I +   +  +  +
Sbjct: 176 LAKIDTNISLDPSFSGDYIIPIKAVEEIIR-MASEDVQSTIFLDQTKIAVECGNTLLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTQSSVQLNLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|218130098|ref|ZP_03458902.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697]
 gi|317476591|ref|ZP_07935836.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
 gi|217987602|gb|EEC53930.1| hypothetical protein BACEGG_01685 [Bacteroides eggerthii DSM 20697]
 gi|316907187|gb|EFV28896.1| DNA polymerase III [Bacteroides eggerthii 1_2_48FAA]
          Length = 374

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +      F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTDGRFAVTAKTLLDALKEIPEQP--LTFDINTDSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +   V +   E    + +E+  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLENYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y   PM I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPVEQEENED 362


>gi|25026559|ref|NP_736613.1| DNA polymerase III subunit beta [Corynebacterium efficiens YS-314]
 gi|259508309|ref|ZP_05751209.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314]
 gi|23491838|dbj|BAC16813.1| putative DNA polymerase III beta subunit [Corynebacterium efficiens
           YS-314]
 gi|259164127|gb|EEW48681.1| DNA polymerase III, beta subunit [Corynebacterium efficiens YS-314]
          Length = 394

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 164/398 (41%), Gaps = 28/398 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V R D++  +G   R +  K T PV   +L+ A+D  LE+     E+     + A V 
Sbjct: 8   FRVAREDLVTSVGWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYEVSTRVRVSAEVA 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
           V G I V+  +L +I+  L +            G++V +S G ++F L S P  ++P   
Sbjct: 68  VPGRIAVAGKILSEIIGTLPNKPVDFRLD----GSKVLVSCGSASFELPSIPLDDYPPLP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                 +  +   +    V +   A   ++    L G+   I+   + L   ATD  RLA
Sbjct: 124 SLPE-RTGSINPKLFTEAVTQVASAAGRDDSLPMLTGVNMEIHGNQISL--AATDRFRLA 180

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +   +     + + + +++P K + E  R L +  +  + +++        E    +  +
Sbjct: 181 LRTFEWDPASSGIEAKLLIPAKTLLENARTLDTGLNEEIGIAVGTGEQVGREGLFGIRTD 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN Q ++P  +     V    L  AV RVS+++  R   + +  S  
Sbjct: 241 NRESTTRMLDADFPNIQPLLPKEHTAIASVEIAPLLDAVRRVSLVA-DRNAQIIMEFSDG 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ ++    D G A E +   +    + I FN  YL + +  I +        VF     
Sbjct: 300 QVILSAGGSDAGHAQEVLPCAFTGKDLKIAFNPGYLKDGLSVIPTS-----RAVFGFTEP 354

Query: 354 NSSVFIRGKDKDSKNNKD------NKVNAFYVLMPMRI 385
           +    +  + ++     +            Y+LMP+R+
Sbjct: 355 SRPAIMIPEPEEFPEADERGVFQTPDTYFTYLLMPVRL 392


>gi|227831832|ref|YP_002833539.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC
           700975]
 gi|227452848|gb|ACP31601.1| DNA polymerase III, beta subunit [Corynebacterium aurimucosum ATCC
           700975]
          Length = 444

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 171/399 (42%), Gaps = 30/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD
Sbjct: 58  FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVD 117

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL DIV  L +  +I   +E+    +V +  G S F L   P  ++P   
Sbjct: 118 EPGRIAVAGKLLSDIVASLPN-KEIEMTQED---NKVLLICGSSRFELPLIPLDDYPQLP 173

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +    + +   A   ++    L G+   IN   +++   ATD  RLA
Sbjct: 174 VLPEVTGTINPQ-LFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEM--TATDRFRLA 230

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +   +     + + + ++VP K + E  R L +  +  V++++        E    L+ +
Sbjct: 231 MRTFEWEPVSSDVQAKLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHAD 290

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN   ++P ++     +    L++A+ RVS+++  R   +++  S  
Sbjct: 291 NRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEG 349

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ +     D G+A E++   +N      I FN  YL + +  + ++      VVF    
Sbjct: 350 EVTL-AAGADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTN-----RVVFGFTE 403

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++     ++      + +  Y+LMP+R+
Sbjct: 404 PSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 442


>gi|123965235|ref|YP_001010316.1| DNA polymerase III subunit beta [Prochlorococcus marinus str. MIT
           9515]
 gi|123199601|gb|ABM71209.1| DNA polymerase III, beta chain [Prochlorococcus marinus str. MIT
           9515]
          Length = 385

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 191/399 (47%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M+I   +++    +    + +  + T P+  ++LL A+ G   + +      + I  +  
Sbjct: 1   MEIVCNQNEFNYAIQLVSKAVSSRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G+IT+ + LL +IV KL     +S   ++     + I     +F ++  P  ++
Sbjct: 61  ATVKKSGAITIPSKLLAEIVNKLPSETPVSLDVDDSSDNIL-IKSDRGSFNIKGIPSDDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E   S  +  S     ++ T FA ++++ +  L G+ F  N + L+  + ATDG
Sbjct: 120 PNLPFVESGTSLNIDPSSFLKALKLTIFASSSDDSKQLLTGVNFTFNLKFLE--SAATDG 177

Query: 179 HRLAVAEVDIVAQ---------IAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAV  VD                  S+ +P +++ EI +++S  + ++S+K+   + +
Sbjct: 178 HRLAVVLVDKKENFDEVADLSSNEDNLSVTIPTRSLREIEKLVSLRTSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP    K    N   L  +++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGSYPNYSQLIPDDFSKLFTFNTKILIDSLERIAVLADQQSSVVK 297

Query: 288 LSLSSDKL-CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L    L  ++ D  D+G A E + V Y+    DI FN +YLLE +  ISS     + V
Sbjct: 298 IKLEEKGLALISADAQDIGNASEIVPVSYDFDQFDIAFNVRYLLEGLKVISS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +F+ + S +   +  +D  S        +  Y++MP+++
Sbjct: 353 LFKCNLSTTPAVLVPEDNIS--------SFTYLVMPVQV 383


>gi|58700013|ref|ZP_00374572.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
 gi|58533470|gb|EAL57910.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
           Drosophila ananassae]
          Length = 332

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 117/337 (34%), Positives = 200/337 (59%), Gaps = 5/337 (1%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V R+ +L  L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 1   MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +SAH L+DIV+KL     ++F   N+   ++ +S G++NF L +   S FP+
Sbjct: 61  VLTEGEVKISAHTLHDIVKKLPADLDVNFEVNNQ--GKLLMSCGNANFSLPNVVSSSFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E+ Y + F L ++ L +L+ +T FA++ ++ RY LNGI+ H +E+   L  VATDGHR
Sbjct: 119 LEEDNYKHDFILLNTDLIDLLTKTKFAVSLDDTRYNLNGIYLHTDEQ--FLYCVATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  +      I     +I+PRK V E+L+IL   +  +KV LS+ +I L      +  +
Sbjct: 177 LSCIKRPKPGNINGEFGVIIPRKTVMELLKILDDCNE-IKVKLSDRKIKLTCGEYILISK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG FPNY+ VIP S DK + +    L   +DRVS++ S +++++K SL    L +  +
Sbjct: 236 LIDGTFPNYKAVIPASQDKHMIIESKKLSDVIDRVSVVVSDKVKSIKFSLQEKLLTLHSN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           + +   A ES+ V YNE P++I FN +YLL+++  I 
Sbjct: 296 SQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK 332


>gi|29346774|ref|NP_810277.1| DNA polymerase III subnit beta [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|253572230|ref|ZP_04849633.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6]
 gi|298386579|ref|ZP_06996135.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14]
 gi|29338671|gb|AAO76471.1| DNA polymerase III, beta chain [Bacteroides thetaiotaomicron
           VPI-5482]
 gi|251838005|gb|EES66093.1| DNA polymerase subunit III [Bacteroides sp. 1_1_6]
 gi|298260956|gb|EFI03824.1| DNA polymerase III, beta subunit [Bacteroides sp. 1_1_14]
          Length = 374

 Score =  288 bits (737), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +     +   N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQPLTFYV--NTDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    E     E+ + VL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAVLGENAVRVEMEAGVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y+   M I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYSGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPVEQEENED 362


>gi|152963974|ref|YP_001359758.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151358491|gb|ABS01494.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 383

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 173/389 (44%), Gaps = 22/389 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPAS 60
           ++ VER  + + +  A R +  +  +PV   VLL+A D G L++     E+     +PA 
Sbjct: 10  ELQVERDVLADAVAWAARALPSRPPVPVLAGVLLEATDEGTLKLSTFDYEVSARVELPAD 69

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL DI R L +       +    G++V ++ G S F L +    E+P+
Sbjct: 70  VRTAGRVLVSGRLLADISRSLPNRPVTLTTE----GSKVVVTCGASRFTLLTMTVEEYPA 125

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S EL  +     V +   A + +E    L G+   I  +  +L  +ATD +R
Sbjct: 126 LPTLPDS-SGELPGAEFTEAVAQVTVAASRDETLPILTGVRMEIEGD--RLTLLATDRYR 182

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLS 236
           LAV E+        + ++ +V  + + ++ R L S  S + +++++ +   I        
Sbjct: 183 LAVRELRWNPSSPDISAVALVRARTLSDVARSLGSS-SMLTMAMADGKSDLIGFQAGGRY 241

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +  L+DGE+P  + + P  +     V+   L +AV RV++++  R   V+L      L 
Sbjct: 242 STSLLVDGEYPKVRALFPAESPTHAVVSTAALTEAVKRVALVA-ERNTPVRLRFEDGVLS 300

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     +  +A E++        + I FN ++LL+ +  +++              S   
Sbjct: 301 LEAGQGEDAQATEALEAALVGESIAIAFNPQFLLDGLGALAA-----PFARLSFTQSTRP 355

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G+   +  + D+  +  Y+LMP+R+
Sbjct: 356 AVLTGQ---ADLDGDDDDSYRYLLMPVRL 381


>gi|54292966|ref|YP_125381.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens]
 gi|53752798|emb|CAH14232.1| DNA polymerase III, beta chain [Legionella pneumophila str. Lens]
          Length = 367

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 111/386 (28%), Positives = 198/386 (51%), Gaps = 23/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +    
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 62  D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSITV A    DI+R L + A  S   +  L   V I    S F L + P   +PS
Sbjct: 63  KNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+      +   + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A++             +++P+K V E+LR+L+   D  V ++  +S I L         
Sbjct: 178 MAISRYSC--NNITQKKLLIPKKGVQELLRLLNCINDEQVLLTAGKSHIKLITNQFVFLS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP   DK + ++C +L++A+ R+ I++  + +AV L L   +L +  
Sbjct: 236 KLIEARFPPYTKAIPREQDKCIVIDCASLKRALSRIVILAHEKSKAVLLHLQQGQLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +AIE+++       + I  N  YLL+++ + S     + ++   + ++ SS+ I
Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLTHFS-----EGQIRLSMSNTESSILI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D         N  Y++MPM+I
Sbjct: 351 ESLIND---------NYQYIIMPMKI 367


>gi|270289891|ref|ZP_06196117.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4]
 gi|304385856|ref|ZP_07368200.1| DNA-directed DNA polymerase III beta subunit [Pediococcus
           acidilactici DSM 20284]
 gi|270281428|gb|EFA27260.1| DNA polymerase III, beta subunit [Pediococcus acidilactici 7_4]
 gi|304328360|gb|EFL95582.1| DNA-directed DNA polymerase III beta subunit [Pediococcus
           acidilactici DSM 20284]
          Length = 379

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 95/395 (24%), Positives = 175/395 (44%), Gaps = 29/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK T+ R+  ++ L    R I  K TIP+   + ++A    L +  S  +I I   I   
Sbjct: 1   MKFTIARNTFIKKLNAVQRAISSKTTIPILTGLKIKAEADQLVLTGSNTDISIETTISVN 60

Query: 58  ----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I ++A    DIV+KL D        E   G +  I+ G S F +   
Sbjct: 61  DPDAELDIEQTGDIVLTARFFSDIVKKLPDNK---MLVEVSDGFQTTITSGASEFKINGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + FP   E +   +  L + V   ++  T  A++ +E R  L GI F I  E+ KL A
Sbjct: 118 DANNFPHLPEVDSQTTITLQADVFSEMINETVIAVSNQESRPILTGIHFTI--ENNKLTA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   +++   +     II+P K++ E+ R+L  +  ++ + +SE++     +
Sbjct: 176 VATDSHRLSQRIINLPEAVKMPEDIIIPGKSLLELSRMLDEEIDTITLQISENQALFTFD 235

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS- 291
                 RL++G +P+   +IP  +   +      L  +++R S++S + R   VKL+++ 
Sbjct: 236 ETLFYTRLLEGLYPDTSRLIPKESTTAMEFEAPELLASIERASLLSHAGRNNVVKLTINA 295

Query: 292 -SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            + K  +T D+P++G   E +         ++I FN  YL + + +          +   
Sbjct: 296 AAKKAIITGDSPEVGNVEEVVVTKDIQGEDLEISFNPDYLKDALRSFG-----HTAIKME 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S      +   +         + N   ++ P+R
Sbjct: 351 FTSPLRPFTLVPTED--------QENFIQLITPVR 377


>gi|284039727|ref|YP_003389657.1| DNA polymerase III subunit beta [Spirosoma linguale DSM 74]
 gi|283819020|gb|ADB40858.1| DNA polymerase III, beta subunit [Spirosoma linguale DSM 74]
          Length = 379

 Score =  287 bits (736), Expect = 1e-75,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 177/392 (45%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN------DGLLEIKASGPEIEIT 54
           MK  V  S +L+ L H   ++     +P+  + L + +       G L + AS  +  +T
Sbjct: 1   MKFIVSSSVLLKNLQHINGVVATNPIVPILENFLFRIDVGDGLTGGTLTVTASDLQTTMT 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
             IP   +  GSI + A LL D +R L +            GTE  I   +  + L    
Sbjct: 61  TQIPVEANESGSIAIPAKLLLDTLRSLPEQPVTVNIDTETFGTE--ILTDNGRYKLSGEN 118

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             +FP         S ++ S VL + +  T FA +T+++R  + G+   +N++      V
Sbjct: 119 PIDFPKLPTVNKNMSVDMTSDVLLSAINNTVFATSTDDLRPAMTGVLLQLNDDSATF--V 176

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDGHRL +         +   SII+PRKA+  +   L  ++  V    S++        
Sbjct: 177 ATDGHRL-IRYRRTDLNASASTSIIIPRKALQLLKASLP-ENVPVTAEFSQANASFTFGP 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLID  FP+Y+N IP +N   + +  T+L  ++ R+ I ++     ++LSL ++ 
Sbjct: 235 TQLICRLIDERFPDYENAIPTNNPNVMTIGRTDLLNSLKRIMIYANRTTHQIRLSLKANS 294

Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           L ++ ++ D   +A E +   Y    M+I FN K + E++ N+S+       +   + + 
Sbjct: 295 LTISAEDLDYSNEANEKLLCDYEGDAMEIGFNAKLMAEVLSNLSAK-----MISLEMSAP 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           N +  +   DK+         +   ++MP+ +
Sbjct: 350 NRAGLLIPADKE------ENEDILMLVMPVML 375


>gi|332665319|ref|YP_004448107.1| DNA polymerase III subunit beta [Haliscomenobacter hydrossis DSM
           1100]
 gi|332334133|gb|AEE51234.1| DNA polymerase III, beta subunit [Haliscomenobacter hydrossis DSM
           1100]
          Length = 372

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 178/387 (45%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V  S++L+ L  A   I     +P+    L    D  L I A+  +  IT  +   
Sbjct: 1   MKFSVSSSELLKQLQVAAGSIGSNPVLPILEDFLFSIADNKLTISATDLDTAITTQMDVM 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G+I V A +L D ++ L          EN    E  I+     + L      +FP+
Sbjct: 61  ADTDGTIAVPAKILLDTLKALPQQPITFSIDENTFAIE--ITSAYGKYRLSGENGQDFPA 118

Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E E    +  + S+ L   V +T FA + +E+R  + G++F ++    K+  VATD H
Sbjct: 119 IPEPEAEDDTITIPSNALIQGVNKTLFATSNDELRLAMMGVYFQVDFS--KITMVATDAH 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +L               S I+P+KA+  I  +L + D  VK+S +++    +  +  +S 
Sbjct: 177 KLVRYTFT-DLSSEVSTSFILPKKALNLIKNVLPAGDE-VKMSFNKANAFFSFGNTQISC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLID  +P+Y  VIP  N   L V+  +   ++ R++I ++     V L++S   L ++ 
Sbjct: 235 RLIDSRYPDYHAVIPVDNPFLLTVSRADFASSLKRIAIYANKTTNQVILNISPGNLIVSA 294

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D   +A E ++  Y+  P+ I FN K+LLE+++ + S     DEV   L +S  +  
Sbjct: 295 QDLDFSNEATEKLSCTYDGDPLMIGFNAKFLLEMLNVLES-----DEVRMELSTSTRAGI 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   ++          +   ++MP+ +
Sbjct: 350 LLPVEE------VPGEDILMLVMPVML 370


>gi|227496604|ref|ZP_03926882.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM
           15434]
 gi|226833884|gb|EEH66267.1| DNA polymerase III beta subunit [Actinomyces urogenitalis DSM
           15434]
          Length = 377

 Score =  287 bits (736), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 161/391 (41%), Gaps = 24/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  + E +    R +  +  +PV   V L+A++  L + +   E+     IPA 
Sbjct: 1   MKLRVDRDVLAEAVTWTARSVPARPPVPVLAGVRLEASNASLVLASFDYEVSAHCEIPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + VS  LL DI + L         +    GT+V +S G S F L +    ++P+
Sbjct: 61  VEEEGVVLVSGRLLADIAKALPSKPVDLEVE----GTKVTVSCGSSRFALAAMAAEDYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +  L   V +   A + +E    L  +   ++ +  +L  +ATD +R
Sbjct: 117 LPVMPSTAG-TVDAHDLAQAVAQVSIAASRDETLPLLTSVQMEVDGD--RLTLMATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSE------SRIHLNIE 233
           LAV E+   +Q   + +  ++  + + ++ + L+S    V V+L+E        I     
Sbjct: 174 LAVREMTWASQDKTLSTHALLKARTLSDVAKSLTST-GDVTVALTEAGSTTSGLIGFEAG 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
               +  L DG++P    + P        V    L  AV RVS+++  R   + +S +  
Sbjct: 233 GRRTTSLLTDGDYPPVLRLFPEETSIHATVGREELMAAVRRVSLVA-DRSTPIHMSFTQG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +  +A E +  +     +   FN  YLL+ +  I         V       
Sbjct: 292 SLALDAGAGEDAQASEQLVAHLEGEDISTAFNPGYLLDGLGAIH-----QPYVTLDFTHP 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +    + G D       +  ++  Y++MP+R
Sbjct: 347 SKPAVLTGVDS---IGGEKDLSFRYLIMPIR 374


>gi|312977116|ref|ZP_07788865.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05]
 gi|310896444|gb|EFQ45509.1| DNA polymerase III, beta subunit [Lactobacillus crispatus CTV-05]
          Length = 369

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/383 (22%), Positives = 164/383 (42%), Gaps = 26/383 (6%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS----VDVCG 65
           ++E L +  R I  + TIP+   + L   +  L +  S  +I I   IP +    V+  G
Sbjct: 3   LIENLNNVMRAISSRATIPILSGIKLDLTEDKLTLTGSDTDISIEIQIPVNDDLNVESTG 62

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125
           SI + A    +IV+KL       F  E +   +  I   +S F +     + +P   E  
Sbjct: 63  SIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIISENSEFTINGLDANNYPRLPEIP 119

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              SF ++    + ++  T FA + ++ R  L G+ F  + +  K+ AVATD HRL+   
Sbjct: 120 DAASFTISGKTFREIINETQFATSNDQTRAILTGVRFFFSPD--KIKAVATDSHRLSQRT 177

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           + +         +I+P K++ E+ RI+   D  VKV   +++    I +LS   RL+DG 
Sbjct: 178 IALENGPQAETDLIIPGKSLQELARIIGEADPEVKVCPGDNQALFVIGNLSFYSRLLDGN 237

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLCMTVDNP 302
           +P+   +IP      +  + + L  A++R S+++      V    L + +    ++  + 
Sbjct: 238 YPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDIENQSAKLSGKSA 297

Query: 303 DMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
           ++G   E ++        ++I FN  Y+ + +        V D V+           I  
Sbjct: 298 EIGNVEEDVSFRNLEGNNLEISFNPDYMRDALRA-----SVTDSVIMSFTKPLRPFIINP 352

Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384
             +D +           ++ P+R
Sbjct: 353 DKEDIE--------FVQLITPVR 367


>gi|315644301|ref|ZP_07897471.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453]
 gi|315280676|gb|EFU43965.1| DNA polymerase III, beta subunit [Paenibacillus vortex V453]
          Length = 380

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 189/396 (47%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKI++ ++ + E + H  + I  + TIP+   + L      + + AS  +I I   IP  
Sbjct: 1   MKISILKNVLNESIQHVSKAISSRTTIPILSGIKLDVTYSGVTLTASDTDISIQSFIPSE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  GS+ + A    +I++KL         K+N    +  IS G +   +  
Sbjct: 61  DEKHTIVQVEQPGSVVLPAKFFVEIIKKLPSQEIQMEVKDN---FQTFISSGATEIQMVG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               EFP     E   +  +   +LKN++++T F+++T E    L G+ +++N+ +LK  
Sbjct: 118 LDPEEFPVLPNIEDSQTVSIPGDLLKNMIKQTVFSISTHETTPILTGVLWNLNDNELKF- 176

Query: 173 AVATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             ATD HRLA     +   Q     ++++  K + E+ +I+  +++ V + ++++++   
Sbjct: 177 -TATDRHRLATRSAQLEGTQDISFNNVVIAGKTLNELSKIIPDQNTLVDIVVADNQVLFK 235

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--S 289
           I+ +    R++DG +P+   +IP S+  EL ++   L +++DR  ++S      + L  +
Sbjct: 236 IDRVLFYSRILDGIYPDTSRIIPTSHKTELVLDTKKLSESIDRAYLLSKEEKTNIVLLQT 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +    + ++  + ++GK  E ++ + +   P+ I FN KY+L+++  + S     ++++ 
Sbjct: 296 MEHGGIEISSSSSELGKVREELDLIDFKGEPLRISFNSKYMLDVLKVVES-----EQLMI 350

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 S + ++  D              Y+++P R
Sbjct: 351 AFMGVMSPIVLKPLDDSKSQ---------YIILPYR 377


>gi|54295985|ref|YP_122354.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris]
 gi|53749770|emb|CAH11150.1| DNA polymerase III, beta chain [Legionella pneumophila str. Paris]
          Length = 367

 Score =  287 bits (735), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 112/386 (29%), Positives = 199/386 (51%), Gaps = 23/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++T+++ D+L  L      +++K ++ +  H LL+ +DGLL I A+  EIE++  +    
Sbjct: 3   ELTIKKEDLLTPLLTVSGAVDKKQSLAILSHFLLKLSDGLLYITATDLEIEMSAQVACDS 62

Query: 62  D-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A    DI+R L + A  S   +  L   V I    S F L + P   +PS
Sbjct: 63  NNTSGSITVPAKKFIDIIRSLDENASPSIVFDKAL---VTIKQNRSTFKLATLPAENYPS 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       +   VL  L++ THFAM+ +++R +LNG+      +   + AVATDGHR
Sbjct: 120 SEDECNDVELTIPRLVLLQLLQSTHFAMSQQDVRIFLNGLLLEF--DSNIISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +A++             +++P+K V E+LR+L+   D  V ++  +S I L         
Sbjct: 178 MAISRYSC--NNIAQAKLLIPKKGVQELLRLLNCINDEQVLLAAGKSHIKLITNQFVFLS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP   DK + ++CT L++A+ R+ I++  + +AV L L   +L +  
Sbjct: 236 KLIEARFPPYTKAIPREQDKYIVIDCTTLKRALSRIVILAHEKSKAVLLHLQLGQLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +AIE+++       + I  N  YLL+++ + S     + ++   + ++ SS+ I
Sbjct: 296 NNNEQEEAIETLSAETQGDELKIGLNATYLLDVLSHFS-----EGQIRLSMSNTESSILI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D         N  Y++MPM+I
Sbjct: 351 ESLVND---------NYQYIIMPMKI 367


>gi|300857419|ref|YP_003782402.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           FRC41]
 gi|300684873|gb|ADK27795.1| DNA polymerase III beta subunit [Corynebacterium pseudotuberculosis
           FRC41]
 gi|302205159|gb|ADL09501.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           C231]
 gi|302329717|gb|ADL19911.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           1002]
 gi|308275400|gb|ADO25299.1| DNA polymerase III subunit beta [Corynebacterium pseudotuberculosis
           I19]
          Length = 395

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 93/399 (23%), Positives = 165/399 (41%), Gaps = 29/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             VE+ D+   +    R +  K T PV   V++ A+D  LE      EI     I A V 
Sbjct: 8   FRVEKEDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEISTKVRISADVS 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL DI+  L       F +    G++  +  G S F L   P  E+P   
Sbjct: 68  QPGRIAVAGKLLSDIIGTLPAKPVEIFVE----GSQALVVCGSSRFELPLIPLDEYPILP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +            +  + V +   A   ++    L GI   I+ ED+ L   ATD  RLA
Sbjct: 124 KLPAATGAIDP-KLFADAVLQVAAAAGKDDTLPMLTGIHMEIDGEDVTL--TATDRFRLA 180

Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILS-SKDSSVKVSL-------SESRIHLNIE 233
           +        +      +++P K + +  R L  +    V++++       SE    ++I+
Sbjct: 181 LRRFQWTPAVPDAKADLLIPAKNLSDNARSLDQNSTDPVEIAVGAGESIGSEGLFGIHID 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           S   + R++D +FPN   ++P  +     V  + L  A+ RV++++  R   ++L  S +
Sbjct: 241 SRQTTTRMLDADFPNVNPLLPKVHKSMASVEISALADAIRRVALVA-ERNAQIRLQFSKN 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++    D G A ES+   Y       I FN  YL + +  I ++      VVF    
Sbjct: 300 EVILSAGGSDAGHAEESVPCAYTGDEDFLIAFNSGYLRDGLSVIKTN-----RVVFGFTE 354

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++      +        +  Y+LMP+R+
Sbjct: 355 PSRPAIMIPEPEELPEADSDGTFPTPNTDFTYLLMPVRL 393


>gi|288817885|ref|YP_003432232.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6]
 gi|288787284|dbj|BAI69031.1| DNA polymerase III beta subunit [Hydrogenobacter thermophilus TK-6]
 gi|308751484|gb|ADO44967.1| DNA polymerase III, beta subunit [Hydrogenobacter thermophilus
           TK-6]
          Length = 361

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 195/385 (50%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +V+R + L+ L  A    E+K+ +PV  + LLQA    L +KA+  E  +T ++ A 
Sbjct: 1   MRFSVDREEFLDALTKAKSATEKKSALPVLNNFLLQAQKDRLIVKATDLENFLTFSVRAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V+A  L  +++ +      +   E+    +++I+ G S F L +    +FP 
Sbjct: 61  VYEEGVVAVNADKLTSVIKAIPSATLQAQLLED----KLSITGGRSKFNLTALEAEDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +        +      +++T +A++ E+ RY L G++ H  E   K   V +DGHR
Sbjct: 117 FPEVKVSSQI--PAVDFLKAIDKTEYAISKEDTRYALQGMYIH--EHKGKTHFVGSDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+              +++PRK++  I  +L      + +    S  HL  E   +S+R
Sbjct: 173 LALYFTP----SPFSLELLIPRKSLKVIEGLLKDYIGEISIGKDGSFAHLQGEDFQLSIR 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GE+P+Y +VIP S + E+ +N +    A+ R+S ++      VK+SL  +     + 
Sbjct: 229 LLEGEYPDYLSVIPESFNIEVLINKSEFLSALKRLSAIAESSAFPVKISLQDNLAVFEIT 288

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
            P+ G+  + +++ Y++ PM++ FN KYL+E +++  +++V       ++   +S++ + 
Sbjct: 289 EPEYGEGRDEVDIEYSQEPMELGFNGKYLIEALESFDTEKVW-----LKIVDPDSAIVLD 343

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +DK+S            ++MPMRI
Sbjct: 344 SEDKESDP-------YMCLVMPMRI 361


>gi|19551252|ref|NP_599254.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC
           13032]
 gi|62388895|ref|YP_224297.1| DNA polymerase III subunit beta [Corynebacterium glutamicum ATCC
           13032]
 gi|145294045|ref|YP_001136866.1| DNA polymerase III subunit beta [Corynebacterium glutamicum R]
 gi|21322767|dbj|BAB97396.1| DNA polymerase III beta subunit [Corynebacterium glutamicum ATCC
           13032]
 gi|41324228|emb|CAF18568.1| DNA POLYMERASE III, BETA SUBUNIT [Corynebacterium glutamicum ATCC
           13032]
 gi|140843965|dbj|BAF52964.1| hypothetical protein [Corynebacterium glutamicum R]
          Length = 394

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 161/398 (40%), Gaps = 28/398 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V R D++  +    R +  K T PV   +L+ A+D  LE+     ++     + A V 
Sbjct: 8   FRVAREDLVTAVAWVARNLPTKPTQPVLRAMLITADDEGLELAGYDYDVSTRVRLSAEVS 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL +I   L +            G++  ++ G S F L   P  ++P   
Sbjct: 68  QPGRIAVAGKLLSEITGSLPNKPVDFRID----GSKAFVTCGSSRFELPLIPLDDYPMLP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +     +  + + +    V +   A   ++    L G+   I    + L   ATD  RLA
Sbjct: 124 KLPAG-TGSINAKLFTEAVSQVASAAGKDDSLPMLTGVSMEIVGNQINL--AATDRFRLA 180

Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +   +  A   +    +++P + + +  R L S  + S+ +++        E    ++ +
Sbjct: 181 LRTFEWEANDPELNVKLLIPARTLLDNARSLDSGLNDSIDIAVGTGDQVGREGLFGVHTD 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + RL+D +FPN   ++P  +     V    L  A+ RVS+++  R   + L  S  
Sbjct: 241 NRETTTRLLDADFPNIAPLLPKEHTAIASVEIAPLVDAIRRVSLVA-ERNAQIVLHFSEG 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +T    + G A E++   +    + I FN  YL + +       V     VF     
Sbjct: 300 QVILTAGATEAGHAEETLPCAFTGKELTIAFNPGYLKDGLSV-----VPTSRAVFGFTEP 354

Query: 354 NSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
           +    +  + ++  +  +N           Y+LMP+R+
Sbjct: 355 SRPAIMIPEPEEMPSANENGIFQTPDTYFTYLLMPVRL 392


>gi|224535481|ref|ZP_03676020.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus
           DSM 14838]
 gi|224522895|gb|EEF92000.1| hypothetical protein BACCELL_00344 [Bacteroides cellulosilyticus
           DSM 14838]
          Length = 374

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 101/367 (27%), Positives = 177/367 (48%), Gaps = 13/367 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L I  S  E  +  ++   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELKDGTLSITVSDSETTMVTSVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  + D ++++ +      F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDADGRFAVAAKTILDALKEIPEQP--LSFEVNTNSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ +SVL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDASVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    I  +L  +   V +   E      +E   M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRMQLVGALRRVSIFSSQASSLIKLRMQPNQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y+  PM I F   +L++I++NI++     DEV+  L   + + 
Sbjct: 296 AQDIDFSTSAEETLACQYDGNPMSIGFKSTFLIDILNNIAA-----DEVIIELADPSRAG 350

Query: 358 FIRGKDK 364
            I   ++
Sbjct: 351 VIIPVEQ 357


>gi|296435593|gb|ADH17767.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9768]
 gi|296437453|gb|ADH19614.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/11074]
 gi|297139952|gb|ADH96710.1| DNA polymerase III subunit beta [Chlamydia trachomatis G/9301]
          Length = 366

 Score =  287 bits (734), Expect = 2e-75,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R+++  L+     ++ +   IPV  HVL+++ +  L   A+   +     + A 
Sbjct: 1   MKFVISRNELGNLIKKVQNVVPQSTPIPVLTHVLIESCNDELVFMATDLTVSTRCVVKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+T+ +   + ++R+L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGSVTIPSRRFFQLIREL---TEANIEVAAHSGEMATITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L S  LK++ +RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 118 LPDMQNALRFTLDSERLKDMFQRTSFAVSREESRYVLTGVLLSIA--NGTMTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     I+P KAV EI+R +SS+D    + L +++I +   +  +  +
Sbjct: 176 LAKIDTEISLDPSFSGDYIIPIKAVEEIIR-MSSEDVQSTIFLDQTKIAVECGNTLLVTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK S S  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTHSSVQLDLHREELISLLKQVALFTNESSHSVKFSFSPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y    ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYTGETLEIAFNPFFFLDILKH-----SRDELVQLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|238915978|ref|YP_002929495.1| DNA polymerase [Eubacterium eligens ATCC 27750]
 gi|238871338|gb|ACR71048.1| DNA polymerase [Eubacterium eligens ATCC 27750]
          Length = 367

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 171/385 (44%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +G   + +  + T+ +   +L+ A    ++   +  E+ I   +   
Sbjct: 1   MKLVFTKSNLNKAVGIVMKAVPTRTTMNILECILIDATTNEIKFTGNDMELGIETIVEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + + A L  +IVRKL D         N       I+   S F +      +F  
Sbjct: 61  IIEKGKVAIDAKLFSEIVRKLPDNDITLTTDSN---NNALITCEKSKFNIAGKSGDDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L+   LK ++ +T F++A  +    + G  F +NE  LK+  V  DGHR
Sbjct: 118 LPAIIKDKMITLSQFQLKEVINQTIFSIAINDNNKMMTGELFEVNEGTLKV--VGLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+  + +  +   +  +++P K + EI +IL+   +S V +  + + +    +   +  
Sbjct: 176 IAIRNIKLEGRADDVR-VVIPGKTLQEISKILNADAESFVNIYFTNNHVLFEFDQTHVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMT 298
           RLI+G++     ++    + ++ +N      ++DR +++      + + +++ +  L + 
Sbjct: 235 RLIEGDYFKISQMLSNDYETKVSINKKEFLDSIDRANLLIREGDKKPIIINILNGLLQVN 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++  +G   E +++      + I FN K+L++ +  I      D+ V   L +  S  F
Sbjct: 295 VNSA-IGALNEDIDIDKEGKDIMIGFNPKFLMDALRVID-----DENVTIYLVNHKSPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR K++          N  Y+++P+
Sbjct: 349 IRDKEE----------NYIYLILPV 363


>gi|225386352|ref|ZP_03756116.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme
           DSM 15981]
 gi|225047534|gb|EEG57780.1| hypothetical protein CLOSTASPAR_00096 [Clostridium asparagiforme
           DSM 15981]
          Length = 373

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 177/385 (45%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  ++  +    + +  K T+ +   +L+ A+   +++  +  E+ I   +   
Sbjct: 1   MKLRFQKDALVNGINIVLKAVPSKTTMSILECILIDASGSEIKLTGNDMELGIETTVAGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I R++   +      E++      I   +S F +Q     EF  
Sbjct: 61  ILEHGKIALDAKLFSEITRRVSSESSAVVSIESDERFNTTIRCENSVFNIQGRDGEEFAY 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++++T F+++  +    ++G  F +NE   +L  V+ DGHR
Sbjct: 121 LPYIERDKYICLSQFTLKEVIQQTIFSISPNDSNKMMSGELFEVNEN--QLQVVSLDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +      +  +IVP K +GE+ +IL+   +  V +  S + I    +S  +  
Sbjct: 179 ISIRKVRLKDHYDDI-KVIVPGKTLGEVSKILNGDNEKEVLIYFSANHILFEFDSTIVVS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++ VN       ++R +I+      + + ++++ + + + 
Sbjct: 238 RLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATILIRENDKKPLIINITDNSMQLK 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     + ++ N   + I FN K+L++ +  I      D+E+   + +  S  F
Sbjct: 298 LNSS-FGSMNADLLIHKNGKDIMIGFNPKFLIDALRAID-----DEEINLYMMNPKSPCF 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ N  Y+++P+
Sbjct: 352 I----------KDDEENYIYLILPV 366


>gi|329955850|ref|ZP_08296653.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056]
 gi|328525230|gb|EGF52280.1| DNA polymerase III, beta subunit [Bacteroides clarus YIT 12056]
          Length = 374

 Score =  287 bits (734), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +         N L  E+ + + +  + L      EFP
Sbjct: 61  ESDTDGRFAVTAKTLLDALKEIPEQPLTFDINTNSL--EITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +   V +   E    + +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPANLMKNLLPKEQGMVTIEFDERNAVVTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENRIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y   PM I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQTCQYTGNPMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPVEQEENED 362


>gi|258510022|ref|YP_003183456.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257476748|gb|ACV57067.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 374

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 91/374 (24%), Positives = 169/374 (45%), Gaps = 20/374 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  +   L    + +  +    V   +L++ ++  +   A   E+ I   +P  
Sbjct: 1   MEFSLQKQALSNALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   G+I + A    DIVRKL D  +I    +    TE  IS     F+L    
Sbjct: 61  EETGLRVHQTGAIVLPARYFGDIVRKLPD-TEIHMRVDANYMTE--ISAQSVEFHLHGID 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP         S ++ +S L  L+E T FA AT E+R  L G+   I  +   L  +
Sbjct: 118 AEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGV--SITSDPTHLTFI 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG RLA   V           +++P K++ E+ +IL   ++SV++ L+ S     I  
Sbjct: 176 ATDGLRLAQHRVP--QADLPERQVVIPAKSLSELSKILPEDETSVEMVLTPSHGLFVIGP 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293
                RL++G +P+   +IP S   ++ ++      A+DR ++++  +    V+L ++ D
Sbjct: 234 TRFYTRLLEGTYPDTSRLIPRSARTQVVLDGDAFLHAIDRAALIARDKDNHMVRLEVTGD 293

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            L +T  +P++G   E+++        + I FN +Y++E +  + +      E+  R + 
Sbjct: 294 TLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAA-----EIAIRFNG 348

Query: 353 SNSSVFIRGKDKDS 366
           +N +  I      S
Sbjct: 349 ANQAFVIERSGDPS 362


>gi|163781756|ref|ZP_02176756.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
 gi|159882976|gb|EDP76480.1| DNA polymerase III beta chain [Hydrogenivirga sp. 128-5-R1-1]
          Length = 363

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 98/386 (25%), Positives = 196/386 (50%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R +  E L  A    E+K+ +P+  + LL A    L ++A+  E  +  ++ A 
Sbjct: 1   MKLQIDREEFEEALKKAREATEKKSALPILTNFLLTAEGDRLVVRATDLENYLVLSVKAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  GS+ VS+  L DIVR L + A +    E   G ++ I+ G S F L +    +FP 
Sbjct: 61  IEEGGSVCVSSRSLSDIVRNL-NSALLYIETE---GEKLVITGGRSKFKLPTVSPEDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        ++ +++   + +T +A+A EE R  L G++      + ++  V +DGHR
Sbjct: 117 FPEVVEGEE-AISGNLILKGIAKTEYAIAKEEARISLQGMYM--KGHEGRVHFVGSDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           L++       + +    +++PRK++  I R+L+  +D  V  S   S  +   E   + V
Sbjct: 174 LSL----FEPEGSFSYELLIPRKSLKVIQRLLTGIEDVRVAKSEDGSFAYFTSEEWKLIV 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL++GE+P+Y  VIP     E+ ++    ++A+ R+S ++  ++  VK++L+ +   +  
Sbjct: 230 RLLEGEYPDYLAVIPHEFSAEVLLDVEETKRALKRLSGLAEGKVFPVKITLNDNLAVLEF 289

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G+  E ++V Y     +I FN +Y+LE ++ + S++       F+  + +++  +
Sbjct: 290 MDPEFGEGREELDVDYVGETFEIGFNGRYILEALEALDSEK-----AWFKFTTPDTAALL 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              D +S            ++MPMR+
Sbjct: 345 ESDDYESDP-------YRCIIMPMRV 363


>gi|194476875|ref|YP_002049054.1| DNA polymerase III subunit beta [Paulinella chromatophora]
 gi|171191882|gb|ACB42844.1| DNA polymerase III subunit beta [Paulinella chromatophora]
          Length = 394

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 86/408 (21%), Positives = 179/408 (43%), Gaps = 39/408 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+   ++++   L    R +  + T P+  +VLL A    GLL +      + I  +I 
Sbjct: 1   MKLVCSQTELNTSLQLVSRAVATRPTHPILANVLLTANAETGLLSLTGFDLNLGIQISIS 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ASV+  G+IT+ + LL +IV +L +   I+   + +    + ++     + ++S P ++F
Sbjct: 61  ASVETSGAITLPSRLLGEIVSRLSNEGPIT-ISDMKGQERIELTSISGTYQMRSMPAADF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P            L +  L   +  T FA + +E +  L G+       +L+    ATDG
Sbjct: 120 PDLPLIVSGIPVRLEAEALIRGLRGTIFATSNDEAKQVLTGVHLCFTNHELE--CAATDG 177

Query: 179 HRLAV-----------------AEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSV 219
           HRLAV                  +        +  ++ +P +++ E+ R+LS      +V
Sbjct: 178 HRLAVLRLANAVTEDLLIKAEEIKETEEEDGIEDFAVTLPARSLKELERLLSGHPTKEAV 237

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            +  +  +      +  ++ R +DG +P Y+ +IP    + + +    L  A++RV++++
Sbjct: 238 SLFYNRGQAVFLWANQILTSRTLDGIYPAYKGLIPDHFTRSIALERKALISALERVAVLA 297

Query: 280 SVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
                 V+L       +LC++ D  ++G   E M        ++I FN +Y+L+ +  + 
Sbjct: 298 GQHNNVVRLEGDPMTRQLCISADAQEIGSGSEEMLAIITGGCIEIAFNVRYMLDGLKAM- 356

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                D+ +    +SSN+   +  +            +  Y++MP+++
Sbjct: 357 ----TDERIEILCNSSNTPAILTPQGD--------MHSFMYLIMPIQV 392


>gi|163759228|ref|ZP_02166314.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica
           DFL-43]
 gi|162283632|gb|EDQ33917.1| DNA polymerase III, beta chain protein [Hoeflea phototrophica
           DFL-43]
          Length = 385

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 124/394 (31%), Positives = 214/394 (54%), Gaps = 26/394 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEI--EITGAIPA 59
           +T  R+ +L  +  A   +ER+NTIPV  ++LL+   D  L +  +  ++   +   + A
Sbjct: 7   LTAPRAALLAAVETALGAVERRNTIPVLANLLLESTADDGLRVSGTDLDVMTTVATGLDA 66

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                  +T+ AHLL+DI+RKL D A++S   +     ++ ++ G S F LQ+ P +++P
Sbjct: 67  EPRQYAGVTLPAHLLHDILRKLPDKAEVSLKTDG--SGQMTLTSGRSRFNLQTLPGADWP 124

Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +E+     +FE+ ++     +    FA++TEE RYYLNG++ H  +   +L  VATDG
Sbjct: 125 RLQEKTAPAATFEIPAAKFAAQLAAVGFAISTEETRYYLNGVYMHAIDN--RLVTVATDG 182

Query: 179 HRLAVAEVD----IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK--VSLSESRIHLNI 232
           HRLA A       ++     MP II+PRK VG + + L++        +++SE+ I   +
Sbjct: 183 HRLARAVYSAAVGVMPAADAMPGIIIPRKTVGLVAKALAAAAKDATLAIAVSENMISFEL 242

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            +  ++ +LIDG FP+Y+ VIP +N    R +   L QA +RVSI+SS R +AVK++   
Sbjct: 243 GATRIASKLIDGTFPDYERVIPIANPNSWRFDVAALLQATERVSIISSERGRAVKMAWGR 302

Query: 293 DKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           + + +TV NPD G+  + ++V  +    ++I FN KYL +++ ++S    V       L+
Sbjct: 303 ESIDLTVINPDAGEGQDQVSVDADTGEEVEIGFNAKYLADMLGHMSKSGSV------HLN 356

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +            D     D+++   +VLMPMR+
Sbjct: 357 TGGDPARFEPVHAD-----DDEIAMTFVLMPMRV 385


>gi|284051274|ref|ZP_06381484.1| DNA polymerase III subunit beta [Arthrospira platensis str. Paraca]
 gi|291566285|dbj|BAI88557.1| DNA polymerase III beta subunit [Arthrospira platensis NIES-39]
          Length = 393

 Score =  286 bits (733), Expect = 3e-75,   Method: Composition-based stats.
 Identities = 93/409 (22%), Positives = 198/409 (48%), Gaps = 42/409 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M++ VE+  +   L    R I  + + P+  ++L++A+     L + A    + I  + P
Sbjct: 1   MRLIVEQEQLSSNLSLVSRAIPSRPSHPILSNILVKADADTQQLSLTAFDLSMGINASFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V   G +T+ A LL DIV +L  G       + +    V ++     + ++     E+
Sbjct: 61  AQVQQGGVLTLPAKLLNDIVSRLPGGDI--EVNDEDTEAVVTLTSSSGRYQVRGMVAEEY 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +  +S +LA+  L   ++ T FA + +E +  L G+   + ++   LC  +TDG
Sbjct: 119 PELPSVQGEHSIQLAADSLLEGLKGTLFATSPDETKQVLAGVNLKVGKD--TLCFASTDG 176

Query: 179 HRLAVAEV----DIVAQIAKMPSIIVPRKAVGEILRILSSKDS---------------SV 219
           HRLAV +V    D  ++  +   I +P +A+ E+ R++ S +S                V
Sbjct: 177 HRLAVVKVENVRDPNSEEQEDLEITIPARALREVERMIVSANSGRHSTATEEEATTPLMV 236

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
            +   ++++  ++ +  ++ R ++G +P Y+ +IP     ++ V    L  A++R+ +++
Sbjct: 237 TLGFDDTQVVFDVGTRRLNSRKLEGAYPAYEQLIPNKFLSQVNVERRTLLGALERIGVLA 296

Query: 280 SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNI 336
           S +   VK  +   + ++ ++V+  D+G A+ESM    +   P ++ FN KYL++ +  +
Sbjct: 297 SQKNDIVKCIIDEVNQQISLSVEAADVGNALESMPAQISGEEPKELAFNVKYLMDGLKVL 356

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S      E+  +L+++++ V I         N    +   Y++MP+++
Sbjct: 357 NSS-----EIQIQLNAASTPVII---------NPLGGLKMTYLVMPIQL 391


>gi|332296671|ref|YP_004438593.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM
           12168]
 gi|332179774|gb|AEE15462.1| DNA polymerase III, beta subunit [Treponema brennaborense DSM
           12168]
          Length = 367

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 101/385 (26%), Positives = 190/385 (49%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T +R  +++ +  A  II  KN + +  +VL  A +  L IKA+  ++     IP  
Sbjct: 1   MRFTFDRDAMVKEIAIAQEIISTKNALSILSNVLFIAENNTLAIKATDIKVNFETKIPVV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G+ T+       I+  L  G +I F +E+   T   I      F L+S    +FP 
Sbjct: 61  IEEEGTTTIFCDKFMSILASLPPG-EIEFIQEDIKVTIKPI-SKKVKFQLKSMASDKFPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E V  F++ +   K ++ +T FA++ +E RY++NG+FF   +++L L  V+TDG R
Sbjct: 119 FSSAENVPYFDVPADQFKEMITQTIFAVSDDETRYFMNGVFFEKKDDNLNL--VSTDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA +   +   I   PS+IVP K +  +L+  +S +  + +++ +  I++   +   S  
Sbjct: 177 LAFSSKALCQGITDFPSVIVPPKVLTAVLK-RASSEGMISLAIVDKMIYIKFGNYHFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G+FPNYQ VIP +      +  ++L  A+ RV+++   + + V   L+   L +T  
Sbjct: 236 LLEGQFPNYQRVIPETQAHSFELQKSDLADALKRVALLVDQKARRVYFELNPGTLTITSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E +   Y+   + I  NY Y+ E +  ++      D + F       +V ++
Sbjct: 296 ESDIGVAKEEIPCQYDGETVTIAMNYLYIDEPMKVMNC-----DRIKFEFTEPMRAVTLK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                       + + F+++MPM++
Sbjct: 351 PV---------PESDYFHIIMPMQM 366


>gi|325475138|gb|EGC78323.1| DNA polymerase III [Treponema denticola F0402]
          Length = 367

 Score =  286 bits (733), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 102/384 (26%), Positives = 193/384 (50%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+ +R  +L+ +  A  II  K  + +  +VLL   DG L IKA+  ++     IP +
Sbjct: 1   MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       I+  L  G      K+ +L  +  +    + F L++ PE++FP+
Sbjct: 61  IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVK--KAKFQLKTIPENDFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V  F + +   K ++ +T F+++ +E RY++NG++    E+   L  VATDG R
Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIENKED--TLYFVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +    I +   +IVP K +  I +  +S + +++V + E  I  N  S   S  
Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILNIINK-RASDEGNIEVGIGEKNIFFNFNSYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ VIP + +    V+ T   +A+ RVS++  ++ + + L++    L ++  
Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G A E +   Y+   + +  NY Y+ + +  I+S     D +      +  ++ ++
Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITS-----DRIKVEFTEAMKAITLK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            + ++         + F+++MPM+
Sbjct: 351 PEPEE---------DFFHIIMPMQ 365


>gi|218291095|ref|ZP_03495118.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238980|gb|EED06187.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 374

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 90/374 (24%), Positives = 167/374 (44%), Gaps = 20/374 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++++  +   L    + +  +    V   +L++ ++  +   A   E+ I   +P  
Sbjct: 1   MEFSLQKQALANALQIVSKAVAVRTPKQVLMGILIEVHEDEIVATAYDLELAIQTRVPVG 60

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   G+I + A    DIVRKL D  +I    +    TE  IS     F+L    
Sbjct: 61  EETGLRVHKTGAIVLPARYFGDIVRKLPD-TEIHMRVDANYMTE--ISAQSVEFHLHGID 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP         S ++ +S L  L+E T FA AT E+R  L G+   I  +   L  +
Sbjct: 118 AEEFPELPNFMGYESMQIPASTLGRLIESTVFAAATSEVRPVLTGV--SITSDPTHLTFI 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG RLA   V           +++P K++ E+ +IL   ++ V++ L+ S     I  
Sbjct: 176 ATDGLRLAQHRVP--QADLPERQVVIPAKSLSELSKILPEDETPVEMVLTPSHGLFVIGP 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293
                RL++G +P+   +IP S   ++ +       A+DR ++++  +    V+L ++ D
Sbjct: 234 TRFYTRLLEGTYPDTSRLIPRSARTQVVLEGDAFLHAIDRAALIARDKDNHMVRLEVTGD 293

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            L +T  +P++G   E+++        + I FN +Y++E +  + +      E+  R + 
Sbjct: 294 TLTVTSHSPEVGNVSETLHALRKEGEDLQIAFNGRYVIEAVRALDAA-----EIAIRFNG 348

Query: 353 SNSSVFIRGKDKDS 366
           +N +  I      S
Sbjct: 349 ANQAFVIERSGDPS 362


>gi|332885445|gb|EGK05694.1| DNA polymerase III, beta subunit [Dysgonomonas mossii DSM 22836]
          Length = 374

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 182/372 (48%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  V  + +L  L    ++I  KNT+P+    LL+     L + A+  E  +  ++   
Sbjct: 1   MRFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLSLTAADSETRLVTSLEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D +++L D         + L T +   +G  NF        ++P
Sbjct: 61  EADGNGKFAVNAKNLLDPLKELPDQPLTFEINSDNLETFIFFHNGKYNFI--GQNGEDYP 118

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             K+  E   S  +   VL + + RT FA A +E+R  +NG++F I+ EDL    VA+DG
Sbjct: 119 QPKQLKETAVSLTIEPQVLFSGINRTLFASADDELRPVMNGVYFDISTEDLTF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+ A+  S I+P+K    +  IL  +  +V++   E+  ++ + S +M+
Sbjct: 177 HKL-VRCKTLSAKGAERASFILPKKPANLLRAILPKESETVEIKFDENNAYIKMSSYTMT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R I+G +PNY +VIP +N  ++ ++  +   A+ RVS+ S+     V+L LS   + ++
Sbjct: 236 CRFIEGRYPNYNSVIPQNNPNKVILDRLSFLNALKRVSVFSNQASNLVRLQLSDKNIIVS 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+++  Y   PM I F   +L++I++NI S +     +   L   + + 
Sbjct: 296 AQDIDFSTAAEETISCDYTGTPMSIGFKSSFLIDILNNIPSSD-----ISLELSDPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   + +   +
Sbjct: 351 LIIPAENEENED 362


>gi|189501610|ref|YP_001957327.1| DNA polymerase III subunit beta [Candidatus Amoebophilus asiaticus
           5a2]
 gi|189497051|gb|ACE05598.1| DNA polymerase III, beta subunit [Candidatus Amoebophilus asiaticus
           5a2]
          Length = 372

 Score =  286 bits (732), Expect = 4e-75,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 182/387 (47%), Gaps = 18/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++  S + + L      +     IP+  + L +  +G L+I AS  +  I   +   
Sbjct: 1   MKFSISSSTLYKHLVALYGAVVSNPLIPILENFLFEITNGKLKITASDLQTSIITELELD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    S+ V A +L D ++ L +      F  +E    ++I      + L     ++FP 
Sbjct: 61  VKGETSVAVPARILLDTLKNLPEQPI--SFYIDESVYSISIKSDTGQYNLAGENATDFPQ 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S +L + +LK  +++T  A + +E++  +NG++ +  E+      VATD HR
Sbjct: 119 IPEVAAKTSIQLPADILKRAIQQTIIATSHDELKPAINGMYMNFKEDA--FTFVATDIHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L     + +    + P  I+PRK +  +  +L +    V++S   + +H  I ++ M  R
Sbjct: 177 LIRYTRNNITAAEQAP-FILPRKTLMLLNGLLPTDKQEVEISFGSNNVHFKIANVRMVSR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+NVIP +N  +LR+N   L  ++ R+ I ++     VK +L    L +  +
Sbjct: 236 LIDERYPDYENVIPKNNPHKLRINRMALLTSLKRIIIYTNKITHQVKFTLGEQNLEILAE 295

Query: 301 NPDM-GKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +   KA E ++  Y     ++I FN K L+E+++N+ +     DEV F     N +  
Sbjct: 296 DFNFDNKAKEQLSCEYVGDASLEIGFNAKSLIEMLNNLQA-----DEVNFHFSQPNKAAV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D++         +   ++MP+ +
Sbjct: 351 IIPNDQE------EGEDILLLIMPITL 371


>gi|323357955|ref|YP_004224351.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum
           StLB037]
 gi|323274326|dbj|BAJ74471.1| DNA polymerase sliding clamp subunit [Microbacterium testaceum
           StLB037]
          Length = 383

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 167/392 (42%), Gaps = 24/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R    E +    +++ ++N  P+   VL++AN+  L + A   E      I A+
Sbjct: 1   MKFHVNRDVFSEAVSFVVKLLPQRNPQPILAGVLIEANEQGLTLAAFDYEASARTTIEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+I V   LL DI  +L +        E+     + ++ G + F L S P  E+P+
Sbjct: 61  VDEPGTILVHGRLLSDIASRLPNAPIQIAVDEDGG---ILLTCGSARFTLASMPVQEYPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E          +      + +  FA + +++   L G+   ++    +L  VATD +R
Sbjct: 118 IPEVTGESGLV-PADEFATAIAQVAFAASRDDVTPVLTGVQLEVSGT--RLSLVATDRYR 174

Query: 181 LAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIE 233
           +A+ E+          +  S +VP + + E+ +  +     + ++ S S     I     
Sbjct: 175 VALREIPWDGGQAASDETTSALVPARTLQEVGKTFAHG-GDISIAFSGSGDREIIAFTAA 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           + +++  LI G FP  + + P   +    VN   L +AV RV+++   R   ++ +  +D
Sbjct: 234 NKTVTSLLIKGNFPPVRRLFPEQTEHHSVVNTAELAEAVRRVALVL-DRSAPLRFTFGAD 292

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + M     +  +A E+++       + +  N +YLLE +  + S+      + F    +
Sbjct: 293 GVSMDASGTEQARATETVDATLVGDEVTLGLNPQYLLESLGAVRSEFT---RITFTSSDN 349

Query: 354 N---SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
               S V +  +   +  +K  +    Y+L P
Sbjct: 350 ANKLSPVLVTPQ---TSVDKGGEGTFKYLLQP 378


>gi|300172304|ref|YP_003771469.1| DNA polymerase III subunit beta [Leuconostoc gasicomitatum LMG
           18811]
 gi|299886682|emb|CBL90650.1| DNA polymerase III, beta subunit [Leuconostoc gasicomitatum LMG
           18811]
          Length = 377

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 84/394 (21%), Positives = 171/394 (43%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   ++ L    R I  + TIP+  ++ +      L +  S  +I I   I  S
Sbjct: 1   MQFSINRQAFIKALNDVSRAISSRTTIPILTNIKIVLTQEELILTGSNSDISIETRIDQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV+ L              G   +I+ G S+F +   
Sbjct: 61  DTGAQLIIKQPGGITLLATFFSNIVKNLPADDMTLSVD----GVRASITSGASDFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  A
Sbjct: 117 DVHNYPQLPEMDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +    A     +I+P K+  E+  +L  +D  V++ L+ ++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGTDAHVKADVIMPAKSFNELQSLLEGQD-RVEIKLAANQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            + +   RL++G +P    +IP  +  +L +  + L  A++R S++S   R   V+L+L 
Sbjct: 234 GNTTFYSRLLEGNYPETDRLIPTESTTQLTIEASALLGAINRASLLSHESRNNVVQLTLK 293

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +  + +   + ++G+  E +         ++I FN  Y+ + +   +   V       + 
Sbjct: 294 NGVVTLIGTSQEVGRVQEELVTKSVEGEDLEISFNPDYVRDALRVFNGKSVD-----IKF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     +    +              ++ P+R
Sbjct: 349 TSNLRPFTLTPAGETDDKQ-------LQLITPVR 375


>gi|168335259|ref|ZP_02693360.1| DNA polymerase III subunit beta [Epulopiscium sp. 'N.t. morphotype
           B']
          Length = 390

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 97/387 (25%), Positives = 188/387 (48%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++ + + +    +    ++T P+   +L+ A +  L +  +  E+ I   I   
Sbjct: 23  MKFICNQNILAQAINIVIKACATRSTNPLLECILITATNTTLTLMGNNLEMGIEKTIEGE 82

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I++K+  G  I     NE  T++ I+ G S F LQ+   S FP+
Sbjct: 83  ILENGKIAIDAKLFSEIIKKMPQG-DIKMATINE--TQITITSGKSRFTLQTLDTSHFPT 139

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  ++   LKNL+++T F++A EE R  L G  F +  E+ +L  VA DG  
Sbjct: 140 LPDVSLKQSLTISQLELKNLIKQTIFSVAQEESRPTLTGEKFEV--ENGQLSLVAIDGFX 197

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A   + +  +   +  +I P K + EI +ILS++ +  V +   E+ I  N+   ++  
Sbjct: 198 IAFRTISLNNKNLSIEKVI-PAKTLMEITKILSNENNDEVTICFGENHILFNLIDTTIVS 256

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
            L++GEF  Y+++     + ++ VN      +++R ++MS       ++ +++ D L +T
Sbjct: 257 XLLEGEFLRYKDIFSNDFETKIIVNRNEFLMSIERSALMSKEGGKNPIRFNITQDTLIIT 316

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D+G ++E +++     P+ I FN +YL++ + NI      DDE+     S  +   
Sbjct: 317 S-NTDIGNSLEEIDIILTGMPLKIAFNPRYLIDALKNIE-----DDEICINFLSKTAPAV 370

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + D            Y+++P+R+
Sbjct: 371 IMPINSD---------KYRYLVLPIRV 388


>gi|268628357|gb|ACZ13577.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628359|gb|ACZ13578.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628361|gb|ACZ13579.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628363|gb|ACZ13580.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
 gi|268628365|gb|ACZ13581.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           kayaii]
          Length = 276

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|170016360|ref|YP_001727279.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20]
 gi|169803217|gb|ACA81835.1| DNA polymerase III, beta subunit [Leuconostoc citreum KM20]
          Length = 377

 Score =  286 bits (732), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 89/394 (22%), Positives = 171/394 (43%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   ++ L    R I  + TIP+  ++ +  ++  L +  S  +I I   I  S
Sbjct: 1   MQFSINRQAFIKSLNDVARAISSRTTIPILTNIKIVLSEDELILTGSNSDISIETRIEQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV+ L     +        G   NI+ G S F +   
Sbjct: 61  DTTAQLVIKEKGGITLPATFFANIVKNLPADDLMLAVD----GLRANITSGASAFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  A
Sbjct: 117 DVRNYPQLPEMDDVQSLSVSAAQLIDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +    A     +I+P K+  E+  +L  +D  V + LS ++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGTEAHVSADVIIPAKSFNELQSLLEGQD-RVDIKLSANQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
              +   RL++G +P    +IP  +  EL ++   L  A++R S++S   R   V+L+L 
Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTELTMDAGALLGAINRASLLSHESRNNVVQLTLK 293

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +    +T  + ++G+  E +         ++I FN  Y+ + +   S   V       + 
Sbjct: 294 AGVATLTGTSQEVGQVQEELVTKSVAGEDLEISFNPDYVRDALRVFSGKPVD-----VKF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     +    +              ++ P+R
Sbjct: 349 TSNLRPFTLTPAGETDNKQ-------LQLITPVR 375


>gi|153808234|ref|ZP_01960902.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185]
 gi|149129137|gb|EDM20353.1| hypothetical protein BACCAC_02522 [Bacteroides caccae ATCC 43185]
          Length = 374

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 175/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +      F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQP--LTFLINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + VL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  SV +   E      ++S  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGSVTIEFDERNAVFMLDSYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPVEQEENED 362


>gi|261368843|ref|ZP_05981726.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM
           15176]
 gi|282569113|gb|EFB74648.1| DNA polymerase III, beta subunit [Subdoligranulum variabile DSM
           15176]
          Length = 369

 Score =  285 bits (731), Expect = 5e-75,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 183/386 (47%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   E+S +   +    R I  ++ IPV   + L+A    L +     E+ IT  I  +
Sbjct: 1   MKFECEKSLLASAIEGVSRAITNRSAIPVLEGIYLKAEGFNLTLTGYDMEMGITTTIECN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V V G   + A LL  +V ++  G       +     +  IS G + F + +   S++PS
Sbjct: 61  VLVPGETVLEAKLLLSMVSRMPAGDVRIELTDE---GQAIISGGVAEFEIPALNASDYPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + +S+++ L+E+T +A++ ++ +    G  F I    L +  VA DG+R
Sbjct: 118 LPVTGADNTMTIPTSMMRELIEKTIYAVSQDDKKPAHTGELFVIEPGSLTI--VALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ + D+  +  +   II+P K + E+L+I+   D  VK+  +   +       ++  R
Sbjct: 176 LAIIQRDV--ECTRDIRIIIPAKTLQELLKIMGGPDDPVKIDANRRYVVFTTNGYTIMSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           LI+G+F NY++VIP  N   + V+C      ++R S++ + R    +++S + DK+ +  
Sbjct: 234 LIEGDFLNYESVIPKDNRTRVTVDCKTFINTIERASLIITERLKNPLRISFAEDKITVRC 293

Query: 300 DNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             P +GK ++    V     P++I FN +YLL+ +          + +V  ++   S V 
Sbjct: 294 QTP-LGKVVDEFPPVAMTGDPVEIGFNNRYLLDAMRYSKC-----ERMVLEINGPLSPVK 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I  +D           +  Y+++P+R
Sbjct: 348 ILPED---------GKDFIYLVLPVR 364


>gi|298246028|ref|ZP_06969834.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM
           44963]
 gi|297553509|gb|EFH87374.1| DNA polymerase III, beta subunit [Ktedonobacter racemifer DSM
           44963]
          Length = 379

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 95/394 (24%), Positives = 173/394 (43%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ D+   L      +  ++T+P+  ++LL  + G L++ A+  EI I   I A 
Sbjct: 1   MKIICKQQDLSRGLSTVSHAVSSRSTLPILANILLTTDHGRLKLSATNLEIGINCWIDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   GS TV A  + D+V  L     ++S   E+     ++I    SN  ++    SEFP
Sbjct: 61  VQEEGSTTVPAKTISDLVSSLRPSQVELSVADESHT---MSIKGQGSNATIKGMDPSEFP 117

Query: 120 STKEEEY-VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                E       L +  LK ++E   FA A ++ R  L G+      E  KL   A D 
Sbjct: 118 LIPSAEGSETPIALDAHQLKEMIEYVAFAAADDDTRPVLTGVHVETTNE--KLTFAAADA 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSM 237
            RLAV    +        +I++P + + E+ RIL ++ S  + V+ + S++  + +++ +
Sbjct: 176 FRLAVMSAPMPGGDLLADTILIPARTLTELARILPNEGSVQMIVTPNRSQVLFHTDNVDL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--- 294
             RLI+G FPN++ +IP  +     V       AV  V+  +       ++ ++S     
Sbjct: 236 VSRLIEGTFPNFRGIIPKEHTTRAVVETKEFSAAVKTVTPFARDSSNIARVKVNSGSEDG 295

Query: 295 -----LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                L +     D+G  + ++N   +    +I FN KYL +++  + +      EV   
Sbjct: 296 NETGTLTIEATAEDIGSNVSTINAAVDGPEQEIIFNVKYLSDVLGVVGT-----PEVALE 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           + S+     ++              +  Y++MPM
Sbjct: 351 ITSAARPGVVKPVGP---------ADYTYIIMPM 375


>gi|206900545|ref|YP_002251261.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12]
 gi|206739648|gb|ACI18706.1| DNA polymerase III, beta subunit [Dictyoglomus thermophilum H-6-12]
          Length = 367

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 184/389 (47%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ++ D+ + L      +  K TIP+  +V ++A +  L ++ +  E+ +  ++P  
Sbjct: 1   MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEVGLALSMPVI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + A L  D++ KL +   ++            I  G S+  +Q     EFP 
Sbjct: 61  VEEPGEVCLPASLFIDVIGKLPE---VTLEVYVNERNRAIIHAGYSDIEIQGESPEEFPK 117

Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +      Y   L   +    +++T FA A +EI+  L G+ F    +D KL  VA DGH
Sbjct: 118 VEVGNITEYHASLDRILFAKAIKQTIFAAAEDEIKQVLTGVLFE--GKDGKLNMVAVDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA+  ++I       PSIIVP K++ E  +I++   +  V ++  ++++  N   +   
Sbjct: 176 RLALKTLEIDK---DFPSIIVPAKSLKEWQKIITKALEDRVNIAALDNQVVFNCGEIYFI 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
            RL+ G+FP Y  +IP       + N  +    ++R+ + +   +   VK+SLSS+++ +
Sbjct: 233 SRLLQGQFPAYDKIIPTEFTASFKANRKDFLDILERMEVFAEIDQTNTVKISLSSEEVVI 292

Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +    + G A E +    N +  ++I FN +YL++ +DN        DE+V +  S    
Sbjct: 293 STLPSERGFAKEVLPAEVNIDGNLEIGFNVEYLMDPLDNAD-----WDEIVMKFTSDLGP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I   + +         N  Y+LMP+R+
Sbjct: 348 ALITSPEDE---------NYTYILMPVRL 367


>gi|309804912|ref|ZP_07698974.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|309809746|ref|ZP_07703600.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN
           2503V10-D]
 gi|308165851|gb|EFO68072.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           09V1-c]
 gi|308169925|gb|EFO71964.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN
           2503V10-D]
          Length = 376

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|296110745|ref|YP_003621126.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii
           IMSNU 11154]
 gi|295832276|gb|ADG40157.1| DNA-directed DNA polymerase III, beta chain [Leuconostoc kimchii
           IMSNU 11154]
          Length = 377

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 172/394 (43%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   +++L    R I  + TIP+  +V +  ND  L +  S  +I I   I  S
Sbjct: 1   MQFSINRQAFIKILNDVSRAISSRTTIPILTNVKIVLNDEELVLTGSNSDISIESRIDQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV+ L              G   +I+ G S+F +   
Sbjct: 61  DTSAQLVIKETGGITLPATFFSNIVKNLPADHMTLAVD----GVRAHITSGASDFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E   V +  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  A
Sbjct: 117 DVRNYPQLPEMTDVQTLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174

Query: 174 VATDGHRLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +   +      +I+P K+  E+  +L  +D  V + L+ ++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGTETTVNADVIIPAKSFNELQSLLEGQD-RVDIKLAANQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
              +   RL++G +P    +IP  +  +L +  + L  A++R S++S   R   V+L+L+
Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTQLTIEASTLLGAINRASLLSHESRNNVVQLTLA 293

Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              + +T  + ++G+  E +         ++I FN  Y+ + +   S   V       + 
Sbjct: 294 DGVVTLTGTSQEVGRVQEELATTSVEGENLEISFNPDYVRDALRVFSGKPVD-----VKF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     +    +              ++ P+R
Sbjct: 349 TSNLRPFTLTPAGETDDKQ-------LQLITPVR 375


>gi|167762355|ref|ZP_02434482.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC
           43183]
 gi|167699998|gb|EDS16577.1| hypothetical protein BACSTE_00709 [Bacteroides stercoris ATCC
           43183]
          Length = 374

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 178/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +  +
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +      F  N    E+ + + +  + L      EFP
Sbjct: 61  DSDADGRFAVTAKTLLDALKEIPEQP--LTFDINTSSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    E     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGENAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E    + +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPANLMKNLLPKEQGTVTIEFDERNAVVTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLIGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y   PM I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQTCQYAGNPMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPAEQEENED 362


>gi|117927213|ref|YP_871764.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B]
 gi|117647676|gb|ABK51778.1| DNA polymerase III, beta subunit [Acidothermus cellulolyticus 11B]
          Length = 387

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 91/400 (22%), Positives = 171/400 (42%), Gaps = 30/400 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V+R    + +  + R +  + ++PV   +L++A D  L I +   E+  + +I A+
Sbjct: 1   MRFQVDRGLFADAVAWSARTLPARPSMPVLGGLLIEAMDE-LRIASFDYEVSASASIDAT 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G   VS  LL +I R L              G+ + I+ G S F L   P  E+P+
Sbjct: 60  IAETGRALVSGRLLAEISRNLPAQP----VDVELDGSRLVIACGASRFTLPLLPIEEYPN 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + + +    V +   A   ++    L G+   I+ + + L   ATD +R
Sbjct: 116 LPPLP-TLAGTIGADLFATAVSQVVVAAGRDDTLPVLTGVRMEIDRDVMTL--AATDRYR 172

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS------ESRIHL--- 230
           LAV +            + ++P + +GE+ + L++  + V + LS      E+ I     
Sbjct: 173 LAVRDFHWQPARGDLTAAALIPARTLGEVAKALTTG-AEVTIFLSTESTSNENLIGFSGR 231

Query: 231 -NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                   + RLIDGE+  Y++++P       +V    L +AV RVS+++  R   V+L+
Sbjct: 232 GTSGERQTTTRLIDGEYVKYRSLLPAEAAATAQVATAALIEAVRRVSLVA-PRTSPVRLT 290

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYN----ECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            + D+L +     D  +A E ++  +     +    I FN  YLL+ +  + S+      
Sbjct: 291 FNPDRLTLEAGTGDDAQASEWIDARFESSTGDDEFVIAFNPAYLLDGLGAVESETT---- 346

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 S N    +R       +      +  Y+LMP+R+
Sbjct: 347 -TLSFTSPNKPAVLRAGKDADTSADAGSDDYRYLLMPVRL 385


>gi|227539239|ref|ZP_03969288.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300770712|ref|ZP_07080591.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium
           spiritivorum ATCC 33861]
 gi|227240921|gb|EEI90936.1| DNA-directed DNA polymerase [Sphingobacterium spiritivorum ATCC
           33300]
 gi|300763188|gb|EFK60005.1| DNA-directed DNA polymerase III beta subunit [Sphingobacterium
           spiritivorum ATCC 33861]
          Length = 374

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 178/386 (46%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L            +P+  + L +  D  L I A+  +  +  ++   
Sbjct: 1   MRFIVSTSILLKQLQAISGASSSSTVLPILENFLFEIKDNTLTISATDLQTSMVTSLQIE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + + + +L + ++ L D         N L  E  IS GD  + L      +FP 
Sbjct: 61  SKEEGRVAMPSKILIETLKTLPDQPVAFSVDTNTLAIE--ISAGDGKYKLSGENADDFPK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   +  + + VL   + +T FA++ +E+R  ++G+   + E+      V+TD H+
Sbjct: 119 IPTVDNTSTVNIPAPVLAEAINKTIFAVSNDELRPAMSGVLVQLAEQSTTF--VSTDAHK 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L V          K  S+I+P+KA+  +   L S D +V +  + +       ++ +  R
Sbjct: 177 L-VRYRRTDIYTDKPASLILPKKALSLLKSSLPSDDVNVTIEYNNTNAFFQFGNIFLICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y+ VIP  N  +L V+ +     + RV I ++     V+L +S  +L ++ +
Sbjct: 236 LIDERYPDYEAVIPQVNPNKLTVDRSLFLNTLRRVVIFANKTTHQVRLRISGSELNISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A E ++  +    M+I FN K+L+E+++N+SS     +EV+  + + N +  +
Sbjct: 296 DLDFSNEAHERLSCQFEGDDMEIGFNAKFLVEMLNNLSS-----EEVIIEMSTPNRAGLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     KD+  +   ++MP+ +
Sbjct: 351 IPA------IKDDNEDILMLVMPVML 370


>gi|160882257|ref|ZP_02063260.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483]
 gi|237718359|ref|ZP_04548840.1| DNA polymerase III [Bacteroides sp. 2_2_4]
 gi|293372862|ref|ZP_06619236.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f]
 gi|299146574|ref|ZP_07039642.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23]
 gi|156112346|gb|EDO14091.1| hypothetical protein BACOVA_00203 [Bacteroides ovatus ATCC 8483]
 gi|229452292|gb|EEO58083.1| DNA polymerase III [Bacteroides sp. 2_2_4]
 gi|292632151|gb|EFF50755.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CMC 3f]
 gi|298517065|gb|EFI40946.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_23]
          Length = 374

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 177/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +      F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQP--LTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ +SVL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|268628293|gb|ACZ13545.1| DNA polymerase III beta chain [Xenorhabdus beddingii]
          Length = 276

 Score =  285 bits (731), Expect = 6e-75,   Method: Composition-based stats.
 Identities = 103/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  A     G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLAQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|262183096|ref|ZP_06042517.1| DNA polymerase III subunit beta [Corynebacterium aurimucosum ATCC
           700975]
          Length = 393

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 86/399 (21%), Positives = 171/399 (42%), Gaps = 30/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K T PV   +L+ A+D  LE      E+     I   VD
Sbjct: 7   FRVAKDDLANAVAWVARSLPSKVTQPVLRAMLITADDNGLEFTGFDYEVSTRVRIAGMVD 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  LL DIV  L +  +I   +E+    +V +  G S F L   P  ++P   
Sbjct: 67  EPGRIAVAGKLLSDIVASLPN-KEIEMTQED---NKVLLICGSSRFELPLIPLDDYPQLP 122

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +    + +   A   ++    L G+   IN   +++   ATD  RLA
Sbjct: 123 VLPEVTGTINPQ-LFVEAISQVVAAAGKDDTLPMLTGVHIDINGSHVEM--TATDRFRLA 179

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           +   +     + + + ++VP K + E  R L +  +  V++++        E    L+ +
Sbjct: 180 MRTFEWEPVSSDVQAKLLVPAKTLQETGRSLDTHLNIPVEIAVGTGENIAAEGLFGLHAD 239

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN   ++P ++     +    L++A+ RVS+++  R   +++  S  
Sbjct: 240 NRETTTRMLDADFPNVAPLLPKTHSAMASIEVAPLQEAIRRVSLLT-DRNAQIRMEFSEG 298

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ +     D G+A E++   +N      I FN  YL + +  + ++      VVF    
Sbjct: 299 EVTL-AAGADSGRASETLPCAFNGREDFVIAFNPSYLKDGLAVVHTN-----RVVFGFTE 352

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++     ++      + +  Y+LMP+R+
Sbjct: 353 PSRPAIMIPEPEELPAANEDGSFPTPETDFTYLLMPVRL 391


>gi|227549438|ref|ZP_03979487.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
 gi|227078515|gb|EEI16478.1| DNA-directed DNA polymerase [Corynebacterium lipophiloflavum DSM
           44291]
          Length = 406

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 170/399 (42%), Gaps = 29/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+ + +    R +  KNT PV   +++ A+D  LE      E+     I A V 
Sbjct: 19  FRVHKEDLSDAVAWVARSLPTKNTQPVLRAIVITADDSGLEFAGFDYEVSSRVRIGAEVS 78

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G + V+  L+ DIV  +         + +  G+++ +  G + F L   P  ++P   
Sbjct: 79  QPGRVAVAGKLMADIVANMPAKPM----EVSTDGSKMLLQGGSARFELPLMPLDDYPQLP 134

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V      S+ +   V +   A   ++    L G+   I+   L+L   ATD  RLA
Sbjct: 135 TLPEVTGRISPSAFVG-AVTQVASAAGRDDTLPMLTGVHMEISGNALQL--TATDRFRLA 191

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSK-DSSVKVSL-------SESRIHLNIE 233
           +  +        + + ++VP K + +  R L +  +  V++++        +    L+  
Sbjct: 192 IRRLQWEPASDDVEAKLLVPAKTLLDNARTLDTHVEEPVEIAVGAAGNVGGDGLFGLHSG 251

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN Q ++P ++     V    L +A+ RVS+++  R   V++     
Sbjct: 252 NRETTTRMLDADFPNIQPLLPKTHTSMASVEIAPLVEAIRRVSLVA-DRNAQVRMHFHPG 310

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ +     D G+A E++   ++    + I FN  YL + +  I ++      VVF    
Sbjct: 311 EVTLHASGADSGEASETVAAAFSGADELLIAFNSGYLKDGLAVIGTN-----RVVFGFTE 365

Query: 353 SNSSVFIRGKDKDSKNNKDNK------VNAFYVLMPMRI 385
           ++    +  + +     + +        +  Y+LMP+R+
Sbjct: 366 ASRPAIMIPEPEQLPEAEADGTFPTPATDFTYLLMPVRL 404


>gi|160941460|ref|ZP_02088795.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC
           BAA-613]
 gi|158435606|gb|EDP13373.1| hypothetical protein CLOBOL_06351 [Clostridium bolteae ATCC
           BAA-613]
          Length = 372

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 172/385 (44%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  I+  +    + +  K T+ +   +L+ A+   +++  +  E+ I   +   
Sbjct: 1   MKLRFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTNEIKLTGNDMELGIETRVEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I R+L      S   E++      IS  +S F +Q     EF  
Sbjct: 61  ILEHGKIALDAKLFSEITRRL-SSENASVTIESDDKFNTTISCENSVFNIQGRDGEEFAY 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++++T F+++  +    + G  F +NE  LK+  V+ DGHR
Sbjct: 120 LPYIEKDKYICLSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--VSLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +         +IVP K + E+ +IL    +  V +  S + I    ++  +  
Sbjct: 178 ISIRKVRLKDHYEDT-KVIVPGKTLSEVSKILGGDNEKEVLIYFSTNHILFEFDNTIVVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++ VN       ++R +I+      + + +++  + + + 
Sbjct: 237 RLIEGEYFRISQMLSSDYETKVSVNKKEFLDCIERATILIRENDKKPLIINIGDNSMELK 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     + ++     + I FN K+L++ +  I      D+E+   + +  S  F
Sbjct: 297 LNSS-FGSMNADLMIHKTGKDIMIGFNPKFLIDALRVID-----DEEINIYMMNPKSPCF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD + N  Y+++P+
Sbjct: 351 I----------KDEEENYIYLILPV 365


>gi|325912232|ref|ZP_08174629.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D]
 gi|325475891|gb|EGC79060.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 143-D]
          Length = 376

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP  
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  EDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 VIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|89898369|ref|YP_515479.1| DNA polymerase III subunit beta [Chlamydophila felis Fe/C-56]
 gi|89331741|dbj|BAE81334.1| DNA polymerase III beta chain [Chlamydophila felis Fe/C-56]
          Length = 366

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 184/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I   D  +  V TDG R
Sbjct: 118 LPDIQNSIRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTIA--DGMVTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    +     IVP KAV E++++  S+DS   + L +++I +   +  +  +
Sbjct: 176 LAKTDTEISLDKSFAGDYIVPIKAVEEMIKLC-SEDSEATIFLDQAKIAVECGNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK + +  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|259500776|ref|ZP_05743678.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           DSM 13335]
 gi|259167470|gb|EEW51965.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           DSM 13335]
          Length = 380

 Score =  285 bits (730), Expect = 7e-75,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 5   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 65  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 121

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 179

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 300 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 354

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 355 PLRPFVVVPKDSDEK--------FIQLITPVR 378


>gi|161506636|ref|YP_001576584.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571]
 gi|160347625|gb|ABX26299.1| DNA polymerase III Beta chain [Lactobacillus helveticus DPC 4571]
 gi|323465559|gb|ADX69246.1| DNA polymerase III Beta chain [Lactobacillus helveticus H10]
          Length = 376

 Score =  285 bits (730), Expect = 8e-75,   Method: Composition-based stats.
 Identities = 94/392 (23%), Positives = 170/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   D  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +F ++    + ++  T FA + ++ R  L G+ F  N  ++K  AVAT
Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VK+   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++ + R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        + I FN  Y+ + +        V D VV     
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRA-----SVTDSVVMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I     D +           ++ P+R
Sbjct: 351 PLRPFIINPGKDDIE--------FVQLITPVR 374


>gi|239624132|ref|ZP_04667163.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47_FAA]
 gi|239520518|gb|EEQ60384.1| conserved hypothetical protein [Clostridiales bacterium 1_7_47FAA]
          Length = 372

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 82/385 (21%), Positives = 174/385 (45%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  I+  +    + +  K T+ +   +L+ A+ G +++  +  E+ I   +   
Sbjct: 1   MKLIFQKDAIVNGINIVMKAVPSKTTMSILECILIDASTGEIKLTGNDMELGIETKVEGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I R+L      S   E++      IS  +S F +Q     EF  
Sbjct: 61  ILEHGKIALDAKLFSEITRRL-SSENASVTIESDDKFNTTISCENSVFNIQGRDGEEFAY 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L+   LK ++++T F+++  +    + G  F +NE  LK+  V+ DGHR
Sbjct: 120 LPYIEKDKYICLSQFTLKEVIQQTIFSISPNDSNKMMAGELFEVNENQLKV--VSLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +         +IVP K + EI +IL    +  V +  S + I    ++  +  
Sbjct: 178 ISIRKVRLKDHYDDT-KVIVPGKTLSEISKILGGDNEKEVLIYFSANHILFEFDNTVVVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    + ++ VN       ++R +I+      + + +++  + + M 
Sbjct: 237 RLIEGEYFRINQMLSSDYETKVSVNKKEFLNCIERATILIRENDKKPLIINIGDNSMEMK 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +++   G     + ++     + I FN K+L++ +  I      D+E+   + +  S  F
Sbjct: 297 LNSS-FGSMNADLMIHKTGKDIMIGFNPKFLIDALRVID-----DEEINIYMMNPKSPCF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ N  Y+++P+
Sbjct: 351 I----------KDDEENYIYLILPV 365


>gi|268628367|gb|ACZ13582.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           laumondii]
          Length = 276

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|53714271|ref|YP_100263.1| DNA polymerase III subunit beta [Bacteroides fragilis YCH46]
 gi|60682327|ref|YP_212471.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC
           9343]
 gi|253564787|ref|ZP_04842243.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5]
 gi|265766237|ref|ZP_06094278.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16]
 gi|52217136|dbj|BAD49729.1| DNA polymerase III beta chain [Bacteroides fragilis YCH46]
 gi|60493761|emb|CAH08551.1| putative DNA polymerase III beta chain [Bacteroides fragilis NCTC
           9343]
 gi|251946252|gb|EES86629.1| DNA polymerase subunit III beta [Bacteroides sp. 3_2_5]
 gi|263253905|gb|EEZ25370.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_16]
 gi|301163801|emb|CBW23356.1| putative DNA polymerase III beta chain [Bacteroides fragilis 638R]
          Length = 374

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L Q  DG L +  S  E  +  ++   
Sbjct: 1   MKFIVSSTALFSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +       K +    E+ + + +  + L      EFP
Sbjct: 61  ESDSNGKFAVAAKTLLDALKEIPEQPLTFDIKPDTY--EITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + +L   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLMGALRRVSIFSSQASSLIKLRMQENQIVVS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|255690065|ref|ZP_05413740.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565]
 gi|260624342|gb|EEX47213.1| DNA polymerase III, beta subunit [Bacteroides finegoldii DSM 17565]
          Length = 374

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 174/372 (46%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +      F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQP--LTFDVNPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + VL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAEVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGMVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  +L V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKLTVDRQQLMGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     DEV+  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|315654132|ref|ZP_07907048.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           ATCC 55195]
 gi|315488828|gb|EFU78474.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus iners
           ATCC 55195]
          Length = 380

 Score =  285 bits (729), Expect = 9e-75,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 5   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 64

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 65  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 121

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 122 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 179

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 180 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 239

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 240 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 299

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 300 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 354

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 355 PLRPFVVVPKDSDEK--------FIQLITPVR 378


>gi|260173819|ref|ZP_05760231.1| DNA polymerase III, beta chain [Bacteroides sp. D2]
 gi|315922082|ref|ZP_07918322.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313695957|gb|EFS32792.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 374

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 177/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +      F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQP--LTFEINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ +SVL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGTVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     DEV+  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|257783817|ref|YP_003179034.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469]
 gi|257472324|gb|ACV50443.1| DNA polymerase III, beta subunit [Atopobium parvulum DSM 20469]
          Length = 366

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 182/387 (47%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S +   L    + I    T+P+   + L+A +G+LE+++S   I I   I A+
Sbjct: 1   MKFTVSQSALQTALDIVSKGIGSNTTLPILSGIYLKAFNGMLELQSSDLTISIKHQIAAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   VS  ++ +IV+ L D A      E      +++    S+F L +    ++  
Sbjct: 61  VEEEGETVVSGKVIQNIVKNLPDAAITFEGGE----RTLSVICQRSSFRLNTLSAHDWAQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     + EL S +L  +V++ +   + E  R  L GI   + +  ++L  VATD  R
Sbjct: 117 FPEFNLEKTCELPSQLLSTMVDKVYRVTSKEVSRPILQGISLTVEDNTIRL--VATDSFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV + +      +  SII+  +   ++L + S  +  V +  +++++     + +   R
Sbjct: 175 LAVCDSNTDTPAGESFSIIISGEVFHDVLSMRSMTE-KVLIGTTDNQVIFQFGNTTHISR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD--KLCMT 298
            I+G FP+Y+ ++P S    + +N  +   A+ RVS+++ +   +V+  + +D  ++ ++
Sbjct: 234 KIEGHFPDYKQLLPTSCTASVDINVEDFSAALKRVSVIA-LANPSVRFDVDADGKEVKLS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G++ E +        + I  NY Y+ + ++   S     D +   L   +    
Sbjct: 293 ASSPDQGESSEHIEAQIEGDSLSIALNYHYVFDCVNAAPSK----DLLRLELQGPSQPAI 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +          + KVN  Y+LMP+R+
Sbjct: 349 FKS---------NGKVNYLYLLMPVRL 366


>gi|329919782|ref|ZP_08276733.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G]
 gi|328937129|gb|EGG33557.1| DNA polymerase III, beta subunit [Lactobacillus iners SPIN 1401G]
          Length = 376

 Score =  285 bits (729), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|268628379|gb|ACZ13588.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           akhurstii]
          Length = 276

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S     G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSSPHAEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|42525749|ref|NP_970847.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405]
 gi|41815760|gb|AAS10728.1| DNA polymerase III, beta subunit [Treponema denticola ATCC 35405]
          Length = 367

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/384 (26%), Positives = 193/384 (50%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI+ +R  +L+ +  A  II  K  + +  +VLL   DG L IKA+  ++     IP +
Sbjct: 1   MKISFDRDTLLKEISIAQEIIATKTALTILSNVLLSVKDGSLTIKATDIKVSFETKIPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS TV       I+  L  G      K+ +L  +  +    + F L++ PE++FP+
Sbjct: 61  IIEEGSTTVFCDKFAGILSSLPAGEVEIEQKDQKLTIKSVVK--KAKFQLKTIPENDFPA 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V  F + +   K ++ +T F+++ +E RY++NG++    E+   L  +ATDG R
Sbjct: 119 FTEPTNVNFFNIPTKEFKEMIHQTIFSVSDDETRYFMNGVYIENKED--TLYFIATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +    I +   +IVP K +  I +  +S + +++V + E  I  N  S   S  
Sbjct: 177 LAHIKKNFGIPIPEFKGVIVPPKILNIINK-RASDEGNIEVGIGEKNIFFNFNSYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG+FPNY+ VIP + +    V+ T   +A+ RVS++  ++ + + L++    L ++  
Sbjct: 236 LIDGQFPNYERVIPENQNLSFEVSRTEFIEALKRVSLLVELKTRRIFLNILPGSLIISSQ 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G A E +   Y+   + +  NY Y+ + +  I+S     D +      +  ++ ++
Sbjct: 296 ENEIGSAREEIPCKYDGQEVMLALNYVYIEDPLKTITS-----DRIKVEFTEAMKAITLK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            + ++         + F+++MPM+
Sbjct: 351 PEPEE---------DFFHIIMPMQ 365


>gi|268628373|gb|ACZ13585.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           luminescens]
 gi|268628375|gb|ACZ13586.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           luminescens]
          Length = 276

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|268628377|gb|ACZ13587.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           hainanensis]
          Length = 276

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHAEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|329961133|ref|ZP_08299388.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057]
 gi|328532071|gb|EGF58881.1| DNA polymerase III, beta subunit [Bacteroides fluxus YIT 12057]
          Length = 374

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 100/372 (26%), Positives = 178/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   V+A  L D ++++ +      F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDMDGRFAVAAKTLLDALKEIPEQP--LTFEINTSSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + +L   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQILLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLMKNLLPKEQGNVTIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQLLTGALRRVSIFSSQASSLIKLRMQENLIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+     DEV+  L   + + 
Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|237715176|ref|ZP_04545657.1| DNA polymerase subunit III [Bacteroides sp. D1]
 gi|262408871|ref|ZP_06085416.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22]
 gi|294647647|ref|ZP_06725214.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a]
 gi|294810714|ref|ZP_06769362.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC
           1b]
 gi|298481745|ref|ZP_06999935.1| DNA polymerase III, beta subunit [Bacteroides sp. D22]
 gi|229445009|gb|EEO50800.1| DNA polymerase subunit III [Bacteroides sp. D1]
 gi|262353082|gb|EEZ02177.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_22]
 gi|292637013|gb|EFF55464.1| DNA polymerase III, beta subunit [Bacteroides ovatus SD CC 2a]
 gi|294442047|gb|EFG10866.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens SD CC
           1b]
 gi|295087705|emb|CBK69228.1| DNA polymerase III, beta subunit [Bacteroides xylanisolvens XB1A]
 gi|298271967|gb|EFI13538.1| DNA polymerase III, beta subunit [Bacteroides sp. D22]
          Length = 374

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 102/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELEDGTLSVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V A  L D ++++ +      F  N    E+ + + +  + L      EFP
Sbjct: 61  ESDTNGRFAVVAKTLLDALKEIPEQP--LTFDINPDNYEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ +SVL   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEASVLLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPATLLKNLLPKEQGAVTIEFDERNAVFMLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRQQLVGALRRVSIFSSQASSLIKLRMQENQIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     DEVV  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|301165373|emb|CBW24944.1| putative DNA polymerase III, beta chain [Bacteriovorax marinus SJ]
          Length = 371

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 116/389 (29%), Positives = 213/389 (54%), Gaps = 22/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +   D+   L     +++++N+ P+  + L++  +  L I A+  E+     I A 
Sbjct: 1   MKIRLHTEDLKSALNKVLSVVDKRNSRPILTYTLIETANDQLNISATDLEVSSKVVIKAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   V+A  ++DI+++L  G +I    +++  T + ++ GD ++ L  +   +FP 
Sbjct: 61  VDNPGKFCVNAKNIFDILKELP-GTEIELSLDDQSNT-LKLNCGDIHYSLLIYKADDFPH 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + V  F+L+S  L N++ +T +A+  +E R YLNGI+    E D KL AVATDGHR
Sbjct: 119 LVFNQDVNKFKLSSEQLANIINKTSYAVLNDETRLYLNGIYLQ--EIDSKLRAVATDGHR 176

Query: 181 LAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES-LS 236
           L++ E D+     +  +  II+PRK + EI +I  +  DS +++S+ ++ +++N ++   
Sbjct: 177 LSLLETDLSENNNETLINGIIIPRKGIFEIKKISETYPDSEIELSVDDTFLYVNAKNEYF 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +SVRLI  E+P YQ VIP      +  +  +   A+ R+ IMS+ +   V+L LS   + 
Sbjct: 237 LSVRLIAREYPKYQAVIPNKTTYTMTTDRNSFFDAIRRIKIMSNEKSNGVRLKLSDQTMT 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T ++P +G A+E+M V YN   M+I FN KYL++ + +       + E+   L++  S 
Sbjct: 297 LTANHPSLGDAMETMPVDYNGKEMEIGFNAKYLIDTLHSFD-----EGEISLELNNELSP 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I+          ++  N   ++MP+++
Sbjct: 352 IIIKS---------NSLPNYLGIIMPLKL 371


>gi|85857847|ref|YP_460049.1| DNA polymerase III subunit beta [Syntrophus aciditrophicus SB]
 gi|85720938|gb|ABC75881.1| DNA polymerase III, beta chain [Syntrophus aciditrophicus SB]
          Length = 372

 Score =  284 bits (728), Expect = 1e-74,   Method: Composition-based stats.
 Identities = 98/389 (25%), Positives = 191/389 (49%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++R   L+ +     I+ERK+T+P+  ++LL+  D  ++I A+  E+ +     A 
Sbjct: 1   MEFDIQRQVFLDGVQKTLGIVERKSTMPILGNLLLKTEDNQIKIVATDRELGLVADYEAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+IT+SA  L++++R++Q  +      +++   ++ +S   + + +      EFP+
Sbjct: 61  IISSGAITLSAKKLFEMIREIQGDSIHFSCDDHD---QITLSSQKAVYRIPGISADEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
              +E +  + + +S+LK L+ +  FA++ +E R  L G        E+   L  VATDG
Sbjct: 118 VAYDENLPLYPVPASLLKELISKISFAISNDETRKNLTGALMEAEPGEQGTILRMVATDG 177

Query: 179 HRLAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRLA +   I           II+PRK + EI +++ ++   + +        L   +  
Sbjct: 178 HRLARSYEVIEGNSPFTLEKGIILPRKGISEIRKLIDAEQGEILIGSERGMFVLKTANTL 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + V LID  +P+Y  VIP      +  N   L   + R+ ++S+ +   V L+L+++++ 
Sbjct: 238 LKVSLIDETYPDYTRVIPSQQGVRVIFNHDLLLHGLRRMKVISTEQYSGVVLTLNNNRMI 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           M   NPD+G+A + + V Y    + + FN  YL++ I+ I      ++EV+F + S    
Sbjct: 298 MNSTNPDVGEANDELEVAYQGEEVKVGFNVDYLIDAIEVIR-----EEEVLFDIGSFMKP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I     D             V+MP+++
Sbjct: 353 SMIMPVHND---------RFLCVVMPLKL 372


>gi|302190773|ref|ZP_07267027.1| DNA polymerase III, beta chain [Lactobacillus iners AB-1]
 gi|309807871|ref|ZP_07701803.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|312872661|ref|ZP_07732726.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|325913673|ref|ZP_08176035.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B]
 gi|308168973|gb|EFO71059.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           01V1-a]
 gi|311091703|gb|EFQ50082.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF
           2062A-h1]
 gi|325477032|gb|EGC80182.1| DNA polymerase III, beta subunit [Lactobacillus iners UPII 60-B]
          Length = 376

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|332829626|gb|EGK02272.1| DNA polymerase III, beta subunit [Dysgonomonas gadei ATCC BAA-286]
          Length = 374

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 103/372 (27%), Positives = 179/372 (48%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +L  L    ++I  KNT+P+    LL+     L + A+  E  +  ++   
Sbjct: 1   MKFVVSSTALLSHLQAISKVINSKNTLPILDCFLLELEGSTLTLTAADAETRLVTSLEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D +++L +         + L T +   +G  NF        ++P
Sbjct: 61  EADGNGKFAVNAKNLLDPLKELPEQPLTFEINNDNLETFIFFHNGKYNFI--GQSGDDYP 118

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             KE  E   S  +   VL   + RT FA A +E+R  +NG+FF I  EDL    VA+DG
Sbjct: 119 QPKELKETAVSLTIEPQVLFAGINRTLFASADDELRPVMNGVFFDITPEDLTF--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+ A+  S I+P+K    +  IL  +  +V++   E+  ++ + S +M+
Sbjct: 177 HKL-VRCKTLSAKGAERASFILPKKPANLLKAILPKEAETVEIKFDENNAYIKMSSYTMT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R I+G +PNY +VIP +N  ++ ++      A+ RVS+ S+     +KL L+   + +T
Sbjct: 236 CRFIEGRYPNYNSVIPQNNTNKVILDRQTFLNALKRVSVFSNQASNLIKLQLTDRNIVVT 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM+I F   +L+EI++NI S +     +   L   + + 
Sbjct: 296 AQDIDFSTAAEETIACEYTGSPMNIGFKSSFLIEILNNIPSTD-----ISLELSDPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   + +   +
Sbjct: 351 LIIPTENEENED 362


>gi|291526545|emb|CBK92132.1| DNA polymerase III, beta subunit [Eubacterium rectale DSM 17629]
          Length = 370

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 180/385 (46%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   ++++L+ +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I  +
Sbjct: 1   MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I + A +  +IVRKL D        E +   +  IS   + F +      +F  
Sbjct: 61  IEERGIIALDAKIFSEIVRKLPDNDV---TIETDASFKTVISCEKAKFNIIGKSGDDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK ++ +T F++A  +    + G  F I E   KL  V+ DGHR
Sbjct: 118 LPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + EI +I+    D  V + ++ + I    E+ ++  
Sbjct: 176 ISIRYIEMKNHY-DSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    D ++R+N   L + +DR +++      + + ++++   + + 
Sbjct: 235 RLIEGEYFKIDQMLSSDYDTKVRINKRELLECIDRATLLVKEGDKKPIIMNITDGNMELR 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++  +   + I FN K+ ++ +  I      ++EV   + +  +  F
Sbjct: 295 I-NSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVID-----EEEVNLYMVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++    Y+++P+
Sbjct: 349 I----------KDDEGKFIYLILPV 363


>gi|326692340|ref|ZP_08229345.1| DNA polymerase III, beta subunit [Leuconostoc argentinum KCTC 3773]
          Length = 377

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 172/394 (43%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R   ++ L    R I  + TIP+  ++ +  +   L +  S  +I I   I  S
Sbjct: 1   MQFSINRQVFIKSLNDVSRAISSRTTIPILTNIKIVLSQDELILTGSNSDISIEKRIEQS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G IT+ A    +IV+ L              G   +I+ G S F +   
Sbjct: 61  DTSAQLVIGSTGGITLPATFFANIVKNLPADDLTLAVD----GLRASITSGASAFTINGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P   E + V S  ++++ L +++ +T  + +T+E R  L GI   +N  D+K  A
Sbjct: 117 DVRNYPQLPELDDVQSLSVSAAQLVDIISQTKISASTQESRPILTGIHLALNGNDVK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           V TD HRL+   V +    A+    +I+P K+  E+  +L  +D  V + L++++   ++
Sbjct: 175 VTTDSHRLSQRIVTLTGTDAQVNADVIMPAKSFNELQSLLEGQD-RVDIKLAKNQAVFDL 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
              +   RL++G +P    +IP  +  +L ++   L  A++R S++S   R   V+L+++
Sbjct: 234 GHTTFYSRLLEGNYPETDRLIPTESTTQLTIDAGTLLGAINRASLLSHESRNNVVQLTMT 293

Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              + +T  + ++G+  E +         ++I FN  Y+ + +   +   V       + 
Sbjct: 294 DGVVTLTGTSQEVGQVQEELQTTSVEGENLEISFNPDYVRDALRVFNGKLVD-----LKF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            ++     +    +              ++ P+R
Sbjct: 349 TTNLRPFTVTPAGEVDNKQ-------LQLITPVR 375


>gi|312874976|ref|ZP_07734995.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b]
 gi|311089721|gb|EFQ48146.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2053A-b]
          Length = 376

 Score =  284 bits (727), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 179/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP  
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  EDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKISNIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 IIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|268628273|gb|ACZ13535.1| DNA polymerase III beta chain [Xenorhabdus doucetiae]
          Length = 276

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS  ++   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + +K L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|260101877|ref|ZP_05752114.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           helveticus DSM 20075]
 gi|260084305|gb|EEW68425.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           helveticus DSM 20075]
 gi|328468761|gb|EGF39732.1| DNA polymerase III subunit beta [Lactobacillus helveticus MTCC
           5463]
          Length = 376

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 170/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ R+  +E L +  R I  + TIP+   + L   D  L +  S  +I I   IP +
Sbjct: 1   MKFTINRNLFIENLNNVMRAISSRATIPILSGIKLDLTDTDLTLTGSDTDISIEIKIPVN 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI + A    +IV+KL       F  E +   +  I   +S F +     +
Sbjct: 61  EDLNVESTGSIVLPARFFSEIVKKLPGKD---FSFEVKESFQTQIVSENSEFTINGLDAN 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     +F ++    + ++  T FA + ++ R  L G+ F  N  ++K  AVAT
Sbjct: 118 NYPRLPEIPDNAAFTISGKTFREIINETQFATSNDQTRAILTGVRFFFNPTNIK--AVAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +         +I+P K++ E+ RI+   D  VK+   +++    I +LS
Sbjct: 176 DSHRLSQRTIALENGPQAETDLIIPGKSLQELARIIGETDPEVKICPGDNQALFVIGNLS 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL+DG +P+   +IP      +  + + L  A++R S+++ + R   V L+L   + 
Sbjct: 236 FYSRLLDGNYPDTDRLIPTEKTTSVEFDISELSSALERASLLTHAGRNNVVTLTLDTANQ 295

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
              ++  + ++G   E ++        + I FN  Y+ + +        V D VV     
Sbjct: 296 TAKLSGKSAEIGNVEEDVSFRNLEGNDLQISFNPDYMRDALRA-----SVTDSVVMSFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 I            + +    ++ P+R
Sbjct: 351 PLRPFIINP--------GKDNIEFVQLITPVR 374


>gi|268628349|gb|ACZ13573.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           khanii]
          Length = 276

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVALSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|309805919|ref|ZP_07699951.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           03V1-b]
 gi|308167695|gb|EFO69842.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           03V1-b]
          Length = 376

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|268628339|gb|ACZ13568.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           temperata]
 gi|268628341|gb|ACZ13569.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           temperata]
 gi|268628343|gb|ACZ13570.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           temperata]
          Length = 276

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVALSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSDVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628295|gb|ACZ13546.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
 gi|268628297|gb|ACZ13547.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
 gi|268628299|gb|ACZ13548.1| DNA polymerase III beta chain [Xenorhabdus hominickii]
          Length = 276

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  A     G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLAQPHENGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|312873272|ref|ZP_07733327.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d]
 gi|311091152|gb|EFQ49541.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 2052A-d]
          Length = 376

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 180/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  DDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   + +    A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKLATGPAVTTNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|319901724|ref|YP_004161452.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108]
 gi|319416755|gb|ADV43866.1| DNA polymerase III, beta subunit [Bacteroides helcogenes P 36-108]
          Length = 374

 Score =  284 bits (726), Expect = 2e-74,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 177/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L +  S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLTVTVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   V A  L D ++++ +      F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDMDGRFAVIAKTLLDALKEIPEQP--LTFEINTDSLEITVQYQNGKYSLVGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +  +V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLMKNLLPKEQGNVVIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRQQLIGALRRVSIFSSQASSLIKLRMQENLIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+     DEV+  L   + + 
Sbjct: 296 AQDIDFSTSAEENLVCQYAGNPMSIGFKSTFLIDILNNISA-----DEVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|325980883|ref|YP_004293285.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212]
 gi|325530402|gb|ADZ25123.1| DNA polymerase III, beta subunit [Nitrosomonas sp. AL212]
          Length = 371

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 113/388 (29%), Positives = 201/388 (51%), Gaps = 25/388 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--AS 60
           I   R  +L+ L     I+ER+ T+P+  +VL++ N        +  EI+I   +    S
Sbjct: 4   IKTNRDTLLKPLQTVTGIVERRQTLPILSNVLIRQNQEKTSFLTTDLEIQIKTEVAESLS 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                + TVSA  L DI+R L    +++  ++++    + +    S F LQ  P  +FP 
Sbjct: 64  SQKDFAFTVSAKKLQDILRSLSADIEVTLTRKDD---HLLVKSHKSAFNLQILPAEDFPE 120

Query: 121 T-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             +E E   +  L     K+L+    FA+A ++IRYYLNG+   I+ +  +L +V TDGH
Sbjct: 121 VTEEPESDNAVTLTQKEFKDLLHLVQFAVAQQDIRYYLNGLLLLIDGK--QLISVGTDGH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA     +  +  K   +I+PRKAV E+ ++L   +  +K+   ++++  +   +++  
Sbjct: 179 RLAFVSTGLD-KAQKKQEVILPRKAVFELSKLLHDNEDPIKIEYFQNKVRFSFSDITLIS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAVKLSLSSDKLCM 297
           ++IDG+FP+Y  VIP  N+K   +N     QA+ RVSI+S+   + + V+L ++ D L +
Sbjct: 238 KIIDGKFPDYNRVIPTRNNKLFEINRLVFLQALQRVSILSNQSDKFRGVRLIVNKDNLRI 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              N +  +A E + + Y + P+DI  N  YL+++++N     V  + V    +++NSSV
Sbjct: 298 ICKNNEQEEAEEELEINYQDDPVDISLNITYLMDLLNN-----VTSERVQCAFENANSSV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +     +            Y++MPMRI
Sbjct: 353 LMTVPGNEI---------FKYIVMPMRI 371


>gi|160891922|ref|ZP_02072925.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492]
 gi|270296412|ref|ZP_06202612.1| DNA polymerase III, beta subunit [Bacteroides sp. D20]
 gi|317480392|ref|ZP_07939492.1| DNA polymerase III [Bacteroides sp. 4_1_36]
 gi|156858400|gb|EDO51831.1| hypothetical protein BACUNI_04380 [Bacteroides uniformis ATCC 8492]
 gi|270273816|gb|EFA19678.1| DNA polymerase III, beta subunit [Bacteroides sp. D20]
 gi|316903470|gb|EFV25324.1| DNA polymerase III [Bacteroides sp. 4_1_36]
          Length = 374

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L +  DG L    S  E  +   +   
Sbjct: 1   MKFIVSSTALSSHLQAISRVINSKNALPILDCFLFELQDGTLSATVSDSETTMVTTVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   V+A  L D ++++ +      F+ N    E+ + + +  + L      EFP
Sbjct: 61  ESDMDGRFAVTAKTLLDALKEIPEQP--LTFEINTDSLEITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + VL   + R  FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSAMLGDNAVRVEMDAQVLLGGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAAKGNERAAFILPKKPASLMKNLLPKEQGMVTIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  + + ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYKVTVDRLQLLGALRRVSIFSSQASSLIKLRMQENLIVIS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+     DE+V  L   + + 
Sbjct: 296 AQDIDFSTSAEETLVCQYAGNPMSIGFKSTFLIDILNNISA-----DEIVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIIPVEQEENED 362


>gi|238922434|ref|YP_002935947.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656]
 gi|238874106|gb|ACR73813.1| DNA polymerase III, beta subunit [Eubacterium rectale ATCC 33656]
 gi|291529188|emb|CBK94774.1| DNA polymerase III, beta subunit [Eubacterium rectale M104/1]
          Length = 370

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 179/385 (46%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   ++++L+ +    + +  + T+ +   +L+ A+   +++ A+  E+ I   I  +
Sbjct: 1   MKLICSKANLLKGVNIVSKAVPTRTTMAILECILIDASANEIKLMANDMELGIETIIDGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I + A +  +IVRKL D        E +   +  IS   + F +      +F  
Sbjct: 61  IEERGIIALDAKIFSEIVRKLPDNDV---TIETDASFKTVISCEKAKFNIIGKSGDDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   LK ++ +T F++A  +    + G  F I E   KL  V+ DGHR
Sbjct: 118 IPYVERNESIVLSQFTLKEVIRQTIFSIADNDNNKLMTGELFEIEEN--KLRVVSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  +++         ++VP K + EI +I+    D  V + ++ + I    E+ ++  
Sbjct: 176 ISIRYIEMKNHY-DSKKVVVPGKTLQEISKIIPGSADEDVVIYITNNHIVFEFENTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+GE+     ++    D ++R+N   L   +DR +++      + + ++++   + + 
Sbjct: 235 RLIEGEYFKIDQMLSSDYDTKVRINKRELLDCIDRATLLVKEGDKKPIIMNITDGNMELR 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + N  +G   E +++  +   + I FN K+ ++ +  I      ++EV   + +  +  F
Sbjct: 295 I-NSFIGSMNEDIDIDKDGKDIMIGFNPKFFIDALRVID-----EEEVNLYMVNPKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++    Y+++P+
Sbjct: 349 I----------KDDEGKFIYLILPV 363


>gi|268628353|gb|ACZ13575.1| DNA polymerase III beta chain [Photorhabdus sp. Q614]
 gi|268628355|gb|ACZ13576.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp.
           asymbiotica]
          Length = 276

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SKNQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628351|gb|ACZ13574.1| DNA polymerase III beta chain [Photorhabdus asymbiotica subsp.
           australis]
          Length = 276

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SKNQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|187250426|ref|YP_001874908.1| DNA polymerase III subunit beta [Elusimicrobium minutum Pei191]
 gi|186970586|gb|ACC97571.1| DNA polymerase III, beta subunit [Elusimicrobium minutum Pei191]
          Length = 369

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 108/388 (27%), Positives = 194/388 (50%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + +   LE L      +  + T+P+  + L++  +G +++  +  E+     I A 
Sbjct: 1   MKINITKETFLEGLSVVQAGVSSRATLPILHNFLMETENGKIKLVRTDMEMASIHYIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+T+    + DI++ L +  +I+     +   +V+I  G S F++   P+SE+P 
Sbjct: 61  ILEEGSVTIPLKEVSDILKNLPNDKEINLTVGED--NKVHIKSGKSKFWVIGTPKSEYPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      L    ++ +VE+T F+ +T+E RY LNG+ +       K   VATDG R
Sbjct: 119 IPEIDKSNLINLKIKEIQEMVEKTIFSSSTQETRYVLNGLLWVKTGN--KFEVVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRIHLNIESLS 236
           LA+A   I +       II+P K + E+LR  S    S+D ++ +S++ +++  NI+  +
Sbjct: 177 LALAVDTIESDTKD-FKIIIPTKILNELLRFFSINKPSEDDTLVLSVASNQVSFNIKETT 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
              RLI+G FPNY+ VIP         +   +  +  R S+ ++     VK SL+++ L 
Sbjct: 236 YISRLIEGNFPNYEQVIPNKKVMGFLSDTKEILASTKRASLCANELGGTVKYSLNNNVLK 295

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T ++  M    + M V Y   P +I FN +Y+L+++ NIS+     ++V F   ++   
Sbjct: 296 ITSNSQKM-DFSDEMKVEYTAEPFEISFNPQYVLDVLKNIST-----EKVEFSFINAAQP 349

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V I          + N     YV+MP+R
Sbjct: 350 VLIE---------EINNTKFKYVIMPVR 368


>gi|299143461|ref|ZP_07036541.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386
           str. F0131]
 gi|298517946|gb|EFI41685.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 386
           str. F0131]
          Length = 364

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 188/386 (48%), Gaps = 25/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +ER ++   +    + I  + T+ +   +L+ A D LL + AS  EI I   +PA 
Sbjct: 1   MKIRIERKELSRHISIVQKAISSRTTMQILEGILIIAKDNLLTLIASDTEISIKTTLPAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I V++ L  DI+RKL     I  F+ N+  T +NI    S F +Q     EFP 
Sbjct: 61  ISDEGKIVVNSRLFGDIIRKL--QGDIIDFEINQ--TNMNIKCLKSEFNIQCQVPDEFPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   + +L SS  K  + +T FA++ +E R    G+   I  +  K+  VA DG R
Sbjct: 117 LPRVDENLTIKLKSSDFKEAIRKTSFAVSFDETRVAFTGVLMDIKNK--KINFVALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+    +  +  +  S I+P +++ E+++I+ + +  V +++  + +  +++       
Sbjct: 175 MALK--SLDTECEENISAIIPARSLNELVKIIEN-EEYVNLTIGRNSLKFDLDKTIFYTT 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L+ GEF  Y+ +I       + V   +L+ +++R ++++   +   VKL +   ++ +T 
Sbjct: 232 LLSGEFFKYEGLIKNDQSIIVEVLKHDLQSSLERATLLAKEDKANLVKLDMKDSEIEITS 291

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   ES++   +   + I FN KYLLE +  I S++     V      S +   I
Sbjct: 292 -NSEIGNVEESVDAKISGENLKIAFNSKYLLEGVRIIESEK-----VTLNFTDSINPCII 345

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R +D           +  Y+++P+R+
Sbjct: 346 REEDD---------KDYIYLVLPVRL 362


>gi|268628287|gb|ACZ13542.1| DNA polymerase III beta chain [Xenorhabdus koppenhoeferi]
          Length = 276

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 100/271 (36%), Positives = 161/271 (59%), Gaps = 6/271 (2%)

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L + P S+FP+ 
Sbjct: 12  HEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPASDFPNL 68

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRL
Sbjct: 69  DHWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRL 126

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           AV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L
Sbjct: 127 AVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKL 185

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +N
Sbjct: 186 VDGRFPDYRRVLPKNPDKTLEANCDTLKQAFSRAAILSNEKFRGVRIYLSENQLKITANN 245

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           P+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 246 PEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|162456447|ref|YP_001618814.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56']
 gi|161167029|emb|CAN98334.1| DNA polymerase III beta subunit [Sorangium cellulosum 'So ce 56']
          Length = 376

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 104/391 (26%), Positives = 189/391 (48%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + + + D+L L+     + ++K+ +P   +VLL A    + + A+   + +TG   A 
Sbjct: 1   MDLVIPKKDLLRLVARCQGVADKKSAMPALANVLLAAEGNAVRVAATDLYLGVTGQTHAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V A  L + V+ + DG       E    +   +      + L   P SEFP 
Sbjct: 61  IKTGGTVAVPARDLLERVKAMPDGPIQITTTEGAHTSLKAVGSPR-RYTLPGLPGSEFPQ 119

Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    S EL    L  L+ RTHF+++T+E R ++N   F    +  ++  V TDGH
Sbjct: 120 LPAPAVDAPSLELPVEQLALLITRTHFSISTDETRAHVNSALFEWAGD--RVRMVTTDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES--RIHLNIES 234
           RL+  E  +    A   ++++P KA+ E+ R+      +  +  V++++S      NI  
Sbjct: 178 RLSKMEATVSGSSA-TATMLIPLKAITELRRLAEEARAEKETPMVAITQSGPNAFFNIAG 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +  SV+L+D +FP YQ VIP   ++ +R       +A+  +++ ++ R   VKLS++   
Sbjct: 237 MQFSVKLVDAQFPPYQQVIPSVTERSVRAPRVAFAEALRAIALAANDRTGGVKLSIAPGT 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T ++PD G   + + V Y+   + I FN KY L+++ +I      D+EV+  +    
Sbjct: 297 LRITSESPDTGAGFDEVAVDYSGPEVTIGFNAKYFLDVLASID-----DEEVILGISGEL 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               IR        ++ N+ +   V+MPMRI
Sbjct: 352 DPAVIRP------GSESNQQSYVAVIMPMRI 376


>gi|268628279|gb|ACZ13538.1| DNA polymerase III beta chain [Xenorhabdus japonica]
          Length = 276

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  A     G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLAQPHEQGATTVPARKFFDIWRGLPDGAKISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMSIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y++V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRHVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628335|gb|ACZ13566.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           thracensis]
 gi|268628337|gb|ACZ13567.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           thracensis]
          Length = 276

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVALSLPHEGGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|305681648|ref|ZP_07404454.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC
           14266]
 gi|305658808|gb|EFM48309.1| DNA polymerase III, beta subunit [Corynebacterium matruchotii ATCC
           14266]
          Length = 418

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 30/400 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K   PV   +L+ A+D  LE      E+     IPA V+
Sbjct: 30  FVVAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVN 89

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L+ DI   L +     F      G+ V +  G S F L S P  ++P+  
Sbjct: 90  QPGRIAVAGKLIADITATLPNKPVEIFVD----GSTVQLKCGSSRFELPSIPLDDYPTLP 145

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +  + V +   A   ++    L G+   I  ED+ L   ATD  RLA
Sbjct: 146 TLPEVTGAINP-RLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITL--TATDRFRLA 202

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILS-SKDSSVKVSLS-------ESRIHLNIE 233
           +     +       + +++P K   E  R L  +    V++++        E    ++++
Sbjct: 203 LRRFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVD 262

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + RL+D EFPN   ++P  +     V  ++L+ A+ RV++++  R   +++  +  
Sbjct: 263 ARQTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVA-DRNAQIRMHFTPG 321

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           ++ ++    D G A ES+   +      + I FN  YL + +       V    VVF   
Sbjct: 322 EVLLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHV-----VRTQRVVFGFT 376

Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385
            S+    +  + +      D         +  Y+LMP+R+
Sbjct: 377 ESSRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 416


>gi|329942797|ref|ZP_08291576.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10]
 gi|332287389|ref|YP_004422290.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC]
 gi|313847969|emb|CBY16966.1| DNA polymerase III, beta chain [Chlamydophila psittaci RD1]
 gi|325506563|gb|ADZ18201.1| DNA polymerase III subunit beta [Chlamydophila psittaci 6BC]
 gi|328815057|gb|EGF85046.1| DNA polymerase III, beta subunit [Chlamydophila psittaci Cal10]
 gi|328914638|gb|AEB55471.1| DNA polymerase III, beta subunit [Chlamydophila psittaci 6BC]
          Length = 366

 Score =  283 bits (725), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 95/385 (24%), Positives = 183/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I   +     V TDG R
Sbjct: 118 LPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTIA--NGTATVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  ++++    +     I+P KAV EI+++  S+DS   + L +++I +   +  +  +
Sbjct: 176 LAKTDIEVSLDKSFTGDYIIPIKAVEEIIKLC-SEDSEASIFLDQAKIAVECGNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +   L ++   L   + +V++ ++    +VK + +  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|217967933|ref|YP_002353439.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724]
 gi|217337032|gb|ACK42825.1| DNA polymerase III, beta subunit [Dictyoglomus turgidum DSM 6724]
          Length = 367

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 180/389 (46%), Gaps = 26/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ++ D+ + L      +  K TIP+  +V ++A +  L ++ +  EI +  ++P  
Sbjct: 1   MKFITQQEDLYKSLQFVKSAVATKTTIPILTYVYMKAENDTLYLQGNNLEIGLALSMPVI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + + A L  D++ KL +   ++            I  G S+  +Q     EFP 
Sbjct: 61  VEEPGEVCLPASLFIDVIGKLPE---VTLEIHVNERNRAVIHAGYSDIEIQGESTEEFPK 117

Query: 121 TKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +      Y       +    +++T FA A +EI+  L G+ F    ++ KL  VA DGH
Sbjct: 118 VEIGNIGEYHASFDRILFAKAIKQTIFAAAEDEIKQVLTGVLFE--GKEGKLNMVAVDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA+  ++I    A    IIVP K++ E  +I++   D  V ++  ++++  N   +   
Sbjct: 176 RLALKTLEIEKDFAP---IIVPSKSLKEWQKIITKAMDDRVNMAALDNQVVFNCGEIYFI 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCM 297
            RL+ G+FP Y  +IP       + N  +    + R+ + +   +   VK+SLSS+++ +
Sbjct: 233 SRLLQGQFPAYDKIIPTDFTASFKANRKDFLDVLGRMEVFAEIDQTNTVKISLSSEEVVI 292

Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +    + G A E +      +  ++I FN +YL++ +DN        DEVV R  S    
Sbjct: 293 STLPSERGFAKEVLPAEVEIDGNLEIGFNVEYLMDPLDNAD-----WDEVVMRFTSDLGP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I   + +         N  Y+LMP+R+
Sbjct: 348 ALITSPEDE---------NYTYILMPVRL 367


>gi|268628329|gb|ACZ13563.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           tasmaniensis]
 gi|268628331|gb|ACZ13564.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           tasmaniensis]
          Length = 276

 Score =  283 bits (724), Expect = 3e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVALSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628333|gb|ACZ13565.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           tasmaniensis]
          Length = 276

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVALSLPHEAGATTVPARKFFDIWRGLPDGAEISLELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P S DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKSPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|313885457|ref|ZP_07819207.1| DNA polymerase III, beta subunit [Eremococcus coleocola
           ACS-139-V-Col8]
 gi|312619187|gb|EFR30626.1| DNA polymerase III, beta subunit [Eremococcus coleocola
           ACS-139-V-Col8]
          Length = 384

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 189/395 (47%), Gaps = 26/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG----- 55
           MK T+ R    ++L +  R I  K TIP+   + ++ N   + +  S  +I I       
Sbjct: 1   MKFTINRQKFTDVLNNVSRAIPGKTTIPILTGIKIEVNPDGVTLIGSDADISIESFLSNQ 60

Query: 56  --AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
             ++  ++   GSI V A L  DI+RKL     +    E++    + I+ G + F L   
Sbjct: 61  DESLQLNIKEQGSIVVGARLFNDIIRKLPTNEILL---ESDSNYLLTITSGPAVFTLNGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E ++  +  L +   K ++  T F+ + +E R  L G+   I+ +   +  
Sbjct: 118 DGAAYPHLPEIDFENTVSLPTLAFKEMINHTIFSASNQESRPILTGLNLSIHPD--YISG 175

Query: 174 VATDGHRLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRL+     V++   +  + ++ +P+K V E++RI+   D  +++ ++E ++   
Sbjct: 176 VATDSHRLSRREIPVELNTDLLDLTNVTIPKKTVTELVRIVED-DQKLQMLVNEQQVIFI 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
           +E+L++  RL++G +P+   +IP ++  +L VN  +   A++R S+MS   +   V+LS+
Sbjct: 235 LENLTIYSRLLEGNYPDTDRLIPSNHQTQLVVNANDFLAAIERASLMSHQSKNNIVQLSI 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + ++V   + G+A E + +   +   + I FN  Y+ + + + +  ++  D     
Sbjct: 295 KDQAVELSVSGNERGRASEDIQLKAVSGQDLLISFNPDYMRDALKSFNGIDIKID----- 349

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++   + +   D     + +       +L P+R
Sbjct: 350 FQTAVRPMLLSALDGSDLAHNE----LLQLLTPIR 380


>gi|255010438|ref|ZP_05282564.1| putative DNA polymerase III beta chain [Bacteroides fragilis
           3_1_12]
 gi|313148242|ref|ZP_07810435.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12]
 gi|313137009|gb|EFR54369.1| DNA polymerase subunit III [Bacteroides fragilis 3_1_12]
          Length = 374

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 97/372 (26%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  KN +P+    L Q  DG L +  S  E  +  ++   
Sbjct: 1   MKFIVSSTALSSHLQAVSRVINSKNALPILDCFLFQLEDGTLSVTVSDSETTMVTSVEVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V+A  L D ++++ +       K +    E+ + + +  + L      EFP
Sbjct: 61  ESDSNGKFAVAAKTLLDALKEIPEQPLTFEIKPDTY--EITVQYQNGKYSLMGQNADEFP 118

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    +     E+ + +L   + R+ FA A +E+R  +NGI+F I  ED+ +  VA+DG
Sbjct: 119 QSATLGDNAVRVEMEAQILLGGINRSVFATADDELRPVMNGIYFDITTEDITM--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V    + A+  +  + I+P+K    +  +L  +   V +   E      +ES  M 
Sbjct: 177 HKL-VRCKTLAARGNERAAFILPKKPATLLKNLLPKESGMVVIEFDERNAVFTLESYRMV 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ V+   L  A+ RVSI SS     +KL +  +++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPHKVTVDRMQLIGALRRVSIFSSQASSLIKLRMQENQIVVS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+    Y    M I F   +L++I++NIS+     +EV+  L   + + 
Sbjct: 296 AQDIDFSTSAEETQVCQYAGAAMSIGFKSTFLIDILNNISA-----EEVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            +   +++   +
Sbjct: 351 VVIPVEQEENED 362


>gi|161598680|ref|NP_938411.2| DNA polymerase III subunit beta [Corynebacterium diphtheriae NCTC
           13129]
          Length = 395

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 169/399 (42%), Gaps = 29/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             VE+ D+   +    R +  K T PV   V++ A+D  LE      E+     I A V 
Sbjct: 8   FRVEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVR 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L+ DI+  L +   I  F E   GT+V +  G S F L   P  E+P   
Sbjct: 68  QPGRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +   V       ++  + V +   A   +E    L GI   I+ E++ L   ATD  RLA
Sbjct: 124 QLPAVTGAIDP-NLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTL--TATDRFRLA 180

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLNIE 233
           +          +  + +++P K + +  R L S     V++++        E    ++I+
Sbjct: 181 LRRFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHID 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN   ++P  ++    V  + L  A+ RV++++  R   +++  + D
Sbjct: 241 NRQTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVA-ERNAQIRMQFTRD 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++    D G A ES+   +       I FN  YL + +  I +       VVF    
Sbjct: 300 EVILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRTS-----RVVFGFTE 354

Query: 353 SNSSVF-IRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
            +     I   +   + + D           Y+LMP+R+
Sbjct: 355 PSRPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 393


>gi|312871279|ref|ZP_07731377.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a]
 gi|311093293|gb|EFQ51639.1| DNA polymerase III, beta subunit [Lactobacillus iners LEAF 3008A-a]
          Length = 376

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 178/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP  
Sbjct: 1   MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKN 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  GSI + A    +I++KL       F  E +   +  I   +S+F +      
Sbjct: 61  EDLHIESTGSIVLPARFFSEIIKKLPGKD---FSFEVKDSFQTKIMSENSDFTINGLDAD 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF ++    K ++  T FA+A +E R  LNG+ F  N ++  + A+AT
Sbjct: 118 NYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNFDFNPKE--INAIAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   +      A   ++++P  ++ E+ +I++  D  V V   E+++   I +++
Sbjct: 176 DSHRLSRRTLKFATGPAVATNLVIPGNSLIELSKIIADDDPQVTVIPGENQVLFKIANIN 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVK--LSLSSD 293
              RL++G +P+ + +IP      + ++   L ++++RVS+++   R   VK  L++   
Sbjct: 236 FYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHESRNNVVKMYLNVEDQ 295

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ D+ ++G   E +     N   ++I FN  YL + +        + D +V +   
Sbjct: 296 IINLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV-----SITDSIVIKFTK 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  KD D K           ++ P+R
Sbjct: 351 PLRPFVVVPKDSDEK--------FIQLITPVR 374


>gi|229816998|ref|ZP_04447280.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM
           20098]
 gi|229785743|gb|EEP21857.1| hypothetical protein BIFANG_02253 [Bifidobacterium angulatum DSM
           20098]
          Length = 374

 Score =  283 bits (724), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 92/387 (23%), Positives = 171/387 (44%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ + + P+   + L+A DG L + A   EI     I A 
Sbjct: 1   MKVEVNSGALADAVAWTTRVIDARPSNPILAGIRLEAADGALRLSAFNYEISARDHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI V   LL DI + L               T + I+ G S F +Q  P +E+P 
Sbjct: 61  VDESGSILVLGKLLADITKSLPSEKTYLSA----NSTTLTITSGKSTFTMQLMPNAEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +      +      V +   A++ EE R  L G+    + +  K+   +TD  R
Sbjct: 117 LPSMPGMLGQV-DAPTFIQAVSQACVAVSREENRPVLTGVRMQFDGD--KVVLTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237
           LA A      Q   + +  + R + + ++ R L+ + +      +E+   L  ++   S 
Sbjct: 174 LARATFSWSPQDPTVHTTTLVRGSLLRDVSRSLNERQNLTLDFDTENPSLLGFDNAGRSS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +       +  ++  +L  A+ RV++++  R   +++  S  +L +
Sbjct: 234 TSQLIDGEFPAVDRLFADDYPIQAVIDKQSLIGAIKRVALVA-ERDAPIRMVFSGQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E ++V  +   + + FN  YL+E +  IS     +  V  +L ++   V
Sbjct: 293 SAGAVDEAQAKEIIDVDMDGDDITVAFNPSYLIEGLSAIS-----EPYVRMKLTTAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|268628305|gb|ACZ13551.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   DS +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFVFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SQNQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628303|gb|ACZ13550.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
 gi|268628307|gb|ACZ13552.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  282 bits (723), Expect = 4e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   DS +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFVFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|119025020|ref|YP_908865.1| DNA polymerase III subunit beta [Bifidobacterium adolescentis ATCC
           15703]
 gi|118764604|dbj|BAF38783.1| DNA polymerase III, b subunit DnaN [Bifidobacterium adolescentis
           ATCC 15703]
          Length = 374

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 161/387 (41%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 1   MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L              G+ + I+ G S F +Q  PESE+P 
Sbjct: 61  VDEAGSVLVLGKLLADITKSLPAAKTYLSTD----GSTMTITSGKSTFTMQLMPESEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                        S      V +   A++ EE R  L GI      +  K+   +TD  R
Sbjct: 117 LPVVPTKLGQV-DSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237
           LA +      + A + +  + R ++   +     +  +V +         +         
Sbjct: 174 LARSSFTWTPEDATISTTALVRGSLLRDMARSLDEHQNVTIDFDADNPSLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +          +N   L  A+ RVS+++  R   +++  S  +L +
Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVA-ERNAPIRMVFSGQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YL++ +  IS     +  V  ++ ++   V
Sbjct: 293 SAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMTTAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|268628313|gb|ACZ13555.1| DNA polymerase III beta chain [Xenorhabdus indica]
 gi|268628315|gb|ACZ13556.1| DNA polymerase III beta chain [Xenorhabdus indica]
          Length = 276

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEEGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276


>gi|225028837|ref|ZP_03718029.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353]
 gi|224953833|gb|EEG35042.1| hypothetical protein EUBHAL_03124 [Eubacterium hallii DSM 3353]
          Length = 370

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 175/387 (45%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT  ++  L  +    + +  K T+ +   +L++A D  +++ A+  E+ I   I  +
Sbjct: 1   MKITCSKNQFLYGVNTVSKAVSNKTTMDILQCILIEAYDDCIKLTANDTELGIETVIEGT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  +I++K+ D        E +   + NI        +      +F  
Sbjct: 61  IIEPGKIALEAKIFSEIIKKIPDNDV---CIETDESGKTNIECEQIQCSIMGRKGDDFSH 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L+   LK ++ +T F+++  E    + G    I  E+ K+   + DGHR
Sbjct: 118 LPEIEKENKITLSQFDLKEVIRQTIFSVSDNENNKLMTGELLSI--ENNKMTVTSLDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           ++V  +++     KM  +IVP K + E+ +IL  +   ++ + L++  I        +  
Sbjct: 176 ISVRNIELQESYPKME-VIVPGKTLSEVSKILPGEAKDTINLYLTDKHILFEFGETKVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RL++G+F N   ++    + +L +N   L + +DR ++       + + L + ++++ + 
Sbjct: 235 RLLEGKFYNIGQMLSNDYETKLTINKMELLRCLDRSTLFVKESDKKPIILKIENEQMNLM 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + +  +G   + + +      + I FN K+L++ +  I      ++EV   L +S +   
Sbjct: 295 ISSQ-IGSMKDQIAISKEGKDLVIGFNPKFLVDALRVID-----EEEVTIYLINSIAPCI 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           IR          D K +  Y+++P+ +
Sbjct: 349 IR----------DEKSSYLYLILPINV 365


>gi|225020876|ref|ZP_03710068.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii
           ATCC 33806]
 gi|224946358|gb|EEG27567.1| hypothetical protein CORMATOL_00884 [Corynebacterium matruchotii
           ATCC 33806]
          Length = 396

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 164/400 (41%), Gaps = 30/400 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +    R +  K   PV   +L+ A+D  LE      E+     IPA V+
Sbjct: 8   FVVAKEDLASAVSWVARNLPTKPAQPVLRAMLITADDDGLEFAGFDYEVSTKVRIPAEVN 67

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L+ DI   L +     F      G+ V +  G S F L S P  ++P+  
Sbjct: 68  QPGRIAVAGKLIADITATLPNKPVEIFVD----GSTVQLKCGSSRFELPSIPLDDYPTLP 123

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +  + V +   A   ++    L G+   I  ED+ L   ATD  RLA
Sbjct: 124 TLPEVTGAINP-RLFIDAVTQVATAAGKDDTLPMLTGVHMEIEGEDITL--TATDRFRLA 180

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILS-SKDSSVKVSLS-------ESRIHLNIE 233
           +     +       + +++P K   E  R L  +    V++++        E    ++++
Sbjct: 181 LRRFQWIPAFPDAQAKLLIPAKNFVENARTLDANSTEPVEIAVGSGDSIGAEGLFGIHVD 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + RL+D EFPN   ++P  +     V  ++L+ A+ RV++++  R   +++  +  
Sbjct: 241 ARQTTTRLLDAEFPNVNPLLPKFHKCLASVEISSLQDAIKRVALVA-DRNAQIRMHFTPG 299

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           ++ ++    D G A ES+   +      + I FN  YL + +       V    VVF   
Sbjct: 300 EVLLSAGGSDAGHAEESVPCEFIGTEEELLIAFNPAYLRDGLHV-----VRTQRVVFGFT 354

Query: 352 SSNSSVFIRGKDK------DSKNNKDNKVNAFYVLMPMRI 385
            S+    +  + +      D         +  Y+LMP+R+
Sbjct: 355 ESSRPAILIPEPEKLPELNDDGLYPTPDTDFTYLLMPVRL 394


>gi|33860561|ref|NP_892122.1| DNA polymerase III subunit beta [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
 gi|33633503|emb|CAE18460.1| DNA polymerase III, beta chain [Prochlorococcus marinus subsp.
           pastoris str. CCMP1986]
          Length = 385

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 194/399 (48%), Gaps = 30/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG--LLEIKASGPEIEITGAIP 58
           M+I   +++    +    + +  + T P+  ++LL A+ G   + +      + I  +  
Sbjct: 1   MEIVCNQNEFNYAIQLVSKAVASRPTHPILANLLLTADQGTNKISLTGFDLNLGIQTSFD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V+  G+IT+ + LL +IV KL     +S   + E    + I     +F ++  P  ++
Sbjct: 61  ATVNKSGAITIPSKLLSEIVNKLPSETPVSLDVD-ESSDNILIKSDRGSFNIKGIPSDDY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS    E   S  +  S     ++ T FA ++++ +  L G+ F  N + L+  + ATDG
Sbjct: 120 PSLPFVESGTSLNIDPSSFLKALKLTIFASSSDDSKQLLTGVNFTFNLKYLE--SAATDG 177

Query: 179 HRLAVAEVDIVAQIAKMP---------SIIVPRKAVGEILRILS--SKDSSVKVSLSESR 227
           HRLAV  VD      +           S+ +P +++ EI +++S  S ++S+K+   + +
Sbjct: 178 HRLAVVLVDNKENFDEKEDFASNEENLSVTIPTRSLREIEKLVSLRSSENSIKLFYDKGQ 237

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +     +  ++ R ++G +PNY  +IP +  K    N   + ++++R+++++  +   VK
Sbjct: 238 VVFISSNQIITTRTLEGSYPNYSQLIPDNFTKIFTFNTKKIIESLERIAVLADQQSSVVK 297

Query: 288 LSLSSDKLCM-TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           + L+   L + + D  D+G A E + V +     DI FN +YLLE +  ISS     + V
Sbjct: 298 IKLNEKDLALVSADAQDIGNASELVPVSFYFDQFDIAFNVRYLLEGLKVISS-----ENV 352

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +F+ +   +   +  +D        N  +  Y++MP+++
Sbjct: 353 IFKCNLPTTPAVLVPED--------NINSFTYLVMPVQV 383


>gi|139439856|ref|ZP_01773221.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC
           25986]
 gi|133774784|gb|EBA38604.1| Hypothetical protein COLAER_02255 [Collinsella aerofaciens ATCC
           25986]
          Length = 367

 Score =  282 bits (723), Expect = 5e-74,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 186/388 (47%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S + + +G   + +   +T+P+   VL++A DG+LE + S   I I   I A 
Sbjct: 1   MKFTVSQSSLTQAIGVVMKGVASASTLPILSGVLVKAQDGILEFQTSNYTISIRHRIAAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + +   +L +I + L D        E     +V IS   S+F L +   ++FP 
Sbjct: 61  VEEEGEMVIPCKMLSNITKTLPDAPVTFELSE----RQVLISCEKSSFRLNTLDANDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   + EL + +L  +V R     +T++ R  L G+   +    ++L  VATD  R
Sbjct: 117 FPAYAIESAVELPTDILSEMVGRVWRVTSTDKARPILGGVHMKVENNTVRL--VATDSFR 174

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV +  +          + VP  A  + L I++S+ +++ +  +++++     + +   
Sbjct: 175 LAVCDTQVETSTLEGSFELNVPADAFNDALNIMASQ-ATIMIGATDTQVVFEAGNTTYVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297
           R I+G +PNY+ +IP S    ++++      A+ RV++++S    AVK  +   + ++ +
Sbjct: 234 RRIEGVYPNYKQLIPDSCVTSVKIDVAAFNAALKRVAVIASA-NPAVKFEIDVENGQMGL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D   A E+++V        I FNY Y+   ++ +S ++    E+   L S + + 
Sbjct: 293 SSISNDQDLAQETIDVEAEGESGTIAFNYHYIFGCLNALSKEK----EITLELKSYSQAG 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  D         K+N  Y++MP+RI
Sbjct: 349 IFKSYD---------KINYLYLVMPVRI 367


>gi|268628275|gb|ACZ13536.1| DNA polymerase III beta chain [Xenorhabdus romanii]
          Length = 276

 Score =  282 bits (723), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 99/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS  ++   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVEQD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + +K L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPNKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    ++I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVNYQGSEVEIGFNVSYVLDV 276


>gi|268628289|gb|ACZ13543.1| DNA polymerase III beta chain [Xenorhabdus szentirmaii]
          Length = 276

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 164/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLVANCDTLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628345|gb|ACZ13571.1| DNA polymerase III beta chain [Photorhabdus temperata subsp. khanii
           NC19]
 gi|268628347|gb|ACZ13572.1| DNA polymerase III beta chain [Photorhabdus temperata subsp.
           khanii]
          Length = 276

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVALSLPHEEGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPAADFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETESEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQNLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLKITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|104773259|ref|YP_618239.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
 gi|103422340|emb|CAI96848.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC 11842]
          Length = 375

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 188/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L+  +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL         KE   G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P  +   ++   ++  Q + R S+++ + R  AV+++L+    
Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDFMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ ++P++GK  E +         + I FN  Y+   +        V D V+     
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   D+  +           ++ P+R
Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373


>gi|268628317|gb|ACZ13557.1| DNA polymerase III beta chain [Xenorhabdus cabanillasii]
          Length = 276

 Score =  282 bits (722), Expect = 6e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEEGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLXIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVNYHGAEMEIGFNVSYVLDV 276


>gi|268628369|gb|ACZ13583.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           caribbeanensis]
 gi|268628371|gb|ACZ13584.1| DNA polymerase III beta chain [Photorhabdus luminescens subsp.
           caribbeanensis]
          Length = 276

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  S+    G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMMARVTLSLPHEAGATTVPARKFFDIWRGLPDGAEISVELD---GDRLLVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEAEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  ++    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMGIGQKLP-SHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  +C  L+QA  R +I+S+ + + V+L  
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEASCDMLKQAFSRAAILSNEKFRGVRLYF 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SKNQLKITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYVLDV 276


>gi|160944265|ref|ZP_02091494.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii
           M21/2]
 gi|158444447|gb|EDP21451.1| hypothetical protein FAEPRAM212_01774 [Faecalibacterium prausnitzii
           M21/2]
          Length = 368

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 185/386 (47%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I  +++ +   +    + +  +++IPV   +LL+A    L +     E+ I   I A+
Sbjct: 1   MNIVCDKTLLSAAIDGVSKAVTMRSSIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I ++A LL  ++ ++  G       +N    +  I  G + F +QS P ++FP 
Sbjct: 61  IKEPGEIVLNAKLLSSMISRMPAGQISIVAADN---GKTTIQSGVAQFEIQSMPATDFPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + + VL+++++RT +A++ +E +    G  F I  +  KL  VA DG+R
Sbjct: 118 LPNTGAEQTLTIKTGVLRDMIDRTLYAVSQDEKKPAHTGELFEIELD--KLTIVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E  I A   K   IIVP K + E+  +L +  +  V +S +   +       ++  
Sbjct: 176 LAIVERPITA--VKDIRIIVPSKTMTEVSHLLANDDEEDVHISANRRYVVFTTAGYTIMS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           RLI+GEF NY+NVIP  +   + ++  +    ++R S++ + R    +++S +  K+ + 
Sbjct: 234 RLIEGEFLNYRNVIPAGSRTRVTIDTKDFISTIERASLIITERLKNPLRISFTEGKVVVR 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               ++G+ ++  +       ++I FN +YLL+ + N  +     ++V   +    S V 
Sbjct: 294 CQ-TNLGRVVDEFSAACEGDEVEIGFNNRYLLDALRNART-----EQVRMEISGPLSPVK 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +   + +         +  Y+++P+R
Sbjct: 348 VLPVEGN---------DFLYLVLPVR 364


>gi|300812000|ref|ZP_07092456.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
 gi|300497026|gb|EFK32092.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus PB2003/044-T3-4]
          Length = 375

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL         KE   G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L    L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEI-AGTSFSLPPKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P  +   ++   ++L Q + R S+++ + R  AV+++L+    
Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ ++P++GK  E +         + I FN  Y+   +        V D V+     
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   D+  +           ++ P+R
Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373


>gi|268628319|gb|ACZ13558.1| DNA polymerase III beta chain [Xenorhabdus budapestensis]
 gi|268628321|gb|ACZ13559.1| DNA polymerase III beta chain [Xenorhabdus budapestensis]
          Length = 276

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEEGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFPLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMHI-GQSLPSHSVIVPRKGVIELMRLLDGGDTPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVKYHGTEMEIGFNVSYVLDV 276


>gi|116513230|ref|YP_812136.1| DNA polymerase sliding clamp subunit [Lactobacillus delbrueckii
           subsp. bulgaricus ATCC BAA-365]
 gi|116092545|gb|ABJ57698.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ATCC BAA-365]
          Length = 375

 Score =  282 bits (722), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 107/392 (27%), Positives = 189/392 (48%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L+  +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRAQIPILSGIKLELTEAELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL         KE   G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P  +   ++   ++L Q + R S+++ + R  AV+++L+    
Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ ++P++GK  E +         + I FN  Y+   +        V D V+     
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   D+  +           ++ P+R
Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373


>gi|296118605|ref|ZP_06837183.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM
           20306]
 gi|295968504|gb|EFG81751.1| DNA polymerase III, beta subunit [Corynebacterium ammoniagenes DSM
           20306]
          Length = 398

 Score =  282 bits (721), Expect = 7e-74,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 164/399 (41%), Gaps = 29/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V + D+   +G   R +  K   PV   ++  A+D  LEI     E+     I A ++
Sbjct: 11  FRVAKDDLSHAVGWVARNLPTKAAQPVLRAMIFTADDNGLEIAGFDYEVSTRVRIAAEIE 70

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G + V+  L+ DIV  + +       ++    T+V I  G S F L +    ++P   
Sbjct: 71  EPGRVAVAGKLMSDIVSAMPNRPVEIRQED----TKVLIQCGSSRFELPTISLEDYPQLP 126

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
               V        +    V +   A   ++    L GI   I  +D+ L   ATD  RLA
Sbjct: 127 VLPEVTGKINPQ-LFSEAVSQVAAAAGKDDTLPMLTGISMSIEGKDVHL--TATDRFRLA 183

Query: 183 VAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSK-DSSVKVSLS-------ESRIHLNIE 233
           V   +           ++VP K + E  R L S  +  +++++        +    L+ +
Sbjct: 184 VRTFEWEPTAEDVKTQLLVPAKTLQETARTLDSHINDPIEIAVGTGDSIAADGLFGLHAD 243

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FP   +++P ++     V    L++A+ RVS+++  R   +++  S  
Sbjct: 244 NRETTTRMLDADFPTVSHLLPKTHTAMASVEIGPLQEAIRRVSLLT-DRNAQIRMLFSEG 302

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ +     D G A E++   +     + I FN  +L + +  I +     D VVF    
Sbjct: 303 EVQLAAGATDTGNAEETIPCAFTGRDELLIAFNPAFLKDGLAVIPT-----DRVVFGFTE 357

Query: 353 SNSSVFIRGKDKDSKNNKDN------KVNAFYVLMPMRI 385
            +    +  + ++     ++           Y+LMP+R+
Sbjct: 358 PSRPAIMIPEPEELPEADEDGNFPTPDTFFTYLLMPVRL 396


>gi|268628309|gb|ACZ13553.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   DS +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|154486347|ref|ZP_02027754.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis
           L2-32]
 gi|154084210|gb|EDN83255.1| hypothetical protein BIFADO_00156 [Bifidobacterium adolescentis
           L2-32]
          Length = 374

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 161/387 (41%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 1   MKVEVNSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L              G+ + I+ G S F +Q  PESE+P 
Sbjct: 61  VDEAGSVLVLGKLLADITKSLPAAKTYLSTD----GSTMTITSGKSTFTMQLMPESEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                        S      V +   A++ EE R  L GI      +  K+   +TD  R
Sbjct: 117 LPVVPTKLGQV-DSPTFAQAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237
           LA +      + A + +  + R ++   +     +  +V +         +         
Sbjct: 174 LARSSFTWTPEDATISTTALIRGSLLRDMARSLDEHQNVTIDFDADNPSLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +          +N   L  A+ RVS+++  R   +++  S  +L +
Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAVINKQALIDAIKRVSLVA-ERNAPIRMVFSGQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YL++ +  IS     +  V  ++ ++   V
Sbjct: 293 SAGTADEAQAKEILDIDMDGEDITVAFNPSYLVDGLSAIS-----EPFVRMKMTTAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|268628327|gb|ACZ13562.1| DNA polymerase III beta chain [Xenorhabdus stockiae]
          Length = 276

 Score =  282 bits (721), Expect = 8e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLIANCDTLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|294790225|ref|ZP_06755383.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304]
 gi|294458122|gb|EFG26475.1| DNA polymerase III, beta subunit [Scardovia inopinata F0304]
          Length = 374

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 170/387 (43%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ S   E +    R+I  +   P+   V L+A DGLL++ A   E+     I A 
Sbjct: 1   MKVEIDSSAFSEAVSWTTRVIPARPATPILTGVKLEAADGLLQLSAFDYEVSARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   V   LL DI + L  G           G ++ +S G S F L   P+S++P 
Sbjct: 61  VDESGLAVVQGKLLADIGKALPVGKIYLSTS----GAKLTVSGGQSTFSLPLMPQSDYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        + +    + V +   A++ EE R  L G+    +  D K+   +TD  R
Sbjct: 117 LPQIPDALG-SVDADTFAHAVAQATVAISREESRPVLTGVKMIFS--DGKVQMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLNIESLSM 237
           L+ +          + + ++ R  +   +        +V V     S + +  +      
Sbjct: 174 LSRSTFAWSPSADDIDTSLLVRGTLLRDVARSLDTSQNVVVGFNPDSPTLVGFDNAGKIS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP+   +        + ++   L  A+ RVS+++  R   +++S  ++++ +
Sbjct: 234 TAQLIDGEFPSVDRLFAADYPIHVVLDKNALIDAIRRVSLVA-ERNAPIRMSFENNQVTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D  +A E+++V  +  P+ I FN  YL+E +       V +  V  ++ S   +V
Sbjct: 293 SAGSADESQAKETLSVDMDGDPITIAFNPAYLVEGLSA-----VYEPYVRMKMISPTKAV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+      + +  ++  Y+L+P+R
Sbjct: 348 EFNGQQD---QDGEESLDYRYLLVPVR 371


>gi|268628301|gb|ACZ13549.1| DNA polymerase III beta chain [Xenorhabdus mauleonii]
          Length = 276

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +  A     G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLAQPHENGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P ++FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPATDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNI-GQTLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  ++QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLVANCDMIKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|38198902|emb|CAE48513.1| DNA polymerase III, beta chain [Corynebacterium diphtheriae]
          Length = 405

 Score =  282 bits (721), Expect = 9e-74,   Method: Composition-based stats.
 Identities = 95/399 (23%), Positives = 169/399 (42%), Gaps = 29/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             VE+ D+   +    R +  K T PV   V++ A+D  LE      E+     I A V 
Sbjct: 18  FRVEKDDLSGAVSWVARNLPTKPTQPVLRAVVITADDEGLEFAGFDYEVSTKVHINADVR 77

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L+ DI+  L +   I  F E   GT+V +  G S F L   P  E+P   
Sbjct: 78  QPGRIAVAGKLMSDIIGTLPN-KTIEVFVE---GTQVQVVCGSSRFELPLIPLDEYPPLP 133

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +   V       ++  + V +   A   +E    L GI   I+ E++ L   ATD  RLA
Sbjct: 134 QLPAVTGAIDP-NLFTDAVLQVAAAAGRDETLPMLTGIHMEIDGENVTL--TATDRFRLA 190

Query: 183 VAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKD-SSVKVSLS-------ESRIHLNIE 233
           +          +  + +++P K + +  R L S     V++++        E    ++I+
Sbjct: 191 LRRFTWSPANPEAKAKLLIPAKNLSDNARSLDSGSTEPVEIAVGTGENIGAEGLFGIHID 250

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +   + R++D +FPN   ++P  ++    V  + L  A+ RV++++  R   +++  + D
Sbjct: 251 NRQTTTRMLDADFPNVSPLLPKVHNAMASVEISALSDAIRRVALVA-ERNAQIRMQFTRD 309

Query: 294 KLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++    D G A ES+   +       I FN  YL + +  I +       VVF    
Sbjct: 310 EVILSAGGSDAGHAEESVPCAFTGDQEFLIAFNSAYLRDGLSVIRTS-----RVVFGFTE 364

Query: 353 SNSSVF-IRGKDKDSKNNKDN-----KVNAFYVLMPMRI 385
            +     I   +   + + D           Y+LMP+R+
Sbjct: 365 PSRPAIMIPEPETLPEASADGTYPTPDTEFTYLLMPVRL 403


>gi|260904980|ref|ZP_05913302.1| DNA polymerase III, beta subunit [Brevibacterium linens BL2]
          Length = 379

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 163/388 (42%), Gaps = 21/388 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPAS 60
           K  V R  + + +  A + +  + + PV   +L+ A   G + +     E+     I A 
Sbjct: 9   KFKVNRDVLADAVTWATKTLPSRPSAPVLTGILITAEAGGTVRLSVFDYEVSSRVEIAAD 68

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++ VS  LL DI + L +        +    ++V+++   S F L + P  E+PS
Sbjct: 69  VVTPGTVLVSGRLLADISKALPNQDVTLEQID----SKVDVTCSSSRFSLMTMPVGEYPS 124

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S  +++   +N V +   A + ++    L  +   I  E  K+  +ATD +R
Sbjct: 125 LPQVPDA-SGTVSAGEFQNAVSQVTIATSKDDTLPILTSVRVEIEGE--KVTLLATDRYR 181

Query: 181 LAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESR--IHLNIESLSM 237
           LAV E         + ++ ++  + + ++ + L   D ++ +S    +  I         
Sbjct: 182 LAVREFTWNPGRPDVSAVALLRGRTLSDVSKSL-GGDVTIGLSNDAGKDLISFTSAGRVT 240

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           +  L++GE+P  +++ P S      V    LR+AV RVS+++  R   ++  +S   L +
Sbjct: 241 TSLLVEGEYPKVRSLFPDSVPIHAIVETGVLREAVRRVSLVA-ERNTPLRFEVSDGMLTL 299

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                D  +A E++       P+ + FN  Y+ E +  I S       V F        V
Sbjct: 300 HAGTGDDAQASEAVEAVLQGDPITVGFNPHYIAEGLAAIES-----PYVNFSFTQPMKPV 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I G+            +  Y+LMP RI
Sbjct: 355 IISGQRDLESTA---DESYRYLLMPTRI 379



 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 32/186 (17%), Positives = 74/186 (39%), Gaps = 13/186 (6%)

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              E     F++   VL + V      + +      L GI     E    +     D   
Sbjct: 1   MNAEASPLKFKVNRDVLADAVTWATKTLPSRPSAPVLTGILI-TAEAGGTVRLSVFDYE- 58

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
              + V+I A +    +++V  + + +I + L ++D +++   S+  +  +    S+   
Sbjct: 59  -VSSRVEIAADVVTPGTVLVSGRLLADISKALPNQDVTLEQIDSKVDVTCSSSRFSLMT- 116

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKL 295
           +  GE+P+    +P   D    V+    + AV +V+I +S         +V++ +  +K+
Sbjct: 117 MPVGEYPS----LPQVPDASGTVSAGEFQNAVSQVTIATSKDDTLPILTSVRVEIEGEKV 172

Query: 296 CMTVDN 301
            +   +
Sbjct: 173 TLLATD 178


>gi|268628291|gb|ACZ13544.1| DNA polymerase III beta chain [Xenorhabdus miraniensis]
          Length = 276

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYRGTEMEIGFNVSYVLDV 276


>gi|313122777|ref|YP_004033036.1| DNA polymerase iii, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
 gi|312279340|gb|ADQ60059.1| DNA polymerase III, beta subunit [Lactobacillus delbrueckii subsp.
           bulgaricus ND02]
          Length = 375

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 106/392 (27%), Positives = 187/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT----GA 56
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I      +
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           I   V+  GSI V+AHL  +IVRKL         KE   G ++ I+   +++ +     S
Sbjct: 61  IDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P  +   ++   ++L Q + R S+++ + R  AV+++L+    
Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ ++P++GK  E +         + I FN  Y+   +        V D V+     
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   D+  +           ++ P+R
Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373


>gi|62185060|ref|YP_219845.1| DNA polymerase III subunit beta [Chlamydophila abortus S26/3]
 gi|62148127|emb|CAH63884.1| DNA polymerase III, beta chain [Chlamydophila abortus S26/3]
          Length = 366

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 183/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  H+L++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHMLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I   +     V TDG R
Sbjct: 118 LPDIQNSVRFTLPAEQLKEMLQRTSFAVSREESRYVLTGVLLTIA--NGTATVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  ++++    +     I+P KAV EI+++  S+DS   + L +++I +   +  +  +
Sbjct: 176 LAKTDIEVSLDKSFTGDYIIPIKAVEEIIKLC-SEDSEASIFLDQAKIAVECGNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +   L ++   L   + +V++ ++    +VK + +  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESSVLLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|325685105|gb|EGD27236.1| DNA-directed DNA polymerase III beta subunit [Lactobacillus
           delbrueckii subsp. lactis DSM 20072]
          Length = 375

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 107/392 (27%), Positives = 188/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL         KE   G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEDLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P  +   ++   ++L Q + R S+++ + R  AV+++L+    
Sbjct: 235 FYTRLLEGAYPDVDRLLPTESTTSVQFAVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ ++P++GK  E +         + I FN  Y+   +        V D V+     
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDLTISFNPDYMAAALRA-----SVTDSVIINFTE 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   D+  +           ++ P+R
Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373


>gi|268628277|gb|ACZ13537.1| DNA polymerase III beta chain [Xenorhabdus vietnamensis]
          Length = 276

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 101/282 (35%), Positives = 164/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMHIGQNLP-SHSVIVPRKGVIELMRLLDGGDNLLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|312193899|ref|YP_004013960.1| DNA polymerase III subunit beta [Frankia sp. EuI1c]
 gi|311225235|gb|ADP78090.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c]
          Length = 387

 Score =  281 bits (720), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/398 (21%), Positives = 164/398 (41%), Gaps = 26/398 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNT----IPVSCHVLLQANDGLLEIKASGPEIEITGA 56
           MK  VER +  E +    R +  ++       V   +LL A    L + A   E+     
Sbjct: 1   MKFRVERDEFTEAVAWTARSLPSRSATATNQQVLMGLLLDATGPGLVVAAFDYEVAAQAT 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           + A+V   G       +L DI ++L          +N    ++ I+ G++ F LQ+ P  
Sbjct: 61  LEATVHEEGRALAPGRMLADITKQLPAAPVEVETDDN----KLVITCGNARFTLQTLPVD 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P+        +  +        V +   A   ++    L G+   I  + L L   AT
Sbjct: 117 EYPTLPPL-PPITGHIEGGAFGAAVAQVAVAAGKDDTLPVLTGVRLEIEGDTLTL--AAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSL-----SESRIHL 230
           D +RLAV  +           + ++P + + +  R L    + V ++L      E+    
Sbjct: 174 DRYRLAVRTLKWSPSSPDAAGVALIPARTLLDTARSLGGGTAQVAIALGTGPSGEALAGF 233

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                  + RL+DG+FP Y+ ++P S     +     L +AV RV++++  +   V+L+ 
Sbjct: 234 AGNHRQTTTRLVDGQFPPYRKLLPDSCPLTAQAEKGPLLEAVKRVALVA-PKTAPVRLAF 292

Query: 291 SSDKLCMTVDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           S+D L +   +     +A E++   Y+   +++ FN  YL + +  + SD+V        
Sbjct: 293 SADHLRLEAGSHGGEAQASETLPATYDGPDLEVAFNPAYLQDALTAVESDQVEFGFASAE 352

Query: 350 LD--SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               ++     + GK        D   +  Y+LMP+++
Sbjct: 353 DAEVAAKKPAILTGKGA-----GDELPDYRYLLMPIQL 385


>gi|229824636|ref|ZP_04450705.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271]
 gi|229786007|gb|EEP22121.1| hypothetical protein GCWU000282_01983 [Catonella morbi ATCC 51271]
          Length = 404

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/395 (24%), Positives = 173/395 (43%), Gaps = 27/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M  ++ R   +  L H  R I  K  IPV   + L+     L +  S   I I   I   
Sbjct: 22  MHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSDRLILTGSDASISIESVIETS 81

Query: 59  -----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   GSI +SA L  DIVRKL         ++      V ++ G + F +Q  
Sbjct: 82  QEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQD---HYNVQLTSGKAVFTIQGV 138

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             S++P   E +      L   + K L+ +T F+ + +E R  L G+    +  D  L  
Sbjct: 139 DSSQYPVLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFH--DGYLTG 196

Query: 174 VATDGHRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           VATD HRL+  ++ I       K  +I +P+K V E+ RIL   +S+V   +   ++  +
Sbjct: 197 VATDSHRLSKRDIPIKDLNPSLKGLNITIPKKTVIELTRILDD-ESNVTFYVMAQQLVFH 255

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
            ++L +  RL++G FP+   +IP + + EL VN  +  QA++R +++  V +   V+L +
Sbjct: 256 FDNLVIYSRLLEGTFPDTSRLIPTTYNTELTVNTQSFSQALERAALLVHVAKSNVVQLKM 315

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           S   + + V    +G++ E ++        + I FN  Y+ + + +       D  +   
Sbjct: 316 SQGSVALLVQGISIGQSTEELSYDSLEGDDLTIAFNPDYMRDAVKSFG-----DTTIKLG 370

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S    + +R         ++   +   +L P+R
Sbjct: 371 FISGERPLLLR-----EDKVEEGHNDLIQLLTPIR 400



 Score = 39.4 bits (91), Expect = 0.89,   Method: Composition-based stats.
 Identities = 25/189 (13%), Positives = 67/189 (35%), Gaps = 19/189 (10%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
               F +      N +     A+  +     L G+   +  +  +L    +D      + 
Sbjct: 20  PTMHFSINRDYFINQLNHVARAIPGKAAIPVLTGMKLELKSD--RLILTGSDASISIESV 77

Query: 186 VDIVAQIAKMP-----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           ++   + A++      SI++  +   +I+R L +    ++V      + L       +++
Sbjct: 78  IETSQEAAQLQVTTPGSIVLSARLFIDIVRKLPTNQVEIQVQ-DHYNVQLTSGKAVFTIQ 136

Query: 241 LID-GEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSD 293
            +D  ++P    V+P    DK + +     ++ +++    +S +        + LS    
Sbjct: 137 GVDSSQYP----VLPETDEDKPVTLPGLLFKKLINQTIFSASNQENRPILTGLNLSFHDG 192

Query: 294 KLCMTVDNP 302
            L     + 
Sbjct: 193 YLTGVATDS 201


>gi|300814758|ref|ZP_07095006.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836
           str. F0141]
 gi|300511145|gb|EFK38397.1| DNA polymerase III, beta subunit [Peptoniphilus sp. oral taxon 836
           str. F0141]
          Length = 365

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 178/386 (46%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R D+ + +    R I  + T+ +   +L+++ D  + + A+  EI I     A 
Sbjct: 1   MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V+  L  +I+RKL +       +       +NI  G+S F +       +P+
Sbjct: 61  VEEEGQIVVNGRLFGNIIRKLNNDDIFIKVE----NFNMNIKCGNSEFNISVQNAEGYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +    F L+   LK+ + +T FA++ +E R    G++    ++   +  VA DG R
Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQD--HINFVALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+  + I        S IVP ++  E+ +IL      + ++L  + I     +      
Sbjct: 175 MAI--MKINKNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LI G+F +Y+N++  S   +  V  +  + A +R S+++   R   V+++L+++++ +  
Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDS 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + ++G   E +N       + I FN +Y+LE I  + +     D ++  L    +   I
Sbjct: 293 KS-EIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMET-----DNIILNLTDFINPCII 346

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D +         +  Y+++P+R+
Sbjct: 347 KEEDNE---------DYIYLVLPVRL 363


>gi|297625206|ref|YP_003686969.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
 gi|296920971|emb|CBL55508.1| DNA polymerase III, beta chain [Propionibacterium freudenreichii
           subsp. shermanii CIRM-BIA1]
          Length = 386

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 94/401 (23%), Positives = 176/401 (43%), Gaps = 33/401 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKITVER  + E +    R +  + ++P+   +L++A    L + +   E      I A 
Sbjct: 1   MKITVERDVMAEAVAWVARSLPNRPSVPILAGLLMRATGSQLVLSSFDYETSARITIDAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   VS  LL +I R L +         N     V +  G + F LQ  P  ++P 
Sbjct: 61  VDEEGEALVSGRLLSEIARSLPNRPARFTANSNH----VELVCGSARFTLQMLPVEDYPQ 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S  + S      V +   A   +E+     G+   IN++  +L  +ATD +R
Sbjct: 117 LPEMPAE-SGTVPSDEFTRSVAQVVVAAGRDELLPVFTGVRIEINDD--RLSLLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           +A+ E+       +  S  +VP + + E  R +   ++ V ++LS     E  I L+ E 
Sbjct: 174 MALKELTWNPATTQAESAALVPARVLSESARSMGGGEA-VALALSNGIEGEGLIGLSGEG 232

Query: 235 ----LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                 ++ RL+DGEFP  ++++    +  +RV    + ++V RVS+++  R  +V++ +
Sbjct: 233 AGGRRELTTRLLDGEFPKVRHLMDIKPNVTVRVKTEEVLESVKRVSLVA-ERNTSVRMVI 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYN---ECPM---DICFNYKYLLEIIDNISSDEVVDD 344
             D++ +     D  +A E++    N      M    + FN +YL + +  + +      
Sbjct: 292 EDDRIALDAATGDQAQATEAIEAQVNNVAGGEMAVSAVGFNPRYLTDALSALDT-----P 346

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      ++G       + + + +  +V+M MR+
Sbjct: 347 YVQFSFTAPGKPCLVQGLPD---VDGEPEADYKHVIMLMRL 384


>gi|228473010|ref|ZP_04057767.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC
           33624]
 gi|228275592|gb|EEK14369.1| DNA polymerase III, beta subunit [Capnocytophaga gingivalis ATCC
           33624]
          Length = 384

 Score =  281 bits (719), Expect = 1e-73,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 176/383 (45%), Gaps = 17/383 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L     +I   NT+P+  + L + ++  L + AS  E  I G I   
Sbjct: 12  MRFIVSSSYLLKKLQIIGGVINSNNTMPILENFLFELSENKLVVSASDLETTIKGVIEVE 71

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                SI V   +L D ++   + A      +N     ++I   +  + L     +EFPS
Sbjct: 72  STDSISIAVPYKILIDTLKTFSEQALTFIINDN---NTIDIVSNNGKYTLAYLDSNEFPS 128

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L   +L   ++ T FA   +++R  +NG+FF+  EE   L   ATD H+
Sbjct: 129 VVEIENASQVTLMGDILATAIQSTFFATGNDDLRPIMNGVFFNFTEEG--LIFAATDAHK 186

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   E     +  +  + ++P+K +  +  IL+  ++ V +  +ES    + + L    R
Sbjct: 187 LVKYERQ-DIKSDQPAAFVIPKKPLNLLKGILAGSETQVTIEYNESNAKFSFDQLDYVCR 245

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG +PNY+ VIP  N  +L VN   +  +  R+S  +S     +++ +  + L +  +
Sbjct: 246 LIDGTYPNYEAVIPKENPNKLIVNRNLILNSTKRISNFASKATHQMRIKIVGNSLQIFAE 305

Query: 301 NPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + +   +A E++   Y    M+I FN K+ +E++ N+SS     DE++  +  SN    +
Sbjct: 306 DIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSS-----DEILLEMSYSNRPGIL 360

Query: 360 RGKDKDSKNNKDNKVNAFYVLMP 382
              D       D     + ++MP
Sbjct: 361 TPAD-----GLDEGEKIYMLVMP 378


>gi|330444456|ref|YP_004377442.1| DNA polymerase III subunit beta [Chlamydophila pecorum E58]
 gi|328807566|gb|AEB41739.1| DNA polymerase III, beta subunit [Chlamydophila pecorum E58]
          Length = 367

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 186/385 (48%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++++  L+     ++ +   IPV  HVL++ N+  L   A+   +       A 
Sbjct: 1   MKFAISKNELGSLIKKIQSVVPQNTPIPVLSHVLMETNNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G++++ +   + ++++L +          E+     I+ G S F L S  + +FP 
Sbjct: 61  VYEKGAVSIPSKRFFQLIKELTENNIEISAIAGEMA---QITSGSSCFRLLSMGKQDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK++++RT FA++ EE RY L G+   I      +  V TDG R
Sbjct: 118 LPDMQNAVRFTLPTEQLKDMLQRTSFAVSREESRYVLTGVLLSITNGIATI--VGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + ++    + +   I+P KAV EI+++ SS+D+   + L + +I +  ++  +  +
Sbjct: 176 LAKIDAEVSLDKSFVGDYIIPIKAVEEIIKLCSSEDTETTIFLDQDKIAVESDNTLLITK 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +  ++   L   + +V++ ++    +VK + +  +L +T +
Sbjct: 236 LLSGEFPDFTPVISTQSSVQFDLHREELIALLKQVALFTNENSHSVKFTFTPGELTLTAN 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 296 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 351 -----------DSTRSLFVIMPMRL 364


>gi|294792396|ref|ZP_06757543.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27]
 gi|294456295|gb|EFG24658.1| DNA polymerase III, beta subunit [Veillonella sp. 6_1_27]
          Length = 370

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 183/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL       +  E+  G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + +  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDNFAMKELIDLTNYAAATDEDRPIFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++       ++   S + + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSENNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E ++V +   P  I FN +Y+ +I+ + + D +            N  V 
Sbjct: 297 TQNTEIGMAKEDVSVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|269797071|ref|YP_003310971.1| DNA polymerase III subunit beta [Veillonella parvula DSM 2008]
 gi|269093700|gb|ACZ23691.1| DNA polymerase III, beta subunit [Veillonella parvula DSM 2008]
          Length = 370

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 182/386 (47%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL       +  E+  G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    INE ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEINENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++       ++   S   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D +            N  V 
Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|29840207|ref|NP_829313.1| DNA polymerase III subunit beta [Chlamydophila caviae GPIC]
 gi|29834555|gb|AAP05191.1| DNA polymerase III, beta chain [Chlamydophila caviae GPIC]
          Length = 366

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 185/385 (48%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNEVGNLIKKIQSVVPQNTPIPVLTHVLIETCNDELVFTATDLTVSTRCVAQAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +       G    I+ G S F L S  + +FP 
Sbjct: 61  VYESGAISIPSKRFFQLVKEL---TEANLEISATTGEMAKITSGSSCFRLLSMGKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  L+ +++RT FA++ EE RY L G+   I   +  +  V TDG R
Sbjct: 118 LPDIQNAIRFTLPAEQLREMLQRTSFAVSREESRYVLTGVLLTIA--NGIVTVVGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + +I    + +   IVP KAV EI+++  S+DS   + L +++I +   +  +  +
Sbjct: 176 LAKTDTEISLDKSFIGDYIVPIKAVEEIIKLC-SEDSEATIFLDQAKIAVECGNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   +  +L ++   L   + +V++ ++    +VK + +  +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESSVQLDLHREELITLLKQVALFTNESSHSVKFTFTPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVRLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +   + +V+MPMR+
Sbjct: 350 -----------DSTRSLFVIMPMRL 363


>gi|313893531|ref|ZP_07827101.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158
           str. F0412]
 gi|313441974|gb|EFR60396.1| DNA polymerase III, beta subunit [Veillonella sp. oral taxon 158
           str. F0412]
          Length = 370

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL       +  E+  G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++       ++   +   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D +            N  V 
Sbjct: 297 TQNSEIGMAKEDIAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|269303215|gb|ACZ33315.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae LPCoLN]
          Length = 366

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +    +  G    I+ G S F L S  + +FP 
Sbjct: 61  VYEKGAISIPSKRFFQLVKEL---TEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG R
Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + ++    +     I+P KAV EI+++ S  +    + L + +I +  ++  +  +
Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVCLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +  +  +V+MPMR+
Sbjct: 350 -----------DSASGLFVIMPMRL 363


>gi|238018222|ref|ZP_04598648.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748]
 gi|237864693|gb|EEP65983.1| hypothetical protein VEIDISOL_00046 [Veillonella dispar ATCC 17748]
          Length = 370

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL       +  E+  G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++       ++   +   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWAESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D +            N  V 
Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|270158401|ref|ZP_06187058.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968]
 gi|289163355|ref|YP_003453493.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150]
 gi|269990426|gb|EEZ96680.1| DNA polymerase III, beta subunit [Legionella longbeachae D-4968]
 gi|288856528|emb|CBJ10323.1| DNA polymerase III, beta chain [Legionella longbeachae NSW150]
          Length = 367

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 195/386 (50%), Gaps = 23/386 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           + T+++ D+L  L      +++K ++ +  +  L+ +DGLL I A+  EIEI+  +   S
Sbjct: 3   EFTIKKEDLLPPLLAVAGAVDKKQSLAILSNFFLKLSDGLLNITATDLEIEISAQVACVS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GSITV A    DI+R L D         N L   + +  G S+F L + P   +P 
Sbjct: 63  KHSSGSITVPAKKFIDIIRSLDDETSPDVLVNNSL---LTLKQGRSSFKLTTLPAEGYPL 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +++E       L   VL  L++ THFAMA +++R +LNG+F         + AVATDGHR
Sbjct: 120 SEDECNEVELTLPRLVLLKLLQSTHFAMAQQDVRVFLNGLFLDFEPNL--ISAVATDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+          K   +++P+K V E+LRIL+   D  + ++  +S   L         
Sbjct: 178 MAICRYQCSNISDK--KLLLPKKGVQELLRILNYIDDEEILLTAGKSHFKLITRQFVFIS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+  FP Y   IP + DK + ++C+ L++++ R+ I++  + +AV L L    L +  
Sbjct: 236 KLIEARFPPYTKAIPRNQDKHILIDCSVLKRSLSRIVILAHEKSKAVMLHLQPGMLTLIA 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N +  +A+ES+        + I  N  YLL+++ +       + ++   L +++SS+ I
Sbjct: 296 NNNEQEEAVESLIAETQGDELKIGLNATYLLDVLSHFG-----EGQIRLSLSNTDSSILI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + +         +  Y++MPM+I
Sbjct: 351 ESLNDE---------DYQYIIMPMKI 367


>gi|282881769|ref|ZP_06290427.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B]
 gi|281298379|gb|EFA90817.1| DNA polymerase III, beta subunit [Peptoniphilus lacrimalis 315-B]
          Length = 365

 Score =  280 bits (718), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 86/386 (22%), Positives = 178/386 (46%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + R D+ + +    R I  + T+ +   +L+++ D  + + A+  EI I     A 
Sbjct: 1   MKFKINRKDLAKHIFIVQRAISARTTMQILEGILIKSKDNKISLTATDTEISIVTETSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V+  L  +I+RKL +       +       +NI  G+S F +       +P+
Sbjct: 61  VEEEGQIVVNGRLFGNIIRKLNNDDIFIKVE----NFNMNIKCGNSEFNISVQNAEGYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +    F L+   LK+ + +T FA++ +E R    G++    ++   +  VA DG R
Sbjct: 117 LPNIKKDKVFSLSVDELKSAIRKTSFAVSLDETRMEFTGVYMDFLQD--YINFVALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+  + I        S IVP ++  E+ +IL      + ++L  + I     +      
Sbjct: 175 MAI--MKINKNTGFTSSAIVPSRSFVELEKILDDDKKDIVINLESNNIVFEFGNTVFYST 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           LI G+F +Y+N++  S   +  V  +  + A +R S+++   R   V+++L+++++ +  
Sbjct: 233 LISGKFFDYENLLRDSYKIQTSVIRSEFQSAFERASLLAREDRANLVEMTLNNEEIYIDS 292

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + ++G   E +N       + I FN +Y+LE I  + +     D ++  L    +   I
Sbjct: 293 KS-EIGNVHEVINCSQIGENLKIAFNSRYILEGIKIMET-----DNIILNLTDFINPCII 346

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +D +         +  Y+++P+R+
Sbjct: 347 KEEDNE---------DYIYLVLPVRL 363


>gi|290953774|ref|ZP_06558395.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
 gi|295312852|ref|ZP_06803583.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica URFT1]
          Length = 351

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 115/369 (31%), Positives = 209/369 (56%), Gaps = 22/369 (5%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIV 78
            +   K+T+P+   +L   ++  L+I AS  + EI+  I  S +    + ++A  +Y+IV
Sbjct: 3   SVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIV 62

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELASSVL 137
           R L + + I F        +V I   +S F L S     +P          SF+L+    
Sbjct: 63  RSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPLIDSNINEQASFDLSQQDF 119

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
            +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGHR+++ E  I +++    S
Sbjct: 120 HHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSAS 177

Query: 198 -IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
             I+P+KA+ E+ +I+   + ++K+ L ++ +     + +   +LIDG +P+YQ VIP +
Sbjct: 178 QSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKN 237

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
           N K L V+    + ++ R SI+++ + + V+L++S ++L ++ +NPD  KA + + V YN
Sbjct: 238 NTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYN 297

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
           + PM+ICFNYKYLL+II+ +S     ++ +   LD+ N S  +          KD K N+
Sbjct: 298 DQPMEICFNYKYLLDIINVLS-----EETMSIYLDNPNMSALV----------KDEKDNS 342

Query: 377 FYVLMPMRI 385
            +++MPM+I
Sbjct: 343 LFIIMPMKI 351


>gi|212715152|ref|ZP_03323280.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM
           16992]
 gi|212661833|gb|EEB22408.1| hypothetical protein BIFCAT_00038 [Bifidobacterium catenulatum DSM
           16992]
          Length = 386

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 168/387 (43%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   V L+A DG L++ A    I     I A 
Sbjct: 13  MKVEVNSQALADAVAWTTRVIDARPASPILAGVRLEAIDGTLQLSAFNYAISARHHIEAG 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GS+ V   LL DI + L              G+ + I+ G S F +Q  P++E+P 
Sbjct: 73  VDEAGSVLVLGKLLADITKSLPAAKTYLSTD----GSTMTITSGKSTFTMQLMPDAEYPD 128

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                       A +     V +   A++ EE R  L GI      +  K+   +TD  R
Sbjct: 129 LPVIPSKLGQVDAQT-FTQAVTQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 185

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237
           L+ +      +      + +V    + ++ R L    + V    +E+   L  E+     
Sbjct: 186 LSRSSFTWTPENPDTNATALVRGALLRDVARSLDEHQNIVVDFDTENPSLLGFENAGRVS 245

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +          +N  +L  A+ RVS+++  R   ++++ +S +L +
Sbjct: 246 TSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVA-ERNAPIRMAFTSQELTL 304

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T    D  +A E +++  +   + + FN  YL+E +  I      +  V  ++ ++   V
Sbjct: 305 TAGTADEAQAKEILDIDMDGEDITVAFNPTYLIEGLSAI-----AEPFVRMKMTTAVKPV 359

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +   ++ +  ++  Y+L+PMR
Sbjct: 360 EFNGQQE---SDSEESMDYRYLLVPMR 383


>gi|268628281|gb|ACZ13539.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
 gi|268628283|gb|ACZ13540.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
 gi|268628285|gb|ACZ13541.1| DNA polymerase III beta chain [Xenorhabdus poinarii]
          Length = 276

 Score =  280 bits (717), Expect = 2e-73,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWKSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   ++ +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGENPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVNDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEILDVSYQGTEMEIGFNVSYVLDV 276


>gi|268628311|gb|ACZ13554.1| DNA polymerase III beta chain [Xenorhabdus bovienii]
          Length = 276

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 102/282 (36%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVALTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F   EE+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEEEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              VATDGHRLAV  ++I   +    S+IVPRK V E++R+L   DS +++ +  + I  
Sbjct: 118 --TVATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDSLLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDVLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|294794202|ref|ZP_06759338.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44]
 gi|294454532|gb|EFG22905.1| DNA polymerase III, beta subunit [Veillonella sp. 3_1_44]
          Length = 370

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 181/386 (46%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYITTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL       +  E+  G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++       ++   S   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVILS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D +            N  V 
Sbjct: 297 TQNTEIGMAKEDVAVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|326335580|ref|ZP_08201767.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
 gi|325692346|gb|EGD34298.1| DNA-directed DNA polymerase III beta subunit [Capnocytophaga sp.
           oral taxon 338 str. F0234]
          Length = 373

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 175/383 (45%), Gaps = 17/383 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V  S +L+ L     +I   NT+P+  + L + +   L + AS  E  I G I   
Sbjct: 1   MRFIVSSSYLLKKLQIIGGVINTNNTMPILENFLFELSGNKLVVSASDLETTIKGVIEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                SI V   +L + ++   + A      +N     V+I   +  + L     +EFP+
Sbjct: 61  SSDTVSIAVPYKILIETLKTFTEQALTFIINDN---NTVDIVSNNGKYTLAYLDSAEFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L   +L   ++ T FA   +++R  +NG+FF++ E+   L   ATD H+
Sbjct: 118 IVEIENANHVSLMGDILATAIQSTLFATGNDDLRPIMNGVFFNLTEDA--LIFAATDAHK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   E     +     S ++P+K +  +  IL+  +S V +  +ES    + + L    R
Sbjct: 176 LVKYERQ-DIKSEYPASFVIPKKPLNLLKGILAGSESEVTIEYNESNAKFSFDQLDYVCR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LIDG +PNY+ VIP  N  +L VN   L  +  R+S  +S     +++ +  + L +  +
Sbjct: 235 LIDGNYPNYEAVIPKENPNKLIVNRNLLMNSTKRISNFASKSTHQMRVKIVGNSLQIFAE 294

Query: 301 NPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + +   +A E++   Y    M+I FN K+ +E++ N+SS     DEV+  +  SN    +
Sbjct: 295 DIEYNNRANETIPCNYEGDDMEIGFNSKFFIEMLSNLSS-----DEVLLEMSYSNRPGIL 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMP 382
              D       D     + ++MP
Sbjct: 350 TPAD-----GLDEGEKVYMLVMP 367


>gi|268628263|gb|ACZ13530.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
 gi|268628265|gb|ACZ13531.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
          Length = 276

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 166/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMRARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              +ATDGHRLAV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TIATDGHRLAVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++   + + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFTFTSKLVDGRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYPGTEMEIGFNVSYILDV 276


>gi|257062756|ref|YP_003142428.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM
           20476]
 gi|256790409|gb|ACV21079.1| DNA polymerase III, beta subunit [Slackia heliotrinireducens DSM
           20476]
          Length = 365

 Score =  280 bits (717), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 167/387 (43%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +S+ L  L    +    ++T+PV   V + A    L ++ +  +  I   + A 
Sbjct: 1   MKFSINKSEFLNALNVVAKGASSRSTLPVLAGVKITARSASLVLETTDLDRSIRCVVAAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   +   LL DIV+ L D A      +    +E  +S   ++F L +    +FPS
Sbjct: 61  VEDEGMCVIPQKLLSDIVKNLPDAAITVDVDD----SEATVSCDKTSFTLHTLIPDDFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        +      + V++   A + ++ R  L G+      E   +  VATD +R
Sbjct: 117 FPEVNIDNQITVPFKQFSSAVKKVAKAASKDQSRAVLTGVLLRTTPEG--MSIVATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV  +   +   +    +V    V E+   L     ++ + LS +++        M  R
Sbjct: 175 LAVCNLKFDS-AGEEFEALVTSSFVLEVAS-LPEVQETIDICLSANQVMFRFGDTVMVNR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCMT 298
            I+G++P Y+ +I  S   +     + L  AV RV +MSS     +K  ++       ++
Sbjct: 233 RIEGKYPAYEKLIAGSYTTKTCYTTSALITAVKRVGLMSSAAS-PIKFDINEATKNTVLS 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++ ++G A E ++   N   ++I  N++Y+++ + +IS+     D V F    S     
Sbjct: 292 TNSQEIGTASEVVSCEVNGENVEIALNHQYIIDGLSSIST-----DHVFFETQGSMKPGV 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            R  + +         +  Y+LMP+R+
Sbjct: 347 FRSGEGE---------DFLYLLMPVRL 364


>gi|268628323|gb|ACZ13560.1| DNA polymerase III beta chain [Xenorhabdus innexi]
 gi|268628325|gb|ACZ13561.1| DNA polymerase III beta chain [Xenorhabdus innexi]
          Length = 276

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ T+ A   +DI R L DGA+IS   +   G  + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTIPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              V+TDGHRLAV  ++I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TVSTDGHRLAVCSMNI-GQSLPSHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKILEANCDTLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYVLDV 276


>gi|303230644|ref|ZP_07317394.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-049-V-Sch6]
 gi|302514699|gb|EFL56691.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-049-V-Sch6]
          Length = 373

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 185/387 (47%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   ++++ + +    ++ + K +  +   + +   +  +E++ +  E+ I   I A 
Sbjct: 1   MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V++    +++RKL          E+  G  + I+ G S F L +    +F  
Sbjct: 61  ILEPGTLVVASRYFQELIRKLPGETIQLSKLED--GNTLKITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVATDGH 179
            ++        + S  +K L++ T++A A+++ R    G    I +  D ++  VATD H
Sbjct: 119 VEQIHDQDYVNIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVATDTH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           R+AV +V I         +I+P KA+ E+ R+L + + S +K+  + ++I    ES+ + 
Sbjct: 179 RMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESIYII 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297
            RLI+G +P Y+ VIP   D    V+      AVDRVS+++       ++   S +++ +
Sbjct: 239 SRLIEGTYPEYEKVIPAQFDSSAVVDRKEFAGAVDRVSLLAKDMSYNVIRYDWSEEQVTL 298

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N ++G A E + V +   P  I FN +Y+ +I+ + +      D +   L   N  V
Sbjct: 299 SSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTG-----DNIHMYLK-QNGPV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            IR         +DN  N  YV+ P+R
Sbjct: 353 VIR---------QDNNPNYTYVVTPVR 370


>gi|303228573|ref|ZP_07315400.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-134-V-Col7a]
 gi|302516752|gb|EFL58667.1| DNA polymerase III, beta subunit [Veillonella atypica
           ACS-134-V-Col7a]
          Length = 373

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 187/387 (48%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I   ++++ + +    ++ + K +  +   + +   +  +E++ +  E+ I   I A 
Sbjct: 1   MNIKFPKANLQKAINVLQKVSQNKTSSNLPGSIYITTKNNQVELQGNDFELGIKLTIDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V++    +++RKL    +     + E G  + I+ G S F L +    +F  
Sbjct: 61  ILEPGTLVVASRYFQELIRKLPG--ETIQLSKPEDGNTLKITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINE-EDLKLCAVATDGH 179
            ++        + S  +K L++ T++A A+++ R    G    I +  D ++  VATD H
Sbjct: 119 VEQIHDQDYVNIDSQAMKELIDLTNYAAASDDDRPVFAGALLEIKDANDKEVTMVATDTH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           R+AV +V I         +I+P KA+ E+ R+L + + S +K+  + ++I    ES+ + 
Sbjct: 179 RMAVKKVTIDEPATSPMRVIIPTKALAEVSRLLPTDNPSIIKIIWNRTQIVFMFESIYII 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCM 297
            RLI+G +P Y+ VIP   D    V+  +   AVDRVS+++       ++   S +++ +
Sbjct: 239 SRLIEGTYPEYEKVIPAQFDSSAVVDRKDFAGAVDRVSLLAKDMSYNVIRYDWSEEQVTL 298

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N ++G A E + V +   P  I FN +Y+ +I+ + +      D +   L   N  V
Sbjct: 299 SSQNAEIGMAKEEIPVEFKGTPFTISFNGRYISDILRHSTG-----DNIHMYLK-QNGPV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            IR         +DN  N  YV+ P+R
Sbjct: 353 VIR---------QDNNPNYTYVVTPVR 370


>gi|15835873|ref|NP_300397.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae J138]
 gi|33241682|ref|NP_876623.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae TW-183]
 gi|14194707|sp|Q9Z8K0|DPO3B_CHLPN RecName: Full=DNA polymerase III subunit beta
 gi|8978712|dbj|BAA98548.1| DNA polymerase III (beta chain) [Chlamydophila pneumoniae J138]
 gi|33236191|gb|AAP98280.1| DNA-directed DNA polymerase III beta chain [Chlamydophila
           pneumoniae TW-183]
          Length = 366

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +    +  G    I+ G S F L S  + +FP 
Sbjct: 61  VYEKGAISIPSKRFFQLVKEL---TEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG R
Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + ++    +     I+P KAV EI+++ S  +    + L + +I +  ++  +  +
Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +  +  +V+MPMR+
Sbjct: 350 -----------DSASGLFVIMPMRL 363


>gi|15618258|ref|NP_224543.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae CWL029]
 gi|4376617|gb|AAD18487.1| DNA Polymerase III (beta chain) [Chlamydophila pneumoniae CWL029]
          Length = 366

 Score =  280 bits (716), Expect = 3e-73,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L    + +    +  G    I+ G S F L S  + +FP 
Sbjct: 61  VYEKGAISIPSKRFFQLVKEL---TEANLEISSSAGEMAQITSGSSCFRLLSMEKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG R
Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + ++    +     I+P KAV EI+++ S  +    + L + +I +  ++  +  +
Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEAAIFLDQDKIAVECDNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +  +  +V+MPMR+
Sbjct: 350 -----------DSASGLFVIMPMRL 363


>gi|268628271|gb|ACZ13534.1| DNA polymerase III beta chain [Xenorhabdus griffiniae]
          Length = 276

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 100/282 (35%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS   +++    + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELDSD---RILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  S LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQSTLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              +ATDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TIATDGHRLAVCSMSIGQDLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGAEMEIGFNVSYILDV 276


>gi|167041927|gb|ABZ06665.1| putative DNA polymerase III beta subunit, N-terminal domain protein
           [uncultured marine microorganism HF4000_137B17]
          Length = 371

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 124/388 (31%), Positives = 225/388 (57%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+ R+  L+ L HA  IIE+K T+P+  ++L++A D  + I A+  +I  T  IP  
Sbjct: 1   MEFTISRNTFLKSLSHAYGIIEKKTTLPILSNILIEAKDSKIRITATDLDIIYTEEIPLQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   GS T SA ++YDI+RKL+   ++  F   +   ++ +  G+S F L       FP
Sbjct: 61  ELKKEGSTTTSASIIYDILRKLEPNTKVELFL--QSANKLKLVSGNSKFNLLCLSPDNFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATD 177
              E+    +FE++S+ +  L+ +T  +++ +E R+YLNGI+ H    + K  L +V+TD
Sbjct: 119 LADEDIKQKTFEISSNKMLKLLNKTKISISNDETRHYLNGIYLHKINIENKSFLSSVSTD 178

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            HRL+ + ++I +      SII+P+K + +++ +L    S++K+S ++S+I   I++  +
Sbjct: 179 SHRLSSSRLEIDSNT-DFESIILPKKTIFQLISLLEQSTSAIKISNNKSKIKFEIDNGVL 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             ++IDG FP+Y  V+P  N K L++     + +++RV+ +SS R + +K+ +S D L +
Sbjct: 238 ISKVIDGRFPDYSKVVPIDNVKILQIKLNEFKNSIERVTTVSSDRKEGLKMKISKDFLQL 297

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +V++P+ G+ IES+N  +N   MDI FN +YL++I   I      +D ++  L  + S V
Sbjct: 298 SVNSPNSGEGIESINAIFNSDDMDISFNSRYLIDIASQIE-----NDLIIINLKDAASPV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I+           +  N+F+V+MPM+I
Sbjct: 353 LIKDM---------SDKNSFHVVMPMKI 371


>gi|16752700|ref|NP_444967.1| DNA polymerase III subunit beta [Chlamydophila pneumoniae AR39]
 gi|7189343|gb|AAF38262.1| DNA polymerase III, beta subunit [Chlamydophila pneumoniae AR39]
          Length = 366

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 182/385 (47%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R+++  L+     ++ +   IPV  HVL++  +  L   A+   +       A 
Sbjct: 1   MKFVVSRNELGNLIKKIQSVVPQNTPIPVLTHVLIETYNDELVFTATDLTVSTRCVTKAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I++ +   + +V++L +      +   E+     I+ G S F L S  + +FP 
Sbjct: 61  VYEKGAISIPSKRFFQLVKELTEANLEISYSAGEMA---QITSGSSCFRLLSMEKEDFPM 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +    F L +  LK +++RT FA++ EE RY L G+   I      +  V TDG R
Sbjct: 118 LPDIQNALRFSLPAEQLKTMLQRTSFAVSREESRYVLTGVLLAIANGVATI--VGTDGKR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  + ++    +     I+P KAV EI+++ S  +    + L + +I +  ++  +  +
Sbjct: 176 LAKIDAEVTLDKSFSGEYIIPIKAVEEIIKMCSD-EGEATIFLDQDKIAVECDNTLLITK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GEFP++  VI   ++ +L ++   L   + +V++ ++    +VK S    +L +T +
Sbjct: 235 LLSGEFPDFSPVISTESNVKLDLHREELITLLKQVALFTNESSHSVKFSFLPGELTLTAN 294

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
              +G+   SM V Y+   ++I FN  + L+I+ +       D+ V   +  S +   I 
Sbjct: 295 CTKVGEGKVSMAVNYSGELLEIAFNPFFFLDILKHSK-----DELVSLGISDSYNPGIIT 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                      +  +  +V+MPMR+
Sbjct: 350 -----------DSASGLFVIMPMRL 363


>gi|310286522|ref|YP_003937780.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17]
 gi|311063461|ref|YP_003970186.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum
           PRL2010]
 gi|309250458|gb|ADO52206.1| DNA polymerase III, beta chain [Bifidobacterium bifidum S17]
 gi|310865780|gb|ADP35149.1| DnaN DNA polymerase III, beta chain [Bifidobacterium bifidum
           PRL2010]
          Length = 374

 Score =  279 bits (715), Expect = 4e-73,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 168/387 (43%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ +   P+   + L+A DG L++ A   EI     I A 
Sbjct: 1   MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L              G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEPGTALVLGKLLADITKSLPAEKTYLSTD----GSTMTINSGKSTFTMQLMPDAEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                        +      V +   A++ EE R  L G+    + +  K+   +TD  R
Sbjct: 117 LPVVPAKLGQV-DAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237
           L+ A      Q     +  + R + + ++ R L    + V    +++   L  E+     
Sbjct: 174 LSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +       +  ++   L  A+ RV++++  R   +++  S  ++ +
Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVA-ERNAPIRMVFSGQEVTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YL+E +  I      +  V  ++ ++   V
Sbjct: 293 SAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAI-----TEPFVRMKMTTAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|169830221|ref|YP_001716203.1| DNA polymerase III subunit beta [Candidatus Desulforudis
           audaxviator MP104C]
 gi|169637065|gb|ACA58571.1| DNA polymerase III, beta subunit [Candidatus Desulforudis
           audaxviator MP104C]
          Length = 389

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 95/405 (23%), Positives = 174/405 (42%), Gaps = 39/405 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-----LLEIKASGPEIEITG 55
           M+    R  +L  +    R + +K+ +     +L +A  G      + +  S  ++ I  
Sbjct: 1   MQFQTTRESLLAGITTVMRAVNQKSPVAALSGILFEAGAGEAGQQGVSLTGSNMDLTIRR 60

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            IPA V V G++ + A  L +IVR+L D         +     V +++G +   L  +  
Sbjct: 61  IIPAGVTVSGAVVLPARQLAEIVRRLPDVPV--SITADHQKNSVELTYGRARALLNGYSA 118

Query: 116 SEFPSTKE-------------EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162
           +EFP   +                       S V  NL  R  +A  T+++R    G+  
Sbjct: 119 AEFPKPADPLTRVPGGRPADAGTPRLDITAPSKVFHNLFRRVIYAAGTDDLRPIFTGVLL 178

Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILS-SKDSSVK 220
            I+E +++  AVATD HRLA+  VD   +       +IV  +A+GE++R+LS +++   +
Sbjct: 179 EIDEGEIR--AVATDTHRLAMHRVDYEGEPENRKMQVIVSGRALGELVRVLSQAEEEQFE 236

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR-VNCTNLRQAVDRVSIMS 279
           V+++E+ I  ++    +  RLI G +P+Y+ VIP  +   +  +    L Q V+R + ++
Sbjct: 237 VTIAENYIVFSVGPTRIISRLIVGTYPDYRQVIPKVHQTRVSGIEAPLLLQTVERAATLA 296

Query: 280 SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
                 + L L    L +T  + + G   E + V      ++I FN KYL E +    S 
Sbjct: 297 QDGSPVINLHLGQGLLGVTAQS-EAGSIHEEIPVELAGQELEISFNAKYLEEALRWCEST 355

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +++ D              IR                  +++P+R
Sbjct: 356 QLILD-----FHGPVGPAIIRPLGD--------GDTYLALVLPVR 387


>gi|229816227|ref|ZP_04446537.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM
           13280]
 gi|229808235|gb|EEP44027.1| hypothetical protein COLINT_03277 [Collinsella intestinalis DSM
           13280]
          Length = 367

 Score =  279 bits (715), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 182/388 (46%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S + + +    + I   +T+P+   VL++A DG+LE + S   I I   I A 
Sbjct: 1   MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + +   +L +IV+ L D        E     +V I+   S F L +    +FP 
Sbjct: 61  VDEEGQVVIPCKMLSNIVKTLPDAPVSFELAE----RQVTITCERSTFRLNTLDAGDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S EL +++L  +V R     +T++ R  LNG++  +    ++L  VATD +R
Sbjct: 117 FPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSYR 174

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV +  +          + VP  A  + L  ++    S+ +  +++++     + +   
Sbjct: 175 LAVCDTQVETSSLEGSFELNVPADAFNDAL-AITGGQGSILIGSTDTQVVFVAGNTTYVA 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCM 297
           R I+G +PNY+ ++P S    ++++   L  A+ RVS ++     AVK  +S  + ++ +
Sbjct: 234 RRIEGMYPNYKALLPASCATTVKIDVAALTSALKRVSTVA-QANSAVKFDISVETGQMML 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D   A  ++ V        I FNY Y+   ++ +S ++    E+   L S N + 
Sbjct: 293 SAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQAG 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  D         K+N  Y++MP+RI
Sbjct: 349 VFKSYD---------KINYLYLVMPVRI 367


>gi|282848765|ref|ZP_06258160.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745]
 gi|282581551|gb|EFB86939.1| DNA polymerase III, beta subunit [Veillonella parvula ATCC 17745]
          Length = 370

 Score =  279 bits (714), Expect = 5e-73,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 181/386 (46%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT  ++++ + +    ++ + K +  +   + +   +G +E++ +  E+ I   I   
Sbjct: 1   MHITFPKANLQKAINVLQKVSQNKTSSNLPGAIYMTTKNGQVELQGNDFELGIRLTIDGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V +    +++RKL       +  E+  G  + I+ G S F L +    +F  
Sbjct: 61  IKEPGTLVVGSRYFQELIRKLPGDTIELYKPED--GNSLTITSGSSEFNLVTLHPDDFSL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            ++        + S  +K L++ T++A AT+E R    G    I E ++ +  VATD HR
Sbjct: 119 VEQIHDQDHVNIDSFAMKELIDLTNYAAATDEDRPVFTGALLEIKENEVTM--VATDTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +AV ++ I          I+P K + E+ R+L + + + + +  + ++I  N ES+ +  
Sbjct: 177 MAVKKITIDEPATTPMRAIIPTKTLAEVSRLLPTDNPAMINIIWNRTQIVFNFESIYIIS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           RLI+G +P Y+ VIP   D    ++      AVDRVS+++       ++   S   + ++
Sbjct: 237 RLIEGTYPEYEKVIPSQFDSSAVIDRREFAGAVDRVSLLAKDISYNVIRYDWSESNVTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G A E + V +   P  I FN +Y+ +I+ + + D +            N  V 
Sbjct: 297 TQNTEIGMAKEDVVVEFKGTPFTISFNGRYISDILRHSTGDNIH------LFLKQNGPVV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           IR         +DN  N  YV+ P+R
Sbjct: 351 IR---------QDNNPNYTYVVTPVR 367


>gi|154492231|ref|ZP_02031857.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC
           43184]
 gi|154087456|gb|EDN86501.1| hypothetical protein PARMER_01865 [Parabacteroides merdae ATCC
           43184]
          Length = 374

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 95/371 (25%), Positives = 178/371 (47%), Gaps = 11/371 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  V  + +L  L    ++I  KN++P+    L       L I AS  E  +  ++   
Sbjct: 1   MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLVTSVDVM 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G   VSA +L D +++L +        ++ L   ++  +G  NF  Q   ++   
Sbjct: 61  NAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK-GDTYPQ 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S  + + +L N + R+ FA A +E+R  +NGI+F I+ +DL    VA+DGH
Sbjct: 120 QKPLNENAISIMMDAQMLLNGISRSLFATADDELRPVMNGIYFDIHTDDLTF--VASDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +L V   ++  +  +  S I+P+K    +  +LS +   V +   ++  ++N  +  M  
Sbjct: 178 KL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEGEMVSIKFDDNNAYINCANFEMVC 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G +PNY +VIP  N  ++ ++  +   A+ RVS+ S+     VKL L  +++ ++ 
Sbjct: 237 RLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLQLKENEMLVSA 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D    A E +   ++   + I F   YL+EI+ NI+S     +EV+  L   + +  
Sbjct: 297 QDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINS-----EEVILELADPSRAGL 351

Query: 359 IRGKDKDSKNN 369
           I   + +   +
Sbjct: 352 IVPSENEENED 362


>gi|225848547|ref|YP_002728710.1| DNA polymerase III subunit beta [Sulfurihydrogenibium azorense
           Az-Fu1]
 gi|225643105|gb|ACN98155.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium azorense
           Az-Fu1]
          Length = 362

 Score =  279 bits (713), Expect = 6e-73,   Method: Composition-based stats.
 Identities = 111/385 (28%), Positives = 192/385 (49%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V++    + +     I E+K  +PV  + LL+A +G L I+ +  E+  T  I A 
Sbjct: 1   MDIIVDKKSFQDAVKKV--IAEKKAALPVLTNFLLKAENGKLIIQGTDLEVFTTYWINAD 58

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ V+A  L DI + L   +      +N     + I  G + + L +    +FP 
Sbjct: 59  VKEEGSVCVNAKKLTDISKVLPAASVSLTLDKNN----LKIVSGKTKYSLPTTDPEDFPV 114

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E     +  ++   L   + +T +A + +E R+ LNG+ F   E+   L  VATDGHR
Sbjct: 115 FEEFPADLAVRVSGDTLLKGITKTVYAASKDESRFALNGVCFSFVEK--YLDFVATDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ + ++     +    IVP+KA+ EI +++S  D  V+V++S S I        +S R
Sbjct: 173 LALYKGEVSGGSIE-GKYIVPQKALSEIKKLVSEYD-DVEVAISGSSIFFKGSDWMLSAR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FP+Y  VIP S + E+ V   ++  +V RV +      + +KL+L  +KL ++  
Sbjct: 231 LLEGVFPDYTQVIPKSFNIEVEVLKGDILDSVKRVVVAEESDAKPIKLTLKENKLIISTP 290

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             +   A + +++ YN+   +I FN KY+++ I     DE+ D ++V +  + +S   I 
Sbjct: 291 TVEDAYAEDEIDIEYNQEEFEIGFNGKYIIDAI-----DEIEDSKIVLKFINKDSQTVIV 345

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            KD+              V+MPM I
Sbjct: 346 PKDESEP--------YLAVVMPMNI 362


>gi|268628267|gb|ACZ13532.1| DNA polymerase III beta chain [Xenorhabdus kozodoii]
          Length = 276

 Score =  279 bits (713), Expect = 7e-73,   Method: Composition-based stats.
 Identities = 98/271 (36%), Positives = 162/271 (59%), Gaps = 6/271 (2%)

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G+ TV A   +DI R L DGA+IS   +   G  + +  G S F L + P ++FP+ 
Sbjct: 12  HEQGATTVPARKFFDIWRGLPDGAEISVELD---GDRILVRSGRSRFSLSTLPATDFPNL 68

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   +ATDGHRL
Sbjct: 69  DDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TIATDGHRL 126

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           AV  ++I   +    S+IVPRK V E++R+L   D+ +++ +  + I  ++     + +L
Sbjct: 127 AVCSMNIGQNLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRAHVGDFIFTSKL 185

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ LS ++L +T +N
Sbjct: 186 VDGRFPDYRRVLPKNPDKILEANCDMLKQAFSRAAILSNEKFRGVRIYLSENQLRITANN 245

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           P+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 246 PEQEEAEEIVDVSYQGTEMEIGFNVSYILDV 276


>gi|325124857|gb|ADY84187.1| DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           bulgaricus 2038]
          Length = 375

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 108/392 (27%), Positives = 188/392 (47%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV+R+  +  L    + +  +  IP+   + L   +  L +  S  +I I  + P S
Sbjct: 1   MKFTVQRNLFINDLNSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPIS 60

Query: 61  ----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               V+  GSI V+AHL  +IVRKL         KE   G ++ I+   +++ +     S
Sbjct: 61  DDLRVESTGSIVVTAHLFSEIVRKLPGREFTFEVKE---GNQIQITSDKADYVINGLDAS 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            +P   E     SF L S  L+ L+ +T FA++TEE R  L G+ F      +K  AVAT
Sbjct: 118 AYPRLPEI-AGTSFSLPSKTLRELITQTVFAVSTEESRPTLTGVNFSFKNGQIK--AVAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D HRL+   VDI A  ++  S+I+P K + E+ +I+   D  +KV L +S+I    E+LS
Sbjct: 175 DSHRLSQRIVDIAAGPSEGLSLIIPGKNLQELAQIIGDADQDIKVYLGDSQIRFEFENLS 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS--SD 293
              RL++G +P+   ++P  +   ++   ++L Q + R S+++ + R  AV+++L+    
Sbjct: 235 FYTRLLEGVYPDVDRLLPTESTTSVQFTVSDLMQTLSRASLLTHANRTNAVQMTLNVADQ 294

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + ++ ++P++GK  E +         M I FN  Y+   +        V D V+     
Sbjct: 295 TVLVSGNSPEVGKIEEEVGFSSLTGRDMTISFNPDYMAAALRA-----SVTDSVIINFTE 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   D+  +           ++ P+R
Sbjct: 350 SLRPFTVVPNDQSVE--------FVQLITPIR 373


>gi|268628269|gb|ACZ13533.1| DNA polymerase III beta chain [Xenorhabdus ehlersii]
          Length = 276

 Score =  278 bits (712), Expect = 9e-73,   Method: Composition-based stats.
 Identities = 98/282 (34%), Positives = 165/282 (58%), Gaps = 7/282 (2%)

Query: 52  EITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           E+   +        G+ TV A   +DI R L DGA+IS   +++    + +  G S F L
Sbjct: 1   EMKARVTLTQPHEQGATTVPARKFFDIWRGLPDGAEISVELDSD---RILVRSGRSRFSL 57

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
            + P S+FP+  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+
Sbjct: 58  STLPASDFPNLDDWQSEVEFSLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR 117

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
              ++TDGHRLAV  + I   +    S+IVPRK V E++R+L   D+ +++ +  + I  
Sbjct: 118 --TISTDGHRLAVCSMSIGQDLP-SHSVIVPRKGVIELMRLLDGGDNPLQLQIGSNNIRA 174

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
           ++     + +L+DG FP+Y+ V+P + DK L  NC  L+QA  R +I+S+ + + V++ L
Sbjct: 175 HVGDFIFTSKLVDGRFPDYRRVLPKNPDKTLEANCDMLKQAFSRAAILSNEKFRGVRIYL 234

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
           S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++
Sbjct: 235 SENQLRITANNPEQEEAEEIVDVSYQGTEMEIGFNVSYILDV 276


>gi|218261816|ref|ZP_03476531.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii
           DSM 18315]
 gi|218223762|gb|EEC96412.1| hypothetical protein PRABACTJOHN_02202 [Parabacteroides johnsonii
           DSM 18315]
          Length = 374

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 177/371 (47%), Gaps = 11/371 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  V  + +L  L    ++I  KN++P+    L       L I AS  E  +  ++   
Sbjct: 1   MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNKLTITASDAETRLVTSVDVM 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G   VSA +L D +++L +        ++ L   ++  +G  NF  Q   ++   
Sbjct: 61  NAQGSGLFAVSAKILLDPLKELPEQPLTFDINDDNLEIFIHFQNGKYNFIGQK-GDTYPQ 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S  + + +L N + R  FA A +E+R  +NGI+F I+ +DL    VA+DGH
Sbjct: 120 QKPLNDNAISIMMDAQMLLNGISRALFATADDELRPVMNGIYFDIHTDDLTF--VASDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +L V   ++  +  +  S I+P+K    +  +LS ++  + +   ++  ++N  +  M  
Sbjct: 178 KL-VRLRNLSVKSPERASFILPKKPANLLKGLLSKEEGMISIKFDDNNAYVNCANFEMVC 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G +PNY +VIP  N  ++ ++  +   A+ RVS+ S+     VKL L   ++ ++ 
Sbjct: 237 RLIEGRYPNYNSVIPQENPFKVTIDRVSFLNALKRVSVFSNPASSLVKLQLKESEMLVSA 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D    A E +   ++   + I F   YL+EI+ NI+S     +EV+  L   + +  
Sbjct: 297 QDIDFSTSAEEKIVCSFDGTELSIGFKATYLIEILSNINS-----EEVILELADPSRAGL 351

Query: 359 IRGKDKDSKNN 369
           I   + +   +
Sbjct: 352 IVPSENEENED 362


>gi|224283953|ref|ZP_03647275.1| DNA polymerase III subunit beta [Bifidobacterium bifidum NCIMB
           41171]
 gi|313141105|ref|ZP_07803298.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
 gi|313133615|gb|EFR51232.1| DNA polymerase III [Bifidobacterium bifidum NCIMB 41171]
          Length = 374

 Score =  278 bits (711), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 168/387 (43%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++ + + + +    R+I+ +   P+   + L+A DG L++ A   EI     I A 
Sbjct: 1   MKVEIDSAALADAVAWTTRVIDARPASPILAGIQLEAIDGTLQLSAFNYEISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L              G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEPGTALVLGKLLADITKSLPAEKTYLSTD----GSTMTINSGKSTFTMQLMPDAEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                        +      V +   A++ EE R  L G+    + +  K+   +TD  R
Sbjct: 117 LPVVPAKLGQV-DAPTFIQAVTQASVAVSREENRPVLTGVRMQFDGD--KVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIES--LSM 237
           L+ A      Q     +  + R + + ++ R L    + V    +++   L  E+     
Sbjct: 174 LSRATFTWTPQNIDTSTTTLVRGSLLRDVARALDDHQNVVIDFDADNPTLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +       +  ++   L  A+ RV++++  R   +++  S  ++ +
Sbjct: 234 TSQLIDGEFPAVDRLFADEYPIQAVIDKQLLIAAIKRVALVA-ERNAPIRMVFSGQEVTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YL+E +  I      +  V  ++ ++   V
Sbjct: 293 SAGAVDEAQAQEMLDIDMDGEDITVAFNPSYLIEGLSAI-----TEPFVRMKMITAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|308095428|ref|ZP_07663276.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
 gi|308087823|gb|EFO37518.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
          Length = 287

 Score =  277 bits (710), Expect = 1e-72,   Method: Composition-based stats.
 Identities = 92/284 (32%), Positives = 168/284 (59%), Gaps = 7/284 (2%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++L++  + +L + A+  E+E+   +    D   GSITV +    DI R L 
Sbjct: 4   RPTLPILGNLLIKVEENVLSMTATDLEVELVSKVTLEGDFEAGSITVPSRKFLDICRGLP 63

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           D A I+F  E   G  V +  G S F L + P ++FP+ ++ +      L+ + L+ L++
Sbjct: 64  DDAIITFVLE---GDRVQVRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLID 120

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
           +T F+MA +++RYYLNG+ F I  +   L +VATDGHR+AV++  + A  A+   IIVPR
Sbjct: 121 KTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGHRMAVSQTQLGADFAQ-KQIIVPR 177

Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262
           K V E+++++ + +  V + +  S +   + +   + +L+DG FP+Y+ V+P   +K L 
Sbjct: 178 KGVQELVKLMDAPEQPVVLQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLI 237

Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
            +C  LRQA  R +I+S+ + + V+++L+  ++ +T +NP+  K
Sbjct: 238 ASCDELRQAFSRAAILSNEKFRGVRVNLAGSEMRITANNPEQKK 281


>gi|167010109|ref|ZP_02275040.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           holarctica FSC200]
          Length = 344

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 115/364 (31%), Positives = 208/364 (57%), Gaps = 22/364 (6%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQD 83
           K+T+P+   +L   ++  L+I AS  + EI+  I  S +    + ++A  +Y+IVR L +
Sbjct: 1   KSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVSCNTTIKLALNADKIYNIVRSLNE 60

Query: 84  GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELASSVLKNLVE 142
            + I F        +V I   +S F L S     +P          SF+L+     +++ 
Sbjct: 61  NSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPLIDSNINEQASFDLSQQDFHHIIS 117

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS-IIVP 201
           +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGHR+++ E  I +++    S  I+P
Sbjct: 118 KVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGHRMSITEAIIDSKVLDSASQSIIP 175

Query: 202 RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261
           +KA+ E+ +I+   + ++K+ L ++ +     + +   +LIDG +P+YQ VIP +N K L
Sbjct: 176 KKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFISKLIDGRYPDYQKVIPKNNTKLL 235

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321
            V+    + ++ R SI+++ + + V+L++S ++L ++ +NPD  KA + + V YN+ PM+
Sbjct: 236 AVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLSANNPDNEKAEDKIEVQYNDQPME 295

Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
           ICFNYKYLL+II+ +S     ++ +   LD+ N S  +          KD K N+ +++M
Sbjct: 296 ICFNYKYLLDIINVLS-----EETMSIYLDNPNMSALV----------KDEKDNSLFIIM 340

Query: 382 PMRI 385
           PM+I
Sbjct: 341 PMKI 344


>gi|210634751|ref|ZP_03298279.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279]
 gi|210158691|gb|EEA89662.1| hypothetical protein COLSTE_02206 [Collinsella stercoris DSM 13279]
          Length = 367

 Score =  277 bits (710), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 181/388 (46%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +S + + +    + I   +T+P+   VL++A DG+LE + S   I I   I A 
Sbjct: 1   MKFTVSQSALSDAIAVVMKGIAPSSTLPILSGVLVRAADGVLEFQTSNYTISIRHRIAAR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + +   +L +IV+ L D        E     +V I+   S F L +    +FP 
Sbjct: 61  VDEEGQVVIPCKMLSNIVKTLPDAPVEFELSE----RQVTITCERSAFRLNTLDAGDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S EL +++L  +V R     +T++ R  LNG++  +    ++L  VATD +R
Sbjct: 117 FPTFALERSVELPANILTEMVGRVWRVTSTDKNRPVLNGVYMTVENNTIRL--VATDSYR 174

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV +  +          + VP  A  + L  ++    S+ +  +++++     + +   
Sbjct: 175 LAVCDTQVETSTLEGSFELNVPADAFNDAL-AITGGQGSILIGSTDTQVVFVAGNTTYVA 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCM 297
           R I+G +PNY+ ++P +    ++++   L  A+ RVS ++     AVK  +S  +  + +
Sbjct: 234 RRIEGVYPNYKALLPAACATTVKIDVAALTSALKRVSTVA-QANSAVKFDISTETGSMVL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D   A  ++ V        I FNY Y+   ++ +S ++    E+   L S N + 
Sbjct: 293 SAISNDQDAATATVEVEAEGASGVIAFNYHYIFGCLNVLSREK----EITLELQSYNQAG 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  D         K+N  Y++MP+RI
Sbjct: 349 VFKSYD---------KINYLYLVMPVRI 367


>gi|150007344|ref|YP_001302087.1| DNA polymerase III subunit beta [Parabacteroides distasonis ATCC
           8503]
 gi|255014025|ref|ZP_05286151.1| DNA polymerase III beta chain [Bacteroides sp. 2_1_7]
 gi|256839635|ref|ZP_05545144.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13]
 gi|262382081|ref|ZP_06075219.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B]
 gi|298375332|ref|ZP_06985289.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
 gi|301310654|ref|ZP_07216593.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3]
 gi|149935768|gb|ABR42465.1| DNA polymerase III beta chain [Parabacteroides distasonis ATCC
           8503]
 gi|256738565|gb|EEU51890.1| DNA polymerase III, beta subunit [Parabacteroides sp. D13]
 gi|262297258|gb|EEY85188.1| DNA polymerase III, beta subunit [Bacteroides sp. 2_1_33B]
 gi|298267832|gb|EFI09488.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
 gi|300832228|gb|EFK62859.1| DNA polymerase III, beta subunit [Bacteroides sp. 20_3]
          Length = 374

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 93/371 (25%), Positives = 174/371 (46%), Gaps = 11/371 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  V  + +L  L    ++I  KN++P+    L       L + AS  E  +  ++   
Sbjct: 1   MRFDVSSTALLSRLQSISKVIASKNSLPILDSFLFNLEGNTLTVTASDAETRLVTSVDVM 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G   VSA +L D +++L +        +  L   ++  +G  NF  Q   ++   
Sbjct: 61  NAQGAGLFAVSAKILLDPLKELPEQPLTFDINDENLEIFIHFQNGKYNFIGQK-GDTYPQ 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S  + + +L N + R+ FA A +E+R  +NG++F I+ +DL    VA+DGH
Sbjct: 120 QKPLNDNAISISMDAQMLLNGISRSLFATADDELRPVMNGVYFDIHTDDLTF--VASDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +L V   ++  +  +  S I+P+K    +  +L+ +   V +   ++  ++   +  M  
Sbjct: 178 KL-VRLRNLAVKSPERASFILPKKPANLLKNLLAKESEQVLIKFDDNNAYITCTNFEMVC 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G +PNY +VIP  N  ++ ++  +   A+ RVS+ S+     VKL L    + ++ 
Sbjct: 237 RLIEGRYPNYNSVIPQENPFKVTIDRISFLNALKRVSVFSNPASSLVKLHLKDSLITVSA 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D    A E +   ++   + I F   YL+EI+ NISS     +EVV  L   + +  
Sbjct: 297 QDIDFSTSAEERIVCQFDGTELSIGFKATYLIEILGNISS-----EEVVLELADPSRAGL 351

Query: 359 IRGKDKDSKNN 369
           I   + D   +
Sbjct: 352 IVPSENDEDED 362


>gi|328954616|ref|YP_004371949.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2]
 gi|328454940|gb|AEB06134.1| DNA polymerase III, beta subunit [Coriobacterium glomerans PW2]
          Length = 367

 Score =  277 bits (709), Expect = 2e-72,   Method: Composition-based stats.
 Identities = 98/388 (25%), Positives = 176/388 (45%), Gaps = 24/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV ++ + E L    + +   +T+P+   VL+ A DG+LE + S   I I   I A 
Sbjct: 1   MEFTVSQNALSEALAIVSKGVASASTLPILSGVLITAGDGVLEFQTSNYTISIRHRIAAH 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ V    L +I + L D        E     +VNI+   S F L +   ++FP 
Sbjct: 61  VEKDGSLVVPCKTLSNITKTLPDAPVRFQLVE----RQVNITCEKSTFRLNTLDAADFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   + EL S  L ++V R     +T++ R  L G+   +    ++L  VATD  R
Sbjct: 117 FPTYALESAVELPSRTLTDMVARVWRVTSTDKARPILGGVHMTVENNTIRL--VATDSFR 174

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV +  +          + VP  A  + L I+ S+  ++ V  +++++       +   
Sbjct: 175 LAVCDTQVETSSLEGSFELNVPADAFNDALTIM-SEQQTILVGATDTQVVFEAGDTTYVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCM 297
           R I+G +PNY  +IP S    ++++   +  A+ RVS ++S    AVK ++      L +
Sbjct: 234 RRIEGVYPNYNQLIPDSCTTSVKIDVEAITAALKRVSAIAS-TNPAVKFAIDVERGSLAL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  + D   A E ++V        I FNY Y+   ++ ++ ++    E+   L +   + 
Sbjct: 293 SAISSDQDLAQEIIDVEAEGESGVIAFNYHYIFGCLNVLAKEQ----EISLELKNYTQAG 348

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +            K+N  Y++MP+RI
Sbjct: 349 VFKS---------YGKINYLYLVMPVRI 367


>gi|306843604|ref|ZP_07476205.1| DNA polymerase III, beta subunit [Brucella sp. BO1]
 gi|306276295|gb|EFM57995.1| DNA polymerase III, beta subunit [Brucella sp. BO1]
          Length = 275

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 124/289 (42%), Positives = 179/289 (61%), Gaps = 16/289 (5%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           +++  G S+F LQ  P+S+FP      + +SF + +  LK L++RT FA++TEE RYYLN
Sbjct: 1   MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIEAQALKRLIDRTQFAISTEETRYYLN 60

Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           GIFFH  E D  LKL AVATDGHRLA AE++  +    MP II+PRK V E+ +++   D
Sbjct: 61  GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             V V LS+++I   + S+ ++ +LIDG FP+YQ VIP  NDK+L ++  +   +VDRVS
Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQDFAASVDRVS 180

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
            +SS R +AVKLS++  +L +TV+NPD G A + +   Y+  P+DI FN KYLL+I   +
Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITGQL 240

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +      VF L  + S   +R    +         +  YVLMPMR+
Sbjct: 241 SGTD-----AVFMLADAGSPTLVRDTGDE---------DVLYVLMPMRV 275



 Score = 38.7 bits (89), Expect = 1.8,   Method: Composition-based stats.
 Identities = 19/93 (20%), Positives = 33/93 (35%), Gaps = 7/93 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI-EITGAIPAS 60
           K+T++R D    +     I   +        V L   DG L +  + P+    T  + A 
Sbjct: 164 KLTIDRQDFAASVDRVSTISSERG-----RAVKLSIADGQLTLTVNNPDSGSATDELAAD 218

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
            D     I  ++  L DI  +L     +    +
Sbjct: 219 YDGDPLDIGFNSKYLLDITGQLSGTDAVFMLAD 251


>gi|317054733|ref|YP_004103200.1| DNA polymerase III subunit beta [Ruminococcus albus 7]
 gi|315447002|gb|ADU20566.1| DNA polymerase III, beta subunit [Ruminococcus albus 7]
          Length = 368

 Score =  277 bits (708), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/387 (23%), Positives = 179/387 (46%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +  + + + +  + +  ++T+P    +     D LLE+     E+ I   I   
Sbjct: 1   MKFICTKQTLYDAIVNVSKAVSERSTLPSLEGIKFSLADSLLELTGYNLEMGIRTVISVR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS  ++A L  ++++K+     +    +     +V IS G + F + +    ++P 
Sbjct: 61  SDDKGSCIINARLFSEMIKKMSADEVLIDISD---SYQVTISGGVTKFNMFAASAEDYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E++      ++  VLKN++ +T FA+A  E +  L G  F I    L L  VA DG+R
Sbjct: 118 LPEKDSETQIPISQPVLKNMIAQTKFAVALTEDKPILKGELFDIENNTLTL--VAIDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +AV    +    A+    +VP K++ EI  +LS  +D +V +  S   I  +I    +  
Sbjct: 176 MAVRYEPVK--YAEQIKFVVPSKSLSEIQGLLSDNEDDTVYIHPSRKHIIFDIGGYMVYS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMT 298
           RL++G+F  Y++ IP S++ ++ V+   L   ++R  ++ + R    V+    +D + + 
Sbjct: 234 RLLEGDFHPYKSAIPNSSNTDVVVDRKELISTLERAMLLINDRSPSPVRCFFENDHVKIN 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +GK  + ++       ++I F  KYLL+ +  I      D++V  R+  S  ++ 
Sbjct: 294 CTTA-LGKISDEISADIAGPVIEIGFKCKYLLDPLKVIE-----DEKVKLRMGGSLLAMK 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + +            Y+++P+R+
Sbjct: 348 IVPCEGE---------KYTYLVLPVRL 365


>gi|288922085|ref|ZP_06416290.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
 gi|288346562|gb|EFC80886.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
          Length = 391

 Score =  276 bits (707), Expect = 3e-72,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 173/402 (43%), Gaps = 30/402 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNT--IPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           M++TV+R  + +L+  A R +  K T  + V   +LL+A+   L + A   E+  TGA  
Sbjct: 1   MRLTVDRDSLADLVPWAARTLPSKATTQLQVLAGLLLEADGSALRVSAYDYEVATTGAAD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V   G   V+  +L D+V+ L              GT + I+ G ++F L   P  ++
Sbjct: 61  ARVVEEGRALVNGKMLADLVKSLPKARVELAVD----GTRLTITSGSASFKLPMLPSEDY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+      +    + + +    V +   A   ++    L GI    + + + L   ATD 
Sbjct: 117 PALPPMPDLLG-TVDAGLFVTAVGQVGIAAGRDDTLPVLTGIRVEFSPKTITL--AATDR 173

Query: 179 HRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR--------- 227
           +RLAV  +            ++++P + + +I R  ++ +  + ++ +  +         
Sbjct: 174 YRLAVRTIPWEPAPDADLTLTLLIPARTLSDIAR--AAGEGRITIAAAGQKKAEGRGSGE 231

Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
                 ++     + RLI+G FP Y+ ++P S      V    L  AV RV++++S R  
Sbjct: 232 PASAGFDVAGRQTTTRLIEGTFPPYRKLLPDSTPLIAEVEIPPLAAAVKRVALVAS-RTA 290

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            V+L+ +   L +        +A E++ V Y+   + + FN  YLL+    I  D V   
Sbjct: 291 PVQLTFAPGLLALEAGAGGEAQASETLAVAYDGPELKVSFNPAYLLDAAGAIEDDLVRFG 350

Query: 345 EVVFRLD-SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 + ++     + GK   +  +     +  Y+LMP+R+
Sbjct: 351 FATEEPEIAAVKPAILTGK---TGGDPAEIPDYRYLLMPIRL 389


>gi|297616216|ref|YP_003701375.1| DNA polymerase III subunit beta [Syntrophothermus lipocalidus DSM
           12680]
 gi|297144053|gb|ADI00810.1| DNA polymerase III, beta subunit [Syntrophothermus lipocalidus DSM
           12680]
          Length = 382

 Score =  276 bits (706), Expect = 4e-72,   Method: Composition-based stats.
 Identities = 96/395 (24%), Positives = 185/395 (46%), Gaps = 28/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG-LLEIKASGPEIEITG-AIP 58
           MK ++ + ++  +     R    + T+PV   +LL+A+    L +  +  EI ++   + 
Sbjct: 1   MKFSINQPELARVAALVQRAASTRETVPVLSGLLLKASATTGLSMTCTDLEIALSAHTLE 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G+  V+A    D+VR L +  +I    ++E  + + +++G S  +L  +   EF
Sbjct: 61  ANVIEEGTALVNARYFADLVRYLPN-IEIQVLTDDE-NSRLTVNYGRSQTHLHLYNPQEF 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P T  +E      +    LK L+ +T FA A    +    G+ F    + L++  VA+D 
Sbjct: 119 PETGRQEPTPLLSVPQKTLKELLRKTSFAAAVNHFKQVFTGVLFDFTPDQLRV--VASDT 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE--SLS 236
           HRLA+  + + +   +   +++P + V E++RIL   +  V   L+ + I    E     
Sbjct: 177 HRLAMMSLAMSSTHTEPRQLVIPSRTVAELIRILEDSEKEVSCGLAGNNIVFTCEEPGFQ 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM------SSVRIQAVKLSL 290
           ++ RL++G++PNY  VIP +    +++    L  A++R  +M      S   I+ V L L
Sbjct: 237 LTSRLLEGQYPNYLPVIPGNFVSTVKLEPGPLANALERAVLMPTDKQSSKQPIRHVTLEL 296

Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
              +L ++  +  MG+  E + ++       + I FN +YLL++I  +  +      +  
Sbjct: 297 KDRELRVSAYSQKMGELQEVLEDISVEGESNIQISFNTRYLLDVIKVLQGECTT---ISL 353

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   S S   I+   KD         +  YVL+P+
Sbjct: 354 KFTGSLSPALIQDPCKD---------DYLYVLVPL 379


>gi|313204262|ref|YP_004042919.1| DNA polymerase iii, beta subunit [Paludibacter propionicigenes WB4]
 gi|312443578|gb|ADQ79934.1| DNA polymerase III, beta subunit [Paludibacter propionicigenes WB4]
          Length = 378

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 90/375 (24%), Positives = 173/375 (46%), Gaps = 15/375 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  +D+L  L    R+I  KN++P+  + L       L + AS  E  +  ++   
Sbjct: 1   MKFIVSSTDLLSHLQAISRVINNKNSLPILDNFLFHLEGKTLTMTASDIETTLITSMEVE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G + V++ LL D +R+  +      F  N+    + I+  + ++        E+P
Sbjct: 61  SADGNGKVAVASRLLLDTLREFSEQP--LTFSINDSNLAMVITSANGSYNFIGQNGDEYP 118

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              + +    S  L  S L   + +T F  A +E+R  +NG+FF I  + L L  VATD 
Sbjct: 119 RLPQLQDDAQSLTLPVSTLSAGISKTLFCTADDELRPVMNGVFFDIVADSLTL--VATDA 176

Query: 179 HRLAVA---EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           H+L            +  +  + I+P+K    +  IL  +   V++       H  + + 
Sbjct: 177 HKLVRYKTSHTSASVEGEETVNFILPKKPANMLKNILPRESGEVEIRFDNKNAHFKLANY 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           +M  R ++G +PNY  VIP SN  ++ ++   L  A+ RVS+ ++     VKL+   +++
Sbjct: 237 TMICRQVEGRYPNYNGVIPKSNPFKIIIDRVTLLNALKRVSVFANQASNLVKLAFGQNQI 296

Query: 296 CMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            ++  + D    A E++   ++  P+ I F   +L+EI+ NI++ +     ++F L  ++
Sbjct: 297 HISAQDIDFSISAEETITCQFDADPIKIGFKSSFLIEILGNINATD-----IIFELSDAS 351

Query: 355 SSVFIRGKDKDSKNN 369
            +  I   + ++   
Sbjct: 352 RAGLILPFENEANEE 366


>gi|301060276|ref|ZP_07201142.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2]
 gi|300445619|gb|EFK09518.1| DNA polymerase III, beta subunit [delta proteobacterium NaphS2]
          Length = 371

 Score =  276 bits (706), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 195/389 (50%), Gaps = 22/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++R ++L+ +     IIE+K+ +PV   +L  A++  + I A+  E+     I A 
Sbjct: 1   MEIKIDRDELLKSVSKVQSIIEKKSNMPVLSTILFTADNATVRISATDLELGFQETINAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSIT+S   +++I+++ +        KEN     + IS G + F L S P  EFP+
Sbjct: 61  ILEEGSITLSGRKIFEILKETRSSELHIKEKEN---NWIFISDGVARFNLASIPPDEFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK--LCAVATDG 178
             E E V    +    L +++ +T +A+  EE  + L+G+       D K  L  VATDG
Sbjct: 118 FMEPEGVSMVSIEGETLVDMINKTIYAVTAEEAGFKLSGVLTEKLSIDGKNLLRMVATDG 177

Query: 179 HRLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++ +  +     +     +++P+K + E+ ++ +    +V++   +        +  
Sbjct: 178 HRLSLIDKPLENLETLELSAGVMIPKKGMSELNKMAADG-GTVEIGFKDKNCVAKKGNAF 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RL++  FP+Y+ VI  +    + +    L  A+ ++ I+S+ R +AVK++L +D + 
Sbjct: 237 LVMRLLETNFPDYKAVIVKNEKDPVDIGKAVLMDAMRKMLILSNERYRAVKITLENDVMD 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   NPD+G+A E++ + Y+   ++  FN K+ ++ + ++ S+ +  D        S+  
Sbjct: 297 LVSTNPDLGEAQENLEIKYSGERVEAGFNPKFFIDTLQSMQSETIHLD-----FTDSSKP 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + G         D       ++MPMR+
Sbjct: 352 FVLTG---------DMDEGFIGLIMPMRV 371


>gi|325279749|ref|YP_004252291.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM
           20712]
 gi|324311558|gb|ADY32111.1| DNA polymerase III, beta subunit [Odoribacter splanchnicus DSM
           20712]
          Length = 374

 Score =  275 bits (705), Expect = 5e-72,   Method: Composition-based stats.
 Identities = 89/373 (23%), Positives = 162/373 (43%), Gaps = 12/373 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L  L    ++I  K   P+  ++LL A +G+L   AS  E  +   I   
Sbjct: 1   MKFVVSSNTLLTRLQAVSKVIGGKPVQPILDNILLVATEGVLYATASDKETTMEARIELE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G IT+ A +L DI+++  +      F+ N    EV I      F +      ++P
Sbjct: 61  SLEEEGKITIPAKILLDILKEFPEQP--LTFEINTETNEVKIISEKGEFSVPGESAEDYP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                 +          ++   + +T FA A +++R  +N I   +NE++     VA+D 
Sbjct: 119 IQAALNDSSNDLTSKCGLILEGIVKTIFATANDDLRPVMNCILIEMNEDN--FTFVASDA 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   +           S+I+P+K    +  IL   DS +K+S ++           M+
Sbjct: 177 HKLVRYKRFDAKSENGQFSLILPKKPALMLKNILPKDDSELKISFNDKMACFVFGDYKMT 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             L++G FPNY +VIP +N K++ +    L  ++ RVS+M++     VK  ++  K+ ++
Sbjct: 237 STLVEGRFPNYNSVIPQNNPKKIIIEKKELYNSLRRVSVMANQASNLVKFDVAEGKIVIS 296

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D      E++   Y    + I F   ++LEI+ NI S     + VV  L       
Sbjct: 297 AQDMDYSMSGHETLTCQYEGENIAIGFKSPFVLEILSNIES-----ENVVLELSDPTRPG 351

Query: 358 FIRGKDKDSKNNK 370
                + +  +  
Sbjct: 352 LFLPFENEDNDED 364


>gi|306842703|ref|ZP_07475346.1| DNA polymerase III, beta subunit [Brucella sp. BO2]
 gi|306287149|gb|EFM58651.1| DNA polymerase III, beta subunit [Brucella sp. BO2]
          Length = 275

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 124/289 (42%), Positives = 178/289 (61%), Gaps = 16/289 (5%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           +++  G S+F LQ  P+S+FP      + +SF + +  LK L++RT FA++TEE RYYLN
Sbjct: 1   MSVISGKSSFRLQCLPQSDFPELTAGAFTHSFRIDAQALKRLIDRTQFAISTEETRYYLN 60

Query: 159 GIFFHINEED--LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           GIFFH  E D  LKL AVATDGHRLA AE++  +    MP II+PRK V E+ +++   D
Sbjct: 61  GIFFHAIESDGALKLRAVATDGHRLARAELEAPSGTEGMPGIIIPRKTVAELQKLVDVPD 120

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
             V V LS+++I   + S+ ++ +LIDG FP+YQ VIP  NDK+L ++      +VDRVS
Sbjct: 121 VVVTVELSDAKIRFTVGSVVLTSKLIDGTFPDYQRVIPSGNDKKLTIDRQGFAASVDRVS 180

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI 336
            +SS R +AVKLS++  +L +TV+NPD G A + +   Y+  P+DI FN KYLL+I   +
Sbjct: 181 TISSERGRAVKLSIADGQLTLTVNNPDSGSATDELAADYDGDPLDIGFNSKYLLDITSQL 240

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +      VF L  + S   +R    +         +  YVLMPMR+
Sbjct: 241 SGTD-----AVFMLADAGSPTLVRDTGDE---------DVLYVLMPMRV 275



 Score = 36.8 bits (84), Expect = 5.5,   Method: Composition-based stats.
 Identities = 18/93 (19%), Positives = 32/93 (34%), Gaps = 7/93 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI-EITGAIPAS 60
           K+T++R      +     I   +        V L   DG L +  + P+    T  + A 
Sbjct: 164 KLTIDRQGFAASVDRVSTISSERG-----RAVKLSIADGQLTLTVNNPDSGSATDELAAD 218

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
            D     I  ++  L DI  +L     +    +
Sbjct: 219 YDGDPLDIGFNSKYLLDITSQLSGTDAVFMLAD 251


>gi|283782561|ref|YP_003373315.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05]
 gi|283441379|gb|ADB13845.1| DNA polymerase III, beta subunit [Gardnerella vaginalis 409-05]
          Length = 374

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 164/387 (42%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + ++A +G L++ A   +I     I A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI +   L+ DI + L         + N     + I+ G S F LQ  P  E+P 
Sbjct: 61  VDEEGSILILGKLMADITKSLPAEKTYLKSENNT----LTITSGKSTFTLQLMPLGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E  +       +      V +   + + EE R  L GI     ++   +   +TD  R
Sbjct: 117 LPELPHKLGQV-DAPTFIQAVNQASVSTSREENRPVLTGIRIQFEDD--TVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237
           L+ +      +   + S  + R ++   +        +V +  +E   S +       + 
Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTRGSLLRDIAHSLDDHQNVIIHFNEEDKSLLGFENSGRTS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDGEFP+   +          +N   L  A+ RVS+++  R   +++  S+ +L +
Sbjct: 234 TSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVA-ERNAPIRMIFSNQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YLLE +  I      +  V  ++ ++   V
Sbjct: 293 SAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMKMATAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +   ++ D   +  Y+L+PMR
Sbjct: 348 EFNGQQE---SDGDESTDYRYLLVPMR 371


>gi|324991865|gb|EGC23788.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK405]
 gi|324996245|gb|EGC28155.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK678]
 gi|325698031|gb|EGD39912.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK160]
 gi|327458489|gb|EGF04839.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1]
 gi|327471609|gb|EGF17052.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK408]
          Length = 378

 Score =  275 bits (705), Expect = 6e-72,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+  +V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSNVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|269216527|ref|ZP_06160381.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122]
 gi|269130056|gb|EEZ61138.1| DNA polymerase III, beta subunit [Slackia exigua ATCC 700122]
          Length = 364

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 175/387 (45%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +++ L  LG A + I  ++TIP+   V ++     LE+K +  E  I   + A 
Sbjct: 1   MKFSINKTEFLNALGIAGKGIASRSTIPILSGVYIKTLGTSLELKGTDSERAIRCTVSAL 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G   V   LLYDIV+   D A      E    T+  IS   ++F L+ F  ++FP+
Sbjct: 61  IDEDGECVVPERLLYDIVKSFPDAAITMEVDE----TQALISCDKTSFTLKVFDPADFPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +      ++       V+R     + ++ R  L G+      + ++L  VATD +R
Sbjct: 117 FPDIDVNTKASISFKAFSQAVKRVAKVASKDQGRPALTGVLITTIPDGMRL--VATDSYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ ++          +++    +  + +  L  K+ S+++ LS + +     S+    R
Sbjct: 175 LAMDDIPCENPTEGFEALV--SGSFMQEVASLPEKEESIEICLSSNHVVFTYGSIVFINR 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC--MT 298
            I+  FPNYQ ++  S           +  AV RV +MSS+    +K  + S      ++
Sbjct: 233 RIEARFPNYQQLLTDSYTTRTEFETAGILAAVRRVGLMSSL-SAPIKFDIESSTATALLS 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + DMG A ES++       ++I  N++Y+++ + +I +D+V          +S     
Sbjct: 292 TVSQDMGSAEESLSCDVEGENIEIALNHQYVVDGLSSIPTDKVF-----LETRTSMMPGI 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            R +D +            Y+LMP+RI
Sbjct: 347 FRAQDPE---------RFLYLLMPVRI 364


>gi|329116060|ref|ZP_08244777.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD
           2020]
 gi|326906465|gb|EGE53379.1| DNA polymerase III, beta subunit [Streptococcus parauberis NCFD
           2020]
          Length = 378

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 180/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ RS  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S 
Sbjct: 3   QFSINRSLFIQALNATKRAISSKNAIPILSTIKIEVNQENITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLISSTGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASLQESRPILTGVHITLSNNKD-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +  + A    +++P K++ E   +      +V++  S S+I    E 
Sbjct: 179 ATDSHRMSQRLLSLE-KSANNFDVVIPSKSLREFSSVFGDDIETVEIFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMNQFETEVVFNTQSLRHAMERAHLISNATQNGTVKLEIAAN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++   V++P++GK  E ++ V  +   + I FN  YL+E +  + S     D V  R  S
Sbjct: 298 EVTAHVNSPEVGKVNEELDTVEKSGNDLTISFNPTYLIESLKALKS-----DTVRIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D        N+     ++ P+R
Sbjct: 353 PVRPFTLTPDD--------NQEGFIQLITPVR 376


>gi|306834601|ref|ZP_07467713.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis
           ATCC 700338]
 gi|304423237|gb|EFM26391.1| DNA-directed DNA polymerase III beta subunit [Streptococcus bovis
           ATCC 700338]
          Length = 378

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ +S  L+ L    R I  KN IPV   + ++  +  + +  S  +I I   IP S 
Sbjct: 3   KFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A+   +IV  L D   ++   E     ++ ++ G S   L+   
Sbjct: 63  ENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIEHHQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E        L + +LK+++  T FA + +E R  L G+   ++ +     AV
Sbjct: 120 VDLYPRLQEMATENPLVLETKLLKSIIAETAFAASLQESRPILTGVHMVLS-DHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        ++++P K++ E   + +    +V+V  S+S++    + 
Sbjct: 179 ATDSHRMSQRKLTLENTSND-FNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S+  +   VKL ++++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEIANN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ +  +   + I FN  YL+E +  + S     + VV R  S
Sbjct: 298 SVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKS-----ETVVIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLMPGDD--------AENFIQLITPVR 376


>gi|261415732|ref|YP_003249415.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|261372188|gb|ACX74933.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
 gi|302326015|gb|ADL25216.1| DNA polymerase III, beta subunit [Fibrobacter succinogenes subsp.
           succinogenes S85]
          Length = 373

 Score =  275 bits (704), Expect = 7e-72,   Method: Composition-based stats.
 Identities = 98/384 (25%), Positives = 188/384 (48%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++++ + + L  A   +  K+TI +  +  L+     LE+ A+  ++ I   +   
Sbjct: 1   MKFTIQKNVLQDALQAAISAVPNKSTIQILNNFSLRLEGNFLEVSATDLDLGIRVKVEVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G++ ++A  L+D V+ L D +  +   + +               +  F  ++FP 
Sbjct: 61  GERDGAVVINARKLFDQVKSLVDPSITNITFDAQDYLVKIQWSERGKASIIGFDANDFPP 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E   +  +A+S L  L E+T FA +T+  R  LNG+F     +D K+  VATDGHR
Sbjct: 121 FPEIENGETLNIAASELAFLAEKTLFATSTDSTRLSLNGVFLE--AKDGKISMVATDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L  A +D          +I+P KA+  IL  ++  DS+V+V  S + I  N  S+ +  +
Sbjct: 179 LGRAAID-QEGAELSNGVIIPHKALQHILH-MAKGDSTVEVRTSATHILFNTGSIQVISK 236

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L +G +P+Y++VIP   ++  + N T  +  +  V  M++ R + ++L    + L ++  
Sbjct: 237 LYEGPYPSYRSVIPQQFERTAQANTTEFQNKIRSVISMANARTRKIRLQFDGNILELSAT 296

Query: 301 NPDM-GKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +PD+ G + E++ + +N      I FN ++L EI+    S     +EV+ ++++   +  
Sbjct: 297 DPDVGGDSREALAITHNGEGSFCIGFNGQFLAEILGMCKS-----EEVIMKMNNPLGACI 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMP 382
           I    +         +N  ++LMP
Sbjct: 352 IEPVGE--------NMNFSFLLMP 367


>gi|313887623|ref|ZP_07821305.1| DNA polymerase III, beta subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
 gi|312846232|gb|EFR33611.1| DNA polymerase III, beta subunit [Peptoniphilus harei
           ACS-146-V-Sch2b]
          Length = 364

 Score =  275 bits (704), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 189/386 (48%), Gaps = 25/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V R ++ + +    + I ++ T+ +   + + A +  L + A+  EI I   + A 
Sbjct: 1   MLIKVNRKELTKHISIVQKAISQRTTMQILEGIKISAKNNSLTLTATDTEISIKTELNAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I +++ L  DI+RKL++         N     +N+  GDS F L +    E+P 
Sbjct: 61  VEREGDIVINSRLFGDIIRKLENDI----ININVENYMMNLKCGDSIFNLSTQKADEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S ++++  LKN+V++T FA++ +E R    G+   I +    +  VA DG R
Sbjct: 117 LPKVEENISIDISAKDLKNIVKKTTFAVSNDESRIVFTGVLMDIKKS--YINFVALDGFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+  ++    I    SII+P +++ E+++I+   +  +K+++S + I     +      
Sbjct: 175 MAIQRLEKETGIEN--SIIIPSRSLNELVKIIDD-EEDLKLNISRNNIVFKFNNTVFYST 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L+ G+F +Y  ++   +     V+    + AV+R S+++   R   +KL++  + + +  
Sbjct: 232 LLSGDFFSYSALLRDEHKISTSVSKREFQLAVERASLLAREDRANLIKLNVKENYIDIKS 291

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E +    ++  +DI FN +Y+L+ +  + S     +E+V     S + + I
Sbjct: 292 -NSEIGDVFEKVKTSEHDESLDIAFNSRYILDGVKILES-----EEIVLNFTDSVNPLII 345

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + DS           Y+++P+R+
Sbjct: 346 TEAENDS---------YIYLVLPVRL 362


>gi|81251097|gb|ABB69894.1| DNA polymerase III beta chain [Nitrosomonas sp. CNS332]
          Length = 373

 Score =  275 bits (703), Expect = 9e-72,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 200/392 (51%), Gaps = 28/392 (7%)

Query: 1   MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T+  R  + + L     I+ER++T+P+  +VL+   DG L +  +  EIE+      
Sbjct: 1   MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60

Query: 60  -SVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             ++  GS+  TVS   L DI+R L  G+ +   +       + I  G S F LQ  P  
Sbjct: 61  PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSE---NRLQIVSGKSRFSLQLLPAE 117

Query: 117 EFPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +FP   ++      SF L   +LK  ++R   AMA +++RYYLNG    I  ED KL  V
Sbjct: 118 DFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLMLV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRLA+   D+  Q  K  + I+PRK V E++R L   D  V V +   +I  +   
Sbjct: 176 ATDTHRLAITSFDLDGQFEKSET-IIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSD 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292
             +  ++I G+F +++  IP ++  +  +N  +   A+ R +I+SS     ++V L++++
Sbjct: 235 AVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRSVHLNITN 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            KL ++  N +  +A E + + Y+   +D  FN  YL+E+++N+ S     + +    +S
Sbjct: 295 GKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSFES 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S++ I   D D  N         +VLMPMR
Sbjct: 350 MQSAILITLPDDDQFN---------HVLMPMR 372


>gi|24378534|ref|NP_720489.1| DNA polymerase III subunit beta [Streptococcus mutans UA159]
 gi|24376382|gb|AAN57795.1|AE014853_2 putative DNA polymerase III, beta subunit [Streptococcus mutans
           UA159]
          Length = 378

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 179/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ +   L+ L    R I  KN IP+   + ++ N   + +  S  +I I   I A  
Sbjct: 3   KFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAEE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   G+I + A+   +IV  L D   I+   E     +V ++ G S   L+   
Sbjct: 63  ENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIEQHQVVLNSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+   +     +  AV
Sbjct: 120 VEQYPRLQEVGTNNPLILETKLLKTIISETAFAASTQESRPILTGVHLVLT-NHKEFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    +    +++P +++ E   + +    SV+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRKLTLD-HSSDDFDVVIPSRSLREFAAVFTDDIESVEVFFSNSQILFRSEY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S+  +   VKL + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEIINN 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++   V++P++GK  E +++   +   + I FN  YL+E +  + S     + V  R  S
Sbjct: 298 QVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKS-----ETVTIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +           DN  N   ++ P+R
Sbjct: 353 PIRPFTLTP--------SDNSENFIQLITPVR 376


>gi|114565578|ref|YP_752732.1| DNA-directed DNA polymerase [Syntrophomonas wolfei subsp. wolfei
           str. Goettingen]
 gi|114336513|gb|ABI67361.1| DNA polymerase III, beta subunit [Syntrophomonas wolfei subsp.
           wolfei str. Goettingen]
          Length = 409

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 103/392 (26%), Positives = 186/392 (47%), Gaps = 23/392 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITG-AIP 58
           MK  +E+ D+L +     R    KN IPV   +LL+++ D  L + A+  EI I      
Sbjct: 30  MKFMIEKKDLLAITSMVYRAASSKNAIPVLSGLLLESDPDTGLTMTATDMEIGIRASTAK 89

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V   GS+ V+AH  +D ++ L +     F + N+   +++I +G S+ ++ ++ + E+
Sbjct: 90  IEVIEKGSVLVNAHYFFDFIKLLPEVPI--FIELNQETAQLDIKYGRSSGFINTYRDYEY 147

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+   ++    F +   VLK  +++T FA AT   R    G+ F +  E   L  VA+D 
Sbjct: 148 PALPLKKIKPCFTIKQEVLKEALKKTVFAAATTHFRQVFTGVLFDL-GEGGNLNVVASDT 206

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA     I     +  S I+P +   EILR+L      + + LS + +     +  + 
Sbjct: 207 HRLARYSCTIKLDAPEPLSFIIPTRTANEILRLLDDSPEEINIGLSNNNVSFYRNNFLLL 266

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKL 295
            RLI+G++PNY+ VIP S   +++++   L   ++R  ++ S    +IQ  +     +++
Sbjct: 267 SRLIEGQYPNYEQVIPRSFSYKVKLDTQVLADTLERARVIPSDDKLKIQYTRFKFEENEV 326

Query: 296 CMTVDNPDMGKAIESMNVY--YNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   +  MG+  E + +         ++I FN  Y L+++  +  +     E++  L S
Sbjct: 327 EVNSYSEIMGEITEVIEIKDPVEGEGELNISFNTNYFLDVVKILEGE---AKELLINLSS 383

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               V I    KD         N  YVL+P+R
Sbjct: 384 ILGPVMIVNPQKD---------NYLYVLVPLR 406


>gi|282879819|ref|ZP_06288548.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1]
 gi|281306329|gb|EFA98360.1| DNA polymerase III, beta subunit [Prevotella timonensis CRIS 5C-B1]
          Length = 374

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  S +   L    ++I  KN++P+    L    +  L+I AS  E  +  ++   
Sbjct: 1   MRFTLSSSALNNRLQTLSKVINLKNSLPILDCFLFDVANNELKITASDSENVMQTSVSLD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   V    + D V++L +           L  ++   +G  NF  Q    +E+P
Sbjct: 61  ECDGNGKFAVPNRTILDAVKELPEQPLTFDVDTEHLTIKILYQNGVYNFTAQ--NAAEYP 118

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T E     +   + + VL N + R+ FA A +E+R  +NGI+F +  E   L  VA+DG
Sbjct: 119 QTSEIPDGATVVTIGADVLNNNINRSLFATAQDELRPVMNGIYFDLTPEG--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     S I+P+K    +  +L+  +  V +        +  E  S+S
Sbjct: 177 HKL-VRNKNFEIKSDTPASFILPKKPATLLRTVLTKGEGDVVIKFDNRNAEIRYEGGSLS 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G++PNY +VIP  N  +L V+   L  A+ RV   +S   Q ++L L + KL ++
Sbjct: 236 CRLIEGKYPNYNSVIPQDNPNQLNVDRKGLLGALRRVLPFASESSQLIRLHLETGKLELS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E +   Y    M I F    L +I+ N+ S     DEV  +L   + + 
Sbjct: 296 SEDVDFATSAKEQIVCDYTGQTMSIGFKGSSLTDILTNLDS-----DEVTIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I        + +        ++MPM
Sbjct: 351 LIIP------STQPEHQEVLMLIMPM 370


>gi|170288484|ref|YP_001738722.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2]
 gi|170175987|gb|ACB09039.1| DNA polymerase III, beta subunit [Thermotoga sp. RQ2]
          Length = 366

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A 
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D       +    G  + IS G + F + + P  EFP
Sbjct: 61  EISGEARFVVPGDVIQKMVKVLPDEITELSLE----GDALVISSGSTVFRITTMPADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+DG 
Sbjct: 117 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           RLA+AE     +  +  S ++  K++ E+  +L +     + V     R+ L+   +   
Sbjct: 175 RLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + + 
Sbjct: 233 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G+ ++ + V      + I FN K++ +++ +I +     +E+      S S   
Sbjct: 293 SKSPDYGEVVDEIEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D              Y++MP+R+
Sbjct: 348 INPLD---------ISGYLYIVMPIRL 365


>gi|288904225|ref|YP_003429446.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus
           UCN34]
 gi|306832485|ref|ZP_07465637.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325977202|ref|YP_004286918.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
 gi|288730950|emb|CBI12494.1| DNA polymerase III (beta subunit) [Streptococcus gallolyticus
           UCN34]
 gi|304425385|gb|EFM28505.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           gallolyticus subsp. gallolyticus TX20005]
 gi|325177130|emb|CBZ47174.1| DNA polymerase III subunit beta [Streptococcus gallolyticus subsp.
           gallolyticus ATCC BAA-2069]
          Length = 378

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ +S  L+ L    R I  KN IPV   + ++  +  + +  S  +I I   IP S 
Sbjct: 3   KFSINKSFFLQALNATKRAISTKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A+   +IV  L D   ++   E     ++ ++ G S   L+   
Sbjct: 63  ENAGLLITSTGAVLLEANFFINIVSSLPD---VTLDFEEIEHHQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E        L + +LK+++  T FA + +E R  L G+   ++ +     AV
Sbjct: 120 VDLYPRLQEMATENPLVLETKLLKSIIAETAFAASIQESRPILTGVHMVLS-DHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        ++++P K++ E   + +    +V+V  S+S++    + 
Sbjct: 179 ATDSHRMSQRKLTLENTSND-FNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S+  +   VKL ++++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNAFETEVTFNTNALRSAMERAHLISNATQNGTVKLEIANN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ +  +   + I FN  YL+E +  + S     + VV R  S
Sbjct: 298 SVSAHVNSPEVGKVNEELDTIDQSGNDLTISFNPTYLIEALKALKS-----ETVVIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLMPGDD--------AENFIQLITPVR 376


>gi|114330038|ref|YP_746260.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91]
 gi|114307052|gb|ABI58295.1| DNA polymerase III, beta subunit [Nitrosomonas eutropha C91]
          Length = 373

 Score =  275 bits (703), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 119/392 (30%), Positives = 199/392 (50%), Gaps = 28/392 (7%)

Query: 1   MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T+  R  + + L     I+ER++T+P+  +VL+   DG L +  +  EIE+      
Sbjct: 1   MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60

Query: 60  -SVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             ++  GS+  TVS   L DI+R L  G+ +   +       + I  G S F LQ  P  
Sbjct: 61  PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSE---NRLQIVSGKSRFSLQLLPAE 117

Query: 117 EFPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +FP   ++      SF L   +LK  ++R   AMA +++RYYLNG    I  ED KL  V
Sbjct: 118 DFPRMAKDNERCDASFTLTQQILKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLMLV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRLA+   D+  Q  K  + I+PRK V E++R L   D  V V +   +I  +   
Sbjct: 176 ATDTHRLAITSFDLDGQFEKSET-IIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSD 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292
             +  ++I G+F +++  IP ++  +  +N  +   A+ R +I+SS     + V L++++
Sbjct: 235 AVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITN 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            KL ++  N +  +A E + + Y+   +D  FN  YL+E+++N+ S     + +    ++
Sbjct: 295 GKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSFEN 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S++ I   D D  N         +VLMPMR
Sbjct: 350 MQSAILITLPDDDQFN---------HVLMPMR 372


>gi|15643032|ref|NP_228075.1| DNA polymerase III, beta subunit [Thermotoga maritima MSB8]
 gi|4980758|gb|AAD35350.1|AE001708_18 DNA polymerase III, beta subunit [Thermotoga maritima MSB8]
          Length = 366

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A 
Sbjct: 1   MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D       +    G  + IS G + F + + P  EFP
Sbjct: 61  EISGEARFVVPGDVIQKMVKVLPDEITELSLE----GDALVISSGSTVFRITTMPADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+DG 
Sbjct: 117 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           RLA+AE     +  +  S ++  K++ E+  +L +     + V     R+ L+   +   
Sbjct: 175 RLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + + 
Sbjct: 233 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G+ ++ + V      + I FN K++ +++ +I +     +E+      S S   
Sbjct: 293 SKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D              Y++MP+R+
Sbjct: 348 INPLD---------ISGYLYIVMPIRL 365


>gi|298253030|ref|ZP_06976822.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis 5-1]
 gi|297532425|gb|EFH71311.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis 5-1]
          Length = 374

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + ++A +G L++ A   +I     I A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI +   L+ DI + L         + N     + I+ G S F LQ  P  E+P 
Sbjct: 61  VDEEGSILILGKLMADITKSLPAEKTYLKSENNT----LTITSGKSTFTLQLMPLGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +  +       +      V +   + + EE R  L GI     ++ + +   +TD  R
Sbjct: 117 LPKLPHKLGQV-DAPTFIQAVNQASVSTSREENRPVLTGIRIQFEDDSVTM--TSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237
           L+ +      +   + S  + R ++   +        +V +  +E   S +       + 
Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTRGSLLRDIAHSLDDHQNVIIHFNEEDKSLLGFENSGRTS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDGEFP+   +          +N   L  A+ RVS+++  R   +++  S+ +L +
Sbjct: 234 TSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVA-ERNAPIRMIFSNQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YLLE +  I      +  V  ++ ++   V
Sbjct: 293 SAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMKMATAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +   ++ D   +  Y+L+PMR
Sbjct: 348 EFNGQQE---SDGDESTDYRYLLVPMR 371


>gi|116750114|ref|YP_846801.1| DNA polymerase III subunit beta [Syntrophobacter fumaroxidans MPOB]
 gi|116699178|gb|ABK18366.1| DNA polymerase III, beta subunit [Syntrophobacter fumaroxidans
           MPOB]
          Length = 369

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 191/386 (49%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59
           MK+ +E+ +++++L     I ++K+++PV  +VL+ +++   +E  A+  E+ +      
Sbjct: 1   MKVRLEKGNLIQILQKVQNITDKKSSMPVLSNVLISSSEQQTVEFSATDLELSLWTQTGG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  GS TVSA  L++IVR+L     +    E     ++ I  G + F L + P  +FP
Sbjct: 61  QVETPGSSTVSARKLFEIVRELPQPEVLL---EGLPNNKMQILSGRARFELSTIPGEDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                      ++ ++ LK  + +T  ++  +E  + + G F H   ED     V++DGH
Sbjct: 118 QLNFYRETELVKVDAAALKRALTKTLHSVPADEDSFSIAGTFLHAVNED-SYRFVSSDGH 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  EV   A   +     +I+PRK V EILR+L  K+  V + + E  + L   S  +
Sbjct: 177 RLSYCEVPKEAFGTLDIREGLIIPRKGVQEILRMLE-KEEEVVLGVHEKYVVLRTPSTFL 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           SV+L+D EFP Y+ +IP      + ++      A+ R SI+S+   + V+  L+   L +
Sbjct: 236 SVQLLDAEFPEYKTIIPEERPFFIMLDLEQFFSALKRSSILSNNVWRHVRFILTKGVLEL 295

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              NP++G A E+++V Y      + FN +YLLE I  + S  V  + V    D  +  V
Sbjct: 296 EAGNPELGNANETLDVEYEGEDFSVAFNIRYLLETIQALDSPRVRFEWV----DQFHGGV 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
           F+  +D               ++MPM
Sbjct: 352 FVGSED----------PGFLSLVMPM 367


>gi|237756531|ref|ZP_04585058.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
 gi|237691305|gb|EEP60386.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium
           yellowstonense SS-5]
          Length = 362

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + D+ E       I E+K  +P+  + LL+A DG L +  +  E+  +  IPA 
Sbjct: 1   MKLKAYKKDLQEAFKKV--ISEKKAALPILTNFLLKAEDGKLTVYGTDLEVYTSYTIPAD 58

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ V++  + DI + L     + +      G  + I+ G + + L +F   +FP 
Sbjct: 59  VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +      +  ++   L   + +T +A++ +E R+ LNG+ F   +   KL  VATDGHR
Sbjct: 115 PESYPSDLAILISGQELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +  +    IVP+KA+ EI +++S  +  V+V++S S I     +  +S R
Sbjct: 173 LALYSTEITGKGLE-GKYIVPQKALNEIKKLVSDVE-DVEVAVSGSSIFFKGSNYILSAR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FPNY  VIP S + E+ ++ + L  ++ RV I      + +KL L  +KL ++  
Sbjct: 231 LLEGVFPNYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENDNKPIKLKLFDNKLIISTP 290

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
                 A + + V Y+    +I FN KY+L+ +     DE+ D  +V +  + +S   I 
Sbjct: 291 PTSDAYAEDEIEVNYDGEEFEIGFNGKYILDAV-----DEIEDKNIVVKFINKDSQTVII 345

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++ + +           V+MPM I
Sbjct: 346 PENPEER--------YLAVVMPMTI 362


>gi|290579528|ref|YP_003483920.1| putative DNA polymerase III subunit beta [Streptococcus mutans
           NN2025]
 gi|254996427|dbj|BAH87028.1| putative DNA polymerase III beta subunit [Streptococcus mutans
           NN2025]
          Length = 378

 Score =  274 bits (702), Expect = 1e-71,   Method: Composition-based stats.
 Identities = 93/392 (23%), Positives = 180/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ +   L+ L    R I  KN IP+   + ++ N   + +  S  +I I   I A  
Sbjct: 3   KFSINKVFFLQALNATKRAISSKNAIPILSSLKIEVNSQSITLTGSNGQISIENTISAEE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   G+I + A+   +IV  L D   I+   E     +V ++ G S   L+   
Sbjct: 63  ENAGLLVTSSGAILLEANFFINIVSSLPD---ITLDFEEIEQHQVVLNSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L +++LK ++  T FA +T+E R  L G+   +     +  AV
Sbjct: 120 VEQYPRLQEVGTNNPLILETNLLKTIISETAFAASTQESRPILTGVHLVLT-NHKEFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    +    +++P +++ E   + +    SV+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRKLTLD-HSSDDFDVVIPSRSLREFATVFTDDIESVEVFFSNSQILFRSEY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  + + E+  N   LR A++R  ++S+  +   VKL + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLGNNFETEVVFNTNALRYAMERAHLISNATQNGTVKLEIINN 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++   V++P++GK  E +++   +   + I FN  YL+E +  + S     + V  R  S
Sbjct: 298 QVTAHVNSPEVGKVNEELDIESLSGNDLTISFNPTYLIEALKALKS-----ETVTIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +           DN  N   ++ P+R
Sbjct: 353 PIRPFTLTP--------SDNSENFIQLITPVR 376


>gi|188996889|ref|YP_001931140.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1]
 gi|188931956|gb|ACD66586.1| DNA polymerase III, beta subunit [Sulfurihydrogenibium sp. YO3AOP1]
          Length = 362

 Score =  274 bits (702), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 193/385 (50%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   + D+ E       I E+K  +P+  + LL+A DG L +  +  E+  +  IPA 
Sbjct: 1   MKLKAYKKDLQEAFKKV--ISEKKTALPILTNFLLKAEDGKLTVYGTDLEVYTSYWIPAD 58

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ V++  + DI + L     + +      G  + I+ G + + L +F   +FP 
Sbjct: 59  VEEEGSLCVNSKKISDISKVLAQNEALLYTD----GETLKITSGKTKYSLPTFEADDFPL 114

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +      +  ++   L   + +T +A++ +E R+ LNG+ F   +   KL  VATDGHR
Sbjct: 115 PEAFPSDLAVSISGKELLKGISKTIYAVSKDESRFALNGVCFSFIKG--KLDFVATDGHR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+   +I  +  +    IVP+KA+ EI +++S  +  V+V++S S I     +  +S R
Sbjct: 173 LALYSTEITGKGLE-GKYIVPQKALNEIKKLVSDVE-DVEVAVSGSSIFFKGSNYVLSAR 230

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++G FP+Y  VIP S + E+ ++ + L  ++ RV I      + +KL L  +KL ++  
Sbjct: 231 LLEGVFPDYTQVIPNSFNIEIVLSKSELIDSIKRVIIAEENENKPIKLKLLDNKLIISTP 290

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
                 A + + V Y+    +I FN KY+LE +     DE+ D  +V +  + +S   I 
Sbjct: 291 PTSDTYAEDEIEVNYDGEEFEIGFNGKYILEAV-----DEIEDKNIVAKFINKDSQTVII 345

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++ + +           V+MPM I
Sbjct: 346 PENPEER--------YLAVVMPMTI 362


>gi|56966599|pdb|1VPK|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Subunit
           (Tm0262) From Thermotoga Maritima At 2.00 A Resolution
          Length = 378

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+TV   ++ + +  A + + +K+  P+    L +  DG   I A+  E  +   + A 
Sbjct: 13  MKVTVTTLELKDKITIASKALAKKSVKPILAGFLFEVKDGNFYICATDLETGVKATVNAA 72

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D       +    G  + IS G + F + + P  EFP
Sbjct: 73  EISGEARFVVPGDVIQKMVKVLPDEITELSLE----GDALVISSGSTVFRITTMPADEFP 128

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   +FE+ +S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+DG 
Sbjct: 129 EITPAESGITFEVDTSLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 186

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           RLA+AE     +  +  S ++  K++ E+  +L +     + V     R+ L+   +   
Sbjct: 187 RLALAEE--QIENEEEASFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLSTNDVETV 244

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R++D EFP+Y+ VIP +   ++ V+   LR+++ RV +++S   ++VK  +  + + + 
Sbjct: 245 MRVVDAEFPDYKRVIPETFKTKVVVSRKELRESLKRVMVIASKGSESVKFEIEENVMRLV 304

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G+ ++ + V      + I FN K++ +++ +I +     +E+      S S   
Sbjct: 305 SKSPDYGEVVDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 359

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D              Y++MP+R+
Sbjct: 360 INPLD---------ISGYLYIVMPIRL 377


>gi|319945981|ref|ZP_08020230.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           australis ATCC 700641]
 gi|319747789|gb|EFW00034.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           australis ATCC 700641]
          Length = 378

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I    
Sbjct: 3   NFSINKAYFLQALNTTKRAISSKNAIPILSTIKIDVTSEGITLIGSNGQISIEYFISVKD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   G+I + A    ++V  L D   +   KE E   ++ +  G S   L+   
Sbjct: 63  ENAGLLVTTPGAILLEATFFINVVSSLPD--VVLDVKEIEQK-QIVLVSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L    LK ++  T FA +T+E R  L G+ F ++ +  +L  V
Sbjct: 120 AEQYPRIQEISASNPLTLPIQTLKKIISETAFAASTQESRPILTGVHFVLS-DHKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +++P +++ E+  + S +   V+V  + ++I    ++
Sbjct: 179 ATDSHRMSQKNITLEKN-GDNFDVVIPSRSLRELTSVFSDEIEQVEVFFANNQILFRSDN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP     E+     +LRQA++R  ++S+  +   VKL ++S 
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSSEVTFKVAHLRQAMERARLLSNATQNGTVKLEIASG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++    +   ++I FN  YL++ +  I S++     VV R  S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDTEAVSGDDLNISFNPTYLIDALKAIESEK-----VVIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   ++              ++ P+R
Sbjct: 353 AVRPFTLVPAEE--------SERFIQLITPVR 376


>gi|320547712|ref|ZP_08041997.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus
           ATCC 9812]
 gi|320447787|gb|EFW88545.1| DNA-directed DNA polymerase III beta subunit [Streptococcus equinus
           ATCC 9812]
          Length = 378

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 181/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ +S  L+ L    R I  KN +P+   + ++  +  + +  S  +I I   IP + 
Sbjct: 3   KFSINKSFFLQALNATKRAISTKNALPILSTIKIEVQNNNITLTGSNGQISIENTIPTTN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A+   +IV  L D   ++   E     ++ +  G S   L+   
Sbjct: 63  ENAGLLITSPGAVLLEANFFINIVSSLPD---VTLDFEEIESHQIVLISGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E        + + +LK+++  T FA + +E R  L G+   +++      AV
Sbjct: 120 VDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKD-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        +++VP K++ E   + +    +V+V  S+S++    + 
Sbjct: 179 ATDSHRMSQRKLTLENTSND-FNVVVPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+  N   LR A++R  ++S+  +   VKL ++++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNSFETEVTFNTNALRSAMERAHLISNATQNGTVKLEITNN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ +  +   + I FN  YL+E +  + S     + V+ R  S
Sbjct: 298 SVSAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKS-----ETVIIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLVPGDD--------AENLIQLITPVR 376


>gi|323345728|ref|ZP_08085951.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis
           ATCC 33269]
 gi|323093842|gb|EFZ36420.1| DNA-directed DNA polymerase III beta subunit [Prevotella oralis
           ATCC 33269]
          Length = 374

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 172/386 (44%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  S +   L    R+I  KN++P+    L +   G L I AS  E  +  ++   
Sbjct: 1   MRFTLSSSALNGHLQTLARVINSKNSLPILDCFLFEVAGGKLNITASDSENVMRSSVQLD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  +    + D V++L +         + L  +V   +G  +F  Q     E+P
Sbjct: 61  ESDTEGSFAIPNRTILDAVKELPEQPLTFDVDTSNLTIKVLYQNGMYSFTAQ--HADEYP 118

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+      +   + S+VL + + R+ FA A +E+R  +NGI+F +  +   L  VA+DG
Sbjct: 119 RTQPMPDGATVVTIDSAVLNDNISRSLFATAQDELRPVMNGIYFDLTADS--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     + I+P+K    +  ILS     V +   E    +      +S
Sbjct: 177 HKL-VRNKNFTIKSDTPAAFILPKKPATLLKNILSKDGGDVVIKFDERNAEIQYAGGILS 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N   L ++   L  A+ RV   +S   Q V+  L + KL +T
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPNLLTIDRRTLLGALRRVLPFASESSQLVRFHLEAGKLELT 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E++   Y    M I F    L EI+ N+ S     DEV  +L   + + 
Sbjct: 296 SEDVDFATSAKENITCDYTGQTMSIGFKGSSLSEILTNLDS-----DEVTIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 IIVP------TTQPENEDVLMLIMPM 370


>gi|291543410|emb|CBL16519.1| DNA polymerase III, beta subunit [Ruminococcus sp. 18P13]
          Length = 368

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 176/385 (45%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + ++ DI   +G+  + +  K+TI     + ++ +  +LE+     E+ I   I A 
Sbjct: 1   MKFSCKKEDICAAIGNVSKAVSVKSTITALEGIRIKLSYTVLELTGYDLELGIRSTIEAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            + CG   V+A L  +I RK+ D  +I  F+ +E+   + I+   + + + +    E+P 
Sbjct: 61  SEDCGEFVVNARLFSEITRKMSD--EILTFETDEMLN-IRITGAVTEYCISAMSAEEYPD 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    + F +    LK+++ +T  A++  E +  + G  F I E+      V +DG+R
Sbjct: 118 LPEVSDEHRFLVPQDQLKSMINQTAHAVSLNENKPVMTGALFDITEDGN-FNMVTSDGYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+    I    A++   +VP + + E+ R+L     +   +  +   I   +  +++  
Sbjct: 177 LALRTEHI--DTAEVHRFVVPARTLSEVSRLLKEDAKAPCGIYNNFKHIVFELGEITVFS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           RL++G+F NY+  IP     E+ V    L   ++R +++ + + +  V+    +  + ++
Sbjct: 235 RLLEGDFHNYRASIPPDKRTEVIVRTRELVNCLERCALLINEKNKAPVRCVFENGTVKVS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +G   +++ V  +   + I FN K++L+ +     D+     +   L   N  V 
Sbjct: 295 CKTG-IGSISDTIPVDLSGDAVTIGFNNKFMLDALRASECDK-----LRIHLSGGNRVVK 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I   + DS           +++MP+
Sbjct: 349 IIPPEGDS---------FVFLVMPV 364


>gi|323350830|ref|ZP_08086489.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis VMC66]
 gi|322123004|gb|EFX94707.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis VMC66]
 gi|324989579|gb|EGC21525.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK353]
 gi|325686478|gb|EGD28507.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK72]
          Length = 378

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      L +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGLTLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNQF-LKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|312866786|ref|ZP_07726999.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis
           F0405]
 gi|311097569|gb|EFQ55800.1| DNA polymerase III, beta subunit [Streptococcus parasanguinis
           F0405]
          Length = 378

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 172/392 (43%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I    
Sbjct: 3   NFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIKD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D        E +   +V ++ G S   L+   
Sbjct: 63  ENAGLLVTSPGSILLEATFFINVVSSLPDVTLDFKEIEQK---QVLLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK L+  T FA + +E R  L G+ F +++   +L  V
Sbjct: 120 ADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +++P +++ E   + S    +V+V  + ++I    E 
Sbjct: 179 ATDSHRMSQKVITLDKN-GDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   + E   N  NLR A++R  ++S+  +   VKL   + 
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFKNG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++G+  E ++    +   + I FN  YL+E +  I S     ++VV R  S
Sbjct: 298 VVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDS-----EQVVIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +  ++ +             ++ P+R
Sbjct: 353 SVRPFTLVPEENEQ--------GFIQLITPVR 376


>gi|322390525|ref|ZP_08064043.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 903]
 gi|321142799|gb|EFX38259.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 903]
          Length = 380

 Score =  274 bits (701), Expect = 2e-71,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 171/392 (43%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I    
Sbjct: 5   NFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIKD 64

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D        E +   +V ++ G S   L+   
Sbjct: 65  ENAGLLVTSPGSILLEATFFINVVSSLPDVTLDFKEIEQK---QVLLTSGKSEITLKGKD 121

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK L+  T FA + +E R  L G+ F +++   +L  V
Sbjct: 122 ADQYPRIQEIAASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNK-ELKTV 180

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +++P +++ E   + S    +V+V  + ++I    E 
Sbjct: 181 ATDSHRMSQKVITLEKN-GDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRSEH 239

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   + E   N  NLR A++R  ++S+  +   VKL   + 
Sbjct: 240 ISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFKNG 299

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++G+  E ++    +   + I FN  YL+E +  I S     ++VV R  S
Sbjct: 300 VVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDS-----EQVVIRFIS 354

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +  +  +             ++ P+R
Sbjct: 355 SVRPFTLVPEGNEQ--------GFIQLITPVR 378


>gi|81251101|gb|ABB69897.1| DNA polymerase III beta chain [Nitrosomonas sp. IWT310]
          Length = 373

 Score =  274 bits (700), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 120/392 (30%), Positives = 198/392 (50%), Gaps = 28/392 (7%)

Query: 1   MKITVE-RSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T+  R  + + L     I+ER++T+P+  +VL+   DG L +  +  EIE+      
Sbjct: 1   MKLTISDRDLLFKPLQTVSGIVERRHTLPILLNVLISIRDGKLALVTTDLEIEVEATSNI 60

Query: 60  -SVDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             ++  GS+  TVS   L DI+R L  G+ +   +       + I  G S F LQ  P  
Sbjct: 61  PELENQGSLQMTVSVRKLQDILRALPSGSPVELIRSE---NRLQIVSGKSRFSLQLLPAE 117

Query: 117 EFPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +FP    +      SF L   +LK  ++R   AMA +++RYYLNG    I  ED KL  V
Sbjct: 118 DFPRMVRDNERCDTSFTLTQQMLKKHLQRVSHAMAQQDLRYYLNGTLLLI--EDNKLMLV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRLA+   D+  Q  K  + I+PRK V E++R L   D  V V +   +I  +   
Sbjct: 176 ATDTHRLAITSFDLDGQFEKSET-IIPRKTVLELIRQLEDSDKPVIVEIYSKKICFHFSD 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLSS 292
             +  ++I G+F +++  IP ++  +  +N  +   A+ R +I+SS     + V L++++
Sbjct: 235 AVLVSKVISGKFIDFRRAIPQTSVFQFDINRLDFLHALQRTAIISSSNDLFRNVHLNITN 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            KL ++  N +  +A E + + Y+   +D  FN  YL+E+++N+ S     + +    +S
Sbjct: 295 GKLNISAKNKEQEEAQEEIEIVYSNETIDTSFNIVYLMEVLNNLDS-----EHIRCSFES 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S++ I   D D  N         +VLMPMR
Sbjct: 350 MQSAILITLPDDDQFN---------HVLMPMR 372


>gi|222152203|ref|YP_002561378.1| DNA polymerase III subunit beta [Streptococcus uberis 0140J]
 gi|222113014|emb|CAR40317.1| DNA polymerase III, beta chain [Streptococcus uberis 0140J]
          Length = 378

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ RS  ++ L    R I  KN IPV   + ++ +   + +  S  +I I   IP S 
Sbjct: 3   QFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSSTDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   +I+  L D        E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITDTGSILLEANFFINIISSLPDVTLDFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+L+  T FA +T+E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTDNPLVLETKLLKSLINETAFAASTQESRPILTGVHLTLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +        ++++P +++ E   + +    +V++  S S+I    E+
Sbjct: 179 ATDSHRMSQRLLVLDKASTD-FNVVIPSRSLREFSSVFTDDIETVEIFFSPSQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E   N   LR A++R  ++S+  +   VKL +  +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLINQFETEATFNTQALRHAMERAFLISNATQNGTVKLEIKEN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E + +   +   + I FN  YL+E +  + S     + V  R  S
Sbjct: 298 TISAHVNSPEVGKVNEELEIVEKSGSDLTISFNPTYLIEALKALKS-----ETVRIRFVS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D +             ++ P+R
Sbjct: 353 PVRPFTLTPGDDEE--------GFIQLITPVR 376


>gi|322377904|ref|ZP_08052392.1| DNA polymerase III, beta subunit [Streptococcus sp. M334]
 gi|321281080|gb|EFX58092.1| DNA polymerase III, beta subunit [Streptococcus sp. M334]
          Length = 378

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S     ++V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|332522185|ref|ZP_08398437.1| DNA polymerase III, beta subunit [Streptococcus porcinus str.
           Jelinkova 176]
 gi|332313449|gb|EGJ26434.1| DNA polymerase III, beta subunit [Streptococcus porcinus str.
           Jelinkova 176]
          Length = 377

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 171/392 (43%), Gaps = 28/392 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ RS  ++ L    R I  KN IPV   + ++ +   + +  S  +I I   IP S 
Sbjct: 3   QFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIETIIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D        E+    +V ++ G S   L+   
Sbjct: 63  ENAGLLISSTGAILLEASFFINIISSLPDFTLDFKEIEHH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA +T+E R  L G+   +     +  AV
Sbjct: 120 VEQYPRLQEVSTDNPLVLETKLLKSIISETAFAASTQESRPILTGVHLTLK-NHKEFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +++P K++ E   + +    +V++  S S+I    + 
Sbjct: 179 ATDSHRMSQRLLTLEKSATD-FDVVIPSKSLREFTSVFTDDIETVEIFFSPSQILFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E   N   LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEVTES 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +  V      + I FN  YL+E +         ++ V  R  S
Sbjct: 298 SVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKAFK-----NETVRIRFVS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++             ++ P+R
Sbjct: 353 PVRPFTLTSDDEE---------GFIQLITPVR 375


>gi|171778196|ref|ZP_02919425.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
 gi|171283020|gb|EDT48444.1| hypothetical protein STRINF_00264 [Streptococcus infantarius subsp.
           infantarius ATCC BAA-102]
          Length = 378

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ +S  L+ L    R I  KN IPV   + ++  +  + +  S  +I I   IP S 
Sbjct: 3   KFSINKSFFLQALNATKRAISSKNAIPVLSTIKIEVQNSNITLTGSNGQISIENTIPTSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A+   +IV  L D   ++   E     ++ ++ G S   L+   
Sbjct: 63  ENAGLLITSSGAVLLEANFFINIVSSLPD---VTLDFEEIEHHQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E        + + +LK+++  T FA + +E R  L G+   +++      AV
Sbjct: 120 VDLYPRLQEMATENPLVIETKLLKSIITETAFAASLQESRPILTGVHMVLSDHKD-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        ++++P K++ E   + +    +V+V  S+S++    + 
Sbjct: 179 ATDSHRMSQRKLTLDNTSND-FNVVIPSKSLREFAAVFTDDIETVEVFFSDSQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+  N   LR A++R  ++S+  +   VK+ ++++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNSFETEVTFNTGALRSAMERAHLISNATQNGTVKVEITNN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ +  +   + I FN  YL+E +  + S     + VV R  S
Sbjct: 298 SISAHVNSPEVGKVNEELDIIDQSGSDLTISFNPTYLIEALKALKS-----ETVVIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLMPGDD--------AENFIQLITPVR 376


>gi|302388601|ref|YP_003824422.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM
           16646]
 gi|302199229|gb|ADL06799.1| DNA polymerase III, beta subunit [Thermosediminibacter oceani DSM
           16646]
          Length = 370

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 167/389 (42%), Gaps = 28/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +L  +  A R I  K T+P+   +   A    LE+ ++  E+ I   +PA 
Sbjct: 1   MQFLIEKDQLLSGVSVAERFIASKTTMPILSGIKFSAYGSTLELSSTDLEMGIECRLPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G   +S  +  DI RKL  G  +   +E     ++ +  GD    +      +FP 
Sbjct: 61  IMEEGDAVISTKVFSDIARKLPQGQVLFRRQEG----QITVEAGDFRLNMPVLEAGDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179
               E     +      KN+V++T FA A +   R  L G        + +   VA DG 
Sbjct: 117 VVPPETNPILKFPKETFKNMVKQTIFARAEDSIARPVLTGELLEAR--NGRFHVVALDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           R+A    +         S++VP +A+ E+ R LS   + + ++    +R+    E+L M+
Sbjct: 175 RIAWRWEEAEVPD---FSVVVPGRALLELTRALSDTGEDTFEIHTGRNRVVFCTENLVMA 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLC 296
            R+++G+F +Y+ V+       +      L  +++R  I++    +   VK  + + ++ 
Sbjct: 232 TRVLEGKFIDYEQVVKVDPKITVVAKTDALLSSIERAFIVAREGSKNNLVKFRIGNGRME 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++ +  +MG   E +    +   + + FN ++ +E + +     V   E+  +       
Sbjct: 292 VSSE-TEMGSVYEKVECETSGDDLVVAFNARFFIEALRS-----VEQPEIELKFAGEVGP 345

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             IR ++ ++  N          ++P+R+
Sbjct: 346 CVIRPRNVENHINF---------ILPVRL 365


>gi|297243221|ref|ZP_06927156.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis AMD]
 gi|296888755|gb|EFH27492.1| PCNA-like DNA polymerase sliding clamp subunit [Gardnerella
           vaginalis AMD]
          Length = 374

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 163/387 (42%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + ++A +G L++ A   +I     I A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDARPANPILAGLKIEAANGTLQLSAFNYQISSCHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI +   L+ DI + L         + N     + I+ G S F LQ  P  E+P 
Sbjct: 61  VDEEGSILILGKLMADITKSLPAEKTYLKSENNT----LTITSGKSTFTLQLMPLGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +          +      V +   + + EE R  L GI     ++   +   +TD  R
Sbjct: 117 LPKLPNKLGQV-DAPTFIQAVNQASVSTSREENRPVLTGIRIQFEDD--TVTMTSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237
           L+ +      +   + S  + R ++   +        +V +  +E   S +       + 
Sbjct: 174 LSRSTFKWTPEHNDIHSTTLTRGSLLRDIAHSLDDHQNVIIHFNEEDKSLLGFENSGRTS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + ++IDGEFP+   +          +N   L  A+ RVS+++  R   +++  S+ +L +
Sbjct: 234 TSQIIDGEFPSVDRLFVDEYPIHAIINKQLLINAIKRVSLVA-ERNAPIRMIFSNQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YLLE +  I      +  V  ++ ++   V
Sbjct: 293 SAGTADESQAKEVLDIDMDGEDITVAFNPNYLLEGLGAIP-----EPFVHMKMATAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +   ++ D   +  Y+L+PMR
Sbjct: 348 EFNGQQE---SDGDESTDYRYLLVPMR 371


>gi|157363350|ref|YP_001470117.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO]
 gi|157313954|gb|ABV33053.1| DNA polymerase III, beta subunit [Thermotoga lettingae TMO]
          Length = 367

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 90/385 (23%), Positives = 177/385 (45%), Gaps = 22/385 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++     +    +    + I  K   P+   +L   +     + A+  E  +   + +  
Sbjct: 3   RLKTNVGEFTSKISIVSKTIPSKTIKPIMACILFDISHDGTFLHATDLETGVKARMESEA 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   V A  +Y+IVR L +  ++     + L   + +  G S F L +    +FP  
Sbjct: 63  DGEGKFAVDAKTVYEIVRTLPNEEEVLLEFSSNL---MTLECGRSKFRLPTMDPGDFPEI 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L +  + +++ER  F  A +E    LNG+F+ I    L+L  VA+DG RL
Sbjct: 120 SLTTEGNTLMLDAKTINDMIERVTFCAAKDEFMRNLNGVFWEIGNGFLRL--VASDGFRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSVR 240
           A++E  + AQ     S ++  K++ E+  I+ S  DS + +     R+ LN + +   +R
Sbjct: 178 ALSEERLNAQSE--SSFLISLKSMKELQSIVESCLDSEITIRYDGKRLSLNTKDIETVMR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           +++ +FP+Y+ V+P +   ++ +    + +A+ R  +++    ++V+L +S D L ++  
Sbjct: 236 VVEIDFPDYRKVLPKAFKSKVVLPRDEISEALKRTMVIAKRGSESVRLEISEDTLILSSR 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           +PD G+  E + +      + I FN  +LLE + ++ +     +EV      S S + I 
Sbjct: 296 SPDYGEVNEEIPIKKEGEDITIAFNPLFLLEAMRHVHT-----EEVELNFVDSTSPLQI- 349

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                   N  N     Y++MP+RI
Sbjct: 350 --------NPLNVEGYLYIIMPIRI 366


>gi|328946932|ref|YP_004364269.1| DNA polymerase III subunit beta [Treponema succinifaciens DSM 2489]
 gi|328447256|gb|AEB12972.1| DNA polymerase III, beta subunit [Treponema succinifaciens DSM
           2489]
          Length = 374

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 102/390 (26%), Positives = 191/390 (48%), Gaps = 24/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T ++  +++ +  A  II  KN   +  ++L+ A +  L IKA+  ++     +P  
Sbjct: 1   MRFTFDKDTMIKEISIAQEIISTKNMGSILSNILIIAQENKLTIKATDIKVNFETQVPVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS------HGDSNFYLQSFP 114
           +   G+ TV       I+  L  G +I F +E +   E +I+           F ++S  
Sbjct: 61  ITEEGTTTVYCDKFMGILNSLPSG-EIEFNQEKKENEEQSINVIIKPVDKKIKFQMKSMS 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + +FP     E V  FE++S  +K ++ +T FA++ +E RY++NG+FF    ++L +  V
Sbjct: 120 QEKFPEFYSAENVPYFEVSSKDIKEMIAQTSFAVSEDETRYFMNGVFFEKKGDNLNM--V 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG RL+     I+A I++ PS IV  K +  IL+    ++ ++ V++ +  I     +
Sbjct: 178 ATDGRRLSFVSKSILAGISEFPSAIVHPKILNIILKHAP-EEGNIFVAVVDKMIFFKFGN 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
                 L++G+FPNY+ VIP       +V   +L  A+ RV++M   +   +  ++S   
Sbjct: 237 YKFGAALLEGQFPNYERVIPEHQAFNFQVYKADLVDALKRVALMVDKKAGRIFFNISDGV 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T    DMG A E +   Y      I  N++Y+ E +  I+S     +++ F      
Sbjct: 297 LKITSSQSDMGSADEEIPCQYQGDSYTIALNFRYIEEPLRGINS-----EKIAFEFTEEM 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +V +R +  +         + F+++MPM+
Sbjct: 352 KAVTMRPEPAE---------DYFHIIMPMQ 372


>gi|328952218|ref|YP_004369552.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM
           11109]
 gi|328452542|gb|AEB08371.1| DNA polymerase III, beta subunit [Desulfobacca acetoxidans DSM
           11109]
          Length = 388

 Score =  273 bits (699), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 109/404 (26%), Positives = 201/404 (49%), Gaps = 39/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +E+  +L+  G    +I+R+   P+  H LL+A +  L+I A+  E+  +G  PA 
Sbjct: 1   MKLHIEKDALLQGAGRTQGVIDRRGHTPILSHCLLEAGNNQLKISATDYEVSFSGYYPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G +TV A   Y+I+R+L  G       EN   + + I  GD+ +     P   FP 
Sbjct: 61  VEEEGGLTVPAVSFYNILRELPAGTISLESTEN---SNLVIQVGDARYQFLGLPVENFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL--CAVATDG 178
             + E     EL++SVL  ++E+T F++A ++I+ +L G+      ED ++    V++DG
Sbjct: 118 LPKLENQPMIELSNSVLSEMLEKTIFSIAADDIQPHLTGVLLEKITEDGRIIVRLVSSDG 177

Query: 179 HRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           HRL++ + +I A  QI    +II+PRK V E+LR++ S++    + + +  I L      
Sbjct: 178 HRLSLIDREIPAIEQINLEKAIIIPRKGVAEMLRLI-SEEERCALGIEKKSIILRQGDKY 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + +RL+D ++P+Y+ +IP S +  + V        + R+S++S+ + + V + +S   L 
Sbjct: 237 LYIRLLDKKYPDYRRIIPASPEVRITVGRRAFLDVLKRISLLSAEKFKGVIMMVSEGWLD 296

Query: 297 MTVDNPDMGKAIESMNV-------------YYNEC----PMDICFNYKYLLEIIDNISSD 339
           +   NP++G   E + +               +E     P+ + +N +YL+E +  + S 
Sbjct: 297 IRYHNPEIGGGDERLPITVNFLNSEVVAEQERDEETLCLPIRLSYNARYLIEPLSVMQS- 355

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
               DE+ F L      + +R           N      ++MPM
Sbjct: 356 ----DEIYFELTKKKKPLCLRDA---------NDPKYLSIVMPM 386


>gi|125716889|ref|YP_001034022.1| DNA polymerase III subunit beta [Streptococcus sanguinis SK36]
 gi|125496806|gb|ABN43472.1| DNA polymerase III, beta chain, putative [Streptococcus sanguinis
           SK36]
          Length = 378

 Score =  273 bits (698), Expect = 3e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEITGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|325689355|gb|EGD31361.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK115]
          Length = 378

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|146317664|ref|YP_001197376.1| DNA polymerase III subunit beta [Streptococcus suis 05ZYH33]
 gi|223933959|ref|ZP_03625918.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591]
 gi|253750925|ref|YP_003024066.1| DNA polymerase III, beta chain [Streptococcus suis SC84]
 gi|253752824|ref|YP_003025964.1| DNA polymerase III, beta chain [Streptococcus suis P1/7]
 gi|253754649|ref|YP_003027789.1| DNA polymerase III, beta chain [Streptococcus suis BM407]
 gi|302023111|ref|ZP_07248322.1| DNA polymerase III subunit beta [Streptococcus suis 05HAS68]
 gi|330831851|ref|YP_004400676.1| DNA polymerase III subunit beta [Streptococcus suis ST3]
 gi|145688470|gb|ABP88976.1| DNA polymerase sliding clamp subunit [Streptococcus suis 05ZYH33]
 gi|223897378|gb|EEF63780.1| DNA polymerase III, beta subunit [Streptococcus suis 89/1591]
 gi|251815214|emb|CAZ50778.1| DNA polymerase III, beta chain [Streptococcus suis SC84]
 gi|251817113|emb|CAZ54834.1| DNA polymerase III, beta chain [Streptococcus suis BM407]
 gi|251819069|emb|CAR44083.1| DNA polymerase III, beta chain [Streptococcus suis P1/7]
 gi|319757174|gb|ADV69116.1| DNA polymerase III subunit beta [Streptococcus suis JS14]
 gi|329306074|gb|AEB80490.1| DNA polymerase III subunit beta [Streptococcus suis ST3]
          Length = 378

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I    
Sbjct: 3   QFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A    ++V  + D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK---QIVLTSGKSEITLKGKE 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + VLK  +  T FA +T+E R  L G+ F + E    L  V
Sbjct: 120 AEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        ++++P +++ E   + +    +V+V  S ++I    E 
Sbjct: 179 ATDSHRMSQRKLVLDTS-GDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP         +  NLR +++R  ++S+  +   VKL ++++
Sbjct: 238 ISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIANN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++ V  +   + I FN  YL+E +   +S     ++V     S
Sbjct: 298 VVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTS-----EQVKISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   ++          +   ++ P+R
Sbjct: 353 SVRPFTLIPNNE--------GEDFIQLVTPVR 376


>gi|307705908|ref|ZP_07642746.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597]
 gi|307620569|gb|EFN99667.1| DNA polymerase III, beta subunit [Streptococcus mitis SK597]
          Length = 378

 Score =  273 bits (698), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 IVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|332365095|gb|EGJ42860.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK355]
          Length = 378

 Score =  272 bits (697), Expect = 4e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNC-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|307707900|ref|ZP_07644375.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261]
 gi|307615965|gb|EFN95163.1| DNA polymerase III, beta subunit [Streptococcus mitis NCTC 12261]
          Length = 378

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S     ++V     S
Sbjct: 298 IVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|309799271|ref|ZP_07693519.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302]
 gi|308117116|gb|EFO54544.1| DNA polymerase III, beta subunit [Streptococcus infantis SK1302]
          Length = 378

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 ++  GS+ + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLINSLGSVLLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F ++    +L  V
Sbjct: 120 SEQYPRIQEIAASNPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLS-NHKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +   LRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVAKLRQSMERARLLSSATQNGTVKLEIKEG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++    +   + I FN  YL+E +  ++S     ++V     S
Sbjct: 298 IVSAHVHSPEVGKVNEEIDTENVSGADLTISFNPTYLIEALKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376


>gi|288803394|ref|ZP_06408827.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18]
 gi|288334214|gb|EFC72656.1| DNA polymerase III, beta subunit [Prevotella melaninogenica D18]
          Length = 374

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 180/386 (46%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +  + +   L    R+I  KN++P+    L + +DG L I AS  E  + G +   
Sbjct: 1   MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEVHDGQLTITASDSENVMRGTLNLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G+  V+ H + D V++L +         +E+   V   +G  NF +      E+P
Sbjct: 61  SCEGEGNFAVNNHTILDAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPILG--ADEYP 118

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +   +   +  L +  L + + R+ FA A +E+R  +NG++F + E+   L  VA+DG
Sbjct: 119 KAQSVSDNATTITLQAEKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDG--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V       +     S ++P+K    +  +LS     V +   E    ++    +++
Sbjct: 177 HKL-VRNKIFSIKSDSPASFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLA 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G++PNY +VIP  N  ++ ++  +L  A+ RV   +S   Q ++  +S+  L + 
Sbjct: 236 CRLIEGKYPNYNSVIPQDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSAGLLELN 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y   PM I F    +L+I++N+ S     D+VV +L   + + 
Sbjct: 296 AEDIDFATSAKESVTCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 VIVP------GTQPENEDILMLIMPM 370


>gi|221194950|ref|ZP_03568006.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626]
 gi|221184853|gb|EEE17244.1| DNA polymerase III, beta subunit [Atopobium rimae ATCC 49626]
          Length = 366

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 183/387 (47%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  TV +S +   L    + I    ++P+   V L+A +G LEI+++   + I   + A+
Sbjct: 1   MNFTVSQSSLQTALDIVMKGIGSNPSLPILSGVYLKAQEGTLEIQSNDLTVSIKHKVAAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   VSA +L  IV+ L D A    +++      + ++   S ++L   P +++P+
Sbjct: 61  VEEEGETVVSAKVLQTIVKNLPDAAITFKYEDEG----IKLTCQKSTYHLTVLPVADWPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S EL S++L  +V++ +  ++ +  R  L GIF    E  ++L  VATD  R
Sbjct: 117 FPEVVPEKSIELPSALLSKMVDKIYRVVSHDVSRPILQGIFLTAEENTIRL--VATDSFR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV +        +    I+  +A+  +L + +  + ++ V +S++++     + +   R
Sbjct: 175 LAVCDTHTDTPTGEKFEAIISGEAIHNVLSMRTMTE-TIMVGISDNQVVFTFGNTTHVSR 233

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMT 298
            I+G +P+Y+ ++  S    + +       A+  VS+++     AV+L +     ++C +
Sbjct: 234 KIEGNYPDYKKLLAPSCSTAITLPIEETSAAIKHVSVVALQNF-AVRLDIDAEGGEICFS 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G A E++        + I FNY+Y+ + ++ +S  +     V F L S      
Sbjct: 293 SSSPDQGNASETIKADVEGKSLTIGFNYQYVFDCLNALSEQK----SVRFELLSETQPAV 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +            K+N  Y+L+P+ +
Sbjct: 349 FKA---------SGKINYLYLLIPVHL 366


>gi|15899951|ref|NP_344555.1| DNA polymerase III subunit beta [Streptococcus pneumoniae TIGR4]
 gi|148988887|ref|ZP_01820302.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|148993606|ref|ZP_01823077.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68]
 gi|148997956|ref|ZP_01825469.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP11-BS70]
 gi|149003111|ref|ZP_01828020.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS69]
 gi|149007715|ref|ZP_01831324.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP18-BS74]
 gi|149020160|ref|ZP_01835134.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP23-BS72]
 gi|168487222|ref|ZP_02711730.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|168489314|ref|ZP_02713513.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195]
 gi|168493998|ref|ZP_02718141.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|168576112|ref|ZP_02722017.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016]
 gi|169834446|ref|YP_001693436.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           Hungary19A-6]
 gi|194397554|ref|YP_002036723.1| DNA polymerase III subunit beta [Streptococcus pneumoniae G54]
 gi|221230950|ref|YP_002510102.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC
           700669]
 gi|225853613|ref|YP_002735125.1| DNA polymerase III subunit beta [Streptococcus pneumoniae JJA]
 gi|225855737|ref|YP_002737248.1| DNA polymerase III subunit beta [Streptococcus pneumoniae P1031]
 gi|225857811|ref|YP_002739321.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 70585]
 gi|237651055|ref|ZP_04525307.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI
           1974]
 gi|237821168|ref|ZP_04597013.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CCRI
           1974M2]
 gi|298229493|ref|ZP_06963174.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str.
           Canada MDR_19F]
 gi|298255937|ref|ZP_06979523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae str.
           Canada MDR_19A]
 gi|298501758|ref|YP_003723698.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|303254903|ref|ZP_07340988.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455]
 gi|307066638|ref|YP_003875604.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae
           AP200]
 gi|307126153|ref|YP_003878184.1| DNA polymerase III subunit beta [Streptococcus pneumoniae 670-6B]
 gi|18266730|sp|O06672|DPO3B_STRPN RecName: Full=DNA polymerase III subunit beta
 gi|14971466|gb|AAK74195.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae TIGR4]
 gi|147755966|gb|EDK63009.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP11-BS70]
 gi|147758852|gb|EDK65848.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS69]
 gi|147760710|gb|EDK67682.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP18-BS74]
 gi|147925698|gb|EDK76774.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP6-BS73]
 gi|147927827|gb|EDK78849.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP9-BS68]
 gi|147930838|gb|EDK81819.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP23-BS72]
 gi|168996948|gb|ACA37560.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           Hungary19A-6]
 gi|183569923|gb|EDT90451.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1087-00]
 gi|183572312|gb|EDT92840.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae SP195]
 gi|183575839|gb|EDT96367.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC3059-06]
 gi|183578124|gb|EDT98652.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae MLV-016]
 gi|194357221|gb|ACF55669.1| DNA polymerase III beta subunit [Streptococcus pneumoniae G54]
 gi|220673410|emb|CAR67868.1| DNA polymerase III, beta chain [Streptococcus pneumoniae ATCC
           700669]
 gi|225720912|gb|ACO16766.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 70585]
 gi|225723086|gb|ACO18939.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae JJA]
 gi|225725186|gb|ACO21038.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae P1031]
 gi|298237353|gb|ADI68484.1| DNA-directed DNA polymerase [Streptococcus pneumoniae TCH8431/19A]
 gi|301793327|emb|CBW35686.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV104]
 gi|302598174|gb|EFL65235.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS455]
 gi|306408175|gb|ADM83602.1| DNA polymerase sliding clamp subunit [Streptococcus pneumoniae
           AP200]
 gi|306483215|gb|ADM90084.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae 670-6B]
 gi|332071324|gb|EGI81819.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17545]
 gi|332071686|gb|EGI82179.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA17570]
 gi|332198659|gb|EGJ12742.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41317]
 gi|332199069|gb|EGJ13150.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47901]
          Length = 378

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|296875520|ref|ZP_06899592.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 15912]
 gi|296433444|gb|EFH19219.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           parasanguinis ATCC 15912]
          Length = 378

 Score =  272 bits (697), Expect = 5e-71,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 170/392 (43%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   + +      + +  S  +I I   I    
Sbjct: 3   NFSINKTLFLQALNTTKRAISSKNAIPILSTIKIDVTPEGVALSGSNGQISIENFISIKD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D        E +   +V ++ G S   L+   
Sbjct: 63  ENAGLLVTSPGSILLEATFFINVVSSLPDVTLDFKEIEQK---QVLLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK L+  T FA + +E R  L G+ F +++    L  V
Sbjct: 120 ADQYPRIQEIVASNPLVLETKLLKQLINETAFAASVQESRPILTGVHFVLSDNKD-LKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +++P +++ E   + S    +V+V  + ++I    E 
Sbjct: 179 ATDSHRMSQKVITLEKN-GDNFDVVIPSRSLREFTSVFSDDIETVEVFFANNQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   + E   N  NLR A++R  ++S+  +   VKL   + 
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFNTEATFNVANLRFAMERARLLSNATQNGTVKLEFKNG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++G+  E ++    +   + I FN  YL+E +  I S     ++VV R  S
Sbjct: 298 VVSSHVHSPEVGRVNEEIDTSAVSGEDLSISFNPTYLIEALKAIDS-----EQVVIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +  +  +             ++ P+R
Sbjct: 353 SVRPFTLVPEGNEQ--------GFIQLITPVR 376


>gi|149013382|ref|ZP_01834091.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP19-BS75]
 gi|182682972|ref|YP_001834719.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14]
 gi|303259728|ref|ZP_07345704.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293]
 gi|303262195|ref|ZP_07348140.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS292]
 gi|303265391|ref|ZP_07351298.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397]
 gi|303266061|ref|ZP_07351955.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457]
 gi|303268469|ref|ZP_07354263.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458]
 gi|147762905|gb|EDK69853.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP19-BS75]
 gi|182628306|gb|ACB89254.1| DNA polymerase III subunit beta [Streptococcus pneumoniae CGSP14]
 gi|301800975|emb|CBW33636.1| DNA polymerase III, beta chain [Streptococcus pneumoniae INV200]
 gi|302636835|gb|EFL67325.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           SP14-BS292]
 gi|302639280|gb|EFL69739.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP-BS293]
 gi|302641970|gb|EFL72323.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS458]
 gi|302644365|gb|EFL74618.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS457]
 gi|302645068|gb|EFL75308.1| DNA polymerase III subunit beta [Streptococcus pneumoniae BS397]
          Length = 378

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|34580501|ref|ZP_00141981.1| DNA polymerase III beta chain [Rickettsia sibirica 246]
 gi|28261886|gb|EAA25390.1| DNA polymerase III beta chain [Rickettsia sibirica 246]
          Length = 379

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  ++V LS ++I     E+ SM
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEVLLSSNKIKFICNENTSM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDV-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|15902046|ref|NP_357596.1| DNA polymerase III subunit beta [Streptococcus pneumoniae R6]
 gi|116516939|ref|YP_815419.1| DNA polymerase III subunit beta [Streptococcus pneumoniae D39]
 gi|30315898|sp|P59651|DPO3B_STRR6 RecName: Full=DNA polymerase III subunit beta
 gi|2109446|gb|AAC45337.1| beta subunit of DNA polymerase III [Streptococcus pneumoniae]
 gi|15457530|gb|AAK98806.1| DNA biosynthesis; sliding clamp subunit, required for high
           processivity; DNA polymerase III beta-subunit
           [Streptococcus pneumoniae R6]
 gi|116077515|gb|ABJ55235.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae D39]
          Length = 378

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|312130942|ref|YP_003998282.1| DNA polymerase iii, beta subunit [Leadbetterella byssophila DSM
           17132]
 gi|311907488|gb|ADQ17929.1| DNA polymerase III, beta subunit [Leadbetterella byssophila DSM
           17132]
          Length = 374

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 177/386 (45%), Gaps = 17/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  +++L+ L +   +I     +P+  + L + +   L + AS  +  +   +  +
Sbjct: 1   MKFIVSSTELLKNLSYISGVIAPNPIVPILENFLFELDQNKLVVTASDMQTVMVAELDVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                SI + A LL D ++ L +         +  G E+  S G   F +      +FP 
Sbjct: 61  SSDVASIAIPARLLMDTLKSLPEQPITVNLNTDTFGVEIVTSTG--RFKITGENPLDFPR 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    ++ EL S VL   +  T FA +T+++R  + G+F  I  +      VATDGHR
Sbjct: 119 PPQVNKNFNIELNSDVLAAAINNTIFATSTDDLRPAMTGVFMDIQSDHTTF--VATDGHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L +       Q +    +I+PRKA+  +   L S    V    S S    +  ++ +  R
Sbjct: 177 L-IRYRRNDIQSSTDNRLILPRKALNLLKSSLPSDVVPVVTEFSSSNAFFSFGNIKLICR 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID  +P+Y NVIP +N  +L V  +     + R+SI S+     ++L +  ++L ++ +
Sbjct: 236 LIDERYPDYDNVIPKANPYKLIVERSTFLATLKRISIFSNKTTHQIRLKMEPNELTISAE 295

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D   +A+E +   ++   ++I FN K+L E++ N+SS  V+       L   N +  I
Sbjct: 296 DLDYSNEAVEKIACEFDGELLEIGFNAKFLSEMLSNLSSSTVM-----MELSQPNRAGLI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +K +  +   ++MP+ +
Sbjct: 351 VP------TSKQDNEDILMLVMPVML 370


>gi|15892506|ref|NP_360220.1| DNA polymerase III subunit beta [Rickettsia conorii str. Malish 7]
 gi|20137866|sp|Q92I37|DPO3B_RICCN RecName: Full=DNA polymerase III subunit beta
 gi|15619665|gb|AAL03121.1| DNA polymerase III beta chain [Rickettsia conorii str. Malish 7]
          Length = 379

 Score =  272 bits (696), Expect = 6e-71,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ LS ++I     E+ SM
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTSM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDV-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|325695761|gb|EGD37660.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK150]
 gi|332363607|gb|EGJ41388.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1059]
 gi|332364165|gb|EGJ41942.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK49]
          Length = 378

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|88854500|ref|ZP_01129167.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1]
 gi|88816308|gb|EAR26163.1| DNA polymerase III subunit beta [marine actinobacterium PHSC20C1]
          Length = 381

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 82/387 (21%), Positives = 183/387 (47%), Gaps = 16/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R    E +  A +++ ++ T+P+   VL++A D  L + +   E+     I A 
Sbjct: 1   MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATDEGLTLSSFDYEVSARTQIKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + VS  LL +I  +L +       ++N    ++ ++ G  +F L S P  E+P+
Sbjct: 61  VDEPGRVLVSGKLLAEIASRLPNAPVRFSTEDN----KITVACGTGHFTLSSMPVEEYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        L + +    + +   A + +++   + G+   +++ ++ L  VATD +R
Sbjct: 117 LPQISDQVG-TLKADLFSAAIAQVAVAASRDDVTPVITGVQLEVSQNNISL--VATDRYR 173

Query: 181 LAVAEVDIVAQIA--KMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESR--IHLNIESL 235
           +AV +++  A  +  +  + +VP K + E+ +   +S + SV ++ ++ R  I  + ++ 
Sbjct: 174 VAVRDIEWDAGASGVESATALVPAKTLVEVGKTFGNSGEISVAITSTDERELIAFHADNK 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           +++  LI G FP  + + P + D    +N   L +AV RVS++   R  A++ + +++ +
Sbjct: 234 TVTSLLIKGNFPPVRRLFPETVDNFAVMNTAELIEAVRRVSLVL-EREAALRFTFTTEGV 292

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     +  +A E+++ +       +    ++L++ + ++ S+ V          +   
Sbjct: 293 TLEAIGSEQAQASETIDAFLTGDDTVVSLKPQFLIDGLSSVHSEFVRISFTKTENPNKPG 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            V I  +   S  ++    N  Y+L P
Sbjct: 353 PVLITSQ---SSKDQPGSDNYKYLLQP 376


>gi|332359495|gb|EGJ37314.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1056]
          Length = 378

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V++  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIAGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S     ++V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|327467737|gb|EGF13231.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK330]
          Length = 378

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSVLTFNTSDLRAAMERARLLSNATQNGTVKLEIADG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S     ++V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|270291827|ref|ZP_06198042.1| DNA polymerase III, beta subunit [Streptococcus sp. M143]
 gi|270279355|gb|EFA25197.1| DNA polymerase III, beta subunit [Streptococcus sp. M143]
          Length = 378

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   + +  N+  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVNNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S     ++V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376


>gi|227873172|ref|ZP_03991463.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268]
 gi|227841003|gb|EEJ51342.1| possible DNA-directed DNA polymerase [Oribacterium sinus F0268]
          Length = 374

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 178/385 (46%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++ +++D+L  L    + +  K T+ +   +L+ A +G + +  +  +  I    P  
Sbjct: 1   MKLSFQKNDLLSTLQVVGKAVASKTTLSIMECILVDATEGQIRLTGNKNDFGIESICPGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A L  +I+++L      +     E      I    S F +      EF S
Sbjct: 61  ILEPGKIALEARLFQEIIKRLPQTEGKNILLSTEENGNCTIQCEKSVFKIMGRNPDEFTS 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E     E++   L+N++ +T F+ A+ E    + G +F I   D +    A DGHR
Sbjct: 121 LPSVEKQEIVEISQLSLRNMINQTIFSTASGENNKKMTGEYFEII--DNQFSITALDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +A+ + ++ ++     S IVP++ + E+ +I+S   +  V++  S+  +  + E   +  
Sbjct: 179 IAIRKTEL-SESYDNCSAIVPKEVLSELSKIISGGLEDKVEICFSKQYLQFSFEDTIVVT 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMT 298
           +L++GE+ + + ++    + ++R+N     + +DR  I++     Q + L +    L + 
Sbjct: 238 QLVEGEYFHVRQMLSSDYETKIRLNRKQFLENIDRARILARDNDKQPLILKIEDQSLSLK 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           + + D+G+    M V      + I FN  YL++ + NI      ++EV      S S VF
Sbjct: 298 IVS-DIGRMDAEMPVQQEGKDLLIGFNPTYLMDALQNIE-----EEEVDLYFTISRSPVF 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR +++          +  Y+++P+
Sbjct: 352 IRDQEE----------SYNYMILPV 366


>gi|293364517|ref|ZP_06611242.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis
           ATCC 35037]
 gi|306826188|ref|ZP_07459523.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|307702807|ref|ZP_07639757.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037]
 gi|315612158|ref|ZP_07887073.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|331265440|ref|YP_004325070.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5]
 gi|291317025|gb|EFE57453.1| DNA-directed DNA polymerase III beta subunit [Streptococcus oralis
           ATCC 35037]
 gi|304431664|gb|EFM34645.1| DNA-directed DNA polymerase III beta subunit [Streptococcus sp.
           oral taxon 071 str. 73H25AP]
 gi|307623663|gb|EFO02650.1| DNA polymerase III, beta subunit [Streptococcus oralis ATCC 35037]
 gi|315315719|gb|EFU63756.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis ATCC 49296]
 gi|326682112|emb|CBY99728.1| DNA polymerase III subunit beta [Streptococcus oralis Uo5]
          Length = 378

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S     ++V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376


>gi|307711217|ref|ZP_07647639.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321]
 gi|307617179|gb|EFN96357.1| DNA polymerase III, beta subunit [Streptococcus mitis SK321]
          Length = 378

 Score =  272 bits (696), Expect = 7e-71,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVNSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D +           ++ P+R
Sbjct: 353 AVRPFTLVPADTDEE--------FMQLITPVR 376


>gi|332077809|gb|EGI88268.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA41301]
          Length = 378

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQ-YKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|225352381|ref|ZP_03743404.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
 gi|225156888|gb|EEG70257.1| hypothetical protein BIFPSEUDO_03998 [Bifidobacterium
           pseudocatenulatum DSM 20438]
          Length = 386

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 87/387 (22%), Positives = 166/387 (42%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 13  MKVEVNSQALADAVAWTTRVIDARPASPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 72

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  GSI V   LL DI + L              G+ + I+ G S F +Q  P++E+P 
Sbjct: 73  VDESGSILVLGKLLADITKSLPAAKTYLSTD----GSTLTITSGKSTFTMQLMPDNEYPD 128

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                       A +  + + +    A++ EE R  L GI         K+   +TD  R
Sbjct: 129 LPVVPAKLGQVDAQTFAQAVAQA-SVAVSREENRPVLTGIRVQFQGN--KVIMSSTDRFR 185

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---IHLNIESLSM 237
           L+ +      +   + +  + R A+   +     +  ++ V         +         
Sbjct: 186 LSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVVDFDPENPSLLGFENAGRVS 245

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +          +N  +L  A+ RVS+++  R   ++++ +S +L +
Sbjct: 246 TSQLIDGEFPAVDRLYADEYPIHAVINKQDLISAIKRVSLVA-ERNAPIRMAFTSQELTL 304

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T  + D  +A E +++  +   + + FN  YL+E +  IS     +  V  ++ ++   V
Sbjct: 305 TAGSVDEAQAKEILDIDMDGEDITVAFNPAYLIEGLSAIS-----EPFVRMKMTTAVKPV 359

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +   +N +  ++  Y+L+PMR
Sbjct: 360 EFNGQQE---SNSEESMDYRYLLVPMR 383


>gi|148984546|ref|ZP_01817834.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71]
 gi|225860014|ref|YP_002741523.1| DNA polymerase III subunit beta [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|147923323|gb|EDK74437.1| DNA polymerase III subunit beta [Streptococcus pneumoniae SP3-BS71]
 gi|225727256|gb|ACO23107.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           Taiwan19F-14]
 gi|301799151|emb|CBW31663.1| DNA polymerase III, beta chain [Streptococcus pneumoniae OXC141]
 gi|327388987|gb|EGE87335.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA04375]
          Length = 378

 Score =  272 bits (695), Expect = 8e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIEAVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|168484306|ref|ZP_02709258.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|172042453|gb|EDT50499.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC1873-00]
 gi|332198866|gb|EGJ12948.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae GA47368]
          Length = 378

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|306828595|ref|ZP_07461789.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis
           ATCC 6249]
 gi|304429203|gb|EFM32289.1| DNA-directed DNA polymerase III beta subunit [Streptococcus mitis
           ATCC 6249]
          Length = 378

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 173/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F ++    +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLS-NHKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLR +++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRHSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGNDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTDE--------DFMQLITPVR 376


>gi|50953927|ref|YP_061215.1| DNA polymerase III subunit beta [Leifsonia xyli subsp. xyli str.
           CTCB07]
 gi|50950409|gb|AAT88110.1| DNA polymerase III, beta subunit [Leifsonia xyli subsp. xyli str.
           CTCB07]
          Length = 381

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 166/388 (42%), Gaps = 18/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    R    E +  A +++ ++ T+P+   VL++  +  L++ +   E+     I A 
Sbjct: 1   MKFQANRDVFSEAVSFAVKLLPQRTTLPILSGVLIETTENGLQLSSFDYEVSAQTKIAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + VS  LL +I  KL +       +E    +++ +  G +NF L S P  E+PS
Sbjct: 61  VEETGRVLVSGRLLAEIAAKLPNAPVQFSTEE----SKIIVKAGSANFTLLSMPVEEYPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +          +      V +   A + +++   + G+   + +  L L  VATD +R
Sbjct: 117 IPDVSGEAGLV-PAEEFAEAVAQVGVAASRDDVTPVITGVQLEVGDNTLGL--VATDRYR 173

Query: 181 LAVAEVDIVAQI--AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIES 234
           +AV E+D        +  + +VP + + EI + L     +V ++++       I    + 
Sbjct: 174 VAVREIDWDNGTTLGETKTALVPARTLTEIGKTLGHS-GTVSIAITNRDDRELIAFTDDR 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +++  LI G FP  + + P   +    +N   L +A  RVS++   R  A++ + ++D 
Sbjct: 233 KTVTSLLIKGNFPPVRRLFPDQVENHAVMNTAELIEATRRVSLVL-EREAALRYTFTADG 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     +  +A ES++         +    ++LL+ +  + S+ V          +  
Sbjct: 292 LTLEAIGSEQAQASESIDALLTGQETVVSLKPQFLLDGLGAVHSEFVRISFTKTENPNKP 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
             V I  +    +   D   +  Y+L P
Sbjct: 352 GPVLITSQTSKDQAGAD---SYKYLLQP 376


>gi|307710360|ref|ZP_07646801.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564]
 gi|307618952|gb|EFN98087.1| DNA polymerase III, beta subunit [Streptococcus mitis SK564]
          Length = 378

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  ++ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFIQALNITKRAISSKNAIPILSTVKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|328945175|gb|EGG39330.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1087]
          Length = 378

 Score =  272 bits (695), Expect = 9e-71,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEITGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S     ++V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|322515791|ref|ZP_08068736.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           vestibularis ATCC 49124]
 gi|322125753|gb|EFX97071.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           vestibularis ATCC 49124]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 183/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISASE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   ++V  L D   ++   E     +V +  G S   L+   
Sbjct: 63  ENAGLLITRPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 VEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    +    +++P +++ E+  + S    ++++  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 NVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKS-----ETVRVRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|190410684|ref|YP_001965254.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1]
 gi|84872699|gb|ABC67436.1| hypothetical protein pFRL1.48 [Streptomyces sp. FR1]
          Length = 372

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 169/387 (43%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK+ ++ +D+   + +A R +  +   PV   +LL A  D  L I+A   E+     +PA
Sbjct: 1   MKLRIDHADLAAAVCYAARTLPSRPPAPVLAGLLLDATGDERLRIRAFDYEVSADTTVPA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G   V   LL DI   L+D   +     +  GT + +  G + F L   P  E+P
Sbjct: 61  AITTPGRALVPGRLLADITTTLRDDVHL-----DLDGTRLTLRAGSARFTLPLLPLEEYP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E     +  L++      V +   A++ EE    L GI    + E   L   ATD +
Sbjct: 116 TLPE-PGDVTGTLSAPAFAEAVAQVACAVSREEALPVLTGISLRHDHEASTLTLSATDRY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH-LNIESLSMS 238
           R AV  +            ++P +A+ +  +  +   +   V  + S +  L  E  + +
Sbjct: 175 RYAVRTLPWKDAHLPDTGAVIPGRALLDAAKAAAGDATVDLVLPARSGLFALRGEQHTTT 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-SDKLCM 297
           +R +DGE P Y ++ P        V    L+ AV RV+++S  +   ++++ +    L +
Sbjct: 235 IRALDGELPKYASLFPTEFAHTATVEIDALKAAVQRVALVSPKKDGPIRMTFAGDGTLVL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              + D  +A+++++   +   + I FN  +LL+ +  +++     + V F   SS    
Sbjct: 295 ESGSGDDAQALDAVDTALDGAELTIAFNPAFLLDGLSALTA-----ESVRFDFTSSTKPA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + G   D +  +       Y+LMP+R
Sbjct: 350 VLSGHGSDDQALR-------YLLMPIR 369


>gi|306826409|ref|ZP_07459723.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           pyogenes ATCC 10782]
 gi|304431404|gb|EFM34399.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           pyogenes ATCC 10782]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + ++  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETKVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|157964502|ref|YP_001499326.1| DNA polymerase III subunit beta [Rickettsia massiliae MTU5]
 gi|157844278|gb|ABV84779.1| DNA polymerase III beta chain [Rickettsia massiliae MTU5]
          Length = 379

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 113/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGEFTVSTKTLNDIVRKLPDSEL---TLTDRGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ LS ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|21909538|ref|NP_663806.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS315]
 gi|28894914|ref|NP_801264.1| DNA polymerase III subunit beta [Streptococcus pyogenes SSI-1]
 gi|21903718|gb|AAM78609.1| beta subunit of DNA polymerase III [Streptococcus pyogenes MGAS315]
 gi|28810159|dbj|BAC63097.1| putative DNA polymerase III beta subunit [Streptococcus pyogenes
           SSI-1]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   I+   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ININVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPGKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|168491772|ref|ZP_02715915.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC0288-04]
 gi|183573995|gb|EDT94523.1| DNA polymerase III, beta subunit [Streptococcus pneumoniae
           CDC0288-04]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQ-YKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  N  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSMERARLLSSATQNGTVKLEIKDG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGKDLTISFNPTYLIDSLKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         N   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------ENFMQLITPVR 376


>gi|322388481|ref|ZP_08062084.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           infantis ATCC 700779]
 gi|321140794|gb|EFX36296.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           infantis ATCC 700779]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IPV   + +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQSLNITKRAISSKNAIPVLSTIKIDVTNEGITLIGSNGQISIENFISQKD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 ++  GSI + A    ++V  L D        E     ++ ++ G S   L+   
Sbjct: 63  ENAGLLINSLGSILLEASFFINVVSSLPDVTLDFKEIEQH---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA + +E R  L G+ F ++    +L  V
Sbjct: 120 SEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLS-NHKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +    +    +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKN-SDNFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERARLLSSATQNGTVKLEIKQG 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ +  +   + I FN  YL+E +  ++S++     V     S
Sbjct: 298 VVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|94993398|ref|YP_601496.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10750]
 gi|94546906|gb|ABF36952.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10750]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIQALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|322392424|ref|ZP_08065884.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris
           ATCC 700780]
 gi|321144416|gb|EFX39817.1| DNA-directed DNA polymerase III beta subunit [Streptococcus peroris
           ATCC 700780]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 179/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IPV   + +  N+  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPVLSTIKIDVNNEGITLIGSNGQISIENFISQKD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 ++  GSI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLINSLGSILLEASFFINVVSSLPDVTLDFKEIEQD---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA + +E R  L G+ F ++    +L  V
Sbjct: 120 SEQYPRIQEIAASNPLVLETKLLKKIINETAFAASVQESRPILTGVHFVLS-NHKELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +    +    +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKN-SDNFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTVTFDVVNLRQSMERSRLLSSATQNGTVKLEIKQG 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ +  +   + I FN  YL+E +  ++S++     V     S
Sbjct: 298 VVTAHVNSPEVGKVNEEIDTIAVSGEDLTISFNPTYLIEALKALNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|312864131|ref|ZP_07724366.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396]
 gi|311100363|gb|EFQ58571.1| DNA polymerase III, beta subunit [Streptococcus vestibularis F0396]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 183/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDSIYLTGSNGQISIENSISASE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   ++V  L D   ++   E     +V +  G S   L+   
Sbjct: 63  ENAGLLITRPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 VEQYPRIQEVDSLTPLVMDTKVLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    +    +++P +++ E+  + S    ++++  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSSDNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNSSQSGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 NVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKS-----ETVRVRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|228476802|ref|ZP_04061450.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126]
 gi|228251539|gb|EEK10676.1| DNA polymerase III, beta subunit [Streptococcus salivarius SK126]
          Length = 378

 Score =  271 bits (694), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I  S 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISVSE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   ++V  L D   ++   E     +V +  G S   L+   
Sbjct: 63  ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 VEQYPRIQEVDSLTPLLMDTKVLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    A    +++P +++ E+  + S    +++V  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDDIENLEVFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 SVSAHVNSPEVGKVNEDIDVQDVSGSDLVISFNPTYLIDALKALKS-----ETVRVRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|11320911|gb|AAG33951.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 108/383 (28%), Positives = 207/383 (54%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ +  ++ L +  R I +  + P+  +VL+   + +L + A+  EIE+   I  S
Sbjct: 1   MKFNIKNNIFVQHLQNVNRFITKNTSFPILENVLISIKNRILSLTATNLEIELISNIELS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V GSITVS+  L  I R   + + I     N    ++++    S++ L + P  +FP
Sbjct: 61  KHYVPGSITVSSRKLLQICRNSLNSSNIQVELHN---NKMHVISEKSHYILNTLPSDDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     Y+  F + S +LK ++E+THF+M  +++RYYLNG+ F I +  L +  VATDG+
Sbjct: 118 NHNNXCYISEFTIQSKILKEMIEKTHFSMGKQDVRYYLNGMLFKIXDNSLHI--VATDGY 175

Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL  ++  +   +I K  SII+ RK + E+ ++L+S    VKV +  S I + IE L  +
Sbjct: 176 RLGTSKTLLTKEEIIKNFSIIIARKGITELYKLLNSSTQLVKVFIGRSNIRIYIEQLIFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY+++     +  + +NC  L+Q++ R +I++  +   +++ ++ D+  + 
Sbjct: 236 AQLIEGKFPNYESIFLKKKNNGIILNCQLLKQSLLRAAILAHEKFCGIEIHVNKDQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ ++ Y    ++I  N  Y+L+I++ I+S       ++   + SN+S+ 
Sbjct: 296 SDNQEEETAEDTFDINYIGPSIEISINVYYILDILNVINSK-----NILLFPNYSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +         N  +  Y++M
Sbjct: 351 IEAE---------NDASTIYIVM 364


>gi|78101467|pdb|2AWA|A Chain A, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
 gi|78101468|pdb|2AWA|B Chain B, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
 gi|78101469|pdb|2AWA|C Chain C, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
 gi|78101470|pdb|2AWA|D Chain D, Crystal Structure Of Dna Polymerase Iii, Beta Chain (Ec
           2.7.7.7) (Np_344555.1) From Streptococcus Pneumoniae
           Tigr4 At 2.50 A Resolution
          Length = 390

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 175/391 (44%), Gaps = 27/391 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
            ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    +
Sbjct: 16  FSINKNLFLQALNTTKRAISSKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISQKNE 75

Query: 63  VCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
             G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+    
Sbjct: 76  DAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKDS 132

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  VA
Sbjct: 133 EQYPRIQEISASTPLILETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTVA 191

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E++
Sbjct: 192 TDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSENI 250

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDK 294
           S   RL++G +P+   +IP   +  +  N  NLRQ+ +R  ++SS  +   VKL +    
Sbjct: 251 SFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQSXERARLLSSATQNGTVKLEIKDGV 310

Query: 295 LCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +   V +P++GK  E ++        + I FN  YL++ +  ++S++     V     S+
Sbjct: 311 VSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTYLIDSLKALNSEK-----VTISFISA 365

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                +   D D         +   ++ P+R
Sbjct: 366 VRPFTLVPADTD--------EDFXQLITPVR 388


>gi|94989511|ref|YP_597611.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10270]
 gi|94543019|gb|ABF33067.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS10270]
          Length = 378

 Score =  271 bits (693), Expect = 1e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLENTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|15674252|ref|NP_268425.1| DNA polymerase III subunit beta [Streptococcus pyogenes M1 GAS]
 gi|71909816|ref|YP_281366.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS5005]
 gi|13621327|gb|AAK33147.1| beta subunit of DNA polymerase III [Streptococcus pyogenes M1 GAS]
 gi|71852598|gb|AAZ50621.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS5005]
          Length = 378

 Score =  271 bits (693), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|50913348|ref|YP_059320.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS10394]
 gi|139472890|ref|YP_001127605.1| DNA polymerase III subunit beta [Streptococcus pyogenes str.
           Manfredo]
 gi|50902422|gb|AAT86137.1| DNA polymerase III beta chain [Streptococcus pyogenes MGAS10394]
 gi|134271136|emb|CAM29346.1| DNA polymerase III, beta chain [Streptococcus pyogenes str.
           Manfredo]
          Length = 378

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTPTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|56808864|ref|ZP_00366575.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Streptococcus pyogenes M49 591]
 gi|71902669|ref|YP_279472.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS6180]
 gi|94987633|ref|YP_595734.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS9429]
 gi|94991499|ref|YP_599598.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS2096]
 gi|209558589|ref|YP_002285061.1| DNA polymerase III subunit beta [Streptococcus pyogenes NZ131]
 gi|71801764|gb|AAX71117.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS6180]
 gi|94541141|gb|ABF31190.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS9429]
 gi|94545007|gb|ABF35054.1| DNA polymerase III, beta chain [Streptococcus pyogenes MGAS2096]
 gi|209539790|gb|ACI60366.1| Beta subunit of DNA polymerase III [Streptococcus pyogenes NZ131]
          Length = 378

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNATKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|21672305|ref|NP_660372.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
 gi|232008|sp|P29439|DPO3B_BUCAP RecName: Full=DNA polymerase III subunit beta
 gi|144150|gb|AAA73150.1| dnaN [Buchnera aphidicola]
 gi|2827015|gb|AAC38107.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|21622904|gb|AAM67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. Sg
           (Schizaphis graminum)]
          Length = 366

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 208/382 (54%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++   + + L    R++ +  + P+  ++L+Q  DG L +  +  EIE+   I   
Sbjct: 1   MKFTIQNDILTKNLKKITRVLVKNISFPILENILIQVEDGTLSLTTTNLEIELISKIEII 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + G  T+S   + +I R L + ++I    +N+   ++ IS  +SN+ L +     FP
Sbjct: 61  TKYIPGKTTISGRKILNICRTLSEKSKIKMQLKNK---KMYISSENSNYILSTLSADTFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +  +Y+  F+++S++LK ++E+T F+M  +++RYYLNG+     ++ L+  +VATDG+
Sbjct: 118 NHQNFDYISKFDISSNILKEMIEKTEFSMGKQDVRYYLNGMLLEKKDKFLR--SVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +   I    SII+P KAV E+L++L+++   + + +  + I +  ++L  + 
Sbjct: 176 RLAISYTQLKKDI-NFFSIIIPNKAVMELLKLLNTQPQLLNILIGSNSIRIYTKNLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++V+       +  N   L++++ RV+I++  +   +++ + + K  +  
Sbjct: 235 QLIEGEYPDYKSVLFKEKKNPIITNSILLKKSLLRVAILAHEKFCGIEIKIENGKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +   + Y    ++I  N  YLL++I+NI S     + +   L+ S SS+ I
Sbjct: 295 DNQEEETAEDLFEIDYFGEKIEISINVYYLLDVINNIKS-----ENIALFLNKSKSSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             ++  S           YV+M
Sbjct: 350 EAENNSSNA---------YVVM 362


>gi|148269798|ref|YP_001244258.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1]
 gi|281412318|ref|YP_003346397.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10]
 gi|147735342|gb|ABQ46682.1| DNA polymerase III, beta subunit [Thermotoga petrophila RKU-1]
 gi|281373421|gb|ADA66983.1| DNA polymerase III, beta subunit [Thermotoga naphthophila RKU-10]
          Length = 366

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 185/387 (47%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKITV   ++ + +  A + + +K+  P+    L +  DG   I  +  E  +   + A 
Sbjct: 1   MKITVTTLELRDKITIASKALAKKSVKPILAGFLFEVKDGNFYICTTDLETGVKATVNAA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   ++  +V+ L D       +    G  + IS G + F + + P  EFP
Sbjct: 61  EISGEARFVVPGDIIQKLVKVLPDEITELSLE----GDVLVISSGSTVFRITTMPADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   +FE+  S+L+ +VE+  FA A +E    LNG+F+ +++  L+L  VA+DG 
Sbjct: 117 EITPAESGITFEVDISLLEEMVEKVIFAAAKDEFMRNLNGVFWELHKNLLRL--VASDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           RLA+AE     +  +  S ++  K++ E+  +L +     + V     R+ L    +   
Sbjct: 175 RLALAEE--QIENEEETSFLLSLKSMKEVQNVLDNTTEPTITVRYDGRRVSLTTNDVETV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R++D EFP+Y+ VIP +   ++ V+  +L +++ RV +++S   ++VK  +  + + + 
Sbjct: 233 MRVVDAEFPDYKRVIPETFKTKVVVSRKDLMESLKRVMVIASKGSESVKFEIEENVMRLV 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G+ I+ + V      + I FN K++ +++ +I +     +E+      S S   
Sbjct: 293 SKSPDYGEVIDEVEVQKEGEDLVIAFNPKFIEDVLKHIET-----EEIEMNFVDSTSPCQ 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D              Y++MP+R+
Sbjct: 348 INPLD---------ISGYLYIVMPIRL 365


>gi|157828455|ref|YP_001494697.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165933170|ref|YP_001649959.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. Iowa]
 gi|157800936|gb|ABV76189.1| DNA polymerase III subunit beta [Rickettsia rickettsii str. 'Sheila
           Smith']
 gi|165908257|gb|ABY72553.1| DNA polymerase III, beta chain [Rickettsia rickettsii str. Iowa]
          Length = 379

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 112/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ L+ ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|67459041|ref|YP_246665.1| DNA polymerase III subunit beta [Rickettsia felis URRWXCal2]
 gi|75536523|sp|Q4ULS3|DPO3B_RICFE RecName: Full=DNA polymerase III subunit beta
 gi|67004574|gb|AAY61500.1| DNA polymerase III beta chain [Rickettsia felis URRWXCal2]
          Length = 379

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 113/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G +TVS   L DIVRKL D         +   T + I   +  F L + P S FP  
Sbjct: 63  VSEGELTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPPM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ LS ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|52142810|ref|YP_084019.1| DNA polymerase III subunit beta [Bacillus cereus E33L]
 gi|51976279|gb|AAU17829.1| DNA polymerase III, beta subunit [Bacillus cereus E33L]
          Length = 376

 Score =  270 bits (692), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDKQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S R    V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASERANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++V   +  ++I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374


>gi|296271493|ref|YP_003654125.1| DNA polymerase III subunit beta [Thermobispora bispora DSM 43833]
 gi|296094280|gb|ADG90232.1| DNA polymerase III, beta subunit [Thermobispora bispora DSM 43833]
          Length = 364

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 161/385 (41%), Gaps = 25/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V R  + + +    R++  ++T+P    +LL+A+   L I     E+     I A 
Sbjct: 1   MKIRVNRDVLADAVAWTARLLPGRSTVPALSGLLLEADAD-LRISVFDYEVSAWAQIEAD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +   +L +I + L D     +      G E  ++ G   + L   P+ +FPS
Sbjct: 60  VAAPGRVLIPGRVLAEITKSLPDRPVDLY----RDGGEAVLTCGSLEYDLLVLPDEDFPS 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                          V  +   +   A + ++    L G+   I  + +++   ATD +R
Sbjct: 116 LPAMPPKAGAVG-GGVFASAAGQVAAAASRDDSLPMLTGVRIDI--DGVRVSMAATDRYR 172

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A  E     +       ++VP + + E  R L  ++  + + L E+ I L  +  ++ V
Sbjct: 173 IAAREFLWHPERPDERRGVVVPARLLVEAARSL--REGEISIGLGENVIGLRNQDRTVIV 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL+D +F +Y++ +         +      +AV RV++++      V+L+ S  ++ +  
Sbjct: 231 RLLDDQFIDYRSRLSEQWPIHADLALAPFVEAVKRVTLVAEPNT-PVRLAFSPGQVLIRA 289

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
               +G++ E +    +   +DI F   +LL+ +  + +     + V   + +   +  I
Sbjct: 290 GGGSIGRSTEIVAAELDGPDIDIAFQPHFLLDGLAGVET-----ERVRLHMATPTRAALI 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             +  D            Y++MP+R
Sbjct: 345 TEEGDDPA--------FRYLVMPVR 361


>gi|229586697|ref|YP_002845198.1| DNA polymerase III subunit beta [Rickettsia africae ESF-5]
 gi|228021747|gb|ACP53455.1| DNA polymerase III beta chain [Rickettsia africae ESF-5]
          Length = 379

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLLAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ LS ++I     E+ SM
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTSM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKMFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDV-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|228915297|ref|ZP_04078890.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228844240|gb|EEM89298.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 380

 Score =  270 bits (691), Expect = 2e-70,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 5   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 65  IDDEQITTILQVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 178

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 179 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++V   +  ++I F+ +++L+ +  I      ++ V  
Sbjct: 297 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 352 SFSGSMRPILIEAGTQSA---------AIHLISPVR 378


>gi|157825704|ref|YP_001493424.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford]
 gi|157799662|gb|ABV74916.1| DNA polymerase III subunit beta [Rickettsia akari str. Hartford]
          Length = 379

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 206/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G +TVS   L DIVRKL D   I     +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGELTVSTKTLNDIVRKLPDSELILT---DLGTTGLEIKGKNCKFNLFTLPVSSFPTM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ LS ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEMLLSSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLVIGFNPQYLEDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|327463835|gb|EGF10151.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1057]
          Length = 378

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIVGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S     ++V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|42781777|ref|NP_979024.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 10987]
 gi|42737700|gb|AAS41632.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
          Length = 376

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 97/396 (24%), Positives = 177/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + AN   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAFIPILSGIKITANQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  MDDEQITTTLQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP SEFP+  + E     ++ +  L +  ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPASEFPNVPQIEDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDYN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETQISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN  ++IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++  + E  + I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIKVSSNASQIGKIYETQQVDAIHGEKQLHISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374


>gi|19745203|ref|NP_606339.1| DNA polymerase III subunit beta [Streptococcus pyogenes MGAS8232]
 gi|19747292|gb|AAL96838.1| beta subunit of DNA polymerase III [Streptococcus pyogenes
           MGAS8232]
          Length = 378

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNATKRAISTKNAIPILSSIKIKVTPTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|196032677|ref|ZP_03100091.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|218903815|ref|YP_002451649.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228927740|ref|ZP_04090788.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
 gi|228946302|ref|ZP_04108629.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|229122239|ref|ZP_04251453.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
 gi|195995428|gb|EDX59382.1| DNA polymerase III, beta subunit [Bacillus cereus W]
 gi|218538894|gb|ACK91292.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|228661088|gb|EEL16714.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
 gi|228813352|gb|EEM59646.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228831803|gb|EEM77392.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pondicheriensis BGSC 4BA1]
          Length = 376

 Score =  270 bits (691), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILQVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++V   E  ++I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGEKQLNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374


>gi|229011945|ref|ZP_04169125.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048]
 gi|228749359|gb|EEL99204.1| DNA polymerase III, beta subunit [Bacillus mycoides DSM 2048]
          Length = 376

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/396 (24%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I  +  KL 
Sbjct: 117 LSANEFPNVPFLDSHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E+ I +      + IVP   + E+L+++SS  + V + LSES I    
Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMSSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  ++  + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|324326663|gb|ADY21923.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 376

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 94/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIKKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILKVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDYN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++V   +  ++I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374


>gi|322375217|ref|ZP_08049731.1| DNA polymerase III, beta subunit [Streptococcus sp. C300]
 gi|321280717|gb|EFX57756.1| DNA polymerase III, beta subunit [Streptococcus sp. C300]
          Length = 378

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + +    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLESSFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA +T+E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISASTPLVLETKLLKKIINETAFAASTQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKN-GDDFDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVVNLRQSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S     ++V     S
Sbjct: 298 VVSAHVHSPEVGKVNEEIDTEQVTGDDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|222099398|ref|YP_002533966.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359]
 gi|221571788|gb|ACM22600.1| DNA polymerase III, beta subunit [Thermotoga neapolitana DSM 4359]
          Length = 366

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/387 (24%), Positives = 188/387 (48%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI     ++ + +  A + + +K+  PV    L +  +G   I A+  E  +  ++  A
Sbjct: 1   MKIVTTTLELKDKVTIASKALAKKSVKPVLAGFLFEVKNGNFFICATDLETGVKASVNCA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +       V   +L  +V+ L D       +    G  + I+ G + F + + P  EFP
Sbjct: 61  EISGDARFVVPGDVLQKLVKVLPDETTELSLE----GDNLVITSGSTVFRITTMPADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   SFE+ +S+L+ +VE+  FA AT+E    LNG+F+ +++  L+L  VA+DG 
Sbjct: 117 DIAPAESGISFEIDTSLLEEMVEKVIFAAATDEFMRNLNGVFWELHKGFLRL--VASDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIESLSMS 238
           RLA+AE     +  +  + ++  K++ E+  +L++     V V     R+ L    +   
Sbjct: 175 RLALAEE--QIENEEETNFLLSLKSMKEVQNVLNNTTEPTVVVRYDGRRVSLTTNDVETV 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R++D EFP+Y+ VIP +   ++ V+  +L++++ RV +++S   ++VK  +  + + + 
Sbjct: 233 MRVVDAEFPDYRRVIPETFKTKVVVSKKSLQESLKRVMVIASKGSESVKFEIEENTMRLV 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +PD G+ I+ + V      + I FN K++++ +  I +     +E+      S S   
Sbjct: 293 SRSPDYGEVIDELEVQKEGEDLIIAFNPKFIVDALRRIET-----EELEMNFVDSTSPCQ 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D              Y++MP+R+
Sbjct: 348 INPLD---------ISGYIYIVMPIRL 365


>gi|292557466|gb|ADE30467.1| DNA polymerase III, beta subunit [Streptococcus suis GZ1]
          Length = 378

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I    
Sbjct: 3   QFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSHGQISIEHFISIQD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A    ++V  + D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK---QIVLTSGKSEITLKGKE 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + VLK  +  T FA +T+E R  L G+ F + E    L  V
Sbjct: 120 AEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        ++++P +++ E   + +    +V+V  S ++I    E 
Sbjct: 179 ATDSHRMSQRKLVLDTS-GDDFNVVIPSRSLREFTAVFTDDIETVEVFFSNNQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP         +  NLR +++R  ++S+  +   VKL ++++
Sbjct: 238 ISFYTRLLEGTYPDTDRLIPTEFKTTAIFDTANLRHSMERARLLSNATQNGTVKLEIANN 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++ V  +   + I FN  YL+E +   +S     ++V     S
Sbjct: 298 VVSAHVNSPEVGRVNEELDTVEVSGEDLVISFNPTYLIEALKATTS-----EQVKISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   ++          +   ++ P+R
Sbjct: 353 SVRPFTLIPNNE--------GEDFIQLVTPVR 376


>gi|327490339|gb|EGF22126.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           sanguinis SK1058]
          Length = 378

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  ++ I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISHKNAIPILSTVKIDVTKEGITLIGSNGQVSIENFISTQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V+  GSI + A    ++V  L D   I  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVNSTGSILLEATFFINVVSSLPD--IILDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETKILKDVINETAFAASVQESRPILTGVHFVLTDNR-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + + +  +V+V  + ++I    E+
Sbjct: 179 ATDSHRMSQKKITLEKN-GDNFDVVIPSRSLREFTAVFTDEIETVEVFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      L  N ++LR A++R  ++S+  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSILTFNTSDLRAAMERARLLSNATQNGTVKLEIIGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++        + I FN  YL++ +  I S++     V     S
Sbjct: 298 IVSAHVNSPEVGRVNEEIDTESVTGEDLTISFNPTYLIDALKAIDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S     +   +           N   ++ P+R
Sbjct: 353 SVRPFTLVPSED--------TENFIQLITPVR 376


>gi|325854307|ref|ZP_08171506.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A]
 gi|327313529|ref|YP_004328966.1| DNA polymerase III subunit beta [Prevotella denticola F0289]
 gi|325484101|gb|EGC87035.1| DNA polymerase III, beta subunit [Prevotella denticola CRIS 18C-A]
 gi|326944906|gb|AEA20791.1| DNA polymerase III, beta subunit [Prevotella denticola F0289]
          Length = 374

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 178/386 (46%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +  + +   L    R+I  KN++P+    L + +DG L I AS  E  + G +   
Sbjct: 1   MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEVHDGQLTITASDSENIMRGTLNLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G   V+ H + D V++L +          E+   V   +G  NF +      E+P
Sbjct: 61  NCEGEGDFAVNNHTILDAVKELPEQPLALNVNMEEMKIYVTYQNGSYNFPILG--ADEYP 118

Query: 120 ST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                 E   +  + +  L + + R+ FA A +E+R  +NGI+F + E+   L  VA+DG
Sbjct: 119 KVQPMSETATTVTIGAEKLSDSLTRSLFATAQDELRPVMNGIYFDLKEDG--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     + ++P+K    +  +LS     V +   +    ++    +++
Sbjct: 177 HKL-VRNRNFSVKSETPAAFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLA 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G++PNY +VIP  N  ++ ++  +L  A+ RV   +S   Q ++  +SS  L + 
Sbjct: 236 CRLIEGKYPNYNSVIPLDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSSGLLELN 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y   PM I F    +L+I++N+ S     D+VV +L   + + 
Sbjct: 296 AEDIDFSTSAKESIVCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 VIVPA------VQPENEDVLMLIMPM 370


>gi|238650892|ref|YP_002916748.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic]
 gi|238624990|gb|ACR47696.1| DNA polymerase III subunit beta [Rickettsia peacockii str. Rustic]
          Length = 379

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 113/397 (28%), Positives = 204/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGECTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   II+P+K+  EIL+I+      +  +++ L+ ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGIILPQKSAEEILKIVKDPKNINEDIEILLNSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSTFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDVSAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|88192167|pdb|2AVT|A Chain A, Crystal Structure Of The Beta Subunit From Dna Polymerase
           Of Streptococcus Pyogenes
 gi|88192168|pdb|2AVT|B Chain B, Crystal Structure Of The Beta Subunit From Dna Polymerase
           Of Streptococcus Pyogenes
          Length = 378

 Score =  270 bits (690), Expect = 3e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSADFM-VVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|302345412|ref|YP_003813765.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC
           25845]
 gi|302150115|gb|ADK96377.1| DNA polymerase III, beta subunit [Prevotella melaninogenica ATCC
           25845]
          Length = 374

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 96/386 (24%), Positives = 179/386 (46%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +  + +   L    R+I  KN++P+    L + +DG L I AS  E  + G +   
Sbjct: 1   MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEVHDGQLIITASDSENVMRGTLNLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G+  V+ H + D V++L +         +E+   V   +G  NF +      E+P
Sbjct: 61  SCEGEGNFAVNNHTILDAVKELPEQPLTLDVNLDEMKIYVTYQNGSYNFPILG--ADEYP 118

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +   +   +  L +  L + + R+ FA A +E+R  +NG++F + E+   L  VA+DG
Sbjct: 119 KAQSVSDNATTITLQAEKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDG--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V       +     S ++P+K    +  +LS     V +   E    ++    +++
Sbjct: 177 HKL-VRNKIFSIKSDSPASFVLPKKPASLLKNVLSKDGGDVIIRFDERSAEISFAEGNLA 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G++PNY +VIP  N  ++ ++  +L  A+ RV   +S   Q ++  +S   L + 
Sbjct: 236 CRLIEGKYPNYNSVIPQDNPNQVTIDRKSLIGALRRVLPFASDSSQLIRFHVSVGLLELN 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y   PM I F    +L+I++N+ S     D+VV +L   + + 
Sbjct: 296 AEDIDFATSAKESVTCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 VIVP------GTQPENEDILMLIMPM 370


>gi|225869489|ref|YP_002745436.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi
           4047]
 gi|225698893|emb|CAW91874.1| DNA polymerase III, beta chain [Streptococcus equi subsp. equi
           4047]
          Length = 378

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S 
Sbjct: 3   QFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A    +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            S++P  +E        L + +LK+++  T FA + +E R  L G+   +++      AV
Sbjct: 120 VSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKN-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S++    + 
Sbjct: 179 ATDSHRMSQRLITLEKTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E   N  +LR A++R  ++S+  +   VKL + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIEAN 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++   V++P++GK  E ++V       + I FN  YL+E +  I S     + V     S
Sbjct: 298 RISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D +         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376


>gi|229017981|ref|ZP_04174857.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
 gi|229024202|ref|ZP_04180665.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|228737094|gb|EEL87626.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|228743250|gb|EEL93374.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
          Length = 376

 Score =  270 bits (690), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 98/396 (24%), Positives = 180/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  KN IP+   + + AN   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKNLIPILSGIKITANPSGITLIASNSNIFIEKFIPSS 60

Query: 61  VD--------VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEGVQITTIVKAGSIVVPAKYFIEIIKKMPSDILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I  +  KL 
Sbjct: 117 FSANEFPNVPFIDEHAEIQVETEQLIEVFKQTVFAAAKNESRPVLTGVHFVI--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E+ I +      + IVP   + E+L++++S  + V + LSES I    
Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKQILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  ++    E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DESTIQISSNASQIGKISETQQIDTILGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPIVIEAGEQSA---------AVYLISPVR 374


>gi|241895508|ref|ZP_04782804.1| DNA-directed DNA polymerase III, beta chain [Weissella
           paramesenteroides ATCC 33313]
 gi|241871254|gb|EER75005.1| DNA-directed DNA polymerase III, beta chain [Weissella
           paramesenteroides ATCC 33313]
          Length = 376

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 80/394 (20%), Positives = 180/394 (45%), Gaps = 30/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+ R+  ++ + +  R I  + ++ +   + L  ++  L +  S  +I I   IPA+
Sbjct: 1   MEFTINRAAFIKAMNNVNRAISSRTSMTILKGIKLVLDETGLILTGSNTDISIEILIPAN 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   G+I + A    +IV++L      +F   N  G +  I+  ++ F +   
Sbjct: 61  DDEAKLQIMEPGAIVLPATFFSNIVKRLPGE---TFKLTNASGLQTKITSENAEFDINGQ 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             + +P   E E      L++  L  ++ +T  A++ +  +  L G+ F +   +L   A
Sbjct: 118 DANNYPHLPEVEVRNDLTLSADTLNEVIGQTVIAVSKQLSQPILTGVHFILASGNLT--A 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRLA   V           IIVP  ++ ++  +L  +  +V V ++E+++   + 
Sbjct: 176 VATDRHRLAQRSVAFD-DSDVNADIIVPGTSLTQLQAML-DEVENVDVRVAENQVIFQLG 233

Query: 234 -SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
            + +   RL++G +P+   +IP      L +N  +L Q ++R +++S   R   ++ +++
Sbjct: 234 ENTTFYSRLLEGNYPDASRLIPTEKRTTLTINARDLLQTIERAALLSHEGRSNVIQFAIT 293

Query: 292 SDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S+K  ++ ++P++G+  E +         + I FN  Y+ E + +       D+++    
Sbjct: 294 SEKSLISSNSPEVGRVEEQIFAAETAGDDLTISFNPDYMREALRSFG-----DEQIQIGF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            ++     +   + ++        N   ++ P+R
Sbjct: 349 KTALDPFTLVPTNNET--------NFIQLITPVR 374


>gi|261338545|ref|ZP_05966429.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM
           20093]
 gi|270276566|gb|EFA22420.1| DNA polymerase III, beta subunit [Bifidobacterium gallicum DSM
           20093]
          Length = 374

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 167/388 (43%), Gaps = 21/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  + + +      R+I+ +   P+   V L+A DG L + A   EI     I A 
Sbjct: 1   MKVEVNSTSLADAAAWTTRVIDSRPNSPILAGVKLEAKDGALFLSAFNYEISARDRIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L         +    G+ + I+ G S F +Q  PESE+P 
Sbjct: 61  VDEPGAVVVLGKLLTDISKMLPSEKTYLATE----GSTLRITSGKSTFTMQLMPESEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +          +      V +   A++ +  R  L  +    + E + L   +TD +R
Sbjct: 117 LPQLPPQIGQV-DAETFAQAVAQAVVAVSHDGTRQVLTAVRMQCDGERVTLS--STDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESR---IHLNIESLS 236
           L+ A          + +  + R   + +I R L  +  +V +S   S    + +      
Sbjct: 174 LSRALFHWTPDDNDINATALIRGTHLRDISRSL-DEHQNVVISFDPSNPTLLGIQNAGRI 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +V+LIDGEFP    +          V    L  A+ RVS+++  R + +++  + +++ 
Sbjct: 233 STVQLIDGEFPAVDRLYADEYPIHAVVERQQLISAIKRVSLVA-GRNEPIRMIFTGEEVT 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           MT    D  +A E ++V  +   + + FN  YL+E I  I      +  V  ++ ++   
Sbjct: 292 MTAGAADESQAREILDVDLDGEDITVAFNPNYLIEGISAI-----TEPYVRMKMTTAVKP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V     D   +++ D  +N  Y+L+PMR
Sbjct: 347 VEF---DGQQEHDSDESMNYRYLLVPMR 371


>gi|313889501|ref|ZP_07823147.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN
           20026]
 gi|313122113|gb|EFR45206.1| DNA polymerase III, beta subunit [Streptococcus pseudoporcinus SPIN
           20026]
          Length = 377

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 172/392 (43%), Gaps = 28/392 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ RS  ++ L    R I  KN IPV   + ++ +   + +  S  +I I   IP S 
Sbjct: 3   QFSINRSLFIQALNATKRAISSKNAIPVLSTIKIEVSQSDITLTGSNGQISIENIIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D        E+    +V ++ G S   L+   
Sbjct: 63  ENAGLLISSTGAILLEASFFINIISSLPDLTLDFKEIEHH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA +T+E R  L G+   +  +     AV
Sbjct: 120 VEQYPRLQEVSTDNPLILETKLLKSIISETAFAASTQESRPILTGVHLTLK-DHKAFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +++P +++ E   + +    +V++  S S+I    + 
Sbjct: 179 ATDSHRMSQRLLTLEKSATD-FDVVIPSRSLREFTSVFTDDIETVEIFFSPSQILFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E   N   LR A++R  ++S+  +   VKL ++  
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMNQFETEAVFNTQALRHAMERAYLISNATQNGTVKLEITET 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +  V      + I FN  YL+E +  +      ++ V  R  S
Sbjct: 298 SVTAHVNSPEVGKVNEELETVEKTGSDLTISFNPTYLIEALKALK-----NETVRIRFVS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++             ++ P+R
Sbjct: 353 PVRPFTLTSDDEE---------GFIQLITPVR 375


>gi|118478062|ref|YP_895213.1| DNA polymerase III subunit beta [Bacillus thuringiensis str. Al
           Hakam]
 gi|196043398|ref|ZP_03110636.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|225864666|ref|YP_002750044.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|229184910|ref|ZP_04312101.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1]
 gi|118417287|gb|ABK85706.1| DNA polymerase III beta subunit family protein [Bacillus
           thuringiensis str. Al Hakam]
 gi|196025707|gb|EDX64376.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|225789614|gb|ACO29831.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB102]
 gi|228598563|gb|EEK56192.1| DNA polymerase III, beta subunit [Bacillus cereus BGSC 6E1]
          Length = 376

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLINSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++V   +  ++I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374


>gi|291539807|emb|CBL12918.1| DNA polymerase III, beta subunit [Roseburia intestinalis XB6B4]
          Length = 344

 Score =  269 bits (689), Expect = 4e-70,   Method: Composition-based stats.
 Identities = 72/359 (20%), Positives = 166/359 (46%), Gaps = 24/359 (6%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
           + +   +L+ A+   +++ A+  E+ I   I   +   G I + A +  +IVRKL D   
Sbjct: 1   MAILECILIDASANEIKLTANDMELGIETKIEGEIAERGVIALDAKIFSEIVRKLPDSDV 60

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF 146
                E +   +  I+   + F +      +F      E      ++   LK ++ +T F
Sbjct: 61  ---TIETDASFKTTITCEKAKFNIVGKSGDDFSYIPYIERNEPIVMSQFTLKEVIRQTIF 117

Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206
           ++A  +    + G  F I E DLK+  V+ DGHR+++  +++    +    ++VP K + 
Sbjct: 118 SIADNDNNKLMTGELFEIEENDLKV--VSLDGHRISIRNIELKNNYS-HKKVVVPGKTLQ 174

Query: 207 EILRILSSK-DSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
           E+ +IL    +  V + L+++ I    E+ ++  RLI+GE+   + ++    + ++++N 
Sbjct: 175 EVSKILPGSAEDEVCIFLTDNHIVFEFENTTVVSRLIEGEYFKIEQMLSSDYETKVKINK 234

Query: 266 TNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
             L   +DR +++      + + ++++   + + + N  +G   E +++      + I F
Sbjct: 235 RELLDCIDRATLLVKEGDKKPIIMNITDGTMELKI-NSFIGSMNEDIDIAKEGKDILIGF 293

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           N K+ ++ +  I      ++EV   + +  +  FI          KD++    Y+++P+
Sbjct: 294 NPKFFIDALRVID-----EEEVTLYMVNPKAPCFI----------KDDEGTFIYLILPV 337


>gi|81251105|gb|ABB69900.1| DNA polymerase III beta chain [Nitrosomonas sp. OZK11]
          Length = 373

 Score =  269 bits (689), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 113/393 (28%), Positives = 194/393 (49%), Gaps = 30/393 (7%)

Query: 1   MKITV-ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG--AI 57
           MK+T+  R  + + L     I+ER++T+P+  + L++  +G L +  +  EIE     +I
Sbjct: 1   MKLTITNRDLLFKPLQTVSGIVERRHTLPILSNTLIEIRNGKLTLVTTDLEIEAEAISSI 60

Query: 58  PASVDVCGS--ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           P  ++  G+   TVS   L DI+R L     I   +       + I  G S F LQ  P 
Sbjct: 61  P-ELENQGTLQTTVSVKKLQDILRALPANTAIELTRSE---NRLQIVSGKSRFSLQLLPA 116

Query: 116 SEFPST--KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
            +FP      E    S+ L   V K  ++R   AMA +++RYYLNG+   I  ED K+  
Sbjct: 117 EDFPRMIRDNEPCSMSYTLPQRVFKKQLQRVSHAMAQQDLRYYLNGLLLLI--EDNKMTL 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
            ATD HRL +  + +     K  + I+PRK V E++R L   D  V++ +   ++     
Sbjct: 175 AATDTHRLGITSIALKGNFEKSET-IIPRKTVLELIRQLEDSDRPVEIEIYPKKVCFRFP 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR--IQAVKLSLS 291
              +  ++I G+F +++  IP ++     VN  +   A+ R +I+SS     + V L+++
Sbjct: 234 DAVLISKVISGKFLDFRRAIPQTSVFRFDVNRLDFFHALQRTAIISSSNDLFRNVHLNIT 293

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           S KL ++  N +  +A E + + Y++  +D  FN  YL+E+++N+ S     ++V    +
Sbjct: 294 SGKLNISAKNKEQEEAQEEIEIVYSDETIDTSFNIVYLMEVLNNLDS-----EQVTCSFE 348

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S  S++ I   D +            +VLMPMR
Sbjct: 349 SMQSAILITLPDDEQ---------FKHVLMPMR 372


>gi|229167522|ref|ZP_04295260.1| DNA polymerase III, beta subunit [Bacillus cereus AH621]
 gi|228616084|gb|EEK73171.1| DNA polymerase III, beta subunit [Bacillus cereus AH621]
          Length = 376

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I  +  KL 
Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E+ I +      + IVP   + E+L++++S  + V + LSES I    
Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMNSNANLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  ++  + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|319936679|ref|ZP_08011092.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1]
 gi|319808236|gb|EFW04801.1| DNA polymerase III subunit beta [Coprobacillus sp. 29_1]
          Length = 367

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 94/387 (24%), Positives = 190/387 (49%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   ++R  +L  L    R +  K+ +PV   +     D  L +  S  +I I  +I  +
Sbjct: 1   MNFKIKRLALLNALAKVSRAVSMKSPLPVLTGIKFDLKDNELILTGSDSDITIQTSIKEN 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ++    GS+ +S+  + +I++K+       +  +   GT   I   +S F L      ++
Sbjct: 61  IEIIQTGSVVLSSRYILEIIKKIDSEFVHIYIVD---GTLTRIEGANSKFDLNGTSYIDY 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +     ++ S+ LK  +E+T FA + +E R  L G+ F    +D  L  +ATD 
Sbjct: 118 PRIDLNKSGVHLQMKSTDLKQAIEQTSFATSEKETRPVLTGVNF--KAKDHVLECIATDS 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA   + I + ++   +II+P+K++ EI RI+  KD  + + +S+ ++    +S+ + 
Sbjct: 176 YRLAKRILTIDSDVS--FNIIIPKKSLIEISRIIE-KDEFIDLYVSDRKVLFIFDSVLIQ 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG +P+   +IP  ++  + V+  +L  ++DR S++S+ +   +KLS+S D + ++
Sbjct: 233 TRLIDGSYPDTSRLIPHEHNYSMSVDSVSLLNSIDRASLLSNEQTNIIKLSMSEDHVMLS 292

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + ++G   E+++  +Y    + I F+ KYL + I +I+      ++V           
Sbjct: 293 SYSQEIGSVEENLSKAFYKGDELSISFSAKYLNDAIKSING-----EKVKVLFTGEMKPF 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I   +KD         +   +++P+R
Sbjct: 348 IIMDFEKD---------DIIQLVLPVR 365


>gi|319788989|ref|YP_004150622.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1]
 gi|317113491|gb|ADU95981.1| DNA polymerase III, beta subunit [Thermovibrio ammonificans HB-1]
          Length = 364

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 184/393 (46%), Gaps = 37/393 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V ++ I + +  A    +++  +P+  +VLL+A D LL + A+  EI I+  +  S
Sbjct: 1   MKIKVNKALIRDAVKVAASAADKRGNVPILSNVLLEAEDNLLRLVATNLEIGISTVVDCS 60

Query: 61  VDVCGSITVS----AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           V+ CG  TV+    A L   I      G ++S    +   +++ +   +S F L + P  
Sbjct: 61  VEECGKTTVNAGKAAKLFSSIT-----GEEVSLSAGD---SKLVVETANSRFSLATLPPE 112

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP   E    +   L S  +   + +  +A + +E RY L G+ F     +  L AVAT
Sbjct: 113 EFPEV-ELPQTFPVTLPSQEIDRAIRKVAYAASKDEARYILTGVLF--RSVNGALHAVAT 169

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+ E+   AQ       I+P+K++ E+ ++L   +  V +  + ++++ N     
Sbjct: 170 DGHRLALYEISAAAQGVNS---IIPKKSLSELKKLLRESEE-VGIVETGNKLYFNTGDTV 225

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDKL 295
           M   LI+GE+P+Y  VIP  N K L  +   L  A+  V+ I     ++    +LS  KL
Sbjct: 226 MWTSLIEGEYPDYTAVIPEGNSKVLTADREELLSALKEVAVIFDKEEVRGAVFTLSDGKL 285

Query: 296 CMTVDNPD---MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +T    +     +A  ++ V Y+     I FN  +L+E + +        + +   ++ 
Sbjct: 286 TITARKIEGDAAEEAEVTIPVDYSGGEFQIGFNIVHLIESVGSFDG-----ETLKIAMEE 340

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + V I   ++    N         V+MPM++
Sbjct: 341 PVTPVLITSPEEPQLTN---------VIMPMKV 364


>gi|16885215|gb|AAF98349.2| DNA polymerase III beta subunit [Streptococcus pyogenes]
          Length = 378

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A +  +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSADLM-VVLPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTEFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEITQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D++         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDEEE--------SFIQLITPVR 376


>gi|268610502|ref|ZP_06144229.1| DNA polymerase III subunit beta [Ruminococcus flavefaciens FD-1]
          Length = 367

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 174/387 (44%), Gaps = 24/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++++ E + +  R + +K+TIP    + ++ + G +E+     E+ I   I AS
Sbjct: 1   MKFICNKNELSEAVTNVSRAVSQKSTIPALEGIKVKVSSGTVELTGYNLEMGIRTTISAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G   VSA L  +  R++          E+ +   +NIS   +     +   SEFP 
Sbjct: 61  TEGEGEFVVSARLFSEFTRRMSGDEVTFDIDESMV---INISCSATECSFPAMSASEFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   SF +  S LK+++  T +A +  E +  L G  F I  E+     VA DG R
Sbjct: 118 LPMVDQGRSFSVKQSTLKSMINMTSYAASMNESKPVLTGELFDI--ENGSFNMVAIDGFR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+     +    +    +VP+KA+ E+  ++    D    +  ++  I   I S+ +  
Sbjct: 176 LAIRGE--MTDCQEKYHFVVPKKALLEVSTLIKDDADKPCNIFTNDRHIIFEIGSVFVIS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           RL++G F NY+  IP     E+ VN  +   +++R S++   + +  ++  + +  + ++
Sbjct: 234 RLLEGAFHNYKLSIPSDFKTEVIVNKKDFVTSLERCSLLIDDKNKSPIRCEVGNGVVKIS 293

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +GK  ++++   +   + I FN K +LE +     D+     V  R + +   + 
Sbjct: 294 CRTG-IGKINDAISADISGETVTIGFNNKLILEALRAAEGDK-----VRIRFNGAMKVIE 347

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + +S           +++MP+++
Sbjct: 348 ILPLEGES---------FIFLVMPIQL 365


>gi|322386431|ref|ZP_08060060.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           cristatus ATCC 51100]
 gi|321269517|gb|EFX52448.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           cristatus ATCC 51100]
          Length = 378

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISTKNAIPILSTVKIDVTKEGITLIGSNGQISIENFISVQN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A+   +++  L D   +  FKE E   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVTSPGSILLEANFFINVISSLPD--IVLDFKEIEQK-QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + VLKN++  T FA +T+E R  L G+ F + +    L  V
Sbjct: 120 ADQYPRIQEVSTSNPLVLETKVLKNIINETAFAASTQESRPILTGVHFVLTDNQ-SLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +  +      +++P +++ E   + + +  +V+V  + +++    E+
Sbjct: 179 ATDSHRMSQKKITLDKK-GDDFDVVIPSRSLREFTAVFTDEIETVEVFFANNQLLFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      +  N  NLR A++R  ++S+  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSSVVTFNTNNLRHAMERSRLLSNATQNGTVKLEIVKG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++G+  E ++    +   + I FN  YL+E +  + S++     V     S
Sbjct: 298 IVSAHVHSPEVGRVNEEIDTESVSGEDLTISFNPTYLIEALKAVDSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   +           N   ++ P+R
Sbjct: 353 AVRPFTLVPSED--------AENFIQLITPVR 376


>gi|304439077|ref|ZP_07398996.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
 gi|304372436|gb|EFM26023.1| DNA-directed DNA polymerase III beta subunit [Peptoniphilus
           duerdenii ATCC BAA-1640]
          Length = 358

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/386 (25%), Positives = 187/386 (48%), Gaps = 31/386 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    + ++ + +  A R +  + T+ +   +LL A D  L +  +  ++ I   +   
Sbjct: 1   MKFRASKQELSKHIQIAQRAVSSRTTMQILEGLLLIAKDNTLTLIGTDTDLTIISTMACI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + V++ L  DI+RKL+D       K+      +NI   +S+F +      EFP 
Sbjct: 61  VEEEGEVVVNSRLFGDIIRKLEDSFVDITLKD----LNLNIVCKNSDFNINCQSSKEFPR 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   SF +    LK  + +T FA++ EE R    G+F    E+   +  VA DG R
Sbjct: 117 NLNFEDKGSFTMKEEDLKEAIRKTTFAVSIEETRKIFTGVFMDCKED---ISFVALDGFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A   + I  + ++    I+P   + E+ +IL S D  VK+++ E +I     +  +   
Sbjct: 174 MARERIAISTEPSES---IIPANHLNELQKILGSGD--VKITIGERKILFETNNTKIYST 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTV 299
           L  GE+ NY+++I  S+  E+++N    + +++R S+++   R   +KL+++ +++ ++ 
Sbjct: 229 LYSGEYFNYKDLIRKSHTTEVKINREMFQTSIERASLLAKEERSNLIKLNIADNRVKISS 288

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N ++G   E +    N   +DI FN KYLL+ I  +      +DE+V     S + + I
Sbjct: 289 -NTEIGNVEEVLECEINGPGLDIAFNSKYLLDGIKIMD-----EDEIVLNFTDSINPLII 342

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                       N+ +  Y+++P+R+
Sbjct: 343 ------------NEKSYTYLVLPVRL 356


>gi|223983628|ref|ZP_03633806.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM
           12042]
 gi|223964395|gb|EEF68729.1| hypothetical protein HOLDEFILI_01087 [Holdemania filiformis DSM
           12042]
          Length = 373

 Score =  269 bits (688), Expect = 5e-70,   Method: Composition-based stats.
 Identities = 97/392 (24%), Positives = 182/392 (46%), Gaps = 30/392 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + +      L    R I   + +P    + ++ N   + +  S  +I I   +  S
Sbjct: 1   MNFKISKRVFYSALNTVSRAISSNSPLPALSGIKIEVNQDSIVLTGSDSDISIQTTLKGS 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  V   GSI + A  + +IVRK+ D  +I     +  G+   IS   + F +   
Sbjct: 61  DEEINLIVKETGSIVIEAKYILEIVRKI-DADEIELEIVD--GSLTKISGMSAEFRINGM 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P+         FE+ + VL  ++ +T FA +  E R  L G+    + +  +L  
Sbjct: 118 RALDYPAIDFTRPGQQFEMDADVLLKVISQTTFATSDRETRPVLTGVNMKCSGK--RLEC 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD +RLA   VD+ ++     +I +P K++ E+ + ++ +DSSV +++S+ +    I 
Sbjct: 176 VATDSYRLARKIVDLTSE--NNFNITIPAKSLNEVSKTIA-QDSSVLIAVSDKKAQFWIG 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
              +  RLIDG +P    +IP     EL V+  ++  A+DR S + +  I  VKLS +S+
Sbjct: 233 ETVIQTRLIDGAYPETARLIPTEFAHELTVDSRDMLNAIDRASFIKNEGISIVKLSANSE 292

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++ ++  + ++G ++E++N+  Y   P++I F+ KY+ E I  +S+       +      
Sbjct: 293 EVVISSKSQEVGSSVENLNILTYEGNPLEISFSGKYVFEAIRVLSATT-----IKILFSG 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 IR  D DS            +++P+R
Sbjct: 348 EMKPFVIRNTDDDSI---------LQLVLPVR 370


>gi|195977158|ref|YP_002122402.1| DNA polymerase III subunit beta [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
 gi|195973863|gb|ACG61389.1| DNA polymerase III beta subunit [Streptococcus equi subsp.
           zooepidemicus MGCS10565]
          Length = 378

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S 
Sbjct: 3   QFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A    +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            S++P  +E        L + +LK+++  T FA + +E R  L G+   +++      AV
Sbjct: 120 VSQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKD-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S++    + 
Sbjct: 179 ATDSHRMSQRLITLEKTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E   N  +LR A++R  ++S+  +   VKL + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMKQFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIEAN 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++   V++P++GK  E ++V       + I FN  YL+E +  I S     + V     S
Sbjct: 298 RISAHVNSPEVGKVNEDLDVVSQAGNDLTISFNPTYLIEALKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D +         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376


>gi|289177771|gb|ADC85017.1| DNA polymerase III, beta chain [Bifidobacterium animalis subsp.
           lactis BB-12]
          Length = 395

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/389 (23%), Positives = 167/389 (42%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +     +I+ +   P+   V L+A DG +++ A   EI     I A 
Sbjct: 22  MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 81

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L          E    T + I+ G + F LQ  PESE+P 
Sbjct: 82  VDESGTVVVLGKLLADISKVLPAEKTYLSANE----TTMTITSGPATFTLQLMPESEYPD 137

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +          +      V +   A+A +E R  L G+      E++ L   +TD  R
Sbjct: 138 LPQLPPQIGQV-DAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 194

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESR---IHLNIESL 235
           L  A        A + +  + R +   +++I  S D   +V + L  +    I +     
Sbjct: 195 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 252

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +V+LIDGEFP    +   S   +  +   +L  A  RVS+++  R   +++  +  +L
Sbjct: 253 ISTVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVA-ERNAPIRMVFTDQQL 311

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T    D   A E++ +  +   + + FN  YL E +  IS     +  +  ++ ++  
Sbjct: 312 TLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAVK 366

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            V   G+  +   + +  ++  Y+L+PMR
Sbjct: 367 PVEFNGQQDE---DGEESMSYRYLLVPMR 392


>gi|227498787|ref|ZP_03928927.1| DNA polymerase III [Acidaminococcus sp. D21]
 gi|226904239|gb|EEH90157.1| DNA polymerase III [Acidaminococcus sp. D21]
          Length = 372

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 173/388 (44%), Gaps = 21/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ + E + + + +    + I      P+   + +  N   LE+ A      +   +  +
Sbjct: 1   MQFSCESAQLAKAVNTVKKAISSSPNAPIFSGIHMSLNGNTLELVAMDVNFSMKKVLEVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G I V A  L D++ K      I    + E   E+ ++     +++      ++PS
Sbjct: 61  GNEDGVILVPAQSLGDLLAKF--STDILTLTQKEGTQELTLTSETGTYHIPLIGSDDYPS 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      L   +L  L+ +T +A +T+E R    G+F    ++   +  V T+ HR
Sbjct: 119 FPEFEGERILTLPEDLLGQLIRQTVYACSTDESRPLFTGVFME--KKGQHITCVGTNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           LA+   D         S+++P + + EI   L+ +    V +   +S+I + + SLS+  
Sbjct: 177 LAIKSADPETADDSEYSLLIPARVLKEIANNLTGELPEDVAIIQKDSKILVRMGSLSLVS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G FP+Y   IP S      +N  +L +A+ RVS+ +      ++L++ +D++ ++ 
Sbjct: 237 SLIEGTFPDYSRPIPPSFKNRSVLNRQDLERAIQRVSLFAQGEYNIIRLNIEADRVILSS 296

Query: 300 DNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              D G+ +E M         P++I FN KYL++   NIS      D+VV   +SS S  
Sbjct: 297 AASDRGQGMEIMEGVTTGEELPLNIAFNSKYLMDFCKNISC-----DQVVLETNSSLSPA 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D  S           Y++ P+R+
Sbjct: 352 RMMPVDDPS---------YTYIITPVRV 370


>gi|21234115|ref|NP_639692.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)]
 gi|13620601|emb|CAC36640.1| putative DNA-polymerase III, beta chain [Streptomyces coelicolor
           A3(2)]
          Length = 372

 Score =  269 bits (688), Expect = 6e-70,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 168/389 (43%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T++ +     + +A R +  +  +P+   +LL A+   L I A   EI       A+
Sbjct: 1   MKLTIDHTAFAAAVSYAVRSLPARPPVPILAGLLLDASSSGLRISAFDYEISADTTAAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   VS  LL DIV  ++    +        G  + +  G + F L + P  E+P+
Sbjct: 61  VTETGRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTLPLDEYPA 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +  L        V +   A++ EE    L GI  H + E   L   ATD +R
Sbjct: 116 LPE-PGTITGTLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTLYATDRYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESRIHLNIESLSM 237
            AV  +          S ++P +A+ +  +  +  D++V ++L         L  +  + 
Sbjct: 175 FAVRTLSWKDANLPDTSAVIPGRALSDAAKATAD-DTTVDLALPTGDAGLFTLRSDLTTT 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK-LC 296
           ++R ++GE P Y  + P        V    L+ A  RV+++S+ +   +KL+ ++D  L 
Sbjct: 234 AIRALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTADSTLV 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     D  +A++S++       + I FN  +LL+ ++ +     + + V F   S    
Sbjct: 294 LEGGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNAL-----MAESVQFDFISPTKP 348

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +R  D D +  +       Y+LMP+R+
Sbjct: 349 AVLRAHDGDDQALR-------YLLMPIRL 370


>gi|228933970|ref|ZP_04096813.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
 gi|228825666|gb|EEM71456.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           andalousiensis BGSC 4AW1]
          Length = 380

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 5   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 64

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 65  IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 120

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R+ L G+   +  +  KL 
Sbjct: 121 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIEL--DHNKLI 178

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 179 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 237 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 296

Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E   ++V   +  ++I F+ +++L+ +  I      ++ V  
Sbjct: 297 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 352 SFSGSMRPILIEAGTQSA---------AIHLISPVR 378


>gi|11320907|gb|AAG33949.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 203/382 (53%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ S  ++ L    R + +  + P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFKIKNSIFIKNLQKINRFVVKNISFPILENILISITNGILSLTATNLEIELIANIKLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + GS TVS+  L DI R   + + I          +++I    S++ L + P   FP
Sbjct: 61  KHYIAGSTTVSSRKLLDICRHSLNSSDIQIEL---CENKMHIISDKSHYILTTLPSDNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I   +  L  VATDG+
Sbjct: 118 NHNNFHHISEFYIDSNILKTMIEKTHFSMGKQDVRYYLNGMLLEIT--NHALYMVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL + +  +  QI +  SII+ RK + E+ ++L+     +++ +  + I + IE L+ + 
Sbjct: 176 RLGITKTXLKKQIIEFFSIIIARKGIIELYKLLNVSKQLIRILIGTNNIRIYIEQLTFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +L++G+FPNY ++     +  + +N   L+Q++ R +I++  +   V++ +  ++  +  
Sbjct: 236 QLLEGKFPNYDSLFVTKKNNSIILNNILLKQSLLRAAILTHEKFCGVEIYIKKNQFEVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A ++ N+ Y    + I  N  Y+L+I++ ISS     + V+  L++SN+S+ I
Sbjct: 296 DNQEEETAKDTFNINYIGPSIKISINVYYILDILNAISS-----ENVILFLNNSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  YV+M
Sbjct: 351 EAE---------NDTSTIYVVM 363


>gi|217960140|ref|YP_002338700.1| DNA polymerase III subunit beta [Bacillus cereus AH187]
 gi|222096204|ref|YP_002530261.1| DNA polymerase iii subunit beta [Bacillus cereus Q1]
 gi|229139332|ref|ZP_04267903.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
 gi|217067373|gb|ACJ81623.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|221240262|gb|ACM12972.1| dna polymerase iii, beta subunit [Bacillus cereus Q1]
 gi|228643879|gb|EEL00140.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
          Length = 376

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 174/396 (43%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++    E   +I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I             +  A +++ P+R
Sbjct: 348 SFSGSMRPILIEA---------GTQCAAIHLISPVR 374


>gi|206973618|ref|ZP_03234536.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|206747774|gb|EDZ59163.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
          Length = 376

 Score =  269 bits (687), Expect = 7e-70,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 175/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++SK   V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSKLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q +DR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGIDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++    E   +I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I             +  A +++ P+R
Sbjct: 348 SFSGSMRPILIEA---------GTQCAAIHLISPVR 374


>gi|116626974|ref|YP_819593.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMD-9]
 gi|116100251|gb|ABJ65397.1| DNA polymerase III, beta subunit [Streptococcus thermophilus LMD-9]
 gi|312277420|gb|ADQ62077.1| DNA polymerase III, beta subunit [Streptococcus thermophilus ND03]
          Length = 378

 Score =  269 bits (687), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISASE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   ++V  L D   ++   E     +V +    S   L+   
Sbjct: 63  ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSAKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + +LK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 AEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    A    +++P +++ E+  + S    ++++  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+    + LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 NVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKS-----ESVRIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|330995700|ref|ZP_08319598.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT
           11841]
 gi|329574759|gb|EGG56320.1| DNA polymerase III, beta subunit [Paraprevotella xylaniphila YIT
           11841]
          Length = 374

 Score =  268 bits (686), Expect = 8e-70,   Method: Composition-based stats.
 Identities = 91/372 (24%), Positives = 174/372 (46%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  V  S +   L    R+I  KNT+P+    L +  D +L I AS  E  +  ++   
Sbjct: 1   MKFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITSLELV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D      ++A  + D ++++ +         + +    N  +G   F +      E+P
Sbjct: 61  ESDANTRFCINAKTIQDSMKEIAEQPLSFDINPDNMEITANYQNG--RFNIVGQSADEYP 118

Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                +E +    + +  + N + R  FA A +E+R  +NG++F I  ++L    V+TDG
Sbjct: 119 EMNLPQEDMKGLVIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VSTDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +  +  + I+P+K    +  +L  +   V +  +E   ++ +ES  + 
Sbjct: 177 HKL-VRNRNYTIKGDQPAAFILPKKPATILKNLLPKESDDVTLRFNERNAYITMESSRII 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N   + V+   L  A+ RV I S+     +KL L S++L ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQLVVS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E +   Y + PM+I F   +L++I++N+       + V+  L   + + 
Sbjct: 296 GQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGG-----ENVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPAEQEENED 362


>gi|300727972|ref|ZP_07061350.1| DNA polymerase III, beta subunit [Prevotella bryantii B14]
 gi|299774814|gb|EFI71428.1| DNA polymerase III, beta subunit [Prevotella bryantii B14]
          Length = 374

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 173/386 (44%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV  + +   L    ++I  KN++ +    L    D  L I AS  E  +   I   
Sbjct: 1   MKFTVSSTALSSRLNTLSKVINSKNSLAILDSFLFHITDNQLTITASDRENVMQTTIAIE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G   +  H++ D VR+L +              ++   +G  NF  Q     EFP
Sbjct: 61  NVEGTGDFCIPNHVILDAVRELPEQPLNFDIDLESFAIKILYQNGLYNFTAQ--NAEEFP 118

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +  E   +     +S+L + + R+ FA A +E+R  +NGI+F +  + L +  VA+DG
Sbjct: 119 PVQHIEDGATEITAEASILVDNINRSLFATANDELRPVMNGIYFDLTPDSLSI--VASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     S ++P+K    +  +LS  D  V +  ++    +     +++
Sbjct: 177 HKL-VRNQNFTIKNDIPASFVLPKKPATLLKNVLSKDDGDVTIKFNDRNAEIIFTDGTLN 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  L   KL ++
Sbjct: 236 CRLIEGRYPNYNSVIPKDNPNHVTIDRKSLLSAIRRVLPFASESSQLVRFHLEMGKLEVS 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E +   Y   PM I F    LLEI++NI S     +EVV +L   + + 
Sbjct: 296 SQDLDFATAAKEHLTCEYTNKPMSIGFKGSSLLEILNNIDS-----EEVVLQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 IIVPA------TQPENEDVLMLIMPM 370


>gi|330861745|emb|CBX71919.1| DNA polymerase III subunit beta [Yersinia enterocolitica W22703]
          Length = 253

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 86/258 (33%), Positives = 144/258 (55%), Gaps = 7/258 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +ER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1   MKFIIEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   +   G  + +  G S F L + P ++FP
Sbjct: 61  HPHEQGATTVPARKFFDIWRGLPEGAEITVALD---GDRLLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +    F L  + LK L+E T F+MA +++RYYLNG+ F    E+L+   VATDGH
Sbjct: 118 NLDDWQSEVEFTLPQATLKRLIESTQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  + I  Q     S+IVPRK V E++R+L   D+ +++ +  + I  ++     + 
Sbjct: 176 RLAVCAMPI-GQTLPSHSVIVPRKGVMELVRLLDGGDTPLRLQIGSNNIRAHVGDFIFTS 234

Query: 240 RLIDGEFPNYQNVIPCSN 257
           +L+DG FP+Y+ V+P  +
Sbjct: 235 KLVDGRFPDYRRVLPKKS 252


>gi|159898038|ref|YP_001544285.1| DNA polymerase III subunit beta [Herpetosiphon aurantiacus ATCC
           23779]
 gi|159891077|gb|ABX04157.1| DNA polymerase III, beta subunit [Herpetosiphon aurantiacus ATCC
           23779]
          Length = 381

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 179/398 (44%), Gaps = 31/398 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++   + ++   L  A   +  ++++PV  ++LL    G L++  +  EI IT  + A 
Sbjct: 1   MRLACLQENLKRGLALAGHAVAGRSSLPVLANILLATESGRLKLAGNNLEIGITALVGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+IT+ A LL D+V  L +       + +     + ++   +   ++     EFP+
Sbjct: 61  VDEDGAITIPAKLLSDLVGNLPNDTV--ELEVDPRTQTLTVTCRGTKANIKGIDADEFPA 118

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKLCAVATD 177
                       L   +L+ +V +   A A E       L G+   ++         A D
Sbjct: 119 MAVPGNEPVLAYLPPELLRKVVSQVEVAAAAENTNPNPILQGVLIRLSGTQATF--AAID 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESL 235
           G+RLAV  +++    A    +++P +A+ E+ R L   ++ + +S++ +  ++  + +++
Sbjct: 177 GYRLAVRTIELPEPAAYDTELVIPSRAMAELGRTLGDSETPIAMSITSNGGQVIFHSDTV 236

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKEL--RVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
               R+IDG+FP+Y+  +P +++      ++     +AV R+++ S      V L++   
Sbjct: 237 DFVSRVIDGKFPDYERFVPPASNTSTRSVISTAEFSRAVKRIALFSQAAGNIVTLTMERG 296

Query: 291 ---SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
                 +L +  +  ++G+++E+++   +     +  N +YL E +  I +     D+V 
Sbjct: 297 DGSEPGRLLLNANAAEIGESVEAISALIDGDDGKLALNVRYLQEALGAIDT-----DQVA 351

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               + NS    R    D            +++MPMRI
Sbjct: 352 LETQTPNSPGVFRPIGGDE---------YLHLVMPMRI 380


>gi|22536187|ref|NP_687038.1| DNA polymerase III subunit beta [Streptococcus agalactiae 2603V/R]
 gi|25010077|ref|NP_734472.1| DNA polymerase III subunit beta [Streptococcus agalactiae NEM316]
 gi|76787013|ref|YP_328729.1| DNA polymerase III subunit beta [Streptococcus agalactiae A909]
 gi|76797975|ref|ZP_00780234.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21]
 gi|77405619|ref|ZP_00782708.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B]
 gi|77407693|ref|ZP_00784448.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1]
 gi|77411784|ref|ZP_00788120.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111]
 gi|77413651|ref|ZP_00789836.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515]
 gi|22533004|gb|AAM98910.1|AE014191_2 DNA polymerase III, beta subunit [Streptococcus agalactiae 2603V/R]
 gi|23094428|emb|CAD45647.1| beta subunit of DNA polymerase III [Streptococcus agalactiae
           NEM316]
 gi|76562070|gb|ABA44654.1| DNA polymerase III, beta subunit [Streptococcus agalactiae A909]
 gi|76586655|gb|EAO63154.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 18RS21]
 gi|77160306|gb|EAO71432.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515]
 gi|77162175|gb|EAO73150.1| DNA polymerase III, beta subunit [Streptococcus agalactiae CJB111]
 gi|77173692|gb|EAO76806.1| DNA polymerase III, beta subunit [Streptococcus agalactiae COH1]
 gi|77175763|gb|EAO78543.1| DNA polymerase III, beta subunit [Streptococcus agalactiae H36B]
          Length = 378

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L  L    R I  KN IP+   V ++     + +  S  +I I   IPAS 
Sbjct: 3   HFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDAIILTGSNGQISIENTIPASN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    +I+  L D        E     ++ ++ G S   L+   
Sbjct: 63  ENAGLLVTNPGSILLEAGFFINIISSLPDVTLEFTEIEQH---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   I++      AV
Sbjct: 120 VDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNK-YFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++     +  + A    ++VP K++ E   + +    +V+V  S+S++    E+
Sbjct: 179 ATDSHRMSQRTFQLE-KSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N   LR A++R  ++S+  +   V+L + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQNE 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ V      ++I FN  YL+E +  + S     + V  R  S
Sbjct: 298 TVSAHVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKS-----ETVTIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   +           +   ++ P+R
Sbjct: 353 PVRPFTLTPGED--------TEDFIQLITPVR 376


>gi|30262664|ref|NP_845041.1| DNA polymerase III subunit beta [Bacillus anthracis str. Ames]
 gi|47527976|ref|YP_019325.1| DNA polymerase III subunit beta [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49185507|ref|YP_028759.1| DNA polymerase III subunit beta [Bacillus anthracis str. Sterne]
 gi|165869103|ref|ZP_02213763.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
 gi|167632459|ref|ZP_02390786.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|167637875|ref|ZP_02396154.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|170685339|ref|ZP_02876563.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|170704813|ref|ZP_02895279.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|177649679|ref|ZP_02932681.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190565349|ref|ZP_03018269.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227814502|ref|YP_002814511.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229604660|ref|YP_002866976.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
 gi|254685252|ref|ZP_05149112.1| DNA polymerase III subunit beta [Bacillus anthracis str.
           CNEVA-9066]
 gi|254722660|ref|ZP_05184448.1| DNA polymerase III subunit beta [Bacillus anthracis str. A1055]
 gi|254737705|ref|ZP_05195408.1| DNA polymerase III subunit beta [Bacillus anthracis str. Western
           North America USA6153]
 gi|254743118|ref|ZP_05200803.1| DNA polymerase III subunit beta [Bacillus anthracis str. Kruger B]
 gi|254752020|ref|ZP_05204057.1| DNA polymerase III subunit beta [Bacillus anthracis str. Vollum]
 gi|254760541|ref|ZP_05212565.1| DNA polymerase III subunit beta [Bacillus anthracis str. Australia
           94]
 gi|30257296|gb|AAP26527.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Ames]
 gi|47503124|gb|AAT31800.1| DNA polymerase III, beta subunit [Bacillus anthracis str. 'Ames
           Ancestor']
 gi|49179434|gb|AAT54810.1| DNA polymerase III, beta subunit [Bacillus anthracis str. Sterne]
 gi|164715829|gb|EDR21346.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0488]
 gi|167514424|gb|EDR89791.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0193]
 gi|167532757|gb|EDR95393.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0442]
 gi|170130614|gb|EDS99475.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0389]
 gi|170670699|gb|EDT21438.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0465]
 gi|172084753|gb|EDT69811.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0174]
 gi|190563376|gb|EDV17341.1| DNA polymerase III, beta subunit [Bacillus anthracis
           Tsiankovskii-I]
 gi|227007484|gb|ACP17227.1| DNA polymerase III, beta subunit [Bacillus anthracis str. CDC 684]
 gi|229269068|gb|ACQ50705.1| DNA polymerase III, beta subunit [Bacillus anthracis str. A0248]
          Length = 376

 Score =  268 bits (686), Expect = 9e-70,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R+ L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRHVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E   ++V   +  ++I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIQISSNASQIGKISEKQQIDVIQGKKQLNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I    + +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTQSA---------AIHLISPVR 374


>gi|254468927|ref|ZP_05082333.1| DNA polymerase III, beta subunit [beta proteobacterium KB13]
 gi|207087737|gb|EDZ65020.1| DNA polymerase III, beta subunit [beta proteobacterium KB13]
          Length = 316

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/336 (30%), Positives = 180/336 (53%), Gaps = 21/336 (6%)

Query: 51  IEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           ++ +  I   ++    IT+SA  L+DI R L + +++ F       + VN+  G S F L
Sbjct: 1   MQTSLNIDTKIETDFEITISARKLFDITRALPENSELDFQINE---SRVNVKAGKSKFNL 57

Query: 111 QSFPESEFPSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
           Q+ P  ++P  K+ +    S +L+ + LK L+++  FAMA ++IRYYLNG+ F I  +  
Sbjct: 58  QTLPSKDYPLLKKNDSESVSVKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQ-- 115

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           KL  V TDGHRL+     +     K   +I+PRK + E++++L   D  V++ +   ++ 
Sbjct: 116 KLNIVGTDGHRLSFTSTKLDDSYEKKE-VIIPRKTIMELIKLLDDSDEIVELEILNQQVT 174

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                + +  ++IDG+FP+Y  VIP   +    ++   L  A+ R SI+S+ + + ++L 
Sbjct: 175 FKFGDIFIITKVIDGKFPDYNRVIPVGYENGFLIDRQMLLNAMQRASILSNEKYRGIRLV 234

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           LS + + +   N +  +A E + + YN+  +DI FN  YL+++++NI       D++ F 
Sbjct: 235 LSENNMQLITTNSEQEEAQEDIEILYNKEAIDIGFNVTYLIDVLNNIQ-----FDQLSFT 289

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              SNSS  +   + D         +  YV+MPMRI
Sbjct: 290 FKDSNSSCLVTIPNND---------DYKYVVMPMRI 316



 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 25/176 (14%), Positives = 61/176 (34%), Gaps = 6/176 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP-EIEITGAIPASV 61
           + + ++ + ELL      + +++       +L +     L I  +    +  T       
Sbjct: 78  VKLSQNKLKELLKQVDFAMAQQDIRYYLNGLLFEIQGQKLNIVGTDGHRLSFTSTKLDDS 137

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
                + +    + ++++ L D  +I   +   L  +V    GD  F +    + +FP  
Sbjct: 138 YEKKEVIIPRKTIMELIKLLDDSDEIVELEI--LNQQVTFKFGDI-FIITKVIDGKFPDY 194

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                V          + L+     A      +Y   GI   ++E +++L    ++
Sbjct: 195 NRVIPVGYENGFLIDRQMLLNAMQRASILSNEKY--RGIRLVLSENNMQLITTNSE 248


>gi|325678528|ref|ZP_08158139.1| DNA polymerase III, beta subunit [Ruminococcus albus 8]
 gi|324109747|gb|EGC03952.1| DNA polymerase III, beta subunit [Ruminococcus albus 8]
          Length = 370

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 180/387 (46%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    ++ + + + +  + +  ++T+P    +     D LLE+     E+ I  AIP  
Sbjct: 1   MRFICSKTSLYDAIVNVSKAVSERSTLPSLEGIRFSLADSLLELTGYNLEMGIRTAIPVR 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  GS  ++A L  ++++K+ D  ++           ++ S   + F + +   +++P 
Sbjct: 61  SDDKGSCIMNARLFAEMIKKM-DTEELLIDVSESYQVTISGSATKTTFNMFAATAADYPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E++      +A  VLKN++ +T FA+A  + +  L G  F I  E+  L  VA DG+R
Sbjct: 120 LPEKDSETQIPIAQPVLKNMIAQTKFAVAMTDDKPILKGELFDI--ENNTLTMVAIDGYR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           +AV    +     +    +VP K++ EI  +LS  +D +V +  S   I  +I    +  
Sbjct: 178 MAVRYEPVK--FNEPIKFVVPSKSLSEIQSLLSDNEDDTVYIHPSRKHIIFDIGGYVVYS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDKLCMT 298
           RL++G+F  Y++ IP S++ ++ V+   L   ++R  ++ + R    V+    +D + + 
Sbjct: 236 RLLEGDFHPYKSAIPNSSNTDVVVDRKALISTLERAMLLINDRSPSPVRCYFDNDHVKLN 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
                +GK  + +        ++I F  KYLLE +  I      D++V   +  S  ++ 
Sbjct: 296 CVAA-LGKISDEIAADVTGPVIEIGFKCKYLLEPLKVID-----DEKVKLMMGGSLLAMK 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   + +            Y+++P+R+
Sbjct: 350 IVPCEGE---------KYTYLVLPVRL 367


>gi|189218019|ref|YP_001938661.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum
           V4]
 gi|189184877|gb|ACD82062.1| DNA polymerase sliding clamp subunit [Methylacidiphilum infernorum
           V4]
          Length = 371

 Score =  268 bits (686), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 100/389 (25%), Positives = 186/389 (47%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK +VE+   ++ L     II  ++T+P+  HVLL A     L   A+  +  +   + A
Sbjct: 1   MKFSVEKKSFIDSLTLIQSIINPRSTLPILSHVLLSAKAPDRLLFFATDLQTALKIELTA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V+  G+ T+ A  L  IVR+L D  Q+S+        +  +S   S F L   P+ ++P
Sbjct: 61  NVEEEGTTTLPARRLLTIVREL-DSDQLSWKT--NSNHQTTLSSDRSFFQLNGLPDDDYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               E       ++   ++ ++    +AMA +E R  LNG +F I     +     TDG 
Sbjct: 118 KFFPERREEGLSISQGKIRKMLRMVEYAMA-DESRPALNGAWFSIK--SGRFEVAVTDGK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA    ++  +  +    IVP KAV EI RI+   D ++K+ L  ++I L ++++    
Sbjct: 175 RLAYTFEEVENESFEAEG-IVPAKAVLEISRIIEDSDKTLKLFLDSNKIFLELDNILFFS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ--AVKLSL-SSDKLC 296
           +L +G++PN++ VIP +  ++  ++  +   A+ RVS ++        V L    +++L 
Sbjct: 234 KLTEGKYPNFKQVIPKTTTQKAVIDRNSFLHAIRRVSSIAISGSNSLPVVLDFLGTNELV 293

Query: 297 MTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++   P++G+A E++++  +      I FN  YL+E +  +  ++V+ + V      +  
Sbjct: 294 LSCQAPEIGQARETISLKAFQGEAFSIPFNPLYLIEPLREMEKEDVILEFVNPSTKGN-- 351

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              I               N  YVLMP++
Sbjct: 352 PCLIT-----------EGTNFVYVLMPIK 369


>gi|229060366|ref|ZP_04197732.1| DNA polymerase III, beta subunit [Bacillus cereus AH603]
 gi|228718956|gb|EEL70573.1| DNA polymerase III, beta subunit [Bacillus cereus AH603]
          Length = 376

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I  +  KL 
Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E+ I +      + IVP   + E+L++++S  + V + LSES I    
Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPSSTISELLKLMNSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  ++  + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DEFTIQISSNASQIGKISETQQIDAIHGEKQLNIAFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|47570668|ref|ZP_00241271.1| DNA polymerase III, beta subunit [Bacillus cereus G9241]
 gi|47552665|gb|EAL11113.1| DNA polymerase III, beta subunit [Bacillus cereus G9241]
          Length = 376

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 175/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNV--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN  ++IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++    E   +I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + +      +         A +++ P+R
Sbjct: 348 SFSGSMRPILVEAGTHSA---------AIHLISPVR 374


>gi|225867619|ref|YP_002743567.1| DNA polymerase III, beta chain [Streptococcus equi subsp.
           zooepidemicus]
 gi|225700895|emb|CAW97554.1| DNA polymerase III, beta chain [Streptococcus equi subsp.
           zooepidemicus]
          Length = 378

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IP+   + ++ N   + +  S  +I I   IP S 
Sbjct: 3   QFSINRALFIQALTATKRAISSKNAIPILSTIKIEVNPSDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G++ + A    +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSTGAVLLEASFFINIISSLPDVSLEFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            S++P  +E        L + +LK+++  T FA + +E R  L G+   +++      AV
Sbjct: 120 ISQYPRLQEVSTENPLILNTRLLKSIIAETAFAASMQESRPILTGVHITLSQHKD-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S++    + 
Sbjct: 179 ATDSHRMSQRLITLDKTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSASQMLFRSDY 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E   N  +LR A++R  ++S+  +   VKL + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMKDFETEAVFNTQSLRHAMERAFLISNATQNGTVKLEIEAN 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++   V++P++GK  E ++V       + I FN  YL+E +  I S     + V     S
Sbjct: 298 RISAHVNSPEVGKVNEDLDVVSQAGSDLTISFNPTYLIEALKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D +         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376


>gi|55821995|ref|YP_140436.1| DNA polymerase III subunit beta [Streptococcus thermophilus
           CNRZ1066]
 gi|55737980|gb|AAV61621.1| beta subunit of DNA polymerase III [Streptococcus thermophilus
           CNRZ1066]
          Length = 378

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISASE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   ++V  L D   ++   E     +V +    S   L+   
Sbjct: 63  ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSAKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + +LK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 AEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    A    +++P +++ E+  + S    ++++  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+    + LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 NVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKS-----ESVRVRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|317503310|ref|ZP_07961360.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae
           DSM 15606]
 gi|315665569|gb|EFV05186.1| DNA-directed DNA polymerase III beta subunit [Prevotella salivae
           DSM 15606]
          Length = 373

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 109/386 (28%), Positives = 180/386 (46%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  S +   L    ++I  KN++P+    L + ++  L+I AS  E  +T  +P  
Sbjct: 1   MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDNENVMTSLVPLS 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  V    + D V++L +           L  ++   +G  NF  Q     E+P
Sbjct: 61  ECDGEGSFAVPNRTILDAVKELPEQPLQFEVDIEALTIKILYQNGMYNFTAQ--NADEYP 118

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+   +  +   +AS+ L N + R+ FA AT+E+R  +NGI+F +  +   L  VATDG
Sbjct: 119 HTQAVPDGAHVITMASNSLINNITRSLFATATDELRPVMNGIYFDLTPD--YLAIVATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   D   +     S I+P+K    +  +LS  DS V +   +    +      + 
Sbjct: 177 HKL-VRNQDYTVKSDTPASFILPKKPATLLKNVLSKDDSDVVIKFDDRTTEIRFAEGQLC 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  + S KL ++
Sbjct: 236 CRLIEGNYPNYNSVIP-ENPHNMSIDRKSLIGALRRVLPFASESSQLVRFRIESGKLEVS 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E +   YN   M I F    L EI++N+       DEV F+L   + + 
Sbjct: 295 SEDIDFATSAKEQIVCDYNGPQMSIGFKGSSLQEILNNLDC-----DEVNFQLADPSRAG 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I   ++         VN   ++MPM
Sbjct: 350 VIVPTEQP------ENVNVLMLIMPM 369


>gi|157151517|ref|YP_001449324.1| DNA polymerase III subunit beta [Streptococcus gordonii str.
           Challis substr. CH1]
 gi|157076311|gb|ABV10994.1| DNA polymerase III, beta subunit [Streptococcus gordonii str.
           Challis substr. CH1]
          Length = 378

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I  + 
Sbjct: 3   NFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISVNN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVTSLGSILLEATFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  ++        L + +LK+L+  T FA + +E R  L G+ F +  +   L  V
Sbjct: 120 ADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLT-DHKNLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + S +  +V+V  +  +I    E+
Sbjct: 179 ATDSHRLSQKKIILEKN-GDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      +    + LR A++R  ++S+  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEIEGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++    +   + I FN  YL+E +  ++S++     V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDAENVSGENLTISFNPTYLIEALKAVNSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D++         +   ++ P+R
Sbjct: 353 AVRPFTLVPSDQEE--------DFIQLITPVR 376


>gi|319746184|gb|EFV98454.1| DNA-directed DNA polymerase III beta subunit [Streptococcus
           agalactiae ATCC 13813]
          Length = 378

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 90/392 (22%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L  L    R I  KN IP+   V ++     + +  S  +I I   IPAS 
Sbjct: 3   HFSINKNFFLHALTVTKRAISHKNAIPILSTVKIEVTRDTIILTGSNGQISIENTIPASN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    +I+  L D        E     ++ ++ G S   L+   
Sbjct: 63  ENAGLLVTNPGSILLEAGFFINIISSLPDVTLEFTEIEQH---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   I++      AV
Sbjct: 120 VDQYPRLQEMTTDTPLTLETKLLKSIINETAFAASQQESRPILTGVHLVISQNK-YFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++     +  + A    ++VP K++ E   + +    +V+V  S+S++    E+
Sbjct: 179 ATDSHRMSQRTFQLE-KSANNFDLVVPSKSLREFSAVFTDDIETVEVFFSDSQMLFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N   LR A++R  ++S+  +   V+L + ++
Sbjct: 238 ISFYTRLLEGNYPDTDRLLTNQFETEIIFNTNALRHAMERAYLISNATQNGTVRLEIQNE 297

Query: 294 KLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++ V      ++I FN  YL+E +  + S     + V  R  S
Sbjct: 298 TVSAYVNSPEVGKVNEELDTVSLKGDSLNISFNPTYLIESLKAVKS-----ETVTIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   +           +   ++ P+R
Sbjct: 353 PVRPFTLTPGED--------TEDFIQLITPVR 376


>gi|163940409|ref|YP_001645293.1| DNA polymerase III subunit beta [Bacillus weihenstephanensis KBAB4]
 gi|163862606|gb|ABY43665.1| DNA polymerase III, beta subunit [Bacillus weihenstephanensis
           KBAB4]
          Length = 376

 Score =  268 bits (685), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKTLIPILSGIKITADQSGITLIASNSNIFIEKFIPIS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          GSI V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQITTILKAGSIVVPAKYFIEIIKKMPSEILIKSMNEQL----ITIQSDEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I  +  KL 
Sbjct: 117 LSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRPVLTGVHFVI--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E+ I +      + IVP   + E+L++++S  + V + LSES I    
Sbjct: 175 CAATDSHRLALREIPISSHA--KLNCIVPNSTISELLKLMNSNSNLVYIYLSESHIIFKF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V L + 
Sbjct: 233 STITLYSRLIEGKYPNISGLIPNESQTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  ++  + E  ++I F+ +Y+++ +  I      +D V  
Sbjct: 293 DECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----EDRVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A Y++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVYLISPVR 374


>gi|308235534|ref|ZP_07666271.1| DNA polymerase III subunit beta [Gardnerella vaginalis ATCC 14018]
 gi|311114015|ref|YP_003985236.1| DNA-directed DNA polymerase III subunit beta [Gardnerella vaginalis
           ATCC 14019]
 gi|310945509|gb|ADP38213.1| DNA-directed DNA polymerase III beta subunit [Gardnerella vaginalis
           ATCC 14019]
          Length = 372

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 89/386 (23%), Positives = 171/386 (44%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +    R+I+ +   P+   + L+A DG+L++ A   ++     + A 
Sbjct: 1   MKVEVNSASFADAVAWTTRVIDSRPANPILAGLKLEAKDGILQLSAFNYQLSSRHHVEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  GS+ V   L+ DI + L          E    T + IS G S F LQ  PE E+P 
Sbjct: 61  IDEQGSVLVLGKLMADITKSLPSEKTYLSSNE----TTLTISSGKSTFTLQLMPEGEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +          +      V +   A++ EE R  L GI  H  ++ +     ATD +R
Sbjct: 117 LPQIPEKLGQV-DAPTFVQAVVQASVAVSREEDRPVLTGIHAHFEDDSVTF--TATDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESLSM 237
           LA +      +   + +  + + ++   +     +  +V V+L++   S +         
Sbjct: 174 LARSTFKWTPEHFDINTSTLIKGSILRDISRSIDEHQNVIVNLNDKEPSILGFENSGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP+   +          +N T L  A+ RV++++  +   + +S S D+L +
Sbjct: 234 TSQLIDGEFPSVDRLFVDEYPIHAIINRTMLINAIKRVALVA-EKDAPIYMSFSGDELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  N    +A E +++  +   + + FN  YL+E +  IS     +  V  ++ S+   V
Sbjct: 293 SAGNDSESQAKELIDIDMDGQDIIVAFNPNYLIEGLSAIS-----EPFVHAKITSAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
              G+ +    + D  +N  Y+++PM
Sbjct: 348 EFNGQQE---ADGDESMNYRYLVVPM 370


>gi|6606556|gb|AAF19207.1|AF213932_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 102/385 (26%), Positives = 214/385 (55%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++    ++ L    R+I + +T+P+  ++L+  N+G++ +  +  E E+   I  S
Sbjct: 1   MKFNIKNKIFIQHLKKVNRLISKNSTLPILENILITVNNGIISLTTTNLETELISNIETS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I R   + ++I      +   +++I+  +SN+ L + P   FP
Sbjct: 61  KTHTPGSITVSGQKLLNICRNSSESSEIKISLNED---KMHIASDNSNYILTTLPSENFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  +  ++  F ++S +LK ++E+T F+M  +++RYYLNG+     +    L AVATDG+
Sbjct: 118 NHNKFHHISEFFISSDILKKMIEQTQFSMGKQDVRYYLNGMLLE--KNKTSLYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL + +  +   +  + S+I+PRK + E+ ++L+ +   + V + ++ I ++IE L  +V
Sbjct: 176 RLGITKTFLKEDV-FIFSVIIPRKGIIELHKLLNIEPQLIHVLIGKNNIRIHIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++++    +  + +N   L+Q++ RV+++S      V++ ++++K  +  
Sbjct: 235 QLIEGEYPDYKSILLRKKNHSIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N D  KA +S  + Y    ++I  N  Y++E++  I+S       +   ++ SN+S+ I
Sbjct: 295 NNQDEEKAEDSFKINYCGDDIEISINVYYIIEVLSVITSK-----NIFMFINESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++ +S         + YV+M +R
Sbjct: 350 ESEEDNS---------SLYVIMLLR 365


>gi|33519499|ref|NP_878331.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus]
 gi|33517162|emb|CAD83544.1| DNA polymerase III beta-subunit [Candidatus Blochmannia floridanus]
          Length = 367

 Score =  267 bits (684), Expect = 1e-69,   Method: Composition-based stats.
 Identities = 113/386 (29%), Positives = 195/386 (50%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   VER+DI   L     II+ ++ +P+  H+LL   D  L I A+  EIEI   I   
Sbjct: 1   MDFFVERNDIYASLRKVINIIDSRSRLPILKHILLDVCDDRLFITATDLEIEIVAEILLD 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              +  S+TV  +  ++I + L + ++I    +        IS G SNF L   P  +FP
Sbjct: 61  KKYIVNSVTVPGYKFFEICQNLPENSKIHILLQE---NRFLISSGCSNFVLSILPVLDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             K+ E      +   VLK +++ T F+M  ++ RYYLNGI     +    +  V+TDG+
Sbjct: 118 KVKKYENESYITIPQCVLKKMIKLTQFSMGYQDSRYYLNGICLKTEKN--TISMVSTDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL++ EV     +    S+I+PRK V EI  +L +    VK+ +  + I++ + +  +  
Sbjct: 176 RLSMCEVT-SKLLLPFQSVIIPRKGVLEIFSLLGNGKELVKMQVCNNNIYIKMNNYVIRS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LID EFP+Y+ +          ++   L+ A+ R SI+S+ +++ V   L+S++L +T 
Sbjct: 235 KLIDSEFPDYKKIFLNQPKIFFEIDRIVLKHALKRASILSNEKLRIVNFYLTSNQLKITT 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN     + E + + ++   + I FN  YLL++I+ + S       + F L ++ SSV I
Sbjct: 295 DNFKEETSEEILKILFSYENISISFNVDYLLDVINVVDSQ-----MLKFSLINTVSSVQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
            G  K           + Y++MP+++
Sbjct: 350 EGVPK--------YYGSIYIIMPVKV 367


>gi|289166911|ref|YP_003445178.1| DNA polymerase III, beta subunit [Streptococcus mitis B6]
 gi|288906476|emb|CBJ21306.1| DNA polymerase III, beta subunit [Streptococcus mitis B6]
          Length = 378

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I    
Sbjct: 3   HFSINKNLFLQALNTTKRAISSKNAIPILSTIKIDVTNEGVTLIGSNGQISIENFISQKN 62

Query: 62  DVCG-------SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +  G       SI + A    ++V  L D   ++   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLITSLGSILLEASFFINVVSSLPD---VTLDFKEIEQNQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK ++  T FA + +E R  L G+ F +++   +L  V
Sbjct: 120 SEQYPRIQEISVSTPLVLETKLLKKIINETAFAASIQESRPILTGVHFVLSQHK-ELKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + +    +V++  + ++I    E+
Sbjct: 179 ATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSAVFTDDIETVEIFFANNQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +  +  +  NLRQ+++R  ++SS  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTDFNTTITFDVINLRQSMERARLLSSATQNGTVKLEIKGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V +P++GK  E ++        + I FN  YL++ +  ++S     ++V     S
Sbjct: 298 IVSAHVHSPEVGKVNEEIDTDQVIGEDLTISFNPTYLIDSLKALNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D D         +   ++ P+R
Sbjct: 353 AVRPFTLVPADTD--------EDFMQLITPVR 376


>gi|239947309|ref|ZP_04699062.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
 gi|239921585|gb|EER21609.1| DNA polymerase III, beta subunit [Rickettsia endosymbiont of Ixodes
           scapularis]
          Length = 379

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 113/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFASSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G +TVS   L DIVRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGELTVSTKTLNDIVRKLPDSEL---TLTDLGTTGLEIKGKNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++   C+ +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FCSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  +++ LS ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINEDIEILLSSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGIFPDYSAFIPESSSSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N   +         +  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAKEVINSSQDKESFYEYNSDESLAIGFNPQYLEDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSDISAPVLIKFPENPKD---------IFVVMPVKV 379


>gi|323126261|gb|ADX23558.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp.
           equisimilis ATCC 12394]
          Length = 378

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IPV   + +  +   + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIQALNATKRGISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEIAQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D +         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376


>gi|228985790|ref|ZP_04145940.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228773962|gb|EEM22378.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 376

 Score =  267 bits (684), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 174/396 (43%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  MDDEQITTTLKAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNV--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN  ++IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  ++    E   +I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + +                A +++ P+R
Sbjct: 348 SFSGSMRPILVEAGTHSV---------AIHLISPVR 374


>gi|196040371|ref|ZP_03107672.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
 gi|196028856|gb|EDX67462.1| DNA polymerase III, beta subunit [Bacillus cereus NVH0597-99]
          Length = 376

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  +     E  ++I F+ ++++E +  I      ++ +  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +           +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSAV---------VHLISPVR 374


>gi|55820105|ref|YP_138547.1| DNA polymerase III subunit beta [Streptococcus thermophilus LMG
           18311]
 gi|55736090|gb|AAV59732.1| beta subunit of DNA polymerase III [Streptococcus thermophilus LMG
           18311]
          Length = 378

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I AS 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSDGIYLTGSNGQISIENSISASE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   ++V  L D   ++   E     +V +    +   L+   
Sbjct: 63  ENAGLLITQPGSILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSAKTEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + +LK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 AEQYPRIQEVDSLTPLIMDTKMLKSIIAETSFAASTQESRPILTGVHFVLS-NHKDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    A    +++P +++ E+  + S    ++++  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDGIENLEIFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+    + LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETSTLRSAMERSYLISNASQSGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 NVSAHVNSPEVGKVNEDIDVLDVSGSDLIISFNPTYLIDALKALKS-----ESVRIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|198274685|ref|ZP_03207217.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135]
 gi|198272132|gb|EDY96401.1| hypothetical protein BACPLE_00841 [Bacteroides plebeius DSM 17135]
          Length = 405

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 94/364 (25%), Positives = 176/364 (48%), Gaps = 13/364 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  V  + +   L    R+I  +N++P+    L +  DG L + AS  +  ++ +I   
Sbjct: 32  MKFIVSSTALFSHLQAISRVINSRNSLPILDCFLFELRDGTLFMTASDNDTTLSTSIEVN 91

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G   VS+  L + ++++ +       + + +  E+ + + +  + L      E+P
Sbjct: 92  ESDSDGRFAVSSKTLLEALKEIPEQPLSFHIEPSNM--EITVEYLNGKYSLMGQNADEYP 149

Query: 120 STKE-EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +          + + +L N V R+ FA A +E+R  +NGI+F I+ ED+ L  VA+DG
Sbjct: 150 QAQALGSNAVQVTMGAEILMNGVNRSLFATADDELRPVMNGIYFDISTEDITL--VASDG 207

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V      A+ A+  + I+P+K    +  +L  +   V++   +      +E+  M 
Sbjct: 208 HKL-VRCKTYAARGAEKAAFILPKKPANLLKNLLPKEQGDVQIGFDDRNAMFTLENYQMI 266

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N     ++      A+ RVS+ SS     +KLSLS +++ ++
Sbjct: 267 CRLIEGRYPNYNSVIPQNNPHRAIIDRALFISALRRVSVFSSQSSSLIKLSLSENQMKIS 326

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y   PM I F   +L++I++NIS+       ++  L   + + 
Sbjct: 327 AQDIDFSTSAEETIACQYGGNPMSIGFKSSFLIDILNNISAQ-----NIIIELADPSRAG 381

Query: 358 FIRG 361
            I  
Sbjct: 382 VIVP 385


>gi|326562315|gb|EGE12641.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 103P14B1]
 gi|326575519|gb|EGE25444.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 101P30B1]
          Length = 385

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPEETVVIDAPED--TTRCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  ++D   + V N ++G+A E + V Y+   +++ FN  YL  +++ +    
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               EV   L+  +S   I     D            YV+MPMR
Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384


>gi|322373977|ref|ZP_08048511.1| DNA polymerase III, beta subunit [Streptococcus sp. C150]
 gi|321276943|gb|EFX54014.1| DNA polymerase III, beta subunit [Streptococcus sp. C150]
          Length = 378

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/392 (22%), Positives = 182/392 (46%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           +  + ++  L+ L    R I  KN IP+   + ++     + +  S  +I I  +I  S 
Sbjct: 3   QFAINKAYFLQALHTTRRAISSKNAIPILSTIKIEVTSEGIYLTGSNGQISIENSISVSE 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A+   ++V  L D   ++   E     +V +  G S   L+   
Sbjct: 63  ENAGLLITQSGTILLEANFFINVVSSLPD---VTLTFEEIEQYQVLLKSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E + +    + + VLK+++  T FA +T+E R  L G+ F ++     L AV
Sbjct: 120 VEQYPRIQEVDSLTPLMMNTKVLKSIISETSFAASTQESRPILTGVHFVLS-NHNDLKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +    A    +++P +++ E+  + S    +++V  S ++I    E+
Sbjct: 179 ATDSHRMSQRQLVLE-HSADNFDVVIPSRSLKELSAVFSDDIDNLEVFFSANQILFRSET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++  S + E+     +LR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTNRLLSDSFETEVVFETASLRSAMERSYLISNASQSGTVKLEIVNG 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E ++V   +   + I FN  YL++ +  + S     + V  R  S
Sbjct: 298 NVSAHVNSPEVGKVNEDIDVQDVSGSDLIISFNPTYLIDALKALKS-----ETVRVRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPADD--------SENFIQLITPVR 376


>gi|50839100|gb|AAT81767.1| DNA polymerase III, beta chain [Propionibacterium acnes KPA171202]
 gi|332674400|gb|AEE71216.1| DNA polymerase III subunit beta [Propionibacterium acnes 266]
          Length = 503

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 174/401 (43%), Gaps = 35/401 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A V
Sbjct: 119 EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 178

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   VS  LL DI R L +       +      ++++  G + F LQ+ P  E+P  
Sbjct: 179 DEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 234

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +R+
Sbjct: 235 PQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 291

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234
           A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +  
Sbjct: 292 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 350

Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ ++
Sbjct: 351 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 409

Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344
            D + ++    D  +A E++      + +  P  I    FN  YL + +  + +      
Sbjct: 410 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 463

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      + G +     +   + +  +V+M MR+
Sbjct: 464 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 501


>gi|322412916|gb|EFY03823.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp.
           dysgalactiae ATCC 27957]
          Length = 378

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 93/393 (23%), Positives = 178/393 (45%), Gaps = 29/393 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IPV   + +  +   + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIQALNITKRAISSKNAIPVLSTIKIDVSSSDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEIAQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     D V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGNDLTISFNPTYLIESLKAIKS-----DTVKIHFLS 352

Query: 353 SNSS-VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                  I G D++S            ++ P+R
Sbjct: 353 PVRPFTLIPGDDEES---------FIQLITPVR 376


>gi|11320899|gb|AAG33945.1|AF197885_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  267 bits (683), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 200/382 (52%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGILSLTATNLEIELIANIQLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  THYISGNTTVSSRKLLDICRHSLNTSNINIELN---ANKIHIISNTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S +LK+++E+THF+M  +++RYYLNG+   +      L  VATDG+
Sbjct: 118 NHNHFHHISEFCIDSHILKDMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +    +  Q  +  SI++ RK + E+ ++L+     +++ + ++ I + IE L  + 
Sbjct: 176 RLGITHTLLKQQQIESFSIVMTRKGIIELYKLLNISRQLIRILIGKNSIRIYIEQLVFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FPNY ++     +  + +NC  L+Q++ R +I++  +   V++ +  ++  +  
Sbjct: 236 QLIEGKFPNYNSIFLKKKNNAIILNCALLKQSLLRAAILTHEKFCGVEIHIKKNQFTVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A ++ N+ Y    + I  N  Y+L+++++ISS     + ++  L++SN+S+ I
Sbjct: 296 DNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISS-----ENILLFLNNSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  Y++M
Sbjct: 351 EAE---------NDTSTIYIVM 363


>gi|332980607|ref|YP_004462048.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON]
 gi|332698285|gb|AEE95226.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON]
          Length = 371

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 185/390 (47%), Gaps = 25/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT E+ D++  L  A + +  K  IP+  +++++  D    +K++  EI I   +  +
Sbjct: 1   MIITCEKDDLVNALSIAEKALPSKTIIPMLNNIIIETVDDATHLKSTDTEISIDTVLNGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS+ ++  L  DI R L          +     E +I  G S   ++     +FP 
Sbjct: 61  IIDQGSVALNGRLFIDIARSLPKEQVTIKVDD---HNEASIKCGLSEISIKGMGTVDFPQ 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                   SF ++S++ ++++ +T F++A  ++ R  L G       +++ L  V+ DG+
Sbjct: 118 LPVISNGMSFNISSTIFRDMIRQTAFSIAPPDDNREVLTGELLKFENDEIML--VSVDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+++   +I     +    ++P KA+ E++RIL     ++ + + + R    I    M+ 
Sbjct: 176 RISIRYEEISEIPDRQFEAVIPGKALMELMRILPPTQENLNIKIDDKRAAFTINGTVMTA 235

Query: 240 RLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
           +L++ +F NY++++          + VN  +L  A +R  +++   +   +KLS+S   +
Sbjct: 236 QLLNSKFINYEDILLPELSETKTTITVNRADLLSAAERAMLVAKEGKSSLIKLSISEHGM 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T  N D+GK  E + +  N   ++I FN +YL + +  +      D++V+ + +S  S
Sbjct: 296 VLTS-NADIGKVHEDIPIDINGSAIEIAFNGRYLTDPLKVVD-----DEQVLMKFNSDVS 349

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              I   D  S           Y+++P+R+
Sbjct: 350 PCIIEPVDGKS---------FLYLVLPVRM 370


>gi|228939801|ref|ZP_04102379.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|228972690|ref|ZP_04133290.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228979275|ref|ZP_04139613.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407]
 gi|228780476|gb|EEM28705.1| DNA polymerase III, beta subunit [Bacillus thuringiensis Bt407]
 gi|228787055|gb|EEM35034.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           thuringiensis str. T01001]
 gi|228819897|gb|EEM65944.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           berliner ATCC 10792]
 gi|326940453|gb|AEA16349.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 376

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|326571821|gb|EGE21827.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC7]
          Length = 385

 Score =  267 bits (682), Expect = 2e-69,   Method: Composition-based stats.
 Identities = 110/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   G  T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGGTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      + + +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSAIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNGITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  ++D   + V N ++G+A E + V Y+   +++ FN  YL  +++ +    
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               EV   L+  +S   I     D            YV+MPMR
Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384


>gi|326560702|gb|EGE11070.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 46P47B1]
 gi|326561744|gb|EGE12079.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 7169]
 gi|326569035|gb|EGE19104.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC1]
          Length = 385

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  ++D   + V N ++G+A E + V Y+   +++ FN  YL  +++ +    
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               EV   L+  +S   I     D            YV+MPMR
Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384


>gi|319778797|ref|YP_004129710.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9]
 gi|317108821|gb|ADU91567.1| DNA polymerase III beta subunit [Taylorella equigenitalis MCE9]
          Length = 380

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/396 (28%), Positives = 197/396 (49%), Gaps = 32/396 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI----- 57
             +    I + L     I+E+K ++P+  HVL++     L++  S   I+IT  +     
Sbjct: 4   FQLGTEAIRKPLDTVVGIVEKKASLPILSHVLIKKGPQSLDLVTSDLSIQITTKLRFGED 63

Query: 58  -----PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                P        + V A  L +I+R +  GA I     N   +++ +S  DS F LQ+
Sbjct: 64  DSSSAPVDDAEIIKVAVPALKLQNIIRVMPTGAMIEA---NLNESKITLSADDSRFTLQT 120

Query: 113 FPESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            P +++P    + E+   F +    LK ++     AMA  +IRYYLNG+   I      L
Sbjct: 121 LPGADYPDANFDTEWKVRFSIDVQALKKILNLVSCAMAQSDIRYYLNGMLLVIEPG--ML 178

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             VATDGHRL+ A   I   +     +I+PRK V ++LR+L    + V+VS+S   I   
Sbjct: 179 HGVATDGHRLSHAAETIEG-VTDQTKVIIPRKTVEQLLRLLDESHNEVQVSVSGRSIQFK 237

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSL 290
              + +  + ++G+FP+++ VIP   + E+ +N +     + R +I+ +  ++ ++KL  
Sbjct: 238 FGDIEVLSKQVEGKFPDFEKVIPKGYNTEIIINRSEFSDNLQRANILVNEDKLHSIKLHF 297

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++++L ++  N D  ++   +++ YN  P+D+ FN  YLLE++  ++S     + V   +
Sbjct: 298 ANNRLTISSSNLDQEESKMELDIEYNNNPIDMGFNALYLLEVLSVLNS----YENVTLSM 353

Query: 351 DS-SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              SNSS+ I  K+ D            YV+MP+RI
Sbjct: 354 SGESNSSLLISIKEDDQ---------FKYVVMPLRI 380


>gi|49479172|ref|YP_036786.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           konkukian str. 97-27]
 gi|49330728|gb|AAT61374.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           konkukian str. 97-27]
          Length = 376

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+ 
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKAVIPILSGIKITADQSGITLIASNSNIFIEKFIPSV 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPANEFPNVPQIDGHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  +     E  ++I F+ ++++E++  I      ++ +  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEVLKAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +           +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSAV---------VHLISPVR 374


>gi|229150900|ref|ZP_04279111.1| DNA polymerase III, beta subunit [Bacillus cereus m1550]
 gi|228632460|gb|EEK89078.1| DNA polymerase III, beta subunit [Bacillus cereus m1550]
          Length = 376

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   +K +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEKSA---------AVHLISPVR 374


>gi|218897702|ref|YP_002446113.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228901233|ref|ZP_04065431.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222]
 gi|218540909|gb|ACK93303.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|228858404|gb|EEN02866.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 4222]
          Length = 376

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AIHLISPVR 374


>gi|196230262|ref|ZP_03129125.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428]
 gi|196225859|gb|EDY20366.1| DNA polymerase III, beta subunit [Chthoniobacter flavus Ellin428]
          Length = 280

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/285 (30%), Positives = 151/285 (52%), Gaps = 6/285 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V +  +L  L     ++  + T+P+  +VLLQA    L +  +  ++ ++GAI A 
Sbjct: 1   MKFSVSKEKLLAGLQTVQNVVSTRTTLPILSNVLLQAEGDQLRLTTTDLDVGVSGAITAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ T+ A  L++IVR+L     I    E +     +I  G S F +   PE EFP 
Sbjct: 61  VEKPGATTLPARRLFNIVRELPAAEII---VEVDSKNVASIRCGQSFFKILGLPEEEFPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             ++    +F +   VL++ +++T +A++T+E RY LNGI F   E   K+  VATDG R
Sbjct: 118 LPKQTDARTFTIGQQVLRDALKKTSYAISTDETRYVLNGILFSFKEN--KVTLVATDGRR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ ++++    ++   IIVP KAV E+ R+L   +  V++S+ E+++   I    ++ +
Sbjct: 176 LALVDLEVEFPRSQEVDIIVPTKAVTELGRLLGD-EGDVRLSVEENQVAFQIGDTLLASK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           LI+G +PNY+ VIP    + + +      Q        S  R + 
Sbjct: 235 LIEGNYPNYRQVIPGEAKERVTLERELFLQRCASCGAGSPARSRT 279


>gi|326563091|gb|EGE13364.1| DNA polymerase III, beta subunit [Moraxella catarrhalis 12P80B1]
 gi|326571724|gb|EGE21737.1| DNA polymerase III, beta subunit [Moraxella catarrhalis BC8]
 gi|326574362|gb|EGE24305.1| DNA polymerase III, beta subunit [Moraxella catarrhalis CO72]
          Length = 385

 Score =  267 bits (682), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 196/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R+ +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRNLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  ++D   + V N ++G+A E + V Y+   +++ FN  YL  +++ +    
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               EV   L+  +S   I     D            YV+MPMR
Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384


>gi|183602669|ref|ZP_02964033.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219682501|ref|YP_002468884.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|241190068|ref|YP_002967462.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|241195474|ref|YP_002969029.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|183218087|gb|EDT88734.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis HN019]
 gi|219620151|gb|ACL28308.1| DNA polymerase III, beta subunit [Bifidobacterium animalis subsp.
           lactis AD011]
 gi|240248460|gb|ACS45400.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis Bl-04]
 gi|240250028|gb|ACS46967.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis DSM 10140]
 gi|295793055|gb|ADG32590.1| DNA polymerase III subunit beta [Bifidobacterium animalis subsp.
           lactis V9]
          Length = 374

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 92/389 (23%), Positives = 167/389 (42%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V  +   + +     +I+ +   P+   V L+A DG +++ A   EI     I A 
Sbjct: 1   MKVEVNTASFADAVAWTTSVIDARPANPILAGVKLEAADGTMQLSAFTYEISARDHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G++ V   LL DI + L          E    T + I+ G + F LQ  PESE+P 
Sbjct: 61  VDESGTVVVLGKLLADISKVLPAEKTYLSANE----TTMTITSGPATFTLQLMPESEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +          +      V +   A+A +E R  L G+      E++ L   +TD  R
Sbjct: 117 LPQLPPQIGQV-DAETFTQTVTQAAVAVAHDENRPVLTGVHMRFAGEEVTLS--STDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS--SVKVSLSESR---IHLNIESL 235
           L  A        A + +  + R +   +++I  S D   +V + L  +    I +     
Sbjct: 174 LGRASFRWTPDEADLDTAALVRGS--HLVKIARSVDERANVVIYLDPANPKLIGIANAGR 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +V+LIDGEFP    +   S   +  +   +L  A  RVS+++  R   +++  +  +L
Sbjct: 232 ISTVQLIDGEFPAVDRLYADSYPIQAVIRKEDLLGAAKRVSLVA-ERNAPIRMVFTDQQL 290

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +T    D   A E++ +  +   + + FN  YL E +  IS     +  +  ++ ++  
Sbjct: 291 TLTAGGADEASAKETLQIDLDGEDITVAFNPSYLREGLSVIS-----EPYIRMKMTTAVK 345

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            V   G+  +   + +  ++  Y+L+PMR
Sbjct: 346 PVEFNGQQDE---DGEESMSYRYLLVPMR 371


>gi|229079875|ref|ZP_04212407.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2]
 gi|228703459|gb|EEL55913.1| DNA polymerase III, beta subunit [Bacillus cereus Rock4-2]
          Length = 376

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQT----IKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   +     KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELANN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|228965621|ref|ZP_04126702.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228794029|gb|EEM41551.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 376

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EEMITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AIHLISPVR 374


>gi|319940208|ref|ZP_08014561.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV]
 gi|319810679|gb|EFW07009.1| DNA polymerase III subunit beta [Streptococcus anginosus 1_2_62CV]
          Length = 378

 Score =  266 bits (681), Expect = 3e-69,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 177/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   NFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISIKN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D   I+   +     ++ ++ G S   L+   
Sbjct: 63  EDAGLLVTSSGSILLEATFFINVVSSLPD---ITLDFKEIDQKQIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L +SVLKN++  T FA +T+E R  L G+ F + E    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + +    +V++  + +++    E+
Sbjct: 179 ATDSHRMSQKQIILEKN-GDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      +  +  NLR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++    +   + I FN  YL++ +  I+S++     V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESISGQDLTISFNPTYLIDSLKAINSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     ++  D           N   ++ P+R
Sbjct: 353 AVRPFTLKPSDD--------TENFIQLITPVR 376


>gi|229178968|ref|ZP_04306326.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W]
 gi|228604525|gb|EEK61988.1| DNA polymerase III, beta subunit [Bacillus cereus 172560W]
          Length = 376

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   I
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|25452934|sp|Q9EVE4|DPO3B_BUCRP RecName: Full=DNA polymerase III subunit beta
 gi|11320921|gb|AAG33956.1|AF197896_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 210/382 (54%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T++   ++E L    R++ +  + P+  ++L+Q  +G+L +  +  EIE+   I   
Sbjct: 1   MKFTIQNDILVENLKKITRLLIKNVSFPILENILIQIENGILSLTTTNLEIELVSKIKII 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G IT+S   + +I R L + +++    + +   ++ +S  +SN+ L +    +FP
Sbjct: 61  TKYTPGKITISGRKILNICRNLSEKSEVKMPLKEK---KMYVSCENSNYILSTLSADDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +   ++ +F ++S++LK ++E+T F+M  +++RYYLNG+     ++D  L +VATDG+
Sbjct: 118 NHQNFNHISNFHISSNILKEMIEKTEFSMGKQDVRYYLNGMLLE--KKDNFLRSVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +   I    SII+P KAV E+ R+L+++   + + +  + I + I+ L  + 
Sbjct: 176 RLAISYSKLEKDI-NFFSIIIPSKAVMELSRLLNTQVQLLNILIGTNSIRIYIKDLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++V+       +  NCT L++++ R +I++  +   +++ +  +K  +  
Sbjct: 235 QLIEGEYPDYESVLFKEKKNPIIANCTLLKKSLLRAAILAHEKFCGIEIKIEKNKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  ++ Y    ++I  N  YLL++I+NI S     + ++  L+ S SS+ I
Sbjct: 295 DNQEEETAEDLFDINYLGDTIEISINVYYLLDVINNIKS-----ENIILFLNKSKSSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             ++              Y++M
Sbjct: 350 EAENNSLNA---------YIIM 362


>gi|251781470|ref|YP_002995771.1| DNA polymerase III subunit beta [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
 gi|242390098|dbj|BAH80557.1| DNA polymerase III, beta chain [Streptococcus dysgalactiae subsp.
           equisimilis GGS_124]
          Length = 378

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 176/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  ++ L    R I  KN IPV   + +  +   + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIQALNATKRGISSKNAIPVLSTIKINVSSSDITLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   +I+  L D +      E     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGSILLEANFFINIISSLPDVSLDFKEIEQH---QVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +    A    +++P K++ E   + +    +V+V  S S+I    E 
Sbjct: 179 ATDSHRMSQRLITLDNTSAD-FDVVIPSKSLREFSAVFTDDIETVEVFFSPSQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   ++    + E+  N  +LR A++R  ++S+  +   VKL ++ +
Sbjct: 238 ISFYTRLLEGNYPDTDRLLMTQFETEVVFNTQSLRHAMERAFLISNATQNGTVKLEIAQN 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++GK  E +++   +   + I FN  YL+E +  I S     + V     S
Sbjct: 298 HISAHVNSPEVGKVNEDLDIVSQSGSDLTISFNPTYLIESLKAIKS-----ETVKIHFLS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D +         +   ++ P+R
Sbjct: 353 PVRPFTLTPGDDEE--------SFIQLITPVR 376


>gi|293400057|ref|ZP_06644203.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
 gi|291306457|gb|EFE47700.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           5_2_54FAA]
          Length = 372

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 179/391 (45%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   V + +    L  A R I   + +P    V ++A    L +  S  +I I   +   
Sbjct: 1   MYFKVSKKEFYNALSVAARAISTFSPLPAFSGVKIEATMDCLILTGSDSDISIQTKLKKS 60

Query: 59  ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A  + +IVRK+ D  +I F  E   G+   IS   + F +    
Sbjct: 61  EHCVLEIHDMGSIVIEAKYILEIVRKI-DADEIEF--EMLDGSLTKISGNTAEFRINGMR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            SE+P+    +    F ++  +LK ++ +T FA + +E R  L G+ F   E   +L  V
Sbjct: 118 ASEYPAIDFSKPNECFNVSEDILKKIILQTSFATSDKETRPVLTGVNFQCKEH--QLHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   V+I   +    +I +P K++ E+++ L   +  V++++++ +    I  
Sbjct: 176 ATDSYRLAKKTVEIEESL--NFNITIPAKSLQEVVKTLE-GEGDVEIAVNDKKAQFIIHD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K +LS  +
Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDAHDLLNAIDRASFIKNDGVSVIKFNLSEQE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             ++  + ++G + E + +  ++   ++I  N +Y+ + I  +S        V F L   
Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFSGNALEISCNGRYVFDAIKALSGSL-----VKFSLCGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                I+  D DS            +++P+R
Sbjct: 348 MKPFIIQSVDDDSV---------LQLVLPVR 369


>gi|262281646|ref|ZP_06059415.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA]
 gi|262262100|gb|EEY80797.1| DNA polymerase III subunit beta [Streptococcus sp. 2_1_36FAA]
          Length = 378

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 174/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   + +   +  + +  S  +I I   I  + 
Sbjct: 3   NFSINKNLFLQALNTTKRAISHKNAIPILSTIKIDVTNEGITLIGSNGQISIENFISINN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVTSLGSILLEATFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  ++        L + +LK+L+  T FA + +E R  L G+ F +  +   L  V
Sbjct: 120 ADQYPRIQDVPTSNPLVLETKILKDLINETAFAASLQESRPILTGVHFVLT-DHKNLKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HRL+  ++ +         +++P +++ E   + S +  +V+V  +  +I    E+
Sbjct: 179 ATDSHRLSQKKIILEKN-GDNFDVVIPSRSLREFTAVFSDEIETVEVFFANHQILFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      +    + LR A++R  ++S+  +   VKL +   
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFSTVVTFATSALRAAMERARLLSNATQNGTVKLEIEGG 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++    +   + I FN  YL+E +  ++S     ++V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDAENVSGDNLTISFNPTYLIEALKAVNS-----EKVTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   D++         +   ++ P+R
Sbjct: 353 AVRPFTLVPSDQE--------EDFIQLITPVR 376


>gi|15606912|ref|NP_214293.1| DNA polymerase III beta chain [Aquifex aeolicus VF5]
 gi|3913514|sp|O67725|DPO3B_AQUAE RecName: Full=DNA polymerase III subunit beta
 gi|2984154|gb|AAC07688.1| DNA polymerase III beta chain [Aquifex aeolicus VF5]
          Length = 363

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 99/386 (25%), Positives = 194/386 (50%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V+R ++ E+L  A    E+K  +P+  + LL A +  L ++A+  E  +  ++   
Sbjct: 1   MRVKVDREELEEVLKKARESTEKKAALPILANFLLSAKEENLIVRATDLENYLVVSVKGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + V +  LYDIV+ L         +    G ++ I+ G S + L + P  +FP 
Sbjct: 61  VEEEGEVCVHSQKLYDIVKNLNSAYVYLHTE----GEKLVITGGKSTYKLPTAPAEDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        L+ ++L N +E+  +A+A EE    L G++    E+  ++  V +DGHR
Sbjct: 117 FPEIVEGGE-TLSGNLLVNGIEKVEYAIAKEEANIALQGMYLRGYED--RIHFVGSDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMSV 239
           LA+              +++PRK++  + ++++  +D +++ S  ES  + +     ++V
Sbjct: 174 LALY----EPLGEFSKELLIPRKSLKVLKKLITGIEDVNIEKSEDESFAYFSTPEWKLAV 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL++GEFP+Y +VIP     E+      + + + R+  +S  ++  VK++LS +      
Sbjct: 230 RLLEGEFPDYMSVIPEEFSAEVLFETEEVLKVLKRLKALSEGKVFPVKITLSENLAIFEF 289

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G+A E + V Y   P +I FN KYL+E +D   S     + V F+  + +++  +
Sbjct: 290 ADPEFGEAREEIEVEYTGEPFEIGFNGKYLMEALDAYDS-----ERVWFKFTTPDTATLL 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D + +           ++MPMR+
Sbjct: 345 EAEDYEKEP-------YKCIIMPMRV 363


>gi|229097210|ref|ZP_04228172.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29]
 gi|228686021|gb|EEL39937.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-29]
          Length = 376

 Score =  266 bits (681), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 174/396 (43%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   + I   IP S
Sbjct: 1   MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQIATILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQ----IITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P +EFP+          ++ +  L  + ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLV 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I +      + IVP   + E+L++++S    V + LS+S +    
Sbjct: 175 CAATDSHRLAIRETPISSDA--KANCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V    + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ V  
Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAI-----TEEMVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|206972508|ref|ZP_03233452.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
 gi|206732532|gb|EDZ49710.1| DNA polymerase III, beta subunit [Bacillus cereus AH1134]
          Length = 376

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTIFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   I
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTI 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|160914814|ref|ZP_02077028.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991]
 gi|158433354|gb|EDP11643.1| hypothetical protein EUBDOL_00821 [Eubacterium dolichum DSM 3991]
          Length = 372

 Score =  266 bits (680), Expect = 4e-69,   Method: Composition-based stats.
 Identities = 93/391 (23%), Positives = 177/391 (45%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   + + +    L  A R I   + +P    + + A +  + +  S  ++ I   +   
Sbjct: 1   MYFKISKRNFYNALSTASRAISNFSPLPAFSGIKIDAKEDRIILTGSDSDVSIQTTLKHG 60

Query: 59  ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A  + +IVRK  D   I F   +  G+   IS   + F +    
Sbjct: 61  EDCVLEIKEMGSIVIEAKYILEIVRK-TDADIIEFEMID--GSLTKISGNSAEFRINGMK 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             E+P+    +   SF+LA  VLK ++ +T FA + +E R  L G+ FH    +  L  V
Sbjct: 118 AIEYPAIDFSKPKESFQLAEDVLKKIITQTSFATSDKETRPVLMGVNFHCEGNE--LHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   V++  ++    ++ +P K++ E+L+ L   ++ V++++++ +    I  
Sbjct: 176 ATDSYRLARKTVELEEEL--NFNVTIPSKSLQEVLKTLE-GENEVEIAVNDKKAQFIIGD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K SLS  +
Sbjct: 233 TIVQTRLIDGAYPETNRLIPLQFDYELTIDTKDLLNAIDRASFIKNDGVSVIKFSLSEAE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             ++  + ++G + E + +  +   P++I  N +Y+ E I  +         V F L   
Sbjct: 293 CVLSSKSIEVGSSTEVLSSASFEGQPLEISCNGRYVFEAIRALGGSL-----VKFSLCGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                I   + D             +++P+R
Sbjct: 348 MKPFVITSLEDDKI---------LQLVLPVR 369


>gi|11320903|gb|AAG33947.1|AF197887_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 99/382 (25%), Positives = 201/382 (52%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNGVLSLTATNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + G+ TVS+  L DI R   + + ++   +     +++I    S + L++ P   FP
Sbjct: 61  THYISGNTTVSSQKLLDICRHSLNSSNMNIELD---ANKIHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S+++K ++E+THF+M  +++RYYLNG+   +      L  VATDG+
Sbjct: 118 NHNHFHHISEFYIDSNIIKEMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LHMVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +    +  Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  + 
Sbjct: 176 RLGITHTLLKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FPNY +V     +  + +NC  L+Q++ R +I++  +   V++ + +++  +  
Sbjct: 236 QLIEGKFPNYDSVFLTKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + +   L++SN+S+ I
Sbjct: 296 DNQEEETAEDTFNINYIGPSIKISINVYYMLDILNSISS-----ENIFLFLNNSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  Y++M
Sbjct: 351 EAE---------NDTSTIYIVM 363


>gi|281424379|ref|ZP_06255292.1| DNA polymerase III, beta subunit [Prevotella oris F0302]
 gi|281401648|gb|EFB32479.1| DNA polymerase III, beta subunit [Prevotella oris F0302]
          Length = 373

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 103/386 (26%), Positives = 178/386 (46%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  S +   L    ++I  KN++P+    L + ++  L+I AS  E  +T  +   
Sbjct: 1   MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  V    + D V++L +           L  ++   +G  NF  Q     E+P
Sbjct: 61  ECDGEGSFAVPNRTILDAVKELPEQPLSFDVDIEALTIKILYQNGMYNFTAQ--NADEYP 118

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+      +   + S+ L + + R+ FA AT+E+R  +NGI+F +  +   L  VATDG
Sbjct: 119 HTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   D   +     S I+P+K    +  +LS  D+ V +   +    +      ++
Sbjct: 177 HKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQLT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  + + KL ++
Sbjct: 236 CRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEVS 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E +   YN   M I F    L +I++N+ S     DEV+F+L   + + 
Sbjct: 295 SEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDS-----DEVIFQLADPSRAG 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I    +          N   ++MPM
Sbjct: 350 VIVPAQQP------ENANILMLIMPM 369


>gi|325269039|ref|ZP_08135660.1| DNA-directed DNA polymerase III beta subunit [Prevotella
           multiformis DSM 16608]
 gi|324988660|gb|EGC20622.1| DNA-directed DNA polymerase III beta subunit [Prevotella
           multiformis DSM 16608]
          Length = 374

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 94/386 (24%), Positives = 176/386 (45%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +  + +   L    R+I  KN++P+    L + ++  L I AS  E  + G +   
Sbjct: 1   MRFNLSSTALSSRLLTLSRVINSKNSLPILDCFLFEIHNRQLTITASDSENVMRGTLNLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G   V+ H + D V++L +          E+   V   +G  NF +      E+P
Sbjct: 61  DCEGEGDFAVNNHTILDAVKELPEQPLALAVNMEEMKIYVTYQNGSYNFPI--MSAEEYP 118

Query: 120 ST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                 E   +  + ++ L + + R+ FA A +E+R  +NG++F + E+   L  VA+DG
Sbjct: 119 RVQPMSESATTVTIGAAKLSDSLTRSLFATAQDELRPVMNGVYFDLKEDG--LAVVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V       +     S ++P+K    +  +LS     V +   +    ++    +++
Sbjct: 177 HKL-VRNKIFTVKSETPASFVLPKKPATLLKNVLSKDGGDVIIRFDDRSAEVSFAEGNLA 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G++PNY +VIP  N   + ++  +L  A+ RV   +S   Q ++  +SS  L + 
Sbjct: 236 CRLIEGKYPNYNSVIPLDNPNLVTIDRKSLIGALRRVLPFASDSSQLIRFYVSSGLLELN 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y   PM I F    +L+I++N+ S     D+VV +L   + + 
Sbjct: 296 AEDIDFATSAKESVTCEYGGNPMSIGFKGSSMLDILNNLES-----DDVVIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 VIVPA------MQPESEDILMLIMPM 370


>gi|299140891|ref|ZP_07034029.1| DNA polymerase III, beta subunit [Prevotella oris C735]
 gi|298577857|gb|EFI49725.1| DNA polymerase III, beta subunit [Prevotella oris C735]
          Length = 373

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 102/386 (26%), Positives = 177/386 (45%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  S +   L    ++I  KN++P+    L + ++  L+I AS  E  +T  +   
Sbjct: 1   MRFTLSSSALNARLQSLAKVINSKNSLPILDSFLFEVSNSGLKITASDSENVMTSLVALS 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  V    + D V++L +           L  ++   +G  NF  Q     E+P
Sbjct: 61  ECDGEGSFAVPNRTILDAVKELPEQPLSFDVDIEALTIKILYQNGMYNFTAQ--NADEYP 118

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            T+      +   + S+ L + + R+ FA AT+E+R  +NGI+F +  +   L  VATDG
Sbjct: 119 HTQAVPDGANVITMTSASLVSNITRSLFATATDELRPVMNGIYFDLTTD--YLAIVATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   D   +     S I+P+K    +  +LS  D+ V +   +    +      ++
Sbjct: 177 HKL-VRNQDYTVKSENAASFILPKKPATLLKNVLSKDDNEVVIRFDDRSTEIRFAEGQLT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N   + ++  +L  A+ RV   +S   Q V+  + + KL ++
Sbjct: 236 CRLIEGNYPNYNSVIP-QNPHNMNIDRKSLIGALRRVLPFASESSQLVRFRIEAGKLEVS 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E +   YN   M I F    L +I++N+       DEV+F+L   + + 
Sbjct: 295 SEDIDFATSAKEQIICDYNGPQMSIGFKGSSLQDILNNLDG-----DEVIFQLADPSRAG 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I    +          N   ++MPM
Sbjct: 350 VIVPAQQP------ENANILMLIMPM 369


>gi|332876761|ref|ZP_08444519.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
 gi|332685320|gb|EGJ58159.1| DNA polymerase III, beta subunit [Capnocytophaga sp. oral taxon 329
           str. F0087]
          Length = 374

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 174/372 (46%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+  V  S +   L    R+I  KNT+P+    L +  D +L I AS  E  +   +   
Sbjct: 1   MRFIVSSSALFNRLQTIGRVINSKNTLPILDCFLFEIQDNILTITASDSETTLITNLELV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D      ++A  + D ++++ +         + +    N  +G   F +      E+P
Sbjct: 61  ESDANARFCINAKTIQDSMKEIAEQPLSFDINPDNMEITANYQNG--RFNIVGQSADEYP 118

Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                +E + +  + +  + N + R  FA A +E+R  +NG++F I  ++L    V+TDG
Sbjct: 119 EMNLPQEDMNALIIPAETMLNGINRCLFATADDELRPVMNGVYFDIQADNLTF--VSTDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +  +  + I+P+K    +  +L  +   V +  +E   ++ +ES  + 
Sbjct: 177 HKL-VRNRNYGIKDHQPAAFILPKKPATILKNLLPKESDDVTLKFNERNAYITMESSRLI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N   + V+   L  A+ RV I S+     +KL L S++L ++
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPYRVTVDRLTLLSALKRVLIFSNQSSALIKLHLESNQLVVS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E +   Y + PM+I F   +L++I++N+       + V+  L   + + 
Sbjct: 296 GQDIDYSTSAEERVPCEYGDSPMNIGFKGTFLIDILNNMGG-----ENVIIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            I   +++   +
Sbjct: 351 VIVPAEQEENED 362


>gi|326578062|gb|EGE27922.1| DNA polymerase III, beta subunit [Moraxella catarrhalis O35E]
          Length = 385

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 111/404 (27%), Positives = 195/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   GS T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGSTTLPAEMFFSVCKSLPEETVVIDAPED--TTRCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTAVPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKNVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  ++D   + V N ++G+A E + V Y+   +++ FN  YL  +++ +    
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               EV   L+  +S   I     D            YV+MPMR
Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384


>gi|301054217|ref|YP_003792428.1| DNA polymerase III subunit beta [Bacillus anthracis CI]
 gi|300376386|gb|ADK05290.1| DNA polymerase III subunit beta [Bacillus cereus biovar anthracis
           str. CI]
          Length = 376

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I  G+    L  
Sbjct: 61  IDDEQITTILQVGTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSGEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FPVNEFPNVPQIDDHTEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            + ++  RLI+G++PN   +IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISTLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEIV 292

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   + ++ +   +GK  E+  +     E  ++I F+ ++++E +  I      ++ +  
Sbjct: 293 NESTIQISSNASQIGKISETQQIDGLQGEKQLNISFDGRFMVEALKAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +           +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSAV---------VHLISPVR 374


>gi|224541289|ref|ZP_03681828.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM
           15897]
 gi|224525793|gb|EEF94898.1| hypothetical protein CATMIT_00449 [Catenibacterium mitsuokai DSM
           15897]
          Length = 367

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 95/387 (24%), Positives = 178/387 (45%), Gaps = 25/387 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   + R  +L+ L    R +  K+ +P+   +     +  L + AS  +I I   I   
Sbjct: 1   MDFNINRLVLLDALTKVSRAVSLKSPLPILTGIKFDLLEDGLVLTASDSDISIQTTINEG 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             ++  GS+ +S+  + +I+RK+          +   GT   I+   S F L      +F
Sbjct: 61  IIINQTGSVVLSSKYILEIIRKIDGDTVHIQVVD---GTLTRITSESSLFDLNGSKSFDF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +    F + S   K ++E+T FA + +E R  L G+ F +  +  KL  +ATD 
Sbjct: 118 PRIDLNKNGKHFSMKSYEFKKIIEKTLFATSEQETRPVLTGVNFKV--DQHKLVCIATDS 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA     I   I    +I++P+K++ +I+ I+  KD  + + +S+ ++   I    + 
Sbjct: 176 YRLAQVSQPIDDDI--QFNIVIPKKSLNQIIHIIE-KDEMIDLYVSDRKVLFVIGQYLVL 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLIDG +PN   ++       + +N + L  A+ R S++S  +   VKL++S D+  ++
Sbjct: 233 TRLIDGTYPNTSRLVEDQGSYTMSINSSALLGAISRASLLSDEQSNIVKLTMSPDENILS 292

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + ++G   E++   +Y   PM I F+ KYL + I +I +     + +  R        
Sbjct: 293 SYSQEIGSVEENLTKAFYKGEPMTISFSAKYLADAIRSIGT-----ETIQLRFTEKMRPF 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I G D+          +   V++P+R
Sbjct: 348 QITGLDE---------SDNIQVVLPVR 365


>gi|229070157|ref|ZP_04203421.1| DNA polymerase III, beta subunit [Bacillus cereus F65185]
 gi|228712975|gb|EEL64886.1| DNA polymerase III, beta subunit [Bacillus cereus F65185]
          Length = 376

 Score =  266 bits (680), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKVGTIVVPAKYFIEIIKKMPSDIAIKSKNEQT----IKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +           +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------TVHLISPVR 374


>gi|319760165|ref|YP_004124103.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str.
           BVAF]
 gi|318038879|gb|ADV33429.1| DNA polymerase III subunit beta [Candidatus Blochmannia vafer str.
           BVAF]
          Length = 369

 Score =  265 bits (679), Expect = 5e-69,   Method: Composition-based stats.
 Identities = 124/387 (32%), Positives = 208/387 (53%), Gaps = 22/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   VER  +  +L     ++  +  +P+  H+LL+ N+  L +  +  E+EI   +   
Sbjct: 1   MTFCVERQSLYPILQKIISVVSNRPRLPILKHILLEINNNCLILIVTNLEVEIIAHVFLE 60

Query: 61  VDVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                 S+TVS   LY+I R L   A+I    EN    ++ ++ G S+F L + P S+FP
Sbjct: 61  KRYVFRSVTVSGIKLYEIFRNLSACAKIFIKLEN---NKLLVNSGCSSFVLSTLPASDFP 117

Query: 120 STKEEEYVYSFE--LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           + +  +    F   ++  + K ++E T FAM   + R+YLNGIFF I ++ +++  VATD
Sbjct: 118 NVETLKVDCEFNVIISQLMFKKIIELTQFAMGYRDARHYLNGIFFEIEDKVVRV--VATD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           GHRLA+ E+     ++   SII+PR+ + EILR+L+   + VK+ + ++RI + I++  +
Sbjct: 176 GHRLAMCEITADT-LSSSHSIIIPRQGIVEILRLLNYTKNLVKIKIYDNRICVKIDNYIV 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LID  FPNY+ V+  +      V+   L+QA+ RVSI+S+ +++ V  +L  D+L +
Sbjct: 235 HSKLIDSVFPNYKRVLTNNLKLFFEVDRIILKQALKRVSILSNEKLRVVHFNLMHDQLKI 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T +N     + E + + Y+   + I FN  Y+L+II+ I S       + F L    SSV
Sbjct: 295 TANNFKQETSEEILEILYDNENIGISFNVDYILDIINVIDSKT-----LKFFLTDPVSSV 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I G  K           A YV+MP+R
Sbjct: 350 KIEGIPK--------FYEATYVVMPVR 368


>gi|11320905|gb|AAG33948.1|AF197888_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/382 (25%), Positives = 198/382 (51%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     +  L    R + +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIHNLQKINRFVTKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITVS+  + DI R   + + I          +++I    S + L + P   FP
Sbjct: 61  KNYTSGHITVSSRKILDICRNSLNSSNIKIEL---CDNKIHIISDKSQYILTTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S+ LK ++E+THF+M  +++RYYLNG+   +      LC VATDG+
Sbjct: 118 NYHHFHHIAEFCIDSNTLKEMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LCMVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL + +  +  Q  +  SI++ R+ + E+ ++L+    S+K+ + ++ I + IE    + 
Sbjct: 176 RLGITQTLLTTQKIESFSIVMTRRGIIELYKLLNVSRQSIKILIGKNSIRIYIEQFIFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FPNY ++     +  + +NC  L++++ R +I++  +   V++ + +++     
Sbjct: 236 QLIEGKFPNYDSLFLTKKNNGIILNCMLLKKSLLRAAILTHEKFCGVEIHIQNNQFKALS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ I
Sbjct: 296 DNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  Y++M
Sbjct: 351 EAE---------NDASTIYIVM 363


>gi|229030374|ref|ZP_04186418.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
 gi|228730947|gb|EEL81885.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
          Length = 376

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 175/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + +  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAVSAKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            +          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  NEDDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQ----IITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 LPAYEFPNVPLIDGHTKIQVETERLIEVFKQTVFAVAKNESRPVLTGVHLELDYN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD HRLA+ E  I   +    S IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CVATDSHRLAIRETMISTDV--KASCIVPSATISELLKLMTSNSEFVYIYLSESYIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  ++IP      + ++   + Q VDR ++++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNDFQTVINIDRKKILQGVDRSNLLASDWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++L+ +  I      ++ V  
Sbjct: 293 NESAIKISSNASQIGKISETQQVDTIQGEKQLNISFDGRFMLDALKAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I            ++  A +++ P+R
Sbjct: 348 SFSGSMRPILIEA---------GSQSAAIHLISPVR 374


>gi|169335350|ref|ZP_02862543.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM
           17244]
 gi|169258088|gb|EDS72054.1| hypothetical protein ANASTE_01762 [Anaerofustis stercorihominis DSM
           17244]
          Length = 368

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 97/387 (25%), Positives = 188/387 (48%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V+R++ L+ L    +    +N       +LL++ D +L + A+  EI+I+  I A 
Sbjct: 1   MNIKVDRNEFLKALITVSKATTLRNVGS-LEGILLESYDDVLSLYATNKEIQISTIIDAK 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + +++ +L DIVR   +G       EN     + ++  +S F + +     FP+
Sbjct: 60  VIREGKLLINSRILSDIVRSFDNGEVEIDADEN---NNIKLTCLNSKFNITAMDHRTFPN 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDGH 179
            +        ++ + V++N+++ T FA AT +     L GI    N+ED+K   VA DG 
Sbjct: 117 KEVYNINDFIKMDNHVIRNMIKETSFACATSDSVSPILTGILIENNDEDIKF--VAIDGF 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+A+       +       +VP   + E+ +IL++ D  V +++++ +   NI    +  
Sbjct: 175 RMAIRSEQSKERYMNNIKCVVPSSTLNELNKILTNYDDDVFLNINDKKFVANIGRTQLVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
            L+ G+F +Y N++P  +   +++N   L  A +R +I+S   R   + L  + + L +T
Sbjct: 235 SLLQGQFIDYGNLLPKESKTIVKMNKNELLSACERAAIISDEGRAHLITLHFTDNNLLLT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +   G   E++N+  +   +DI FN +Y+++ +  I      D++V+   +SSNS   
Sbjct: 295 SKSA-YGNVEENININLSGEDLDISFNSRYVIDALKVIE-----DEKVILEFNSSNSPCL 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I+           +     Y++MP+RI
Sbjct: 349 IKPV---------SSNKFTYLIMPVRI 366


>gi|319440838|ref|ZP_07989994.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM
           44702]
          Length = 366

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 144/385 (37%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T  + D+   L      I  K T P+   VL+   D      A     ++   IP  
Sbjct: 1   MKTTFAKHDLARALELTKPAIPSKPTQPILAGVLITVGDDTATFDAFDQSSQVHTTIPCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + +    L+D+V KL D           +G+    + G   F L      ++P 
Sbjct: 61  TSEPGQVLLPHRTLHDVVAKLPDKPITIT----HMGSAAQFTCGPRTFELPPMTLDDYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        +  S L   +     A   ++    L GI   ++  D  L   ATD  R
Sbjct: 117 LPDMPPAVG-TIDWSDLAAAIREVGAAAGRDDTLPMLTGI--KVDSHDGALTLAATDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA   +           +++P + +  + R  ++    V +   + R+   +      +R
Sbjct: 174 LAHTTLPWDGDDLD---MLIPARDILTLAR--TTWHGDVTIHHDQRRLGFTLGDTRTILR 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LID +FP ++ +IP  +D  +R++   +  AV   S+++    Q V LS++S ++ +   
Sbjct: 229 LIDADFPKWRPLIPKDSDTTIRIDRKTMADAVKFTSVLAGDTGQVV-LSITSGQVTIASK 287

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
               G   E +        ++I F  +YLL+ +         D   +           + 
Sbjct: 288 TAQDGAGEEVIACDTVGNELNIAFTSRYLLDALA-------GDGTALMTFTQPGRPAMVW 340

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
             D   +  K    +  ++LMP+R+
Sbjct: 341 P-DLPCEEGKVPDADRGHLLMPVRL 364


>gi|6606558|gb|AAF19208.1|AF213933_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  265 bits (679), Expect = 6e-69,   Method: Composition-based stats.
 Identities = 108/385 (28%), Positives = 208/385 (54%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++     + L    R+I + +T+P+  ++L+  N+G++ + A+  E E+   I  S
Sbjct: 1   MKFNIKNKIFTQHLKKINRLITKNSTLPILENILITVNNGIISLTATNLETELISNIEIS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I R   + + I      E   +++IS  +SN+ L + P   FP
Sbjct: 61  KTYTPGSITVSGQKLLNICRNSSELSDIKISLNKE---KIHISLENSNYILNTLPAENFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    ++V  F ++S +LK ++E+THF+M  +++RYYLNG+     +    L  VATDG+
Sbjct: 118 NHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLE--KNKTSLYTVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +A+  +   +  + S I+PRK + E+ ++L+ +   + V + ++ I + IE L  +V
Sbjct: 176 RLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNIKIYIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++++       + +N   L+Q++ RVS++S      V++ ++++K  +  
Sbjct: 235 QLIEGEYPDYKSILSRKKQHPIILNNKILKQSLLRVSVLSDKNFCGVEIYITNNKFQVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N    KA +S  + Y    ++I  N  Y++E+++ ISS       +    + SN+S+ I
Sbjct: 295 NNQHEEKAEDSFKINYYGENIEISINVYYIIEVLNVISSK-----NIFIFFNESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++  S           YV+M +R
Sbjct: 350 ESEEDHSL---------LYVIMLLR 365


>gi|6606554|gb|AAF19206.1|AF213931_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  265 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 109/385 (28%), Positives = 214/385 (55%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R+I + +T+P+  ++L+  N+G++ + A   EIE+   I  S
Sbjct: 1   MKFNIINKIFTQHLKKVNRLISKNSTLPILENILITVNNGIISLTAKNLEIELISNIEIS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I +   + ++I   K N    +++I   +SN+ L + P   FP
Sbjct: 61  KTHTPGSITVSGQKLLNICQNSSESSEI---KINLNKDKMHIISDNSNYILTTLPSDNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F ++S +LK ++E+T F+M  +++RYYLNGI     +    L AVATDG+
Sbjct: 118 NHNNFHHISEFFISSEILKKMIEKTQFSMGKQDVRYYLNGILLE--KNKTALYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +A+  +   +  + S I+PR+ + E+ ++L+ K   + V + ++ I +NIE L  +V
Sbjct: 176 RLGIAKTFLNENV-CIFSAIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRINIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++V+    +  + +N   L+Q++ RV+++S      V++ ++++K  ++ 
Sbjct: 235 QLIEGEYPDYKSVLLRKKNHPIILNNKILKQSLLRVAVLSDKNFCGVEIHITNNKFKVSS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N    KA +S  + Y    ++I  N  Y++E+++ I+S+      +   L+ SN+S+ I
Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSN-----NIFIFLNESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++ +S         + YV+M +R
Sbjct: 350 ESEEDNS---------SLYVIMLLR 365


>gi|296112232|ref|YP_003626170.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4]
 gi|295919926|gb|ADG60277.1| DNA polymerase III beta subunit [Moraxella catarrhalis RH4]
          Length = 385

 Score =  265 bits (679), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 110/404 (27%), Positives = 194/404 (48%), Gaps = 40/404 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ R  +L+ +    +  ++++   +  ++ L   +G L + AS  E+E+T      
Sbjct: 1   MKLSINRDLLLKAINLVVKAADKRHRFAILANIKLVLEEGFLTLTASDLELELTTRFALP 60

Query: 61  VDVC---GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
            D C   G  T+ A + + + + L +   +    E+   T   I+ G   + L   P  +
Sbjct: 61  KDGCIQAGGTTLPAEMFFSVCKSLPEEVVVIDAPED--TTHCIITSGTGRYTLSCLPADD 118

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+      +   +++   L +L+  T FAMAT+++RYYL G+ F I E    L AVATD
Sbjct: 119 FPTIGTATPLSVIKISQGNLSSLIHHTRFAMATQDVRYYLTGMLFDIGEN--TLTAVATD 176

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL----SSKDSSVKVSLSESRIHLNIE 233
           GHRLAVA   ++ +      +I+P KAV E+ R+L     + D S  V L      L + 
Sbjct: 177 GHRLAVAHR-LLNETYAPNQVIIPGKAVAELERLLIELAKTVDDSNIVELGFDAEFLQVG 235

Query: 234 ------------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
                       ++ +S RLI+G+FP+Y+ VIP +NDK +  N       + R+S++++ 
Sbjct: 236 LVLKDEDTDNEITVKLSARLIEGKFPDYRRVIPANNDKIVLFNKDEAVDVLRRISVLNTK 295

Query: 282 RIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
               V ++  ++D   + V N ++G+A E + V Y+   +++ FN  YL  +++ +    
Sbjct: 296 EEPGVLMNFDTTDFCKVGVTNRNLGEAEEMLGVNYSGDAIELTFNEAYLRAVLNVLEG-- 353

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               EV   L+  +S   I     D            YV+MPMR
Sbjct: 354 ----EVCLELNQPSSPALIYQVGDDLH---------RYVIMPMR 384


>gi|313900815|ref|ZP_07834305.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2]
 gi|312954235|gb|EFR35913.1| DNA polymerase III, beta subunit [Clostridium sp. HGF2]
          Length = 372

 Score =  265 bits (678), Expect = 7e-69,   Method: Composition-based stats.
 Identities = 95/391 (24%), Positives = 176/391 (45%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   V + +    L  A R I   + +P    + + A +  L +  S  ++ I   +   
Sbjct: 1   MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60

Query: 59  ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A  + +IVRK+ D  +I F   +  G+   IS   + F +    
Sbjct: 61  EECVLEIRDMGSIVIEAKYILEIVRKI-DADEIEFEMID--GSLTKISGNTAEFRINGMR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P+    +    F L    LK ++ +T FA + +E R  L G+ FH       L  V
Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHCEGN--TLHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   +DI   +    +I +P K++ E+++ L   +  V++++++ +    I  
Sbjct: 176 ATDSYRLAKKTIDISESL--NFNITIPAKSLSEVVKTLE-GEGEVEIAVNDKKAQFIIHD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K SLS  +
Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             ++  + ++G + E + +  +    ++I  N +Y+ + I  +S        V FRL   
Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFTGSSLEISCNGRYVFDAIKALSGSL-----VTFRLCGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                I+  D D         N   +++P+R
Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369


>gi|312865826|ref|ZP_07726048.1| DNA polymerase III, beta subunit [Streptococcus downei F0415]
 gi|311098701|gb|EFQ56923.1| DNA polymerase III, beta subunit [Streptococcus downei F0415]
          Length = 378

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 92/392 (23%), Positives = 178/392 (45%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  ++ L    R I  KN IP+   + +  +   + +  S  +I I  +I  S 
Sbjct: 3   NFSINKAFFIQALNTTKRAISSKNAIPILSSLKIDVHSTGITLTGSNGQISIENSIATSD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A+   +IV  L D   +S   +    ++V ++ G S   L+   
Sbjct: 63  ENAGLLITETGSILLEANFFINIVSSLPD---VSLDFKEIEHSQVLLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E          + VLK L+  T FA +T+E R  L GI   + +      AV
Sbjct: 120 VEQYPRLQEVATSNPLIFDTKVLKTLIAETAFAASTQESRPILTGIHLVLTDNKN-FKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ I+        +++P +++ E + + +    +V+V LS S+I    ES
Sbjct: 179 ATDSHRMSQRKL-ILENSGDNFDVVLPSRSLREFVAVFTDDIETVEVFLSGSQILFRSES 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   R+++G +P+   ++    + E+  +  NLR A++R  ++S+  +   VKL +   
Sbjct: 238 ISFYARMLEGAYPDTDRLLVSDFETEILFDTNNLRSAMERAHLISNATQNGTVKLEIVDG 297

Query: 294 KLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           K+   V++P++GK  E ++    +   + I FN  YL+E +  + S     + V  R  S
Sbjct: 298 KVSAHVNSPEVGKVNEEIDTLEIDGSDLTISFNPTYLIEALKALKS-----ETVRIRFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +   D           N   ++ P+R
Sbjct: 353 PVRPFTLTPGDD--------GENFIQLITPVR 376


>gi|291457887|ref|ZP_06597277.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
 gi|291419431|gb|EFE93150.1| DNA polymerase III, beta subunit [Oribacterium sp. oral taxon 078
           str. F0262]
          Length = 373

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 87/384 (22%), Positives = 173/384 (45%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ++  ++  +  A + +  K+T+P+   +LL A++G + +  +  E  I       
Sbjct: 1   MKLQFQKDALISSINIAIKAVPSKSTMPIMECLLLDASNGKICLVGNDTEFGIETVCRGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + + A L  +I++KL    ++S   E++      I    S F +     +EF  
Sbjct: 61  ILEAGKVALDARLFSEIIKKLPQDNELSVLIESDEHFVTTIRCEKSVFKISGKDGNEFTM 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   S  L+   LK+ + +T F++A  E    + G F  +  +   +C  + DGHR
Sbjct: 121 IPGIDRSNSVSLSQFTLKSFINQTIFSVALNESNKKMTGEFLEVKGDLFSVC--SLDGHR 178

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++    +     +M + IVP KA+ EI RILS      V +  +++ I    +   +  
Sbjct: 179 ISIRRTQLKESCPEMKA-IVPGKALIEISRILSGGLKDEVMIYFTKNHILFEFDDTLVLS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDGE+ +   ++    D ++ VN   L  +++R +I      +   +   SD L   +
Sbjct: 238 RLIDGEYFHVAQMLSEDYDTKITVNRRELLDSIERSTIFVQDNEKQPLILRISDGLLSLL 297

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + D+G+    +++  +   + I FN +YL + + NI S     + V        S +FI
Sbjct: 298 ISSDLGRMDAEVSIEKSGNDLMIGFNPRYLADALRNIDS-----ESVSIYFTIPRSPLFI 352

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
           R          D++    Y+++P+
Sbjct: 353 R----------DDEETYTYMILPV 366


>gi|306821800|ref|ZP_07455395.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
 gi|304550167|gb|EFM38163.1| DNA-directed DNA polymerase III beta subunit [Eubacterium yurii
           subsp. margaretiae ATCC 43715]
          Length = 396

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 81/385 (21%), Positives = 180/385 (46%), Gaps = 20/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V + D+ + +    + +  KNT+ +   +  +  +G L +  +  E+ I  +IP  
Sbjct: 30  MKFKVNQRDLSKAISVVQKAVATKNTMEILKGIYFEIEEGNLLLTTNNMEVGIQTSIPCE 89

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I + A ++ DIVRKL +      F   +    + +   +S F ++     +FP 
Sbjct: 90  VYEEGKIVIDAKIISDIVRKLPNDTI--HFTSIDENDLIEVRCQNSKFNIKYIRCEDFPM 147

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +  +  ++ +   KN++ +T++A+++ +        FF I++    + +V  D  R
Sbjct: 148 PAYIDERFFVKIEADDFKNMILKTNYAISSNDPNQIYMCHFFKIDKNKFTMFSV--DNFR 205

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
             + E +         ++I+    + +I + +      +K +  +  I + I+   ++  
Sbjct: 206 FVIMEKEFEDISFDEKNLIINGSILTDIAKTIEDGVEFIKFAFDDKHICVIIDDTIITSN 265

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ G F +Y+++IP +    + V  ++L+ A+DRVS++S+   + +KL      + +T  
Sbjct: 266 LVTGNFIDYESIIPRNEKSTVTVRSSDLKSAIDRVSLLSN--NKLIKLESKDFMMNITSR 323

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N  +G A E +++       +I FN ++LL+I+ N+      D+ +  ++ +S S   I 
Sbjct: 324 NDQVGNANEIVDIKLEGENFEIAFNCEFLLDILKNVD-----DEYITMKITNSLSPCKIT 378

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +         N  +V++P+RI
Sbjct: 379 SESDE---------NYIHVILPVRI 394



 Score = 50.2 bits (119), Expect = 6e-04,   Method: Composition-based stats.
 Identities = 47/281 (16%), Positives = 103/281 (36%), Gaps = 20/281 (7%)

Query: 108 FYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
           F    F +  +     +E    F++    L   +     A+AT+     L GI+F I E 
Sbjct: 10  FKFGIFYKLHYIKFLTQEVDMKFKVNQRDLSKAISVVQKAVATKNTMEILKGIYFEIEEG 69

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           +L L     +       +  I  ++ +   I++  K + +I+R L + D+    S+ E+ 
Sbjct: 70  NLLLTTNNME----VGIQTSIPCEVYEEGKIVIDAKIISDIVRKLPN-DTIHFTSIDEND 124

Query: 228 -IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV--SIMSSVRIQ 284
            I +  ++   +++ I  E       I       +++   + +  + +   +I S+   Q
Sbjct: 125 LIEVRCQNSKFNIKYIRCEDFPMPAYIDERF--FVKIEADDFKNMILKTNYAISSNDPNQ 182

Query: 285 AVK---LSLSSDKLCMTVDNP--DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
                   +  +K  M   +    +    E  ++ ++E  + I  N   L +I   I   
Sbjct: 183 IYMCHFFKIDKNKFTMFSVDNFRFVIMEKEFEDISFDEKNLII--NGSILTDIAKTIED- 239

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVL 380
               + + F  D  +  V I      S     N ++   ++
Sbjct: 240 --GVEFIKFAFDDKHICVIIDDTIITSNLVTGNFIDYESII 278


>gi|148927270|ref|ZP_01810840.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp.
           GTL1]
 gi|147887329|gb|EDK72783.1| DNA polymerase III, beta subunit [candidate division TM7 genomosp.
           GTL1]
          Length = 366

 Score =  265 bits (678), Expect = 8e-69,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 168/388 (43%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV + ++ + L    R+   K  +P+  ++LL+ ++  L + A+  EI IT  I A 
Sbjct: 1   MKLTVTQENLTKALNAVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV A L+ + +  L  G      +    G  ++I+ G  +  +      EFP 
Sbjct: 61  VAQNGAITVPARLMAEFISNLPKGNVELSVE----GAHLHIAAGAYSSTINGMEAEEFPE 116

Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                   +   E+ + V+K  V +T    +++  R +L G++ H  E D  L   ATDG
Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGD--LYFAATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL+  ++  + +  K    IVP   + ++LR+L     +V++   E+++   +  + ++
Sbjct: 175 YRLSERKIGAMKEDLKX---IVPASTLQDVLRVLPDDSDAVELLFDETQVRFRMGDVEVT 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLC 296
            RLIDG+F +Y+ +IP   D    +      +     S+ +     ++ L        L 
Sbjct: 232 SRLIDGQFVDYRQLIPKGADIASVLRKEEFSRITKIASLFARESGGSITLKTDKEKGTLA 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +      +G+         +     +  N +YLLE +  I         + FR     S 
Sbjct: 292 IHSIASQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSS-----ITFRFSGKLSP 345

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +   D ++           +++MP++
Sbjct: 346 CRLTATDDEA--------TYQHIIMPLK 365


>gi|309774991|ref|ZP_07670007.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308917245|gb|EFP62969.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 372

 Score =  265 bits (677), Expect = 9e-69,   Method: Composition-based stats.
 Identities = 96/391 (24%), Positives = 177/391 (45%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   V + +    L  A R I   + +P    + + A +  L +  S  ++ I   +   
Sbjct: 1   MYFKVSKKEFYNALSVASRAISTFSPLPAFSGIKIDAKEDCLILTGSDSDVSIQTKLTKS 60

Query: 59  ----ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A  + +IVRK+ D  +I F   +  G+   IS   + F +    
Sbjct: 61  EECVLEIRDMGSIVIEAKYILEIVRKI-DAEEIEFEMID--GSLTKISGNTAEFRINGMR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P+    +    F L    LK ++ +T FA + +E R  L G+ FH       L  V
Sbjct: 118 ANEYPAIDFSKPKECFALKEETLKKVILQTSFATSDKETRPVLTGVNFHCEGN--TLHCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   +DI    A   +I +P K++ E+++ L   +  V++++++ +    I  
Sbjct: 176 ATDSYRLAKKTIDIAE--ALNFNITIPAKSLSEVVKTLE-GEGEVEIAVNDKKAQFIIHD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG +P    +IP   D EL ++  +L  A+DR S + +  +  +K SLS  +
Sbjct: 233 TIVQTRLIDGVYPETSRLIPLQFDYELTIDSRDLLNAIDRASFIKNDGVSVIKFSLSEQE 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             ++  + ++G + E + +  ++   ++I  N +Y+ + I  +S        V FRL   
Sbjct: 293 CVLSSKSVEVGSSTEVLSSASFHGNSLEISCNGRYVFDAIKALSGSL-----VTFRLCGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                I+  D D         N   +++P+R
Sbjct: 348 MKPFIIKSVDDD---------NVLQLVLPVR 369


>gi|229173346|ref|ZP_04300890.1| DNA polymerase III, beta subunit [Bacillus cereus MM3]
 gi|228610040|gb|EEK67318.1| DNA polymerase III, beta subunit [Bacillus cereus MM3]
          Length = 376

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 170/396 (42%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + +  +   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVNKAISTKAIIPILSGIKITVDQSGITLIASDSNIFIEKLIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
            +          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  TEGDQITTIVKAGTIVVPAKYFIEIIKKMPSDVSIKSTNEQ----IITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P  EFP+    +     +  +  L  + ++T FA+A  E R  L G+   +  E  KL 
Sbjct: 117 LPAYEFPNVPLIDDHAKIQAETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--EHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I  ++    S IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETIISTEV--KASCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  ++IP      + V+   + Q VDR S++SS      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISSLIPNEFQTVINVDRKRILQGVDRSSLLSSEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +  + ++ +   +GK  E+  +     E  ++I F+ +++++ +  I      ++ V  
Sbjct: 293 DESTIKISSNASQIGKISETQQIDEIQGEKQLNISFDGRFMMDALKAIK-----EETVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I      +         A +++ P+R
Sbjct: 348 SFSGSMRPILIEAGTPSA---------AVHLISPVR 374


>gi|228953017|ref|ZP_04115078.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
 gi|228806635|gb|EEM53193.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           kurstaki str. T03a001]
          Length = 376

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 90/396 (22%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G++ V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKVGTMVVPAKYFIEIIKKMPSDIAIKSKNEQT----IKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|229190784|ref|ZP_04317777.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876]
 gi|228592654|gb|EEK50480.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10876]
          Length = 376

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 178/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|293374956|ref|ZP_06621252.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909]
 gi|325844316|ref|ZP_08168092.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1]
 gi|292646433|gb|EFF64447.1| DNA polymerase III, beta subunit [Turicibacter sanguinis PC909]
 gi|325489183|gb|EGC91565.1| DNA polymerase III, beta subunit [Turicibacter sp. HGF1]
          Length = 378

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 92/397 (23%), Positives = 181/397 (45%), Gaps = 32/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V+R  +L  L +  + I  K  +PV   +    +D  L +  S  +I I   +P  
Sbjct: 1   MKIKVDRQLLLTQLSYISKAIPTKTPLPVLTGIKFVVSDEGLYLTTSDSDITINTFLPLE 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           V+          GSI +      +I++KL          E   G  V I  G S + L  
Sbjct: 61  VNDTQVIQIDAVGSIIIPGKYFIEIIKKLNGDTIEISTFE---GNYVTIKCGRSEYTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F  +++P+ +  +      +   +LK ++ +T F+ A  E R  L G+ F  + ++  L 
Sbjct: 118 FDVTQYPNIELIKNDDPIHMEKQLLKTIIRQTVFSTANSENRPVLTGVNFRYDADE--LM 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VATD  RL+   V +  ++    +I++P +++ E+ +IL    +SV + L+ ++I   I
Sbjct: 176 CVATDSFRLSKKTVPL-NKLHDSFNIVIPGRSLIELSKILDDSHNSVDIYLANNQILFQI 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL- 290
            ++S   RL+DG +P  +  +P +   E++ N   L  A DR ++++  +    VKL++ 
Sbjct: 235 GNISFQSRLLDGIYPETKEFVPTTFGIEIKANYHELLNAFDRAALIARDQVSNVVKLNIL 294

Query: 291 -SSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
               KL +T  +P++GK  E + V   +   + I  +  ++++ +  I+     + +V+ 
Sbjct: 295 PEESKLLITAQSPEVGKVEEEVQVEMISGGELRIACSALFIIDALKAIN-----NSDVIM 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +       +R K                +++P+R+
Sbjct: 350 SFNGDMRPFVLRDK---------YDETTIQLIVPVRM 377


>gi|296503248|ref|YP_003664948.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
 gi|296324300|gb|ADH07228.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
          Length = 376

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 177/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|183219429|ref|YP_001837425.1| DNA polymerase IIIsubunit beta [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
 gi|189909575|ref|YP_001961130.1| DNA-directed DNA polymerase subunit beta [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167774251|gb|ABZ92552.1| DNA-directed DNA polymerase, beta subunit [Leptospira biflexa
           serovar Patoc strain 'Patoc 1 (Ames)']
 gi|167777851|gb|ABZ96149.1| DNA polymerase III, beta chain [Leptospira biflexa serovar Patoc
           strain 'Patoc 1 (Paris)']
          Length = 372

 Score =  265 bits (677), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 176/389 (45%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV  ++ L+ +     +I  +       ++ +Q  +  + + A+  EI I  ++P++
Sbjct: 1   MKFTVNTTEFLKAINSVDGVISVREIKSALSNLKIQTGENEVYLSATDLEIAIKTSVPST 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNIS----HGDSNFYLQSFPES 116
           +   G+ ++ A  L  I + L     +    EN   +E  I+      D+ F +      
Sbjct: 61  IGEKGTASLPAKQLSSIFKNLNFDTSLLTTTENSENSETTITDASGKMDTKFKVNGIDSE 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +  +  + +     E     ++ +  +T +AMA EE R+  NG+F   +  D  L  V T
Sbjct: 121 DIKTIPKVDEASVVEFPCQTIREMFRKTSYAMAIEETRFVFNGLFLKPDNTD--LIVVGT 178

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG RL+        Q      +I+P KAV E+L+++  K+ + K+   E +I+++  ++ 
Sbjct: 179 DGRRLSKIVRKFPKQFPFKNGVIIPHKAVREMLKMMEGKE-TAKIGFVEEQIYVSSGNVE 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +LIDG FP+Y+ VIP    + +RV   +    + +  I +    + ++L+ S   + 
Sbjct: 238 LLFKLIDGNFPDYEQVIPKQTTESVRVVKADFLTFLKQALISAEEPSKQIRLAFSKGNVN 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  NP       +M + YN   + I F   YL +++  +      D EV+    +S++ 
Sbjct: 298 ISSSNPGTMMFDHNMPIEYNGETITIAFKGDYLSDVVKAVD-----DPEVILEFTTSSAP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V  +           +  +   V+MPM++
Sbjct: 353 VLFKDP---------SDSDFVSVIMPMKL 372


>gi|30020817|ref|NP_832448.1| DNA polymerase III subunit beta [Bacillus cereus ATCC 14579]
 gi|229128034|ref|ZP_04257016.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4]
 gi|229145271|ref|ZP_04273660.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24]
 gi|29896369|gb|AAP09649.1| DNA polymerase III, beta chain [Bacillus cereus ATCC 14579]
 gi|228638110|gb|EEK94551.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST24]
 gi|228655309|gb|EEL11165.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-Cer4]
          Length = 376

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 175/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKFLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V +  SES I    
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATINELLKLMNSNSEFVYIYFSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|229103294|ref|ZP_04233977.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28]
 gi|228680133|gb|EEL34327.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-28]
          Length = 376

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 173/396 (43%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   + I   IP S
Sbjct: 1   MEFIVSHKHFTQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQIATILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQ----IITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P +EFP+          ++ +  L  + ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 LPANEFPNVPLIGDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLV 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + +      + IVP   + E+L++++S    V + LS+S +    
Sbjct: 175 CAATDSHRLAIRETLVSSDA--KANCIVPSATISELLKLMNSNTEFVYIYLSDSHVIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + +   RLI+G++PN  N+IP      + V    + Q VDR S+++S      V L + 
Sbjct: 233 GTTTFYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ V  
Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAI-----TEEMVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|229110137|ref|ZP_04239713.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
 gi|228673329|gb|EEL28597.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
          Length = 376

 Score =  264 bits (676), Expect = 1e-68,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++           A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQ---------FAAVHLISPVR 374


>gi|228921359|ref|ZP_04084683.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
 gi|228838304|gb|EEM83621.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           huazhongensis BGSC 4BD1]
          Length = 376

 Score =  264 bits (676), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 177/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQSLSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIKKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++     V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNGNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|227500985|ref|ZP_03931034.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
           35098]
 gi|227216758|gb|EEI82156.1| possible DNA-directed DNA polymerase [Anaerococcus tetradius ATCC
           35098]
          Length = 370

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 97/387 (25%), Positives = 186/387 (48%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + D++  +  A + + +   I +   +  +  D  L +KA   EI I   + A 
Sbjct: 1   MKFRISQQDLMSAINIAMKAVSKSTNIQIHELIYFECFDNSLFLKAFDGEIAIKTKVDAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + V A L+ +IVRKL +   I   K+     ++NI    SNF L +F   E   
Sbjct: 61  VDEKGEMAVKASLIANIVRKLPNDIVIVENKDG----KINIKCSSSNFNLLAFDYFEKNE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   + E+ + VLK  + +T FA + +E +  L GI F     D  L  VA DG+R
Sbjct: 117 L-SIPDTLAIEIDNDVLKRSISQTEFATSLDETKLALTGILFEFK--DGFLNMVALDGYR 173

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ +V +      +    I+P++++ E  RI+S  D+  K+  +E+ +    E+ +M  
Sbjct: 174 VSLKKVKLEYPTDYEDSEYIIPKRSLLEWSRIVSD-DTKTKLYKNENDLIFVSENTTMQC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           ++ID  F +Y+N+I   ++  + V+   L  ++DR  +++   R   +K+ +S DKL + 
Sbjct: 233 KVIDKNFIDYRNIINDISETSIIVDKRELINSLDRAQVLADPGRANLIKIEIS-DKLMLI 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E+++V      ++I FN +Y+ E +    S +     +     S+ +   
Sbjct: 292 KSNSEIGDVREAIDVDQQGPDLEIAFNARYMQEGVKACDSTK-----IKLNFKSALNPCL 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +     N+     +  Y+++P+R+
Sbjct: 347 IYPE-----NSSYENEDFTYLVLPVRL 368


>gi|269217834|ref|ZP_06161688.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
 gi|269212769|gb|EEZ79109.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 848
           str. F0332]
          Length = 377

 Score =  264 bits (675), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 165/390 (42%), Gaps = 23/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MK+ VE     + +    R I  + ++PV   + ++A+ DG + + +  P+I     I A
Sbjct: 1   MKLRVEHDVFADAVSWVARTIPSRPSLPVLAGMKIEADRDGSVALSSYDPDISSHAVIEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +VD  G+  V   LL D  R L +            G ++ +  G S+  +QS P  ++P
Sbjct: 61  AVDDPGTTLVHGRLLSDFARALPNKP----IDMELKGAKLEVVCGSSHISMQSMPLEDYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S      V S  +  ++ +  V +   A ++++    L  +   I  + + L  +ATD +
Sbjct: 117 SAPPMPEV-SGVVDGALWQETVAQVVTAASSDDTLPLLVSVCIEIEGKTMSL--MATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSES----RIHLNIES 234
           RLAV ++            I+ R + + +I + L S    V++++  S     I  +   
Sbjct: 174 RLAVRDLTWEPANEDASHRILVRASRLSDIAKALGSV-GKVELAIDNSGRTGMIGFSAAG 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
                RLIDGE+P  +N+ P        +    +  A+ R  ++   +  AV+LS S  +
Sbjct: 233 RHNVARLIDGEYPQVRNLFPSEATGYAVIGRQEMLDAIKRARLVV-EKNSAVRLSFSEGQ 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +     D  +  E++    +   + + FN  +L E +   S+       V     S++
Sbjct: 292 VILEAGQGDNAQTSEALEATLHGEDIVMAFNPSFLQEGLGATSA-----PYVRLSFTSAS 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               +  +    + + ++      +LMP+R
Sbjct: 347 KPAVLTAQ---PEIDGEDDQEFRLLLMPIR 373


>gi|288926238|ref|ZP_06420164.1| DNA polymerase III, beta subunit [Prevotella buccae D17]
 gi|315606364|ref|ZP_07881380.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae
           ATCC 33574]
 gi|288337017|gb|EFC75377.1| DNA polymerase III, beta subunit [Prevotella buccae D17]
 gi|315252055|gb|EFU32028.1| DNA-directed DNA polymerase III beta subunit [Prevotella buccae
           ATCC 33574]
          Length = 374

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 90/372 (24%), Positives = 163/372 (43%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  + +   L    R+I  KN +P+    L Q  +  L I A   E  +  A+   
Sbjct: 1   MRFTLSSTALSSRLNTLARVINSKNALPILDCFLFQVENNRLLITAGDGENVMQSALELD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S +  G   V    + D V++L +              ++   +G  NF  Q     E+P
Sbjct: 61  SCEGEGEFAVPNRTILDAVKELPEQPLNFDIDTQSFAIKIVYQNGLYNFTAQ--NAEEYP 118

Query: 120 ST-KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                E+   +  + ++VL + + R+ FA A +E+R  +NGI+F +  +   L  VA+DG
Sbjct: 119 RMQPVEDGATTMTMDAAVLVDNISRSLFATAQDELRPVMNGIYFDLTPDA--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     + I+P+K    +  +LS     V V  ++    +      + 
Sbjct: 177 HKL-VRNKNFNIKSETPAAFILPKKPASLLKNVLSKDGGEVIVKFNDRSAEMRFSDGVLY 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N   + ++   L  A+ RV   +S   Q V+  + S ++ ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPNRVTIDRRALLGALRRVLPFASESSQLVRFHVESGRMELS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E +   Y+  PM I F    + EI+ ++ S     DEVV  L   + + 
Sbjct: 296 GEDIDFATSAKEQVTCEYSGQPMSIGFKGGSMQEILSSLES-----DEVVIELADPSRAG 350

Query: 358 FIRGKDKDSKNN 369
            +    +    +
Sbjct: 351 TVMPSQQPENED 362


>gi|229116204|ref|ZP_04245594.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3]
 gi|228667036|gb|EEL22488.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-3]
          Length = 376

 Score =  264 bits (674), Expect = 2e-68,   Method: Composition-based stats.
 Identities = 91/396 (22%), Positives = 176/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V    I + L    + I  K  IP+   + + A+   + + AS   + I   IP S
Sbjct: 1   MEFIVNHKHITQALSEVSKAISTKVLIPILSGIKITADQSGITLIASNSNVFIKKFIPNS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEQIATILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQ----IITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P +EFP+    E     ++ +  L  + ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 LPANEFPNVPLIEDHAEIQVETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLV 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I +      + IVP   + E+L++++S    V + LS+S +    
Sbjct: 175 CAATDSHRLAIRETLISSDA--KANCIVPSATISELLKLMNSHTEFVYIYLSDSHVIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V    + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVINVERKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ V  
Sbjct: 293 NESTIKISSNASQIGKIAETQQVDAIQGEKQLNISFDGRFMVDALRAI-----TEEMVTL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|224458008|ref|ZP_03666481.1| DNA polymerase III, beta subunit [Francisella tularensis subsp.
           tularensis MA00-2987]
 gi|254875663|ref|ZP_05248373.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
 gi|254841662|gb|EET20098.1| DNA polymerase III [Francisella tularensis subsp. tularensis
           MA00-2987]
          Length = 329

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 97/324 (29%), Positives = 181/324 (55%), Gaps = 7/324 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + R D+L+ L     +   K+T+P+   +L   ++  L+I AS  + EI+  I  S
Sbjct: 1   MNFVLNRDDLLKPLQSMLSVANSKSTMPLLSCILFDIDNNNLKITASDLDTEISCNIAVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +    + ++A  +Y+IVR L + + I F        +V I   +S F L S     +P 
Sbjct: 61  CNTTIKLALNADKIYNIVRSLNENSMIDFRINE---NKVTIVSNNSTFNLISLNADNYPL 117

Query: 121 TK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    SF+L+     +++ +  F+MA ++ RY+LNG+F+ IN   L+  AV+TDGH
Sbjct: 118 IDSNINEQASFDLSQQDFHHIISKVDFSMANDDTRYFLNGMFWEINANLLR--AVSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+++ E  I +++    S  I+P+KA+ E+ +I+   + ++K+ L ++ +     + +  
Sbjct: 176 RMSITEAIIDSKVLDSASQSIIPKKAILELKKIVGKTEENIKICLGKNYLKAIFGNYAFI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LIDG +P+YQ VIP +N K L V+    + ++ R SI+++ + + V+L++S ++L ++
Sbjct: 236 SKLIDGRYPDYQKVIPKNNTKLLAVDKQFFKNSLLRTSILANDKYKGVRLNISQNQLLLS 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDI 322
            +NPD  KA + + V YN+ PM+I
Sbjct: 296 ANNPDNEKAEDKIEVQYNDQPMEI 319


>gi|330835985|ref|YP_004410626.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374]
 gi|329747888|gb|AEC01244.1| DNA polymerase III, beta subunit [Spirochaeta coccoides DSM 17374]
          Length = 371

 Score =  264 bits (674), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 91/384 (23%), Positives = 186/384 (48%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   +++ I + +  A     ++N++ +  +VLL+  + LL IKA+  ++     IP  
Sbjct: 1   MKFVCQKATIFKEISLALDFTSQRNSLSIVSNVLLETKENLLVIKATDQKVGFHSQIPVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS TV       I+R L +   +   K  +L  E        +F L++    +FP 
Sbjct: 61  TLEEGSTTVFCDKFLGILRSLPETDILFEEKNEKLYIEPV--AQKMDFQLRTIGSDKFPD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +E   V  F ++     ++V +T FA++ +E RYY++G++         L  VATDG R
Sbjct: 119 LEEHSNVPFFTISQKDFLDMVNQTIFAISEDETRYYMSGVYLEY--NTSSLIMVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L+  E  I   I + PS+I+P K +  ++R +++ + + ++ ++E+ I  +     +   
Sbjct: 177 LSYIERKIEETIPRFPSVIIPAKFLT-LIRKMATGEGTFRLGVTENTIFASFGGQFIYSA 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP S    +  +  ++ +AV RVS+    + + + L +  + + ++ +
Sbjct: 236 LINGKFPNYRRVIPESQSTSVITSVADILEAVKRVSLFVETKAKKIFLDIDQNGITVSSE 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+G A E++   Y+  P  I  NY Y++  +  +  ++            +  ++ + 
Sbjct: 296 ENDLGIARETITADYSGEPCRISLNYGYIMSPLRVMEGEKT-----RISFTDTGKALTLS 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +          + + F+++MPM+
Sbjct: 351 PE---------PERDYFHIIMPMQ 365


>gi|218233276|ref|YP_002367414.1| DNA polymerase III subunit beta [Bacillus cereus B4264]
 gi|218161233|gb|ACK61225.1| DNA polymerase III, beta subunit [Bacillus cereus B4264]
          Length = 376

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 179/396 (45%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEIILSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINIDRKKVLQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+ +++++ +  I      ++++  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EEKITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|315222843|ref|ZP_07864728.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211]
 gi|315188079|gb|EFU21809.1| DNA polymerase III, beta subunit [Streptococcus anginosus F0211]
          Length = 378

 Score =  263 bits (673), Expect = 3e-68,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 175/392 (44%), Gaps = 27/392 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
             ++ ++  L+ L    R I  KN IP+   V +   +  + +  S  +I I   I    
Sbjct: 3   NFSINKNLFLQALNTTKRAISLKNAIPILSTVKIDVTNEGITLIGSNGQISIENFISIKN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 V   GSI + A    ++V  L D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLVTSSGSILLEATFFINVVSSLPDVTLDFKEIEQK---QIVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L +SVLKN++  T FA +T+E R  L G+ F + E    L  V
Sbjct: 120 ADQYPRIQEISASNPLVLETSVLKNIINETAFAASTQESRPILTGVHFVLTENKN-LKTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +         +++P +++ E   + +    +V++  + +++    E+
Sbjct: 179 ATDSHRMSQKKIVLEKN-GDNFDVVIPSRSLREFSAVFTDDIETVEIYFTNNQLLFRSEN 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP      +  +  NLR A++R  ++S+  +   VKL + + 
Sbjct: 238 ISFYTRLLEGNYPDTDRLIPTEFTSIVTFDKNNLRYAMERARLLSNATQNGTVKLEIING 297

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +   V++P++G+  E ++    +   + I FN  YL++ +  I+S++     V     S
Sbjct: 298 VVSAHVNSPEVGRVNEEIDTESISGQNLTISFNPTYLIDSLKAINSEK-----VTISFIS 352

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +   +           N   ++ P+R
Sbjct: 353 AVRPFTLVPNED--------TENFIQLITPVR 376


>gi|300213941|gb|ADJ78357.1| DNA polymerase III, beta chain [Lactobacillus salivarius CECT 5713]
          Length = 352

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 75/361 (20%), Positives = 162/361 (44%), Gaps = 29/361 (8%)

Query: 35  LQANDGLLEIKASGPEIEITGAI-------PASVDVCGSITVSAHLLYDIVRKLQDGAQI 87
           +  +   L +  S  +I I   I          ++  G++ + A    +IV+KL +    
Sbjct: 1   MDLSKDALTLTGSNSDISIETIISIADDNAALQIEQEGAVVLPARFFSEIVKKLPEQ--- 57

Query: 88  SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147
           +   E     +  I+ G + F +      E+P   E +      +   +LK ++ +T  A
Sbjct: 58  TMTIEINERFQATITSGSAEFTINGLNAEEYPHLPEIDSKDQLTVPGDILKQVISQTVIA 117

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207
           ++ +E R  L GI   I   + +L AVATD HRL+   + +      +  +I+P K++ E
Sbjct: 118 VSNQESRPILTGIHLVIK--NGELLAVATDSHRLSQRIIKLSGADDAVYDVIIPGKSLSE 175

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267
           + +++S  D ++++ +SE++    + + S   RL++G++P+ + +IP  ++  +  N   
Sbjct: 176 LSKMISDSDENIEIQISENQALFILGNTSFYTRLLEGKYPDTERLIPKVSEITVDFNAVE 235

Query: 268 LRQAVDRVSIMSSV-RIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNV-YYNECPMDIC 323
           L Q+++R S++S   R   VKL+++     + ++ + P++G   E ++        ++I 
Sbjct: 236 LLQSIERASLLSHEGRNNVVKLAINPSVQSVVLSGNTPEVGNVEEELHFKNLEGSELEIS 295

Query: 324 FNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           FN  Y+ + + +         E+            I   +         K N   ++ P+
Sbjct: 296 FNPDYMKDALRSFGQS-----EITIAFTQPLRPFTIVPTED--------KDNFVQLITPV 342

Query: 384 R 384
           R
Sbjct: 343 R 343



 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 22/201 (10%), Positives = 62/201 (30%), Gaps = 16/201 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG---PEIEITGAIP 58
           ++TV    + +++      +  + + P+   + L   +G L   A+        I   + 
Sbjct: 99  QLTVPGDILKQVISQTVIAVSNQESRPILTGIHLVIKNGELLAVATDSHRLSQRII-KLS 157

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            + D    + +    L ++ + + D  +    + +E      + +      L      + 
Sbjct: 158 GADDAVYDVIIPGKSLSELSKMISDSDENIEIQISENQALFILGNTSFYTRLLEGKYPDT 217

Query: 119 PSTKEEEYVYSFELASSVLKNLVER------------THFAMATEEIRYYLNGIFFHINE 166
                +    + +  +  L   +ER               A+        L+G    +  
Sbjct: 218 ERLIPKVSEITVDFNAVELLQSIERASLLSHEGRNNVVKLAINPSVQSVVLSGNTPEVGN 277

Query: 167 EDLKLCAVATDGHRLAVAEVD 187
            + +L     +G  L ++   
Sbjct: 278 VEEELHFKNLEGSELEISFNP 298


>gi|282878678|ref|ZP_06287447.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310]
 gi|281299223|gb|EFA91623.1| DNA polymerase III, beta subunit [Prevotella buccalis ATCC 35310]
          Length = 374

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 174/386 (45%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  S +   L    ++I  KN++P+    L    D  L I AS  E  +  ++   
Sbjct: 1   MRFTLSSSALNSRLQTLSKVINSKNSLPILDSFLFDIQDKQLNITASDSENVMRTSLQLD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D      V +  + D V++L +           L  ++   +G  NF  Q    +E+P
Sbjct: 61  ECDGESKFAVPSRTILDAVKELPEQPLTFEVDVTNLTIQIQYQNGVYNFTAQ--NAAEYP 118

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            ++      +   + + +L + + R+ FA A +E+R  +NGI+F +  +   L  VA+DG
Sbjct: 119 ESQAIPDGATVITMNAGILNDNINRSLFATAQDELRPVMNGIYFDLTSDS--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     S I+P+K    +  +L+  +    +        ++    S+S
Sbjct: 177 HKL-VRNKNFKLKSETPASFILPKKPAMLLRNVLTKDEGDAVIKFDTKNAEIHYAGGSLS 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP  N  +L V+   L  A+ R+   +S   Q V+L L + KL ++
Sbjct: 236 CRLIEGRYPNYNSVIPQDNPNQLTVDRKGLLGALRRILPFASESSQLVRLHLETGKLELS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y+   M+I F    L EI+ N+ S     ++V  +L   + + 
Sbjct: 296 SEDIDFATSAKESIVCDYSGQTMNIGFKGSSLTEILTNLES-----EDVTIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          ++   +   ++MPM
Sbjct: 351 VIVP------TTQEEDEDILMLIMPM 370


>gi|288800440|ref|ZP_06405898.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299
           str. F0039]
 gi|288332653|gb|EFC71133.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 299
           str. F0039]
          Length = 374

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 91/371 (24%), Positives = 171/371 (46%), Gaps = 11/371 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +  + +   L    ++I  KNT+P+    L + ND +L I  S  E  +   +P  
Sbjct: 1   MKFKLSSTSLNNSLQTLAKVIASKNTLPILESFLFEVNDNVLTITGSDNENVMRTTLPLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G I + +    D+V++L +         N    EV   +G  NF  Q       P
Sbjct: 61  ESDGDGVIAIPSRTTLDVVKELPEQPLAFDIDTNNFNVEVTYQNGKYNFTAQDGTAYPKP 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E      + +++L   + R+ FA+ ++++R  +NG++F +    L +  VA+DGH
Sbjct: 121 E-GVSEGTSVITIPANILNANITRSMFAVGSDDMRPVMNGLYFDLQTTGLSI--VASDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +L    +  +   A   + I+P+K    +  +L   +S V +    +   +N  S +++ 
Sbjct: 178 KLVRNVISTITG-ATPAAFILPKKPATLLKNVLPKDNSDVVIKFGTNCAEINFASGTLTC 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G +PNY +VIP SN  ++ ++  +L  A+ RV   +S   Q ++  L + KL ++ 
Sbjct: 237 RLIEGRYPNYSSVIPESNPNQVTIDRLSLLGALRRVLPFASESTQLIRFKLEAGKLEISS 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++ D    A E++N  Y    M I F    + +I++++ S     DEV  +L   + +  
Sbjct: 297 EDIDFSTSAKEAVNCDYTGNNMSIGFKGGSMTDILNSLES-----DEVTIQLADPSRAGL 351

Query: 359 IRGKDKDSKNN 369
           I    +    +
Sbjct: 352 ILPSVQPENAD 362


>gi|13398088|gb|AAK21713.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 102/383 (26%), Positives = 197/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I      L  VATDG+
Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++L + 
Sbjct: 236 AQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQLKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|11320909|gb|AAG33950.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  263 bits (672), Expect = 4e-68,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 201/383 (52%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ +  ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFNIKNNIFVQHLQKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + GSITVS+  L  I R   + + I     +    ++++    S++ L + P   FP
Sbjct: 61  QHYISGSITVSSRKLLQICRNSSNLSNIQIELHD---NKIHVISDKSHYTLNTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +   Y+    + S +L+ ++E+ +F+M  +++RYYLNG+   I +    L  VATDG+
Sbjct: 118 NHQNFCYISEITIQSRILREIIEKIYFSMGKQDVRYYLNGMLCKIIDNS--LHMVATDGY 175

Query: 180 RLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +++  +   +I K  SII+ RK + E+  +L+     VKV +  S I + I  L  +
Sbjct: 176 RLGISKTLLLKEEIIKNFSIIIARKGITELYXLLNFSXQLVKVFIGRSNIRIYIXXLIFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FP+Y+++     +  + ++C  L+Q++ R +I++  +   +++ ++ ++  + 
Sbjct: 236 AQLIEGKFPDYESIFLKKKNNGILIDCQLLKQSLSRAAILAHEKFCGIEIHINKNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A +  ++ Y    ++I  N  Y+L+I++ I+S       ++  L+ SN+S+ 
Sbjct: 296 SDNQEEETAEDIFDINYIGPSIEISINVYYILDILNVINSQ-----NILLFLNHSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +         N  +  Y++M
Sbjct: 351 IEAE---------NDASTIYIVM 364


>gi|161621802|ref|YP_054725.2| DNA polymerase III subunit beta [Propionibacterium acnes KPA171202]
 gi|289424627|ref|ZP_06426410.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187]
 gi|289155324|gb|EFD04006.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK187]
          Length = 386

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 175/402 (43%), Gaps = 35/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 1   MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   VS  LL DI R L +       +      ++++  G + F LQ+ P  E+P 
Sbjct: 61  VDEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +R
Sbjct: 117 LPQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           +A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    + 
Sbjct: 174 MALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDG 232

Query: 235 ----LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                 M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ +
Sbjct: 233 ANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVI 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVD 343
           + D + ++    D  +A E++      + +  P  I    FN  YL + +  + +     
Sbjct: 292 NDDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT----- 345

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G +     +   + +  +V+M MR+
Sbjct: 346 PYVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 384


>gi|229045382|ref|ZP_04192044.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
 gi|228724982|gb|EEL76277.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
          Length = 376

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 89/396 (22%), Positives = 177/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISIKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G+   ++    K  
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTGVHIELSNN--KFI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRLSSDV--KANCIVPSATINELLKLMNSNSKFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGKISETQQIDAIQGEKQLNISFDGRFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|157827170|ref|YP_001496234.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389]
 gi|157802474|gb|ABV79197.1| DNA polymerase III subunit beta [Rickettsia bellii OSU 85-389]
          Length = 379

 Score =  262 bits (671), Expect = 5e-68,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N I    ++ L A DGLLE+ ++  ++ ++  I   V
Sbjct: 3   KVIVETKTLVQALGFASSVVEKRNVISELANIKLSAKDGLLELSSTNMDLYLSQKIGVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G +TVS   L DIV+KL D         +   T + I+  +  F L + P   FP  
Sbjct: 63  VSEGELTVSTKTLNDIVKKLPDSEL---TLTDLGTTGLEITGKNCRFNLFTLPVESFPVM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNGI+ H+   D +  A +TDGHRL
Sbjct: 120 DNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVK--DSEFYAASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +V+ V +  +I     +I+P+K+  EIL+I+      ++ +++ LS ++I     E++ M
Sbjct: 178 SVSSVVLAEKIED-FGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y + IP ++  +L +N       ++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEI 296

Query: 298 TVDNPDMGKAIESMN--------VYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N          Y+    +DI FN +YL +++  I SD      V  
Sbjct: 297 SAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S ++ V I+  +              +V+MP+++
Sbjct: 352 YFSSVSAPVLIKFPESPKD---------IFVVMPVKV 379


>gi|282853040|ref|ZP_06262377.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139]
 gi|282582493|gb|EFB87873.1| DNA polymerase III, beta subunit [Propionibacterium acnes J139]
          Length = 386

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 91/402 (22%), Positives = 174/402 (43%), Gaps = 35/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A 
Sbjct: 1   MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   VS  LL DI R L +       +      ++++  G + F LQ+ P  E+P 
Sbjct: 61  VDEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +R
Sbjct: 117 LPHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           +A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    + 
Sbjct: 174 MALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDG 232

Query: 235 ----LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                 M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ +
Sbjct: 233 ANGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVI 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVD 343
           + D + ++    D  +A E++      + +  P  I    FN  YL + +  + +     
Sbjct: 292 NDDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT----- 345

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G +     +   + +  +V+M MR+
Sbjct: 346 PYVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 384


>gi|6606560|gb|AAF19209.1|AF213934_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  262 bits (671), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/385 (27%), Positives = 214/385 (55%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++     + L    R+I + NT+P+  ++L+  N+ ++ + A+  E E+  +I  S
Sbjct: 1   MKFNIKNKIFTQHLKKINRLISKNNTLPILENILITVNNDIVSLTATNLETELISSIKTS 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                GSITVS   L +I +   + ++I      +   +++I   DSN+ L + P   FP
Sbjct: 61  NTHTPGSITVSGQKLLNIXQNSSELSEIKISLNED---KMHIVSDDSNYILTTLPSDNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F ++S VLK ++E+T F+M  +++RYYLNGI    N++   L AVATDG+
Sbjct: 118 NHNNFHHISEFFISSDVLKKMIEKTQFSMGKQDVRYYLNGILLEKNKKS--LYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   +  + S+I+PR+ + E+ ++L+ K   + V + ++ I ++IE L  +V
Sbjct: 176 RLGISKTALKENV-CIFSVIIPRRGIIELHKLLNIKPQLIHVLIGKNNIRIHIEKLIFTV 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+GE+P+Y++++       + +N   L+Q++ RVS++S      +++ ++++K  +  
Sbjct: 235 QLIEGEYPDYKSILLRKKKHPIVLNNKILKQSLLRVSVLSXKNFCGIEIHITNNKFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +N    KA +S  + Y    ++I  N  Y++E+++ I+S       +   ++ SN+S+ I
Sbjct: 295 NNQYEEKAEDSFKINYCGDDIEISINVYYIIEVLNVITSK-----NIFIFVNESNNSIHI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             ++ +S         + YV+M +R
Sbjct: 350 ESEEDNS---------SLYVIMLLR 365


>gi|148244171|ref|YP_001218865.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius
           okutanii HA]
 gi|146325998|dbj|BAF61141.1| DNA polymerase III beta subunit [Candidatus Vesicomyosocius
           okutanii HA]
          Length = 367

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 105/386 (27%), Positives = 196/386 (50%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +   ++LE L     +IE+K T+P+  HVL+Q  + LL +  +  EIEI  +    
Sbjct: 1   MNIQLRVKELLEPLQTVISVIEKKQTLPILAHVLIQLENNLLTLTTTDMEIEIKTSQIIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                S TV A  L +I++KL +   I F   N   +++ I    ++F L +F   +FPS
Sbjct: 61  NKEEISFTVYAKDLINIIKKLPENTIIKFIINN---SKIYIKVNKNSFELNTFRHQDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +   +  +   +LKNL+E+T F+M  ++IR YLNG++F IN+ +  +  V TDGHR
Sbjct: 118 LPKIKNKKNITIKRKILKNLIEKTSFSMGNQDIRAYLNGLYFEINKNN--IVVVTTDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           L++ ++          ++I+PRK++ E  ++L+  +   V +  S +  +L+  + ++  
Sbjct: 176 LSIGKIKQANNSLNKKTVILPRKSIIEFTKLLNKNEHEEVNIYTSNNYFYLSTNNTTIIS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FPNY  VIP   +  + +N  +   ++ + SI      + VKL   + +L +  
Sbjct: 236 KLINSKFPNYLPVIPTDFNNTIIINRLDFLNSLQQASIFVEEHTKGVKLIFKNSQLYIFS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N + G+A   +        ++I FN  YL+ I++ ++++E+         +  N S  +
Sbjct: 296 -NSERGQAKTQIKTKNFNKKIEIAFNINYLISILEKLNTNEINM----IIPNGKNKSCLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D            Y++MPMR+
Sbjct: 351 NSINDDI---------YQYIVMPMRL 367


>gi|11320913|gb|AAG33952.1|AF197892_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 102/382 (26%), Positives = 209/382 (54%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFNINNKIFIQYLKKVNRFITKNTSFPILENILISIKNGILSLTATNLEIELIANIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D + GS TVS+  + DI R   D + I      +   +++I+  +S++ L++ P   FP
Sbjct: 61  EDCISGSTTVSSQKILDICRYSSDLSDIKIELSQD---KMHITSDNSHYILKTLPIDNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     +V  F + S+ L++++E+THF+M  +++RYYLNG+   I +    L  VATDG+
Sbjct: 118 NHNSFHHVVEFFIHSNSLRDMIEKTHFSMGKKDVRYYLNGMLLEIIDNS--LHMVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A+  +     +  +I++ R+ + E+ ++L+    S+K+ + ++ I + I++L  + 
Sbjct: 176 RLALAKTLLNQIKKQSFAIVIARQGIIELYKLLNVSKQSIKILIGKNNIRIFIKNLIFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G FPNY +V     +  + +NC  L++++ R +I+S  +   V++ +++++  +  
Sbjct: 236 QLIEGTFPNYTSVFLKKKNNGIILNCKLLKRSLLRTAILSHEKFCGVEIHINNNEFKVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +   + YN   ++I  N  Y+L+I++ ISS     + ++  ++ SN+S+ I
Sbjct: 296 DNQEEETAEDKFQIDYNNPSIEISINVYYILDILNTISS-----ENILLFVNHSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  Y++M
Sbjct: 351 EAE---------NDASTIYIVM 363


>gi|254424267|ref|ZP_05037985.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335]
 gi|196191756|gb|EDX86720.1| DNA polymerase III, beta subunit [Synechococcus sp. PCC 7335]
          Length = 344

 Score =  262 bits (670), Expect = 6e-68,   Method: Composition-based stats.
 Identities = 81/357 (22%), Positives = 167/357 (46%), Gaps = 25/357 (7%)

Query: 36  QANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95
            A    + +      + I     A VD  G+ T+ A LL DIV +L +        E+  
Sbjct: 4   DAAAQTVTLVGFDETLGIQTTFAAQVDESGTTTLPAKLLGDIVSRLPNEDI--DISEDND 61

Query: 96  GTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              V +S     + ++     ++P+  E E   + ++++  L   +    FA +++E + 
Sbjct: 62  EPVVTLSCSAGRYQVRGLSAEDYPNLPEIESTDTVKISADALVEGLRGALFATSSDETKQ 121

Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRIL 212
            L G+     +E L+    ATDGHRLAV         +      ++ +P KA+ E+ RIL
Sbjct: 122 VLTGVHLTAMDESLEF--AATDGHRLAVVNTIDETGTSTPDLEMNVTIPGKALRELERIL 179

Query: 213 SS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
            +      V + L E+++  ++    ++ RL+DG++PNY  +IP   +++L ++      
Sbjct: 180 QAYPSSEPVALKLDETQVVFDLGRQRITTRLLDGQYPNYNQLIPKQFERQLTLDRKQFVS 239

Query: 271 AVDRVSIMSSVRIQAVKLSLSS--DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           +++R+ +++  R   VKL++S+    L ++V+  ++G  +E++        +DI FN +Y
Sbjct: 240 SLERIGVIADQRNNIVKLTISNTQQSLALSVEAQEVGSGLENLPAQVTGDDLDIAFNVRY 299

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           LLE +  + +      E+  + +++ S   ++                 Y++MP++I
Sbjct: 300 LLEGLKALPTS-----EIQVQCNTATSPSVLKP---------LGGTKITYLVMPVQI 342



 Score = 44.8 bits (105), Expect = 0.022,   Method: Composition-based stats.
 Identities = 38/230 (16%), Positives = 73/230 (31%), Gaps = 20/230 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           + +    ++E L  A        T  V   V L A D  LE  A+        A+  ++D
Sbjct: 96  VKISADALVEGLRGALFATSSDETKQVLTGVHLTAMDESLEFAATD---GHRLAVVNTID 152

Query: 63  VCGS--------ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY--LQS 112
             G+        +T+    L ++ R LQ              T+V    G       L  
Sbjct: 153 ETGTSTPDLEMNVTIPGKALRELERILQAYPSSEPVALKLDETQVVFDLGRQRITTRLLD 212

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
                +     +++     L      + +ER              N +   I+     L 
Sbjct: 213 GQYPNYNQLIPKQFERQLTLDRKQFVSSLERIGVIADQRN-----NIVKLTISNTQQSL- 266

Query: 173 AVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKV 221
           A++ +   +     ++ AQ+      I    + + E L+ L + +  V+ 
Sbjct: 267 ALSVEAQEVGSGLENLPAQVTGDDLDIAFNVRYLLEGLKALPTSEIQVQC 316


>gi|51473607|ref|YP_067364.1| DNA polymerase III subunit beta [Rickettsia typhi str. Wilmington]
 gi|81610796|sp|Q68WW0|DPO3B_RICTY RecName: Full=DNA polymerase III subunit beta
 gi|51459919|gb|AAU03882.1| DNA nucleotidyltransferase (DNA-directed) [Rickettsia typhi str.
           Wilmington]
          Length = 381

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 111/397 (27%), Positives = 206/397 (51%), Gaps = 31/397 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLVQSLGFARSVVEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G ITVS   L DIVRKL D        +     ++ I   +  F L + P S FP+ 
Sbjct: 63  LSEGEITVSTQTLSDIVRKLPDSELTLTELD---IMKLEIKGQNCQFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              +   SF+++ +    ++E T F+++ +E RY LNGI+ HI +++    A +TDGHRL
Sbjct: 120 DSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKE--FFAASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSESRIHLNI-ESLSM 237
           +++ + +  +I K   +I+P+K+  EIL+I+         +++ LS ++I     E+  +
Sbjct: 178 SISWITLEEKI-KNFGVILPQKSAEEILKIVKDLKNIHEDIEILLSSNKIKFICNENTIL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +A+KLSLS   L +
Sbjct: 237 LSKLIDGTFPDYSAFIPKSSISKLVINRKIFADSIERIAIITVEKFRAIKLSLSRKTLEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +    +         +  + I FN +YL +++  + S+ V   E+ F
Sbjct: 297 SAVGEARGNAKEIITASQDKESFYEYNCDESLVIGFNPQYLEDVLKAVKSNLV---ELYF 353

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S+++ V I+                 +V+MP+++
Sbjct: 354 SDISASAPVLIKFPQNPKD---------IFVIMPVKV 381


>gi|189467073|ref|ZP_03015858.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM
           17393]
 gi|189435337|gb|EDV04322.1| hypothetical protein BACINT_03456 [Bacteroides intestinalis DSM
           17393]
          Length = 355

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 95/352 (26%), Positives = 171/352 (48%), Gaps = 13/352 (3%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVR 79
           I  KN +P+    L +  DG L +  S  E  +  ++     D  G   V+A  + D ++
Sbjct: 2   INSKNALPILDCFLFELKDGTLSVTVSDSETTMVTSVEVNESDADGRFAVAAKTILDALK 61

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLK 138
           ++ +      F+ N    E+ + + +  + L      EFP +    +     E+ +SVL 
Sbjct: 62  EIPEQP--LSFEVNTDSLEITVQYQNGKYSLMGQNADEFPQSAMLGDNAVRVEMEASVLL 119

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
             + R  FA A +E+R  +NGI+F I  ED+ +  VA+DGH+L V    + A+  +  + 
Sbjct: 120 GGINRAVFATADDELRPVMNGIYFDITTEDITM--VASDGHKL-VRCKTLAAKGNERAAF 176

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           I+P+K    I  +L  +   V +   E      +E   M  RLI+G +PNY +VIP +N 
Sbjct: 177 ILPKKPASLIKNLLPKEQGQVVIEFDERNAVFTLEKYRMVCRLIEGRYPNYNSVIPQNNP 236

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNE 317
            ++ V+   L  A+ RVSI SS     +KL +  +++ ++  + D    A E++   Y+ 
Sbjct: 237 YKVTVDRIQLVGALRRVSIFSSQASSLIKLRMQPNQIVISAQDIDFSTSAEETLACQYDG 296

Query: 318 CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
            PM I F   +L++I++NI++     DEV+  L   + +  I   +++   +
Sbjct: 297 NPMSIGFKSTFLIDILNNIAA-----DEVIIELADPSRAGVIIPVEQEENED 343


>gi|51244500|ref|YP_064384.1| DNA polymerase III, beta chain [Desulfotalea psychrophila LSv54]
 gi|50875537|emb|CAG35377.1| probable DNA polymerase III, beta chain [Desulfotalea psychrophila
           LSv54]
          Length = 376

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 93/389 (23%), Positives = 183/389 (47%), Gaps = 25/389 (6%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           TV + D+LE LG    I  +  T+ +  +VL++ ++G L + A+  EI +   I A +  
Sbjct: 6   TVLKQDLLEGLGSIQNITNKNGTMAILFNVLIETSNGGLTLTATDLEIGLKIFIKAEIHG 65

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            GS+T+ +  +++IVR   +        E +  + V I  G S + L      E+P   E
Sbjct: 66  EGSLTLPSKKIFEIVR---ESGSEKISIEEKENSWVVIKAGQSTYNLAGMASDEYPEFPE 122

Query: 124 EEYVYSFELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLK--LCAVATDGHR 180
            +        S + + L+E+  F++A  +E  Y L  I F   +E  K  L  +++DGHR
Sbjct: 123 YDEDSFTVFESYLFQELIEKVIFSVANEQENIYTLTSILFEKEKEGDKNYLKMISSDGHR 182

Query: 181 LAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           L++   ++   +      P  ++P+K V E  +   +KD S++VS    ++ L      M
Sbjct: 183 LSIMRREVPVDLTNFKVNPVTLIPKKGVQEWKKFCDNKD-SIEVSFEHDKLILRNNQDVM 241

Query: 238 SVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            V L  GEFP Y+ ++     +  L +       ++ R+++ +      ++L++  D + 
Sbjct: 242 VVSLKTGEFPQYKAIVDAVQLENCLEIPRIPFLDSLKRINLFTEDVFHTIQLAIDKDFMV 301

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N D+G A +   + Y+  P+ + FN +Y ++ +  +  +++        ++SSNS 
Sbjct: 302 LSSQNADLGNAKDEQVIAYSGEPLTLGFNCRYFIDTLQAMECEKIKA-----YINSSNSP 356

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I         N D+      ++MPM++
Sbjct: 357 CLI---------NSDDDPGFTSIIMPMQL 376


>gi|153839072|ref|ZP_01991739.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810]
 gi|149747455|gb|EDM58409.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus AQ3810]
          Length = 268

 Score =  262 bits (670), Expect = 7e-68,   Method: Composition-based stats.
 Identities = 89/285 (31%), Positives = 169/285 (59%), Gaps = 17/285 (5%)

Query: 101 ISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI 160
           +  G S F L + P ++FP+ ++ +      L+ + L+ L+++T F+MA +++RYYLNG+
Sbjct: 1   VRSGRSRFSLATLPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGM 60

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
            F I  +   L +VATDGHR+AV++  + A  A+   IIVPRK V E+++++ + +  V 
Sbjct: 61  LFEI--DGTTLRSVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVV 117

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           + +  S +   + +   + +L+DG FP+Y+ V+P   +K L  +C  LRQA  R +I+S+
Sbjct: 118 LQIGSSNVRAEVNNFIFTSKLVDGRFPDYRRVLPQHTNKTLIASCDELRQAFSRAAILSN 177

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            + + V+++L+  ++ +T +NP+  +A E ++V +   P++I FN  Y+L++++ +    
Sbjct: 178 EKFRGVRVNLAGSEMRITANNPEQEEAEEMLDVTFEGDPIEIGFNVSYVLDVLNTLRC-- 235

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++V   +  +N+S  I   D DS         A YV+MP+R+
Sbjct: 236 ---EKVQVSMSDANASALIENADDDS---------AMYVVMPIRL 268


>gi|289427477|ref|ZP_06429190.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165]
 gi|289159407|gb|EFD07598.1| DNA polymerase III, beta subunit [Propionibacterium acnes J165]
 gi|313765025|gb|EFS36389.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA1]
 gi|313771065|gb|EFS37031.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL074PA1]
 gi|313792567|gb|EFS40653.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA1]
 gi|313803568|gb|EFS44750.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA2]
 gi|313806857|gb|EFS45355.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA2]
 gi|313811770|gb|EFS49484.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA1]
 gi|313814220|gb|EFS51934.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA1]
 gi|313815418|gb|EFS53132.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA1]
 gi|313817644|gb|EFS55358.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA2]
 gi|313821531|gb|EFS59245.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA1]
 gi|313824525|gb|EFS62239.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA2]
 gi|313826194|gb|EFS63908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA1]
 gi|313829190|gb|EFS66904.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL063PA2]
 gi|313832304|gb|EFS70018.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL007PA1]
 gi|313832764|gb|EFS70478.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL056PA1]
 gi|313839623|gb|EFS77337.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL086PA1]
 gi|314916214|gb|EFS80045.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA4]
 gi|314917481|gb|EFS81312.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA1]
 gi|314921817|gb|EFS85648.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA3]
 gi|314926332|gb|EFS90163.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL036PA3]
 gi|314930918|gb|EFS94749.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL067PA1]
 gi|314955286|gb|EFS99691.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA1]
 gi|314959159|gb|EFT03261.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA1]
 gi|314961664|gb|EFT05765.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA2]
 gi|314963872|gb|EFT07972.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA1]
 gi|314969082|gb|EFT13180.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA1]
 gi|314975199|gb|EFT19294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA1]
 gi|314977612|gb|EFT21707.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL045PA1]
 gi|314980256|gb|EFT24350.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA2]
 gi|314985202|gb|EFT29294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA1]
 gi|314987111|gb|EFT31203.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA2]
 gi|314990687|gb|EFT34778.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL005PA3]
 gi|315078994|gb|EFT51006.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL053PA2]
 gi|315081496|gb|EFT53472.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL078PA1]
 gi|315083081|gb|EFT55057.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL027PA2]
 gi|315086614|gb|EFT58590.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL002PA3]
 gi|315088016|gb|EFT59992.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL072PA1]
 gi|315097161|gb|EFT69137.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL038PA1]
 gi|315099341|gb|EFT71317.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL059PA2]
 gi|315102318|gb|EFT74294.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL046PA1]
 gi|315107497|gb|EFT79473.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA1]
 gi|315109865|gb|EFT81841.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL030PA2]
 gi|327332501|gb|EGE74236.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA2]
 gi|327333674|gb|EGE75391.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL096PA3]
 gi|327444468|gb|EGE91122.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL013PA2]
 gi|327446722|gb|EGE93376.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA2]
 gi|327448836|gb|EGE95490.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL043PA1]
 gi|327454253|gb|EGF00908.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA3]
 gi|327456313|gb|EGF02968.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL083PA2]
 gi|327457413|gb|EGF04068.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL092PA1]
 gi|328756011|gb|EGF69627.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL087PA1]
 gi|328757975|gb|EGF71591.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL020PA1]
 gi|328758854|gb|EGF72470.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL025PA2]
 gi|328759812|gb|EGF73403.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL099PA1]
          Length = 414

 Score =  262 bits (670), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 174/401 (43%), Gaps = 35/401 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A V
Sbjct: 30  EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 89

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   VS  LL DI R L +       +      ++++  G + F LQ+ P  E+P  
Sbjct: 90  DEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 145

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +R+
Sbjct: 146 PQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 202

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234
           A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +  
Sbjct: 203 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 261

Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ ++
Sbjct: 262 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 320

Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344
            D + ++    D  +A E++      + +  P  I    FN  YL + +  + +      
Sbjct: 321 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 374

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      + G +     +   + +  +V+M MR+
Sbjct: 375 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 412


>gi|171741733|ref|ZP_02917540.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC
           27678]
 gi|283454961|ref|YP_003359525.1| DNA polymerase III, subunit beta [Bifidobacterium dentium Bd1]
 gi|171277347|gb|EDT45008.1| hypothetical protein BIFDEN_00824 [Bifidobacterium dentium ATCC
           27678]
 gi|283101595|gb|ADB08701.1| DNA polymerase III, beta subunit [Bifidobacterium dentium Bd1]
          Length = 374

 Score =  262 bits (669), Expect = 8e-68,   Method: Composition-based stats.
 Identities = 80/387 (20%), Positives = 164/387 (42%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +    + + +    R+I+ +   P+   + L+A DG L++ A    I     I A 
Sbjct: 1   MKVEINSQALADAVAWTTRVIDARPATPILAGIRLEAIDGTLQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L              G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEAGTALVLGKLLADITKSLPSEKTYLSTD----GSTMTITSGKSTFTMQLMPDNEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                       + + +   V +   A++ EE R  L GI      +  K+   +TD  R
Sbjct: 117 LPVVPAKLGQVDSPTFM-QAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237
           L+ +      +   + +  + R A+   +     +  ++ +       S +         
Sbjct: 174 LSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFENAGRVS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +          ++  +L  A+ RVS+++  R   ++++ +  +L +
Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVA-ERNAPIRMAFAGQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YL+E +  IS     +  V  ++ ++   V
Sbjct: 293 SAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMTTAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|15604284|ref|NP_220800.1| DNA polymerase III subunit beta [Rickettsia prowazekii str. Madrid
           E]
 gi|6225282|sp|Q9ZDB3|DPO3B_RICPR RecName: Full=DNA polymerase III subunit beta
 gi|3860976|emb|CAA14876.1| DNA POLYMERASE III, BETA CHAIN (dnaN) [Rickettsia prowazekii]
 gi|292572033|gb|ADE29948.1| DNA polymerase III beta chain [Rickettsia prowazekii Rp22]
          Length = 381

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 115/397 (28%), Positives = 206/397 (51%), Gaps = 31/397 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  IIE++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKTLMQSLGFARSIIEKRNVIPEYANIKLSAQDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G ITV+   L DIVRK  D        E    T++ I   +  F L + P S FP+ 
Sbjct: 63  LNEGEITVATQTLSDIVRKFPDSELTLTEIE---ITQLEIKGQNCKFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              +   SF+++ +    ++E T F+++ +E RY LNGI+ HI +++    A +TDG+RL
Sbjct: 120 DSIKPEVSFKISCADFAKIIESTKFSISLDETRYNLNGIYLHIKDKE--FFAASTDGYRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD---SSVKVSLSESRIHLNI-ESLSM 237
           +++ + +  +I K   +I+P+K+  EIL+I+         +++ LS ++I     E+  +
Sbjct: 178 SISWITLEEKI-KNFGVILPQKSAEEILKIVKDPKNIHEDIEILLSSNKIKFICNENTIL 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      +++R++I++  + +AVKLSLS   L +
Sbjct: 237 LSKLIDGTFPDYSAFIPKSSVSKLVINRKIFADSIERIAIITVEKFRAVKLSLSRKILEI 296

Query: 298 TVDNPDMGKAIESMNVYYN---------ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +    +         +  + I FN +YL +++  I SD V   E+ F
Sbjct: 297 SAVGEARGTAKEIITASQDKESFYEYNHDESLVIGFNPQYLEDVLKAIKSDIV---ELYF 353

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S+++ V I+                 +V+MP+++
Sbjct: 354 SDISASAPVLIKFPRNPKD---------IFVIMPVKV 381


>gi|148271180|ref|YP_001220741.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
 gi|147829110|emb|CAN00007.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp.
           michiganensis NCPPB 382]
          Length = 383

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 171/390 (43%), Gaps = 20/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V R    E +  A +++ ++ T+P+   VL++A +  L + +   E+     I A 
Sbjct: 1   MKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + VS  LL DI  +L +       ++    +++ +S G ++F L S P  E+P+
Sbjct: 61  IEEPGRVLVSGRLLADIANRLPNAPVRFTTED----SKITVSCGSAHFTLLSMPVEEYPT 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        L +      V +   A + +++   + G+   + E  L L  +ATD +R
Sbjct: 117 LPQISEQSGL-LPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYR 173

Query: 181 LAVAEVDIVAQIA----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNI 232
           +AV E+D     +       + +VP + + EI +       ++ V+++++     I  + 
Sbjct: 174 VAVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHS-GTISVAITDTDDRQLIAFSA 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +  +++  LI G FP  + + P + D    +N  +L +A  RV ++   R  A++ + S 
Sbjct: 233 DRKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFSI 291

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D L +     +  +A ES++         +    ++LL+ +  + S+ V          +
Sbjct: 292 DGLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKTDNPN 351

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
               V I  +    +   D   N  Y+L P
Sbjct: 352 KPGPVLITSQSSKDQAGAD---NYRYLLQP 378


>gi|314922679|gb|EFS86510.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL001PA1]
 gi|314965764|gb|EFT09863.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL082PA2]
 gi|314982905|gb|EFT26997.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA3]
 gi|315091211|gb|EFT63187.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL110PA4]
 gi|315094445|gb|EFT66421.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL060PA1]
 gi|315105165|gb|EFT77141.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL050PA2]
 gi|327328940|gb|EGE70700.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL103PA1]
          Length = 414

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 90/401 (22%), Positives = 173/401 (43%), Gaps = 35/401 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A V
Sbjct: 30  EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 89

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   VS  LL DI R L +       +      ++++  G + F LQ+ P  E+P  
Sbjct: 90  DEPGESLVSGKLLADIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 145

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +R+
Sbjct: 146 PHMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 202

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234
           A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +  
Sbjct: 203 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 261

Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ ++
Sbjct: 262 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 320

Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344
            D + ++    D  +A E++      + +  P  I    FN  YL + +  + +      
Sbjct: 321 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 374

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      + G +     +   + +  +V+M MR+
Sbjct: 375 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 412


>gi|13398078|gb|AAK21708.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I      L  VATDG+
Sbjct: 118 NHNNFHHISEFYIHSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHALLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY  +     +  + +NC  L+Q++ R +I++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|219681400|ref|YP_002467785.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
 gi|257471073|ref|ZP_05635072.1| DNA polymerase III beta chain [Buchnera aphidicola str. LSR1
           (Acyrthosiphon pisum)]
 gi|219624243|gb|ACL30398.1| DNA polymerase III beta chain [Buchnera aphidicola str. 5A
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 207/382 (54%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +  + +++ L    R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S
Sbjct: 1   MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVATIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + + G+ T+S   L DI R   + + I     N    +++I  G+S + L + P   FP
Sbjct: 61  TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  ++  F + S +LK ++E+  F+M  +++RYYLNGI     + D  L AVATDG+
Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVRYYLNGILLE--KTDRSLYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   I    SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + 
Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++P+Y++V+  + +  + +N   L+Q++ R +I+S  +   V++ + + +  +  
Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  N+ Y    + I  N  Y++EI+++I+S     + +   L+++N+S+ I
Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  YV+M
Sbjct: 350 EAE---------NDASILYVVM 362


>gi|13398095|gb|AAK21716.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 100/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I      L  VATDG+
Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY  +     +  + +NC  L+Q++ R +I++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|11320893|gb|AAG33942.1|AF197882_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  261 bits (668), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 98/383 (25%), Positives = 198/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R I +  + P+  ++L+   + +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ITVS+  L DI R   + + ++         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNITVSSRKLLDICRHSLNSSNMNIEL---HANKIHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   +      L  VATDG+
Sbjct: 118 NHNNFHHIAEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEMIHNS--LYMVATDGY 175

Query: 180 RLAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ +  + I + IE L  +
Sbjct: 176 RLGMTHTRLTKTQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGTNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY ++     +  + +NC  L+Q++ R +I++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQCKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|13398101|gb|AAK21719.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I      L  VATDG+
Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHTILTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYDGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|11320897|gb|AAG33944.1|AF197884_1 DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|13398063|gb|AAK21701.1| DnaN [Buchnera aphidicola]
 gi|13398065|gb|AAK21702.1| DnaN [Buchnera aphidicola]
 gi|13398067|gb|AAK21703.1| DnaN [Buchnera aphidicola]
 gi|13398069|gb|AAK21704.1| DnaN [Buchnera aphidicola]
 gi|13398072|gb|AAK21705.1| DnaN [Buchnera aphidicola]
 gi|13398074|gb|AAK21706.1| DnaN [Buchnera aphidicola]
 gi|13398076|gb|AAK21707.1| DnaN [Buchnera aphidicola]
 gi|13398080|gb|AAK21709.1| DnaN [Buchnera aphidicola]
 gi|13398082|gb|AAK21710.1| DnaN [Buchnera aphidicola]
 gi|13398086|gb|AAK21712.1| DnaN [Buchnera aphidicola]
 gi|13398090|gb|AAK21714.1| DnaN [Buchnera aphidicola]
 gi|13398093|gb|AAK21715.1| DnaN [Buchnera aphidicola]
 gi|13398097|gb|AAK21717.1| DnaN [Buchnera aphidicola]
 gi|13398099|gb|AAK21718.1| DnaN [Buchnera aphidicola]
 gi|13398103|gb|AAK21720.1| DnaN [Buchnera aphidicola]
 gi|13398105|gb|AAK21721.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I      L  VATDG+
Sbjct: 118 NHNNFHHISEFYIDSNILKEMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|11320917|gb|AAG33954.1|AF197894_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  261 bits (667), Expect = 1e-67,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 210/382 (54%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++ + ++  L    R + + NT P+  ++L+   +G+L + A+  EIE+   I  S
Sbjct: 1   MKFNIKNNILIHNLQKINRFVTKNNTFPILENILISIKNGILSLTATNLEIELISNITLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + GS T+S+  L DI R   +   +S  +    G +++I    S + L +   + FP
Sbjct: 61  THYIPGSTTISSRKLLDICR---NSLNLSDIQIQLNGNKIHIISDKSKYILTTLSSNNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + K   ++  F + S++++ ++E+THF+M  +++RYYLNG+     ++ L +  +ATDG+
Sbjct: 118 NHKNFHHIAEFFINSNIIREMIEKTHFSMGKQDVRYYLNGMLLEKIDDSLNM--IATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +  +     SII+ RK + E+ ++L+  +  +K+ +++S I + IE    + 
Sbjct: 176 RLGISKTILQEKKISSFSIIITRKGITELYKLLNIPNQKIKILIAKSHIRIYIEQFIFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FPNY++V+    +  + +N   L+Q++ RVSI+S  +   V++ +  +   +  
Sbjct: 236 QLIEGQFPNYESVLFQQKNNGIILNSKLLKQSLMRVSILSHEKFCGVEIYIRDNTFKVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  ++ Y    ++I  N  Y+L+I+++I+S     + ++  L++SN+S+ I
Sbjct: 296 DNQEEEIAEDMFDINYIGPVIEISINVYYILDILNSINS-----ENILIFLNNSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
           + +         N     YV+M
Sbjct: 351 KAE---------NDTLTTYVVM 363


>gi|13398084|gb|AAK21711.1| DnaN [Buchnera aphidicola]
          Length = 368

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 196/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +      + L    R I +  + P+  ++L+   D +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFTQNLQKINRFITKNISFPILENILISIKDDILSLTTTNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + I+         +++I    S + L++ P   FP
Sbjct: 61  KHYVSGNTTVSSRKLLDICRNSLNSSNINIEL---HANKMHIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S++LK ++E+THF+M  +++RYYLNG+   I      L  VATDG+
Sbjct: 118 NHNNFHHISEFYIDSNILKKMIEKTHFSMGKQDVRYYLNGMLLEIINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY  +     +  + +NC  L+Q++ R SI++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYNGLFLKKKNNGIILNCALLKQSLLRASILTHEKFCGVEIYIKNNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++ISS     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAKDTFNINYIGPSIKISINVYYILDILNSISS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +            +  Y++M
Sbjct: 351 IEAEHD---------ASTIYIVM 364


>gi|306823995|ref|ZP_07457369.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|309801968|ref|ZP_07696082.1| DNA polymerase III, beta subunit [Bifidobacterium dentium
           JCVIHMP022]
 gi|304552993|gb|EFM40906.1| DNA-directed DNA polymerase III beta subunit [Bifidobacterium
           dentium ATCC 27679]
 gi|308221416|gb|EFO77714.1| DNA polymerase III, beta subunit [Bifidobacterium dentium
           JCVIHMP022]
          Length = 374

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 165/387 (42%), Gaps = 19/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +    + + +    R+I+ +   P+   V L+A DG+L++ A    I     I A 
Sbjct: 1   MKVEINSQALADAVAWTTRVIDARPATPILAGVRLEAIDGILQLSAFNYAISARHHIEAG 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  G+  V   LL DI + L              G+ + I+ G S F +Q  P++E+P 
Sbjct: 61  IDEAGTALVLGKLLADITKSLPSEKTYLSTD----GSTMTITSGKSTFTMQLMPDNEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                       + + +   V +   A++ EE R  L GI      +  K+   +TD  R
Sbjct: 117 LPVVPAKLGQVDSPTFM-QAVNQASVAVSREENRPVLTGIRVQFQGD--KVIMSSTDRFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS---ESRIHLNIESLSM 237
           L+ +      +   + +  + R A+   +     +  ++ +       S +         
Sbjct: 174 LSRSSFTWTPENPDINTTALVRGALLRDVARSLDEHQNIVLDFDPESPSLLGFENAGRIS 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LIDGEFP    +          ++  +L  A+ RVS+++  R   ++++ +  +L +
Sbjct: 234 TSQLIDGEFPAVDRLYADEYPIHAIIDKQSLIGAIKRVSLVA-ERNAPIRMAFAGQELTL 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +    D  +A E +++  +   + + FN  YL+E +  IS     +  V  ++ ++   V
Sbjct: 293 SAGTADEAQAKEIIDIDMDGDDITVAFNPSYLIEGLSAIS-----EPFVRMKMTTAVKPV 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              G+ +    + D  ++  Y+L+PMR
Sbjct: 348 EFNGQQE---ADSDESMDYRYLLVPMR 371


>gi|307297361|ref|ZP_07577167.1| DNA polymerase III, beta subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
 gi|306916621|gb|EFN47003.1| DNA polymerase III, beta subunit [Thermotogales bacterium
           mesG1.Ag.4.2]
          Length = 367

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 97/388 (25%), Positives = 176/388 (45%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAI-P 58
           MK    RS+IL  L      +  K+  P+   +     +D  ++++A+  E  IT  + P
Sbjct: 1   MKFVAARSEILTRLESVSGAVAPKSVKPILSGIYFSMKDDSTVKLQATDLETAITTELRP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             +D      + A L+ +IVR L +G  +   ++    T V I  G + F L +    EF
Sbjct: 61  KHIDGRCDFVIDARLVLEIVRNLPEGEVVFETED----TNVIIREGSARFTLPTMDPEEF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +       F ++ S ++ +++R  F  A +E    LN +++   +  L+L  VA DG
Sbjct: 117 PIVEPTSGGLEFTVSVSSIELMIDRVIFCAARDEFMRNLNSVYWEFEDGYLRL--VAADG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSM 237
            R+A++E  I   I      ++  K++ ++   L +  S + KV+   SR+    +   +
Sbjct: 175 FRMALSEERIDLSIDD--HFLLTLKSMKDLQNSLKAAMSDLLKVTYDGSRVQFLFDGTEI 232

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++D EFP+Y+ V+P S    L ++      AV R SI + +   +VK  +  ++  +
Sbjct: 233 VTKVVDAEFPDYKKVLPKSFKARLVLSTEVFSDAVRRASIAARLGSDSVKFEIDDEQFKI 292

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              +PD G++IE ++       + I FN ++L E    I S     D V      SNS +
Sbjct: 293 VARSPDHGESIEILDANKEGDNIVIAFNPRFLSESAKKIDS-----DTVELNFVDSNSPL 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D              YV+MP+R+
Sbjct: 348 QMNPVD---------VQGYTYVIMPIRL 366


>gi|308273671|emb|CBX30273.1| hypothetical protein N47_D30820 [uncultured Desulfobacterium sp.]
          Length = 364

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/379 (25%), Positives = 190/379 (50%), Gaps = 22/379 (5%)

Query: 12  ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71
           ++L     I  RK  + ++  VL++A D  + I ++  E   TG   A V+  G+I ++A
Sbjct: 3   DVLSKLQTIAGRKTNLAITTAVLIRATDSGINISSTDMETGFTGFYSAEVEREGAIAINA 62

Query: 72  HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131
            +L++I++   +        +N     +N    +  + +      +FP   + E +  F+
Sbjct: 63  KMLFEIIKDFPNEEIYINEIDNLWIEILN--QNNVEYKMAGMNPDDFPGIPDVENITYFD 120

Query: 132 LASSVLKNLVERTHFAMA-TEEIRYYLNGIFFH--INEEDLKLCAVATDGHRLAVAEVDI 188
           + +SV K+++E+T F    TEE R ++NG++    + +   KL  V+TDG RLA  + + 
Sbjct: 121 IKASVFKDMIEKTIFITGITEEKRPHINGVYLEKILEDGINKLRLVSTDGSRLAKVDCEY 180

Query: 189 VA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
               ++++ P II+ +K + ++ + L   + ++K+  + S   L  E+ ++ +RL++G F
Sbjct: 181 ENALELSEEPGIIISKKGLSDLNKFL-DTNKNIKIGYNNSNFVLKKENETVIIRLLEGNF 239

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P Y+ +I       + +    L   + R+SI +S   + V  +   +KL ++  NPD+G+
Sbjct: 240 PEYKYIIDKKEAFSITIERQKLLMMLKRMSIFTSDNFKGVIFNFDKEKLLVSSTNPDLGE 299

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           + E M + Y+  P++I FN +Y ++ ++ I      DD V+  L +  S   +  +    
Sbjct: 300 SKEEMIINYDFDPLEIAFNVRYFIDTLNVIK-----DDNVIIMLINEKSPCLVEAE---- 350

Query: 367 KNNKDNKVNAFYVLMPMRI 385
                N  N   V+MPMRI
Sbjct: 351 -----NNKNFLSVIMPMRI 364


>gi|91205471|ref|YP_537826.1| DNA polymerase III subunit beta [Rickettsia bellii RML369-C]
 gi|122990918|sp|Q1RIS7|DPO3B_RICBR RecName: Full=DNA polymerase III subunit beta
 gi|91069015|gb|ABE04737.1| DNA polymerase III beta chain [Rickettsia bellii RML369-C]
          Length = 379

 Score =  260 bits (666), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 114/397 (28%), Positives = 205/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  ++E++N I    ++ L A DGLLE+ ++  ++ ++  I   V
Sbjct: 3   KVIVETKTLVQALGFASSVVEKRNIISELANIKLLAKDGLLELSSTNMDLYLSQKIGVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G +TVS   L DIV+KL D         +   T + I+  +  F L + P   FP  
Sbjct: 63  VSEGELTVSTKTLNDIVKKLPDSEL---TLTDLGTTGLEITGKNCRFNLFTLPVESFPVM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNGI+ H+   D +  A +TDGHRL
Sbjct: 120 DNINPEASFKISCAEFAKIIESTKFSVSLDETRYNLNGIYLHVK--DSEFYAASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +V+ V +  +I     +I+P+K+  EIL+I+      ++ +++ LS ++I     E++ M
Sbjct: 178 SVSSVVLAEKIED-FGVILPQKSAEEILKIVKDSKNANADIEILLSSNKIKFICNENVIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y + IP ++  +L +N       ++R++I++  + +AVKLSLS + L +
Sbjct: 237 LSKLIDGTFPDYSSFIPENSSSKLVINRKIFADTIERIAIITVEKFRAVKLSLSGEALEI 296

Query: 298 TVDNPDMGKAIESMN--------VYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N          Y+    +DI FN +YL +++  I SD      V  
Sbjct: 297 SAIGEARGNAKEVINSSKETENFYEYSGETNLDIGFNPQYLEDVLKAIKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S ++ V I+  +              +V+MP+++
Sbjct: 352 YFSSVSAPVLIKFPESPKD---------IFVVMPVKV 379


>gi|15638997|ref|NP_218443.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189025238|ref|YP_001933010.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp.
           pallidum SS14]
 gi|4033379|sp|O83048|DPO3B_TREPA RecName: Full=DNA polymerase III subunit beta
 gi|3322257|gb|AAC65000.1| DNA polymerase III, subunit beta (dnaN) [Treponema pallidum subsp.
           pallidum str. Nichols]
 gi|189017813|gb|ACD70431.1| DNA-directed DNA polymerase beta subunit [Treponema pallidum subsp.
           pallidum SS14]
 gi|291059422|gb|ADD72157.1| DNA polymerase III, beta subunit [Treponema pallidum subsp.
           pallidum str. Chicago]
          Length = 371

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 174/388 (44%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  E+   L+ +  A  +I  K    +  +VLL A   LL I+A+  ++    +IP +
Sbjct: 1   MKILCEKEAFLKEISTAQEVISNKKNTSIFSNVLLAAQGALLTIRATDTKVTFETSIPVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ TV    L ++V  L          E +L       +   +F L++     FP 
Sbjct: 61  VLAEGTTTVFCDKLVNVVSALPTKEIELTLCEEQLVITPP--NKKISFQLRTLSHESFPC 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E   S  + +S L+N++  T FA++ +  R+++NG+  H++ +   +  V+TDG R
Sbjct: 119 FPQNEGGVSLAVPTSDLRNMINHTVFAVSEDSTRHFINGV--HVDFQYGNIICVSTDGKR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  E    +       +IVP K +G + R L+  + SV + ++   ++        S  
Sbjct: 177 LAYIEKKGESSPQSFSGVIVPTKILGIVNRKLT-PEGSVTLCITSQHVYFFFGGYKFSSV 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FPNY+ VIP   ++   V    L +A+ RVS++   +   + +++    L ++  
Sbjct: 236 LIEGQFPNYKRVIPDHQERSFCVGRVELMEALKRVSLLVEQKSHRIFITIQQGLLTLSSK 295

Query: 301 N----PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
                 ++G A E +   Y      I  NY YL E +   +S      EV         +
Sbjct: 296 AHTQENEIGDAQEEIACAYTGESEVIALNYLYLEEPLKVFTSK-----EVQVEFTDPAKA 350

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + +R              + F+++MPM+
Sbjct: 351 LTLRAV---------PNTDCFHIIMPMQ 369


>gi|311087504|gb|ADP67583.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF98
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  260 bits (665), Expect = 2e-67,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 207/382 (54%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +  + +++ L    R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S
Sbjct: 1   MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + + G+ T+S   L DI R   + + I     N    +++I  G+S + L + P   FP
Sbjct: 61  TEHISGTTTISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  ++  F + S +LK ++E+  F+M  +++RYYLNGI     + D  L AVATDG+
Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVRYYLNGILLE--KTDRSLYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   I    SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + 
Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++P+Y++V+  + +  + +N   L+Q++ R +I+S  +   V++ + + +  +  
Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  N+ Y    + I  N  Y++EI+++I+S     + +   L+++N+S+ I
Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  YV+M
Sbjct: 350 EAE---------NDASILYVVM 362


>gi|291513941|emb|CBK63151.1| DNA polymerase III, beta subunit [Alistipes shahii WAL 8301]
          Length = 374

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 185/388 (47%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK +V  S +L LL    ++I  KNT+P+  + LL+ N   L++  S  E  + G I   
Sbjct: 1   MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLLELNGNTLQVTTSDLETTLVGQIEVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           SV+  G+I   A L+ D +++  +       + N+   E+ I+    +  +       +P
Sbjct: 61  SVESEGTIAAPAKLMLDSLKEFPELP--LTIEVNDKNWEIKINWKSGSLSIPGASAVSYP 118

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  +         L    L N + +T FA A +E+R  +NGI+ ++  + L    V TD 
Sbjct: 119 AVPQLNAEKKELRLDVDTLVNGINKTIFATADDELRPVMNGIYINLAPDALTF--VGTDA 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   E +   ++    S I+P+K    +  +L  +D +++++         ++S ++ 
Sbjct: 177 HKLVKYEAETENEV--TASFILPKKPANLLKSVLLKEDDAIEMAFDSKNALFKLKSHTLV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  VIP +N  ++ V+   L   + RV++ S+     +++ ++ +++ +T
Sbjct: 235 CRLIEGNYPNYNAVIPSNNPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRITLT 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+++  Y+  P+ I F   +L+EI+ N+ +  VV +     L  S  + 
Sbjct: 295 AQDIDFSVSANETISCSYDGQPISIGFKSTFLVEILSNMDTPTVVVE-----LADSTRAG 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +    D + +         +LMPM I
Sbjct: 350 VFKPVYDDKQPSA-----TLMLLMPMMI 372


>gi|15616641|ref|NP_239853.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
 gi|11132241|sp|P57127|DPO3B_BUCAI RecName: Full=DNA polymerase III subunit beta
 gi|25288588|pir||C84931 DNA-directed DNA polymerase (EC 2.7.7.7) beta chain [imported] -
           Buchnera sp. (strain APS)
 gi|10038704|dbj|BAB12739.1| DNA polymerase III beta chain [Buchnera aphidicola str. APS
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 104/382 (27%), Positives = 208/382 (54%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +  + +++ L    R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S
Sbjct: 1   MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + + G+ T+S   L DI R   + + I     N    +++I  G+S + L + P   FP
Sbjct: 61  TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  ++  F + S +LK ++E+  F+MA +++RYYLNGI     + D  L AVATDG+
Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMAKQDVRYYLNGILLE--KTDRSLYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   I    SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + 
Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++P+Y++V+  + +  + +N   L+Q++ R +I+S  +   V++ + + +  +  
Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  N+ Y    + I  N  Y++EI+++I+S     + +   L+++N+S+ I
Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  YV+M
Sbjct: 350 EAE---------NDASILYVVM 362


>gi|228958921|ref|ZP_04120624.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
 gi|228800760|gb|EEM47674.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pakistani str. T13001]
          Length = 376

 Score =  260 bits (665), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 88/396 (22%), Positives = 175/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP  
Sbjct: 1   MEFIVNHKQFTQALSEVNKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVL 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQL----ITIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L  +   ++    KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTEVHIELSNN--KLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  + + +    + IVP   + E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLLSSDV--KANCIVPSATINELLKLMNSNSEFVYIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + V+   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +G+  E+  ++    E  ++I F+  ++++ +  I      ++ +  
Sbjct: 293 NESTIKISSNASQIGQISETQQIDAIQGEKQLNISFDGHFMVDALRAIK-----EETITL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQSA---------AVHLISPVR 374


>gi|297570615|ref|YP_003696389.1| DNA polymerase III subunit beta [Arcanobacterium haemolyticum DSM
           20595]
 gi|296930962|gb|ADH91770.1| DNA polymerase III, beta subunit [Arcanobacterium haemolyticum DSM
           20595]
          Length = 372

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 170/386 (44%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPA 59
           MKI VE     E +    R I  +  IPV   + +QA+ +G++ + +   +I     I A
Sbjct: 1   MKIIVEHDVFTEAVTWVARTIPNRPAIPVLAGLKIQASQNGIVSLGSRDSDISSHVDIEA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G + V+  LL DI R L     I    +   GT+++I  G S+F +++    ++ 
Sbjct: 61  DVLNAGDVLVNGRLLADICRALP-RKPIELTLD---GTKLDIECGSSHFSMKTMASEDYT 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +   V    +  S     + +   A + ++    L  +   IN + + L  +ATD +
Sbjct: 117 DGTDMPPVIG-TVDGSAWLEAISQVTIAASNDDTLPLLVSVCLEINGDSIAL--MATDRY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKA-VGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLAV +++       +   I+ R + + +I + L S    +++SLS+S I         +
Sbjct: 174 RLAVRDLEWTPTDTTISKRILVRASRLLDIAKALGSA-GPIEISLSDSLIGFAAGGKQNT 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           V+LIDGE+P   ++ P  +   + +N  ++  A+ R  ++   +  AV+LS +  ++ + 
Sbjct: 233 VQLIDGEYPQVLSLFPAESAGYMVMNRADMLDAIKRSRLVV-EKNAAVRLSFTEGEVTIE 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
               D  +A E++        + + FN  +L E    ++      ++V   +        
Sbjct: 292 AGQGDQAQASEALPADVVGEDVKMAFNPIFLQEGFSAMNC-----EKVRLSVTHPTKPAV 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  +      + ++  +   +LMP+R
Sbjct: 347 MTAE-----KDGESVEDFRLLLMPVR 367


>gi|11320901|gb|AAG33946.1|AF197886_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 367

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 202/382 (52%), Gaps = 20/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +     ++ L    R+I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRLITKNISFPILENILISIKNGILSLTATNLEIELIANIKLI 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + G+ TVS+  L DI R   + + ++         +++I    S + L++ P   FP
Sbjct: 61  KHYISGNTTVSSRKLLDICRHSLNTSNMNIELN---ANKIHIISNTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     ++  F + S+VLK ++E+THF+M  +++RYYLNG+   +      L  VATDG+
Sbjct: 118 NHNHFHHISEFYIDSNVLKEMIEKTHFSMGKQDVRYYLNGMLLKMINNS--LYMVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL++    +  Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  + 
Sbjct: 176 RLSITHTILKKQQIESFSIIMTRKGIIELYKLLNISKQLIKILIGKNSIRIYIEQLVFTA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G FPNY ++     +  + +NCT L+Q++ R +I++  +   V++ + +++  +  
Sbjct: 236 QLIEGIFPNYDSLFLNKTNNGIILNCTLLKQSLLRTAILTHEKFCGVEIHIKNNQFTVLS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A ++ N+ Y    + I  N  Y+L+++++ISS       ++  L++SN+S+ I
Sbjct: 296 DNQEEETAKDTFNINYIGPSIKISINVYYILDVLNSISSQ-----NIILFLNNSNNSIQI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  Y++M
Sbjct: 351 EAE---------NDTSTIYIVM 363


>gi|219681956|ref|YP_002468340.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|219621689|gb|ACL29845.1| DNA polymerase III beta chain [Buchnera aphidicola str. Tuc7
           (Acyrthosiphon pisum)]
 gi|311085761|gb|ADP65843.1| DNA polymerase III beta chain [Buchnera aphidicola str. LL01
           (Acyrthosiphon pisum)]
 gi|311086338|gb|ADP66419.1| DNA polymerase III beta chain [Buchnera aphidicola str. TLW03
           (Acyrthosiphon pisum)]
 gi|311086913|gb|ADP66993.1| DNA polymerase III beta chain [Buchnera aphidicola str. JF99
           (Acyrthosiphon pisum)]
          Length = 366

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 103/382 (26%), Positives = 207/382 (54%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +  + +++ L    R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S
Sbjct: 1   MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + + G+ T+S   L DI R   + + I     N    +++I  G+S + L + P   FP
Sbjct: 61  TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  ++  F + S +LK ++E+  F+M  +++RYYLNGI     + D  L AVATDG+
Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVRYYLNGILLE--KTDRSLYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   I    SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + 
Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++P+Y++V+  + +  + +N   L+Q++ R +I+S  +   V++ + + +  +  
Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  N+ Y    + I  N  Y++EI+++I+S     + +   L+++N+S+ I
Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  YV+M
Sbjct: 350 EAE---------NDASILYVVM 362


>gi|229161568|ref|ZP_04289548.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
 gi|228621813|gb|EEK78659.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
          Length = 376

 Score =  260 bits (664), Expect = 3e-67,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 177/396 (44%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP+S
Sbjct: 1   MEFIVNHKHFTQALSEVSKAISTKALIPILSGIKIIADQSGITLIASNSNIFIEKFIPSS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           +D          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IDDEQITTILKTGTIVVPAKYFIEIIKKMPGDIIIKSKNEQT----ITIQSEEITLNLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F   E+P+    +     ++ +  L  + ++T FA+A  E R  L G+   +  +  KL 
Sbjct: 117 FSADEYPNVPSIDNHVEIQMETEQLIEVFKQTVFAVAKNESRPVLTGVHIEL--DHNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I   +    + IVP   V E+L++++S    V + LSES I    
Sbjct: 175 CAATDSHRLAIRETLISTNM--KANCIVPSATVNELLKLINSNLEIVFIYLSESHIIFTF 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLS 291
            + ++  RLI+G++PN  N+IP      + ++   + Q VDR S+++S      V L + 
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNEFQTVIHMDRKKILQGVDRSSLLASEWANNNVNLEII 292

Query: 292 SDK-LCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++  + ++ +   +GK  E+  ++    E  ++I F+ +++++ +  I      ++ V+ 
Sbjct: 293 NESTIKVSSNASQIGKISETQQIDTIRGEKQLNISFDGRFMVDALRAIK-----EETVIL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   + I   ++ +         A +++ P+R
Sbjct: 348 SFGGSMRPILIEAGEQST---------AVHLISPVR 374


>gi|325478849|gb|EGC81959.1| DNA polymerase III, beta subunit [Anaerococcus prevotii
           ACS-065-V-Col13]
          Length = 370

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 186/387 (48%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + ++++ +  A + + +   I +   +  +  +  L + A   EI I  ++ A 
Sbjct: 1   MKFRINQQELIDAINIASKAVSKSTNIQIHELIYFECKENSLYLMAFDGEISIKTSVDAI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + V A L+ +IVRKL +       KE     +++I    SNF L +F   E   
Sbjct: 61  VDEEGEMAVKASLISNIVRKLPNDLVTISNKEG----KISIRCSSSNFNLIAFDYFEKND 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E       E+A+ VLK  + +T FA   +E +  L GI F + E  L +  VA DG+R
Sbjct: 117 I-EIPETTPIEIANDVLKRSISQTEFATTLDETKLALTGILFELKEGSLNM--VALDGYR 173

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ +V +      +    I+P++++ E  RI++ +D+  K+  +++ +    E+ +M  
Sbjct: 174 VALKKVKLDYPTDYEDSEYIIPKRSLIEWSRIIT-EDTKTKLYKNDNDLIFVSENTTMQC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           ++ID  F +Y+N+I   ++  + ++   L  ++DR  +++   R   +K+ ++   + + 
Sbjct: 233 KVIDKNFIDYRNIINDISETTIILDKRELINSLDRAQVLADPGRANLIKIEVADSSMVIK 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E ++V      +DI FN +Y+ E +    S +     +     SS +   
Sbjct: 293 S-NSEIGDVKEVIDVEQKGENLDIAFNARYMQEGVKACDSTK-----IKLNFKSSLNPCL 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +     N+     +  Y+++P+R+
Sbjct: 347 IYPE-----NSSYENEDFTYLVLPVRL 368


>gi|295129531|ref|YP_003580194.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137]
 gi|291376118|gb|ADD99972.1| DNA polymerase III, beta subunit [Propionibacterium acnes SK137]
          Length = 414

 Score =  259 bits (663), Expect = 4e-67,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 173/401 (43%), Gaps = 35/401 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I +ER  + E +  A R +  + T+P+   +L++A    + + AS  E      + A V
Sbjct: 30  EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAEGDSVVMSASDNETSAQITLSAQV 89

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   VS  LL DI   L +       +      ++++  G + F LQ+ P  E+P  
Sbjct: 90  DEPGESLVSGKLLADIACSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 145

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + +SV    V +   A   +E+     G+   IN E L L  +ATD +R+
Sbjct: 146 PQMP-AATGTVDASVFSRAVAQVVVAAGRDELLPVFTGVRVEINGETLSL--LATDRYRM 202

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234
           A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +  
Sbjct: 203 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 261

Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ ++
Sbjct: 262 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 320

Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344
            D + ++    D  +A E++      + +  P  I    FN  YL + +  + +      
Sbjct: 321 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 374

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      + G +     +   + +  +V+M MR+
Sbjct: 375 YVHFSFTAPGKPCLVTGLND---FDGKPETDYRHVIMLMRL 412


>gi|327334559|gb|EGE76270.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL097PA1]
          Length = 410

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 176/401 (43%), Gaps = 35/401 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I +ER  + E +  A R +  + T+P+   +L++A D  + + AS  E      +PA V
Sbjct: 26  EIRLERDVMAEAVAWAARSLPNRPTVPILAGLLVRAQDDSVVMSASDNETSAQITLPAQV 85

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   VS  LL +I R L +       +      ++++  G + F LQ+ P  E+P  
Sbjct: 86  DKPGESLVSGKLLAEIARSLPNKP----VQITTDPAKMDLVCGSARFTLQALPVDEYPDL 141

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + ++V    V +   A   +E+     G+   IN E L L  +ATD +R+
Sbjct: 142 PQMP-AATGTVDANVFSRAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRYRM 198

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES- 234
           A+ EV           + +VP K + E  R ++S +  V V+LS     E  +    +  
Sbjct: 199 ALKEVTWNPSATDAEATALVPAKVINETARSMTSGE-HVTVNLSSGDSGEGLVGFEGDGA 257

Query: 235 ---LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
                M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ ++
Sbjct: 258 NGVRRMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVHRVSLVA-ERNTPLRMVIN 316

Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344
            D + ++    D  +A E++      + +     I    FN +YL + +  + +      
Sbjct: 317 DDSIALSAATGDQAQASEAIEAVVTNHVDGES-TITAAGFNPQYLSDALGALDT-----P 370

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      + G +     +   + +  +V+M MR+
Sbjct: 371 YVHFSFTAPGKPCLVTGLND---LDGKPETDYRHVIMLMRL 408


>gi|116490128|ref|YP_809649.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1]
 gi|290889522|ref|ZP_06552612.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429]
 gi|116090853|gb|ABJ56007.1| DNA polymerase III, beta subunit [Oenococcus oeni PSU-1]
 gi|290480720|gb|EFD89354.1| hypothetical protein AWRIB429_0002 [Oenococcus oeni AWRIB429]
          Length = 374

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 179/393 (45%), Gaps = 30/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V+R+++   L    R I  K  IP+   + +  ++  + +  S  EI I   + A 
Sbjct: 1   MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I  +A+   +I++ L         +    G+++ I  G S+F +   
Sbjct: 61  KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEISTE----GSQIAIVGGSSDFTVAGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +   +  + SS L +++  T  A++ ++ R  L GI F I +  +K  A
Sbjct: 117 SADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V+TD HRL+     I         ++VP KA+ E+  +L + D ++ +    S++ +++ 
Sbjct: 175 VSTDSHRLSQRITKIGNDS--QADVVVPSKALIELRALLENID-NLNLQFDRSQLLVDLG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV-KLSLSS 292
             +   RL++G++P    +IP  +     ++   L  ++DR S+++      V + S+S 
Sbjct: 232 ETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQ 291

Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           DKL ++    ++GK +E +++  +    + I FN  ++ + + +I      + ++ F   
Sbjct: 292 DKLVLSTAQSEVGKVLEELSIDNFKGEDLKISFNPDFVRDALSSIG-----ESKLDFSFT 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++     IR        N  +  N   ++ P+R
Sbjct: 347 TNLRPFVIRP-------NGASDNNKVQLITPVR 372


>gi|328905787|gb|EGG25563.1| DNA polymerase III subunit beta [Propionibacterium sp. P08]
          Length = 386

 Score =  259 bits (662), Expect = 6e-67,   Method: Composition-based stats.
 Identities = 90/402 (22%), Positives = 175/402 (43%), Gaps = 35/402 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I +ER  + E +  A R +  + T+P+   + ++A D  + + AS  E      + A 
Sbjct: 1   MEIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G   VS  LL DI R L +              ++++  G + F LQ+ P  E+P 
Sbjct: 61  VDEPGEALVSGKLLADIARSLPNKPVRITTDP----AKMDLVCGSARFTLQALPVDEYPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +  + +S+    V +   A   +E+     G+   IN E L L  +ATD +R
Sbjct: 117 LPQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIES 234
           +A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    + 
Sbjct: 174 MALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDG 232

Query: 235 LS----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ +
Sbjct: 233 ANGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVI 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVD 343
           + D + ++    D  +A E++      + +  P  I    FN  YL + +  + +     
Sbjct: 292 NDDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT----- 345

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V F   +      + G +     +   + +  +V+M MR+
Sbjct: 346 PYVHFSFTAPGKPCLVTGLND---LDGKPETDYRHVIMLMRL 384


>gi|229085761|ref|ZP_04217989.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44]
 gi|228697560|gb|EEL50317.1| DNA polymerase III, beta subunit [Bacillus cereus Rock3-44]
          Length = 376

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 87/396 (21%), Positives = 171/396 (43%), Gaps = 34/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  +      + +    + +  KN  P+   + L A    L +  S  +I I   IP  
Sbjct: 1   MEFIINNECFNKAISEVSKAVSLKNPFPILTGIKLIAEKNCLILVGSNSDIVIEKIIPLM 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI +SA  L +IV+KL     I           V I   +    L  
Sbjct: 61  INDVKVLEVYKTGSIVISAKYLSEIVKKLPHDIHIKV----NGKQLVTIQSDEIVINLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           F   E+PS  + +     ++ S  L   + +T FA++  E R  L G+     E   +L 
Sbjct: 117 FNTEEYPSLPQIDEATYTKIPSIELIEAINQTVFAVSKSESRPVLTGVNMSFKEN--QLS 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            VAT+ HRLA+ E+ I   +    +  VP  ++ E+++++ ++   + + +++S I    
Sbjct: 175 CVATNSHRLALRELAIETNVNGSFN--VPGASLNELIKLIKNEIGEIHIYMTDSYIVFKS 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLS 291
           +++S+  RLI+G +PN   ++P  +   + ++   L + +DR  + ++  R   V L + 
Sbjct: 233 DTISLFSRLIEGNYPNISGLLPKDSKTIITLDTIQLLKGIDRACLFANEWRNNKVNLEIK 292

Query: 292 SD-KLCMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
              K+ +  ++ ++G+  E+ N+     E  + I  +  +L++ +  I      ++E+  
Sbjct: 293 DGTKIRIFSNSSELGEIEETQNIKMISGEKELSISLDGSFLIDALKVIK-----EEEIRL 347

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             D S   V I   D  S           +++ P+R
Sbjct: 348 SFDGSMRPVLIEPVDNSS---------YRHLISPVR 374


>gi|217077436|ref|YP_002335154.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B]
 gi|217037291|gb|ACJ75813.1| DNA polymerase III, beta subunit [Thermosipho africanus TCF52B]
          Length = 367

 Score =  259 bits (661), Expect = 7e-67,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 186/386 (48%), Gaps = 25/386 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           K+ ++RS++ + +  A + +  K   P+   +L +  D  L I ++  +  +   +    
Sbjct: 3   KLAIQRSELEKKISVAAQAVGSKTVDPILQCLLFKVEDNSLNIYSTDMQTFVVSKLNVPE 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FP 119
           V+  G   V A LL +IV+ + +   I     N    ++NI  G S+F + ++ E E FP
Sbjct: 63  VEGSGQFAVDAKLLEEIVKNVDNDQIIL----NYDNGKLNIKSGKSSFNIATYSEPEKFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S + E     FE+ +S+L+ +++R  F  +TE     LNG+++ + +  L+L  VA+DG+
Sbjct: 119 SIELENTGIKFEIETSILQEMIDRVIFCASTESAMRALNGVYWELKDNYLRL--VASDGY 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMS 238
           RLA+ E  I          I+  K++ E+  ++   D  V  ++    ++ +N   +++ 
Sbjct: 177 RLALVEQKITVNSD--IDFILSLKSMKELENLIKETDEPVLTINFDHKKLAVNAGDVTVI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           +R+++  FP+Y+ V+P +    +  N     +++ R  I++      V+L    D L ++
Sbjct: 235 MRVVEEVFPDYKRVLPKAFKSRIVFNKDQFLESLKRTMIIAKRGTDKVQLKALDDTLELS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +P+ G+ IE + +      + I FN ++L E +  I      ++EVVF      S + 
Sbjct: 295 SQSPEYGEVIEEIPIEKEGEDITINFNPRFLNEAVKKIE-----EEEVVFNFVDELSPMQ 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I  K         N     Y+++P+R
Sbjct: 350 INSK---------NVGEYLYIVLPVR 366


>gi|317509428|ref|ZP_07967046.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
 gi|316252257|gb|EFV11709.1| DNA polymerase III [Segniliparus rugosus ATCC BAA-974]
          Length = 397

 Score =  259 bits (661), Expect = 8e-67,   Method: Composition-based stats.
 Identities = 91/401 (22%), Positives = 169/401 (42%), Gaps = 31/401 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASV 61
             V R    + +    R +  +  +P+   +LL A++ G L +  +  ++     + A V
Sbjct: 8   FEVPRDLFADSVSWVTRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQV 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + VS  LL DI + L   +     K    G++V++  G + F L + P  EFPS 
Sbjct: 68  SGPGRVLVSGRLLADIAKALPSPS----VKIVAEGSKVHVRSGSAKFTLPTMPVDEFPSL 123

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E         A  +    + +   A + ++    L G+      ++L+L   ATD  RL
Sbjct: 124 AEHPAPIGVAAAKELFA-AISQVGVAASRDDTLPALTGLRLVFTGQELEL--AATDRFRL 180

Query: 182 AVAEVDIVAQI--AKMPSIIVPRKAVGEILRI-LSSKDSSVKVSLS-----ESRIHLNIE 233
           +V ++    +    +  + +VP   + E  R  L S D+ V+ +L       S + +   
Sbjct: 181 SVRKLAWEGKDFADEPVTALVPAAVLSEFARTPLPSDDTPVEFALDLGSGSPSLLGVQAG 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
              ++ RL+D + P+   +IP       RV+   L +AV RVS++S+ R Q ++L     
Sbjct: 241 PFRITTRLLDAQLPDVSQLIPKRYTAVARVDLAPLVEAVRRVSLVSARRSQ-IRLDFESS 299

Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                L ++    + G A E + V +    + + FN  YLL+ +    +     ++  F 
Sbjct: 300 GEDSVLRLSAGGEEAGFAEEELPVRHWGESISVVFNPGYLLDGLSTFRA-----EQAQFG 354

Query: 350 LDSSNSSVFIRGKDKD-----SKNNKDNKVNAFYVLMPMRI 385
               N +V +   D       ++       +  YVLMP+R+
Sbjct: 355 FTGQNRAVALVSGDGAEPEAIAEGYTAGSSDQVYVLMPVRL 395


>gi|229826863|ref|ZP_04452932.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC
           49176]
 gi|229788481|gb|EEP24595.1| hypothetical protein GCWU000182_02247 [Abiotrophia defectiva ATCC
           49176]
          Length = 370

 Score =  258 bits (660), Expect = 9e-67,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 182/385 (47%), Gaps = 24/385 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + +SD+++ +    + I  K T+P+   ++++  +  + + A+  E+ I   +   
Sbjct: 1   MLIKINQSDLIKSINIVIKAISTKTTLPILECIVIKTMENSIRLIANDMELGIETILSGE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSI +++ L  +IVRKL +        +N    +  I  G S F +      EFP 
Sbjct: 61  IIKEGSIALNSRLFSEIVRKLPNNLVEINTDDN---YKATIKCGKSVFTISGQSIEEFPV 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + E + S  L+   LK ++ +T F+++  E    + G    IN  +L++  +A DGHR
Sbjct: 118 LPQIEKIKSITLSQFSLKEMIRQTIFSISNNENMKVMTGELIEINNNNLRI--IALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +  +   + ++ VP K + EI +ILSS+    V +  S   I     + +++ 
Sbjct: 176 ISIRKIALKGEHENIKAV-VPGKTLSEISKILSSEIADEVTIYFSNKHIVFEFSNTTVNS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS-IMSSVRIQAVKLSLSSDKLCMT 298
           RLIDGEF N   +I    + ++ +N   L + +D     ++    + V L+++ + + ++
Sbjct: 235 RLIDGEFYNVDQMISSDYETKININRRELLENMDSALPFITEKEKKPVILNITENNMNLS 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           +    +G     M +      + I FN   +++ +       V D+ +   L +S +  F
Sbjct: 295 IKTT-VGNMNTDMELVKEGKDILIGFNPVLIMDALKV-----VEDENIDIYLFNSKAPCF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I+ K++          +  Y+++P+
Sbjct: 349 IKNKEE----------SYLYIILPV 363


>gi|298345814|ref|YP_003718501.1| DNA polymerase III subunit beta [Mobiluncus curtisii ATCC 43063]
 gi|315654388|ref|ZP_07907296.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           ATCC 51333]
 gi|298235875|gb|ADI67007.1| DNA polymerase III beta subunit [Mobiluncus curtisii ATCC 43063]
 gi|315491423|gb|EFU81040.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           ATCC 51333]
          Length = 380

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 156/391 (39%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ + R  + E +  + R I  +  + V   V ++A +  +E  +   E+     + A 
Sbjct: 1   MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G   V   LL +  R L   A +  F   +    ++I+ G     L      E+P
Sbjct: 61  EVTEPGVAVVDGKLLSETARALPSRADLVKFATED--NYLHITCGSFKQKLIMMHSEEYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +       ++ ++   + + +   A + +E    L GI   +  +  KL  +ATD +
Sbjct: 119 PLPQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLATDRY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234
           R+A+ E+           ++V  K + +  + +++    V+V++  +      I L    
Sbjct: 176 RMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATA-GDVEVAVGSANNPASLIGLAANG 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
              + ++ DG +P+ + + P   +    V      +   RV+I+SS    Q + L  +S 
Sbjct: 235 RVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSG 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L     N     A +++    N   + + FN + LLE +  I      +          
Sbjct: 295 QLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAID-----EPYARLSFKDE 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V I G+ ++     ++ +   Y++MP+R
Sbjct: 350 AKPVVITGQKEE---TGEDNLTFRYLIMPIR 377


>gi|313835168|gb|EFS72882.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA2]
 gi|314929144|gb|EFS92975.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL044PA1]
 gi|314970907|gb|EFT15005.1| DNA polymerase III, beta subunit [Propionibacterium acnes HL037PA3]
          Length = 410

 Score =  258 bits (660), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 89/401 (22%), Positives = 174/401 (43%), Gaps = 35/401 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I +ER  + E +  A R +  + T+P+   + ++A D  + + AS  E      + A V
Sbjct: 26  EIRLERDVMAEAVAWAARSLPNRPTVPILAGLFVRAKDDSVVMSASDNETSAQITLSAQV 85

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D  G   VS  LL DI R L +              ++++  G + F LQ+ P  E+P  
Sbjct: 86  DEPGEALVSGKLLADIARSLPNKPVRITTDP----AKMDLVCGSARFTLQALPVDEYPDL 141

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  + +S+    V +   A   +E+     G+   IN E L L  +ATD +R+
Sbjct: 142 PQMPEA-TGTVDASLFSKAVAQVVVAAGRDELLPVFTGVRVEINGEVLSL--LATDRYRM 198

Query: 182 AVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESL 235
           A+ E+           + +VP K + E  R ++S +  V ++LS     E  +    +  
Sbjct: 199 ALKEITWNPSATDAEATALVPAKVINETARSMTSGE-HVTMNLSSGDSGEGLVGFEGDGA 257

Query: 236 S----MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           +    M+ RL+ GEFP  ++++     + +R     L  +V RVS+++  R   +++ ++
Sbjct: 258 NGVRCMTTRLLSGEFPKVRHLMDIKATRSVRARTDELINSVRRVSLVA-ERNTPLRMVIN 316

Query: 292 SDKLCMTVDNPDMGKAIESMNV----YYNECPMDI---CFNYKYLLEIIDNISSDEVVDD 344
            D + ++    D  +A E++      + +  P  I    FN  YL + +  + +      
Sbjct: 317 DDSVALSAATGDQAQASEAIEAVVTNHVDGEP-TITAAGFNPHYLSDALGALDT-----P 370

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V F   +      + G +     +   + +  +V+M MR+
Sbjct: 371 YVHFSFTAPGKPCLVTGLND---LDGKPETDYRHVIMLMRL 408


>gi|118587494|ref|ZP_01544919.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163]
 gi|118432144|gb|EAV38885.1| DNA polymerase III, beta subunit [Oenococcus oeni ATCC BAA-1163]
          Length = 374

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 178/393 (45%), Gaps = 30/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V+R+++   L    R I  K  IP+   + +  ++  + +  S  EI I   + A 
Sbjct: 1   MKFSVKRNELTNKLNIVSRAISGKVIIPILTGIKISVSNNEMTLIGSNSEISIKTVLTAD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  G I  +A+   +I++ L         +    G+++ I  G S+F +   
Sbjct: 61  KDKKNLVIEEPGEIIANANFFSNIIKHLSSDKVEISTE----GSQIAIVGGSSDFTVAGQ 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +   +  + SS L +++  T  A++ ++ R  L GI F I +  +K  A
Sbjct: 117 SADNYPQLPRLDDANTINIPSSELIDIIGETIRAVSIQDSRPLLTGIHFTIGDNQIK--A 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           V+TD HRL+     I         ++VP KA+ E+  +L + D ++ +    S++ +++ 
Sbjct: 175 VSTDSHRLSQRITKIGNDS--QADVVVPSKALIELRALLENID-NLNLQFDRSQLLVDLG 231

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV-KLSLSS 292
             +   RL++G++P    +IP  +     ++   L  ++DR S+++      V + S+S 
Sbjct: 232 ETTFYSRLLEGQYPATDRLIPSDSTTSFTIDAAQLAPSLDRASLVAHQSGNIVAEFSISQ 291

Query: 293 DKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           DKL ++    ++GK +E + +  +    + I FN  ++ + + +I      + ++ F   
Sbjct: 292 DKLVLSTAQSEVGKVLEELLIDNFKGEDLKISFNPDFVRDALSSIG-----ESKLDFSFT 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++     IR        N  +  N   ++ P+R
Sbjct: 347 TNLRPFVIRP-------NGASDNNKVQLITPVR 372


>gi|170780464|ref|YP_001708796.1| DNA polymerase III subunit beta [Clavibacter michiganensis subsp.
           sepedonicus]
 gi|169155032|emb|CAQ00128.1| DNA polymerase III, beta chain [Clavibacter michiganensis subsp.
           sepedonicus]
          Length = 396

 Score =  258 bits (659), Expect = 1e-66,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 170/389 (43%), Gaps = 20/389 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  V R    E +  A +++ ++ T+P+   VL++A +  L + +   E+     I A +
Sbjct: 15  KFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSFDYEVSARTQIQADI 74

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G + VS  LL DI  +L +       ++    +++ +S G ++F L S P  E+P+ 
Sbjct: 75  EEPGRVLVSGRLLADIANRLPNAPVRFTTED----SKITVSCGSAHFTLLSMPVEEYPTL 130

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +        L +      V +   A + +++   + G+   + E  L L  +ATD +R+
Sbjct: 131 PQISEQSGL-LPAEQFAAAVSQVAVAASRDDVTPVITGVQLEVGETSLGL--IATDRYRV 187

Query: 182 AVAEVDIVAQIA----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNIE 233
           AV E+D     +       + +VP + + EI +       ++ V+++++     I  + +
Sbjct: 188 AVREIDWDGGDSTTDGTSRTALVPARTLQEIGKTFGHS-GTISVAITDTDDRQLIAFSAD 246

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             +++  LI G FP  + + P + D    +N  +L +A  RV ++   R  A++ + + D
Sbjct: 247 KKTVTSLLIRGNFPPVKRLFPETVDNYAVINTADLIEATRRVQLVL-EREAALRFTFTID 305

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +     +  +A ES++         +    ++LL+ +  + S+ V          + 
Sbjct: 306 GLTLEAIGSEHAQASESIDALLTGVDTVVSLKPQFLLDGLGAVHSEFVRLSFTKTDNPNK 365

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
              V I  +    +   D   N  Y+L P
Sbjct: 366 PGPVLITSQSSKDQAGAD---NYRYLLQP 391



 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 22/128 (17%), Positives = 50/128 (39%), Gaps = 7/128 (5%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
           +   F++   V    V      +        L+G+     E+ L L +   D    A  +
Sbjct: 12  HNVKFQVNRDVFSEAVSFAVKLLPQRTTLPILSGVLIEATEDGLTLSSF--DYEVSARTQ 69

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDG 244
             I A I +   ++V  + + +I   L +  + V+ +  +S+I ++  S   + + +   
Sbjct: 70  --IQADIEEPGRVLVSGRLLADIANRLPN--APVRFTTEDSKITVSCGSAHFTLLSMPVE 125

Query: 245 EFPNYQNV 252
           E+P    +
Sbjct: 126 EYPTLPQI 133


>gi|218290895|ref|ZP_03494959.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218239162|gb|EED06364.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 370

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 173/368 (47%), Gaps = 12/368 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +   L    RI + +    V   VL++A  G + + A   ++ +   + AS
Sbjct: 1   MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLMEAERGQVTLSAYDYDVALRMTVEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + + A L  ++VR+L  G  +            +I  G ++  L  F   EFP 
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGT-VDIATIAPHHLSASIDVGTTHAELHGFDPEEFPD 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179
             +   +   E+++  L   +E   +A + ++  R  L G++  +  ED KL  +ATDG 
Sbjct: 120 LPDMTGIVPVEISAKTLVEAIESVGYAASKQDASRPILEGVY--VGYEDGKLIWMATDGL 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
           RLA     +  +++      +PR+A+ E+ R+L    D++++V  S S +      + + 
Sbjct: 178 RLAKVSQTVDREMS--IRCTIPRRALTELTRLLDADDDATLQVYQSASYVMFTWNGVQLF 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL  GE+P+   V+P     E  V+   L++AV+RV++M+      V L +    L +T
Sbjct: 236 GRLYQGEYPDTSRVMPREFAAECTVDRRRLKEAVERVTVMAEHEHHTVSLYVKGGALELT 295

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + + G+A E +  V +    + +  N +Y+LE+++ + S +VV  +V        +SV
Sbjct: 296 SRSTERGRAREEVPLVEFAGDEIKVSLNARYVLEMLEAVESSKVVRMQVA----QGRNSV 351

Query: 358 FIRGKDKD 365
               +D +
Sbjct: 352 LFTDEDGN 359


>gi|157803823|ref|YP_001492372.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel]
 gi|157785086|gb|ABV73587.1| DNA polymerase III subunit beta [Rickettsia canadensis str. McKiel]
          Length = 379

 Score =  257 bits (658), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 113/397 (28%), Positives = 203/397 (51%), Gaps = 33/397 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ VE   +++ LG A  +IE++N IP   ++ L A DG LE+ ++  ++ ++  I   V
Sbjct: 3   KLIVETKMLVQSLGFASSVIEKRNVIPEYANIKLSAKDGNLELSSTNMDLYLSQKIAVQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G +TVS   L D+VRKL D         +   T + I   +  F L + P S FP+ 
Sbjct: 63  VSEGELTVSTKTLNDVVRKLSDSEL---TLTDLGTTGLEIKGKNCTFNLFTLPVSSFPAM 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  SF+++ +    ++E T F+++ +E RY LNG++ HI +++    + +TDGHRL
Sbjct: 120 DSINPEASFKISCTDFAKIIESTKFSISLDETRYNLNGVYLHIKDKE--FYSASTDGHRL 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNI-ESLSM 237
           +++ V +  QI K   +I+P+K+  EIL+I+      +  ++V LS ++I     E+  M
Sbjct: 178 SISWVTLEKQI-KNFGVILPQKSAEEILKIVKDPKNINQDIEVLLSSNKIKFICNENTIM 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG FP+Y   IP S+  +L +N      ++DR++I++  + +AVKL LS + L +
Sbjct: 237 LSKLIDGTFPDYSAFIPESSSSKLVINRKIFADSIDRIAIITVEKFRAVKLLLSRETLEI 296

Query: 298 TVDNPDMGKAIESMNVYY---------NECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +      G A E +N            ++  + I FN +YL +++  + SD      V  
Sbjct: 297 SAVGEARGNAQEVINSSQAKESFYEYNSDESLAIGFNPQYLDDVLKAVKSDL-----VEL 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                ++ V I+  +              +V+MP+++
Sbjct: 352 YFSGVSAPVLIKFPENPED---------IFVVMPVKV 379


>gi|24212702|ref|NP_710183.1| DNA polymerase III subunit beta [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45655916|ref|YP_000002.1| DNA polymerase III subunit beta [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
 gi|24193333|gb|AAN47201.1|AE011192_2 DNA polymerase III beta subunit [Leptospira interrogans serovar Lai
           str. 56601]
 gi|45599149|gb|AAS68639.1| DNA polymerase III beta subunit [Leptospira interrogans serovar
           Copenhageni str. Fiocruz L1-130]
          Length = 373

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 85/390 (21%), Positives = 180/390 (46%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V  S+ L+ +     +I  +    +  ++ ++A      + A+  EI I  ++PA 
Sbjct: 1   MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNIS----HGDSNFYLQSFPE 115
           V   G++++ A  L    + +  +   +S  + +   + V I+      D    +     
Sbjct: 61  VTQEGNVSLPAKQLSSFFKTIHFEDTNLSLEESDSNSSIVYITDASGKNDYKSKISGMDA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E  +  + +        S+++ +++ +T +A+A E+ R+  NG++   N +  KL  V 
Sbjct: 121 DEIKTISKIDSSQVSSFPSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNGD--KLIFVG 178

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDG RL   E  + + +    SIIVP KA+ EI +++++ +    + L + +I+++  ++
Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEV-GNIGLIDGQIYVSANNI 237

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +LI+G FPNY+ VIP +      ++    + ++ +V   +    + V+L+ S + L
Sbjct: 238 ELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQVRLTFSKNNL 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +        +A  +  + Y+   + I F  +YL++I  +I      D+EV      +NS
Sbjct: 298 NLFAQTLGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DNEVKIEFSDANS 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V  +           +      V+MPM++
Sbjct: 353 PVIFKDP---------SDPEFISVIMPMKL 373


>gi|304382374|ref|ZP_07364876.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii
           DSM 16973]
 gi|304336491|gb|EFM02725.1| DNA-directed DNA polymerase III beta subunit [Prevotella marshii
           DSM 16973]
          Length = 361

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 100/371 (26%), Positives = 166/371 (44%), Gaps = 17/371 (4%)

Query: 15  GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHL 73
               R+I  KN++P+    L + ++G L I AS  E  +   I     D  G+  V   +
Sbjct: 2   STLSRVINSKNSLPILDCFLFEVSNGQLSITASDSENVMKTTIQLDECDGNGNFAVPNRI 61

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           + D VR+L +      F       ++   +G  +F  QS  E    +T   E      + 
Sbjct: 62  ILDAVRELAEQPLSIEFTPENYTIKIVYQNGVYHFNAQS-AEEYPKTTPITEGATVITID 120

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           SSVL + + R  FA A +E+R  +NGI+F +  E   L  VA+DGH+L V    +     
Sbjct: 121 SSVLGDNLSRCLFATAQDELRPVMNGIYFDLTPES--LAIVASDGHKL-VRNKLLNIHNE 177

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
              + I+P+K  G +  ILS     V +        ++     +S RLI+G +PNY +VI
Sbjct: 178 MPATFILPKKPAGILKNILSKDGGDVIIKFDGRNAEISFADGFLSCRLIEGRYPNYNSVI 237

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMN 312
           P +N   + ++  +L  A+ RV   +S   Q ++  +   KL ++ ++ D    A ES+ 
Sbjct: 238 PQNNPNRVTIDRKSLLGALRRVLPFASDSSQLIRFHIEGGKLELSSEDIDFATSAKESVT 297

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372
             Y   PM I F    L EI+ N+ S     +EV+  L   + +  I          ++ 
Sbjct: 298 CEYIGTPMSIGFKGSSLSEILSNLES-----EEVIVELADPSRAGIIVP------GTQEE 346

Query: 373 KVNAFYVLMPM 383
             +   ++MPM
Sbjct: 347 NTDVLMLIMPM 357


>gi|315657690|ref|ZP_07910572.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
 gi|315492162|gb|EFU81771.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. holmesii ATCC 35242]
          Length = 380

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 156/391 (39%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ + R  + E +  + R I  +  + V   V ++A +  +E  +   E+     + A 
Sbjct: 1   MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G   V   LL +  R L   A +  F   +    ++I+ G     L      E+P
Sbjct: 61  EVTDPGVAVVDGKLLSETARALPSRADLVKFATED--NYLHITCGSFKQKLIMMHSEEYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +       ++ ++   + + +   A + +E    L GI   +  +  KL  +ATD +
Sbjct: 119 PLPQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLATDRY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234
           R+A+ E+           ++V  K + +  + +++    V+V++  +      I L    
Sbjct: 176 RMALKEMPWAGGQGGDQDLVVKAKNLSDAAKNIATA-GDVEVAVGSANNPASLIGLAANG 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
              + ++ DG +P+ + + P   +    V      +   RV+I+SS    Q + L  +S 
Sbjct: 235 RVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSG 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L     N     A +++    N   + + FN + LLE +  I      +          
Sbjct: 295 QLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAID-----EPYARLSFKDE 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V I G+ ++     ++ +   Y++MP+R
Sbjct: 350 AKPVVITGQKEE---TGEDNLTFRYLIMPIR 377


>gi|320355369|ref|YP_004196708.1| DNA polymerase III subunit beta [Desulfobulbus propionicus DSM
           2032]
 gi|320123871|gb|ADW19417.1| DNA polymerase III, beta subunit [Desulfobulbus propionicus DSM
           2032]
          Length = 376

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 91/391 (23%), Positives = 187/391 (47%), Gaps = 25/391 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
              + R D+L+ +G    I  +K T+ +  +VLL+     + +  +  EI +   +PA V
Sbjct: 4   HFNIGRDDLLKAIGAQQNITNKKGTLAILSNVLLEVQPDHIVLTGTDLEIGLKQRVPAEV 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G++T+ A  L+++ R+   G+ I   KE +    V IS G S + L      EFPS 
Sbjct: 64  LETGTLTLPAKKLFEVARE--SGSSILSLKELD-NNWVEISAGPSLYRLAGMVADEFPSF 120

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFH--INEEDLKLCAVATDG 178
                     + S +L +LV++T F++A + E  + L        + ++ + L  V +DG
Sbjct: 121 PAYNEEAMVIMESVILADLVDKTVFSIAQDKENMFTLTAAMLQKVMQDDHVMLKMVTSDG 180

Query: 179 HRLAVAEVDIVAQIAK---MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           HRL +   ++   + +    P  ++PR+ V EI +   +K +S+   + E +  L  +  
Sbjct: 181 HRLTIMSKEVETSLEQLHLNPITLIPRRGVQEIRKFCENK-TSLSFGVEEKQAVLKSDDS 239

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            + +RL++G+FP++Q ++   S +  +R++     +++ R+++ +     A+K+ ++ + 
Sbjct: 240 LLIIRLMEGDFPDFQGLLSVLSKENSIRIDRIRFLESLKRINLFTEDLFHAIKMDIADNT 299

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +T  N D G A +  NV Y+  P+ + FN +Y +E +  +  D      +   +++  
Sbjct: 300 MVLTSQNADFGSAKDEFNVEYSGPPLTLGFNCRYFIETLQVMEGDV-----ITASINTQE 354

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S   I           D       ++MPM++
Sbjct: 355 SPCMITS---------DEDKGFLSIIMPMKL 376


>gi|206895201|ref|YP_002246438.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus
           DSM 5265]
 gi|206737818|gb|ACI16896.1| DNA polymerase III, beta subunit [Coprothermobacter proteolyticus
           DSM 5265]
          Length = 361

 Score =  257 bits (657), Expect = 2e-66,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 178/386 (46%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I + + ++++ L    R + +K T PV  ++LL+A D  L+I  +  +  ++  I   
Sbjct: 1   MPIILRKEELIQSLEAVLRHVPKKTTQPVLYNILLEATDTALKITGTDMKSALSYKIALE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                  TV A    D V+K           EN     ++IS G ++  L + P  E+P 
Sbjct: 61  AAEELRTTVPAKFFSDFVKKAPGSEVQLEVGEN----YLSISSGSASLKLSTLPPEEYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAVATDGH 179
            +  +   +F + ++ LK  V+     ++  E+    L GI    +  +  L AV TDGH
Sbjct: 117 LEVLQG-NTFTVDAATLKKAVDAVKKNVSKGELRNPVLEGILL--DGSEGMLIAVGTDGH 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA  + D+        +  +P   + ++   L +  S+  ++  +  +    + +   +
Sbjct: 174 RLAACKTDLQV----TETACLPADVLSDVCDTLVNTGSTAYITFGDGEVAFENDVIYAVI 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R ++G+FP +++VIP + +  +R++   +   +DR  +++     AV+L+L    L ++ 
Sbjct: 230 RTLEGQFPPWRSVIPKTVETTVRLSKKTMGDVLDRAGMLAKTYDDAVRLTLEDGSLTISA 289

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + P++G  +ES+ V      + I  NY YL +++  I      +D VVF L S    + I
Sbjct: 290 EVPELGSFVESIPVDKEGPDLKIACNYAYLQDVLSGID-----EDNVVFGLTSPLHPIVI 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  + +         N   ++MPM++
Sbjct: 345 RPVESE---------NYVGLVMPMKL 361


>gi|11320919|gb|AAG33955.1|AF197895_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 366

 Score =  257 bits (656), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 101/382 (26%), Positives = 205/382 (53%), Gaps = 21/382 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +  + +++ L    R++ +  ++P+  +VL+   +G+L +  +  EIE+   I  S
Sbjct: 1   MKFIINNNILIKNLQKISRLLVKNTSLPILDNVLINIKNGMLSLTGTNLEIELVAMIQLS 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            + + G+ T+S   L DI R   + + I     N    +++I  G+S + L + P   FP
Sbjct: 61  TEHISGTATISGRKLLDICRNSLNSSNIEMQLNN---NKMHIISGNSRYILTTLPYDSFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  ++  F + S +LK ++E+  F+M  +++  YLNGI     + D  L AVATDG+
Sbjct: 118 VHHDFHHISEFFIPSDILKKMIEKIQFSMGKQDVPIYLNGILLE--KTDRSLYAVATDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +++  +   I    SI++PRK V E+ R+L+     +KV + ++ I ++IE L  + 
Sbjct: 176 RLGISKFFLKENII-PFSIVIPRKGVIELYRLLNIPKQPIKVLVGKNNIRVHIEDLIFTT 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++P+Y++V+  + +  + +N   L+Q++ R +I+S  +   V++ + + +  +  
Sbjct: 235 QLIEGQYPDYKSVLLENKNNFITLNSKLLKQSLLRAAILSHEKFCGVEIHIRNGQFKVLS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           DN +   A +  N+ Y    + I  N  Y++EI+++I+S     + +   L+++N+S+ I
Sbjct: 295 DNQEEEIAEDRFNINYTGNTVKISINVYYIIEILNSITS-----ENIFLFLNNANNSIQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLM 381
             +         N  +  YV+M
Sbjct: 350 EAE---------NDASILYVVM 362


>gi|116326857|ref|YP_796577.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116329804|ref|YP_799522.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
 gi|116119601|gb|ABJ77644.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis L550]
 gi|116123493|gb|ABJ74764.1| DNA-directed DNA polymerase, beta subunit [Leptospira
           borgpetersenii serovar Hardjo-bovis JB197]
          Length = 373

 Score =  256 bits (655), Expect = 3e-66,   Method: Composition-based stats.
 Identities = 88/390 (22%), Positives = 179/390 (45%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V  SD L+ +     +I  +    +  ++ ++A +  + + A+  EI I  ++ A 
Sbjct: 1   MKIKVNTSDFLKAIHAVEGVISAREIKSILSNLKVEAEEKEVFLSATDLEISIKTSLSAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH-----GDSNFYLQSFPE 115
           V   GSI++ A  L    + +     I   +E++  + +          D    +     
Sbjct: 61  VIQAGSISLPAKQLSSFFKTIHFEETILSLEESDGDSSIVYITDASGKNDYKSKISGMDA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E  +  +          S+++ +++ +T +A+A E+ R+  NG++     +  KL  V 
Sbjct: 121 EEIKTISKVSPSQISSFPSNLINDMIRKTSYAIAHEDQRFIFNGLYM--IPDGNKLTFVG 178

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDG RL   E  + + +    SIIVP KAV EI +++++ + +  + L +S+I+ +  ++
Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAVREISKMIATSE-TGNLGLIDSQIYASANNI 237

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +LI+G FPNY+ VIP S    + ++    + ++ +V   +    + VKL+ S + L
Sbjct: 238 ELLCKLIEGNFPNYEQVIPKSTKFSITISKEEFQVSLRQVLTAAEEPSRQVKLTFSKNNL 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +        +A  +  + Y+   + I F  +YL++I  +I      D+E+      S+S
Sbjct: 298 NLFAQTLGASEANINRPIEYSGNEIAIAFKGEYLMDIFRSID-----DNEIKIEFSDSSS 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V  +           +      V+MPM++
Sbjct: 353 PVIFKDP---------SDPEFISVIMPMKL 373


>gi|11320895|gb|AAG33943.1|AF197883_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 97/383 (25%), Positives = 198/383 (51%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  +     ++ L    R I +  + P+  ++L+   + +L +  +  EIE+   I   
Sbjct: 1   MKFNINNKIFIQNLQKINRFITKNISFPILENILISIKNDILSLTTTNLEIELIANIKLV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              V G+ TVS+  L DI R   + + ++         ++ I    S + L++ P   FP
Sbjct: 61  QHYVSGNTTVSSRKLLDICRHSLNSSNMNIEL---HANKIYIISDTSQYILRTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +     Y+  F + S++LK+++E+THF+M  +++RYYLNG+   +      L  VAT G+
Sbjct: 118 NHNNFHYISEFYIDSNILKSMIEKTHFSMGKQDVRYYLNGMLLEMINNS--LYMVATAGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL +    +   Q  +  SII+ RK + E+ ++L+     +K+ + ++ I + IE L  +
Sbjct: 176 RLGMTHTLLTKKQKIESFSIIMTRKGIIELYKLLNISRQLIKILIGKNSIRIYIEQLVFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY ++     +  + +NC  L+Q++ R +I++  +   V++ + +++  + 
Sbjct: 236 AQLIEGKFPNYDSLFLKKKNNGIILNCALLKQSLLRAAILTHEKFCGVEIYIKNNQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A ++ N+ Y    + I  N  Y+L+I+++I+S     + ++  L++SN+S+ 
Sbjct: 296 SDNQEEETAEDTFNINYIGPSIKISINVYYILDILNSINS-----ENILLFLNNSNNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +         N  +  Y++M
Sbjct: 351 IEAE---------NDASTIYIVM 364


>gi|325294209|ref|YP_004280723.1| DNA polymerase III, beta subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
 gi|325064657|gb|ADY72664.1| DNA polymerase III, beta subunit [Desulfurobacterium
           thermolithotrophum DSM 11699]
          Length = 365

 Score =  256 bits (655), Expect = 4e-66,   Method: Composition-based stats.
 Identities = 105/390 (26%), Positives = 185/390 (47%), Gaps = 30/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +  ++I   +       +++  IP+  ++L +A D +L++ A+  EI ++  I   
Sbjct: 1   MKIRISSNNIKSAVKKVFSAADKRGNIPILSNILFEAEDNILKLTATNLEIGVSTFIDCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  TV+A        KL        F+     +++ +   +S F L + P  EFP 
Sbjct: 61  VTESGKTTVNAQK----CAKLFSSLIGEEFEVETDDSKLIVKSANSRFSLATLPPEEFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +     +  +L+SS +   +++  +A++ +E RY L G++F    +  K+ AVATDGHR
Sbjct: 117 IEFP-ESFGVKLSSSDIDRAIKKVSYAVSKDEARYILTGVYFRSFGD--KIHAVATDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+   A+     S I+PRKA+ E+ ++L   D  +++   E++I   I        
Sbjct: 174 LALFEMKAEAE---EFSSIIPRKALSELKKLLKESDE-IELLGKENKIFFRIGDTLFWSS 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           +IDGE+P+Y  VIP  N  E       L  A+  VS++     I+AV L+L+   L +  
Sbjct: 230 VIDGEYPDYMAVIPEDNPLECIAIREELVNALKEVSVIYDKEEIRAVILNLTPGNLRLIA 289

Query: 300 DNPDMGKAIES----MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
              ++  A E     + V Y+    +I FN  +LLE + +        D +   +D   S
Sbjct: 290 RKMELDSASEEAEVNIPVEYSGEEFEIGFNINHLLEAVSSFDG-----DTIKILMDQPIS 344

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V I  +++    N         V+MPM++
Sbjct: 345 PVLIVSEEEPELKN---------VIMPMKV 365


>gi|304390482|ref|ZP_07372435.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
 gi|304326238|gb|EFL93483.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus curtisii
           subsp. curtisii ATCC 35241]
          Length = 380

 Score =  256 bits (654), Expect = 5e-66,   Method: Composition-based stats.
 Identities = 74/391 (18%), Positives = 156/391 (39%), Gaps = 21/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ + R  + E +  + R I  +  + V   V ++A +  +E  +   E+     + A 
Sbjct: 1   MELVLRRDTLAEAVAWSSRSISPRPAVAVLSGVRIEAGEDGVEFSSYDYEVSSRVTVAAE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G   V   LL +  R L   A +  F   +    ++I+ G     L      E+P
Sbjct: 61  EVTEPGVAVVDGKLLSETARALPSRADLVKFATED--NYLHITCGSFKQKLIMMHSEEYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +       ++ ++   + + +   A + +E    L GI   +  +  KL  +ATD +
Sbjct: 119 PLPQMPESAG-KVDAAAFAHSISQVAVAASRDETLPLLTGISLEVRPD--KLYLLATDRY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234
           R+A+ E+           ++V  K + +  + +++    V+V++  +      I L    
Sbjct: 176 RMALKEMPWAGVQGGDQDLVVKAKNLSDAAKNIATA-GDVEVAVGSANNPASLIGLAANG 234

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSD 293
              + ++ DG +P+ + + P   +    V      +   RV+I+SS    Q + L  +S 
Sbjct: 235 RVFTSQINDGNYPDVRRLFPEPINVTAVVKVDQFIETAKRVAIVSSNLSNQQISLRFTSG 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L     N     A +++    N   + + FN + LLE +  I      +          
Sbjct: 295 QLEFLAGNGAENSATDTIPALLNGPDISVSFNSRMLLEGLGAID-----EPYARLSFKDE 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V I G+ ++     ++ +   Y++MP+R
Sbjct: 350 AKPVVITGQKEE---TGEDNLTFRYLIMPIR 377


>gi|149174463|ref|ZP_01853089.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797]
 gi|148846573|gb|EDL60910.1| DNA polymerase III, beta chain [Planctomyces maris DSM 8797]
          Length = 376

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 91/389 (23%), Positives = 169/389 (43%), Gaps = 23/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-GAIPA 59
           MK++  RS +L        +I  +    V     L+A DG   +  +  E+ I       
Sbjct: 1   MKLSCSRSTLLSGFQIIGSVISSRTPKEVLKCAKLEAADGKATLSGTDLEVSIRFDFEEV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESE 117
            V V G I +S H L  I+R+    +     K++E   +  + I  G S F L     SE
Sbjct: 61  EVMVPGQILLSVHELVSILREAHTDSVEIELKKDEEADQDFILIQAGKSEFRLSVHDPSE 120

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP+ +       FE+     + ++ RT FA   E  RY L G+ F +  +  KL   ATD
Sbjct: 121 FPAVETFNESNFFEIPMQSFREMIRRTVFATDPESTRYALGGVLFDVEGD--KLTLAATD 178

Query: 178 GHRLAVAEVDIV---AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           G RLA+ E       ++  +    ++P KA+  I + L+  + ++++++  + + +    
Sbjct: 179 GRRLAMVESACSYQGSEAYENNRPVIPAKAMSLIEKSLTGDEGNIQIAIRANDVIVKSGR 238

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++  RL++G FP Y++VIP      + +       AV +  I++ V  + V    SS  
Sbjct: 239 STIFGRLVEGRFPKYRDVIPPEPTHSIDLEVGTFFGAVRQAQIVTDVETRGVDFVFSSGL 298

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +      +G++   + + +    + I F+ +YL + +  + S       +  +L  S+
Sbjct: 299 LTLKSVAASVGESKVEIPIPFEGEDIVITFDVRYLADFLKTLDSAA----HIRLQLIDSD 354

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S+  ++  D              YV+MP+
Sbjct: 355 SAAVLKTDD-----------GYTYVIMPL 372


>gi|89885797|ref|YP_515995.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
 gi|89347795|gb|ABD71997.1| DNA polymerase III, beta subunit [Rhodoferax ferrireducens T118]
          Length = 378

 Score =  255 bits (653), Expect = 6e-66,   Method: Composition-based stats.
 Identities = 108/391 (27%), Positives = 189/391 (48%), Gaps = 23/391 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLL-QANDGLLEIKASGPEIEITGAIPA- 59
           K+T  ++ +  LL     I+ R +++ +  +VLL   +DG +    +  E+E+       
Sbjct: 4   KLTSTQAQLYGLLQAVNGIVPRSSSLVILGNVLLNTCSDGRITAVGTDLEVEVNATQHVG 63

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S     S TV +  L DI++ + +   ++   EN     + ++  +  F L   P  +FP
Sbjct: 64  SFTGALSTTVESRKLMDILQTMANDEPVTLASENPD--HLVLTGANGTFKLSCLPADDFP 121

Query: 120 STK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +    Y  +F +   VLK L+E+T FAMA  +IRYYL G+ F +  E  +L    +DG
Sbjct: 122 RMEIAPNYQETFRIKQGVLKGLIEKTGFAMALHDIRYYLIGMQFVV--EGGRLTVCTSDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            R+A  EV + + I     +I+PRK+V E+ R+    D  V+V LS ++  +   +L   
Sbjct: 180 FRVATDEVAVESSIPTRREVILPRKSVLELKRLTRDTDDQVEVQLSANQARIRFGALEFV 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD----K 294
            +L++G+FP+ + V+P  ND  + ++ + L  A+ R +++ S ++  V+  L  D     
Sbjct: 240 TKLVEGKFPDIRAVVPQHNDNVVTLSRSALLLAIQRAAVIMSQKVNGVRFILDHDLISGH 299

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   N        SM V Y+   +DI FN KYLL+ +  +  D++V   + F      
Sbjct: 300 LKVESSNEKNETVDLSMPVEYSGPMVDIGFNVKYLLDALPTMEGDDLV---LAFSHTLVP 356

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +     D         +  Y+LMPMRI
Sbjct: 357 GAALMTLPSDD---------HFKYILMPMRI 378


>gi|258648469|ref|ZP_05735938.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259]
 gi|260851226|gb|EEX71095.1| DNA polymerase III, beta subunit [Prevotella tannerae ATCC 51259]
          Length = 374

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 101/387 (26%), Positives = 180/387 (46%), Gaps = 17/387 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  +  S +   L    R+I  K T+P+    +       LE+ A+  EI +   I   
Sbjct: 1   MKFVISSSVLSARLQSIGRVIAAKTTMPILNCFVFDIKSKRLELTAADNEITLRTYIDLV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D      V+A  + D ++++ +     F  E+ +   V   +G  NF  +S  E   P
Sbjct: 61  ESDADIRFAVNAKTIQDAIKEIPEQPLEIFVNESNMEITVEYQNGKYNFMAESADEYPIP 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               EE ++   + S  L N + R+ FA A + +R  +NGI+F +    L +  VA+DG 
Sbjct: 121 PALNEETMH-VNITSGHLLNAINRSLFAAANDPLRPVMNGIYFDLKTSGLTM--VASDGQ 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           ++A     +  ++ K  S I+P+K    +  IL  ++ ++ ++    R      +  M+ 
Sbjct: 178 KMA-CNTLVDIKVEKPGSFILPQKPATLLKNILGKEEDTIDMAFDGRRAVFKGTNFEMNC 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RL +G FPNY  VIP  N   + VN   L  A+ RV I S+     VKL++ + K+ ++ 
Sbjct: 237 RLTEGRFPNYAGVIPQDNPNIISVNREALIAALRRVLIFSNAVSSLVKLNIDNGKMRISS 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D    A E++   Y+  P+ I +   +LLE+++N+       +EVVF+L  ++ +  
Sbjct: 297 QDTDYSMSAEENLLCDYSGTPIKIGYRGPFLLELLNNLPG-----EEVVFKLGDASRAGL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +++         +   +LMPM I
Sbjct: 352 ILPTEQE------EGEDILMLLMPMMI 372


>gi|24753762|gb|AAN64010.1|AF434658_7 DNA polymerase III, beta subunit [Leptospira interrogans]
          Length = 373

 Score =  255 bits (652), Expect = 8e-66,   Method: Composition-based stats.
 Identities = 83/390 (21%), Positives = 180/390 (46%), Gaps = 22/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V  S+ L+ +     +I  +    +  ++ ++A      + A+  EI I  ++PA 
Sbjct: 1   MKIKVNTSEFLKAIHAVEGVITTREIKSILSNLKIEAEGKETFLSATDLEISIKTSVPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNIS----HGDSNFYLQSFPE 115
           V   G++++ A  L    + +  +   +S  + +   + V I+      D    +     
Sbjct: 61  VTQEGNVSLPAKQLSSFFKTIHFEDTNLSLEESDSNSSIVYITDASGKNDYKSKISGMDA 120

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E  +  + +        S+++ +++ +T +A+A E+ R+  NG++   N +  KL  V 
Sbjct: 121 DEIKTISKIDSSQVSSFPSTLINDMIRKTSYAIAHEDQRFIFNGLYMIPNGD--KLIFVG 178

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TDG RL   E  + + +    SIIVP KA+ EI +++++ +    + L + +I+++  ++
Sbjct: 179 TDGRRLCKIERTLPSPLQFKDSIIVPAKAIREISKMIATSEV-GNIGLIDGQIYVSANNI 237

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  +LI+G FPNY+ VIP +      ++    + ++ +V   +    + V+L+ S + L
Sbjct: 238 ELLCKLIEGNFPNYEQVIPKNTKFSTSISKEEFQVSLRQVLTAAEEPSRQVRLTFSKNNL 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +        +A  +  + Y+   + I F  +YL++I  +I      D+EV      +NS
Sbjct: 298 NLFAQTLGASEASINKPIEYSGDEVTIAFKGEYLMDIFRSID-----DNEVKIEFSDANS 352

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +           +      V+MP+++
Sbjct: 353 PIIFKDP---------SDPEFISVIMPVKL 373


>gi|160946605|ref|ZP_02093808.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270]
 gi|158446989|gb|EDP23984.1| hypothetical protein PEPMIC_00563 [Parvimonas micra ATCC 33270]
          Length = 368

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/384 (23%), Positives = 178/384 (46%), Gaps = 24/384 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I + ++++L L+  + R I  KN   +   +L    D  L +K++  E+ I  +    
Sbjct: 1   MEIKIMQNELLSLINISLRAISLKNNTSILEGILFIVKDNQLTLKSTDLELAIETSTECK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + ++A ++ +IVRKL +              +V I   ++ F + +     +P 
Sbjct: 61  VEKEGEVLLNASMISNIVRKLPNDEVYIKVDRE----KVFIQSENAKFNIIAMDIYSYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    F +  ++LK   ++T FA A ++ R  LNG+   I  ++  +  VA DGHR
Sbjct: 117 FPTFENKVDFYIQENLLKVATKQTIFAAAIDDYRIVLNGVDVEIENKN--VDFVALDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A     I   I K   +I+P +A+ EI +I+    S V VSL +       E+   S R
Sbjct: 175 IAKRSFKIEEDIEK--KVIIPPRALNEISKIVPEG-SVVGVSLVKGSAIFTFENTIFSTR 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTV 299
           +IDGE+ NY+ +    +  ++ V   +L  A++R +I+  + +   V  ++    + +  
Sbjct: 232 VIDGEYLNYKALFSYEHKTKVTVARRDLINAIERANIIYKAEKGDLVTFTIDDSSILVE- 290

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + ++G   + +++      + I FN KY+LE +  I       D V    +    +  I
Sbjct: 291 GSSEIGDLKDIIDIKKEGDNLKIAFNSKYVLEGLKTIE-----QDFVEITFNGRAGACII 345

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
           + +D+         ++  Y+++P+
Sbjct: 346 KPEDE--------NIDYTYLVLPV 361


>gi|227485758|ref|ZP_03916074.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus
           ATCC 51172]
 gi|227236313|gb|EEI86328.1| possible DNA-directed DNA polymerase [Anaerococcus lactolyticus
           ATCC 51172]
          Length = 370

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 175/387 (45%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +++ ++++ L    R + +   I +   +     +  L + +   EI I     A 
Sbjct: 1   MKFEIKQKELMKALNIVNRAVSKSTNIQIHELIYFSTENNRLSMTSFDGEISIKTLADAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + V A L+ +I+RKL D       K    G ++ IS   SNF L +F   +   
Sbjct: 61  IIKEGVMAVKADLITNIIRKLPD----ELVKIELDGGKIKISCKRSNFNLVAFEYFDKEE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + +  LK  + +T FA   +E +  L GI F + E  L +  VA DG+R
Sbjct: 117 I-NIPNTVALSIDNDKLKRSISQTEFATTLDETKLALTGILFELKEGCLNM--VALDGYR 173

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +      +    I+P++++ E  RI+S  DS   +  +E+ +    E   M  
Sbjct: 174 VALKKIKLDYPGDFEDTEYIIPKRSLLEWSRIVSD-DSKTSLYRNENDLLFASEDTIMLC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           ++ID  F +Y+N+I   ++  + V  + L  A+DR  ++S   R   +++++    + + 
Sbjct: 233 KVIDKNFIDYRNIINDISETTVLVEKSALIAALDRAQVLSDPGRANLIRVNIEDRAMTLR 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E + +      +DI FN KY+ + +    S     +++     SS +   
Sbjct: 293 S-NSEIGDVKEVIEIDQEGEGLDIAFNAKYMQDGVRACDS-----EKIKLNFKSSLNPCL 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   D     +K    +  Y+++P+R+
Sbjct: 347 IYPTD-----SKHEGEDYTYLVLPVRL 368


>gi|313157008|gb|EFR56440.1| DNA polymerase III, beta subunit [Alistipes sp. HGB5]
          Length = 374

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 182/388 (46%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK +V  S +L LL    ++I  KNT+P+  + L++ +   L++  S  E  + G+I   
Sbjct: 1   MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELSGNELKVTTSDLETTLIGSITVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           SV+  G+I   A L+ D +++  +         N+   E+ I+    +  +       +P
Sbjct: 61  SVESEGTIAAPAKLMLDSLKEFSELPLTIDV--NDKNWEITINWKSGSLSIPGASAVSYP 118

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  +         +    L N + +T FA A +E+R  +NGI+ ++    L    V TD 
Sbjct: 119 AVPQLSAEKKELSMDVDTLVNGINKTIFATADDELRPVMNGIYINLAPGALTF--VGTDA 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   E +   ++    S I+P+K    +  +L  +D ++++S         ++S ++ 
Sbjct: 177 HKLVKYESETANEV--TASFILPKKPANLLKSVLLKEDDAIEMSFDSKNALFKLKSHTLV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  VIP +N  ++ V+   L   + RV++ S+     +++ +  +++ +T
Sbjct: 235 CRLIEGNYPNYNAVIPANNPNKVLVDRVELVNGIKRVAVCSNPTTNLIRMDIGDNRINLT 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+++  Y+   + I F   +L+EI+ N+ +       VV  L  S  + 
Sbjct: 295 AQDIDFSVSANETISCSYDGEEITIGFKSTFLVEILSNMDTPT-----VVIELADSTRAG 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +    D + +     +   +LMPM I
Sbjct: 350 VFKPVYDDKQTS-----STLMLLMPMMI 372


>gi|154249882|ref|YP_001410707.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1]
 gi|154153818|gb|ABS61050.1| DNA polymerase III, beta subunit [Fervidobacterium nodosum Rt17-B1]
          Length = 367

 Score =  255 bits (652), Expect = 9e-66,   Method: Composition-based stats.
 Identities = 90/386 (23%), Positives = 187/386 (48%), Gaps = 25/386 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-S 60
           K TV +S+I + +  A   I  +   P+   +L +  +G + I A+  +  +   +    
Sbjct: 3   KFTVSKSEIEKKISIASSAIGSRTVDPILQCLLFKPLNGHINIYATDLQTSVISQVQVGE 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FP 119
            +   +  V A L+ DIVR L +   I  +       ++ +  G + + + +  + E FP
Sbjct: 63  YEGNDAFAVDAELVDDIVRNLPEDEFIFEYS----NGKLLVRSGKAKYNITTVSDIERFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +E    F + +S+L+ ++++  F  ++E     LNG+++ I+   L+L  VA+DG+
Sbjct: 119 IVDTDESGIKFSVETSILEEMLDKVSFCASSESAMRALNGVYWEIHGGFLRL--VASDGY 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK-VSLSESRIHLNIESLSMS 238
           RL +AE  +   +      I+  K++ E+ ++LSS    V  ++   S +  N   ++  
Sbjct: 177 RLGLAEQKL--NLENEFDFIIALKSIKELEKLLSSTTEPVINITYDHSLVSFNAGDVTTI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           VR ++  FP+Y+ V+P +    + +N  +  +A+ RV ++S    + V+L ++ D + +T
Sbjct: 235 VRTVEETFPDYKRVLPKAFKTRVILNLDDFSEALKRVMVISKRGNEKVQLKITDDLMELT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             + D G+A+ES+ +  +   + + FN K+L E + +I      + E+ F    + S + 
Sbjct: 295 SQSSDFGEAVESIPITKDGEDLIVNFNPKFLNEPLKHID-----EKEIEFNFVDNLSPLQ 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I         N  N     Y+++P+R
Sbjct: 350 I---------NPRNVGGYIYIVLPVR 366


>gi|167753684|ref|ZP_02425811.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216]
 gi|167658309|gb|EDS02439.1| hypothetical protein ALIPUT_01965 [Alistipes putredinis DSM 17216]
          Length = 374

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 94/388 (24%), Positives = 182/388 (46%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V  S +L LL    ++I  KNT+P+  + L++     L +  S  E  + G+I   
Sbjct: 1   MKFSVSSSALLSLLATTGKVISNKNTLPILDYFLMELKGDELRVTTSDLETTLVGSIRVD 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+I   A L+ D +++  +       + N+   E+ +S    +  +       +P
Sbjct: 61  GVESEGTIAAPAKLMLDSLKEFAEMP--LTIEVNDQNWEIRLSWKSGSLSIPGASAVSYP 118

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +            L   VL N + +T FA A +E+R  +NG++ ++      L  V TD 
Sbjct: 119 AIPALSADCKELTLDVDVLVNGINKTIFATADDELRPVMNGVYINLAPS--MLTFVGTDA 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   EV+   ++A   S I+P+K    +  +L  ++ ++KVS         +++ ++ 
Sbjct: 177 HKLVKYEVETANEVA--SSFILPKKPANLLKSVLLKEEDAIKVSFDSKNAMFQLKNHTLV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  VIP +N  ++ V+   L   + RV++ S+     +++ ++ +++ +T
Sbjct: 235 CRLIEGNYPNYNAVIPTANPNKVLVDRIELVNGIKRVAVCSNPTTNLIRMDIADNRINLT 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E+++  Y    + I F   +L+EI+ NI +       +V  L  S  + 
Sbjct: 295 AQDIDFSVSANETISCSYEGQNITIGFKSTFLVEILSNIDTPT-----IVIELADSTRAG 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +    D +++         +LMPM I
Sbjct: 350 VFKPVYDDKQSSA-----TLMLLMPMMI 372


>gi|329944739|ref|ZP_08292818.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
 gi|328529875|gb|EGF56765.1| DNA polymerase III, beta subunit [Actinomyces sp. oral taxon 170
           str. F0386]
          Length = 350

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 76/363 (20%), Positives = 141/363 (38%), Gaps = 21/363 (5%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
           +PV   V L+A    L + +   E+     + A V+  G + VS  LL DI + L +   
Sbjct: 1   MPVLAGVRLEAKGSSLVLASFDYEVSAHCEVVADVEEDGVVLVSGRLLADIAKALPNKPV 60

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHF 146
               +    G +V +S G + F L +    ++P+      V    + +  L   V +   
Sbjct: 61  DLEVE----GNKVAVSCGSARFSLAAMAADDYPALPVMPAVAG-TIDAHDLARAVAQVSI 115

Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAV 205
           A + ++    L  +   +    L L  +ATD +RLA+ E+    A      + ++  + +
Sbjct: 116 AASRDDTLPLLTSVQIEVEGSSLVL--MATDRYRLAMRELTWSPANTDLSTTALLKARTL 173

Query: 206 GEILRILSSKDS----SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL 261
            ++ + L+S           S + S I         +  L DG++P  + + P S     
Sbjct: 174 SDVAKSLTSSGDVTVALSSESAASSLIGFEAGGRRTTSLLTDGDYPPVRRLFPESTSIHA 233

Query: 262 RVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMD 321
            V    L  AV RVS+++  R   + +S +   L +     D  +A E +  +     + 
Sbjct: 234 TVGTDELMAAVRRVSLVA-DRSTPIHMSFTQGNLELDAGQGDDAQATEQLVAHLEGDDIS 292

Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
             FN  YLL+ +  ++        V      ++    + G D              Y+LM
Sbjct: 293 TAFNPGYLLDGLGALN-----QPYVRLDFTHASKPAVLTGMDS---IGGTEDSTFRYLLM 344

Query: 382 PMR 384
           P+R
Sbjct: 345 PIR 347



 Score = 61.4 bits (148), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 27/180 (15%), Positives = 61/180 (33%), Gaps = 19/180 (10%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEIT--GAIPAS 60
           T++  D+   +        R +T+P+   V ++     L + A+    + +      PA+
Sbjct: 100 TIDAHDLARAVAQVSIAASRDDTLPLLTSVQIEVEGSSLVLMATDRYRLAMRELTWSPAN 159

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPESE 117
            D+  +  + A  L D+ + L     ++    +E      I   + G     L    + +
Sbjct: 160 TDLSTTALLKARTLSDVAKSLTSSGDVTVALSSESAASSLIGFEAGGRRTTSL--LTDGD 217

Query: 118 FPS----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           +P       E   +++      ++   V R                I     + +L+L A
Sbjct: 218 YPPVRRLFPESTSIHATVGTDELMA-AVRRVSLVADRS------TPIHMSFTQGNLELDA 270


>gi|87198663|ref|YP_495920.1| DNA polymerase III beta subunit family protein [Novosphingobium
           aromaticivorans DSM 12444]
 gi|87134344|gb|ABD25086.1| DNA polymerase III beta subunit family protein [Novosphingobium
           aromaticivorans DSM 12444]
          Length = 415

 Score =  255 bits (651), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 105/397 (26%), Positives = 181/397 (45%), Gaps = 50/397 (12%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-----------VDVCGSITVSAH 72
           K+TIP+   V ++A+DG+L +     +  I  ++P S                +  V A 
Sbjct: 34  KDTIPILNTVRMEASDGVLTLTGCDLDQWIIRSLPTSDREPNSAEWLASIRPFATCVPAR 93

Query: 73  LLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFEL 132
            L  IV+++   A ++     +  + V I+ G S F +   P  +FP     ++ +SF +
Sbjct: 94  ALLAIVKQIDADAMVTVAGPTDKESRVTITAGRSRFRVACLPVDDFPFPTRPDFEHSFSI 153

Query: 133 ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI 192
           A+  L+++  R   A++TEE RYYLNG++ H   +DL     ATDGHRLA    D     
Sbjct: 154 AAGALRDVFARVEHAISTEETRYYLNGVYMH--PQDLDQRFAATDGHRLARLVQDGPDGA 211

Query: 193 AKMPSIIVPRKAVGEILRILS---------SKDSSVKVS------LSESRIHLNI----- 232
           A  P++I+ R+ V  + ++L          S D+    S       S+S   +       
Sbjct: 212 ASFPAVIIGRRTVAVLDKLLDAAGKVDTSTSDDADKACSRPMVEVDSDSNGRVIYWAMPA 271

Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
                +++  + +DG FP+Y  VIP +    L V+   L  A+ RV+ + S + +AVKL 
Sbjct: 272 PDGGEVTLIAKTVDGTFPDYARVIPSAPSSFLTVDREALLAAIKRVAAVCSDKTRAVKLE 331

Query: 290 LSS-DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           L   +K  ++  +P++G A+E +   Y   P+ I FN  Y    +       V  D+V+ 
Sbjct: 332 LDGAEKAIVSTASPEIGDAMEEIACEYAGEPLTIGFNGDYWRSCLSA-----VATDKVLM 386

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   +     I  +  +S   +        VLMP+R+
Sbjct: 387 KFTDAGGPCRIEAEGGESALVQ--------VLMPLRV 415


>gi|312134084|ref|YP_004001422.1| DNA polymerase III subunit beta [Caldicellulosiruptor owensensis
           OL]
 gi|311774135|gb|ADQ03622.1| DNA polymerase III, beta subunit [Caldicellulosiruptor owensensis
           OL]
          Length = 368

 Score =  254 bits (650), Expect = 1e-65,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 169/389 (43%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V++  + + +              +   +L++A D  +    +  ++++     A 
Sbjct: 1   MKFVVDKDILQDNISKVIPAAASTKVTSILECILIEAEDS-IVFTTNDMKMQMQTEFEAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  V A L  DIV+KL DG      ++NE    V I      F L +    +FP 
Sbjct: 60  ILERGAALVKAKLFSDIVKKLPDGDVEVIREDNE----VRIRSQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             ++      E  +S   + ++R  FA + +E R    G+ F   E+D  +  V  DGHR
Sbjct: 116 MDKKPAESFCEFVASEFVDSIDRVIFATSKDETRPTFTGVLFERQEDDF-VNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++    ++    S IVP   + +I +I+  +D   V+VS  E++    I S ++ V
Sbjct: 175 LAICKIK-PVEVEGSFSKIVPADNLDDITKIIDIEDAEKVRVSFYENQATFEIGSTTVIV 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296
            LI G+F +Y++ IP      + ++   L   ++R SI+S      IQAV    +     
Sbjct: 234 TLIAGKFFDYKSAIPTEYSTRISISTDVLESTLERASIVSKDEKTNIQAVIFETNGMIFK 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + D G+  E +        + I FN KY L+++  +        E+   + S  S 
Sbjct: 294 VYSMSAD-GRYEEDVLCSVEGKDIKIGFNVKYFLDVLKVLDG------EINLFITSQTSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D +         N  Y+++P+++
Sbjct: 347 SIVQKPDDE---------NYIYLVLPIKM 366


>gi|118602062|ref|YP_903277.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
 gi|118567001|gb|ABL01806.1| DNA polymerase III, beta subunit [Candidatus Ruthia magnifica str.
           Cm (Calyptogena magnifica)]
          Length = 367

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 108/386 (27%), Positives = 197/386 (51%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +   ++L  L     ++E+K  +P+  HVL+Q  D LL +  +  EIEI  +    
Sbjct: 1   MNIQLTVKELLTPLQIVISVVEKKQKLPILSHVLIQLKDNLLTLTTTDMEIEIRASQIIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                S T+ A  L DI++KL   ++    +     +++ I    ++F L +    +FPS
Sbjct: 61  NQEEISFTIYAKDLIDIIKKL---SEDIIIEFIIESSKIYIKVNKNSFELNTSNHQDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +     ++   VLK+L+E T F+M +++IR YLNG++  I++    +  VATDGHR
Sbjct: 118 LPKIKNSDIIKIKRHVLKDLIENTSFSMGSQDIRTYLNGLYLEIDKNS--IVVVATDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           L++ +V     ++   S+I+PRKAV E+ ++L+      + + LS++  +L   + ++  
Sbjct: 176 LSIGKVKQTHNLSNKKSVILPRKAVFELTKLLNKNGYKEIDIHLSDNYFYLISNNTTIIS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG FPNY  V+P + +  + +N      ++ + SI    R + VKL   + KL +  
Sbjct: 236 RLIDGNFPNYLQVLPTNFNNIIIINRLAFLNSLQQASIFVEERTKGVKLVFKNSKLHIFS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + + G+A   +N+   +  ++I FN  YL+ I++ + ++E+         D  + S  +
Sbjct: 296 HS-ERGQAKTQINIKNFDKEIEIAFNINYLISILEKLHTNEINM----IVPDGKSQSCLL 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + D            YV+MPMRI
Sbjct: 351 SSMNDDI---------YQYVVMPMRI 367


>gi|239787351|emb|CAX83828.1| DNA polymerase III subunit beta [uncultured bacterium]
          Length = 372

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 97/389 (24%), Positives = 191/389 (49%), Gaps = 25/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV R   ++ L     +IE+K  +PV  H LL+A    + I  +  +I I+    A 
Sbjct: 1   MQFTVSRKKFVQALSFVPSVIEKKTALPVLSHCLLKAAGDKVTIVGTDLDIVISEECRAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
             + GS+ V   LL+DIV++L+    +SF  E+    ++ +  G S F L   P  +FP 
Sbjct: 61  TQIEGSLCVPGVLLHDIVKRLEGYDTLSFSHED----QLFLRCGRSEFRLSVLPAEQFPD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +      F +  +VLK +++     M  ++    LN +F H   E   L  V+TD H+
Sbjct: 117 VSQLPLTTIFNVNPAVLKKMIDEVRLCMIDDDQNVMLNSLFLHTTNESGDLYGVSTDLHQ 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS---- 236
           LA++++ +  ++     ++V RKA+ EI R+L   D++ +V+L  S   +  + ++    
Sbjct: 177 LALSKISLEKKLDLQTGLVVGRKAITEIRRLLLD-DNAKQVTLGASHARIQCDVVTDDLV 235

Query: 237 --MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              + RL+DG +P Y  V+   ++  +  N + L+ A++R+ ++  +  + + L+ S++ 
Sbjct: 236 IMFTARLVDGIYPEYLKVVESMSETSIVFNRSVLQSALERMIVVVDIMSKGIMLNFSNNL 295

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + MT  + D G   E + + ++  P  I  N  YLL ++  I +     ++V    D+ +
Sbjct: 296 MTMTAVSVDSGSGKEELEIKFDGDPFTIQVNAFYLLNMVKQIDT-----EQVEIHADNPH 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            ++ I+    +  +         Y++MP+
Sbjct: 351 EAMHIKPFGLEYPH---------YMIMPL 370


>gi|296392442|ref|YP_003657326.1| DNA polymerase III subunit beta [Segniliparus rotundus DSM 44985]
 gi|296179589|gb|ADG96495.1| DNA polymerase III, beta subunit [Segniliparus rotundus DSM 44985]
          Length = 397

 Score =  254 bits (649), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 93/401 (23%), Positives = 171/401 (42%), Gaps = 31/401 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPASV 61
             V R    + +    R +  +  +P+   +LL A++ G L +  +  ++     + A V
Sbjct: 8   FEVPRDLFADSVSWVTRRLPARPAMPLLAGLLLSADETGELSLGGTDYDLTAQAHLSAQV 67

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + VS  LL DI + L   +     +    GT+V++  G + F L S P  EFPS 
Sbjct: 68  SGPGKVLVSGRLLADIAKALPSPSVRIATE----GTKVHVRSGSAKFTLPSMPVDEFPSL 123

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E         A  +    + +   A + ++    L G+     +E ++L   ATD  RL
Sbjct: 124 AEHPTPIGSAQAKELFA-AISQVGVAASRDDTLPALTGLRLVFTQEGIEL--AATDRFRL 180

Query: 182 AVAEVDIVAQ--IAKMPSIIVPRKAVGEILRI-LSSKDSSVKVSLSE-----SRIHLNIE 233
           +V ++    +    +  + +VP   + E  R  L + D+ V+ +L +     S + +   
Sbjct: 181 SVRKLVWDGKGVGEEPLTALVPAAVLSEFARTQLETDDAPVEFALDQGAGSPSLLGVQAG 240

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
              ++ RL+D + P+   +IP       RV    L +AV RVS++S+ R Q ++L     
Sbjct: 241 PFRITTRLLDAQLPDVSQLIPKRYSSLARVELAPLVEAVRRVSLVSARRSQ-IRLDFQGS 299

Query: 291 -SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            S   L ++    + G A E + V +   P+ + FN  YLL+ +     +        F 
Sbjct: 300 GSDALLKLSAGAEEAGFAEEELAVQHWGEPISVVFNPGYLLDGLSTFRGECG-----QFG 354

Query: 350 LDSSNSSV-FIRGKDKDSKNNKD----NKVNAFYVLMPMRI 385
               N +V  + G   + +   +    +  +  YVLMP+R+
Sbjct: 355 FTGPNRAVALVTGDGPEPEETAEGYTADAPDQVYVLMPVRL 395


>gi|284047390|ref|YP_003397729.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM
           20731]
 gi|283951611|gb|ADB46414.1| DNA polymerase III, beta subunit [Acidaminococcus fermentans DSM
           20731]
          Length = 375

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 168/389 (43%), Gaps = 20/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ + E  ++ + +    R I   N  P+   +        L++ A      +   +  +
Sbjct: 1   MQFSCESKELAQSVNIVKRAISSSNNAPIFSGIHAILQGNTLQLIAMDNTYMMNKKLDVN 60

Query: 61  VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +  G + + A  + D++ +   D          E    +  +     +++      E+P
Sbjct: 61  GEEDGELLIPAKAIGDLLARFDPDEVLTVQQLPGEKEMTLKAAKARGQYHIPLMDPEEYP 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +   + +L   ++  L+  T +A +T+  R    G++   + +   L AV T+ H
Sbjct: 121 AMPLLQGDRTLQLPEEIMGKLISTTVYACSTDASRPLYTGVYLEKSGQ--HLTAVGTNTH 178

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMS 238
           RLA+ EV++        S+++P + + EI   L+ +    V ++L E +I   + SL++ 
Sbjct: 179 RLAIKEVELPEGDDSEFSMLIPARLLKEIGSNLNGELPEPVVLTLKERQIMAQVGSLTII 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI+G+FP+Y+  IP S       N  ++ +A+ RVS+ S      V+L++ +D + ++
Sbjct: 239 SSLIEGKFPDYKRPIPPSFSNRTVFNRVDMEKAIQRVSLFSQSDYNIVRLAIDADGITLS 298

Query: 299 VDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
               DMG+  E +         P++I FN +Y+ +   N  +     D V    + S S 
Sbjct: 299 SAVSDMGQGKEIIACQTVGDNLPLNIAFNSRYMTDFFKNCGT-----DRVSLETNQSLSP 353

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  +  +S           Y+L P+R+
Sbjct: 354 ARLMPEGDES---------YTYILTPVRV 373


>gi|323342256|ref|ZP_08082488.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix
           rhusiopathiae ATCC 19414]
 gi|322463368|gb|EFY08562.1| DNA-directed DNA polymerase III beta subunit [Erysipelothrix
           rhusiopathiae ATCC 19414]
          Length = 372

 Score =  254 bits (648), Expect = 2e-65,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 169/391 (43%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK  +++    + L    R     + +P+   +  +  D  L + AS   I I   +   
Sbjct: 1   MKFNIKKQSFYKALSSVGRAASTHSPLPILSGIKFELRDDALTLIASDSNISIKEVLYAN 60

Query: 58  ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                +V   G + + +  + + VRKL D   I F   +  G    IS   + + +    
Sbjct: 61  DENKLNVYEEGEVVLESRYILEAVRKL-DSDFIDFEIID--GALTRISGNKAEYNINGSK 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P+    +    F++    L  ++++T F  +T E R    G+ F    +   +  V
Sbjct: 118 AELYPTIDFTKPTKEFKMPGFKLSEVIQQTAFVCSTSEDRPIFTGVNF--KADGNTMNCV 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD +RLA   +D+   +    +I +P   + E+ + +S  +  V +++S+  +   ++S
Sbjct: 176 ATDSYRLAKKSIDLPTPMD--FNICIPAVNLYEVSKTISD-NKDVHIAVSDKLVQFYVDS 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG FP+   +IP     EL VN  ++  A+DR S + S     VKL  S++ 
Sbjct: 233 TLIQSRLIDGLFPDVNRLIPAEYGFELTVNSHDMISAIDRSSFLKSDGYWTVKLEASNEG 292

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + ++  + ++G + E +  + Y    + I F+ +Y++E + +  +     D V       
Sbjct: 293 VLISSKSQEIGSSEEILKPIDYIGGNLKISFSGRYMIEALKSFKT-----DTVKILFVGE 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +  ++  + DS            +++P+R
Sbjct: 348 MQAFILKNPEDDSIVQ---------LVLPVR 369


>gi|153830817|ref|ZP_01983484.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39]
 gi|148873701|gb|EDL71836.1| DNA polymerase III, beta subunit [Vibrio cholerae 623-39]
          Length = 250

 Score =  253 bits (647), Expect = 3e-65,   Method: Composition-based stats.
 Identities = 83/253 (32%), Positives = 141/253 (55%), Gaps = 7/253 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + ++P+  ++LL+  +  L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGTLGGRASLPILGNLLLKVEENQLSMTATDLEVELISRVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G ITV A    DI R L D A I+   E   G  + +  G S F L + P S+FP
Sbjct: 61  GEFEAGCITVPARKFLDICRGLPDSAVITVLLE---GDRIQVRSGRSRFSLATLPASDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + ++ +      L  + L+ L+E+T F+MA +++RYYLNG+ F I  +   L +VATDGH
Sbjct: 118 NIEDWQSEVQVSLTQAELRGLIEKTQFSMANQDVRYYLNGMLFEI--DGTTLRSVATDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           R+AVA+  + A  A+   IIVPRK V E++++L + +  V + +  S +   +     + 
Sbjct: 176 RMAVAQAQLGADFAQ-KQIIVPRKGVLELVKLLDAPEQPVVLQIGHSNLRAEVNHFVFTS 234

Query: 240 RLIDGEFPNYQNV 252
           +L+DG FP+Y+ V
Sbjct: 235 KLVDGRFPDYRRV 247


>gi|17158705|ref|NP_478216.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120]
 gi|17134654|dbj|BAB77212.1| DNA polymerase III beta subunit [Nostoc sp. PCC 7120]
          Length = 456

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 102/393 (25%), Positives = 187/393 (47%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK+++E+S + E+L  A   I  K T P+  ++LL A  DG++    +   + I     A
Sbjct: 1   MKLSIEQSKLAEILETAYFAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V+  G + + A LL D +  ++   +I+   EN+      I+H      L      EFP
Sbjct: 61  NVETSGQVALPAKLLTDTINNVRG--EITLEVENQA---CIITHNSGKCRLIGGKPDEFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E      L++  L+  +E T +    +E +  L G+ F I  +  K  A +T+GH
Sbjct: 116 TLPKGENPIEVNLSAKKLQAALEGTLYCTNGDETKLVLTGVNFKI--DTNKWQAASTNGH 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVK-VSLSESRIHLNIESLSM 237
           +LA+    + ++ +      VP K++ E+ +ILS S D+SV  + LS   I  ++    +
Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLSELSKILSQSADTSVCNILLSNKTIEFSLPHTKV 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295
             RL++GE+P   ++IP + + E  +       A+ RVS ++  + + VK+   L + + 
Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293

Query: 296 CMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +  +  D+G A++S+       +   + I  N  YLLE + +IS+     DE+V R + 
Sbjct: 294 TLYTEATDIGDAVDSVLMKPATNHSENISIGLNIDYLLEGLKHIST-----DEIVVRCNK 348

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               V I              +N  Y++MP+ I
Sbjct: 349 PTQPVIICPMG--------GLLNQLYLVMPVEI 373


>gi|315650191|ref|ZP_07903266.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum
           DSM 3986]
 gi|315487548|gb|EFU77856.1| DNA-directed DNA polymerase III beta subunit [Eubacterium saburreum
           DSM 3986]
          Length = 383

 Score =  253 bits (646), Expect = 4e-65,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 173/385 (44%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +  +++ ++  L    + +  K    +   +L+ A D  + + A+  E+ I   + A 
Sbjct: 15  MNLKFQKTQLVNALSIVMKAVSTKTASVILESILINATDNRVVLDATDNELSIQTEVDAI 74

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + ++A L  +IVRK +D   +    + +   +  +    + F +      EF  
Sbjct: 75  IVEEGGVVLNAKLFSEIVRKFEDNESLI-ELDVDKDFKTTVKCEQAVFNIMGIDPVEFIP 133

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   S +++   LK ++ +T F+ A  +I   + G    + +   K   V  DGHR
Sbjct: 134 MPNIKRDDSIKMSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNVAKF--VTLDGHR 191

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSV 239
           +++  ++++ +       +VP K++ EI+RI+ S    +V +  S+  I    +   +  
Sbjct: 192 MSIRNINLIGEYED-HRCVVPVKSLQEIMRIIGSDTQKNVNIYFSKDHILFEFDRTLVLS 250

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           R++DGEF   ++++    D ++ V+    + A+++  I+        + L + +  L ++
Sbjct: 251 RILDGEFFRIESMLSRDYDTKVTVSRLKFQSAIEQSMILIRENEHKPMILDIENGMLKIS 310

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++  +G     +N+  +   + I FN K++++ +  I      DD V     ++ S  F
Sbjct: 311 VNSS-LGFMDTKVNIEKSGSDLKIAFNPKFVVDALKVID-----DDFVDIYFTNAKSPCF 364

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          DN+    Y+++P+
Sbjct: 365 IR----------DNENTYTYLILPV 379


>gi|75812736|ref|YP_320353.1| DNA polymerase III beta subunit family protein [Anabaena variabilis
           ATCC 29413]
 gi|75705492|gb|ABA25164.1| DNA polymerase III, beta chain [Anabaena variabilis ATCC 29413]
          Length = 444

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 104/393 (26%), Positives = 188/393 (47%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK+ +E+S + E+L  A   I  K T P+  ++LL A  DG++    +   + I     A
Sbjct: 1   MKLNIEQSKLAEILETAYLAISPKPTDPILGNILLIANEDGIVSATGTNLNLTIHTTTTA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V+  G + + A LL D +  ++   +IS   EN+      I+H      L      EFP
Sbjct: 61  NVETSGQVALPAKLLTDTINNVRG--EISLEVENQA---CIITHNSGKCRLIGGKPDEFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E      L++  L+  +E T +    +E +  L G+ F I  +  K  A +T+GH
Sbjct: 116 TLPKGENPIEVNLSAKKLQTALEGTLYCTNGDETKLVLTGVNFKI--DTNKWQAASTNGH 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVK-VSLSESRIHLNIESLSM 237
           +LA+    + ++ +      VP K++GE+ +ILS S D+SV  + LS   I  ++ +  +
Sbjct: 174 KLALVTGTLDSEYSDPIDFTVPGKSLGELNKILSQSADTSVCNILLSNKTIEFSLPNTKV 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL--SLSSDKL 295
             RL++GE+P   ++IP + + E  +       A+ RVS ++  + + VK+   L + + 
Sbjct: 234 ISRLLEGEYPKINSLIPRTFEYEFTLERKGFESALKRVSYLAERKQKVVKILWELEATQA 293

Query: 296 CMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +  +  D+G A++S+       +   + I  N  YLLE + +IS+     DE+V R + 
Sbjct: 294 TLYTEATDIGDAVDSVLMKPTTSHSENISIGLNIDYLLEGLKHIST-----DEIVVRCNK 348

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               V I              +N  Y++MP+ I
Sbjct: 349 PTQPVIICPMG--------GLLNQLYLVMPVEI 373


>gi|212697387|ref|ZP_03305515.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM
           7454]
 gi|212675579|gb|EEB35186.1| hypothetical protein ANHYDRO_01957 [Anaerococcus hydrogenalis DSM
           7454]
          Length = 375

 Score =  252 bits (645), Expect = 5e-65,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 176/387 (45%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++ D+   +  A + + RK  I +   +  +A +  L + +S  EI I   +  +
Sbjct: 6   MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVACN 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + ++A+++ +IVRKL D        +    +++ I    S F + +F   E   
Sbjct: 66  VIEEGEMAINANIISNIVRKLPDELIKIEVVD----SKIKIKCNGSKFNILAFDYYEKKD 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K    V   E+ +  LK  + +T FA + +E +  L GI F +   D  L  VA DG+R
Sbjct: 122 LK-VPNVDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFELM--DGYLNFVALDGYR 178

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +          +I+PRK++ E  RI+   +   K+   +  I       +M  
Sbjct: 179 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           ++ID  + +Y N+I   +   L V+   L  +++R  ++++  R   +K+++  DK  + 
Sbjct: 238 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDKCLIE 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E + +      + I FN +YL+E +    +       +   L SS +   
Sbjct: 298 S-NSEIGDLKEIIQIQKEGEDVKIAFNARYLIEGVKACDTKS-----IKMNLKSSLNPCL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +     +K       Y+ +P+R+
Sbjct: 352 IYPNE-----SKYEDEEFTYLALPVRL 373


>gi|312897427|ref|ZP_07756851.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis
           F0359]
 gi|310621488|gb|EFQ05024.1| DNA polymerase III, beta subunit [Megasphaera micronuciformis
           F0359]
          Length = 372

 Score =  252 bits (645), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 187/390 (47%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+ +++ D    L    ++   K N +     +L++A +  +EI+A+  ++ I   IP 
Sbjct: 1   MKLKIQKEDFTRALQSVQKVASNKSNNLSSENGLLIKAINDNIEIQANDYDMGIKTTIPG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G + +    L ++ R++     I    +++  ++++I  G   +   +    +F 
Sbjct: 61  IIEESGEVFLWDPHLSELTRRIASEEIILTKSDSD--SQMSIEGGKLKYRYMTMNTEDFN 118

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +  E  Y SF   S +LK+L++ T +A AT+  R    G F  ++ +   L  VATD 
Sbjct: 119 EVEVVEQGYASFTTDSVILKDLIDNTSYACATDTSRPVFTGTFLDVSGKS--LSMVATDT 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLS 236
           HRLA+  V +          I+P + + E+ R L + D  V V ++   + + +   ++ 
Sbjct: 177 HRLALKSVTLDQPSTGDIQAIIPGRLLSEVARQLPT-DVPVVVKITAVRNYLAIQFGNVY 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKL 295
           +  RLI+G FP+Y+ VIP      + +  ++   AV+R+SI++   +   +   ++ +++
Sbjct: 236 IRTRLIEGTFPDYKRVIPTEFSNIITIRRSDFTAAVERISIVAKDAQYNVINFDMADNQI 295

Query: 296 CMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            M   +PD G   +S+    +   P+ I FN +++L+++ + S DE+      F     N
Sbjct: 296 HMNSQDPDHGVVEDSVECIMSGGNPLSISFNGRFILDVLKHCSKDEI------FLKCREN 349

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S + I+ KD           N  +V+ PMR
Sbjct: 350 SPMLIQDKD---------TGNCVFVVTPMR 370


>gi|297564486|ref|YP_003683458.1| DNA polymerase III subunit beta [Meiothermus silvanus DSM 9946]
 gi|296848935|gb|ADH61950.1| DNA polymerase III, beta subunit [Meiothermus silvanus DSM 9946]
          Length = 366

 Score =  252 bits (644), Expect = 6e-65,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 177/388 (45%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  + E LG   R+I  +++ P+  ++ ++  +  L IK +  EI++   +PA 
Sbjct: 1   MEVRIPKRTLAEGLGILERVIPSRSSNPILTYLPIELGNKGLVIKGTNGEIDLEVHLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118
               G + V A   + IVR L  G  +    +N    G  + +S  +    L +     +
Sbjct: 61  TQGEGHVLVPAQPFFQIVRSLP-GELVEMVIKNVSSAGGGMELSSANFRTQLSTASPEGY 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P            L ++ L   + +  +A +TEE R    G+   ++ + L+  AVA+DG
Sbjct: 120 PELSFLSQSEE-RLPAAKLAQAITQVRYAASTEEYRAIFRGVQLELSPKGLR--AVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RL+    D+   +      ++P K+  EI+R+    +  V + + E  + L  E++ MS
Sbjct: 177 FRLSRY--DLPMHLVSSRKFVIPAKSADEIVRVFKDTEGEVSLGVGEGSLTLIGEAVRMS 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           V+L++GEFP+Y  VIP S   E  ++   LR+++ RV+++S      V L  + D+L M 
Sbjct: 235 VKLMEGEFPDYGRVIPQSFILEATLSAERLRESLKRVAVLSDRNNHRVDLLFAQDRLEMV 294

Query: 299 VDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +  D G+  E + +     P + + FN +YL++ +  I         V  +L    S  
Sbjct: 295 SEG-DYGQGREEIALEAVGEPQLMVAFNAQYLIDALSPIEG------TVRLKLSGPTSPS 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   +               V++P+R+
Sbjct: 348 VVESVEDP---------GYLAVVVPLRV 366


>gi|218297058|ref|ZP_03497735.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
 gi|218242613|gb|EED09150.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
          Length = 371

 Score =  252 bits (643), Expect = 9e-65,   Method: Composition-based stats.
 Identities = 92/396 (23%), Positives = 184/396 (46%), Gaps = 36/396 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ ++ + E +    R+I  +++ P+  ++ L A    L +  S  E+++   +PA 
Sbjct: 1   MRVTLPKNLLAERIALLERVIPSRSSNPLLTYLGLAAEKDALVLFGSNGEVDLEVRLPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ-----SFPE 115
           ++  G   + +   + +VR L          E  LG+E+ ++ G     L       +PE
Sbjct: 61  LEGEGRYLIPSQPFFQLVRSLPGE-----TVELSLGSELALASGRFTTRLALAPMEGYPE 115

Query: 116 SEFPSTKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
             FP  +  E  ++   +  +  L+  + +  +A + EE R    G+    ++   +  A
Sbjct: 116 LLFPDLEGGEGAFTQRAQFLAEELQRALSQVRYAASNEEYRAIFRGVQLEFSDRGFR--A 173

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI- 232
           VA+DG+RLA+   D+          +VP ++V E++R+L S +  V ++L    + L + 
Sbjct: 174 VASDGYRLAL--FDLERPQPFTRKAVVPARSVDELVRVLRSAEGEVVLALGPGTLGLAVR 231

Query: 233 ---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
               +L M+VRL++GEFP+Y+ VIP     +  ++    R+A+ RVS+++  +   V L 
Sbjct: 232 QEEGALRMAVRLMEGEFPDYERVIPKEFPLKAALDVEPFREALKRVSVLADKQNHRVDLF 291

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           L   ++ ++ +  D GK  E + V     PM + +N +YLLE +  +S            
Sbjct: 292 LEEGRVLLSAEG-DYGKGQEEIFVSLEGAPMSLAYNARYLLEALAPLSG------RAELG 344

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                S   +R  ++              V++P+R+
Sbjct: 345 FSGPTSPTLVRPLEE---------GGYQAVVVPLRV 371


>gi|325846374|ref|ZP_08169343.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
 gi|325481558|gb|EGC84598.1| DNA polymerase III, beta subunit [Anaerococcus hydrogenalis
           ACS-025-V-Sch4]
          Length = 370

 Score =  252 bits (643), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 176/387 (45%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++ D+   +  A + + RK  I +   +  +A +  L + +S  EI I   +  +
Sbjct: 1   MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDSLTLTSSDGEISILTKVSCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + ++A+++ +IVRKL D        +    +++ I    S F + +F   E   
Sbjct: 61  VIEEGEMAINANIISNIVRKLPDELIKIEVVD----SKIKIKCNGSKFNILAFDYYEKKD 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K    V   E+ +  LK  + +T FA + +E +  L GI F +   D  L  VA DG+R
Sbjct: 117 LK-VPDVDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFELM--DGYLNFVALDGYR 173

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +          +I+PRK++ E  RI+   +   K+   +  I       +M  
Sbjct: 174 VALKKLKLSYPSSMDKSRLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           ++ID  + +Y N+I   +   L V+   L  +++R  ++++  R   +K+++  DK  + 
Sbjct: 233 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDKCLIE 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E + +      + I FN +YL+E +    +       +   L SS +   
Sbjct: 293 S-NSEIGDLKEIIQIQKEGEDVKIAFNARYLIEGVKACDTKS-----IKMNLKSSLNPCL 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +     +K       Y+ +P+R+
Sbjct: 347 IYPNE-----SKYEDEEFTYLALPVRL 368


>gi|325969851|ref|YP_004246042.1| DNA polymerase III subunit beta [Spirochaeta sp. Buddy]
 gi|324025089|gb|ADY11848.1| DNA polymerase III, beta subunit [Spirochaeta sp. Buddy]
          Length = 368

 Score =  251 bits (642), Expect = 1e-64,   Method: Composition-based stats.
 Identities = 81/384 (21%), Positives = 176/384 (45%), Gaps = 19/384 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    +  IL  + ++     ++N++ ++ +V L+  +  L I+A+  ++  +  I   
Sbjct: 1   MKFVCSKEAILTEIIYSMDFTSQRNSLSITSNVYLETYNDTLIIRATDQKLGFSTHIAVQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G  TV    L +I+R L D   + F   + + T   +S  + +F L++    EFP 
Sbjct: 61  TLKEGKTTVFCEKLLNILRSLPD-TNVEFTVVDGMFTIKPVSQ-NIDFKLRTITPEEFPP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +       F +      ++  +T FA++ +E RY+L G++   N     +  VATDG R
Sbjct: 119 LETAPEGRYFSVPQKAFSDMANQTMFAISEDETRYFLCGLYLERNASG--MNMVATDGRR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L++ E     ++     +I+  K   E+ + LS+ + ++++ +++  +   I   +    
Sbjct: 177 LSIVERTFEEELPMFTPVIIAPKFFTELKK-LSTDEGTLELCITDQLLFAKIAQRTFYTT 235

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI G++PNY+ VIP S +    +   ++  A+ RVS++   + + + L +S   + +T D
Sbjct: 236 LIKGQYPNYRRVIPDSQNYSCTMRIQDMLDALKRVSLLVENKAKRIFLDISEAGVLLTSD 295

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             ++G+A E +   Y      +  NY YLL  +  +  +                ++ ++
Sbjct: 296 ESEVGEAKEIIPCQYEGPDSKVSLNYTYLLNPLKAMEGEYF-----SINFTEPTKAMTVK 350

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
            +         +  + ++++MPM+
Sbjct: 351 SE---------SNRDYYHIIMPMQ 365


>gi|146295087|ref|YP_001178858.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
 gi|145408663|gb|ABP65667.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           saccharolyticus DSM 8903]
          Length = 367

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 171/389 (43%), Gaps = 28/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++S + + +              V   VL++A D ++    +   +++     A 
Sbjct: 1   MRFVVDKSTLQDNISKVIPAAASTKVTSVLECVLIEAED-VVVFTTNDMRMQMQTEFQAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  V A LL DIV+KL  G      ++NE    V I      F L +    +FP 
Sbjct: 60  ILERGAALVKAKLLSDIVKKLPSGDIEIIREDNE----VKIRCQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +      E A++  ++ +++  FA + +E R    G+ F    + + L  V  DGHR
Sbjct: 116 MDRKPIDSFCEFAANEFEDAMDKVIFATSKDETRPTFTGVLFEREGDSVNL--VGMDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++    ++    S IVP + + +I +I+  ++   V+VS  E++    I S S+ V
Sbjct: 174 LAICKLK-PIEVDGEFSKIVPAENLDDITKIIDIEEAEKVRVSFFENQALFEIGSTSVIV 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296
            LI G F +Y+NVIP     ++ ++   L   ++R SI+S      +QAV   +S     
Sbjct: 233 TLISGRFFDYKNVIPTEYSTKISISADVLESTLERASIVSKDEKTNVQAVIFEVSGMMFR 292

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + D G+  E +        + I FN KY L+++  +         V   + S  S 
Sbjct: 293 VMSYSTD-GRYEEDVLCDVEGKDIRIGFNVKYFLDVLKVLDGG------VDIYITSLTSP 345

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++ +  +            Y+++P+++
Sbjct: 346 SVVKQQGDE---------GYIYLVLPVKM 365


>gi|169351631|ref|ZP_02868569.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552]
 gi|169291853|gb|EDS73986.1| hypothetical protein CLOSPI_02412 [Clostridium spiroforme DSM 1552]
          Length = 369

 Score =  250 bits (640), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 179/389 (46%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M   ++R  +L  L    + +  ++ +PV   +    +D  L +  S  +I I   I   
Sbjct: 1   MNFKIKRIKLLNALSKTTKAVSIRSPLPVLTGIKFDLHDDCLILTGSDSDITIQTKIIKD 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              ++   G + +++  + DIVRK+          +   G    IS   S F L      
Sbjct: 61  EDLTIYETGGVVLNSRYILDIVRKIDSEYINIQILD---GALTRISSPTSKFDLNGTDIL 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P     +     ++ S VLKN++ +T FA + +E +  L GI F      L+    AT
Sbjct: 118 DYPRIDLSKNGIKIDINSLVLKNIISQTKFAASDKEHKPILTGINFKATNNQLE--CTAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RLA   V +   +    +I +P+K++ EI +I+  KD  +++ +S+ ++    ++  
Sbjct: 176 DSYRLAKKVVSLNEDV--TFNITIPQKSLDEISKIIE-KDEIIEMYVSDRKVLYVFDNNI 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLIDG FP+   +IP S D EL ++   L  A+DRVS++++ +   +KL +  +++ 
Sbjct: 233 IQTRLIDGSFPDTNRLIPNSFDYELNIDTHYLLNAIDRVSLLTNEQNNIIKLDMDDNQVL 292

Query: 297 MTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++    ++G   E ++  +Y   P+ I F+ KY+ E I   +S +     +         
Sbjct: 293 LSSYMQEIGSVEEILDKAFYKGEPLSISFSSKYVNEAIRAFNSSK-----IRILFTGEMK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              I+  + +         +   +++P+R
Sbjct: 348 PFIIKDYENE---------DVIQLVLPVR 367


>gi|303236008|ref|ZP_07322611.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN]
 gi|302483881|gb|EFL46873.1| DNA polymerase III, beta subunit [Prevotella disiens FB035-09AN]
          Length = 374

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 174/385 (45%), Gaps = 17/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T+  + +   L    R+I  K+++P+    +  A++  L I AS  E+ +  ++   
Sbjct: 1   MRFTISSTALSSRLLSLSRVINSKSSLPILNCFVFDASNNQLAITASDSEVVVRMSLNLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GS  V+   + D V++L +         +E    ++  +G  NF + +  E   P
Sbjct: 61  TLDGNGSFAVNNQNILDAVKELPEQPLTVDVNMDEHMIYISYQNGSYNFPIVNSDEFPIP 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            +   +   S  ++S +L + + R+ FA A +E+   +NGI+F +  E   L  VATDGH
Sbjct: 121 QSLS-DDATSILISSDILVDNITRSLFATAQDELHPVMNGIYFDLTAES--LAVVATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +L V             S I+P+K    +   ++     V V              ++  
Sbjct: 178 KL-VRNRIFALSSNVPASFILPKKPAALLKSFVAKGGGDVVVRFDSRSAEFTFADGNLIC 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLIDG++P Y +VIP +N  ++ ++  +L  A+ RV   +S   Q ++  +++ +L +  
Sbjct: 237 RLIDGKYPKYNSVIPENNPYQITIDRKSLIGAIRRVLPFASDSSQLIRFHIANGQLDLNA 296

Query: 300 DNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++ D    A ESM   Y   PM I F    +LEI+ N+ S     +EV  +L   + +  
Sbjct: 297 EDIDFSTSAKESMTCSYEGNPMSIGFKGSSMLEILGNLQS-----EEVNIQLADPSRAGL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   ++          N   ++MP+
Sbjct: 352 VVPVEQP------EGENVLMLVMPV 370


>gi|15671984|ref|NP_266158.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281490500|ref|YP_003352480.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis
           KF147]
 gi|18202807|sp|Q9CJJ1|DPO3B_LACLA RecName: Full=DNA polymerase III subunit beta
 gi|12722837|gb|AAK04100.1|AE006239_2 DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis
           Il1403]
 gi|281374318|gb|ADA63851.1| DNA polymerase III, beta chain [Lactococcus lactis subsp. lactis
           KF147]
 gi|326405599|gb|ADZ62670.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. lactis
           CV56]
          Length = 380

 Score =  250 bits (639), Expect = 2e-64,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 174/394 (44%), Gaps = 29/394 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ ++     L    + I  K TIP    + ++  +  + +  S  +I I   +P   
Sbjct: 3   KFSINKNAFQNALRITKQAIGSKVTIPALTKLKIEVEENGITLIGSNGQISIKNFLPVDN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GS+ + A    ++V +L +   ++     +   +V ++ G S   L+   
Sbjct: 63  KDASMLISGTGSVLLEAAFFENVVSQLPE---VTLEFTEKEQKQVLLTSGKSEITLKGLD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E     S ++   VLK +   T FA++T+E R    G+         +L AV
Sbjct: 120 SEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLE-TLSTGELKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +         +I+P K++     + ++ +  +++ +S S++    E+
Sbjct: 179 ATDSHRMSQRLLPLE-DSELKFDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFRNET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291
           +S   RLI+G +P+   +IP   D    L  +   LR  +DR  +++ +     VKL++S
Sbjct: 238 ISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVS 297

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D +  T ++P++G   E +         + I FN +YL++ +  I +      EV  R 
Sbjct: 298 GDSVVTTANSPEVGSVHEELTALSKEGNDLAISFNPEYLIDALKVIKA-----PEVRIRF 352

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     ++ ++++S            ++ P+R
Sbjct: 353 ISNVRPFTLQPRNEES--------GFVQLITPVR 378


>gi|258510497|ref|YP_003183931.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477223|gb|ACV57542.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 370

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 87/349 (24%), Positives = 160/349 (45%), Gaps = 8/349 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +   L    RI + +    V   VL++A  G + + A   ++ +   + AS
Sbjct: 1   MRCLIEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGQVTLSAYDYDVALRMTVEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + + A L  ++VR+L  G  +            +I  G ++  L  F   EFP 
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGT-VDVATIAPHHLSASIDVGTTHAELHGFDPEEFPE 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179
             + + +   EL++  L   VE   +A A E   R  L G++  +  E  KL  +ATDG 
Sbjct: 120 LPDMKGIAPVELSAKTLVEAVESVGYAAAKENAARPILEGVY--VGYEGGKLIWMATDGL 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
           RLA     +  +++      +PR+A+ E+ R+L    D+ ++V  S S +    +++ + 
Sbjct: 178 RLARVSQTVEREMS--IRCTIPRRALTELTRLLDADHDAPLQVYQSASYVMFAWDNVQLF 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL  GE+P+   V+P       RV    L +A++RV+I++      V L +    L +T
Sbjct: 236 GRLYQGEYPDTSRVMPREFAAVCRVERRRLEEAIERVTILAENERHTVLLYVKDGVLELT 295

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
             + + G A E +  V +    + I  N +Y+L+ +    S + +  +V
Sbjct: 296 SRSAERGHAREEVPLVEFKGEEVKISLNARYVLDTMSAAESSKTMQMQV 344


>gi|224367125|ref|YP_002601288.1| DnaN [Desulfobacterium autotrophicum HRM2]
 gi|223689841|gb|ACN13124.1| DnaN [Desulfobacterium autotrophicum HRM2]
          Length = 371

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 86/370 (23%), Positives = 184/370 (49%), Gaps = 13/370 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK + +R  + E+L     I  +K  + ++  VL++ +   + I A+  E    G   A 
Sbjct: 1   MKFSADRKSLSEVLAQVQGICGKKTNLAITSDVLIKVSGSEVIITANDLETVFQGRYEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G I ++A  LY+I+R+  D        EN     V I   +  +++ S     FP 
Sbjct: 61  IESDGIIAINAKKLYEIIREYPDAQVPLNEIENR---WVEIGKDNIQYHIVSSDYENFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFH--INEEDLKLCAVATD 177
           T   E +   E+ S+  K +VE +     + +E R Y+ G  F    +E   +L  V+TD
Sbjct: 118 TPLIEDIPFVEIDSAAFKKMVEVSAMIAGSADEKRTYVLGALFEKITDETGERLRMVSTD 177

Query: 178 GHRLAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
             RL   +     + +    ++I+P+K + E+ R L  ++ SV + + +  + +  ++ +
Sbjct: 178 SRRLNSFDASYEGELVLPDENVIIPKKGLSELGRFL-DREGSVNIGIKDDHLIVQKQNET 236

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           + ++L++G++P+Y+ V+      ++ ++ + L   + R+SI+SS   ++V  + + ++L 
Sbjct: 237 LMIKLLEGDYPDYRRVLNTDQMTQIEMSRSMLLMVMKRMSILSSEDYKSVMFNFNENELV 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T+ NP++G++ E + + Y     +  FN +Y ++ +++I+S     D V+  +  +   
Sbjct: 297 VTITNPEIGESKEKITMGYGGEAFESAFNPRYFIDALNSINS-----DTVILNVKGAKHP 351

Query: 357 VFIRGKDKDS 366
             I+G D D 
Sbjct: 352 CIIKGLDDDQ 361


>gi|257065522|ref|YP_003151778.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548]
 gi|256797402|gb|ACV28057.1| DNA polymerase III, beta subunit [Anaerococcus prevotii DSM 20548]
          Length = 370

 Score =  250 bits (639), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 88/387 (22%), Positives = 185/387 (47%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + + D++  +  A + + +   I +   +  + +   L ++A   EI I   + A 
Sbjct: 1   MKFKINQQDLMNAITIAMKAVSKSTNIQIHELIYFECSASSLSLRAFDGEISIKTKVDAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G + V A L+ +IVRKL +   I          +++I    S+F L +F   +   
Sbjct: 61  VDEEGEMAVKASLISNIVRKLPNDIVII----ENKNGKISIKCSSSSFNLIAFDYYDKND 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     E+A+ +LK  + +T FA + +E +  L GI F + E  + +  VA DG+R
Sbjct: 117 I-NIPETKPIEIANDILKRSIGQTEFATSLDETKLALTGILFELKEGYVNM--VALDGYR 173

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +++ ++ +      +    I+P++++ E  RI+S  D + K+  +E+ +     S +M  
Sbjct: 174 VSLKKIKLDYPTDYEDSEYIIPKRSLLEWSRIVSD-DLTTKLYKNENDLIFTSGSTTMQC 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
           ++ID  F +Y+N+I   ++  + ++  +L  ++DR  ++S   R   +K+ LS + + + 
Sbjct: 233 KVIDKNFIDYRNIINDISETSVILDKRDLINSLDRAQVLSDPGRANLIKIELSDNVMLIK 292

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E+++V      ++I FN +Y+ E +    S +     +     SS +   
Sbjct: 293 S-NSEIGDVREAIDVEQKGNDLEIAFNARYMQEGVKACDSSK-----IKLNFKSSLNPCL 346

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I  +     N+     +  Y+++P+R+
Sbjct: 347 IYPE-----NSSYEDEDFTYLVLPVRL 368


>gi|225016759|ref|ZP_03705951.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum
           DSM 5476]
 gi|224950427|gb|EEG31636.1| hypothetical protein CLOSTMETH_00671 [Clostridium methylpentosum
           DSM 5476]
          Length = 340

 Score =  250 bits (638), Expect = 3e-64,   Method: Composition-based stats.
 Identities = 84/357 (23%), Positives = 170/357 (47%), Gaps = 24/357 (6%)

Query: 31  CHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF 90
             +LL+  +  L++     ++ IT  I       G+I ++A L  DI+RK+ D  QI+  
Sbjct: 2   EGILLECENNNLKLTGYDLDLGITKTIQVETVEPGAIVLNARLFSDILRKMPD-EQITIT 60

Query: 91  KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
            + +L T   I   D+ F +      E+P     +    F     +LKN++ +T FA++ 
Sbjct: 61  SDQKLLTR--IEGIDTEFNILGMSRDEYPDMPAVDDSQGFTAPDYLLKNMINQTLFAISV 118

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210
            +    L G  F +     K+  V+ DG+R+A+ + +I +      S +VP K + EI +
Sbjct: 119 NDQTPVLTGSLFDL--NSGKMSVVSVDGYRVALRKENIASDTD--VSFVVPGKTLAEITK 174

Query: 211 ILSSKDS-SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           +LS ++    +VS+    I   I   ++  RL++GE+ +Y++ IP  +   +  +   + 
Sbjct: 175 LLSDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTTRIVADTRTVV 234

Query: 270 QAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
           Q+++R SI+ + R +  VKL      + +T ++  +GK  +         P+ I FN KY
Sbjct: 235 QSIERTSIIINDRNKSPVKLVTEGSTINLTCEST-IGKVSDRFEATVEGDPIRIAFNNKY 293

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +++ + +   D++  D     ++   S + I   + D         +  ++++P+R+
Sbjct: 294 MIDALKHTECDQIYID-----INGPLSPIKIIPTEGD---------DFLFLVLPVRL 336



 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 24/183 (13%), Positives = 49/183 (26%), Gaps = 5/183 (2%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69
           +  ++      I   +  PV    L   N G + + +             + D   S  V
Sbjct: 105 LKNMINQTLFAISVNDQTPVLTGSLFDLNSGKMSVVSVDGYRVALRKENIASDTDVSFVV 164

Query: 70  SAHLLYDIVRKLQDGAQ-ISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
               L +I + L D  + ++            I+       L      ++ S   E +  
Sbjct: 165 PGKTLAEITKLLSDQEEAMTRVSVGSRHIIFEINGYTVISRLLEGEYLDYKSAIPEGHTT 224

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
                +  +   +ERT   +           +        + L   +T G      E  +
Sbjct: 225 RIVADTRTVVQSIERTSIIINDRNKSP----VKLVTEGSTINLTCESTIGKVSDRFEATV 280

Query: 189 VAQ 191
              
Sbjct: 281 EGD 283


>gi|290968153|ref|ZP_06559698.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str.
           28L]
 gi|290781828|gb|EFD94411.1| DNA polymerase III, beta subunit [Megasphaera genomosp. type_1 str.
           28L]
          Length = 371

 Score =  250 bits (638), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 181/388 (46%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERK-NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+T+ + D+ + L    +I + K N +  S   LL+A   ++EI+A+  E+ I   +P 
Sbjct: 1   MKLTLTKEDLNKGLQTIAKIAQSKTNNLQSSNGFLLKALHNVIEIQANDYEMGIKTIVPG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G   ++   L +++ KL   +     K+ +  T++ I  G   F   +   S+F 
Sbjct: 61  IIEEPGETFIANPYLIELIHKLPSDSVQLCKKDTD--TKLLIIGGSVKFECATMNISDFN 118

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +  E  Y+ F   S +LK+L++ T FA +T   R    G    + +   ++  VATD 
Sbjct: 119 EVEIVESGYAQFTTNSIILKDLIDHTSFACSTNTERPIFMGTHLDVEKN--RINMVATDT 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSM 237
           HRLA+        I     + +P + + EI R L       V ++   + + +   ++ +
Sbjct: 177 HRLALKTYMSETPITTPIKVTIPSRLLMEISRNLPIDIPEPVTITAVRNYLAIRFSNVYI 236

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLC 296
             RLI+GE+P Y+ VIP      +  +      AV+RVS++  + +   +K S S +++ 
Sbjct: 237 KTRLIEGEYPKYERVIPKDFQCTVTTDRAAFTSAVERVSLVVQNPQYNLIKFSFSQNQIK 296

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   +PD G   + +        + I FN KY+L+++ +   ++++   +  R   + S 
Sbjct: 297 LMSRHPDYGVVEDLVACDMTGEDLTISFNSKYILDLLKHCHEEKII---INLR---TQSP 350

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V I+ KD  S           +V+ PMR
Sbjct: 351 VLIKDKDDSS---------CVFVVTPMR 369


>gi|11320915|gb|AAG33953.1|AF197893_1 DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 368

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 101/383 (26%), Positives = 195/383 (50%), Gaps = 21/383 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  ++    ++ L    R I +  + P+  ++L+   +G+L + A+  EIE+   I   
Sbjct: 1   MKFNIKNKIFIQNLQKINRFITKNTSFPILENILISIKNGILSLTATNLEIELISNIKLL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              + GS TVS   L DI R     + I          +++I    S++ L + P   FP
Sbjct: 61  QEHISGSTTVSGRKLLDICRHSLHSSDIQIEL---KKNKMHIISDKSHYVLTTLPADNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      +    + S +LK ++E+T F+M  +++RYYLNG+     + D  L  VATDG+
Sbjct: 118 NNDNFNRISKIFIHSHILKEMIEKTQFSMGKQDVRYYLNGMLLE--KIDHSLNMVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RLA+A+  +   +I +   I++ R+ + E+ ++L+     +K+ + ++ I + IE    +
Sbjct: 176 RLAIAKTIMQEIKIIQDFKIVITRQGIIELYKLLNISTKLIKILIGKNHIRIYIEQFIFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY+++        +  NC  L+Q++ R SI+S  +   V++ + + +  + 
Sbjct: 236 AQLIEGKFPNYESIFLIKKRNGIMFNCQLLKQSLLRASILSHEKFCGVEIHIKNGQFKVL 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            DN +   A +  N+ Y    ++I  N  Y+L+I++ ISS     + ++F L+ S++S+ 
Sbjct: 296 SDNQEEEIAEDMFNINYIGPEIEISINVYYILDILNAISS-----ENILFFLNHSHNSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLM 381
           I  +         N  +  YV+M
Sbjct: 351 IEAE---------NDASTIYVVM 364


>gi|193214558|ref|YP_001995757.1| DNA polymerase III subunit beta [Chloroherpeton thalassium ATCC
           35110]
 gi|193088035|gb|ACF13310.1| DNA polymerase III, beta subunit [Chloroherpeton thalassium ATCC
           35110]
          Length = 377

 Score =  249 bits (637), Expect = 4e-64,   Method: Composition-based stats.
 Identities = 93/390 (23%), Positives = 181/390 (46%), Gaps = 20/390 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +     + E + +    +  K T      + L+     L + A+  +I +T      
Sbjct: 1   MKFSSSIKHLSEAVNNTVLALPAKATDARYESINLKLEQNKLSLFATDGDISLTLQTNVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN--ISHGDSNFYLQSFPESEF 118
               G+ +++A    D++R + D        E E   +++  I     ++ + +    E 
Sbjct: 61  SSDSGAASLNAKKFQDVLRNMYDAIAEFSVTEKESAEQLSFLIKTDRGSYVISAQAGFEE 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S    ++  +F ++   L  L+++T FA +T+ +R  + G+ F I  E ++  AV+TDG
Sbjct: 121 ESAGSLQFDLNFPISREHLAGLIDKTIFAASTDGMRPAMMGVLFEIEAETIR--AVSTDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLS 236
           HRL     +          IIVP + +G + ++  S+D  V++S+  +  RI   +    
Sbjct: 179 HRLVKITRNHNTGAEGKLKIIVPSRVLGIVRKLF-SEDGDVEISIDANSQRIRFRMGETI 237

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +   L+   +PNY+ VIP  NDK + +N +NL  +V RV   SS     V+  +  + L 
Sbjct: 238 LLCSLVSENYPNYEAVIPLENDKTMLLNRSNLLGSVKRVGRFSS--RGDVRFHVQENSLA 295

Query: 297 MTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++ +N D G  A ES+   Y +  + I FN K++ + + ++++     +EV+F+  S   
Sbjct: 296 VSAENADEGASADESVPCEYKDEAILIGFNSKFIEDALQHLNA-----EEVIFQFSSPTR 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  I  K ++     D   +   ++MP+RI
Sbjct: 351 AAIILPKQEE-----DANEDVLMLVMPVRI 375


>gi|307320162|ref|ZP_07599582.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
 gi|306894208|gb|EFN24974.1| DNA polymerase III, beta subunit [Sinorhizobium meliloti AK83]
          Length = 372

 Score =  249 bits (637), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 99/389 (25%), Positives = 180/389 (46%), Gaps = 24/389 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              +++     L      +  KNTIP   ++ ++ +   + ++A+  +IEI     A + 
Sbjct: 2   FKTKKAAFQAALSSVKDAVNSKNTIPHLANIAVERHAEGIRLRATNLDIEIAAPFQAEIG 61

Query: 63  VCGS-ITVSAHLLYDIVRKLQDGAQISFFKE--NELGTEVNISHGDSNFYLQSFPESEFP 119
              S  T  A  +  IV  + DG  ISF           V I  G S   +   P ++FP
Sbjct: 62  ADFSGFTFPAKTVTSIVGAVDDGKDISFEAVMLGNKLEAVTIRSGRSRIKVPILPLADFP 121

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E  ++  L SS     +    +A +TEE R+YLNG+F   +E    L  VATDGH
Sbjct: 122 ILDQGELPFAVSLGSSSFIRCLSAVDYACSTEETRHYLNGVFLDASEAG--LMFVATDGH 179

Query: 180 RLAVAEV---DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           R+A   +   D+   I  MP +I+PR+    +++ L  KD ++ +SLSE RI     ++ 
Sbjct: 180 RMARRLLPSSDVDDPIESMPKVILPRETAPLLVKHLP-KDETLSISLSEFRIRFAAGNIV 238

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +L++G +P+Y+ + P S+    R++   L+ A+ RV  +++ +  AV+ +       
Sbjct: 239 IISKLVEGTYPDYRRLSPGSHKIRARISGAELKAAIARVLTVNTEKGNAVRFTFDKTSAT 298

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +T    D G+A + +    +     +  N  YL E ID++ +     +E+    +   S 
Sbjct: 299 LTSRPGDAGEAEDVVTAASDGE-FVVGMNGAYLRETIDHLDT-----EEIELDFNDPASP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +R         K  + +   ++MPMR+
Sbjct: 353 ILLR---------KPGETDTHTIIMPMRV 372


>gi|125622884|ref|YP_001031367.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|3913511|sp|O54376|DPO3B_LACLM RecName: Full=DNA polymerase III subunit beta
 gi|2909714|gb|AAC12964.1| polymerase III subunit DnaN [Lactococcus lactis subsp. cremoris
           MG1363]
 gi|124491692|emb|CAL96610.1| beta subunit of DNA polymerase III [Lactococcus lactis subsp.
           cremoris MG1363]
 gi|300069622|gb|ADJ59022.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris
           NZ9000]
          Length = 380

 Score =  249 bits (636), Expect = 5e-64,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 29/394 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ ++     L    + I  K TIP    + ++  +  + +  S  +I I   +PA  
Sbjct: 3   KFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GS+ + A    ++V +L +   ++     +   +V ++ G S   L+   
Sbjct: 63  KDASMLISGTGSVLLEAAFFENVVSQLPE---VTLEFIEKEQKQVLLTSGKSEITLKGLD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E     S ++   VLK +   T FA++T+E R    G+         +L AV
Sbjct: 120 SEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLE-TLSTGELKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +     K   +I+P K++     + ++ +  +++ +S S++    E+
Sbjct: 179 ATDSHRMSQRLLPLEDTDLK-FDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291
           +S   RLI+G +P+   +IP   D    L  +   LR  +DR  +++ +     VKL++S
Sbjct: 238 ISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTVMTTNGTVKLTVS 297

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D +  T ++P++G   E +         + I FN +YL++ +  I +      EV  R 
Sbjct: 298 GDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKA-----PEVRIRF 352

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     ++ ++++S            ++ P+R
Sbjct: 353 ISNVRPFTLQPRNEES--------GFVQLITPVR 378


>gi|261879423|ref|ZP_06005850.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis
           DSM 17361]
 gi|270333991|gb|EFA44777.1| DNA-directed DNA polymerase III beta subunit [Prevotella bergensis
           DSM 17361]
          Length = 374

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 89/365 (24%), Positives = 172/365 (47%), Gaps = 13/365 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  + +   L    ++I  KN++P+    L+Q ++G L I AS  E  +  ++   
Sbjct: 1   MRFTLSSTALNSRLQTLSKVINNKNSLPILESFLMQVHNGQLTITASDNENMMQASLALD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           + D  G   + +H + D V++L +      F+ N    EV + + +  +   +    ++P
Sbjct: 61  NFDTDGVFAIPSHTILDAVKELPEQP--LTFEVNPDTYEVTVGYQNGQYQFAAQNADDYP 118

Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +     V+   + + +L N + RT FA    EIR  +NG++F +  +   L  VA+DG
Sbjct: 119 RNEPLSGDVHVITIDAEMLCNSLSRTLFATDNNEIRPVMNGVYFDLTPDC--LSFVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     S+I+P+K    +   L+ +   V +  ++    +      + 
Sbjct: 177 HKL-VRCRNYSIKSDIPASLIMPKKPATLLKNTLAKEHGDVVIKFNDQSAEVKYSEGLLI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G FPNY   IP  N  E+ ++   L  A+ RV   +S+  Q V+  L++  L ++
Sbjct: 236 CRLIEGVFPNYNAAIPTDNPNEVNIDRKVLLSAIRRVLPFASMSSQLVRFRLNTGSLEVS 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A E +   YN  PM I F   +L+EI++++ +     DE+  +L   + + 
Sbjct: 296 SEDLDFATRAKEELVCEYNGQPMQIGFRGDFLMEILNSLDT-----DEIKIQLGDPSRAG 350

Query: 358 FIRGK 362
            +   
Sbjct: 351 VVIPA 355


>gi|212551001|ref|YP_002309318.1| DNA polymerase III beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
 gi|212549239|dbj|BAG83907.1| DNA polymerase III beta subunit [Candidatus Azobacteroides
           pseudotrichonymphae genomovar. CFP2]
          Length = 374

 Score =  249 bits (636), Expect = 6e-64,   Method: Composition-based stats.
 Identities = 101/372 (27%), Positives = 176/372 (47%), Gaps = 13/372 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  +  + +L  L    ++I  KN IP+    L Q +D  L I  +  E  IT      
Sbjct: 1   MKFIIPGNVLLGYLQTVGKVIATKNIIPILDCFLFQLSDNQLTITGADAETRITTTSEVL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           + +  G   + +  L D +R+L D      F  NE   EV I + +  +   +    E+P
Sbjct: 61  NAEGEGKFAIPSKNLLDALRELPDQPIT--FVINETNNEVLIYYENGKYSFIAQNGDEYP 118

Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           ++K  +  V+   + +  L N +  T FA A +E+R  +N IFF ++ E  ++  VA+DG
Sbjct: 119 TSKPLQIEVHELIIKTKDLLNGISSTLFASAHDELRPVMNSIFFDMDPE--RVIFVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +      K  S I+PRK    +  IL  ++    ++   + IH+ +   ++ 
Sbjct: 177 HKL-VRLKNSRLSGNKSSSFILPRKPANLLRTILLREEGETVINFDLNYIHIILPHFTLI 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  VIP  +   + V+  N   A+ RV++ S+     +KL + ++K+ +T
Sbjct: 236 SRLIEGHYPNYNAVIPNESPYRIIVDRLNFLNALKRVTLFSNPGNSLIKLQILANKIFIT 295

Query: 299 VDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D   A E +    Y    + I F   YL+E+++NISS+     E++F L     + 
Sbjct: 296 AQDIDYSIAAEELVLCNYEGNEITIGFKGTYLIEMLNNISSN-----EIIFELADVTRAG 350

Query: 358 FIRGKDKDSKNN 369
            I  K+     +
Sbjct: 351 LILPKENKENED 362


>gi|167957209|ref|ZP_02544283.1| DNA polymerase III, beta subunit [candidate division TM7
           single-cell isolate TM7c]
          Length = 365

 Score =  249 bits (636), Expect = 7e-64,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 177/388 (45%), Gaps = 28/388 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+++ +  + + L     I   +N +P+  ++LL+ + G L +  +  EI  T  I A 
Sbjct: 1   MKVSITQEKLAKALNLIKDIASSRNELPILNNILLRTDGGRLLVAGTNLEIASTQYIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +D  GSIT+ A L+ + V  L  G      K       ++I+ G  +  +      E+P 
Sbjct: 61  IDKHGSITIPARLVSEFVSNLPSGTVELEAKNEH----LHITSGKFSSVINGVVADEYPE 116

Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               +   +   E+    LK  + +T  A++++  R  L G+++H +E  L L   ATDG
Sbjct: 117 LPTIDEKTAIQYEIDVEDLKKAIIQTKIAVSSDVTRAVLTGVYWHNHEGSLYL--AATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA   +   A+     S I+P   + E+ + +  ++  + V   ES++      + + 
Sbjct: 175 YRLAEKRL---AKSNDEVSAIIPASTLSEVSKSV-GEEKKITVLFDESQVCFRTGDMEIV 230

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LC 296
            RLIDG+FP+Y+ +IP S++ E+ +   +  +     ++ +      + ++ S +   L 
Sbjct: 231 SRLIDGKFPDYRQLIPSSSETEIVIKKADFSRVTKIAALFARESGGGITVTASKENSLLS 290

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     ++G+     +   +     +  N +YL E+++ I +     DE+ F  +   S 
Sbjct: 291 IHSIASELGENTSEASAEIS-ADGQVTLNSRYLTEVLNIIDA-----DEITFSFNGKLSP 344

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             IR + K          +  +++MP++
Sbjct: 345 CVIREQVK--------NPDYTHIIMPLK 364


>gi|150020433|ref|YP_001305787.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429]
 gi|149792954|gb|ABR30402.1| DNA polymerase III, beta subunit [Thermosipho melanesiensis BI429]
          Length = 366

 Score =  248 bits (635), Expect = 8e-64,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 181/385 (47%), Gaps = 26/385 (6%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SV 61
             + +S++ + +  A   +  K   P+   +L    +   +I A+  +  +   +    +
Sbjct: 4   FLINKSELEKKISVAANAVGSKTVDPILQCLLFSLENET-QIYATDMQTFVISKLNVYEI 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE-FPS 120
           +  G   V A LL +IV+ + D  QI F  +     ++ +  G S+F L +  E + FP 
Sbjct: 63  NGNGKFAVDAKLLEEIVKNV-DTEQILFSYD---MGKLVLKSGKSSFNLSTHSEPDKFPQ 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            + EE    FEL +S+L  +++R  F  +TE     LNG+++      L+L  VA+DG+R
Sbjct: 119 IELEESGIKFELETSILSEMIDRVLFCASTESAMRALNGVYWEAKGGYLRL--VASDGYR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSV 239
           LA+ E  +   I      I+  K++ E+  ++   D  +  V     ++ ++   +++ +
Sbjct: 177 LALTEQKV--NIDADFDFILSLKSMKELDNLIKQTDEPILTVKFDHKKVWISAGDITVIM 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           R+++  FP+Y+ V+P      +  N     +A+ R+ I+S    + V+L ++ + L +  
Sbjct: 235 RIVEEVFPDYKRVLPKVFKTRIIFNKEEFLEALKRIMIISKRGDEKVRLQINDNILVLNS 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +P+ G+  E +++      + I FN K+L E +  I      +DEVVF      S + I
Sbjct: 295 QSPEYGEVNEEISIEQEGEDLSINFNPKFLNEAVKKIE-----EDEVVFNFVDDLSPMQI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
             KD +            Y+++P+R
Sbjct: 350 NSKDVNE---------YLYIVLPVR 365


>gi|331004665|ref|ZP_08328127.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
 gi|330409592|gb|EGG89032.1| DNA polymerase III [Lachnospiraceae oral taxon 107 str. F0167]
          Length = 369

 Score =  248 bits (635), Expect = 9e-64,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 169/385 (43%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +  +++ ++  LG   + +  K +  +   +L+ A D  + + A+  E+ I   +   
Sbjct: 1   MNLKFQKAQLVNALGIVMKAVSTKTSSVILESILITAKDNRVFLDATDTELSIQTEVDGI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + ++A L  DIVRK  +        + +   +  I    + F +      EF  
Sbjct: 61  IVNPGGVVLNAKLFSDIVRKF-ENTDSLIELDVDKEFKSTIRCEQAVFNIMGIDPVEFIP 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             + +     +L+   LK ++ +T F+ A  +I   + G    + +   K   V  DGHR
Sbjct: 120 MPQIDKDDFIKLSQFSLKEVIRQTEFSTAISDINRMMGGELIDVKDNIAKF--VTLDGHR 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESLSMSV 239
           +++  +++          +VP K++ E++RI+ S     V +  S+  I    +   +  
Sbjct: 178 MSIRNIELNGDFENQR-CVVPIKSLQEVMRIIDSDTQKDVSIYFSKDHILFEFDKTLVLS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMT 298
           R++DGE+   + ++    D ++ V+   L+ A+++  I+        + + + S  L ++
Sbjct: 237 RILDGEYFRIETMLSNDYDTKVTVSRNRLQSAIEQAMILIRENEHKPLIMEIESSLLTLS 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++  +G     +N+  +   + I FN K+L++ +  I      DD V     ++ S  F
Sbjct: 297 VNSS-LGFMDAKVNIEKSGNDLKIAFNPKFLVDALKVID-----DDFVNIYFTNAKSPCF 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           IR          D+K    Y+++P+
Sbjct: 351 IR----------DDKNTYTYLILPV 365


>gi|167755164|ref|ZP_02427291.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402]
 gi|237733413|ref|ZP_04563894.1| DNA polymerase III subunit beta [Mollicutes bacterium D7]
 gi|167705214|gb|EDS19793.1| hypothetical protein CLORAM_00669 [Clostridium ramosum DSM 1402]
 gi|229383448|gb|EEO33539.1| DNA polymerase III subunit beta [Coprobacillus sp. D7]
          Length = 369

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 89/389 (22%), Positives = 179/389 (46%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M   ++R  +L  L  A + +  ++ +PV   +     D  L +  S  +I I   I   
Sbjct: 1   MNFKIKRLKLLNALAKATKAVSIRSPLPVLTGIKFDLQDDCLILTGSDSDITIQTKIEKD 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              ++   G + +++  + DIVRK+          +   G    IS   S F L      
Sbjct: 61  EDLTIYQTGGVVLNSRYILDIVRKIDSDEIKIEILD---GALTRISGATSKFDLNGTDVL 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P     +      L +  LK+++ +T FA + +E +  L GI F     + +L   AT
Sbjct: 118 DYPRIDLSKTGTKVLLNALSLKDIISQTKFAASDKEHKPILTGINF--KAGNRQLECTAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RLA   V +   +    +I +P+K++ EI +I+  +D  +++ +S+ ++    ++  
Sbjct: 176 DSYRLAKKIVSLDEDV--TFNITIPQKSLDEISKIIE-RDEMIEMYVSDRKVLYVFDNNI 232

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  RLIDG FP+   +IP + D EL ++   L  A+DRVS++++ +   +KL +S +K+ 
Sbjct: 233 IQTRLIDGTFPDTNRLIPDAFDYELDLDAHYLLNAIDRVSLLTNEQNNIIKLDMSDEKVV 292

Query: 297 MTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++    ++G   E ++  +Y   P+ I F+ KY  + I   +     + ++         
Sbjct: 293 LSSYMQEIGSVEEILDKSFYKGTPISISFSSKYATDAIRAFN-----EPKIKILFTGEMK 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              I+  +KD         +   +++P+R
Sbjct: 348 PFIIKDFEKD---------DVIQLVLPVR 367


>gi|325108904|ref|YP_004269972.1| DNA polymerase III subunit beta [Planctomyces brasiliensis DSM
           5305]
 gi|324969172|gb|ADY59950.1| DNA polymerase III, beta subunit [Planctomyces brasiliensis DSM
           5305]
          Length = 369

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 75/386 (19%), Positives = 156/386 (40%), Gaps = 24/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M++  ++  +   L     ++  +    +  +  L   +G+  +  +  EI +   IP  
Sbjct: 1   MELKFKKEILAGALQVVGGVVPSRTPKDILKNTKLVIENGVATLMGTDTEIGMRYQIPEV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G + +    L  I+R++          ++     + ++ G S F L      EFP
Sbjct: 61  ETGSSGEVLLPTQRLVSILREVVSPDITLQVSDDL----LEVTAGQSEFRLPVEDPREFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                     F +    LK  ++R  FA   E  RY L G+F  ++     L   ATD  
Sbjct: 117 DVAPFNAETYFRVPGHALKQAIKRVIFAADDESTRYALGGVFMELSANGAVL--AATDSR 174

Query: 180 RLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RLAV E+   A+  +++  + ++PRKA+  + R +   DS + ++  +        S  +
Sbjct: 175 RLAVVEIPATAEGDVSETITAVIPRKAMTLLERSIDGDDSEILIAPGDHDAVFRSGSCMI 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RL++G FPN+++V+P ++   + +        V +  I++S   + V        + +
Sbjct: 235 YTRLVEGRFPNFRDVVPSNSTVTIDMVAGPFHNLVRQSQIVTSDESRGVDFVFREGSVLL 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
                D+G++   M + Y+   + I F+ +++ E +  + ++      V   L       
Sbjct: 295 KSRAADVGESKVEMPIDYSGDELAIMFDPRFVSEFLRVLDAET----TVNLGLTGGEDPA 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
             R  +           +  YV+MP+
Sbjct: 351 VFRSGE-----------DYRYVIMPL 365


>gi|225620184|ref|YP_002721441.1| DNA polymerase III subunit beta [Brachyspira hyodysenteriae WA1]
 gi|225215003|gb|ACN83737.1| DNA polymerase III beta (beta clamp) subunit [Brachyspira
           hyodysenteriae WA1]
          Length = 375

 Score =  248 bits (634), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 94/389 (24%), Positives = 186/389 (47%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    + DI++ +G    ++E K    +  +VL   +  +L + A+   +     I   
Sbjct: 1   MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLSGNMLTLTATDGSVWARSRIILD 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G++ V A  +  I++++ DG      +ENE    +   +G +   +      +FP
Sbjct: 61  DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKIN-IESENGKTKHLIIGMKTDDFP 119

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  E +   S   L +  L  ++ +T  ++A E  +  L GI F   + D K  AVATDG
Sbjct: 120 AYPESDGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
            R+AV E +         SII+  K + EIL   +  +   VK+ +   +++  +     
Sbjct: 178 RRMAVIEREFEGVENGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQVGKYDF 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDKLC 296
              LI+G++PN++ VIP       RVN  +L  A+ R V +++ VR + + L++S + L 
Sbjct: 238 VSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLK 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +MG+++E +++ Y+     + +NY Y+ ++I  I S+      V F ++  +S 
Sbjct: 298 VKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEI-----VTFMVNKDSSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  +++         + +Y++MPM I
Sbjct: 353 TMVKEIERE---------DYYYIIMPMSI 372


>gi|288928330|ref|ZP_06422177.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317
           str. F0108]
 gi|288331164|gb|EFC69748.1| DNA polymerase III, beta subunit [Prevotella sp. oral taxon 317
           str. F0108]
          Length = 375

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 96/388 (24%), Positives = 181/388 (46%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK ++  S +   L +  + +  K +IP+  + L +  DG+L +  S  E  +  A+   
Sbjct: 1   MKFSISSSALSSKLQNLAKTLSAKPSIPILNNFLFEVVDGVLTLTTSDSETTMKAALKLD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  G  TV +  + D  R+L D           +  ++   +G  NF  Q+    E+P
Sbjct: 61  ESDSNGRFTVPSRTILDATRELPDQPLHFDINLETMAVQITYQNGVYNFTAQT--AEEYP 118

Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             KE      S ++ S+VL N + R+ FA   +E+R  +NGI+F + E+   L  VATDG
Sbjct: 119 RNKELAADAASIQMESAVLLNSIVRSIFATGQDELRPIMNGIYFDLKEDG--LAIVATDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L   + + +    K  S ++ +K    +  IL+   + V++   +    ++  +  +S
Sbjct: 177 HKLVKNKNNAIRSDVKR-SFVLAKKPASLLRNILTKDATMVEIKFDDRNAEVHFPNGMLS 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL++G +PNY++VIP  N  ++ ++   L   + RV   +S   Q ++L +    + ++
Sbjct: 236 CRLVEGNYPNYESVIPKDNPNQITLDRKGLVSVLRRVLPFASESSQLIRLHIEQGLIELS 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ESM   Y   PM+I F    L ++++N+ S     D+VV +L   + + 
Sbjct: 296 SEDIDFATSAKESMVCDYVGIPMNIGFKGSVLGDVLNNLDS-----DDVVVQLADPSKAA 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +          +        ++MPM +
Sbjct: 351 LVLPA------VQPENEEVLMLIMPMML 372


>gi|302870734|ref|YP_003839370.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis
           OB47]
 gi|302573593|gb|ADL41384.1| DNA polymerase III, beta subunit [Caldicellulosiruptor obsidiansis
           OB47]
          Length = 368

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 87/388 (22%), Positives = 172/388 (44%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++  + + +              +   VL++A D  +    +  ++++     A 
Sbjct: 1   MRFVVDKDILQDNISKVIFSAASTKVSSILECVLIEAEDS-IIFTTNDMKMQMQTEFKAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  V A L  DIV+KL DG      +ENE    V I      F L +    +FP 
Sbjct: 60  ILQRGAALVKAKLFSDIVKKLPDGDVEVIREENE----VKIRSQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +++      E  +S  ++ +++  FA + +E R    G+ F   EED  +  V  DGHR
Sbjct: 116 MEKKPSESFCEFVASEFEDAIDKVIFATSKDETRPTFTGVLFE-REEDEFVNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++    ++    S IVP   + +I +I+  ++   V+VS  E++    I S ++ V
Sbjct: 175 LAICKIK-PVEVDGNFSKIVPADNLDDITKIIDIEEAEKVRVSFYENQATFEIGSTTVIV 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
            LI G+F +Y++ IP     ++ ++   L   ++R SI+S   +     +   ++ +  T
Sbjct: 234 TLISGKFFDYKSAIPTEYSTKISISADVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293

Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           V +    G+  E +        + I FN KY L+++  +        E+   + S  S  
Sbjct: 294 VRSMSADGRFEEDVLCSVEGKDIRIGFNVKYFLDVLKVLDG------EINLFITSQTSPS 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++  D +         N  Y+++P+++
Sbjct: 348 IVQKPDDE---------NYIYLVLPIKM 366


>gi|283768636|ref|ZP_06341548.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219]
 gi|283105028|gb|EFC06400.1| DNA polymerase III, beta subunit [Bulleidia extructa W1219]
          Length = 373

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 177/391 (45%), Gaps = 28/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK +++++  +  L      +   +  P    + ++     L + +S  +I I   I   
Sbjct: 1   MKFSIKKNPFVTALSELSHAVSTNSPQPSLRGIKIEVKVDSLVLTSSDADISIQKKIISD 60

Query: 58  ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                +V   G + + A  L +IVRKL        F E+  GT        + F +    
Sbjct: 61  EENDLNVQEEGHLLIEAKYLLEIVRKLDSD---HIFVESIDGTYTQFKGHQALFKINGMA 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P+    +     EL  +   +L+E+T FA + +E++  L G+ F +     +L   
Sbjct: 118 VHQYPAIDFNKPTIEIELDKNTFLDLIEQTVFACSKQEMKPVLTGVNFELKNN--QLVCT 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR-ILSSKDSSVKVSLSESRIHLNIE 233
           ATD +RLA   VD+ +Q     +I +P K++ ++   IL +   SV  S+  S+I + I+
Sbjct: 176 ATDSYRLARKVVDLDSQ--DQFNITIPAKSLNDMKTTILQNAKESVFFSVDRSKIQIRID 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           ++    R++DG++P    +IP     EL +N  +L +A+DR S + S  ++  +L L +D
Sbjct: 234 NMIFQSRILDGDYPATSQLIPTQFITELEMNRQDLLRAIDRTSFLRSEDVKENRLQLIND 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +  +T  + ++G++ E +   +    +DI F+  Y++E +  +  ++V+      +    
Sbjct: 294 QAILTSRSQEIGESHEELIAQHRGENLDISFDGSYVIEALRGLHGEKVL-----VQFKGM 348

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                +   D  S            +++P++
Sbjct: 349 MKPFILTSIDDPS---------TIQLVLPLK 370


>gi|319652160|ref|ZP_08006279.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
 gi|317396149|gb|EFV76868.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
          Length = 375

 Score =  248 bits (633), Expect = 1e-63,   Method: Composition-based stats.
 Identities = 85/395 (21%), Positives = 171/395 (43%), Gaps = 33/395 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  ++     + +G     I  K   P+   + L A +  L +  S  +I I   IPA 
Sbjct: 1   MEFKIKNEYFNKAVGEVSSAISAKTPFPILTGIKLTACENHLRLTGSNSDIVIEKVIPAA 60

Query: 60  ------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  +   GS+ V++  L ++++KL     I           V I   +   Y+  F
Sbjct: 61  DEGAELEIVKTGSVVVTSRYLTELIKKLPGDIHIKL----NEKHNVTIISDEIITYINGF 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  ++P   E +  +  +++S  L  ++++T FA +  + R  L G+   + E       
Sbjct: 117 PAEQYPKLPEFDNSHEIQISSVKLSAIIKQTVFAASKNDTRPVLTGVHMIVKEN--HFSC 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232
            ATD HRLA  +  I +  A   S IVP  ++ E+L++L+  ++S V++  SES +    
Sbjct: 175 AATDSHRLAFLQTSIAS--ASKGSFIVPGSSLKELLKLLAHQEESEVQIFSSESYLVFKT 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLS 291
           +S+ +  RLI+G++P+   +IP      ++++   L + +DR  + +   +   V L + 
Sbjct: 233 KSIMLCSRLIEGKYPDVTGLIPNEAKTVIKLDAKKLLKGIDRACLFALEWKNNNVLLEIK 292

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              L ++  +  +GK  E+   +       + I  +  +L++ +  I      ++ V+  
Sbjct: 293 EGALKISSVSSAIGKIEETQPLLEITGERELSISLDGNFLMDALKAIQ-----EEHVLLS 347

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              S   V I+    +S            ++ P+R
Sbjct: 348 FSGSMKPVIIKPVSGES---------YIQLVSPVR 373


>gi|116510845|ref|YP_808061.1| DNA polymerase III subunit beta [Lactococcus lactis subsp. cremoris
           SK11]
 gi|116106499|gb|ABJ71639.1| DNA polymerase III, beta subunit [Lactococcus lactis subsp.
           cremoris SK11]
          Length = 380

 Score =  247 bits (632), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 85/394 (21%), Positives = 176/394 (44%), Gaps = 29/394 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           K ++ ++     L    + I  K TIP    + ++  +  + +  S  +I I   +PA  
Sbjct: 3   KFSINKTAFQNALKITKQAIGSKVTIPALTKLKIEVEEKGITLIGSNGQISIKNFLPADN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GS+ + A    ++V +L +   ++     +   +V ++ G S   L+   
Sbjct: 63  KDASMLISGTGSVLLEAAFFENVVSQLPE---VTLDFIEKEQKQVLLTSGKSEITLKGLD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
              +P  +E     S ++   VLK +   T FA++T+E R    G+         +L AV
Sbjct: 120 SEIYPHLQEISEGSSLKMKVKVLKEIFTETVFAVSTQENRPIFTGVHLE-TLSTGELKAV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++   + +     K   +I+P K++     + ++ +  +++ +S S++    E+
Sbjct: 179 ATDSHRMSQRLLPLEDTDLK-FDVILPSKSINSFKNVFTNDEEEIEIFISGSQMLFQNET 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLS 291
           +S   RLI+G +P+   +IP   D    L  +   LR  +DR  +++ +     VKL++S
Sbjct: 238 ISYYSRLIEGSYPDTNRLIPNEADYTLDLVFDAAQLRHTMDRARLLTIMTTNGTVKLTVS 297

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            D +  T ++P++G   E +         + I FN +YL++ +  I +      EV  R 
Sbjct: 298 GDSVVTTANSPEVGSVHEELTALSKEGNDLSISFNPEYLIDALKVIKA-----PEVRIRF 352

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            S+     ++ ++++S            ++ P+R
Sbjct: 353 ISNIRPFTLQPRNEES--------GFVQLITPVR 378


>gi|320527129|ref|ZP_08028316.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204]
 gi|320132457|gb|EFW25000.1| DNA polymerase III, beta subunit [Solobacterium moorei F0204]
          Length = 373

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/391 (20%), Positives = 178/391 (45%), Gaps = 28/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T+ +++    L    R I   +       + +   D  + +  S  +I I   I A+
Sbjct: 1   MNLTISKTEFYNTLQLVSRAISPNSPQTSLRGLKIDVKDNSMVVTGSDADISIQHTITAN 60

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + +  L +IVRK+ D  +I     +  G+    S   + F +    
Sbjct: 61  DKNKLNILEEGSILIESKYLLEIVRKI-DSEEIHVEIID--GSLTKFSGNSAVFKINGMN 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P+    +   S  ++SSV+ +++E+T FA + +E +  L G+ FH++  D  LC  
Sbjct: 118 PHDYPTIDFSKPANSVVISSSVMSDIIEQTTFATSIKETKPVLTGVNFHLS--DNTLCCT 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIE 233
           ATD +RLA   +   +      ++ +P K++ E+   +   D   +++ L++ +     E
Sbjct: 176 ATDSYRLAKKTIPFTSS--DNFNVTIPSKSLNEVKSTMIGDDSGEIQIYLNDKKAQFVNE 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            + +  RL+DG +P    +IP      L +N ++L  A+DR + + +  +   +L  S+D
Sbjct: 234 DMILQTRLLDGGYPETDRLIPKEFKYTLEINRSDLIHAIDRTTFIKTDNMTINRLQCSTD 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +T  + ++G++ E++   +   P+DI F+  Y++E   +I  D+     +       
Sbjct: 294 EVVLTNKSQEIGESHETLVGTFTGEPLDISFSGNYVMEAARSIRGDK-----LKIEFVGE 348

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                +  ++  +            +++P+R
Sbjct: 349 MRPFILSSEEDPTI---------LQLVLPVR 370


>gi|167957124|ref|ZP_02544198.1| DNA polymerase III, beta subunit [candidate division TM7
           single-cell isolate TM7c]
          Length = 366

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 82/388 (21%), Positives = 159/388 (40%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++V + +  + L +A RI   +  +P+  ++LL+ +   L + A   E+     I   
Sbjct: 1   MELSVLQENFTKALNNASRIATSRTQLPILNNILLRTDGNRLLVAAMNMEVATMHYIGTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A L+ + V  L         +    G  + I  G  +  +      +FP 
Sbjct: 61  IIKPGSITVPARLITEFVSSLPKEKIDLKVE----GEHLIIKAGKYSSVINGIAADDFPE 116

Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               +   +   E+A    K  V +T  A + +  R  L G++++  E +L L    TDG
Sbjct: 117 LPAIDENTAIQYEIAPHDFKQAVNQTIIAASNDAARPILTGVYWYSFEGNLYL--AGTDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RLA   +          + I+P  ++ E LR+++   S V +   ES++   I+   ++
Sbjct: 175 YRLAERCL---VSTESEVAAIIPTNSLQEALRVINDNTSQVTILFDESQVRFKIDDTEIT 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLC 296
            +LIDG FP Y+ +IP SN+  + +   +  +      + S     +V ++      +L 
Sbjct: 232 SQLIDGNFPPYRQLIPVSNETNVIIKKDDFMRITKIAGLFSRDSGGSVTITADSEKGELS 291

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +     ++G+               I  N +Y+ E +  I       D V F      + 
Sbjct: 292 LHSVASELGENTSEATAKIEGGG-TITLNSRYISEALSVIDG-----DTVKFSFSGKLAP 345

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +K          N  +++MP++
Sbjct: 346 TVFESNEK--------NANYKHIIMPLK 365


>gi|327542303|gb|EGF28790.1| DNA polymerase III, beta subunit [Rhodopirellula baltica WH47]
          Length = 440

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 169/389 (43%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKIT +R  +      A  I   ++   +  +V + A    + + A+  E+ I   +   
Sbjct: 69  MKITCQRDILANAFVLAASIAPSRSPKEILQNVKVTAAGDKITLMATDQEVGIRLDVSEG 128

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V+  G+  +       I+R+  D        E      + IS   S F L      EF
Sbjct: 129 IEVETEGTALLPVARTGPILRESNDETITIETDEAG----IKISGSRSKFRLPGNNPDEF 184

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS  E +     ++++   + ++ RT FA  +E  RY L G+   + E    + AV TDG
Sbjct: 185 PSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALGGVLLEMEENS--VIAVGTDG 242

Query: 179 HRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
            RLA  E    +         + IVP +A+G I R LS KD  V+V+   + + +     
Sbjct: 243 RRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEKDDFVEVASRGNDLLIRTPRA 302

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +S RL++G +PN++ V+P   N  ++ V    L  A+ + +I++ +  + V  + +   
Sbjct: 303 VISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQAAIVTDLDSRGVDFTFADGT 362

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     D+G++   + + Y+   + +  +++YL +    + ++      VV  ++S+ 
Sbjct: 363 LKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCKVMDNE----STVVMEIESAK 418

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S   ++  D              YV+MPM
Sbjct: 419 SPALLQTDD-----------GYAYVIMPM 436


>gi|296125981|ref|YP_003633233.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563]
 gi|296017797|gb|ADG71034.1| DNA polymerase III, beta subunit [Brachyspira murdochii DSM 12563]
          Length = 375

 Score =  247 bits (631), Expect = 2e-63,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 184/389 (47%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    + DI++ +G    ++E K    +  +VL      +L + A+   +     I   
Sbjct: 1   MRFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTATDGSVWARSRIILD 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G++ V A  +  I++++ DG      +ENE    +   +G +   +      +FP
Sbjct: 61  DCEGEGAVAVYAKKISSILKEMPDGLITINVEENEKIN-IESENGKTKHLIIGMKTDDFP 119

Query: 120 STKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           +  E     S   L +  L  ++ +T  ++A E  +  L GI F   + D K  AVATDG
Sbjct: 120 AYPESNGDISYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
            R+AV E +         SII+  K + EIL   +  +   VK+ +   +++  I     
Sbjct: 178 RRMAVIEREFEGVENGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQIGKYDF 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDKLC 296
              LI+G++PN++ VIP       RVN  +L  A+ R V +++ VR + + L++S + L 
Sbjct: 238 VSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRIVPMINDVRSKRMILTVSEESLK 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +MG+++E +++ Y+     + +NY Y+ ++I  I S+      V F ++  +S 
Sbjct: 298 VKGINQEMGESLEEIDIKYSGEEHSVAYNYTYIQDVIKQIDSEI-----VTFMVNKDSSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  +++         + +Y++MPM I
Sbjct: 353 TMVKEIERE---------DYYYIIMPMSI 372


>gi|291558312|emb|CBL35429.1| DNA polymerase III, beta subunit [Eubacterium siraeum V10Sc8a]
          Length = 365

 Score =  247 bits (631), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 186/385 (48%), Gaps = 26/385 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K +V+++DIL+ L    +    K+ I     + L      L +     E+ I   I    
Sbjct: 3   KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTIDVEG 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G + +++ L+ DIVRK+  G  I  F E E   ++N+   D  + +      E+P  
Sbjct: 63  ESDGVLVLNSRLICDIVRKMPSG--IIRFDEYEP-LKLNLMCEDITYSIMGINSEEYPVL 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E     SFE++  +LK+++ +T +A+AT + +  L G  F I   +L + +V  DG R+
Sbjct: 120 PELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV--DGIRI 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240
           A+ +  ++ +       +VP K + E+LR+LS  +S +  VS+  ++   +I+  ++  R
Sbjct: 178 AIRKESLLHED---FDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299
           L++G+F +Y  +I   ++ E  VN   L + VDR  ++ + +I+  V  + S + L +  
Sbjct: 235 LLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +GK  + +   Y+     I FN +Y+L+ + N   D+V    V       N+++ I
Sbjct: 295 ETA-IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQ------NTALKI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
              + DS           +++ P+R
Sbjct: 348 VPLEGDS---------FTFIVSPVR 363


>gi|291531950|emb|CBK97535.1| DNA polymerase III, beta subunit [Eubacterium siraeum 70/3]
          Length = 365

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 93/385 (24%), Positives = 183/385 (47%), Gaps = 26/385 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K +V+++DIL+ L    +    K+ I     + L      L +     E+ I   I    
Sbjct: 3   KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTIDVEG 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G + +++ L+ DIVRK+  G       E     ++N+   D  + +      E+P  
Sbjct: 63  ESDGVLVLNSRLICDIVRKMPSGVIRFDEYE---PLKLNLMCEDITYSIMGINSEEYPVL 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E     SFE++  +LK+++ +T +A+AT + +  L G  F I   +L + +V  DG R+
Sbjct: 120 PELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV--DGIRI 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240
           A+ +  ++ +       +VP K + E+LR+LS  +S +  VS+  ++   +I+  ++  R
Sbjct: 178 AIRKESLLHED---FDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299
           L++G+F +Y  +I   ++ E  VN   L + VDR  ++ + +I+  V  + S + L +  
Sbjct: 235 LLEGDFFDYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +GK  + +   Y+     I FN +Y+L+ + N   D+V    V       N+++ I
Sbjct: 295 ETA-IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQ------NTALKI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
              + DS           +++ P+R
Sbjct: 348 VPLEGDS---------FTFIVSPVR 363


>gi|254230348|ref|ZP_04923734.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25]
 gi|151937140|gb|EDN56012.1| hypothetical protein VEx25_0001 [Vibrio sp. Ex25]
          Length = 256

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 85/273 (31%), Positives = 163/273 (59%), Gaps = 17/273 (6%)

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P ++FP+ ++ +      L+ + L+ L+++T F+MA +++RYYLNG+ F I  +   L 
Sbjct: 1   LPANDFPNIEDWQSEVEVSLSQADLRTLIDKTQFSMANQDVRYYLNGMLFEI--DGTTLR 58

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           +VATDGHR+AV++  + A  A+   IIVPRK V E+++++ + +  V + +  S +   +
Sbjct: 59  SVATDGHRMAVSQTQLGADFAQ-KQIIVPRKGVQELVKLMDAPEQPVVLQIGSSNVRAEV 117

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
            + + + +L+DG FP+Y+ V+P S +K L  +C  LRQA  R +I+S+ + + V+++L+ 
Sbjct: 118 NNFTFTSKLVDGRFPDYRRVLPQSTNKTLIASCDELRQAFSRAAILSNEKFRGVRVNLAD 177

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            ++ +T +NP+  +A E ++V +    ++I FN  Y+L++++ +       + V   +  
Sbjct: 178 TEMRITANNPEQEEAEEMLDVTFEGDAIEIGFNVSYVLDVLNTLRC-----ENVRVSMSD 232

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +N+S  I   D DS         A YV+MP+R+
Sbjct: 233 ANASALIENADDDS---------AMYVVMPIRL 256


>gi|167751446|ref|ZP_02423573.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702]
 gi|167655692|gb|EDR99821.1| hypothetical protein EUBSIR_02442 [Eubacterium siraeum DSM 15702]
          Length = 365

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 94/385 (24%), Positives = 183/385 (47%), Gaps = 26/385 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K +V+++DIL+ L    +    K+ I     + L      L +     E+ I   I    
Sbjct: 3   KFSVQKNDILDALTTTAKAASTKSVISALEGIHLSLTGNQLTVTGYDLELGIKSTIDVEG 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G + +++ L+ DIVRK+  G       E     ++N+   D  + +      E+P  
Sbjct: 63  ESDGVLVLNSRLICDIVRKMPSGVIRFDEYE---PLKLNLMCEDITYSIMGINSEEYPVL 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E     SFE++  +LK+++ +T +A+AT + +  L G  F I   +L + +V  DG R+
Sbjct: 120 PELSRGESFEISEPLLKSVIGQTLYAVATIDTKPVLMGSKFEIKNNELNVISV--DGIRI 177

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVR 240
           A+ +  ++ +       +VP K + E+LR+LS  +S +  VS+  ++   +I+  ++  R
Sbjct: 178 AIRKESLLHED---FDFVVPAKTLSELLRLLSDDESKIATVSVDRNQGIFSIDKYTVFSR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ-AVKLSLSSDKLCMTV 299
           L++G+F NY  +I   ++ E  VN   L + VDR  ++ + +I+  V  + S + L +  
Sbjct: 235 LLEGDFFNYTKIIGMPSNIEAVVNVRELMECVDRTLLLLNDKIKSPVDFTFSDNTLRVFC 294

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +   +GK  + +   Y+     I FN +Y+L+ + N   D+V    V       N+++ I
Sbjct: 295 ETA-IGKLDQKIKCDYSGEEFRISFNSRYILDALKNTYCDKVKFLFVQ------NTALKI 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
              + DS           +++ P+R
Sbjct: 348 VPLEGDS---------FTFIVSPVR 363


>gi|32476252|ref|NP_869246.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1]
 gi|32446796|emb|CAD76632.1| DNA polymerase III, beta chain [Rhodopirellula baltica SH 1]
          Length = 444

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 169/389 (43%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MKIT +R  +      A  I   ++   +  +V + A    + + A+  E+ I   +   
Sbjct: 73  MKITCQRDILANAFVLAASIAPSRSPKEILQNVKVTAAGDKITLMATDQEVGIRLDVSEG 132

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V+  G+  +       I+R+  D        E      + IS   S F L      EF
Sbjct: 133 IEVETEGTALLPVARTGPILRESNDETITIETDEAG----IKISGSRSKFRLPGNNPDEF 188

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           PS  E +     ++++   + ++ RT FA  +E  RY L G+   + E    + AV TDG
Sbjct: 189 PSVHEFDESKYHQISTRTFREMLRRTVFATDSESSRYALGGVLLEMEENS--VIAVGTDG 246

Query: 179 HRLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
            RLA  E    +         + IVP +A+G I R LS KD  V+V+   + + +     
Sbjct: 247 RRLARMEGTGESVGGHATSGMTTIVPTRAIGLIERALSEKDDFVEVASRGNDLLIRTPRA 306

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +S RL++G +PN++ V+P   N  ++ V    L  A+ + +I++ +  + V  + +   
Sbjct: 307 VISSRLVEGRYPNWRQVLPQRENAIQIDVVVGPLFAALRQAAIVTDLDSRGVDFTFADGT 366

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     D+G++   + + Y+   + +  +++YL +    + ++      VV  ++S+ 
Sbjct: 367 LKLEAKTADLGESQIELPIAYDGESITLTMDHRYLADFCKVMDNE----STVVMEIESAK 422

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S   ++  D              YV+MPM
Sbjct: 423 SPALLQTDD-----------GYAYVIMPM 440


>gi|260891932|ref|YP_003238029.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
 gi|260864073|gb|ACX51179.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
          Length = 372

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 75/393 (19%), Positives = 166/393 (42%), Gaps = 30/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M+ T+ + D+  +L    R I  K ++P    +L +     L   A+  ++++T  +P  
Sbjct: 1   MQFTISQEDLERVLSVCLRCIPSKPSMPQLAGILFRKEGSKLTATATDLDVQVTVELPRV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G + + A   +D+VR+L +   +   +      +V +S+      L      EFP
Sbjct: 61  NLEEEGELWLPAKETFDLVRRLPEDVLVELRQAG--SNQVLLSYPGGEARLAGMDPGEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              E+      E     L + +    +A A +++R    G+    +  + +L   ATDGH
Sbjct: 119 LI-EQSVEEVLEFPGEGLLDALRYVLYAAAPDDLRPIFTGVEISYSSPEGELTFAATDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGE---ILRILSSKDSSVKVSLSESRIHLNIESLS 236
           RLAV       +  ++ S +VP + + E   + R+L   +   ++ L ++    + E + 
Sbjct: 178 RLAVFRR---GEEPRLESRVVPAQYLKEVLVLGRLL--GEEPKRIRLGKTTASFHWEEVE 232

Query: 237 MSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL---SS 292
           +  RLI+G+FP++Q  +P       L +    L   ++R  +++  +   V         
Sbjct: 233 LYSRLIEGKFPDWQQALPKDPPATSLSLTVGTLLSCLERARVIARAQASGVPAVFLVKEG 292

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + + +   + + G+  E ++       + + FN  YL+E +  +  +     EV+  L  
Sbjct: 293 EGVRIEARS-EAGEFKEHVDGRAEGEDLTLAFNADYLMEALRVLDREA----EVLVSLYG 347

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + I            +      +++P+R+
Sbjct: 348 PMAPIIITS---------GSCKEYLALVLPLRL 371


>gi|307699829|ref|ZP_07636880.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16]
 gi|307614867|gb|EFN94085.1| DNA polymerase III, beta subunit [Mobiluncus mulieris FB024-16]
          Length = 381

 Score =  247 bits (630), Expect = 3e-63,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 168/392 (42%), Gaps = 22/392 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M++ + R  + E +  + R I ++  +PV   V + A    +E  +    +     + P 
Sbjct: 1   MELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G++ V   LL +  R L +  +IS          ++I+ G  +  L   PE ++P
Sbjct: 61  ELITEGTVVVDGKLLSETARALPN--KISEVSFKTEDNYLHITCGSFHQQLLVMPEEDYP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +   V      + V  + + +   A + +E    L GI   I  E  KLC +ATD +
Sbjct: 119 QLPQLPQVVGQV-DAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDRY 175

Query: 180 RLAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIE 233
           R+A+ E+   A   ++   ++V  K + +  + ++S   S+ +++         + L+  
Sbjct: 176 RMALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAG 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSS 292
               + ++ DG +P+ + + P   +    V  ++   A  RV+I+S ++  Q + LS + 
Sbjct: 235 GRLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQ 294

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             L     +     A +++ V  N   + + FN + L+E +  +      +  V      
Sbjct: 295 GTLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLSVVD-----EPYVRLSFKD 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               V I G+ ++     D+ ++  Y++MP+R
Sbjct: 350 ETKPVIITGQKEE---TGDDSLDFQYLIMPIR 378


>gi|317050201|ref|YP_004111317.1| DNA polymerase III subunit beta [Desulfurispirillum indicum S5]
 gi|316945285|gb|ADU64761.1| DNA polymerase III, beta subunit [Desulfurispirillum indicum S5]
          Length = 368

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 181/386 (46%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+  +E+ D+ + L  A  I   KN T  +  ++ ++A   L+ I ++   I +T  I A
Sbjct: 1   MRFEIEKKDLEKTLFKAHGICNSKNITNNILTNIQIKAESDLIRINSTDRNISLTSTISA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   GS+ V+    Y+ +++L +   I    +N     + I+   + F L +   + FP
Sbjct: 61  NIQETGSVLVNGKKFYEAIKELPNNIVIIERVDNT----LTIACQKTQFKLFTSDPTLFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               +       + +  L++++ +T F     + ++ +NG    +     K+  VATDGH
Sbjct: 117 ELDLQLGESPVVIPALKLRDILIKTFFCSTETQTKFGVNGTLLKLQGN--KITTVATDGH 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL ++ +    Q +    +++PR ++ EI+++L+  D  +KV + E+ I    +  ++  
Sbjct: 175 RLGLSAISTDQQYSDNE-VVIPRNSLNEIVKVLTDVDEDIKVHIDENAIVFATQQDTIKT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            L+  +FP Y  VIP      L+++   +++ + R+SI  +  ++ VK S+    L  T+
Sbjct: 234 NLLKKKFPPYGKVIPDECPVSLQISTKKIKETLKRLSIFVNENVKIVKFSVEDKILVATI 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + + G A E + + Y     +I +N +   EII++I S+          L+ S S   I
Sbjct: 294 QSQEHGNAREVIEIEYEGNNFEIGYNVRLFNEIINHIESETF-----TLALNESLSVSVI 348

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           R  D              YVLMP R+
Sbjct: 349 RPGDN------KKDEQTLYVLMPNRL 368


>gi|212694909|ref|ZP_03303037.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855]
 gi|212662469|gb|EEB23043.1| hypothetical protein BACDOR_04446 [Bacteroides dorei DSM 17855]
          Length = 340

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/338 (25%), Positives = 162/338 (47%), Gaps = 13/338 (3%)

Query: 35  LQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN 93
           ++  DG L + AS  E  ++ ++     D  G   VS+  + + ++++ +      F  N
Sbjct: 1   MELTDGTLSLTASDSETTLSTSLEVNESDGDGRFAVSSKTILEALKEIPEQP--LTFLVN 58

Query: 94  ELGTEVNISHGDSNFYLQSFPESEFPSTKE-EEYVYSFELASSVLKNLVERTHFAMATEE 152
               E+ + + +  + L      E+P             + + V+   + R+ FA A +E
Sbjct: 59  TENLEITVQYQNGKYSLMGQNADEYPQAPALGANAVHVTMGAPVMLAGINRSLFATADDE 118

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
           +R  +NGI+F I  ED+    VA+DGH+L V     VA   +  + I+P+K    +  +L
Sbjct: 119 LRPVMNGIYFDITTEDITF--VASDGHKL-VRNKTFVAHGDEKAAFILPKKPATLLKNLL 175

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
             +   V++   +      +E+ SM  RLI+G +PNY +VIP  N  +  ++   L  A+
Sbjct: 176 PKEQGDVQIDFDDRNATFTLENYSMICRLIEGRYPNYNSVIPQDNPHKATIDRMTLISAL 235

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLE 331
            RVS+ SS     +KL LS +++ ++  + D    A E++   Y   PM I F   +L++
Sbjct: 236 RRVSVFSSQASSLIKLRLSENQIQISAQDIDFSTSAEETLTCQYTGSPMSIGFKSTFLID 295

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
           I++NIS+      E++F L   + +  I   +++   +
Sbjct: 296 ILNNISAQ-----EILFELADPSRAGVIVPVEQEENED 328


>gi|328476246|gb|EGF46930.1| DNA polymerase III subunit beta [Lactobacillus rhamnosus MTCC 5462]
          Length = 334

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 74/350 (21%), Positives = 151/350 (43%), Gaps = 29/350 (8%)

Query: 46  ASGPEIEITGAIPA-------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE 98
            S  +I I   I A        +   G I + A    +IV++L +       K+N    +
Sbjct: 1   GSDADISIESTINAADESNDLQIGSTGEIVLPARFFSEIVKRLPESTMTVEVKDN---FQ 57

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
             I+ G S F ++    + +P   E     +  + + VL+ L+ +T  A++T+E R  L 
Sbjct: 58  TVITSGASEFTIRGEDANNYPRLPEITADEALTVPADVLRQLINQTVIAVSTQESRPILT 117

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218
           G+   I  +  +L AVATD HRL+   + + A       II+P K++ E+ R+L    + 
Sbjct: 118 GVHLTITGD--QLVAVATDSHRLSQRTLTLPAASNIDYDIIIPGKSLTELSRMLGDDVTK 175

Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           +++ ++E+++       +   RL++G +P+   +IP S++ +   +   L  ++ R S++
Sbjct: 176 IEIRIAENQVLFVFGQTAFYSRLLEGNYPDTSRLIPTSSNTQAEFDAPALLASIQRASLL 235

Query: 279 SSVRIQAV---KLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIID 334
           S      V    L++   K  +  ++PD+G   E ++        ++I FN  Y+ + + 
Sbjct: 236 SHESSNNVVRLVLNIGEQKATIYGNSPDVGNVEEVLSFNKLTGQDLEISFNPDYMKDALQ 295

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +  D       +      +   +         K     ++ P+R
Sbjct: 296 GFGQTAIEVD-----FTAPLRPFTLVPTED--------KEKFIQLITPVR 332



 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 25/163 (15%), Positives = 57/163 (34%), Gaps = 9/163 (5%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP-EIEITG-AIPAS 60
           +TV    + +L+      +  + + P+   V L      L   A+    +      +PA+
Sbjct: 89  LTVPADVLRQLINQTVIAVSTQESRPILTGVHLTITGDQLVAVATDSHRLSQRTLTLPAA 148

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY---LQSFPESE 117
            ++   I +    L ++ R L  G  ++  +      +V    G + FY   L+      
Sbjct: 149 SNIDYDIIIPGKSLTELSRML--GDDVTKIEIRIAENQVLFVFGQTAFYSRLLEGNYPDT 206

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLN 158
                      +   A ++L ++   +  +   +   +R  LN
Sbjct: 207 SRLIPTSSNTQAEFDAPALLASIQRASLLSHESSNNVVRLVLN 249


>gi|308234058|ref|ZP_07664795.1| DNA polymerase III, beta subunit [Atopobium vaginae DSM 15829]
 gi|328943455|ref|ZP_08240920.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM
           15829]
 gi|327491424|gb|EGF23198.1| DNA-directed DNA polymerase III beta subunit [Atopobium vaginae DSM
           15829]
          Length = 369

 Score =  246 bits (629), Expect = 4e-63,   Method: Composition-based stats.
 Identities = 86/387 (22%), Positives = 170/387 (43%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V + +  + +    R +  + T+PV   + +QA    L ++    ++ I   + A+
Sbjct: 1   MKFSVSQKEFNQAITIVLRGVASQATLPVLGGIYIQAQGSTLTLQTCDLKVSIRHKLEAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G   V    L  +V+ L D             T+  ++   S + L +   ++FP 
Sbjct: 61  VEEEGQTVVPGLFLSKLVKNLPDAPITMETTP----TQAILTCLKSTYELSTLDAADFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S EL S +L ++VER +     +     L GI     E   KL   ATD HR
Sbjct: 117 FPDITPSQSIELPSDLLNDMVERVYRVTKEDISNPILGGITLVAQEN--KLTMYATDSHR 174

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L + + +   A I    + I+P     E+L + +     +++ L+++++  + E+ +   
Sbjct: 175 LVIIDTNTETASIDSEFTAIIPAVCFHELLNLPTITP-RLQIGLTDNQVIFSFENTTYVS 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK--LCM 297
             I+G FPNY+N+ P + + +L VN   L QA+ RV+++++ +   V   +      + +
Sbjct: 234 LKIEGMFPNYKNLFPTTCNTKLTVNPEQLTQAIKRVALVTTNKNLGVIFDVDPQNQLITL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             D+ + G + E  +      P+    NY+++LE   +        DE+ F +  S   +
Sbjct: 294 KADSSEFGASKEEFSATIEGNPISFSMNYQFILECCRS----TTHADEMTFEIVDSFQPI 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            I+             +N   +L+P+R
Sbjct: 350 VIKS---------FGTMNYQCLLIPLR 367


>gi|87308269|ref|ZP_01090410.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645]
 gi|87288826|gb|EAQ80719.1| DNA polymerase III, beta chain [Blastopirellula marina DSM 3645]
          Length = 372

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 82/389 (21%), Positives = 171/389 (43%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKIT +R    +    A  +   ++  P+  ++ L A +    + A+  E+ +   +   
Sbjct: 1   MKITFDREQFQQAFQTAAAVAPSRSPKPILQNIKLDATESGAIMMATDMEVGVRIEVSGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  GSI +       I+R++ D       +E        +    S F L +    EFP
Sbjct: 61  EVEAPGSIVLPVQRFGSILREVSDEKLRITREEGG----TIVQGERSKFTLSTENPEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +          EL++  LK L+ RT FA  +E  RY L GI   +  + +   AVATDG 
Sbjct: 117 AVHSFTETKYHELSARTLKELIRRTLFAADSESGRYALGGILLEMEADQVT--AVATDGR 174

Query: 180 RLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           RL+      VA      A     IVP +A+  I + L++ +++V+++   + + + + + 
Sbjct: 175 RLSKMSGPAVAIEGHGSASEVMTIVPARAMQLIEKALTNLEATVQIAARSNDVLVKVGAA 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKE-LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           ++  RL++G FP +++V+P   D + + +       A+ + +I++S   + +  +     
Sbjct: 235 TIYARLVEGRFPKWRDVLPEKRDAKAIELTVGPAFAALRQAAIVASDESRGIDFTFGGGS 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             ++    ++G++     + Y+  P++I  +++Y+ +    +  +     +    L  ++
Sbjct: 295 AVLSSTTAEVGQSHVEFPIAYDGDPVEITMDHRYVADFYKVLDGER----QFTLNLQDAD 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           S+      D           N  YV+MP+
Sbjct: 351 SAALFSTDD-----------NYDYVVMPL 368


>gi|325300579|ref|YP_004260496.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
 gi|324320132|gb|ADY38023.1| DNA polymerase III, beta subunit [Bacteroides salanitronis DSM
           18170]
          Length = 373

 Score =  246 bits (628), Expect = 5e-63,   Method: Composition-based stats.
 Identities = 95/388 (24%), Positives = 180/388 (46%), Gaps = 20/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL-LEIKASGPEIEITGAIPA 59
           MK TV  + +   L    +++  K  +P+    LL+  +   LE+ AS  E    G++  
Sbjct: 1   MKFTVSSTAMANKLATMAKVMNNKPALPILSTFLLEVKEDAPLEVTASDLECVWHGSLDI 60

Query: 60  SVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +     G + ++A  L D VR L +        + +    V I + + ++ +  F   E+
Sbjct: 61  TGQEGAGKVCITASTLLDAVRNLPEQPITFTIDDKDKS--VTIHYLNGHYGMAGFGSDEY 118

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  +  E    F++ ++ L N ++++ FA++ + +R  + GI + I+  D KL   A+DG
Sbjct: 119 PMMQN-ECDIRFDMDAATLCNSIDQSLFAVSYDALRPVMTGINYTIS--DGKLECAASDG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L      + A  A     ++  KA   +  +L  K+ SV+V  +   I    ++ S S
Sbjct: 176 HKLVRNTYPL-AGNADDCRFVLSAKAAKIVKLLLHKKEGSVEVEYNGRNIVFKTDTDSFS 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY  ++P +++KE  ++   L  A+ RV + +    + + LS S   L +T
Sbjct: 235 TRLIEGTYPNYNAIVPTNSNKEATIDRQALLSAIRRVGVFAERTSRQLVLSFSGMALLLT 294

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++   Y    + I F+ + L  I++N+ +      EV FR+  +  + 
Sbjct: 295 GHDFDNATSAEETVFCTYQGDEVRIAFHAENLKMILENMDTA-----EVRFRMSEACRAA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I     D ++          +LMPM +
Sbjct: 350 IIEPVSGDVQSEH------LALLMPMML 371


>gi|323939115|gb|EGB35329.1| DNA polymerase III beta subunit protein [Escherichia coli E482]
          Length = 232

 Score =  246 bits (628), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/249 (36%), Positives = 146/249 (58%), Gaps = 17/249 (6%)

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           +K L+E T F+MA +++RYYLNG+ F    E+L+   VATDGHRLAV  + I  Q     
Sbjct: 1   MKRLIEATQFSMAHQDVRYYLNGMLFETEGEELR--TVATDGHRLAVCSMPI-GQSLPSH 57

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           S+IVPRK V E++R+L   D+ ++V +  + I  ++     + +L+DG FP+Y+ V+P +
Sbjct: 58  SVIVPRKGVIELMRMLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKN 117

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            DK L   C  L+QA  R +I+S+ + + V+L +S ++L +T +NP+  +A E ++V Y+
Sbjct: 118 PDKHLEAGCDLLKQAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYS 177

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              M+I FN  Y+L++++ +       + V   L  S SSV I               +A
Sbjct: 178 GAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQIEDA---------ASQSA 223

Query: 377 FYVLMPMRI 385
            YV+MPMR+
Sbjct: 224 AYVVMPMRL 232


>gi|222528060|ref|YP_002571942.1| DNA polymerase III subunit beta [Caldicellulosiruptor bescii DSM
           6725]
 gi|222454907|gb|ACM59169.1| DNA polymerase III, beta subunit [Caldicellulosiruptor bescii DSM
           6725]
          Length = 368

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 170/389 (43%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++  + + +              +   VL++A D  +    +  ++++     A 
Sbjct: 1   MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAED-RIIFTTNDMKMQMQTEFEAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS  + A LL DIV+KL  G      +ENE    V I      F L +    +FP 
Sbjct: 60  ILERGSALLKAKLLSDIVKKLPSGDVEVIREENE----VKIRSQKIEFRLPTLEPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +      E  +S   + V++  FA + +E R    G+ F   E+D  +  V  DGHR
Sbjct: 116 MDRKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFE-KEDDDFVNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++  VA +    S IVP + + +I +I+  ++   V+VS  E++    I S ++ +
Sbjct: 175 LAICKIKPVA-VEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVIL 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296
            LI G+F +Y++ IP     ++ ++   L   ++R SI+S      IQAV    +     
Sbjct: 234 TLISGKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + D G+  E +        + + FN KY L+++  +        E+   + S  S 
Sbjct: 294 VKSVSAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D           N  Y+++P+++
Sbjct: 347 SIVQKPDDP---------NYIYLVLPIKM 366


>gi|303233435|ref|ZP_07320103.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4]
 gi|302480443|gb|EFL43535.1| DNA polymerase III, beta subunit [Atopobium vaginae PB189-T1-4]
          Length = 369

 Score =  245 bits (627), Expect = 6e-63,   Method: Composition-based stats.
 Identities = 89/387 (22%), Positives = 178/387 (45%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +V ++   + L   CR +  +NT+ +   V + A++G L ++ +  ++ I  AI A+
Sbjct: 1   MKFSVSQTSFNQALSIVCRGLSSQNTMAILAGVYIHASEGTLTLQTTDLKVSIKHAISAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ VS  LL  IV+ L D A      +    T+  ++   ++F L +    +FP 
Sbjct: 61  VEEEGSVVVSGALLLKIVKNLPDAAITLTSTD----TQAQLTCQKASFTLATLNPEDFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     EL +S+L ++V++       +     L+GI    +E   KL   ATD HR
Sbjct: 117 FPVLNPNQVVELPTSLLTSMVDKVFRVTKDDIANPILSGITLVAHEN--KLSMYATDSHR 174

Query: 181 LAVAEVDIVAQI-AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L + +         +  + I+P  A  E+L + S  D ++ + L +++I  + E+ +   
Sbjct: 175 LVIIDTSTETSSLTEEFNAIIPATAFHELLSLPSLTD-TITLGLCDNQIVFSCENTTFVT 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS--DKLCM 297
             I+G FPN++N+ P +   +L  N T L   + RV+++++     V   ++     L +
Sbjct: 234 LKIEGMFPNFKNLFPTTCATKLTCNPTELSAVIRRVALVTTNSDLGVVFDINPQTQTLTL 293

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             D+ + G + E   V+     +    NY+++ E   + ++     DE+ F +  +   +
Sbjct: 294 KADSVEYGTSQEEFAVHIEGASVQFSMNYQFITECTKSCTNK----DEITFEIVDNMQPI 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            ++             +N   +L+P+R
Sbjct: 350 VVKS---------FGTINYQCLLIPLR 367


>gi|320449108|ref|YP_004201204.1| DNA polymerase III subunit beta [Thermus scotoductus SA-01]
 gi|320149277|gb|ADW20655.1| DNA polymerase III, subunit beta [Thermus scotoductus SA-01]
          Length = 371

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 90/395 (22%), Positives = 172/395 (43%), Gaps = 34/395 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V ++ + E +    R+I  +++ P+  ++ L      L +  +  E+++   +   
Sbjct: 1   MKVKVPKTLLTEHVALLERVIPTRSSNPLFTYLGLALTPDALVLFGTNGEVDLEVRLELP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +  G   V A   + +V+ L          E + G E+++S G  +  L   P+  +P 
Sbjct: 61  TEGEGRFLVPAQPFFQLVKSLPGDQ-----VELDFGAELSLSSGSFSTRLSLAPDEGYPE 115

Query: 121 T-------KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
                     E Y     L    L   +    +A + EE R    G+    +E  L+  +
Sbjct: 116 LFFPSLEGPAEPYPLQTLLPVEELLKALSHVRYAASNEEYRAIFRGVQLEFSEGGLR--S 173

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI 232
           VA+DG+RLA+    +         ++VP ++V E++R+L    +  V ++L    + L  
Sbjct: 174 VASDGYRLALYR--LAKPQPFAKKVVVPARSVDEMVRVLKGMGEGEVALALGPGVLGLAT 231

Query: 233 --ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
               L M+VRL++GEFP+Y+ VIP     +   +    R+A+ RVS++S  +   V L  
Sbjct: 232 GKGQLRMAVRLMEGEFPDYERVIPKEFPLKAAFDVEAFREALRRVSVLSDRQNHRVDLLF 291

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              ++ ++ +  D GK  E + V     P+ + +N +YLLE +  +S       + V  L
Sbjct: 292 EERRVLLSAEG-DYGKGQEEIPVRLEGLPLAVAYNARYLLEALSPLSG------QAVLLL 344

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               S   +R  +               V++P+R+
Sbjct: 345 SGPTSPSLVRPGEA--------AEGYQAVVVPLRV 371


>gi|312877903|ref|ZP_07737848.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           lactoaceticus 6A]
 gi|311795329|gb|EFR11713.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           lactoaceticus 6A]
          Length = 368

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++  + + +              +   VL++A D  +    +  ++++     A 
Sbjct: 1   MRFVVDKDILQDNISKVIPAAASTKVTSILECVLIEAEDS-IVFTTNDMKMQMQTEFEAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  V A L  DIV+KL  G      ++NE    V I      F L +    +FP 
Sbjct: 60  ILERGAALVKAKLFSDIVKKLPSGEVEVVREDNE----VKIRSQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +++      E  +S   + V++  FA + +E R    G+ F   E+D  +  V  DGHR
Sbjct: 116 MEKKPSESFCEFVASEFVDGVDKVIFATSKDETRPTFTGVLFEKEEDDF-VNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++  +A +    S IVP + + +I +I+  ++   V+VS  E++    I S ++ +
Sbjct: 175 LAICKIKPIA-VEGSFSKIVPAENLDDITKIVDIEEAEKVRVSFFENQATFEIGSTTVIL 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
            LI G+F +Y+  IP     ++ ++   L   ++R SI+S   +     +   ++ +  T
Sbjct: 234 TLITGKFFDYKGAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293

Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           V +    G+  E +        + + FN KY L+++  +        E+   + S  S  
Sbjct: 294 VRSMSADGRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSPS 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++  D           N  Y+++P+++
Sbjct: 348 IVQKPDDP---------NYIYLVLPIKM 366


>gi|294673576|ref|YP_003574192.1| DNA polymerase III subunit beta [Prevotella ruminicola 23]
 gi|294473619|gb|ADE83008.1| DNA polymerase III, beta subunit [Prevotella ruminicola 23]
          Length = 374

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 92/386 (23%), Positives = 167/386 (43%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+ T+  + +   L    R+I  KN +P+    L +  + +L + AS  E  +   +   
Sbjct: 1   MRFTLSSTALSSKLVALSRVINSKNALPILGDFLFEIENNVLHLTASDSENVMKTQLELT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D      +  H L + V+   +      F  +     V I++ +  F L      EFP
Sbjct: 61  ESDGNFRFAIGNHDLLEAVKGFSEQPIT--FDVDLEQNLVKITYQNGLFSLPVDNADEFP 118

Query: 120 -STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            +    ++  S  L +++L   + R+ FA A +E+R  +NGI+F +  +   L  VA+DG
Sbjct: 119 VAQPVSDFAKSIVLPNAILAENINRSIFATAQDELRPVMNGIYFDLTPD--HLAVVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V       +  +  + I+P+K    +  +L      V +   E    +N     + 
Sbjct: 177 HKL-VRNKIFTIKSEEPSAFILPKKPANLLKNLLGKDGGDVTIRFDERNAEVNYGDGVLL 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  E+R++  +L  A+ RV   ++     V+  +      + 
Sbjct: 236 CRLIEGRYPNYNSVIPQNNPNEVRLDRLSLLAALRRVQPFANDSSNLVRFHVEGSTFQLD 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D  K A E M   YN  PM I F     +EI+ NI   +     V+ +L  S+ + 
Sbjct: 296 AEDYDFSKTATERMTCEYNGTPMSIGFKGNAFIEILGNIECSD-----VIIQLADSSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +   ++              ++MPM
Sbjct: 351 LVLPSEQP------ENQEVVMLMMPM 370


>gi|291294406|ref|YP_003505804.1| DNA polymerase III subunit beta [Meiothermus ruber DSM 1279]
 gi|290469365|gb|ADD26784.1| DNA polymerase III, beta subunit [Meiothermus ruber DSM 1279]
          Length = 361

 Score =  245 bits (627), Expect = 7e-63,   Method: Composition-based stats.
 Identities = 91/386 (23%), Positives = 180/386 (46%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  + E L    RII  +++ P+  ++ ++ +D  L ++ +  E++I   +PA 
Sbjct: 1   MEVRIPKRTLAEGLSILERIIPSRSSNPILTYLPMELSDQGLILRGTNGEVDIEVKLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V A     IVR          F   E    + +  G  N  L +     +P 
Sbjct: 61  VQGTGQVLVPAQTFVQIVRSAPGELVELIFGGKE---RLELHSGAFNTQLATTGPDGYPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     ++A+S L   + R  +A +TEE R    G+   ++   L+  AVA+DG+R
Sbjct: 118 LSFGPPGPE-KIAASRLAQAITRVRYAASTEEFRAIFRGVQIEMSPTSLR--AVASDGYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  ++ +  Q  K   +++P ++  EI+R+       V ++++E  + L  E++ MSV+
Sbjct: 175 LACYDLPMQLQTRK---LVIPARSADEIVRVFKDAQGEVALAVAEGTLTLVGEAVRMSVK 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GEFP+Y  VIP S   E  +    LR+++ RV+++S      V L  + +KL +  +
Sbjct: 232 LMEGEFPDYGRVIPQSFVLEATLQAEALRESLKRVAVLSDRNNHRVNLLFNHNKLDIDAE 291

Query: 301 NPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             D G+  E + +  +  P + + +N ++L++ +  I         V  +L    S   +
Sbjct: 292 G-DYGRGREELGIEASGEPQLMVAYNAQFLIDALAPIEGA------VRIKLSGPTSPSLV 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +               V++P+R+
Sbjct: 345 QAVED---------SGYLAVVVPLRV 361


>gi|313621670|gb|EFR92456.1| DNA polymerase III, beta subunit [Listeria innocua FSL S4-378]
          Length = 311

 Score =  245 bits (626), Expect = 8e-63,   Method: Composition-based stats.
 Identities = 83/323 (25%), Positives = 161/323 (49%), Gaps = 19/323 (5%)

Query: 65  GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           G I + +    DIVR+L +        E     + NIS G ++F L      E+P   E 
Sbjct: 3   GGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNGLDPMEYPKLPEV 59

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
               + ++  +VLKN++ +T FA++  E+R  L G+ + I +   KL AVATD HRLA+ 
Sbjct: 60  TDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKDN--KLSAVATDSHRLALR 117

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   ++ L    RL++G
Sbjct: 118 EIPLETNIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLLEG 177

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLCMTVDNP 302
            +P+   +IP     EL +N     QA+DR S+++      V   ++L + ++ ++ ++P
Sbjct: 178 SYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLMTLENGQVEVSSNSP 237

Query: 303 DMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
           ++G   E++    +    + I FN KY+++ +          D++      +     +R 
Sbjct: 238 EVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQISFSGTMRPFVLRP 292

Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384
           KD  + N          ++ P+R
Sbjct: 293 KDATNPNEI------LQLITPVR 309



 Score = 36.4 bits (83), Expect = 7.0,   Method: Composition-based stats.
 Identities = 16/100 (16%), Positives = 33/100 (33%), Gaps = 11/100 (11%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITG 55
            I +  + +  ++      +      PV   V     D  L   A+        EI +  
Sbjct: 64  NIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKDNKLSAVATDSHRLALREIPLET 123

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQ-ISFFKENE 94
               ++D   +I +    L ++ + L D ++ I     N 
Sbjct: 124 ----NIDEEYNIVIPGKSLAELNKILDDASESIEMTLANN 159


>gi|312792285|ref|YP_004025208.1| DNA polymerase III subunit beta [Caldicellulosiruptor
           kristjanssonii 177R1B]
 gi|312179425|gb|ADQ39595.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           kristjanssonii 177R1B]
          Length = 368

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 84/388 (21%), Positives = 170/388 (43%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++  + + +              +   VL++A D  +    +  ++++     A 
Sbjct: 1   MRFVVDKDILQDNISKVIPAAASTKVTSILECVLIEAEDS-IVFTTNDMKMQMQTEFEAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  V A L  DIV+KL  G      ++NE    V I      F L +    +FP 
Sbjct: 60  ILERGAALVKAKLFSDIVKKLPSGEVEVIREDNE----VKIRSQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +++      E  +S   + V++  FA + +E R    G+ F   E+D  +  V  DGHR
Sbjct: 116 MEKKPSESFCEFVASEFVDGVDKVIFATSKDETRPTFTGVLFEKEEDDF-VNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++  +A +    S IVP + + +I +I+  ++   V+VS  E++    I S ++ +
Sbjct: 175 LAICKIKPIA-VEGSFSKIVPAENLDDITKIVDIEEAEKVRVSFFENQATFEIGSTTVIL 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMT 298
            LI G+F +Y+  IP     ++ ++   L   ++R SI+S   +     +   ++ +  T
Sbjct: 234 TLITGKFFDYKGAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293

Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           V +    G+  E +        + + FN KY L+++  +        E+   + S  S  
Sbjct: 294 VRSMSADGRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSPS 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++  D           N  Y+++P+++
Sbjct: 348 IVQKPDDP---------NYIYLVLPIKM 366


>gi|218283255|ref|ZP_03489316.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989]
 gi|218216010|gb|EEC89548.1| hypothetical protein EUBIFOR_01905 [Eubacterium biforme DSM 3989]
          Length = 372

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 83/391 (21%), Positives = 169/391 (43%), Gaps = 29/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  +++R    + L    R I   + +P    + +   D  + +  S   I I   I   
Sbjct: 1   MHFSIDRKYFYDKLSIVSRAISVFSPLPALSGICIDLKDDSMTLTGSDSNISIRTVIVPG 60

Query: 58  ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 ++  GSI + +  L +IVRKL D   I     +   + V IS  +  F L    
Sbjct: 61  ELNNLDIEEEGSIIIDSKYLLEIVRKL-DCKNIEIEVID--YSLVRISSDNGQFNLNGIR 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P     +  + F L ++ LK++V +T FA + ++ R  L G+ F  N +   L   
Sbjct: 118 SNEYPDIDFTQPKHHFVLKATDLKSIVSQTAFACSDKDQRPVLMGVNF--NSQGNMLYCS 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD +RLA   +++    ++  +I +P K++ E++R +S  D ++ +     +     + 
Sbjct: 176 GTDSYRLARKTIEL--DSSQDFNITIPSKSLTEVVRSVSDDD-TIDIFADSKKAQFVFDK 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +  RLIDG FP+ Q +IP S   ++ V+   +   +DR + + + ++  +KL  +  +
Sbjct: 233 TIIQTRLIDGTFPDVQRIIPTSCVSKMLVDSYEIAGTIDRTNFIRNDKVHLIKLECTPQE 292

Query: 295 LCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
             +   + ++G + E +    Y    + +  N  Y+L+ I  +  ++V+           
Sbjct: 293 THVKTYSSEIGNSDEVLTKCEYEGEEISLTCNGTYMLDAIKALGCEKVL-----IEFSGF 347

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + +   +  S            +L+P+R
Sbjct: 348 MKPIKVSNPEDASV---------LMILVPIR 369


>gi|27904524|ref|NP_777650.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
 gi|31340042|sp|Q89B36|DPO3B_BUCBP RecName: Full=DNA polymerase III subunit beta
 gi|27903921|gb|AAO26755.1| putative DNA polymerase III beta chain [Buchnera aphidicola str. Bp
           (Baizongia pistaciae)]
          Length = 371

 Score =  245 bits (626), Expect = 9e-63,   Method: Composition-based stats.
 Identities = 96/385 (24%), Positives = 200/385 (51%), Gaps = 18/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK  +    +++ L     +I R +  P+  ++LL A D  + + ++  ++EI   I   
Sbjct: 1   MKFEILNKFLIKSLKKVNNLITRNHIFPILENILLIAKDNTITLTSTNIDMEIKIIILDV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   GSITVS   + +I + L         K   +  ++ I   ++ + L + P   FP
Sbjct: 61  TLLEPGSITVSGKKILNICQNLPKD---HNLKIQYINNKLKIVSHNNQYLLATLPIKNFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + K  E   +F ++ + LK+++  T+F+MA +++R +LNG+FF +   +  L AVATDG+
Sbjct: 118 NLKISENQNNFVISQNDLKDVLCATYFSMAIQDLRNFLNGLFFEVR--NQHLYAVATDGY 175

Query: 180 RLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           R+A+ +  +      K  SII+PRK V E++++L+  +  + +++S +   +  ++L  +
Sbjct: 176 RIAICKKPLHNLDKKKYNSIILPRKGVLELIKLLNYSNEVISINISNNYFQIEFKNLIFT 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            ++I  +FP+Y ++I     K++ +N T  ++A+ RV+I+S+   + V +    +KL +T
Sbjct: 236 SKIITEKFPDYTSLILTHISKKMILNTTLFKEALSRVAILSNENFRGVNIKNDQNKLLIT 295

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N    +A E +++ Y    + +  N  Y+++I++ I      D E+    +    S+ 
Sbjct: 296 TSNQHDEEASEIIDIIYTNIKIKMSINASYMIDILNAIQ-----DQEICLSKNDVTHSIQ 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I+       ++      A Y++MP+
Sbjct: 351 IQA------HHYKIAPKAIYIIMPL 369


>gi|312621130|ref|YP_004022743.1| DNA polymerase III subunit beta [Caldicellulosiruptor
           kronotskyensis 2002]
 gi|312201597|gb|ADQ44924.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           kronotskyensis 2002]
          Length = 368

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/389 (23%), Positives = 170/389 (43%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++  + + +              +   VL++A D  +    +  ++++     A 
Sbjct: 1   MRFIVDKEVLQDNISKVIPAAASTKVTSILECVLIEAED-RIIFTTNDMKMQMQTEFEAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GS  + A LL DIV+KL  G      +ENE    V I      F L +    +FP 
Sbjct: 60  ILDRGSALLKAKLLSDIVKKLPSGDVEVIREENE----VKIRSQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +      E  +S   + V++  FA + +E R    G+ F   E+D  +  V  DGHR
Sbjct: 116 MDRKPSESFCEFVASEFVDAVDKVIFATSKDETRPTFTGVLFE-KEDDDFVNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++  VA +    S IVP + + +I +I+  ++   V+VS  E++    I S ++ +
Sbjct: 175 LAICKIKPVA-VEGSFSKIVPAENLDDITKIVDIEEPEKVRVSFFENQATFEIGSTTVIL 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296
            LI G+F +Y++ IP     ++ ++   L   ++R SI+S      IQAV    +     
Sbjct: 234 TLISGKFFDYKSAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + D G+  E +        + + FN KY L+++  +        E+   + S  S 
Sbjct: 294 VKSVSAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D           N  Y+++P+++
Sbjct: 347 SIVQKPDDP---------NYIYLVLPIKM 366


>gi|194335184|ref|YP_002016978.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme
           BU-1]
 gi|194307661|gb|ACF42361.1| DNA polymerase III, beta subunit [Pelodictyon phaeoclathratiforme
           BU-1]
          Length = 374

 Score =  245 bits (625), Expect = 1e-62,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 173/388 (44%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T     + + +G   + I  K   P   +V L    G L + A+  E+ IT      
Sbjct: 1   MKLTSSIRQLQDAIGKVAQAIPAKTIDPRFENVHLSIESGSLTLFATDGELSITAKSDVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQ--ISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
               G+I V A  L D +R + D A   +   +E      ++I+     + +    ES+ 
Sbjct: 61  TSDSGNIGVKARTLQDFLRSMYDTAVTFVIERQEISDHGTLHITTDKGKYKIPCQFESK- 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               E+ Y  S EL ++   +L+++T FA + + +R  + G+ F +      + AV+TDG
Sbjct: 120 QEKHEKTYDISLELETAEFLDLIQKTIFACSVDGMRPAMMGVLFELEGN--TITAVSTDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL     +  + I +   I++P + +  + ++   +  ++ +      +   I ++ + 
Sbjct: 178 HRLVRCRKNYNSAIGEKQKIVIPARVLSILQKLAQHEFITMSIDSDRRFVRFIIGNIVLD 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY  VIP  +DK L ++ + +  +V RV   SS  I  VK+ +    L + 
Sbjct: 238 ASLIIEPYPNYDAVIPVEHDKHLIIDRSMIYDSVRRVGRFSS--IGDVKMVIEGQLLKVM 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A E M   Y    + I FN +++   + ++      D+E+   L S  ++V
Sbjct: 296 AENTNEGEAAQEEMPCLYTGDDITIGFNSRFIEAALAHLD-----DNEIRIELKSPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +       +  +       ++MP+RI
Sbjct: 351 IFKP------HKTEEDDKLIVLVMPVRI 372


>gi|146329375|ref|YP_001208942.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A]
 gi|146232845|gb|ABQ13823.1| DNA polymerase III, beta subunit [Dichelobacter nodosus VCS1703A]
          Length = 414

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 106/431 (24%), Positives = 191/431 (44%), Gaps = 63/431 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK  + +  + + L     I++RK T+ +  H+ L+  +  L +  +  EI +   IP  
Sbjct: 1   MKFEIVKDLLFKRLADLNSIVDRKTTLTILSHIYLKLENQQLTLICTDTEITLKTQIPVI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G+IT+     Y  ++++ DG  I+    N+   + +I  G +   L + P  +FP
Sbjct: 61  NQLSAGAITIPCDKFYQFIQRIDDGTLITCELVNQ---QFHIHAGKTIVKLATLPAKDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +  Y++   L +S+  NL+ +  +A+A ++ R YLNG+  +I ++   L AV+TDGH
Sbjct: 118 IPLDNHYLHHISLDASLFHNLLNKVKYAIANQDGRQYLNGLLLNIIDDGYTLDAVSTDGH 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----------------SKDS------ 217
           RLA A++     IA     IVP KAV E+++ LS                S D       
Sbjct: 178 RLACAQLSFEEAIASNIGFIVPEKAVNELVKHLSLDAANNELLLQKKISQSVDETTRLNE 237

Query: 218 ----------------------SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
                                  + +  SE  + L I S   S RLIDG++P Y+ VIP 
Sbjct: 238 QIDILKELRKQPAREHSQTYARPITLHFSERELSLEIGSYQFSTRLIDGQYPAYRQVIPL 297

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
             +  + +    L  A+ R  ++ + R   V+L      L +T  N +     ES+ +  
Sbjct: 298 QQENPILIERLALLAALRRAKVLLTDRHDGVRLHFVGHNLTLTARNMENETTAESLEIIN 357

Query: 316 NEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
           +    ++I  N  YL++++ ++       + V   L++   +  +  KD+          
Sbjct: 358 SGNLTLEIGLNVNYLIDVLMHLEG-----ETVQLHLENGEQACLLMSKDEP--------- 403

Query: 375 NAFYVLMPMRI 385
           +  +V+MPMRI
Sbjct: 404 DVRHVIMPMRI 414


>gi|300871560|ref|YP_003786433.1| DNA polymerase III subunit beta [Brachyspira pilosicoli 95/1000]
 gi|300689261|gb|ADK31932.1| DNA polymerase III, beta subunit [Brachyspira pilosicoli 95/1000]
          Length = 375

 Score =  244 bits (624), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/389 (24%), Positives = 184/389 (47%), Gaps = 21/389 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    + DI++ +G    ++E K    +  +VL      +L + A+   +     I   
Sbjct: 1   MKFRCLKKDIVKSIGVTENVVEGKVIYNIESNVLFHLAGNMLTLTATDGSVWARSRIMLD 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G++ V A  +  I++++ DG      +ENE    +   +G +   +      +FP
Sbjct: 61  DYEGEGTVAVYAKKISSILKEMPDGMITINVEENEKIN-IESENGKTKHLIIGMKTDDFP 119

Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           S  E    +    L +  L  ++ +T  ++A E  +  L GI F   + D K  AVATDG
Sbjct: 120 SYPESNGDINYIMLPTKELVTMINKTISSIAKEPFKPALRGICFE--KTDSKFLAVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
            R+A+ E +     A   SII+  K + EIL   +  +   VK+ +   +++  +     
Sbjct: 178 RRMAIIEREFEGIDAGSFSIIIEPKVLNEILVTANYDEVEQVKMGVDGQQVYFQVGKYDF 237

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSDKLC 296
              LI+G++PN++ VIP       RVN  +L  A+ R V +++ VR + + L++S + L 
Sbjct: 238 VSSLIEGKYPNFRQVIPKEFAYSFRVNKNDLLDAIRRVVPMINDVRSKRMILTVSEESLK 297

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   N +MG+++E +++ Y      + +NY Y+ ++I  I S+      V F ++  +S 
Sbjct: 298 VKGINQEMGESLEEIDIKYTGEEHSVAYNYTYIQDVIKQIDSEI-----VTFMVNKDSSP 352

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +R  +++         + ++++MPM I
Sbjct: 353 TIVREIERE---------DYYFIIMPMSI 372


>gi|312126264|ref|YP_003991138.1| DNA polymerase III subunit beta [Caldicellulosiruptor
           hydrothermalis 108]
 gi|311776283|gb|ADQ05769.1| DNA polymerase III, beta subunit [Caldicellulosiruptor
           hydrothermalis 108]
          Length = 368

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/389 (22%), Positives = 172/389 (44%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V++  + + +              +   VL++A D  +    +  ++++     A 
Sbjct: 1   MRFVVDKEVLQDNISKVIPAAASTKVTSILECVLIEAEDS-IVFTTNDMKMQMQTEFEAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+  V A L  DIV+KL  G ++   +E+   +EV I      F L +    +FP 
Sbjct: 60  ILERGAALVKAKLFSDIVKKLPSG-EVEVIRED---SEVKIRSQKIEFRLPTLDPLDFPK 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             ++      E  +S   + V++  FA + +E R    G+ F   E+D  +  V  DGHR
Sbjct: 116 MDKKPSESFCEFVASDFVDGVDKVIFATSKDETRPTFTGVLFEKEEDDF-VNLVGMDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMSV 239
           LA+ ++  +A +    S IVP + + +I +++  ++   V+VS  E++    I S ++ +
Sbjct: 175 LAICKIKPIA-VEGNFSKIVPAENLDDITKVVDIEEAEKVRVSFFENQATFEIGSTTVIL 233

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSSDKLC 296
            LI G+F +Y+  IP     ++ ++   L   ++R SI+S      IQAV    +     
Sbjct: 234 TLIAGKFFDYKGAIPTEYSTKISISSDVLESTLERASIVSKDEKTNIQAVIFETNGMMFT 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   + D G+  E +        + + FN KY L+++  +        E+   + S  S 
Sbjct: 294 VKSMSAD-GRYEEDVLCSVEGKDIRVGFNVKYFLDVLKELDG------EINLFITSQTSP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D           N  Y+++P+++
Sbjct: 347 SIVQKPDDP---------NYIYLVLPIKM 366


>gi|312878754|ref|ZP_07738554.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260]
 gi|310782045|gb|EFQ22443.1| DNA polymerase III, beta subunit [Aminomonas paucivorans DSM 12260]
          Length = 382

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 86/391 (21%), Positives = 169/391 (43%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++E+S   +    A R +   + + V   +L++A++  +E+ A+  +  +T      
Sbjct: 1   MKLSIEKSQFTKSWSLAERSVGTSSALNVLSGILVRASESTVELLATDLKTSVTCRARGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+V G        + D+ RK  +G      +E     +  +  G S +   ++   EFP
Sbjct: 61  RVEVPGEAVFPVKSVGDLFRKAPEGQFSVSVEEG----KATLLAGRSRYRFSTYGVQEFP 116

Query: 120 STKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                E    F    A  + + L E T  A   EE   +L+  +F    E+  L  V+TD
Sbjct: 117 RLPSAEQGTPFGTTTAQQLFEALSEGTLAASTGEEYPQFLSCAYFQ--PENGFLRVVSTD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235
             RLA +   +    A+ P I++P K + E+ RIL     ++ +KV   +++ + +   +
Sbjct: 175 SRRLAYSRFAV-GDAAEGPGILLPMKGIKELERILGSLDGETPLKVRFDDAQAYFSTSEV 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DK 294
             +VR ++ +FP Y+ ++P S         ++L +A++R+ ++     + V L LS    
Sbjct: 234 EFAVRRVEAKFPQYERILPTSRTTWFEAGRSSLVEALERIDVVVRDFNRMVVLQLSPGGS 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             +    PD G+A+E +       P+ I FN ++ L+ +  +      D  V    +   
Sbjct: 294 CTLRGRAPDFGEAVEEVEGSIEGEPLRIAFNVRFFLDGLKALK-----DQGVRLDFNGPE 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + IR    DS            ++ P+ +
Sbjct: 349 GHLAIRRPGSDS---------YLCLVAPIAL 370


>gi|317496619|ref|ZP_07954966.1| DNA polymerase III [Gemella moribillum M424]
 gi|316913284|gb|EFV34783.1| DNA polymerase III [Gemella moribillum M424]
          Length = 379

 Score =  244 bits (623), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 95/396 (23%), Positives = 183/396 (46%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+E+S+ L  L H  R+I   +   +   + L+ N+ +L +KAS   + +  +I A 
Sbjct: 1   MKFTIEKSNFLAGLNHVARVIAPNSLFEILKGIKLELNENVLVLKASDSLVSVEFSIDAY 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  G + + +    +I+RK           +N     + +  G S F ++ 
Sbjct: 61  DDDKEIITIEEEGQVVLPSRNFIEIIRKAPTNLIEIETIDNN----ILVKSGKSEFNVKG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +  +E+P        +S  L   V  ++++ T F  A  + R  L G+ F +N +   L 
Sbjct: 117 YDANEYPEFPVISKEHSLTLDGKVFNDIIKETVFCTAPNDQRPILEGVNFTLNNK--VLT 174

Query: 173 AVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A ATD +RL+  ++ +      K  ++I+PRKA+    R++      V++    +RI L 
Sbjct: 175 ATATDSYRLSRRQITLEEVADDKEFNLIIPRKALTYFQRMIEEGKDQVEIFYENNRIVLY 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            +++  +V LI G +PN   +IP   +     N   L  AVDRVS+MS   +   +KL +
Sbjct: 235 YQNVVYTVLLISGNYPNTNKLIPTVFECTFVSNGRELFDAVDRVSLMSREDKDDIIKLIV 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
             + L ++  + D+G A+E + V     E   +I  + +YL E I  I+S     +E++ 
Sbjct: 295 KDNMLEISSQSKDLGSAVEEIKVESTLEEDVFEISVSGRYLKEAIYAIAS-----EEIIV 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     ++  ++  D           +   +++P+R
Sbjct: 350 KFSGELTAFIVQPAD--------YHRDIIELILPVR 377


>gi|282859399|ref|ZP_06268506.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010]
 gi|282587833|gb|EFB93031.1| DNA polymerase III, beta subunit [Prevotella bivia JCVIHMP010]
          Length = 374

 Score =  243 bits (622), Expect = 2e-62,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 171/386 (44%), Gaps = 19/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +  S +   L    ++I  KN++ +    L +  +  L I AS  E  +   I   
Sbjct: 1   MRFNLSSSVLSSKLQTLSKVIASKNSLAILDSFLFEIKNNQLTITASDSENTMHSTINLD 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +   S  V+   + D V++L +         +E    +   +G  NF +Q  P  EFP
Sbjct: 61  SAEGETSFAVNNRTIIDAVKELPEQPLSLDVNMDEQKIYITYQNGSYNFPIQ--PADEFP 118

Query: 120 STKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +       +  + + +L   + R+ FA A +E+R  +NG++F ++ +   L  VA+DG
Sbjct: 119 KVQPIAAGATTITIDADILAENINRSLFATAQDELRPVMNGLYFDLSADS--LAIVASDG 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V       +     + I+P+K    +  +L+     V +   +    ++     +S
Sbjct: 177 HKL-VRNKIFTIKSDTPSAFILPKKPANLLKNVLTKDGGDVVIRYDQRSAEISYAEGYLS 235

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G +PNY +VIP +N  ++ ++  +L  A+ RVS  +S   Q ++  + + +L + 
Sbjct: 236 CRLIEGRYPNYNSVIPETNPNQITIDRRSLIGAIRRVSPFASESSQLIRFHIENGQLTLN 295

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y    M I F    +LEI++N+       D++  +L   + + 
Sbjct: 296 AEDIDFSTSAKESVICDYAGNAMSIGFKGASMLEILNNLEG-----DDITIQLADPSRAG 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 351 VIVP------GKQPENEDVLMLIMPM 370


>gi|118799|sp|P21174|DPO3B_MICLU RecName: Full=DNA polymerase III subunit beta
 gi|149849|gb|AAA25316.1| DNA polymerase III beta subunit (dnaN) [Micrococcus luteus]
          Length = 310

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 70/318 (22%), Positives = 138/318 (43%), Gaps = 10/318 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  + + +  A R +  +  +PV   +L+ A  G++ I +   E      I A 
Sbjct: 1   MKFTVERDILTDAVSWAARSLSPRPPVPVLSGLLITAEAGVVSIASFDYETSARLEIEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + VS  LL DIVR L              G +V ++   S F L + P  ++P+
Sbjct: 61  VETAGQVLVSGRLLNDIVRSLPQAQVTVELD----GGKVLVTCRSSRFSLATMPVGDYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E        +  +   + V +   A + ++    L  +   I  +   +  +ATD +R
Sbjct: 117 LPELPAPAG-TVDGAAFAHAVAQVTVAASKDDTLPILTAVKVEIEGD--TITFLATDRYR 173

Query: 181 LAVAEVDIVAQIAKMP-SIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMS 238
           LA+ E+        +  S+++  + + E+ + L S  D  + +  +   +         +
Sbjct: 174 LAMKEIRWTPADPSISTSLLIKARTLTEVAKSLGSGGDLEILLGQTADLVGFASGGRRTT 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             L+DGE+P  +++ P S+  +  V+   L +A  RV++++  R  A+++  +  ++ + 
Sbjct: 234 SVLVDGEYPKIRSLFPESSPIQAVVDTAALVEASRRVALVA-ERNTALRMVFTEGQVTLD 292

Query: 299 VDNPDMGKAIESMNVYYN 316
               D   A ES+     
Sbjct: 293 AGTGDDASANESVPCTLE 310


>gi|158317615|ref|YP_001510123.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
 gi|158113020|gb|ABW15217.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
          Length = 404

 Score =  243 bits (621), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 86/416 (20%), Positives = 167/416 (40%), Gaps = 54/416 (12%)

Query: 6   ERSDILELLGHACRIIERKNTI---PVSCHVLLQAN------------------------ 38
           ER  + +  G A R +  K T     V   +LL+A                         
Sbjct: 2   ERDVLADATGWAARYVP-KPTAGAQQVLTGLLLEATMPTPDQAGDQAGDQATDQTTEQAR 60

Query: 39  ----DGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94
                  L + A   E+     + A V   G + V   LL D+VR L D   +    E  
Sbjct: 61  TQAPGPALTVSAFDSEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVVVEATE-- 118

Query: 95  LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
             T V I  G + F + +    ++P           E+ +      V +   A   ++  
Sbjct: 119 --TRVIIECGAARFRIPALAAEDYPVLPAFPPPVG-EVDTLGFAAAVAQVAPAAGRDDAL 175

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILS 213
             L  +   I    L +  VATD +RLAV  +     + +  ++  VP + + ++ ++ +
Sbjct: 176 PVLTAVRLEIARGGLTM--VATDRYRLAVRTIPWQPTVDEPDAVAHVPARLLADMAKLPT 233

Query: 214 SKD-SSVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           +    ++ + + E+   R  L++      VRL++G FPNY+ ++P +++  +      L 
Sbjct: 234 TASRVALGMGVDEAGVLRFGLSVNGRQTIVRLLEGSFPNYRRLLPETSELTVTAPTAVLA 293

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
            AV RV++++  R   ++ + S+ ++     +    +A E + V Y+   + + FN  +L
Sbjct: 294 AAVRRVALVA-TRTAPLRFTFSAGQVVAEAGDGGGAQASELVPVEYDGPELSVLFNPAFL 352

Query: 330 LEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           L+ +  +  DE +        + +S+    + GKD           +  Y+LMP+R
Sbjct: 353 LDGLAAVEGDEAIIGFATADPEIASSKPAVLTGKDD--------GEDYRYLLMPIR 400


>gi|329769244|ref|ZP_08260662.1| DNA polymerase III [Gemella sanguinis M325]
 gi|328839335|gb|EGF88916.1| DNA polymerase III [Gemella sanguinis M325]
          Length = 379

 Score =  243 bits (620), Expect = 4e-62,   Method: Composition-based stats.
 Identities = 93/396 (23%), Positives = 180/396 (45%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK T+E+SD LE L H  R+I   +   +   + L+ +   L +KAS   + +   I A 
Sbjct: 1   MKFTIEKSDFLEGLNHVARVIAPNSLFEILKGIKLELSSNNLVLKASDSLVSVEFIIDAY 60

Query: 60  -------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  G + + +    +I+RK           +    + + I  G S F ++ 
Sbjct: 61  KDDKEIITIEEEGQVVLPSRNFIEIIRKAPTNLIEFESTD----SFIKIHSGKSEFNIKG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +   E+P         S +L ++V  +++  T F  A  + R  L G+ F +  +   L 
Sbjct: 117 YDAMEYPEFPVISRENSLKLEATVFNDIIRETVFCTAPNDQRPILEGVNFSLKNK--ILT 174

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A ATD +RL+  +V +      K  ++I+PRKA+    R++ +    V++    +RI L 
Sbjct: 175 ATATDSYRLSRRQVVLNDEDAEKEFNLIIPRKALTYFQRMIETGGDEVEIFYENNRIVLY 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            +++  +V LI G +PN + +IP   +     N      AVDR+S+MS   +   +KL +
Sbjct: 235 YQNVVYTVLLISGNYPNTEKLIPTMFECSFTANSREFFNAVDRISLMSREDKDDIIKLVV 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +   L ++    D+G A+E + V     +   +I  + KYL + +  I+S     +E+V 
Sbjct: 295 TEGNLEISSQAKDLGSAVEELQVNSKLEDDSFEISVSGKYLKDAVSAIAS-----EEIVI 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     ++  ++          D   +   +++P+R
Sbjct: 350 KFSGELTAFIVQP--------SDYHRDIIELILPVR 377


>gi|269977743|ref|ZP_06184703.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1]
 gi|269934047|gb|EEZ90621.1| DNA polymerase III, beta subunit [Mobiluncus mulieris 28-1]
          Length = 388

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 78/391 (19%), Positives = 167/391 (42%), Gaps = 22/391 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PAS 60
           ++ + R  + E +  + R I ++  +PV   V + A    +E  +    +     + P  
Sbjct: 9   ELILNREVLAEAVAWSSRTISQRPAVPVMAGVHIAATSAGVEFASYDYNVSARVTVEPLE 68

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++ V   LL +  R L +  +IS          ++I+ G  +  L   PE ++P 
Sbjct: 69  LITEGTVVVDGKLLSETARALPN--KISEVSFKTEDNYLHITCGSFHQQLLVMPEEDYPQ 126

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +   V      + V  + + +   A + +E    L GI   I  E  KLC +ATD +R
Sbjct: 127 LPQLPQVVGQV-DAEVFSHSISQVSIAASRDETLPLLTGISLEIRPE--KLCVLATDRYR 183

Query: 181 LAVAEVDIVAQIAKM-PSIIVPRKAVGEILRILSSKDSSVKVSLSESR-----IHLNIES 234
           +A+ E+   A   ++   ++V  K + +  + ++S   S+ +++         + L+   
Sbjct: 184 MALKEIPWQATNPQINQDLVVKAKNIADAAKNIASS-GSISLAVDGEDESSALVGLSAGG 242

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSD 293
              + ++ DG +P+ + + P   +    V  ++   A  RV+I+S ++  Q + LS +  
Sbjct: 243 RLFTSQVNDGNYPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQITLSFTQG 302

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L     +     A +++ V  N   + + FN + L+E +  +      +  V       
Sbjct: 303 TLEFRAGSGGENTATDAIPVQLNGADISVSFNSRMLIEGLSVVD-----EPYVRLSFKDE 357

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              V I G+ ++     D+ ++  Y++MP+R
Sbjct: 358 TKPVIITGQKEE---TGDDSLDFQYLIMPIR 385



 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 31/182 (17%), Positives = 70/182 (38%), Gaps = 13/182 (7%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
            +    L   VL   V  +   ++       + G+  HI      +   + D +  A   
Sbjct: 6   GIVELILNREVLAEAVAWSSRTISQRPAVPVMAGV--HIAATSAGVEFASYDYNVSARVT 63

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI-DG 244
           V+   ++    +++V  K + E  R L +K S V     ++ +H+   S    + ++ + 
Sbjct: 64  VE-PLELITEGTVVVDGKLLSETARALPNKISEVSFKTEDNYLHITCGSFHQQLLVMPEE 122

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-----QAVKLSLSSDKLCMTV 299
           ++P     +P       +V+      ++ +VSI +S          + L +  +KLC+  
Sbjct: 123 DYPQ----LPQLPQVVGQVDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPEKLCVLA 178

Query: 300 DN 301
            +
Sbjct: 179 TD 180


>gi|256545951|ref|ZP_05473306.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC
           51170]
 gi|256398373|gb|EEU11995.1| DNA polymerase III, beta subunit [Anaerococcus vaginalis ATCC
           51170]
          Length = 375

 Score =  243 bits (620), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/387 (23%), Positives = 178/387 (45%), Gaps = 21/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++ D+   +  A + + RK  I +   +  +A +  L + +S  EI I       
Sbjct: 6   MKIEIQQKDLSNKISIALKAVSRKTNIQIHELIYFEAKNDTLTLTSSDGEISIVTKANCK 65

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + ++A+++ +IVRKL D   I    E+   +++ I    SNF + +F   E  +
Sbjct: 66  VVQEGEMAINANIIANIVRKLPD-ELIKIELED---SKIKIKCNGSNFNILAFDYYEKKN 121

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 V   E+ +  LK  + +T FA + +E +  L GI F +   D  L  VA DG+R
Sbjct: 122 F-SIPSVDYLEIQNDKLKRSISQTEFATSLDETKLALTGILFELK--DGYLNFVALDGYR 178

Query: 181 LAVAEVDIV-AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ ++ +          +I+PRK++ E  RI+   +   K+   +  I       +M  
Sbjct: 179 VALKKLKLSYPSSMDKARLIIPRKSISEWTRIIDD-EKITKIYKDDKDIIFESGDTTMYC 237

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMT 298
           ++ID  + +Y N+I   +   L V+   L  +++R  ++++  R   +K+++  DK  + 
Sbjct: 238 KVIDKNYIDYTNIISDISTTSLVVDRQELINSLERAQLLNNTQRANLIKINIEDDKCLIE 297

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N ++G   E + +      + I FN +YL+E +    +       +   L SS +   
Sbjct: 298 S-NSEIGDLKEVLQIQKEGDDVKIAFNARYLIEGVKACDTQT-----IRMHLKSSLNPCL 351

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           I   +     +K +     Y+ +P+R+
Sbjct: 352 IYPNE-----SKYDDEEFTYLALPVRL 373


>gi|320332620|ref|YP_004169331.1| DNA polymerase III subunit beta [Deinococcus maricopensis DSM
           21211]
 gi|319753909|gb|ADV65666.1| DNA polymerase III, beta subunit [Deinococcus maricopensis DSM
           21211]
          Length = 360

 Score =  242 bits (619), Expect = 5e-62,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 176/388 (45%), Gaps = 31/388 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V +  + E +G   RII  +N+ P+   + + A +  L +  +  EI+++  + A 
Sbjct: 1   MRAQVSKKALNEGVGMLERIIPARNSNPLLTALKVDATERGLTLSGTNLEIDLSCFVAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+   +  V AHL   IVR L         +    G E+ +  G S F LQ+   S +P 
Sbjct: 61  VNEQAAFVVPAHLFAQIVRNLGG----ELVELEHSGNELAVRAGGSEFKLQTGDLSAYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               ++V +   A+ + K  +    +A + E  +    GI         ++  +A+DG R
Sbjct: 117 LSFPDHVDTTLDAAELAK-ALSSVRYAASNEAFQAVFRGIKLEYRGGQARV--IASDGFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ +    A      ++I+P ++  E++R+L  +D  V+++  E  + +  + + M+V+
Sbjct: 174 LALRDF---AAHGDGQNLILPARSADELVRVL--RDGEVRLAYGEGALGVTTDRVRMNVK 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           L+DG+FP+Y+ VIP     ++R+    L++AV RV++++       V+  +S   L +  
Sbjct: 229 LMDGDFPDYERVIPRDIKLQVRLQAAALKEAVSRVAVLADKNANNRVEFLVSEGTLRL-A 287

Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
              D G+A +++ V        M + FN KY+L+ +  I                S S  
Sbjct: 288 TEGDYGRAQDTLTVEQAGDEPAMSLGFNAKYVLDALGPIDGA------AELLFSGSTSPA 341

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             R  +               V++P+R+
Sbjct: 342 MFRAVE---------GGGYLAVVVPLRV 360


>gi|329768085|ref|ZP_08259594.1| DNA polymerase III [Gemella haemolysans M341]
 gi|328838240|gb|EGF87852.1| DNA polymerase III [Gemella haemolysans M341]
          Length = 379

 Score =  242 bits (619), Expect = 6e-62,   Method: Composition-based stats.
 Identities = 86/396 (21%), Positives = 181/396 (45%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+ +S+ L+ L H  R+I   +   +   + ++     L +KAS   + +  +I   
Sbjct: 1   MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDQLILKASDSLVSVEYSINSY 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  G + + +    +I+RK           EN     + +  G S F ++ 
Sbjct: 61  EDDKEIITIEEEGQVVLPSRNFIEIIRKAPTDLIEIETIENN----ILVKSGKSEFNVKG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +  +++P         S +L +++  ++++ T F  A  + R  L G+ F ++ +   L 
Sbjct: 117 YDANDYPEFPVISKENSLKLEANIFNDIIKETVFCTAPNDQRPILEGVNFSLSNK--ILT 174

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A ATD +RL+  +V +      K  ++I+PRKA+    R++ +    V++    +RI L 
Sbjct: 175 ATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLY 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            +++  +V LI G +PN   +IP   +     N      AVDRV++MS   +   +KL +
Sbjct: 235 YQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFNAVDRVALMSREDKDDIIKLVV 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           + + L ++  + D+G A+E + V     +   +I  + KYL + +       V  +E++ 
Sbjct: 295 TDNLLEVSSQSKDLGSAVEELKVSSTLEDDKFEISVSGKYLKDAVSA-----VAAEEIIV 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     ++  I+  D   +  +        +++P+R
Sbjct: 350 KFSGELTAFIIQPSDYHREIIE--------LILPVR 377


>gi|291288759|ref|YP_003505575.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
 gi|290885919|gb|ADD69619.1| DNA polymerase III, beta subunit [Denitrovibrio acetiphilus DSM
           12809]
          Length = 368

 Score =  242 bits (618), Expect = 7e-62,   Method: Composition-based stats.
 Identities = 95/386 (24%), Positives = 175/386 (45%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+    + +I   +  A      KN   V  ++L+ A    + ++A+  ++  +G IP S
Sbjct: 1   MRFKAVKDEIYPFIQFANSFTSPKNLNTVLQNILIDAEPDGVTLRATDMQVGFSGKIPVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G+ TVS   L DI++++ DG+ I F  +   G+++NI  G S+F L +     FP+
Sbjct: 61  VEETGTATVSGKKLLDIIKEIPDGSVIDFSFD---GSKINIDSGKSSFKLSTISHEIFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    Y  ++ SS+L NL+++T F ++T+  +    G    +  +  KL   A D  R
Sbjct: 118 MAEITPEYYLKIKSSMLYNLLKKTSFCISTDASKIEYTGSHMAVYGD--KLEISAADFQR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A + V    + +    I +PRK V E+L+IL  +D  V++     +I   I  + +  +
Sbjct: 176 IATSSVKFDEEYSNEFMINIPRKTVMELLKIL-DEDEYVEIETDRKQIIFTIGQVKIFSK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+    +   +       + ++N       + RVS ++S     V LS       +   
Sbjct: 235 LIEKYIKSITKLFANDLPLQAKLNRAEFLDVIKRVSAITSEVTHGVVLSFKPGTFTVYSL 294

Query: 301 NPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             + G   ES+ +  YN  P+DI FN K++ E+I NI +D          +    +   I
Sbjct: 295 ETEYGTGHESIDDFEYNGEPLDIIFNAKHVAEMISNIDTDYFY-----LHMVGERNPAVI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  +            Y+++P+ I
Sbjct: 350 IPETGE----------YKYLVVPISI 365


>gi|194332855|ref|YP_002014715.1| DNA polymerase III subunit beta [Prosthecochloris aestuarii DSM
           271]
 gi|194310673|gb|ACF45068.1| DNA polymerase III, beta subunit [Prosthecochloris aestuarii DSM
           271]
          Length = 375

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 81/388 (20%), Positives = 181/388 (46%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +       + +    + I  K   P   ++ L  ++G L + A+  E+ IT      
Sbjct: 2   MKFSTSIKHFQDAVNKVTQAIPAKALDPRYENLHLFLDNGSLTLYATDGELSITATTEVE 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESEF 118
               GS  + A  + + +R + D +     +  +L  +  ++IS     + +    ES+ 
Sbjct: 62  STDQGSFGMKARTILEFLRSMYDTSVTFNIERQQLSDQGLIDISTDKGRYRIPCSFESK- 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              K++++     L S+ L +++++T FA + + +R  + G+   +  E+ K+ AV+TDG
Sbjct: 121 QEKKDKDFDLELTLTSADLLDIIQKTIFACSVDGMRPAMMGVLLEL--ENNKITAVSTDG 178

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL        + +     I++P + +  + ++      ++ +  + + +     +L + 
Sbjct: 179 HRLVRCIKTCESGVETKKRIVIPARVLSILQKLTQDDTVTLSIDTTNNSVRFVFPNLILD 238

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI  ++PNY+ VIP  N+K + +N + L  +V RV   SS  I  +++S++   + + 
Sbjct: 239 AALIVEQYPNYEAVIPLDNEKIVSINRSTLYDSVRRVGKFSS--IGDIRISVAESVMTLM 296

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A E +   Y+   + I FN K++   + +I +     + +   L S  ++V
Sbjct: 297 AENTNEGESAQEEIACVYSGEDLVIGFNSKFIEAALGHIET-----ETITMELSSPTTAV 351

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++ + ++ +       N   ++MP+RI
Sbjct: 352 ILKPEKEEEQQ------NLIILVMPVRI 373


>gi|15805043|ref|NP_293727.1| DNA polymerase III subunit beta [Deinococcus radiodurans R1]
 gi|6457660|gb|AAF09595.1|AE001864_1 DNA polymerase III, beta subunit [Deinococcus radiodurans R1]
          Length = 393

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 86/364 (23%), Positives = 170/364 (46%), Gaps = 22/364 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V +  + E LG   R+I  +++ P+   + ++ ++G L +  +  EI+++  +PA 
Sbjct: 2   MKANVTKKTLNEGLGLLERVIPSRSSNPLLTALKVETSEGGLTLSGTNLEIDLSCFVPAE 61

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    +  V AHL   IVR L  G  +        G E+++  G S+F LQ+     +P 
Sbjct: 62  VQQPENFVVPAHLFAQIVRNL-GGELVELEL---SGQELSVRSGGSDFKLQTGDIEAYPP 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L    L        +A + E  +    GI    + E  ++  VA+DG+R
Sbjct: 118 L-SFPAQADVSLDGGELSRAFSSVRYAASNEAFQAVFRGIKLEHHGESARV--VASDGYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ +           ++I+P ++V E++R+L  KD   + +  +  + +  + + M+++
Sbjct: 175 VAIRDFPA---SGDGKNLIIPARSVDELIRVL--KDGEARFTYGDGMLTVTTDRVKMNLK 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           L+DG+FP+Y+ VIP     ++ +  T L++AV+RV++++       V+  +S   L +  
Sbjct: 230 LLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGTLRLAA 289

Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  D G+A ++++V        M + FN +++L+ +  I  D             S S  
Sbjct: 290 EG-DYGRAQDTLSVTQGGTEQAMSLAFNARHVLDALGPIDGD------AELLFSGSTSPA 342

Query: 358 FIRG 361
             R 
Sbjct: 343 IFRA 346


>gi|323143413|ref|ZP_08078098.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066]
 gi|322416818|gb|EFY07467.1| DNA polymerase III, beta subunit [Succinatimonas hippei YIT 12066]
          Length = 376

 Score =  242 bits (617), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 100/387 (25%), Positives = 193/387 (49%), Gaps = 23/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIP-----VSCHVLLQANDGLLEIKASGPEIEITG 55
           MK T+     ++ L     +       P     ++ +VL+   +  L  K +   IE++ 
Sbjct: 1   MKFTLPLVSFIKHLSQVSGVAGA----PGGKDDITQNVLISIKNNELTFKCTVYSIEMSV 56

Query: 56  AIP--ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            IP  A V+  G+ TV+A  L D  + L D + +  F  +E    + +S G + F +++ 
Sbjct: 57  VIPGVADVESEGATTVNAAKLRDSCKNL-DQSALVTFDYDESNEVLLVSSGTAQFQIRTR 115

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              EFP+ + E+      L  + LK +++++ F ++ E+ R YL G+ F ++ E++ +  
Sbjct: 116 NVLEFPTFEHEDVEQRIVLKQNQLKAIIDKSIFCISNEDFREYLKGMRFEVDGENVSVF- 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
             +DGHR+AV E  +   +A+     + R+   E+ +IL   D  V+++ +++ I  +  
Sbjct: 175 -TSDGHRMAVIETTLDVPLAQPLGSNLTRRCAAELTKILKDSDEPVELAFTKNSISTSCN 233

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             +++ +L+   +PN + VIP S D  + V    L+ A+ RV+++SS R+ AV L  + D
Sbjct: 234 GYTLTSKLLICGYPNVRAVIPKSIDVSVEVPRAELKNAISRVNVLSSKRVNAVNLVFADD 293

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L +  +N +   A ES+N+ YN  P+D+  N  Y++E+++ IS+     + V F   + 
Sbjct: 294 RLNLKTENSEHEVATESLNISYNLHPIDMSLNAGYVMEVLNAIST-----ENVRFCFANP 348

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVL 380
             S  I     D     +  V   Y++
Sbjct: 349 IVSTLIEPCSND----YEYGVRTRYII 371


>gi|27262250|gb|AAN87406.1| DNA polymerase III, beta chain [Heliobacillus mobilis]
          Length = 298

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 74/297 (24%), Positives = 140/297 (47%), Gaps = 7/297 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +  R ++LE +    R +  + TIP+   + ++A D +L + A+  E+ I   IP  
Sbjct: 1   MEFSCSRGELLEAVNAVSRAVSSRATIPILSGIYMEALDDVLRLVATDMELGIEYTIPVK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  V+A +  ++ R+L +G    +        +V      S   L +    EFP 
Sbjct: 61  TVQTGSTVVNARIFNEMARRLPEGPITFYISGETPALKVRYHG--SELTLNTMNPQEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L     K +     FA +T+E R +  G+ + I+ E+++   VATD HR
Sbjct: 119 LPAILDGDHLILTQGQFKEMTRLVCFAASTDESRPWFTGVLWDISPEEVRW--VATDTHR 176

Query: 181 LAVAEVDIVAQ-IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+         I +   +I+  K + ++ R+LS  ++S++++++ S+  L  + + + +
Sbjct: 177 LALLSGQATESVIQQNRQVILHAKTLSDVARLLSDDEASLQITITRSQALLETDRMRVIL 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS--SVRIQAVKLSLSSDK 294
           R+I+G++P YQ VIP      + V+   L  +VDR S+ +        +KLS   + 
Sbjct: 237 RIIEGQYPKYQQVIPRDYKTRMTVSVKALADSVDRASLAAIGKEGSNIIKLSSDKNT 293


>gi|218961814|ref|YP_001741589.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus
           Cloacamonas acidaminovorans]
 gi|167730471|emb|CAO81383.1| putative DNA polymerase III, beta chain (dnaN-like) [Candidatus
           Cloacamonas acidaminovorans]
          Length = 389

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 91/405 (22%), Positives = 182/405 (44%), Gaps = 38/405 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           M++ +E+ D+L  + H   I+  KNT P+  + L++    +  + I  +  E+ +    P
Sbjct: 1   MRLAIEKKDLLARIQHLVSIVPTKNTSPILNNYLIEVSEENNKVRISTTDLELMVVVEFP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A+V   G++ VSAH   +I+  + DG    +  ++     + I  G  +F L     + F
Sbjct: 61  AAVSEGGTVAVSAHHFNEIINYMPDGVINLWRNDDL----LMIQCGKVDFNLLIADHTLF 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E +      + + +   ++ +T+FA++T+  R  LNG+ + I  +       ATDG
Sbjct: 117 PVIPEPKLNNPITIDAELFSRMISKTYFAVSTDVNRPVLNGVCWKIYPDHH--IMAATDG 174

Query: 179 HRLAVAEVD------------------IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
            ++A  ++                      Q       ++P K +  + +I + +   +K
Sbjct: 175 RKVAEIKILNSSLLSSLEPNDNPEMNIFTEQNQYYVEKVIPVKTLLFLQKIFNDEVKELK 234

Query: 221 VSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS 280
           V L  +RI        +S ++++ +FP+YQ   P     +  ++   L  A+ RV++++ 
Sbjct: 235 VGLEHNRILFLYGEYFISSQVLEHKFPDYQKAFPAELPNKFVIDRQALITAIKRVALVAP 294

Query: 281 VRIQAVKLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSD 339
                +   L SD+  +   N D G+A E+M +  +      I FNYKY+L I++ I ++
Sbjct: 295 DDNLRIHFDLDSDRFEVNTSNRDTGEAKENMDDFTFAGSSTGISFNYKYMLSILEAIDTE 354

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     VV +L +S  ++ I  +               ++LMP+R
Sbjct: 355 K-----VVIKLGTSKDAMMIYNE------TPLPDQEITFLLMPLR 388


>gi|328949542|ref|YP_004366877.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM
           14884]
 gi|328449866|gb|AEB10767.1| DNA polymerase III, beta subunit [Marinithermus hydrothermalis DSM
           14884]
          Length = 361

 Score =  241 bits (616), Expect = 1e-61,   Method: Composition-based stats.
 Identities = 93/386 (24%), Positives = 175/386 (45%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +  + E +G   RII  +++ PV   + LQ +   L ++ +  E+++   + A 
Sbjct: 1   MRVRIPKRTLAEAIGILERIIPNRSSNPVITQLFLQGHSSGLTLRGTNGEVDLELTVTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +   +  V AHL   IVR L  G  +    +N+   E+ +  G     L +     +P 
Sbjct: 61  TEGADAFLVPAHLFGQIVRGLP-GELVELSADNQ---ELEVESGSFRTRLATATPEGYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      LA+  L   +    +A +TEE R    G+    +   L+  AVA+DG R
Sbjct: 117 L-TFDAPMEARLAAPELARALAHVRYAASTEEYRAIFRGVQLEFHPGALR--AVASDGFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA    D+  +   +  ++VP ++  EI+R+L   +  V V ++E ++ L  E+  MSV 
Sbjct: 174 LARY--DLATRTEFVKKLVVPARSADEIIRVLKDTEGEVAVGVTEGKLVLASEAFRMSVA 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GEFP+Y+ VIP     E  ++   LR+++ RV +++      + L    D L +  +
Sbjct: 232 LMEGEFPDYERVIPQQFVGEAVLSAEALRESIKRVKVLADKNNHRIDLFFQGDALEVVAE 291

Query: 301 NPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             D G+  E ++V     P + + +N +YL + +  +        +V  RL    S   I
Sbjct: 292 G-DYGRGSERLSVQREGEPQLVLAYNAEYLGDALSPVEG------QVRIRLSGPTSPTVI 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +               V++P+R+
Sbjct: 345 EAVEDP---------GYLAVVVPLRV 361


>gi|289450447|ref|YP_003474444.1| DNA polymerase III subunit beta [Clostridiales genomosp. BVAB3 str.
           UPII9-5]
 gi|289184994|gb|ADC91419.1| DNA polymerase III, beta subunit [Clostridiales genomosp. BVAB3
           str. UPII9-5]
          Length = 367

 Score =  241 bits (615), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 180/388 (46%), Gaps = 26/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T +++ +++ + +  + I  + T+P+   +L  A +  L +     E  I   +PA 
Sbjct: 1   MKFTCDKNLLIDAITNVQKAISTRTTMPILEGILFDAENN-LILTGYDMETAIKYTMPAK 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +++ ++ +IV+K      ISF  EN     V I  G S F L      ++P+
Sbjct: 60  IEEQGKVVLNSKIIGEIVKK-AAAETISFDVENNYS--VLIQSGLSKFKLHGLSAEDYPA 116

Query: 121 TKEEEYVY--SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             E +        L  + L +L++++ F+++ +E R  LNG F    +E+  +  V  DG
Sbjct: 117 LVENDSNVKQEITLPQNELYSLIKKSIFSVSLDEKRPNLNGCFL--KKENKVIEMVGIDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            R++VA+     Q     S I+P K +  +L +L     ++ +S   +++  +    +M 
Sbjct: 175 FRVSVADFYDANQDEVDISFIIPHKTLRNLLSMLEES-GNILISKKSNQLIFDFGRKTMI 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ--AVKLSLSSDKLC 296
            R+I   + NY+N+ P  +   + +   +L  +++R  +MSS       V +   S+ + 
Sbjct: 234 SRIISENYINYRNIFPEQSITNIELKTKDLLGSIERSILMSSPDDHRYPVTIKCDSETME 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  N + G   E ++V +    +D+  N  YL++ +  I      D+++    + S+  
Sbjct: 294 ISSIN-NRGDFHEIIDVTFKGKAVDVDINPYYLIDALKVID-----DEKIKVSFNESSGP 347

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V I            N  N  ++++P+R
Sbjct: 348 VIIEPI---------NNKNFMFLILPLR 366


>gi|313892141|ref|ZP_07825734.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII
           345-E]
 gi|313119279|gb|EFR42478.1| DNA polymerase III, beta subunit [Dialister microaerophilus UPII
           345-E]
          Length = 369

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 168/386 (43%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ D++  L    R  + K T   +    + A D  +E +A+   + I     A 
Sbjct: 1   MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   ++A  L   +R +         K+NE  T V    G       +    +FP 
Sbjct: 61  IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQYIAKFPTRLHDDFPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L    L  +     ++ A ++ +    GI F I ++  K    AT+ HR
Sbjct: 119 ILNMQNTSKAILKCKDLVEMTNLVQYSAANDKQKPLFTGILFEIKDK--KFIMAATNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV E+++         IIVP   + +++++L   +D  V+++ +++ +     +     
Sbjct: 177 LAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFTFNNTYFIT 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
            LI+GE+P+Y+ VIP   D +  ++      AV  VS +S     Q +    S+DKL + 
Sbjct: 237 SLINGEYPDYKRVIPSHFDAKAELDLNEFIDAVRFVSPISRDVNYQTINFFFSNDKLEIY 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD+GK+  ++ +      ++I FN  Y+ +I+ +   ++++ + +       N  + 
Sbjct: 297 EEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKIILNLIK------NGPML 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +          +++     YV+ PMR
Sbjct: 351 VE---------QESDKTYKYVVTPMR 367


>gi|296120310|ref|YP_003628088.1| DNA polymerase III, subunit beta [Planctomyces limnophilus DSM
           3776]
 gi|296012650|gb|ADG65889.1| DNA polymerase III, beta subunit [Planctomyces limnophilus DSM
           3776]
          Length = 377

 Score =  240 bits (614), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 162/394 (41%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA------NDGLLEIKASGPE-IEI 53
           M++   R+ +         ++  +    +  +V L A           ++  +  +   I
Sbjct: 1   MQLVCPRAVLSAAFTVVGAVVPSRTPREILKNVKLDAVASGPGATSSAQLTGTDGDGTSI 60

Query: 54  TGAI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
              +      V GS  +    L  I+R+L D            G  V +  G S F L +
Sbjct: 61  RFDLTDVECKVGGSALLPTQRLTSILRELTDDTVSLEV----NGDAVWLRCGGSEFRLSA 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
              ++FP+  E      F + + V + L++RT FA   E  RY L G+   I  + +++ 
Sbjct: 117 EDPADFPTAPEFVEEDYFVVPADVFRRLIKRTLFATDAESTRYALGGVLVEITADQVRM- 175

Query: 173 AVATDGHRLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
             ATD  RLAVA      +   ++     +VP KA+  I + L  + ++V +++  + I 
Sbjct: 176 -AATDSRRLAVAVGACSVEGQPVSGSQQPVVPSKAMSLIEKSLGDEATNVCLAIHTNDIS 234

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +     S++ +L+ G FP+Y+ VIP   + E+ +  +    AV +  ++++   + V  +
Sbjct: 235 IRAGRASITTQLVQGRFPDYRKVIPARYEAEIDLVASTFLSAVRQSQVVTNEESRGVDFT 294

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +   L +     D+G++   + + Y    + I F+ +++ + +  +         V  +
Sbjct: 295 FAEGTLRLASKAADIGQSKIELPIGYQGSELTIRFDPRFVGDFLRVLEGS----STVHLK 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           L +  S       D           +  YV+MP+
Sbjct: 351 LINDESPGVFTTDD-----------DYTYVIMPL 373


>gi|212659801|gb|ACJ36980.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 270

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 92/270 (34%), Positives = 154/270 (57%), Gaps = 5/270 (1%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSI 67
              L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G I
Sbjct: 5   KTFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEI 64

Query: 68  TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV 127
           T+ A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E  
Sbjct: 65  TIPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVT 121

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
               +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E +
Sbjct: 122 ERIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETE 179

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           +         II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP
Sbjct: 180 LEQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFP 239

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           +Y+ VIP   D+E++V    LR A+ R +I
Sbjct: 240 DYEGVIPIGADREVKVAREVLRDALQRAAI 269


>gi|295698377|ref|YP_003603032.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola
           USDA]
 gi|291156994|gb|ADD79439.1| DNA polymerase III, beta subunit [Candidatus Riesia pediculicola
           USDA]
          Length = 367

 Score =  240 bits (613), Expect = 2e-61,   Method: Composition-based stats.
 Identities = 101/386 (26%), Positives = 185/386 (47%), Gaps = 20/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +++  + + +     +   K T      +LL   D +L +     EI I   +   
Sbjct: 1   MKFIIQKEILFKSMKKIYGVANSKITNFSCDKILLSVKDNILSLTYLDSEIGIIAKVKLM 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D  GSI VS    ++I    Q  ++I FF   +    + I +G S F +  F E +FP
Sbjct: 61  YSDQDGSIVVSIRKFFNICLNSQPKSKIYFFFNKKN---LIIFYGRSKFSILVFSEFDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                    +F+++    K L+  T  +M  ++ RYYLN +     E  +K+  V+TDGH
Sbjct: 118 KLVIWNANSNFKISQMEWKRLILSTKISMGFQDARYYLNSMLLEKRENYIKM--VSTDGH 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+ + V I        S+++ R+++ E L++L + D  ++V + E    ++I ++S   
Sbjct: 176 RLSASYVKIQFGSQNDFSVLLSRRSIVECLKLLENNDDFLQVFIGEKDFRMDINNISFHA 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G FPNY++V+  +  K + VN    ++   R  I+ + + Q       ++ + +T 
Sbjct: 236 KLINGNFPNYESVLSRNKKKIVTVNRILFKEMCSRALILLNDKNQNACFVFENNLIRITT 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            N D G+  ES++  Y + P+ I  N KY+L++++ I       + V   +  S S + I
Sbjct: 296 KNFDQGEYEESIDSQYQDSPVKIYLNIKYVLDVLNIIQC-----ENVKIEITDSISYIRI 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +G          +   +FYV+MP+RI
Sbjct: 351 QGI---------SNRLSFYVIMPIRI 367


>gi|294101017|ref|YP_003552875.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM
           12261]
 gi|293615997|gb|ADE56151.1| DNA polymerase III, beta subunit [Aminobacterium colombiense DSM
           12261]
          Length = 383

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 175/391 (44%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M++ V + D +++     R+   K+TI     +L + +D  L ++A+  +  I       
Sbjct: 1   MRLQVSKPDFMKIWQTTERVTSTKSTITSLAGILCRTDDASLTLEATDLKTSIKCIASGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G   +   ++ ++ +K          KE     +  I  G + +   ++P  EFP
Sbjct: 61  QIEEGGEAILPVKVVGELFKKAPTDTFTVSVKEG----KGIIFAGRNTYRFSTYPVEEFP 116

Query: 120 STKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                E    F    A ++ + L E T  +   EE   YL    F +   D+++  V+TD
Sbjct: 117 HLPSSENAKFFCTVKAETLAQILSEGTVASTLGEEFPKYLGAALFELKGNDIRI--VSTD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL 235
           G RL++++V ++ +      I++P   + E+LR LSS   D  V++   ++  +  +  +
Sbjct: 175 GRRLSLSKV-LLDEYGDTEKILLPLAGLKELLRQLSSLEGDKPVQILHDDALAYFQMGDI 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK- 294
             S+R I+  FPNY+ ++   +   L +  + L +A++RV ++     + V   LS +  
Sbjct: 234 EFSIRKIESSFPNYEKILNPQSTTTLTIERSALTEALERVDVVVRDHTRMVIFKLSPNGD 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L M    P++G+A E ++   +  P+ I FN  YLL+ +  +  + V             
Sbjct: 294 LRMMGRAPEIGEAEEILDAQIDGEPLLIAFNVAYLLDGLKALHGESVF------------ 341

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   G +      +  + +  Y+LMP+++
Sbjct: 342 --ITFNGPEGQMSMLRPGRDDFLYMLMPIKL 370


>gi|329576317|gb|EGG57832.1| DNA polymerase III, beta subunit [Enterococcus faecalis TX1467]
          Length = 304

 Score =  240 bits (613), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 76/289 (26%), Positives = 144/289 (49%), Gaps = 13/289 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV+RS  L+ L    R I  K TIP+   V +  ++  L +  S  +I I   +   
Sbjct: 1   MKLTVKRSVFLQELQTVQRAISSKTTIPILTGVKIVLSEDGLSLTGSNADISIESFLSKD 60

Query: 61  -------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                  ++  GSI + +    +I+RKL +        +N    +V I+ G ++F +   
Sbjct: 61  DEKAQMTIERTGSIVLQSRFFGEIIRKLPEDMFTMEVLDN---NQVAITSGKADFTVNGL 117

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
               +P     +     +L   +L  ++  T FA++  E R  L G+ F +  E+ KL A
Sbjct: 118 DADNYPHLPVIDTQNQMKLPVHLLTKIISETGFAVSMHESRPILTGVHFIL--ENQKLLA 175

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL+   +    Q  +  +I++P K++ E+ R L++++  V++S+ E+++    E
Sbjct: 176 VATDSHRLSQRVIP-TEQAVEDFNIVIPGKSLTELSRSLTNEEEMVEISIMENQVLFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR 282
           ++    RL++  +P+   +IP S++ ++      L  A++R S++S  R
Sbjct: 235 TMYFYSRLLEVHYPDTNRLIPTSHNTQIEFYVPELLSAIERASLLSHER 283


>gi|78187986|ref|YP_378324.1| DNA polymerase III, beta chain [Chlorobium chlorochromatii CaD3]
 gi|78170185|gb|ABB27281.1| DNA polymerase III, beta subunit [Chlorobium chlorochromatii CaD3]
          Length = 374

 Score =  240 bits (612), Expect = 3e-61,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 171/388 (44%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI      + E +    + I  K+      ++        L +  +  E+ IT  I   
Sbjct: 1   MKILSSIRQLQEPVAKVAQAIPSKSVDGRYDNIHFTLEPNALTLFGTDGELSITAKIEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESEF 118
               G I ++A  L D +R + D       +  E+     V ++     + +    ES+ 
Sbjct: 61  STDSGHIGINARTLQDFLRSMYDTPVTLSIERQEISDHGMVEVTTDKGRYKIVCLFESKP 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               +  Y  + +L +S L  LV++T FA + + +R  + G+ F +  E   + AVATDG
Sbjct: 121 ERYDKV-YDITLDLPTSELLGLVQKTLFACSIDGMRPAMMGVLFEL--EGTTITAVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL     +    IA+   I++P + +  + ++   +  ++ VS     +      + + 
Sbjct: 178 HRLVRCRKESSLDIAEKQKIVLPARVLSILQKLAQHESITMCVSTDRRFVRFISGHMILD 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY  VIP  +DK + +N  +   +V RV   SS+    ++L L +D+L + 
Sbjct: 238 AALIVEPYPNYNAVIPVEHDKNVVINRQSFYDSVRRVGRFSSIDD--IRLILENDRLTVM 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N   G+ A E +   YN  PM I FN K++   + ++      D+E++  L S  ++V
Sbjct: 296 AENTSDGEAAQEELPCSYNGEPMTIGFNAKFVEAALAHLD-----DEEILIELKSPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     +  +++     ++MP+RI
Sbjct: 351 IFTS------SKIEDRDKLIILVMPVRI 372


>gi|212659784|gb|ACJ36976.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 265

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 5/266 (1%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 4   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 64  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++         II
Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 178

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   D+
Sbjct: 179 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 238

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQA 285
           E++V    LR A+ R +I+S+ + + 
Sbjct: 239 EVKVAREVLRDALQRAAILSNEKYRV 264


>gi|126640117|ref|YP_001083101.1| DNA polymerase III [Acinetobacter baumannii ATCC 17978]
          Length = 305

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 95/323 (29%), Positives = 169/323 (52%), Gaps = 30/323 (9%)

Query: 75  YDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELA 133
            +I + L   A I      +      +  G+S F L + P  ++P    E       ++ 
Sbjct: 1   MEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAEDYPLLTTENSQGTQVQVT 58

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
              LK L E+T FAMA +++R+YL G    I+E  L+  AV TDGHRLA+ E+   +  +
Sbjct: 59  QRELKRLFEKTAFAMAVQDVRFYLTGTLLEIDENQLR--AVTTDGHRLALCEILASSTSS 116

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES-----------LSMSVRLI 242
           ++   IVPRKAVGE+ R+LS +D  + + +    +++ I +           +  + +LI
Sbjct: 117 QLVQAIVPRKAVGELQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITVRFTTKLI 176

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNP 302
           DG+FP+Y+ VIP   DK + +     +Q++ RV+I+S+ +++ V L+ + D L +  +NP
Sbjct: 177 DGKFPDYRRVIPRGGDKHVLIGHDVFKQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNP 236

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +  +AIE + + Y   P+++ FN +YLL+++  +       D+V   +  +N SV ++  
Sbjct: 237 EQDEAIEDLAIQYQSAPLEMSFNAQYLLDVLGVLDG-----DDVNMSMTEANQSVLVQDP 291

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
                       +  YV+MPMR+
Sbjct: 292 ---------AHPDQTYVVMPMRV 305


>gi|329121619|ref|ZP_08250240.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM
           19965]
 gi|327468774|gb|EGF14251.1| DNA polymerase III subunit beta [Dialister micraerophilus DSM
           19965]
          Length = 369

 Score =  239 bits (610), Expect = 6e-61,   Method: Composition-based stats.
 Identities = 85/386 (22%), Positives = 167/386 (43%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI  ++ D++  L    R  + K T   +    + A D  +E +A+   + I     A 
Sbjct: 1   MKIIFKKQDLINSLETVQRAAQSKVTSNTNNGFFIAAKDNKVEFQANDYIVGIKTYCNAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   ++A  L   +R +         K+NE  T V    G       +    +FP 
Sbjct: 61  IEEEGITVIAAPQLLSTIRMIPSEEITMEIKKNE--TLVTFKAGQYIAKFPTRLHDDFPE 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      L    L  +     +A A ++ +    GI F I ++  K    AT+ HR
Sbjct: 119 ILNMQNTSKAILKCKDLVEMTNLVQYAAANDKQKPLFTGILFEIKDK--KFIMAATNTHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LAV E+++         IIVP   + +++++L   +D  V+++ +++ +     +     
Sbjct: 177 LAVKEIELEENANGEARIIVPAAIMTDVIKLLPEGEDEKVEITWAKNHVAFTFNNTYFIT 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
            LI+GE+P+Y+ VIP   D +  +       AV  VS +S     Q +    S+DKL + 
Sbjct: 237 SLINGEYPDYKRVIPSHFDAKAELYLNEFIDAVRFVSPISRDVNYQTINFFFSNDKLEIY 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD+GK+  ++ +      ++I FN  Y+ +I+ +   ++++ + +       N  + 
Sbjct: 297 EEDPDIGKSDTTIPLKLEGENIEITFNCTYIEDILKHSKGEKIILNLIK------NGPML 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +          +++     YV+ PMR
Sbjct: 351 VE---------QESDKTYKYVVTPMR 367


>gi|260174985|ref|ZP_05761397.1| DNA polymerase III, beta chain [Bacteroides sp. D2]
 gi|315923219|ref|ZP_07919459.1| conserved hypothetical protein [Bacteroides sp. D2]
 gi|313697094|gb|EFS33929.1| conserved hypothetical protein [Bacteroides sp. D2]
          Length = 371

 Score =  239 bits (610), Expect = 7e-61,   Method: Composition-based stats.
 Identities = 93/387 (24%), Positives = 178/387 (45%), Gaps = 20/387 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           M+ITV ++ +L+ L    RII+ KN+IP   + L   ++  + +  +G E   I+  I  
Sbjct: 1   MEITVSKTALLDKLKSIGRIIQPKNSIPAYDNFLFVVDEFGIILVTAGEEGGRISTNIDG 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             D    S   +A  L D ++++ +        E E    + + + +  F +      ++
Sbjct: 61  KTDFTDRSFMANAKTLLDGLKEIPEQPLTIHLYEKE----LVVKYANGKFSIPVEKGDQY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+   +       ++ + L   + +  F  A +E+R  LNG++F I+ ++  +  VATDG
Sbjct: 117 PTMSTDNTATPLLVSGNDLLYGIRQVLFCSANDELRPVLNGVYFDIDLDN--ISFVATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+ E        +  + I+P K    +  I+      V++S++++ I    +S  + 
Sbjct: 175 TRLAMIENPSAYTRKERAAFILPSKFAKVLSNIVPEDCMEVEISVNQTNILFEFDSYRLI 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I+G FPNY+ VIP        +  T++  A+ RVS+        V L    D L +T
Sbjct: 235 CRMIEGRFPNYRAVIPQKQPNRAVLKRTDIVSALKRVSVFCDENSSLVILKFCPDSLKIT 294

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             N D  K+ E        C ++I F   +L+E+I+NI S     +++   +   + +  
Sbjct: 295 AHNLDFCKSAEETVALRTGCDIEIGFKSSFLIEMINNIPS-----EDIAITMSDPSKASI 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D++ +       +  Y+LMP+ I
Sbjct: 350 LTRCDEEVR-------SLTYLLMPLSI 369


>gi|212659799|gb|ACJ36979.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 263

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/268 (33%), Positives = 153/268 (57%), Gaps = 5/268 (1%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69
            L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+
Sbjct: 1   FLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITI 60

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
            A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E    
Sbjct: 61  PARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTER 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++ 
Sbjct: 118 IIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELE 175

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
                   II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y
Sbjct: 176 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 235

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           + VIP   D+E++V    LR A+ R  +
Sbjct: 236 EGVIPIGADREVKVAREVLRDALQRAQL 263


>gi|212659819|gb|ACJ36984.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 264

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/269 (33%), Positives = 154/269 (57%), Gaps = 5/269 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           + L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT
Sbjct: 1   NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           + A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E   
Sbjct: 61  IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
              +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++
Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
                    II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+
Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           Y+ VIP   D+E++V    LR A+ R  +
Sbjct: 236 YEGVIPIGADREVKVAREVLRDALQRAQV 264


>gi|212659810|gb|ACJ36982.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 264

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 91/268 (33%), Positives = 153/268 (57%), Gaps = 5/268 (1%)

Query: 10  ILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITV 69
            L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+
Sbjct: 1   FLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITI 60

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
            A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E    
Sbjct: 61  PARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTER 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++ 
Sbjct: 118 IIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELE 175

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
                   II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y
Sbjct: 176 QAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDY 235

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSI 277
           + VIP   D+E++V    LR A+ R  +
Sbjct: 236 EGVIPIGADREVKVAREVLRDALQRAQL 263


>gi|328885264|emb|CCA58503.1| DNA polymerase III beta subunit [Streptomyces venezuelae ATCC
           10712]
          Length = 376

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 76/384 (19%), Positives = 146/384 (38%), Gaps = 27/384 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++   + E +  A R++  ++ +PV   +LL+A DG L +     E      + A 
Sbjct: 11  MEFRIDSGVLTEAVAWAARVLPARSPMPVLGGLLLEATDGGLRVSGLDHEASARVEVEAD 70

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
             V G   V    L DI + L  G      +    G  ++++ GD+ F L   P  ++P+
Sbjct: 71  TAVEGRALVLGRRLLDICKVLPRGVTELAVE----GARLSVTSGDARFGLSLLPLEDYPA 126

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 V             V +   A   ++    L GI   ++   + L   ATD +R
Sbjct: 127 PPALPEVRGQV-DGDAFAAAVGQVAVAAGRDDSLPVLTGIRLALDGTTMTL--AATDRYR 183

Query: 181 LAVAEVDIVAQIAK--MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            AV  ++   +        ++VP K + EI R L+      +++L +  +      L  +
Sbjct: 184 YAVRTLEWKPEAGGGTPADVVVPAKRLTEIARSLAGA-GPARLALDDGSVGFESGGLRTT 242

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL+DG  P +  +    +          L +AV RV++++      V+L+ +   L + 
Sbjct: 243 TRLLDGRLPRHDKLFALGDPALATTARAPLTEAVKRVAVVAEGDS-PVQLAFTPTSLHLQ 301

Query: 299 VDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
               +   A + +         + + FN  YLL+ +  + +      EV F L       
Sbjct: 302 A-GYEDDIASQRLPATLTGADTLTVAFNPGYLLDALTALDA-----PEVHFHLLGPGQRA 355

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLM 381
            +      +           ++LM
Sbjct: 356 LLTNGPTPTH---------RHLLM 370


>gi|258646403|ref|ZP_05733872.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470]
 gi|260403804|gb|EEW97351.1| DNA polymerase III, beta subunit [Dialister invisus DSM 15470]
          Length = 369

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 83/386 (21%), Positives = 162/386 (41%), Gaps = 21/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T +  D+   L    R  + K T   +    + A DG +E +A+   I I     A 
Sbjct: 1   MKVTFQTQDLCHALERVQRAAQTKVTSNTNNGFFISAEDGKVEFQANDYSIGIRTFCEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS+ +S+  L   ++ +  G  +   K+ E  + V    G  N +  +   +EFP 
Sbjct: 61  VEERGSVLISSPHLLSTIKMMPSGPVVMEQKKGE--STVFFKAGQYNSHFPTRDTAEFPL 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E ++ +   +       +V    FA +T+       GI   INE        AT+ HR
Sbjct: 119 VTEIDHTFHVNMKCKDFAEMVNLVSFAASTDAKNPIFTGILCDINEN--VFTMAATNSHR 176

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           LA  E+ +        + IV    + +++R+L   +D  +++S +   +  +        
Sbjct: 177 LAAREISLEEIPTGKGNFIVSASVLQDVIRLLPVGEDDMMEISWASRHVAFSFGETYFLS 236

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMT 298
            LI+G +P+Y+ V P S D    ++  +  +AV  VS +S     + +     +  L   
Sbjct: 237 NLINGVYPDYKRVFPSSFDLNATLDLKDFEEAVRFVSPISRDMSYKTINFKFENGTLEAF 296

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            ++PD+G++  S+    +   + I FN  Y+ +I+ +   ++++           N  + 
Sbjct: 297 EEDPDIGRSETSIPAELDGADVKITFNCTYVEDILKHSKGEKIILH------VKKNGPMV 350

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  ++  +           YV+ PMR
Sbjct: 351 VEQEEDKA---------YRYVVTPMR 367


>gi|212659788|gb|ACJ36978.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 263

 Score =  238 bits (609), Expect = 8e-61,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 155/266 (58%), Gaps = 5/266 (1%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 3   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 62

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 63  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 119

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++         II
Sbjct: 120 LIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLKRQII 177

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           +PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   D+
Sbjct: 178 LPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGADR 237

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQA 285
           E++V    LR A+ R +I+S+ + + 
Sbjct: 238 EVKVAREVLRDALQRAAILSNEKYRV 263


>gi|288573678|ref|ZP_06392035.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans
           DSM 11002]
 gi|288569419|gb|EFC90976.1| DNA polymerase III, beta subunit [Dethiosulfovibrio peptidovorans
           DSM 11002]
          Length = 386

 Score =  238 bits (608), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 177/391 (45%), Gaps = 26/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+T++++  ++    A R+  +K+T+ V   +L  A DG + ++A+  +  +       
Sbjct: 1   MKLTIDKTAFMKSWNVAERVAAQKSTLSVLSGILCTAEDGKVTLQATDLKTSVKVKSEGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++D  G   +   ++ ++ +K           E   G    +  G + +   ++P  +FP
Sbjct: 61  TIDEPGKAVLPIKVVGELFKKSPTSIFTVEVAERGTGI---LLSGRNRYRFTTYPADDFP 117

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATD 177
                E    F  LA   L  +++    A +  E    YL      +   +     V+TD
Sbjct: 118 PLPSPEGASQFCVLAKDELHRILDEGGIAGSMGEEFPKYLGAELLQVKSGEC--HCVSTD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235
           G RL++++  +  +  +   +++P  +V E LRILS   +D  V VS+  +  +  ++SL
Sbjct: 176 GRRLSLSKAYVDKENPEQ-DMLLPLTSVREFLRILSGLGEDLQVNVSVDGALGYFQLDSL 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK- 294
             SVR +D  FPNY+ ++  +    L V+ +    A++RV ++     + V L LS    
Sbjct: 235 EFSVRRVDSSFPNYERILSPNTTTTLDVDRSQFISALERVDVVVRDHSRMVVLILSPGGD 294

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++   P++G+A E ++       + + FN  +L++ +     D+V             
Sbjct: 295 LKLSGRAPEIGEATEIVDGIIKGESLKVAFNVGFLIDGLKAFHGDKV------------- 341

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S+   G++      + N+ +  Y+LMP+++
Sbjct: 342 -SLSFNGQEGQMMMLRPNESDFLYMLMPIKL 371


>gi|332798025|ref|YP_004459524.1| DNA polymerase III subunit beta [Tepidanaerobacter sp. Re1]
 gi|332695760|gb|AEE90217.1| DNA polymerase III, beta subunit [Tepidanaerobacter sp. Re1]
          Length = 381

 Score =  238 bits (607), Expect = 1e-60,   Method: Composition-based stats.
 Identities = 87/397 (21%), Positives = 165/397 (41%), Gaps = 33/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + R+++   +    + +  K  I +   +   A D  L + A+  ++ I   I   
Sbjct: 1   MKIVISRNELASGISAVEKFVPSKTPISILTGIKFSAYDDFLCLSATNLDMGIEYKIKNE 60

Query: 61  VD-----VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            D       GSI + + +L +IVR++ +       +EN    +  IS G  N  L  F  
Sbjct: 61  SDKLSILEGGSIVIGSKILSEIVRRISENTVEFDIREN----KAYISSGQFNMVLPCFDA 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI-RYYLNGIFFHINEEDLKLCAV 174
            +FP            L  S+ K++++RT +A A +   R  L G    I+ +D  L  V
Sbjct: 117 MDFPEISRNNSSDGIRLRQSMFKDMIKRTIYARADDTTSRPQLTGAL--IDYKDNILNMV 174

Query: 175 ATDGHRLAVAEVDI---VAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHL 230
           A DG R+A     +    A   +    IVP   + EI RI    + +  ++  S++ +  
Sbjct: 175 ALDGFRIAWCCEQLNETEASDIREFKTIVPGDTLLEISRIFEDDEQAYFELYASKNSVEF 234

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKL 288
             E   ++ R++DG+F +Y+ V+         V    LR AV+R S+++        VK 
Sbjct: 235 LTEKFLITSRVLDGDFIDYKTVMQIKPKTTAIVPTDELRLAVERASVLAREGNTNNLVKF 294

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            ++ + + + V+  ++G+  + +        M I FN  + ++ +  I S +     +  
Sbjct: 295 YIAENSIEVQVE-TELGRITDKVLCSTEGEEMLIAFNAGFFIDALKTIFSPK-----IKL 348

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     I   + D+  N          ++P+R+
Sbjct: 349 HFSDETGPCIITALETDNHKNF---------ILPVRL 376


>gi|319654505|ref|ZP_08008589.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
 gi|317393815|gb|EFV74569.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
          Length = 374

 Score =  237 bits (606), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 69/396 (17%), Positives = 156/396 (39%), Gaps = 36/396 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +  S + + L    +++  K+ IP+   + ++A +  L    S         +P  
Sbjct: 1   MHIKINHSVLSDALKKVEKVVNAKHNIPILQGIYMEATNEELIFIGSDSNESFRFHVPVE 60

Query: 61  VD-----VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G   +    + + V++ +    +        G  + +  G S F L +F  
Sbjct: 61  GENVEVYEPGKTVLP-KQVTETVKRFKKDITLKL-----DGFTLLLQSGRSKFNLNTFDP 114

Query: 116 SEFPSTKEEE-YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            EFP   +      +  L  + L NL+++T FA A  EIR  L G+   ++ +   +  V
Sbjct: 115 EEFPKLPDFAIEESTLFLKGTDLSNLIKKTGFAAADSEIRPILTGVCLDLSGDC--MQMV 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD HRL   +V       +    ++P K++ ++ +    ++       SE+++     S
Sbjct: 173 CTDSHRLGKVQVR--NTSDRDLKFVIPAKSLDKLNKTFDLQEDVHIYCESENQLIFRSGS 230

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA----VKLSL 290
           L    RL++G +P+   +IP     E+++N       ++ +  +++         +KL +
Sbjct: 231 LVFYCRLLEGTYPDTSRLIPQDFKAEMKINRKVFLDEIEIIRGIANNADNGQGGVIKLHV 290

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY-YNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVF 348
            +    ++      GK    ++           I F+ KY+++ +  I      D+ + F
Sbjct: 291 -NGAATISSYTAQTGKGESVVDYESLEGEDNFTISFSGKYIVDALKAID-----DEFISF 344

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + +       +   + + +           +++P+R
Sbjct: 345 KFNGEMRPFLLTPCESEYEE--------LQLVLPVR 372


>gi|325282257|ref|YP_004254798.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP]
 gi|324314066|gb|ADY25181.1| DNA polymerase III, beta subunit [Deinococcus proteolyticus MRP]
          Length = 360

 Score =  237 bits (605), Expect = 2e-60,   Method: Composition-based stats.
 Identities = 83/365 (22%), Positives = 177/365 (48%), Gaps = 22/365 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TV +  + E LG   R++  +++ P+   + ++A +  L +  +  E+++    PA 
Sbjct: 1   MKATVTKKVLSEGLGLLERVVPSRSSNPLLTSLKIEATEQGLHLSGTNLEVDLASFAPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    +  V AHLL  IVR L  G  +        G E+++  G S+F +Q+   + FP 
Sbjct: 61  VQNPQAFVVPAHLLSQIVRTL-GGELVELEL---SGDELSVRSGGSDFKIQTGDVAAFPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +S L   +    +A + E  +    G+     +   ++  VA+DG+R
Sbjct: 117 L-NFPSQVDATVEASDLARALNSVRYAASNEAFQAVFRGVKLEKRDNGARV--VASDGYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ +  +  ++ +   +I+P ++V E++R+L  +D   K+S  E ++ +  + + M+++
Sbjct: 174 VALHDFALEGEVRE---LIMPARSVDELVRML--RDGEAKLSYGEGQLSVTTDRVRMNLK 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           L+DGEFP+Y+ VIP     ++++   +L+++V RV++++       V+  ++  +L +  
Sbjct: 229 LLDGEFPDYERVIPTDTKLQVKLPSGSLKESVGRVAVLADKNANNRVEFLVTEGQLQLNA 288

Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  D G+A ++++V  +     + + FN KY+ + +  I        E       S    
Sbjct: 289 EG-DYGRAHDTLSVEQSGTEPAISLAFNAKYVQDALGPIEG------EAEMLFAESTKPA 341

Query: 358 FIRGK 362
             R  
Sbjct: 342 IFRPA 346


>gi|212659814|gb|ACJ36983.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 265

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 90/270 (33%), Positives = 155/270 (57%), Gaps = 5/270 (1%)

Query: 16  HACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLY 75
               ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y
Sbjct: 1   LIVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPARKIY 60

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135
           +IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  
Sbjct: 61  EIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERIIIAEV 117

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
           +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++       
Sbjct: 118 LLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQAKDLK 175

Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
             II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP 
Sbjct: 176 RQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPI 235

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             D+E++V    LR A+ R +I+S+ + + 
Sbjct: 236 GADREVKVAREVLRDALQRAAILSNEKYRG 265


>gi|281419998|ref|ZP_06250997.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205]
 gi|281405798|gb|EFB36478.1| DNA polymerase III, beta subunit [Prevotella copri DSM 18205]
          Length = 360

 Score =  237 bits (605), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 87/369 (23%), Positives = 164/369 (44%), Gaps = 18/369 (4%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYD 76
            ++I  KN++P+    L Q  +G + I AS  +  I   +     D  G   V   ++ D
Sbjct: 3   AKVIGSKNSLPILDCFLFQVANGEMSITASDSDNVIKSTLALTDHDGEGEFCVPNRVILD 62

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV-YSFELASS 135
            +++L +               + I + +  +        E+P T+       +  L + 
Sbjct: 63  ALKELPEQPLHFDVDAAGEAVAIKIVYQNGLYNFTGQSAEEYPRTQSMNDACTTVSLPTE 122

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
           +L N + R+ FA A++E+R  +NGI+F +  +   L  VA+DGH+L V   +   +    
Sbjct: 123 MLINNISRSLFATASDELRPVMNGIYFDLTADA--LAIVASDGHKL-VRSKNFTIKSESP 179

Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
            +  +P+K    +  ILS       +   +    +      M  RLIDG +PNY +VIP 
Sbjct: 180 SAFNLPKKPASLLKNILSKDGDDAIIKFDDRSAEIQFTDGVMRCRLIDGRYPNYNSVIP- 238

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVY 314
           +N  E+ V+   L+ A+ RV   +S   Q ++  + S +  ++ ++ D    A E ++  
Sbjct: 239 NNPNEVTVDRRGLQSALRRVLPFASESSQLIRFHIESGRFEVSSEDIDFSTSAKEQLSCE 298

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
           YN  P+ I F    L+EI+ N++S     D ++ +L   + +  I   ++          
Sbjct: 299 YNGSPISIGFKGSSLMEILSNLTS-----DNIIIQLADPSRAGIIVPAEQP------ENE 347

Query: 375 NAFYVLMPM 383
           +   ++MPM
Sbjct: 348 DILMLIMPM 356


>gi|55979970|ref|YP_143267.1| DNA polymerase III subunit beta [Thermus thermophilus HB8]
 gi|55771383|dbj|BAD69824.1| DNA polymerase III, beta subunit [Thermus thermophilus HB8]
          Length = 375

 Score =  237 bits (604), Expect = 3e-60,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 177/396 (44%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M ITV +  + + L    RI+  ++  P+  ++ L A +G L +  +  E+++   +PA 
Sbjct: 1   MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                 + V A   + +VR L  D   +    E   G ++ +S G     L   P   +P
Sbjct: 61  AQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEGYP 120

Query: 120 ST--KEEEYVYSF----ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
                E E   +F     + S  L   +    +A + EE R    G+    + +  +  A
Sbjct: 121 ELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR--A 178

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232
           VA+DG+RLA+ ++ +          +VP ++V E++R+L   D     ++L E  + L +
Sbjct: 179 VASDGYRLALYDLPLPQGF--QAKAVVPARSVDEMVRVLKGADGAEADLALGEGVLALAL 236

Query: 233 E---SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           E    + M++RL++GEFP+YQ VIP     +++V    LR+AV RVS++S  +   V L 
Sbjct: 237 EGGSGVRMALRLMEGEFPDYQRVIPQEFALKVQVEGEALREAVRRVSVLSDRQNHRVDLL 296

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           L   ++ ++ +  D GK  E +        M + +N +YLLE +        V D     
Sbjct: 297 LEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALA------PVGDRAHLG 349

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    S   I G          +      V++P+R+
Sbjct: 350 ISGPTSPSLIWG----------DGEGYRAVVVPLRV 375


>gi|86739451|ref|YP_479851.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3]
 gi|86566313|gb|ABD10122.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3]
          Length = 433

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 95/445 (21%), Positives = 158/445 (35%), Gaps = 77/445 (17%)

Query: 1   MKITVERSDILELLGHACRIIERKN--TIPVSCHVLLQANDGL----------------- 41
           M+ +VER    +  G A R +  +      V   +LL A  G                  
Sbjct: 1   MRFSVERDAFADATGWAARHLPNRPGPARNVLTGILLAAGHGSPASPGSAAVPLPSGSAA 60

Query: 42  ------------------------------LEIKASGPEIEITGAIPASVDVCGSITVSA 71
                                         L I A   E+ +   + ASVD  G + V  
Sbjct: 61  SPGSAAVPLPSGSAASPGSAAPLGAATASVLTICAYDTEVAVRAPVAASVDEPGRVLVPG 120

Query: 72  HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131
            LL DIVR L      +       G  + +  G   F +      E+P           E
Sbjct: 121 RLLTDIVRSLPA----TTVDVVVDGDRLVLRCGSVRFTVPLMDPGEYPQLPSFPGPIG-E 175

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           + +    + V +   A   +E    L  +   I+   L L  VATD +RLAV  +     
Sbjct: 176 VDTLGFASAVGQVAPAAGRDETMPVLTAVRMEISGRGLAL--VATDRYRLAVRGIPWQPT 233

Query: 192 IAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS-----ESRIHLNIESLSMSVRLIDGE 245
           +    ++  VP K + E+ R  +S  S + + L       +R+ L        VRLI+G 
Sbjct: 234 VDDPWALAHVPAKVLAEVARTPTSA-SRIVIGLDLDDPSGARLGLAAGGRQTIVRLIEGT 292

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           FPNY+ ++P      +    T    A  R   + + R   ++ + + +++     +    
Sbjct: 293 FPNYRKLLP-EAAALVVTAQTAALAAAVRRVAVVATRTGPLRFTFTHNQVVAEAGDGGGA 351

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS------SNSSVFI 359
           +A E++ V Y    + + FN  YLL+ +       V DD+             +     +
Sbjct: 352 QASETIPVEYAGPELSVLFNPSYLLDGLGA-----VEDDQATIGFVDDDPVEAAAKPAVL 406

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
            GKD  S     ++    Y+LMP+R
Sbjct: 407 TGKD--SGRGAVDEGAYRYLLMPIR 429


>gi|284109083|ref|ZP_06386475.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp.
           WGA-A3]
 gi|283829830|gb|EFC34123.1| DNA polymerase III, beta subunit [Candidatus Poribacteria sp.
           WGA-A3]
          Length = 281

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/293 (28%), Positives = 142/293 (48%), Gaps = 20/293 (6%)

Query: 99  VNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN 158
           V I  G   F +   P  +FP     E      L    L  L+ +T FA+   + RY LN
Sbjct: 3   VTIKAGRGEFKVVGLPSKDFPPLPAIEREGLIPLPGVGLLQLIRKTLFAVGDNDTRYVLN 62

Query: 159 GIFFHI--NEEDLKLCAVATDGHRLAVAEVDIVAQ----IAKMPSIIVPRKAVGEILRIL 212
           G+   +    E   +  V TDGHRLA+AE  +       + +   +IVP+KA  EI R+L
Sbjct: 63  GLLIVVTTEGESPMIRLVGTDGHRLAMAEQKLETDAKAPVEQEQKVIVPKKAAAEIRRLL 122

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
                   +  +++ +      L ++ RL++G +PNYQ V+P +++K++  N  +L  A+
Sbjct: 123 EEGGDEPMIGFTKNMVIFRKSGLVLTSRLMEGNYPNYQQVVPKASNKKITANREDLEGAL 182

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
            RVS++S  +  AVKL+ S   + +   +PDMG+A + +   +        FN +YLL++
Sbjct: 183 RRVSVLSQNKSYAVKLTFSKKAITLFSSHPDMGEANDEIPAAFTGEEFSAGFNARYLLDV 242

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + S     + VV  +++S S   IR +D               V+MP+++
Sbjct: 243 LGVMES-----ETVVLNMEASLSPCLIREEDNPLFQA---------VVMPVKV 281


>gi|32266625|ref|NP_860657.1| DNA polymerase III subunit beta [Helicobacter hepaticus ATCC 51449]
 gi|32262676|gb|AAP77723.1| DNA polymerase III [Helicobacter hepaticus ATCC 51449]
          Length = 353

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 83/383 (21%), Positives = 174/383 (45%), Gaps = 32/383 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ +S +  +L +    +++++   ++ H+  +A D  L +KA+  EI +   I   
Sbjct: 1   MKISLPKSSLETILTNCQNFLDKRDRSQITSHIYFEAQDDKLLLKATDYEIWLESYINIP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ TV+   + DI+++L+D       K++     ++IS G +   L  F   EFP 
Sbjct: 61  CQAQGNATVNGKQILDIIKRLKDDNVTIETKQDS----LHISQGKARTKLPMFNADEFPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      + S    N +++ + A+ T   +Y LNG    I   D     VATD  R
Sbjct: 117 FPEYDANAQINIESDKFLNSIKKINPAVDTNNPKYELNGSLLDIK--DYSFNFVATDTRR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+  ++         S+++P+KA+ EI ++      ++++  + + + L     +   +
Sbjct: 175 LAL--IEYKNPSINALSLVIPKKAINEIQKLFVD---TLEIYHNPTHLILKNNDYTFYTK 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI G++P+Y+ +IP     ++ +       A+  V  ++      +K++LS +++     
Sbjct: 230 LISGKYPDYEKIIPKEFKHKIVLPKDKFVDALQFVKSLA----NNIKITLSPNEVLFESL 285

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N + G+A   + V  N   + +  N KY+L+ +  I ++     E    ++  N+   + 
Sbjct: 286 NEESGEASTQIEVQTNIENLTLGINSKYILDFLSQIDAN-----EFTLCINEPNTPFVVM 340

Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383
            +            N   V+MP+
Sbjct: 341 SE------------NFSTVIMPV 351


>gi|46199911|ref|YP_005578.1| DNA polymerase III, beta chain [Thermus thermophilus HB27]
 gi|46197538|gb|AAS81951.1| DNA polymerase III, beta chain [Thermus thermophilus HB27]
          Length = 375

 Score =  236 bits (603), Expect = 4e-60,   Method: Composition-based stats.
 Identities = 99/396 (25%), Positives = 176/396 (44%), Gaps = 32/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M ITV +  + + L    RI+  ++  P+  ++ L A +G L +  +  E+++   +PA 
Sbjct: 1   MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTNGEVDLEVRLPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                 + V A   + +VR L  D   +    E   G ++ +S G     L   P   +P
Sbjct: 61  AQSLPRVLVPAQPFFQLVRSLPGDLVALGLASEPGQGGQLELSSGRFRTRLSLAPAEGYP 120

Query: 120 ST--KEEEYVYSF----ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
                E E   +F     + S  L   +    +A + EE R    G+    + +  +  A
Sbjct: 121 ELLVPEGEDKGAFPLRTRMPSGELVKALTHVRYAASNEEYRAIFRGVQLEFSPQGFR--A 178

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232
           VA+DG+RLA+ ++ +          +VP ++V E++R+L   D     ++L E  + L +
Sbjct: 179 VASDGYRLALYDLPLPQGF--QAKAVVPARSVDEMVRVLKGADGAEADLALGEGVLALAL 236

Query: 233 E---SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           E    + M++RL++GEFP+YQ VIP      ++V    LR+AV RVS++S  +   V L 
Sbjct: 237 EGGSGVRMALRLMEGEFPDYQRVIPQEFALRVQVEGEALREAVRRVSVLSDRQNHRVDLL 296

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           L   ++ ++ +  D GK  E +        M + +N +YLLE +        V D     
Sbjct: 297 LEEGRILLSAEG-DYGKGQEEVPAQVEGPGMAVAYNARYLLEALA------PVGDRAHLG 349

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    S   I G          +      V++P+R+
Sbjct: 350 ISGPTSPSLIWG----------DGEGYRAVVVPLRV 375


>gi|212659807|gb|ACJ36981.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 262

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 90/266 (33%), Positives = 152/266 (57%), Gaps = 5/266 (1%)

Query: 12  ELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA 71
           + L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A
Sbjct: 2   KPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEITIPA 61

Query: 72  HLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE 131
             +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      
Sbjct: 62  RKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTERII 118

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++   
Sbjct: 119 IAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETELEQA 176

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
                 II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ 
Sbjct: 177 KDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEG 236

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSI 277
           VIP   D+E++V    LR A+ R  +
Sbjct: 237 VIPIGADREVKVAREVLRDALQRAQL 262


>gi|149180587|ref|ZP_01859091.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
 gi|148851740|gb|EDL65886.1| DNA polymerase III subunit beta [Bacillus sp. SG-1]
          Length = 374

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 177/394 (44%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++   + + L    R+I    ++PV   V ++A+   L +     ++ I   I   
Sbjct: 1   MEFLIDTQRLKKALNIVGRVIPGNPSVPVLNGVKIEADLKGLILTGGDSDVSIAKTIDLQ 60

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G + V     +++++K+ D   I   K N+   +V I+ G+    L    
Sbjct: 61  QADAGRIIAPGKLVVPVRYFHNLIKKMPDDTFIKIKKFNK---QVKITSGEIETTLSLLN 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E ++P   E        +  S+L  ++++T FA++  + R  L G+ +  +E  L L  +
Sbjct: 118 EEDYPERPENTGNEGVRIKGSLLVEMIKQTQFAISASDSRAVLTGVNWEFSENQLTL--I 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           AT+  R+A+ +  + + +    S I+P KA+ E++  +  K   +++  S++ +    + 
Sbjct: 176 ATNSQRMAMRKAAMSSPVTG--SFILPGKAMTELVNAI-DKHQFIQIYPSDNLVIFQADD 232

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSS- 292
           L +  RLI G +P+   +IP     E+ V+   L Q + R ++++S  +   V  SL++ 
Sbjct: 233 LFLYTRLISGNYPDITKIIPEQTTTEVVVSRIKLLQGIGRANLLASEWKHNNVSFSLTNE 292

Query: 293 DKLCMTVDNPDMGKAIESM-NVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            ++ +T    ++G   E +  +       + I F+ K+L E + ++S     ++ V    
Sbjct: 293 GRIQLTSSTSEIGVITEKLTPLEIKGDLSLKISFDGKFLAEALKSMS-----EELVSLSF 347

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             S   + I+           NK +  +++ P+R
Sbjct: 348 GGSLRPIIIKP---------YNKKSTIHLISPVR 372


>gi|224437091|ref|ZP_03658072.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818]
 gi|313143562|ref|ZP_07805755.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818]
 gi|313128593|gb|EFR46210.1| DNA polymerase III subunit beta [Helicobacter cinaedi CCUG 18818]
          Length = 353

 Score =  236 bits (602), Expect = 5e-60,   Method: Composition-based stats.
 Identities = 89/383 (23%), Positives = 173/383 (45%), Gaps = 32/383 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI++ +S +   L +    +++++   ++ H+  +A D  L +KA+  EI +   I   
Sbjct: 1   MKISLPKSLLETALTNCQNFLDKRDRSQITSHICFEAKDDKLILKATDYEIWLESHINIQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+ T +   + DI+++L+DG      KE+     ++IS G S   L  F   EFP 
Sbjct: 61  PQAQGNATANGKQILDIIKRLKDGDINLEAKEDT----LHISQGRSRTKLPMFNADEFPR 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E +      + +      ++R + A+ T   +Y LNG    I E       VATD  R
Sbjct: 117 FPEYDNNAQINIEAQKFLTSLKRINPAVDTNNPKYELNGSLLDIKEYG--FNFVATDTRR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV  ++  +Q     S+I+P+KA+ EI R+       +++  + + + L     +   +
Sbjct: 175 LAV--IEYKSQSINALSLIIPKKAISEISRLFIDH---LEIYHNPTHLILKNNEYTFYTK 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FP+Y+ +IP     ++ +       A+  V  ++      +K++LS +++     
Sbjct: 230 LINGKFPDYEKIIPKEFKYKILLPKDKFVDALQFVKSLA----NNIKITLSPNEVLFESL 285

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           N + G+A   +        + +  N KY+L+ +  I  +     E  F ++ SN+   + 
Sbjct: 286 NEESGEASTQIEAQTGIESLTLGINSKYILDFLSQIDGN-----EFTFCINESNTPFIVM 340

Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383
            +            N   V+MP+
Sbjct: 341 SE------------NFSTVIMPV 351


>gi|193211678|ref|YP_001997631.1| DNA polymerase III subunit beta [Chlorobaculum parvum NCIB 8327]
 gi|193085155|gb|ACF10431.1| DNA polymerase III, beta subunit [Chlorobaculum parvum NCIB 8327]
          Length = 374

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 175/388 (45%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK       + E +      +  K+      ++ +   +G L + A+  E+ IT     +
Sbjct: 1   MKFNTTIKRLQEAVSKVILAVPTKSLDARFDNINMTLENGTLTMFATDGELSITAKCDVA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118
               G+I + A  L D +R + D       +   +G    V+I+     + +     S+ 
Sbjct: 61  SSDKGTIAIRARTLQDFLRSMYDTEVTFEIERQSIGDLGTVHIATDKGRYRIPCTFISKP 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            S  E  +  +  L  S L++++++T FA + + +R  + G+ F    E   + AVATDG
Sbjct: 121 ESL-ERNFDLTIGLQPSELQDIIQKTLFACSVDGMRPAMMGVLFEF--EGTVITAVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL         +IA+   I+VP + +  I R+L + + S+ V      +    E++ + 
Sbjct: 178 HRLVRCRKQTTNEIAEKQKIVVPARVLSIIQRLLQNDEVSMTVDEERRNVKFKSENVELE 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY+ VIP  N+K+L V+   +  +V RV   SS  I  +K+S   + + + 
Sbjct: 238 SALIVEPYPNYEAVIPVENEKKLVVDRGLIHDSVKRVGRFSS--IGDLKISAEGELMKVM 295

Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N  +   A E +   +    + I FN K++   + +I +     ++V   + S  ++V
Sbjct: 296 AENASEGESAQEELPCTFTGEEITIGFNAKFVEAALSHIET-----EQVSMEMSSPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + K ++ ++      +   ++MP+RI
Sbjct: 351 LFKPKYEERQD------DLIILVMPVRI 372


>gi|32490764|ref|NP_871018.1| hypothetical protein WGLp015 [Wigglesworthia glossinidia
           endosymbiont of Glossina brevipalpis]
 gi|25165970|dbj|BAC24161.1| dnaN [Wigglesworthia glossinidia endosymbiont of Glossina
           brevipalpis]
          Length = 369

 Score =  235 bits (601), Expect = 7e-60,   Method: Composition-based stats.
 Identities = 110/390 (28%), Positives = 198/390 (50%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           MK ++ R  IL  L     + +   +IP+  ++L+    +  + I  +  E EIT  I  
Sbjct: 1   MKFSINREYILSALQQIYLVSKYNTSIPIIGNILITVLRNKSMFITGTDLETEITKKIKL 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             D   G+ TVS   + DIV+     + I+FF +NE   ++ I    S F L + P   F
Sbjct: 61  ISDVEPGNTTVSTKKILDIVKSFPKESSINFFLKNE---KLFILCKKSKFVLCTLPYKNF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+    E      ++ + LK L+E T+F++A ++IR YLNG+   I + +++  +V+T+G
Sbjct: 118 PNLNNWEKKLKIRISKNKLKKLIESTYFSIANQDIRQYLNGMLLEIKKNNIR--SVSTNG 175

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL+ +++ I   I+     I+PR  V  +LRIL+ +   V++ + E  I +NIE   ++
Sbjct: 176 HRLSKSKIFIDKNISDAYIFIIPRSGVFNLLRILNQESDFVELVIGEKHIRINIEKYILT 235

Query: 239 VRLIDGEFPNYQNVIPCS--NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            +L++GEFP Y+ +   +  N   L V+C  L+  + RVS++S  + + + L+L  + L 
Sbjct: 236 TKLLEGEFPEYKAIFKKNSFNVNILIVDCFMLKNTLKRVSVIS-DKSKCINLNLKKNLLI 294

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           + + N +   A E +   Y    M+I  N  Y+L+ ++ I S       V   + +S S+
Sbjct: 295 INIKNFNQELAEEYLEAEYLGKEMEISCNSDYILDALNTIESK-----RVKIFVTNSYSA 349

Query: 357 VFIRGKDKDSKNNKDNKVNAF-YVLMPMRI 385
           + +           D   N   +++MPMR+
Sbjct: 350 IIL----------ADEIYNYTSHIIMPMRL 369


>gi|189345560|ref|YP_001942089.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245]
 gi|189339707|gb|ACD89110.1| DNA polymerase III, beta subunit [Chlorobium limicola DSM 245]
          Length = 374

 Score =  235 bits (600), Expect = 8e-60,   Method: Composition-based stats.
 Identities = 92/388 (23%), Positives = 176/388 (45%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ +     + + +    + I  K   P   +V L   +G+L + A+  EI IT      
Sbjct: 1   MRFSSTIRQLQDAVTKVSQAIPAKTIDPRYDNVHLTLENGMLTLYATDGEISITAKCEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118
               G+I + A  L D +R + D       +  E      V I+     + +    ES+ 
Sbjct: 61  TADSGNIGIKARTLQDFLRSMYDTPVTFSIERQEISDHGTVFIATDKGRYKIPCLFESKA 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             T E+ Y    +L ++ L++L+++T FA + + +R  + G+ F I E  +   +VATDG
Sbjct: 121 EKT-EKTYDIVLDLKTAELQDLIQKTVFACSVDGMRPAMMGVLFEIEENQIT--SVATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL      I  Q+ +   I+VP + +  I ++   ++ S+ +      +     ++ + 
Sbjct: 178 HRLVRCRKPITIQVEEKQKIVVPSRVLSIIQKLAQHENVSMSIDEERRTVCYICNNVVLE 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY+ VIP  +DK++    T++  +V RV   SS  I  +K+ +S + L + 
Sbjct: 238 AALIVEPYPNYEAVIPVEHDKKIVTQRTDIYDSVKRVGRFSS--IGDIKIEVSGEVLKIM 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A E +   Y+  P+ I FN K++   + ++      + E+   L S  ++V
Sbjct: 296 AENTNEGESAQEDLPCSYSGDPIIIGFNAKFIEAALAHLD-----ESEITIELKSPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +         +        ++MP+RI
Sbjct: 351 IFKP------GIQKENEELIILVMPVRI 372


>gi|320103682|ref|YP_004179273.1| DNA polymerase III subunit beta [Isosphaera pallida ATCC 43644]
 gi|319750964|gb|ADV62724.1| DNA polymerase III, beta subunit [Isosphaera pallida ATCC 43644]
          Length = 378

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 166/388 (42%), Gaps = 23/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M+   +R  +L        +   ++  P+  ++   A+     + A+  E+ I   +   
Sbjct: 1   MRTLCDRDGLLVGFTMVSSVAPARSPRPILQNLKFVADPDGSLLLATDQEVGIRFRVLGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  G+  +    +  I++  +D        E + G  + +   ++ F L       FP
Sbjct: 61  KVDQPGAAILPTQKMAQILKTSRDSEL---ALETDDGGSILVRGLNARFKLPGEDPDLFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              +        +A++ LK L++RT FA   E  R+ L G+ F  + E   L  V TDG 
Sbjct: 118 VFDDFTASAYHVVAAADLKKLIKRTIFATELESTRFALGGVLFEFSPEGNLLTGVGTDGR 177

Query: 180 RLAVAEVDIVAQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIESL 235
           RLA  +V    +          ++P KA+  + R L   D  V ++  S + + +  +  
Sbjct: 178 RLAHTQVPAEPEGGVTPPAGQPVIPVKALKLLDRNLDDDDPPVHIAFPSPNAVVIRTDRS 237

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            +  RL++G FP Y++V P S +  + +    LR  V++ +I++S   + V  + +  KL
Sbjct: 238 VIWSRLVEGRFPRYRDVFPTSCEARIPIEAGLLRSRVEQAAIVTSDESRGVDFTFADGKL 297

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +     D G++   M + Y+   ++I F+  YLLE++  +  +E +       L    +
Sbjct: 298 TLAARAADSGESQVEMPIRYSGATIEITFDPTYLLEMLKVLPEEEEIVI----ELIDDKN 353

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +  IR  D+             Y+LMP+
Sbjct: 354 AAVIRHADR-----------YSYILMPL 370


>gi|226354812|ref|YP_002784552.1| DNA polymerase III subunit beta [Deinococcus deserti VCD115]
 gi|226316802|gb|ACO44798.1| putative DNA-directed DNA polymerase (DNA polymerase III, beta
           subunit) [Deinococcus deserti VCD115]
          Length = 360

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 86/366 (23%), Positives = 169/366 (46%), Gaps = 22/366 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V +  + E L    R+I  +++ P+   + ++  +  L +  +  EI+++  +PA 
Sbjct: 1   MKANVTKKTLSEGLSLLERVIPGRSSNPLLTALKVETTEAGLTLSGTNLEIDLSCFVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    +  V AHL   IVR L  G  +        G E+++  G S+F LQ+     +P 
Sbjct: 61  VQQPQNFVVPAHLFAQIVRNL-GGELVELEI---TGNELSVRSGGSDFKLQTGDIEAYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E+     L +  L        +A + E  +    GI      E  ++  VA+DG+R
Sbjct: 117 LSFPEHAD-VSLNAEELAKAFSSVRYAASNEAFQAVFRGIKLEHRPESARV--VASDGYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ +           ++I+P ++  E++R+L  KD   + +  E  + +  + + M+++
Sbjct: 174 VAIRDFPA---SGDGRNLIIPARSADELIRVL--KDGEARFTYGEGLLSVTTDRVRMNLK 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           L+DG+FP+Y+ VIP     ++ +  T L++AV+RV++++       V+  +S  KL +  
Sbjct: 229 LLDGDFPDYERVIPKDIKLQVTLPATALKEAVNRVAVLADKNANNRVEFLVSEGKLRLAA 288

Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  D G+A ++++V        M + FN +++L+ +  I  D             S S  
Sbjct: 289 EG-DYGRAQDTLDVVQGGSEPAMSLAFNARHVLDALGPIEGD------AELLFSGSTSPA 341

Query: 358 FIRGKD 363
             R   
Sbjct: 342 IFRAAG 347


>gi|145218824|ref|YP_001129533.1| DNA polymerase III, beta subunit [Prosthecochloris vibrioformis DSM
           265]
 gi|145204988|gb|ABP36031.1| DNA polymerase III, beta subunit [Chlorobium phaeovibrioides DSM
           265]
          Length = 374

 Score =  235 bits (599), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 176/388 (45%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T     + + +G   + I  K+      ++ L    G L   A+  E+ IT      
Sbjct: 1   MKLTSSIKQLQDAVGKVAQAIPAKSIDQRFENIHLSIEPGALTFFATDGEVSITARSEVE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118
               G+I + A  L + +R + D +     +  E      VNI+     + +    +++ 
Sbjct: 61  TSDSGNIGIRARALQEFLRSMYDTSVSFSIERQEVSEHGTVNIATDKGRYTMPCLFQAK- 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P   E+ Y  S E+ +  + +++++T FA + + +R  + G+ F +  + L   A+ATDG
Sbjct: 120 PEKHEKNYDISLEMETGEMLDIIQKTTFACSVDGMRPAMMGVLFELEGDLLT--AIATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL     D    + +   I+VP + +  + ++  ++  S+ +      +  N  S+ + 
Sbjct: 178 HRLVRCRKDSSLCMPEKLKIVVPSRVLSILQKLAQTETVSMSIESERKFVRFNCGSIVLD 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY+ VIP  +DK+L +N + +  ++ RV   SS  I  VK+ +    L + 
Sbjct: 238 AALIIEPYPNYEAVIPVEHDKQLIINRSTIYDSIRRVGRFSS--IGDVKVQIEGAVLKIM 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A+E +   Y    + I FN ++L   + ++      + EV   L S  ++V
Sbjct: 296 AENTNEGESAVEELACNYTGEDISIGFNSRFLEAALAHLD-----ESEVSIELKSPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             R       + ++       ++MP+RI
Sbjct: 351 IFRP------HLEEKSDRLIILVMPVRI 372


>gi|312195933|ref|YP_004015994.1| DNA polymerase III subunit beta [Frankia sp. EuI1c]
 gi|311227269|gb|ADP80124.1| DNA polymerase III, beta subunit [Frankia sp. EuI1c]
          Length = 392

 Score =  234 bits (598), Expect = 1e-59,   Method: Composition-based stats.
 Identities = 92/409 (22%), Positives = 163/409 (39%), Gaps = 49/409 (11%)

Query: 1   MKITVERSDILELLGHACRIIERK--NTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP 58
           M++TV R++  E  G   R +  +    I     + + A    L + A   ++ +T  + 
Sbjct: 1   MRVTVPRAEFAEAAGWVARHLPARMAPGIVAIAGMRVDA-GERLTLSAFDYQVAVTATVE 59

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           AS  V G   V   L+ DI+R L D        E      + +    +++ +   P  ++
Sbjct: 60  ASAAVPGGALVPGRLVADIMRSLPDETVRLSVDEG----WLLVRAAGAHYRVPILPLEDY 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+          E+ +      V +   A A +E    L  +   +    L L  VATD 
Sbjct: 116 PALPTFPPPVG-EVDTLGFAAAVNQVVPAAARDETFPVLTALRLELAGRGLTL--VATDR 172

Query: 179 HRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSS-VKVSLSES---RIHLNIE 233
           +RLAV  +     +    ++  VP + + E+ RI ++     + +   +    R  L+  
Sbjct: 173 YRLAVRTIPWQPSVRDPEAVAHVPARLLAELARIPTAASRLALGLGADDDGGPRFGLSTG 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +  + VRL+DG FP+Y+ + P S    +      L  A+ RV++++      V+L+ S+ 
Sbjct: 233 ARRIVVRLVDGTFPHYRRLFPESVGLCVGAQIAPLAAAIRRVAVVAPRTGPVVRLTFSAG 292

Query: 294 KLCMTVDNPDMGK-------------AIESMNVYYNECPMDICFNYKYLLEIIDNISSDE 340
            L   V  PD G              A +S+ + Y+   +   +N  YLL+ +  +    
Sbjct: 293 VLTADV-GPDAGTTTAGDSGPLSLAAATDSVPIDYDGPDLVAWYNPTYLLDGLGAVDG-- 349

Query: 341 VVDDEVVFRLDSSNS------SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
              DEV     +S+          I GKD D            YVLMP+
Sbjct: 350 ---DEVTIGFAASDPDEAARLPAIITGKDDD---------GFRYVLMPV 386


>gi|241888986|ref|ZP_04776290.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379]
 gi|241864235|gb|EER68613.1| DNA polymerase III, beta subunit [Gemella haemolysans ATCC 10379]
          Length = 379

 Score =  234 bits (598), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 84/396 (21%), Positives = 182/396 (45%), Gaps = 31/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+ +S+ L+ L H  R+I   +   +   + ++     L +KAS   + +  ++   
Sbjct: 1   MKFTITKSNFLDGLNHVSRVIAPNSLFEILKGIKIELEKDKLILKASDSLVSVEYSVDSF 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                  +++  G + + +    +I+RK          +   +G  + +  G S F ++ 
Sbjct: 61  EDDKEVITIEEEGQVVLPSRNFIEIIRKAPTD----LIEIETVGNNILVKSGKSEFNVKG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           +  +++P         S +L ++V  ++++ T F  A  + R  L G+ F ++ +   L 
Sbjct: 117 YDANDYPEFPVISKENSLKLEANVFNDIIKETVFCTAPNDQRPILEGVNFSLSNK--ILT 174

Query: 173 AVATDGHRLAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
           A ATD +RL+  +V +      K  ++I+PRKA+    R++ +    V++    +RI L 
Sbjct: 175 ATATDSYRLSRRQVTLNDEDSNKEFNLIIPRKALTYFQRMIENGKDQVEIFYENNRIVLY 234

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            +++  +V LI G +PN   +IP   +     N      AVDRV++MS   +   +KL +
Sbjct: 235 YQNVVYTVLLISGNYPNTNKLIPTVFECTFVANSREFFSAVDRVALMSREDKDDIIKLVV 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           + + L ++  + ++G A+E + V     +   +I  + KYL +     +   V  +E++ 
Sbjct: 295 TDNLLEVSSQSKELGSAVEELKVSSTLEDEKFEISVSGKYLKD-----AVAAVAAEEIIV 349

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     ++  I+  D   +  +        +++P+R
Sbjct: 350 KFSGELTAFIIQPSDYHREIIE--------LILPVR 377


>gi|212659823|gb|ACJ36985.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 265

 Score =  234 bits (597), Expect = 2e-59,   Method: Composition-based stats.
 Identities = 90/264 (34%), Positives = 152/264 (57%), Gaps = 5/264 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           + L+ L H   ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT
Sbjct: 1   NFLKPLAHVVNVVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTIIEDAESGEIT 60

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           + A  +Y+IVR L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E   
Sbjct: 61  IPARKIYEIVRALPDASQLSVYQSDD---KITLQAGRSKFTLATLPANDFPSIDKIEVTE 117

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
              +A  +LK L+ERT FAMA +++RYYLNG+ F +   D KL  VATDGHRLA+ E ++
Sbjct: 118 RIIIAEVLLKELIERTAFAMAQQDVRYYLNGLLFDLR--DTKLRCVATDGHRLALCETEL 175

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
                    II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+
Sbjct: 176 EQAKDLKRQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPD 235

Query: 249 YQNVIPCSNDKELRVNCTNLRQAV 272
           Y+ VIP   D+E++V    LR A+
Sbjct: 236 YEGVIPIGADREVKVAREVLRDAL 259


>gi|21672842|ref|NP_660907.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS]
 gi|21645890|gb|AAM71249.1| DNA polymerase III, beta subunit [Chlorobium tepidum TLS]
          Length = 374

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 83/388 (21%), Positives = 179/388 (46%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK       + E +      +  K+      ++ L   +G+L + A+  E+ IT     +
Sbjct: 1   MKFNTTIKRLQEAVNKVILAVPAKSLDARFDNINLTLENGMLTMFATDGELSITTNCDVA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT--EVNISHGDSNFYLQSFPESEF 118
               G+I + A  L D +R + +       +   +G    ++I+     + +     ++ 
Sbjct: 61  STDKGNIAIRARTLQDFLRSMYETDVTFDIERQSIGELGTIHIATDKGRYRIPCTFTTK- 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P +++  +  S EL  + L++++ +T FA + + +R  + G+ F  +EE   + AV+TDG
Sbjct: 120 PESQKRNFDLSIELQQNELQDMIHKTLFACSVDGMRPAMMGVLFEFDEE--YITAVSTDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL          +A+   I+VP + +  I R+L++++  + +      +     ++ + 
Sbjct: 178 HRLVRCRKKPGVTVAEKQKIVVPARVLSIIQRMLTNEEVKMTIDSERRNVKFKTATMELE 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY+ VIP  N+K+L  + + L  +V RV   SS  I  +K+S    ++ + 
Sbjct: 238 SALIVEPYPNYEAVIPVENEKQLVTDRSQLHDSVKRVGRFSS--IGDLKISAQDSQIKVM 295

Query: 299 VDN-PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N  +   A E +   +    + I FN K++   + +I +     ++V   + S  ++V
Sbjct: 296 AENASEGESAQEELPCTFTGEEITIGFNAKFVEAALSHIET-----EQVSIEMSSPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + K ++ ++      +   ++MP+RI
Sbjct: 351 LFKPKYEERQD------DLIILVMPVRI 372


>gi|46578419|ref|YP_009227.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|46447830|gb|AAS94486.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str.
           Hildenborough]
 gi|311232351|gb|ADP85205.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris RCH1]
          Length = 384

 Score =  233 bits (595), Expect = 3e-59,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + D++E L  A  II  K        + L A DG L + A+   IE  G   A 
Sbjct: 1   MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V      D++RKL  G  +     +     + I  G   + L       F +
Sbjct: 61  VTEPGLAGVQGRAFVDLLRKLPAGEIVLQL--DAEANVLRIEQGRRKYKLPVNDPVWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +   +   L+ L++R  F ++ E+    +  +F     E  ++ A   +GH+
Sbjct: 119 FSDFPADGAVVWSGDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEG-RIEACGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+         AK+P+  ++V +K +GE+ + L + +  +++++SE R+HL       +
Sbjct: 178 FAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEKRMHLRTGDGRET 235

Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            S+ L   ++P+Y N I          L V+      A+DR+ I +S   +     LS  
Sbjct: 236 FSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSDNNRCTYFDLSGG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +T    D+G A ES+   Y+     I F  + L++I+++  S       +   L  +
Sbjct: 296 EVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS-----GRLRLTLTGA 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I G++               ++MPM+I
Sbjct: 351 EGPCGISGEEDPE---------YQVIVMPMKI 373


>gi|239943012|ref|ZP_04694949.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|239989470|ref|ZP_04710134.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           11379]
 gi|291446484|ref|ZP_06585874.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
 gi|291349431|gb|EFE76335.1| DNA polymerase III subunit beta [Streptomyces roseosporus NRRL
           15998]
          Length = 383

 Score =  233 bits (595), Expect = 4e-59,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 152/394 (38%), Gaps = 25/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQ----ANDGLLEIKASGPEIEITGA 56
           M+  +ERS + E +  A R++  ++ +PV   +LL     A DG L I     E      
Sbjct: 1   MEFRIERSALTEAVSWAARVLPVRSPVPVLGGLLLDTGSGAGDGRLRISGLDYEASARID 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           + A V   G + V    L DI + L DG  +    E   G+   +S   + F L   P  
Sbjct: 61  VEAEVPRPGKVLVMGRRLLDICKVLPDGP-VECAVE---GSRFTVSGDGARFGLSVLPLD 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P+      V    + + +    V     A   ++    L GI   ++ + + L   AT
Sbjct: 117 DYPALPPLPQV-RGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTL--AAT 173

Query: 177 DGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           D +R AV  V   A    +   ++V  + + EI R L  +   V V+L           +
Sbjct: 174 DRYRFAVRTVPWKATAPGESADVLVSARRLTEIARSL-GRSGLVSVALDAGSAGFEHAGM 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SD 293
             +VRL++G  P ++ +    +     V+   L +AV RVS+++  R   V+++ S    
Sbjct: 233 RTTVRLLEGRLPRHEKLFAMEDPAVAVVDRARLTEAVKRVSVVA-DRDSPVQMTFSRTDA 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +     +   A + +         + + FN  YL + +   +        +  +L  
Sbjct: 292 SVTLRA-GYEDDVASQRLPAALEGAEELTVAFNPAYLADALAAFTGPS-----LRLQLLG 345

Query: 353 SNSSVFIRGKDKDSKNNKD--NKVNAFYVLMPMR 384
           +     I           D        ++LM +R
Sbjct: 346 AGQRALITDGAGPGGTPTDGAGPGTHRHLLMSVR 379


>gi|254796561|ref|YP_003081397.1| DNA polymerase III, beta subunit [Neorickettsia risticii str.
           Illinois]
 gi|254589798|gb|ACT69160.1| DNA polymerase III, beta subunit [Neorickettsia risticii str.
           Illinois]
          Length = 372

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 105/387 (27%), Positives = 188/387 (48%), Gaps = 31/387 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---IPA 59
           ITV++  +  +LG+   +  RK+TI    HV ++     +E+  +  E+ +T +   I  
Sbjct: 9   ITVQQDALTRILGNLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +D   +I+V A  LY+IV++L     +    E +    + +      F L       FP
Sbjct: 69  VIDA--AISVDAFRLYEIVKRLPTDVGVVLSIEKDN---LVVRSKRIEFSLPYLDAKHFP 123

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              EEE +     A   +++L  +  FA + E  R +LNG++F  + E  K+   ATD H
Sbjct: 124 LISEEEKIGQINFAGDEIRSLFNKVRFATSNESTRQHLNGVYFESDGE--KITVAATDVH 181

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237
           RLAVA   +  +     S I+P+K V E++++ SSK+  + +   E  SRI +   S+ +
Sbjct: 182 RLAVA--TLTKKTGLKFSCIIPKKTVSEMIKLSSSKEVELFLHGREYISRIKMVFGSVRL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI G FPN+  VIP S    L  +   L  +++RV ++S  + +A+ + +   +L +
Sbjct: 240 NSKLIAGTFPNFAAVIPQSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299

Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
              N D     E + +  +    + I FN+ YLL+I+  +      + EV  + +++ S 
Sbjct: 300 DASNSDASFGRELLELNEDTGEEISIYFNHVYLLDILSALD-----NKEVTMKFNNATSQ 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           V  +G +           +A YV+MPM
Sbjct: 355 VLFQGDE-----------SALYVVMPM 370


>gi|218442573|ref|YP_002380894.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7424]
 gi|218175344|gb|ACK74075.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7424]
          Length = 479

 Score =  232 bits (592), Expect = 7e-59,   Method: Composition-based stats.
 Identities = 78/393 (19%), Positives = 171/393 (43%), Gaps = 27/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ +SD+   L     II  + T P+  + +LQA +G L I A    + +  ++ A 
Sbjct: 1   MRLTINQSDLSTHLEKVKPIIPNRPTHPILGNFVLQATEGQLTISAFNLSLGVKTSLKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118
           V   G+ITV A LL  ++  L + +      EN  E    + I   +S + ++     E+
Sbjct: 61  VSGLGTITVPAKLLSGLIASLPNQSLTLEVDENKEENNDILWIKCSESKYQIRYLDVDEY 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     +   +  +       L+       + +E +  L G+  H+  ++ KL    TDG
Sbjct: 121 PDIPSLDESETISIKMKTFIELLNPVLPTYSEDETKQVLVGV--HLVGKNNKLELATTDG 178

Query: 179 HRLAVAEVDIVAQIA-----KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR--IHLN 231
           HRL+V    + +        K   + +  K +  + + +   D + ++ +S ++  +  N
Sbjct: 179 HRLSVTGALLESDSENPVDYKEMDLTIRGKDLEYLYKNIKDLDPTEELKISWNKELVKFN 238

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           + S  ++ RL+ G +PNY  +IP     +L    + + +AV R+ +++  +   + +  +
Sbjct: 239 LTSSVITTRLLQGVYPNYNELIPPQFKGQLTFIGSEMIEAVKRLLLLNPDK-NIIVIEAN 297

Query: 292 SD--KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            +   L +T  + ++G+  E+++  +    + +  N KYL+E I  + +       +   
Sbjct: 298 KNLQTLTVTTFDTEVGQGSETIHAEFA-LNLKMGVNGKYLIEAIKALDAKS-----LTMN 351

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
           +++  S   +   +               ++MP
Sbjct: 352 INTPTSPAVLVPSE-------CTLARCLVLIMP 377


>gi|120601057|ref|YP_965457.1| subunit beta [Desulfovibrio vulgaris DP4]
 gi|120561286|gb|ABM27030.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris DP4]
          Length = 384

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 89/392 (22%), Positives = 164/392 (41%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + D++E L  A  II  K        + L A DG L + A+   IE  G   A 
Sbjct: 1   MYLKVYKEDVIEGLQKAANIIPAKTGAAYLRSIWLNAADGTLSVMATDSNIEFRGTYTAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V      D++RKL  G  +     +     + I  G   + L       F +
Sbjct: 61  VTESGLAGVQGRAFVDLLRKLPAGEIVLQL--DAEANVLRIEQGRRKYKLPVNDPVWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     +   +   L+ L++R  F ++ E+    +  +F     E  ++ A   +GH+
Sbjct: 119 FSDFPADGAVVWSGDFLQELIDRIAFCISDEDAVEAIACLFMKPVAEG-RIEACGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+         AK+P+  ++V +K +GE+ + L + +  +++++SE R+HL       +
Sbjct: 178 FAMLRFLHDDLHAKLPAEGVLVQKKYLGELKKWLGADE--IELNISEKRMHLRTGDGRET 235

Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            S+ L   ++P+Y N I          L V+      A+DR+ I +S   +     LS  
Sbjct: 236 FSLPLSSYQYPDYMNFIAKLQGEGVSNLEVDRKEGMDALDRLQIFNSDNNRCTYFDLSGG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ +T    D+G A ES+   Y+     I F  + L++I+++  S       +   L  +
Sbjct: 296 EVVLTAQGQDVGSASESLEASYDGDIRRIAFPTRNLIDIMNHYQS-----GRLRLTLTGA 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I G++               ++MPM+I
Sbjct: 351 EGPCGISGEEDPE---------YQVIVMPMKI 373


>gi|34541464|ref|NP_905943.1| DNA polymerase III subunit beta [Porphyromonas gingivalis W83]
 gi|34397781|gb|AAQ66842.1| DNA polymerase III, beta subunit [Porphyromonas gingivalis W83]
          Length = 377

 Score =  232 bits (592), Expect = 8e-59,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 166/389 (42%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L    R+I  ++T+P+   VL +     L + A+     ++  +  +
Sbjct: 1   MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60

Query: 61  --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                 GS  V   +L + +++L D              E+  S+G  +F +Q       
Sbjct: 61  NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDVSTYPV 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            ++   E + S    +  L + +  T FA + +E R  + G++    E+  KL  V +DG
Sbjct: 121 AASLSPEAIVSIV-PAEALLSGLSATLFATSQDERRPIMTGVYLDFFED--KLVFVGSDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
             L V + D   Q  +  +  +PRKA   +  +L   +  V ++   + +H+ + + ++ 
Sbjct: 178 QIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLR 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL++G +PNY +VIP SN   ++V+   L     RVSI S+     +++  +   + ++
Sbjct: 237 ARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLS 296

Query: 299 VDNPDMG-KAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
            ++ D    A E +         M I F       I+  + S     +EV+  L     +
Sbjct: 297 ANDIDFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPS-----EEVIMTLADQTRA 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I   +     +  N      +L+PM++
Sbjct: 352 GLILPAENAPGISLCN------LLLPMKL 374


>gi|94984112|ref|YP_603476.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
 gi|94554393|gb|ABF44307.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
          Length = 360

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 87/364 (23%), Positives = 170/364 (46%), Gaps = 22/364 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V +  + E LG   R+I  +++ P+   + ++A++  L +  +  EI+++  +PA 
Sbjct: 1   MRAHVTKKTLSEGLGLLERVIPSRSSNPLLTALKVEASEAGLTLSGTNLEIDLSYFVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    S  + AHL   IVR L  G  +        G E+++  G S+F LQ+     +P 
Sbjct: 61  VQAPQSFVIPAHLFAQIVRNL-GGELVELEL---TGGELSVRAGGSDFKLQTGDLEAYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      L ++ L   +    +A + E  +    GI         ++  VA+DG+R
Sbjct: 117 L-SFPTHTDVSLDAAELARALGSVRYAASNEAFQAVFRGIKLEHRPASARV--VASDGYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ +           ++IVP ++  E++R+L  KD   + +  E  + +  + + M+++
Sbjct: 174 VAIRDFPA---SGDGRNLIVPARSADELIRVL--KDGEARFTYGEGLLSVTTDRVRMNLK 228

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTV 299
           L+DGEFP+Y+ VIP     ++ +  T L++AV RV++++       V+  +S  KL +  
Sbjct: 229 LLDGEFPDYERVIPKDVKLQVTLPATALKEAVGRVAVLADKNANNRVEFLVSEGKLRLAA 288

Query: 300 DNPDMGKAIESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           +  D G+A ++++V        M + FN +++L+ +  I  D             S S  
Sbjct: 289 EG-DYGRAQDTLDVVQGGAEPAMSLAFNARHVLDALGPIEGD------AELLFSGSTSPA 341

Query: 358 FIRG 361
             R 
Sbjct: 342 IFRA 345


>gi|284030634|ref|YP_003380565.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836]
 gi|283809927|gb|ADB31766.1| DNA polymerase III, beta subunit [Kribbella flavida DSM 17836]
          Length = 382

 Score =  232 bits (591), Expect = 9e-59,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 154/390 (39%), Gaps = 26/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I  E+ ++ E +    R +  +   PV   VLL A      I  +   I     +  S
Sbjct: 1   MEIVAEQQELAETIAWVARSLPHRPGAPVLRGVLLTATGDGTTIAGTDQAIANRAGLACS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           VD  G+      +L +IV+ L  G+      +N     + ++ G + + L   P  EF  
Sbjct: 61  VDEPGTCLAPGRMLAEIVKLLPPGSLRLETVDNA----LVLTSGTATYALPLMPVEEFAP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                  +S E+        V +   +   +++   L+GI      + ++L  V+TD +R
Sbjct: 117 LPALPDEHSAEVEPEEFGTAVAQVAVSAGRDDVVPALSGINLAFAADQVEL--VSTDRYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKV--------SLSESRIHLNI 232
           L +A V + A +     ++VP K + +++R  S+    +++                  +
Sbjct: 175 LGIARVPLAAPVVGPFDVLVPAKPLQDLIRAYSNDPGPLRLSAGAGTGSGAGAGDATFGL 234

Query: 233 ESLSMSV--RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            +   S   R++ G +  Y+ +IP  +  +LR +   LR+ V R++++++     +   L
Sbjct: 235 RNAVRSTCLRVLSGPYLPYRRIIPDGSTTQLRTDRAALREVVKRLAVVAAGMT-PIWFDL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           + D L +   +P      E++       P+ I F    L + I +  +      ++    
Sbjct: 294 TGDDLRVHAGSPGDPTGAETLPAKRTGPPLTIAFTATLLADAISSFGTS-----QLCVAF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVL 380
             +   V I G   D     D      +VL
Sbjct: 349 AGARKPVLITGATADGAPAGD----YRHVL 374


>gi|291520348|emb|CBK75569.1| DNA polymerase III, beta subunit [Butyrivibrio fibrisolvens 16/4]
          Length = 301

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 60/279 (21%), Positives = 137/279 (49%), Gaps = 7/279 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT +++D+++ +    + +  + T+ +   +L+ A+ G +++ A+  EI I   +  +
Sbjct: 1   MKITCQKADLVKGVNIVSKAVPTRTTMAILECILIDASAGEIKLTANDMEIGIETIVNGN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A    +IVRKL D        E +   + +I+   + F +      +F  
Sbjct: 61  ILERGIIALDAKKFSEIVRKLPDNEV---TIETDSTYKTSITCEKAKFDIIGKSGEDFSY 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +      ++   L++++ +T F++A  E    + G    I   D KL  VA DGHR
Sbjct: 118 LPNIQRNQPIVISQLTLRDIIRQTIFSVADNENNKMMTGELIEIK--DNKLKVVALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK-DSSVKVSLSESRIHLNIESLSMSV 239
           +++  V++      +  ++VP+K + EI++I+    D  V + ++++ I    +  ++  
Sbjct: 176 VSIRNVELKNPAEDV-KVVVPKKTLNEIIKIVDGGIDDEVNIFVTDNHIIFEFDQTTVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
           R+I+GE+   + ++    + ++++N       +DR +I+
Sbjct: 235 RIIEGEYFKIEQMLSADYETKIKINKREFFDCIDRATIL 273


>gi|293550168|ref|ZP_06672840.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
 gi|290919215|gb|EFD96291.1| LOW QUALITY PROTEIN: DNA polymerase III, beta subunit
           [Staphylococcus aureus subsp. aureus M1015]
          Length = 290

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 71/308 (23%), Positives = 149/308 (48%), Gaps = 22/308 (7%)

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
           +KL          E     +  I+ G S F L      ++P   +     + +L+  VLK
Sbjct: 1   KKLPGKDVKLSTNE---QFQTLITSGHSEFNLSGLDPDQYPLLPQVSRDDAIQLSVKVLK 57

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
           N++ +T+FA++T E R  L G+ + I E +  L   ATD HRLAV ++ +   +++  ++
Sbjct: 58  NVIAQTNFAVSTSETRPVLTGVNWLIQENE--LICTATDSHRLAVRKLQLE-DVSENKNV 114

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           I+P KA+ E+ +I+S  +  + +  + +++   + +++   RL++G +P+   + P + +
Sbjct: 115 IIPGKALAELNKIMSDNEEDIDIFFASNQVLFKVGNVNFISRLLEGHYPDTTRLFPENYE 174

Query: 259 KELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYN 316
            +L ++      A+DR S+++       +KLS   D + ++  +P++G   E ++     
Sbjct: 175 IKLSIDNGEFYHAIDRASLLAREGGNNVIKLSTGDDVVELSSTSPEIGTVKEEVDANDVE 234

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
              + I FN KY+++ +  I      +DEV      +     ++ K  DS          
Sbjct: 235 GGSLKISFNSKYMMDALKAID-----NDEVEVEFFGTMKPFILKPKGDDSVTQ------- 282

Query: 377 FYVLMPMR 384
             +++P+R
Sbjct: 283 --LILPIR 288



 Score = 36.8 bits (84), Expect = 5.8,   Method: Composition-based stats.
 Identities = 31/243 (12%), Positives = 72/243 (29%), Gaps = 10/243 (4%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-V 61
           I +    +  ++      +    T PV   V     +  L   A+         +    V
Sbjct: 49  IQLSVKVLKNVIAQTNFAVSTSETRPVLTGVNWLIQENELICTATDSHRLAVRKLQLEDV 108

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--YLQSFPESEFP 119
               ++ +    L ++ + + D  +           +V    G+ NF   L      +  
Sbjct: 109 SENKNVIIPGKALAELNKIMSDNEEDIDIF--FASNQVLFKVGNVNFISRLLEGHYPDTT 166

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               E Y     + +    + ++R              N I     ++ ++L + + +  
Sbjct: 167 RLFPENYEIKLSIDNGEFYHAIDRASLLAREGGN----NVIKLSTGDDVVELSSTSPE-I 221

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
                EVD          I    K + + L+ + + +  V+   +     L  +      
Sbjct: 222 GTVKEEVDANDVEGGSLKISFNSKYMMDALKAIDNDEVEVEFFGTMKPFILKPKGDDSVT 281

Query: 240 RLI 242
           +LI
Sbjct: 282 QLI 284


>gi|291278434|ref|YP_003495269.1| DNA polymerase III subunit beta [Deferribacter desulfuricans SSM1]
 gi|290753136|dbj|BAI79513.1| DNA polymerase III, beta subunit [Deferribacter desulfuricans SSM1]
          Length = 369

 Score =  232 bits (591), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 175/386 (45%), Gaps = 22/386 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK    ++D+ EL+ HA      KN   V  ++ ++A    + IK++  +   TG     
Sbjct: 1   MKFKCIKNDLQELVQHANNFTTTKNINTVLQNLFIEAEGNTITIKSTNLQTAFTGKFETE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G+ TV A  L +I+++L DG  I        G+++ I  G S F L +     FP+
Sbjct: 61  IIESGTTTVPAKKLLEILKELPDGNIIDA---EFTGSKLVIKSGKSIFTLSTISPEYFPT 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E    Y   L S V K+++E+ +F ++ +  +    G    +    ++L   A D  +
Sbjct: 118 VSEIVPEYFIRLKSDVFKSMLEKVNFCISNDHSKVEYTGGHIKVFGNKIELS--AADFQK 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+AE     + +   +I VP+K V E++++L   +  V++   + +    I ++++  +
Sbjct: 176 IAIAESKFDEEFSDEFTINVPKKTVNELIKLLDYSEY-VEIETDKKQALFKINNITIYTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+    +   +        + ++  +   +V RVS ++S    A   S ++DKL +   
Sbjct: 235 LIEKYIQSLSKLFDIQPKITVSIHKESFLNSVKRVSTLTSDITHAAVFSFNTDKLDIYSL 294

Query: 301 NPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             + G+  ES+  + Y   P++I  N K+++E++++I++     +    ++    + V  
Sbjct: 295 ETEYGQGYESIEGITYEGEPIEIILNTKHVIEVMNHINT-----EYFTMKMIGRKNPVLF 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
              +              Y+L P+ I
Sbjct: 350 YPDED----------WYKYLLTPISI 365


>gi|78185893|ref|YP_373936.1| DNA-directed DNA polymerase [Chlorobium luteolum DSM 273]
 gi|78165795|gb|ABB22893.1| DNA polymerase III, beta subunit [Chlorobium luteolum DSM 273]
          Length = 378

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 88/388 (22%), Positives = 178/388 (45%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+T     + + +    + I  K+      ++ L    G L + AS  E+ IT      
Sbjct: 5   MKLTSSIRQLQDAVSKVAQAIPAKSIDQRFENINLSLEPGELTLFASDGEVSITAKSGVE 64

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118
               G+I + A  L D +R + D + +   +  E      V+IS     + +    +S+ 
Sbjct: 65  SSDSGNIGIRARTLQDFLRSMYDTSVMFSIERQEISDHGTVSISTDKGRYRIPCLFQSK- 123

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P  ++++Y  S E+ +S + +L+++T FA + + +R  + G+ F +  E   + AVATDG
Sbjct: 124 PEKQDKQYDISIEMETSEMLDLIQKTTFACSVDGMRPAMMGVLFEL--EGSIITAVATDG 181

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL          +++   ++VP + +  + ++  +   +++       +     S+ + 
Sbjct: 182 HRLVRCRKASSVDLSEKNKVVVPARVLSILQKLAQTDSVTMQFDSERKFVRFICGSIVLD 241

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY+ VIP  +D+ L +N + +  +V RV   SS  I  VK+ L    + + 
Sbjct: 242 AALIVEPYPNYEAVIPVEHDRNLIINRSMIYDSVRRVGRFSS--IGDVKVVLEGQMMKIM 299

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A E +   ++   M I FN +++   + ++      ++E+   L S  ++V
Sbjct: 300 AENTNEGESAQEELACEFSGEDMAIGFNSRFIEAALAHLD-----ENEIRIELKSPTTAV 354

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             R   ++         N   ++MP+RI
Sbjct: 355 IFRPHGEE------ENDNLIILVMPVRI 376


>gi|260912252|ref|ZP_05918804.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral
           taxon 472 str. F0295]
 gi|260633686|gb|EEX51824.1| DNA-directed DNA polymerase III beta subunit [Prevotella sp. oral
           taxon 472 str. F0295]
          Length = 349

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 91/362 (25%), Positives = 169/362 (46%), Gaps = 19/362 (5%)

Query: 27  IPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSITVSAHLLYDIVRKLQDGA 85
           +P+  + L +  DG+L +  S  E  +  ++     D  G  TV +  + D  R+L D  
Sbjct: 1   MPILNNFLFEIVDGVLTLTTSDSETTMKASMQLDESDSNGRFTVPSRTILDATRELPDQP 60

Query: 86  QISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YVYSFELASSVLKNLVERT 144
                    +  ++   +G  NF  Q+    E+P  KE      S ++ S+VL N + R+
Sbjct: 61  LHFDINLETMAVQITYQNGVYNFTAQT--AEEYPRNKELAADAASIQMESAVLLNSIVRS 118

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FA   +E+R  +NGI+F + E+   L  VATDGH+L  ++   +    K  S ++ +K 
Sbjct: 119 LFATGQDELRPIMNGIYFDLKEDG--LAIVATDGHKLVKSKNTAIRSDVKR-SFVLAKKP 175

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
              +  IL+   + V+V   +    ++  +  +S RLI+G +PNY++VIP  N  ++ ++
Sbjct: 176 ASLLRNILTKDSTMVEVKFDDRNAEVHFPNGMLSCRLIEGNYPNYESVIPQDNPNQITLD 235

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDIC 323
              L   + RV   +S   Q ++L +    + ++ ++ D    A ESM   Y   PM+I 
Sbjct: 236 RKGLVSVLRRVLPFASESSQLIRLHVEQGLVELSSEDIDFATSAKESMVCDYVGIPMNIG 295

Query: 324 FNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           F    L E+++N+ SD+V+      +L   + +  +          +        ++MPM
Sbjct: 296 FKGGALGEVLNNLDSDDVM-----VQLADPSKAALVLPA------VQPENEEILMLIMPM 344

Query: 384 RI 385
            +
Sbjct: 345 ML 346


>gi|222107075|ref|YP_002547866.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
 gi|221738254|gb|ACM39150.1| DNA polymerase III beta subunit [Agrobacterium vitis S4]
          Length = 378

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 100/382 (26%), Positives = 172/382 (45%), Gaps = 18/382 (4%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
             V RS IL  L      ++ ++ IP+  +VLL  N   L +  +   +E+  +      
Sbjct: 7   FRVHRSQILPALNAVFEAVDPRSNIPILQNVLLSPNAERLRLSGTNMTVEVETSCDLLES 66

Query: 63  VCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
             G+ +T+S   L DIV+   + A+I F  ++  G +V +  G S F L +    +FP+ 
Sbjct: 67  ASGNPLTLSGKALLDIVKSFSEVAEIEFSFDDLRG-QVRVKSGRSRFLLATLHADQFPTI 125

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  S  +    L + + R  +A+   + R YL+GIF H  E + K+  VA DGH L
Sbjct: 126 ASLASGKSVAVDMPSLISAIARVKYALFDHKDRAYLSGIFIHPEEGENKIAVVAADGHNL 185

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
           AV      A     P  I+P KA+  I R+     +S +V +S+  I +    + ++ +L
Sbjct: 186 AVVRFPCEAGTT-FPGAIIPIKAIDAIRRLFGETKASAQVKISDEMIQICCHDVRLTSKL 244

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM-SSVRIQAVKLSLSSDKLCMTVD 300
           ID  +P+Y   IP  N   + V+  +L  AV RV ++    +   +KL  S+  L +++ 
Sbjct: 245 IDAVYPDYDVAIPKDNTSRIIVDAKHLINAVHRVCLVKKDDKRDTIKLVGSNGMLQVSMA 304

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D  +A+E +   YN   + I FN  YL + + +I + +     V   L + +S   + 
Sbjct: 305 ATDGEEAVEEIAAEYNGPQIRIGFNGDYLKDALSSIKTTD-----VAINLLTESSPGLLT 359

Query: 361 GKDKDSKNNKDNKVNAFYVLMP 382
                         +  YV+ P
Sbjct: 360 PT---------VGTDELYVVYP 372


>gi|188995650|ref|YP_001929902.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis
           ATCC 33277]
 gi|188595330|dbj|BAG34305.1| putative DNA polymerase III beta chain [Porphyromonas gingivalis
           ATCC 33277]
          Length = 377

 Score =  231 bits (590), Expect = 1e-58,   Method: Composition-based stats.
 Identities = 84/389 (21%), Positives = 167/389 (42%), Gaps = 19/389 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V  + +L+ L    R+I  ++T+P+   VL +     L + A+     ++  +  +
Sbjct: 1   MKFEVASNVLLQHLQLIARVIASRSTLPILESVLFELEGDQLRLTAADMANRMSTELTVN 60

Query: 61  --VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                 GS  V   +L + +++L D              E+  S+G  +F +Q       
Sbjct: 61  NVGGENGSFAVPERILLEPLKELPDQPISFEINMETKAAEIAYSNGHYSFVVQDASTYPV 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
            ++   E + S  + +  L + +  T FA + +E R  + G++    E+  KL  V +DG
Sbjct: 121 AASLSPEAIVS-VIPAEALLSGLSATLFATSQDERRPIMTGVYLDFFED--KLVFVGSDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
             L V + D   Q  +  +  +PRKA   +  +L   +  V ++   + +H+ + + ++ 
Sbjct: 178 QIL-VKQEDANVQSRRRSAFCLPRKACLLLRNVLPRLEGDVTLTYDSNYLHIELGNYTLR 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RL++G +PNY +VIP SN   ++V+   L     RVSI S+     +++  +   + ++
Sbjct: 237 ARLLEGRYPNYNSVIPTSNPFSVKVDRAQLLSGAKRVSIFSNPATSMLRMEFTPAGIRLS 296

Query: 299 VDNPDMG-KAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
            ++ D    A E +         M I F       I+  + S     +EV+  L     +
Sbjct: 297 ANDIDFSVAAEEHVPAECPADINMRIGFKSDVFQTILQGMPS-----EEVIMTLADQTRA 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I   +     +  N      +L+PM++
Sbjct: 352 GLILPAENAPGISLCN------LLLPMKL 374


>gi|258511078|ref|YP_003184512.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257477804|gb|ACV58123.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 369

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 166/368 (45%), Gaps = 15/368 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+S +   L    R+   +++  V   VL++A+ G +   A   ++ +   + AS
Sbjct: 1   MRCLIEQSVLEPTLSAMARVAPVRSSAAVLQGVLVEADRGQVTFSAYDYDVALRMTMEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGA-QISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           V   G + + A L  ++VR+L  G   I+    + L   +++    +   L  F   EFP
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGTVDIATIAPHHLSASIDVDATHAE--LHGFDPEEFP 118

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMAT-EEIRYYLNGIFFHINEEDLKLCAVATDG 178
              +   +   EL++  L   VE   +A A  +  R  L G+  H+  +D +L   AT+ 
Sbjct: 119 ELPDMRGIAPVELSAKTLVAAVESVGYAAAKRDPTRPILEGV--HVACDDGRLVWTATNA 176

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
            RL   +  +  ++       VPR+ + E+LR+L  ++ ++V+V  S S +    + + +
Sbjct: 177 LRLVQVKQAVDGELP--IRFTVPRRGLSELLRLLEDEEETTVQVYQSASYVMFAWDHVQL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RL  G +P+   VIP     E RV    L QAV+R +I++     +V L LS+  LCM
Sbjct: 235 YTRLYQGGYPDVTRVIPTEFIAECRVERDRLEQAVERTTILAENEHHSVTLELSNGALCM 294

Query: 298 TVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +    D G+A E + +   +   + +  N +++LE++  +         V  R       
Sbjct: 295 SSRARDRGQAREEVPILESSGEEVRVALNARFVLEMLRAMEGQV-----VRIRFAGRGRP 349

Query: 357 VFIRGKDK 364
           V     D 
Sbjct: 350 VCFHDDDD 357


>gi|111658628|ref|ZP_01409278.1| hypothetical protein SpneT_02000218 [Streptococcus pneumoniae
           TIGR4]
          Length = 341

 Score =  231 bits (589), Expect = 2e-58,   Method: Composition-based stats.
 Identities = 76/356 (21%), Positives = 160/356 (44%), Gaps = 27/356 (7%)

Query: 38  NDGLLEIKASGPEIEITGAIPASVDVCG-------SITVSAHLLYDIVRKLQDGAQISFF 90
            +  + +  S  +I I   I    +  G       SI + A    ++V  L D   ++  
Sbjct: 2   TNEGITLIGSNGQISIENFISQKNEDAGLLITSLGSILLEASFFINVVSSLPD---VTLD 58

Query: 91  KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
            +     ++ ++ G S   L+     ++P  +E        L + +LK ++  T FA +T
Sbjct: 59  FKEIEQNQIVLTSGKSEITLKGKDSEQYPRIQEISASTPLILETKLLKKIINETAFAAST 118

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210
           +E R  L G+ F +++   +L  VATD HRL+  ++ +         +++P +++ E   
Sbjct: 119 QESRPILTGVHFVLSQHK-ELKTVATDSHRLSQKKLTLEKNSDD-FDVVIPSRSLREFSA 176

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           + +    +V++  + ++I    E++S   RL++G +P+   +IP   +  +  N  NLRQ
Sbjct: 177 VFTDDIETVEIFFANNQILFRSENISFYTRLLEGNYPDTDRLIPTDFNTTITFNVVNLRQ 236

Query: 271 AVDRVSIMSS-VRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKY 328
           +++R  ++SS  +   VKL +    +   V +P++GK  E ++        + I FN  Y
Sbjct: 237 SMERARLLSSATQNGTVKLEIKDGVVSAHVHSPEVGKVNEEIDTDQVTGEDLTISFNPTY 296

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           L++ +  ++S++     V     S+     +   D D         +   ++ P+R
Sbjct: 297 LIDSLKALNSEK-----VTISFISAVRPFTLVPADTDE--------DFMQLITPVR 339


>gi|198274538|ref|ZP_03207070.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135]
 gi|198272592|gb|EDY96861.1| hypothetical protein BACPLE_00686 [Bacteroides plebeius DSM 17135]
          Length = 372

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 90/388 (23%), Positives = 182/388 (46%), Gaps = 21/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+I V ++ +L+ L    RII+ KNT+P   + L   ++ G +++ A      I+  +  
Sbjct: 1   MEILVSKTALLDKLKSVGRIIQPKNTLPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             D V  S   SA  L D ++++ +        E E    + + + +  F +      ++
Sbjct: 61  KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEKE----MIVKYANGKFTMPIEDGKQY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P    ++  +SF L+ + L   V +  F  A +E+R  +NG++F I+ E  K   V TDG
Sbjct: 117 PEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSYVGTDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+ E+       +    I+P K    +  ++      ++V ++ + +  + +S  + 
Sbjct: 175 SRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I+G +PNY+ VIP +  K + +   +L  A+ RVS+  ++    V L      L +T
Sbjct: 235 CRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLIT 294

Query: 299 VDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D  K+ E   +  +    ++I F   +L+E++++I S     +++   +   + + 
Sbjct: 295 AHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPS-----EDISISMTDPSRAA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D++       + +  Y+LMPM I
Sbjct: 350 VLSRCDEE-------ERSLTYLLMPMSI 370


>gi|189499002|ref|YP_001958472.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1]
 gi|189494443|gb|ACE02991.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides BS1]
          Length = 374

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 93/388 (23%), Positives = 184/388 (47%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T       E +  A + I  K   P   ++ L  ++ +L + A+  EI IT      
Sbjct: 1   MKFTTSIKHFQEAVNKAIQAIPNKVLDPRFENLHLNIDNRILTLFATDGEISITATTDVD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE--VNISHGDSNFYLQSFPESEF 118
               G + + A  + D +R + D       +  ++  +  VNI+     + +    ES+ 
Sbjct: 61  SSDKGDLGMRARTILDFLRSMYDTEVNFEIERQQMSEQGIVNIATDKGRYTIPCSFESKA 120

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
              +E+ +   F+L +  L N++++T FA + + +R  + G+ F I +    L A+ATDG
Sbjct: 121 EK-QEKTFDIEFDLTAGDLLNIIQKTTFACSIDGMRPAMMGVLFEIEQNL--LSAIATDG 177

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL          +++   I++P + +  + +++S  +  + +  +   I  + ESL + 
Sbjct: 178 HRLVRFRKTCEVSLSEKQRIVIPARVLSILQKLVSEGNIRISIDSANRSIRFSTESLVLD 237

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI  ++PNY+ VIP  NDK+L +   +   +V RV   S+  I  ++ S+S   + +T
Sbjct: 238 AALIVEQYPNYEAVIPLENDKKLSIERASFYDSVKRVGRFSN--IGDIRFSISPSTMKLT 295

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A E +   Y+  P++I FN K++   + +I      DD ++  L +  ++V
Sbjct: 296 AENINEGESAQEDLACSYDNEPIEIGFNSKFIEAALAHID-----DDSLIVELSTPTTAV 350

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++ +       +    N   ++MP+RI
Sbjct: 351 ILKPE------KEKENENMMILVMPVRI 372


>gi|242281239|ref|YP_002993368.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM
           2638]
 gi|242124133|gb|ACS81829.1| DNA polymerase III, beta subunit [Desulfovibrio salexigens DSM
           2638]
          Length = 387

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/394 (22%), Positives = 168/394 (42%), Gaps = 27/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R +++E L  +  II  K        + L+++ G L I ++   +E  G  PA 
Sbjct: 1   MYLKVNRDEVIEGLQKSASIIPAKTGAAYLRTIWLKSDGGNLRIMSTDSNLEFCGTYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G   V     YD+VRKL  G      K +  G+ + +  G   + L     + F  
Sbjct: 61  IMEEGLAGVQGRAFYDLVRKLPSGE--LTIKNDADGSSILVEQGSRKYKLPVNDPTWFQK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
                   +   +   L  L+ER  F ++ E+    +  +      +E    +     +G
Sbjct: 119 FSSFPSEGAVFWSGDFLLELIERIAFCISDEDSMEAIACMNIVPAADENGKFVEVCGLNG 178

Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235
           H+ A  +   D +  I     I++ +K + E+ + L+  +  +++SLSE R+        
Sbjct: 179 HQFARLKFINDDIHSILPEEGILIQKKYLVELKKWLTEDE--IELSLSEKRLFFKTADGK 236

Query: 236 -SMSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            + S+ L   ++PNY+N +   ND     ++V  + L  A+DR+SI ++   +      +
Sbjct: 237 ETFSLPLSYYQYPNYKNFLSKLNDDDVSRMKVEKSELSMALDRISIFNTDSNRCASFLFN 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L +     ++G A ESM + ++     I F  K L+EI+ +  SD+     + F L 
Sbjct: 297 PGELVLFSQGQEVGTATESMEIEFSGEMERIAFPTKNLIEILGHFQSDK-----INFTLT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +   + G D +             ++MPM++
Sbjct: 352 GAEAPCGVTGGDDNE---------YLVIVMPMKV 376


>gi|317486107|ref|ZP_07944954.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
 gi|316922630|gb|EFV43869.1| DNA polymerase III [Bilophila wadsworthia 3_1_6]
          Length = 382

 Score =  230 bits (587), Expect = 3e-58,   Method: Composition-based stats.
 Identities = 87/392 (22%), Positives = 169/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  TV++ +I+E L  A  II  +        + ++A   +L I A+   IE TG  PA 
Sbjct: 1   MLFTVKKENIIEGLQKAAGIIPTRAGAAYLRSLWIKAEGEVLTIMATDANIEFTGTYPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V+     D+VR+L  G      + ++    V +  G   + L +   + F S
Sbjct: 61  VKEPGLVGVNGRNFVDLVRRLPAGE--LRIRLDDATGTVILEQGRRTYKLPANDPTWFQS 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +    + +++R  F ++ +E    +  ++F    E   +     +GH+
Sbjct: 119 LAPFSSEGAVVWSGDFFQEIIDRVFFCVSDDESSDAIACLYFKPVGEG-HIEVCGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+         A++P   +++ RK VGE+ + L   +  ++V+L++ R+ +       +
Sbjct: 178 FALTRFTHDDLSARLPEDGVLIQRKYVGELRKWLGGDE--IEVNLTDKRLFVRSGDGHET 235

Query: 237 MSVRLIDGEFPNYQNV---IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +S+      +P+Y      +   +   L+++  +   A+DR+SI ++   +     LSS 
Sbjct: 236 LSLPRAGYAYPDYSPFMTRLASPDVSLLKLSRKDCLDALDRISIFNTESDRCTYFELSSA 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +  ++    D G A ES+ V YN     I F  K L+EI+ +  S      E+ F L  +
Sbjct: 296 EAMLSAQGQDTGSANESLEVSYNGSIGRIAFPTKNLMEILTHYQS-----GELTFTLTGA 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I G +           +   ++MPM+I
Sbjct: 351 EGPCGINGTEDP---------DYTVLIMPMKI 373


>gi|119355859|ref|YP_910503.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM
           266]
 gi|119353208|gb|ABL64079.1| DNA polymerase III, beta subunit [Chlorobium phaeobacteroides DSM
           266]
          Length = 376

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 91/388 (23%), Positives = 176/388 (45%), Gaps = 19/388 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T     + + +    + I  K   P   ++ L    G L + AS  E+ IT     S
Sbjct: 3   MKFTAPIRLLQDAVNRVSQAIPSKAIDPRFENIHLAIEPGKLTLFASDGEMSITAKSEIS 62

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118
            +  G+I++ A  L D +R + D       +  E      V+IS     + +  F ES+ 
Sbjct: 63  SEDTGNISIKARTLQDFLRSMYDTEVTFSIERQEISDHGTVSISTDKGKYKIPCFFESKM 122

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               E+ YV + +L S  L+ L+++T FA + + +R  + G+ F +  E   + AV+TDG
Sbjct: 123 -EIYEKNYVINLDLPSVELQYLIQKTIFACSVDGMRPAMMGVLFEL--ESSSITAVSTDG 179

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRL       V ++     I+V  + +  + ++   +   +++   +  +     ++ + 
Sbjct: 180 HRLVRCRKSTVIEVEDKQKIVVSARVLSILQKLPLHETVIIQIDQDKRFVRFTQNNVVID 239

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             LI   +PNY+ VIP  +DK++  + +N+  +V RV   SSV    +K+ L+   + + 
Sbjct: 240 ASLIVEPYPNYEAVIPVIHDKQVSCDRSNIYDSVKRVGRFSSV--GDIKMVLADSIIKVM 297

Query: 299 VDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            +N + G+ A E +   Y    + I FN K++   + +I      + E++  L S  ++V
Sbjct: 298 AENTNEGESAQEELPCSYTGEDITIGFNAKFIEAALAHID-----EKEIIIELKSPTTAV 352

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   +          +   ++MP+RI
Sbjct: 353 IFKPVQEKETG------SLIILVMPVRI 374


>gi|332702339|ref|ZP_08422427.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str.
           Walvis Bay]
 gi|332552488|gb|EGJ49532.1| DNA polymerase III, beta subunit [Desulfovibrio africanus str.
           Walvis Bay]
          Length = 387

 Score =  230 bits (586), Expect = 4e-58,   Method: Composition-based stats.
 Identities = 90/394 (22%), Positives = 165/394 (41%), Gaps = 27/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R DI+E L  +  II  K        + L+A DG L+I A+   +E  G+  A 
Sbjct: 1   MFVRVFRDDIIEGLQKSASIIPAKTGAAFLRTIWLKAEDGALKIMATDSNLEFCGSYKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G   V     YD++RKL  G       E        I  G   + L     S F  
Sbjct: 61  IVQEGLAGVQGRAFYDLMRKLPSGQITIRTDEATKN--AIIEQGSRKYKLPVNDPSWFQK 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDG 178
             +         +   L+ L++R  F ++ E+    +  +       E +  +     +G
Sbjct: 119 FSDYPESGGVFWSGDFLQELIDRVAFCISDEDTMEAIACMNMVGKDVEGEKVVEVCGLNG 178

Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235
           H+ A+     D +A +     I+V +K V E+ + L++ +  +++++S+ R+        
Sbjct: 179 HQFAMVRFVNDDIAGLLPENGILVQKKYVSELKKWLTADE--IELAISDKRLFCRTGDRR 236

Query: 236 -SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            + S+ L   ++P+YQ  +     +    L    T + +++DR+ I +S   + V    +
Sbjct: 237 ETFSLPLSYYQYPDYQGFLAKVQGNGASSLSFARTEMIESLDRIMIFNSETNRCVNFVFN 296

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             +L +     D+G+A ES+ V ++     I F  + L+EI+ + SS     D V F L 
Sbjct: 297 GQELTLFSQGQDVGQASESIQVDFSGELEKIAFPTRNLIEILGHYSS-----DRVSFTLT 351

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S     IR +            +   ++MPM+I
Sbjct: 352 GSEGPCGIRSEQD---------KDYLVIIMPMKI 376


>gi|258406589|ref|YP_003199331.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM
           5692]
 gi|257798816|gb|ACV69753.1| DNA polymerase III, beta subunit [Desulfohalobium retbaense DSM
           5692]
          Length = 393

 Score =  229 bits (585), Expect = 5e-58,   Method: Composition-based stats.
 Identities = 76/397 (19%), Positives = 153/397 (38%), Gaps = 30/397 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + + +  +L     A  II  K        + L+A D  L I ++  ++E +G+ PA 
Sbjct: 1   MLVRISKEQVLSGFQKAAGIIPMKTGAAFLRTIWLEAKDNHLTIMSTDSKLEFSGSYPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G I V     YD+ RKL  G       ++E    V +  G   + L +   S F  
Sbjct: 61  VETPGLIGVPGKKFYDLFRKLPPGEITLHAADSED--HVLLEQGRRKYKLPTNDASWFQP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +   LK ++ R  + +A +E    +N +          + A   +GH+
Sbjct: 119 FSAFPEDEAVLWSGDFLKEIINRITYCVADDESMNGMNCLKITPWPNSEAVEACGLNGHQ 178

Query: 181 LAVAEVDIV--------AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            A+                  +   I++ +  + E+ + LSS +  +  ++ + R+    
Sbjct: 179 FALMRFLNPDIHAILPQDDEGEDSGILIAKNYLLELKKWLSSDE--IYFTIDQKRLFFTN 236

Query: 233 E--SLSMSVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
              +   S+ L   +FP Y+  +    +   +L +    +  A++RV++ ++   +    
Sbjct: 237 GKKNEIFSLPLSTYKFPKYETFLSNFQNETSKLNIGRDEILDALERVALFNTENQRCSYF 296

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
              S ++ +     + G+A ES+ V Y+     I F    L+E++ +  S     + + F
Sbjct: 297 VFDSTEMIVYSQGQETGEATESLGVEYSGDLKKIAFPTTTLIEVLSHFQS-----EMITF 351

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     I GK+               V+MPM +
Sbjct: 352 EFTGVEGPCKITGKED---------SGYLVVVMPMHV 379


>gi|75761787|ref|ZP_00741722.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490720|gb|EAO54001.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 273

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 69/275 (25%), Positives = 133/275 (48%), Gaps = 16/275 (5%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS--------VDVCGSITV 69
            + +  + TIP+   + + A +  + +  S  +I I   IP          +   GSI +
Sbjct: 1   MKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVEEDGKEIVEIAQSGSIVL 60

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
            A    +IV+KL     +    EN   T+  I  G S F L     +E+P   + E  + 
Sbjct: 61  QAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNGLDSAEYPLLPQIEEHHV 117

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F++ + +LK+++ +T FA++T E R  L G+ + +   +L    +ATD HRLA+ +  I 
Sbjct: 118 FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELT--CIATDSHRLALRKAKIE 175

Query: 190 AQ---IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
                     ++++P K++ E+ +IL   +  V + ++E ++    + L    RL++G +
Sbjct: 176 GHNIADEFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNY 235

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
           P+   +IP  +  ++ VN     QA+DR S+++  
Sbjct: 236 PDTTRLIPAESKTDIFVNTKEFLQAIDRASLLARE 270



 Score = 36.8 bits (84), Expect = 6.8,   Method: Composition-based stats.
 Identities = 15/147 (10%), Positives = 41/147 (27%), Gaps = 7/147 (4%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITGA 56
             +    +  ++      +    T P+   V  +  +  L   A+        + +I G 
Sbjct: 118 FKIPTDLLKHMIRQTVFAVSTSETRPILTGVNWKVYNSELTCIATDSHRLALRKAKIEGH 177

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             A  +   ++ +    L ++ + L +  ++      E        H      L      
Sbjct: 178 NIAD-EFQANVVIPGKSLNELSKILDESEEMVDIVITEYQVLFRTKHLLFFSRLLEGNYP 236

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVER 143
           +       E      + +      ++R
Sbjct: 237 DTTRLIPAESKTDIFVNTKEFLQAIDR 263


>gi|158520111|ref|YP_001527981.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3]
 gi|158508937|gb|ABW65904.1| DNA polymerase III, beta subunit [Desulfococcus oleovorans Hxd3]
          Length = 377

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 87/393 (22%), Positives = 187/393 (47%), Gaps = 24/393 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++VE+ DI+E+L +   I  +++++ ++ ++L++     + + A+  E    G  PA+
Sbjct: 1   MKLSVEKKDIIEMLANVQGIAGKRSSLAITENILIKTGKEGISVSATDIETGFEGIYPAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN--FYLQSFPESEF 118
           ++  G+I ++A   Y+IV+K+ D   I   +E +   +++ +   S   + +       F
Sbjct: 61  IENEGTIAINARQFYEIVKKI-DSNIIYLREEKKQWIQISDTEDGSRLKYQIMGGETESF 119

Query: 119 PSTKEEEYVYSFELASSVLKNLVE-RTHFAMATEEIRYYLNGIFFHINEED--LKLCAVA 175
           P       V   ++ S+  KN++   T    +  E R ++ G      ++    K+  V+
Sbjct: 120 PQLPVIADVSYIDVNSADFKNMILWATVITSSGTEKRAHVIGANLEYIKDGKIKKIRMVS 179

Query: 176 TDGHRLAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           TDG RL   E          P  S I+P+KA+ E+ + L   + ++++   ++   +   
Sbjct: 180 TDGKRLTKTEYSYKKGEPDTPETSTILPKKALNELFKFLKD-EGTIQIGTRDNYFIVKNN 238

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +  + + L+ GE+PN + +        E+++N   L+  ++R+SI+++   + V  +   
Sbjct: 239 NEIIYINLLSGEYPNLETLFSDEKGRTEIKINRKKLKDMLERMSILTTDNYKGVIFTFEK 298

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + L +   NPD G++ E M++ Y++  +   FN  Y ++ ++ I      DDEV  +L  
Sbjct: 299 NILTINAQNPDRGESYEWMDIQYDKKQIKSMFNPDYFIDAVNLIE-----DDEVCLKLKE 353

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   + G       N         ++MPM+I
Sbjct: 354 DQAPCIVCGGKHPENIN---------IIMPMKI 377


>gi|332982992|ref|YP_004464433.1| DNA polymerase III subunit beta [Mahella australiensis 50-1 BON]
 gi|332700670|gb|AEE97611.1| DNA polymerase III, beta subunit [Mahella australiensis 50-1 BON]
          Length = 374

 Score =  229 bits (584), Expect = 6e-58,   Method: Composition-based stats.
 Identities = 85/392 (21%), Positives = 170/392 (43%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + +E+ ++  ++  A + +  ++ +PV   V L A   +L   A+     I  +  A 
Sbjct: 1   MYVEIEKDNLETVVATAGKALATRSVLPVLEGVKLSATGNMLTADATNTVTHIAVSKAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+I  +  LL DIV  L +G         +    V I+ G S   L + P  +FPS
Sbjct: 61  VTETGAIVTNGKLLIDIVSSLPEGPVTIKT---DNQGNVVITAGLSEITLATLPAKDFPS 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATDGH 179
               E    F + + VLK++++ T    A ++     L G+   +   +  L   A DG+
Sbjct: 118 PPAVETGAEFSIPADVLKSMIKGTSLFAAPDQSAQEILTGVAMELEGTN--LVMTAIDGY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLSM 237
           R+A     +        + I+P K++  + +IL   +  VK+SL    I  N     +  
Sbjct: 176 RIAQRCSVVTNTAGYNGTAIIPAKSLATLAKILPVGNGDVKISLGNKVIRFNTADGGIIF 235

Query: 238 SVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSD 293
           +  L++G++ +Y+ +I          + +   ++R AV R V++  +     +KL ++++
Sbjct: 236 TAVLLNGKYIDYKGLIDEALEDRKSRMTLFTEDMRSAVGRDVTVAQAGNSTLLKLEVTNN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   + D+ K  + + V        +  N KYL +++  I      DD++V    SS
Sbjct: 296 YLLLN-TSVDIAKVSDRIAVDCEGEDAKVGLNGKYLSDVLSVIG-----DDQIVLSFGSS 349

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + ++  ++             Y ++P+R+
Sbjct: 350 ADPILVQPVEEQE---------YLYYILPIRL 372


>gi|317155006|ref|YP_004123054.1| DNA polymerase III subunit beta [Desulfovibrio aespoeensis Aspo-2]
 gi|316945257|gb|ADU64308.1| DNA polymerase III, beta subunit [Desulfovibrio aespoeensis Aspo-2]
          Length = 389

 Score =  229 bits (584), Expect = 7e-58,   Method: Composition-based stats.
 Identities = 76/394 (19%), Positives = 163/394 (41%), Gaps = 25/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R +I+E L  +  II  K        + LQ  +G L I ++   +E  G+ PAS
Sbjct: 1   MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V     YD+V++L++       + +E    V +      +         F  
Sbjct: 61  IEEDGLAGVQGRAFYDLVKQLRNDQGELTLRTDEAKQNVLVEQKAKKYKFPVNDPEWFQK 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL--KLCAVATDG 178
                   +   +   L  ++++  F ++ E+    +  I+F   E     ++     +G
Sbjct: 121 FSSFPENGTVFWSGDFLHEIIDKIAFCISDEDSMEAIACIYFVPRESMGVKRVEVCGLNG 180

Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235
           H+ A+     D +  +     +++ +K +GE+ + L+S +  +++++S  R+        
Sbjct: 181 HQFAMFNFVNDDIYAMLPEEGVLIQKKYIGELKKWLTSDE--IELAISHKRLFFRTGDQR 238

Query: 236 -SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            + ++ L   ++PNY N +      N   L V    L  A+ RV++ ++   +    +  
Sbjct: 239 ETFTLPLSYYQYPNYNNFLAKLGDDNVSTLEVKRLELVDALSRVALFNTDSNRCAYFTFG 298

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
             ++ ++    + G A ES++  +      I F  + L+EI+++ +S       V F L 
Sbjct: 299 EGEVTISAQGQETGTARESIDATFAGDMKRIAFPTRNLIEILNHFNS-----PTVKFTLT 353

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +   + G D           +   ++MPM I
Sbjct: 354 GTEAPCGLTGVDD---------RDYNVIVMPMMI 378


>gi|91203533|emb|CAJ71186.1| similar to DNA polymerase III beta subunit [Candidatus Kuenenia
           stuttgartiensis]
          Length = 366

 Score =  228 bits (583), Expect = 8e-58,   Method: Composition-based stats.
 Identities = 82/384 (21%), Positives = 160/384 (41%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI      + +       ++       +   V L+  D   E+ A+  E+ +   IPA 
Sbjct: 1   MKILFSGDALHKGFSLTASVVPSSAMKQILQGVKLEVADNCAELTATDLEVLVKYRIPAK 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             +  G I + A    +I R+     +IS   E        +     +F +      +FP
Sbjct: 61  ACEGEGGIVLPASRANNIFREWAGNEEISVTVE---AGHCTLQSKGGSFKILGDDCLQFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + +     E+   +L  +VE+  +A+++ +     +GI   I  +   +  V +D +
Sbjct: 118 NITKTDVTSFVEIDGEILGKMVEKVAYAVSSIKALSIYSGISVKIFGD--TIIMVGSDMN 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV +  +        S IV  K +  + R +S    ++ V + ES+IH   E   +  
Sbjct: 176 RLAVVKRKVRNPENVSMSGIVGVKCLAFLQRFVSECKGTLMVGMGESQIHFIGEKGEVIS 235

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++PNY  VIP +NDK++ VN   L   V   S +++   + V+ SL+ +KL +  
Sbjct: 236 QLIEGKYPNYDEVIPKNNDKKIEVNRDELLSIVRMASFVTNDEYRVVEFSLTKNKLSIFS 295

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
              ++G+A   +   Y+       FN  Y+L+ +          + +   L   + +   
Sbjct: 296 SAANVGEAALEIAAQYDGPDYTNTFNPDYILDFLRASDC-----ETITIELGEIDDAALF 350

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
           +   ++             V+MP+
Sbjct: 351 KTGHEEIN-----------VMMPV 363


>gi|313678902|ref|YP_004056641.1| DNA polymerase III subunit beta [Oceanithermus profundus DSM 14977]
 gi|313151617|gb|ADR35468.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM
           14977]
          Length = 361

 Score =  228 bits (583), Expect = 9e-58,   Method: Composition-based stats.
 Identities = 88/386 (22%), Positives = 168/386 (43%), Gaps = 26/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ + +    E LG   RII  + + P   H+  +  +G L ++ S  E+++   +PA 
Sbjct: 1   MQVRLPKRTFAEALGMLERIIPGRASNPALTHLRFEVAEGGLRLQGSNGELDLELVVPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+      V   L+  +VR L         +E     ++ I  G     L +   +EFP 
Sbjct: 61  VEGEAVRLVPGQLIGQVVRNLPGELVELGLEEG----QLTIESGSFATRLTTADPAEFPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E      L +  L   + R  +A + E+ R    G+   ++    +L +VA+DG R
Sbjct: 117 LA-FEAETVARLPARELGRALARVRYAASGEDYRAIFRGVQLELHPT--RLRSVASDGFR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ ++++     +    +VP ++V EI+R+L   +  V + L    + L  E   M+  
Sbjct: 174 LALYDLELALDAER--KFVVPARSVDEIVRVLERTEGEVALGLLGGHLTLAAEGFRMAAA 231

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L++GEFP+Y+ VIP     E  ++ T L+ ++ RV +++      V L     +L +  +
Sbjct: 232 LMEGEFPDYERVIPPEFALEAEIDATALKDSLKRVKVLADRNNHRVDLVFEDGRLEVVAE 291

Query: 301 NPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             D G+ +E + V       M + +N +YL   +  I+       +   R   + S   I
Sbjct: 292 G-DYGRGVERLEVDARGEAQMVLAYNAEYLEGALGPIAG------KARLRFSGAASPSVI 344

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +               V++P+R+
Sbjct: 345 QDAED---------GGYLAVVVPLRV 361


>gi|319642216|ref|ZP_07996875.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
 gi|317386072|gb|EFV66992.1| DNA polymerase III [Bacteroides sp. 3_1_40A]
          Length = 372

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 89/388 (22%), Positives = 181/388 (46%), Gaps = 21/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           M+I V ++ +L+ L    RII+ KN +P   + L   ++ G +++ A      I+  +  
Sbjct: 1   MEILVSKTALLDKLKSVGRIIQPKNILPAYDNFLFVIDESGFIQVTAGEEGGRISTNVDG 60

Query: 60  SVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             D V  S   SA  L D ++++ +        E E    + + + +  F +      ++
Sbjct: 61  KADFVNRSFLASAKTLLDGLKEMSEQPLTISIYEKE----MVVKYANGKFTMPIEDGKQY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P    ++  +SF L+ + L   V +  F  A +E+R  +NG++F I+ E  K   V TDG
Sbjct: 117 PEMNIDDSSHSFLLSGNDLLYGVRQVQFCSANDELRPTMNGVYFDIDLE--KTSYVGTDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA+ E+       +    I+P K    +  ++      ++V ++ + +  + +S  + 
Sbjct: 175 SRLAMVELPASYTRKERAGFILPSKFAKLLSNLVPEDCLELEVKVNRTNVQFDFDSYRLV 234

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R+I+G +PNY+ VIP +  K + +   +L  A+ RVS+  ++    V L      L +T
Sbjct: 235 CRMIEGRYPNYRAVIPQNQSKRVVLKRNDLLAALKRVSVFCNISSSLVVLKFDKSSLLIT 294

Query: 299 VDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D  K+ E   +  +    ++I F   +L+E++++I S     +++   +   + + 
Sbjct: 295 AHDFDFSKSAEETVILQDGCEAIEIGFKSGFLIELVNSIPS-----EDISISMTDPSRAA 349

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +   D++       + +  Y+LMPM I
Sbjct: 350 VLSRCDEE-------ERSLTYLLMPMSI 370


>gi|256370586|ref|YP_003108411.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri SMDSEM]
 gi|256009378|gb|ACU52738.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri
           SMDSEM]
          Length = 371

 Score =  228 bits (582), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 181/385 (47%), Gaps = 18/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK     +++L  L     +I   N +P+  + L +  +  +L I  S  EI +T ++  
Sbjct: 1   MKFISSSNELLRSLKDILYVINITNKLPILENFLFKIKEKNVLTITVSDLEITMTISLNI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  +   +L +I++K+ +          E   ++ I   +  + L  F   E+P
Sbjct: 61  NSINFGSAVIPHKILLEILKKIPEQPLTFC---KEKENKLKILSQNGEYDLSIFSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                     F ++  +L N++  T FA+  +EIR  LNG+FF I  E+     V+T+ +
Sbjct: 118 KYSLLRNNNHFLISEKILLNIINNTLFAVGNDEIRPVLNGVFFDI--ENNISNFVSTNSN 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            L    +       K   +I+P+K +  +   L+  +++V +S ++       +   +  
Sbjct: 176 FLVKYSIK-DLSFNKEIRLIIPKKPLNILKYNLNDTNNNVYISYNDLNTSFFFKKKKIIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G +PNY++++    +K L +N      A+ RV++ S+     + L+ S  +  ++ 
Sbjct: 235 SLINGNYPNYKSLMKKKYNKILIINKNYFLNAIKRVTLFSNRLTYQIILNFSKKRSQISS 294

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + +   KA E +   Y+  P++I FN KYL+EI+ NI+      +++ F + ++NSS  
Sbjct: 295 FDINYNKKAFEYLFCNYDGEPLEIVFNSKYLIEILSNINC-----EDIKFEMLNNNSSCR 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I    K+SK  +        ++MP+
Sbjct: 350 ITPLMKNSKKEE-----ILILIMPL 369


>gi|283778831|ref|YP_003369586.1| DNA polymerase III subunit beta [Pirellula staleyi DSM 6068]
 gi|283437284|gb|ADB15726.1| DNA polymerase III, beta subunit [Pirellula staleyi DSM 6068]
          Length = 372

 Score =  228 bits (581), Expect = 1e-57,   Method: Composition-based stats.
 Identities = 77/388 (19%), Positives = 162/388 (41%), Gaps = 25/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI  +R  ++     A      ++   +  +V L   +    + A+  ++ +   +   
Sbjct: 1   MKIVCQRDKLVSAFQTAAMFAPARSPKAILQNVRLDVTNEGCTMMATDMDMGVRVNLEGV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G+  +       I+R+  D       K         +    S F LQS    EFP
Sbjct: 61  EVESTGTALLPVLHFGAILRESSDAT----LKIETTSRGTMVRGDRSEFRLQSEDPEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E      +++++LK ++ RT FA   E  RY L G+   ++ +  KL AV TDG 
Sbjct: 117 IVALFEETKYHNISAALLKQVITRTEFATDMESSRYALGGVLIELHGD--KLIAVGTDGR 174

Query: 180 RLAVAEVDIVA---QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           RLA  E    A         + I+   ++    R +S  D++V+++   S + L  E  +
Sbjct: 175 RLAKMEGPAEAVNGHTTGDNTTIIRTPSMRLFGRAISENDNTVQLAARSSDVLLKTERAT 234

Query: 237 MSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              RL++G FP +++V P   D  ++ +        + + ++++S   + +  + +   L
Sbjct: 235 FYSRLVEGRFPRWRDVFPRRQDAIKIDLTVGPFFSVLRQAAVVTSQDSRGIDFTFADGTL 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++    D G++   M + Y    + +  +++++ + +  +S ++     +V  ++S+ S
Sbjct: 295 TLSAVTSDAGQSRVEMPISYTGSAITVTLDHRFVADFLKVLSPEQ----TIVLEIESAES 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +      D              YV+MP+
Sbjct: 351 AAVFTADDS----------AYGYVVMPL 368


>gi|288916501|ref|ZP_06410878.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
 gi|288352101|gb|EFC86301.1| DNA polymerase III, beta subunit [Frankia sp. EUN1f]
          Length = 414

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 93/420 (22%), Positives = 172/420 (40%), Gaps = 59/420 (14%)

Query: 1   MKITVERSDILELLGHACRIIERKNT---------------IPVSCHVLLQANDGL---- 41
           M+ +VER  + +  G   R +  K T               +P   H    A+D      
Sbjct: 14  MRFSVERDVLADATGWVARHLP-KPTGGAQQVLTGLLLEALLP--DH----ASDHNSDHT 66

Query: 42  -----------LEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFF 90
                      LEI A   E+     + A V   G + V   LL D+VR L D   + + 
Sbjct: 67  AERSRGRGAPALEISAFDGEVAARAPVEAVVTEPGRVVVPGRLLADVVRNLPDAPVLVWA 126

Query: 91  KENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
                 T V I  G ++F + +    ++P           E+ +      V +   A   
Sbjct: 127 T----ATRVTIECGTASFRIPTLDSEDYPVLPVF-PPPVGEVDTLGFAAAVAQVAPAAGR 181

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEIL 209
           ++    L  +   I    L L  VATD +RLA+  +     +    ++  VP + + +I 
Sbjct: 182 DDSLPVLTAVRLEIARGGLSL--VATDRYRLALRTIPWQPTVDDPEAVAHVPARLLADIA 239

Query: 210 RILSSKDS-SVKVSLSES---RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
           R+ +S    ++ + + +S   R  L++      VRL++G FPNY+ ++P ++   +    
Sbjct: 240 RLPTSASRIALGMGVDDSGVARFGLSVNGRQTIVRLLEGTFPNYRRLLPEASAFTVTAQT 299

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
           + L  AV RV++++  R   ++ + S+ ++     +    +A E + + Y    + + FN
Sbjct: 300 SVLAAAVRRVALVA-TRTAPLRFTFSAGQVLAEAGDGGGAQACELVPLEYTGPELSVLFN 358

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +LL+ +  +  DEVV        + +S+S   + GKD           +  Y+LMP+R
Sbjct: 359 PAFLLDGLAAVEGDEVVFGFAAVDPNTTSSSPAVLTGKDD--------GEDYRYLLMPIR 410


>gi|332186935|ref|ZP_08388676.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
 gi|332012945|gb|EGI55009.1| DNA polymerase III, beta subunit [Sphingomonas sp. S17]
          Length = 374

 Score =  227 bits (580), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 95/392 (24%), Positives = 177/392 (45%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ VER  ++  +     ++E + TIPV  ++L++   G L +  +  +++++  +PA 
Sbjct: 1   MKVEVERDALMGAVRAVIDVVEARTTIPVLSNMLVEVEGGSLTLTGTDLDLQVSATVPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            ++    TV A  L   V  L  G       +      V +  G     L +   ++FP 
Sbjct: 61  GEM--KTTVDARKLQAAVDSLFKGKVTIAPIDGRAA--VTLKAGRGQRILPTLSANDFPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   SF + S+ L  +++    AM++EE RYYL GI+ H  E   +L   ATDGHR
Sbjct: 117 RGPIEDARSFTMPSADLSRILDTASVAMSSEETRYYLCGIYIHPYEG--RLRGAATDGHR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   EVD+ A    +  +I+PRKAVG + ++L+  D  V+V ++ + +   I  + +  +
Sbjct: 175 LVRVEVDLPAGAEMIKGVILPRKAVGHLRKLLAKHDGPVEVEVTTAAMAFQIGGVRVLTK 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-----RIQAVKL--SLSSD 293
           LID  FP+Y  VIP    +        +   V  V+ ++S      +++AV +  +++  
Sbjct: 235 LIDDTFPDYNRVIPEHVGRGFIGRPGVVDDTVSAVTAVTSPEGEKFKVRAVAMATAVAPG 294

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +      +     A+E ++V     P+    N  Y    + ++      +  +   +   
Sbjct: 295 ESEARAKDQSGTSAVEVLDVETIGEPIHFGVNRDY----LKSVVGLFRENGALTLDIRDP 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + + G+  D         +   V+MPMR+
Sbjct: 351 ACPIKLTGEHDD---------DLVAVVMPMRV 373


>gi|307564548|ref|ZP_07627088.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A]
 gi|307346706|gb|EFN92003.1| DNA polymerase III, beta subunit [Prevotella amnii CRIS 21A-A]
          Length = 374

 Score =  227 bits (579), Expect = 2e-57,   Method: Composition-based stats.
 Identities = 90/368 (24%), Positives = 163/368 (44%), Gaps = 19/368 (5%)

Query: 19  RIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDI 77
           ++I  KN I +    L +  +  L I AS  E  I   I     D   S  V+   + D 
Sbjct: 19  KVIANKNAIAILDCFLFEIKNNQLTITASDSENTIHCIIELDSADGEASFAVNNQTIIDA 78

Query: 78  VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE-YVYSFELASSV 136
           V++L +         NE    +   +G  NF +  F   E+P  +       +  + S++
Sbjct: 79  VKELPEQPLSLDVNMNEQKIYITYQNGSYNFPI--FSAEEYPRVQTVSSDATTIVIDSNI 136

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           L + + R+ FA A +E+R  +NG++F +  + L +  VATDG +L V       +  K  
Sbjct: 137 LVDAITRSLFATAQDELRPVMNGLYFDLLSDSLSI--VATDGQKL-VRNKIFTIKSDKES 193

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           + I+P+K    +  +LS     V +   +    ++    ++S RLI+G FPNY +VIP +
Sbjct: 194 AFILPKKPANLLKNVLSKDGGDVIIRYDQRSAEISYAEGNLSCRLIEGRFPNYNSVIPVA 253

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG-KAIESMNVYY 315
           N  ++ ++  +L  A+ RV   +S     ++  +    L +  ++ D    A ES+   Y
Sbjct: 254 NPNQIVIDRRSLIGAIRRVLPFASEASPLIRFRIEQGVLTLNAEDIDFSTSAKESVVCNY 313

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
               M I F    +L+I++N+       D+V   L   + +  +        N +   V+
Sbjct: 314 AGNAMSIGFKGTSMLDILNNLDG-----DDVTIELADPSRAGIVLP------NKQLENVD 362

Query: 376 AFYVLMPM 383
              ++MPM
Sbjct: 363 VLMLIMPM 370


>gi|29829904|ref|NP_824538.1| DNA polymerase III subunit beta [Streptomyces avermitilis MA-4680]
 gi|29607013|dbj|BAC71073.1| putative DNA polymerase III beta subunit [Streptomyces avermitilis
           MA-4680]
          Length = 376

 Score =  227 bits (579), Expect = 3e-57,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 153/392 (39%), Gaps = 27/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  VER    E +G A R +  ++ +PV   +LL A+ G L +     E        A 
Sbjct: 1   MEFQVERGAFAEAVGWAARALPARSPVPVLGGLLLTADAGRLSVSGFDFEAAARIGTDAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V    L DI R L DG  +S   E   GT   +  G + F L + P  E+P+
Sbjct: 61  TVAEGQVLVLGRRLLDICRVLPDGP-VSCVLE---GTRFTVEAGGTRFGLSTLPREEYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                      + +    + V +   A   ++    L G+   ++ + + L   A+D +R
Sbjct: 117 LP-VPPEPYGSVDADAFASAVSQVAVAAGRDDTLPVLTGVQLRLDGDAMTL--AASDRYR 173

Query: 181 LAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDSSVKVSLSE---SRIHLNIESL 235
            AV  +    + A   +   ++P + + +I R L+     V++         I      +
Sbjct: 174 YAVRTLGWQPEAAADGVVEALLPARRLLDIARSLARS-GDVRIGFDRAAGGLIGFEGGRM 232

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SD 293
              VRL++G  P Y ++   +      V C  L +AV RV++++      V+L  S    
Sbjct: 233 RTVVRLLEGRLPKYGSLFAVAGAAVAEVECGALAEAVRRVAVVA-EANSPVRLDFSAPDG 291

Query: 294 KLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +     D   A + +    +    +   FN  YLL+ +++  +       V   L  
Sbjct: 292 TVLLGAGYGDD-VAAQRLPAVLSGAEEVTAAFNPGYLLDALNSFEA-----PRVRLELLG 345

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +     +       + +  ++    ++LM +R
Sbjct: 346 AGQRTLLTAVADGGEPDTAHR----HLLMSVR 373


>gi|88608357|ref|YP_506066.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str.
           Miyayama]
 gi|88600526|gb|ABD45994.1| DNA polymerase III, beta subunit [Neorickettsia sennetsu str.
           Miyayama]
          Length = 372

 Score =  226 bits (577), Expect = 4e-57,   Method: Composition-based stats.
 Identities = 103/387 (26%), Positives = 186/387 (48%), Gaps = 31/387 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---IPA 59
           +TV++  +  +L +   +  RK+TI    HV ++     +E+  +  E+ +T +   I  
Sbjct: 9   VTVQQDALTRILANLVSVSTRKSTIAYLSHVRVRFTGTSVELTTTDNELSLTDSLLGIEG 68

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +D    I+V A  LY+IV++L     +    E      + +      F L       FP
Sbjct: 69  VIDAV--ISVDAFRLYEIVKRLPTDVGVVLSIE---KNNLVVRSRRIEFSLPYLDAKHFP 123

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              EEE +     A   +++L  +  FA +TE  R +LNG++F  + E  K+   ATD H
Sbjct: 124 LISEEEKIGQINFAVDEIRSLFNKVRFATSTESTRQHLNGVYFESDGE--KITVAATDVH 181

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSM 237
           RLAVA   ++ +     S I+P+K V E++++ S K+  + +   E  SRI +    + +
Sbjct: 182 RLAVA--TLMKKTGLKFSCIIPKKTVLEMIKLSSGKEVELFLHGREYVSRIKMVFGGVRL 239

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
           + +LI G FPN+  VIP S    L  +   L  +++RV ++S  + +A+ + +   +L +
Sbjct: 240 NSKLIAGTFPNFAAVIPHSFKSSLTFDRKALATSIERVGLVSPDQSRAISIGIKGKQLYL 299

Query: 298 TVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
              N D     ES+ +  +    + I FN+ YLL+I+  +      + EV  + +++ S 
Sbjct: 300 DASNSDASFGRESLELNEDIGEEISIYFNHIYLLDILLALD-----NKEVTMKFNNATSQ 354

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           V  +G +           +A YV+MPM
Sbjct: 355 VLFQGDE-----------SALYVVMPM 370


>gi|298372804|ref|ZP_06982794.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str.
           F0058]
 gi|298275708|gb|EFI17259.1| DNA polymerase III, beta subunit [Bacteroidetes oral taxon 274 str.
           F0058]
          Length = 377

 Score =  226 bits (576), Expect = 5e-57,   Method: Composition-based stats.
 Identities = 91/376 (24%), Positives = 171/376 (45%), Gaps = 17/376 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +++ R+++   L    ++I  K  IP++ + L +  + +L I A+  E  ++ AI   
Sbjct: 1   MNLSISRNELYNKLAIVQKVINSKTPIPIAENFLFKIENNVLTIVATDLETTLSTAINLE 60

Query: 61  VDVCGSITVS-AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL----QSFPE 115
            +  GSI  +    + +I+++L +        E     ++    G               
Sbjct: 61  -NCPGSIIFAMPPKIMEILKELPEQILSISIDEETFKIDLQNESGSYKSDFLGIGVGQNG 119

Query: 116 SEFPSTKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +FP  KE +  Y S ++ S +L N + RT FA A E+ R  + G+ F + + ++    V
Sbjct: 120 EDFPRPKELDTEYKSLKITSELLLNGISRTVFATAEEDSRPTMTGVLFDMFDNNITF--V 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD H+L    +     I    S I+P+K    +  IL   D  +++S  +  I   +  
Sbjct: 178 ATDAHKLVKYNMS-NINIGFENSFILPKKPALTLKNILVRTDELIEISFDDKNISFRMPE 236

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             M  R I+G++PNY  VI   N  +  V+  +L  A+ RV + SS     +  ++S +K
Sbjct: 237 YEMICRRIEGKYPNYNAVI-QKNPFKAIVDRQSLLSAIKRVKVFSSQGTGLIIFNISENK 295

Query: 295 LCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + ++  + D    A E +   Y++ PM+I F    L EI+ N+      D+++V  L  +
Sbjct: 296 IEVSTQDIDFSTSAKEIIVCQYSDQPMEIGFKAALLEEILSNMQ-----DNQIVIELADA 350

Query: 354 NSSVFIRGKDKDSKNN 369
           + +  I   + D   +
Sbjct: 351 SKAGIIVPFENDPDQD 366


>gi|282856281|ref|ZP_06265562.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455]
 gi|282585858|gb|EFB91145.1| DNA polymerase III, beta subunit [Pyramidobacter piscolens W5455]
          Length = 385

 Score =  225 bits (575), Expect = 6e-57,   Method: Composition-based stats.
 Identities = 88/393 (22%), Positives = 182/393 (46%), Gaps = 28/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+ + +++ ++    A R+   K+T+     VL  A++  + + ++  +  I      A
Sbjct: 1   MKLEITQNEFMKYWSMAERVTGTKSTMATLASVLCVADETGVMLNSTDLKTTIRVKAEGA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V   G   +   ++ ++ +K+   +  +   +NE GT   IS G S++   +    +FP
Sbjct: 61  TVLEPGKAILPLKVVGELFKKIV-ASPFTVEVDNEKGT---ISAGRSHYSFTTCNVGDFP 116

Query: 120 STKEEEYVYSFE--LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                     F    A  + + L E        E+   YL+G    I   +L++  VATD
Sbjct: 117 DLPSPRAAEEFTRVSAGELSRVLAEGGIAGAPNEDFPKYLSGGLMQIAGGELRV--VATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIE 233
           G RL++++  I    A   +  +++P K++ E  RIL+    D  V+V    +  + N+ 
Sbjct: 175 GRRLSLSKTMIENADAASSAREMLLPLKSLEEYQRILTGFAPDQEVEVLQDGAVTYFNMP 234

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            +  SVR ID +FPNY+ ++  ++  +++ + +   QA+DR++I+     + V L+LS  
Sbjct: 235 GVQYSVRCIDSKFPNYERILSNTSTTQMQADRSGFMQALDRINIVVGDNSRVVILTLSPG 294

Query: 294 -KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
             + ++   P++G+A ES++   +  P+ + FN  YL+  I      +     V    + 
Sbjct: 295 AAMELSGRAPEIGEANESVDASISGEPLKVAFNVGYLMAGIKAFHGSD-----VTLAFNG 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + I          +    +  Y+LMP+++
Sbjct: 350 AEGQMMIT---------RPGGTDFVYMLMPIKL 373


>gi|168702516|ref|ZP_02734793.1| DNA polymerase III, beta chain [Gemmata obscuriglobus UQM 2246]
          Length = 375

 Score =  225 bits (575), Expect = 7e-57,   Method: Composition-based stats.
 Identities = 83/394 (21%), Positives = 170/394 (43%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MK+T +R  +L         + ++ T PV  ++   A D  + + A   E+ I   +   
Sbjct: 1   MKVTCQRDSLLTACQLVQAAVAQRTTKPVLSNIKAVAQDDAITLVAYDTEVGIRYELRGI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V   GS  +    + ++V+ L++ +      +      V  + G   F + S   +EFP
Sbjct: 61  TVARAGSCILP---ITELVKILRESSDPEISLDAGKEAVVAKTSG-GKFEMPSLDVNEFP 116

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEI--RYYLNGIFFHINEEDLKLCAVAT 176
              E +    + E+ + VL+ ++ RT FA   ++   R+ L G+ +  + ++ +L  VAT
Sbjct: 117 DIPEFDDGGRYHEITAGVLRAMLRRTSFAADKKDTTARFSLTGVLWEADGKEARL--VAT 174

Query: 177 DGHRLAVAEVDIV--AQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           D  RLAV + + V    +  + +I +VP KAV  + + L+    +V+V L  +      E
Sbjct: 175 DTKRLAVCKGEAVVYGVVDDVKAIHVVPLKAVTLLEKNLTDDGETVRVGLRANDALFKTE 234

Query: 234 SLSMSVRLIDGEFPNYQNVI---PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++   L+ G+FP Y+++I        +++ +        V + +IM+      V ++ 
Sbjct: 235 RATIYTSLVQGKFPPYRDIIGKTTKEATQKVPLPVQGFLSRVRQAAIMTDDESMRVDMTF 294

Query: 291 SSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
               + M       G +  ++ +  Y+    +I F+  YL+E +  I ++      VV  
Sbjct: 295 DPGSVVMKARGAKTGASEVTLELPDYDGPHTEIAFDPSYLVEFLRAIENE----PTVVLE 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           + +   +      D           N  Y++MP+
Sbjct: 351 MSTGTRAALFTCGD-----------NYSYLVMPL 373


>gi|323699690|ref|ZP_08111602.1| DNA polymerase III, beta subunit [Desulfovibrio sp. ND132]
 gi|323459622|gb|EGB15487.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans
           ND132]
          Length = 389

 Score =  225 bits (575), Expect = 8e-57,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 163/394 (41%), Gaps = 25/394 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R +I+E L  +  II  K        + LQ  +G L I ++   +E  G+ PA+
Sbjct: 1   MFLKVNRDEIIEGLQKSANIIPAKTGAAFLRTIWLQCENGNLNIMSTDSNLEFMGSYPAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V     YD+V++L+          +E    V +      +         F  
Sbjct: 61  LEGEGLAGVQGRAFYDLVKQLRSDQGELTIHTDEANQNVLVEQKARKYKFPVNDPEWFQK 120

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE--DLKLCAVATDG 178
                   +   +   L  ++++  F ++ E+    +  I+    ++  +  +     +G
Sbjct: 121 FSTFPEDNTVYWSGDFLHEIIDKISFCISDEDSMEAIACIYMVPRDKAGNKTVEVCGLNG 180

Query: 179 HRLAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL- 235
           H+ A+     D +  +     +++ +K + E+ + L++ +  +++++S  R+        
Sbjct: 181 HQFAMLNFVNDDIYAMLPEEGVLIQKKYLAELKKWLTADE--IELAISNKRLFFRTGDKR 238

Query: 236 -SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            + ++ L   ++PNY N +      N   L VN  +L  A+ RV++ ++   +    S  
Sbjct: 239 ETFTLPLSYYQYPNYNNFLARLNDDNVSTLEVNRLDLVDALSRVALFNTDSNRCAYFSFD 298

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            +++ ++    + G A ES++  +      I F  + L+EI+++ +S       V F L 
Sbjct: 299 DNEVTVSAQGQETGTARESIDATFTGDMTRIAFPTRNLIEILNHFAS-----PTVKFTLT 353

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +   + G D           +   ++MPM I
Sbjct: 354 GTEAPCGLTGPDD---------KDYNVIVMPMMI 378


>gi|218134377|ref|ZP_03463181.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989762|gb|EEC55773.1| hypothetical protein BACPEC_02271 [Bacteroides pectinophilus ATCC
           43243]
          Length = 284

 Score =  224 bits (571), Expect = 2e-56,   Method: Composition-based stats.
 Identities = 64/285 (22%), Positives = 128/285 (44%), Gaps = 7/285 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+   +S++ + +    + I  + ++P+   +++ + +G ++  A+  E+ I   +   
Sbjct: 1   MKLVFSKSELSKGVNIVSKAIPTRTSMPILECIMIDSTEGQIKFTANDMELGIETIVEGD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I + A +  DIVRKL D        +N       I+  +S F +      +F  
Sbjct: 61  ILEKGKIAIDAKIFSDIVRKLPDNDITIQTDDN---YNALITCENSKFNISGKSGDDFSF 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E   S  L+   L+ LV +T F  A  +    + G  F + + +LK+  VA DGHR
Sbjct: 118 LPVIEKQKSIRLSQFALRELVNQTIFCTAPNDNNKMMAGELFEVIDSELKV--VALDGHR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSV 239
           +A+ +  +    A    ++VP K + EI +ILS   D  + +  S + I    +   +  
Sbjct: 176 IAIRKKKLEG-RADDVKVVVPGKTLNEISKILSTDADDMMNIYFSNNHILFEFDQTIVVS 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
           RLI+GE+     ++    +  +  N   +  ++DR +++     +
Sbjct: 235 RLIEGEYFKISQMLSSDYETRITANKKEMLGSIDRATLLIKESDK 279


>gi|303246809|ref|ZP_07333086.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ]
 gi|302491826|gb|EFL51706.1| DNA polymerase III, beta subunit [Desulfovibrio fructosovorans JJ]
          Length = 396

 Score =  223 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 78/403 (19%), Positives = 167/403 (41%), Gaps = 37/403 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V R+DI++ L  +  II  K        + L+A   +L I ++   +E TG   A 
Sbjct: 1   MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAAGDVLRILSTDSSLEFTGQYAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V     +++VRKL  G +I    + E G  + I  G   + L     + F +
Sbjct: 61  VTEEGLCGVQGKSFFELVRKLPPG-EIGLTLDAESGN-LLIKQGSRRYKLPVSDRNWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +   L+ L++R  + ++ E+    +  +F    +E  K+     +GH+
Sbjct: 119 FSPFPEEGAVTWSGDFLQELIDRVAYCISDEDTMEAMACMFLKPADE-AKVEVCGLNGHQ 177

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--- 235
            ++     D +  +     I++ +K V E+ R L++ +  +++++S+ R+    +     
Sbjct: 178 FSLVGFLNDDIHTMLPAEGILIQKKYVAELKRWLTADE--IELAISQKRLFFRTQEKDPE 235

Query: 236 ---------SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRI 283
                    + S+ L   ++P+Y   +          L +N   L  A++RV+I ++   
Sbjct: 236 NEAATPKIETFSLPLSYYQYPDYNTFVSKLATDGVSTLAINRDELMDALERVAIFNTDNN 295

Query: 284 QAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +         ++L +     + G+A E++   +      + F  K LL+I+ +  S +  
Sbjct: 296 RCAYFLFDGPNELSLRSQGQEAGEATETLECAFTGSLDKVAFPTKDLLDILGHFHSPK-- 353

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              V   +  +     I G++           +   ++MPM+I
Sbjct: 354 ---VTLAMTGAEGPCGITGEED---------GDGLVIIMPMKI 384


>gi|260892589|ref|YP_003238686.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
 gi|260864730|gb|ACX51836.1| DNA polymerase III, beta subunit [Ammonifex degensii KC4]
          Length = 386

 Score =  223 bits (570), Expect = 3e-56,   Method: Composition-based stats.
 Identities = 79/398 (19%), Positives = 157/398 (39%), Gaps = 35/398 (8%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQA---NDGL--LEIKASGPEIEITGA 56
           ++ V++ ++ ++L    R +  K  +P    VL++     +G   + + A+  + +I  +
Sbjct: 9   RVVVKKEELEKVLNICLRCVPSKPLMPQLGGVLVRGKFRENGSPAVTVTATDLDAQIVAS 68

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           + A ++  G + + A   +D+VR+L +    +         +V +S+      L      
Sbjct: 69  LQAHLEGEGELWLPAKETFDLVRRLPE---CTLELGQAGPEQVLVSYPGGEARLTGMNPE 125

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           EFP+  E+E  Y+  L    L N + R  +A A +     + G+    +     L   AT
Sbjct: 126 EFPAVNEQEDGYT-ALPGEGLTNALRRVLYAAAPDGPYTAITGVEISRSPSGG-LTFAAT 183

Query: 177 DGHRLAV---AEVDIVAQIAKMPSIIVPRKAVGE---ILRILSSKDSSVKVSLSESRIHL 230
           DGHRLAV    E D         S +VP   + E   + ++L       +V L       
Sbjct: 184 DGHRLAVFGDREEDGEGSQEDRKSWVVPAGYLREVLVLAKLL--GKEPDRVLLGRHTASF 241

Query: 231 NI-ESLSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   + RLID +FP+++  +P  +    L      L   ++R   ++      V L
Sbjct: 242 VWPGEAEFTCRLIDYKFPDWRQALPRESPATSLTTTVNTLLPCLERAKTIARANSVPVVL 301

Query: 289 SLSSD-KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            +    ++ +   + + G+  E ++       + + FN  YLLE +  + S      EV 
Sbjct: 302 LVKEGEEVRLEARS-EAGEFKERVDGRAEGEDVTVAFNAGYLLEALKVLDSAA----EVR 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             L    S   +     +             +++P+R+
Sbjct: 357 VGLYGPASPATVTVPGDE---------RYLALVLPVRL 385


>gi|212659782|gb|ACJ36975.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 266

 Score =  223 bits (568), Expect = 4e-56,   Method: Composition-based stats.
 Identities = 85/268 (31%), Positives = 151/268 (56%), Gaps = 7/268 (2%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 4   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 64  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM--PS 197
           L+ERT FAMA +++RYYLNG+     +   KL   A+DGH L +   ++    AK     
Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLVDFPKT--KLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   
Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           D+E++V    LR A+ R +I+S+ + + 
Sbjct: 239 DREVKVAREVLRDALQRAAILSNEKYRV 266


>gi|220903290|ref|YP_002478602.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp.
           desulfuricans str. ATCC 27774]
 gi|219867589|gb|ACL47924.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. ATCC 27774]
          Length = 384

 Score =  223 bits (568), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 163/392 (41%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV +  I+E L  A  II  K        + L+A DG L + ++   IE TG   A 
Sbjct: 1   MKLTVNKEQIIEGLLKAVAIIPAKAGAQYLRSIWLKAEDGGLSVMSTDANIEFTGRYQAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I V      D+VR+L  G  +     +E    + +  G   + L       F +
Sbjct: 61  VAQPGLIGVQGRAFVDLVRQLPSG--VLHLSLDEASGNLLVEQGRRTYKLPVSGAEWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +   L++L+++  F ++ ++    +  +         ++     +GH+
Sbjct: 119 FSSFPEENTVTWSGDFLQDLLDKVAFCISDDDAMDAIACLCMMPKGNG-RIDVCGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+          ++P   I++ +K + +I + L   +  +++S++  R++L   S   +
Sbjct: 178 FALVSFTHDELAERLPEEGILIQKKYLQDIKKWLGVDE--IELSITGKRLYLRSMSKAET 235

Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +S+     ++P+Y   +      +   + ++     +A+ R+ I ++   +   + LSS 
Sbjct: 236 LSLPRATHQYPDYSIFMSKLASEDMHPMTLDRKEAMEALGRILIFNTESDRCTYMDLSSG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +  ++    D+G A ES+ V Y      I F  + L++++ +  S +         L  +
Sbjct: 296 EALLSAQGQDVGSASESLEVTYGGDIKRIAFPTRNLMDVLAHFVSGKTD-----MMLTGA 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                IRG D           +   ++MPM++
Sbjct: 351 EGPCGIRGADDP---------DYTVIIMPMKV 373


>gi|78355049|ref|YP_386498.1| DNA polymerase III subunit beta [Desulfovibrio desulfuricans subsp.
           desulfuricans str. G20]
 gi|78217454|gb|ABB36803.1| DNA polymerase III, beta subunit [Desulfovibrio desulfuricans
           subsp. desulfuricans str. G20]
          Length = 384

 Score =  222 bits (567), Expect = 5e-56,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 166/392 (42%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + D+++ L  A  II  K        + L+A  G++ + ++   IE  G+  A 
Sbjct: 1   MYLKVFKEDVIDGLQKAANIIPAKTGAAYLRSIWLKAEAGMVHVLSTDSNIEFRGSYKAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V      D++RKL  G        +     + I  G   + L +   + F +
Sbjct: 61  VTEEGLAGVQGRAFVDLIRKLPAGEITLHL--DPKTGTLGIEQGRRKYTLPTNDTAWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +     S   +   L+ L+++  F ++ E+    +  +     +++  + A   +GH+
Sbjct: 119 FSDYPESGSVFWSGDFLQELIDKLSFCISDEDTMEAIACMSMKPRQDNA-IEACGLNGHQ 177

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+     D +  +     I+V +K + E+ + L + +  +++++   R+         +
Sbjct: 178 FAMQRFLNDDIHALLPAEGILVQKKYLMELKKWLGADE--IELNIDNKRLFFRTGDKRET 235

Query: 237 MSVRLIDGEFPNYQNVIPCSND---KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            S+ L   ++P+Y + +   +      L VN  ++  A+DRV I ++   +     L + 
Sbjct: 236 FSLPLSYYQYPDYTSFVSKLSTPDAGALEVNRKDMMAALDRVLIFNTDNNRCTYFDLEAG 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ ++    ++G A ES+   Y+     I F  + L+EI+++  S     D + F L  +
Sbjct: 296 EVSLSSQGQEVGSASESLEGTYDGSLKRIAFPTRNLIEIMNHYQS-----DSMRFTLTGT 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                + G+         N  +   ++MPM+I
Sbjct: 351 EGPCGLTGE---------NDPDYLVIVMPMKI 373


>gi|212659786|gb|ACJ36977.1| DNA polymerase III subunit beta [Xylella fastidiosa]
          Length = 264

 Score =  222 bits (565), Expect = 1e-55,   Method: Composition-based stats.
 Identities = 85/266 (31%), Positives = 150/266 (56%), Gaps = 7/266 (2%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVR 79
           ++ER+ T  +  ++L++ N+  L +  +  E+E+           G IT+ A  +Y+IVR
Sbjct: 4   VVERRQTRSILANLLIKVNEDQLSLTGTDLEVEMISKTKIEDPESGEITIPARKIYEIVR 63

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
            L D +Q+S ++ ++   ++ +  G S F L + P ++FPS  + E      +A  +LK 
Sbjct: 64  ALPDASQLSVYQSDD---KITLQAGRSRFTLATLPANDFPSIDKIEVTERIIIAEVLLKE 120

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM--PS 197
           L+ERT FAMA +++RYYLNG+     +   KL   A+DGH L +   ++    AK     
Sbjct: 121 LIERTAFAMAQQDVRYYLNGLLVDFPKT--KLPCGASDGHPLTLGGTELKQAKAKDLKRQ 178

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP   
Sbjct: 179 IILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPIGA 238

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRI 283
           D+E++V    LR A+ R +I+S+ + 
Sbjct: 239 DREVKVAREVLRDALQRAAILSNEKY 264


>gi|289523932|ref|ZP_06440786.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
 gi|289502588|gb|EFD23752.1| DNA polymerase III, beta subunit [Anaerobaculum hydrogeniformans
           ATCC BAA-1850]
          Length = 384

 Score =  220 bits (561), Expect = 3e-55,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 164/389 (42%), Gaps = 27/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M+I +    ++       R      T  +   + ++A +  + + A+  +  I   I   
Sbjct: 1   MRIKINDQKLIRSWQITERTSRGPKTSAILSGIYVKAYNNNVILMATDLKTSIKCLIHDV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G        + +I++KL  G  I         T+V I H  + F   ++P  EFP
Sbjct: 61  TIEEEGESIFPTKGVGEILKKLSHGFTIEAT-----NTKVTIRHEKNQFNFTTYPTEEFP 115

Query: 120 STKEEEYVY-SFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATD 177
                E    +  + S  L   +    F  +T E    YL+          LKL  +ATD
Sbjct: 116 KLPSSESAKLACRIKSKDLSRSIREGSFTGSTNEEFPQYLSSALIEFKRNSLKL--IATD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESL 235
           G RL+++E D++    +  SI++P + + E+ RILS   +DS +++   +S+ +   + +
Sbjct: 174 GKRLSLSEADLMEGSTEEDSILIPIRGINELERILSTLDEDSLIEILYDDSQCYFRGDDI 233

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DK 294
            +S+R ++  FP Y  +I       + ++   L  A+++V ++     + + + L     
Sbjct: 234 ELSIRRVESLFPPYDRIISSDRTTWMTIDRQALIDALEKVEVIVRDFNKVIIMDLKPAGN 293

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L ++    ++G+    M    +  P+ + FN  YLL+ +  I      D  V    +  +
Sbjct: 294 LSISAFAKNVGEGFVEMAAEVDGEPLKVGFNVAYLLQGLKAIG-----DSSVRMSFNGPH 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             + ++    D         N  Y+LMP+
Sbjct: 349 GQMRLQKISSD---------NFLYILMPV 368


>gi|110003909|emb|CAK98249.1| putative dna polymerase III, beta chain protein [Spiroplasma citri]
          Length = 372

 Score =  220 bits (560), Expect = 4e-55,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 171/389 (43%), Gaps = 24/389 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M + ++R  IL+ L    RII +K  IP    +L++     +    S  +  I   I   
Sbjct: 1   MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             ++   GS+ +    + +++RK++D        E   G  + I   + +  L +   ++
Sbjct: 61  DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVE---GNLIKIKANNFDSVLNTLNSAD 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P    E         S+VLK ++ +T FA+  +E R   NG+    ++ + +L   ATD
Sbjct: 118 YPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             RL+  ++D          +I+P K + EI R++S  D  +K+ +++  + + I +  +
Sbjct: 178 SFRLSCKKIDYSNNY--NFDVIIPGKFINEIGRLISENDQEIKMKITDKSVSVIINNTIV 235

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLC 296
             ++I+G++P+   VI  S +  L +N   L + ++R S++S+      V L +   K+ 
Sbjct: 236 QTKIIEGKYPDTSKVIATSFNTSLTINNRELIKIIERASVLSNETMTTIVTLKIKEQKVL 295

Query: 297 MTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +T    ++G   E +           I FN KY+L+ +    +      E+  ++     
Sbjct: 296 VTSFTQEIGNTEEEIREFKVEGTDQIIAFNSKYILDALKAFKTK-----EITIKMIDETK 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + I   D  +            +++P+R
Sbjct: 351 PLIITANDDQTLQQ---------LVLPIR 370


>gi|239904641|ref|YP_002951379.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1]
 gi|239794504|dbj|BAH73493.1| DNA polymerase III beta subunit [Desulfovibrio magneticus RS-1]
          Length = 397

 Score =  219 bits (559), Expect = 5e-55,   Method: Composition-based stats.
 Identities = 77/403 (19%), Positives = 163/403 (40%), Gaps = 36/403 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++TV R+DI++ L  +  II  K        V L+A    L I ++   +E TG   A 
Sbjct: 1   MQLTVFRNDIIDGLQKSSSIIPAKTGAAFLRTVWLEAAGSSLSILSTDSSLEFTGHYAAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V     +++VRKL  G +IS   +   G  + I  G   + L     + F  
Sbjct: 61  VAKEGLCGVQGKSFFELVRKLPPG-EISLTLDEASGN-LLIKQGSRRYKLPVSDRNWFQP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +   L+ ++ER  + ++ E+    +  ++     +  ++     +GH+
Sbjct: 119 FAAFPNEGAVTWSGDFLQEIIERVAYCISDEDTMEAMACMYLRPVADSARIEVCGLNGHQ 178

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--- 235
            ++     D +  +     I++ +K V E+ R L++++  V++++ + R+          
Sbjct: 179 FSLVGFLNDDIHAMLPPDGILIQKKYVAELKRWLTAEE--VELAMGQKRLFFRTTKRDEA 236

Query: 236 ---------SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRI 283
                    + S+ L   ++P+Y   +          L ++      A++RV+I ++   
Sbjct: 237 APEGQGSVETFSLPLSFYQYPDYNAFVSKLATDGVSTLAIDRLECIDALERVAIFNTDNN 296

Query: 284 QAVKLSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +          +L +     + G+A E++   +      + F  K L +I+ +  S +  
Sbjct: 297 RCASFLFDGPGELSLKSQGQEAGEATETLECVFTGDLDKVAFPTKDLTDILGHFESAK-- 354

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              V   L  +     IRG+D           ++  ++MPM+I
Sbjct: 355 ---VSLTLTGAEGPCGIRGEDD---------TDSLVIIMPMKI 385


>gi|307719923|ref|YP_003891063.1| DNA polymerase III subunit beta [Sulfurimonas autotrophica DSM
           16294]
 gi|306978016|gb|ADN08051.1| DNA polymerase III, beta subunit [Sulfurimonas autotrophica DSM
           16294]
          Length = 355

 Score =  219 bits (558), Expect = 6e-55,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 177/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MKITV +S +  +L HA   +E+K+T  ++ HV +  ++  L +KA+  EI  +      
Sbjct: 1   MKITVSKSILENILIHASPFLEKKDTSQITSHVYMNVSNSELTLKATDYEIGFLVSTDNL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  GSIT +     DIVR L+D       K +     + IS G SNF L +F  +EFP
Sbjct: 61  KIEKEGSITANGKKFLDIVRILKDDEINLEVKNDN----LLISQGHSNFKLPTFSYNEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E      + S  L   +++   A+ T   ++ LNG    I +  +     ATD  
Sbjct: 117 EFPAYEGKPRISIESHTLIESLKKITPAIDTNNPKFELNGALIDIQKNSINF--AATDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  V I  Q     SII+P+KA+ EI ++      ++++   E+ + ++ +  +   
Sbjct: 175 RLAV--VTIDNQSDNELSIIIPKKAIVEIQKLFFD---NIELYYDETNLIIHSQQYTFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP Y  +IP      L +    +  ++ +++ +S+     +K++  +D +    
Sbjct: 230 KLINGKFPEYSRIIPKETKYNLVLPKAIMIDSIKQITTISTD----LKITFMNDIISFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   ++       P  I  N KYLL+ +++I+S      E    L+  N    
Sbjct: 286 LSDDNIEAKTEISYNTGFSKPFSIAINSKYLLDFLNSINSS-----EFTIGLNEGNLPFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++              N   V+MP+
Sbjct: 341 LK------------DQNFITVVMPI 353


>gi|255994572|ref|ZP_05427707.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989]
 gi|255993285|gb|EEU03374.1| DNA polymerase III, beta subunit [Eubacterium saphenum ATCC 49989]
          Length = 363

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 91/366 (24%), Positives = 184/366 (50%), Gaps = 15/366 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ T  + DI E L    + I  + T+P+   +L++A +  + IK +  EI I   +   
Sbjct: 1   MRFTCSKKDIYEKLNLVIKSITNRTTMPILKGILIEAKEEEILIKGTDLEISILSKLKIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D  G I V+A L Y+I+RKL +G    F  E++   +++I + +S F L+   E +FP 
Sbjct: 61  NDEVGKIIVNAKLFYEIIRKLPEGNIEFFTDESK---KLHIKNLNSEFELEYLEEEKFPF 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            KE +    F     +L N+++++   ++ E  +  L G++  IN+  + L  V +DG+R
Sbjct: 118 AKEVKGEK-FSFDRDILCNMIKKSSSCVSRESTKNALRGLYIEINKTGISL--VGSDGYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +A+ + +I+ +  K   I+VP + +  I +IL  +  +V++ + E  I   ++   + ++
Sbjct: 175 IAITKENIINEQEK--DILVPVENILNIEKILREEKETVELIIGEKDIKFELKEGEIYLK 232

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLCMTV 299
           L++G + +Y+         E+ +N  +L  AV+R+ ++S   +   + L L ++ L +  
Sbjct: 233 LLEGTYIDYKKPFLEEMKTEVIINKNDLINAVERMYLLSPEKKNNKIILRLINNLLKIE- 291

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + D+G A E + +       +   N K+LL+ I NI       +E+  ++  +   + I
Sbjct: 292 TSSDIGYAKEEIILDKMGEDNEFAINCKFLLDAIKNIDG-----EELKLKIGKNERFILI 346

Query: 360 RGKDKD 365
              + D
Sbjct: 347 EEVEND 352


>gi|34556460|ref|NP_906275.1| DNA polymerase III subunit beta [Wolinella succinogenes DSM 1740]
 gi|34482174|emb|CAE09175.1| DNA POLYMERASE III, BETA CHAIN [Wolinella succinogenes]
          Length = 355

 Score =  219 bits (558), Expect = 7e-55,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 170/385 (44%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M I + +S +  +L +    +E+K+   ++ HV  +A    L  +A+  EI +       
Sbjct: 1   MNIVIPKSSLENILTNLQPFLEKKDASQITSHVYFKAQGSELTFQATDYEIGLLAKTESV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  TV+   + DIVR+L++G      +E      ++I    S+F L  F   EFP
Sbjct: 61  QIQKEGIATVNGKKILDIVRRLKEGEITLQSQEE----YLHIKQEKSSFKLPMFNAEEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    E +   E+ S  L   +++   A+     ++ LNG    I E       VATD  
Sbjct: 117 SFPSYEELPKIEINSMHLVQSMKKILPAIDNNNPKFELNGALLDIKE--YSFNFVATDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  +          ++IVP+KA+ EI ++       V++  SE+ + L  ++     
Sbjct: 175 RLAV--IKYENPSINKLALIVPKKAIVEIQKLFF---EEVELHYSETHLILKSKNYLFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI G++P+Y+ +IP      + +    + +A+  ++ +S+     +K++ + +++    
Sbjct: 230 KLISGKYPDYERIIPKETTHNMTLPKEKIIEAIKLINSLSND----IKVTFTKEEILFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + +  +A   + V       + +  N KYLL+ +  I +      E    ++ SN+   
Sbjct: 286 LSEENSEAKTQVEVETGITKELTLGINSKYLLDYLGQIDTS-----EFKIGINESNTPFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +            N   V+MP+
Sbjct: 341 LKSE------------NFSTVIMPI 353


>gi|267847165|gb|ACY80723.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 189/418 (45%), Gaps = 52/418 (12%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57
            I ++  +    L     I+E+KN   +  +V L   +      LEI A+  +I I   +
Sbjct: 19  NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78

Query: 58  PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
           P  +     SIT+    L +IV+K+       +   N+    V I  G+   F L + P 
Sbjct: 79  PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKIVQIKGGEYLEFNLATLPI 136

Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + FP  +E           +  L  ++E T FA++TEE RY LNGI+ H +++   L AV
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195

Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
           ATDGHRLA A+ +I              +I+PRK + E+ +I         +V + +  +
Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + V
Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325
            L L    + ++       KA E +                       Y     + + FN
Sbjct: 316 ILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAFN 375

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            KYLL+++   ++ ++           S S   I+ ++K          +A +++MP+
Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420


>gi|267847161|gb|ACY80721.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
 gi|267847163|gb|ACY80722.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  218 bits (556), Expect = 1e-54,   Method: Composition-based stats.
 Identities = 104/418 (24%), Positives = 189/418 (45%), Gaps = 52/418 (12%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57
            I ++  +    L     I+E+KN   +  +V L   +      LEI A+  +I I   +
Sbjct: 19  NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78

Query: 58  PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
           P  +     SIT+    L +IV+K+       +   N+    V I  G+   F L + P 
Sbjct: 79  PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKGGEYLEFNLATLPI 136

Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + FP  +E           +  L  ++E T FA++TEE RY LNGI+ H +++   L AV
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195

Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
           ATDGHRLA A+ +I              +I+PRK + E+ +I         +V + +  +
Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + V
Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325
            L L    + ++       KA E +                       Y     + + FN
Sbjct: 316 ILDLDHHAITISAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTVAFN 375

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            KYLL+++   ++ ++           S S   I+ ++K          +A +++MP+
Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420


>gi|28492969|ref|NP_787130.1| DNA polymerase III subunit beta [Tropheryma whipplei str. Twist]
 gi|28572177|ref|NP_788957.1| DNA polymerase III subunit beta [Tropheryma whipplei TW08/27]
 gi|28410308|emb|CAD66694.1| DNA polymerase III, beta chain [Tropheryma whipplei TW08/27]
 gi|28476009|gb|AAO44099.1| DNA polymerase III beta chain [Tropheryma whipplei str. Twist]
          Length = 377

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 160/386 (41%), Gaps = 18/386 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ V+R  +   +    R+I  +   P+   +L++A +  + +     E        A+
Sbjct: 1   MKLIVDRGLLSSSVNFVTRMIPARPPSPILSGMLIEAKNEKVTLSTFNYETSAKVEFSAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + V   L+  I +KL D   +   KE+E   +++++ G  N+ L   P +E+P 
Sbjct: 61  VIEGGKVLVPGTLISSISQKLPD-EPVEISKEDE---KISLTCGPVNYILNLMPIAEYPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E    + + S      V +   + A ++I   + GI   ++ E ++L    TD +R
Sbjct: 117 LPNLENAEQYRIPSEDFVKSVSQVTTSAAKDDISAVITGINLRLSNESIEL--TGTDRYR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL---SESR-IHLNIESLS 236
           +AV  ++ V+      S+IV  K + E+ + L + +S + V +    E++ I     + +
Sbjct: 175 VAVKTLNSVSGHPSDSSVIVSSKTLFEVSKTLGNLESEISVFIKNDGENKVIGFESGNKT 234

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           ++  LI G +P    +          +  ++  ++  RVS++   R + ++ S   + + 
Sbjct: 235 VTSLLISGNYPPVAKLFTEETGHYAILKTSDFLESTKRVSVVV-ERDEPIEFSFVKNTVT 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +      +  A E +        + I    ++L + +     D +        + +    
Sbjct: 294 IKGSG--IALASEKVECELFGDEISIMLRPQFLCDGLIACQEDFIKVAFTKPSVKNRPGP 351

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMP 382
           V I  K      +   K++  Y+L P
Sbjct: 352 VLITPK-----LSNKEKIDFKYLLQP 372


>gi|269791621|ref|YP_003316525.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans
           DSM 6589]
 gi|269099256|gb|ACZ18243.1| DNA polymerase III, beta subunit [Thermanaerovibrio acidaminovorans
           DSM 6589]
          Length = 379

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 173/389 (44%), Gaps = 29/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+ +E+   +     A R     ++   S  V+++++ G +E+ A+  +  +   +   
Sbjct: 1   MKLNIEKGPFIRAWNMAERCAGASSSG-ASSSVMIRSSAGRVELFATDMKTSLRCPVQGV 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D+ G   +   +L D+ +K  D +     +E        +  G S +   ++  SEFP
Sbjct: 60  QSDLDGEALLPVKVLGDLFKKCPDPSFTINLEEG----RGTMVSGRSRYRFSTYDVSEFP 115

Query: 120 STKEEEYVYSF-ELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATD 177
                     F  + +  L+N +     A +T +    YL+ ++     +   L  V+TD
Sbjct: 116 KFPSSASAAQFGTVKAQDLRNAISEGGIAASTSDEYPQYLSCVYLQ--GDQGALRIVSTD 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL 235
             RLA ++  +    ++  S+++P +A+ E+ R+LS   +D  V++ L +++ +   +  
Sbjct: 174 SRRLAYSKCPMEGSSSE--SMLLPMRAIRELDRMLSGLQEDGDVRILLDQAQAYFISDDF 231

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DK 294
             ++R +DG+FP Y+ +IP S    + V+ + +  A++R+ ++     + V ++LS    
Sbjct: 232 EFAIRRVDGKFPQYERIIPKSCTTFMEVSRSQMIGALERLDLVVRDFNKMVAVNLSPGGS 291

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             +   +P+ G A+E +       P+ I FN K+LL+ +  +      D  V    +   
Sbjct: 292 CTLRSRSPEFGDAVEEVEGAIEGEPLRIAFNVKFLLDGVKGLQ-----DSLVRLEFNGPG 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             + I+    DS           Y+L P+
Sbjct: 347 GHLCIKRIGSDS---------YLYLLAPL 366


>gi|283852477|ref|ZP_06369745.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B]
 gi|283572085|gb|EFC20077.1| DNA polymerase III, beta subunit [Desulfovibrio sp. FW1012B]
          Length = 392

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 76/399 (19%), Positives = 167/399 (41%), Gaps = 33/399 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V R+DI++ L  +  II  K        + L+A DG+L I ++   +E TG   A 
Sbjct: 1   MQLKVFRNDIIDGLQKSSGIIPAKTGAAFLRTIWLEAVDGVLRILSTDSSLEFTGQYTAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G   V     +++VR+L  G +I    +   G  + I  G   + L     + F +
Sbjct: 61  VTEAGLCGVQGKSFFELVRRLPPG-EIGLTLDAASGN-LLIKQGSRRYKLPVSDRNWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +   L+ L++R  + ++ E+    +  +F     E  K+     +GH+
Sbjct: 119 FSPFPEGAAVTWSGDFLQELIDRVAYCISDEDTMEAMACMFLKPA-EAAKVEVCGLNGHQ 177

Query: 181 LAVAEV--DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--- 235
            ++     D +  +     I++ +K V E+ R L++ +  +++++S+ R+    +     
Sbjct: 178 FSLVAFLNDDIHAMLPPEGILIQKKYVAELKRWLTADE--IELAISQKRLFFRTQEKDET 235

Query: 236 -----SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
                + S+ L   ++P+Y   +          L ++   L  A++RV+I ++   +   
Sbjct: 236 SAKVETFSLPLSYYQYPDYNTFVSKLATDGVSTLTIDRLELVDALERVAIFNTDNNRCAS 295

Query: 288 LSLS-SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
                  +L +     + G+A E++   +      + F  K +++I+ +  S +     V
Sbjct: 296 FLFDGPGELSLRSQGQEAGEASETLECAFTGSLDKVAFPTKDIIDILGHFHSPK-----V 350

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              L  +     I G++           ++  ++MPM+I
Sbjct: 351 TLTLTGAEGPCGIAGEED---------ADSLVIIMPMKI 380


>gi|189184479|ref|YP_001938264.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str. Ikeda]
 gi|189181250|dbj|BAG41030.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Ikeda]
          Length = 432

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 189/418 (45%), Gaps = 52/418 (12%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57
            I ++  +    L     I+E+KN   +  +V L   +      LEI A+  +I I   +
Sbjct: 19  NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78

Query: 58  PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
           P  +     SIT+    L +IV+K+       +   N+    V I  G+   F L + P 
Sbjct: 79  PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKVGEYLEFNLATLPI 136

Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + FP  +E           +  L  ++E T FA++TEE RY LNGI+ H +++   L AV
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195

Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
           ATDGHRLA A+ +I              +I+PRK + E+ +I         +V + +  +
Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + V
Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325
            L L    + ++       KA E +                       Y     + I FN
Sbjct: 316 ILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFN 375

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            KYLL+++   ++ ++           S S   I+ ++K          +A +++MP+
Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420


>gi|229156276|ref|ZP_04284372.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342]
 gi|228627151|gb|EEK83882.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 4342]
          Length = 316

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 79/337 (23%), Positives = 153/337 (45%), Gaps = 31/337 (9%)

Query: 52  EITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
           +IT  + A     G+I V A    +I++K+     I    E      + I   +    L 
Sbjct: 5   QITTTLKA-----GTIVVPAKYFIEIIKKMPSDIVIKSKNEQT----ITIQSEEITLNLN 55

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            FP +EFP+  + +     ++ +  L +  ++T FA+A  E R  L G+   +  +  KL
Sbjct: 56  GFPANEFPNVPQIDDHAEIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIEL--DHNKL 113

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
              ATD HRLA+ E  I   +    + IVP   + E+L++++S    V + LSES I   
Sbjct: 114 ICAATDSHRLAIRETLISTNV--KANCIVPSATINELLKLMNSNLEFVSIYLSESHIIFT 171

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL 290
             + ++  RLI+G++PN  ++IP      + ++   + Q VDR S+++S      V L +
Sbjct: 172 FGTTTLYSRLIEGKYPNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWANNNVNLEI 231

Query: 291 -SSDKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            +   + ++ +   +GK  E+  ++    E   +I F+ +++L+ +  I      ++ V 
Sbjct: 232 VNESTIKVSSNASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIK-----EETVT 286

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                S   + +      +         A +++ P+R
Sbjct: 287 LSFSGSMRPILVEAGTHSA---------AIHLISPVR 314



 Score = 49.8 bits (118), Expect = 7e-04,   Method: Composition-based stats.
 Identities = 34/248 (13%), Positives = 85/248 (34%), Gaps = 17/248 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITG 55
           +I +E   +++        + +  + PV   V ++ +   L   A+        E  I+ 
Sbjct: 73  EIQIETKQLIDAFKQTVFAVAKNESRPVLTGVHIELDHNKLICAATDSHRLAIRETLIST 132

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            + A+        V +  + ++++ +    +      +E               L     
Sbjct: 133 NVKAN------CIVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIEGKY 186

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI-NEEDLKLCAV 174
               S    E+     +    +   V+R+    +        N +   I NE  +K+ + 
Sbjct: 187 PNISSLIPNEFQTVINIDRQRMLQGVDRSSLLASEWAN----NNVNLEIVNESTIKVSSN 242

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A+   +++  +     Q  K  +I    + + + LR +  +  ++  S S   I +   +
Sbjct: 243 ASQIGKISETQQIDAIQGEKQFNISFDGRFMLDALRAIKEETVTLSFSGSMRPILVEAGT 302

Query: 235 LSMSVRLI 242
            S ++ LI
Sbjct: 303 HSAAIHLI 310


>gi|71062229|gb|AAZ21232.1| DNA polymerase III [Candidatus Pelagibacter ubique HTCC1062]
          Length = 296

 Score =  217 bits (554), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 95/313 (30%), Positives = 169/313 (53%), Gaps = 20/313 (6%)

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           +YDI+RK   G +I+    +   +++ +    S F L     SEFP T E      F + 
Sbjct: 1   MYDIIRKFSSGKKINLSLTD--VSKLQVESEKSVFNLNCISASEFPLTDENFNQNEFSIK 58

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHIN--EEDLKLCAVATDGHRLAVAEVDIVAQ 191
           S  L  L+ +  F+++ +E R+YL+GIFFH    E+   L A ATD HR++++++ +  Q
Sbjct: 59  SKQLLKLLNKCKFSVSNDETRHYLSGIFFHQTQTEDKNFLTAAATDSHRMSISKIRLDQQ 118

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
           +   P II+P+K + ++  +L S D  VK+S  +S+I   + +  +  +LIDG+FPNY  
Sbjct: 119 VDFEP-IILPKKTIFQLCSLLESYDGDVKISNIKSKIKFELNNSILISKLIDGKFPNYIQ 177

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311
           VIP +N K+L ++      +VDRV+ +S  +   VK +LS D L ++V+N + G   ES+
Sbjct: 178 VIPKNNQKKLEIDLKLFLDSVDRVASVSLDKKDGVKFNLSKDVLNLSVNNTNSGDGKESL 237

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
            V ++   ++I FN +YL+++   +  D+     +    + + S   I+           
Sbjct: 238 TVKFD-HDLEISFNSRYLIDVASQLDGDK-----IEIFFNDTGSPALIKDP--------- 282

Query: 372 NKVNAFYVLMPMR 384
              ++ +V+MPM+
Sbjct: 283 GDFDSIFVVMPMK 295


>gi|267847159|gb|ACY80720.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
 gi|267847167|gb|ACY80724.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  217 bits (553), Expect = 2e-54,   Method: Composition-based stats.
 Identities = 105/418 (25%), Positives = 189/418 (45%), Gaps = 52/418 (12%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57
            I ++  +    L     I+E+KN   +  +V L   +      LEI A+  +I I   +
Sbjct: 19  NIKLDTKNFSRALNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78

Query: 58  PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
           P  +     SIT+    L +IV+K+       +   N+    V I  G+   F L + P 
Sbjct: 79  PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKVGEYLEFNLATLPI 136

Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + FP  +E           +  L  ++E T FA++TEE RY LNGI+ H +++   L AV
Sbjct: 137 NLFPVIEELTDADFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195

Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
           ATDGHRLA A+ +I              +I+PRK + E+ +I         +V + +  +
Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L ++++RVS ++  + + V
Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIERVSTIAVEKSKIV 315

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325
            L L    + ++       KA E +                       Y     + I FN
Sbjct: 316 ILDLDHHAITISAYGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFN 375

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            KYLL+++   ++ ++           S S   I+ ++K          +A +++MP+
Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQLEEK--------NTSATFIIMPV 420


>gi|298376463|ref|ZP_06986418.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
 gi|298266341|gb|EFI07999.1| DNA polymerase III, beta subunit [Bacteroides sp. 3_1_19]
          Length = 370

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 99/388 (25%), Positives = 168/388 (43%), Gaps = 22/388 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I++ ++ +L  L    +II  K++ P+ CH L +  +G L I  S  E  IT ++   
Sbjct: 1   MTISISKTALLSRLQLLAKIIPAKSSTPILCHFLFKTREGRLFITGSNSEGRITTSLECI 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   SI V   LL + +R L +         N+   E+ I +    F +  +  S +P 
Sbjct: 61  FDEEISICVPTSLL-EGLRNLPEQPI--DIIINKDTREIRIKYHGGKFEVVGYDPSTYPG 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  E + S  L++  L N + +       ++IR  L+ +F     E   +C V  DGH 
Sbjct: 118 KRSIEVLDSVSLSAEDLFNGISKVINLAGNDDIRPVLSSVFIETEPE--TVCFVGADGHG 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRIHLNIESLSMS 238
           +         Q+ K+ S+I+ R     +  IL  SS +  ++V    S + L      +S
Sbjct: 176 MGFLRKGNDRQVGKI-SVIISRPIASVLKAILPASSDNMEMRVGADWSDVIL--NDYEIS 232

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            R ++G +PN++ V+P +N  EL V+   L  A+ R S+ S+     + L +  DKL + 
Sbjct: 233 FRNVEGRYPNWKAVVPKANKLELLVDTGQLIGAIKRTSVFSNKASCLIVLRIIRDKLTVF 292

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             + D    A E++ V +N     I      LLEI+  I      D          + ++
Sbjct: 293 AQDIDFSTSAEETLEVDFNGNEFSIGIKGSLLLEILSCID-----DGRTRLSFSEPSRAI 347

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            I  +      N+       Y+LMPM I
Sbjct: 348 LITPE------NQSGNEELTYLLMPMTI 369


>gi|148283999|ref|YP_001248089.1| DNA polymerase III subunit beta [Orientia tsutsugamushi str.
           Boryong]
 gi|146739438|emb|CAM79068.1| DNA polymerase III beta chain [Orientia tsutsugamushi str. Boryong]
 gi|267847155|gb|ACY80718.1| chromosomal replication initiation protein [Orientia tsutsugamushi
           str. Boryong]
 gi|267847157|gb|ACY80719.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
 gi|267847169|gb|ACY80725.1| chromosomal replication initiation protein [Orientia tsutsugamushi]
          Length = 432

 Score =  217 bits (552), Expect = 3e-54,   Method: Composition-based stats.
 Identities = 107/418 (25%), Positives = 190/418 (45%), Gaps = 52/418 (12%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL----LEIKASGPEIEITGAI 57
            I ++  +   +L     I+E+KN   +  +V L   +      LEI A+  +I I   +
Sbjct: 19  NIKLDTKNFSRVLNFCMPILEKKNVDQILSNVKLTHINDTVEKRLEISATDGDIFIYQKL 78

Query: 58  PASVDV-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-NFYLQSFPE 115
           P  +     SIT+    L +IV+K+       +   N+    V I  G+   F L + P 
Sbjct: 79  PIKISKNDISITLPLQALNEIVKKIPHDEFTIYC--NQDNKMVQIKGGEYLEFNLATLPI 136

Query: 116 SEFPSTKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           + FP  +E   V       +  L  ++E T FA++TEE RY LNGI+ H +++   L AV
Sbjct: 137 NLFPVIEELTDVDFIIHVTAMQLAQMIEYTKFAISTEETRYNLNGIYLH-SKDYKSLIAV 195

Query: 175 ATDGHRLAVAEVDIVA-----QIAKMPSIIVPRKAVGEILRILSS---KDSSVKVSLSES 226
           ATDGHRLA A+ +I              +I+PRK + E+ +I         +V + +  +
Sbjct: 196 ATDGHRLASAKCNIDTFKTNISNNDGFGVILPRKTITELYKIFKEPSINQYNVIIKVKSN 255

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           +I  + +++++  +LIDG FP Y+  IP +N K++ +N  +L +++DRVS ++  + + V
Sbjct: 256 KIQFDCQNITIISKLIDGNFPEYELFIPANNTKKIILNSNDLSESIDRVSTIAVEKSKIV 315

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESM--------------------NVYYNECP-MDICFN 325
            L L    + +        KA E +                       Y     + I FN
Sbjct: 316 ILDLDHHAITIRAHGNAQCKAKELLLRHQHNNKNDQHQSSKQEVEKYEYIGDDQLTIAFN 375

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            KYLL+++   ++ ++           S S   I+ ++K          +A +++MP+
Sbjct: 376 AKYLLDVLSVCNNIKIP-----IEFKDSISPALIQFEEK--------NTSATFIIMPV 420


>gi|146319851|ref|YP_001199562.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33]
 gi|145690657|gb|ABP91162.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33]
          Length = 310

 Score =  216 bits (551), Expect = 4e-54,   Method: Composition-based stats.
 Identities = 68/306 (22%), Positives = 137/306 (44%), Gaps = 13/306 (4%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ ++  L+ L    R I  KN IP+   V +      + +  S  +I I   I    
Sbjct: 3   QFSINKNIFLQALSITKRAISTKNAIPILSTVKITVTSEGITLTGSNGQISIEHFISIQD 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   GSI + A    ++V  + D        E +   ++ ++ G S   L+   
Sbjct: 63  ENAGLLISSPGSILLEAGFFINVVSSMPDLVLDFNEIEQK---QIVLTSGKSEITLKGKE 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + VLK  +  T FA +T+E R  L G+ F + E    L  V
Sbjct: 120 AEQYPRLQEVPTSKPLVLETKVLKQTINETAFAASTQESRPILTGVHFVLTENKN-LQTV 178

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD HR++  ++ +        ++++P +++ E     +    +V+V  S ++I    E 
Sbjct: 179 ATDSHRMSQRKLVLDTS-GDDFNVVIPSRSLREFTADFTDDIETVEVFFSNNQILFRSEH 237

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSD 293
           +S   RL++G +P+   +IP   +     +  NLR +++R  ++S+  +   V+L ++++
Sbjct: 238 ISFYTRLLEGTYPDTDRLIPTEFNTTAIFDTANLRHSMERARLVSNATQNGTVQLEIANN 297

Query: 294 KLCMTV 299
            +   V
Sbjct: 298 VVSAHV 303


>gi|227876543|ref|ZP_03994654.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243]
 gi|306817504|ref|ZP_07451248.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris
           ATCC 35239]
 gi|227842857|gb|EEJ53055.1| DNA polymerase III beta subunit [Mobiluncus mulieris ATCC 35243]
 gi|304649728|gb|EFM47009.1| DNA-directed DNA polymerase III beta subunit [Mobiluncus mulieris
           ATCC 35239]
          Length = 352

 Score =  216 bits (550), Expect = 6e-54,   Method: Composition-based stats.
 Identities = 72/362 (19%), Positives = 152/362 (41%), Gaps = 22/362 (6%)

Query: 31  CHVLLQANDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISF 89
             V + A    +E  +    +     + P  +   G++ V   LL +  R L +  +IS 
Sbjct: 2   AGVHIAATSAGVEFASYDYNVSARVTVEPLELITEGTVVVDGKLLSETARALPN--KISE 59

Query: 90  FKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMA 149
                    ++I+ G  +  L   PE ++P   +   V      + V  + + +   A +
Sbjct: 60  VSFKTEDNYLHITCGSFHQQLLVMPEEDYPQLPQLPQVVGQV-DAEVFSHSISQVSIAAS 118

Query: 150 TEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM-PSIIVPRKAVGEI 208
            +E    L GI   I  E  KLC +ATD +R+A+ E+   A   ++   ++V  K + + 
Sbjct: 119 RDETLPLLTGISLEIRPE--KLCVLATDRYRMALKEIPWQATNPQINQDLVVKAKNIADA 176

Query: 209 LRILSSKDSSVKVSLSESR-----IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            + ++S   S+ +++         + L+      + ++ DG +P+ + + P   +    V
Sbjct: 177 AKNIASS-GSISLAVDGEDESSALVGLSAGGRLFTSQVNDGNYPDVRRIFPEPINIVAVV 235

Query: 264 NCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
             ++   A  RV+I+S ++  Q + LS +   L     +     A +++ V  N   + +
Sbjct: 236 KVSDFVAAAKRVAIVSANLSNQQITLSFTQGTLEFRAGSGGENTATDAIPVQLNGADISV 295

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            FN + L+E +  +      +  V          V I G+ ++     D+ ++  Y++MP
Sbjct: 296 SFNSRMLIEGLSVVD-----EPYVRLSFKDETKPVIITGQKEE---TGDDSLDFQYLIMP 347

Query: 383 MR 384
           +R
Sbjct: 348 IR 349



 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 34/210 (16%), Positives = 59/210 (28%), Gaps = 23/210 (10%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP------EIEITGAIP 58
           V+       +        R  T+P+   + L+     L + A+        EI      P
Sbjct: 101 VDAEVFSHSISQVSIAASRDETLPLLTGISLEIRPEKLCVLATDRYRMALKEIPWQATNP 160

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFY--LQSFP 114
             ++    + V A  + D  + +     IS     E+E    V +S G   F   +    
Sbjct: 161 -QINQD--LVVKAKNIADAAKNIASSGSISLAVDGEDESSALVGLSAGGRLFTSQVNDGN 217

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA- 173
             +      E       +  S      +R     A    +     I     +  L+  A 
Sbjct: 218 YPDVRRIFPEPINIVAVVKVSDFVAAAKRVAIVSANLSNQQ----ITLSFTQGTLEFRAG 273

Query: 174 -----VATDGHRLAVAEVDIVAQIAKMPSI 198
                 ATD   + +   DI         I
Sbjct: 274 SGGENTATDAIPVQLNGADISVSFNSRMLI 303


>gi|212703754|ref|ZP_03311882.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098]
 gi|212672722|gb|EEB33205.1| hypothetical protein DESPIG_01802 [Desulfovibrio piger ATCC 29098]
          Length = 384

 Score =  215 bits (549), Expect = 7e-54,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 165/392 (42%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK++V +  I+E L  A  II  K        + L+A  G L I A+   IE TG  PA 
Sbjct: 1   MKLSVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEKGSLSIMATDANIEFTGRYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I V      D+VR+L  G  +     +E    + +  G   + L       F +
Sbjct: 61  VKQPGLIGVQGRAFVDLVRQLPAG--VLQLTLDESTGNLLLEQGRRTYKLPVSGAEWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E         +   L+++++R  F ++ ++    +  ++        ++     +GH+
Sbjct: 119 FSEFPDETPVTWSGDFLQDVLDRVVFCISDDDATDAITCLYMKPCGNG-RIDVCGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLS 236
            A+         A++P   +++ +K + ++ + L   +  +++++++ R++L     + S
Sbjct: 178 FALVSFTHDDLAARLPEEGVLIQKKYLQDMKKWLGVDE--IELNITDKRLYLRTLDGAES 235

Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +SV     ++P+Y   +          L VN     +A+ R+ I ++   +   L L  +
Sbjct: 236 LSVPRAGHDYPDYTVFMSRLEGDGVSLLTVNRKEAIEALGRIQIFNTDSDRCAYLDLGDN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           ++ ++    D G A ES+ V Y      I F  + L++++ + SS  V        L  +
Sbjct: 296 EVRLSAQGQDTGSANESLEVTYRGDISRIAFPTRNLMDVLGHFSSPSVD-----MILTGA 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                IRG + +             ++MPM+I
Sbjct: 351 EGPCGIRGSEDNE---------YTVIIMPMKI 373


>gi|111220716|ref|YP_711510.1| DNA polymerase III subunit beta [Frankia alni ACN14a]
 gi|111148248|emb|CAJ59918.1| DNA polymerase III, beta chain [Frankia alni ACN14a]
          Length = 408

 Score =  215 bits (548), Expect = 9e-54,   Method: Composition-based stats.
 Identities = 89/405 (21%), Positives = 155/405 (38%), Gaps = 30/405 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKN--TIPVSCHVLLQANDGL--------LEIKASGPE 50
           M+ +VER    +  G A R +  +   T      +LL+A            L + A   E
Sbjct: 8   MRFSVERDVFADATGWAARHLPSRPGLTPSALTGLLLEAAAPAAGPQPGAGLLVCAFDSE 67

Query: 51  IEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           + +   + A+V+  G + V   LL DIV  L              G  + +  G   F +
Sbjct: 68  VAVRAPVAAAVEEPGRVLVPGRLLADIVHSLPATTVEVAVD----GDRLVLRCGSVRFTV 123

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                +++P           E+ +      V +   A   +E    L  +   I+   L 
Sbjct: 124 PLMDLADYPELPRFPAPIG-EVNTLGFAAAVGQVAPAAGRDETVPVLTAVRLEISGHGLI 182

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSI-IVPRKAVGEILRILSSKDSSVKVSLS----- 224
           L   ATD +RLAV  +     +    ++  VP K + E+ R  +S  S + + L      
Sbjct: 183 L--AATDRYRLAVRAIPWQPTVDDPWALAHVPAKVLAEVARTPTSA-SRIVIGLDLADPA 239

Query: 225 ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ 284
            +R+ L        VRLIDG FPNY+ ++P           T    A  R   + + R  
Sbjct: 240 GARLGLAAAGRQTIVRLIDGTFPNYRKLLP-ETAAYTVTAQTAALAAAVRRVAVVATRTA 298

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
            ++ + + D++     +    +A E++ V Y+   + + FN  YLL+ +  +  DE    
Sbjct: 299 PLRFTFTRDQVVAEAGDGSGAQASETIPVEYSGPELSVLFNPSYLLDGLGAVEDDEATIG 358

Query: 345 EVVFRLDSSNS-SVFIRGKDK----DSKNNKDNKVNAFYVLMPMR 384
            V      + +    + GKD            ++    Y+LMP+R
Sbjct: 359 FVAADPAEATARPAVLTGKDSGGVRGPGGGPVDEGAFRYLLMPIR 403


>gi|152989755|ref|YP_001355477.1| DNA polymerase III subunit beta [Nitratiruptor sp. SB155-2]
 gi|151421616|dbj|BAF69120.1| DNA polymerase III, beta subunit [Nitratiruptor sp. SB155-2]
          Length = 354

 Score =  215 bits (547), Expect = 1e-53,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 182/385 (47%), Gaps = 35/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI + +S   ++L      +E+K+   ++ HV ++AN+  L +KA+  E  +  ++   
Sbjct: 1   MKIEIRKSLFEQVLTQIQPFLEKKDISQITSHVYIEANE-KLILKATDYETGLKTSLEDF 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    G  T +   L DI+R L++       KEN     ++IS G S F L  F    FP
Sbjct: 60  NCIKPGLATANGKKLLDIIRILKEDLITLETKENT----LHISQGHSRFKLPMFDAESFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + + +   ++        +++   A+ T   ++ LNG    I E+  K+  VATD  
Sbjct: 116 KFPDIDNLPKIDIKGGEFIASLKKIAPAIDTNNPKFELNGALIDIKED--KINFVATDTR 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  V +   + K  ++I+P+KA+ EI ++       + +   E+ + +  E+     
Sbjct: 174 RLAL--VTLEQSMEKAFNLIIPKKAINEIQKLFLD---DISMFYDETYLIIKNENYLFFT 228

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y+ +IP + + E+ +   ++ +A+ +++I+S+     +KL+   D++    
Sbjct: 229 KLINGKFPDYERIIPKTLNYEMTLPKESMIEAIKQITIISNE----LKLTFLKDRIIFRS 284

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + +  +A   + V    E    +  N KY+L+ + +I +D+                 F
Sbjct: 285 LSEENIEAQTEIEVSTPFEEKFVMAVNSKYILDFLAHIDTDQ-----------------F 327

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           + G +      +  + N   ++MP+
Sbjct: 328 VMGINDSDLPFELKENNFITIVMPI 352


>gi|313671972|ref|YP_004050083.1| DNA polymerase iii, beta subunit [Calditerrivibrio nitroreducens
           DSM 19672]
 gi|312938728|gb|ADR17920.1| DNA polymerase III, beta subunit [Calditerrivibrio nitroreducens
           DSM 19672]
          Length = 368

 Score =  213 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 89/384 (23%), Positives = 183/384 (47%), Gaps = 22/384 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++++  +L +A   I  KNT  +  ++ + A +G +  K +         +   
Sbjct: 1   MKFKIIKNEVFYILQNAVNFISIKNTNTILQNIYISAENGKVVFKTNSILSGFCAEVDLD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++ G+ TV    L+DIV++  D A I FF +   G+ + IS G +NF L +     FP+
Sbjct: 61  VEMEGTTTVICKKLFDIVKEFSDSAIIEFFFD---GSRLKISSGQANFSLATMSPELFPA 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +    YS ++ SS L + +++T F +AT   +    G+   +    L+L   ++D  R
Sbjct: 118 MSDITPEYSLKIDSSQLADALDKTLFCVATNATKIEFTGLHLKVYGNKLELH--SSDFQR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           ++ A + +  + +    I +P+K   +IL++L  + ++V++     +  L   ++ +  R
Sbjct: 176 ISSAVITLPEEQSDEFIINIPKKTASDILKVL-DRTATVEIYTDLKQFMLVAGNIKIYSR 234

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+    +   +       E+ V+  +L   + +V  +S+    A+ LSLSSD++ +   
Sbjct: 235 LIEKAVKSINTLFSSETPIEVVVDKNSLSDNIRKVLPISTEITHAIVLSLSSDQITVYTL 294

Query: 301 NPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
             + G+  + +  + +   P+D+  N K LLEI+ +I  +      V+ +L    + VFI
Sbjct: 295 ETEYGQGFDKLNPIKFTGDPIDVILNGKLLLEILSHIDCN-----NVILKLSGRRNPVFI 349

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPM 383
             +            N  Y+++P+
Sbjct: 350 YPE----------YGNYKYLIVPL 363


>gi|313681132|ref|YP_004058870.1| DNA polymerase iii, beta subunit [Sulfuricurvum kujiense DSM 16994]
 gi|313153992|gb|ADR32670.1| DNA polymerase III, beta subunit [Sulfuricurvum kujiense DSM 16994]
          Length = 355

 Score =  213 bits (544), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 91/385 (23%), Positives = 181/385 (47%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKITV++S +  +L H    +E+K+T  ++ H+LL  +   L  KA+  EI +       
Sbjct: 1   MKITVDKSVLENILLHLQPFLEKKDTSQITSHILLSTDGRTLYAKATDYEIGLIIQTNSV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V+  GS+T +   L DI+R L+D        ++     ++I    SNF L ++  SEFP
Sbjct: 61  NVEEPGSLTANGKKLLDIIRILKDEEIELTLDKDT----LHIRQKRSNFKLPTYKSSEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +   +  + S +L   +++   A  T   ++ LNG    I    +    V+TD  
Sbjct: 117 AFPTTDGKPNIAINSHLLIESLKKITPAADTNNPKFELNGALIDIKNNQINF--VSTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +D  +Q     SIIVP+KA+ EI ++ +    ++++    + + +  E      
Sbjct: 175 RLALVHID--SQNDHELSIIVPKKAIIEIQKLFAD---NIEIFYDNTHLVIKSEDSLFYT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  +IP    + + +  + +  A+ +++ +S+     +KL+  SD +    
Sbjct: 230 KLINGKFPDYSRIIPKEAQRTIVLPKSVIVTAIKQITTISND----LKLTFQSDSILFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A  ++ +    E P  +  N +Y+L+ +  +++      E     + SN    
Sbjct: 286 LSDDNIEAKTTVEIENGFESPFILAINSRYILDFLSQVNAT-----EFTLEANESNQPFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++              N   ++MP+
Sbjct: 341 LK------------DQNFKTIVMPI 353


>gi|154174460|ref|YP_001407306.1| DNA polymerase III subunit beta [Campylobacter curvus 525.92]
 gi|112803507|gb|EAU00851.1| DNA polymerase III, beta subunit [Campylobacter curvus 525.92]
          Length = 355

 Score =  213 bits (543), Expect = 3e-53,   Method: Composition-based stats.
 Identities = 77/387 (19%), Positives = 174/387 (44%), Gaps = 34/387 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+ + ++ +  ++ +    +E+++   ++ H+ + A +G+L I+A+  EI +   +   
Sbjct: 1   MKVLINKNVLESIVTNTNPYLEKRDLSAITSHIYIAAKNGVLNIRATDHEIGLAYKLSNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T +   L DI++ L+D   I     N     + I   +S + L  +   +FP
Sbjct: 61  KITDEGYATANGKKLLDIIKSLKDDEVILETVNN----YLYIKQKNSKYKLPMYKFEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F++ + +L   +++   ++ +   ++ LNG    I +  + +  V TD  
Sbjct: 117 EFPSSEGKSKFDVDAVMLGRSLKKILPSIDSNNPKFELNGALLDIRQNFINI--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL++          +  SII+P+KA+ EI ++   +   +++   E+ +     +     
Sbjct: 175 RLSI--FKFETPTEREFSIIIPKKAINEIQKLFFDR---IEIYYDENILIAQSANFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G++P+Y+ V+P    K L++N   +   +  +S++S      +K++ + D +    
Sbjct: 230 KLINGKYPDYERVVPKEIKKRLKLNRDKMIDGIRTISMLSDQ----MKITFTKDSITFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
              D  +A  ++      E  + I    +YLL+ + +I      DD+     + SN +  
Sbjct: 286 IIEDNSEAKTTIEYQTGLEDEIFIGIKNRYLLDFLTSIE-----DDDFELGFNDSNLAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  K+  +            V+MP+ I
Sbjct: 341 VSSKELTT------------VIMPINI 355


>gi|254779479|ref|YP_003057584.1| DNA polymerase III subunit beta [Helicobacter pylori B38]
 gi|254001390|emb|CAX29379.1| DNA polymerase III subunit beta [Helicobacter pylori B38]
          Length = 374

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|149194733|ref|ZP_01871828.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2]
 gi|149135156|gb|EDM23637.1| DNA polymerase III subunit beta [Caminibacter mediatlanticus TB-2]
          Length = 350

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 97/385 (25%), Positives = 177/385 (45%), Gaps = 35/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +++  I  L+  A    E+K+   ++ H+L+ AN+  L IKA+  EI I     A 
Sbjct: 1   MYIKIQKPVIESLINQAMPFTEKKDNTQITSHILIDANEN-LTIKATDKEIGIKLTTDAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G IT++   L+DI++ L++  +I    EN+   ++ I    S + L SF  +EFP 
Sbjct: 60  IINPGKITINGKKLFDIIKTLKN-KEIEIKSEND---KITIKQDTSIYNLTSFNANEFPE 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +   E+ ++   + +++   ++     +Y LNG  F I E   K   V+TD  R
Sbjct: 116 FPNPNDLEKLEVDNNEFFDAIKKIFPSIDNNNPKYELNGALFDIKE---KTNFVSTDTRR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV   +          IIVP++++ EI RI       +K+   +  + L  E+     +
Sbjct: 173 LAVYYSNAKGNA---KQIIVPKRSISEIKRIFKD---DMKIFYDDIYLILKDENTLFFTK 226

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FP Y+ +IP S    L++        + +VSI+S+     V++ +++DK+     
Sbjct: 227 LINGKFPTYEKIIPNSFKYTLKIPKDEFTSYLKQVSIISNE----VRIKITNDKIEFESI 282

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +  KA  S N   N    +   N +YL + ++ I+S+     E    L+  N    ++
Sbjct: 283 SDETTKAKTSFNFNSNIEEFEFAVNSRYLFDFLNIINSN-----EFELCLNDPNIPFMVK 337

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                             ++MP+ I
Sbjct: 338 ------------DGKFITIIMPLNI 350


>gi|78776203|ref|YP_392518.1| DNA polymerase III subunit beta [Sulfurimonas denitrificans DSM
           1251]
 gi|78496743|gb|ABB43283.1| DNA polymerase III, beta subunit [Sulfurimonas denitrificans DSM
           1251]
          Length = 355

 Score =  213 bits (542), Expect = 5e-53,   Method: Composition-based stats.
 Identities = 100/385 (25%), Positives = 184/385 (47%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MKIT+++S I  +L H+   +E+K+T  ++ HV + A++  L +KA+  EI  I      
Sbjct: 1   MKITIQKSIIENILIHSQPFLEKKDTSQITSHVFIDASNNKLTLKATDYEIGLIVSTDKL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G++T +   L DIVR L+DG      K +     + IS   S F L +F  +EFP
Sbjct: 61  NISQDGNVTANGKKLLDIVRILKDGEINLEVKSD----ILYISQSHSKFKLPTFSYNEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E      + S  L + +++   ++     ++ LNG    I + ++     +TD  
Sbjct: 117 VFPMSEGKSRILIDSHSLIDSLKKITPSIDINNPKFELNGALIDIKQNNINF--ASTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV  V+I  Q +   SIIVP+KA+ EI ++      ++++   E+ + ++ +  +   
Sbjct: 175 RLAV--VNIENQSSSELSIIVPKKAIVEIQKLFFD---NIELYYDENYLIIHSKEYTFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP Y  +IP      L +    + +A+ +++ +S+     VK++  +D +    
Sbjct: 230 KLINGKFPEYSRIIPKEIKNTLILQKAKMIEAIKQITTISTD----VKITFLNDTVIFES 285

Query: 300 DNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   +N +     P  I  N +YLL+ ++ I+S      E    L+ SN    
Sbjct: 286 LSDDNIEAKTEINSITGFTTPFTIAVNSRYLLDFLNTINSS-----EFNIGLNDSNLPFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +            N  N   V+MP+
Sbjct: 341 L------------NDGNFKTVVMPI 353


>gi|326777822|ref|ZP_08237087.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
 gi|326658155|gb|EGE43001.1| DNA polymerase III, beta subunit [Streptomyces cf. griseus
           XylebKG-1]
          Length = 375

 Score =  212 bits (541), Expect = 7e-53,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 147/391 (37%), Gaps = 33/391 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA------NDGLLEIKASGPEIEIT 54
           M+  +ERS + + +  A R++  ++ +PV   +LL          G L I     E    
Sbjct: 1   MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
             + A V   G + V    L DI + L +G  +    E   G+   +S   + F L   P
Sbjct: 61  VDVDAEVVRPGKVLVMGRRLLDICKVLPEGP-VECAVE---GSRFTVSGDGARFGLSVLP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++PS           + + +    V     A   ++    L GI   ++ + + L   
Sbjct: 117 LDDYPSLPPLPQ-LRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTL--A 173

Query: 175 ATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           ATD +R AV  +   A    +   ++V  + + EI R L  +   V V+L          
Sbjct: 174 ATDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSL-GRSGLVSVALDAGSAGFEHA 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-- 291
               +VRL++G  P ++ +   ++     V+   L +AV RVS+++      V+++ S  
Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVADGDS-PVQMAFSRA 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              + +     +   A + +         + + FN  YL + + +       +  +   L
Sbjct: 292 DSSVTLRA-GYEDDVASQRLPASLEGAEELTVAFNPGYLADALAS-----CTEPSLRLLL 345

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
             +     I  +     +         ++LM
Sbjct: 346 LGAGQRAMITDEAGTDVH--------RHLLM 368


>gi|224372072|ref|YP_002606444.1| DNA polymerase III subunit beta [Nautilia profundicola AmH]
 gi|223589002|gb|ACM92738.1| DNA polymerase III, beta subunit [Nautilia profundicola AmH]
          Length = 350

 Score =  212 bits (540), Expect = 8e-53,   Method: Composition-based stats.
 Identities = 92/385 (23%), Positives = 178/385 (46%), Gaps = 35/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I +E+  I  +L       E+K+   ++ H+L++AN+  L +KA+  EI I     A 
Sbjct: 1   MHIRIEKPVIESILNQIIPFTEKKDNTQITSHILIKANE-KLILKATDKEIGIKVITNAE 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G++T++     DI++ LQ+       +EN    ++ I+   S + L SF  SEFP 
Sbjct: 60  IIEPGTVTINGKRFLDIIKTLQNKEIEIKTEEN----QITITQDSSIYKLTSFNASEFPE 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               + +   ++ +  L   +++ +  +     +Y LNG  F + E   K   V+TD  R
Sbjct: 116 FPNTDEMNKIDIETEELNKAIKKIYPVIDNNNPKYELNGALFDLGE---KTNFVSTDTRR 172

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAV      A+ +K   IIVP++++ EI R++      +++   +  + L    +    +
Sbjct: 173 LAVYYSKAKARDSK---IIVPKRSIAEIKRVIRD---DMQIFYDDVYLILKNNEILFFTK 226

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           LI+G+FP Y+ +IP S   EL +        + +VSI+S+     VK+++ +DK+     
Sbjct: 227 LINGKFPAYEKIIPQSLKYELNIPKGEFLSHLKQVSIISNE----VKITIKNDKIIFESI 282

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
           + +  +A  S ++           N +Y+++ ++ I      +D  V  L+  N    ++
Sbjct: 283 SDETMQAKTSFDLNTPLEDFTFAVNSRYIMDFLNVIE-----NDTFVLGLNEPNIPFVLK 337

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMRI 385
                         N   ++MP+ I
Sbjct: 338 ------------DENFITIVMPLNI 350


>gi|254456728|ref|ZP_05070156.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1]
 gi|207085520|gb|EDZ62804.1| DNA polymerase III, beta subunit [Campylobacterales bacterium GD 1]
          Length = 355

 Score =  212 bits (540), Expect = 9e-53,   Method: Composition-based stats.
 Identities = 99/385 (25%), Positives = 180/385 (46%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI V +S I  +L +A   +E+K+T  ++ HV +  ND  L +KA+  EI    +    
Sbjct: 1   MKIIVSKSIIENILVYAQPFLEKKDTSQITSHVYINVNDSKLTVKATDYEIGFEVSTDKV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S+   GSIT +   L DI+R L+DG      K +     ++IS   SNF L +F  +EFP
Sbjct: 61  SIISTGSITANGKKLLDIIRILKDGEINLEIKND----MLHISQSHSNFKLPTFSYNEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E      + S  L   +++   A+ T   ++ LNG    I ++ +     +TD  
Sbjct: 117 EFPSYEGKSRISIESHSLIESLKKITPAIDTNNPKFELNGALIDIKQDSINF--ASTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  V+I  Q     SII+P+KA+ EI ++      ++++   ++ + ++ +  +   
Sbjct: 175 RLAI--VNIPNQSVSELSIILPKKAIIEIQKLFFD---NIELYYDDTNLIIHSDQYTFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP Y  ++P      L +    +  ++ +++ +SS     VK++  ++ +    
Sbjct: 230 KLINGKFPEYSRIVPKEVSNTLILPKAIMIDSIKQITTISSD----VKITFLNNYITFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   ++     E P  I  N KYLL+ +++I+S      E    L+  N    
Sbjct: 286 LSDDNIEAKTEISYNTGFEEPFVIAINSKYLLDFLNSINSS-----EFSIGLNEGNLPFL 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +               N   V+MP+
Sbjct: 341 LV------------DDNFKTVVMPI 353


>gi|297622254|ref|YP_003703688.1| DNA polymerase III subunit beta [Truepera radiovictrix DSM 17093]
 gi|297163434|gb|ADI13145.1| DNA polymerase III, beta subunit [Truepera radiovictrix DSM 17093]
          Length = 363

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 87/389 (22%), Positives = 162/389 (41%), Gaps = 33/389 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V R  + E+L H  RI+  +++ P    + L+ +DG L +  S  ++++   +  S
Sbjct: 1   MNVEVPRKALGEVLAHLERIVPSRSSNPSLSLLRLELSDGHLTLSGSNLDLDLQATLAVS 60

Query: 61  V--DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              +  G   + AH+   + R L  G  +    E     E+ +  G     LQ    ++ 
Sbjct: 61  SSGERGGPWALPAHVFGQVARALP-GELVELTFE---SAELEVRSGSYATKLQLMT-TDL 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P             ++  L   +    +A A  E +    G+   ++  D +  AVATDG
Sbjct: 116 PDLV-FPNDLPGRFSAERLGAALSHVRYAAAVAEYQAIFRGVKLELH--DGRTRAVATDG 172

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            RLA   +     +A+   I++P ++  E++++L   D   K+ LSE ++ L      ++
Sbjct: 173 FRLAYYHLGASTGLAQ--DIVIPARSADELVKLL--GDGETKLGLSEGQLSLETGPYRLN 228

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCM 297
           V+L++G FP+Y+ VIP      + +    L + V RV++M+       V L +    L +
Sbjct: 229 VKLMEGTFPDYERVIPSHFPVSITLAARTLLEGVQRVAVMADRTANNRVDLFVRDGTLQI 288

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           T +    G+A E++ V       +I    N  YLL  +  +  D      V F      S
Sbjct: 289 TAEGA-YGRAQEALAVAQEGSESEIALAYNADYLLSALRPVGGD------VRFSFSGPTS 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +      S            +++P+R
Sbjct: 342 PSVLVSLADPS---------YLAMVVPLR 361


>gi|317012318|gb|ADU82926.1| DNA polymerase III subunit beta [Helicobacter pylori Lithuania75]
          Length = 374

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ V+     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++   K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLSAKIST--LMMPITL 374


>gi|260592336|ref|ZP_05857794.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319]
 gi|260535723|gb|EEX18340.1| DNA polymerase III, beta subunit [Prevotella veroralis F0319]
          Length = 322

 Score =  212 bits (539), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 79/326 (24%), Positives = 152/326 (46%), Gaps = 18/326 (5%)

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S +  G   V++  + D V++L +         +E+   +   +G  NF +      E+P
Sbjct: 9   SCEGEGDFAVNSQTILDAVKELPEQPLALDVNFDEMKIYITYQNGSYNFPILG--ADEYP 66

Query: 120 STKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
             +   +   S  + ++ L + + R+ FA A +E+R  +NGI+F +  +   L  VA+DG
Sbjct: 67  RVQPISDNASSITIDAAKLSDSINRSIFATAQDELRPVMNGIYFDLTSDS--LAIVASDG 124

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           H+L V   +   +     + I+P+K    +  +L+     V +   E    ++    ++S
Sbjct: 125 HKL-VRNKNFSIKSETPSAFILPKKPATLLKTVLAKDGGDVVIRFDERFADISFADGNLS 183

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            RLI+G++PNY +VIP  N   + ++  +L  A+ RV   +S   Q ++  +S+  L + 
Sbjct: 184 CRLIEGKYPNYNSVIPQDNPNRITIDRKSLIGALRRVLPFASDSSQLIRFHVSTGLLELN 243

Query: 299 VDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++ D    A ES+   Y+   M I F    +LEI++N+ S     D+VV +L   + + 
Sbjct: 244 AEDIDFSTSAKESVTCEYDGNAMSIGFKGSSMLEILNNLES-----DDVVIQLADPSRAG 298

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            I          +    +   ++MPM
Sbjct: 299 VIVP------GVQPENEDVLMLIMPM 318


>gi|109947376|ref|YP_664604.1| DNA polymerase III subunit beta [Helicobacter acinonychis str.
           Sheeba]
 gi|109714597|emb|CAJ99605.1| DNA polymerase III, beta chain [Helicobacter acinonychis str.
           Sheeba]
          Length = 374

 Score =  211 bits (538), Expect = 1e-52,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 170/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D       KE+     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNITLETKEDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L G+    ++    L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ +      +  S I+P++A+ EIL++      S           +  E+ + 
Sbjct: 177 RLSYTQLENISVNSTEEYISCILPKRALLEILKLFY---ESFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +N    ++++     +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYASSFTLNKEGFKESIK----LSSSLSPTIKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +  +   E    +  N K+ LE ++ + +      + V   ++ 
Sbjct: 290 ESLDSEHSETAKTSIEIEKDLEIEKAFHLGVNAKFFLEALNALGTT-----QFVLHCNAP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SAPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|218887172|ref|YP_002436493.1| DNA polymerase III subunit beta [Desulfovibrio vulgaris str.
           'Miyazaki F']
 gi|218758126|gb|ACL09025.1| DNA polymerase III, beta subunit [Desulfovibrio vulgaris str.
           'Miyazaki F']
          Length = 388

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 85/396 (21%), Positives = 167/396 (42%), Gaps = 30/396 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + +++ D++E L  A  II  K        + L+A +G L + A+   IE  GA  A 
Sbjct: 1   MFLRIQKEDVIEGLQKAASIIPAKTGAAYLRSIWLKAENGSLSVLATDSNIEFRGAYAAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G   V      D++RKL  G QI+   + E G  + I  G   + L       F +
Sbjct: 61  IEQPGLAGVQGRAFVDLLRKLPGG-QITLKLDGESGN-LLIEQGRRKYKLPVNDSVWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     S   +   L+ L++R  F ++ E+    +  +      ++  + A   +GH+
Sbjct: 119 FSEFPADGSVMWSGDYLQELIDRIAFCISDEDAVEAIACLSLKPGAQNA-IEACGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMP--SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+        +A +P   I++ +K +GE+ + L + +  V++++SE R+H        +
Sbjct: 178 FAMLRFTHDELMAMLPPEGILIQKKYLGELKKWLGTDE--VELNISEKRLHFRTGDGKET 235

Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL----S 289
            S+ L   ++P+Y N +      +   L +   +   A+DR+ I ++   +        +
Sbjct: 236 FSLPLSYYQYPDYMNFLAKLSADSVSRLELPRKDAMDALDRLLIFNTDSNRCTYFDLDGN 295

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
                + ++    D+G A E++   Y+     I F  + L+EI+ +  S     + +   
Sbjct: 296 GGGGDVVLSAQGQDVGSATETLEATYSGDIKKIAFPTRNLIEIMGHYRS-----ERLGLT 350

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L  S     + G D               ++MPM+I
Sbjct: 351 LTGSEGPCGLTGSDDSE---------YTVIIMPMKI 377


>gi|182437190|ref|YP_001824909.1| DNA polymerase III subunit beta [Streptomyces griseus subsp.
           griseus NBRC 13350]
 gi|178465706|dbj|BAG20226.1| putative DNA polymerase III beta subunit [Streptomyces griseus
           subsp. griseus NBRC 13350]
          Length = 375

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 141/371 (38%), Gaps = 25/371 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA------NDGLLEIKASGPEIEIT 54
           M+  +ERS + + +  A R++  ++ +PV   +LL          G L I     E    
Sbjct: 1   MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLDTEGGGRGEGGSLRISGLDYEASAR 60

Query: 55  GAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
             + A V   G + V    L DI + L +G  +    E   G+   +S   + F L   P
Sbjct: 61  VDVDAEVVRPGKVLVMGRRLLDICKVLPEGP-VECAVE---GSRFTVSGDGARFGLSVLP 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++PS           + + +    V     A   ++    L GI   ++ + + L   
Sbjct: 117 LDDYPSLPPLPQ-LRGAVDAELFAAAVADVAVAAGRDDTLPALTGIRLGLDGDTMTL--A 173

Query: 175 ATDGHRLAVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           ATD +R AV  +   A    +   ++V  + + EI R L  +   V V+L          
Sbjct: 174 ATDRYRYAVRTLPWKATTPGETADVLVSARRLTEIARSL-GRSGLVSVALDAGSAGFEHA 232

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS-- 291
               +VRL++G  P ++ +   ++     V+   L +AV RVS+++      V+++ S  
Sbjct: 233 GTRTTVRLLEGRLPRHEKLFAMADPAVAVVDRVRLTEAVKRVSVVADGDS-PVQMAFSRA 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              + +     +   A + +         + + FN  YL + + +       +  +   L
Sbjct: 292 DASVTLRA-GYEDDVASQRLPASLEGAEELTVAFNPGYLADALTSF-----TEPSLRLLL 345

Query: 351 DSSNSSVFIRG 361
             +     I  
Sbjct: 346 LGAGQRAMITD 356


>gi|317177661|dbj|BAJ55450.1| DNA polymerase III subunit beta [Helicobacter pylori F16]
          Length = 374

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++   K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLSAKIST--LMMPITL 374


>gi|308184281|ref|YP_003928414.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180]
 gi|308060201|gb|ADO02097.1| DNA polymerase III subunit beta [Helicobacter pylori SJM180]
          Length = 374

 Score =  211 bits (537), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L G+    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGVLMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ V+     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++   K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLSAKIST--LMMPITL 374


>gi|108562901|ref|YP_627217.1| DNA polymerase III subunit beta [Helicobacter pylori HPAG1]
 gi|107836674|gb|ABF84543.1| DNA polymerase III beta-subunit [Helicobacter pylori HPAG1]
          Length = 374

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++   K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLSAKIST--LMMPITL 374


>gi|217034368|ref|ZP_03439783.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10]
 gi|216943163|gb|EEC22633.1| hypothetical protein HP9810_889g13 [Helicobacter pylori 98-10]
 gi|315586816|gb|ADU41197.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori
           35A]
          Length = 374

 Score =  210 bits (536), Expect = 2e-52,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+   G L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKGKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++   K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLSAKIST--LMMPITL 374


>gi|317009521|gb|ADU80101.1| DNA polymerase III subunit beta [Helicobacter pylori India7]
          Length = 374

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++++   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNTPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|210134703|ref|YP_002301142.1| DNA polymerase III subunit beta [Helicobacter pylori P12]
 gi|210132671|gb|ACJ07662.1| DNA polymerase III beta subunit [Helicobacter pylori P12]
          Length = 374

 Score =  210 bits (535), Expect = 3e-52,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V R +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLRCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|217032915|ref|ZP_03438391.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128]
 gi|298736180|ref|YP_003728706.1| DNA polymerase III subunit beta [Helicobacter pylori B8]
 gi|216945364|gb|EEC24034.1| hypothetical protein HPB128_10g7 [Helicobacter pylori B128]
 gi|298355370|emb|CBI66242.1| DNA polymerase III, beta chain [Helicobacter pylori B8]
          Length = 374

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|317180278|dbj|BAJ58064.1| DNA polymerase III subunit beta [Helicobacter pylori F32]
          Length = 374

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 173/392 (44%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    +++D  L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFDQKDQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +N+ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQNHLNAKIST--LMMPITL 374


>gi|308061829|gb|ADO03717.1| DNA polymerase III subunit beta [Helicobacter pylori Cuz20]
          Length = 374

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|15611519|ref|NP_223170.1| DNA polymerase III subunit beta [Helicobacter pylori J99]
 gi|11132657|sp|Q9ZLX4|DPO3B_HELPJ RecName: Full=DNA polymerase III subunit beta
 gi|4154988|gb|AAD06030.1| DNA POLYMERASE III, BETA CHAIN [Helicobacter pylori J99]
          Length = 374

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 81/397 (20%), Positives = 172/397 (43%), Gaps = 35/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L G+    N++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGVLMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS-----KDSSVKVSLSESRIHLNI 232
           RL+  +++ ++     +  S I+P++A+ EIL++         D  + V  +E+      
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHAFF-- 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                  +LIDG +P+YQ ++P        +     ++ +   S +SS     +KL+L  
Sbjct: 235 ------TKLIDGNYPDYQKILPKEYTSSFTLGKEEFKEGIKLCSSLSST----IKLTLEK 284

Query: 293 DKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +       + +    A  S+ +      E    +  N K+ LE ++ + +      + V 
Sbjct: 285 NNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVL 339

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 340 KCNEPSSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|261839664|gb|ACX99429.1| DNA polymerase III subunit beta [Helicobacter pylori 52]
          Length = 374

 Score =  210 bits (534), Expect = 4e-52,   Method: Composition-based stats.
 Identities = 84/392 (21%), Positives = 173/392 (44%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++D  L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKDQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ V+     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|208434423|ref|YP_002266089.1| DNA polymerase III beta-subunit [Helicobacter pylori G27]
 gi|208432352|gb|ACI27223.1| DNA polymerase III beta-subunit [Helicobacter pylori G27]
          Length = 374

 Score =  209 bits (533), Expect = 5e-52,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++++   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNELENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEVNAPFLIDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|308063701|gb|ADO05588.1| DNA polymerase III subunit beta [Helicobacter pylori Sat464]
          Length = 374

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 173/392 (44%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D + I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSSIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|317181822|dbj|BAJ59606.1| DNA polymerase III subunit beta [Helicobacter pylori F57]
 gi|332673707|gb|AEE70524.1| DNA-directed DNA polymerase III beta subunit [Helicobacter pylori
           83]
          Length = 374

 Score =  209 bits (533), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ V+     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYLSSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|297379695|gb|ADI34582.1| DNA polymerase III, beta subunit [Helicobacter pylori v225d]
          Length = 374

 Score =  209 bits (532), Expect = 6e-52,   Method: Composition-based stats.
 Identities = 81/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D +     K++     + I    S+F L  F   EFP
Sbjct: 61  SSDEEGVGTINGKKFLDIISCLKDSSITLETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|261838254|gb|ACX98020.1| DNA polymerase III beta subunit [Helicobacter pylori 51]
 gi|317179130|dbj|BAJ56918.1| DNA polymerase III subunit beta [Helicobacter pylori F30]
          Length = 374

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 83/392 (21%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ V+     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|218296135|ref|ZP_03496904.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
 gi|218243512|gb|EED10041.1| DNA polymerase III, beta subunit [Thermus aquaticus Y51MC23]
          Length = 370

 Score =  209 bits (532), Expect = 7e-52,   Method: Composition-based stats.
 Identities = 80/393 (20%), Positives = 161/393 (40%), Gaps = 37/393 (9%)

Query: 5   VERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           V++  +   L  A  I    +   P+  ++ L+  +  L I+ +  E+++   +PA  + 
Sbjct: 3   VKQKLLNRALALARGIAPSGRPLNPLWTYLYLEGREKELVIRTANEEMDLEVRLPAMGEE 62

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDS-------NFYLQSFPES 116
            G + V A      V             E +    + I  G            + +    
Sbjct: 63  GGPVLVPASPFIRAVENAPGDED-----EEDKEVIILIQEGQVEVRAWPWRATINAAGPE 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP+  E +      + +  L   + +  +A++ E  R    G+    ++   +  AVA+
Sbjct: 118 GFPAWPESDTALRTRMDAQDLLRALSQVRYAVSRESWRAIFRGVQLEFSDRGFR--AVAS 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI---- 232
           DG+RLA+   D+          +VP ++V E++R+L   +  V +++  S + +      
Sbjct: 176 DGYRLAL--FDLERPQPFTKKAVVPARSVDELMRVLRGAEGEVDLAVGTSTMTMAAWQEK 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             + ++VRL+ GEFP+Y+ VIP      + +     R+A+ RVSI+++     V LSL  
Sbjct: 234 GVVRIAVRLMPGEFPDYERVIPKEFPLTVTLEAEPFREALKRVSILANKENHRVDLSLEG 293

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            +  +  +  D GK  E + V     PM + ++ ++ L+ +  +        EVV R   
Sbjct: 294 KRALLFAEG-DYGKGQEEIPVSLEGAPMSLAYDARHFLDAVSRVEG------EVVMRFSG 346

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +   I   D               V++P+++
Sbjct: 347 QFTPTLIEPAD---------GSGYLAVVVPLKV 370


>gi|116514953|ref|YP_802582.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
 gi|116256807|gb|ABJ90489.1| DNA polymerase III, b subunit [Buchnera aphidicola str. Cc (Cinara
           cedri)]
          Length = 368

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 91/390 (23%), Positives = 187/390 (47%), Gaps = 27/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  ++++D         RII +    P+  +++++ N+  L++ +S  E+E+   I   
Sbjct: 1   MEFKIKKNDFFNSFKKMNRIITKNPIFPILENIIIKINEKKLKLTSSNLEVELNAYIDKK 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   G + +S   + +I R +   A + F   N+   ++ I   +S F L +   + 
Sbjct: 61  FFILYKSGCVAISGKKILNICRNISKDAILHFKIINK---KMRICILNSLFELNTMICTN 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP   +      F ++  +LK ++    F++A  +IR  LNGI     + +  L  V TD
Sbjct: 118 FPIFNDFIKKKEFFISEKILKEIISLIFFSIANNDIRNVLNGILIEYKKNN--LYGVTTD 175

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G+RL+V ++ I   I K  SII+ +K++ E+ R+++  +  VKV ++ + +   I  + +
Sbjct: 176 GYRLSVYKIAINLNI-KNFSIIINKKSILELFRLINYTNKKVKVIINNNYVAFKINEILL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +++DG FPNY +VI       + +    L++++ + SI+ +   + V L+   +KL +
Sbjct: 235 KTKILDGNFPNYNDVILKKKKYSILIPTKPLKKSLSKTSILCNTIFKGVCLNFLKNKLII 294

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           T  N +  K+ +S  +      + I F  N  YLL+I++ +       + +        S
Sbjct: 295 TSKNQEDEKSYDSFIID--NKKIKISFHINVFYLLDILNVLD-----VEVITISFRIPIS 347

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S+ I+          D K    Y++MP+++
Sbjct: 348 SIQIQS---------DKKKEILYIIMPLKL 368


>gi|319955762|ref|YP_004167025.1| DNA polymerase iii, beta subunit [Nitratifractor salsuginis DSM
           16511]
 gi|319418166|gb|ADV45276.1| DNA polymerase III, beta subunit [Nitratifractor salsuginis DSM
           16511]
          Length = 355

 Score =  209 bits (532), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 88/385 (22%), Positives = 164/385 (42%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI  ++  I  +L +    +E+K+   ++ HV  +       ++ +  EI +       
Sbjct: 1   MKIRAQKQVIESILINLQPFLEKKDASQITSHVYFETGPDRCIVRGTDNEIGLQIVTREF 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            VD  GS T +   L DI+R L+D   I    +N     + I    S F L  F    FP
Sbjct: 61  EVDHPGSFTANGKKLLDIIRILRDDEIILELLDNA----LMIKQQHSKFKLPIFDAEAFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E +      L S  L   +++   A+ T   +Y LNG   +I  +  K   V TD  
Sbjct: 117 SFPEIDGKPKISLDSMNLIRNLKKITPAIDTNNPKYELNGALINIKND--KTDLVGTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAVA   I     +  ++I+P+KA+ EI ++       +++   E+ + +  +      
Sbjct: 175 RLAVA--TIPNNSEEELALILPKKAILEIQKLFLD---QIEIHYDETTLIITNDDYFFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FP+Y+ +IP S   ++ +    + +A+  V+ +++     +K++  SD +    
Sbjct: 230 RLINGKFPDYERIIPRSLKYQIELPKKEMLEAIRLVTTIAND----IKITFLSDAILFNA 285

Query: 300 DNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        +I  N +YLL+ +  +       D     ++ S     
Sbjct: 286 LSDDNVEAKTEIELNTGIPDRFEISLNSRYLLDFLAQVD-----HDRFTIGMNDSTLPFM 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +R              N   ++MP+
Sbjct: 341 VR------------DENFITIIMPI 353


>gi|317010749|gb|ADU84496.1| DNA polymerase III subunit beta [Helicobacter pylori SouthAfrica7]
          Length = 374

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 80/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIQEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D       KE+     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNITLETKEDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L G+    ++    L  V TD  
Sbjct: 117 EFPVIDPKVSLEVNAPFLVDAFKKIAPVVEQTSHKRELAGVLMQFDKTHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  ++  ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLKNISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + + S
Sbjct: 290 ESLDSEHSETAKTSIEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLQCNES 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+   ++ +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLEEKQSHLNAKIST--LMMPITL 374


>gi|317013918|gb|ADU81354.1| DNA polymerase III subunit beta [Helicobacter pylori Gambia94/24]
          Length = 374

 Score =  208 bits (531), Expect = 8e-52,   Method: Composition-based stats.
 Identities = 82/397 (20%), Positives = 173/397 (43%), Gaps = 35/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS-----KDSSVKVSLSESRIHLNI 232
           RL+  +++ ++     +  S I+P++A+ EIL++         D  + V  +E+      
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHAFF-- 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                  +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  
Sbjct: 235 ------TKLIDGNYPDYQKILPKEYASSFTLGKEEFKESIKLCSSLSST----IKLTLEK 284

Query: 293 DKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +       + +    A  S+ +      E    +  N K+ LE ++ + +      + V 
Sbjct: 285 NNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVL 339

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 340 KCNEPSSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|23007031|ref|ZP_00049078.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 233

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 90/247 (36%), Positives = 135/247 (54%), Gaps = 18/247 (7%)

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLK---LCAVATDGHRLAVAEVDIVAQIAKMPS 197
           +    FA++TEE RYYLNG++ H  +   +   L  VATDGHRLA A +        MP 
Sbjct: 1   MREIGFAISTEETRYYLNGVYLHAPDGAERAEGLVGVATDGHRLARARLPRPEGAEGMPG 60

Query: 198 IIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           II+PRK V EI ++         +V+LS S+I +  +  +++ +LIDG FP+Y+ VIP  
Sbjct: 61  IILPRKLVTEIGKLADGDGGPAFEVALSPSKIRIGRDDTTLTSKLIDGTFPDYERVIPRD 120

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
           N   L ++   L  A+DRV+ ++S R +AVKL+L +D++ +T +NPD G+A E  +  ++
Sbjct: 121 NPHTLALDGKALAPALDRVTTIASERGRAVKLALDADRIVLTQNNPDAGEATEEADAKFD 180

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             PM I FN KYL EI+  + S+ V       RL  + +    R +              
Sbjct: 181 GAPMQIGFNGKYLAEILALLDSEHVEA-----RLGDAGAPTLWRRRGDALLTV------- 228

Query: 377 FYVLMPM 383
             VLMPM
Sbjct: 229 --VLMPM 233


>gi|308182656|ref|YP_003926783.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4]
 gi|308064841|gb|ADO06733.1| DNA polymerase III subunit beta [Helicobacter pylori PeCan4]
          Length = 374

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 172/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   +   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIVLETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N+E   L  V TD  
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQEHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E+ + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVVENETHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V + +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|57504598|ref|ZP_00370710.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228]
 gi|305432570|ref|ZP_07401731.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli
           JV20]
 gi|57019493|gb|EAL56187.1| DNA polymerase III, beta subunit [Campylobacter coli RM2228]
 gi|304444281|gb|EFM36933.1| DNA-directed DNA polymerase III beta subunit [Campylobacter coli
           JV20]
          Length = 355

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 176/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+++ ++ +   +      +E+K++  ++ H+L +A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLLFEADEDKLIIRASDFEIGINYKIRKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESGGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  + E    F++ SS L   +++   ++ T   +Y LNG F  I  +  ++  V TD  
Sbjct: 117 NFPKTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--RINFVGTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV    +     +   I +P+KA+ E+ ++       +++   E+ +    ++     
Sbjct: 175 RLAVY--TLEKTNNQEFHISIPKKAIMEMQKLFY---EKIEIYYDENMLIAKNDNFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL+ +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELKFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  N +  
Sbjct: 286 ISLDNMEAKTELEIETGVSEEFNLNIKIKYLLDFLTSIE-----EEQFTLSVNEPNLAFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +  +                V+MPM
Sbjct: 341 VNSQGLS------------MVIMPM 353


>gi|15645127|ref|NP_207297.1| DNA polymerase III subunit beta [Helicobacter pylori 26695]
 gi|3913505|sp|O25242|DPO3B_HELPY RecName: Full=DNA polymerase III subunit beta
 gi|2313610|gb|AAD07565.1| DNA polymerase III beta-subunit (dnaN) [Helicobacter pylori 26695]
          Length = 374

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 82/392 (20%), Positives = 171/392 (43%), Gaps = 25/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++ L     I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDSLA----IKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    +++   L  V TD  
Sbjct: 117 EFPVIDPKVSIEVNAPFLVDAFKKIAPVIEQTSHKRELAGILMQFDQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           RL+  +++ ++     +  S I+P++A+ EIL++      +           +  E  + 
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY---ENFSFKSDGMLAVIENEMHTF 233

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  +    
Sbjct: 234 FTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNNALF 289

Query: 298 TVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
              + +    A  S+ +      E    +  N K+ LE ++ + +      + V R +  
Sbjct: 290 ESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLRCNEP 344

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +S   I+    + +++ + K++   ++MP+ +
Sbjct: 345 SSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|7716426|gb|AAF68381.1|AF235031_1 putative DNA-polymerase III, beta chain [Streptomyces coelicolor
           A3(2)]
          Length = 366

 Score =  208 bits (530), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 77/379 (20%), Positives = 145/379 (38%), Gaps = 29/379 (7%)

Query: 1   MKITVERSDILELLGHACRIIE-------RKNTIPVSCHVLLQANDGLLEIKASGPEIEI 53
           MK+T++ +     +     +         R++        L       + I A   EI  
Sbjct: 1   MKLTIDHTAFAAAVSTPSEVCPPGSGPHSRRSP----AGRL----QQRVRISAFDYEISA 52

Query: 54  TGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
                A+V   G   VS  LL DIV  ++    +        G  + +  G + F L + 
Sbjct: 53  DTTAAATVTETGRALVSGRLLSDIVCTVRGDVHLEL-----RGPRLVLKAGSARFILPTL 107

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
           P  E+P+  E     +  L        V +   A++ EE    L GI  H + E   L  
Sbjct: 108 PLDEYPALPE-PGTITGTLDGPAFAEAVAQVACAVSREESLPTLTGIGLHHDSEAATLTL 166

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH-LNI 232
            ATD    AV  +          S ++P +A+             + +   ++ +  L  
Sbjct: 167 YATDAT-FAVRTLSWKDANLPDTSAVIPGRALRRAKATADDTTVDLALPTGDAGLFTLRS 225

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           +  + ++R ++GE P Y  + P        V    L+ A  RV+++S+ +   +KL+ ++
Sbjct: 226 DLTTTAIRALEGELPKYDALFPTEFAHTATVEIAPLKAAAQRVALVSAKKDAPIKLTFTA 285

Query: 293 DK-LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           D  L +     D  +A++S++       + I FN  +LL+ ++ +     + + V F   
Sbjct: 286 DSTLVLEGGTGDDAQAVDSVDTSLTGGELTIAFNPAFLLDGLNAL-----MAESVQFDFI 340

Query: 352 SSNSSVFIRGKDKDSKNNK 370
           S      +R  D D + + 
Sbjct: 341 SPTKPAVLRAHDGDDQASA 359


>gi|303326104|ref|ZP_07356547.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3]
 gi|302864020|gb|EFL86951.1| DNA polymerase III, beta subunit [Desulfovibrio sp. 3_1_syn3]
          Length = 384

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 76/392 (19%), Positives = 170/392 (43%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV +  I+E L  A  II  K        + L+A +G L + ++   IE TG  PA 
Sbjct: 1   MKLTVNKEQIIEGLQKAAAIIPAKAGAAYLRSIWLKAEEGSLAVMSTDANIEFTGRYPAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G I V      D+VR+L  G  +     +E    + +  G   + L       F +
Sbjct: 61  VSQPGLIGVQGRAFVDLVRQLPTG--VLNLTLDEASGNLLLEQGRRVYKLPVSGSEWFQN 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     +   +   L++++++  F ++ ++    +  +      E+  +     +GH+
Sbjct: 119 FSEFPVENAVTWSGDFLQDVLDKVAFCISDDDAMDAIACLCMKP-GENGHIDVCGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI--ESLS 236
            A+         A++P+  +++ +K + +I + L + +  +++++++ R++L     + +
Sbjct: 178 FALVSFTHDDLAARLPAEGMLIQKKYLQDIKKWLGADE--IELNITDKRLYLRSLDGAET 235

Query: 237 MSVRLIDGEFPNYQNV---IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +S+     E+P+Y      +       + ++      A+ R+ I ++   +   + LS++
Sbjct: 236 LSLPRAAYEYPDYNIFMGKLADEGVNSMTLDRKEGMDALGRILIFNTESDRCTYMDLSAN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +  ++    D+G A ES+ V Y      I F  + LL+++ +  S ++        L  +
Sbjct: 296 EARLSAQGQDVGSASESLEVAYKGDIARIAFPTRNLLDVLGHFVSAKID-----MLLTGT 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                IRG +           +   ++MPM++
Sbjct: 351 EGPCGIRGPEDP---------DYTVIIMPMKV 373


>gi|268678646|ref|YP_003303077.1| DNA polymerase III subunit beta [Sulfurospirillum deleyianum DSM
           6946]
 gi|268616677|gb|ACZ11042.1| DNA polymerase III, beta subunit [Sulfurospirillum deleyianum DSM
           6946]
          Length = 355

 Score =  208 bits (529), Expect = 1e-51,   Method: Composition-based stats.
 Identities = 83/387 (21%), Positives = 171/387 (44%), Gaps = 34/387 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+++++S +  +L +    +E+K+   ++ HV L   +    +KA+  EI +T      
Sbjct: 1   MKVSIKKSILETMLLNVQPYLEKKDLSQITSHVFLAIENEHFVLKATDYEIGLTYHTSEI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T +   L DIV+ L+D   I     +     + I    S F L     ++FP
Sbjct: 61  KIASFGDGTANGKKLLDIVKSLKDDEIILETIND----YLYIKQNSSKFKLPMLNPNDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F + S+ L   +++   A+ T   ++ LNG    I +  + L  VATD  
Sbjct: 117 LFPTIENKPKFNINSTTLVRSIKKIAPAIDTNNPKFELNGSLIDIKDNTINL--VATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  V +  +  +  S I+P+KA+ EI ++       +++   E+ +       +   
Sbjct: 175 RLAI--VTLQQETTENFSFIIPKKAISEIQKLFFD---DIEIFYDENTLIAQSNHFTFYT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y  +IP + +  + +    + +++ ++SI+S      +K++  ++K+    
Sbjct: 230 KLINGKFPDYARIIPKNKNYTILLTREFMIESIKQISIISPE----IKITFKAEKIIFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            N D  +A   ++     +  + +  N +YLL+ + NI      +       + S     
Sbjct: 286 LNDDNIEAKTEVDFETGLQNEIYLAVNSRYLLDFLSNIE-----NSNFTLGFNDSGLPFT 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +            N   ++MP+ I
Sbjct: 341 LESE------------NFMTIVMPIMI 355


>gi|257792998|ref|YP_003186397.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
 gi|257479690|gb|ACV60008.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           subsp. acidocaldarius DSM 446]
          Length = 391

 Score =  207 bits (528), Expect = 2e-51,   Method: Composition-based stats.
 Identities = 74/381 (19%), Positives = 149/381 (39%), Gaps = 26/381 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAI- 57
           MK T    D+ ++L    R++       V  HVL++A   +  ++  AS  ++ +   + 
Sbjct: 1   MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLC 60

Query: 58  ------PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                    +   GS  + A  LY+++++      +    +        I+ G + F L 
Sbjct: 61  VEATDSSVEIARSGSCLLPAKELYEVIKRANGPITVETTTD-----RTVITFGKTKFELV 115

Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                 F P    ++ V +  + +  L  L+ RT +A    + R  L G+   +   D  
Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSQTRPILTGVQLTLA--DGH 173

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRI 228
           L AVATD  RLA   V       +   +++P   +  +   L  S  D  V  +L  S  
Sbjct: 174 LSAVATDALRLAQYTVSCEDVNGEDRQLVIPAVLLDTLATALPASDDDEEVTFTLGTSSC 233

Query: 229 HLNIES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
            ++       M++R ++G +P+   +IP      + V    L  A +RV+I+S    Q  
Sbjct: 234 TVSWGDDAFHMALRGLEGTYPDTARLIPERTAHRVVVERQALLTACERVAILSEADHQRA 293

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +   +   L ++  +   G A E++  +   +  +++  N  Y +  +  +        +
Sbjct: 294 EFRFTMSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDG----IAQ 349

Query: 346 VVFRLDSSNSSVFIRGKDKDS 366
           V   L+       +R   ++ 
Sbjct: 350 VEIGLNGPLQPCLLRPVGEEG 370


>gi|188527661|ref|YP_001910348.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470]
 gi|188143901|gb|ACD48318.1| DNA polymerase III subunit beta [Helicobacter pylori Shi470]
          Length = 374

 Score =  207 bits (527), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 84/395 (21%), Positives = 176/395 (44%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKDKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIEPKVSLEVNAPFLTDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSK---DSSVKVSLSESRIHLNIES 234
           RL+  +++ ++     +  S I+P++A+ EIL++        S   +++ E+ +H     
Sbjct: 177 RLSYTQLEKISIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENEMH----- 231

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +   +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  + 
Sbjct: 232 -TFFTKLIDGNYPDYQKILPKEYISSFTLGKEEFKESIKLCSSLSST----IKLTLEKNN 286

Query: 295 LCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
                 + +    A  S+ +      E    +  N K+ LE ++ + +      + V + 
Sbjct: 287 ALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVLKC 341

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 342 NEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 374


>gi|86150533|ref|ZP_01068757.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
 gi|85838985|gb|EAQ56250.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni CF93-6]
          Length = 355

 Score =  207 bits (526), Expect = 3e-51,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 175/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  TV+A  + D+++ L +   I    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATVNAKSIADVIKSLNNEEVILETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|307637177|gb|ADN79627.1| DNA polymerase III beta subunit [Helicobacter pylori 908]
 gi|325995766|gb|ADZ51171.1| DNA polymerase III beta subunit [Helicobacter pylori 2018]
 gi|325997362|gb|ADZ49570.1| DNA polymerase III beta subunit [Helicobacter pylori 2017]
          Length = 374

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 84/397 (21%), Positives = 173/397 (43%), Gaps = 35/397 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENTLRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYISTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  STDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                +   S E+ +  L +  ++    +     +  L GI    N++   L  V TD  
Sbjct: 117 EFPVIDPKVSLEINAPFLVDAFKKIAPVIEQTSHKRELAGILMQFNQKHQTLSVVGTDTK 176

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS-----KDSSVKVSLSESRIHLNI 232
           RL+  +++ V+     +  S I+P++A+ EIL++         D  + V  +E+      
Sbjct: 177 RLSYTQLEKVSIHSTEEDISCILPKRALLEILKLFYENFSFKSDGMLAVVENETHAFF-- 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                  +LIDG +P+YQ ++P        +     ++++   S +SS     +KL+L  
Sbjct: 235 ------TKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKLCSSLSST----IKLTLEK 284

Query: 293 DKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +       + +    A  S+ +      E    +  N K+ LE ++ + +      + V 
Sbjct: 285 NNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFLEALNALGTT-----QFVL 339

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 340 KCNELSSPFLIQEPLDEKQSHLNAKIST--LMMPITL 374


>gi|218289463|ref|ZP_03493691.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218240331|gb|EED07513.1| DNA polymerase III, beta subunit [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 391

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 75/381 (19%), Positives = 148/381 (38%), Gaps = 26/381 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAI- 57
           MK T    D+ ++L    R++       V  HVL++A   +  ++  AS  ++ +   + 
Sbjct: 1   MKATFRHGDLEKILRQLLRVVPNSTNKAVLKHVLIEAKREEDRVDFYASSEDMSLRRTLF 60

Query: 58  ------PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
                    +   GS  + A  LY+++++      +    +        I  G + F L 
Sbjct: 61  VEATDSSVEIAQSGSCLLPAKELYEVIKRANGPITMETTTD-----RTVIKFGKTKFELV 115

Query: 112 SFPESEF-PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                 F P    ++ V +  + +  L  L+ RT +A      R  L G+   +   D  
Sbjct: 116 GLQPRLFQPYGDADDEVTTATVLAPHLYRLIRRTSYAAGKSLTRPILTGVQLTLA--DGH 173

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL--SSKDSSVKVSLSESRI 228
           L AVATD  RLA   V       +   +++P   +  +   L  +  D  V  +L  S  
Sbjct: 174 LSAVATDALRLAQHTVSCEDVNGEDRQLVIPAVLLDTLAAALPATDDDEEVSFTLGTSSC 233

Query: 229 HLNIES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
            ++       M++R ++G +PN   +IP      + V    L  A +RV+I+S    Q  
Sbjct: 234 TVSWGDDAFHMALRGLEGTYPNTARLIPERMTHRVVVERQALLTACERVAILSEADHQRA 293

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           +   +   L ++  +   G A E++  +   +  +++  N  Y +  +  +        +
Sbjct: 294 EFRFTPSGLTVSATSTQYGHAEETLETIQGTKDDVELLCNVHYWIAALKALDG----IAQ 349

Query: 346 VVFRLDSSNSSVFIRGKDKDS 366
           V   L+S      +R   ++ 
Sbjct: 350 VEIGLNSPLQPCLLRPVGEEG 370


>gi|309776108|ref|ZP_07671099.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
 gi|308916059|gb|EFP61808.1| DNA polymerase III, beta subunit [Erysipelotrichaceae bacterium
           3_1_53]
          Length = 367

 Score =  207 bits (526), Expect = 4e-51,   Method: Composition-based stats.
 Identities = 86/388 (22%), Positives = 174/388 (44%), Gaps = 27/388 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   + + +I+ ++    RI      +P    + + AN   + I  S   + +   I   
Sbjct: 1   MNFKISKKEIVSVMNRISRIFAATVVLPAYRGIRITANTSGVSIVVSDGTVSMQEFIDTE 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           ++   CG   V   L ++IV+K  DG  I   KE +L   + +    +   L  F E ++
Sbjct: 61  IEIYECGECVVDGRLFFEIVKKAADG-MIWIRKEGKL---LKLKSNKAEMKLVIFAEEQY 116

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P+        SF  A+S L++ +++T F+ + ++ R  L G+ FHI ++D  +    +D 
Sbjct: 117 PNIDFSFPKNSFSAAASALEDAIDKTIFSASDQQTRPVLGGLNFHITKQDCTI--TGSDS 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL+   +  + Q  K   + +P+K +     I  S D  + +  SE +  ++  ++ + 
Sbjct: 175 YRLSRIVIPAIGQ--KESVLTIPKKMLSLFTDIF-SGDEELYLHFSERKALISSNNIVLQ 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
             L++G FP+   +IP   +  L++    L  A+DR +      +  + L L +D+L +T
Sbjct: 232 SVLLEGAFPDTSKLIPNKFETALKLETEKLIDALDRTAFNKEDGVTIIGLELLTDELLIT 291

Query: 299 VDNPDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
            ++ ++G +IES+     E   ++CF  N +Y+LE +  + S   +        ++ N  
Sbjct: 292 SESQEVGSSIESIEYIEVEGNQEVCFHCNQQYMLEALKALHSKTCI-----LHYNADNKP 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              +  D               +L+P+R
Sbjct: 347 FIFQPDDDKEHVQ---------LLLPVR 365


>gi|256830859|ref|YP_003159587.1| DNA polymerase III subunit beta [Desulfomicrobium baculatum DSM
           4028]
 gi|256580035|gb|ACU91171.1| DNA polymerase III, beta subunit [Desulfomicrobium baculatum DSM
           4028]
          Length = 384

 Score =  206 bits (524), Expect = 6e-51,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 158/392 (40%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + V + ++++ L  A  II  K        V L+A    + I A+   IE  G  PA 
Sbjct: 1   MFLKVRKEEVIDGLLKASNIIPSKTGAAYLRTVWLKAEGDTISILATDSSIEFVGVYPAV 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + V      +++R+L  G        +     ++I  G   + L +   S F  
Sbjct: 61  ISDGGLVGVQGKKFCELMRRLPPGEITLKL--DPSAKHLHIEQGRRKYKLPANESSWFQD 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +   +  + K +++R  F +A +E    +N I F   E D  +     +GH+
Sbjct: 119 FNPFPAQNAVLWSGDLFKEIIDRIAFCIADDEDLTSMNCIKFAPVENDD-VEICGLNGHQ 177

Query: 181 LAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
             +          +      +V +K + EI + L++ +  +++SLS+ R+ L  E+   S
Sbjct: 178 FGLLRFSNPDIRAVLGQDGFLVSKKYLLEIRKWLTNDE--IEISLSDKRLFLRTENRKES 235

Query: 237 MSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            S+ L    F +Y+N I    D+    L V+   L  A+DR+ + ++   +A       +
Sbjct: 236 FSLPLKAYVFADYRNFINQYKDRFASNLVVDRHELTDALDRIFVFNTEANKATFFDFGPE 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L +     D+G+  E ++  Y      I    K +LEI+ +      V D + F     
Sbjct: 296 ELSLYCQGQDIGEGTELISCQYQGELSKIALPTKVILEILGHF-----VSDSLTFSFVGP 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +    I GKD           N   + MP+ I
Sbjct: 351 SEPCRITGKDDP---------NYMIITMPVEI 373


>gi|228908420|ref|ZP_04072263.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
 gi|228851211|gb|EEM96022.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
          Length = 271

 Score =  205 bits (523), Expect = 7e-51,   Method: Composition-based stats.
 Identities = 74/274 (27%), Positives = 124/274 (45%), Gaps = 16/274 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K+ IP+   + + A+   + + AS   I I   IP S
Sbjct: 1   MEFIVNHKQFTQALSEVSKAISTKSLIPILSGIKITADQSGITLIASNSNIFIEKFIPVS 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
           ++          G+I V A    +I++K+     I    E      + I   +    L  
Sbjct: 61  IEDEKIATILKAGTIVVPAKYFIEIIKKMPSDIAIKSKNEQ----IIKIQSEEITLSLNG 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
           FP  EFP+    +     ++ +  L  + ++T FA+A  E R  L G   HI   + KL 
Sbjct: 117 FPADEFPNVPLIDNHAEIKVETEQLIEVFKQTVFAVAKNESRPVLTG--LHIVLSNNKLI 174

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             ATD HRLA+ E  I + +    + IVP   + E+L++++S    V + LSES I   +
Sbjct: 175 CAATDSHRLAIRETRISSDV--KANCIVPSATISELLKLMNSNSEFVYIYLSESHIIFTL 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
            + ++  RLI+G++PN  N+IP      + V+  
Sbjct: 233 GTTTLYSRLIEGKYPNISNLIPNDFKTIINVDRK 266


>gi|282863706|ref|ZP_06272764.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
 gi|282561407|gb|EFB66951.1| DNA polymerase III, beta subunit [Streptomyces sp. ACTE]
          Length = 373

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 73/385 (18%), Positives = 147/385 (38%), Gaps = 23/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+   ER  + E +  A R++  ++ +PV   +LL A+DG L +     E        A+
Sbjct: 1   MEFLSERGALAESVAWAARVLPARSPVPVLGGLLLDASDGRLRVSGLDFEASAAVEAEAA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G + V    L DI + L DG      +    G+   ++  D+ F L   P  ++P+
Sbjct: 61  TVRPGRVLVMGRRLLDICKVLPDGPVRCAVE----GSRFTVTASDARFGLSVLPLDDYPA 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                 +     A      + +    A   ++    L GI   ++   + L   A+D +R
Sbjct: 117 LPPLPELRGAVDAGEFAAAVADV-AVAAGRDDTLPALTGIRLRLDGSTMTL--AASDRYR 173

Query: 181 LAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            AV  +   A   +    ++V  + + EI R L+     V V+L    +         +V
Sbjct: 174 YAVRTLPWKAADPEVAADVLVSARRLTEIARTLARS-GPVGVALDTGSVGFEHAGARTTV 232

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCM 297
           RL+DG  P++  +   ++      +   L +AV RVS+++      ++L+ +   D   +
Sbjct: 233 RLLDGGLPSHDTLFALADPAVAVTDRAALVEAVRRVSVVADGGS-PLQLTFTGGPDASVL 291

Query: 298 TVDNPDMGKAIESMNVYYNECP-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
                +   A + +         M + FN  YL++ + +       +  +   L  +   
Sbjct: 292 LQAGYEDDVASQRLPATLEGADGMTVAFNPAYLMDALSSFE-----EPTIRLSLMGAGRR 346

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLM 381
             +   +        +     ++LM
Sbjct: 347 AMVTAGED-----TPDTAAHRHLLM 366


>gi|94987228|ref|YP_595161.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia
           intracellularis PHE/MN1-00]
 gi|94731477|emb|CAJ54840.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Lawsonia
           intracellularis PHE/MN1-00]
          Length = 383

 Score =  205 bits (523), Expect = 8e-51,   Method: Composition-based stats.
 Identities = 71/392 (18%), Positives = 157/392 (40%), Gaps = 26/392 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M + + +  I++ L     II  ++       + ++A    L I A+   IE  G   A 
Sbjct: 1   MLLYINKEHIIDGLQKVANIIPARSGAAYLRTLWMKAEHSTLTIMATDANIEFIGNYEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G + V+   L D++R+L        F  +     + +      + +       F  
Sbjct: 61  IKETGLVGVNGRNLIDLIRRLPAKELCLRF--DSTSGTLILEQERRTYKMPINDPIWFQP 118

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   S   ++   + +++R  F ++ +E    ++ ++   +  D  +     +GH+
Sbjct: 119 LTLFPSEESVVWSADFFQEVIDRVSFCISDDEGSDAISCLYIQPS-NDNYINVCGLNGHQ 177

Query: 181 LAVAEVDIVAQIAKMPS--IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL--S 236
            A+          K+PS  I++P+K + E+ + L   ++ ++++++E R          +
Sbjct: 178 FALTRFINNELSEKIPSEGILIPKKYITELRKWL--GETEIEIAITEKRFFARTIDSKET 235

Query: 237 MSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
           +SV      +P+Y   +      N   L++   +  +++DR+SI ++   +     +  +
Sbjct: 236 ISVPRAIFTYPDYTAFLTRLTGDNMSFLKLQRKDCLESLDRISIFNTEGDRCTYFDIKEN 295

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           +L ++    D G A E ++V Y      I F  K L+EI ++  S       +   + S 
Sbjct: 296 ELILSAQGQDTGSANEYLDVTYTGNINKIAFPTKSLMEIFNHFESPT-----ITLAMSSV 350

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                I G         D   +   ++MPM+I
Sbjct: 351 EGPCGITG---------DEDKDYTVIIMPMKI 373


>gi|160902631|ref|YP_001568212.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95]
 gi|160360275|gb|ABX31889.1| DNA polymerase III, beta subunit [Petrotoga mobilis SJ95]
          Length = 370

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 87/390 (22%), Positives = 165/390 (42%), Gaps = 28/390 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M   ++   +   +      + RK   P+   + L   D  L I A+  +      +   
Sbjct: 1   MSFEIDTRVLKNAVQLTSNAVSRKTANPILKGIKLAVEDDELHIYATDLQTGFHKWLKVK 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
             D   S  V   +  +I+  L      S      L   + IS G+S F L +    EFP
Sbjct: 61  DSDENFSTVVEQTIFLEILSNL-----TSDTITITLDGVLKISGGNSVFRLPTMDPDEFP 115

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIR--YYLNGIFFHINEEDLKLCAVATD 177
           S   E    S  L  +++ N++++  F    +       LN +++   +    L  VATD
Sbjct: 116 SLAFEVTGNSILLDRTIITNMIDKVVFCALKDSSSLSRNLNAVYWDFRQGGF-LNLVATD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNI--ES 234
            +RLA++E  +       P  ++  K++ E+  ILSS K   V+V  S S+I  +   ++
Sbjct: 175 SYRLALSESKLEDDNILSP-FLLSLKSMDELKTILSSAKTEKVRVVQSGSQILFDFEEDN 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +   +ID EFPNY ++IP S   +++   +     + R+SI +      + L++   +
Sbjct: 234 NQLIYNVIDAEFPNYLSIIPESFITKIKAKTSEFLAIMKRMSITAGSEEYTL-LNIEDGR 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           +     +PD+G+A E ++V      ++I ++ +Y  E ++ I +       V F  D   
Sbjct: 293 IQFYASSPDVGEAKEEIDVEQEGKNIEIAYSPRYFREALERIET-------VEFEFD--- 342

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               I  ++K +        +  +++MP R
Sbjct: 343 ----ISDEEKPTILKPLEDNSYMFIIMPKR 368


>gi|320009941|gb|ADW04791.1| DNA polymerase III, beta subunit [Streptomyces flavogriseus ATCC
           33331]
          Length = 367

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 77/380 (20%), Positives = 145/380 (38%), Gaps = 25/380 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG 65
           ER  + + +  A R++  ++ +PV   +LL A+ G L +     E        A     G
Sbjct: 2   ERGALTDAVSRAARVLPARSPVPVLGGLLLDADTGRLRVSGLDFEASARVETQAHTVRPG 61

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEE 125
            + V    L  I + L +G  +    E   G+ + ++   S F L   P  ++P+     
Sbjct: 62  KVLVMGRRLLAICKVLPEGP-VECAVE---GSRLTVTGDGSRFGLSILPLDDYPALPPLP 117

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
            V     A     + V +   A   ++    L GI   ++   + L   ATD +R AV  
Sbjct: 118 DVRGTVDAGE-FGSAVAQVAVAAGRDDTLPTLTGIRLGLDGSTMTL--AATDRYRFAVRT 174

Query: 186 VDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG 244
           +   A+       ++V  + + EI R L  +   V VS+              +VRL+DG
Sbjct: 175 LPFEAKAPDVTADVVVSARRLTEIARSL-GRSGRVDVSVDGGSAGFEHAGTRTTVRLLDG 233

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNP 302
             P +  +    +     ++   L +AV RVS+++      ++++ S   D   +     
Sbjct: 234 RLPRHDKLFALGDTAVAVMDRARLVEAVRRVSVVADGGS-PLQMTFSPGPDGSALLQAGF 292

Query: 303 DMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
           +   A + +   ++    M + FN  YL + + +       D  V  RL        I G
Sbjct: 293 EDDVAAQRLPAAFDGAGEMTVAFNPAYLTDALSSFE-----DATVRMRLLGPGQRAMISG 347

Query: 362 KDKDSKNNKDNKVNAFYVLM 381
           +      ++       ++LM
Sbjct: 348 EGAGPSAHE-------HLLM 360


>gi|223038521|ref|ZP_03608815.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267]
 gi|222880378|gb|EEF15465.1| DNA polymerase III, beta subunit [Campylobacter rectus RM3267]
          Length = 355

 Score =  205 bits (522), Expect = 9e-51,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 170/387 (43%), Gaps = 34/387 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+ + ++ +  ++ +    +E+K+   ++ H+ + A DG+L IKA+  EI +   +   
Sbjct: 1   MKVAINKNALESIVTNTNPYLEKKDLSAITSHIFISAKDGILNIKATDHEIGLAYKLSNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ T +   L DI+R L+D         N     + I   +S + L  +   +FP
Sbjct: 61  KIMDEGNATANGKKLLDIIRSLKDEEVTLETVNN----YLYIKQKNSKYKLPMYKFEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    FE+ + +L   +++   ++     ++ LNG    I +  + +  V TD  
Sbjct: 117 NFPAIENKNKFEIDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+V   +   Q     S+I+P+KA+ EI ++   K   +++   ++ +     +     
Sbjct: 175 RLSVFRFETPTQSE--FSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G FP+Y  VIP    + LR++   + + +  VSI+S       K+  +   +    
Sbjct: 230 KLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISEST----KIVFAPQTISFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
              D  +A  ++      E  + +    +YLL+ + +I      +D   F  + SN +  
Sbjct: 286 IVEDNSEAKTTIEFATGLEEEIYVGVKNRYLLDFLQSIE-----EDHFEFGFNDSNLAFT 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   +  +            V+MP+ +
Sbjct: 341 VSSNELKT------------VIMPINL 355


>gi|161833638|ref|YP_001597834.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri GWSS]
 gi|152206127|gb|ABS30437.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri GWSS]
          Length = 366

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 86/385 (22%), Positives = 169/385 (43%), Gaps = 21/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK     +D+L+ L     +I   N +P+     L+     +L I  S  EI +T  +  
Sbjct: 1   MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  +   +L DI++ + +          E+  ++ I + +  + +  +   E+P
Sbjct: 61  NSINYGSAAIPYKILIDILKNIPEQPLTFI---KEIDNKLKIIYQNGEYNISIYSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S  ++   L N++  T FA+  ++IR  +NG+ F IN +      V+T+  
Sbjct: 118 KYSILENTNSILISEKKLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNF--VSTNTT 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            L       +    K+   I+ +K +  +   L + D  V +S ++       +   +  
Sbjct: 176 ILVKYTRKDILSNNKI-KFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G +PNY ++I    +K L +N      ++ RV+  S +  Q + L+LS ++  ++ 
Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + +  KA E +   Y   P+ I FN K+L++I+ NI+      D++ F +  + SS   
Sbjct: 294 WDYNN-KAFEYLFCSYEGDPIKIGFNSKFLIDILSNINC-----DDIKFEILDNKSSCKF 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
                    N  N      ++MP++
Sbjct: 348 TP-------NLSNIEEILILIMPIK 365


>gi|293977750|ref|YP_003543180.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri DMIN]
 gi|292667681|gb|ADE35316.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri DMIN]
          Length = 370

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 170/385 (44%), Gaps = 19/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK     +D+L+ L     +I   N +P+     L+     +L I  S  EI +T  +  
Sbjct: 1   MKFITSSNDLLKELKALFNVINLNNKLPILETFYLKIKKKNILNITVSDLEITMTTKLRI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  +   +L DI++ + +          E+  ++ I + +  + +  +   E+P
Sbjct: 61  NSINYGSAAIPYKILIDILKNIPEQPLTFI---KEIDNKLKIIYQNGEYNISIYSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E   S  ++   L N++  T FA+  ++IR  +NG+ F IN +      V+T+  
Sbjct: 118 KYSILENTNSILISEKQLLNIINNTLFAVGNDDIRPVINGVLFEINSKMSNF--VSTNTT 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            L       +    K+   I+ +K +  +   L + D  V +S ++       +   +  
Sbjct: 176 ILVKYTRKDILSNNKI-KFIISKKTLNILKNNLENSDEYVYISYNKLNTSFLFKKKKIIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G +PNY ++I    +K L +N      ++ RV+  S +  Q + L+LS ++  ++ 
Sbjct: 235 SLINGIYPNYLSIINNFYNKILIINRNYFINSIKRVTYFSKIITQII-LNLSKNQSKISS 293

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            + +  KA E +   Y   P+ I FN K+L++I+ NI+      D++ F +  + SS  +
Sbjct: 294 WDYNN-KAFEYLFCSYEGDPIKIGFNSKFLIDILSNINC-----DDIKFEILDNKSSCKL 347

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
                    +  N      ++MP++
Sbjct: 348 TP-----NLSISNIEEILILIMPIK 367


>gi|283956180|ref|ZP_06373665.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 1336]
 gi|283792334|gb|EFC31118.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 1336]
          Length = 355

 Score =  205 bits (522), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|315639364|ref|ZP_07894526.1| DNA-directed DNA polymerase III beta subunit [Campylobacter
           upsaliensis JV21]
 gi|315480690|gb|EFU71332.1| DNA-directed DNA polymerase III beta subunit [Campylobacter
           upsaliensis JV21]
          Length = 355

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI + ++ +   +      +++K+   V+ H+L +AN+  L IKAS  EI I   I   
Sbjct: 1   MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G  T +A  + D+++ L +   I    +N     + I   ++ + L  F   +FP
Sbjct: 61  RIENPGFATANAKSIADVIKNLNNEEIILETIDNF----LFIRQKNTKYKLPMFNYEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG +  I E   K+  V++D  
Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +         I +P+KA+ E+ ++       +++   E+ +    E+     
Sbjct: 175 RLAIY--TLNKTNDNEFHISIPKKAIMEMQKLFY---EKIEIYYDENMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP    +E  +   +   A+ ++S+++     ++KL  + +K+    
Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFTLQTEDFIDALKKISVVTE----SMKLHFTKNKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   +      E    +    KYLL+ +++I      ++E   +++  N +  
Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKIKYLLDFLNSIE-----ENEFKIKINEPNLAFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   + +             V+MPM
Sbjct: 341 VSSNELEV------------VIMPM 353


>gi|157414324|ref|YP_001481580.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           81116]
 gi|157385288|gb|ABV51603.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 81116]
          Length = 355

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|148926821|ref|ZP_01810500.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           CG8486]
 gi|145844546|gb|EDK21653.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           CG8486]
          Length = 355

 Score =  205 bits (521), Expect = 1e-50,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVLLCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELNFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|57236916|ref|YP_178031.1| DNA polymerase III subunit beta [Campylobacter jejuni RM1221]
 gi|86152375|ref|ZP_01070585.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|86153999|ref|ZP_01072201.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|205355743|ref|ZP_03222513.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|57165720|gb|AAW34499.1| DNA polymerase III, beta subunit [Campylobacter jejuni RM1221]
 gi|85840672|gb|EAQ57924.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 260.94]
 gi|85842537|gb|EAQ59750.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni HB93-13]
 gi|205346520|gb|EDZ33153.1| DNA polymerase III beta chain [Campylobacter jejuni subsp. jejuni
           CG8421]
 gi|307746966|gb|ADN90236.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni M1]
 gi|315057443|gb|ADT71772.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni
           S3]
 gi|315931304|gb|EFV10273.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 327]
          Length = 355

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|124516517|gb|EAY58025.1| DNA polymerase III, beta chain [Leptospirillum rubarum]
 gi|206603406|gb|EDZ39886.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way
           CG']
          Length = 387

 Score =  204 bits (520), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 87/395 (22%), Positives = 168/395 (42%), Gaps = 24/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV++   L+ L     + ERKN + +   +L++A D    + A+  +      +P  
Sbjct: 1   MEITVDQEAFLDGLQRVALLAERKNLVQIGSFILIEARDQKAILFATDNQTGGRFEVPCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  TV+   L+ + R+L  G       EN       I      + L+     E+  
Sbjct: 61  VRTPGKTTVAGKKLHQLFRELPSGKVSLTRLEN---GSTRIERERLMYDLKGIDPEEYVG 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
             E +  YSF ++   +  L+ +T   +  +E +  +NG+ FH       ++L  V TDG
Sbjct: 118 FPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESKP-MNGVLFHRVREGSTVRLNIVGTDG 176

Query: 179 HRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRI 228
           HRL    V +                I+ +K + ++L +L     S   SV+V ++    
Sbjct: 177 HRLHHGTVLLGEDAGYDLAGQTESRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVNPKYA 236

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                      RL+   FPNY++  P   +  +  + + L  ++ R+S++S  + + V  
Sbjct: 237 TFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAEIV-F 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           S  +  L ++  N ++G++ E++ V+    P  + FN   +  ++     + +  D V  
Sbjct: 296 SWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMDAV-M 354

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             D + SS         S  +   + ++ YV+MP+
Sbjct: 355 DPDPAKSSSM------PSIWSCAEEPDSRYVIMPL 383


>gi|313611865|gb|EFR86324.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
           F2-208]
          Length = 256

 Score =  204 bits (519), Expect = 2e-50,   Method: Composition-based stats.
 Identities = 69/267 (25%), Positives = 137/267 (51%), Gaps = 16/267 (5%)

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E     + ++  +VLKN+V +T FA++  E+R  L G+ + I E   KL AVATD HR
Sbjct: 1   LPEVTDGKTIKIPINVLKNIVRQTVFAVSAIEVRPVLTGVNWIIKEN--KLSAVATDSHR 58

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   ++ L    R
Sbjct: 59  LALREIPLETDIDEEYNIVIPGKSLSELNKILDDASESIEMTLANNQILFKLKDLLFYSR 118

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLCMT 298
           L++G +P+   +IP     EL +N     QA+DR S+++      V   ++L + ++ ++
Sbjct: 119 LLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQVEVS 178

Query: 299 VDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
            ++P++G   E++    +    + I FN KY+++ +          D++      +    
Sbjct: 179 SNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQISFSGTMRPF 233

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +R KD  + N          ++ P+R
Sbjct: 234 VLRPKDAANPNE------ILQLITPVR 254


>gi|315123618|ref|YP_004065622.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
 gi|315017340|gb|ADT65433.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           ICDCCJ07001]
          Length = 378

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 75/365 (20%), Positives = 169/365 (46%), Gaps = 22/365 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKD 363
           ++ + 
Sbjct: 341 VKSQG 345


>gi|307591377|ref|YP_003900176.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822]
 gi|306986231|gb|ADN18110.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822]
          Length = 455

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 83/442 (18%), Positives = 174/442 (39%), Gaps = 73/442 (16%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ TV ++ I E L     I+  K + P+  +VL++A D  L +      + +T + P S
Sbjct: 1   MEFTVSQTTISEHLAQIKTILPPKPSYPILSNVLMKAKDQQLILTTFDSSLGLTTSFPVS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT------EVNISHGDSNFYLQSFP 114
           ++  GSI V+  LL  ++ KL         +  E          + +   +S + LQ   
Sbjct: 61  IEEEGSICVNGKLLVGLINKLNATELTFKLETTEDFEEDENPLILIVQAENSIYRLQGIE 120

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +++P     E + S  L S  L + +     + AT+E +  L G+ F  +    KL  +
Sbjct: 121 SNQYPELPILETLLSVTLPSHSLLSALIPVLRSYATDETKQILRGVHFLFS--SSKLELI 178

Query: 175 ATDGHRLAVAEVDIVA----QIAKMPSIIVPRKAVGEILRILSSKDSS------------ 218
           +TDGHRL+++++ +         +   I +P     +++++L                  
Sbjct: 179 STDGHRLSMSKLSLDDLAGIDEIESEGITIPGDTCQQLVKLLRGFKEDVEQPSQSPQEDE 238

Query: 219 ---------------------------------VKVSLSESRIHLNIE-SLSMSVRLIDG 244
                                            VK+S    ++   +     M  RL+ G
Sbjct: 239 CGTRSAPQSESVQGEDEPSPTIDNNFSEPVCSTVKISWDNKQVQFELGAHQMMISRLLQG 298

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV-KLSLSSDKLCMTVDNPD 303
            +PN   ++P      +      +++A++R++I++  +   V + S    ++ +   + D
Sbjct: 299 TYPNAHQLLPSEYPNSINFQVLEMKRAINRLNILNPKKNVLVLECSAQRQQIKLYWLSSD 358

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
             + IE++        + I FN KY  + +  +  +     E+ F     + +  +   +
Sbjct: 359 HHQGIENIPAVVE-RDLTIAFNSKYFHDAVLALPGN-----ELKFEAIDPDQASRLVSLE 412

Query: 364 KDSKNNKDNKVNAFYVLMPMRI 385
            D         +AF +LMP+++
Sbjct: 413 PDC--------SAFVLLMPVKV 426



 Score = 36.0 bits (82), Expect = 9.5,   Method: Composition-based stats.
 Identities = 28/146 (19%), Positives = 51/146 (34%), Gaps = 18/146 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIK--ASGPEIEITGAIP 58
           MK  + R +IL           +KN + V       A    +++   +S     I   IP
Sbjct: 322 MKRAINRLNILN---------PKKNVL-VLEC---SAQRQQIKLYWLSSDHHQGIE-NIP 367

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           A V+   +I  ++   +D V  L  +  +      ++    V++    S F L    + +
Sbjct: 368 AVVERDLTIAFNSKYFHDAVLALPGNELKFEAIDPDQASRLVSLEPDCSAFVLLMPVKVD 427

Query: 118 -FPSTKEEEYVYSFELASSVLKNLVE 142
            FP         S     +  K L +
Sbjct: 428 QFPQVPTVNKEPSLPPNQTKDKELAK 453


>gi|57506227|ref|ZP_00372146.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195]
 gi|57015495|gb|EAL52290.1| DNA polymerase III, beta subunit [Campylobacter upsaliensis RM3195]
          Length = 355

 Score =  203 bits (518), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI + ++ +   +      +++K+   V+ H+L +AN+  L IKAS  EI I   I   
Sbjct: 1   MKININKNTLEAAILLCNAYVDKKDLSTVTSHLLFEANEDKLIIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  G  T +A  + D+++ L +   I    +N     + I   ++ + L  F   +FP
Sbjct: 61  RIENPGFATANAKSIADVIKNLNNEEIILETIDNF----LFIRQKNTKYKLPMFNYEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG +  I E   K+  V++D  
Sbjct: 117 AFPSIENKNKFDIDSSDLSRSLKKVLPSIDTNNPKYSLNGAYLDIKEN--KINFVSSDSK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +         I +P+KA+ E+ ++       +++   E+ +    E+     
Sbjct: 175 RLAIY--TLNKTNDNEFHISIPKKAIMEMQKLFY---EKIEIYYDENMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP    +E  +   +   A+ ++S+++     ++KL  + +K+    
Sbjct: 230 KLINDKFPDYEKVIPQQFKQEFALQTEDFIDALKKISVVTE----SMKLHFTKNKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   +      E    +    KYLL+ +++I      ++E   +++  N +  
Sbjct: 286 ISLDNMEAKTELEKELGVENDFSLTIKIKYLLDFLNSIE-----ENEFKIKINEPNLAFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   + +             V+MPM
Sbjct: 341 VSSNELEV------------VIMPM 353


>gi|283953663|ref|ZP_06371194.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           414]
 gi|283794704|gb|EFC33442.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           414]
          Length = 355

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   I    +N     + I    + + L  F   +FP
Sbjct: 61  RVESNGFATANARSIADVIKSLNNEEVILETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNIEGKNHFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  +  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKTNNQEFNFSIPKKAIIEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++++++      +KL  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKINVVTEK----MKLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    KYLL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVNEEFNLTIKIKYLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|307128509|ref|YP_003880539.1| DNA polymerase III subunit beta [Candidatus Sulcia muelleri CARI]
 gi|306482971|gb|ADM89841.1| DNA polymerase III, beta subunit [Candidatus Sulcia muelleri CARI]
          Length = 375

 Score =  203 bits (517), Expect = 3e-50,   Method: Composition-based stats.
 Identities = 84/385 (21%), Positives = 171/385 (44%), Gaps = 18/385 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND-GLLEIKASGPEIEITGAIPA 59
           MK     +D+   L     +I     +P+    L +     +L I  S  EI +   I  
Sbjct: 1   MKFISSSNDLFRSLKSIYNVININKKLPILETFLFKIKKKNILNITVSDLEITMRTQIKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +    GS  + + +L +I++K+ +          E+  ++ I   +  + +  +   E+P
Sbjct: 61  NSINFGSAAIPSKILIEILKKIPEQPLTFI---KEIDNKLKIISQNGEYNISIYSSEEYP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E   SF ++   L  ++  T FA+  ++IR  +NG+FF IN        ++TD +
Sbjct: 118 KYSKLEKTDSFFISEKKLLKIINYTLFAVGNDDIRPVINGVFFEINYN--ISSFISTDTN 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
            L    +  +    K    I+P+K +  +   L+  D SV +  ++       ++  +  
Sbjct: 176 LLVKYSIKEIFSKKKFF-FIIPKKPLNLLKNNLNYTDKSVLIEYNKYNTSFLFQNKKLIC 234

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G +PNY ++I  + +K L +N      ++ RV + S++    + L+ S  +  ++ 
Sbjct: 235 TLINGNYPNYLSIINNNYNKILIINKNYFINSIKRVILFSNLLTSQILLNFSKSQSKISS 294

Query: 300 DNPDM-GKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + +   KA E +  +Y   P++I FN KYL+EI+ NI+      D++   + ++ +S  
Sbjct: 295 WDINSNNKAFEYLFCHYEGDPIEIGFNSKYLIEILSNINC-----DDIKLEMFNNKTSCR 349

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +         N   K     ++MP+
Sbjct: 350 LTP-----IINLSKKEEILILIMPI 369


>gi|255323606|ref|ZP_05364736.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277]
 gi|255299320|gb|EET78607.1| DNA polymerase III, beta subunit [Campylobacter showae RM3277]
          Length = 355

 Score =  203 bits (516), Expect = 5e-50,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 171/387 (44%), Gaps = 34/387 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+ + ++ +  ++ ++   +E+K+   ++ H+ + A DG+L IKA+  EI +   +   
Sbjct: 1   MKVAINKNALESIVTNSNSYLEKKDLSAITSHIFIGAKDGILNIKATDHEIGLAYELSNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+ T +   L DI+R L+D         N     + I   +S + L  +   +FP
Sbjct: 61  KIMDEGNATANGKKLLDIIRSLKDEEITLETVNN----YLYIKQKNSKYKLPMYKFEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    FE+ + +L   +++   ++     ++ LNG    I +  + +  V TD  
Sbjct: 117 NFPTVENKNKFEVDAVMLGRSLKKIFTSIDNNNPKFELNGALIDIKQNYINI--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+V   +   Q     S+I+P+KA+ EI ++   K   +++   ++ +     +     
Sbjct: 175 RLSVFRFETPTQSE--FSLIIPKKAISEIQKLFFDK---IEIYYDDTTLIAQSANFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G FP+Y  VIP    + LR++   + + +  VSI+S       K+  +   +    
Sbjct: 230 KLINGRFPDYNRVIPQEIKRRLRLSRDKMIEGIKTVSIISEST----KIVFAPQTISFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
              D  +A  ++      E  + +    +YLL+ + NI      ++   F  + SN +  
Sbjct: 286 IVEDNSEAKTTIEFATGLEEEIYVGVKNRYLLDFLQNIE-----EEHFEFGFNDSNLAFT 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   +  +            V+MP+ +
Sbjct: 341 VSSNELKT------------VIMPINL 355


>gi|206603336|gb|EDZ39816.1| DNA polymerase III, beta chain [Leptospirillum sp. Group II '5-way
           CG']
          Length = 387

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 88/395 (22%), Positives = 168/395 (42%), Gaps = 24/395 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ITV++   L+ L     + ERKN + V   +L++A D    + A+  +      +P  
Sbjct: 1   MEITVDQEAFLDGLQRVALLAERKNLVQVGSFILIEARDQKAILFATDNQTGGRFEVPCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G  TV+   L+ + R+L  G       EN       I      + L+     E+  
Sbjct: 61  VRTPGKTTVAGKKLHQLFRELPAGKVSLTRLEN---GSTRIERERLMYDLKGIDPDEYVG 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH--INEEDLKLCAVATDG 178
             E +  YSF ++   +  L+ +T   +  +E +  +NG+ FH       ++L  V TDG
Sbjct: 118 FPEIKADYSFLVSLEQIAGLIRKTLPFVLDDESKP-MNGVLFHRVREGSTVRLNIVGTDG 176

Query: 179 HRLAVAEVDIVAQIA------KMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRI 228
           HRL    V +                I+ +K + ++L +L     S   SV+V ++    
Sbjct: 177 HRLHHGTVLLGEDAGFDLAGQTESRFILRKKTLQDLLHVLDLDLKSGSVSVEVVVNPKYA 236

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                      RL+   FPNY++  P   +  +  + + L  ++ R+S++S  + + V  
Sbjct: 237 TFRWGGFYYYTRLLGTPFPNYRDAFPSQFNLGIECSRSLLESSIRRMSLVSDKKAEIV-F 295

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           S  +  L ++  N ++G++ E++ V+    P  + FN   +  ++     + +  D V  
Sbjct: 296 SWDARSLTLSTRNEEIGESTETLPVFLKGSPGSLVFNTDQIRTLLQVCQGETMRMDAV-M 354

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             D + SS         S  +   + ++ YV+MP+
Sbjct: 355 DTDPAKSSSM------PSIWSCAEEPDSRYVIMPL 383


>gi|291276245|ref|YP_003516017.1| DNA polymerase III subunit beta [Helicobacter mustelae 12198]
 gi|290963439|emb|CBG39268.1| DNA polymerase III, beta chain [Helicobacter mustelae 12198]
          Length = 354

 Score =  202 bits (515), Expect = 6e-50,   Method: Composition-based stats.
 Identities = 78/355 (21%), Positives = 171/355 (48%), Gaps = 21/355 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  V ++    +L H    +++K++  ++ H+ L+  +  L++KA+  EI +   +   
Sbjct: 1   MKFHVNKNHFEIILNHLQPFLDKKDSSQITSHIYLETKEEKLQLKATDYEIGLETKVDIK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            ++ G+ TV+   + +IV++L++G              ++I  G S F L  F  +E+P 
Sbjct: 61  KEIDGNATVNGKKILEIVKRLKEGEITIETDSQN----LHIKQGKSKFKLPMFDANEYPK 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              ++ +      +S     +++   A+ +   +  L G        D     VATD  R
Sbjct: 117 NIVDKNITEIHFDTSSFIQSLKKITPAIDSTNQKPELTGALLEFK--DYSFHFVATDTRR 174

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA+ + DI  Q  +  SII+P+KA+ EI ++ S    ++K+  +E+++ +  E  S   R
Sbjct: 175 LALIKQDI--QSIESFSIILPKKAISEISKLFS---ENIKIFYNETQLIIENEYYSFFTR 229

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---CM 297
           LI+G FP+YQ ++P     +L++    + +A+  ++ +S    Q +K++L   ++    +
Sbjct: 230 LINGRFPDYQKILPKELKIQLQLPKDKVIEAIRLINSLS----QKIKITLRESEVFFETI 285

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD--EVVDDEVVFRL 350
           +++N +  +             + I  + +++L+ +  I ++  E+  +EV    
Sbjct: 286 SIENSEQAQTQFEYQTNIK-EEISIGVDSRHILDFLAQIDTNIFEICINEVTTPF 339


>gi|308069816|ref|YP_003871421.1| DNA polymerase III subunit beta [Paenibacillus polymyxa E681]
 gi|305859095|gb|ADM70883.1| DNA polymerase III, beta subunit [Paenibacillus polymyxa E681]
          Length = 372

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 81/396 (20%), Positives = 174/396 (43%), Gaps = 37/396 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I V+ + + E L  A + I  K  IP+    L++A +  + +  +     I   +  +
Sbjct: 1   MNIVVDSALLAEALEDASKAISTKAIIPILSCFLIEATEDRVTVTGTDDRATIQSFVEEN 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           +D    GS  +   +L DI++K+    ++    + + G +V I   +    +   P  E+
Sbjct: 61  IDIKETGSAALP-KVLLDILQKINGKIEL----QVKNGNQVTIKSRNKEIEITGMPPEEY 115

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATD 177
           P+  E       E+    LKNL+++T FA   +      + G+   +     K+  VAT+
Sbjct: 116 PAPPEINENEFVEIKGKDLKNLIKKTVFAADIDGKSLPIITGVNVILQ--TGKIQMVATN 173

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES------RIHLN 231
            HRLA AE +    I  + + ++  + + E+ +I++  D  V+   S+S           
Sbjct: 174 RHRLAHAEREF--DIGNIGTAVIEARGIIELQKIVNDNDE-VEFGFSKSSGGEVIYAFAR 230

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSL 290
            E      R+++G +P+  + +      E+ VN   L ++++ +  ++   +  AV  S+
Sbjct: 231 TERFIFYSRVLEGIYPDTTHTMAIKAVTEITVNRKELIESLELIFTLAKEEKNNAVTFSV 290

Query: 291 SSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           S  ++ +     + GKA E++  + +N    ++  N KY+L+ +  +      +D +   
Sbjct: 291 SEKEINIRGKGKETGKATENITPISFNGENFNLTLNAKYVLDALKVLE-----NDVITLG 345

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              S   + +R  +           ++FY+++P R+
Sbjct: 346 YTGSLKPLTLRSDE-----------SSFYIVLPYRV 370


>gi|284925305|gb|ADC27657.1| DNA polymerase III beta subunit [Campylobacter jejuni subsp. jejuni
           IA3902]
          Length = 355

 Score =  202 bits (513), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      ++L  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MRLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    K+LL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|218778134|ref|YP_002429452.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
 gi|218759518|gb|ACL01984.1| DNA polymerase III, beta subunit [Desulfatibacillum alkenivorans
           AK-01]
          Length = 370

 Score =  201 bits (512), Expect = 1e-49,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 156/390 (40%), Gaps = 27/390 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++T+ +  +L  +  A  +  +    P    + ++A    L I+A+  +      +   
Sbjct: 1   MQLTIPKQALLRAVLAAEHVAAKDKNFPALGGIRMEAGHQSLTIQATDLDTGYASVLTLE 60

Query: 61  -VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G+    A  L  ++    +       +         I+   +   L      +FP
Sbjct: 61  DIQEPGAALPPAQQLKAVIMDWPEEDARLSVE----NGFPTITGERTRTSLAGMDPEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFA--MATEEIRYYLNGIFFHINEEDLKLCAVATD 177
              E +    F++    L+ L+ +T  +  +   E R ++ G   H+  +   L    TD
Sbjct: 117 EIPEPDQADWFKVPGVTLETLLRQTLLSRRVPESESRPHMVGA--HLARDGEHLVITTTD 174

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           G +LA     I         II+ +    +++    +    V + ++ S +    ++  +
Sbjct: 175 GCQLARGSFPIQDARLPEKGIILHKTGAAKLMEFAKNAPGDVALGVTSSHLSAESQNERL 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
             RL+ G++P+   +IP   D    +N      A+ RV I++S + QA  L+L   ++ +
Sbjct: 235 ISRLVQGDYPDTARIIPV-LDTGFAINRFEFLAALKRVGILTSEKYQAASLALEHSRITV 293

Query: 298 TVDNPDMGKAIESMN---VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           TVDNP++G + E+++     ++  P   C+N   L   +  ++S     + V  +   + 
Sbjct: 294 TVDNPELGSSSETLDHLESPFDGNPFTGCWNPHRLARALAVMTS-----ENVEVKARDAA 348

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S + + G+                ++MPM+
Sbjct: 349 SPLVLSGE---------KDPGYLALVMPMK 369


>gi|121612492|ref|YP_999721.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|167004698|ref|ZP_02270456.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           81-176]
 gi|87249053|gb|EAQ72015.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 81-176]
          Length = 355

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 175/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + +   ++ + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFVRQKNTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      ++L  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MRLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    K+LL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|88597670|ref|ZP_01100903.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|218561695|ref|YP_002343474.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|88189974|gb|EAQ93950.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 84-25]
 gi|112359401|emb|CAL34183.1| DNA polymerase III, beta chain [Campylobacter jejuni subsp. jejuni
           NCTC 11168]
 gi|315930329|gb|EFV09417.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           jejuni 305]
          Length = 355

 Score =  201 bits (511), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 174/385 (45%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L IKAS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIKASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + +    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSIADVIKSLNNEEVVLETIDNF----LFVRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      ++L  + DK+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MRLHFNKDKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    K+LL+ + +I      +++    ++  NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVNEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|152991599|ref|YP_001357320.1| DNA polymerase III subunit beta [Sulfurovum sp. NBC37-1]
 gi|151423460|dbj|BAF70963.1| DNA polymerase III, beta subunit [Sulfurovum sp. NBC37-1]
          Length = 355

 Score =  200 bits (510), Expect = 2e-49,   Method: Composition-based stats.
 Identities = 85/385 (22%), Positives = 169/385 (43%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI  ++  I  +L +    +E+K+   ++ H+L  + +    +KA+  EI +       
Sbjct: 1   MKIRAQKQIIESILINLQPFLEKKDASQITSHILFSSQNDKCIVKATDSEIGLQIVTDHI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            ++  GS T +   L DI+R L+D   I    +N     + +    S F L +F  + +P
Sbjct: 61  LIESEGSFTANGKKLLDIIRILKDDEIIMEILDNT----LIVKQKHSKFKLPTFDPNAYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    +      L S  L   +++   A+ T   ++ LNG   +I  +   L  V TD  
Sbjct: 117 AFPSVDEKPQITLDSLSLIQNLKKISPAIDTNNPKFELNGALINIKHDSTDL--VGTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+A   I    ++  S+IVP+KA+ EI ++       + +   E+ + +  E+     
Sbjct: 175 RLAIA--SIPGNNSEELSLIVPKKAILEIQKLFLD---QINIYYDETNLIITNENYFFYT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           RLI+G+FP+YQ +IP S    + +    +  ++  ++ +S      +K++L SD +    
Sbjct: 230 RLINGKFPDYQRIIPASVKHSITLPKKEMIDSIKMITTISQE----IKMTLLSDAIIFNS 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++ FN +Y+L+ I  I  +E +        +  +    
Sbjct: 286 LSADNVEAKTEIEIGTGLNEKYELSFNSRYILDFISQIDKNEFL-----LEFNEPSLPFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++              N   ++MP+
Sbjct: 341 VK------------DENFITIIMPI 353


>gi|89098180|ref|ZP_01171065.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
 gi|89087037|gb|EAR66153.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
          Length = 368

 Score =  200 bits (510), Expect = 3e-49,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 155/392 (39%), Gaps = 34/392 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +E+  + + +    +++  K++IP+   VL+QA    L   AS     I   +P  
Sbjct: 1   MKFKMEKDRLQDTVKKIEKVLNIKSSIPILAGVLVQAKADCLLFTASDGTESIIHRVPLD 60

Query: 59  ---ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ--SF 113
               +++  GS  V     +D+ +KL+         +     +V +S   +   L+    
Sbjct: 61  EGAVNIESEGS-AVFTKDCFDVTKKLKGSISFELIDQ-----KVIVSQDKTKTRLEFGVM 114

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              ++P    E        +     N+V +T FA ++ E+R  L GI    +++      
Sbjct: 115 DAEDYPKVAIESTSNPIIFSGKEFFNIVNKTSFAASSSELRPILQGIHMSFSKDGNNF-- 172

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD HRL         Q  +  S+ V  K + ++L+      + V V  +E  I     
Sbjct: 173 VATDSHRLGKVT---TGQSEETMSVTVHAKKLEQVLKSF-DFSTEVLVFPTELNIAFANG 228

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
                 RL+DG FP+   +IP    ++L +N      ++D +S +S      V LS++  
Sbjct: 229 HTIYYTRLLDGTFPDTSRLIPKEFKQKLVINREEFFDSIDMLSAISRE--GIVMLSINGL 286

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            + +         + E     +    +++ F+ KY+L+ +       +    +    +  
Sbjct: 287 FVELAALGDTAKGSREIAYESFEGESLEVGFSAKYVLDALK-----SIDSSSISIGFNGG 341

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            S   I+   ++             +++P+R+
Sbjct: 342 MSPFVIQPLSEEITE--------LQLILPVRL 365


>gi|153952198|ref|YP_001397275.1| DNA polymerase III subunit beta [Campylobacter jejuni subsp. doylei
           269.97]
 gi|152939644|gb|ABS44385.1| DNA polymerase III, beta subunit [Campylobacter jejuni subsp.
           doylei 269.97]
          Length = 355

 Score =  200 bits (508), Expect = 4e-49,   Method: Composition-based stats.
 Identities = 76/385 (19%), Positives = 173/385 (44%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+++ ++ +   +      +E+K++  ++ H+   A++  L I+AS  EI I   I   
Sbjct: 1   MKLSINKNTLESAVILCNAYVEKKDSSTITSHLFFHADEDKLLIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + D+++ L +   +    +N     + I    + + L  F   +FP
Sbjct: 61  RVESSGFATANAKSITDVIKNLNNEEIVLETIDNF----LFIRQKSTKYKLPMFNHEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+  V TD  
Sbjct: 117 NFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +    E+     
Sbjct: 175 RLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAKNENFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  + +K+    
Sbjct: 230 KLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFNKNKIIFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +        ++    K+LL+ + +I      +++    +   NS+  
Sbjct: 286 ISLDNMEAKTELEIQTGVSEEFNLTIKIKHLLDFLTSIE-----EEKFTLSVSEPNSAFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +                ++MPM
Sbjct: 341 VKSQGLS------------MIIMPM 353


>gi|157164122|ref|YP_001465927.1| DNA polymerase III subunit beta [Campylobacter concisus 13826]
 gi|112801712|gb|EAT99056.1| DNA polymerase III, beta subunit [Campylobacter concisus 13826]
          Length = 355

 Score =  200 bits (508), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 72/365 (19%), Positives = 160/365 (43%), Gaps = 22/365 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+ + ++ +  ++ +    +E+++   ++ H+ + A DG+L IKA+  EI +   +   
Sbjct: 1   MKVLINKNMLESIVTNTNPYLEKRDLSAITSHIYISAKDGVLNIKATDHEIGLAYKLSNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G  T +   L DI++ L+D         N     + I   +S + L  +   +FP
Sbjct: 61  KIVDEGYATANGKKLLDIIKSLKDEEVTLETVNN----YLYIKQKNSKYKLPMYKFEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F + + +L   +++    + +   ++ LNG    I +  + +  V TD  
Sbjct: 117 EFPTIEGKSKFNIDAIMLGRSLKKILPCIDSNNPKFELNGALLDIKQNYINI--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV       + +   S+I+P+KA+ EI ++   K   +++   E+ +    ++     
Sbjct: 175 RLAV--FKFANEASNEFSLIIPKKAINEIQKLFFDK---IEIYYDENVLIAQSQNFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y+ VIP        ++   + + +  +S++S      +K++ S + +    
Sbjct: 230 KLINGKFPDYERVIPKDIAIRFELSRDKMVEGIKTISMLSDQ----MKITFSKENITFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
              D  +A   +      E  + I    + L++ + +I      D++  F     N    
Sbjct: 286 IIEDNSEAKTMIEFQTGLEEDISINVKNRNLIDFLQSIE-----DEKFEFGFKDKNLPFV 340

Query: 359 IRGKD 363
           +  K+
Sbjct: 341 VSSKE 345


>gi|310779069|ref|YP_003967402.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
 gi|309748392|gb|ADO83054.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
          Length = 371

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 85/391 (21%), Positives = 167/391 (42%), Gaps = 28/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA-NDGLLEIKASGPEIEITGAIPA 59
           M I V+R + L+ L    + I      P+   V L+A  DG + ++ +  E+ IT  +  
Sbjct: 1   MNIKVDRQEFLKTLRVVEKAIAENKIRPIISCVYLEAQEDGKIVLRGTNLELTITSFMEG 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G    S  L+ + ++++ D       KE      + I   DS+         E+P
Sbjct: 61  EVQEKGKAVFSYQLVEEYLKEITDKEINLVVKEGL----LIIETSDSSSEFSVMEPEEYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             K+         +   L  ++E+T F  +T      +N +   I  ED K+  VATD +
Sbjct: 117 RIKDSIEGTGIVFSREKLSEMLEKTKFGASTSIDNLSINCVRIEI--EDKKVKVVATDTY 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESLSMS 238
           RL   E DI  +      + +P   V  +++ L +  + +V+    E+++   + +  + 
Sbjct: 175 RLVYLEDDI--EYDGSLKVSIPLTTVDALIKTLRTLDEENVEFKFEENQVFFKVGNSMVL 232

Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDK 294
            R+ID  FP+Y  ++   S++K++  N     + + RV I    +S    +   SL +  
Sbjct: 233 SRVIDLPFPDYNGIMKSVSHNKKISANTEEFSKILKRVQIFVKNNSESKYSAIFSLEAGS 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             ++  + +  K  E + V      + I  N K+LL+ I ++  +    D ++  L +SN
Sbjct: 293 FYVSGVS-ETAKVNEHIEVEQEGEDVKISLNVKFLLDFIQHLDKN----DRLIIDLLTSN 347

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S++ ++    +            Y+ MP+ +
Sbjct: 348 SAIQLKNSKDE---------KYLYIAMPLAL 369


>gi|196048109|ref|ZP_03115287.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|196021365|gb|EDX60094.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
          Length = 377

 Score =  199 bits (507), Expect = 5e-49,   Method: Composition-based stats.
 Identities = 79/399 (19%), Positives = 177/399 (44%), Gaps = 37/399 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ ++ ++ +++ L    +   + N IP+   + ++A +  + +  S  E  I   I   
Sbjct: 1   MEFSISKNILVDALTKVSKYTAKSNAIPILGGIYVEAKNNTVILVGSNKESTIQMKIDSQ 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV+  G+I +    + DIVRKL +G      ++  L   +++S  +S F L + P  
Sbjct: 61  DNLSVEKEGAIVIP-KTISDIVRKLPNGEICFKLQKKGL---LDVSTKNSKFSLNTLPSE 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P+ ++ ++++   +  + L   VE T++  AT++ R  L GI   I   + K+   AT
Sbjct: 117 EYPNFEQGKFLFQVGIEMADLIQAVEGTYYCAATDDARPALRGI--EIKITNKKIAFSAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           +GH L+   + +     +      + IVP K + + ++  ++   ++ +   E+ + L  
Sbjct: 175 NGHLLSQCRIALENDTNEEEKLLQAAIVPAKWIHDAIKNFNND--TLTLGFEENAVTLFS 232

Query: 233 ESLSMSVRLIDGEFPNYQNV--IPCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAVKL 288
            +  +  +LI+G FP+++     P S       +   L + +++V I+ S      A  +
Sbjct: 233 STQYIKTQLIEGNFPDFKPFLEFPQSIVSSFTTDKAELIKGLEQVDIICSTAEPKAAASI 292

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEV 346
              + +L ++ +N   G+ +       N     + + FN  YLL  + ++S      +EV
Sbjct: 293 MYENSELILSNNNKSQGEVVIKTPTTLNGDKEDIKVGFNVNYLLNHLKSLSG-----EEV 347

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                     + + G  ++             +++P+R+
Sbjct: 348 TLGYIGDIKPIILNGNREEEFK----------LMLPVRL 376


>gi|298529212|ref|ZP_07016615.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans
           ASO3-1]
 gi|298510648|gb|EFI34551.1| DNA polymerase III, beta subunit [Desulfonatronospira thiodismutans
           ASO3-1]
          Length = 386

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 79/394 (20%), Positives = 171/394 (43%), Gaps = 29/394 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + + D +E +  A  +I  K        +  + +   + I ++   +E TG   A 
Sbjct: 1   MKIIIYKEDFVEGISKASNLIPTKTGAAYLRTIWFKTDMDSVRIMSTDSNVEFTGEYRAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   G I      + D++RKL+ G    +   +E    + +     +F L     S FP 
Sbjct: 61  IVEEGLIGTPGRKISDLIRKLKSGPITMYS--DEKNDILYVQQEKRHFKLPLSESSWFPE 118

Query: 121 TKEEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E     +   +     K+++E++ F ++ ++    +  +      ++ ++   A +GH
Sbjct: 119 LDEFPEENALAGIPGIKFKDILEKSLFCISDDDTMQGMTCLKI-APGDENQVEFCAFNGH 177

Query: 180 RLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS- 236
           +L++   +     +I     I++ +K + ++ + +   D  +++++++S+I         
Sbjct: 178 QLSLYIHESSGLREILPEKGIMIAKKYLMDLRKWVPESD--IQITITDSKIFFRTLDKKE 235

Query: 237 -MSVRLIDGEFPNYQNVIPCSNDK---ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             S+ L   +FPNY++ I   ++K    L     +L  +++R+ I ++    +  + L  
Sbjct: 236 CFSLPLNMHQFPNYRDFINNYSEKLGGPLVTTKNDLMDSLERILIFNTDSQMSTLMRLGQ 295

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +++ MT    D G+A E +   Y     ++ FN K LLEI+ +I      DD VV +   
Sbjct: 296 EEIYMTSTAVDSGEAEEVVGCSYQGNLKEVVFNTKSLLEILGHID-----DDNVVMKFSG 350

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVL-MPMRI 385
                 I G++             +YV+ MP++I
Sbjct: 351 PIEPCRINGENDQK----------YYVMTMPVQI 374


>gi|461954|sp|P34029|DPO3B_SPICI RecName: Full=DNA polymerase III subunit beta
 gi|49347|emb|CAA79522.1| DnaN protein [Spiroplasma citri]
 gi|745457|prf||2016285B DNA polymerase III:SUBUNIT=beta
          Length = 363

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 83/389 (21%), Positives = 168/389 (43%), Gaps = 33/389 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M + ++R  IL+ L    RII +K  IP    +L++     +    S  +  I   I   
Sbjct: 1   MIVNIKRDKILDELLKVSRIISQKTLIPSLLGILIEVKKDKITFTTSDGDTSIKSEIMGN 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             ++   GS+ +    + +++RK++D        E   G  + I   + +  L +   ++
Sbjct: 61  DLNITRIGSVLIKNKFIVEVIRKIEDEFITLEVVE---GNLIKIKANNFDSVLNTLNSAD 117

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           +P    E         S+VLK ++ +T FA+  +E R   NG+    ++ + +L   ATD
Sbjct: 118 YPHLSFETEGKEIIFTSTVLKEIISQTSFAIGEKEKRIVFNGLNIKTDQNNKELIITATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
             RL+  ++D          +I+P K + EI R++S  D   ++ L    I +N +    
Sbjct: 178 SFRLSCKKIDYSNNY--NFDVIIPGKFINEIGRLISENDQVSELLL----IIINCKQ--- 228

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLC 296
             ++I+G++P+   VI  S +  L +N   + + ++R S++S+      V L +   K+ 
Sbjct: 229 --KIIEGKYPDTSKVIRTSFNTSLTINNRAIIKIIERRSVLSNETMTTIVTLKIKEQKVL 286

Query: 297 MTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           +T    ++G   E + +         I FN KY+L+ +    +      E+  ++     
Sbjct: 287 VTSFTQEIGNTEEEIRDFKVEGTDQIIAFNSKYILDALKAFKTK-----EITIKMIDERK 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + I   D  +            +++P+R
Sbjct: 342 PLIITANDDQTLQQ---------LVLPIR 361


>gi|269120611|ref|YP_003308788.1| DNA polymerase III subunit beta [Sebaldella termitidis ATCC 33386]
 gi|268614489|gb|ACZ08857.1| DNA polymerase III, beta subunit [Sebaldella termitidis ATCC 33386]
          Length = 374

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 79/391 (20%), Positives = 164/391 (41%), Gaps = 28/391 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            I V R D L+ L      +      PV   + ++A +  + +K +  E+ I   I   V
Sbjct: 3   NIKVNRKDFLKGLQIVENAVSENKIRPVISGIFIEARENEIFLKGTDLELSINFKINGEV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G I +   L+ + +++++D     F +  E   ++ I  G  N    ++    +P+T
Sbjct: 63  KENGKIVIKYKLIEEFLKQIED----EFIELIEESGKIIIKTGKINSEFSTYDPENYPAT 118

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              E    +      L   +E+   A +       +N I F I E  LKL  V++D +RL
Sbjct: 119 PTLELGVEYNFDKQKLLESIEKARIAASLTPENLAVNCIRFEIEENKLKL--VSSDTYRL 176

Query: 182 AVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
              E ++  +       S+ +P K +  +L+I+  + +  + +    ++++  +  + + 
Sbjct: 177 IYLEEELDEEEKNKESLSVSIPLKTMDGLLKIMKLTSEDKIVLKSDGTKVYFQMGDVEIL 236

Query: 239 VRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRI---QAVKLSLSSDK 294
            R+I+ +FP+Y+ ++     DK++ +N  +    + R  I          +   S  +DK
Sbjct: 237 TRVIELQFPDYKAILTGAQYDKKILLNTKDFISVLKRTLIFVRDNYEAKNSGIFSFENDK 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +   + +  K  E + +      + I  N K+LL+ I  I+ +         ++ +S 
Sbjct: 297 LFLNGIS-ENAKIKEEIPIIKEGEDIKISLNVKFLLDYISTITGEVT-----QLKMLNSK 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SSV I  +  D          + Y+ MP+ +
Sbjct: 351 SSVLITEEKND---------KSLYLTMPLAL 372


>gi|319440151|ref|ZP_07989307.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM
           44702]
          Length = 262

 Score =  199 bits (507), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 61/268 (22%), Positives = 117/268 (43%), Gaps = 22/268 (8%)

Query: 132 LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
           +  ++   ++ +   A   ++    L GI   I+ E + L   ATD  RLAV  VD    
Sbjct: 1   MDPNLFAEVISQVAVAAGRDDTLPMLTGIRMEIDGEHVVL--AATDRFRLAVRTVDWAPA 58

Query: 192 IAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLS-------ESRIHLNIESLSMSVRLID 243
            A + + +++P + + +  R L S    V+++L           + +  +    + RLID
Sbjct: 59  RADISAELLIPARTLADTARSLDSNGEPVEIALDTDAASGGSRLLGIATDDRRSTTRLID 118

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
            +FP ++ ++P  N     V  T L  A+ RVS+++    Q ++++     L ++    D
Sbjct: 119 ADFPKFRPLLPKQNTALATVEITPLLDAIRRVSLVTEGNSQ-IRMAFEEGGLTISGGGSD 177

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
           +G A E +   +   P+ I FN  YL + +  I +     D VVF     +    +  + 
Sbjct: 178 IGVAEEQLPCAFVGEPLVIAFNPGYLKDGLGAIHT-----DRVVFGFTQPSRPAILFPEP 232

Query: 364 KDSKNNKDN------KVNAFYVLMPMRI 385
           +D      +      +    Y+LMP+R+
Sbjct: 233 EDLPEAGPDGAFPTPETPFTYLLMPVRL 260



 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 24/180 (13%), Positives = 58/180 (32%), Gaps = 16/180 (8%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG---PEIEITGAIPASVDVC 64
           +   E++        R +T+P+   + ++ +   + + A+      +      PA  D+ 
Sbjct: 4   NLFAEVISQVAVAAGRDDTLPMLTGIRMEIDGEHVVLAATDRFRLAVRTVDWAPARADIS 63

Query: 65  GSITVSAHLLYDIVRKL-QDGAQISFFKENEL---GTEVNISHGDSNFYLQSFPESEFP- 119
             + + A  L D  R L  +G  +    + +    G+ +     D         +++FP 
Sbjct: 64  AELLIPARTLADTARSLDSNGEPVEIALDTDAASGGSRLLGIATDDRRSTTRLIDADFPK 123

Query: 120 --STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
                 ++      +  + L + + R                I     E  L +    +D
Sbjct: 124 FRPLLPKQNTALATVEITPLLDAIRRVSLVTEGNSQ------IRMAFEEGGLTISGGGSD 177


>gi|224418814|ref|ZP_03656820.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT
           98-5491]
 gi|253826662|ref|ZP_04869547.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT
           98-5491]
 gi|313142333|ref|ZP_07804526.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491]
 gi|253510068|gb|EES88727.1| DNA polymerase III subunit beta [Helicobacter canadensis MIT
           98-5491]
 gi|313131364|gb|EFR48981.1| DNA polymerase III [Helicobacter canadensis MIT 98-5491]
          Length = 355

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 79/385 (20%), Positives = 169/385 (43%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M I ++ S +  +       +++K++  ++ H+ L+  +  L  KA+  E+ +       
Sbjct: 1   MNIIIQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRENQLICKATDFEMGLCSTTNSL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G  TV+   + DI+++L++G    +         ++I    S+F L  F   EFP
Sbjct: 61  TINEQGIATVNGKQILDIIKRLKEGEINLYTNNEN----LHIKQNKSSFKLPMFNAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  E E +   E+ S  L N +++    + T   +  LNG    I E       VATD  
Sbjct: 117 SFPEYETLPKLEINSLELINSMKKIFPVIDTNNQKRELNGALLDIKE--YSYNFVATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   V          ++I P+KA+ EI R+       +++  +E  I +  ++     
Sbjct: 175 RLA--MVKFENPSGNNLALIFPKKAITEIQRLFFDH---IELFYNEKNIVIKSQNYVFFS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G+FP+Y+ ++P     EL +  T + + +  ++ +++     VK++   +++    
Sbjct: 230 HLINGKFPDYEKILPKEIQTELTIPKTKIIEGIKVINSVTND----VKITFKPNEIFFES 285

Query: 300 DNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +       ++I  N +++L+ +  I + + +       L+  N+   
Sbjct: 286 LSQDNSEAQTQIEINLPITEEIEIGINSRHVLDFLSQIETTDFIWG-----LNGKNAPFI 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++              N   V+MP+
Sbjct: 341 LKS------------GNFSTVVMPI 353


>gi|262066101|ref|ZP_06025713.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291380196|gb|EFE87714.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 381

 Score =  199 bits (506), Expect = 6e-49,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 172/400 (43%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + I+     P+   V  +  D  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLTAVRTVEKSIKDNLIKPILSCVYAKVKDNKVYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +   A ++ + +++++D   +      E G  + I   DS      F   ++P
Sbjct: 61  EVIKEGEVAFRASIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFTTEDYP 117

Query: 120 S----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S        E  + FE+ S  L  + E+  F+  T +    +N I   I   +  L  V+
Sbjct: 118 STFEYINLNENNFKFEMPSQELVEIFEKVLFSADTPDNI-AMNCIR--IESNNKTLNFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234
           T+ +RL   + D+  +I    ++ VP  A+  +++I+   D+  +K+    + ++   + 
Sbjct: 175 TNTYRLTYLKKDVENEIND-FAVSVPADAISSVVKIVKGLDNELIKIYKEGAHLYFKYKE 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS--------SVRIQA 285
            ++  +LI+  FPNY +++   + DK+L +N       + RV I S        S   Q 
Sbjct: 234 TTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMESKYSSTYQF 293

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                   KL ++  N D+ +  E +N+ +    + I  N KYLLE I NI  ++    E
Sbjct: 294 KHSDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIPKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++     +NS+V +  KDK+         +  Y+LMP+ +
Sbjct: 349 LILEFMYANSAVKVYEKDKE---------DYIYILMPLAL 379


>gi|325123495|gb|ADY83018.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 233

 Score =  199 bits (506), Expect = 7e-49,   Method: Composition-based stats.
 Identities = 77/249 (30%), Positives = 141/249 (56%), Gaps = 27/249 (10%)

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207
           MA +++R+YL G    I+E  L+  AV TDGHRLA+ E+   +  +++   IVPRKAVGE
Sbjct: 1   MAVQDVRFYLTGTLLEIDENQLR--AVTTDGHRLALCEITASSTSSQLVQAIVPRKAVGE 58

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIES-----------LSMSVRLIDGEFPNYQNVIPCS 256
           + R+LS +D  + + +    +++ I +           +  + +LIDG+FP+Y+ VIP  
Sbjct: 59  LQRLLSIEDEQLTLLIGRELLNVTINTPSRDKEQGDITVRFTTKLIDGKFPDYRRVIPRG 118

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            DK + ++    +Q++ RV+I+S+ +++ V L+ + D L +  +NP+  +AIE + + Y 
Sbjct: 119 GDKHVLISHDVFKQSLQRVAILSNEKLRGVFLNFNQDSLQLRANNPEQDEAIEDLAIQYQ 178

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             P+++ FN +YLL+++  +       D+V   +  +N SV ++              + 
Sbjct: 179 NIPLEMSFNAQYLLDVLGVLDG-----DDVNMSMTEANQSVLVQDP---------AHPDQ 224

Query: 377 FYVLMPMRI 385
            YV+MPMR+
Sbjct: 225 TYVVMPMRV 233


>gi|222823048|ref|YP_002574621.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100]
 gi|222538269|gb|ACM63370.1| DNA polymerase III, beta subunit [Campylobacter lari RM2100]
          Length = 355

 Score =  198 bits (505), Expect = 8e-49,   Method: Composition-based stats.
 Identities = 83/385 (21%), Positives = 172/385 (44%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MKI+V ++ +   +      +++K++  ++ H+L +  D  L I+AS  EI I   I   
Sbjct: 1   MKISVNKNTLESAIVLTNSYVDKKDSSNIASHLLFEVVDDKLIIRASDYEIGINYKIKKI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V+  G  T +A  + DI++ L +   I    EN     + I    + + L  F   +FP
Sbjct: 61  KVENSGFATANAKSILDIIKSLNNEDVILETIENF----LFIRQKGTKYKLPMFNYEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +    E    F++ SS L   +++   A+ T   +Y LNG    I      +  V TD  
Sbjct: 117 NFPSTEGKDKFDIDSSDLSRSLKKILPAVDTNNPKYSLNGALLDIK--TTHINFVGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLAV    +     K  ++ +P+KA+ E+ +I       +++   E+ +    ++     
Sbjct: 175 RLAV--FTLNKTSEKEFNLCIPKKAILEMQKIFF---EKIEIYYDENMLIAKNDNFEFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+ +FP+Y+ VIP +  KE      + + A+ ++++++      +KL    DKL    
Sbjct: 230 KLINDKFPDYERVIPKNITKEFIFKTEDFQDALKKINVITEK----MKLIFHKDKLVFEG 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +  N +   ++C   K++ + +++I S+          ++  + +  
Sbjct: 286 ISLDNMEAKTELEMELNVDEEFNLCIKNKFITDFLNSIESETF-----KLSINEPHMAFL 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +  ++  +            V+MP+
Sbjct: 341 VSSEELQT------------VIMPV 353


>gi|237739903|ref|ZP_04570384.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
 gi|229423511|gb|EEO38558.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
          Length = 381

 Score =  198 bits (505), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 171/400 (42%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + I+     P+   V  +  D  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLTAVRIVEKSIKDNKIKPILSCVYAKVKDNKVYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +  S  ++ + +++++D   +      E G  + I   DS      F   ++P
Sbjct: 61  EVIREGEVAFSPSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFTTEDYP 117

Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
               +    E  + FE+ S  L  + E+  F+  T +    +N I   I   +  L  V+
Sbjct: 118 NTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPDNI-AMNCIR--IESNNKTLNFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234
           T+ +RL   + D+  +I    ++ VP   +  I++I+   D+  +K+   ++ ++   + 
Sbjct: 175 TNTYRLTYLKKDVEKEIND-FAVSVPADTISSIVKIVKGLDNELIKIYKEDAHLYFKYKE 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS--------SVRIQA 285
            ++  +LI+  FPNY +++   + DK+L +N       + RV I S        S   Q 
Sbjct: 234 TTIITKLIELRFPNYVDILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMESKYSSTYQF 293

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                   KL ++  N D+ +  E +N+ +    + I  N KYLLE I NI  ++    E
Sbjct: 294 KHGDNGESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIPKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     +NS+V +  KD +         +  Y+LMP+ +
Sbjct: 349 LVLEFMYANSAVKVYEKDNE---------DYIYILMPLAL 379


>gi|309804032|ref|ZP_07698113.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           11V1-d]
 gi|308163800|gb|EFO66066.1| DNA polymerase III, beta subunit [Lactobacillus iners LactinV
           11V1-d]
          Length = 274

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 65/286 (22%), Positives = 135/286 (47%), Gaps = 19/286 (6%)

Query: 103 HGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFF 162
             +S+F +       +P   E     SF ++    K ++  T FA+A +E R  LNG+ F
Sbjct: 2   SENSDFTINGLDADNYPKLPEITRESSFVISGKSFKEVISETVFAVANQENRPILNGVNF 61

Query: 163 HINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222
             N ++  + A+ATD HRL+   + +    A   ++++P  ++ E+ +I++  D  V V 
Sbjct: 62  DFNPKE--INAIATDSHRLSRRTLKLATGPAVATNLVIPGNSLIELSKIIADDDPQVTVI 119

Query: 223 LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV- 281
             E+++   I +++   RL++G +P+ + +IP      + ++   L ++++RVS+++   
Sbjct: 120 PGENQVLFKIANINFYTRLLEGSYPDTERLIPQEATTTVELDALTLARSLERVSLLAHES 179

Query: 282 RIQAVK--LSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISS 338
           R   VK  L++    + ++ D+ ++G   E +     N   ++I FN  YL + +     
Sbjct: 180 RNNVVKMYLNVEDQIIKLSGDSAEVGNVAEELAFDSLNGENLEISFNPDYLRDALRV--- 236

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + D +V +         +  KD D K           ++ P+R
Sbjct: 237 --SITDSIVIKFTKPLRPFVVVPKDSDEK--------FIQLITPVR 272


>gi|294783008|ref|ZP_06748332.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294479886|gb|EFG27663.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 381

 Score =  198 bits (504), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 173/400 (43%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + I+     P+   V  +  D  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLTAVRIVEKSIKDNKIKPILSCVYAKVKDNKVYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +  S  ++ + +++++D   +      E G  + I   DS      F   ++P
Sbjct: 61  EVIREGEVAFSPSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFTTEDYP 117

Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
               +    E  + FE+ S  L  + E+  F+  T +    +N I   I   +  L  V+
Sbjct: 118 NTFENINLNENNFKFEMPSQELVEIFEKVLFSADTPDNI-AMNCIR--IESNNKTLNFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLNIES 234
           T+ +RL   + D+  +I    ++ +P   +  I++I+   D+  +K+   ++ ++   + 
Sbjct: 175 TNTYRLTYLKKDVEKEI-NNFAVSIPADTISSIVKIVKGLDNELIKIYKEDAHLYFKYKE 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
            ++  +LI+  FPNY +++   + DK+L +N       + RV I S   +++   S    
Sbjct: 234 TTIITKLIELRFPNYADILSNITYDKKLSINNEKFTNLLKRVLIFSRSNMESKYSSTYQF 293

Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                   KL ++  N D+ +  E +N+ +    + I  N KYLLE I NI  ++    E
Sbjct: 294 KHGINEESKLIISALN-DIARINEELNISFEGEDLKISLNSKYLLEFIQNIPKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     +NS+V +  KD +         +  Y+LMP+ +
Sbjct: 349 LVLEFMYANSAVKVYEKDNE---------DYIYILMPLAL 379


>gi|257461145|ref|ZP_05626243.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268]
 gi|257441519|gb|EEV16664.1| DNA polymerase III, beta subunit [Campylobacter gracilis RM3268]
          Length = 359

 Score =  198 bits (503), Expect = 1e-48,   Method: Composition-based stats.
 Identities = 84/386 (21%), Positives = 177/386 (45%), Gaps = 33/386 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MK+ + +  + E++ +    +++K+   ++ H+L+ A DG+  IKA+  EI ++  +   
Sbjct: 1   MKVLITKKLLEEIVSNTSSYLDKKDLSSITSHLLMSAKDGIFSIKATDHEIGLSYNLQNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S++  G  T +   L  +++ L D +             + +    S + L  F   +FP
Sbjct: 61  SIETEGEATANGGKLLSVIKGLSDDSVTLETV----NGALFVKQKKSKYKLPMFETRDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S    E   SF++ + +L   +++ + ++ T   +Y LNG    + E  L L  V TD  
Sbjct: 117 SFPVVEGKNSFDVNAGILGRSLKKIYPSIDTNNPKYELNGALIDVKEGFLNL--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPS-IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           RL+V ++   ++  ++ + I++P+KA+GEI ++ S K   +K+   E+ +    E+    
Sbjct: 175 RLSVYKLITQSKAGELDTKILIPKKAIGEIQKLFSDK---IKIYYDENVLLAVSENFEFF 231

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI+G+FPNY+ VIP     ++ +    +   V  ++ M       +K+++  D +   
Sbjct: 232 TKLINGKFPNYERVIPSDTAHKISIPRDKMVSGVRAINAMCEE----MKVTIKKDGMIFE 287

Query: 299 VDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
             N D  +A   +         +      ++LL+ + NI S+    D      +SS+++ 
Sbjct: 288 SINEDNSEAKTEIEATIEINGEIVFGVKNRFLLDFLSNIESEIFELD-----FNSSDTAF 342

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +      +            V+MP+
Sbjct: 343 VLSADGLKT------------VIMPI 356


>gi|44004430|ref|NP_982098.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
 gi|229021575|ref|ZP_04178173.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
 gi|229027504|ref|ZP_04183734.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|229164606|ref|ZP_04292497.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
 gi|42741496|gb|AAS44941.1| DNA polymerase III, beta subunit [Bacillus cereus ATCC 10987]
 gi|228618841|gb|EEK75776.1| DNA polymerase III, beta subunit [Bacillus cereus R309803]
 gi|228733808|gb|EEL84572.1| DNA polymerase III, beta subunit [Bacillus cereus AH1272]
 gi|228739746|gb|EEL90145.1| DNA polymerase III, beta subunit [Bacillus cereus AH1273]
          Length = 370

 Score =  197 bits (501), Expect = 2e-48,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 1   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 236 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|229035394|ref|ZP_04189299.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
 gi|228727940|gb|EEL79011.1| DNA polymerase III, beta subunit [Bacillus cereus AH1271]
          Length = 375

 Score =  197 bits (501), Expect = 3e-48,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 6   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 65

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 66  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 122

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 123 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 180

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 181 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 240

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 241 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 297

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 298 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 352 RPIVVVGAEDTTHSN-------LQLILPVRV 375


>gi|257126033|ref|YP_003164147.1| DNA polymerase III subunit beta [Leptotrichia buccalis C-1013-b]
 gi|257049972|gb|ACV39156.1| DNA polymerase III, beta subunit [Leptotrichia buccalis C-1013-b]
          Length = 375

 Score =  196 bits (499), Expect = 4e-48,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 161/391 (41%), Gaps = 28/391 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            I V R  +L+ +      +       V   + ++  D    ++ +  E+ I   I A V
Sbjct: 3   HIIVNRKSLLKAITIVENAVSENKIREVLSGIYIETKDEKAILRGTDLELTINTEIEAQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G I +   L+ + ++++ D          E   ++ I    +N     +    FP+ 
Sbjct: 63  EEDGKIVIKHKLIEEFLKQISDEKITLI----EENGKLIIQSSSTNTEFSLYNAENFPTQ 118

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                   +  +   L N +E    + +T      +N I   I E+ LKL  +++D +RL
Sbjct: 119 SPLNTGVEYIFSKQKLLNNIENVKISASTNPENLAVNCIRVEIEEDKLKL--ISSDTYRL 176

Query: 182 AVAEVDIVAQI--AKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
              E D+       +  S+ VP K +  +++I+    + ++ +    S++     ++ + 
Sbjct: 177 TYIEEDLEESQKGKENLSLSVPLKTIDGLVKIMKLIDEENITLKSDGSKVFFQFSNVEIL 236

Query: 239 VRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDK 294
            R ID +FP+Y++++  S ++K++ +N  +    + R SI    +         + +++K
Sbjct: 237 TRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLKRTSIFVRENKESKNGGIFNFANNK 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T  + +  +  E +        + I  N K+LL+ I  I          V  L ++ 
Sbjct: 297 LLLTGTS-ENAQIKEEIVTIQEGEDLKISLNVKFLLDYISTIEGKVT-----VLELLNNK 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SSV +R +D D          + Y  MP+ +
Sbjct: 351 SSVIVRDEDND---------KSLYFTMPLAL 372


>gi|330898607|gb|EGH30026.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 195

 Score =  196 bits (499), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 66/209 (31%), Positives = 120/209 (57%), Gaps = 14/209 (6%)

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       +
Sbjct: 1   DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFT 60

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            + +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L 
Sbjct: 61  FTSKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLK 120

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS
Sbjct: 121 IQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSS 175

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++  D D         ++ YV+MPMR+
Sbjct: 176 ALVQESDND---------DSAYVVMPMRL 195


>gi|146344353|ref|YP_001202209.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25]
 gi|146188165|emb|CAM96496.1| putative DNA polymerase subunit [Pseudomonas fluorescens SBW25]
          Length = 369

 Score =  196 bits (498), Expect = 5e-48,   Method: Composition-based stats.
 Identities = 97/393 (24%), Positives = 178/393 (45%), Gaps = 32/393 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++ SD+   L    R+ +RK T  V  H L+  +   L + A   + +++  IPA 
Sbjct: 1   MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIHVDASGLVLSAHNGQKQMSLTIPAD 59

Query: 61  V---DVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +      G ++ V A     +V  L   A +S         ++ IS   S F L + P  
Sbjct: 60  LFTLQGDGFAVCVPAVKFDQVVSALAKDAMVSIQFAEP---KLVISAARSRFTLATIPAD 116

Query: 117 EFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            FP  +   ++      +A S L   V +  F  A  ++R  LNGI F   +  + L   
Sbjct: 117 HFPVMEFTADQSKGELNIAGSTLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLMTL--A 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A DG RL V EV +  +   M + I+P   + ++ + + +   SV+VS S S      E 
Sbjct: 175 AADGLRLGVTEVPVTGEP--MQNFILPSSCIEDVCQFVGT--GSVRVSTSGSMARFTREG 230

Query: 235 LSMSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             +  +L++G+FP+Y+ ++         R+       A+ RV ++S   +  V+L++S++
Sbjct: 231 GVLHTKLVEGKFPDYRKLLAAAEQGDVARIVRDEFAGAMARVGLLSEGAVSLVRLAVSAE 290

Query: 294 KLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +          A + +   YN  P++I FN +   EI+ ++ + E+   +V+F    
Sbjct: 291 SISIQSVGGKAEDLADDVLACDYNAEPLEIGFNGQLAGEIVRSLGAAEI---DVIF--SG 345

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + S   +R +D  S +         +VLMP+R+
Sbjct: 346 AASGTLLRARDLPSHS---------FVLMPVRL 369


>gi|262038006|ref|ZP_06011418.1| DNA polymerase III, beta subunit [Leptotrichia goodfellowii F0264]
 gi|261747959|gb|EEY35386.1| DNA polymerase III, beta subunit [Leptotrichia goodfellowii F0264]
          Length = 375

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 70/391 (17%), Positives = 162/391 (41%), Gaps = 28/391 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            + V+R ++L+ +      +       V   + ++A +  + +K +  E+ I   I   +
Sbjct: 3   NVKVDRKELLKAIQIVENAVTENKIREVLSGIYIEAKENKIILKGTDLELSINTEISGEI 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G I +   L+ + ++++ D       +  E   ++ I    +N     +    FP+ 
Sbjct: 63  ISEGKIVIKHKLIEEFLKQILD----EKIELIEEQGKLVIKTDSTNTEFSLYDAENFPTQ 118

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            + E    +    + L + +E    + + +     +N I F I E  LKL  V++D +RL
Sbjct: 119 SKMELGLEYTFNKNKLLSYIENVKISASADPENLAVNCIRFEIEENKLKL--VSSDTYRL 176

Query: 182 AVAEVDIVAQIAKMP--SIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
              E ++          S+ +P K +  +++I+    + ++      +++     ++ + 
Sbjct: 177 TYIEEELEENEKNKEGLSVSIPLKTIEGLIKIMRLIDEENIIFKSDGTKVFFKFSNVEIL 236

Query: 239 VRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDK 294
            R+I+ +FP+Y++++    +DK++ +N  +    + R  I              S  ++K
Sbjct: 237 TRVIELQFPDYKSILKNAQHDKKVLLNTKDFLSVLKRTLIFVRDNKDAKNGGIFSFENNK 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T  N +  K  E +        + I  N K+LL+ I  +            +L +S 
Sbjct: 297 LVLTGIN-ENAKIKEELATIQEGEDLKISLNVKFLLDYISILDGKVTE-----LKLMNSK 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SSV ++ ++ D+         + Y  MP+ +
Sbjct: 351 SSVLVKDEESDA---------SLYFTMPLAL 372


>gi|319654119|ref|ZP_08008209.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
 gi|317394204|gb|EFV74952.1| DNA polymerase III [Bacillus sp. 2_A_57_CT2]
          Length = 369

 Score =  196 bits (498), Expect = 6e-48,   Method: Composition-based stats.
 Identities = 73/383 (19%), Positives = 160/383 (41%), Gaps = 25/383 (6%)

Query: 6   ERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP--ASVDV 63
           E   +++LLG A      K    +   +++ A    + I+A+   I +          + 
Sbjct: 8   ETKALIDLLGKASAAASNKP-DSIRSGIMIVAKKNEITIRAANETISVQLNAKDITEANE 66

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
                V A L  D+++KL  G  +   ++      V I  G S++ + +    EFP    
Sbjct: 67  DLIFVVPAKLFLDMMKKLPKGEVVIIVEDKN----VIILVGKSSYGISTLAIDEFPKPVA 122

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            E    F++        +     A +  E R  L G+  HI      L  +ATD HRL  
Sbjct: 123 YEEGKIFQVEGPEFAQSLSAMIHACSDSETRPILTGV--HIVSNGKYLTLIATDSHRLMA 180

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             V I+ +  +  +++VP+ ++ E+  +L+  +  V+ S+S++++ L  + +  + RL++
Sbjct: 181 TAVPILKETEEFKNVVVPKTSIKELTTLLTD-EKEVEFSISDNQLSLKTDGVLFTTRLLE 239

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL-CMTVD-N 301
           G FP+   +IP + + E+ V+     +A+DR         +     +    L    ++  
Sbjct: 240 GSFPDVTKLIPTTYESEVVVHREEFLKALDRTKTALGKSGKVALFHVMEGTLPTFNIECK 299

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            ++    E + +      + I  +  +L + + +I+S +     V  ++  +   + IR 
Sbjct: 300 TEITNVFEELFIDEAGASISIKLDVYFLTDCLQSINSQK-----VRLQIAGTMKPMLIRP 354

Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384
           + + +            +++P+R
Sbjct: 355 EIQGATQFG--------LVLPVR 369


>gi|228970059|ref|ZP_04130767.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
 gi|228789679|gb|EEM37553.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           sotto str. T04001]
          Length = 370

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 176 TDAHRLARLHFDCTKVTIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 236 IIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|330959579|gb|EGH59839.1| putative DNA polymerase subunit [Pseudomonas syringae pv.
           maculicola str. ES4326]
          Length = 369

 Score =  195 bits (497), Expect = 7e-48,   Method: Composition-based stats.
 Identities = 94/393 (23%), Positives = 173/393 (44%), Gaps = 32/393 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++ SD+   L    R+ +RK T  V  H L++ +   L + A   + +++ +IPA 
Sbjct: 1   MKFSIKCSDLAHYLKTVARVPQRKAT-DVYGHFLIKVDATGLVLSAHNGQKQMSLSIPAD 59

Query: 61  V---DVCG-SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           +      G ++ V A     ++  L   A +S         ++ IS   S F L + P  
Sbjct: 60  LFTLQGDGFAVCVPAVKFDQVISALAKEAMVSIQFAEP---KLVISAARSRFTLATIPAD 116

Query: 117 EFPSTK--EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            FP  +   ++      +A   L   V +  F  A  ++R  LNGI F   +  L L   
Sbjct: 117 HFPVMEFTADQSKGELNIAGITLSTAVHQVGFCAARNDVRVMLNGILFDFQQGLLTL--A 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG RL V +V +  +   M   I+P   + ++ + + +   +V+V+ S S      E 
Sbjct: 175 ATDGLRLGVIDVPVSGEP--MQDFILPSSCIEDVCQFVGT--GNVQVATSGSMARFTREG 230

Query: 235 LSMSVRLIDGEFPNYQN-VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
             +  +L++G+FP+Y+  VI        R+   +   A+ RV +MS   +  V+L++S+D
Sbjct: 231 GVLHTKLVEGKFPDYRKLVIAAERGDVARIVRDDFAGAMARVGLMSEGAVSLVRLAVSAD 290

Query: 294 KLCMTVDNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + +          A + +   Y+   ++I FN     EI+ ++ + E+           
Sbjct: 291 SISIHSVGGHAEDVADDVLACDYHAESLEIGFNGSLAGEIVRSLGATEID-----LIFSG 345

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S   +R +D  S +         +VLMP+R+
Sbjct: 346 PASGTLLRARDLPSHS---------FVLMPVRL 369


>gi|260889707|ref|ZP_05900970.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254]
 gi|260860313|gb|EEX74813.1| DNA polymerase III, beta subunit [Leptotrichia hofstadii F0254]
          Length = 375

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 162/391 (41%), Gaps = 28/391 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            I V+R  +L+ +      +       V   + ++ N+G   ++ +  E+ I   I A V
Sbjct: 3   HIIVDRKSLLKAITIVENAVTENKIREVLSGIYIETNEGKAILRGTDLELSINTEIEAQV 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G I +   L+ + ++++ D          E   ++ I    +N     +    FP  
Sbjct: 63  EDEGKIVIKHKLIEEFLKQISDEKITLI----EENGKLVIQASSTNTEFSLYDAGNFPVQ 118

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            + E    +      L N +E    + +       +N I   I E+ LKL  V++D +RL
Sbjct: 119 SKLENGVEYVFEKEKLLNNIENVKISASPNPENLAVNCIRLEIEEDKLKL--VSSDTYRL 176

Query: 182 AVAEVDIVA--QIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMS 238
              E D+    Q  +  S+ +P K +  +++I+    + ++ V    S++     ++ + 
Sbjct: 177 TYIEEDLDETQQGKENLSLSIPLKTIDGLIKIMKLIDEENITVKSDGSKVFFQFSNVEIL 236

Query: 239 VRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVR---IQAVKLSLSSDK 294
            R ID +FP+Y++++  S ++K++ +N  +    + R +I              + +++K
Sbjct: 237 TRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLRRTAIFVRDNKEAKNGGIFNFANNK 296

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +T  + +  +  E +        + I  N ++LL+ I  I          V  L ++ 
Sbjct: 297 LLLTGTS-ENAQIKEEIVTIQEGADLKISLNVRFLLDYISTIEGKVT-----VLELLNNK 350

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            SV +R +D D          + Y  MP+ +
Sbjct: 351 GSVIVRDEDND---------KSLYFTMPLAL 372


>gi|221642091|ref|YP_002533178.1| DNA polymerase III, beta subunit [Bacillus cereus Q1]
 gi|229113013|ref|ZP_04242513.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
 gi|221243026|gb|ACM15735.1| DNA polymerase III, beta subunit [Bacillus cereus Q1]
 gi|228670406|gb|EEL25749.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
          Length = 370

 Score =  195 bits (497), Expect = 8e-48,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 236 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|190014973|ref|YP_001966586.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|190015240|ref|YP_001966912.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|218848497|ref|YP_002454937.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
 gi|116584649|gb|ABK00764.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|116584921|gb|ABK01030.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|218540548|gb|ACK92944.1| DNA polymerase III, beta subunit [Bacillus cereus AH820]
          Length = 370

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 236 IIYQSRLLAGTYPDTARMVPDEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|242310228|ref|ZP_04809383.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489]
 gi|239523525|gb|EEQ63391.1| DNA polymerase III [Helicobacter pullorum MIT 98-5489]
          Length = 355

 Score =  195 bits (496), Expect = 9e-48,   Method: Composition-based stats.
 Identities = 80/385 (20%), Positives = 171/385 (44%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M IT++ S +  +       +++K++  ++ H+ L+  D  L  KA+  E+ +       
Sbjct: 1   MNITLQNSVLDNIFTALQPFLDKKDSSQITSHIYLETRDNQLICKATDFEMGLCSMTDSL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G  TV+   + DI+++L++G    +         ++I    S+F L  F   EFP
Sbjct: 61  TINEQGIATVNGKQILDIIKRLKEGEVNLYTNNEN----LHIKQNKSSFKLPMFNAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E E +   E+ S  L + +++    +     +  LNG    I E       VATD  
Sbjct: 117 TFPEYETLPKLEINSLELISSMKKIFPVIDINNQKRELNGALLDIKE--YSYNFVATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA   V          ++I P+KA+ EI R+      ++++  +E  I +  ++     
Sbjct: 175 RLA--MVKFDNASGNNLALIFPKKAITEIQRLFFD---NIELFYNERNIIIKSQNYIFFS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G+FP+Y+ ++P     EL +  +++ + +  ++ +++     VKL+   +++    
Sbjct: 230 HLINGKFPDYEKILPKEIQTELVLQKSSIIEGIKVINSVTND----VKLTFRPNEILFES 285

Query: 300 DNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +       ++I  N +++L+ +  I S E +       L+  N+   
Sbjct: 286 LSQDNSEAQTQIEINLPITEEIEIGINSRHVLDFLSQIDSVEFIWG-----LNGKNAPFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++              N   V+MP+
Sbjct: 341 LK------------NGNFSTVVMPI 353


>gi|190015717|ref|YP_001967211.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|208702194|ref|YP_002267438.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217956718|ref|YP_002335812.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|229142295|ref|ZP_04270815.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
 gi|116584624|gb|ABK00741.1| DNA polymerase III, beta subunit [Bacillus cereus]
 gi|208658049|gb|ACI30419.1| DNA polymerase III, beta subunit [Bacillus cereus H3081.97]
 gi|217068406|gb|ACJ82654.1| DNA polymerase III, beta subunit [Bacillus cereus AH187]
 gi|228641146|gb|EEK97457.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST26]
          Length = 370

 Score =  195 bits (496), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 75/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 1   MQFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFLSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 236 IIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 293 IHLKPQNSQVGTASVEIPCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|257452078|ref|ZP_05617377.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R]
 gi|257466123|ref|ZP_05630434.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315917280|ref|ZP_07913520.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC
           25563]
 gi|317058627|ref|ZP_07923112.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R]
 gi|313684303|gb|EFS21138.1| DNA polymerase subunit III [Fusobacterium sp. 3_1_5R]
 gi|313691155|gb|EFS27990.1| DNA polymerase subunit III [Fusobacterium gonidiaformans ATCC
           25563]
          Length = 373

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 82/394 (20%), Positives = 164/394 (41%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ V R++ L+ L    + I      P+   V ++    +L +  +  E  IT  +   
Sbjct: 1   MQVIVNRTEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +     L+ + +++L++            G  + +  GD+     +F   ++P
Sbjct: 61  QVIEEGKVAFQYPLIDEYMKELKEEEVQIRMA----GDSLMVEGGDAVSEFSTFSSEDYP 116

Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
               +  ++E      + S  L ++ ++  F+    +    ++ +   I   D ++  V 
Sbjct: 117 KAFENFMQQEKEVLLRMNSIELASIFDKLKFSAGNTD-NPAIHCVR--IEGRDGEIHFVT 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RL     + +  + +   + +P +AV    +I    ++ VK+   +   H  IE +
Sbjct: 174 TDTYRLTYLHKEFL--LPEDFQMSLPLEAVEACSKIFRGLEADVKLYFDKKFAHFEIEDI 231

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLS 291
            +   LI+  FP YQ ++   + DK + ++  NL   + RV I    +          LS
Sbjct: 232 HIMSSLIELNFPAYQAILSNGNYDKTMGISTENLLSILRRVIIFVRNNEESKYGATFHLS 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   N D+ K  E M V Y   P+ +  N KYL + + N+  D     E+   + 
Sbjct: 292 DGLLKIK-GNSDIAKINEEMIVDYQGAPLKVSLNTKYLFDFVQNLEKDT----ELSVEML 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS +SV +  K K+         +  Y+LMP+ +
Sbjct: 347 SSKTSVKVHEKGKE---------DYIYILMPLAL 371


>gi|228912517|ref|ZP_04076182.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
 gi|228847087|gb|EEM92076.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
          Length = 370

 Score =  195 bits (495), Expect = 1e-47,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 157/392 (40%), Gaps = 29/392 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M   + R+  +E L  A   ++ K+ +P    VLL+ N   + +  S     + +     
Sbjct: 1   MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +          NEL     + +    F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHTNNELKI---VENTKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       +       +  RT  A+A  + R  L G+     E +  L   A
Sbjct: 118 EEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGLNLKSMEGE--LSCTA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD +RLA    +       K   +I+P K++   L++ + +       +S++++ +  ES
Sbjct: 176 TDSYRLARLRFERTHIPATKDGEVILPSKSLKTALKLFNRESKLEMKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   +IP  +D  + V  + L+  ++++S  SS     V  +    K
Sbjct: 236 IIYQSRLLAGVYPDTSRMIPVYSDIYVTVERSELQNTLEQLSAFSS----LVMFTSEGKK 291

Query: 295 -LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   N  +G A   +     E       N +YLL+ +  I S     + +  ++ ++
Sbjct: 292 SLRIEPKNSQVGTASVEIPCD-QEETFTFACNVEYLLQALQTIPS-----EAITIKIINN 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + I G D  + +N+        +++P+R+
Sbjct: 346 QRPIVIVGADDKTNSNQQ-------LILPVRV 370


>gi|196048286|ref|ZP_03115463.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
 gi|196021023|gb|EDX59753.1| DNA polymerase III, beta subunit [Bacillus cereus 03BB108]
          Length = 370

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 76/391 (19%), Positives = 163/391 (41%), Gaps = 27/391 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 1   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVLLDCNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESKKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       L+     ++   T  A+   + R  L G+     ++  K  ++A
Sbjct: 118 EEYPEIKIEAGEDWISLSQEQFVSMANGTLHAIPAMDTRKILTGVNLKSVDD--KFFSIA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD HRLA    D     IAK   +++P K++   L++ + + +     +S++++ +  ES
Sbjct: 176 TDAHRLARLHFDCTKITIAKDGEVVLPIKSLKTALKLFNRETNLQLKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   ++P     E++++    +  ++++S  SS+    V  S   + 
Sbjct: 236 IIYQSRLLAGTYPDTARMVPGEFKSEIQLSREEFKNTLEQLSAFSSL---IVLTSEGKES 292

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           + +   N  +G A   +          +  N +YLL+ +  I+S     + +  ++ S+ 
Sbjct: 293 IHLKPQNSQVGTASVEILCNQV-EAFTLACNVEYLLQALQTITS-----ETIAIKMISNQ 346

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + G +  + +N         +++P+R+
Sbjct: 347 RPIVVVGAEDTTHSN-------LQLILPVRV 370


>gi|237753473|ref|ZP_04583953.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC
           BAA-430]
 gi|229375740|gb|EEO25831.1| DNA polymerase III subunit beta [Helicobacter winghamensis ATCC
           BAA-430]
          Length = 355

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 170/385 (44%), Gaps = 34/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M IT+  S +  +       +++K++  ++ H+ L+  +  L  KA+  E+ +       
Sbjct: 1   MNITISNSVLDNIFTSLQPFLDKKDSSQITSHIYLETRNNQLIAKATDFEMGLCAITDSV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G  TV+   + DI+++L++G    +         ++I    S+F L  F   EFP
Sbjct: 61  NILEEGIATVNGKQILDIIKRLKEGDINLYTNNEN----LHIKQNKSSFKLPMFNAQEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +  E E +   E+ S  L   +++    +     +  LNG    I E       VATD  
Sbjct: 117 TFPEFENLPKLEINSLELITSMKKIFPVIDMNNQKRELNGALLDIKE--YSYNFVATDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA+  +       K  S+I PR+A+ EI R+      ++++  +E  + +  ++     
Sbjct: 175 RLAI--IKFDKPSGKNLSLIFPRRAITEIQRLFFD---NIELFYNEKNVIIKSQNYIFFS 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
            LI+G+FP+Y+ ++P     EL +  TN+ + +  ++ +++     VK++  + ++    
Sbjct: 230 HLINGKFPDYEKILPKEMQTELNIPKTNIIEGIKVINSVTND----VKITFKAQEILFES 285

Query: 300 DNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   + +       ++I  N +++L+ +  I +         + L+  N+   
Sbjct: 286 LSQDNSEAKTQIEIELPINEEIEIGINSRHILDFLTQIDTATF-----TWALNGKNAPFV 340

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           ++ +            N   V+MP+
Sbjct: 341 LKSE------------NFSTVVMPI 353


>gi|228918927|ref|ZP_04082312.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
 gi|228840729|gb|EEM85986.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           pulsiensis BGSC 4CC1]
          Length = 370

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/392 (20%), Positives = 157/392 (40%), Gaps = 29/392 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           MK T+ R+  +E L  A   ++ KN +P    V L  N   + +  S     + +     
Sbjct: 1   MKFTINRTLFIEKLEKASATVDVKNPMPALQGVFLDCNQQGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +        K NEL     +      F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHKNNELKI---VESMKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       +       +  RT  A+A  + R  L G   ++     +L   A
Sbjct: 118 EEYPEIKIESGKDWLTMTQEQFAEIASRTLHAIAIADTRKVLTG--LNLKSMKGELSCTA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD +RLA    +      AK   +I+P K++   L++ + +       +S++++ +  ES
Sbjct: 176 TDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFNREPKLEMKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   +IP  +D  + V  + L+  ++++S  S+     V  +    K
Sbjct: 236 IIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFST----LVMFTSEGQK 291

Query: 295 -LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   N  +G A   +     E       N +YLL+ +  I S     + +  ++ S+
Sbjct: 292 SLRIEPKNSQVGTASVEIPCD-QEETFTFACNVEYLLQALQTIQS-----EAITIKIISN 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + I G +  + +N         +++P+R+
Sbjct: 346 QRPIVIVGANDKTNSN-------LQLILPVRV 370


>gi|330902070|gb|EGH33365.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. japonica
           str. M301072PT]
          Length = 181

 Score =  194 bits (494), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVA 184
           RLA+ 
Sbjct: 176 RLAMC 180


>gi|257463051|ref|ZP_05627453.1| DNA polymerase III, beta chain [Fusobacterium sp. D12]
 gi|317060655|ref|ZP_07925140.1| DNA polymerase subunit III [Fusobacterium sp. D12]
 gi|313686331|gb|EFS23166.1| DNA polymerase subunit III [Fusobacterium sp. D12]
          Length = 373

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 81/394 (20%), Positives = 162/394 (41%), Gaps = 32/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ V R++ L+ L    + I      P+   V ++    +L +  +  E  IT  +   
Sbjct: 1   MQVIVNRNEFLKKLRIVEKAISENKIKPILSCVYMETRGEMLFLCGTNLETTITTTVSCK 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +     L+ + +++L++            G  + +  GD+     +FP  ++P
Sbjct: 61  EVVKEGKVAFQYPLIDEYMKELKEEEIQIRMD----GEALMVEGGDAVSEFSTFPYEDYP 116

Query: 120 ----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
               + +++E      + S  L  + ++  F+  + +    ++ +       D ++  V 
Sbjct: 117 KAFENFEKQEEEVLLRMNSIELATIFDKLKFSAGSTD-NPAIHCVRVE--GRDGEIHFVT 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RL         Q  +   + +P + V    +I    ++ VKV   +   H  IE +
Sbjct: 174 TDTYRLTYLHKSFSLQ--EDFQMSLPLETVEACSKIFRGLEAEVKVYFDKKFAHFLIEDI 231

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLS 291
            +   LI+  FP YQ ++   + DK + ++  +L   + RV I    +          L+
Sbjct: 232 HIVSSLIELTFPAYQTILSNGNYDKIMGISTESLISILRRVIIFVRNNEESKYGATFHLA 291

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
              L +   N D+ K  E M V Y   P+ +  N KYL + + N+  D     E+   + 
Sbjct: 292 DGVLKIK-GNSDIAKINEEMAVDYQGAPLKVSLNTKYLFDFVQNLEKDT----ELSLEML 346

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS +SV +  K K+         +  Y+LMP+ +
Sbjct: 347 SSKTSVKVHEKGKE---------DYIYILMPLAL 371


>gi|3953450|gb|AAC83392.1| DnaN [Mycobacterium avium]
          Length = 258

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 57/253 (22%), Positives = 102/253 (40%), Gaps = 16/253 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A +
Sbjct: 14  KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 73

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L +     +      G +V ++ G + F L +    ++P+ 
Sbjct: 74  ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNQVALNCGSARFSLPTMAVEDYPTL 129

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  L + +    + +   A   ++    L GI   I+ + + L   ATD  RL
Sbjct: 130 PTLPEE-TGTLPADLFAEAIGQVAIAAGRDDTLPMLTGIRVEISGDTVVL--AATDRFRL 186

Query: 182 AVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLSESRI-------HLNIE 233
           AV E+   A    +  +++VP K + E  R      S V+     +++        ++  
Sbjct: 187 AVRELTWSAASPDIEAAVLVPAKTLAEAARTGIDG-SDVRCRWGRAQVCGKDGLLGISGN 245

Query: 234 SLSMSVRLIDGEF 246
               + RL+D EF
Sbjct: 246 GKRSTTRLLDAEF 258


>gi|330937299|gb|EGH41307.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 183

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 65/185 (35%), Positives = 103/185 (55%), Gaps = 6/185 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    ++   +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDD---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDGH
Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDGH 175

Query: 180 RLAVA 184
           RLA+ 
Sbjct: 176 RLAMC 180


>gi|326943605|gb|AEA19498.1| DNA polymerase III, beta subunit [Bacillus thuringiensis serovar
           chinensis CT-43]
          Length = 370

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 77/392 (19%), Positives = 157/392 (40%), Gaps = 29/392 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M   + R+  +E L  A   ++ K+ +P    VLL+ N   + +  S     + +     
Sbjct: 1   MNFKINRTLFIEKLEKASATVDIKSPMPALQGVLLECNSKGMILMGSDGTETVTLVTRFN 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +       G +  +A  +   ++K +          NEL     + +    F   +   
Sbjct: 61  VNSGDCTEPGKVLFAAAPVLKTIKKFKSEFIGLEHTNNELKI---VENTKKQFSFCTMDH 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            E+P  K E       +       +  RT  A+A  + R  L G+     E +  L   A
Sbjct: 118 EEYPEIKIESGEDWITMTQEQFAKIASRTLHAIAVSDTRKILTGLNLKSMEGE--LSCTA 175

Query: 176 TDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           TD +RLA    +      AK   +I+P K++   L++ + +       +S++++ +  ES
Sbjct: 176 TDSYRLARLRFERTHIPAAKDGEVILPSKSLKTALKLFNRESKLEMKLISDTQLLIRGES 235

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +    RL+ G +P+   +IP  +D  + V  + L+  ++++S  S+     V  +    K
Sbjct: 236 IIYQSRLLAGIYPDTSRMIPDYSDIYVTVERSELQNTLEQLSAFST----LVMFTSEGTK 291

Query: 295 -LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            L +   N  +G A   +     E       N +YLL+ +  I S     + +  ++ ++
Sbjct: 292 SLRIEPKNSQVGTASVEIPCD-QEETFTFACNVEYLLQALQTIPS-----EAITIKIINN 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              + I G D  + +N         +++P+R+
Sbjct: 346 QRPIVIVGADDKTNSN-------LQLILPVRV 370


>gi|322379378|ref|ZP_08053749.1| DNA polymerase III subunit beta [Helicobacter suis HS1]
 gi|322380445|ref|ZP_08054646.1| DNA polymerase III subunit beta [Helicobacter suis HS5]
 gi|321147127|gb|EFX41826.1| DNA polymerase III subunit beta [Helicobacter suis HS5]
 gi|321148196|gb|EFX42725.1| DNA polymerase III subunit beta [Helicobacter suis HS1]
          Length = 363

 Score =  194 bits (493), Expect = 2e-47,   Method: Composition-based stats.
 Identities = 79/390 (20%), Positives = 166/390 (42%), Gaps = 36/390 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            + +E++ + E L +     +RK+   ++ H+ L+A   LL ++A+  E+ +   + AS+
Sbjct: 4   HLMIEKTRLEEALKNLIAFTDRKDLTNITSHICLEAKGDLLRLEANDLEMGLCLNLNASI 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G  T +A    DI  KL+ G      KEN     V+IS   S F L  F +++FP+ 
Sbjct: 64  LEEGGATFNAKHFLDIASKLEQGELTLQTKEN----YVHISFKRSKFKLPLFDKADFPTF 119

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              E +     + + L    ++    ++T   +Y   G+     +   +L  VATD  RL
Sbjct: 120 PSFEDLPFVHFSDTTLGEYFKKLTHVISTNASKYEFGGVLLVFKD---RLELVATDTRRL 176

Query: 182 AVAEVDIV--AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE-SRIHLNIESLSMS 238
           A+ ++D             I+P++A+ EI ++  S    +  +  + S +     S+ + 
Sbjct: 177 ALVQMDPDNMPTTKTTQEFILPKRAMLEISKLFESDFDMLYETHDQPSMLFFKNASMVLY 236

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
            +LI G++PNYQ +IP     +L ++    ++A+   + +SS      K+      +   
Sbjct: 237 SKLISGKYPNYQAIIPSEFTHQLELDTQKFKEAIQITNALSSTT----KICFYPGYIEFE 292

Query: 299 V---DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
               +NP    A  S+          +  + +++L+ ++ + +           L+ +  
Sbjct: 293 SLQDENPSF--ASTSIEAQTTLEGFTLHVHARHVLDALNALHTPTF-----TLLLNENTR 345

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              ++ +   +            ++MP+ I
Sbjct: 346 PFLVQNEGFKT------------LIMPVMI 363


>gi|237745013|ref|ZP_04575494.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
 gi|229432242|gb|EEO42454.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
          Length = 381

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 93/400 (23%), Positives = 172/400 (43%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +  D  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDNKIYFTGTNLDTTIKTSIDVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I  S  ++ + +++++D   +      E G  + I   DS          ++P
Sbjct: 61  EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  V+
Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I+   S+ VP   +  I++I+   D+ V KV   E+ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDISD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS---SVRIQAVKLSL 290
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S   S    +     
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 SSDK-----LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
             ++     + ++  N ++ +  E ++V +    + I  N KYLLE I NIS ++    E
Sbjct: 294 KHNEKNKGIMTISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|213028016|ref|ZP_03342463.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 201

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 72/207 (34%), Positives = 121/207 (58%), Gaps = 6/207 (2%)

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
           R L +GA+I+   E   G  + +  G S F L + P ++FP+  + +    F L  + +K
Sbjct: 1   RGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMK 57

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
            L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV  + + A +    S+
Sbjct: 58  RLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSV 114

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           IVPRK V E++R+L   ++ ++V +  + I  ++     + +L+DG FP+Y+ V+P + D
Sbjct: 115 IVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPD 174

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQA 285
           K L   C  L+QA  R +I+S+ + + 
Sbjct: 175 KHLEAGCDILKQAFARAAILSNEKFRG 201


>gi|119953226|ref|YP_945435.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135]
 gi|119861997|gb|AAX17765.1| DNA polymerase III, beta chain [Borrelia turicatae 91E135]
          Length = 386

 Score =  193 bits (491), Expect = 4e-47,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 167/399 (41%), Gaps = 36/399 (9%)

Query: 2   KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           K    +   I   +  A  II  +N   +   +LL+  +  L+IKA+   I     IP  
Sbjct: 4   KFILCDTEQISNEIDKAKSIILNRNINDIWSAILLEVKNSNLKIKATDRNIFFESTIPIV 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF---FKENELGTEVNISHGDSNFYLQSFPESE 117
                 + ++A    D V+ L    ++       E++L       + + NF      E  
Sbjct: 64  SAENFKVLINASNFSDAVKALNLYNELKIKFIEDESKLSIIGESENKNDNFINDHLSEPT 123

Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           F             EE Y  + EL     K ++ +  F+ + +E +  LNGI+F   +++
Sbjct: 124 FSSEEIEIYNYDINEEIYNLTVELTQREFKKIINKVSFSASHDESKNVLNGIYF-TKDKN 182

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L  V+T+ HRL+V + D++    +  + IVP K V  +LR +   +  +K+ +S+ + 
Sbjct: 183 SALTFVSTNSHRLSVYKTDLI--FEEDINFIVPVKMVN-LLRQMMVGEGIIKLKISDKKF 239

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
           ++   +  +   LI+G +P+Y+++IP     +  ++ + L+  + RVS  +  R + V L
Sbjct: 240 YVEFNNYKIVCSLINGNYPDYESIIPNEQQNKALIDVSILKDRLSRVSSYTDKRSKKVIL 299

Query: 289 SLSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           + + ++L +  ++P  G+  E    S N  Y      +  N  Y  E +    + +    
Sbjct: 300 NFAGNQLRLMAEDPITGRKGEFFVQSPNYDYEGSEEVVAINSAYFTEAMGVFDTSK---- 355

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
                +  S   +         K +        +++MPM
Sbjct: 356 ---LEIKFSGGGIL--------KLSDPANFGFIHLIMPM 383


>gi|227494190|ref|ZP_03924506.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
 gi|226831924|gb|EEH64307.1| DNA-directed DNA polymerase [Actinomyces coleocanis DSM 15436]
          Length = 269

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 58/279 (20%), Positives = 125/279 (44%), Gaps = 20/279 (7%)

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
               ++P+      V   ++ + +    + +   A AT+E    L GI   I ++ + L 
Sbjct: 1   MNVEDYPTLPAVPEVKG-KIDAQLFAQTITQVSVAAATDETIPLLTGIRMEIEDDTITL- 58

Query: 173 AVATDGHRLAVAEVDIVAQIAKMP-SIIVPRKAVGEILRILSSKDSSVKVSLS------E 225
            +ATD +RLA+           +  S++V  K + ++ + ++S   SV+++ S      +
Sbjct: 59  -LATDRYRLAMRTFKWEPAEPGISTSMLVKAKTLNDVAKSMTSA-GSVEIAFSTTETTGQ 116

Query: 226 SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
           S I     +   +  L+DGE+P  + + P +      VN   L +AV RVS+++  +  +
Sbjct: 117 SLIGFRAGTRHTTSTLMDGEYPPVRRLFPETTATTALVNRNELLEAVKRVSLVAEQKT-S 175

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           V+L  S+ ++ +     D  +A E+++       +   FN +YL   +  +++       
Sbjct: 176 VRLGFSAGQVVLEAGQDDNAQANETIHAQLQGEDIRTAFNPQYLQAGLSALNTQ-----F 230

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V F    +     + G+++      ++ +   Y+LMP+R
Sbjct: 231 VRFSFTDAAKPAVLTGQNEP---LAEDDLAFRYLLMPIR 266



 Score = 52.5 bits (125), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 20/149 (13%), Positives = 48/149 (32%), Gaps = 5/149 (3%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGA--IPAS 60
            ++     + +           TIP+   + ++  D  + + A+    + +      PA 
Sbjct: 18  KIDAQLFAQTITQVSVAAATDETIPLLTGIRMEIEDDTITLLATDRYRLAMRTFKWEPAE 77

Query: 61  VDVCGSITVSAHLLYDIVRKLQD--GAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             +  S+ V A  L D+ + +      +I+F      G  +      +     +  + E+
Sbjct: 78  PGISTSMLVKAKTLNDVAKSMTSAGSVEIAFSTTETTGQSLIGFRAGTRHTTSTLMDGEY 137

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFA 147
           P  +      +   A      L+E     
Sbjct: 138 PPVRRLFPETTATTALVNRNELLEAVKRV 166


>gi|260494790|ref|ZP_05814920.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
 gi|260197952|gb|EEW95469.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
          Length = 381

 Score =  193 bits (490), Expect = 5e-47,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 171/400 (42%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +  D  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKDNKIYFTGTNLDTTIKTSIDVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I  S  ++ + +++++D   +      E G  + I   DS          ++P
Sbjct: 61  EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  V+
Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V KV   E+ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S    ++   S    
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                +   + ++  N ++ +  E ++V +    + I  N KYLLE I NIS ++    E
Sbjct: 294 KHNEENKGTMTISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  K+ D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKNNDE---------YIYILMPLAL 379


>gi|330719908|gb|EGG98380.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047]
          Length = 198

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 69/195 (35%), Positives = 109/195 (55%), Gaps = 6/195 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M+  + R D+++ L     ++ER+ T+PV  ++L+   DG L +  +  E+E+ G +   
Sbjct: 1   MRFAISREDLIKPLTLVAGVVERRQTLPVLSNILIVVEDGQLSLTGTDLEVELVGRVTLT 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G +TV A  L DI + L D AQI+   E++   ++ +  G S F L + P ++FP
Sbjct: 61  EPAEAGEVTVPARKLMDICKTLPDDAQITLQLEDD---KMILKSGRSRFSLTTLPATDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S +E      F +  S LK L++RT  AMA +++RYYLNG+ F I   + KL AVATDGH
Sbjct: 118 SVEESPQNLDFVVQQSELKRLIDRTSIAMAQQDVRYYLNGMLFEIQ--NAKLRAVATDGH 175

Query: 180 RLAVAEVDIVAQIAK 194
           RLA++E        +
Sbjct: 176 RLAMSEAAADIATDE 190


>gi|88697474|gb|ABD48431.1| DnaN [Morganella morganii]
 gi|88697480|gb|ABD48434.1| DnaN [Morganella morganii]
 gi|88697482|gb|ABD48435.1| DnaN [Morganella morganii]
 gi|88697484|gb|ABD48436.1| DnaN [Morganella morganii]
 gi|88697486|gb|ABD48437.1| DnaN [Morganella morganii subsp. morganii]
 gi|88697508|gb|ABD48448.1| DnaN [Morganella morganii]
          Length = 193

 Score =  193 bits (490), Expect = 6e-47,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 117/199 (58%), Gaps = 7/199 (3%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+  A+P       G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           DGAQIS   +   G  + +  G S F L + P S+FP+  + +   +F L  + LK L+E
Sbjct: 61  DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIE 117

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
            T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI  ++    S+IVPR
Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPD-HSVIVPR 174

Query: 203 KAVGEILRILSSKDSSVKV 221
           K V E++R+L   D+ +K+
Sbjct: 175 KGVIELMRLLDGGDALLKL 193


>gi|251771681|gb|EES52256.1| DNA polymerase III, beta subunit [Leptospirillum ferrodiazotrophum]
          Length = 391

 Score =  192 bits (489), Expect = 7e-47,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 161/399 (40%), Gaps = 28/399 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSC-HVLLQANDGLLEIKASGPEIEITGAIPA 59
           M   +E+S  LE L     ++  +  I +   H+LL+A +  L + +          +PA
Sbjct: 1   MDFLIEQSVFLEGLEKVS-VLSDRKNIALLSSHILLEAGEDGLTLLSFDQSAGGRLRVPA 59

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G  TV    ++ IVR+L  G    F +E        +    + F+L+     +F 
Sbjct: 60  KVTTPGQATVLGKKIFQIVRELAPGMIHVFREEGGRKGMTTVEKDSAVFHLKGIDPRDFA 119

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH---INEEDLKLCAVAT 176
           S  E    YSF +    L+ L+E+T   +  EE  Y +NG+ F     +     L  V T
Sbjct: 120 SFPEITPEYSFGVPIRDLQRLIEKTLPFVVEEEGTY-MNGVLFQRERTSGGKAALNVVGT 178

Query: 177 DGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSES 226
           DG+ L   ++ +  +             ++ R+   +++R+L      +  +V++S++  
Sbjct: 179 DGNGLHHGQIPLGEEGGIDLSEQGEKRFLIKRRHAADLMRMLETDSKDEKLTVEISVNPR 238

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
                       VRL+D  FPNY++V P  +   + +        + R  ++S  +   +
Sbjct: 239 YAQFRWLGFYFFVRLLDLRFPNYRDVFPEEHSVTVDMGREAATSIIRRAGLIS-EKNVEL 297

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           +L+     + MT  N D+G + E         P    F+ + L +++  +    +    V
Sbjct: 298 ELTWDERAVTMTSQNIDIGDSREQTPAIVTGPPSGFFFSIQSLSKLLGVVGGTTLRMQAV 357

Query: 347 VFR--LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +    L+ S   V           +   +  + YV+MP+
Sbjct: 358 ILDDPLEHSKVPVV---------WSSVEEPQSRYVIMPL 387


>gi|195953462|ref|YP_002121752.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1]
 gi|195933074|gb|ACG57774.1| DNA polymerase III, beta subunit [Hydrogenobaculum sp. Y04AAS1]
          Length = 398

 Score =  192 bits (488), Expect = 8e-47,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 166/399 (41%), Gaps = 31/399 (7%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIPAS 60
           +  ++ +  +++  A    E K+ +P+  + L++  +    +KA+  E  I+I G  P  
Sbjct: 10  VVFDKKEFDDIISKAKNTTESKSILPILSNFLIEIENSKYFVKATDLENYIKIEGR-PEQ 68

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKEN--ELGTEVNISHGDSNFYLQSFPESEF 118
            +V  ++ +++  L DIV+ L           +     + V I  G S F L     SEF
Sbjct: 69  SEVSCTLCINSKKLSDIVKSLSSATFTLTLVNDPSAQSSYVQIQSGRSKFKLTLAEASEF 128

Query: 119 PSTKEEEYV-YSFELASSVLKNLVERTHFAMATEEIR-YYLNGIFFHINEEDLKLC--AV 174
           P+  E E    S  +   +L   +ERT +A+A E+     L G+    +  D K      
Sbjct: 129 PAFPEIENDMISNNIPGFMLLEGLERTDYAVAKEDAMNPTLTGVNMIFDNNDGKSFVEFA 188

Query: 175 ATDGHRLAVAEVDIVAQIAKM------PSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           ATDG+RL V +       +         S  +PRK V  IL+ +++K S V +       
Sbjct: 189 ATDGNRLTVFKKYYPKDESNENITLSNMSFTIPRKTVK-ILKSITNKASFVNIYYKSGSS 247

Query: 229 HLNIESL----SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            L  E      ++  RL++GEFP+Y+  I         ++   +LR  + R+S  +   +
Sbjct: 248 FLIFEDKAMGCTLFSRLLEGEFPDYKTYIENIDRPLNAKIQRKDLRDLIRRLSFSADGTV 307

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
             +KL+ + + L     + +  +  + +++ Y      +  N +YL E     S D    
Sbjct: 308 IPIKLTFADNILIGETSDRESTEGRDEIDIDYVGEAFSVDLNARYLKE-----SVDYAPC 362

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
           D +    D   + + +        N ++       ++MP
Sbjct: 363 DYINISTDDPMNGMLV-----SCGNLEEEGFYYASLIMP 396


>gi|118475405|ref|YP_891212.1| DNA polymerase III subunit beta [Campylobacter fetus subsp. fetus
           82-40]
 gi|118414631|gb|ABK83051.1| DNA polymerase III, beta subunit [Campylobacter fetus subsp. fetus
           82-40]
          Length = 356

 Score =  192 bits (488), Expect = 9e-47,   Method: Composition-based stats.
 Identities = 81/387 (20%), Positives = 174/387 (44%), Gaps = 33/387 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK+ ++++ +  ++ +    +++K+   ++ H+ L A DG+L IKA+  EI +   +  A
Sbjct: 1   MKVLIKKNVLESIVINTNPYLDKKDLSSITSHIFLSARDGVLNIKATDNEIGLEYKVKNA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G  T +   L DI++ L+DG  +    +N     + I   +S + L      +FP
Sbjct: 61  TIADEGMATANGKKLLDIIKSLKDGDIMLETIQNH----LYIKQNNSKYRLPMQKPEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F++ +  L   +++   ++     +  L G    I ++ + L  V TD  
Sbjct: 117 EFPSLENKKKFDINAGSLSKSLKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+V +++I +Q     SII+P+KA+ EI ++      ++++   E+      ++     
Sbjct: 175 RLSVYQLEINSQ-NDPFSIIIPKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFT 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G +P+Y  V+P    + + +N   + + +  +S++S      VK++++ D +    
Sbjct: 231 KLINGRYPDYTRVVPNEIKQNIILNREKIIEGIKTISMLSE----IVKITIAPDNISFES 286

Query: 300 DNPDMGKAIESMNVYYNECPMDI-CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            N D  +A   +    N     I     +++L+ + +I      D E     +  N    
Sbjct: 287 INDDNSEAKTFIEYRSNVSDQIILGVKNRFILDFLSSIE-----DSEFNLGYNEPNLPFI 341

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   D  +            V+MP+ I
Sbjct: 342 LSSGDLRT------------VVMPVNI 356


>gi|256844895|ref|ZP_05550353.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
 gi|256718454|gb|EEU32009.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
          Length = 381

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 173/400 (43%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +  +  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I  S  ++ + +++++D   +      E G  + I   DS          ++P
Sbjct: 61  EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  ++
Sbjct: 118 NTFENVVLNENNFKFEMPSQDLVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFIS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V KV   E+ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S    ++   S    
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                + +K+ ++  N ++ +  E ++V +    + I  N KYLLE I NIS ++    E
Sbjct: 294 KHNEENKNKMTVSALN-ELARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|19703871|ref|NP_603433.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296329377|ref|ZP_06871877.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|19714031|gb|AAL94732.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|296153497|gb|EFG94315.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 381

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 172/400 (43%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +     +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRIVEKSVKENKIKPILSCIYAKVKGNKIYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +     ++ + +++++D   +      E G  + I   DS      F   ++P
Sbjct: 61  EVIREGEVAFYYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVFSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  V+
Sbjct: 118 NTFENIVLNENNFKFEMPSQELVNIFEKVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I+   S+ VP   +  I++I+   D+ V K+   ++ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDISD-FSVSVPADTISSIIKIIKGLDNEVIKIYKEDAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S    ++   S    
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLHMNNDKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                + +K+ ++  N ++ +  E ++V +    + I  N KYLLE I NI  ++    E
Sbjct: 294 KHNEENKNKMAISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|237741560|ref|ZP_04572041.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|294785822|ref|ZP_06751110.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
 gi|229429208|gb|EEO39420.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|294487536|gb|EFG34898.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
          Length = 381

 Score =  191 bits (487), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 92/400 (23%), Positives = 173/400 (43%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +  +  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I  S  ++ + +++++D   +      E G  + I   DS          ++P
Sbjct: 61  EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  ++
Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFIS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V KV   E+ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S    ++   S    
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                + +K+ ++  N ++ +  E ++V +    + I  N KYLLE I NIS ++    E
Sbjct: 294 KHNEENKNKMTVSALN-ELARINEELDVNFEGEDLKISLNSKYLLEFIQNISKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|88697472|gb|ABD48430.1| DnaN [Morganella morganii]
 gi|88697488|gb|ABD48438.1| DnaN [Morganella morganii]
 gi|88697490|gb|ABD48439.1| DnaN [Morganella morganii subsp. sibonii]
          Length = 193

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 76/199 (38%), Positives = 118/199 (59%), Gaps = 7/199 (3%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+  A+P       G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAAVPLDQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           DGAQIS   +   G  + +  G S F L + P S+FP+  + +   +F L+ + LK L+E
Sbjct: 61  DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLSQATLKRLIE 117

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
            T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI  ++    S+IVPR
Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQELPD-HSVIVPR 174

Query: 203 KAVGEILRILSSKDSSVKV 221
           K V E++R+L   D+ +K+
Sbjct: 175 KGVIELMRLLDGGDALLKL 193


>gi|88697476|gb|ABD48432.1| DnaN [Morganella psychrotolerans]
 gi|88697478|gb|ABD48433.1| DnaN [Morganella psychrotolerans]
 gi|88697492|gb|ABD48440.1| DnaN [Morganella psychrotolerans]
 gi|88697494|gb|ABD48441.1| DnaN [Morganella psychrotolerans]
 gi|88697496|gb|ABD48442.1| DnaN [Morganella psychrotolerans]
 gi|88697498|gb|ABD48443.1| DnaN [Morganella psychrotolerans]
 gi|88697500|gb|ABD48444.1| DnaN [Morganella psychrotolerans]
 gi|88697502|gb|ABD48445.1| DnaN [Morganella psychrotolerans]
 gi|88697504|gb|ABD48446.1| DnaN [Morganella psychrotolerans]
 gi|88697506|gb|ABD48447.1| DnaN [Morganella psychrotolerans]
 gi|88697510|gb|ABD48449.1| DnaN [Morganella psychrotolerans]
 gi|88697512|gb|ABD48450.1| DnaN [Morganella psychrotolerans]
          Length = 193

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 74/199 (37%), Positives = 115/199 (57%), Gaps = 7/199 (3%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+   +P       G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVPLVQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           DGAQIS   +   G  + +  G S F L + P S+FP+  + +   +F L  + LK L+E
Sbjct: 61  DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIE 117

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
            T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI   +    S+IVPR
Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPD-HSVIVPR 174

Query: 203 KAVGEILRILSSKDSSVKV 221
           K V E++R+L   ++ +K+
Sbjct: 175 KGVIELMRLLDGGETLLKL 193


>gi|254304130|ref|ZP_04971488.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324322|gb|EDK89572.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 381

 Score =  191 bits (486), Expect = 1e-46,   Method: Composition-based stats.
 Identities = 89/400 (22%), Positives = 171/400 (42%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + I+     P+   +  +     +    +  +  I  +I   
Sbjct: 1   MHIRVNRQNFLSAIRIVEKSIKENKIKPILSCIYAKVKGNKIYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G +     ++ + +++++D   +      E G  + I   DS      F   ++P
Sbjct: 61  EVIREGEVAFYCSIIDEYLKEIKDEFIVLRV---ENGNILFIETEDSITEYDVFSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L  + E   F+  T +    +N I      +   L  V+
Sbjct: 118 NTFENIILNENNFKFEMPSQELVTIFENVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V K+   ++ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKIYKEDAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--- 290
            ++  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S    ++   S    
Sbjct: 234 TTIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 -----SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
                +++K+ ++  N ++ +  E ++V +    + I  N KYLLE I NI  ++    E
Sbjct: 294 KHGEENNNKMSISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|307592396|ref|YP_003899987.1| DNA polymerase III subunit beta [Cyanothece sp. PCC 7822]
 gi|306986041|gb|ADN17921.1| DNA polymerase III, beta subunit [Cyanothece sp. PCC 7822]
          Length = 497

 Score =  191 bits (486), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 85/402 (21%), Positives = 171/402 (42%), Gaps = 29/402 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQ--ANDGLLEIKASGPEIEITGAIPA 59
           +I+ +++ +LE +      I      P+   +LL+       L++++   E   +  I A
Sbjct: 104 QISTDKNALLEAIELVKAGISNNPAYPILGMILLELETEKQRLKLRSYNYEFGFSTEIEA 163

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN------FYLQSF 113
            +   GSI + A L Y I+RK   G  +   + N+  T+  ++           F ++  
Sbjct: 164 GITGKGSIALPAALFYAILRKFPMGECLLTLQTNDEATDEIVAKLSLKEQPDNFFEIRGL 223

Query: 114 PESEFPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE----D 168
           P +++P              +   L ++   + FA + EE +  L G  F ++       
Sbjct: 224 PGNQYPEYPTVSPTTVMACFSGDFLISIFNGSLFAASNEETKRVLTGTHFLLSYNPDKKL 283

Query: 169 LKLCAVATDGHRLAVA--EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
             L    TDGHR+  +       + + +  S+ +P KA+ E+ + L   D  +K+ LSE+
Sbjct: 284 TTLKTFTTDGHRMVFSEGMTKDQSTLDEPVSLTIPVKALRELQKHLLPSD-QIKLYLSEN 342

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIP---CSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
                     +  R I+G +P+ +NVI      +          L+  ++R  I+ +   
Sbjct: 343 LCRFQWGLNELVSRTIEGAYPDCENVINEILSQSSHSFTCQRGQLQDTLERFLILCTKSE 402

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVV 342
           + +K+ + S+K  +++   D+ +  ES+ +  +   P+ + +N  YLLEII  I      
Sbjct: 403 RVMKMKIESEKDYLSISQKDVARGQESIPIENFTGKPLKLLYNVNYLLEIIKAIP----- 457

Query: 343 DDEVVFRL-DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +D ++  L +S   +  I      S +     V+  Y+L P+
Sbjct: 458 NDTIILHLGNSPTDATLITPSINSSHSLA---VHLKYLLAPL 496


>gi|256026784|ref|ZP_05440618.1| DNA polymerase III, beta chain [Fusobacterium sp. D11]
 gi|289764779|ref|ZP_06524157.1| DNA polymerase subunit III [Fusobacterium sp. D11]
 gi|289716334|gb|EFD80346.1| DNA polymerase subunit III [Fusobacterium sp. D11]
          Length = 381

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 90/400 (22%), Positives = 169/400 (42%), Gaps = 36/400 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +  +  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVD 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I  S  ++ + +++++D   +      E    + I   DS          ++P
Sbjct: 61  EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENRNILFIETEDSTTEYDVHSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  V+
Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTPDNI-AMNCIRIESILK--HLHFVS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V KV   E+ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMS---SVRIQAVKLSL 290
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S   S    +     
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSESKYSSTYEF 293

Query: 291 SSDK-----LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
             ++     + ++  N ++ +  E ++V +    + I  N KYLLE I NI  ++    E
Sbjct: 294 KHNEENKGIMTISALN-EIARINEELDVNFEGEDLKISLNSKYLLEFIQNIPKEK----E 348

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V     SNS+V +  KD D            Y+LMP+ +
Sbjct: 349 LVLEFMYSNSAVKVYEKDNDE---------YIYILMPLAL 379


>gi|253582114|ref|ZP_04859338.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725]
 gi|251836463|gb|EES65000.1| DNA polymerase subunit III [Fusobacterium varium ATCC 27725]
          Length = 376

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 164/395 (41%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M + ++R D L+ L    + I      P+     ++  +  L    +  E  IT  +   
Sbjct: 1   MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETREENLFFCGTNLETTITTEMKCE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G I     L+ + +R+++D       ++N     + I   DS+         +FP
Sbjct: 61  EIVEEGKIVFQHQLVDEYLREIKDEIVTLSVRDNN----LFIESSDSSSEFSLMEAEDFP 116

Query: 120 ST----KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
                    +    F++ S+ L ++ E+  FA ++      +N +       +LK   + 
Sbjct: 117 RILVEADFFQRQEDFKINSTELADIFEKVKFAASSSSENLPINCVRLESEGNNLKF--IT 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234
           TD +RL   E ++  ++ +   + +P   +  + ++L S +++ +K      +++  +E 
Sbjct: 175 TDTYRLVFLEKELE-KVNEKLGVSIPLNTIEALAKLLRSIEETEIKFYFYNKQVYFKLED 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSL 290
             +  R+ID  FPNY+ ++     +K L +N     + + R+ I               L
Sbjct: 234 TLIISRVIDLAFPNYRGILGNDTYNKTLIINSEKFLKVLRRIIIFVRNNVESKYGATFEL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              +L +   N D+ K  E + V Y    + I  N K+L + I N++ +      ++   
Sbjct: 294 EGKELKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSDFIQNLNKE----SNIMLNF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            SSNSSV I+ ++ D         N  Y++MP+ +
Sbjct: 349 ISSNSSVKIKKENDD---------NYLYIVMPLAL 374


>gi|229133511|ref|ZP_04262338.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196]
 gi|228649911|gb|EEL05919.1| DNA polymerase III, beta subunit [Bacillus cereus BDRD-ST196]
          Length = 393

 Score =  191 bits (485), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 70/280 (25%), Positives = 136/280 (48%), Gaps = 22/280 (7%)

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L     +EFP+    +     ++ +  L  + ++T FA A  E R  L G+ F I  + 
Sbjct: 130 NLNGLSANEFPNVPFLDAHTEIQVETEQLIEVFKQTVFATAKNESRRVLTGVHFVI--DH 187

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
            KL   ATD HRLA+ E+ I +      + IVP   + E+L++++S  + V + LSES I
Sbjct: 188 NKLICAATDSHRLALREIPISSHA--KLNCIVPNSTISELLKLMNSNSNLVYIYLSESHI 245

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVK 287
                ++++  RLI+G++PN   +IP  +   + ++   + Q VDR S+++S      V 
Sbjct: 246 IFKFGTITLYSRLIEGKYPNISGLIPNESQTVINIDRKKILQGVDRSSLLASEWANNNVN 305

Query: 288 LSLSSD-KLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           L +  +  + ++ +   +GK  E+  ++  + E  ++I F+ +Y+++ +  I      +D
Sbjct: 306 LEIIDECTIQISSNASQIGKISETQQIDAIHGEKQLNISFDGRYMVDTLKAIK-----ED 360

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            V      S   + I   ++ +         A Y++ P+R
Sbjct: 361 RVTLSFGGSMRPILIEAGEQSA---------AVYLISPVR 391



 Score = 37.5 bits (86), Expect = 3.3,   Method: Composition-based stats.
 Identities = 30/242 (12%), Positives = 75/242 (30%), Gaps = 5/242 (2%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +I VE   ++E+         +  +  V   V    +   L   A+         IP S 
Sbjct: 150 EIQVETEQLIEVFKQTVFATAKNESRRVLTGVHFVIDHNKLICAATDSHRLALREIPISS 209

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               +  V    + ++++ +   + + +   +E               L           
Sbjct: 210 HAKLNCIVPNSTISELLKLMNSNSNLVYIYLSESHIIFKFGTITLYSRLIEGKYPNISGL 269

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE-DLKLCAVATDGHR 180
              E      +    +   V+R+    +        N +   I +E  +++ + A+   +
Sbjct: 270 IPNESQTVINIDRKKILQGVDRSSLLASEWAN----NNVNLEIIDECTIQISSNASQIGK 325

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           ++  +        K  +I    + + + L+ +     ++    S   I +     S +V 
Sbjct: 326 ISETQQIDAIHGEKQLNISFDGRYMVDTLKAIKEDRVTLSFGGSMRPILIEAGEQSAAVY 385

Query: 241 LI 242
           LI
Sbjct: 386 LI 387


>gi|331703022|ref|YP_004399709.1| DNA polymerase IIIsubunit beta [Mycoplasma mycoides subsp. capri LC
           str. 95010]
 gi|256384459|gb|ACU79029.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|256385292|gb|ACU79861.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp. capri
           str. GM12]
 gi|296455793|gb|ADH22028.1| DNA polymerase III, beta subunit [synthetic Mycoplasma mycoides
           JCVI-syn1.0]
 gi|328801577|emb|CBW53730.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. capri LC
           str. 95010]
          Length = 375

 Score =  190 bits (484), Expect = 2e-46,   Method: Composition-based stats.
 Identities = 72/373 (19%), Positives = 155/373 (41%), Gaps = 19/373 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  ++ R  +L+ L  A ++I+ KN  P    + L      + I A+   +     +   
Sbjct: 1   MNFSINRMVLLDNLSKAAKVIDPKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60

Query: 58  --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V   G + +    + +++R+L D   +    E+    E+ I   +S+F +     
Sbjct: 61  NSDLEVKQEGKVLLKPKFVLEMLRRLDDEFVVFSMVED---NELIIKTDNSDFSIGVLNS 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P     E    F L    +K  + +   +M     +  L G+   +   + K     
Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKL--NNNKAIFST 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  R++   ++I +   +   I +P K   E+ ++L + + ++K+ + E  I   I+++
Sbjct: 176 TDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAE-NLKIIIVEGYITFIIDNV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294
                LIDG FPN Q   P   +  + V   ++ + + R  +++   + A V + ++ DK
Sbjct: 235 IFQSNLIDGRFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294

Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +       ++GK  E  +  V      + I FN ++L++ I  +      +D +  +L +
Sbjct: 295 IEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLD-----EDRIELKLIN 349

Query: 353 SNSSVFIRGKDKD 365
           S   + I     +
Sbjct: 350 STKPIVINNVYDE 362


>gi|313112576|ref|ZP_07798237.1| DNA polymerase III beta subunit protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310625098|gb|EFQ08392.1| DNA polymerase III beta subunit protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 246

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 70/253 (27%), Positives = 122/253 (48%), Gaps = 8/253 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I  ++  +   +    + +  ++ IPV   +LL+A    L +     E+ I   I A+
Sbjct: 1   MNIVCDKVLLSAAIDGVSKAVTMRSAIPVLEGILLKAEGFQLNLTGYDLEMGIVTTIEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + ++A LL  ++ ++  G       EN    +  I  G   F +QS P ++FP 
Sbjct: 61  VKEAGEVVLNAKLLSSMISRMPAGQVSILSAEN---GKTTIQSGVVQFEIQSMPANDFPE 117

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                   +  + + VLK++++RT +A++ +E +    G  F I  +  KL  VA DG+R
Sbjct: 118 LPNTGAEETLTIKTGVLKDMIDRTLYAVSQDEKKPAHTGELFEILPD--KLTVVALDGYR 175

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSESRIHLNIESLSMSV 239
           LA+ E  + A   K   IIVP K + E+  +L +  +  V +S +   +       ++  
Sbjct: 176 LAIVERPVTA--VKDIRIIVPSKTMTEVAHLLPNDDEEPVHISANRRYVVFMAGGYTIMS 233

Query: 240 RLIDGEFPNYQNV 252
           RLI+GEF NY+NV
Sbjct: 234 RLIEGEFLNYRNV 246


>gi|213581271|ref|ZP_03363097.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 170

 Score =  190 bits (484), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 56/171 (32%), Positives = 92/171 (53%), Gaps = 4/171 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           +  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+
Sbjct: 118 NLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR 168


>gi|119383721|ref|YP_914777.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222]
 gi|119373488|gb|ABL69081.1| DNA polymerase III beta subunit family protein [Paracoccus
           denitrificans PD1222]
          Length = 372

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 170/391 (43%), Gaps = 41/391 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           IT   +D+   +  A  ++ER+NTIPV   + ++  +  L I+++  +  +    PA+  
Sbjct: 15  ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFPST 121
                 + A LL  ++   +    +S   +   G  V +  G +   +Q     S++P+ 
Sbjct: 75  EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              + +    +  + L  ++ R  +A++TEE RYYLNGI+ H    + +L   ATDGHRL
Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMH--GREGRLAVTATDGHRL 189

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238
           A+   DI     K+P +I PR +V  +  +++   +    +  S    R+ ++ +  S++
Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246

Query: 239 VRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQ--AVDRVSIMSSVRIQAVKLSLSSDK 294
           V+ IDG +P+Y  VIP          +N   LR+     R+ ++         L    DK
Sbjct: 247 VKCIDGAYPDYTRVIPDRGTMRGYAVINRALLRRFPNTRRMHLLRDA------LKFDLDK 300

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
               +++  +G     + +  +     I FN  Y+ E+     +       V     ++ 
Sbjct: 301 RVANLNSVGLG-IDVEIPIEADG-DFAIGFNEGYVREVARIFDT-------VRIEASTAR 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  I  +D D             V+MPMR+
Sbjct: 352 DAALILTEDPDLTV----------VVMPMRV 372


>gi|313667262|ref|YP_004049663.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM
           14977]
 gi|313153893|gb|ADR37743.1| DNA polymerase III, beta subunit [Oceanithermus profundus DSM
           14977]
          Length = 406

 Score =  190 bits (483), Expect = 3e-46,   Method: Composition-based stats.
 Identities = 80/400 (20%), Positives = 153/400 (38%), Gaps = 39/400 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           ITVE   +   L    R++  +++ P    V L   +G L +  +    ++   +PA   
Sbjct: 29  ITVETKALKGALDRLARVLPARSSEPAYLSVALTPAEGALVLAGTNGAQDLELVLPAEAP 88

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
              +  V A  L  +VR L  G      +    G  + +  G     L      +     
Sbjct: 89  PGPTRLVPAAPLTQVVRSLGAGTVTLTLE----GETLTLEAGRFATRL-HLSAGDLELPL 143

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +        L ++ L  L+E   +A + E  R    G+   ++ E  +L  VA+DG RLA
Sbjct: 144 DFGGDPLASLPAAELAALLEPVAYATSNENYRAVFTGVQLEVHPE--RLRGVASDGFRLA 201

Query: 183 VAEVDIVAQI----------------AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES 226
           + +  +                     +  +++VP+ +V E+LR+L   +  V++     
Sbjct: 202 LVDRPLPEGAAVHRTFPVPEDGDGAAPEPLALVVPKASVVELLRVLRGVEGVVQLHHRPG 261

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           R+ L+ E +  +  L+DG +P Y  VIP         +    R+A+ R ++MS      V
Sbjct: 262 RLALHAEGVRYATALLDGTYPEYARVIPAEAPFVAEFDVRPFREALRRTTVMSDATNHRV 321

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            L+    ++ +  +  D G+  E +  + Y   P+    N  YL + +        V   
Sbjct: 322 DLTFEEGRVRLVSEG-DYGRGEEVLEGIDYQGEPLTTALNASYLEDALG------PVARR 374

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
               L    + + +R  +               V++P+R+
Sbjct: 375 ARLDLTGPTTPLAVRDAEA--------LDGYLAVVVPLRV 406


>gi|39938488|ref|NP_950254.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M]
 gi|39721597|dbj|BAD04087.1| DNA polymerase III beta subunit [Onion yellows phytoplasma OY-M]
          Length = 378

 Score =  189 bits (481), Expect = 5e-46,   Method: Composition-based stats.
 Identities = 84/393 (21%), Positives = 173/393 (44%), Gaps = 30/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + + +   LE L    +I+ +K   P+   + +Q  +  L ++A+   I I   I   
Sbjct: 1   MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENNLILEANNGNIAIKIEIKDE 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   G I        +I++K+ D        EN     + I      + L+      
Sbjct: 61  SLKIKKQGKIACLGRYFIEIIKKISDSLIKITVMENNF---LVIKTSFCEYKLKLMDVCN 117

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           F       + + SF++ +  LKN+++  + + +  E R  L G+        LK C  AT
Sbjct: 118 FLELDFSFQKLDSFQIETHFLKNMIKEINISTSKNEKRPILMGLNLIYQNNLLKAC--AT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIESL 235
           D  R++  ++++  +     +I++P K++ E+ +IL    S      S+++ I L I++L
Sbjct: 176 DSFRMSQKKINLDIEY-HNFNIVIPNKSLEELSKILEHCQSKYLKIYSDTQKIFLEIDNL 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV---RIQAVKLSLSS 292
                L++G +P  Q +   +    + +N  +L +A++RVS++ S        +K  L+ 
Sbjct: 235 WFQTSLLEGNYPQIQEIKLTNFPFSVHLNKDDLMKALERVSLLFSKEQMNTNVIKFILTK 294

Query: 293 -DKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            + + ++  +  +G A+E  + +  +     I FN KYL +++  +S       EVVF  
Sbjct: 295 QNSIEISSSSESLGTALEKIIPLKVSANSFQIAFNAKYLEDVLKVLS-----VKEVVFYF 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           D+      I   +KDS         + ++++P+
Sbjct: 350 DNPLKPFIITTLEKDS---------SIHLILPI 373


>gi|187918303|ref|YP_001883866.1| DNA polymerase III, beta chain [Borrelia hermsii DAH]
 gi|119861151|gb|AAX16946.1| DNA polymerase III, beta chain [Borrelia hermsii DAH]
          Length = 386

 Score =  189 bits (481), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 164/399 (41%), Gaps = 36/399 (9%)

Query: 2   KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           K    +   I + +  A  II  +N   +   +LL+  +  L IKA+   I     IP  
Sbjct: 4   KFILCDTEQISDEIEKAKSIILNRNINDIWSAMLLEVENSNLTIKATDRNIFFESTIPIV 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQIS---FFKENELGTEVNISHGDSNFYLQSFPESE 117
                 + ++A    D V+ L    ++       EN L       +   N       E  
Sbjct: 64  STENFKVLINASNFSDAVKALNLYNELKIKFREDENRLNIIGESENKSENCTNDHLSEPT 123

Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           F              E Y ++ +L     K ++ +  F+ + +E +  LNGI+F    +D
Sbjct: 124 FSNEDIESYNYDINGETYNFTVDLNQKEFKKIINKISFSASHDESKNVLNGIYF-TKNKD 182

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L  V+T+ HR++V + ++V    +  + IVP K    +L+ +   +  +K+ +S+ + 
Sbjct: 183 STLTLVSTNSHRMSVYKTELV--FEEDINFIVPVKMFN-LLKQMMIGEGMIKLKVSDKKF 239

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
           ++   +  ++  LI+G +P+Y+++IP        V  + L+  + RV+  +  R + V L
Sbjct: 240 YVEFNNYKIACSLINGNYPDYESIIPNEQQNRSLVEISVLKDRLARVNSYTDKRSKKVIL 299

Query: 289 SLSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           + SS +L +  ++P  G+  E      N  Y      I  N  YL E +    + +    
Sbjct: 300 NFSSKQLRLMAEDPITGRKGEFFIQDPNYDYEGSEEAIAINSAYLTEAMGVFDTSK---- 355

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
                +  S   +         K N+ +  +  +++MPM
Sbjct: 356 ---LEIKFSGGGIL--------KLNEPDNFDFIHLIMPM 383


>gi|88697514|gb|ABD48451.1| DnaN [Morganella psychrotolerans]
          Length = 193

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 73/199 (36%), Positives = 114/199 (57%), Gaps = 7/199 (3%)

Query: 24  KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQ 82
           + T+P+  ++LL+ +DG+L +  +  E+E+   +        G  TV A    DI R L 
Sbjct: 1   RPTLPILGNLLLKVSDGVLHLTGTDLEMEMMAGVSLVQPHENGETTVPARKFLDIWRGLP 60

Query: 83  DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVE 142
           DGAQIS   +   G  + +  G S F L + P S+FP+  + +   +F L  + LK L+E
Sbjct: 61  DGAQISVELD---GDRLLVRSGRSRFSLSTLPASDFPNLDDWQSDVTFSLPQATLKRLIE 117

Query: 143 RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPR 202
            T F+MA +++RYYLNG+ F  +   L+   VATDGHRLAV  +DI   +    S+IVPR
Sbjct: 118 STQFSMAHQDVRYYLNGMLFETSGSVLR--TVATDGHRLAVCSLDIGQDLPD-HSVIVPR 174

Query: 203 KAVGEILRILSSKDSSVKV 221
           K V E++R+L   ++ +K+
Sbjct: 175 KGVIELMRLLDGGEALLKL 193


>gi|119383096|ref|YP_914152.1| DNA polymerase III, beta subunit [Paracoccus denitrificans PD1222]
 gi|119372863|gb|ABL68456.1| DNA polymerase III beta subunit family protein [Paracoccus
           denitrificans PD1222]
          Length = 372

 Score =  189 bits (480), Expect = 6e-46,   Method: Composition-based stats.
 Identities = 90/391 (23%), Positives = 170/391 (43%), Gaps = 41/391 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           IT   +D+   +  A  ++ER+NTIPV   + ++  +  L I+++  +  +    PA+  
Sbjct: 15  ITCTVADLRRAVNAAAFVVERRNTIPVLGCLRIEPLNDKLRIESTNLDSWLMVDCPATCI 74

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE-SEFPST 121
                 + A LL  ++   +    +S   +   G  V +  G +   +Q     S++P+ 
Sbjct: 75  EGKPFVIDARLLLALLTGAERDDSVSITLD---GNVVTLRIGPAVARVQLLCPASDWPTA 131

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              + +    +  + L  ++ R  +A++TEE RYYLNGI+ H    + +L   ATDGHRL
Sbjct: 132 PSTKGMSWVSIPEAALARMIGRVRWAISTEETRYYLNGIYMH--GREGRLAVTATDGHRL 189

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS---VKVSLSESRIHLNIESLSMS 238
           A+   DI     K+P +I PR +V  +  +++   +    +  S    R+ ++ +  S++
Sbjct: 190 ALYHSDIE---YKLPDLIFPRYSVAALCNLMTDGGNQLLRIGGSADPVRMQISGDGWSLT 246

Query: 239 VRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQ--AVDRVSIMSSVRIQAVKLSLSSDK 294
           V+ IDG +P+Y  VIP          +N   LR+     R+ ++         L    DK
Sbjct: 247 VKCIDGAYPDYTRVIPDRGTMRGYAVINRALLRRFPNTRRMHLLRDA------LKFDLDK 300

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
               +++  +G     + +  +     I FN  Y+ E+     +       V     ++ 
Sbjct: 301 RVANLNSVGLG-IDVEIPIEADG-DFAIGFNEGYVREVARIFDT-------VRIEASTAR 351

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  I  +D D             V+MPMR+
Sbjct: 352 DAALILTEDPDLTV----------VIMPMRM 372


>gi|152965735|ref|YP_001361519.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
 gi|151360252|gb|ABS03255.1| DNA polymerase III, beta subunit [Kineococcus radiotolerans
           SRS30216]
          Length = 391

 Score =  189 bits (480), Expect = 8e-46,   Method: Composition-based stats.
 Identities = 79/384 (20%), Positives = 154/384 (40%), Gaps = 26/384 (6%)

Query: 5   VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI--EITGAIPASVD 62
           V+   + E L     +I R+  +P+   V L      L ++ +  ++    T  +P    
Sbjct: 24  VDSKALAEALTDVNALIGRRPPVPILAGVRLDVEGDQLTLRRTNYDVVNTATLQLPQVGH 83

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESEFPST 121
              S  VSA     IVR +  GA I     +  G E + I+     + L +    ++P+ 
Sbjct: 84  PARSTVVSASAFAAIVRAIGPGASIILTLLHRSGREFLRIAGDGVTYQLITMDAGDWPAI 143

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             +E  +   +++  ++ L      A + +     ++ +     E    L A ATD  RL
Sbjct: 144 PADEVQHIATVSADDVQALALAGTAATS-DFTLPIIHAVRL--TERQGSLVAAATDRFRL 200

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
              +V+ +  +      +VP  A+  I R L+ ++  V +S  +  I   + S S  V+ 
Sbjct: 201 --LDVNTLHPVPAGFQALVPTDALEHIAR-LAKREGEVTISTVDEFIVFVVGSRSCRVKC 257

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
           +DGE+P   ++ P  +     V+  +L +A+ R+ ++++ R   V+L+   + + +   +
Sbjct: 258 VDGEYPKVDSLWPPESPIAATVDRGDLARALRRL-MVATPRNTPVELAFGRNVVVLIAGD 316

Query: 302 -PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D+                D   N ++LL+ +D +       D V F        V I 
Sbjct: 317 KTDLDATTTVATTLTGAEAFDAALNPQFLLDGLDAVGG-----DRVTFAFTVPYRPVVIT 371

Query: 361 GKDKDSKNNKDNKVNAFYVLMPMR 384
           G           + N  Y+ MP+R
Sbjct: 372 G----------GRPNTRYLQMPVR 385


>gi|85057282|ref|YP_456198.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
 gi|84789387|gb|ABC65119.1| DNA polymerase III, beta subunit [Aster yellows witches'-broom
           phytoplasma AYWB]
          Length = 378

 Score =  188 bits (479), Expect = 9e-46,   Method: Composition-based stats.
 Identities = 81/393 (20%), Positives = 170/393 (43%), Gaps = 30/393 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + + +   LE L    +I+ +K   P+   + +Q  +  L ++A+   I I   I   
Sbjct: 1   MYLEINKDIFLEQLLKIQKILPQKTFFPIFNALKIQTQENKLILEANNGNIAIKIEIKDK 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   G I        +I++K+ D        EN       I      + L+      
Sbjct: 61  SLKIKKQGKIACLGRYFIEIIKKINDSLIKITVMENNFLVIKTIFC---EYKLKLMDVCN 117

Query: 118 FPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           F       + +  F++ +   KN+++  + + +  E R  L G+        LK C  AT
Sbjct: 118 FLELDFSFQKLDFFQIETHFFKNIIKEVNISTSKNEKRPILMGLNLIYQNNLLKAC--AT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIESL 235
           D  R++  ++++  +     +I++P K++ E+ +IL    S      S+++ I L I++L
Sbjct: 176 DFFRMSQKKINLDIKY-HNFNIVIPNKSLEELSKILEHCQSKHLKIYSDAQKIFLEIDNL 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSS 292
                L++G +P  Q +   +    + +N  +L +A++RVS++     +    +K  L+ 
Sbjct: 235 WFQTSLLEGNYPQIQEIKLTNFPFSIHLNKDDLMKALERVSLLFYKEQINTNVIKFILTE 294

Query: 293 -DKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            + + ++  +  +G A+E  + +  +     I FN KYL +++  +S       EVVF  
Sbjct: 295 RNSIEISSSSESLGTALEKIIPLKVSANSFQIAFNAKYLEDVLKVLS-----VKEVVFYF 349

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           D+      I   +KDS         + ++++P+
Sbjct: 350 DNPLKPFIITTLEKDS---------SIHLILPI 373


>gi|126658731|ref|ZP_01729876.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
 gi|126619993|gb|EAZ90717.1| DNA polymerase III subunit beta [Cyanothece sp. CCY0110]
          Length = 391

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 77/398 (19%), Positives = 173/398 (43%), Gaps = 23/398 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M I+   + +++ L  A ++I    T  +  +V+L+A   +L+++A   +I ++  +  A
Sbjct: 1   MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G + V+      ++  L+D   I+   + E     +    ++ F      E  + 
Sbjct: 61  NINTPGEVAVNCKDFLTLLNTLKDEVAITLSADEEYLHLKSQQGKEAKFAKGDIEEMPWI 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDG 178
            +  EE +    + +  L   VE T +A+ATE  +  L G+  + + +E+  +   ATDG
Sbjct: 121 DSLTEEEIEQVSIEADDLIQAVEETKYAVATEMAKAILCGVCLNFDTDEENTVEFAATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPS-IIVPRKAVGE----ILRILSSKD--SSVKVSLSESRIHLN 231
           HRLA   V          + +++P + +      + ++ +S++    V +S  E++I ++
Sbjct: 181 HRLARTRVLYEPSENNPENKLVMPTETLTLTAYALKQMETSEEIAEMVTISFDENKIQVD 240

Query: 232 IESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                +  R +DG++P+Y+ +I       +   N   L +A+  +   +  +     +  
Sbjct: 241 FSEGFIRSRKLDGKYPDYEMLINGDDFSLDCTFNRKQLLEALKFIDTFAVGKDSLCFIDF 300

Query: 291 SSDKLCMTVDNPD--MGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             ++   T+ + +   G A +++ V   N     + FN  YL + +  +  D V   E+ 
Sbjct: 301 DPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNSNYLKQCLKAMPGDTVT-MEIT 359

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    VFI   ++            F ++MP++I
Sbjct: 360 ETTGDQPGPVFISPLEE---------YKTFGLVMPIQI 388


>gi|237738340|ref|ZP_04568821.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC
           9817]
 gi|229420220|gb|EEO35267.1| DNA polymerase III beta subunit [Fusobacterium mortiferum ATCC
           9817]
          Length = 376

 Score =  188 bits (478), Expect = 1e-45,   Method: Composition-based stats.
 Identities = 82/395 (20%), Positives = 167/395 (42%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           MKI +ER + L+ L    + I      P+     ++     L    +  E  IT  +   
Sbjct: 1   MKIQIERIEFLKRLKVVEKTITENKIKPIISCAYIETRGDNLFFCGTNLETTITTEMKCK 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I     L+ + +++L+D   +    +      + I   DS+         +FP
Sbjct: 61  EVIESGKIVFQHQLVEEYLKELKDEFVVFSEIDGN----LVIESSDSSSEFSLMNVEDFP 116

Query: 120 STKEEEY----VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
               +E        F++ S  L  ++E+  +A ++      +N +      E+ KL  + 
Sbjct: 117 KILVDEDFSQKEEIFKINSIELAEILEKVKYAASSSSDNLSINCVRME--NENKKLKFIT 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIES 234
           TD +RL   E +I  +I +   + +P   V  + ++L S +S  +       +I   +E 
Sbjct: 175 TDTYRLVYLEKEIE-KINENIDVSIPLNTVEALTKLLRSIESTDISFYFINRQIFFKMEE 233

Query: 235 LSMSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
           + +  R+ID  FPNY+ ++   S +K+L +N     + + R++I    ++         L
Sbjct: 234 VLVISRIIDMSFPNYKGILGNNSYNKKLTINAEVFLKMLKRITIFVRNNNETKYGATFYL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
              ++ +   N ++ K  E + V Y    + I  N K+L + +  ++ ++    ++    
Sbjct: 294 EKKEMQVHGVN-EVAKINEVLEVNYEGENIKIALNTKFLSDFVQTLNKNK----DITLEF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +SNSSV I+ ++ +         +  YVLMP+ +
Sbjct: 349 IASNSSVKIKEEEAN---------DYLYVLMPLAL 374


>gi|313664892|ref|YP_004046763.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50]
 gi|312949557|gb|ADR24153.1| DNA polymerase III, beta subunit [Mycoplasma leachii PG50]
          Length = 375

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 69/373 (18%), Positives = 154/373 (41%), Gaps = 19/373 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  ++ R  +L+ L  A ++I+ KN  P    + L   +  + + A+   +     +   
Sbjct: 1   MNFSINRMILLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQINVIATSGILSFKSILNNQ 60

Query: 58  --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V   G + +    + +++R+L D   +    E     E+ I   +S+F +     
Sbjct: 61  NSDLEVKQEGKVLLKPKYVLEMLRRLDDQFVVFSMVEE---NELIIKTDNSDFSVGVLNS 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P     E    F L    +K  + +   +M     +  L G+   +           
Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTNNQAIFS--T 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  R++   ++I +   +   I +P K   E+ ++L + + ++K+ + E  I   I+++
Sbjct: 176 TDSFRISQKILEIQSNNNEDIDITIPFKTALELPKLLDNAE-NLKIIIVEGYITFIIDNV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294
                LIDG+FPN Q   P   +  + V   ++ + + R  +++   + A V + ++ DK
Sbjct: 235 IFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294

Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +       ++GK  E  +  V      + I FN ++L++ I  ++     +D +  +L +
Sbjct: 295 IEFKSFISEVGKYEEDFDNFVIEGNKSLSISFNTRFLIDAIKTLN-----EDRIELKLIN 349

Query: 353 SNSSVFIRGKDKD 365
               + I     +
Sbjct: 350 PTKPIVINNVYDE 362


>gi|83319869|ref|YP_424002.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
 gi|1169394|sp|P24117|DPO3B_MYCCT RecName: Full=DNA polymerase III subunit beta
 gi|83283755|gb|ABC01687.1| DNA polymerase III, beta subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 375

 Score =  187 bits (476), Expect = 2e-45,   Method: Composition-based stats.
 Identities = 70/373 (18%), Positives = 157/373 (42%), Gaps = 19/373 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  ++ R  +L+ L  A ++I+ KN  P    + L   +  + +  +   +     +   
Sbjct: 1   MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60

Query: 58  --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V   G + +    + +++R+L D   +    E+    E+ I   +S+F +     
Sbjct: 61  NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVED---NELIIKTNNSDFSIGVLNS 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P     E    F L    +K  + +   +M     +  L G+   +   + +     
Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKL--NNNQAIFST 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  R++   ++I +   +   I +P K   E+ ++L + + ++K+ + E  I   I+++
Sbjct: 176 TDSFRISQKILEIQSDNNEDIDITIPFKTALELPKLLDNAE-NLKIIIVEGYITFIIDNV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294
                LIDG+FPN Q   P   +  + V   ++ + + R  +++   + A V + ++ DK
Sbjct: 235 IFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294

Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +       ++GK  E  +  V      + I FN ++L++ I  +S     +D +  +L +
Sbjct: 295 IEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLS-----EDRIELKLIN 349

Query: 353 SNSSVFIRGKDKD 365
           S   + I     +
Sbjct: 350 STKPIVINNVYDE 362


>gi|256374406|ref|YP_003098066.1| DNA polymerase III subunit beta [Actinosynnema mirum DSM 43827]
 gi|255918709|gb|ACU34220.1| DNA polymerase III, beta subunit [Actinosynnema mirum DSM 43827]
          Length = 365

 Score =  187 bits (475), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 74/386 (19%), Positives = 151/386 (39%), Gaps = 25/386 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T   S++   +    R++  +   PV   V+L+A  G +E+  S  E  +  +  A+
Sbjct: 1   MDLTATTSELASAVADVARLLPGRVLDPVLAGVVLRAGPGGVELSGSDRERSLRLSRAAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G+  V A  L + +R L +  Q+    E   G+ + +  G + F L      + P 
Sbjct: 61  THSEGAALVPAKPLAETLRAL-ESPQVRLVVE---GSRLAVRTGAARFALPLLELGDHPG 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   V      +    + +     A + ++      G+  H   +  +L  + +D +R
Sbjct: 117 VPELPPVAG-SAPAGAFASALAAVATAASKDDALPVFTGVRVHAAGD--RLELITSDRYR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L  A V            + P   + E+ +  +++D  V++     R+ L     S S  
Sbjct: 174 LGFASVPWAGGALD---ALAPAVQLAEVAKQ-AARDERVELRADADRLALAWGGGSASTA 229

Query: 241 LIDGEFPN--YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           L+   FP+   + ++    +  + +    L  AV R +  S     AV+L+    +L + 
Sbjct: 230 LLAAPFPDERARKLLAAEGECTVVLEADELAGAVRRAAPYSGAH-GAVQLAAEDGELRVR 288

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +P  G++ ES+    +   +   F  +YL + +   +        V  R+ S   S  
Sbjct: 289 GSDPQAGESSESVKASVSGGLLTRSFQVRYLSDALRAFAGR-----RVELRVQSGLRSTV 343

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  ++  S       V   Y+++P+R
Sbjct: 344 LTAEEDTS------GVRLTYLVVPLR 363


>gi|315452737|ref|YP_004073007.1| DNA polymerase III subunit beta [Helicobacter felis ATCC 49179]
 gi|315131789|emb|CBY82417.1| DNA polymerase III, beta subunit [Helicobacter felis ATCC 49179]
          Length = 356

 Score =  186 bits (474), Expect = 3e-45,   Method: Composition-based stats.
 Identities = 78/389 (20%), Positives = 163/389 (41%), Gaps = 37/389 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  + ++++   L        +K+ + ++ HV ++A    L  +A+  E+ +   +   
Sbjct: 1   MKFIIAKTELEAALKDLIAFTNKKDMVNITSHVCIEAKTDALIFQANDLEMGLCLTLNIP 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  ++A  L DI+ KL+ G  +   ++N     +++    S F L    +  FPS
Sbjct: 61  AQETGSAVLNAKYLLDIISKLEKGDLLLESQDNF----MHVHFKRSKFKLPLLDKEYFPS 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +++       S L +  ++    + T   +Y  +G+   + E    L  VATD  R
Sbjct: 117 FPTYDHLPVVYFDDSTLSDYFKKLAQVITTNASKYEFSGVLLALQEN---LELVATDTKR 173

Query: 181 LAVAEVDI-VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           L+V +++I     A    +I+P++A+ E+ ++        ++   ++ I     S+ +  
Sbjct: 174 LSVVQMEIGGTTSADRQELILPKRAMLEVAKLFR---GDFEMRYDKNMIFFKNASMVLFA 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL---C 296
           +LI G++P+YQN+IP +   +L  N  + + A++    + +      K+    DK+    
Sbjct: 231 KLISGKYPHYQNIIPSTFAHQLECNTQDFKDAINITQALGATT----KIIFRPDKIEFET 286

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  +NP         +   +     I    ++LL+ +  +S+         F L   N  
Sbjct: 287 LQTENPSFASTFVEASTPLDG--FVIHAQARHLLDALSALSTPTFD-----FCLSVENQP 339

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             I+            K     V+MP+ I
Sbjct: 340 FVIQ------------KNGFITVVMPVAI 356


>gi|228949343|ref|ZP_04111606.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
 gi|228810326|gb|EEM56684.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           monterrey BGSC 4AJ1]
          Length = 379

 Score =  186 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 171/401 (42%), Gaps = 39/401 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M+ T+ + ++L  L    +   R   +P+ C + L+A    L + AS  E  I   I   
Sbjct: 1   MEFTINKQELLNNLVKVGKYSARSTNLPILCGIYLKATANELLLVASNKEDTIVSTISEI 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              ++   G + V    + DIV+KL +   +SF  +N     ++IS G + + L +   +
Sbjct: 61  QNFNIVQEGEVVVP-KTITDIVKKLPNDT-VSFTLDN--NNSLHISSGKTKYSLNTLSAN 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P    +   +   ++   L+  VE T++  A    +  L GI   I+  + ++   AT
Sbjct: 117 DYPDFTTKTLKFLVSISLKKLQRSVEATYYCAAENHSKPQLKGI--EISITNKEIAFAAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           D + L+ + + I            S IVP + + + +++   +D  +++    +   L  
Sbjct: 175 DANTLSRSTIPITTDNNTEEKLLYSCIVPSRWLYDAIKMF--EDEEIELGFEGNSAILRS 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRI----QAV 286
           + L +  ++I+G++P+    +         +  +   L  ++++V+++ S+        +
Sbjct: 233 KDLHIKTQIIEGKYPDVVKFMEFEKTVKTTISTDRLQLINSLEQVNVICSMNNPKSAALL 292

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDD 344
            L L+S +  ++ +N  +G  I    +       P+ I F+  Y+L  + ++ +D     
Sbjct: 293 NLELNSKEFSLSNNNKSLGDVIVKNPIEIEGESIPISIGFSIDYMLRHLKSMQADV---- 348

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V     +  S +  R  D +             +++P+RI
Sbjct: 349 -VKIGFIAEQSPLIFRNMDSEDFK----------LMLPIRI 378


>gi|157736273|ref|YP_001488956.1| DNA polymerase III subunit beta [Arcobacter butzleri RM4018]
 gi|157698127|gb|ABV66287.1| DNA polymerase III, beta subunit [Arcobacter butzleri RM4018]
          Length = 356

 Score =  186 bits (474), Expect = 4e-45,   Method: Composition-based stats.
 Identities = 78/385 (20%), Positives = 168/385 (43%), Gaps = 35/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  + ++ +  ++      +E+K++  ++ H+ L+ N+  L IKA+  EI +   I   
Sbjct: 1   MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +  V G  TV+   L  I+++L++   I     N     + I    S F L ++  +EFP
Sbjct: 61  TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNN----LVIKQNKSTFKLPTYDANEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E +    +++    N + +   A+     ++ LNG    I     K+  V+TD  
Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIK--SQKINFVSTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +         +I+P+KA+ EI ++   +    K+S   + + ++ +      
Sbjct: 175 RLALSF--LENMNNDEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y+ +IP +      +    L +++  V+ +       +K++ SS  +    
Sbjct: 230 KLINGKFPDYERIIPSNLKHNFFLPKNVLVESIKLVTSL----FSNIKITFSSKSIIFES 285

Query: 300 DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   +++  N      +  N KYLL+ +         +++V    + SN   +
Sbjct: 286 LDEDS-EAKTQIDIDLNIPNEFFLAVNAKYLLDFLS-----MTNNEKVKIGFNESNLPFY 339

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +                   ++MP+
Sbjct: 340 LE------------DDKFITIVMPI 352


>gi|296271547|ref|YP_003654178.1| DNA polymerase III subunit beta [Arcobacter nitrofigilis DSM 7299]
 gi|296095722|gb|ADG91672.1| DNA polymerase III, beta subunit [Arcobacter nitrofigilis DSM 7299]
          Length = 356

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 74/385 (19%), Positives = 168/385 (43%), Gaps = 35/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M+  + ++    ++      +E+K++  ++ H+ L+  +  L +KA+  EI +   +   
Sbjct: 1   MRFIIAKNIFENIISSMQPFLEKKDSSSITSHIYLEVINSKLILKATDYEIGLESYVNDI 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G  TV+   L  I+++L++   I    +N     + I    S F L  +  +E+P
Sbjct: 61  EESTDGKGTVNGSNLLGIIKRLKNDKIIVETIDNN----LVIKQSRSTFKLPMYDANEYP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           +      +    +++  L N + +   A+     ++ LNG    I   + K+  VATD  
Sbjct: 117 NLIMNTELNILNISTISLVNSIRKITPAIDNNNPKFELNGALIDIK--NSKINFVATDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++ +  ++        I+P+KA+ EI ++        K++  ++ + +  ++     
Sbjct: 175 RLAISHLQNISN--NESQFIIPKKAIIEIQKLFLD---DAKIAYDDTNLVIETDNSKFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y+ +IP S    L +    L  ++  V+ +       +K++ S + +    
Sbjct: 230 KLINGKFPDYERIIPNSLKYNLTLPKAMLIDSIKLVTSL----FSNIKITFSPNSMVFES 285

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  ++   +++  N      +  N KYLL+ +   +     ++ VV   + SN   +
Sbjct: 286 LDEDT-ESKTQIDIDLNISENFYLAVNAKYLLDFLSMSN-----NENVVVGFNESNLPFY 339

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +                 F ++MP+
Sbjct: 340 LE------------DDKFFTIVMPI 352


>gi|257469128|ref|ZP_05633222.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185]
 gi|317063375|ref|ZP_07927860.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
 gi|313689051|gb|EFS25886.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
          Length = 376

 Score =  186 bits (473), Expect = 5e-45,   Method: Composition-based stats.
 Identities = 79/395 (20%), Positives = 163/395 (41%), Gaps = 31/395 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M + ++R D L+ L    + I      P+     ++     L    +  E  IT  +   
Sbjct: 1   MIVKLKRQDFLKRLKIVEKAINENKIKPIISCAYIETRGENLFFCGTNLETTITTEMKCE 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            +   G I     L+ + +R+++D       ++N     + I   DS+         +FP
Sbjct: 61  EIVEEGRIVFQHQLVDEYLREIKDEIVTLSVRDNN----LFIESSDSSSEFSLMEAEDFP 116

Query: 120 ST----KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
                    +    F++ S  L ++ E+  FA +T      +N +       +LK   + 
Sbjct: 117 KILVEADFFQRQEDFKMNSVELADIFEKVKFAASTSSDNLSINCVRLESEVNNLKF--IT 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIES 234
           TD +RL   E ++  ++ +   + +P   +  + ++L S +++ +K      +++  +E 
Sbjct: 175 TDTYRLVFLEKELE-KVNEKLEVSIPLNTIEALTKLLRSIEETEIKFYFYNKQVYFKLED 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
             +  R+ID  FPNY+ ++  +  +K L +N     + + R+ I    ++         L
Sbjct: 234 TLIISRVIDLAFPNYKGILGNNTYNKTLLINSEKFLKVLRRIIIFVRNNAESKYGATFEL 293

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L +   N D+ K  E + V Y    + I  N K+L + I N++ +      ++   
Sbjct: 294 EGKDLKVNGVN-DIAKINEQLEVEYEGDRIKISLNAKFLSDFIQNLNKE----SNIMLNF 348

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            SSN SV I+ ++ D         N  Y++MP+ +
Sbjct: 349 ISSNGSVKIKKENDD---------NYLYIVMPLAL 374


>gi|315635402|ref|ZP_07890668.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri
           JV22]
 gi|315480160|gb|EFU70827.1| DNA-directed DNA polymerase III beta subunit [Arcobacter butzleri
           JV22]
          Length = 356

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 168/385 (43%), Gaps = 35/385 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           MK  + ++ +  ++      +E+K++  ++ H+ L+ N+  L IKA+  EI +   I   
Sbjct: 1   MKFVITKNILENVIASMQPFLEKKDSSAITSHIYLEINNSNLIIKATDYEIGLESFIDNL 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +  V G  TV+   L  I+++L++   I     N     + I    S F L ++  +EFP
Sbjct: 61  TNTVDGKTTVNGSNLLGIIKRLKNEDIILEATNNN----LVIKQNKSTFKLPTYDANEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
              + E +    +++    N + +   A+     ++ LNG    I     K+  V+TD  
Sbjct: 117 VLNKSENLKELSISTINFINSIRKITPAIDNNNPKFELNGALLDIK--SQKINFVSTDTR 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RLA++   +         +I+P+KA+ EI ++   +    K+S   + + ++ +      
Sbjct: 175 RLALSF--LENMNNDEAQLIIPKKAIIEIQKLFLDE---AKISYDNTNLVISNQHTKFFT 229

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP+Y+ +IP +      +    L +++  V+ +       +K++ +S  +    
Sbjct: 230 KLINGKFPDYERIIPSNLKHNFFLPKNVLVESIKLVTSL----FSNIKITFNSKSIIFES 285

Query: 300 DNPDMGKAIESMNVYYNEC-PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   +++  N      +  N KYLL+ +         +++V    + SN   +
Sbjct: 286 LDEDS-EAKTQIDIDLNIPNEFFLAVNAKYLLDFLS-----MTNNEKVKIGFNESNLPFY 339

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +                   ++MP+
Sbjct: 340 LE------------DDKFITIVMPI 352


>gi|288561735|ref|YP_003429141.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
 gi|288548367|gb|ADC52249.1| DNA polymerase III subunit beta [Bacillus pseudofirmus OF4]
          Length = 373

 Score =  186 bits (472), Expect = 6e-45,   Method: Composition-based stats.
 Identities = 70/379 (18%), Positives = 175/379 (46%), Gaps = 26/379 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV + ++L+ +    + I+      V   + ++A +  + +  S     I   IP  
Sbjct: 1   MKLTVMKEELLKGIDAVSKAIKGSQQELVYKSIKIEATEKGILLTGSNGVFTIVRMIPLE 60

Query: 61  VDV--------CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                       G++ V+  +L + V+K+         K  + G  +    G     L  
Sbjct: 61  FKGSEIATLVNEGTVLVNGKILLEAVKKMPK----EDIKIEQEGAVLKFKSGKFQVKLNI 116

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
             E ++P+  E +   SF L  S+LK +++++ +A +T E R  LNG+   I++  + L 
Sbjct: 117 LTE-DYPAPPEVDGA-SFTLEQSLLKQVLDQSVYACSTSEGRPILNGVKLSIDQGIMNL- 173

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS-VKVSLSESRIHLN 231
            +AT+ + ++  + D+  +   +P+I++P   + E+  +L++ + +   ++ SE  + +N
Sbjct: 174 -MATNSYIMSSLQKDLKNEELFLPNIVIPASPLNELQSLLATTEGTKCTLNCSEKHLLIN 232

Query: 232 IES--LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           I      + +RL++G++P  +  IP ++  +++   ++L  +++RVS + S     V++ 
Sbjct: 233 ISHNLTLVYIRLLEGQYPVDRQFIPKNHPIKVKSKRSDLFSSLERVSSLGSEH---VEMK 289

Query: 290 LSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +S   +        +G   + + +V       ++ F  + +L  + +    +   ++++ 
Sbjct: 290 ISGKTVHFYAAQDQVGDLQDELTDVTIEGGETEVAFKPQNVLTALKH---QKYEKEDIIL 346

Query: 349 RLDSSNSSVFIRGKDKDSK 367
            +    S   I   +++++
Sbjct: 347 EIKDGLSPFLITLGNENTQ 365


>gi|42560562|ref|NP_975013.1| DNA polymerase III, beta chain [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|42492058|emb|CAE76655.1| DNA POLYMERASE III, BETA CHAIN [Mycoplasma mycoides subsp. mycoides
           SC str. PG1]
 gi|301320426|gb|ADK69069.1| DNA polymerase III, beta subunit [Mycoplasma mycoides subsp.
           mycoides SC str. Gladysdale]
          Length = 375

 Score =  185 bits (471), Expect = 9e-45,   Method: Composition-based stats.
 Identities = 71/373 (19%), Positives = 153/373 (41%), Gaps = 19/373 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  ++ R  +L+ L  A ++I+ KN  P    + L      + I A+   +     +   
Sbjct: 1   MNFSINRIVLLDNLSKAAKVIDYKNVNPSLAGIYLNVLSDQVNIIATSGILSFKSILNNQ 60

Query: 58  --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V   G + +    + +++R+L D        E+    E+ I   +S+F +     
Sbjct: 61  NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVTFSMVED---NELIIKTDNSDFSIGVLNS 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P     E    F L    +K  + +   +M     +  L G+   +           
Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVSVSMNENNKKLILTGLNLKLTNNQAIFS--T 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  R++   ++I +   +   I +P K   E+ ++L + + ++K+ + E  I   I+++
Sbjct: 176 TDSFRISQKILEIQSNNNEDIDITIPFKTALELPKVLDNAE-NLKIIIVEGYITFIIDNV 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSSDK 294
                LIDG+FPN Q   P      + V   ++ + + R  +++   + A V + ++ DK
Sbjct: 235 IFQSNLIDGKFPNVQIAFPTKFQTIITVKQKSILKVLSRFDLVADDGLPAIVNIKVNEDK 294

Query: 295 LCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +       ++GK  E  +  V      + I FN ++L++ I  ++     +D +  +L +
Sbjct: 295 IEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRFLIDAIKTLN-----EDRIELKLIN 349

Query: 353 SNSSVFIRGKDKD 365
           S   + I     +
Sbjct: 350 STKPIVINNVYDE 362


>gi|260654350|ref|ZP_05859840.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1]
 gi|260630983|gb|EEX49177.1| DNA polymerase III, beta subunit [Jonquetella anthropi E3_33 E1]
          Length = 361

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 79/374 (21%), Positives = 151/374 (40%), Gaps = 26/374 (6%)

Query: 17  ACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-ASVDVCGSITVSAHLLY 75
           A R    +        V ++       ++A+  +  I+ A     V   G+  +   ++ 
Sbjct: 2   AERTTNSRVPQTSLYSVHIRCGQDGTFLEATDLKTSISVAAEGVQVVEEGAALLPVRVIG 61

Query: 76  DIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFE-LAS 134
           ++++K+ D   +      E G    +  G + + +  FP   FP          F  + S
Sbjct: 62  ELLKKI-DSEVVELSVTQERG---MLVAGKNQYDVAVFPTDLFPDMPRPSSDEPFALVPS 117

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
             L  +++    A +  E      G    +  +  +L AV+TDG RL++++    +    
Sbjct: 118 GELIRVLDEGIVAGSVSEEFPRYIGAC-QLQCQKGELRAVSTDGRRLSLSKCLCESGTDG 176

Query: 195 MPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
             S++VP   + E  R L S   D++V+V   ++ +H  +  L  SVR I+  FPNY+ V
Sbjct: 177 --SVLVPLAPMKEFQRFLQSVESDATVRVFTDQALVHFCLPGLEYSVRRIESSFPNYEKV 234

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS-DKLCMTVDNPDMGKAIESM 311
           +       L VN      A++RV ++       V ++LS   ++ +   +P++GKA E +
Sbjct: 235 LRKDFTSTLTVNRGLFIGALERVDLLVRENNHLVVVTLSPSGEMTLVGRSPEVGKACEHL 294

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
           +       +   FN  Y+L+ +          DEV    + SN               + 
Sbjct: 295 SGMITGESLKAAFNANYMLDGLRAFHG-----DEVYMTFNGSN---------GQMNMMRP 340

Query: 372 NKVNAFYVLMPMRI 385
                 Y+LMP+ +
Sbjct: 341 GSDTFLYMLMPVNL 354


>gi|203284346|ref|YP_002222086.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly]
 gi|201083789|gb|ACH93380.1| DNA polymerase III, subunit beta [Borrelia duttonii Ly]
          Length = 386

 Score =  185 bits (469), Expect = 1e-44,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 173/399 (43%), Gaps = 36/399 (9%)

Query: 2   KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           K    +   I + +  A  II  +N   +   +LL+     L IKA+   I     IP  
Sbjct: 4   KFILCDTEQISDEIDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIV 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF---FKENELGTEVNISHGDSNFYLQSFPESE 117
                ++ ++A  L D V+ L    ++       EN+L       + + N+      E  
Sbjct: 64  STDNFNVLINASNLADAVKALNLYDELKMKFKEDENKLDIIGESDNNNENYTNDHLSEPT 123

Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           F             +E Y ++FEL    LK ++ +  F+ + +E +  LNGI+F   + +
Sbjct: 124 FSTEEIENYNYDINDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYF-TKDSN 182

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L  V+T+ +R+++ + D++    +  + IVP K    +L+ + + +  +K  +S+ + 
Sbjct: 183 SVLTLVSTNSYRMSIYKTDLI--FEEDVNFIVPVKMFN-LLKQMITGEGVIKFKVSDKKF 239

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
           ++   +  ++  LI G +P+Y+++IP        ++ +  +  + RV+  +  R + V L
Sbjct: 240 YVEFNNYKIACSLISGNYPDYESIIPNEYTNRALIDVSMFKDRLSRVNSYTDKRSKKVIL 299

Query: 289 SLSSDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           + S ++L +  ++P  G+  E      N  Y      +  N  Y+ E +    + ++   
Sbjct: 300 NFSVNQLKLMAEDPITGRKGEFFMQGSNYDYAGTEEMLAINSVYITEAMGVFDTPKL--- 356

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           E+ F                  K N+++K +  +++MP+
Sbjct: 357 EIKFS------------SGGLLKLNEEDKCDFIHLIMPL 383


>gi|194246592|ref|YP_002004231.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali]
 gi|193806949|emb|CAP18381.1| DNA polymerase III, beta subunit [Candidatus Phytoplasma mali]
          Length = 376

 Score =  185 bits (469), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/396 (19%), Positives = 175/396 (44%), Gaps = 35/396 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M   +++   LE L    +II  K   P+   + ++     L ++++     I   I   
Sbjct: 1   MHFKIKKEIFLEQLLKIQKIIPHKTFFPIFLGIKIKIKKDFLILESTDGNASIKIKIKNE 60

Query: 61  ---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   GS+ +S     +I++K+          EN     + I      + L+    + 
Sbjct: 61  SLKIQEEGSLLISGKYFIEIIKKINSDFIEMKKNEN---NSLTIKTELLEYKLKLMNLNY 117

Query: 118 FPSTKEE-EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           FP      E+    E+  ++ K +++    + A +E +  L GI F   +  LK+  ++T
Sbjct: 118 FPKINFFLEFKEKIEIKGNIFKKIIKEIKISAAKDEKKSILTGINFIYQKPFLKV--LST 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESRIHLNIESL 235
           D  RL+  ++ +     K  +I++  K + E+ +IL   +D ++++  +  ++ L    L
Sbjct: 176 DYFRLSQKKIKLDFNY-KNFNIVIHYKILEELSKILEYYEDDNLQIYFNSKKMFLKANDL 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSS 292
                L++GEFP  Q ++  +   ++++N   L + ++RVS +S+  I     VKL++  
Sbjct: 235 FFQTTLLEGEFPKTQEILENNFIYKIKLNKEKLIKTLERVSFISNKDINDVSVVKLTIKK 294

Query: 293 D-KLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           + K+ ++  N ++G  +E +    N+ +    ++I FN KYL +I+        +  E++
Sbjct: 295 EKKIEISSYNDEIGNIVEEILPLENILF--KEIEISFNAKYLEDILKVF-----LVKEII 347

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
               S+     +   +  +         + ++++P+
Sbjct: 348 ISFQSAFKPFIVTSFEDKT---------SLHLILPL 374


>gi|154148349|ref|YP_001405625.1| DNA polymerase III subunit beta [Campylobacter hominis ATCC
           BAA-381]
 gi|153804358|gb|ABS51365.1| DNA polymerase III, beta subunit [Campylobacter hominis ATCC
           BAA-381]
          Length = 356

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 77/385 (20%), Positives = 169/385 (43%), Gaps = 33/385 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA-IPA 59
           MK+ V++  +  ++ +    +E+K+   ++ H+L+ A DG+L IKA+  EI ++      
Sbjct: 1   MKVIVKKGVLESIVSYTNPYLEKKDLSSITSHILISAMDGVLSIKATDHEIGLSYKNRNV 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V   G  T +   L + ++ L+D            G  + +    S + L  +  ++FP
Sbjct: 61  TVIDEGYATANGSKLMNAIKGLEDDEITLETA----GNSLFVKQKRSKYKLPMYNYTDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    FE+ S +L   +++   ++ T   +Y LNG    I E+ + L  V+TD  
Sbjct: 117 EFPTIENKNRFEINSIILGRSLKKIFPSIDTNNPKYELNGALIDIKEKQINL--VSTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL++  +      A    II+P+KA+ EI ++ S K   V++    +      ES     
Sbjct: 175 RLSLYTIPNQTSTANE-KIIIPKKAINEIQKLFSDK---VEIFYDANVFLAVSESFEFFS 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G+FP Y  ++     + + +    + + +  ++ M      ++K+++ ++ +    
Sbjct: 231 KLINGKFPMYDKLVDTVYSQSVMLPRDKMVEGIKAINSMCD----SMKITIKNNSILFES 286

Query: 300 DNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
            + D  +A   +      E  ++     K+L++ + NI  +        F  ++  ++  
Sbjct: 287 ISEDNSEAKTEIETSIQIENQIEFSIRNKFLMDFLSNIEENSF-----KFDFNNEKTAFC 341

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   D  +            ++MP+
Sbjct: 342 VSSGDLKT------------IIMPI 354


>gi|269114779|ref|YP_003302542.1| DNA polymerase III subunit beta [Mycoplasma hominis]
 gi|268322404|emb|CAX37139.1| DNA polymerase III beta chain [Mycoplasma hominis ATCC 23114]
          Length = 365

 Score =  184 bits (467), Expect = 2e-44,   Method: Composition-based stats.
 Identities = 73/371 (19%), Positives = 163/371 (43%), Gaps = 22/371 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI----EITGA 56
           MK+ +++  +   +    + ++    +PV   +L+QA D  + +  S  E     EI  +
Sbjct: 1   MKLKIDKLLLDNAIERVSKSVDANPFLPVMKGILIQAEDNKITLIGSNGETSIKHEIETS 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           I A +++ G + V   L  +I++KL DG  +     N     + IS  + N+ L  +  +
Sbjct: 61  IDAQIELPGIVLVELSLFKNIIKKL-DGEIVLEVVNN----ILKISTNNENYNLNIYDVN 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+ +     Y    ++  +  K+LV    FA +T E+   L  +   I+  + K+  + T
Sbjct: 116 EYIAIDFACYGEQVKINWNDFKSLVRDVIFAASTNEVSLILCCVN--ISAANKKIKFITT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  R A A  DI   +    +I +  K + +I       +  V +++S+ +I   ++S +
Sbjct: 174 DRFRYAQAVQDISEDV--TFNISILAKNLRDITNF--DYNGDVILNISDQKISFKLDSTT 229

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +++D  + +   ++P   D EL++    L   +++ S++ +     +KL +  + L 
Sbjct: 230 IESKVVDQLYQDVSRIVPQEFDTELKITKKELNNLLNKASVIINENYNKIKLHIVDNVLT 289

Query: 297 MTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
           ++    ++  A  ++ N  YN   + +  N ++L + I       V +D +         
Sbjct: 290 ISSAREEIANAEIKTNNFSYNGEELKLALNSRFLKDAIS------VYEDNLNILFTKDKL 343

Query: 356 SVFIRGKDKDS 366
            + I+     +
Sbjct: 344 RIVIKSDSNPN 354


>gi|172054952|ref|YP_001806279.1| DNA polymerase III subunit beta [Cyanothece sp. ATCC 51142]
 gi|171701233|gb|ACB54213.1| DNA polymerase III beta subunit [Cyanothece sp. ATCC 51142]
          Length = 391

 Score =  184 bits (467), Expect = 3e-44,   Method: Composition-based stats.
 Identities = 76/398 (19%), Positives = 171/398 (42%), Gaps = 23/398 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           M I+   + +++ L  A ++I    T  +  +V+L+A   +L+++A   +I ++  +  A
Sbjct: 1   MDISCIPTGLIKALSLANKVIPHNPTHLILLNVILKAEPEILKVEAFNGQIAMSWTVRDA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +++  G + V+      ++  L+D   I+   + E     +    ++ F      E  + 
Sbjct: 61  NINTPGEVAVNCKDFLTLLNSLKDEVAITLSSDEEYLYLKSQQGKEAKFAKGDIEEMPWI 120

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDG 178
            +  EE +    + +  L   VE T +A ATE  +  L G+  + + +E+  +   ATDG
Sbjct: 121 DSLTEEEIEQVSIEADDLIQAVEETKYAAATEMTKAILCGVCLNFDTDEENTVEFAATDG 180

Query: 179 HRLAVAEVDIVAQIAKMPS-IIVPRKAVGE----ILRILSSKD--SSVKVSLSESRIHLN 231
           HRLA   V          + +++P + +      + ++ +S++    V +S  ES+I ++
Sbjct: 181 HRLARTRVLYEPSENTPGNKLVMPTETLTLTTYALKQMETSEEIAEMVTISFDESKIQVD 240

Query: 232 IESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                +  R +DG++P+Y+ +I       +       L +A+  +   +  +     +  
Sbjct: 241 FSEGFIRSRKLDGKYPDYEMLINGDDFSLDCTFKRKQLLEALKFIDTFAVGKDSLCFIDF 300

Query: 291 SSDKLCMTVDNPD--MGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             ++   T+ + +   G A +++ V   N     + FN  YL + +  +  D V   E+ 
Sbjct: 301 VPEEKKCTLRSKENTTGSAEDTLEVEDINGQAQSLGFNSNYLKQCLKAMPGDTVT-MEIT 359

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    VF+   ++            F ++MP++I
Sbjct: 360 ETTGDQPGPVFVSPSEE---------YKTFGLVMPIQI 388


>gi|289677550|ref|ZP_06498440.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           FF5]
          Length = 174

 Score =  182 bits (463), Expect = 6e-44,   Method: Composition-based stats.
 Identities = 61/179 (34%), Positives = 97/179 (54%), Gaps = 6/179 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M  T++R  +L+ L     ++ER+ T+PV  +VLL      L +  +  E+E+ G +   
Sbjct: 1   MHFTIQREALLKPLQLVAGVVERRQTLPVLSNVLLVVEGQQLSLTGTDLEVELVGRVQLE 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G ITV A  L DI + L + A I    +    +++ +  G S F L + P ++FP
Sbjct: 61  EPAEPGEITVPARKLMDICKSLSNDALIDIKLDE---SKLIVKAGRSRFTLSTLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           + +E     +F L  S L+ L+ERT FAMA +++RYYLNG+   ++   L+  AVATDG
Sbjct: 118 TVEEGPGSLTFTLVQSKLRRLIERTSFAMAQQDVRYYLNGMLLEVSAGILR--AVATDG 174


>gi|50364817|ref|YP_053242.1| DNA polymerase III, beta chain [Mesoplasma florum L1]
 gi|50363373|gb|AAT75358.1| DNA polymerase III, beta chain [Mesoplasma florum L1]
          Length = 373

 Score =  182 bits (462), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/373 (21%), Positives = 154/373 (41%), Gaps = 21/373 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++++ +S +L  L  A ++IE KN  P    V ++ +   L I +S         +   
Sbjct: 1   MRLSINKSVLLNELTKASKLIELKNVNPALQGVYMEVSFDKLVIVSSNTSTSFKAELNNE 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKL-QDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                ++  G I V    + +++RKL  +   +S F ENE    + I    SN  +    
Sbjct: 61  NSDLIIEQPGRILVKPKFILELLRKLDSEFVTLSTFAENE----LEIITEKSNLKVSILN 116

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             EFP     E      + S   K+ + +T  ++     +  L G+   I   D K+  V
Sbjct: 117 VEEFPLIGFVENGLELSIDSQEFKSTLTQTISSINEWNQKVVLAGMNLKIK--DNKISFV 174

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  R+++ E+ +     +   II+P K + E+  ++ +     K+ + ++     +++
Sbjct: 175 TTDLFRVSLKEIILNEATNQEVDIIIPYKTLIELRNLIENVKE-FKIIIHDTNATFKLDN 233

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSD 293
             +   LIDG +PN  +  P +++ +L +    L + + R  + +       V L +   
Sbjct: 234 DLLQSTLIDGRYPNVHSAFPTTHEIKLELKAKTLLKVLSRFELTNDQNITSVVNLEIQQS 293

Query: 294 KLCMTVDNPDMGKAIESM-NVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
            + +     +  K  E      Y     ++I FN KYL+E I +       D  +    +
Sbjct: 294 GIILKTTIAETVKYEEKFTEYKYEGSSNLNINFNTKYLIEAIRSFD-----DQLIHLTFN 348

Query: 352 SSNSSVFIRGKDK 364
           S N  V I G  K
Sbjct: 349 SQNKPVLITGAQK 361


>gi|203287880|ref|YP_002222895.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1]
 gi|201085100|gb|ACH94674.1| DNA polymerase III, subunit beta [Borrelia recurrentis A1]
          Length = 386

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/399 (20%), Positives = 172/399 (43%), Gaps = 36/399 (9%)

Query: 2   KIT-VERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           K    +   I + +  A  II  +N   +   +LL+     L IKA+   I     IP  
Sbjct: 4   KFILCDTEQISDEIDKAKSIILNRNINDIWSAILLEIKSSNLTIKATDRNIFFESTIPIV 63

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISF---FKENELGTEVNISHGDSNFYLQSFPESE 117
                ++ ++A  L D V+ L    ++       EN+L       + + N+      E  
Sbjct: 64  STDNFNVLINASNLADAVKALNLYDELKMKFKEDENKLDIIGESDNNNENYINDHLSEPT 123

Query: 118 F---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           F             +E Y ++FEL    LK ++ +  F+ + +E +  LNGI+F   + +
Sbjct: 124 FSTEEIENYNYDINDEVYNFAFELNQKDLKRIINKVAFSASHDESKNALNGIYF-TKDSN 182

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L  V+T+ +R+++ + D++    +  + IVP K    +L+ + + +  +K  +S+ + 
Sbjct: 183 SVLTLVSTNSYRMSIYKTDLI--FEEDVNFIVPVKMFN-LLKQMITGEGIIKFKVSDKKF 239

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
           ++   +  ++  LI G +P+Y+++IP        ++    +  + RV+  +  R + V L
Sbjct: 240 YVEFNNYKIACSLISGNYPDYESIIPNEYTNRALIDVFMFKDRLSRVNSYTDKRSKKVIL 299

Query: 289 SLSSDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           + S ++L +  ++P  G+  E      N  Y      +  N  Y+ E +    + ++   
Sbjct: 300 NFSVNQLKLMAEDPITGRKGEFFMQGSNYDYAGTEEMLAINSVYITEAMGVFDTPKL--- 356

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           E+ F                  K N+++K +  +++MP+
Sbjct: 357 EIKFS------------SGGLLKLNEEDKCDFIHLIMPL 383


>gi|193216432|ref|YP_001999674.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1]
 gi|193001755|gb|ACF06970.1| DNA polymerase III, beta subunit [Mycoplasma arthritidis 158L3-1]
          Length = 365

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 78/344 (22%), Positives = 150/344 (43%), Gaps = 18/344 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I + +  + E +    + +++   IPV   +L++A D +L I AS  EI I   IP+S
Sbjct: 1   MEIKINKWLLDEAIERVAKAVDQNPFIPVMKGILVEAQDSMLTIIASNGEISIKHVIPSS 60

Query: 61  VD----VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
           VD      G I V   LL +IV+KL     +        G  + ++     + L  +  S
Sbjct: 61  VDMQILSPGIILVELSLLRNIVKKLDGDISLKSE-----GNLLTVTTEFDRYSLNLYDTS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           E+P      Y  + ++    LK++ +   FA +  E    L  +   I+  D KL  VAT
Sbjct: 116 EYPEIDFAVYGETLKIKWDELKSITKNVSFAASNNEANLVLCCVN--ISAHDGKLKFVAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           + +R A    +I +      ++ +  K + ++         SV +++SE +I   ++S  
Sbjct: 174 NKYRYAEETKEIDSDA--NFNVSIQAKNLKDLTAF--DFKDSVLLNISEHKIAFEVDSTI 229

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  ++++  + +   ++P      L++    L   + + S++ S     +KLS+    L 
Sbjct: 230 IQSKVVNQPYQDVSRIVPREFATCLKIEKRELNNLLSKASVIISETNNKIKLSIVDGILM 289

Query: 297 MTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISS 338
           +     ++  A E +  N  Y+   + +  N KYL E I     
Sbjct: 290 IASTRDEIANA-EIITKNFSYDGDELKLALNSKYLREAIAVFEG 332


>gi|218848051|ref|YP_002454851.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
 gi|218546182|gb|ACK98575.1| DNA polymerase III, beta subunit [Bacillus cereus G9842]
          Length = 379

 Score =  181 bits (461), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 81/401 (20%), Positives = 174/401 (43%), Gaps = 39/401 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M+ T+ + ++L  L    +   R  T+P+ C + L+A    L + AS  E  I   I   
Sbjct: 1   MEFTINKQELLNNLVKVGKYSARSTTLPILCGIYLKATSNELLLVASNKEDTIVSTISET 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              ++   G + V    + DIV+KL D   +SF  +N     ++IS G +N+ L +    
Sbjct: 61  NNFNIVQEGEVVVP-KTITDIVKKLPDDT-VSFTLDN--NNSLHISSGKTNYSLNTLSAD 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P    +   +   ++   L+  VE TH+  A    +  L GI   I+  + ++   AT
Sbjct: 117 DYPDFTTKTLKFLVTISLKKLQRSVEATHYCAAENHSKPQLKGI--EISITNKEIAFAAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           D + L+ + + I            S IVP K + + +++   +   +++    +   L  
Sbjct: 175 DANTLSRSTIPITTDNNIEEKLLYSCIVPSKWLYDAIKMFEEE--EIELGFEGNSAILRS 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRV--NCTNLRQAVDRVSIMSSVRI----QAV 286
           + L +  ++I+G++P+    +      +  +  +   L  ++++V+++ S+        +
Sbjct: 233 KDLHIKTQIIEGKYPDVVKFMEFEKKVKTTISTDRLQLINSLEQVNVICSMNNPKSAALL 292

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDD 344
           KL L+S +  ++ +N  +G  I    +  +    P+ I F+  Y+L  + ++      DD
Sbjct: 293 KLELNSKEFSLSNNNKSLGDVIVKNPIEIDGETIPISIGFSIDYMLRHLKSMQ-----DD 347

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V     +  S +  R  + +             +++P+RI
Sbjct: 348 VVKIGFIAEQSPLIFRNMNTEDFK----------LMLPIRI 378


>gi|71899734|ref|ZP_00681886.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
 gi|71730529|gb|EAO32608.1| DNA-directed DNA polymerase [Xylella fastidiosa Ann-1]
          Length = 218

 Score =  181 bits (460), Expect = 1e-43,   Method: Composition-based stats.
 Identities = 74/206 (35%), Positives = 122/206 (59%), Gaps = 2/206 (0%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
           +LK L+ERT FAMA +++RYYLNG+   +   D KL  VATDGHRLA+ E ++       
Sbjct: 4   LLKELIERTAFAMAQQDVRYYLNGLLLDLR--DTKLRCVATDGHRLALCETELEQAKDLK 61

Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
             II+PRK V E+ R+L   D  +++ ++ + I +    ++ + +LIDG FP+Y+ VIP 
Sbjct: 62  RQIILPRKGVMELQRLLEGSDRQIELEIARNHIRMKSFDVTFTSKLIDGSFPDYEGVIPI 121

Query: 256 SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
             D+E++V    LR A+ R +I+S+ + + V++ +S  +L +   NP+  +A E +    
Sbjct: 122 GADREVKVAREVLRDALQRAAILSNEKYRGVRIEVSPGQLKINAHNPEQEEAQEEIEAQT 181

Query: 316 NECPMDICFNYKYLLEIIDNISSDEV 341
               + I FN  YLL+ + ++  D V
Sbjct: 182 IVDGLAIGFNVNYLLDALSSLRGDFV 207


>gi|289677551|ref|ZP_06498441.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. syringae
           FF5]
          Length = 186

 Score =  181 bits (459), Expect = 2e-43,   Method: Composition-based stats.
 Identities = 60/200 (30%), Positives = 113/200 (56%), Gaps = 14/200 (7%)

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       + + +L+DG+
Sbjct: 1   MSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGK 60

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++L L+S +L +  +NP+  
Sbjct: 61  FPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQE 120

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
           +A E ++V YN   ++I FN  YLL+++  +++     ++V   L  SNSS  ++  D D
Sbjct: 121 EAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVRLILSDSNSSALVQESDND 175

Query: 366 SKNNKDNKVNAFYVLMPMRI 385
                    ++ YV+MPMR+
Sbjct: 176 ---------DSAYVVMPMRL 186


>gi|226321069|ref|ZP_03796611.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805]
 gi|226233479|gb|EEH32218.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 29805]
          Length = 385

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 173/398 (43%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I  + +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIASE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   +L   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301

Query: 292 SDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|218249720|ref|YP_002374949.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7]
 gi|218164908|gb|ACK74969.1| DNA polymerase III, beta subunit [Borrelia burgdorferi ZS7]
          Length = 385

 Score =  180 bits (456), Expect = 4e-43,   Method: Composition-based stats.
 Identities = 83/399 (20%), Positives = 171/399 (42%), Gaps = 37/399 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---SHGDSNFYLQSFPESEF- 118
               + ++A   YD V+      +I     NE  +++ I    +     Y     E  F 
Sbjct: 67  TDFKVLINASNFYDAVKAFNFYKKIKIVF-NENNSKLEIMGELNDKKEEYEDHLKEPTFS 125

Query: 119 --------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
                        E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED K
Sbjct: 126 YEEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSK 184

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++
Sbjct: 185 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYV 241

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ 
Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTF 300

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S  +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     +
Sbjct: 301 SELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----I 355

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +S N            K ++    N  +++MPM +
Sbjct: 356 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|194097591|ref|YP_002000627.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
 gi|193932881|gb|ACF28705.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
          Length = 207

 Score =  180 bits (456), Expect = 5e-43,   Method: Composition-based stats.
 Identities = 66/202 (32%), Positives = 107/202 (52%), Gaps = 7/202 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +  ER  +L+ L     I+ER++T+P+  +VL++   G  ++ A+  EI+I  A P    
Sbjct: 4   LQAERDSLLKPLQAVTGIVERRHTLPILSNVLIEGRGGQTKLLATDLEIQIDTAGPEGGA 63

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
               IT +A    DI+R L  GA +S   ++     + +  G S F LQ+ P ++FP   
Sbjct: 64  GDFRITTNAKKFQDILRALPAGALVSLDWDD---NRLTLKAGKSRFALQTLPAADFPMMN 120

Query: 123 EEEYV-YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
             E +  +F L     K ++ +  ++MA ++IRYYLNG+   +    L+L  VATDGHRL
Sbjct: 121 VGEDISATFSLGQERFKTMLSQVQYSMAVQDIRYYLNGLLMQVEGSQLRL--VATDGHRL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRK 203
             A   I A + +   +I+PRK
Sbjct: 179 DYAACAIDADLPR-AEVILPRK 199


>gi|15594783|ref|NP_212572.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31]
 gi|195942017|ref|ZP_03087399.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi 80a]
 gi|216264913|ref|ZP_03436905.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a]
 gi|223888830|ref|ZP_03623421.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b]
 gi|2688357|gb|AAB91514.1| DNA polymerase III, subunit beta (dnaN) [Borrelia burgdorferi B31]
 gi|215981386|gb|EEC22193.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 156a]
 gi|223885646|gb|EEF56745.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 64b]
          Length = 385

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   +L   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301

Query: 292 SDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|111115265|ref|YP_709883.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo]
 gi|216263342|ref|ZP_03435337.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1]
 gi|110890539|gb|ABH01707.1| DNA polymerase III, subunit beta [Borrelia afzelii PKo]
 gi|215980186|gb|EEC21007.1| DNA polymerase III, beta subunit [Borrelia afzelii ACA-1]
          Length = 386

 Score =  179 bits (455), Expect = 6e-43,   Method: Composition-based stats.
 Identities = 82/400 (20%), Positives = 173/400 (43%), Gaps = 38/400 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              + + I   +  A  II  +N   +   +L++  +  L IK++   I     IP   +
Sbjct: 7   FICDTNQITSEIEKAKGIILNRNMNDIWSALLIEVKNSNLIIKSTDRNIFFESTIPIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI---------SHGDSNFYLQSF 113
               + ++A   YD V+      +I     NE  +++ I            + +    +F
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIK-IAFNENNSKLEIMGESKDEKEEEYEDHLKEPTF 125

Query: 114 PESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
              E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED 
Sbjct: 126 SYEEIENYNYDMVNEDYTFEIEIKQKSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDS 184

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           KL  V+T+GHR+++ + ++   + +  + IVP K +   L+ L S +  VK+  S+ + +
Sbjct: 185 KLLFVSTNGHRMSICKTEVT--VEEDVNFIVPVK-IFNFLKHLMSGEGLVKIKSSDKKFY 241

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  ++  ++  LI G +P+Y+++IP     +  V+ + L+  + RV++      + V L+
Sbjct: 242 VEFDNYKIACSLISGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVDKSRKLV-LT 300

Query: 290 LSSDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            S  +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     
Sbjct: 301 FSELQLKLLGEDLITGRKGEFFIKNSNYLYDGSDEVMAINISYFIEAISVFETSK----- 355

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +S N            K ++   +N  +++MPM +
Sbjct: 356 IEIQFNSGN----------VLKLSEPEDLNFMHLIMPMSL 385


>gi|237738323|ref|ZP_04568804.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817]
 gi|229420203|gb|EEO35250.1| DNA polymerase subunit III [Fusobacterium mortiferum ATCC 9817]
          Length = 363

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 76/389 (19%), Positives = 159/389 (40%), Gaps = 32/389 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R  ++ +L     I++     P+   + + A D  +    +  EIE    I A 
Sbjct: 1   MKFSIIREQLISVLSEYTNILKENPIKPIVSGLKIIAKDNQVIFIGTNLEIEHIRKIEAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G + +   LL + ++ L++   I F  EN       ++   + F +       +P 
Sbjct: 61  VEREGEVVLKPFLLLEYIKLLEEDK-IEFSSENGF-----VAVHQAEFSV--LEGGSYPV 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E E      +  + L  L++R  FA +       +N +     +E+L L   +TD +R
Sbjct: 113 IPELESQSLLTIEGNRLVQLLDRAKFAASQSADNIQINCVRAVFKKEELNL--ASTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L      +     K  S  +P + V  + ++L   +  + +  S   + +  E+   S +
Sbjct: 171 LLFLREKVECNENKELS--IPMETVNILCKLLKDYNKEIHLGYSGETLVITWENSYFSSK 228

Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSSDKLC 296
            I  ++P+++ ++  S  +K +  N   LR A+ RV  ++   +        + +   + 
Sbjct: 229 TIGLQYPDFKTILRISAFEKRMEFNRDELRSAIKRVITVAKTSLDAKFGAIFNFTGKMMV 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   +    K  + +N+           N K+L E IDNIS      + V+   ++++S 
Sbjct: 289 INAFSG-RAKINQKVNMLKEGEDFKASLNCKFLAEYIDNIS------NNVIISGNNASSM 341

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             IR +  +         +  Y+LMP+ +
Sbjct: 342 FEIREEGNE---------DYIYILMPLAL 361


>gi|226321747|ref|ZP_03797273.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26]
 gi|461953|sp|P33761|DPO3B_BORBU RecName: Full=DNA polymerase III subunit beta
 gi|454040|gb|AAA58942.1| beta subunit of DNA polymerase III [Borrelia burgdorferi]
 gi|226232936|gb|EEH31689.1| DNA polymerase III, beta subunit [Borrelia burgdorferi Bol26]
          Length = 385

 Score =  179 bits (454), Expect = 7e-43,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   +L   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFNFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301

Query: 292 SDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|312147910|gb|ADQ30569.1| DNA polymerase III, beta subunit [Borrelia burgdorferi JD1]
          Length = 385

 Score =  179 bits (454), Expect = 8e-43,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   +L   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301

Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|9966390|gb|AAG10236.1|AF201699_1 DNA polymerase III beta subunit [Sinorhizobium meliloti]
          Length = 164

 Score =  178 bits (453), Expect = 9e-43,   Method: Composition-based stats.
 Identities = 79/178 (44%), Positives = 110/178 (61%), Gaps = 14/178 (7%)

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267
           + ++L S D  V V +S+++I L I S+ M+ +LIDG FP+YQ VIP SNDKELRV+C +
Sbjct: 1   LQKLLDSPDVVVTVEVSDAKIRLTIGSIVMTSKLIDGTFPDYQRVIPASNDKELRVDCQS 60

Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327
             QAVDRVS +SS R +AVKL+L+  ++ +TV+NPD G A E + V Y   P++I FN K
Sbjct: 61  FSQAVDRVSTISSERGRAVKLALADGQMTLTVNNPDSGSATEELPVGYESDPLEIGFNAK 120

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           YLL+I   ++       E VF L    S   +R    +         +A YVLMPMR+
Sbjct: 121 YLLDITGQLTG-----GEAVFLLADPGSPTLVRDLAAE---------DALYVLMPMRV 164


>gi|312599863|gb|ADQ91857.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599891|gb|ADQ91871.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599893|gb|ADQ91872.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599895|gb|ADQ91873.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599897|gb|ADQ91874.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599901|gb|ADQ91876.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599903|gb|ADQ91877.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599929|gb|ADQ91890.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599935|gb|ADQ91893.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599937|gb|ADQ91894.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599939|gb|ADQ91895.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599941|gb|ADQ91896.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599943|gb|ADQ91897.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599945|gb|ADQ91898.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599947|gb|ADQ91899.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599949|gb|ADQ91900.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599951|gb|ADQ91901.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599953|gb|ADQ91902.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599955|gb|ADQ91903.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599957|gb|ADQ91904.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599959|gb|ADQ91905.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599961|gb|ADQ91906.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599963|gb|ADQ91907.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599965|gb|ADQ91908.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599967|gb|ADQ91909.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599969|gb|ADQ91910.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599971|gb|ADQ91911.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599973|gb|ADQ91912.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599975|gb|ADQ91913.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599977|gb|ADQ91914.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599979|gb|ADQ91915.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599981|gb|ADQ91916.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599983|gb|ADQ91917.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599985|gb|ADQ91918.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599987|gb|ADQ91919.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599989|gb|ADQ91920.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
 gi|312599991|gb|ADQ91921.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Muenchen]
          Length = 184

 Score =  178 bits (453), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 7/190 (3%)

Query: 41  LLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV 99
            L +  +  E+E+   +  S     G+ TV A   +DI R L +GA+I+   E   G  +
Sbjct: 1   TLSLTGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRM 57

Query: 100 NISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159
            +  G S F L + P ++FP+  + +    F L  + +K L+E T F+MA +++RYYLNG
Sbjct: 58  LVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNG 117

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219
           + F     +L+   VATDGHRLAV  + + A +    S+IVPRK V E++R+L   ++ +
Sbjct: 118 MLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPL 174

Query: 220 KVSLSESRIH 229
           +V +  + I 
Sbjct: 175 RVQIGSNNIR 184


>gi|225548655|ref|ZP_03769702.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a]
 gi|225370685|gb|EEH00121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 94a]
          Length = 385

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 84/398 (21%), Positives = 172/398 (43%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   YL   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDYLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LAFS 301

Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|228989125|ref|ZP_04149143.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
 gi|228770552|gb|EEM19099.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           tochigiensis BGSC 4Y1]
          Length = 379

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 76/401 (18%), Positives = 171/401 (42%), Gaps = 39/401 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M+ T+ + ++L  L    +   R   +P+ C + L+A    L++ AS  E  I   I   
Sbjct: 1   MEFTINKQELLNNLVKVGKYSARSTNLPILCGIYLKATANELQLVASNKEDTIVSTISEI 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              +V   G + V    + DIV+KL +   +SF  +N     ++IS G + + L +   +
Sbjct: 61  QNFNVVQEGEVVVP-KTITDIVKKLPNDT-VSFTLDN--NNSLHISSGKTKYSLNTLSAN 116

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P    +   +   ++   L+  VE T++  A    +  L GI   I+  + ++   AT
Sbjct: 117 DYPDFTTKTLKFLVSISLKKLQRSVEATYYCAAENHSKPQLKGI--EISITNKEIAFAAT 174

Query: 177 DGHRLAVAEVDIVAQIAKMP----SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
           D + L+ + + I            S IVP + + + +++   +   +++    +   L  
Sbjct: 175 DANTLSRSTIPITTDSNTEEKLLYSCIVPSRWLYDAIKMFEEE--EIELGFEGNSAILCS 232

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIMSSVRI----QAV 286
           + L +  ++I+G++P+    +         +  +   L  ++++V+++ S+        +
Sbjct: 233 KDLHIKTQIIEGKYPDVVKFMEFEKTVKTTISTDRLQLINSLEQVNVICSMNNPKSAALL 292

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC--PMDICFNYKYLLEIIDNISSDEVVDD 344
            L L+S +  ++ +N  +G  I    +       P+ I F+  Y+L  + ++ +D     
Sbjct: 293 NLELNSKEFSLSNNNKSLGDVIVKNPIEIEGESIPISIGFSIDYMLRHLKSMQADV---- 348

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            V     +  S +  R  D +             +++P+RI
Sbjct: 349 -VKIGFIAEQSPLIFRNMDSEDFK----------LMLPIRI 378


>gi|221218172|ref|ZP_03589638.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a]
 gi|224532522|ref|ZP_03673147.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23]
 gi|224533532|ref|ZP_03674121.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a]
 gi|225549474|ref|ZP_03770440.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a]
 gi|221192120|gb|EEE18341.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 72a]
 gi|224512594|gb|EEF82970.1| DNA polymerase III, beta subunit [Borrelia burgdorferi WI91-23]
 gi|224513205|gb|EEF83567.1| DNA polymerase III, beta subunit [Borrelia burgdorferi CA-11.2a]
 gi|225369751|gb|EEG99198.1| DNA polymerase III, beta subunit [Borrelia burgdorferi 118a]
          Length = 385

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 83/398 (20%), Positives = 172/398 (43%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   +L   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED KL
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSKL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LAFS 301

Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|312149228|gb|ADQ29299.1| DNA polymerase III, beta subunit [Borrelia burgdorferi N40]
          Length = 385

 Score =  178 bits (452), Expect = 1e-42,   Method: Composition-based stats.
 Identities = 82/398 (20%), Positives = 171/398 (42%), Gaps = 35/398 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I+  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQIMNEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKEN-----ELGTEVNISHGDSNFYL--QSFPE 115
               + ++A   YD V+      +I           E+  E+N    +   +L   +F  
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGELNDEKEEYEDHLKEPTFSY 126

Query: 116 SEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E          E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED  L
Sbjct: 127 EEIENYNYDMVNEDYTFGIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSTL 185

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++ 
Sbjct: 186 LLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYVE 242

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ S
Sbjct: 243 FDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTFS 301

Query: 292 SDKLCMTVDNPDMGKAIESM----NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
             +L +  ++   G+  E      N  Y+     +  N  Y +E I    + +     + 
Sbjct: 302 ELQLKLLGEDLITGRKGEFFIKDSNYLYDGADEVMAINISYFVEAISVFETSK-----IE 356

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + +S N            K ++    N  +++MPM +
Sbjct: 357 IQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|312599849|gb|ADQ91850.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599851|gb|ADQ91851.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599853|gb|ADQ91852.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599855|gb|ADQ91853.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599857|gb|ADQ91854.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599859|gb|ADQ91855.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599861|gb|ADQ91856.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599865|gb|ADQ91858.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599867|gb|ADQ91859.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599869|gb|ADQ91860.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599871|gb|ADQ91861.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599873|gb|ADQ91862.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599875|gb|ADQ91863.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599877|gb|ADQ91864.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599879|gb|ADQ91865.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599881|gb|ADQ91866.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599883|gb|ADQ91867.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599885|gb|ADQ91868.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599887|gb|ADQ91869.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599889|gb|ADQ91870.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Typhimurium]
 gi|312599899|gb|ADQ91875.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599905|gb|ADQ91878.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Saintpaul]
 gi|312599907|gb|ADQ91879.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg str. SARA30]
 gi|312599909|gb|ADQ91880.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599911|gb|ADQ91881.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599913|gb|ADQ91882.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599915|gb|ADQ91883.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599917|gb|ADQ91884.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599919|gb|ADQ91885.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599921|gb|ADQ91886.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599923|gb|ADQ91887.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599925|gb|ADQ91888.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599927|gb|ADQ91889.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Heidelberg]
 gi|312599931|gb|ADQ91891.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
 gi|312599933|gb|ADQ91892.1| DNA polymerase III beta subunit [Salmonella enterica subsp.
           enterica serovar Paratyphi B]
          Length = 184

 Score =  178 bits (451), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 64/190 (33%), Positives = 105/190 (55%), Gaps = 7/190 (3%)

Query: 41  LLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEV 99
            L +  +  E+E+   +  S     G+ TV A   +DI R L +GA+I+   E   G  +
Sbjct: 1   TLSLTGTDLEMEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRM 57

Query: 100 NISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNG 159
            +  G S F L + P ++FP+  + +    F L  + +K L+E T F+MA +++RYYLNG
Sbjct: 58  LVRSGRSRFSLSTLPAADFPNLDDWQSEVEFTLPQATMKRLIESTQFSMAHQDVRYYLNG 117

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219
           + F     +L+   VATDGHRLAV  + + A +    S+IVPRK V E++R+L   ++ +
Sbjct: 118 MLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPL 174

Query: 220 KVSLSESRIH 229
           +V +  + I 
Sbjct: 175 RVQIGSNNIR 184


>gi|219685163|ref|ZP_03539983.1| DNA polymerase III, beta subunit [Borrelia garinii Far04]
 gi|219673259|gb|EED30278.1| DNA polymerase III, beta subunit [Borrelia garinii Far04]
          Length = 386

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 85/399 (21%), Positives = 171/399 (42%), Gaps = 36/399 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I   +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQITSEIEKAKGIILNRNMNDIWSALLIEVKRSNLIIKSTDRNIFFESTIAIISE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN-------FYLQSFP 114
               + ++A   YD V+      +I   F EN    E+     D             +F 
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGESQDKKEEKCEDHLKEPTFS 126

Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
             E          E+Y +  EL     K ++ R  F+   +E +  LNG+FF    ED K
Sbjct: 127 YEEIENYNYDMINEDYTFEIELKQKSFKKIINRIAFSAHFDESKNVLNGVFF-TKGEDFK 185

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++
Sbjct: 186 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYV 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++  ++  LI+G +P+Y+++IP   + +  V+ + L+  + RV++    + + + L+ 
Sbjct: 243 EFDNYKIACSLINGNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYV-DKSKKLILTF 301

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S  +L +  ++   G+  E    + N  Y      +  N  Y +E I    + +     +
Sbjct: 302 SELQLKLLGEDLITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAISVFETSK-----I 356

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +S N            K ++    N  +++MPM +
Sbjct: 357 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 385


>gi|224534779|ref|ZP_03675351.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S]
 gi|224514027|gb|EEF84349.1| DNA polymerase III, beta subunit [Borrelia spielmanii A14S]
          Length = 385

 Score =  177 bits (450), Expect = 2e-42,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 172/399 (43%), Gaps = 37/399 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              + + I   +  A  II  +N   +   +L++     L I+++   I     IP   +
Sbjct: 7   FICDTNQITSEIEKAKGIILNRNMNDIWSALLIEVEKSNLIIRSTDRNIFFESLIPIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN--------FYLQSFP 114
               + ++A   YD V+      +I     NE  +++ I     N            +F 
Sbjct: 67  TDFKVLINASNFYDAVKAFSFCKKIKVVF-NENNSKLEIMEESKNEKEEYEDHLKEPTFS 125

Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
             E          E+Y +  E+  +  K ++ R  F+   +E +  LNG++F   +ED +
Sbjct: 126 YEEIENYNYDMVNEDYTFEIEVKQTSFKKIINRIAFSAHLDESKNVLNGVYF-TKDEDSQ 184

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  V+T+GHR+++   +++  + +  + IVP K +   L+ L S +  VK+  S  + ++
Sbjct: 185 LLLVSTNGHRMSICRTEVM--VEENVNFIVPVK-IFNFLKHLMSGEGMVKIKSSNKKFYV 241

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++  ++  LI+G +P+Y+++IP     +  V+ + L+  + RV++      + V L+ 
Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVDKSRKLV-LNF 300

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S  +L +  ++   G+  E    + N  Y+     +  N  Y +E I    + +     +
Sbjct: 301 SESQLKLLGEDLITGRKGEFFIKNPNYLYDGSDEVMAINISYFIEAISVFEASK-----I 355

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +S N            K ++    +  +++MPM +
Sbjct: 356 EIQFNSGN----------VLKLSEPENFDFTHLIMPMSL 384


>gi|225552236|ref|ZP_03773176.1| DNA polymerase III, beta subunit [Borrelia sp. SV1]
 gi|225371234|gb|EEH00664.1| DNA polymerase III, beta subunit [Borrelia sp. SV1]
          Length = 385

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 80/399 (20%), Positives = 174/399 (43%), Gaps = 37/399 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + ++  +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQVINEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTISIVSE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG--------DSNFYLQSFP 114
               + ++A   YD V+      +I     N+  +++ I           + +    +F 
Sbjct: 67  TDFKVLINASNFYDAVKAFGFYKKIKIVL-NKNNSKLEIMGELKDEKEEYEDHLKEPTFS 125

Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
             E         +E+Y +  E+     K ++ R  F+   +E +  LNG++F   +ED K
Sbjct: 126 YEEIENYNYDMVDEDYTFEIEIKQKSFKKVINRIAFSAHLDESKNVLNGVYFS-KDEDSK 184

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++
Sbjct: 185 LLLVSTNGHRMSICKTEVM--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKFSDKKFYV 241

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++  ++  LI+G +P+Y+++IP     +  V+   L+  + RV++      + V L+ 
Sbjct: 242 EFDNYKIACSLINGNYPDYKSIIPKEQKNKSLVSLGILKDRLARVNLYVDKSRKLV-LTF 300

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S  +L +  ++   G+  E      N  Y+     +  N  Y +E I+   + +     +
Sbjct: 301 SELQLKLLGEDLITGRKGEFFIKDPNYLYDGADEVMAINISYFVEAINVFETSK-----I 355

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +S N            K ++    N  +++MPM +
Sbjct: 356 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 384


>gi|257469639|ref|ZP_05633731.1| DNA polymerase III, beta chain [Fusobacterium ulcerans ATCC 49185]
 gi|317063875|ref|ZP_07928360.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
 gi|313689551|gb|EFS26386.1| DNA polymerase subunit III [Fusobacterium ulcerans ATCC 49185]
          Length = 363

 Score =  177 bits (449), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 154/389 (39%), Gaps = 32/389 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R +++ +L     I++     P+   + ++A + L+    +  E++    + A 
Sbjct: 1   MKFSIKREELISILSEYTNILKDNPIKPIVSGLQIKAENNLITFVGTNLEVDHIRKVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +   LL + ++ L D   I F   N       I+   + F +    E  FP 
Sbjct: 61  VKEEGSLVLKPFLLLEYIKLL-DEEYIEFILNNGF-----ITVHQAEFSI--LEEGTFPV 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +    +    L  L+E++ FA +       +N +       ++ L  V+TD +R
Sbjct: 113 ITETTPIKLLAITGGELVKLLEKSKFAASLTNDNIQINCVRVIFKLNEINL--VSTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   + D    + K  S  +P   +  I ++L   +  V +  S   + L  E+   S +
Sbjct: 171 LLYMKADKNCHVEKEIS--IPMDTINVICKLLKDSEKEVTIGFSGENVILTWENAYFSSK 228

Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSSDKLC 296
            I   FP+++ ++  +   K +  N   L+ A+ RV  ++   +              L 
Sbjct: 229 TIALPFPDFKGILANNSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKTLL 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   +    K  + +N+           N K+L E IDNIS + V+          S SS
Sbjct: 289 INAFSG-KAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVI--------KGSGSS 339

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         K +  Y+LMP+ +
Sbjct: 340 SMFEITET-------GKEDYRYILMPLAL 361


>gi|26553454|ref|NP_757388.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2]
 gi|26453460|dbj|BAC43792.1| DNA polymerase III subunit beta [Mycoplasma penetrans HF-2]
          Length = 378

 Score =  176 bits (448), Expect = 3e-42,   Method: Composition-based stats.
 Identities = 86/392 (21%), Positives = 176/392 (44%), Gaps = 29/392 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MKI V ++ ++  L     I E   + PV    L++ ND  ++   S   I     +   
Sbjct: 7   MKIIVSKTKLINALRLCNSISENIFSSPVFLGTLIEVNDNEIKFTTSNGIISTHSIVAKS 66

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
             A++   G I +     + I+ KL++   I+  K +    +V  S  DSN  +    E 
Sbjct: 67  EDANILEKGRILIKTKPFFAIISKLKN-EMITLEKVDNSVIKVKTSTFDSNINI--MDEE 123

Query: 117 EFPSTKEEEYV-YSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAV 174
           ++P+            ++  V K  + +  +A+    E    ++GI F+    +  L  +
Sbjct: 124 QYPNINFSYNDWNQLSISPIVFKKSISKVKYAVNNNKEKINIMSGICFNSISSEKTLEII 183

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATDG++LA  + +   Q  +    IV   ++ E+L  +   D+++++ L ES I   + +
Sbjct: 184 ATDGYKLAHYKFESTPQDFR----IVLDVSLIELLLEIIDFDTNIEIFLFESNIIFKVSN 239

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLSSD 293
             ++ ++I+G++PN   +I    + ++ ++   L +A++R ++I SS +   VKL+ SS+
Sbjct: 240 TIIASKIIEGDYPNVSRIIATPKENKVNISKKTLVEALERGLAISSSEKKSIVKLNFSSE 299

Query: 294 KLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            L ++  + D+G + E+++       P  I  N  +LL ++         +D +      
Sbjct: 300 VLEVSFSSSDLGNSKETVSCKGKVNEPTPISLNNHFLLSLLKTFD-----NDNITVEFSD 354

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S   V +R +            N   +L+P+R
Sbjct: 355 SFKPVLLRDE---------KDPNFLQILVPIR 377


>gi|253734730|ref|ZP_04868895.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp.
           aureus TCH130]
 gi|253727295|gb|EES96024.1| possible DNA-directed DNA polymerase [Staphylococcus aureus subsp.
           aureus TCH130]
          Length = 161

 Score =  176 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 53/175 (30%), Positives = 96/175 (54%), Gaps = 14/175 (8%)

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQ 270
           +L   D+ ++V +  + I  ++     + +L+DG FP+Y+ V+P + DK L   C  L+Q
Sbjct: 1   MLDGGDNPLRVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDLLKQ 60

Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLL 330
           A  R +I+S+ + + V+L +S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L
Sbjct: 61  AFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVTYSGAEMEIGFNVSYVL 120

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++++ +       + V   L  S SSV I               +A YV+MPMR+
Sbjct: 121 DVLNALKC-----ENVRMMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 161


>gi|256370826|ref|YP_003108650.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM
           10331]
 gi|256007410|gb|ACU52977.1| DNA polymerase III, beta subunit [Acidimicrobium ferrooxidans DSM
           10331]
          Length = 366

 Score =  176 bits (448), Expect = 4e-42,   Method: Composition-based stats.
 Identities = 80/388 (20%), Positives = 169/388 (43%), Gaps = 30/388 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK   ER ++   L  A R +  ++++     V      G LE++    ++ I   + A 
Sbjct: 1   MKFLCERDELASALQAASRALSSRSSL---AGVRWTLRGGELEVEGRESDLAIRSVLGAM 57

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS    A L  D+VR +    Q+    E+     V +  G +   LQ  P  E P 
Sbjct: 58  GTE-GSFQTPASLAVDLVRTMPSD-QVEVVVED---ASVVLRSGRAEVSLQLLPTLELPG 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAVATDGH 179
             E     S  + ++ L   + +   A A ++ R    + + F    + L+L  VATDG 
Sbjct: 113 IGEG-TTPSATVPAAALAQGIRQVAVAAARDDGRDLIYSSMLFSSTNDGLRL--VATDGT 169

Query: 180 RLAVAEV-DIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSM 237
           RLA+ ++ ++    ++   +++P +AV E+ R+++      + V + E      + + ++
Sbjct: 170 RLALRDIANLSVAGSEARDVVIPTRAVRELERLVTGAGVDEIHVGIGERDAVFVVGTTTL 229

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKL 295
           + RL+D  F +Y+ ++  +  K+L ++  +L  A+ R+  M+       +++++++    
Sbjct: 230 ATRLVDEPFRDYRRLVEATYPKKLLLDRLSLVDAMRRLRRMAKEARNSSSIQMNMTPTAC 289

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++V  P +G+  E ++  +N+    I F+   L + +D +  D      +      +N 
Sbjct: 290 ELSVRIPSVGQVHEVLDANFNDAEFTINFDPDMLADGVDGVEGDV-----IRLEFIEANR 344

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +  +   D              Y+LMP+
Sbjct: 345 AACVSSAD---------TREYLYILMPI 363


>gi|134122656|dbj|BAF49632.1| putative DnaN [Microcystis aeruginosa]
          Length = 209

 Score =  176 bits (447), Expect = 5e-42,   Method: Composition-based stats.
 Identities = 54/221 (24%), Positives = 114/221 (51%), Gaps = 20/221 (9%)

Query: 171 LCAVATDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSSKD--SSVKVSLSES 226
           L   ATDGHRLAV +  +      +   ++ +P +A+ E+ R++++K    ++ + + +S
Sbjct: 1   LEFAATDGHRLAVVQTPLEEVESASGGFNVTIPARALRELERMMATKQNIETITLHVDDS 60

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           ++   +    ++ R ++G +P Y  +IP S ++ L ++   L + ++ V+++S  +   V
Sbjct: 61  QVIFEMGEQRLTSRKLEGAYPTYNQLIPKSFERSLVLDRKQLIRCLELVAVLSDQKNNLV 120

Query: 287 KLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           K SL   + +L + V++PD+G A ESM         DI FN KYL++ +  + +++    
Sbjct: 121 KFSLDGENSRLSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND---- 176

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +L++S   V                +   Y++MP++I
Sbjct: 177 -IQMQLNASTQPVIFTP---------LGGLKMTYLVMPVQI 207


>gi|310780294|ref|YP_003968626.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
 gi|309749617|gb|ADO84278.1| DNA polymerase III, beta subunit [Ilyobacter polytropus DSM 2926]
          Length = 363

 Score =  176 bits (446), Expect = 6e-42,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 154/389 (39%), Gaps = 32/389 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V R ++++LL +   +I+  +  PV     L+A +G+     S  E     +IPA 
Sbjct: 1   MKIRVNREELIKLLSNLSVVIKENSIKPVISGTKLEAKNGMAVFTGSNLEFSFISSIPAQ 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G       L+ + ++ L    ++          ++ I    + F +      E+P 
Sbjct: 61  IENEGVTVFKIPLILEYIKLL----EVENLDITVSEGKLLIH--RAEFSI--MDWEEYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            K+ E    FE+ S  + +  E+  F+         +N I      +D +L  ++TD +R
Sbjct: 113 IKQPESENIFEVESQEIISAFEKVKFSAFPTADNLAINCIRM--ACDDNELNMISTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L      +         + +P ++V  I ++L   +      +    + +   +  MS R
Sbjct: 171 LTKYF--LETPCKSKMEVSIPLESVNIICKLLKDSEEKASFGVKNGILTIKKGNSFMSTR 228

Query: 241 LIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSS---VRIQAVKLSLSSDKLC 296
           LI+  FP+Y+ +    S  K + +N  + + ++ +V  ++                ++L 
Sbjct: 229 LIELPFPDYKTIFKNMSYTKNIELNTADFKGSMKKVLTVAKRNIETKNGAIFEFKGNRL- 287

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           ++  +    K ++ ++            N K++ + I NI         ++ +  +S+S 
Sbjct: 288 ISTVSSGSAKTVQKIDTIKEGEDFKASLNVKFVYDFISNIQ------KNILIKATNSSSM 341

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +          +    N  Y+LMP+ +
Sbjct: 342 FIME---------EAGNKNYKYILMPLAL 361


>gi|239927656|ref|ZP_04684609.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
 gi|291435994|ref|ZP_06575384.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
 gi|291338889|gb|EFE65845.1| DNA polymerase III subunit beta [Streptomyces ghanaensis ATCC
           14672]
          Length = 375

 Score =  175 bits (445), Expect = 8e-42,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 145/391 (37%), Gaps = 23/391 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +++    E    A R +      P+   +LL+ +   + +     E      + A 
Sbjct: 1   MKIRIDQKLFAEAAKRAHRRLPNNPLQPLLGGLLLETDGDSVTLSGFDYETSTRATLAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + VS  LL D+   +  G       + E    + ++   + F L +    ++P 
Sbjct: 61  VLETGHVLVSGRLLADVTAAMPTGPVDVVADDQE----LTLAAPGTTFTLPTMDRRDYPE 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIF-FHINEEDLKLCAVATDGH 179
             +            +   +V     +M  +E    L G    HI  +   L   A+D +
Sbjct: 117 LPQAPEAAGTVDGDLLAAAVVHAAQASMPDKEAAGSLEGFRGVHIAADGDHLTVSASDRY 176

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES--RIHLNIESLSM 237
           R+    +           ++VP   +    + L+     V+VS + +     L  ++L++
Sbjct: 177 RIVRHRIPWTPDGETADDLLVPAAHLAATCKQLAG--GPVRVSFTNNITVAALANDTLTV 234

Query: 238 SVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
           + R +   FPN  N  P        LR +   L +AV R ++++    QA++LS   D++
Sbjct: 235 TSRTVATPFPNIDNFFPNPAAASGWLRADAAELLEAVKRAALVNHKEEQAIRLSFDQDQV 294

Query: 296 CMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            +T    +  K    ++    +       +   +L  ++  IS       +V     + N
Sbjct: 295 TVT-GGVEGSKGASRVDAEITDLDGFTAGYRPGFLGSLLAPISG------QVQIWFTTPN 347

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V I+  D + +           V MP+R+
Sbjct: 348 KPVLIQPVDDEGRVI----DTYRAVCMPVRL 374


>gi|224532178|ref|ZP_03672810.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116]
 gi|224511643|gb|EEF82049.1| DNA polymerase III, beta subunit [Borrelia valaisiana VS116]
          Length = 386

 Score =  175 bits (445), Expect = 9e-42,   Method: Composition-based stats.
 Identities = 86/400 (21%), Positives = 173/400 (43%), Gaps = 38/400 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I   +  A  II  +N   +   +L++     L IK++   I     IP   +
Sbjct: 7   FICETNQITSEIEKAKGIILNRNMNDIWSALLIEVKKSNLIIKSTDRNIFFESTIPIISE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNI----SHGDSNFYLQSFPESEF 118
               + ++A   YD V+      +I     NE  +++ I           YL    E  F
Sbjct: 67  TDFKVLINASNFYDAVKAFSLYKKIKIVF-NEDNSKLEIMGELKDEKEEEYLDHLKEPTF 125

Query: 119 ---------PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
                         E+Y +  E+    LK ++ R  F+   +E +  LNG++F   +ED 
Sbjct: 126 SYEEIENYNYDMINEDYTFEIEVKQKSLKKVISRIAFSAHFDESKNVLNGVYF-TKDEDS 184

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIH 229
           KL  V+T+GHR+++ + +++  I +  + IVP K +   L+ L S +  VK+  S+ + +
Sbjct: 185 KLLLVSTNGHRMSICKTEVI--IEEAVNFIVPVK-IFNFLKHLMSGEGVVKIKSSDKKFY 241

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           +  ++  ++  LI G +P+Y+++IP     +  V+ + L+  + RV++      + V L+
Sbjct: 242 VEFDNYKIACSLIIGNYPDYKSIIPKEQKNKSLVSLSILKDRLARVNLYVDKSRKLV-LT 300

Query: 290 LSSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            S  +L +  ++   G+  E    + N  Y+     +  N  Y +E I    + +     
Sbjct: 301 FSELQLKLLGEDLITGRKGEFFIKNPNYVYDGSDEIMAINISYFVEAISVFETSK----- 355

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +  + +S N            K ++    +  +++MPM +
Sbjct: 356 IEIQFNSGN----------VLKLSEPENFDFTHLIMPMSL 385


>gi|307945020|ref|ZP_07660356.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
 gi|307770893|gb|EFO30118.1| DNA polymerase III, beta subunit [Roseibium sp. TrichSKD4]
          Length = 399

 Score =  174 bits (442), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 85/398 (21%), Positives = 166/398 (41%), Gaps = 34/398 (8%)

Query: 2   KITVERSDILELLGHACRIIER-KNTIPVSCH--VLLQANDGLLEIKASGPEIEITGAIP 58
           +I ++R+D L  + +A +I ++ K    +  +  + L +  G +   A+  +   +    
Sbjct: 20  EIIIDRADFLRAVTNAKQIADKPKPKEAIGPNHYLYLCSTGGGISATATDFDTVTSTLCK 79

Query: 59  ASVDVCGSITVSAHLLYD-IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                   + + AH L+  I +       +         TE+ I     +     +   +
Sbjct: 80  GDAPQDFFVALPAHQLFGLIAKADPSRNVVLACAPG--ITELTIGAISVDIETPDWSLCD 137

Query: 118 FPSTKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
            P              F + + VL++   +T  +++TEE+RYYL G++ H    + K  A
Sbjct: 138 MPVVAFQHKMVTAETEFLIPTHVLRDAFRKTLPSVSTEEVRYYLRGVYLH--AYNGKFRA 195

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS----SKDSSVKVSLSESRIH 229
            +TDGHRL + E D+   +  +P II+P K V E++R+LS       S VKV + E+ + 
Sbjct: 196 ASTDGHRLTIFEDDLPPGVTDIPPIIIPTKGVQEVVRMLSRKGIDASSQVKVIVDEAGVF 255

Query: 230 LNIESLS-MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
                   ++V+ IDG FP+YQ +IP      +      +  A+  +  +       V  
Sbjct: 256 FQFGDYELLAVKAIDGTFPDYQRLIPAMPVNFVSFEAQKMEDALKALLSIKPE-FNRVLC 314

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNE-CPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           S     + ++V   +  K+  S+        P+ I FN +++ +++  I           
Sbjct: 315 SFEESGIHLSVSTEEGAKSRTSLKANLEGIDPIQIKFNGQFISDLMKLIEG------RAR 368

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D +N  V ++    D            Y++MP++I
Sbjct: 369 VCIDHNNQPVVLQDVSDD---------RMTYLVMPLKI 397


>gi|219684428|ref|ZP_03539372.1| DNA polymerase III, beta subunit [Borrelia garinii PBr]
 gi|219672417|gb|EED29470.1| DNA polymerase III, beta subunit [Borrelia garinii PBr]
          Length = 386

 Score =  174 bits (441), Expect = 2e-41,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 170/399 (42%), Gaps = 36/399 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I   +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQITSEIEKAKGIILNRNMNDIWSALLIEIKRSNLIIKSTDRNIFFESTISIISE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN-------FYLQSFP 114
               + ++A   YD V+      +I   F EN    E+     D             +F 
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGESQDEKEEKCEDHLKEPTFS 126

Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
             E          E+Y +  EL     K ++ R  F+   +E +  LNG+FF    ED +
Sbjct: 127 YEEIENYNYDMVNEDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGVFF-TKGEDSQ 185

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++
Sbjct: 186 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYV 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++  ++  LI G +P+Y+++IP   + +  V+ + L+  + RV++    + + + L+ 
Sbjct: 243 EFDNYKIACSLISGNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYV-DKSKKLILTF 301

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S  +L +  ++   G+  E    + N  Y      +  N  Y +E I    + +     +
Sbjct: 302 SELQLKLLGEDLITGRKGEFFIKNPNYLYEGSDEVMAINISYFIEAISVFETSK-----I 356

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +S N            K ++    N  +++MPM +
Sbjct: 357 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 385


>gi|296327521|ref|ZP_06870067.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
 gi|296155347|gb|EFG96118.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. nucleatum ATCC 23726]
          Length = 364

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 73/390 (18%), Positives = 167/390 (42%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++ L +G  I+F K++       +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIKLL-EGENINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E   +      +      +E+  F   ++       N I     +  L+L  V+TD  
Sbjct: 113 LTEIIPIVIASENTVKFTMSLEKVKFLTNSSTSTDTLFNSIKMIFKDNVLEL--VSTDSF 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   + ++   I K   ++VP  ++  + +I    D    ++ S+ ++ +  +    + 
Sbjct: 171 RLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAYFTC 228

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK    N   L  A+ +V  +   SS        +   ++L
Sbjct: 229 KLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ + IDN+  + ++D        ++NS
Sbjct: 289 LISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDNVDKNIIID--------ATNS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +R  ++          N  Y++MP+ I
Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362


>gi|19703952|ref|NP_603514.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
 gi|19714128|gb|AAL94813.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           nucleatum ATCC 25586]
          Length = 364

 Score =  174 bits (441), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 74/390 (18%), Positives = 167/390 (42%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINRQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++ L +G  I+F K++       +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIKLL-EGENINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179
             E   +      +      +E+  F   +      L N I     +  L+L  V+TD  
Sbjct: 113 LTEIIPIVIASENTVKFTMSLEKVKFLTNSSASTDTLFNSIKMIFKDNVLEL--VSTDSF 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   + ++   I K   ++VP  ++  + +I    D    ++ S+ ++ +  +    + 
Sbjct: 171 RLIYMKKELNNMINK--DVLVPGDSIAVLYKIFKDLDEEFSLAASDDKLIVTWKDAYFTC 228

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK    N   L  A+ +V  +   SS        +   ++L
Sbjct: 229 KLLSLSFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ + IDN+  + ++D        ++NS
Sbjct: 289 LISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKDFIDNVDKNIIID--------ATNS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +R  ++          N  Y++MP+ I
Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362


>gi|51598692|ref|YP_072880.1| DNA polymerase III, subunit beta [Borrelia garinii PBi]
 gi|51573263|gb|AAU07288.1| DNA polymerase III, subunit beta [Borrelia garinii PBi]
          Length = 386

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 84/399 (21%), Positives = 170/399 (42%), Gaps = 36/399 (9%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
              E + I   +  A  II  +N   +   +L++     L IK++   I     I    +
Sbjct: 7   FICETNQITSEIEKAKGIILNRNMNDIWSALLIEVKRSNLIIKSTDRNIFFESTISIISE 66

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISF-FKENELGTEVNISHGDSN-------FYLQSFP 114
               + ++A   YD V+      +I   F EN    E+     D             +F 
Sbjct: 67  TDFKVLINASNFYDAVKAFSFYKKIKIVFNENNSKLEIMGEAKDEKEEKCEDHLKEPTFS 126

Query: 115 ESEFP----STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
             E          E+Y +  EL     K ++ R  F+   +E +  LNGI+F    ED K
Sbjct: 127 YEEIENYNYDMVNEDYTFEIELKQKSFKKIINRIAFSAHLDESKNVLNGIYF-TKGEDSK 185

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHL 230
           L  V+T+GHR+++ + +++  + +  + IVP K +   L+ L S +  VK+  S+ + ++
Sbjct: 186 LLLVSTNGHRMSICKTEVI--VEEDVNFIVPVK-IFNFLKHLMSGEGMVKIKSSDKKFYV 242

Query: 231 NIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
             ++  ++  LI G +P+Y+++IP   + +  V+ + L+  + RV++    + + + L+ 
Sbjct: 243 EFDNYKIACSLISGNYPDYESIIPKEQENKSLVSLSILKDRLARVNLYV-DKSKKLILTF 301

Query: 291 SSDKLCMTVDNPDMGKAIE----SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
           S  +  +  ++   G+  E    + N  Y+     +  N  Y +E I    + +     +
Sbjct: 302 SELQFKLLGEDLITGRKGEFFIKNPNYLYDGSDEVVAINISYFIEAISVFETSK-----I 356

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +S N            K ++    N  +++MPM +
Sbjct: 357 EIQFNSGN----------VLKLSEPENFNFTHLIMPMSL 385


>gi|197294171|ref|YP_001798712.1| DNA polymerase III beta subunit [Candidatus Phytoplasma
           australiense]
 gi|171853498|emb|CAM11337.1| DNA polymerase III beta subunit [Candidatus Phytoplasma
           australiense]
          Length = 378

 Score =  173 bits (440), Expect = 3e-41,   Method: Composition-based stats.
 Identities = 76/377 (20%), Positives = 167/377 (44%), Gaps = 21/377 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M + + +   L+ L    +I+ +K+  PV   + + A    L ++ +   I I  +I   
Sbjct: 1   MYLEINKDVFLKQLLKIYKILPQKSLFPVFNILKITAKKNTLILEVNNGNIAIQISIEDQ 60

Query: 59  -ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              ++  G I        +I++K+   +      EN     + I      + L+      
Sbjct: 61  SLKIEKEGEIACFGRHFIEIIKKINTLSIKMTVTENNF---LVIKTNFCEYKLKLMTLLG 117

Query: 118 FP-STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           F       E    FEL  S  K +++  + + +  E R  L G      ++ LK  A+AT
Sbjct: 118 FLLPEFFFEKKEFFELKVSSFKKMIKEVNISSSKNEKRPILTGSNLIYEKKTLK--ALAT 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNIESL 235
           D  R++  ++ +        ++++P K++ E+++IL   D+ ++K+   + +I L I++L
Sbjct: 176 DSFRISYKKIKLDFPYFD-FNMVIPNKSLEELIKILEYYDNKNLKIYSDDKKIFLKIDNL 234

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSS 292
                L++G +P  Q     +    + +N  ++ + ++R+S+      V    V   L+ 
Sbjct: 235 WFCTSLLEGNYPQIQEFNLKNYPFVVHLNKDDVMKVLERISLFFSKEEVNKNIVLFKLTE 294

Query: 293 DKLC-MTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           +K+  +++ N ++G A+E  + +       +I FN K+L +I+  ++S      E+VF  
Sbjct: 295 EKIIEISISNENLGTALEKIIPLKVTSEKFEIAFNAKHLEDILKVLTSS-----EIVFYF 349

Query: 351 DSSNSSVFIRGKDKDSK 367
           +S      +   +++S 
Sbjct: 350 ESHLKPFIVTTLEEESS 366


>gi|253584029|ref|ZP_04861227.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium
           ATCC 27725]
 gi|251834601|gb|EES63164.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium varium
           ATCC 27725]
          Length = 363

 Score =  172 bits (437), Expect = 7e-41,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 153/389 (39%), Gaps = 32/389 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK +++R +++ +L     I++     P+   + ++A   L+    +  E++    + A 
Sbjct: 1   MKFSIKREELISILSEYTNILKENPIKPIVSGLQIKAESNLITFVGTNLEVDHIRKVEAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   GS+ +   LL + ++ L D   I F   N   T  +     + F +    E  FP 
Sbjct: 61  VKEEGSLVLKPFLLLEYIKLL-DEEYIEFILNNGFITVHH-----AEFSI--LEEGTFPI 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +    +       L+E++ FA +       +N +       ++ L  V+TD +R
Sbjct: 113 ITETTPIKLLSINGGEFVKLLEKSKFAASLTSDNIQINCVRAIFKLNEINL--VSTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   + +    + K  S  +P   +  I ++L   +  V +  S   I L  E+   S +
Sbjct: 171 LLYLKNEKNCHVEKEIS--IPMDTINVICKLLKDSEKEVIIGFSGENIILTWENAYFSSK 228

Query: 241 LIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQ---AVKLSLSSDKLC 296
            I   FP+++ ++   S  K +  N   L+ A+ RV  ++   +              L 
Sbjct: 229 TIALPFPDFKGILANSSFSKVMEFNRDELKSALKRVITVAKTSVDAKFGAIFDFKGKTLL 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +   +    K  + +N+           N K+L E IDNIS + V+          SN+S
Sbjct: 289 INAFSG-KAKINQKVNMIKEGEDFKSSLNCKFLAEYIDNISDNPVI--------KGSNAS 339

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 +         K +  Y+LMP+ +
Sbjct: 340 SMFEITE-------IGKDDYKYILMPLAL 361


>gi|237744670|ref|ZP_04575151.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
 gi|229431899|gb|EEO42111.1| DNA polymerase subunit III [Fusobacterium sp. 7_1]
          Length = 364

 Score =  172 bits (436), Expect = 8e-41,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 166/390 (42%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++       I     N    +  +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIK------LIEEENINFEKKDGYLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E   +      +     L+E+  F   ++  +    N I     +  L+L  V+TD +
Sbjct: 113 LTEIIPIVVATENTLKFTILLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VSTDSY 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   +  +   + +   ++VP  ++  I +I    D    ++ S+ R+ L  +    S 
Sbjct: 171 RLVYMKKTLNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDAYFSC 228

Query: 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK+   N   L  A+ +V  +   S+        +   ++L
Sbjct: 229 KLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E IDN+  + +++        ++NS
Sbjct: 289 VISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIIIE--------ATNS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +R  ++ ++       N  Y++MP+ I
Sbjct: 340 SSMLRFMEERNE-------NYIYLIMPVNI 362


>gi|213421124|ref|ZP_03354190.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 157

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 51/168 (30%), Positives = 90/168 (53%), Gaps = 14/168 (8%)

Query: 218 SVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
             +V +  + I  ++     + +L+DG FP+Y+ V+P + DK L   C  L+QA  R +I
Sbjct: 4   PARVQIGSNNIRAHVGDFIFTSKLVDGRFPDYRRVLPKNPDKHLEAGCDILKQAFARAAI 63

Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           +S+ + + V+L +S ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++++ + 
Sbjct: 64  LSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALK 123

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                 + V   L  S SSV I               +A YV+MPMR+
Sbjct: 124 C-----ETVRIMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 157


>gi|260494531|ref|ZP_05814661.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
 gi|260197693|gb|EEW95210.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_33]
          Length = 364

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 162/390 (41%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++       I     N    +  +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIK------LIEEENINFEKKDGYLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E   +      +     L+E+  F   ++  +    N I     +  L+L  V+TD +
Sbjct: 113 LTEIIPIVVTTENTLKFTILLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VSTDSY 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   +  +   + +   ++VP  ++  I +I    D    ++ S+ R+ L  +    S 
Sbjct: 171 RLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDAYFSC 228

Query: 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK+   N   L  A+ +V  +   S+        +   ++L
Sbjct: 229 KLLSLNFPDFRPLINNANHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E IDN      VD  ++    +S+S
Sbjct: 289 VISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDN------VDKNIIIEATNSSS 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + I          ++   +  Y++MP+ I
Sbjct: 342 MLKI---------MEEGNEDYIYLVMPVNI 362


>gi|254304259|ref|ZP_04971617.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
 gi|148324451|gb|EDK89701.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           nucleatum subsp. polymorphum ATCC 10953]
          Length = 364

 Score =  171 bits (434), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 77/390 (19%), Positives = 170/390 (43%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ R   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINRQKTIEIIGEYSNILKDNPVKPSLVGLFIQAKNNQVVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++ L +G  I+F +++       +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIKLL-EGENINFERKDG-----YLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179
             E   +      +      +E+  F   +      L N I     +  L+L  V+TD  
Sbjct: 113 LTEIIPIVIASENTVKFTMSLEKVKFLTNSSASTDTLFNSIKMIFKDNILEL--VSTDSF 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   + ++   I K   I+VP  ++G + +I    D    ++ S+ R+ +  +    + 
Sbjct: 171 RLIYMKKELNNTINK--DILVPGDSIGVLYKIFKDLDEEFSLAASDDRLIVTWKDAYFTC 228

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++++I   ++DK    N   L  A+ +V  +   SS        +   ++L
Sbjct: 229 KLLSLSFPDFRSLINNTNHDKRFEFNREELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+  +   + +  N KY+ E IDN+  + ++D        ++NS
Sbjct: 289 LISGVSAN-AKINQKVNMIKSGEDLKLGMNCKYIKEFIDNVDKNIIID--------ATNS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +R  ++          N  Y++MP+ I
Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362


>gi|255039230|ref|YP_003089851.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
 gi|254951986|gb|ACT96686.1| DNA polymerase III, beta subunit [Dyadobacter fermentans DSM 18053]
          Length = 382

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 76/386 (19%), Positives = 157/386 (40%), Gaps = 20/386 (5%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           +VE +D+   L    +++     IP+  ++L       L +  S     +  +I A    
Sbjct: 11  SVETADLKRALHLFAKVVREAPLIPILDNILFSFELDELHLTGSNLITTVFTSIQADGSS 70

Query: 64  C-GSITVSAHLLYDIVRKLQDGAQISFFKENEL-GTEVNISHGDSNFYLQSFPESEFPST 121
             G   +    +  +V     G       E+E  GTEV ++     F   S  +      
Sbjct: 71  TVGKFLLPYRQIKALVSLSPAGKIAFRAVESEDVGTEVMVTTEYGEFKFSSLEKIGDYPA 130

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                +  F +    L+  ++ T   ++T+E+R  L GI+F   E  +K   ++TDGH+L
Sbjct: 131 LSWSPISHFNIGMDELREGMKLTRKTVSTDELRPPLTGIYFDTAEGCIKF--ISTDGHKL 188

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS-LSESRIHLNIESLSMSVR 240
              E      +  +   I+P      ++   + K ++V    L  +++  N  S  + VR
Sbjct: 189 TKYETS-EPAVESILPFILPANFADFVISNTALKQNAVSFGCLPGAKVVANFGSCVVLVR 247

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
            ID  FPNY+  IP + +  ++++   ++  +    + S+     +    S+ +L +  +
Sbjct: 248 CIDEFFPNYKAAIPEAFEHAVQLDLAQIKTRIQLGLLFSNRATTQMAFVFSNGRLSLESE 307

Query: 301 NPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           + D G K+ +S+ +      + I FN +++  I+   S       +V   + + N     
Sbjct: 308 DFDYGMKSKQSLEMEQPVPELKIGFNVRFMSTILAPFSG------KVTLLMSAPNKPAVF 361

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + K  K+ +        +LMP+ +
Sbjct: 362 IPQAKFGKSVQL-------LLMPVML 380


>gi|256026449|ref|ZP_05440283.1| DNA polymerase III, beta chain [Fusobacterium sp. D11]
 gi|289764461|ref|ZP_06523839.1| DNA polymerase subunit III [Fusobacterium sp. D11]
 gi|289716016|gb|EFD80028.1| DNA polymerase subunit III [Fusobacterium sp. D11]
          Length = 364

 Score =  171 bits (433), Expect = 2e-40,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 162/390 (41%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYSNILKDNPVKPSLAGLFIQAKNNQVVFKGANTEIELIRYANCD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++       I     N    +  +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIK------LIEEENINFEKKDGYLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E   +      +     L+E+  F   ++  +    N I     +  L+L  V+TD +
Sbjct: 113 LTEIIPIVVATENTLKFTILLEKVKFLTNSSNNMDTLFNSIKMIFKDNILEL--VSTDSY 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   +  +   + +   ++VP  ++  I +I    D    ++ S+ R+ L  +    S 
Sbjct: 171 RLVYMKKALNNTVNR--DVLVPGDSIAVIYKIFKDLDEEFSLAASDDRLILTWKDAYFSC 228

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK+   N   L  A+ +V  +   S+        +   ++L
Sbjct: 229 KLLSLNFPDFRPLINNTNHDKKFEFNRDELNLALKKVISVTKNSNDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E IDN      VD  ++    +S+S
Sbjct: 289 VISGVSAN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDN------VDKNIIIEATNSSS 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + I          ++   +  Y++MP+ I
Sbjct: 342 MLKI---------MEEGNEDYIYLVMPVNI 362


>gi|237742193|ref|ZP_04572674.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|256845466|ref|ZP_05550924.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
 gi|229429841|gb|EEO40053.1| DNA polymerase subunit III [Fusobacterium sp. 4_1_13]
 gi|256719025|gb|EEU32580.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_36A2]
          Length = 364

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 167/390 (42%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++ L +   I+F K++       +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIK-LVEEDNINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179
             E   +      +      +E+  F   +      L N I     +  L+L  V+TD  
Sbjct: 113 LTEIIPIVIATENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNILEL--VSTDSF 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   + ++   I K   I+VP  ++  I +IL   D    ++ S+ ++ +  +    + 
Sbjct: 171 RLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVTWKDAYFTC 228

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK    N   L  A+ +V  +   SS        +   ++L
Sbjct: 229 KLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E IDN+  + +++        ++NS
Sbjct: 289 VISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNLIIE--------ATNS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +R  ++          N  Y++MP+ I
Sbjct: 340 SSMLRFMEE-------GNENYIYLIMPVNI 362


>gi|65319987|ref|ZP_00392946.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bacillus anthracis str. A2012]
          Length = 236

 Score =  170 bits (432), Expect = 3e-40,   Method: Composition-based stats.
 Identities = 61/250 (24%), Positives = 120/250 (48%), Gaps = 22/250 (8%)

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
           +  ++T FA+A  E R+ L G+   +  +  KL   ATD HRLA+ E  I   +    + 
Sbjct: 3   DAFKQTVFAVAKNESRHVLTGVHIEL--DHNKLICAATDSHRLAIRETLISTNM--KANC 58

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           IVP   + E+L++++S    V + LSES I     + ++  RLI+G++PN   +IP    
Sbjct: 59  IVPSATINELLKLMNSNLEFVSIYLSESHIIFTFGTTTLYSRLIEGKYPNISTLIPNEFQ 118

Query: 259 KELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSL-SSDKLCMTVDNPDMGKAIE--SMNVY 314
             + ++   + Q VDR S+++S      V L + +   + ++ +   +GK  E   ++V 
Sbjct: 119 TVINIDRQRMLQGVDRSSLLASEWANNNVNLEIVNESTIQISSNASQIGKISEKQQIDVI 178

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
             +  ++I F+ +++L+ +  I      ++ V      S   + I    + +        
Sbjct: 179 QGKKQLNISFDGRFMLDALRAIK-----EETVTLSFSGSMRPILIEAGTQSA-------- 225

Query: 375 NAFYVLMPMR 384
            A +++ P+R
Sbjct: 226 -AIHLISPVR 234


>gi|294785230|ref|ZP_06750518.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
 gi|294486944|gb|EFG34306.1| DNA polymerase III, beta subunit [Fusobacterium sp. 3_1_27]
          Length = 364

 Score =  170 bits (430), Expect = 5e-40,   Method: Composition-based stats.
 Identities = 75/390 (19%), Positives = 169/390 (43%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ +   +E++G    I++     P    + +QA +  +  K +  EIE+       
Sbjct: 1   MKFSINKQKTIEIIGEYINILKDNPVKPSLAGLFIQAKNNQIVFKGANTEIELIRYANCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G + +   LL + ++ L +   I+F K++       +   ++ F +    ++ +P 
Sbjct: 61  IESEGQVLIKPALLLEYIK-LVEEDNINFEKKDG-----YLIVNNAEFSI--LDDNTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAVATDGH 179
             E   +      +      +E+  F   +      L N I     +  L+L  V+TD  
Sbjct: 113 LTEIIPIVIATENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNILEL--VSTDSF 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   + ++   I K   I+VP  ++  I +IL   D    ++ S+ ++ +  +    + 
Sbjct: 171 RLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKLIVTWKDAYFTC 228

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I   ++DK    N   L  A+ +V  +   SS        +   ++L
Sbjct: 229 KLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSSDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E IDN+  + +++        ++NS
Sbjct: 289 VISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIIIE--------ATNS 339

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S  +R  ++ ++       N  Y++MP+ I
Sbjct: 340 SSMLRFMEERNE-------NYIYLIMPVNI 362


>gi|168704010|ref|ZP_02736287.1| DNA polymerase III subunit beta [Gemmata obscuriglobus UQM 2246]
          Length = 366

 Score =  168 bits (426), Expect = 1e-39,   Method: Composition-based stats.
 Identities = 73/362 (20%), Positives = 146/362 (40%), Gaps = 18/362 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T++R  +  LL  A   +  + T PV   V +  +DG + + A+  E+ +TG   A 
Sbjct: 1   MNLTIDRDTLAGLLRTAAPAVPSRTTAPVLRCVKVTTSDGSVSVSATNTELFVTGRATAE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A ++   V+    G           G    + +   ++ L +   S+FP 
Sbjct: 61  TGKPGSLCVPADVIQSAVKLAPSGPVSIVS-----GARAELKYAGGSYKLNTEDVSKFPE 115

Query: 121 -TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               E    SFE+ +  L   + R  F  +     +  +G++  +   + +  AVATD  
Sbjct: 116 WVPPELQGVSFEIDAPALVRCLTRVAFCCSERVESFTTSGVWLEVA--NGEFNAVATDSI 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL +A   +   +    S +VP   V  +    S +   V V++  S +    +SLS++ 
Sbjct: 174 RLGIATAKVADGV--QASALVPAPTVQAVKAAFSGRTGPVTVTVWGSTVRFADDSLSIAS 231

Query: 240 RLIDGEFPNYQNV--IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
            L+ G+F  ++ +      +      + + L +AV R ++ +     AV L+     L +
Sbjct: 232 PLLTGKFAPWRMLEQKVKPHGTTFVDDPSALLRAVRRATVTADAADTAVVLTGEGPTLTL 291

Query: 298 TVDNPDMGKAIESMNVYYNE---CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
                 +G+                +    + K L + +   +SD V  + + F  ++  
Sbjct: 292 KAAGA-VGEGEVEHVCKSQSGVASAVTTKMDPKNLTDALALAASDGV--ESITFAFEARK 348

Query: 355 SS 356
           ++
Sbjct: 349 AA 350


>gi|134096941|ref|YP_001102602.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|291006617|ref|ZP_06564590.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
 gi|133909564|emb|CAL99676.1| DNA polymerase III beta subunit [Saccharopolyspora erythraea NRRL
           2338]
          Length = 364

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 76/359 (21%), Positives = 133/359 (37%), Gaps = 25/359 (6%)

Query: 28  PVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQI 87
           PV   ++L A    LE+  +  E  I  +  A     G I V A  L + +R L D  ++
Sbjct: 30  PVLAGMVLTATPQGLELAGTDRERGIRLSRRARTHAEGRILVPARPLAETLRNL-DSVEV 88

Query: 88  SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147
               E   G ++ +   ++ F L     +  P  +          A+ +    V     A
Sbjct: 89  RLVVE---GAKLALRTRNARFALPLLDLAAHPGVRAAPPRAGALDAALLPAVAVV--AAA 143

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207
            + ++      G+  H+ +   +L    TD  R+AVA +        +  ++VP   + E
Sbjct: 144 TSRDDALPVFTGV--HVKQRGERLVLAGTDRFRMAVATLPWRPGTDDL-DVLVPSGLLTE 200

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267
           + +  S  +  V +     R+ L+     +S  L+D  FP+    +    D  + V    
Sbjct: 201 VAKQASGDE--VMLRADADRVGLSWADAEVSTTLLDAPFPDESRHLLPEVDCAVEVRADE 258

Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327
           +  AV RVS  +     AV L +   ++ +   +P  G A E++            F  +
Sbjct: 259 VAGAVRRVSPYAGAH-GAVVLDVGDAEVRVRAADPQFGDAQEAVKATVTGDRFSPAFQPR 317

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSS-NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           YL + +   +        V   L S    S  I   D         + +  YVLMP RI
Sbjct: 318 YLADALQAFAGRT-----VRMGLRSGLRRSTVISDVDAP-------EADLRYVLMPKRI 364


>gi|229496336|ref|ZP_04390056.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC
           35406]
 gi|229316914|gb|EEN82827.1| DNA polymerase III, beta subunit [Porphyromonas endodontalis ATCC
           35406]
          Length = 392

 Score =  167 bits (423), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 69/399 (17%), Positives = 159/399 (39%), Gaps = 27/399 (6%)

Query: 1   MKITVERSDILELLGHACRIIER-KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           M+  +   ++  LL +  +++    N +PV  + L +  D  L +  S   +   G +P 
Sbjct: 1   MQFKIASGELSTLLQNQSKVVPTVYNEMPVLTYFLFEIQDNNLYVTGSDGMMRSRGVLPV 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS--FPES 116
            + +   +  V    + + V+ L D   +  ++       +    G   F          
Sbjct: 61  ITSEGNATFAVHPKDILEYVKGLPDQPLLFDYEAETSTLLMTFEGGYIRFATSDGELYPK 120

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           +    +E E  +   +++S ++  ++ T  +MA +  R  L  + F    + L + A +T
Sbjct: 121 DDKDREEAETAHVATMSASAMRRGLDLTIGSMAEDARRPILASVCFDFKAKYLAMVATST 180

Query: 177 D----GHRLAVAEVDIVAQIA----KMPSIIVPRKAVGEILRILSS-KDSSVKVSLSESR 227
           +         V +  IV              +P+K    +  +L+S  D  V +S ++ +
Sbjct: 181 EILTKYTDSTVVDPSIVEPADVRVQSPYQFCLPQKMANFLRALLASFTDEEVTLSHTDRK 240

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-- 285
               + ++  S RL++G +P Y +VIP  N   + +       A+ R++   S       
Sbjct: 241 AFFKVGNIEASTRLVEGRYPPYDSVIPRDNPHRISIEGRLFVPAIKRMNSFMSSPNHPLV 300

Query: 286 VKLSLSSDKLCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEVVDD 344
           +++S+  + + +++D  D+ +A +   +   +   M + F     + +I+ I S      
Sbjct: 301 MQMSIEGNLMTVSMDVQDVRQAEQRFPIENPSNLSMKLRFKVHSFIALINTIESS----- 355

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +VF +  ++ ++ I   +        N      V+MP+
Sbjct: 356 NIVFEIADASRAMVIIPSENPKDTELTN------VIMPI 388


>gi|156564023|ref|YP_001429765.1| DNA-directed DNA polymerase III beta chain [Bacillus phage
           0305phi8-36]
 gi|154622720|gb|ABS83600.1| DNA-directed DNA polymerase III beta chain [Bacillus phage
           0305phi8-36]
          Length = 361

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 68/347 (19%), Positives = 135/347 (38%), Gaps = 17/347 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIP 58
           MK+ V   ++ + L      I  +        + + A      +++  +         +P
Sbjct: 1   MKVDVALDELKKGLQVVKDTIGTET--QGHEGIKIYASKKTNRIKLTTTDGSNTTEVWVP 58

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
           A V   G   V A      V KL D   + F      G ++            S+ E  F
Sbjct: 59  AGVKETGKFVVKAKKFIAYVSKL-DVQTVMFAISKGGGLQLKTKPAKGQQTFISYQEESF 117

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAM--ATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           P T + +  +SF+++  V K L+    FA   + E  R  L GI F  +   LKL   +T
Sbjct: 118 PKTPKLQSKFSFDMSGLVFKKLINNVAFAADSSREASRPILQGIQFVSDGNLLKL--TST 175

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG  +A  +  I +      ++++ +K++    ++++  +     +   +   +     +
Sbjct: 176 DGFTIANYKRKIKS---DPFNVVLGKKSLVNCAKVVADDEKVTMQACENNHFIVKTGLAT 232

Query: 237 MSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             +  + G FPN  NV+P    D +   +   L   +DR SIM         L     K+
Sbjct: 233 YHLPTLAGNFPNTDNVLPGKEFDLQFLADRDELLGLLDRASIMIDGSG---ILQFEKGKV 289

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            +T ++ + G   E +         ++  + K +++++ +I SD + 
Sbjct: 290 TLTGNSQE-GNFSEFIMTKLQGEATEVSVSVKRIIDVVKHIDSDMIT 335


>gi|89097418|ref|ZP_01170307.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
 gi|89087714|gb|EAR66826.1| DNA polymerase III subunit beta [Bacillus sp. NRRL B-14911]
          Length = 392

 Score =  166 bits (422), Expect = 3e-39,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 147/401 (36%), Gaps = 42/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCH--VLLQANDGLLEIKASGPEIEITGAIP 58
           M+  V    I E +  A RI    ++        V+++A+ G L + +   +  +    P
Sbjct: 1   MEFKVNGESIFESISEAARIAGGSHSA---AGKLVMIEAHSGGLSVSSGNGDRSVIFEHP 57

Query: 59  A--------SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY- 109
                     +   G +     +L +++RK+     I          ++ I+  D     
Sbjct: 58  LINCRDSGLDILEYGKLAADGRMLSEVIRKIPGRLSIKAST----SHKILINSMDKQISA 113

Query: 110 -LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            +  FP  +FP     E+ Y + L +S L   +  T  + A    R  L GI    +E  
Sbjct: 114 AIAGFPLDQFPDRAHVEFPYIYPLEASDLAAGLRNTAASAAKTSSRPILEGINLAFDENG 173

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESR 227
           L     ATD  RLA              S  +P +   E+L+++  S      + +S+S+
Sbjct: 174 LTF--TATDSSRLA--MWKADGSAGFSQSFTLPARNAAELLKLIGKSPSGEAAIYISDSQ 229

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAV 286
                 +      L+ G FP+ + + P     EL +N  +L Q V R  I +  +    V
Sbjct: 230 AVFATSTFRFCSSLLTGRFPSSEKLKPEGCKTELVINRKHLLQGVKRTMIFAGEKRSSLV 289

Query: 287 KLSLSS-DKLCMTVDNPDMGKAIE--SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
            +     + + ++    +MG   E   +     E       N  YL + +  I ++    
Sbjct: 290 SIQAKDENSITISSPMSEMGMIEEVQELQSIRGETEASAVINGSYLADAL--IGTE---S 344

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + +  RL  +   + I             + N F+++ P+R
Sbjct: 345 EYIKIRLYGTMKPILISSP---------GEANYFHLISPVR 376


>gi|323486044|ref|ZP_08091375.1| DNA polymerase III [Clostridium symbiosum WAL-14163]
 gi|323400611|gb|EGA92978.1| DNA polymerase III [Clostridium symbiosum WAL-14163]
          Length = 349

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 68/386 (17%), Positives = 153/386 (39%), Gaps = 39/386 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++++++   L     ++ +K T+P+   +L    +G L   A+  E+ I   +  +
Sbjct: 1   MK--IQKTELAAKLNQIKGVVPKKTTMPILQGIL--VKEGYLI--ANNLEMTIKAKLEGT 54

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D C    +      D++  L DG           G  + I         Q+     FP 
Sbjct: 55  EDEC--FIIPERAF-DLINNLPDGEIDITIS---GGNTMTIKADKIKNKYQTMDPGPFPV 108

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
           +  E     F + + +L   V R  +A+  +     ++     +  +D +L  V  DGH 
Sbjct: 109 SDIEGEGSEFTIKAGLLLESVRRVSYAIPQQGGNATMS--TMCLQAKDGQLNFVGLDGHV 166

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LA  ++D   +      +++P+  + ++  +  + D  +++  S +      +   +  R
Sbjct: 167 LAWDKIDYDGE----FELLIPKNTIDKLKTLGLTGD--IRIRRSNAMAVFATKDFEICTR 220

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           L+ GE+  YQN+          ++   L  A+ R  + ++ +   VK  LS  +L +++ 
Sbjct: 221 LVQGEYYKYQNMF-KELPLHTVISRKELLDAMVRAKMCTAEK-CPVKFELSGSQLNLSIK 278

Query: 301 NPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +       E++++  +    + I F+ + ++E +          D V   L      + +
Sbjct: 279 DQTT-DYHETVDLQEDISEELTIGFDARLVIETLKAFDC-----DNVGISLQGPKMPMIV 332

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +D D K           +++P+ I
Sbjct: 333 EAEDSDFKT----------IVLPVAI 348


>gi|183983898|ref|YP_001852189.1| DNA polymerase III (beta chain) DnaN_1 [Mycobacterium marinum M]
 gi|183177224|gb|ACC42334.1| DNA polymerase III (beta chain) DnaN_1 [Mycobacterium marinum M]
          Length = 380

 Score =  166 bits (422), Expect = 4e-39,   Method: Composition-based stats.
 Identities = 58/346 (16%), Positives = 125/346 (36%), Gaps = 11/346 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  +    + E +  A   +  +    +   VL++A  G +   +       T    A 
Sbjct: 1   MKFVINSGTLAETIAAAISSLPTRPAASILGGVLVEAQLGTVTFSSFNYNRATTRLTAAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V    ++ V+  LL  +   L  G +      N    E+ I+   + F L     +++P 
Sbjct: 61  VADTDTVVVAGRLLAAVGANLPKGPECQVTVGN---AEMVIATPRTEFRLPVLHATDYPR 117

Query: 121 TKEEEYVYSFEL-ASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                   +     +      V       +T+ +      +        ++LC  ATD +
Sbjct: 118 LPVMGSEDAIGCVNAESFSEAVHVIGRFASTDALPAEFTALNIDCRPGQMRLC--ATDRY 175

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-SSVKVSLSESRIHLNIESLSMS 238
            +A  E++     A   +I VP   +   ++  S      +++  + + + L   S ++ 
Sbjct: 176 MIARREIEWTG--AGEANINVPAADLLATIKAASGNGAEPIEILWNGATLGLRTPSTTVI 233

Query: 239 VRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
            R++D EFPN   V+   +     + V    L   + R + ++  +   + ++++SD L 
Sbjct: 234 TRVLDEEFPNVDRVLSLKSPFHAAVTVPTAELASTLKRAASIADDQNAQIDVAINSDTLS 293

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +T      G   E++    +     I  + + L   +  I    V 
Sbjct: 294 VTTTQSTAGNIDETVAAVQHGGDRKIALSSRRLHNTLSAIDDPNVT 339


>gi|163737540|ref|ZP_02144957.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107]
 gi|161389066|gb|EDQ13418.1| DNA polymerase III, beta subunit [Phaeobacter gallaeciensis BS107]
          Length = 378

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 81/389 (20%), Positives = 155/389 (39%), Gaps = 32/389 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           + V+ S++   L    ++ E  + IP+    L Q   G L I A+  + E    +     
Sbjct: 16  LKVDISELRAALAWVNKVRETWSRIPILSQNLFQVEGGQLAITATCLDREARQTLSCDTS 75

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
              S  ++ H +  +   L     I      +L T    ++G S       P  ++P+T 
Sbjct: 76  DAWSFVMNGHRVMKVTAGLSGTVTIEHDIAKDLLT--LTANGMSLAMNVMAPPEDWPTTN 133

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           ++E +   E+  + L   +      ++TEE RYYLNGI++     D     V T+GHRLA
Sbjct: 134 KQEPLGGIEVGENTLLRALNLVKSCISTEETRYYLNGIYW--TSHDGASRMVTTNGHRLA 191

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSL-----SESRIHLNIESLS 236
             +++          +I PR  +  +  +L+ + +   K++      + + + + +    
Sbjct: 192 RLDLEAPNP---PFDVIFPRIGITPLAAMLTANGNQLAKITYRGADKTPTLLSIEMGDRE 248

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
           +  +LIDG +P+Y  VIP  + ++   +    + A  R+ +M+       K+S     + 
Sbjct: 249 LHCKLIDGTYPDYNRVIPSVDGEQA-FDIIIPKSATQRLRLMAGPHDLGCKISPEKGTMT 307

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +  ++ D GK   +        P DI FN  YL       +        +  R   + + 
Sbjct: 308 IGREDHD-GKMSVTYAAKGKSGP-DIGFNTLYL-------AQTTATMGNIRLRAKDNGAP 358

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                         +   +   VLMPMR+
Sbjct: 359 AL---------ATSEAHTDLIMVLMPMRV 378


>gi|261884881|ref|ZP_06008920.1| DNA polymerase III subunit beta [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 304

 Score =  166 bits (421), Expect = 5e-39,   Method: Composition-based stats.
 Identities = 69/317 (21%), Positives = 150/317 (47%), Gaps = 15/317 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
           M + ++ + +  ++ +     ++K+   +S H+ L A DG+L IKA+  EI +   +  A
Sbjct: 1   MIVLIKNNVLESIVINTNPYRDKKDLSSISSHIFLSARDGVLNIKAADNEIGLEYKVKNA 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           ++   G  T +   L DI++ L+DG  +    +N     + I   +S + L      +FP
Sbjct: 61  TIADEGMATANGKKLLDIIKSLKDGDIMLETIQNH----LYIKQNNSKYRLPMQKPEDFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
                E    F++ +  L   +++   ++     +  L G    I ++ + L  V TD  
Sbjct: 117 EFPSLENKKKFDINAGSLSKSLKKISSSIENVNSKIELTGALIDIKKDHINL--VGTDTK 174

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL+V +++I +Q     SII+P+KA+ EI ++      ++++   E+      ++     
Sbjct: 175 RLSVYQLEINSQ-NDPFSIIIPKKAITEIQKLFF---ENIEIYYDENIFIAVSQNFEFFT 230

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           +LI+G +P+Y  V+P    + + +N   + + +  +S++S      VK++++ D +    
Sbjct: 231 KLINGRYPDYTRVVPNEIKQNIILNREKIIEGIKTISMLSE----IVKITIAPDNISFER 286

Query: 300 DNPDMGKAIESMNVYYN 316
            N D  +A   + ++  
Sbjct: 287 INDDYSEAKTIIRIFKE 303


>gi|262067571|ref|ZP_06027183.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
 gi|291378686|gb|EFE86204.1| DNA polymerase III, beta subunit [Fusobacterium periodonticum ATCC
           33693]
          Length = 364

 Score =  166 bits (420), Expect = 6e-39,   Method: Composition-based stats.
 Identities = 67/390 (17%), Positives = 162/390 (41%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + +++ ++     I++     P    + ++  +  +  K +  E+E+      +
Sbjct: 1   MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++V G + +   LL + ++       I     N    +  +   ++ F +    E+ +P 
Sbjct: 61  IEVEGQVLIKPSLLLEYIK------LIESENINLEKKDGYLIVNNAEFSI--LDETTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            KE       +     +  L+E+  F   ++  +    N I     +  ++L   +TD +
Sbjct: 113 IKEVPSTTIAKENGIQVAMLLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIEL--ASTDSY 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   +  +   + K   I+VP  ++  I +IL   +  V ++  E ++ +  +    S 
Sbjct: 171 RLIYFKKQLENMVNK--DILVPGDSISVIYKILKDLNEDVSLATCEDKLIITWKDAYFSC 228

Query: 240 RLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I  S +DK+   N   L  ++ +V  +   S+        +   ++L
Sbjct: 229 KLLSLTFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   + +  K  + +N+      + +  N KY+ E +DN       D  ++    +S+S
Sbjct: 289 LINGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDN------TDKNIIIEATNSSS 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + I  +  +         N  Y++MP+ I
Sbjct: 342 MLKIVEETNE---------NYIYLVMPVNI 362


>gi|269123356|ref|YP_003305933.1| DNA polymerase III, beta subunit [Streptobacillus moniliformis DSM
           12112]
 gi|268314682|gb|ACZ01056.1| DNA polymerase III, beta subunit [Streptobacillus moniliformis DSM
           12112]
          Length = 371

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 79/387 (20%), Positives = 161/387 (41%), Gaps = 27/387 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            I + R + L+ +      I       ++  + ++  D  L +KA G  + I   +P  +
Sbjct: 3   NIRLNRKEFLKKIQIVENAIVDDKANGINSGIFIETLDDKLLLKAMGEGLYIKAEMPCEI 62

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G   +   L+ + +++L    +I   KE      +      S F +  + +   P  
Sbjct: 63  VEKGEFIIKHKLMEEFLKQL--DQEIIEIKEVNGKISIISGKSSSEFSIYEYEKRNEPYI 120

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                   F      L N +ER  FA      R  +N I F I  ++L L  VA+D HRL
Sbjct: 121 ---TNGLEFSFKREELLNDLERVKFAAYLNLDRLAVNCIRFEI--DNLGLKFVASDAHRL 175

Query: 182 AVAEVDIVAQIA-KMPSIIVPRKAVGEILRILSSKDSSVKVSLSES-RIHLNIESLSMSV 239
              +     +   +  SI +P ++V  + +IL   +  V    SE  RI    + + +  
Sbjct: 176 IFLDKKFEEKANIETLSISIPLRSVNSLSKILKIMEDEVLTFKSEGTRILFKFKDVEILT 235

Query: 240 RLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L++ ++P+Y++++    N+K+  +N  +L   + RVS+    ++ +        + ++L
Sbjct: 236 KLVEMQYPDYKSLLNSVRNNKKALLNTRDLTSILKRVSVFVKDNNDKKDIAIFKFNDNQL 295

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            +   N D+  + E +N  Y    + I  N +Y+L+ +  IS   V++     ++    +
Sbjct: 296 EVVGSN-DLAVSQEKINCIYEGDNLKIALNVRYILDYLLTISESTVLE----MKMFDERT 350

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            V +         N +N   + Y++ P
Sbjct: 351 PVLL---------NVENSTESIYLVAP 368


>gi|294782354|ref|ZP_06747680.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
 gi|294480995|gb|EFG28770.1| DNA polymerase III, beta subunit [Fusobacterium sp. 1_1_41FAA]
          Length = 364

 Score =  165 bits (418), Expect = 1e-38,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 170/390 (43%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + +++ ++     I++     P    + ++  +  +  K +  E+E+      +
Sbjct: 1   MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++V G + +   LL + ++ L +   I+F K++       +   ++ F +    E+ +P 
Sbjct: 61  IEVEGQVLIKPSLLLEYIK-LVESENINFEKKDG-----YLIVNNAEFSI--LDETTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            KE       +  S    NL+E+  F   ++  +    N I   I  +D  +   +TD +
Sbjct: 113 IKEVVSTTIAKENSQKFSNLLEKVKFLTNSSSNLDALFNSI--KITFKDNFVELASTDSY 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   +  +   ++K   I+VP  ++  I +IL   +  V ++ SE ++ +  +    S 
Sbjct: 171 RLIYLKKPLENVVSK--DILVPADSMAVIYKILKDLNEDVTLATSEDKLIVTWKDAYFSC 228

Query: 240 RLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP++  +I   ++DK+   N   L  ++ +V  +   S+        +   ++L
Sbjct: 229 KLLSLSFPDFIPLITNPNHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKGNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E +DN       D  ++    +S+S
Sbjct: 289 LISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFVDN------TDKNIIIEATNSSS 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + I  +  +         +  Y++MP+ I
Sbjct: 342 MLKIVEEANE---------DYIYLVMPVNI 362


>gi|257463320|ref|ZP_05627717.1| DNA polymerase III, beta chain [Fusobacterium sp. D12]
 gi|317060897|ref|ZP_07925382.1| DNA polymerase subunit III [Fusobacterium sp. D12]
 gi|313686573|gb|EFS23408.1| DNA polymerase subunit III [Fusobacterium sp. D12]
          Length = 365

 Score =  164 bits (416), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 80/389 (20%), Positives = 157/389 (40%), Gaps = 31/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ ++R + + +L     I+   +  P+   + ++     L    S  E++    I   
Sbjct: 1   MKLKMKREEFISILSDYTSILRENSIKPILSTLFMEVKGNDLVFMGSSVEMDYKKQILCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+     L+ + V+ L++     +    +L   + I++G   F +  + E  +P 
Sbjct: 61  GMEDGSVVFKPALVLEYVKLLEE----EWITVEKLDGFLKIANG--EFSI--WEEENYPK 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +   EL+ +     +E   F+ A       L+ I     +E  K+  V+TD +R
Sbjct: 113 IVELASMSLLELSGNEFAKCLETVKFSAAQTPENLALHCIRIVFGKE--KVYFVSTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   E  + AQ  +  +I +P  AV  I+++L  K   + + LS   +    E    S R
Sbjct: 171 LLYLEKKMTAQFER--AISLPLDAVNVIIKLLKDKTEQISLELSGDNLLFLWEGTYFSCR 228

Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296
           L    +PN+Q ++  +  DK++     +L+ A+ RV  ++   I A            L 
Sbjct: 229 LTAVPYPNFQGILSQNAFDKKMEFCLDDLKAAMKRVITVAKTSIDAKYGGTFDFKGKHLV 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +        K  + + +           N KYL E +D++S + +++ +        NSS
Sbjct: 289 VKAVTTGRAKTQQKIAMMKEGEDFVASLNCKYLSEFLDSVSRNVIIEGK--------NSS 340

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              R  ++             Y+LMP+ +
Sbjct: 341 SMFRVTEE-------GNEELIYILMPLAL 362


>gi|302530874|ref|ZP_07283216.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4]
 gi|302439769|gb|EFL11585.1| DNA polymerase III, beta subunit [Streptomyces sp. AA4]
          Length = 365

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 68/351 (19%), Positives = 139/351 (39%), Gaps = 23/351 (6%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE 92
           + L+AN   L +  +  ++ +  + PA+  + G + V A    + VR L D  Q+    E
Sbjct: 35  LRLRANADGLVVSGNDRDLAVQLSCPATTHLDGEVVVPAAPFAETVRML-DVDQVRLVVE 93

Query: 93  NELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEE 152
              GT + I    + F L    + +         + S ++    L+  +       A ++
Sbjct: 94  ---GTRLAIRTDSARFALP-LLDRDLLHDPSPPPLLS-KVDGLALEAALRTVAGTAAKDD 148

Query: 153 IRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
                 G+   +     +LC  A D +R+AVA + +  ++     ++VP   + E  R  
Sbjct: 149 PLPVFTGVR--VQSIGGELCLTACDRYRMAVARLPL-REVRDPIDVLVPATLLTEAAR-- 203

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
                ++ +   +    L+    +++  ++D  F +  ++   + D E+ V+   L  A+
Sbjct: 204 -HGSGAMGLHADDRHFALSWPGGTVTTAVLDAGFLSADSIPSNAIDTEVEVSADELAAAI 262

Query: 273 DRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEI 332
            RV + S  R + + L +    L +     D G+A E +            F+ +YLL+ 
Sbjct: 263 RRVGVYSEDR-RVLTLEVGDAHLRLASARQDTGEAEEHLKANVCGGRTSPSFHARYLLDA 321

Query: 333 IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +   S      + V   +     +  +   D+D +     +V   Y LMPM
Sbjct: 322 LAPFSG-----ERVRLAIQPGLRACVLTPADEDGR-----EVALMYYLMPM 362



 Score = 41.8 bits (97), Expect = 0.19,   Method: Composition-based stats.
 Identities = 15/72 (20%), Positives = 25/72 (34%), Gaps = 1/72 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA-SVDVCGSI 67
            +   L        + + +PV   V +Q+  G L + A          +P   V     +
Sbjct: 132 ALEAALRTVAGTAAKDDPLPVFTGVRVQSIGGELCLTACDRYRMAVARLPLREVRDPIDV 191

Query: 68  TVSAHLLYDIVR 79
            V A LL +  R
Sbjct: 192 LVPATLLTEAAR 203


>gi|257467227|ref|ZP_05631538.1| DNA polymerase III, beta chain [Fusobacterium gonidiaformans ATCC
           25563]
 gi|315918356|ref|ZP_07914596.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           gonidiaformans ATCC 25563]
 gi|313692231|gb|EFS29066.1| DNA-directed DNA polymerase III beta subunit [Fusobacterium
           gonidiaformans ATCC 25563]
          Length = 365

 Score =  164 bits (415), Expect = 2e-38,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 157/389 (40%), Gaps = 31/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R + + +L     I++  +  P+   + ++  +  L    S  E++    I   
Sbjct: 1   MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++     L+ + ++ L++     +    +L   + I++G   F +    E  +P 
Sbjct: 61  GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG--EFAI--LEEENYPK 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +   ++  +     +E   F+ +       LN I     +E  K+  V+TD +R
Sbjct: 113 IVELASMSLLQIQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KINFVSTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   E  I AQ  +  +I +P +AV  I+++L  K   + + LS   + L  E    S R
Sbjct: 171 LLYLEKKIGAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLLWEGTYFSCR 228

Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296
           L    +PN+Q ++  +  DK++     +L+ A+ RV  ++   I A           +L 
Sbjct: 229 LTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGTFDFKGKQLV 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +        K  + + +           N KYL E +D IS + ++  +        NSS
Sbjct: 289 VKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVIIYGK--------NSS 340

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              R  ++             Y+LMP+ +
Sbjct: 341 SMFRVMEE-------GNEELIYILMPLAL 362


>gi|218678820|ref|ZP_03526717.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 894]
          Length = 148

 Score =  163 bits (414), Expect = 3e-38,   Method: Composition-based stats.
 Identities = 76/162 (46%), Positives = 103/162 (63%), Gaps = 14/162 (8%)

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
           S+++I + I S+ M+ +LIDG FP+YQ VIP  NDKE+RV+CT+  QAVDRVS +SS R 
Sbjct: 1   SDAKIRMTIGSIVMTSKLIDGTFPDYQRVIPTGNDKEMRVDCTSFAQAVDRVSTISSERG 60

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           +AVKL+LS  +L +TV+NPD G A E + V Y+   M+I FN KYLL+I   +S      
Sbjct: 61  RAVKLALSEGQLMLTVNNPDSGSATEEVAVGYDTDAMEIGFNAKYLLDITAQLSG----- 115

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +E +F L  + S   IR    D         +A YVLMPMR+
Sbjct: 116 EEAIFLLADAGSPTLIRDTAGD---------DALYVLMPMRV 148


>gi|257451968|ref|ZP_05617267.1| DNA polymerase III, beta chain [Fusobacterium sp. 3_1_5R]
 gi|317058517|ref|ZP_07923002.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R]
 gi|313684193|gb|EFS21028.1| DNA polymerase subunit III, beta [Fusobacterium sp. 3_1_5R]
          Length = 365

 Score =  163 bits (413), Expect = 4e-38,   Method: Composition-based stats.
 Identities = 79/389 (20%), Positives = 157/389 (40%), Gaps = 31/389 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK  ++R + + +L     I++  +  P+   + ++  +  L    S  E++    I   
Sbjct: 1   MKFKIKREEFISVLSDYTSILKENSIKPILSALFMEVKENELVFMGSSIEMDYRKQIQCE 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G++     L+ + ++ L++     +    +L   + I++G   F +    E  +P 
Sbjct: 61  GMEEGAVAFKPALVLEYIKLLEE----EWLTVEKLDGFLKIANG--EFAI--LEEENYPK 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +   ++  +     +E   F+ +       LN I     +E  K+  V+TD +R
Sbjct: 113 IVELASMSLLQIQGNEFAKYLETVKFSASQTPENLALNCIRVVFGKE--KINFVSTDSYR 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   E  I AQ  +  +I +P +AV  I+++L  K   + + LS   + L  E    S R
Sbjct: 171 LLYLEKKIRAQFER--AISLPLEAVNVIIKLLKEKTEVISLELSGENLLLLWEGTYFSCR 228

Query: 241 LIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIMSSVRIQAV---KLSLSSDKLC 296
           L    +PN+Q ++  +  DK++     +L+ A+ RV  ++   I A           +L 
Sbjct: 229 LTAVPYPNFQGILNQNFFDKKMEFCLEDLKAAMKRVITVAKTSIDAKYGGTFDFKGKQLI 288

Query: 297 MTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           +        K  + + +           N KYL E +D IS + ++  +        NSS
Sbjct: 289 VKAVTTGRAKTQQKVAMMKEGDDFIASLNCKYLSEFLDTISKNVIIYGK--------NSS 340

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
              R  ++             Y+LMP+ +
Sbjct: 341 SMFRVMEE-------GNEELIYILMPLAL 362


>gi|330719907|gb|EGG98379.1| DNA polymerase III beta subunit [gamma proteobacterium IMCC2047]
          Length = 168

 Score =  163 bits (412), Expect = 5e-38,   Method: Composition-based stats.
 Identities = 57/181 (31%), Positives = 105/181 (58%), Gaps = 14/181 (7%)

Query: 206 GEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
            E+ R+ S   + SVKV +S + I    ++ + + +L+DG+FP+YQ V+P ++DKE+ V 
Sbjct: 1   MELNRLFSGDSEGSVKVVMSSNHIRAVTDNFTFTSKLVDGKFPDYQQVVPKNSDKEMLVE 60

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
              L+Q ++R++I+S+ + + V+L + +D L +  +NP+  +A ES++V Y+   ++I F
Sbjct: 61  RELLKQVLNRIAILSNEKYRGVRLIVDNDLLQVFANNPEQEEAEESLSVKYDSESLEIGF 120

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N  YLL+++   SS       V      +NSS+ I             + ++ YV+MPMR
Sbjct: 121 NVSYLLDVLSVTSST-----NVKVSFADANSSILIEEI--------VERPDSLYVVMPMR 167

Query: 385 I 385
           +
Sbjct: 168 L 168


>gi|257437733|ref|ZP_05613488.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257200040|gb|EEU98324.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 221

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 56/233 (24%), Positives = 111/233 (47%), Gaps = 21/233 (9%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL- 212
           +    G  F I+ +  KL  VA DG+RLA+ E  + A   K   IIVP K + E+  +L 
Sbjct: 4   KPAHTGELFEISPD--KLTVVALDGYRLAIVERPVEA--IKEIRIIVPSKTMNEVSHLLA 59

Query: 213 SSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
           +  + +V +S +   +       ++  RLI+GEF NY NVIP  +   + ++     + +
Sbjct: 60  NDDEETVHISANRRYVVFTTAGYTIMSRLIEGEFLNYHNVIPNGSRTSVVLDTKEFIETI 119

Query: 273 DRVSIMSSVR-IQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLE 331
           +R S++ + R    +++S +  K+ +     ++G+ ++  N       ++I FN +YLL+
Sbjct: 120 ERASLIITERLKNPLRISFTEGKVVVRCQ-TNLGRVVDEFNAQCEGDEVEIGFNNRYLLD 178

Query: 332 IIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            + N  +     ++V   +    S V +   +           +  Y+++P+R
Sbjct: 179 ALRNART-----EQVKLEISGPLSPVKVLPTE---------GSDFLYLVLPVR 217


>gi|308189589|ref|YP_003922520.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
 gi|307624331|gb|ADN68636.1| DNA-directed DNA polymerase [Mycoplasma fermentans JER]
          Length = 368

 Score =  163 bits (412), Expect = 6e-38,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 169/391 (43%), Gaps = 31/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +++  + E L    +  +  N++     +L++ ++  +   AS   I I  ++   
Sbjct: 1   MKLHIKKQILDETLEIVSKYTDPINSLYGFRCILIKVDNEKVTFSASNGVISIVKSLDVE 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G+  + A++   I++KL +   +S     E  T + IS G+SN+ L + P 
Sbjct: 61  DVDIKVEETGTFLIQANIFKAIIKKLSETITLSQ----EYSTTLEISQGNSNYSLTTNPI 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           + FP  +E   +   E+ ++  K  +  T FA++ +    Y   I F       KL   A
Sbjct: 117 NSFPQIEENINLKRIEIDTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNN--KLNLTA 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLA   +D+ +         V  K V ++  I +     V +  +  +I +  ++ 
Sbjct: 174 TDAARLAYYTMDLKSSQVDNEEFSVNNKDVKDL--IPTDASKKVTLFFNRIKIGIEYKNT 231

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++ R++D  +P+ +++      + ++ +    +   +++V + +S +   ++ +++ ++
Sbjct: 232 VITSRIVDLPYPDVESLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNE 291

Query: 295 LCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + +     ++G +I ++ N  +     +   NY +L + +     D      V+   D S
Sbjct: 292 MTVLNRLNEIGTSIAKTENFKFEGKAFEFDINYHFLKDALSVFEGD------VLILFDKS 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + +           D+   +  ++ PMR
Sbjct: 346 VQKILVVS---------DSNKESKQLVTPMR 367


>gi|237740569|ref|ZP_04571050.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
 gi|229422586|gb|EEO37633.1| DNA polymerase subunit III [Fusobacterium sp. 2_1_31]
          Length = 364

 Score =  162 bits (411), Expect = 7e-38,   Method: Composition-based stats.
 Identities = 71/390 (18%), Positives = 168/390 (43%), Gaps = 33/390 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK ++ + +++ ++     I++     P    + ++  +  +  K +  E+E+      +
Sbjct: 1   MKFSINKENVIGIISEYTNILKDNPVKPSLAGLFIEVKNNQVVFKGANTEVELIRYANCN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++V G + +   LL + ++ L +   I+F K++       +   ++ F +    ++ +P 
Sbjct: 61  IEVEGQVLIKPSLLLEYIK-LVESEDINFEKKDG-----YLIVNNAEFSI--LDDTTYPE 112

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAM-ATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            KE       +  S     L+E+  F   ++  +    N I     +  ++L   +TD +
Sbjct: 113 IKELPSTTIAKENSLQFAMLLEKVKFLTNSSSNVDTLFNSIKLIFQDNFIEL--ASTDSY 170

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL   +  +   I K   I+VP  ++  I +IL   +  V ++  E ++ +  +    S 
Sbjct: 171 RLIYLKKSLENMINK--DILVPADSMSVIYKILKDLNEDVTLATIEDKLIVTWKDAYFSC 228

Query: 240 RLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSLSSDKL 295
           +L+   FP+++ +I  S +DK+   N   L  ++ +V  +   S+        +   ++L
Sbjct: 229 KLLSLSFPDFRPLITNSTHDKKFEFNRDELNSSLKKVISVTKNSNDSKNVATFNFKVNQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            ++  + +  K  + +N+      + +  N KY+ E IDN       D  ++    +S+S
Sbjct: 289 LISGMSSN-AKINQKVNMIKTGEDLKLGINCKYIKEFIDN------TDKNIIIEATNSSS 341

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            + I  +  +         N  Y++MP+ I
Sbjct: 342 MLKIIEEANE---------NYIYLVMPVNI 362


>gi|319776740|ref|YP_004136391.1| DNA polymerase iii beta subunit [Mycoplasma fermentans M64]
 gi|318037815|gb|ADV34014.1| DNA polymerase III beta subunit [Mycoplasma fermentans M64]
          Length = 368

 Score =  162 bits (410), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 169/391 (43%), Gaps = 31/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +++  + E L    +  +  N++     +L++ ++  +   AS   I I  ++   
Sbjct: 1   MKLHIKKQILDETLEIVSKYTDPINSLYGFRCILIKVDNEKVTFSASNGVISIVKSLDVE 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G+  + A++   I++KL +   +S     E  T + IS G+SN+ L + P 
Sbjct: 61  DVDIKVEETGTFLIQANIFKAIIKKLSETITLSQ----EYSTTLEISQGNSNYSLTTNPI 116

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           + FP  +E   +   E+ ++  K  +  T FA++ +    Y   I F       KL   A
Sbjct: 117 NSFPQIEENINLKKIEIDTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNN--KLNLTA 173

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLA   +D+ +         V  K V ++  I +     V +  +  +I +  ++ 
Sbjct: 174 TDAARLAYYTMDLKSSQVDNEEFSVNNKDVKDL--IPADASKKVTLFFNRIKIGIEYKNT 231

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++ R++D  +P+ +++      + ++ +    +   +++V + +S +   ++ +++ ++
Sbjct: 232 VITSRIVDLPYPDVESLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNE 291

Query: 295 LCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + +     ++G +I ++ N  +     +   NY +L + +     D      V+   D S
Sbjct: 292 ITVLNRLNEIGTSIAKTENFKFEGKAFEFDINYHFLKDALSVFEGD------VLILFDKS 345

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + +           D+   +  ++ PMR
Sbjct: 346 VQKILVVS---------DSNKESKQLVTPMR 367


>gi|238810154|dbj|BAH69944.1| hypothetical protein [Mycoplasma fermentans PG18]
          Length = 369

 Score =  161 bits (409), Expect = 1e-37,   Method: Composition-based stats.
 Identities = 71/391 (18%), Positives = 169/391 (43%), Gaps = 31/391 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+ +++  + E L    +  +  N++     +L++ ++  +   AS   I I  ++   
Sbjct: 2   MKLHIKKQILDETLEIVSKYTDPINSLYGFRCILIKVDNEKVTFSASNGVISIVKSLDVE 61

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G+  + A++   I++KL +   +S     E  T + IS G+SN+ L + P 
Sbjct: 62  DVDIKVEETGTFLIQANIFKAIIKKLSETITLSQ----EYSTTLEISQGNSNYSLTTNPI 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           + FP  +E   +   E+ ++  K  +  T FA++ +    Y   I F       KL   A
Sbjct: 118 NSFPQIEENINLKKIEIDTNEFKKAIRCTAFAVSQDASLVY-KCINFKFKNN--KLNLTA 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLA   +D+ +         V  K V ++  I +     V +  +  +I +  ++ 
Sbjct: 175 TDAARLAYYTMDLKSSQVDNEEFSVNNKDVKDL--IPADASKKVTLFFNRIKIGIEYKNT 232

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++ R++D  +P+ +++      + ++ +    +   +++V + +S +   ++ +++ ++
Sbjct: 233 VITSRIVDLPYPDVESLFASIDIENKIFIKKEEINDLINKVWLGTSDKQNRLEFTINKNE 292

Query: 295 LCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + +     ++G +I ++ N  +     +   NY +L + +     D      V+   D S
Sbjct: 293 ITVLNRLNEIGTSIAKTENFKFEGKAFEFDINYHFLKDALSVFEGD------VLILFDKS 346

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              + +           D+   +  ++ PMR
Sbjct: 347 VQKILVVS---------DSNKESKQLVTPMR 368


>gi|110589514|gb|ABG77266.1| DNA polymerase III beta-subunit DnaC [Endoriftia persephone
           'Hot96_1+Hot96_2']
          Length = 188

 Score =  161 bits (408), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 54/180 (30%), Positives = 112/180 (62%), Gaps = 2/180 (1%)

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGE 207
           MA +++RYYLNG+   I+   +K   VATDGHRLA +++  +        +I+PRKA+ E
Sbjct: 1   MAQQDVRYYLNGLLLEISNGIIK--TVATDGHRLAFSQIKAIENYELKTQLIIPRKAIIE 58

Query: 208 ILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTN 267
           + R+L   +++++  +S + + ++++    + +LIDG FP+Y+ VIP +N+ +L ++ + 
Sbjct: 59  LYRLLDESENTIRFEVSSNYVRVHLDRTIFTSKLIDGVFPDYEKVIPKNNENKLVMDKSE 118

Query: 268 LRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYK 327
           L++++ R SI+S+ + + +KL +  D++ +  +NP+  +A   +++ Y+   +   F  K
Sbjct: 119 LKKSLRRASILSNEKYKGIKLEIKEDRVQIIANNPEQEEAKIEIDLDYSRKGIKHRFKCK 178


>gi|302520515|ref|ZP_07272857.1| LOW QUALITY PROTEIN: DNA polymerase III beta subunit
           domain-containing protein [Streptomyces sp. SPB78]
 gi|302429410|gb|EFL01226.1| LOW QUALITY PROTEIN: DNA polymerase III beta subunit
           domain-containing protein [Streptomyces sp. SPB78]
          Length = 169

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 39/164 (23%), Positives = 70/164 (42%), Gaps = 5/164 (3%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           KI VER  + E +  A R +  +   PV   +LL+A +G L +     E+    ++ A  
Sbjct: 11  KIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLKAEEGTLSLSGFDYEVSARVSVEAET 70

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           +  G++ VS  LL DI R L +       + +  G    ++ G S F L + P  E+P+ 
Sbjct: 71  EEEGTVLVSGRLLADICRALPNRP----VEISTDGVRATVTCGSSRFTLHTLPVEEYPAL 126

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN 165
            +     +  +   V  +  ++   A   ++    L G+   I 
Sbjct: 127 PQMP-SATGTVPGEVFASAAQQVAIAAGRDDTLPVLTGVRIEIE 169


>gi|310816477|ref|YP_003964441.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25]
 gi|308755212|gb|ADO43141.1| DNA polymerase III subunit beta [Ketogulonicigenium vulgare Y25]
          Length = 377

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 93/394 (23%), Positives = 162/394 (41%), Gaps = 39/394 (9%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
            ++R  + + +    R +++   IP   ++ + +  G + ++A+  +  +T  + A    
Sbjct: 8   IIDRHALRKAMTSLQRTVQQWAAIPALKYISISSGLGEVTLRATDLDNLLTIKLEAETTG 67

Query: 64  CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS---FPESEFPS 120
                VSA +L      L  G        +  G +  I+  D    L+        +FP+
Sbjct: 68  TVPFLVSAEVLQKFA-SLAAGPVTVTRTPDIEGKDALITITDQETTLRLRERIQHDDFPT 126

Query: 121 TKEEE--YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
               +      F  + + L  +++ +   ++TEE RYYLNGI+     E   L AVATDG
Sbjct: 127 VPAWDMKDAARFTGSGAELSRILDLSRHCVSTEETRYYLNGIYLITAPERSTLRAVATDG 186

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSM 237
           HR+AV + +I A    +  +I PR A+     +L    ++ +K+   E+R  +  +   +
Sbjct: 187 HRMAVIDSNIEA--PNLAGVIFPRFALDVFRGLLDPKSNTPIKMQFEENRGIIEGDDWIL 244

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVN-CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC 296
             ++IDG FP+Y  VIP  ++     +    +     R+S      I A     S  K+ 
Sbjct: 245 HSKMIDGTFPDYTRVIPK-HETNCEAHFTRAIVTKAHRLSQAVRGHIAAAATITSDGKMH 303

Query: 297 MTVDNPDMGKAIESMNVYYNECP-MDI---CFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           +  +  D     ES++V     P  D+    FN KYL       +    V  E   R  +
Sbjct: 304 LMHEGED-----ESVSVPVGASPNFDLGRHGFNVKYL-------NKQAQVTPEFTLRAST 351

Query: 353 --SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
              N    I   D D          A ++LMPMR
Sbjct: 352 ERPNDPATIVSDDPD----------ACWILMPMR 375


>gi|254435683|ref|ZP_05049190.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus
           oceani AFC27]
 gi|207088794|gb|EDZ66066.1| DNA polymerase III beta subunit, C-terminal domain [Nitrosococcus
           oceani AFC27]
          Length = 171

 Score =  161 bits (407), Expect = 2e-37,   Method: Composition-based stats.
 Identities = 50/172 (29%), Positives = 90/172 (52%), Gaps = 14/172 (8%)

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
                V++    +++    + LS S +LIDG+FP+Y+ VIP   +K+   +    +QA+ 
Sbjct: 14  ESQEPVRLKFGTNQMRAEFQGLSFSTKLIDGQFPDYKRVIPVGCEKQFVADRERFKQALV 73

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I+++ + + V L LS  KL   V N + G A E +++ Y    ++I FN  YL++++
Sbjct: 74  RVNILTNDKYRGVHLHLSDLKLQAIVTNLEQGSAEEELDIKYQGENLEIVFNNFYLIDVL 133

Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + I +      EV     +++SS  I   D           ++ YV+MPMR+
Sbjct: 134 NIIDTK-----EVRLTFTNASSSCLITPIDA---------SDSKYVVMPMRL 171


>gi|289610240|emb|CBI60295.1| unnamed protein product [Sordaria macrospora]
          Length = 162

 Score =  160 bits (406), Expect = 3e-37,   Method: Composition-based stats.
 Identities = 64/154 (41%), Positives = 97/154 (62%)

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           VD      KMP +IVPRK V E+ ++L   D SV VSLS S+I  ++    ++ +LIDG 
Sbjct: 3   VDRPEGAEKMPDVIVPRKCVAELRKLLDEVDGSVGVSLSGSKIRFDLGQAILTSKLIDGT 62

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           FP+Y  VIP +NDK L+++  +    VDRVS +++ + +AVK++L  DK+ ++V +P+ G
Sbjct: 63  FPDYSRVIPTANDKLLKLDPKSFMAGVDRVSTIATEKTRAVKMALDRDKITLSVTSPENG 122

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSD 339
            A E +   Y   P +I FN +YLL+I+  I SD
Sbjct: 123 AAAEEVPGEYAALPFEIGFNSRYLLDILGQIDSD 156


>gi|261749644|ref|YP_003257330.1| DNA polymerase III subunit beta [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
 gi|261497737|gb|ACX84187.1| DNA polymerase III, beta subunit [Blattabacterium sp. (Periplaneta
           americana) str. BPLAN]
          Length = 382

 Score =  160 bits (404), Expect = 5e-37,   Method: Composition-based stats.
 Identities = 78/401 (19%), Positives = 160/401 (39%), Gaps = 43/401 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE---IEITGAI 57
           M  +V    +L+ L    +II  K ++        +     L I  S  E   +     +
Sbjct: 1   MHFSVSSFSLLQELYFLHKIINTKYSL-----FKFKIFGKKLVIMVSDSENHLVTAEIQV 55

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
                    I +   L+ +I++   +       ++N     +NI     ++ +       
Sbjct: 56  YVKKTSEEKIAIHPKLMIEILKTFPNETIFIKKEKNT----LNIYSEQGDYPIPIICHEN 111

Query: 118 --------FPSTKEEEY--VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
                   F S +  E   +    L S +L  ++ +T FA   EEI+  +NG+FF  + +
Sbjct: 112 KNRHHLTIFSSMENFEKGKILKITLFSKILLKILNKTLFATGNEEIKPVMNGVFFRFSPK 171

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
                 VATD ++L    +    +  +    I+ RK++  +  IL ++  SV +   ++ 
Sbjct: 172 GATF--VATDTYKLVKYTLK-NIKSNQYIEFIISRKSLRILKNILFNEKKSVTIEYKKTG 228

Query: 228 IH-LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           I   + E+ +    LI+ ++P+Y +V P   D    +N      ++ R+S+ S      +
Sbjct: 229 ILKFSFETKTFLCELINEKYPDYNSVFPKKKDISFIINRLFFLNSIKRISLFSKEETNFI 288

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYY------NECPMDICFNYKYLLEIIDNISSDE 340
           + +LS + L +  +N  +      +   Y      +E  + + FN K+L+EI+ +     
Sbjct: 289 RFNLSDNTLRIYEENTRI-SIFSKIRCKYIAEYFRDESIIKMGFNSKFLIEILSSFK--- 344

Query: 341 VVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
             +D V F L SSN     +       ++   + +   ++M
Sbjct: 345 --EDFVSFELYSSNRMGIFKP-----FSSSKKEESTLILIM 378


>gi|330883328|gb|EGH17477.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. glycinea
           str. race 4]
          Length = 206

 Score =  159 bits (403), Expect = 6e-37,   Method: Composition-based stats.
 Identities = 56/178 (31%), Positives = 99/178 (55%), Gaps = 2/178 (1%)

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200
           +          +  YYLNG+   ++   L+  AVATDGHRLA+  +    + A    +IV
Sbjct: 31  ISIRRKVTRDSQNSYYLNGMLLEVSAGILR--AVATDGHRLAMCSMSADIEHADRHQVIV 88

Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
           PRK + E+ R+L+ +D  V + L +  I       + + +L+DG+FP+Y+ V+P   DK 
Sbjct: 89  PRKGILEMARLLTEQDGMVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKL 148

Query: 261 LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318
           +  +   LR+A  R +I+S+ + + ++L L+S +L +  +NP+  +A E ++V YN  
Sbjct: 149 VLGDRQALREAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYNGD 206


>gi|149200629|ref|ZP_01877632.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155]
 gi|149136278|gb|EDM24728.1| DNA polymerase III, beta subunit [Lentisphaera araneosa HTCC2155]
          Length = 209

 Score =  159 bits (403), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 57/229 (24%), Positives = 110/229 (48%), Gaps = 23/229 (10%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD 216
           + G+   I   D     VATDG R+A+ E  I +  +     I+P KA  E+ ++L    
Sbjct: 1   MTGLLLTIT--DGTFTTVATDGRRMALVETVIGSDSSLDSDSILPLKAAQELPKVLEGS- 57

Query: 217 SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
           S VKVSL ++    + + +    +L++G FPNY+ V+P   +  + +       A+DRVS
Sbjct: 58  SDVKVSLGDTHAVFSTDDVVFQTKLLEGNFPNYRMVMPPGFENHVTMPRDEFYSALDRVS 117

Query: 277 IMSSVRIQAVKLSLSSDKLCMTV-DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
            +   +  AVKLSL+  ++ ++  +N ++ ++   +   Y    +D+ FN  +L++ + +
Sbjct: 118 QIL-DKNPAVKLSLTPTEVLISAMNNAEVAES--PIPASYEGENLDLSFNASFLIDPLRH 174

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  ++     +  R +   S   + G +              YV+MP+R
Sbjct: 175 LECNK-----LTLRFNDRLSPTGLYGDE-----------GFLYVIMPLR 207


>gi|148927259|ref|ZP_01810830.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1]
 gi|147887345|gb|EDK72798.1| DNA-directed DNA polymerase [candidate division TM7 genomosp. GTL1]
          Length = 202

 Score =  159 bits (402), Expect = 7e-37,   Method: Composition-based stats.
 Identities = 56/211 (26%), Positives = 101/211 (47%), Gaps = 11/211 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+TV + ++ + L    R+   K  +P+  ++LL+ ++  L + A+  EI IT  I A 
Sbjct: 1   MKLTVTQENLTKALNGVGRVASGKTPLPILNNILLRTDNNRLVVAATNLEIAITEHIGAK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G+ITV A L+ + +  L  G      +    G  ++I+ G  +  +      EFP 
Sbjct: 61  VAKNGAITVPARLMAEFISNLPKGNVELSVE----GAHLHIAAGAYSSTINGMEAEEFPE 116

Query: 121 TKEEEYVYSF--ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
                   +   E+ + V+K  V +T    +++  R +L G++ H  E D  L   ATDG
Sbjct: 117 LPTINESEAIKYEIPTDVMKRAVAQTVVTTSSDMTRPFLTGVYCHSFEGD--LYFAATDG 174

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209
           +RL+  ++  + +  K    IVP   + ++L
Sbjct: 175 YRLSERKIGAMKEDLK---AIVPASTLQDVL 202


>gi|324323932|gb|ADY24975.1| DNA polymerase III subunit beta [Bacillus thuringiensis serovar
           finitimus YBT-020]
          Length = 394

 Score =  158 bits (401), Expect = 1e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 157/378 (41%), Gaps = 29/378 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV   G++ V    + D+ +KL          +N     + +  G S F L +F  S
Sbjct: 61  EDVSVISEGTVLVE-KKIVDVAKKLTKEPIKLKLSKNT----LQVISGKSKFTLNTFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +    +K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              + ++G++P+    ++    +  + VN   + +A++++ + +S +   +  +L+++ +
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291

Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            +  +    G A      E +      V   +  +   FN + L   I  I+ D      
Sbjct: 292 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346

Query: 346 VVFRLDSSNSSVFIRGKD 363
           +    +     + I  +D
Sbjct: 347 ISIGFNGEKKPISIVHED 364


>gi|229113628|ref|ZP_04243075.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
 gi|228669824|gb|EEL25220.1| DNA polymerase III, beta subunit [Bacillus cereus Rock1-15]
          Length = 418

 Score =  157 bits (398), Expect = 2e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 157/378 (41%), Gaps = 29/378 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 25  MHIEISKSKLVESLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 84

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV   G++ V    + D+ +KL          +N     + +  G S F L +F  S
Sbjct: 85  EDVSVISEGTVLVE-KKIVDVAKKLTKEPIKLKLSKNT----LQVISGKSKFTLNTFKVS 139

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 140 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLITFQ--ST 197

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +    +K  S+K+S  ++   L+ ++ +
Sbjct: 198 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDTK-KSIKLSKLDNTFILSSDTET 256

Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              + ++G++P+    ++    +  + VN   + +A++++ + +S +   +  +L+++ +
Sbjct: 257 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 315

Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            +  +    G A      E +      V   +  +   FN + L   I  I+ D      
Sbjct: 316 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 370

Query: 346 VVFRLDSSNSSVFIRGKD 363
           +    +     + I  +D
Sbjct: 371 ISIGFNGEKKPISIVHED 388


>gi|134122662|dbj|BAF49636.1| DnaN [Microcystis viridis NIES-102]
          Length = 181

 Score =  157 bits (398), Expect = 3e-36,   Method: Composition-based stats.
 Identities = 46/193 (23%), Positives = 102/193 (52%), Gaps = 18/193 (9%)

Query: 197 SIIVPRKAVGEILRILSSKD--SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
           ++ +P +A+ E+ R++++K    ++ + + +S++   +    ++ R ++G +P Y  +IP
Sbjct: 1   NVTIPARALRELERMMATKQNIETITLHVDDSQVIFEMGEQRLTSRKLEGAYPTYNQLIP 60

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMN 312
            S D+ L ++   L + ++ V+++S  +   VK SL   +D+L + V++PD+G A ESM 
Sbjct: 61  KSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMA 120

Query: 313 VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDN 372
                   DI FN KYL++ +  + +++     +  +L++S   V               
Sbjct: 121 AEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQLNASTQPVIFTP---------LG 166

Query: 373 KVNAFYVLMPMRI 385
            +   Y++MP++I
Sbjct: 167 GLKMTYLVMPVQI 179


>gi|229125330|ref|ZP_04254425.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
 gi|228658129|gb|EEL13874.1| DNA polymerase III, beta subunit [Bacillus cereus 95/8201]
          Length = 394

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 156/378 (41%), Gaps = 29/378 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV   G++ V    + D+ +KL          +N     + +  G S F L +F  S
Sbjct: 61  EDVSVIAEGTVLVE-KKIVDVAKKLTKEPIKLKLSKN----ILQVISGKSKFTLNTFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +     K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              + ++G++P+    ++    +  + VN   + +A++++ + +S +   +  +L+++ +
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291

Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            +  +    G A      E +      V   +  +   FN + L   I  I+ D      
Sbjct: 292 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346

Query: 346 VVFRLDSSNSSVFIRGKD 363
           +    +     + I  +D
Sbjct: 347 IAIGFNGEKKPISIVHED 364


>gi|300790639|ref|YP_003770930.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
 gi|299800153|gb|ADJ50528.1| DNA polymerase III subunit beta [Amycolatopsis mediterranei U32]
          Length = 353

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 67/383 (17%), Positives = 143/383 (37%), Gaps = 33/383 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +T     +   +  A R++  +        + L+A    L +     ++ +    PA+
Sbjct: 1   MDVTAPAHRLSAAVSAASRLLPAR------AGLRLEAAAAGLTVAGVASDLAVRFGCPAT 54

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS+ V A  L + ++ L D   +    E   G+ + +   ++ F L   PES    
Sbjct: 55  THTDGSVVVPAAPLVETLKVL-DTELVRLVVE---GSRLALRLDNARFALPLLPES---G 107

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
              +      E+  +   + +       A ++      G+        L L   A+D +R
Sbjct: 108 AVSDPPAKVSEVDGAAFASALRIVAGTAAKDDPLPLFTGVRVQAAGAGLTL--TASDRYR 165

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           +AVA + +         ++VP   + E  R        V + +   R  ++     ++  
Sbjct: 166 MAVARLPL--SSPGSLDVLVPAALLSEAARQAR---GRVGLHVGPGRFGVSWPEGLVATA 220

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD 300
           ++D  F +  ++   + D  + +    L  AV RV + +  R + + L +   ++ +   
Sbjct: 221 VLDAGFLSEDSIPSGTVDTTVSLPADALAAAVRRVGVYAEDR-RVLTLEVGDAQVRLASA 279

Query: 301 NPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIR 360
             D G+A E++    +       F  +YLL+ +   +      ++VV  +     +  +R
Sbjct: 280 RQDTGEAEETLKADVSGGRTSPSFQARYLLDALAAFAG-----EQVVLSIQPGMRACILR 334

Query: 361 GKDKDSKNNKDNKVNAFYVLMPM 383
             +         +V   Y LMPM
Sbjct: 335 AAEP-------GEVALAYYLMPM 350


>gi|118588967|ref|ZP_01546374.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
 gi|118438296|gb|EAV44930.1| DNA polymerase III subunit beta [Stappia aggregata IAM 12614]
          Length = 398

 Score =  156 bits (396), Expect = 4e-36,   Method: Composition-based stats.
 Identities = 88/399 (22%), Positives = 160/399 (40%), Gaps = 44/399 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I     ++   L      I+R++T+P+   VL++  DG +   A+  ++EI       
Sbjct: 1   MLIETTAGELKTALMSVKPAIQRRSTLPILSAVLIE--DGAVI--ATDLDMEIRVKFAVK 56

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               GS  +  + LYD+VR L     +           V ++     ++L S+   ++P 
Sbjct: 57  -KCEGSAVIPFNQLYDLVRLLPADRSVRLQDTEYKNGGVFVTFQGGRYFLPSYSVVDYPR 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               E V        +L   +E     M+TEE RYYLNG+ F  +++D  +  VATDGHR
Sbjct: 116 FSMPEDVREIASPQGLL-VALEACQSFMSTEETRYYLNGVCFGRDKDDTGV-LVATDGHR 173

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI-ESLSMSV 239
           L   +       +     I+PR  +  +LR+        KV L E ++   +     +  
Sbjct: 174 LIAHDYAHDCDGSP----ILPRAMIVALLRLC----EPEKVLLHEQKMEFVLPGGGYLRC 225

Query: 240 RLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQA-------VKLSL 290
           +LIDG FP++Q V+P        L      +   ++R+ +    R +A       +  + 
Sbjct: 226 KLIDGTFPDWQRVVPTIPPGSPRLFFEPLEMVSILNRLELGRGCRKRAGASFCVDIATNA 285

Query: 291 SSDKLCMTVDNPDMGKAIESMN----VYYNECPMDI-CFNYKYLLEIIDNISSDEVVDDE 345
           + D   ++ +     +  E +     + + +    I   N  Y+ E    +       D+
Sbjct: 286 AGDLAIVSSEGMGGEECAERIESGRAIDWTKLSGGIWSGNSGYIKE----LCRLNFSADQ 341

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V    + S +   +R ++            A  V+MPMR
Sbjct: 342 VELTAEGSGTPTVMRHEES----------KALMVIMPMR 370


>gi|237728525|ref|ZP_04559006.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2]
 gi|226910003|gb|EEH95921.1| DNA polymerase subunit III beta [Citrobacter sp. 30_2]
          Length = 382

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 76/396 (19%), Positives = 159/396 (40%), Gaps = 45/396 (11%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGP---EIEITGAIPASVDVCGSITVSAHLLYD 76
           +I R   + V   + L+     L          +I   G + A V+    ++V +  L+ 
Sbjct: 2   VIRRSPAMKVLEMITLRLRGDCLSALGIDLNSAQITSKGTVSA-VNGDMDVSVPSTQLFS 60

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES-EFPSTKEEEYVYSFELASS 135
           ++R ++   +I+  + +     + I    +++ +    +       +  E+ YS    + 
Sbjct: 61  LIRNMRGEDEIN-VRFHAAKNHLVIRTDKNSYNIPVCLDHIPEIQVETLEHNYSVYFPTQ 119

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA-- 193
           +L  +++R   A A  ++R+Y+NG++  I  ++ +  AVATDGHR+AV+  DI       
Sbjct: 120 MLSQIIKRVSHAAAQNDVRHYMNGVYLGI--DNGQFIAVATDGHRMAVSSHDIDFSDDVS 177

Query: 194 --------------KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
                             +I+P   +  + +ILS      K+  S   +   + S ++  
Sbjct: 178 DEIQYPTAPTSISNTNAGVILPNGVLPVLHKILSGSQGQFKIDYSNRNLAFTLGSHTVIS 237

Query: 240 RLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIM----SSVRIQAVKLSLSSD 293
            L+DG +P+++ V           +VN + L  A+ R + +    S        +S   +
Sbjct: 238 NLVDGRYPDWKRVASTVAKNTELFKVNPSELTTALKRATPLLKEGSPNNTSVCVMSFKDN 297

Query: 294 KLCMTVDNPDMGKAIESMNVYYN-ECP---MDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
            L +     +     E M++      P   +DI  N  YLLE + ++ +     + V   
Sbjct: 298 ALQLKSPGTNAISCKEVMDIAKEAGKPEAMVDIGMNADYLLESLASLGACSEEGEAVQIA 357

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L  + + + I               N + ++MP+R+
Sbjct: 358 LRDTTTGILI-----------SVNKNIYDIIMPVRV 382


>gi|229051325|ref|ZP_04194839.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
 gi|228722018|gb|EEL73449.1| DNA polymerase III, beta subunit [Bacillus cereus AH676]
          Length = 394

 Score =  156 bits (395), Expect = 5e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 156/378 (41%), Gaps = 29/378 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV   G++ V    + D+ +KL          +N     + +  G S F L +F  S
Sbjct: 61  EDVSVIAEGTVLVE-KKIVDVAKKLTKEPIKLKLSKN----ILQVISGKSKFTLNTFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +     K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEIKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              + ++G++P+    ++    +  + VN   + +A++++ + +S +   +  +L+++ +
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291

Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            +  +    G A      E +      V   +  +   FN + L   I  I+ D      
Sbjct: 292 SIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346

Query: 346 VVFRLDSSNSSVFIRGKD 363
           +    +     + I  +D
Sbjct: 347 IAIGFNGEKKPISIVHED 364


>gi|218291395|ref|ZP_03495338.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1]
 gi|218238750|gb|EED05966.1| DNA-directed DNA polymerase [Alicyclobacillus acidocaldarius LAA1]
          Length = 249

 Score =  156 bits (394), Expect = 7e-36,   Method: Composition-based stats.
 Identities = 55/239 (23%), Positives = 110/239 (46%), Gaps = 7/239 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +E+  +   L    RI + +    V   VL++A  G + + A   ++ +   + AS
Sbjct: 1   MRCLMEQQVLEPALSALARIAQTRAPAAVLQGVLIEAERGRVTLSAYDYDVALRMTVEAS 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V   G + + A L  ++VR+L  G  +            +I  G ++  L  F  +EFP 
Sbjct: 61  VVDPGGVVLPAKLFAELVRRLPKGT-VDIATIAPHHLSASIDVGTTHAELHGFDPAEFPV 119

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEE-IRYYLNGIFFHINEEDLKLCAVATDGH 179
             +   +   E+++  L   ++   +A A ++  R  L G++  +  ED KL  +ATDG 
Sbjct: 120 LPDMTGIAPVEISAKTLVEAIQSVGYAAAKQDASRPILEGVY--VGYEDGKLIWMATDGL 177

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSM 237
           RLA     +  +++      +PR+A+ E+ R+L    D++++V  S + +      + +
Sbjct: 178 RLAKVSQTVDREMS--IRCTIPRRALTELTRLLDADDDATLQVYQSVNYVLFAWNGVKL 234


>gi|296506465|ref|YP_003667699.1| DNA polymerase III subunit beta [Bacillus thuringiensis BMB171]
 gi|296327052|gb|ADH09979.1| DNA polymerase III, beta subunit [Bacillus thuringiensis BMB171]
          Length = 394

 Score =  155 bits (393), Expect = 9e-36,   Method: Composition-based stats.
 Identities = 69/378 (18%), Positives = 155/378 (41%), Gaps = 29/378 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M I + +S ++E L    +   +    P+   +L+ A    L   A+  +  I   +   
Sbjct: 1   MHIEISKSKLVENLSSVVKFAGKDKKEPILESILIVAETDKLRFIATNSKETIERIVFCD 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
              SV   G++ V    + D+ +KL          +N     + +  G S F L  F  S
Sbjct: 61  EDVSVIAEGTVLVE-KKIVDVAKKLTKEPIKLKLSKN----ILQLISGKSKFTLNIFKVS 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           ++P  K  +  Y  ++  S+L+  +    +A +T   R  L GI   ++E  +     +T
Sbjct: 116 DYPVIKPSQAEYFADIECSILEEAINSVCYAASTSNQRPILKGIHLTVSENLMTFQ--ST 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D H+LA   + +     +   + +P  A+ E +     K  S+K+S  ++   L+ ++ +
Sbjct: 174 DSHQLAYKAIKLQTAFKEEFKMTIPAIALKEAINSFDIK-KSIKLSKLDNTFILSSDTET 232

Query: 237 MSVRLIDGEFPNY-QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              + ++G++P+    ++    +  + VN   + +A++++ + +S +   +  +L+++ +
Sbjct: 233 FRTQTLEGDYPDVLVRLLSPLYENVILVNKREILEALEQIMLFTSNKPTGI-FTLNNNAI 291

Query: 296 CMTVDNPDMGKAI-----ESMN-----VYYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
            +  +    G A      E +      V   +  +   FN + L   I  I+ D      
Sbjct: 292 TIENEEKSEGNAQILIQTEDITTPDPSVKPEDSIIKFGFNVQLLYTSIKVINCDL----- 346

Query: 346 VVFRLDSSNSSVFIRGKD 363
           +    +     + I  +D
Sbjct: 347 ISIGFNGEKKPISIVHED 364


>gi|153831483|ref|ZP_01984150.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39]
 gi|148873034|gb|EDL71169.1| DNA polymerase III beta subunit, C- domain [Vibrio cholerae 623-39]
          Length = 144

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 45/157 (28%), Positives = 87/157 (55%), Gaps = 14/157 (8%)

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL 288
              +     + +L+DG FP+Y+ V+P    K L+  C  LRQA  R +I+S+ + + V++
Sbjct: 2   RAEVNHFVFTSKLVDGRFPDYRRVLPQHTSKTLQTGCEELRQAFSRAAILSNEKFRGVRV 61

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           +L+ +++ +T +NP+  +A E ++V +   P++I FN  Y+L++++ +       D V  
Sbjct: 62  NLADNEMRITANNPEQEEAEELLDVSFEGEPIEIGFNVSYILDVLNTLRC-----DNVRV 116

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            +  +N+S  +   D DS         A YV+MP+R+
Sbjct: 117 SMSDANASALVENVDDDS---------AMYVVMPIRL 144


>gi|24209792|gb|AAN39856.1| DnaN protein [Salmonella enterica subsp. enterica serovar Agona]
 gi|24209794|gb|AAN39857.1| DnaN protein [Salmonella enterica subsp. enterica serovar
           Enteritidis]
 gi|24209810|gb|AAN39865.1| DnaN protein [Salmonella enterica subsp. enterica serovar Typhi]
          Length = 167

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 61/173 (35%), Positives = 98/173 (56%), Gaps = 7/173 (4%)

Query: 51  IEITGAIPASV-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109
           +E+   +  S     G+ TV A   +DI R L +GA+I+   E   G  + +  G S F 
Sbjct: 1   MEMVARVTLSQPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFS 57

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
           L + P ++FP+  + +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L
Sbjct: 58  LSTLPAADFPNLDDWQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSEL 117

Query: 170 KLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS 222
           +   VATDGHRLAV  + + A +    S+IVPRK V E++R+L   ++ ++V 
Sbjct: 118 R--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQ 167


>gi|1706498|sp|P52620|DPO3B_VIBHA RecName: Full=DNA polymerase III subunit beta
 gi|1006570|gb|AAA78258.1| DNA polymerase III holoenzyme beta subunit [Vibrio harveyi]
          Length = 145

 Score =  155 bits (392), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 46/148 (31%), Positives = 78/148 (52%), Gaps = 4/148 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ERS +++ L      +  + T+P+  ++LL+  D +L + A+  E+E+   +   
Sbjct: 1   MKFTIERSHLIKPLQQVSGALGGRPTLPILGNLLLKVEDNVLSMTATDLEVELVSKVTLE 60

Query: 61  VD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            D   GSITV +    DI R L D + I+F  E   G  V +  G S F L + P ++FP
Sbjct: 61  GDFEAGSITVPSRKFLDICRGLPDDSIITFVLE---GDRVQVRSGRSRFSLATLPANDFP 117

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFA 147
           + ++ +      L  S L+ L+E+T F+
Sbjct: 118 NIEDWQSEVEVSLTQSDLRTLIEKTQFS 145


>gi|126143269|gb|ABN80081.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 196

 Score =  155 bits (391), Expect = 1e-35,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 120/204 (58%), Gaps = 8/204 (3%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+     + +  L  VATDG+RLA+ ++ +   I    S+I+PRK + E+ R+L+
Sbjct: 1   RYYLNGMLLE--KNNTFLRTVATDGYRLAITKIFLKKDII-PFSVIIPRKGILELYRLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            +   + + + ++ I ++I  L  + +LI+G++P+Y++++     + + +NC  L++++ 
Sbjct: 58  IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESILINIKKEPIILNCQLLKKSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I+S  +   +++ +  ++L +  DN +   A +  N+ Y+   + +  N  Y+++++
Sbjct: 118 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 177

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + I+S     + +   L+ SN+S+
Sbjct: 178 NTITS-----ENIFLYLNESNNSI 196


>gi|156028374|gb|ABU42566.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 197

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 53/204 (25%), Positives = 119/204 (58%), Gaps = 7/204 (3%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+     + +  L  VATDG+RL + ++ +   I    S+I+PRK + E+ R+L+
Sbjct: 1   RYYLNGMLL--KKNNTFLYTVATDGYRLGITKIFLQKDIIIPFSVIIPRKGILELYRLLN 58

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            +   + + + ++ I ++I  L  + +LI+G++P+Y+++I     + + +NC  L++++ 
Sbjct: 59  IQKQLIHILIGKNNIRIHIGDLIFTTQLIEGKYPDYESIIIIIKKEPIILNCQLLKKSLL 118

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I+S  +   +++ +  ++L +  DN +   A +  N+ Y+   + +  N  Y+++++
Sbjct: 119 RVAILSHEKFCGIEMHIKHNQLQVFSDNQEEETAEDKFNINYSGKTIKMSMNVYYIIDVL 178

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + I+S     + +   L+ SN+S+
Sbjct: 179 NTITS-----ENIFLYLNESNNSI 197


>gi|298294438|ref|YP_003696377.1| DNA polymerase III subunit beta [Starkeya novella DSM 506]
 gi|296930949|gb|ADH91758.1| DNA polymerase III, beta subunit [Starkeya novella DSM 506]
          Length = 406

 Score =  154 bits (390), Expect = 2e-35,   Method: Composition-based stats.
 Identities = 79/338 (23%), Positives = 145/338 (42%), Gaps = 31/338 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK+  ER+ +L  L     + ++KN IP+  HV L+    LL + A+  +      IPA 
Sbjct: 1   MKLIAERTHLLAALKTVGHLAQKKNPIPLLRHVRLRTVGRLLFVAATDQDAYAEAEIPAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  GS T+ A +L  +V    DG+Q+       L T   I  G S +     P  +FP+
Sbjct: 61  VERQGSTTIDADVLQRMVNNFADGSQVYIDAGEALAT---IKAGRSRYQPPVLPADDFPA 117

Query: 121 T--KEEEYVYSFE-LASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
               +E+    F  +   V + LV     A   +  +  L G++ H +++D  L A ATD
Sbjct: 118 MFAPKEKDAARFTLMPEEVKRLLVVPRPAAPKGQADKQQLEGVYLHTSDDDRTLWAAATD 177

Query: 178 GHRLAVAEVDIVAQIAKMPSII--------------VPRKAVGEILRILSSKDSSVKVSL 223
           G     A++      AK+P ++              VP  AVG ++++    ++ +++  
Sbjct: 178 GLTFIAADIPAPEGAAKLPKLVEPGEHGAGRPRGLMVPMDAVGHLIKL---GENGLEIEA 234

Query: 224 SESRIHLNIE------SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSI 277
             + +            +S + RLID  FP Y+  +P      + V       A+ R++ 
Sbjct: 235 DTNVLAARAGLPSSAVKVSYATRLIDNRFPPYERFLPPLEGVSILVEAGAFADAIKRLAD 294

Query: 278 MSSVRIQAVKLSL-SSDKLCMTVDNPDMG-KAIESMNV 313
           M+    + + +       L + +D+   G    E++++
Sbjct: 295 MAGNEERPIAIEWEEEGDLSLWLDDHADGIYGTETIDI 332


>gi|213423088|ref|ZP_03356106.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 131

 Score =  153 bits (388), Expect = 3e-35,   Method: Composition-based stats.
 Identities = 41/134 (30%), Positives = 67/134 (50%), Gaps = 4/134 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 STKEEEYVYSFELA 133
           +  + +    F L 
Sbjct: 118 NLDDWQSEVEFTLP 131


>gi|313635491|gb|EFS01728.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067]
          Length = 196

 Score =  153 bits (386), Expect = 5e-35,   Method: Composition-based stats.
 Identities = 43/205 (20%), Positives = 100/205 (48%), Gaps = 14/205 (6%)

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           + E+ +   I +  +I++P K++ E+ +IL     S++++L+ ++I   ++ L    RL+
Sbjct: 1   LREIPLETDIDEEYNIVIPGKSLAELNKILDDASESIEMTLANNQILFKLKDLLFYSRLL 60

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDKLCMTVD 300
           +G +P+   +IP     EL +N     QA+DR S+++      V   ++L + ++ ++ +
Sbjct: 61  EGSYPDTSRLIPTDTKSELVINSRAFLQAIDRASLLARENRNNVIKLITLDNGQVEVSSN 120

Query: 301 NPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +P++G   E++    +    + I FN KY+++ +          D++      +     +
Sbjct: 121 SPEVGNVSENVFSQSFTGEEVKISFNGKYMMDALRAFEG-----DDIQISFSGTMRPFVL 175

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
           R KD  + N          ++ P+R
Sbjct: 176 RPKDATNPNE------ILQLITPVR 194


>gi|30171300|gb|AAP20074.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|30171304|gb|AAP20076.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 217

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 69/223 (30%), Positives = 124/223 (55%), Gaps = 7/223 (3%)

Query: 45  KASGPEIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISH 103
            A+  E E+   I  S     GSITVS   L +I R   + + I      E   +++IS 
Sbjct: 1   TATNLETELISNIEISKTYTPGSITVSGQKLLNICRNSSELSDIKISLNKE---KIHISL 57

Query: 104 GDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFH 163
            +SN+ L + P   FP+    ++V  F ++S +LK ++E+THF+M  +++RYYLNG+   
Sbjct: 58  ENSNYILNTLPAENFPNHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLE 117

Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
             +    L  VATDG+RL +A+  +   +  + S I+PRK + E+ ++L+ +   + V +
Sbjct: 118 --KNKTSLYTVATDGYRLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLI 174

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCT 266
            ++ I + IE L  +V+LI+GE+P+Y++++       + +N  
Sbjct: 175 GKNNIKIYIEKLIFTVQLIEGEYPDYKSILSRKKQHPIILNNK 217


>gi|260062690|ref|YP_003195770.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501]
 gi|88784257|gb|EAR15427.1| DNA polymerase III subunit beta [Robiginitalea biformata HTCC2501]
          Length = 362

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 70/384 (18%), Positives = 150/384 (39%), Gaps = 31/384 (8%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           I +    +L  L     +I   NT+PV  HV ++   G + + AS  E   +    A   
Sbjct: 4   IEINSRALLGQLNRLSGLI--NNTLPVLSHVKVETQKGHVFMTASNLETTASVLFEAKCK 61

Query: 63  VCGSIT-VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
             GSIT +  + L  I++ L D       + + +     I  GD+++ L   P  +FP  
Sbjct: 62  -PGSITCIPHNTLSSILKNLPDAPVSITIESDGVIQNAEIVCGDADYKLPGLPPDDFPRI 120

Query: 122 KEEEYVYSFELASSVLKNLVE-RTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            E  +    EL ++     ++  T F   T+E+  + N I    + E   L  +A   H 
Sbjct: 121 AEHPWEEKIELEAAHFLQTLKTATRFTDQTDELSGFQNIIL---DAESGYLEVMAMTRHL 177

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L   ++    +  K   ++V  KA   +     + +  +K+S +++ + +  +++++ VR
Sbjct: 178 LFKRQIT---KAKKKFMMMVTTKAATYLASGAFTSEK-IKLSEAKNMLLITGDNIAVHVR 233

Query: 241 LIDGEFPNYQNVIPCSNDKE-LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
             + + P YQ +      +     N   L+  + R+      R       +  D+  + +
Sbjct: 234 QPEWKPPQYQLLFSKDRVQHGWEANTEELKTKLSRLLSACQSRFAIADFDMKKDRTTLKI 293

Query: 300 DNPDMGK-AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           ++        E +        + +    +Y +  +  ++   V ++ V     ++N++ F
Sbjct: 294 EDEAYATRGQEIVPAELTGSAVKV----RYQIATL-QLALSVVEEERVKLEFQAANTATF 348

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMP 382
           I            +  N   ++MP
Sbjct: 349 I------------DTENTKMLVMP 360


>gi|47458837|ref|YP_015699.1| DNA polymerase III beta chain [Mycoplasma mobile 163K]
 gi|47458165|gb|AAT27488.1| DNA polymerase III beta chain [Mycoplasma mobile 163K]
          Length = 369

 Score =  150 bits (380), Expect = 3e-34,   Method: Composition-based stats.
 Identities = 73/394 (18%), Positives = 165/394 (41%), Gaps = 35/394 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MKI   R  + ++L      I+  N  P    +    N+    I +S  ++ I   I   
Sbjct: 1   MKIKSNRRTLEKILDIFNPTIDSTNPFPALLGLYFDVNESTTTIISSNGDVSIKHKIVSN 60

Query: 58  -PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               +   G + + + L  +I++K+     I        G  + + +  + + +      
Sbjct: 61  ENFKIIEPGILLIPSSLFRNIIKKIDGEVFIR-----NEGLILYLENEGNIYTINCLESE 115

Query: 117 EFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAV 174
            +P             + SS ++++++   FA ++ E     L+G+ F++N    K+ A 
Sbjct: 116 NYPKIDFNLIDHKKVVINSSFIRDVIKNVSFASSSSETNNLVLSGVNFNLNLN--KIIAT 173

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           ATD  RLA      +       +I +  K + ++   L+S    V++ + E +I++  E+
Sbjct: 174 ATDSFRLAQESSSTLTN--GDFNITITAKNLRDLFSNLNS--EKVELLIDEYKINIIDEN 229

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
                +LI+  + +   +IP + +K+L +    L   +++  ++ + R  A+ +S+S+++
Sbjct: 230 TIFQAKLINMPYIDVTKIIPKNFEKKLYIEKRVLNNYLNKAMVVLNERYSAIDVSISNEE 289

Query: 295 LCMTVDNPDMGKAIESM---NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           +  T    ++G     +   +  +   P+ I  N +++ E I+         + +   ++
Sbjct: 290 IIFTSQRKEVGATKLVLKNDSFTFEGTPIKIRLNSRFIKEAINVFE------NNIEILMN 343

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           SS   V I+ KD           N   ++ P+RI
Sbjct: 344 SSEKPVLIKDKD---------SFNNLQLISPLRI 368


>gi|325914679|ref|ZP_08177020.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
 gi|325539181|gb|EGD10836.1| DNA polymerase III, beta subunit [Xanthomonas vesicatoria ATCC
           35937]
          Length = 374

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 87/400 (21%), Positives = 161/400 (40%), Gaps = 41/400 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDG-LLEIKASGPEIEITGAIP 58
           M IT  R D+L  +     + +R+  +     ++ ++A +G  +    S    +I  A  
Sbjct: 1   MHITTTREDLLAAIAPLMSVAQRRTKSRNGHANLTIRAGEGTQIHFNTSDENSDICTAST 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS---FPE 115
           A++   G I VSA  L DI+R    G+ +        G  +NI    S F +        
Sbjct: 61  ATIRERGEIGVSAKRLSDIMRSFASGSLVEM---QRKGNFLNIKLDGSRFSINCDGPLAP 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEEDLKLCAV 174
               + K  +    F+LA+   K L++     +A       L  G+ FH+  + L+L  V
Sbjct: 118 VTRQAAKTGQTTGKFDLAADEFKYLLDAACSGVAGLGSDSKLPQGVLFHLTGDRLRL--V 175

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNI 232
            TDG R+AVA   I     +   +++   +V +I  +LS    D  +  S      H+  
Sbjct: 176 GTDGGRMAVASTSI--NTLQAEKLVLGHNSVADIRTLLSKARSDEQIGFSWGSGMAHIKT 233

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
               + V ++   + +Y+ ++  +      V   +LR+ + R  I+S+    AV + L+ 
Sbjct: 234 TYADLHVGVLANTYVDYERIMAANTVNPFHVGLADLREILTRTLILST----AVTVKLTG 289

Query: 293 DKLC-MTVDNPDMGKAIESMN-VYYNEC-----PMDICFNYKYLLEIIDNISSDEVVDDE 345
             L  +T D     +  ES+  +             I  N +YLL+ ++      V  + 
Sbjct: 290 RTLSFITADQASRSQGQESIESIELPADARRVNDFAISVNAQYLLDALNA-----VRGES 344

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           V   +   ++ + +     D++          YV MP+RI
Sbjct: 345 VHLSVSKPDTPLIVLANGGDAR---------VYV-MPVRI 374


>gi|169825432|ref|YP_001695607.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41]
 gi|168994709|gb|ACA42248.1| DNA polymerase III subunit beta [Lysinibacillus sphaericus C3-41]
          Length = 365

 Score =  148 bits (373), Expect = 2e-33,   Method: Composition-based stats.
 Identities = 73/391 (18%), Positives = 156/391 (39%), Gaps = 34/391 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M++ +    I+  +    R   ++ T P    +LL  N   LE  AS  E+      P  
Sbjct: 1   MQMQLNSKTIVNGINKVGRFKSKEKTKPALQFILLNVNTDNLEFIASDNEVYYKHVEPVA 60

Query: 60  -SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             +   GS  +    L D +RK+     ++       GT +          +     ++F
Sbjct: 61  EGITKTGSFLIP-FKLEDALRKVSGTVSLTLE-----GTTLKFEAKGIKASIPVAVYNDF 114

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P     E   + +     L  +V +  +A AT + R  L G+    + ++ +   V+TD 
Sbjct: 115 PKEPTGEAGPAIQFTKEQLLEIVNQCGYASATSDTRPVLKGLNM--SGQNGEFQVVSTDS 172

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +RL         Q  ++P++ +P K +  +L  L   +    ++   +++ +  ++  + 
Sbjct: 173 YRLVKKVRK---QAIELPALTIPTKTLKSVLESLED-EVDFAMAPFGTQLIIKTDAQEIF 228

Query: 239 VRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKL 295
           +RLI   +P+   +    +D  +++VN   +  A++ V + +  + +   V L    D+L
Sbjct: 229 IRLITSTYPDTSKLAVIGDDYIKVKVNTKEITDALETVMLFAEEKSKGKNVLLESKGDQL 288

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMD-ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
            ++V   + G+    +N             N KYL+  ++          +++F+   S 
Sbjct: 289 RISVKG-ENGEIEHFINA--EGEEFTKTAMNAKYLITAVNAHKKSTT---DLLFKKGKSE 342

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + VFI   D+              +++P+RI
Sbjct: 343 APVFIMCDDE----------TLVQLILPIRI 363


>gi|255021959|ref|ZP_05293967.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
 gi|254968595|gb|EET26149.1| DNA polymerase III beta subunit [Acidithiobacillus caldus ATCC
           51756]
          Length = 401

 Score =  147 bits (371), Expect = 3e-33,   Method: Composition-based stats.
 Identities = 78/420 (18%), Positives = 164/420 (39%), Gaps = 56/420 (13%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  +    + ++   +  +++  +  P+  HVL++  D  + +       ++   +   
Sbjct: 1   MERQLSIDTLRKIATASAALVKGNSVQPIYDHVLIE--DQRVVLG--NATTQLEWFLDEE 56

Query: 61  VDVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
               G       A  L  I + L DGA +      E G +  I  G S F L  +  +++
Sbjct: 57  ERSFGFAPEAYPARDLERIAKSLPDGALV------EFGEQGQIRCGRSRFRLPVYDGAQY 110

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI----NEEDLKLCAV 174
           P   E        + +  L+ +       +A  + R YLNGI + I     +E   L   
Sbjct: 111 PVKAEPLPSAWIRVQTQDLERIFPSLRRCVAKNDTRTYLNGIHWQIRRVGEQEASLLVLE 170

Query: 175 ATDGHRLAVAEVDIVAQ---------------------IAKMPSIIVPRKAVGEILRILS 213
           ATDGHR A   ++                           +    I+P + +   +++L 
Sbjct: 171 ATDGHRAARFSLEYTPPLDSANDDSAASQGDCSPQGDCSPQGLDAILPVEGLSAWMKLLY 230

Query: 214 SKD-SSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQ 270
           S+  +   ++ + S +      L + +  +DG +P+   ++     ++  L ++  + ++
Sbjct: 231 SQKIAEFSIAQTRSGVIFQGGGLRLWLTSLDGRYPSLDTILAQLEKRKDVLSLSIADFQR 290

Query: 271 AVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC-PMDICFNYKYL 329
           A+   +I      QAV LS + D L       +  +A + +   ++   P+   FN +YL
Sbjct: 291 ALTLATIGVGE-SQAVTLSTAPDHLLSVAAKGEERQAEDQIPAQWSGSLPLRYSFNVQYL 349

Query: 330 LEIIDNIS-----SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           ++ +D++      S++  D ++  R D S         +KD  +          V+MP+R
Sbjct: 350 MDFVDSVKETTKGSEDTEDPQMALRFDVS---------EKDPTSTFAEVPGGVLVVMPIR 400


>gi|327398176|ref|YP_004339045.1| DNA polymerase III subunit beta [Hippea maritima DSM 10411]
 gi|327180805|gb|AEA32986.1| DNA polymerase III, beta subunit [Hippea maritima DSM 10411]
          Length = 365

 Score =  146 bits (370), Expect = 4e-33,   Method: Composition-based stats.
 Identities = 73/387 (18%), Positives = 154/387 (39%), Gaps = 28/387 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M IT++   I EL+     +   K    +  ++L++  +  +   A+     I   I   
Sbjct: 1   MSITIQTKTIKELINELT-LSTSKEKDNILSNILIEIKEDKIIGIAANNITSIEKTIETK 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            D   S  +     ++I++++++       ++N     + +        +++     FP 
Sbjct: 60  TDNQLSFIIDPVKFFNILKEIKEETVELELEKN----IITVKSSSFKTKIKTQDPGLFPH 115

Query: 121 TKEEEYVYSFELASSVL-KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
            K  E +       +   K L+  T +     +I     GIF  I +  +K  A ATD +
Sbjct: 116 IKHSENIEKICQIQAKKLKKLIRETIYCPDKNDISREYTGIFIEIEQNYIK--ATATDHY 173

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           RL    +          + I+       I R+  S +  +++  SE+ I +  E+L +S 
Sbjct: 174 RL--INIKTENTNDIEANFIIENAGAALINRL--SLEGEIELYKSENEILIKQENLVVSS 229

Query: 240 RLIDGEFPNYQN-VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMT 298
           ++I G FP+Y   ++  S    + +    L+ AV R SI+S  +    K+ +    L + 
Sbjct: 230 KIISGNFPDYNQILLDRSTSNSVEIEKEKLKDAVKRSSILSENKDITAKIDIKEKTLTLI 289

Query: 299 VDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
             N +   A + +N+     E  ++I  N K++L+ ++ I +     D V+    S+   
Sbjct: 290 GQNSEGETAEDIINITPIETEKDLNIKLNSKFILDFLNQIEA-----DTVILLYKSAEEP 344

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +     + +            Y++ P+
Sbjct: 345 IMFESNEDEYY--------YKYIMTPI 363


>gi|289811520|ref|ZP_06542149.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 119

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 39/122 (31%), Positives = 63/122 (51%), Gaps = 4/122 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1   MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61  V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
                G+ TV A   +DI R L +GA+I+   E   G  + +  G S F L + P ++FP
Sbjct: 61  QPHEPGATTVPARKFFDICRGLPEGAEIAVQLE---GDRMLVRSGRSRFSLSTLPAADFP 117

Query: 120 ST 121
           + 
Sbjct: 118 NL 119


>gi|113473946|ref|YP_720007.1| DNA polymerase III subunit beta [Trichodesmium erythraeum IMS101]
 gi|110164994|gb|ABG49534.1| DNA polymerase III, beta subunit [Trichodesmium erythraeum IMS101]
          Length = 200

 Score =  146 bits (369), Expect = 5e-33,   Method: Composition-based stats.
 Identities = 45/192 (23%), Positives = 99/192 (51%), Gaps = 18/192 (9%)

Query: 199 IVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
            +P KA+ E+ R++S     SSV +   E+++   +    ++ R ++G++P YQ ++P  
Sbjct: 20  TIPAKALREVERMISMGKSGSSVTLKFDENQVIFELGKQRLTSRKLEGQYPAYQQLLPNQ 79

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESMNVY 314
              ++ V+      AV+R+++++  +   +K ++   + ++ ++VD  D+G   ESM   
Sbjct: 80  FTNQINVDRKKFLGAVERIAVLADQKNNILKCTIDSVNQEISLSVDAQDVGSGRESMAAQ 139

Query: 315 Y-NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
             ++ P +I FN KYL+E +  I S      E+  +L+++ + V +         N    
Sbjct: 140 ISSDEPEEIAFNVKYLIEGLKAIPS----ASEISIQLNTATTPVVL---------NPLGG 186

Query: 374 VNAFYVLMPMRI 385
               Y++MP+++
Sbjct: 187 FQMTYLIMPVQL 198


>gi|313635498|gb|EFS01734.1| DNA polymerase III, beta subunit [Listeria seeligeri FSL N1-067]
          Length = 175

 Score =  146 bits (369), Expect = 6e-33,   Method: Composition-based stats.
 Identities = 48/177 (27%), Positives = 81/177 (45%), Gaps = 11/177 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTTNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDL 169
               E+P   E     + ++  +VLKN++ +T FA++  E+R  L G+ + I E  L
Sbjct: 118 LDPMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKENKL 174



 Score = 40.2 bits (93), Expect = 0.48,   Method: Composition-based stats.
 Identities = 28/176 (15%), Positives = 71/176 (40%), Gaps = 12/176 (6%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV--- 186
           F +    L   V     A++       L GI   +N+E + L    +D    A   +   
Sbjct: 3   FVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIEN 62

Query: 187 -DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
            +++ ++     I++  K  G+I+R L  ++  ++V+ +  + +++    S ++  +D  
Sbjct: 63  DEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVT-TNYQTNISSGQASFTLNGLD-- 119

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRV-----SIMSSVRIQAVKLSLSSDKLC 296
              Y  +   ++ K +++    L+  + +      +I     +  V   +  +KL 
Sbjct: 120 PMEYPKLPEVTDGKNIKIPINVLKNIIRQTVFAVSAIEVRPVLTGVNWIIKENKLS 175


>gi|194097592|ref|YP_002000628.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
 gi|193932882|gb|ACF28706.1| DNA polymerase III subunit beta [Neisseria gonorrhoeae NCCP11945]
          Length = 167

 Score =  145 bits (366), Expect = 1e-32,   Method: Composition-based stats.
 Identities = 46/181 (25%), Positives = 92/181 (50%), Gaps = 14/181 (7%)

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           + E+ ++L++ D  +++ L + ++       ++  ++IDG+FP++  VIP  NDK   ++
Sbjct: 1   MLELFKLLNNPDDPIQIELLDKQVRFQCNGTTIVSKVIDGKFPDFNRVIPLDNDKIFVLS 60

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
              L  A++RVSI+++ + +  +L L    L +   N +  +A E + + Y    +++ F
Sbjct: 61  RAELLGALERVSILANEKFRGARLFLQPGLLSVVCSNNEQEEAREEIEIAYQGGELEVGF 120

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N  YL++++ NI S     D++      +N S               N  N  Y++MPMR
Sbjct: 121 NIGYLMDVLRNIHS-----DDMQLAFGDANRSTLFTVP---------NNPNFKYIVMPMR 166

Query: 385 I 385
           I
Sbjct: 167 I 167


>gi|302520517|ref|ZP_07272859.1| DNA polymerase III beta subunit domain-containing protein
           [Streptomyces sp. SPB78]
 gi|302429412|gb|EFL01228.1| DNA polymerase III beta subunit domain-containing protein
           [Streptomyces sp. SPB78]
          Length = 165

 Score =  144 bits (364), Expect = 2e-32,   Method: Composition-based stats.
 Identities = 33/162 (20%), Positives = 66/162 (40%), Gaps = 9/162 (5%)

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            E  I         + RL++G+ P Y+ + P   +    +      +AV RV++++  R 
Sbjct: 11  GEGLIGFEGAGRRTTTRLLEGDLPKYRTLFPTEFNSVAVIETAPFVEAVKRVALVA-ERN 69

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
             V+LS     L +   + D  +A+E ++       + I FN  +LL+ +  I S     
Sbjct: 70  TPVRLSFEQGVLILEAGSSDDAQAVERVDAQLEGDDISIAFNPTFLLDGLSAIDSPV--- 126

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                   +S     + G+      + +      Y++MP+R+
Sbjct: 127 --AQLSFTTSTKPALLSGR---PAVDAEADDAYKYLIMPVRL 163


>gi|289807836|ref|ZP_06538465.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 147

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 55/149 (36%), Positives = 89/149 (59%), Gaps = 3/149 (2%)

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +    F L  + +K L+E T F+MA +++RYYLNG+ F     +L+   VATDGHRLAV
Sbjct: 1   WQSEVEFTLPQATMKRLIEATQFSMAHQDVRYYLNGMLFETEGSELR--TVATDGHRLAV 58

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID 243
             + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + +L+D
Sbjct: 59  CSMPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVD 117

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
           G FP+Y+ V+P + DK L   C  L+QA 
Sbjct: 118 GRFPDYRRVLPKNPDKHLEAGCDILKQAF 146


>gi|158421575|ref|YP_001527802.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
 gi|158342818|gb|ABW35104.1| DNA polymerase III, beta subunit [Deinococcus geothermalis DSM
           11300]
          Length = 367

 Score =  144 bits (363), Expect = 3e-32,   Method: Composition-based stats.
 Identities = 81/374 (21%), Positives = 146/374 (39%), Gaps = 38/374 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSC------HVLLQANDGLLEIKASGPEIEIT 54
           M I V +  +   LG    +   +              VL+++    L +   G ++   
Sbjct: 1   MSIAVSKRALSAALGRVTHLTGAR-----LSPGTTRGSVLVESAPDGLTLTVRG-DVNAE 54

Query: 55  GAIPASV---DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
             +PA V        + + A LL   VR          F    L   ++I+ G S   + 
Sbjct: 55  LTVPADVPFHLEPARLVLPAELLSVHVRNAPGEVIHLEF----LRHALDITSGSSRVEVH 110

Query: 112 SFP---ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
           + P   E +  +           L+   L        +A + E  +    GI F   E  
Sbjct: 111 TSPSAPEPDAFAVTFPSEGLLLALSVPDLTLAANAVLYAASHEAFQAVFRGILFEGRESG 170

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           L+L  VA+DG+R+A A  D+     +    I+    V E+LR+L  +D +  +    + +
Sbjct: 171 LRL--VASDGYRVATA--DLPTPPPQPFKAIIHAAHVRELLRLLGGRD-TASLQFDGTHL 225

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVK 287
            +    +++S+  +DGEFP Y+ VIP        V    LR++V+RV+IMS       ++
Sbjct: 226 TVRAGGITVSLPYMDGEFPAYERVIPAV-TGGFAVPAQALRESVNRVAIMSDKNANNRLE 284

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVY--YNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
           L+L+  +L +T    D G   + + V   + + P  +  N ++L E +            
Sbjct: 285 LTLAEGRLVLTAHG-DYGTGQDVLEVTDRHGDPPAQLAVNARFLQEALA------PTTGT 337

Query: 346 VVFRLDSSNSSVFI 359
           +   L  S     +
Sbjct: 338 LRVGLSGSTKPFVL 351


>gi|168184796|ref|ZP_02619460.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
 gi|182672169|gb|EDT84130.1| DNA polymerase III, beta subunit [Clostridium botulinum Bf]
          Length = 381

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 79/400 (19%), Positives = 170/400 (42%), Gaps = 38/400 (9%)

Query: 1   MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55
           M I V   +  + +       A   +   + I +        + G L I +   +  +  
Sbjct: 1   MNIKVNGGEFKKYIGLALKSTASSAVNANDIINI------STDTGKLIILSGSSDFTLKQ 54

Query: 56  AIP-ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +    +   G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    
Sbjct: 55  ELKNVIISEEGNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAR 113

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E       + + +YS  L + V K+L++ T +A+A +E R  L G +  + +  +K+   
Sbjct: 114 EHTISDILKSDIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKI--T 171

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A DG RL      I  Q   M  I++    +  +  ++      V ++ + ++  + +++
Sbjct: 172 ALDGFRLVSNSAKIENQHEDM--ILIHANNLRNLSSLIDDSTEEVILNKNNNKAIVEVKN 229

Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286
            +        +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS       +
Sbjct: 230 KNYVAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344
            + L+ D L +  ++  +      +N+  N  E    I FN KY+L+ + NI++      
Sbjct: 290 LMKLNKDSLEIDGNSS-VASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTK----- 343

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           E+    +S+ S   I  K +  ++ + N      +++P++
Sbjct: 344 EIDMFFNSNVSPAIIINKPEKEEDIEINA-----LVLPVK 378


>gi|23193212|gb|AAN14435.1|AF319585_2 DNA polymerase III beta chain [Bacillus cereus]
          Length = 160

 Score =  143 bits (361), Expect = 5e-32,   Method: Composition-based stats.
 Identities = 41/163 (25%), Positives = 78/163 (47%), Gaps = 11/163 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  ENGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              +E+P   + E  + F++ + +LK+++ +T FA++T E R 
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP 160


>gi|23193215|gb|AAN14437.1|AF319586_2 DNA polymerase III beta chain [Bacillus cereus]
 gi|23193221|gb|AAN14441.1|AF319588_2 DNA polymerase III beta chain [Bacillus thuringiensis serovar
           galleriae]
          Length = 160

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              +E+P   + E  + F++ + +LK+++ +T FA++T E R 
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP 160


>gi|23193217|gb|AAN14438.1|AF319587_1 DNA polymerase III beta chain [Bacillus thuringiensis serovar
           berliner]
          Length = 160

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 39/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  ENGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              +E+P   + E  + F++ + +LK+++ +T FA++T E R 
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSTSETRP 160


>gi|262340837|ref|YP_003283692.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella
           germanica) str. Bge]
 gi|262272174|gb|ACY40082.1| DNA polymerase III subunit beta [Blattabacterium sp. (Blattella
           germanica) str. Bge]
          Length = 386

 Score =  142 bits (359), Expect = 7e-32,   Method: Composition-based stats.
 Identities = 83/378 (21%), Positives = 166/378 (43%), Gaps = 29/378 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKA-SGPEIEITGAIPA 59
           M   V    +L+ L    +II   N+     + + +     L+I      E  +   I  
Sbjct: 1   MYFFVSSHSLLQKLHTLYQIINSNNSNS--EYFIFEIVKNKLKIIVLCDSENIVNTYIKV 58

Query: 60  SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSN----FYLQSF 113
           +V       + VS  L+ D++    +  +  FFK+ ++   +    G       F+  S 
Sbjct: 59  NVKKYTKEKVVVSTKLMIDVLTTFPN--ETLFFKKKKIALNIFSEQGSYKIPIYFHKYSM 116

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
              +   +          L S++L  ++ +T FA+  ++ +  LNG+FF  +  +     
Sbjct: 117 NFFKKKESIFRSSTMKITLFSNILSKILNQTLFAVGDKKFQPILNGVFFQFSPYEANF-- 174

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRIL-SSKDSSVKVSLSES-RIHLN 231
           VATD  R+    +    +  K     +P+K++  I  IL + K+S++ +  +    I  +
Sbjct: 175 VATDTFRMVKYTIK-NLKFDKYIEFTIPKKSLDIIREILKNEKNSNIVIEYNNKINIVFH 233

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
            ++   S RLI+ ++PNY +VIP +N D    +N   L   + R+SI S  +   + L L
Sbjct: 234 FQNHIFSCRLINQKYPNYNSVIPNNNCDVSFVINRLLLLNTIRRISIFSKKKKNFIHLHL 293

Query: 291 SSDKLCMT----VDNPDMGKAIESMNVYYN---ECPMDICFNYKYLLEIIDNISSDEVVD 343
           + +KL +     ++N + G  I+   ++ +      + + FN K+L+EI+ +++     +
Sbjct: 294 NRNKLKIFEQKAINNYNFGSKIKCKPIFDDLRKIESIQMGFNSKFLIEILSSLN-----E 348

Query: 344 DEVVFRLDSSNSSVFIRG 361
           + + F L  SN    +R 
Sbjct: 349 NFISFELYHSNKIGILRP 366


>gi|169834653|ref|YP_001693398.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str.
           Okra]
 gi|169123201|gb|ACA47036.1| DNA polymerase III, beta subunit [Clostridium botulinum B1 str.
           Okra]
          Length = 381

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 169/400 (42%), Gaps = 38/400 (9%)

Query: 1   MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55
           M I V   +  + +       A   +   + I +        ++  L I +   +  +  
Sbjct: 1   MNIKVNGGEFKKYIGLALKSTASSAVNANDIINI------STDNSKLIILSGSSDFTLKQ 54

Query: 56  AI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +    +   G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    
Sbjct: 55  ELSNVIITEEGNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAR 113

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E       + + +YS  L + V K+L++ T +A+A +E R  L G +  + +  +K+   
Sbjct: 114 EHTISDILKSDIIYSLNLDAKVFKSLIDTTSYAVAQDEARPILLGQYIELEKNLIKI--T 171

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A DG RL      I  Q   M  I++    +  +  ++      V ++ + ++  + +++
Sbjct: 172 ALDGFRLVSNSAKIENQHEDM--ILIHANNLRNLSSLIDDSTEEVILNKNNNKTIVEVKN 229

Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286
            +        +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS       +
Sbjct: 230 KNYVAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344
            + L+ D L +  ++  +      +N+  N  E    I FN KY+L+ + NI++ E+   
Sbjct: 290 LMKLNKDSLEIDGNSS-VASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEID-- 346

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +S+ S   I  K +  +  + N      +++P++
Sbjct: 347 ---MFFNSNVSPAIIINKPEKEEGIEINA-----LVLPVK 378


>gi|169834795|ref|YP_001715742.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str.
           Loch Maree]
 gi|169408902|gb|ACA57312.1| DNA polymerase III, beta subunit [Clostridium botulinum A3 str.
           Loch Maree]
          Length = 381

 Score =  142 bits (358), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 78/400 (19%), Positives = 170/400 (42%), Gaps = 38/400 (9%)

Query: 1   MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55
           M I V   +  + +       A   +   + I +        ++  L I +   +  +  
Sbjct: 1   MNIKVNGGEFKKYIGLALKSTASSAVNANDIINI------STDNSNLIILSGSSDFTLKQ 54

Query: 56  AI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +    +   G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    
Sbjct: 55  KLSNVIISEEGNINISVTILNAIIKKMTN-EEISLFIDPKNNDVLKIKQGRNNSKIALAK 113

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E       + + +YS  L + V K+L++ T +A+A +E R  L G +  + +  +K+   
Sbjct: 114 EHTISDILKSDIIYSLNLDAKVFKSLIDTTSYAVAQDESRPILLGQYIELEKNLIKI--T 171

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A DG RL      I  Q   M  I++    +  +  ++      V ++ + ++  + +++
Sbjct: 172 ALDGFRLVSNSAKIENQHEDM--ILIHANNLRNLSSLIDDSTEEVILNKNNNKAIVEVKN 229

Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286
            +        +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS       +
Sbjct: 230 KNYVAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDD 344
            + L+ D L +  ++  +      +N+  N       I FN KY+L+ + NI++ E+   
Sbjct: 290 LMKLNKDSLEIDGNSS-VASMKGEVNIINNNFQEEFTIGFNPKYILDALKNINTKEID-- 346

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +S+ S V I  K + +++   N      +++P++
Sbjct: 347 ---IFFNSNVSPVIIINKPEKAEDISVNA-----LVLPVK 378


>gi|23193186|gb|AAN14417.1|AF319577_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 160

 Score =  141 bits (357), Expect = 1e-31,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIEQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R 
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRP 160


>gi|23193183|gb|AAN14415.1|AF319576_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 160

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 77/163 (47%), Gaps = 11/163 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   ++  GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIEQTGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R 
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRP 160


>gi|21233713|ref|NP_640011.1| DNA polymerase III beta chain [Proteus vulgaris]
 gi|21202897|dbj|BAB93613.1| DNA polymerase III beta chain [Proteus vulgaris]
          Length = 422

 Score =  141 bits (356), Expect = 2e-31,   Method: Composition-based stats.
 Identities = 68/388 (17%), Positives = 154/388 (39%), Gaps = 47/388 (12%)

Query: 29  VSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT--VSAHLLYDIVRKLQDGAQ 86
           V   + L      L             +        G +   V A  +  + R ++    
Sbjct: 49  VLEMLTLTLVGDNLSALGVDYNTGQVISRGVVHKANGDMVASVPATHISTLFRNMKGEET 108

Query: 87  ISFFKENELGTEVNISHGDSNFYLQ-SFPESEFPSTKEEEYVYSFELASSVLKNLVERTH 145
           ++   + E    + I  G + + +             +    YS    +++L   ++R  
Sbjct: 109 VNVRCDQERN-RLIIRTGKNAYNIPLCMDAIPVVDESDLTAKYSITFPANMLHRTLQRVM 167

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI------- 198
            +    ++R+Y+NG+F  +++      AVATDGHR++V   D++        I       
Sbjct: 168 HSAGKNDVRHYMNGVFLSLDKN--VFNAVATDGHRMSVMTEDVLFTDEPQEDITSPVAPV 225

Query: 199 ---------IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNY 249
                    I+P +    ++++L++   S ++  SES +  N+  +++   LI+G +P++
Sbjct: 226 SLSGTSSGVILPIEVCPILMKLLAANKGSFRMDYSESYLTFNLGDVTVVSNLINGRYPDW 285

Query: 250 QNV--IPCSNDKELRVNCTNLRQAVDRV-------SIMSSVRIQAVKLSLSSDKLCMTVD 300
           + V  +   N ++  VN   LR+A+ R        ++  +     V     S+ L +   
Sbjct: 286 RRVAGVVKHNTEKFSVNALVLREALSRALPLINAGAVNKNSNSTGV-FVFKSNALMIKSP 344

Query: 301 NPDMGKAIESMNVYY----NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
           + ++ +  E +++       E  ++I  N +YLL  ++++ S    + ++ F L  + + 
Sbjct: 345 SQNLIECKEVLDIEKVAGEQEDKIEIGMNCEYLLRSLNSLVSHSGEEADITFALKDTLTG 404

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + I   D               ++MP+R
Sbjct: 405 MEIGFGDDCCD-----------IIMPVR 421


>gi|23193189|gb|AAN14419.1|AF319578_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
 gi|23193197|gb|AAN14425.1|AF319580_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
 gi|23193200|gb|AAN14427.1|AF319581_2 DNA polymerase III beta chain [Bacillus mycoides]
 gi|23193203|gb|AAN14429.1|AF319582_2 DNA polymerase III beta chain [Bacillus weihenstephanensis]
          Length = 160

 Score =  141 bits (355), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 38/163 (23%), Positives = 76/163 (46%), Gaps = 11/163 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  DAGKEIVEIKQSGSIILQAKYFSEIVKKLP-KETVEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
              +E+P   + E  + F++ + +LK+++ +T FA+++ E R 
Sbjct: 118 LDAAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVSSSETRP 160


>gi|240047137|ref|YP_002960525.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae HRC/581]
 gi|239984709|emb|CAT04681.1| DNA polymerase III beta subunit [Mycoplasma conjunctivae]
          Length = 366

 Score =  140 bits (353), Expect = 3e-31,   Method: Composition-based stats.
 Identities = 62/346 (17%), Positives = 144/346 (41%), Gaps = 19/346 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           MK  +++    + +      I  +   P      L+A    L I ++  E+     I   
Sbjct: 1   MKFKIKKEIFEKEIERTSNGIFVQGNSP-LSGYYLKATREGLSIISTNGELSFKSFINSD 59

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              +   G   +    L +I++K ++     F       TE  IS  +++F       + 
Sbjct: 60  KIDIIEVGICLIDGFFLKNIIKKSEN-----FINFEIKSTEALISWENASFSKVLKDHTI 114

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
           FP    +      ++ +  LK  ++ THFA ++      L+ I   I  +D  L   ATD
Sbjct: 115 FPEVNFDPIGIKVKVNAKELKKAIKNTHFAASSNVNSPILSSIN--IKSQDNILIFSATD 172

Query: 178 GHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
            +R A  ++ I   +     + +  + +     I S  +  +++ +SE++++   ++L++
Sbjct: 173 TNRFASDKISISEPVD--IDVSINSENLKNF--IPSEVEGEIELFVSENKVNFTYDNLTI 228

Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
             ++++  + +  NVIP        L++    +   +D+ ++++  +  A+   LS  ++
Sbjct: 229 QTKVLNVPYKDISNVIPKPESLIYRLKIEKKEILSLIDKATVIAPGKDSAITFHLSKKEI 288

Query: 296 CMTVDNPDMGKAIESMN--VYYNECPMDICFNYKYLLEIIDNISSD 339
             ++   + G++    +  + Y+   + I  N+KYL + I     D
Sbjct: 289 TASISKQETGQSKVKSDKVIKYSGEDVLINVNFKYLKDAISVFDKD 334



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 33/244 (13%), Positives = 92/244 (37%), Gaps = 12/244 (4%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+ V   ++ + + +           P+   + +++ D +L   A+      +  I  S 
Sbjct: 126 KVKVNAKELKKAIKNTHFAASSNVNSPILSSINIKSQDNILIFSATDTNRFASDKISISE 185

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELG-TEVNISHGDSNFYLQSFPESEFPS 120
            V   +++++  L + +    +G    F  EN++  T  N++       +     S    
Sbjct: 186 PVDIDVSINSENLKNFIPSEVEGEIELFVSENKVNFTYDNLTIQTKVLNVPYKDISNVIP 245

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             E   +Y  ++    + +L+++       ++       I FH++++++       +  +
Sbjct: 246 KPE-SLIYRLKIEKKEILSLIDKATVIAPGKDSA-----ITFHLSKKEITASISKQETGQ 299

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSE--SRIHLNIESLSMS 238
             V    ++    +   I V  K + + + +    D  + + + E  +RI +  E     
Sbjct: 300 SKVKSDKVIKYSGEDVLINVNFKYLKDAISVF---DKDINIFVDERKTRILIISEHEKTI 356

Query: 239 VRLI 242
            +L+
Sbjct: 357 TQLV 360


>gi|295099697|emb|CBK88786.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Eubacterium
           cylindroides T2-87]
          Length = 196

 Score =  139 bits (350), Expect = 9e-31,   Method: Composition-based stats.
 Identities = 48/201 (23%), Positives = 84/201 (41%), Gaps = 11/201 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  +++R    E L    R I   + +P    + +      + +  S   + I   I   
Sbjct: 1   MHFSIDRKYFYEKLSVVSRAISVFSPLPALSGICIDVKSDQIILTGSDSNVSIRSTIVRG 60

Query: 58  ---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +D  GSI + +  L +I+RK+ D   +     +   + V IS  +  F L    
Sbjct: 61  ELNQLDIDSTGSIVIESKYLLEIIRKM-DCTMVELELVD--YSLVRISSDNGQFNLNGIQ 117

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +E+P+    +   SFEL S  LK++V +T FA + ++ R  LNG+ F  +     L   
Sbjct: 118 SNEYPNIDFSQPTNSFELKSKDLKDIVSQTSFACSDKDTRPVLNGVNFKASNN--TLYCS 175

Query: 175 ATDGHRLAVAEVDIVAQIAKM 195
            TD +RLA   + +      +
Sbjct: 176 GTDSYRLARKVLPLQINHDSI 196


>gi|229587310|ref|YP_002860348.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
 gi|229260366|gb|ACQ51403.1| DNA polymerase III, beta subunit [Clostridium botulinum Ba4 str.
           657]
          Length = 381

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 75/400 (18%), Positives = 169/400 (42%), Gaps = 38/400 (9%)

Query: 1   MKITVERSDILELL-----GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITG 55
           M I V   +  + +       A   +   + I +S +      +  L I +   +  +  
Sbjct: 1   MNIKVNGGEFKKYIGLALKSTASSAVNANDIINISTN------NDKLIILSGSSDFTLKQ 54

Query: 56  AI-PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
            +    +   G+I +S  +L  I++K+ +  +IS F + +    + I  G +N  +    
Sbjct: 55  ELSNIIISEEGNINISVTILNAIIKKMSN-EEISLFIDPKNNDVLKIKQGRNNSKIALAK 113

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           E       + + +YS  L   + K+L+E T +A+A +E R  L G +  +    +K+   
Sbjct: 114 EHTISDILKSDIIYSLNLNPKIFKDLIESTSYAVAQDESRPILLGQYIELENNLIKI--T 171

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
           A DG RL      I  +      I++    +  +  ++      + ++ + ++  + +++
Sbjct: 172 ALDGFRLISNSAKIENKHKD--KILIHANNLKNLSSLIDDSTEELILNKNNNKAIVEVKN 229

Query: 235 LSMS----VRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSS--VRIQAV 286
            + +      +   EF  Y+ +I    S   ++ V+   L   VDR+S++SS       +
Sbjct: 230 KNYAAIAASNIFSEEFIEYKQLIGDLSSFPIKITVDRLQLLNTVDRISVVSSFVKEGTHI 289

Query: 287 KLSLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDD 344
            + L+ D + +  ++  +      +N+  N  E    I FN KY+L+ + NI++ E+   
Sbjct: 290 LMKLNKDSIEIDGNSS-VASMKGEVNIKNNNFEEEFTIGFNPKYILDALKNINTKEID-- 346

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                 +S+ S   I  K + +++   N      +++P++
Sbjct: 347 ---IFFNSNVSPAIIINKPEKAEDISVNA-----LVLPVK 378


>gi|34764154|ref|ZP_00145022.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886072|gb|EAA23380.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 307

 Score =  139 bits (350), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 63/292 (21%), Positives = 124/292 (42%), Gaps = 14/292 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA- 59
           M I V R + L  +    + ++     P+   +  +  +  +    +  +  I  +I   
Sbjct: 1   MHIKVNRQNFLSAIRTVEKSVKENKIKPILSCIYAKVKENKIYFTGTNLDTTIKTSIDVN 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
            V   G I  S  ++ + +++++D   +      E G  + I   DS          ++P
Sbjct: 61  EVIREGEIAFSYSIIDEYLKEIKDEFVVLRV---ENGNILFIETEDSTTEYDVHSAEDYP 117

Query: 120 STKE----EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           +T E     E  + FE+ S  L N+ E+  F+  T +    +N I      +   L  ++
Sbjct: 118 NTFENVVLNENNFKFEMPSQELVNIFEKVLFSADTSDNI-AMNCIRIESILK--HLHFIS 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV-KVSLSESRIHLNIES 234
           T+ +RL   + +I   I    S+ VP   +  I++I+   D+ V KV   E+ ++   + 
Sbjct: 175 TNTYRLTFLKKNIDKDIPD-FSVSVPADTISSIIKIIKGLDNEVIKVYKEEAHLYFQYKD 233

Query: 235 LSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQA 285
             +  +LI+  FPNY  ++   S DK+L +N   L   + R+ I S    ++
Sbjct: 234 TMIITKLIELRFPNYAEILSNISYDKKLYINNEKLTNLLKRILIFSRSNSES 285


>gi|23193209|gb|AAN14433.1|AF319584_2 DNA polymerase III beta chain [Bacillus cereus]
          Length = 156

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 39/158 (24%), Positives = 76/158 (48%), Gaps = 11/158 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRSVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V   GSI + A    +IV+KL     +    EN L T+  I+ G S F L  
Sbjct: 61  ENGKEIVEVKQSGSIVLQAKYFSEIVKKLP-KETVEISVENHLMTK--ITSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
              +E+P   + E  + F++ + +LK+++ +T FA++T
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155


>gi|332294863|ref|YP_004436786.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM
           14796]
 gi|332177966|gb|AEE13655.1| DNA polymerase III, beta subunit [Thermodesulfobium narugense DSM
           14796]
          Length = 370

 Score =  138 bits (349), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 65/385 (16%), Positives = 169/385 (43%), Gaps = 37/385 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++ ++  ++ +++    + I +K+ + +  ++ + A D  +  +++  E+EIT       
Sbjct: 18  RLELQTKELNKIIQDLSKNI-KKHPVEILRNIQISAQDKHIIFRSTDLEVEITYFFETEQ 76

Query: 62  DVCGS-ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++    I + ++ L ++++   +      F+      ++ I   D +  +    +  FP 
Sbjct: 77  EIKIDPILIESNELSNLIKNYPNEKINFEFQ----NEKLIIEGEDLSATIPLKQDPNFPD 132

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
             +        +  +++K  +E+   + +        +G+ F   E+ L +   ATDG R
Sbjct: 133 PIDTSKAQPKSINFNLIKQAIEKVISSSSQSSDSKM-SGVNFKTKEKTLTI--AATDGFR 189

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-SESRIHLNIESLSMSV 239
           LA+ ++++  +I    +  + +K   E+++     D++V +S  +++   L+     +SV
Sbjct: 190 LAIFKINLDEEID--MNFTISKKCAQEVIKF----DATVPISYQTQTHWVLSTHEKMLSV 243

Query: 240 RLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           + ++ E+PNY+  IP  N  +  +N  +  + +    I +S + + VK+SL  + L +  
Sbjct: 244 KKLNYEYPNYEKAIPSDNKYKFYINREDFIKKL----IFTSSQSEIVKISLKDNTLNIQS 299

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
            +  + K    +        ++  F   YL++ +         ++EV+F     N  + +
Sbjct: 300 SDSRI-KTKTLIKSVEEVKDIEFLFKSSYLIDGLKIFD-----EEEVLFTYKDENKPITL 353

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMR 384
                      +N +N  Y+ +P R
Sbjct: 354 -----------ENNINTTYITLPAR 367


>gi|23193206|gb|AAN14431.1|AF319583_2 DNA polymerase III beta chain [Bacillus cereus]
          Length = 156

 Score =  138 bits (348), Expect = 1e-30,   Method: Composition-based stats.
 Identities = 37/158 (23%), Positives = 74/158 (46%), Gaps = 11/158 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           M+ T+++  ++  +    + +  + TIP+   + + A +  + +  S  +I I   IP  
Sbjct: 1   MRFTIQKDYLVRGVQDVMKAVSSRTTIPILTGIKVVATEEGVTLTGSDADISIESFIPVE 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   +   GSI + A    +IV+KL     +    EN   T+  I  G S F L  
Sbjct: 61  EDGKEIVEIAQSGSIVLQAKYFSEIVKKLPKDT-VEISVENHFMTK--IKSGKSEFNLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMAT 150
              +E+P   + E  + F++ + +LK+++ +T FA++T
Sbjct: 118 LDSAEYPLLPQIEEHHVFKIPTDLLKHMIRQTVFAVST 155


>gi|170757755|ref|YP_001781752.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
 gi|169122967|gb|ACA46803.1| C-5 cytosine-specific DNA methylase [Clostridium botulinum B1 str.
           Okra]
          Length = 561

 Score =  138 bits (347), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 51/239 (21%), Positives = 101/239 (42%), Gaps = 35/239 (14%)

Query: 146 FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAV 205
           F  A +EIR  LNGI  + NE       +A DG+RLA+ + +   +      +IV    +
Sbjct: 356 FQKAKDEIRPILNGICINKNE------FIALDGYRLALRKGNFETKEP----VIVAADLI 405

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
             I ++    + +VK+  +++ +    + L +      G + NY ++IP + + ++ +  
Sbjct: 406 KVINKV--KYECNVKIYYNDNYVKFKFDDLEIVGYRRQGNYINYNSIIPENYNTKVTLKI 463

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFN 325
             +   +         + + V L   +DKL +  +N D+    ES+ +     P++I FN
Sbjct: 464 KPILDILK---DYKKNKFKVVDLDFQNDKLIIKANN-DIATVEESITIELQGEPLEISFN 519

Query: 326 YKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             YL++   N        D     L    + + IR            + N   +++P+R
Sbjct: 520 ADYLIDAFKN-------YDNATLELTYCVNPMVIR------------ENNKLDLVLPVR 559


>gi|237751288|ref|ZP_04581768.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879]
 gi|229372654|gb|EEO23045.1| DNA polymerase III subunit beta [Helicobacter bilis ATCC 43879]
          Length = 370

 Score =  137 bits (346), Expect = 2e-30,   Method: Composition-based stats.
 Identities = 77/394 (19%), Positives = 169/394 (42%), Gaps = 42/394 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV- 61
           I++++S + + + +    + +KN I ++ ++ L+  D  L +KA+  EI I   +  +  
Sbjct: 2   ISIDKSILDQAITNMQSAVNKKNVIDITANISLETIDNNLILKATDHEIYIRTILKTNSL 61

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
                  V+   + + ++ L D   I       L  +    +  S F +  F  +E P +
Sbjct: 62  QGEIKCAVNGEAIGNFIKGLNDSEVIIEQDNENLYIK---QNNASVFKIPIFEINELPFS 118

Query: 122 KEEEYV----YSFELASSVLKNLVERTHFAMATEEIRYY-LNGIFFHINEEDLKLCAVAT 176
           +  +       S ++ ++ L   +++       +E     + GI F + ++++ +   AT
Sbjct: 119 QNYKNEQQGFQSIDINNNFLLQSLKKIMHCCNDKETFNIAMQGILFEVKDKEINI--AAT 176

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR----IHLNI 232
           D  RL   +     +  K    I+P+K + EIL++ S+        + +S     +    
Sbjct: 177 DSKRLGYIQKQ--TECDKDFISIIPKKTLQEILKLFSTDCELYIKPIQDSNKIETLCFVS 234

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
           E++    +LI+  FP+++++I        L++N   + + +++++ +     Q  K++  
Sbjct: 235 ENIEFYAKLINANFPDFKSIIANKPQLPTLKINKEKILKTLNQMNAIC----QRAKVTFE 290

Query: 292 SDKLCM-TVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           S+K+   T++  +   A  ++N   N    PM I    ++LLE I NI       DE   
Sbjct: 291 SNKIIFETLEGINGASASITINDIENHKAEPMTIGLVNRHLLECISNIK-----QDEFEI 345

Query: 349 RLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            +D     +F+  KD +             V+MP
Sbjct: 346 IIDDPYKPIFVITKDFEE------------VIMP 367


>gi|30171298|gb|AAP20073.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|30171302|gb|AAP20075.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 200

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 67/206 (32%), Positives = 119/206 (57%), Gaps = 7/206 (3%)

Query: 50  EIEITGAIPAS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF 108
           E E+   I  S     GSITVS   L +I R   + + I      E   +++IS  +SN+
Sbjct: 1   ETELISNIEISKTYTPGSITVSGQKLLNICRNSSELSDIKISLNKE---KIHISLENSNY 57

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEED 168
            L + P   FP+    ++V  F ++S +LK ++E+THF+M  +++RYYLNG+     +  
Sbjct: 58  ILNTLPAENFPNHNNFDHVSEFFISSDILKKMIEKTHFSMGKQDVRYYLNGMLLE--KNK 115

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
             L  VATDG+RL +A+  +   +  + S I+PRK + E+ ++L+ +   + V + ++ I
Sbjct: 116 TSLYTVATDGYRLGIAKTPLKKDVV-IFSAIIPRKGIIELHKLLNIEPQLIHVLIGKNNI 174

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVIP 254
            + IE L  +V+LI+GE+P+Y++++ 
Sbjct: 175 KIYIEKLIFTVQLIEGEYPDYKSILS 200


>gi|260469755|ref|ZP_05813914.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
 gi|259028487|gb|EEW29804.1| DNA polymerase III, beta subunit [Mesorhizobium opportunistum
           WSM2075]
          Length = 384

 Score =  137 bits (345), Expect = 3e-30,   Method: Composition-based stats.
 Identities = 72/383 (18%), Positives = 146/383 (38%), Gaps = 44/383 (11%)

Query: 23  RKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSA--HLLYD--IV 78
            +N I +  H  ++     L +  S  +IE    IP      G+  V+A    + +  I 
Sbjct: 24  SRN-IEILDHARMEVARKKLTLTMSDLDIEACATIPC----EGASIVAAIPRAVLEFFIA 78

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLK 138
           R        +    +++ T V   HG     +   P ++F         +S  + ++ L 
Sbjct: 79  RDGGGDDSGTLTFADDMKT-VVARHGKGRLTMPILPGADFFLIGAGTQDWSMAIRANELV 137

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHI---NEEDLKLCAVATDGHRLAVAEVDIVAQIAKM 195
            L+     AM  +E R+++ G+  H+    +    L   ATDGHR+    V+        
Sbjct: 138 ELLRTCVSAM--DETRHFIQGVLLHVAAGEDGASALRTAATDGHRVHTVGVEAPELTGGF 195

Query: 196 P-------SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPN 248
                    I +P + V E++RI    +S V +S ++  + +  E++ ++ +LID  F +
Sbjct: 196 AERQEGHQGITIPDRTVKELIRIFDGDESEVTLSGAKGIVTVEGEAIRVTSKLIDAAFAD 255

Query: 249 YQNVIPCSNDKELRVNCTNLRQAVDRVSIM-------SSVRIQAVKLSLSSDKLCMTVDN 301
           Y  ++       + V    L  A+ R+ ++        +   + ++++     L + +  
Sbjct: 256 YARLLQAPGAFRISVAAKALDAAIGRLLVLPRKDGKGKAETARPIRMTPVDGGLKLEIKG 315

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
            D   A + ++         I  N +Y+ + +      +V                 I G
Sbjct: 316 ND-ADAEDLIDCEVEGQGEPIVVNCRYIRDALAAAGGTKVTF-------------APIEG 361

Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384
                +   DN  ++F +LM MR
Sbjct: 362 NAIGVRMLPDNDRSSF-LLMQMR 383


>gi|158314395|ref|YP_001506903.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
 gi|158109800|gb|ABW11997.1| DNA polymerase III, beta subunit [Frankia sp. EAN1pec]
          Length = 409

 Score =  136 bits (344), Expect = 4e-30,   Method: Composition-based stats.
 Identities = 70/401 (17%), Positives = 143/401 (35%), Gaps = 37/401 (9%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPASVDVCGSI 67
           D+L  L     +++RK+  P     L+ A+ DG L +  + P+  ++  +P      G  
Sbjct: 21  DLLAALATVGAVLDRKSRPP-WNATLITADPDGELTLTGASPDATVSVRLPGVARSAGRF 79

Query: 68  TVSAHLLYDIVRKL------QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
            V    L  + + L      +D  ++    +        I+ GD    L   P  E P  
Sbjct: 80  LVDGWALTQMCKALVRGEHRRDTDELPVQLDGSFPPAPTITIGDYTVPLTGLPPEEHPGA 139

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            +     +  L  + L+  V+R   A+  ++    L G+          +   ATD +RL
Sbjct: 140 CQPAPTIA-TLDRAALRAAVDRVLPAVGRDDTLRVLTGMHMSFTPGLATV--AATDRYRL 196

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK-----VSLSESRIHLNIESLS 236
           AV  +           +++P K +       +    ++            R+       +
Sbjct: 197 AVDVLPATVTRPAGQELLLPAKILAACAETWTGSSVTIGHRRAASVHDVDRVTFTCGQTT 256

Query: 237 MSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRV-SIMSS--VRIQAV---KLS 289
           +S+    G +P ++ ++           +   +   V RV +I+++     + +    L+
Sbjct: 257 VSLVETGGSYPPWRKLLGSLDPQHTAVFDRATVAAHVARVLAILTAHPSTSRPIMTMTLT 316

Query: 290 LSSDKLCMTVDNPDMGKAIESMNV-----YYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
           L+ D L +    P+ G A  S              +   FN  YL + +  +S D V+  
Sbjct: 317 LTPDGLRVAPLLPEHG-ARVSAPTLPATTSITGGTVRWAFNAAYLRDALAALSGDTVLFS 375

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                    +  V +   +  + +         ++LMP+RI
Sbjct: 376 ----GQADVSKPVLLTSPEHQTASAPP----YRHLLMPIRI 408



 Score = 39.8 bits (92), Expect = 0.76,   Method: Composition-based stats.
 Identities = 22/178 (12%), Positives = 53/178 (29%), Gaps = 11/178 (6%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDV 63
           T++R+ +   +      + R +T+ V   + +    GL  + A+         +PA+V  
Sbjct: 148 TLDRAALRAAVDRVLPAVGRDDTLRVLTGMHMSFTPGLATVAATDRYRLAVDVLPATVTR 207

Query: 64  CG--SITVSAHLL---YDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
                + + A +L    +                      V  + G +   L     S  
Sbjct: 208 PAGQELLLPAKILAACAETWTGSSVTIGHRRAASVHDVDRVTFTCGQTTVSLVETGGSYP 267

Query: 119 PS---TKEEEYVYSFELASSVLKNLVERT--HFAMATEEIRYYLNGIFFHINEEDLKL 171
           P        +  ++     + +   V R            R  +  +   +  + L++
Sbjct: 268 PWRKLLGSLDPQHTAVFDRATVAAHVARVLAILTAHPSTSRPIMT-MTLTLTPDGLRV 324


>gi|313887222|ref|ZP_07820917.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332299737|ref|YP_004441658.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM
           20707]
 gi|312923313|gb|EFR34127.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica
           PR426713P-I]
 gi|332176800|gb|AEE12490.1| DNA polymerase III, beta subunit [Porphyromonas asaccharolytica DSM
           20707]
          Length = 402

 Score =  136 bits (343), Expect = 5e-30,   Method: Composition-based stats.
 Identities = 70/415 (16%), Positives = 153/415 (36%), Gaps = 43/415 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58
           MK TV  +++  LL +  R++   N ++P   + L +     + +      +  TG I P
Sbjct: 1   MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESE 117
              D      ++   L D ++ L         +  E G   +++ H      +       
Sbjct: 61  LECDGEMRFLIAPTPLLDYIKSLPVQPLTMEMQTTEEGARFIHLIHSTGYLDIPIGDADL 120

Query: 118 F---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +    S ++ E      + SS L   +     A   +  R  L+G+ F +  + L+LC  
Sbjct: 121 YVSRESPEDTEGAAMMSMNSSSLLAGISAVLPAAYPDTSREQLHGVHFVMLTDRLELC-- 178

Query: 175 ATDGHRLAV------AEVDIVAQIAK----MPSIIVPRKAVGEILRILSS-KDSSVKVSL 223
           ATD  +L          V+   ++A+     PS  +P K    +  IL +  +    V  
Sbjct: 179 ATDNVQLVRYIDYDARIVEKEDEVAQASLRDPSFTLPIKVSSFLQSILPNFANEEALVVF 238

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-- 281
           +  ++ +   + ++  ++   +FPNY  ++P +    + ++   L++A  RV+ +S++  
Sbjct: 239 NNKQVEVRFGTYNVVSQVSVLDFPNYNGLLPDAMTYMIEIDGQVLQRATTRVNYLSNIVG 298

Query: 282 ---RIQAVKLSLSSDKLCMTVDNPDMG------KAIESMNVYYNE--CPMDICFNYKYLL 330
                  + ++     + M       G         E + V Y E    M I F     +
Sbjct: 299 LGADSSLLCITFEEHAMVMKGGFYAQGANTPGVDVEERIPVDYPEQMEGMQITFKTNTFI 358

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + +   ++     + +   + ++   + I       + +            P+RI
Sbjct: 359 KFLKAFNA-----ESLQLHITNATQPIMITPTKVADQTDLRGITA------PVRI 402


>gi|320108254|ref|YP_004183844.1| DNA polymerase III subunit beta [Terriglobus saanensis SP1PR4]
 gi|319926775|gb|ADV83850.1| DNA polymerase III, beta subunit [Terriglobus saanensis SP1PR4]
          Length = 370

 Score =  136 bits (342), Expect = 7e-30,   Method: Composition-based stats.
 Identities = 70/389 (17%), Positives = 144/389 (37%), Gaps = 42/389 (10%)

Query: 10  ILELLGHACRIIERKNT-IPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           +   +      I + +  IP    + ++     + I A+   + I   +         + 
Sbjct: 11  LRSAVEIVRPAIAKASVGIPALRTIKMEKMPEGMGISANNLNVGIRVNLLTEFPDDRPVA 70

Query: 69  VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVY 128
           +SA  L + V+ L        FK +    +   S G     + +   +  P         
Sbjct: 71  ISAERLLNYVKLLDTEEVSITFKSD----KARFSSGACRAQVPTVEGA--PEFPMPTEGQ 124

Query: 129 SFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDI 188
           +  +A  VL   +    FAM   E R+ ++G       +D  L   A DG+R++V  +++
Sbjct: 125 TIAMAQDVLLRALRHVAFAMTESENRFVVDGALL--TAKDGYLEVAALDGYRISVYRIEM 182

Query: 189 VAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS-----MSVRLID 243
                    I++P      +L  L   D++V + L ES I + +E +      +    + 
Sbjct: 183 KG--LPECEILLPGDLCDALLATLRDCDATVSIQLGESAIGVRMEGIEAQIIEIRAGRLA 240

Query: 244 GEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
            +F  Y  ++P +    + +    L  A  R   M+ ++ Q +++    + + +    PD
Sbjct: 241 KKFAPYNKILPENRRLAIVLPAPRLLLAAQRCIAMADIKTQCIRMYFERESITLNGATPD 300

Query: 304 MGKAIESMNVYYNECP---MDICFNYKYLLEIIDNISSDEVVD----DEVVFRLDSSNSS 356
            G A E++++     P   + + F  +YL++ +  +  D  VD    D+V+         
Sbjct: 301 SGDADEAVSI--EGGPQTKLAMAFKGEYLVDALKKLRGDVTVDIGEKDQVMMLYAEP--- 355

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                                Y +MPMR+
Sbjct: 356 --------------FEGETLRYGVMPMRV 370


>gi|228471322|ref|ZP_04056125.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3]
 gi|228306899|gb|EEK16007.1| DNA polymerase III, beta subunit [Porphyromonas uenonis 60-3]
          Length = 402

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 70/416 (16%), Positives = 156/416 (37%), Gaps = 45/416 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKN-TIPVSCHVLLQANDGLLEIKASGPEIEITGAI-P 58
           MK TV  +++  LL +  R++   N ++P   + L +     + +      +  TG I P
Sbjct: 1   MKFTVNSNELSTLLQNVGRLVPASNVSMPALANYLFEVTPERISVTGGDTMMRSTGVIAP 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTE-VNISHGDSNFYLQSFPESE 117
              D      ++   L D ++ L         +  E G   +++ H      +       
Sbjct: 61  LECDGDMHFLIAPTPLLDYIKSLPVQPLTLEMQTTEEGARFIHLIHSTGYLDIPIGDAEL 120

Query: 118 F---PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
           +    S ++ E      + SS L + +     A   +  R  L+G+ F +  + L+LC  
Sbjct: 121 YVSRESPEDSEGAAMMSMNSSSLLSGISAVLPAAYPDTSREQLHGVHFVMLSDRLELC-- 178

Query: 175 ATDGHRLAV------AEVDIVAQIAK----MPSIIVPRKAVGEILRILSS-KDSSVKVSL 223
           ATD  +L          V+   ++A+     PS  +P K    +  IL +  +    V  
Sbjct: 179 ATDNVQLVRYIDYDARIVEKEGEVAQASLRDPSFTLPIKVSSFLQSILPNFANEEALVIF 238

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-- 281
           +  ++ +   + ++  ++   +FPNY  ++P +    + ++   L++A  RV+ +S++  
Sbjct: 239 NNKQVEVRFGTYNVVSQVSVLDFPNYNGLLPDAMTYMIEIDGQVLQRATTRVNYLSNIVG 298

Query: 282 ---RIQAVKLSLSSDKLCMT-------VDNPDMGKAIESMNVYYNE--CPMDICFNYKYL 329
                  + ++     + M         + P +    E + V Y E    M I F     
Sbjct: 299 LGADSSLLCITFEEHAMVMKGGFYAQGANTPGV-DVEERIPVDYPEQMEGMQITFKTNTF 357

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++ +   ++     + +   + ++   + I       + +            P+RI
Sbjct: 358 IKFLKAFNA-----ESLQLHITNATQPIMITPTKVADQTDLRGITA------PVRI 402


>gi|34762965|ref|ZP_00143943.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27887353|gb|EAA24445.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 319

 Score =  135 bits (340), Expect = 1e-29,   Method: Composition-based stats.
 Identities = 65/341 (19%), Positives = 147/341 (43%), Gaps = 33/341 (9%)

Query: 50  EIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFY 109
           EIE+       ++  G + +   LL + ++ L +   I+F K++       +   ++ F 
Sbjct: 5   EIELIRYANCEIESEGQVLIKPALLLEYIK-LVEEDNINFEKKDG-----YLIVNNAEFS 58

Query: 110 LQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL-NGIFFHINEED 168
           +    ++ +P   E   +      +      +E+  F   +      L N I     +  
Sbjct: 59  I--LDDNTYPELTEIIPIVIATENTVKFTMSLEKVKFLTNSSASMDTLFNSIKMIFKDNI 116

Query: 169 LKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRI 228
           L+L  V+TD  RL   + ++   I K   I+VP  ++  I +IL   D    ++ S+ ++
Sbjct: 117 LEL--VSTDSFRLIYMKKELNNTINK--DILVPGDSIAVIYKILKDLDEEFSLAASDDKL 172

Query: 229 HLNIESLSMSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRVSIM---SSVRIQ 284
            +  +    + +L+   FP+++ +I   ++DK    N   L  A+ +V  +   S+    
Sbjct: 173 IVTWKDAYFTCKLLSLNFPDFRPLINNTNHDKRFEFNRDELNLALKKVISVTKNSNDSKN 232

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDD 344
               +   ++L ++  + +  K  + +N+      + +  N KY+ E IDN+  + +++ 
Sbjct: 233 VATFNFKGNQLVISGVSSN-AKINQKVNMIKTGEDLKLGMNCKYIKEFIDNVDKNIIIE- 290

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  ++NSS  +R  ++ ++       N  Y++MP+ I
Sbjct: 291 -------ATNSSSMLRFMEERNE-------NYIYLIMPVNI 317


>gi|119394192|gb|ABL74458.1| DNA polymerase III beta subunit [Buchnera aphidicola]
 gi|119394198|gb|ABL74461.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 195

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 117/204 (57%), Gaps = 9/204 (4%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+     +E   L AVATDG+R+ + +  I   +    S+I+PRK + E+ ++L+
Sbjct: 1   RYYLNGMLL--KKEKTLLYAVATDGYRMGITKTSIQEDVI-PFSVIIPRKGIVELYKLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            K   ++  + ++ I + IE L  +++LI+G +P+Y +++    +  + +N   L+Q++ 
Sbjct: 58  IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTSILLKHKNCPIILNSQQLKQSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I++S     +++ + ++K  +  DN +  +A +S  + Y    ++I  N  Y+L+I+
Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDN-EEERAEDSFKINYFNNEVEISINVYYILDIL 176

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + ISS       +   L+ SN+S+
Sbjct: 177 NVISSK-----NIFLFLNESNNSI 195


>gi|301633590|gb|ADK87144.1| DNA polymerase III, beta subunit [Mycoplasma pneumoniae FH]
          Length = 380

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/384 (15%), Positives = 154/384 (40%), Gaps = 31/384 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+ + ++++ ++L     +I   N + P   ++L++A +  +   A+         +  
Sbjct: 1   MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60

Query: 60  SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           ++D    G + V   +  +++  +++   I   K+      + +    +N  L +  + E
Sbjct: 61  NIDVLEEGEVIVKGKIFSELINGIKEDIIIIQEKDQT----LLVKTKKTNINLNTIDKKE 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLV-----ERTHFAMAT-EEIRYYLNGIFFHINEEDLKL 171
           FP  +  + V   E     +++ +     ++   A++T  E     NG+ F+      ++
Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFN-GSNGKQI 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227
              A+D ++L+V E+    Q     + IV    +  I          + +   +      
Sbjct: 176 FLEASDSYKLSVYEIK---QKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDL 232

Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283
              + + +++  ++   I+  FP    +     + ++ +    L+ A+ R+  ++ + R 
Sbjct: 233 STELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERF 292

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               + +++  L +  +  ++G ++E +    +    ++I  N   LLE ID+  +    
Sbjct: 293 FLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDT---- 348

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDS 366
            DE+      SN    I   ++  
Sbjct: 349 -DEIELYFQGSNKYFLISSNNEPE 371


>gi|119394194|gb|ABL74459.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 195

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 58/204 (28%), Positives = 116/204 (56%), Gaps = 9/204 (4%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+     +E   L AVATDG+R+ + +  I   +    S+I+PRK + E+ ++L+
Sbjct: 1   RYYLNGMLL--KKEKTLLYAVATDGYRMGITKTSIQEDVV-PFSVIIPRKGIVELYKLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            K   ++  + ++ I + IE L  +++LI+G +P+Y  ++    +  + +N   L+Q++ 
Sbjct: 58  IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYTGILLKHKNCPIILNSQQLKQSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I++S     +++ + ++K  +  DN +  +A +S  + Y    ++I  N  Y+L+I+
Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDN-EEERAEDSFKINYFNNEVEISINVYYILDIL 176

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + ISS       +   L+ SN+S+
Sbjct: 177 NVISSK-----NIFLFLNESNNSI 195


>gi|20372920|emb|CAD30325.1| DNA polymerase III subunit protein [Streptomyces caespitosus]
          Length = 117

 Score =  134 bits (339), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 37/121 (30%), Positives = 59/121 (48%), Gaps = 4/121 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI VER  + E +  A R +  +  +PV   +LL+A +G L +     E+    ++ A 
Sbjct: 1   MKIRVERDVLAEAVAWAARSLPARPPVPVLAGLLLKAEEGSLSLSGFDYEVSARVSVDAD 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V+  G++ VS  LL DI R L +       + +  G  V +  G S F L + P  E+P+
Sbjct: 61  VEEDGTVLVSGRLLADICRALPNRP----VEISTDGVRVTVVCGSSRFTLHTLPVEEYPA 116

Query: 121 T 121
            
Sbjct: 117 L 117


>gi|291319939|ref|YP_003515197.1| DNA polymerase III subunit beta [Mycoplasma agalactiae]
 gi|290752268|emb|CBH40239.1| DNA polymerase III, beta chain [Mycoplasma agalactiae]
          Length = 369

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 148/377 (39%), Gaps = 27/377 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI + ++ + +++    R  +  +++     + + AN   ++ +A+     I   I   
Sbjct: 1   MKIIINKNFLDDIIEVVSRFSDPISSLYGMRCIKITANHNFVKFEATNEITNIVKKIKVD 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G + V A+   +I++KL    +I          ++ I   DS + L     
Sbjct: 61  DNKIIVEEDGELLVQANYFKNIIKKLNGFIEIK-----TYFNKMEIKQQDSVYTLTLNEI 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S FP   E   +  F++ +   K  V+   FA +      Y   I F  +    KL   A
Sbjct: 116 SSFPQIDENINIKKFQINTEEFKKAVKNVAFAASNGANLIY-KCINFKSSGN--KLNLAA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLA   +    QI +     V  K V E+  + +    +V +  +  +  +  +  
Sbjct: 173 TDTFRLAYYTIK-TNQILEDFDFSVNAKDVKEL--LPTDVPKTVTMFYNSIKFGVEYDDT 229

Query: 236 SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
           +++ R+ D  + N + +          ++ +  +     ++++ I SS  +   ++L +S
Sbjct: 230 TITARITDLPYHNVEQLFNKAISETKHKITIEKSEFNNLLNKIWINSSADKQNRIELKIS 289

Query: 292 SDKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISS------DEVVDD 344
           + ++ +     ++G +   +        P     N+ YL + I           DE + +
Sbjct: 290 NQEINVYTKIDELGDSNVRTAKFTLEGSPFVFDMNFNYLKDAISITEGETYILIDEKIQN 349

Query: 345 EVVFRLDSSNSSVFIRG 361
            V+F  D+ NS   I  
Sbjct: 350 IVLFSKDNPNSKQIITP 366


>gi|315928459|gb|EFV07771.1| DNA polymerase III beta subunit, central domain protein
           [Campylobacter jejuni subsp. jejuni DFVF1099]
          Length = 247

 Score =  134 bits (338), Expect = 2e-29,   Method: Composition-based stats.
 Identities = 55/273 (20%), Positives = 122/273 (44%), Gaps = 29/273 (10%)

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            F   +FP+    E    F++ SS L   +++   ++ T   +Y LNG F  I  +  K+
Sbjct: 1   MFNHEDFPNFPNTEGKNQFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTD--KI 58

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
             V TD  RLA+    +     +  S  +P+KA+ E+ ++       +++   ++ +   
Sbjct: 59  NFVGTDTKRLAIY--TLEKANNQEFSFSIPKKAIMEMQKLFY---EKIEIFYDQNMLIAK 113

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            E+     +LI+ +FP+Y+ VIP +  +EL  +  +   ++ ++S+++      +KL  +
Sbjct: 114 NENFEFFTKLINDKFPDYEKVIPKTFKQELSFSTEDFIDSLKKISVVTEK----MKLHFN 169

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYN-ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
            DK+     + D  +A   + +        ++    KYLL+ + +I      +++    +
Sbjct: 170 KDKIIFEGISLDNMEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIE-----EEKFTLSV 224

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           +  NS+  ++ +                ++MPM
Sbjct: 225 NEPNSAFIVKSQGLS------------MIIMPM 245



 Score = 44.8 bits (105), Expect = 0.020,   Method: Composition-based stats.
 Identities = 23/239 (9%), Positives = 81/239 (33%), Gaps = 17/239 (7%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +  ++ SD+   L      I+  N         L      +    +  +      +  + 
Sbjct: 18  QFDIDSSDLSRSLKKILPSIDTNNPKYSLNGAFLDIKTDKINFVGTDTKRLAIYTLEKAN 77

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF--YLQSFPESEFP 119
           +   S ++    + ++ +   +  +I +         +   + +  F   L +    ++ 
Sbjct: 78  NQEFSFSIPKKAIMEMQKLFYEKIEIFY-----DQNMLIAKNENFEFFTKLINDKFPDYE 132

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
               + +      ++    + +++                +  H N++ +    ++ D +
Sbjct: 133 KVIPKTFKQELSFSTEDFIDSLKKISVVTEK---------MKLHFNKDKIIFEGISLD-N 182

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
             A  E++I   +++  ++ +  K + + L  +  +  ++ V+   S   +  + LSM 
Sbjct: 183 MEAKTELEIQTGVSEEFNLTIKIKYLLDFLTSIEEEKFTLSVNEPNSAFIVKSQGLSMI 241


>gi|6007546|gb|AAF00953.1|AF183408_1 DNA polymerase III beta subunit [Microcystis aeruginosa PCC 7806]
          Length = 139

 Score =  133 bits (336), Expect = 3e-29,   Method: Composition-based stats.
 Identities = 40/151 (26%), Positives = 78/151 (51%), Gaps = 16/151 (10%)

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL--SSDK 294
           ++ R ++G +P Y  +IP S D+ L ++   L + ++ V+++S  +   VK SL   +D+
Sbjct: 1   VTSRKLEGAYPTYNQLIPKSFDRSLVLDRKQLIRCLELVAVLSDQKNNLVKFSLDSENDR 60

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L + V++PD+G A ESM         DI FN KYL++ +  + +++     +  +L++S 
Sbjct: 61  LSLAVESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQLNAST 115

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             V                +   Y++MP++I
Sbjct: 116 QPVIFTP---------LGGLKMTYLVMPVQI 137


>gi|13507740|ref|NP_109689.1| DNA polymerase III beta subunit [Mycoplasma pneumoniae M129]
 gi|2494195|sp|Q50313|DPO3B_MYCPN RecName: Full=DNA polymerase III subunit beta
 gi|11379480|gb|AAG34739.1|AE000016_1 DNA polymerase III beta subunit [Mycoplasma pneumoniae M129]
 gi|1209517|gb|AAC43645.1| DnaN [Mycoplasma pneumoniae]
          Length = 380

 Score =  133 bits (336), Expect = 4e-29,   Method: Composition-based stats.
 Identities = 57/384 (14%), Positives = 153/384 (39%), Gaps = 31/384 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MK+ + ++++ ++L     +I   N + P   ++L++A +  +   A+         +  
Sbjct: 1   MKVLINKNELNKILKKLNNVIVSNNKMKPYHSYLLIEATEKEINFYANNEYFSAKCTLAE 60

Query: 60  SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           ++D    G + V   +  +++  +++       K+      + +    +N  L +  + E
Sbjct: 61  NIDVLEEGEVIVKGKIFSELINGIKEDIITIQEKDQT----LLVKTKKTNINLNTIDKKE 116

Query: 118 FPSTKEEEYVYSFELASSVLKNLV-----ERTHFAMAT-EEIRYYLNGIFFHINEEDLKL 171
           FP  +  + V   E     +++ +     ++   A++T  E     NG+ F+      ++
Sbjct: 117 FPRIRFNQNVDLKEFDELKIQHSLLTKGLKKIAHAVSTFRESTRKFNGVNFN-GSNGKQI 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227
              A+D ++L+V E+    Q     + IV    +  I          + +   +      
Sbjct: 176 FLEASDSYKLSVYEIK---QKTDPFNFIVETNLLSFINSFNPEGGDLISIFFRKEHKDDL 232

Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283
              + + +++  ++   I+  FP    +     + ++ +    L+ A+ R+  ++ + R 
Sbjct: 233 STELLIKLDNFLINYTSINESFPRVMQLFDFEPETKVTIQKNELKDALQRILTLAQNERF 292

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               + +++  L +  +  ++G ++E +    +    ++I  N   LLE ID+  +    
Sbjct: 293 FLCDMQVTNSHLKINSNVQNIGASLEEVTCLKFEGHKLNIAVNALSLLEHIDSFDT---- 348

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDS 366
            DE+      SN    I   ++  
Sbjct: 349 -DEIELYFQGSNKYFLISSNNEPE 371


>gi|293363919|ref|ZP_06610655.1| DNA polymerase III, beta subunit [Mycoplasma alligatoris A21JP2]
 gi|292552409|gb|EFF41183.1| DNA polymerase III, beta subunit [Mycoplasma alligatoris A21JP2]
          Length = 367

 Score =  133 bits (335), Expect = 5e-29,   Method: Composition-based stats.
 Identities = 60/366 (16%), Positives = 145/366 (39%), Gaps = 22/366 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKIT+++  +  ++      I   +T     ++ L+     L    S   +     I   
Sbjct: 1   MKITIKKEILENVVDFLGTYINSTDTFLAFRYIHLEVTHEKLVFTVSSSTMSARKTINVD 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G + ++  +L +I+R L D   ++     +    +NI+ G + + L +  +
Sbjct: 61  EVNVRVEEEGKVLLNNKVLKNIIRNLSDDITLA-----KKSNIINITEGKTKYNLNTISD 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY-YLNGIFFHINEEDLKLCAV 174
           + FP     E    F++  +     ++   FA+A  +     L  I    N  +++ C  
Sbjct: 116 N-FPIIDFNESENRFQMKKNDFDEAIKNVGFAVADSKSNSSILKAINMFANSNEIRFC-- 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  RL+   V I  ++     I V  + +  ++ I  +   ++ +  + ++  +  E 
Sbjct: 173 GTDSFRLSTFTVKISKEM--NFDISVDARNLKSMM-IKDNTIKNIYIFFNMNKFGVATED 229

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +   L+D  + + + + P    + + +  + L   +++           ++L  +   
Sbjct: 230 TIIQSSLVDIPYHDIKRIFPTEITRNIVIQKSVLLDLINKTIFDFDKDGSKIELKFTKKL 289

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVD----DEVVFR 349
           L  + +  ++G +  S  +   N  P+++ FN ++L E I  +  +  +     + +V  
Sbjct: 290 LTASYEETEVGHSQASTEDFTLNGNPIELTFNSRFLKEAISVLDDELNIGVNLMENIVLL 349

Query: 350 LDSSNS 355
           L   N 
Sbjct: 350 LSKKNP 355


>gi|8037924|gb|AAF71536.1|AF255728_2 DNA polymerase III beta subunit [Streptococcus pyogenes]
          Length = 189

 Score =  133 bits (334), Expect = 6e-29,   Method: Composition-based stats.
 Identities = 45/190 (23%), Positives = 82/190 (43%), Gaps = 11/190 (5%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS- 60
           + ++ R+  +  L    R I  KN IP+   + ++     + +  S  +I I   IP S 
Sbjct: 3   QFSINRTLFIHALNTTKRAISTKNAIPILSSIKIEVTSTGVTLTGSNGQISIENTIPVSN 62

Query: 61  ------VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
                 +   G+I + A    +I+  L D   IS   +     +V ++ G S   L+   
Sbjct: 63  ENAGLLITSPGAILLEASFFINIISSLPD---ISINVKEIEQHQVVLTSGKSEITLKGKD 119

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
             ++P  +E        L + +LK+++  T FA + +E R  L G+   ++       AV
Sbjct: 120 VDQYPRLQEVSTENPLILKTKLLKSIIAETAFAASLQESRPILTGVHIVLS-NHKDFKAV 178

Query: 175 ATDGHRLAVA 184
           ATD HR++  
Sbjct: 179 ATDSHRMSQR 188


>gi|119394196|gb|ABL74460.1| DNA polymerase III beta subunit [Buchnera aphidicola]
          Length = 195

 Score =  131 bits (330), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 57/204 (27%), Positives = 115/204 (56%), Gaps = 9/204 (4%)

Query: 154 RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS 213
           RYYLNG+     +    L AVATDG+R+ + +  I   +    S+I+PRK +  + ++L+
Sbjct: 1   RYYLNGMLLKKVKTL--LYAVATDGYRMGITKTSIQEDVI-PFSVIIPRKGIVGLYKLLN 57

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            K   ++  + ++ I + IE L  +++LI+G +P+Y +++    +  + +N   L+Q++ 
Sbjct: 58  IKTKLIRFLIGKNNIRIYIEELIFTIQLIEGNYPDYISILLKHKNCPIILNSQQLKQSLL 117

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           RV+I++S     +++ + ++K  +  DN + G A +S  + Y    ++I  N  Y+L+I+
Sbjct: 118 RVAILASKNFCGIEIHIKNNKFKVLSDNEEEG-AEDSFKINYFNNEVEISINVYYILDIL 176

Query: 334 DNISSDEVVDDEVVFRLDSSNSSV 357
           + ISS       +   L+ SN+S+
Sbjct: 177 NVISSK-----NIFLFLNESNNSI 195


>gi|89512206|gb|ABD73999.1| DNA polymerase III subunit beta [Mycobacterium avium subsp.
           paratuberculosis]
          Length = 143

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 30/142 (21%), Positives = 55/142 (38%), Gaps = 5/142 (3%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K  + R    + +    + +  +  +PV   VLL   D  L I     E+     + A +
Sbjct: 7   KFRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGFDYEVSAEAQVAAEI 66

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS+ VS  LL DIVR L +     +      G  V ++ G + F L +    ++P+ 
Sbjct: 67  ASPGSVLVSGRLLSDIVRALPNKPIDFYVD----GNRVALNCGSARFSLPTMAVEDYPTL 122

Query: 122 KEEEYVYSFELASSVLKNLVER 143
                  +  L + +    + +
Sbjct: 123 PTLPEE-TGTLPADLFAEAIGQ 143



 Score = 39.4 bits (91), Expect = 0.95,   Method: Composition-based stats.
 Identities = 28/144 (19%), Positives = 59/144 (40%), Gaps = 11/144 (7%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F L      + V     ++ +      L+G+     +E L +     D    A A+V   
Sbjct: 8   FRLVRESFADAVSWVAKSLPSRPAVPVLSGVLLSGTDEGLTISGF--DYEVSAEAQV--A 63

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPN 248
           A+IA   S++V  + + +I+R L +K   +   +  +R+ LN  S   S+  +   ++P 
Sbjct: 64  AEIASPGSVLVSGRLLSDIVRALPNK--PIDFYVDGNRVALNCGSARFSLPTMAVEDYPT 121

Query: 249 YQNVIPCSNDKELRVNCTNLRQAV 272
               +P   ++   +      +A+
Sbjct: 122 ----LPTLPEETGTLPADLFAEAI 141


>gi|148377270|ref|YP_001256146.1| DNA polymerase III, beta chain [Mycoplasma agalactiae PG2]
 gi|148291316|emb|CAL58699.1| DNA polymerase III, beta chain [Mycoplasma agalactiae PG2]
          Length = 369

 Score =  131 bits (329), Expect = 2e-28,   Method: Composition-based stats.
 Identities = 70/377 (18%), Positives = 146/377 (38%), Gaps = 27/377 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V +  + +++    R  +  +++     + + AN   ++ +A+     I   I   
Sbjct: 1   MKIIVNKIFLDDIIEVVSRFSDPISSLYGMRCIKITANHNFVKFEATNEITNIVRKIKVD 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G + V A+   +I++KL    +I          ++ I   DS + L     
Sbjct: 61  DNKIIVEEDGELLVQANYFKNIIKKLNGFIEIK-----TYFNKMEIKQQDSVYTLTLNEI 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
           S FP   E   +  F++ +   K  V+   FA +      Y   I F  +    KL   A
Sbjct: 116 SSFPQIDENINIKKFQINTEEFKKAVKNVAFAASNGANLIY-KCINFKSSGN--KLNLAA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLA   +    QI +     V  K V E+  + +    +V +  +  +  +     
Sbjct: 173 TDTFRLAYYTIK-TNQILEDFDFSVNAKDVKEL--LPTDAPKTVTMFYNSIKFGVEYNDT 229

Query: 236 SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLS 291
           +++ R+ D  + N + +          ++ +  +     ++++ I SS  +   ++L +S
Sbjct: 230 TITARITDLPYHNVEQLFNKAISETKHKITIEKSEFNNLLNKIWINSSADKQNRIELKIS 289

Query: 292 SDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISS------DEVVDD 344
           + ++ +     ++G +  ++              N+ YL + I           DE + +
Sbjct: 290 NQEINVYTKIDELGDSNVKTTKFTLEGSSFVFDMNFNYLKDAISITEGETYILIDEKIQN 349

Query: 345 EVVFRLDSSNSSVFIRG 361
            V+F  D+ NS   I  
Sbjct: 350 IVLFSKDNPNSKQIITP 366


>gi|168178719|ref|ZP_02613383.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916]
 gi|182671283|gb|EDT83257.1| DNA polymerase III, beta subunit [Clostridium botulinum NCTC 2916]
          Length = 329

 Score =  129 bits (326), Expect = 5e-28,   Method: Composition-based stats.
 Identities = 56/308 (18%), Positives = 124/308 (40%), Gaps = 46/308 (14%)

Query: 77  IVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSV 136
           +++ L   A++   ++        I  G+       +  S+          +   +    
Sbjct: 66  VLKLLPKDAKVIITED-------TIISGNRKIK---YIPSQLVDMPINIENHLITIPIDE 115

Query: 137 LKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP 196
           LK+L+    +AMA +EIR  LNG+  + +E       +A DG+RLA+ + +   +     
Sbjct: 116 LKHLLS-CSYAMAKDEIRLILNGLCINNSE------FIALDGYRLALRKGNFQTKEP--- 165

Query: 197 SIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
            +IVP   +  I ++   +D  VK+  +++ +      L +      G++ NY+++IP  
Sbjct: 166 -VIVPADLIKVIKKVKYERD--VKIYYNDNYVKFKFGDLEVIGNRQIGDYINYKSIIPED 222

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
            + ++ +   ++   +         +     L    +KL +  +N ++    ES+ +   
Sbjct: 223 YNTKVTLETKSILDILK---DYKKNKFNIADLDFQKNKLIIKANN-EVATVEESITIELQ 278

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             P++I FN  YL++   N        D     L    + + I+            + N 
Sbjct: 279 GEPLEISFNADYLIDAFKN-------YDNATLELTYCVNPMVIK------------ENNK 319

Query: 377 FYVLMPMR 384
             +++P+R
Sbjct: 320 LDLVLPVR 327


>gi|108885075|ref|NP_072661.2| DNA polymerase III, beta subunit [Mycoplasma genitalium G37]
 gi|255660026|ref|ZP_05405435.1| DNA polymerase III, beta subunit [Mycoplasma genitalium G37]
 gi|84626162|gb|AAC71217.2| DNA polymerase III, beta subunit [Mycoplasma genitalium G37]
 gi|166078983|gb|ABY79601.1| DNA polymerase III, beta subunit [synthetic Mycoplasma genitalium
           JCVI-1.0]
          Length = 380

 Score =  128 bits (321), Expect = 2e-27,   Method: Composition-based stats.
 Identities = 63/387 (16%), Positives = 160/387 (41%), Gaps = 31/387 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTI-PVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
           MKI + +S++ ++L     +I   N I P   + L++A +  +   A+     +   +  
Sbjct: 1   MKILINKSELNKILKKMNNVIISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNK 60

Query: 60  SVD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           ++D    GS+ V   +  D++  +++       K+      + +    ++  L +   +E
Sbjct: 61  NIDILEQGSLIVKGKIFNDLINGIKEEIITIQEKDQT----LLVKTKKTSINLNTINVNE 116

Query: 118 FPST-----KEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKL 171
           FP        +      F++  S+L   +++   +++   EI    NG+ F+      ++
Sbjct: 117 FPRIRFNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFN-GSNGKEI 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227
              A+D ++L+V E+    Q  +    I+    +  I      +D S+     +      
Sbjct: 176 FLEASDTYKLSVFEIK---QETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSF 232

Query: 228 ---IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRI 283
              + +++++  +S   ++ +FP          + ++ V    L+ A+ R+  ++ + R 
Sbjct: 233 STEMLISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERT 292

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
               + ++S +L +     ++G ++E ++   +    ++I FN   LL+ I++  S+   
Sbjct: 293 FLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESN--- 349

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNN 369
             E+ F    ++    I  K +     
Sbjct: 350 --EINFDFQGNSKYFLITSKSEPELKQ 374


>gi|213021808|ref|ZP_03336255.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
          enterica serovar Typhi str. 404ty]
          Length = 97

 Score =  127 bits (320), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 31/95 (32%), Positives = 50/95 (52%), Gaps = 1/95 (1%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1  MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVTLS 60

Query: 61 V-DVCGSITVSAHLLYDIVRKLQDGAQISFFKENE 94
               G+ TV A   +DI R L +GA+I+   E +
Sbjct: 61 QPHEPGATTVPARKFFDICRGLPEGAEIAVQLEGD 95


>gi|294155302|ref|YP_003559686.1| DNA polymerase III, beta subunit [Mycoplasma crocodyli MP145]
 gi|291599911|gb|ADE19407.1| DNA polymerase III, beta subunit [Mycoplasma crocodyli MP145]
          Length = 367

 Score =  127 bits (319), Expect = 3e-27,   Method: Composition-based stats.
 Identities = 59/346 (17%), Positives = 146/346 (42%), Gaps = 18/346 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEIT-----G 55
           MK T++++ + +++      I   +T     ++ L+  +  L   A+   +         
Sbjct: 1   MKFTIKKNILEQVVEFLGTYINVADTFLAFRYINLEVTNEKLIFTAASSTMSARKILNVD 60

Query: 56  AIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   V+  G   ++  ++ +I++ L +   IS     + G  +NIS G++ + L +  +
Sbjct: 61  EVNIKVEEEGFALLNCKVVKNIIKNLSNNVSIS-----KRGNIINISEGNTKYNLNTISD 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLN-GIFFHINEEDLKLCAV 174
             +P+ +       F++  +  +  ++   FA+   +    ++  I  + N  +L+ C  
Sbjct: 116 R-YPTIEFGNVENKFQMNKNDFEEGIKNVAFAVGDPKNNSAISKAINMYANNNELRFC-- 172

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
            TD  RL+   V I   I+    I V  + +  ++ I  +    + V  + +R  +  E 
Sbjct: 173 GTDSFRLSTYTVKISKNIS--FDISVDARNMKNMI-IKDNNVKRINVFYTLNRFGIETED 229

Query: 235 LSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
             +   L+D  + + + + P    + + +    L   +++    S      ++L+ +S+ 
Sbjct: 230 TIIQSSLVDLAYHDIKRIFPTDITRNIVIQKNVLMDIINKTIFDSDNTGAKIELNFTSNL 289

Query: 295 LCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSD 339
           L  T +  ++G +  S  +      P+++ FN K+L E I  +  +
Sbjct: 290 LTATYEEAEVGHSQASTDDFKLIGDPIELTFNSKHLREAIGVVEGE 335


>gi|257437734|ref|ZP_05613489.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
 gi|257200041|gb|EEU98325.1| DNA polymerase III, beta subunit [Faecalibacterium prausnitzii
           A2-165]
          Length = 173

 Score =  127 bits (319), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 36/151 (23%), Positives = 72/151 (47%), Gaps = 3/151 (1%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
            I  +++ +   +    + +  ++TIPV   +LL+A    L +     E+ I   I A+V
Sbjct: 19  NIICDKTLLSAAIDGVSKAVTLRSTIPVLEGILLKAEGFQLTLTGYDLEMGIVTTIDANV 78

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              G + ++A LL  +V ++  G       EN    +  I  G + F +QS   ++FP  
Sbjct: 79  KEPGEVVLNAKLLSSMVSRMPSGQINIQSAEN---GKTTIQSGVAQFEIQSMNPTDFPEL 135

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEE 152
                  +  + + VL++++ERT +A++ +E
Sbjct: 136 PNTGAEETLNIKTGVLRDMIERTLYAVSQDE 166


>gi|270684738|ref|ZP_06222840.1| DNA polymerase III, beta subunit domain protein [Haemophilus
           influenzae HK1212]
 gi|270316195|gb|EFA28165.1| DNA polymerase III, beta subunit domain protein [Haemophilus
           influenzae HK1212]
          Length = 136

 Score =  126 bits (318), Expect = 4e-27,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 67/139 (48%), Gaps = 4/139 (2%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPASVD 62
           ++ R ++L+ L   C ++  +  IPV  +VLLQ  D  L I  +  E+E  +    +S  
Sbjct: 1   SISRENLLKPLQQVCGVLSNRPNIPVLNNVLLQIEDNRLTITGTDLEVELSSQTQLSSSS 60

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G+ T+ A    DI R L D ++I+   E +      +  G S F L + P  E+P+  
Sbjct: 61  ENGTFTIPAKKFLDICRTLSDESEITVIFEQD---RALVQSGRSRFTLATQPAEEYPNLT 117

Query: 123 EEEYVYSFELASSVLKNLV 141
           + +    FEL  + L+ L+
Sbjct: 118 DWQSEVDFELPQNTLRRLI 136



 Score = 39.1 bits (90), Expect = 1.2,   Method: Composition-based stats.
 Identities = 20/109 (18%), Positives = 43/109 (39%), Gaps = 5/109 (4%)

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200
           +++    ++       LN +   I  ED +L    TD   + ++    ++  ++  +  +
Sbjct: 11  LQQVCGVLSNRPNIPVLNNVLLQI--EDNRLTITGTD-LEVELSSQTQLSSSSENGTFTI 67

Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDGEFPN 248
           P K   +I R LS  +S + V   + R  +       +       E+PN
Sbjct: 68  PAKKFLDICRTLSD-ESEITVIFEQDRALVQSGRSRFTLATQPAEEYPN 115


>gi|313678136|ref|YP_004055876.1| DNA polymerase III subunit beta [Mycoplasma bovis PG45]
 gi|312950639|gb|ADR25234.1| DNA polymerase III, beta subunit [Mycoplasma bovis PG45]
          Length = 369

 Score =  125 bits (315), Expect = 1e-26,   Method: Composition-based stats.
 Identities = 72/377 (19%), Positives = 146/377 (38%), Gaps = 27/377 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI V ++ + +++    R  +  +++     + + AN   ++ +AS     I   I   
Sbjct: 1   MKIIVNKNFLDDIIEIVSRFSDPISSLYGMRCIKITANKNFVKFEASNEITNIIKKINVD 60

Query: 61  -----VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V+  G + V A+    I++KL    +I          ++ I   DS + L     
Sbjct: 61  DSKIIVEEDGELLVQANYFKSIIKKLNGFIEIK-----TYFNKMEIRQQDSVYTLTLNEL 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
             FP   E   +  F + +   K  V+   FA +      Y   I F  +    KL   A
Sbjct: 116 ISFPQIDENINIKKFNINTEEFKKAVKNVAFAASNGANLIY-KCINFKSSGN--KLSLAA 172

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  RLA   +    QI       V  K V E+  + +     V +  +  +  +  ++ 
Sbjct: 173 TDTFRLAYYSIK-TDQILDDFDFSVNAKDVKEL--LPADAPKIVTMFYNSIKFGVEYDNT 229

Query: 236 SMSVRLIDGEFPNYQNVIPC---SNDKELRVNCTNLRQAVDRVSI-MSSVRIQAVKLSLS 291
            ++ R+ D  + N + +      +   ++ +  +     ++++ I  SS +   ++L +S
Sbjct: 230 IITARITDLPYHNVEQLFNKAISNTKHKITIEKSEFNNLLNKIWINSSSDKQNRIELKIS 289

Query: 292 SDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFNYKYLLEIIDNISS------DEVVDD 344
           + ++ +     ++G +  ++     +  P     N+ YL E I           DE V +
Sbjct: 290 NSEINIYTKLDELGDSNVKTTKFVLDGSPFVFDMNFNYLKEAIAITEGETYILIDEKVQN 349

Query: 345 EVVFRLDSSNSSVFIRG 361
            V+F  ++ NS   I  
Sbjct: 350 IVLFSKENPNSKQIITP 366


>gi|332829044|gb|EGK01708.1| hypothetical protein HMPREF9455_01856 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 180

 Score =  124 bits (313), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 45/184 (24%), Positives = 83/184 (45%), Gaps = 12/184 (6%)

Query: 203 KAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELR 262
           K    +   +   D  + + ++ + +     S S+   L++G +PNY++VIP +NDK L 
Sbjct: 6   KIATILKGSIKPSDELINIFINGNSVRFEYGSESIVATLLEGNYPNYRSVIPQNNDKVLS 65

Query: 263 VNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK-AIESMNVYYNECPMD 321
           +  + L  A+ RVS+ ++     VKL LS+D + ++  + D    A E++   Y+   + 
Sbjct: 66  IGKSELNGAIKRVSVFANQSSSLVKLELSNDIIKLSAQDIDFSTAADETVACEYSNKQIA 125

Query: 322 ICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLM 381
           I F    L E+I  I +       +       + +  I   D  S +         Y+LM
Sbjct: 126 IGFKGHLLTELISAIPT-----PNMQMSFSDPSRATLITPVDDKSGDQL------TYLLM 174

Query: 382 PMRI 385
           PM +
Sbjct: 175 PMML 178


>gi|71893361|ref|YP_278807.1| DNA polymerase III subunit beta [Mycoplasma hyopneumoniae J]
 gi|71851488|gb|AAZ44096.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae J]
          Length = 378

 Score =  124 bits (312), Expect = 2e-26,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 140/357 (39%), Gaps = 32/357 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+E+  I   +      I      P      L+     L I ++  E+     I   
Sbjct: 1   MKFTIEKKIIEWQIERMQSAILNNINSP-LSSFFLKLTRSGLFIISTNSELSYKVFINKK 59

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               +   GS  +    L D++RK     Q+SF     +G+E+ +   D+ F   +   S
Sbjct: 60  DLIEIHDVGSCLIDGVFLRDVIRK--SDKQLSFHL---IGSELKVFWEDALFSKTTRDSS 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP    E+      + +   K  ++ T FA      +  L+ I      E   L   AT
Sbjct: 115 FFPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  R A  +++I  +     +I V  K + +   I    D  +++++  S+I    ++L+
Sbjct: 173 DTSRFASEKIEISNKS--RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLT 228

Query: 237 MSVRLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +  R+   E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LSLS + 
Sbjct: 229 IQSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNA 288

Query: 295 LCMTVDNPDMGKAIESM--------------NVYYNECPMDICFNYKYLLEIIDNIS 337
           L   +   D G++                  +  ++     +  NY+YL + I    
Sbjct: 289 LKGYISQYDSGQSNVQTKNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 345


>gi|54019971|ref|YP_115517.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 232]
 gi|53987144|gb|AAV27345.1| DNA polymerase III, beta chain [Mycoplasma hyopneumoniae 232]
          Length = 378

 Score =  123 bits (309), Expect = 5e-26,   Method: Composition-based stats.
 Identities = 70/357 (19%), Positives = 140/357 (39%), Gaps = 32/357 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+E+  I   +      I      P      L+     L I ++  E+     I   
Sbjct: 1   MKFTIEKKIIEWQIERMQSAILNNVNSP-LSSFFLKLTRSGLFIISTNSELSYKVFINKK 59

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               +   GS  +    L D++RK     Q+SF     +G+E+ +   D+ F   +   S
Sbjct: 60  DLIEIYDVGSCLIDGVFLRDVIRK--SDKQLSFHL---IGSELKVFWEDAIFSKTTRDSS 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP    E+      + +   K  ++ T FA      +  L+ I      E   L   AT
Sbjct: 115 FFPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  R A  +++I  +     +I V  K + +   I    D  +++++  S+I    ++L+
Sbjct: 173 DTTRFASEKIEISNKS--RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLT 228

Query: 237 MSVRLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +  R+   E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LS+S + 
Sbjct: 229 IQSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSMSKNA 288

Query: 295 LCMTVDNPDMGKAIESM--------------NVYYNECPMDICFNYKYLLEIIDNIS 337
           L   +   D G++                  +  ++     +  NY+YL + I    
Sbjct: 289 LKGYISQYDSGQSNVQTKNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 345


>gi|72080344|ref|YP_287402.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448]
 gi|71913468|gb|AAZ53379.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 7448]
          Length = 378

 Score =  123 bits (308), Expect = 6e-26,   Method: Composition-based stats.
 Identities = 71/357 (19%), Positives = 140/357 (39%), Gaps = 32/357 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK T+E+  I   +      I      P      L+     L I ++  E+     I   
Sbjct: 1   MKFTIEKKIIEWQIERMQSAILNNINSP-LSSFFLKLTRSGLFIISTNSELSYKVFINKK 59

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               +   GS  +    L D++RK     Q+SF     +G+E+ +   D+ F   +   S
Sbjct: 60  DLIEIYDVGSCLIDGVFLRDVIRK--SDKQLSFHL---IGSELKVFWEDALFSKTTRDSS 114

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
            FP    E+      + +   K  ++ T FA      +  L+ I      E   L   AT
Sbjct: 115 FFPEINFEQKGIKLTVNAKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSAT 172

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D  R A  +++I  +     +I V  K + +   I    D  +++++  S+I    ++L+
Sbjct: 173 DTSRFASEKIEISNKS--RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLT 228

Query: 237 MSVRLIDGEFPNYQNVIPCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
           +  R+   E+ +  N++P  ++    L +N  ++   +D+ +I++  +   + LSLS + 
Sbjct: 229 IQSRIFTIEYKDISNILPKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNA 288

Query: 295 LCMTVDNPDMGKAIESM--------------NVYYNECPMDICFNYKYLLEIIDNIS 337
           L   +   D G++                  +  ++     +  NY+YL + I    
Sbjct: 289 LKGYISQYDSGQSNVQTKNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 345


>gi|255028896|ref|ZP_05300847.1| DNA polymerase III subunit beta [Listeria monocytogenes LO28]
          Length = 146

 Score =  121 bits (305), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 38/147 (25%), Positives = 63/147 (42%), Gaps = 11/147 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1   MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 59  ------ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQS 112
                   V+  G I + +    DIVR+L +        E     + NIS G ++F L  
Sbjct: 61  ENDEVIVEVESFGGIVLQSKYFGDIVRRLPEENV---EIEVTSNYQTNISSGQASFTLNG 117

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKN 139
               E+P   E     + ++  +VLKN
Sbjct: 118 LDPMEYPKLPEVTDGKTIKIPINVLKN 144



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 25/145 (17%), Positives = 61/145 (42%), Gaps = 7/145 (4%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV--- 186
           F +    L   V     A++       L GI   +N+E + L    +D    A   +   
Sbjct: 3   FVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLIEN 62

Query: 187 -DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
            +++ ++     I++  K  G+I+R L  ++  ++V+ S  + +++    S ++  +D  
Sbjct: 63  DEVIVEVESFGGIVLQSKYFGDIVRRLPEENVEIEVT-SNYQTNISSGQASFTLNGLD-- 119

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQ 270
              Y  +   ++ K +++    L+ 
Sbjct: 120 PMEYPKLPEVTDGKTIKIPINVLKN 144


>gi|46204942|ref|ZP_00049263.2| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Magnetospirillum magnetotacticum MS-1]
          Length = 113

 Score =  121 bits (304), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 40/114 (35%), Positives = 64/114 (56%), Gaps = 1/114 (0%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M +TV+R  +L  L    RI+ER+NTIP+  +V L      L ++ +  +IE      A+
Sbjct: 1   MLLTVQREALLRPLAVTHRIVERRNTIPILSNVRLGTEGTTLTVRGTDLDIEAASTCEAT 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           +D  G++TV A  L DIV KL  GA+I+  ++   G ++ +S G + F L + P
Sbjct: 61  IDEPGALTVPAQTLRDIVHKLPQGAEITLRQDAGSG-QLALSAGRARFKLPTLP 113


>gi|319440486|ref|ZP_07989642.1| DNA polymerase III subunit beta [Corynebacterium variabile DSM
           44702]
          Length = 136

 Score =  121 bits (303), Expect = 2e-25,   Method: Composition-based stats.
 Identities = 30/126 (23%), Positives = 53/126 (42%), Gaps = 4/126 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
            TV + D    L    R +  K + P+   VL++A +  L++     E+     + A V 
Sbjct: 14  FTVAKDDFSSALAWVARSLPSKASQPILRGVLIEATEDGLQLSGFDREVSTKVRVSADVA 73

Query: 63  VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
             G I V+  L  +I+  L D       + +  GT+V ++ G S+F L +    ++P   
Sbjct: 74  EPGRILVAGRLASNIIGALPDKP----VRIDYDGTKVLVNCGSSHFELPAMTIDDYPVLP 129

Query: 123 EEEYVY 128
           E     
Sbjct: 130 EFPATA 135



 Score = 37.1 bits (85), Expect = 4.3,   Method: Composition-based stats.
 Identities = 20/113 (17%), Positives = 45/113 (39%), Gaps = 6/113 (5%)

Query: 125 EYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVA 184
           +   SF +A     + +     ++ ++  +  L G+     E+ L+L        R    
Sbjct: 9   QQSVSFTVAKDDFSSALAWVARSLPSKASQPILRGVLIEATEDGLQLSGFD----REVST 64

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM 237
           +V + A +A+   I+V  +    I+  L   D  V++    +++ +N  S   
Sbjct: 65  KVRVSADVAEPGRILVAGRLASNIIGALP--DKPVRIDYDGTKVLVNCGSSHF 115


>gi|88658239|ref|YP_507796.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis
           str. Arkansas]
 gi|88599696|gb|ABD45165.1| DNA polymerase III, beta subunit, truncation [Ehrlichia chaffeensis
           str. Arkansas]
          Length = 182

 Score =  120 bits (302), Expect = 3e-25,   Method: Composition-based stats.
 Identities = 63/179 (35%), Positives = 97/179 (54%), Gaps = 6/179 (3%)

Query: 70  SAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYS 129
           SA LLYDIV+KL +  +I FF   +    + I  G + F+L      +FP  +  E    
Sbjct: 2   SAQLLYDIVKKLPNDIEIKFFIGED--GRLTIKCGRTEFFLPVVDIEKFPIIENNELQNK 59

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
           F L  S L +L  +T FA++ EE R+ LNG++ H +     LC  ATDGHRL++ ++   
Sbjct: 60  FTLQVSELVSLFGKTKFAISIEESRFNLNGLYVHTSNN--ILCCAATDGHRLSLTKLSQS 117

Query: 190 AQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
             +     IIVP+K V EIL+I+S  S +  + +SLS+ +I    +   +  ++ID  F
Sbjct: 118 QNVLSNFGIIVPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTF 176


>gi|92112114|gb|ABE73748.1| DNA polymerase subunit B [Azoarcus communis]
          Length = 125

 Score =  119 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 39/139 (28%), Positives = 72/139 (51%), Gaps = 14/139 (10%)

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P+YQ VIP ++   + +    L  A+ R +I+++ + + V++ L    L +   N +  +
Sbjct: 1   PDYQRVIPQNHPGLVALPRQALLSALQRAAILTNEKFRGVRMVLDDGALRIVSSNSEQEE 60

Query: 307 AIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
           A E + + Y+   +DI FN  YLL++++N+SS     + + +R +  NSS  I     + 
Sbjct: 61  AQEELEIDYHGAKLDIGFNVTYLLDVLNNLSS-----ETIEWRFNDGNSSALITLPGNE- 114

Query: 367 KNNKDNKVNAFYVLMPMRI 385
                   +  YV+MPMRI
Sbjct: 115 --------HFKYVVMPMRI 125


>gi|255019006|ref|ZP_05291132.1| DNA polymerase III subunit beta [Listeria monocytogenes FSL F2-515]
          Length = 143

 Score =  119 bits (300), Expect = 5e-25,   Method: Composition-based stats.
 Identities = 31/151 (20%), Positives = 68/151 (45%), Gaps = 14/151 (9%)

Query: 237 MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK--LSLSSDK 294
              RL++G +P+   +IP     EL +N     QA+DR S+++      V   ++L + +
Sbjct: 2   FYSRLLEGSYPDTSRLIPTDTKSELVINSKAFLQAIDRASLLARENRNNVIKLMTLENGQ 61

Query: 295 LCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           + ++ ++P++G   E++    +    + I FN KY+++ +          D++      +
Sbjct: 62  VEVSSNSPEVGNVSENVFSQSFTGEEIKISFNGKYMMDALRAFEG-----DDIQISFSGT 116

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
                +R KD  + N          ++ P+R
Sbjct: 117 MRPFVLRPKDAANPNEI------LQLITPVR 141


>gi|33322985|gb|AAQ07229.1|AF496537_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 153

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 36/156 (23%), Positives = 76/156 (48%), Gaps = 9/156 (5%)

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           + E+ +I+   D  +KV L +S+I    E+LS   RL++G +P+   ++P  +   ++  
Sbjct: 1   LQELAQIIGDADQDIKVYLGDSQIRFEFENLSFYTRLLEGAYPDVDRLLPTESTTSVQFA 60

Query: 265 CTNLRQAVDRVSIMS-SVRIQAVKLSLS--SDKLCMTVDNPDMGKAIESM-NVYYNECPM 320
            ++L Q + R S+++ + R  AV+++L+     + ++ ++P++GK  E +         +
Sbjct: 61  VSDLMQTLSRASLLTHANRTNAVQMTLNVADQTVLVSGNSPEVGKIEEEVGFSSLTGRDL 120

Query: 321 DICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
            I FN  Y+   +        V D V+     S   
Sbjct: 121 TISFNPDYMAAALRA-----SVTDSVIINFTESLRP 151


>gi|207093110|ref|ZP_03240897.1| DNA polymerase III subunit beta [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 227

 Score =  119 bits (299), Expect = 7e-25,   Method: Composition-based stats.
 Identities = 44/235 (18%), Positives = 104/235 (44%), Gaps = 20/235 (8%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA--QIAKMPSIIVPRKAVGEILRILSS 214
           L GI    +++   L  V TD  RL+  +++ ++     +  S I+P++A+ EIL++   
Sbjct: 7   LAGILMQFDQKHQTLSVVGTDTKRLSYTQLEKISIHSTEEDISCILPKRALLEILKLFY- 65

Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
              +           +  E+ +   +LIDG +P+YQ ++P        +     ++++  
Sbjct: 66  --ENFSFKSDGMLAVVENETHTFFTKLIDGNYPDYQKILPKEYTSSFTLGKEEFKESIKL 123

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPD-MGKAIESMNVYYN---ECPMDICFNYKYLL 330
            S +SS     +KL+L  +       + +    A  S+ +      E    +  N K+ L
Sbjct: 124 CSSLSST----IKLTLEKNNALFESLDSEHSETAKTSVEIEKGLDIEKAFHLGVNAKFFL 179

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           E ++ + +      + V + +  +S   I+    + +++ + K++   ++MP+ +
Sbjct: 180 EALNALGTT-----QFVLKCNEPSSPFLIQESLDEKQSHLNAKIST--LMMPITL 227


>gi|225550400|ref|ZP_03771349.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
 gi|225379554|gb|EEH01916.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 2
           str. ATCC 27814]
          Length = 379

 Score =  119 bits (299), Expect = 8e-25,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 141/352 (40%), Gaps = 13/352 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKISTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +    G I V+A +L  ++ KL+D + +    +      + I   +    + +     F
Sbjct: 61  FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117

Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174
           PS     E      L   +++ +  +    +      E    ++G+       D +L A+
Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233
            TD  + +      + +  K        K + E+LR +   ++ +      ++ +   + 
Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
              +  R+IDG +PN  ++   +N +K    +   L + ++R ++I+   +   + + + 
Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++  +++   ++G   E M  +  +   ++   N   L  ++ N  +++V 
Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDVT 349


>gi|167972399|ref|ZP_02554676.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
 gi|184209326|gb|EDU06369.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 5
           str. ATCC 27817]
          Length = 379

 Score =  119 bits (298), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 141/352 (40%), Gaps = 13/352 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +    G I V+A +L  ++ KL+D + +    +      + I   +    + +     F
Sbjct: 61  FEHFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117

Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174
           PS     E      L   +++ +  +    +      E    ++G+       D +L A+
Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233
            TD  + +      + +  K        K + E+LR +   ++ +      ++ +   + 
Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
              +  R+IDG +PN  ++   +N +K    +   L + ++R ++I+   +   + + + 
Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++  +++   ++G   E M  +  +   ++   N   L  ++ N  +++V 
Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDVT 349


>gi|167974938|ref|ZP_02557215.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|167975179|ref|ZP_02557456.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|167989088|ref|ZP_02570759.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|168362255|ref|ZP_02695434.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|195867361|ref|ZP_03079365.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198273299|ref|ZP_03205835.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225551555|ref|ZP_03772501.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
 gi|171903556|gb|EDT49845.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 13
           str. ATCC 33698]
 gi|188018688|gb|EDU56728.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 7
           str. ATCC 27819]
 gi|188997710|gb|EDU66807.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 11
           str. ATCC 33695]
 gi|195660141|gb|EDX53521.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 12
           str. ATCC 33696]
 gi|195660837|gb|EDX54090.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 9
           str. ATCC 33175]
 gi|198249819|gb|EDY74599.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 4
           str. ATCC 27816]
 gi|225379370|gb|EEH01735.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 8
           str. ATCC 27618]
          Length = 379

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/352 (15%), Positives = 141/352 (40%), Gaps = 13/352 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +    G I V+A +L  ++ KL+D + +    +      + I   +    + +     F
Sbjct: 61  FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117

Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174
           PS     E      L   +++ +  +    +      E    ++G+       D +L A+
Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233
            TD  + +      + +  K        K + E+LR +   ++ +      ++ +   + 
Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
              +  R+IDG +PN  ++   +N +K    +   L + ++R ++I+   +   + + + 
Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVV 342
           +++  +++   ++G   E M  +  +   ++   N   L  ++ N  +++V 
Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDVT 349


>gi|209554064|ref|YP_002284498.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
 gi|209541565|gb|ACI59794.1| DNA polymerase III, beta subunit [Ureaplasma urealyticum serovar 10
           str. ATCC 33699]
          Length = 379

 Score =  118 bits (297), Expect = 1e-24,   Method: Composition-based stats.
 Identities = 54/351 (15%), Positives = 141/351 (40%), Gaps = 13/351 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ V    ++E +  +  I    N   +   VL++ N+  +  K +  ++     I   
Sbjct: 1   MEVFVSIKKLIEAMKFSTTIANTNNANALLLGVLIEVNENKITFKTTNNQVSGYKEISDG 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +    G I V+A +L  ++ KL+D + +    +      + I   +    + +     F
Sbjct: 61  FEYFSSGKILVTAKILLGLISKLKDKSVLLKQVD---TNILLIKTENFETQINTMNIESF 117

Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174
           PS     E      L   +++ +  +    +      E    ++G+       D +L A+
Sbjct: 118 PSLNFSLEDYVKISLPHQIMQEINAKVLPNVLNSQGIEKIQPISGVLIDTETLDNQLIAI 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233
            TD  + +      + +  K        K + E+LR +   ++ +      ++ +   + 
Sbjct: 178 GTDKIKASCLTKPYLGEKFKFIISYSTMKLIMEVLRNVEYSNNQIVDFYVRNKSLVFKVN 237

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
              +  R+IDG +PN  ++   +N +K    +   L + ++R ++I+   +   + + + 
Sbjct: 238 DAILQTRMIDGVYPNVYSIFNETNEEKNYVFDRRLLIEIIERGMNIVMQEQNPKISIKIE 297

Query: 292 SDKLCMTVDNPDMGKAIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEV 341
           +++  +++   ++G   E M  +  +   ++   N   L  ++ N  +++V
Sbjct: 298 NNEAEISLTTFEIGNMKEKMPIINLSNANVEFIVNPSLLAHVLKNFENNDV 348


>gi|222874687|gb|EEF11818.1| predicted protein [Populus trichocarpa]
          Length = 296

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 37/143 (25%), Positives = 69/143 (48%), Gaps = 5/143 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +   +  +L +L     I+ER++T+P+  +VL++     L++  S  EI+I        D
Sbjct: 157 LKATQDKVLAVLQSVSGIVERRHTLPILANVLIKKTGNALQLTTSDLEIQIRTTAELGGD 216

Query: 63  V-CGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               + TV A  L DI++ +     +S   +     ++ +  G S F LQ+ P  +FP  
Sbjct: 217 TGDFTTTVGARKLIDILKTMPGDQTVSLETQ---QAKMVLKGGKSRFTLQTLPAEDFPLV 273

Query: 122 KE-EEYVYSFELASSVLKNLVER 143
           +E   +  SF +   VLK+L+ +
Sbjct: 274 QEAAAFGPSFSVPQKVLKDLLGQ 296


>gi|302561988|ref|ZP_07314330.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000]
 gi|302479606|gb|EFL42699.1| DNA polymerase subunit III beta [Streptomyces griseoflavus Tu4000]
          Length = 365

 Score =  118 bits (296), Expect = 2e-24,   Method: Composition-based stats.
 Identities = 60/269 (22%), Positives = 104/269 (38%), Gaps = 35/269 (13%)

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
            EE      L+ S L   ++   FA  T+     L GI F +  ED  LC VATD +R+A
Sbjct: 124 SEETAVRLSLSGSALAAALDAVRFAAGTDPGLPMLGGILFDV--EDGALCLVATDRYRMA 181

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           VA+            + VP   + + +R L   D  V++S+   R+ L       + + +
Sbjct: 182 VAQAAAEGPAGSRVRVTVP-LPLADAMRALLEGDDPVRLSVDGDRVTLETGDRQTAGQCL 240

Query: 243 DGEFPNYQNVIPCSNDKELRVNCTNLRQAVD----RVSIMSSVRIQAVKLSLSSDKLCMT 298
             +FP+Y+ ++     +   V+    R+AV     R   +         L++    L + 
Sbjct: 241 GHDFPDYRRLVRLPAGRRAPVDVPAFREAVRTGPVRTGEVREQDGAPCDLTV----LEVA 296

Query: 299 VDNP--DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSS 356
            D      G   E          + +  N  +LLE +   +      D +V  +    + 
Sbjct: 297 ADGSVAPAGDGAE-------GRDL-VAVNRDFLLEALPAGAG-----DRLVLEIGDPTAP 343

Query: 357 VFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           + IR  D           + F +LMP+R+
Sbjct: 344 LAIRRPDD---------ADTFSILMPVRL 363



 Score = 47.2 bits (111), Expect = 0.004,   Method: Composition-based stats.
 Identities = 25/122 (20%), Positives = 41/122 (33%), Gaps = 8/122 (6%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++++  S +   L            +P+   +L    DG L + A+           A  
Sbjct: 130 RLSLSGSALAAALDAVRFAAGTDPGLPMLGGILFDVEDGALCLVATDRYRMAVAQAAAEG 189

Query: 62  DVCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              GS   +TV    L D +R L +G        +  G  V +  GD     Q     +F
Sbjct: 190 -PAGSRVRVTVPLP-LADAMRALLEGDDPVRLSVD--GDRVTLETGDRQTAGQCL-GHDF 244

Query: 119 PS 120
           P 
Sbjct: 245 PD 246


>gi|289432029|ref|YP_003461902.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT]
 gi|289432171|ref|YP_003462044.1| DNA polymerase III subunit beta [Dehalococcoides sp. GT]
 gi|288945749|gb|ADC73446.1| DNA polymerase III beta chain [Dehalococcoides sp. GT]
 gi|288945891|gb|ADC73588.1| DNA polymerase III beta chain [Dehalococcoides sp. GT]
          Length = 419

 Score =  117 bits (293), Expect = 3e-24,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 35/268 (13%)

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L +  L   + R     A E+ R  L  + F +   D KL  V+ DG+RLA
Sbjct: 107 SPSNTVKPNLGALELSEALSRVVPFTAKEDNRPVLQCVLFKVA--DGKLTMVSADGYRLA 164

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           + ++D          +++ R  +  ++  L      V+V   +S   L+  SL +   LI
Sbjct: 165 MVKLDFDG---DEGQVLINRDELRGVISALRRA-YRVRVGFEKSGESLDGMSLVLDTELI 220

Query: 243 -------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
                  DG FP Y+ +IP   +  +  +     +AV  + ++S  +   + L++ + KL
Sbjct: 221 RYKWRGADGNFPEYEKLIPADFNTFVSFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKL 280

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            M+  + D G+A   +          I  +  YL + +            V  +L  S S
Sbjct: 281 TMSSPD-DKGQA--EIPADTQGEG-KIRLDGSYLADALRACGG------MVELKLVDSKS 330

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +     D +             V+MPM
Sbjct: 331 PMLFTSPDYEL------------VVMPM 346



 Score = 41.4 bits (96), Expect = 0.24,   Method: Composition-based stats.
 Identities = 29/237 (12%), Positives = 73/237 (30%), Gaps = 19/237 (8%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           ++ E L        +++  PV   VL +  DG L + ++         +    D  G + 
Sbjct: 120 ELSEALSRVVPFTAKEDNRPVLQCVLFKVADGKLTMVSADGYRLAMVKLDFDGDE-GQVL 178

Query: 69  VSAHLLYDIVRKLQD------GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
           ++   L  ++  L+       G + S    + +   ++       +        E+    
Sbjct: 179 INRDELRGVISALRRAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLI 238

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
             ++       ++     V  +   ++  +           +   + KL   + D     
Sbjct: 239 PADFNTFVSFDTNEAIRAVS-SLKVLSDSKAYPI------DLTIGNGKLTMSSPD----D 287

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
             + +I A       I +    + + LR        +K+  S+S +        + V
Sbjct: 288 KGQAEIPADTQGEGKIRLDGSYLADALRACGGM-VELKLVDSKSPMLFTSPDYELVV 343


>gi|332829045|gb|EGK01709.1| hypothetical protein HMPREF9455_01857 [Dysgonomonas gadei ATCC
           BAA-286]
          Length = 212

 Score =  117 bits (293), Expect = 4e-24,   Method: Composition-based stats.
 Identities = 52/211 (24%), Positives = 94/211 (44%), Gaps = 7/211 (3%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS-V 61
           I++ +S++L  L    +II  KNT+ +  ++LL   DG ++  A+  +  I  +I     
Sbjct: 4   ISISKSELLNRLQSVSKIISPKNTLLIMDNILLNIQDGTVKFSATDTQGRINTSIDGILT 63

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
           D   S+ +   LL + ++ L +        +    T   I +    F L       FP  
Sbjct: 64  DNNISVCIEPKLLIEALKTLPEQPLAISIDDKFSTT---IKYKGGKFELVGISPEGFPKE 120

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           K+     S  + S VL N +E+T    +T+++R  +  ++  I EE +    VA+DGH+L
Sbjct: 121 KDITNAKSISIPSKVLLNGIEKTILCASTDDLRPIMTSVYLSIAEEQINF--VASDGHKL 178

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRIL 212
           A+ E+     + +  S  +P K      R  
Sbjct: 179 ALLEIR-DESMTEKISFALPLKNRNHSKRFH 208



 Score = 38.3 bits (88), Expect = 2.3,   Method: Composition-based stats.
 Identities = 11/84 (13%), Positives = 33/84 (39%), Gaps = 6/84 (7%)

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQ-----AVKLSLSSDKLCMTVDNPDMGKAIESMNV 313
             + ++ + L   +  VS + S +        + L++    +  +  +   G+   S++ 
Sbjct: 2   TTISISKSELLNRLQSVSKIISPKNTLLIMDNILLNIQDGTVKFSATDT-QGRINTSIDG 60

Query: 314 YYNECPMDICFNYKYLLEIIDNIS 337
              +  + +C   K L+E +  + 
Sbjct: 61  ILTDNNISVCIEPKLLIEALKTLP 84


>gi|325123494|gb|ADY83017.1| DNA polymerase III, beta chain [Acinetobacter calcoaceticus PHEA-2]
          Length = 138

 Score =  116 bits (290), Expect = 7e-24,   Method: Composition-based stats.
 Identities = 31/129 (24%), Positives = 56/129 (43%), Gaps = 5/129 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---I 57
           M++ + +  +L +L H    +ER++T+ +  +V +Q N   L I  S  E+E+  +    
Sbjct: 1   MRLKIAKESLLNVLSHVVGAVERRHTLNILSNVKIQTNAQALTITGSDLEVELVASTVLT 60

Query: 58  PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
             +    G  TV A  L +I + L   A I      +      +  G+S F L + P  +
Sbjct: 61  EGACIEAGETTVPARKLMEICKSLPTAALIDLQITEDQ--RCILKSGNSRFVLGTLPAED 118

Query: 118 FPSTKEEEY 126
           +P    E  
Sbjct: 119 YPLLTTENS 127


>gi|294660637|ref|NP_853508.2| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str.
           R(low)]
 gi|284812301|gb|AAP57076.2| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str.
           R(low)]
 gi|284931008|gb|ADC30947.1| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str.
           R(high)]
          Length = 391

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 57/385 (14%), Positives = 145/385 (37%), Gaps = 22/385 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK    +S  LE +  +       N   +  ++ ++ ++   +I +S  ++     I   
Sbjct: 1   MKFFTSKSSFLEAIKFSSNFSSDNNFEQLLKNLYIKIDNKECKIYSSNGQVSSIYKIEDD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V+  G + V+A  L  I++ +          +N    ++ I  G     L    +  +
Sbjct: 61  IDVEEEGEVIVNAKKLITIIQSIVSDNFTLAKLDN----QLIIRAGKMQTSLNLEEDVSY 116

Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNG-IFFHINEEDLKLCAVAT 176
           P  + ++  +S  ++ S +    +++   + + +  +  ++  I F    +D+ +    +
Sbjct: 117 PEIEIDDSNFSVIDVDSFLFAKSIKKVIHSTSFQTTKNSISSAINFQKEADDMNIWITGS 176

Query: 177 DGHRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232
           D  +L+     +      +    +  V   ++  +   L  KD   +K+S    ++ L  
Sbjct: 177 DAIKLSSCYYKVNDTEDALKAKFNFSVNALSLSYVAAFLKDKDQLLLKISKKSDKVVLTN 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNL---RQAVDRVSIMSSVRIQAVK- 287
               + +R+ +  FP ++ ++  +       V+   +     A+  V  +S         
Sbjct: 237 NKFVLYLRVENEPFPEFKKILNANKVVSSFVVDKDLISNNLHALTGVLSLSDQGKNNADA 296

Query: 288 -LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
              +  + L ++ ++ D+       ++  +     DI  N  YL E I    S ++   E
Sbjct: 297 NFEILKNTLRISTNSFDIASYNSEFDISEFQGEVKDINLNPFYLQEHIKMFESKDI---E 353

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNK 370
               L S+ S   ++  +K++   K
Sbjct: 354 FKLLLQSAISGCILKVCEKNNDQFK 378


>gi|284931765|gb|ADC31703.1| DNA polymerase III beta subunit DnaN [Mycoplasma gallisepticum str.
           F]
          Length = 391

 Score =  115 bits (289), Expect = 1e-23,   Method: Composition-based stats.
 Identities = 62/397 (15%), Positives = 149/397 (37%), Gaps = 25/397 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK    +S  LE +  +       N   +  ++ ++ ++   +I +S  ++     I   
Sbjct: 1   MKFFTSKSSFLEAIKFSSNFSSDNNFEQLLKNLYIKIDNKECKIYSSNGQVSSIYKIEDD 60

Query: 59  ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
             V+  G + V+A  L  I++ +          +N    ++ I  G     L    +  +
Sbjct: 61  IDVEEEGEVIVNAKKLITIIQSIVSDNFTLAKLDN----QLIIRAGKMQTSLNLEEDVSY 116

Query: 119 PSTKEEEYVYS-FELASSVLKNLVERTHFAMATEEIRYYLNG-IFFHINEEDLKLCAVAT 176
           P  + ++  +S  ++ S +    +++   + + +  +  ++  I F    +D+ +    +
Sbjct: 117 PEIEIDDSNFSVIDVDSFLFAKSIKKVIHSTSFQTTKNSISSAINFQKEADDMNIWITGS 176

Query: 177 DGHRLAVAEVDIVAQIAKM---PSIIVPRKAVGEILRILSSKDS-SVKVSLSESRIHLNI 232
           D  +L+     +      +    +  V   ++  +   L  KD   +K+S    ++ L  
Sbjct: 177 DAIKLSSCYYKVNDTEDALKAKFNFSVNALSLSYVAAFLKDKDQLLLKISKKSDKVVLTN 236

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNL---RQAVDRVSIMSSVRIQAVK- 287
               + +R+ +  FP ++ ++  +       V+   +     A+  V  +S         
Sbjct: 237 NKFVLYLRVENEPFPEFKKILNANKVVSSFVVDKDLISNNLHALTGVLSLSDQGKNNADA 296

Query: 288 -LSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDE 345
              +  + L ++ ++ D+       ++  +     DI  N  YL E I    S ++   E
Sbjct: 297 NFEILKNTLRISTNSFDIASYNSEFDISEFQGEVKDINLNPFYLQEHIKMFESKDI---E 353

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
               L S+ S   ++  +K   NN   K+    VL P
Sbjct: 354 FKLLLQSAISGCILKVCEK---NNDQFKLKFIQVLAP 387


>gi|289807127|ref|ZP_06537756.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. AG3]
          Length = 102

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 36/116 (31%), Positives = 62/116 (53%), Gaps = 14/116 (12%)

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
           QA  R +I+S+ + + V+L +S ++L +T +NP+  +A E ++V Y    M+I FN  Y+
Sbjct: 1   QAFARAAILSNEKFRGVRLYVSENQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYV 60

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L++++ +       + V   L  S SSV I               +A YV+MPMR+
Sbjct: 61  LDVLNALKC-----ETVRIMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 102


>gi|13357635|ref|NP_077909.1| DNA pol III beta chain [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|167971016|ref|ZP_02553293.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
 gi|168282152|ref|ZP_02689819.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|168308310|ref|ZP_02690985.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|170761919|ref|YP_001752158.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|11356839|pir||C82937 DNA pol III beta chain UU079 [imported] - Ureaplasma urealyticum
 gi|6899030|gb|AAF30484.1|AE002107_8 DNA pol III beta chain [Ureaplasma parvum serovar 3 str. ATCC
           700970]
 gi|168827496|gb|ACA32758.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 3 str.
           ATCC 27815]
 gi|171902942|gb|EDT49231.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 1 str.
           ATCC 27813]
 gi|182676125|gb|EDT88030.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 14 str.
           ATCC 33697]
 gi|186700969|gb|EDU19251.1| DNA polymerase III, beta subunit [Ureaplasma parvum serovar 6 str.
           ATCC 27818]
          Length = 379

 Score =  114 bits (287), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 53/352 (15%), Positives = 139/352 (39%), Gaps = 13/352 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M++ +    ++E +  +  I    N   +   VL++ +   +  K +  ++     I   
Sbjct: 1   MEVFISIKKLIEAIKFSTTIANTNNANALLLGVLIEVSQNKISFKTTNNQVSGYKEITEG 60

Query: 61  VD--VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
            +    G + V+A ++  ++ KL+D + +    +      + I   +    + +     F
Sbjct: 61  FEYFNSGKVLVTAKIILGLISKLKDKSVLLKQID---TNILLIKTENFETQINTMNIEGF 117

Query: 119 PSTK-EEEYVYSFELASSVLKNLVERTHFAMATE---EIRYYLNGIFFHINEEDLKLCAV 174
           P+     E      L   +++ +  +    +      E    ++GI       + KL A+
Sbjct: 118 PNLNFSLEDYVKISLPHQIMQEINTKVLPNVLNSQGIEKIQPISGILIDTQTLENKLIAI 177

Query: 175 ATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIE 233
            TD  + +    + + +  K        K + EIL+ +  S + +V   +    +   I 
Sbjct: 178 GTDKIKASCLIREYMGEKFKFIVSYSTMKLIIEILKNVEYSNNQTVDFYVRSRSLIFKIN 237

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDR-VSIMSSVRIQAVKLSLS 291
              +  R+IDG +PN  ++   +N +     +   L + ++R ++I+   +   + + + 
Sbjct: 238 DAILQTRMIDGVYPNIYSIFDETNEENTYVFDRRLLIEIIERGMNIVMQEQNPKISIRID 297

Query: 292 SDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVV 342
            ++  +++   ++G   E M++   N    +   N   L  ++ N  +++V 
Sbjct: 298 KNEAEISLTTFEIGNMKEKMSIVNLNNKSAEFILNPSLLAHVLKNFDNNDVT 349


>gi|297201230|ref|ZP_06918627.1| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
 gi|297147836|gb|EDY56941.2| DNA polymerase III, beta subunit [Streptomyces sviceus ATCC 29083]
          Length = 388

 Score =  114 bits (286), Expect = 2e-23,   Method: Composition-based stats.
 Identities = 57/263 (21%), Positives = 101/263 (38%), Gaps = 35/263 (13%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                +A+  L   ++   FA +T+     L G+ F I  E   L  VATD +RLAVA  
Sbjct: 155 TVRLTVAAPELGAALDTVRFAASTDPELPMLGGVLFDIEGES--LHVVATDRYRLAVARA 212

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
            +         +IVP   + + +R L   +  V+  L   R+ L      ++ + +D +F
Sbjct: 213 GVTGHEGSRVQVIVPT-PLADAMRALLHGEGPVRFLLDGDRVALEAGDGQVAGQCLDHDF 271

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL----SSDKLCMTVDNP 302
           P+Y+ ++P + D+   V   + R+ ++    + S       LSL        + +  D  
Sbjct: 272 PDYRRLLPQAGDRRALVEVADFRRTLE-TGPVRSDETGTHDLSLLRVEDDGTVTVCAD-- 328

Query: 303 DMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
             G A           P  +  N           +      D +V  L +  + + IR  
Sbjct: 329 --GDA---------GDPGRVAVN-----RAFLLDALAAAGRDRLVLELAAPTAPIAIRRP 372

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
           D +           F +LMP+R+
Sbjct: 373 DDEGG---------FSILMPVRL 386



 Score = 39.8 bits (92), Expect = 0.65,   Method: Composition-based stats.
 Identities = 28/158 (17%), Positives = 46/158 (29%), Gaps = 15/158 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++TV   ++   L            +P+   VL       L + A+            + 
Sbjct: 157 RLTVAAPELGAALDTVRFAASTDPELPMLGGVLFDIEGESLHVVATDRYRLAVARAGVTG 216

Query: 62  DVCGS---ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEF 118
              GS   + V    L D +R L  G     F  +  G  V +  GD     Q   + +F
Sbjct: 217 HE-GSRVQVIVPTP-LADAMRALLHGEGPVRFLLD--GDRVALEAGDGQVAGQCL-DHDF 271

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYY 156
           P        Y   L  +  +  +        T E    
Sbjct: 272 P-------DYRRLLPQAGDRRALVEVADFRRTLETGPV 302


>gi|6226601|sp|P47247|DPO3B_MYCGE RecName: Full=DNA polymerase III subunit beta
          Length = 364

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 57/367 (15%), Positives = 147/367 (40%), Gaps = 30/367 (8%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD--VCGSITVSAHLLYDI 77
           II      P   + L++A +  +   A+     +   +  ++D    GS+ V   +  D+
Sbjct: 5   IISNNKIKPHHSYFLIEAKEKEINFYANNEYFSVKCNLNKNIDILEQGSLIVKGKIFNDL 64

Query: 78  VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST-----KEEEYVYSFEL 132
           +  +++       K+      + +    ++  L +   +EFP        +      F++
Sbjct: 65  INGIKEEIITIQEKDQT----LLVKTKKTSINLNTINVNEFPRIRFNEKNDLSEFNQFKI 120

Query: 133 ASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQ 191
             S+L   +++   +++   EI    NG+ F+      ++   A+D ++L+V E+    Q
Sbjct: 121 NYSLLVKGIKKIFHSVSNNREISSKFNGVNFN-GSNGKEIFLEASDTYKLSVFEIK---Q 176

Query: 192 IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-------IHLNIESLSMSVRLIDG 244
             +    I+    +  I      +D S+     +         + +++++  +S   ++ 
Sbjct: 177 ETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEMLISMDNFMISYTSVNE 236

Query: 245 EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPD 303
           +FP          + ++ V    L+ A+ R+  ++ + R     + ++S +L +     +
Sbjct: 237 KFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDMQINSSELKIRAIVNN 296

Query: 304 MGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
           +G ++E ++   +    ++I FN   LL+ I++  S+     E+ F    ++    I  K
Sbjct: 297 IGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESN-----EINFDFQGNSKYFLITSK 351

Query: 363 DKDSKNN 369
            +     
Sbjct: 352 SEPELKQ 358


>gi|21219691|ref|NP_625470.1| DNA polymerase III subunit beta [Streptomyces coelicolor A3(2)]
 gi|6468432|emb|CAB61592.1| putative DNA polymerase III beta chain [Streptomyces coelicolor
           A3(2)]
          Length = 386

 Score =  114 bits (285), Expect = 3e-23,   Method: Composition-based stats.
 Identities = 53/251 (21%), Positives = 100/251 (39%), Gaps = 34/251 (13%)

Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203
             FA   +     L G+ F +  + L L  VATD +R+AVA +  V        +IVP  
Sbjct: 159 VRFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPA- 215

Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            + + +R L   D   + ++   R+ L       S R +  +FP+Y+ ++     + + V
Sbjct: 216 PLVDAMRALLGDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVTV 275

Query: 264 NCTNLRQAVD----RVSIMSSVRIQA----VKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
           +    R+A++    RV+       QA    V  ++    + +  +     +A        
Sbjct: 276 DVPEFREALESGPVRVAEDREPGRQARDVSVLSTVDDGTVIVCGEGAPDEEA-------- 327

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKV 374
           +     +  +  YLL+ +          D +V     ++ + + IR  D +         
Sbjct: 328 DGAAHHVGVDRGYLLDALAAAD-----RDRLVLEFGPAATAPLAIRRMDDE--------- 373

Query: 375 NAFYVLMPMRI 385
            AF VLMP+R+
Sbjct: 374 GAFSVLMPVRL 384



 Score = 37.1 bits (85), Expect = 5.3,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 40/136 (29%), Gaps = 7/136 (5%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS---ITVSAHLLYD 76
              R   +P+   VL       L + A+         + A V   G+   + V A  L D
Sbjct: 162 AAGRDPELPMLGGVLFDVEGDTLHLVATDRYRMAVARLAA-VGHGGAREQVIVPAP-LVD 219

Query: 77  IVRKLQ-DGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASS 135
            +R L  D     F  E +  T        S   L      ++    +        +   
Sbjct: 220 AMRALLGDDGPARFAVEGDRVTLEAAERQASGRRLAHDFP-DYRRLVQLPPGRRVTVDVP 278

Query: 136 VLKNLVERTHFAMATE 151
             +  +E     +A +
Sbjct: 279 EFREALESGPVRVAED 294


>gi|256789227|ref|ZP_05527658.1| DNA polymerase III beta chain [Streptomyces lividans TK24]
 gi|289773118|ref|ZP_06532496.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
 gi|289703317|gb|EFD70746.1| DNA polymerase III, beta subunit [Streptomyces lividans TK24]
          Length = 372

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 54/251 (21%), Positives = 100/251 (39%), Gaps = 34/251 (13%)

Query: 144 THFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203
             FA   +     L G+ F +  + L L  VATD +R+AVA +  V        +IVP  
Sbjct: 145 VRFAAGRDPELPMLGGVLFDVEGDTLHL--VATDRYRMAVARLAAVGHGGAREQVIVPA- 201

Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            + + +R L   D   + ++   R+ L       S R +  +FP+Y+ ++     + + V
Sbjct: 202 PLVDAMRALLDDDGPARFAVEGDRVTLEAAERQASGRRLAHDFPDYRRLVQLPPGRRVAV 261

Query: 264 NCTNLRQAVD----RVSIMSSVRIQA----VKLSLSSDKLCMTVDNPDMGKAIESMNVYY 315
           +    R+A++    RV+       QA    V  ++    + +  D     +A        
Sbjct: 262 DVPEFREALESGPVRVAEDREPGRQARDVSVLSTVDDGTVIVCGDGAPDEEA-------- 313

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD-SSNSSVFIRGKDKDSKNNKDNKV 374
           +     +  +  YLL+ +          D +V     ++ + + IR  D +         
Sbjct: 314 DGAAHHVGVDRGYLLDALAAAD-----RDRLVLEFGPAATAPLAIRRMDDE--------- 359

Query: 375 NAFYVLMPMRI 385
            AF VLMP+R+
Sbjct: 360 GAFSVLMPVRL 370



 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 16/69 (23%), Positives = 24/69 (34%), Gaps = 5/69 (7%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGS---ITVSAHLLYD 76
              R   +P+   VL       L + A+         + A V   G+   + V A  L D
Sbjct: 148 AAGRDPELPMLGGVLFDVEGDTLHLVATDRYRMAVARLAA-VGHGGAREQVIVPAP-LVD 205

Query: 77  IVRKLQDGA 85
            +R L D  
Sbjct: 206 AMRALLDDD 214


>gi|147668838|ref|YP_001213656.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp.
           BAV1]
 gi|146269786|gb|ABQ16778.1| DNA polymerase III beta subunit family protein [Dehalococcoides sp.
           BAV1]
          Length = 419

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 102/268 (38%), Gaps = 35/268 (13%)

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L +  L   + R     A E+ R  L  + F +   D KL  V+ DG+RLA
Sbjct: 107 SPSNAVKPNLGALELSEALSRVVPFTAKEDNRPVLQSVLFKVA--DGKLTMVSADGYRLA 164

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           + ++D          +++ R  +  ++  L      V+V   +S   L+  SL +   LI
Sbjct: 165 MVKLDFDG---DEGQVLINRDELRGVISALRRA-YRVRVGFEKSGESLDGMSLVLDTELI 220

Query: 243 -------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
                  DG FP Y+ +IP + +  +  +     +AV  + ++S  +   + L++ + KL
Sbjct: 221 RYKWRGADGNFPEYEKLIPANFNTFVSFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKL 280

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            M+  + D G A   +          I  +  YL + +            V  +L  S S
Sbjct: 281 TMSSPD-DKGMA--EIPADTQGDG-KIRLDGSYLADALRACGG------MVELKLVDSKS 330

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +     D +             V+MPM
Sbjct: 331 PMLFTSPDYEL------------VVMPM 346



 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 30/237 (12%), Positives = 73/237 (30%), Gaps = 19/237 (8%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           ++ E L        +++  PV   VL +  DG L + ++         +    D  G + 
Sbjct: 120 ELSEALSRVVPFTAKEDNRPVLQSVLFKVADGKLTMVSADGYRLAMVKLDFDGDE-GQVL 178

Query: 69  VSAHLLYDIVRKLQD------GAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTK 122
           ++   L  ++  L+       G + S    + +   ++       +        E+    
Sbjct: 179 INRDELRGVISALRRAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRGADGNFPEYEKLI 238

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
              +       ++     V  +   ++  +           +   + KL   + D   +A
Sbjct: 239 PANFNTFVSFDTNEAIRAVS-SLKVLSDSKAYPI------DLTIGNGKLTMSSPDDKGMA 291

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
               +I A       I +    + + LR        +K+  S+S +        + V
Sbjct: 292 ----EIPADTQGDGKIRLDGSYLADALRACGGM-VELKLVDSKSPMLFTSPDYELVV 343


>gi|300088280|ref|YP_003758802.1| DNA polymerase III subunit beta [Dehalogenimonas
           lykanthroporepellens BL-DC-9]
 gi|299528013|gb|ADJ26481.1| DNA polymerase III beta chain [Dehalogenimonas lykanthroporepellens
           BL-DC-9]
          Length = 419

 Score =  113 bits (283), Expect = 5e-23,   Method: Composition-based stats.
 Identities = 57/268 (21%), Positives = 101/268 (37%), Gaps = 35/268 (13%)

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
                    L +  L   + R     A E+ R  L  + F +   D KL  V+ DG+RLA
Sbjct: 107 SPSNSVKPNLGALELSEALSRVVPFTAKEDNRPVLQCVLFKVA--DGKLTMVSADGYRLA 164

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           + ++D          +++ R  +  ++  L      V+V   +S   L+  SL +   LI
Sbjct: 165 MVKLDFDG---DEGQVLINRDELRGVISALRRA-YRVRVGFEKSGESLDGMSLVLDTELI 220

Query: 243 -------DGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
                  DG FP Y+ +IP   +  +  +     +AV  + ++S  +   + L++ + KL
Sbjct: 221 RYKWRGADGNFPEYEKLIPAYFNTFVSFDTNEAIRAVSSLKVLSDSKAYPIDLTIGNGKL 280

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNS 355
            M+  + D G A   +          I  +  YL + +            V  +L  S S
Sbjct: 281 TMSSPD-DKGMA--EIPADTQGEG-RIRLDGSYLADALRACGG------MVELKLVDSKS 330

Query: 356 SVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
            +     D +             V+MPM
Sbjct: 331 PMLFTSPDYEL------------VVMPM 346



 Score = 39.8 bits (92), Expect = 0.66,   Method: Composition-based stats.
 Identities = 32/237 (13%), Positives = 75/237 (31%), Gaps = 19/237 (8%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSIT 68
           ++ E L        +++  PV   VL +  DG L + ++         +    D  G + 
Sbjct: 120 ELSEALSRVVPFTAKEDNRPVLQCVLFKVADGKLTMVSADGYRLAMVKLDFDGDE-GQVL 178

Query: 69  VSAHLLYDIVRKLQDGAQI----SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEE 124
           ++   L  ++  L+   ++        E+  G  + +      +  +   +  FP  ++ 
Sbjct: 179 INRDELRGVISALRRAYRVRVGFEKSGESLDGMSLVLDTELIRYKWRG-ADGNFPEYEKL 237

Query: 125 EYVYSFELASSVLKNLVERTH--FAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
              Y     S      +        ++  +           +   + KL   + D   +A
Sbjct: 238 IPAYFNTFVSFDTNEAIRAVSSLKVLSDSKAYPI------DLTIGNGKLTMSSPDDKGMA 291

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
               +I A       I +    + + LR        +K+  S+S +        + V
Sbjct: 292 ----EIPADTQGEGRIRLDGSYLADALRACGGM-VELKLVDSKSPMLFTSPDYELVV 343


>gi|20799549|gb|AAM28542.1|AF494512_1 DNA polymerase III beta subunit [Tomato big bud phytoplasma]
          Length = 273

 Score =  113 bits (282), Expect = 6e-23,   Method: Composition-based stats.
 Identities = 56/279 (20%), Positives = 130/279 (46%), Gaps = 16/279 (5%)

Query: 39  DGLLEIKASGPEIEITGAI---PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENEL 95
           D +  ++A      I   I          GS+ +    L DI++K+   +      E+ L
Sbjct: 1   DNVCYLEAMDYNKNIQLQIKDTDLVAKQNGSLVIIGKHLXDIIKKIDSCSLEMTLVEDYL 60

Query: 96  GTEVNISHGDSNFYLQSFPESEFPSTK-EEEYVYSFELASSVLKNLVERTHFAMATEEIR 154
              + I+  +S + L+      FP    + +    F + + +LK +++  + A + ++ +
Sbjct: 61  ---LFINSKNSEYKLKVIDLQLFPPVSFDFQSDKFFAIKNEILKKIIKEVNVAASRDKQQ 117

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS- 213
             L G+ F I E  L L  +ATD  R+A  E+ +        +I V  K + E+ ++L  
Sbjct: 118 KTLMGVNF-IYENSL-LRVLATDTFRIAQKEISLDXNYFD-FNITVSYKNLEELYKLLEY 174

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD 273
            KD  V +S+++ ++ L  ++L     L++G++P +  +   S    +++N  +  + ++
Sbjct: 175 QKDELVHISINQQKMILRCDNLLFQTTLLEGKYPAWPIIKVSSFPFFVKMNRLDCLKTLE 234

Query: 274 RVSIM----SSVRIQAVKLSLS-SDKLCMTVDNPDMGKA 307
           RVS++     ++    + L +   + + ++ ++ ++G+A
Sbjct: 235 RVSLVLTKEENIFSNIISLYIRLDNIIEISANSDEIGQA 273


>gi|330723617|gb|AEC45987.1| DNA polymerase III subunit beta [Mycoplasma hyorhinis MCLD]
          Length = 374

 Score =  113 bits (282), Expect = 7e-23,   Method: Composition-based stats.
 Identities = 66/375 (17%), Positives = 152/375 (40%), Gaps = 28/375 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +E+  + + +      I   N       +LL+     L I ++  E+ I   IP  
Sbjct: 1   MKFIIEKEKLEKYVERNLIAISNSNGYSALGGLLLELRRDGLVITSTDRELSIQSFIPNF 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  G + V+A++  +           +     ++   V +  G   F ++     
Sbjct: 61  EFIEINSLGRLLVNANMFKN-----ILKKLKNKISLEQVDNTVILRSGLDQFSIKLNDVD 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAM-----ATEEIRYYLNGIFFHINEEDLKL 171
           EFP    +       + +S L+  ++ T FA       T+E   YL     ++   D  L
Sbjct: 116 EFPELDFKNRGEKLIINASKLREAIKNTIFACYTSKENTKEKNNYLLFTCLNLKTRDNYL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
              A+D  R+A+  ++I   I     I +  K + +   +L      +K+ + + +I   
Sbjct: 176 EISASDRIRIAMETINIENPIE--LDIAIKNKNLKDF--VLEEAKEDIKLFIDDWKISYT 231

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIM-SSVRIQAVKL 288
            E+ ++   L    + + ++V P  +D +   ++    L +   + +I+ SS +   +  
Sbjct: 232 FENTTVQSVLFKETYKDIRSVFPKKDDIQYYFQIEKKELIEITSKATIISSSEKHNTLIF 291

Query: 289 SLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +++ D+L +  +  + G   I++ N  ++   +    NYK+L + I+         D++ 
Sbjct: 292 NITEDELSVQFNEDEKGNSIIKTKNHVFSGPTLTFKVNYKFLKDAINVFE------DKIN 345

Query: 348 FRLDSSNSSVFIRGK 362
           F + ++ + + I  +
Sbjct: 346 FFITANKTKLLINSQ 360


>gi|289610241|emb|CBI60296.1| unnamed protein product [Sordaria macrospora]
          Length = 125

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 51/128 (39%), Positives = 75/128 (58%), Gaps = 3/128 (2%)

Query: 45  KASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG 104
            A+  +++I   I A++D  G+ITVSAH L+DI RKL +GAQ+           + +  G
Sbjct: 1   MATDLDLQIDETIAAAIDQAGAITVSAHTLFDIARKLPEGAQVQLSAAE---GRLTVVAG 57

Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHI 164
            + F L + P  +FP   E E    FEL ++ LK ++++T FA++TEE RYYLNGIF H+
Sbjct: 58  RARFSLATLPRDDFPVIAEGELPTQFELPATTLKAIIDKTRFAISTEETRYYLNGIFLHV 117

Query: 165 NEEDLKLC 172
            E     C
Sbjct: 118 AEMTASRC 125


>gi|304372807|ref|YP_003856016.1| DNA polymerase III beta subunit [Mycoplasma hyorhinis HUB-1]
 gi|304308998|gb|ADM21478.1| DNA polymerase III beta subunit [Mycoplasma hyorhinis HUB-1]
          Length = 374

 Score =  112 bits (281), Expect = 8e-23,   Method: Composition-based stats.
 Identities = 65/375 (17%), Positives = 151/375 (40%), Gaps = 28/375 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-- 58
           MK  +E+  + + +      I   N       +LL+     L I ++  E+ I   IP  
Sbjct: 1   MKFIIEKEKLEKYVERNLIAISNSNGYSALGGLLLELRRDGLVITSTDRELSIQSFIPNF 60

Query: 59  --ASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES 116
               ++  G + V+A++  +           +     ++   V +  G   F ++     
Sbjct: 61  EFIEINSLGRLLVNANMFKN-----ILKKLKNKISLEQVDNTVILRSGLDQFSIKLNDVD 115

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAM-----ATEEIRYYLNGIFFHINEEDLKL 171
           EFP    +       + +S L+  ++ T FA       T+E   YL      +   D  L
Sbjct: 116 EFPELDFKNRGEKLIINASKLREAIKNTIFACYTSKENTKEKNNYLLFTCLSLKTRDNYL 175

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN 231
              A+D  R+A+  ++I   I     I +  K + +   +L      +++ + + +I   
Sbjct: 176 EISASDRIRIAMETINIENPIE--LDIAIKNKNLKDF--VLEEAKEDIELFIDDWKISYT 231

Query: 232 IESLSMSVRLIDGEFPNYQNVIPCSNDKE--LRVNCTNLRQAVDRVSIM-SSVRIQAVKL 288
            E+ ++   L    + + ++V P  +D +   ++    L +   + +I+ SS +   +  
Sbjct: 232 FENTTVQSVLFKETYKDIRSVFPKKDDIQYYFQIEKKELIEITSKATIISSSEKHNTLIF 291

Query: 289 SLSSDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +++ D+L +  +  + G   I++ N  ++   +    NYK+L + I+         D++ 
Sbjct: 292 NITEDELSVQFNEDEKGNSIIKTKNHVFSGPTLTFKVNYKFLKDAINVFE------DKIN 345

Query: 348 FRLDSSNSSVFIRGK 362
           F + ++ + + I  +
Sbjct: 346 FFITANKTKLLINSQ 360


>gi|195941090|ref|ZP_03086472.1| DNA polymerase III subunit beta [Escherichia coli O157:H7 str.
           EC4024]
          Length = 102

 Score =  112 bits (281), Expect = 9e-23,   Method: Composition-based stats.
 Identities = 35/116 (30%), Positives = 62/116 (53%), Gaps = 14/116 (12%)

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYL 329
           QA  R +I+S+ + + V+L +S +++ +T +NP+  +A E ++V Y    M+I FN  Y+
Sbjct: 1   QAFARAAILSNEKFRGVRLYVSENQIKITANNPEQEEAEEILDVTYAGAEMEIGFNVSYV 60

Query: 330 LEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L++++ +       + V   L  S SSV I               +A YV+MPMR+
Sbjct: 61  LDVLNALKC-----ENVRILLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 102


>gi|121582887|ref|YP_973329.1| DNA polymerase III, beta subunit [Polaromonas naphthalenivorans
           CJ2]
 gi|120596149|gb|ABM39587.1| DNA polymerase III beta subunit family protein [Polaromonas
           naphthalenivorans CJ2]
          Length = 366

 Score =  112 bits (280), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 74/397 (18%), Positives = 164/397 (41%), Gaps = 48/397 (12%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I+     +   L +  + I   +T  ++     +  +G L I A            A 
Sbjct: 1   MNISTTIGALKHALQNVLKAI---HTKQITA----EFCNGQLHIHAC----ANGAHAKAL 49

Query: 61  VDVCGS-----ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           V   G+       ++A L+ +I+       + S  ++ E    + +S G +   L  + E
Sbjct: 50  VPSTGTLPNLVFQLTAKLVLNIINNCATETKCSISQDKED---LRLSFGGARIKLTRYTE 106

Query: 116 SEFPSTK----EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
            E    K    +E         S  L+  +       + ++ RY L G++F   +   +L
Sbjct: 107 KEVDFFKWNSKDEHNEAIGHFESQNLRKAIMSVSRFYSDDDQRYQLRGVYFQSIQG--RL 164

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR---- 227
              AT+G RLA    ++V  +     +I+  + V  ++ I+ + +  V++S+        
Sbjct: 165 VLAATNGTRLAEKITNLV--VRDFRPMIIGGEYVEALVSIIKNDEEDVEISIRGGNDATA 222

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
           +  +  + S+   LI G +P+Y+++IP S D  ++VN   L  A+DR+  +S      V 
Sbjct: 223 VIFSTRNFSIKCPLIGGAYPSYRSIIPAS-DHHVQVNAAALIAALDRMEAVS---GNFVH 278

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           L+ S++ + +   + D   + E +    ++  + +    K L   +  +++++V+   + 
Sbjct: 279 LNFSNEIVTVETPDND---SSEQIQAEGDDFTLSLAIQPKLLAISLAAVTTEKVL---IA 332

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             L + N+S         +  N + +     ++ P++
Sbjct: 333 VCLANGNTSFL-------TIKNTEIQDGWLALVSPIK 362


>gi|330948082|gb|EGH48342.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 109

 Score =  111 bits (279), Expect = 1e-22,   Method: Composition-based stats.
 Identities = 33/109 (30%), Positives = 63/109 (57%)

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           HRLA+  +    + A    +IVPRK + E+ R+L+ +D +V + L +  I       + +
Sbjct: 1   HRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTVSIVLGQHHIRATTGEFTFT 60

Query: 239 VRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK 287
            +L+DG+FP+Y+ V+P   DK +  +   LR+A  R +I+S+ + + ++
Sbjct: 61  SKLVDGKFPDYERVLPKGGDKLVLGDRQALREAFSRTAILSNEKYRGIR 109


>gi|270307680|ref|YP_003329738.1| DNA polymerase III domain protein [Dehalococcoides sp. VS]
 gi|270153572|gb|ACZ61410.1| DNA polymerase III domain protein [Dehalococcoides sp. VS]
          Length = 413

 Score =  111 bits (277), Expect = 3e-22,   Method: Composition-based stats.
 Identities = 49/252 (19%), Positives = 96/252 (38%), Gaps = 35/252 (13%)

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
             + R       E+ +  L  + F +   D KL  V+ DG RL++ ++D      +   +
Sbjct: 123 EALSRVLPFTTKEDSKPILQCVLFRVK--DGKLTMVSADGFRLSLVKLDFDGDEGE---V 177

Query: 199 IVPRK-------AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQN 251
           ++ R        A+    R+  S + S + SL    + L+ E++    R  DG FP Y+ 
Sbjct: 178 LISRDDLWGVVSALRRAYRVRVSFEKSGE-SLDGMSLVLDTEAIRYKWRGADGNFPEYEK 236

Query: 252 VIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311
           +IP      +  +     +AV  + ++S  +   + L++ + KL M+  +    K    +
Sbjct: 237 LIPADFTTFVSFDTNEAIKAVSSLKVLSDSKNYPIDLTIGNGKLTMSSPD---EKGQTEI 293

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
                     I  +  +L + +            V  +L +S S +     D +      
Sbjct: 294 PADTQGEG-RIRLDGSFLADALRACGG------MVELKLVNSQSPMLFTSPDYEL----- 341

Query: 372 NKVNAFYVLMPM 383
                  V+MPM
Sbjct: 342 -------VVMPM 346



 Score = 44.5 bits (104), Expect = 0.025,   Method: Composition-based stats.
 Identities = 29/238 (12%), Positives = 77/238 (32%), Gaps = 21/238 (8%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPASVDVCGSI 67
           ++ E L        ++++ P+   VL +  DG L + ++    + +   +    D  G +
Sbjct: 120 ELSEALSRVLPFTTKEDSKPILQCVLFRVKDGKLTMVSADGFRLSLV-KLDFDGDE-GEV 177

Query: 68  TVSAHLLYDIVRKLQDGAQISFFKE------NELGTEVNISHGDSNFYLQSFPESEFPST 121
            +S   L+ +V  L+   ++    E      + +   ++       +        E+   
Sbjct: 178 LISRDDLWGVVSALRRAYRVRVSFEKSGESLDGMSLVLDTEAIRYKWRGADGNFPEYEKL 237

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
              ++       ++     V  +   ++  +           +   + KL   + D    
Sbjct: 238 IPADFTTFVSFDTNEAIKAVS-SLKVLSDSKNYPI------DLTIGNGKLTMSSPD---- 286

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
              + +I A       I +    + + LR        +K+  S+S +        + V
Sbjct: 287 EKGQTEIPADTQGEGRIRLDGSFLADALRACGGM-VELKLVNSQSPMLFTSPDYELVV 343


>gi|294632544|ref|ZP_06711104.1| DNA polymerase subunit III beta [Streptomyces sp. e14]
 gi|292835877|gb|EFF94226.1| DNA polymerase subunit III beta [Streptomyces sp. e14]
          Length = 281

 Score =  110 bits (275), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 48/276 (17%), Positives = 105/276 (38%), Gaps = 33/276 (11%)

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
            E+  P+           L +  L   ++   FA  T+     L G+   I ++ L++  
Sbjct: 33  RENPMPALPATP--VHLALPAPELAAALDAVRFAAGTDPELPMLGGVLLDIEDDALRV-- 88

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATD +R+A+A             +I P   + + +R L   + + ++++    + L   
Sbjct: 89  VATDRYRMAIARTRTTTHDGPHTQVIAP-LPLTDAIRALLDGEETAQLAVEGDLLTLGTG 147

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLS 291
               + R +D +FP+ + ++     +  R++    R A++   + +S   +       LS
Sbjct: 148 DRRTTGRCLDHDFPDCRRLLDLPTGRRARIDTAVFRTALETGPVHASEPPQQDGAPRDLS 207

Query: 292 SDKLCMTVDNPDMGKAIESMNVYYNECPMD--ICFNYKYLLEIIDNISSDEVVDDEVVFR 349
              L +T D         ++ V  +       + F+  YLL  +            +   
Sbjct: 208 --VLRVTADG--------TVTVCGDGDDTSDAVAFDRDYLLHALTA-----AARPTLTLE 252

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             +  + + +R  D +         + F +LMP+R+
Sbjct: 253 FGTPATPLAVRRPDDE---------DTFSILMPVRL 279



 Score = 40.2 bits (93), Expect = 0.54,   Method: Composition-based stats.
 Identities = 22/127 (17%), Positives = 45/127 (35%), Gaps = 7/127 (5%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPASVDVCGSITVSAHLLYDIV 78
                  +P+   VLL   D  L + A+    + I      + D   +  ++   L D +
Sbjct: 64  AAGTDPELPMLGGVLLDIEDDALRVVATDRYRMAIARTRTTTHDGPHTQVIAPLPLTDAI 123

Query: 79  RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS---TKEEEYVYSFELASS 135
           R L DG + +       G  + +  GD     +   + +FP      +        + ++
Sbjct: 124 RALLDGEETAQLAVE--GDLLTLGTGDRRTTGRCL-DHDFPDCRRLLDLPTGRRARIDTA 180

Query: 136 VLKNLVE 142
           V +  +E
Sbjct: 181 VFRTALE 187


>gi|312600975|gb|ADQ90230.1| DNA polymerase III beta subunit [Mycoplasma hyopneumoniae 168]
          Length = 362

 Score =  109 bits (274), Expect = 5e-22,   Method: Composition-based stats.
 Identities = 67/340 (19%), Positives = 132/340 (38%), Gaps = 32/340 (9%)

Query: 18  CRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP----ASVDVCGSITVSAHL 73
              I      P      L+     L I ++  EI     I       +   GS  +    
Sbjct: 2   QSAILNNINSP-LSSFFLKLTRSGLFIISTNSEISYKVFINKKDLIEIYDVGSCLIDGVF 60

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           L D++RK     Q+SF     +G+E+ +   D+ F   +   S FP    E+      + 
Sbjct: 61  LRDVIRK--SDKQLSFHL---IGSELKVFWEDALFSKTTRDSSFFPEINFEQKGIKLTVN 115

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           +   K  ++ T FA      +  L+ I      E   L   ATD  R A  +++I  +  
Sbjct: 116 AKNFKRAIKNTAFATTNNPSQPILSAINL--RSEAGFLHFSATDTSRFASEKIEISNKS- 172

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
              +I V  K + +   I    D  +++++  S+I    ++L++  R+   E+ +  N++
Sbjct: 173 -RINISVSAKNLKDF--IPPELDKDIELNIESSKISYIYDNLTIQSRIFTIEYKDISNIL 229

Query: 254 PCSNDK--ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM 311
           P  ++    L +N  ++   +D+ +I++  +   + LSLS + L   +   D G++    
Sbjct: 230 PKDSEILYSLTINKRDILDLIDKTTIITPGKDNVINLSLSKNALKGYISQYDSGQSNVQT 289

Query: 312 --------------NVYYNECPMDICFNYKYLLEIIDNIS 337
                         +  ++     +  NY+YL + I    
Sbjct: 290 KNVLDFRFNPRFASDFRFDPELAQVNINYRYLKDAISVFD 329



 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 27/157 (17%), Positives = 59/157 (37%), Gaps = 2/157 (1%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           K+TV   +    + +         + P+   + L++  G L   A+      +  I  S 
Sbjct: 111 KLTVNAKNFKRAIKNTAFATTNNPSQPILSAINLRSEAGFLHFSATDTSRFASEKIEISN 170

Query: 62  DVCGSITVSAHLLYDIV-RKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               +I+VSA  L D +  +L    +++           N++     F ++    S    
Sbjct: 171 KSRINISVSAKNLKDFIPPELDKDIELNIESSKISYIYDNLTIQSRIFTIEYKDISNILP 230

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYL 157
            K+ E +YS  +    + +L+++T      ++    L
Sbjct: 231 -KDSEILYSLTINKRDILDLIDKTTIITPGKDNVINL 266


>gi|91202142|emb|CAJ75202.1| similar to DNA polymerase III, beta subunit DnaN [Candidatus
           Kuenenia stuttgartiensis]
          Length = 445

 Score =  109 bits (273), Expect = 8e-22,   Method: Composition-based stats.
 Identities = 67/406 (16%), Positives = 136/406 (33%), Gaps = 65/406 (16%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS----VDV 63
           + +  ++  A + +++K T      +LL  +   L ++++   +  +G I AS       
Sbjct: 69  NALKNIVDIAGKFVDKKYT----GDLLLTIDGDKLRVESTDLTVHFSGYIEASDKYHFSH 124

Query: 64  CG---SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            G   S+ VS   L    + L     I   +  +      I  G   F+L+      FP 
Sbjct: 125 DGDINSVCVSPQKLG---KLLPHINGIVDMRITKREETPGIQLG--EFFLEGQGADGFPV 179

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
               +   S  +    + + +  T  A+     R    GI F + E     C V  +G R
Sbjct: 180 IYPIKNERSRTVMVEGIADKLGYTSKAIGKTPARSVFEGILFDLKEG----CMVCANGDR 235

Query: 181 LAVAEVDIVAQIAKMPSII---------VPRKAV-------GEILRILSSKDSSVKVSLS 224
           L    +        +   I         VP+K +       GE+  ++S     V+    
Sbjct: 236 LHATILATEYPAPSLTDKINACDGSYALVPKKILLAGKYLSGEVAGVVSVGTEKVQEYCE 295

Query: 225 ESRIHLNI---ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV 281
            +   LNI   +   ++ + I+G +P Y+ VIP +          ++  ++ +       
Sbjct: 296 RAVFGLNIPGCKDAYITSQCIEGAYPRYKEVIPTTYKNSFTTTRDDVVSSLKKAQ----- 350

Query: 282 RIQAVKLSLSSDKLCMTVDNPDMGKAIES-----MNVYYNECPMDICFNYKYLLEIIDNI 336
               ++  +    + M+  N +            +N  Y   P     N  Y+L+ I  +
Sbjct: 351 --ANLRDDVDYGCITMSFSNEEGATIKTKCYSAFVNGNYTGEPFRGLVNIGYVLDGIQEM 408

Query: 337 SSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            + E+  +              +    +        +     V+MP
Sbjct: 409 PAGEIKIE--------------LPENGEYEGWCIRGEQGFTAVVMP 440


>gi|126348431|emb|CAJ90154.1| putative DNA polymerase III beta chain [Streptomyces ambofaciens
           ATCC 23877]
          Length = 383

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 61/284 (21%), Positives = 113/284 (39%), Gaps = 37/284 (13%)

Query: 110 LQSFPESEFPSTKEEEYVYSFELA--SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEE 167
           L++  +             S  L+  +  L   ++   FA  T+     L GI F +  +
Sbjct: 127 LRAILDQRENPMPTSPPTASVRLSFPAPALAAALDAVRFAAGTDPGLPMLAGILFDLEGD 186

Query: 168 DLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
            L L  VATD +R+AVA VD  A        +VP   +   +R L S D  V +++    
Sbjct: 187 SLHL--VATDRYRMAVARVDAGAHDGPRVQALVP-VPLAGAMRALLSHDEPVGLTVGGDS 243

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVD----RVSIMSSVRI 283
           + L       + + +D +FP+Y+ ++   + +   V+    R+A++    R   +S    
Sbjct: 244 VTLETGGGRTAGQCLDHDFPDYRRLVHLPSGRRTLVDVPVFRKALESGPVRTGEVSEQDG 303

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPM--DICFNYKYLLEIIDNISSDEV 341
            +  LS+    L +     D G    ++ V  +      D   +  YLLE ++       
Sbjct: 304 TSHDLSV----LRV----ADDG----TVTVREDGDDHPDDFAVDRGYLLEALEAGG---- 347

Query: 342 VDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + +V    +  + + IR  D           + F +LMP+R+
Sbjct: 348 -RERLVLEFGAPTAPLAIRRPDD---------ASTFSLLMPVRL 381


>gi|216796|dbj|BAA14416.1| DnaN protein [Mycoplasma capricolum subsp. capricolum ATCC 27343]
          Length = 210

 Score =  108 bits (270), Expect = 2e-21,   Method: Composition-based stats.
 Identities = 36/215 (16%), Positives = 83/215 (38%), Gaps = 10/215 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI--- 57
           M  ++ R  +L+ L  A ++I+ KN  P    + L   +  + +  +   +     +   
Sbjct: 1   MNFSINRIVLLDNLSKAAKVIDYKNVNPSLSGIYLNVLNDQVNVITTSGILSFKSILNNQ 60

Query: 58  --PASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
                V   G + +    + +++R+L D   +    E+    E+ I   +S+F +     
Sbjct: 61  NSDLEVKQEGKVLLKPKYVLEMLRRLDDEFVVFSMVED---NELIIKTNNSDFSIGVLNS 117

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
            ++P     E    F L    +K  + +   +M     +  L G+   +   + +     
Sbjct: 118 EDYPLIGFREKGIEFNLNPKEVKKTIYQVFVSMNENNKKLILTGLNLKL--NNNQAIFST 175

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210
           TD  R++   ++I +   +   I +P K   E+ +
Sbjct: 176 TDSFRISQKILEIQSDNNEDIDITIPFKTALELPK 210


>gi|291333916|gb|ADD93596.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 156

 Score =  107 bits (268), Expect = 3e-21,   Method: Composition-based stats.
 Identities = 50/141 (35%), Positives = 85/141 (60%), Gaps = 3/141 (2%)

Query: 113 FPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLC 172
            P S+FPS    ++  S +++SS L +++  T  AMA +++RYYLNG           LC
Sbjct: 1   MPASDFPSIDSADFSSSIKISSSALADMIGSTSVAMAAQDVRYYLNGCLVETKGNA--LC 58

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
            V+TDGHRLA  +  I   + +   +IVPRKAV E+ +I+SS D  + +++S+++I++  
Sbjct: 59  VVSTDGHRLAFTKTSIDG-LKEDFRVIVPRKAVMELQKIISSNDEEITLNVSQNQINVLG 117

Query: 233 ESLSMSVRLIDGEFPNYQNVI 253
              S + +LI+G +P+Y+   
Sbjct: 118 SVFSFTSKLIEGNYPDYEKFF 138


>gi|330947989|gb|EGH48301.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 112

 Score =  106 bits (266), Expect = 4e-21,   Method: Composition-based stats.
 Identities = 33/111 (29%), Positives = 65/111 (58%)

Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268
            R+L+ +D +V + L +  I       + + +L+DG+FP+Y+ V+P   DK +  +   L
Sbjct: 1   ARLLTEQDGTVSIVLGQHHIRATTGEFTFTSKLVDGKFPDYERVLPKGGDKLVLGDRQAL 60

Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
           R+A  R +I+S+ + + ++L L+S +L +  +NP+  +A E ++V YN   
Sbjct: 61  REAFSRTAILSNEKYRGIRLQLASGQLKIQANNPEQEEAEEEISVEYNGDA 111


>gi|149199127|ref|ZP_01876166.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155]
 gi|149137724|gb|EDM26138.1| DNA polymerase III, beta chain [Lentisphaera araneosa HTCC2155]
          Length = 465

 Score =  106 bits (266), Expect = 5e-21,   Method: Composition-based stats.
 Identities = 66/377 (17%), Positives = 144/377 (38%), Gaps = 34/377 (9%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSI 67
           +++ ++  +  R++  K++      V ++      ++ A+     +              
Sbjct: 7   NELQQIKTNFARVL-SKSSNKFLSQVCVEIFAKGFQLTATNLSETLVYRSKEQGGTPSEF 65

Query: 68  TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYV 127
            +S   L  IV  ++ G  +    E E   +V  S+G S  YL     +   +  E +  
Sbjct: 66  LISPETLKRIVAGMKRGDSVVLRYEEEK-LQVKFSNGMSLSYLTIDSVNYPETLSELKST 124

Query: 128 YSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVD 187
              + +  ++     R +   +T+  +  LN IFF      L    VATDG RL    ++
Sbjct: 125 EGLDASDLIVNY--RRAYNTASTDPAKDVLNSIFFDSEAHKL----VATDGRRL----LN 174

Query: 188 IVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFP 247
           I  ++      ++P   + ++L++    +    + +    I +   S     + ++G +P
Sbjct: 175 IKTELQVKQDTLIP---LTKVLKVSKIFEEESLIKVDHKTIQIANSSWLYQCQQVEGGYP 231

Query: 248 NYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKA 307
           N++ V+P S +  + ++   L    D +  + S + +   L    +KL   V++    +A
Sbjct: 232 NWRTVVPESYESTIDLSGCELAFFCDTIRQLQSDKGEH-SLHWHDNKLIFAVNDESGQRA 290

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
              +    N+ P     +  +LL+ +     D      V   L  ++S + I        
Sbjct: 291 ASIVGAQSNDSPKSFAVDPNFLLDALIAAHGD------VQIHLTDASSPICI-------- 336

Query: 368 NNKDNKVNAFYVLMPMR 384
               +  N   V+MP R
Sbjct: 337 ----SSSNTQSVIMPKR 349


>gi|160934676|ref|ZP_02082062.1| hypothetical protein CLOLEP_03549 [Clostridium leptum DSM 753]
 gi|156866129|gb|EDO59501.1| hypothetical protein CLOLEP_03549 [Clostridium leptum DSM 753]
          Length = 393

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 67/391 (17%), Positives = 141/391 (36%), Gaps = 35/391 (8%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND--GLLEIKASGPEIEITGAIP 58
           MK TV R  + + +    +I+     IP    +L++A++  G+L I  +     I   + 
Sbjct: 1   MKFTVNRLLMYQAVKTVLKIVRPNKEIPELGGLLIEADESSGMLTITGTDIRTHIQRRLR 60

Query: 59  AS-VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
              ++  G + +   +L +++  L D     F +       V +  G   + + S     
Sbjct: 61  LEHIEESGGMILK-PILAEMLYLLTD----EFVELESEKNLVTLRSGSCQYTISSLAAKS 115

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGI-FFHINEEDLKLCAVAT 176
           FP  +      + ++    + +L+ RT FA   + I Y   G  +  I+       A AT
Sbjct: 116 FPKLQIPFPEDTIQVKG--INSLIRRTVFAANGDNIDYNRAGFSYVKISFRGGMATAEAT 173

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           DG  +AV      A       +I+  KA+  +  +++  +  + V +         E L 
Sbjct: 174 DGSCIAVTASPHCAD--GDLDMILHEKALTVLDSVVNPNEE-LYVGIVGKVAVFMKEDLF 230

Query: 237 MSVRLIDGEFPNYQNVIPCSN-DKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDK 294
            S  L  G +     ++   +   +  ++   L + V  +S++   +  + + L +  DK
Sbjct: 231 FSTMLFTGNYLEASKLLSNFHGSYQATIDAKQLYELVSGLSVIFDTKDDKCINLRIEPDK 290

Query: 295 LCMTV-----DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSD---------- 339
           +C  V      +    KA  ++    +          K L + +  ++            
Sbjct: 291 VCAQVITGRCSSASQVKAAGTIPTPADGFHYR----PKLLTDCLRRLAGPVQMEIDQQGF 346

Query: 340 EVVDDEVVFRLDSSNSSVFIRGKDKDSKNNK 370
            V++        S      I  ++   K  K
Sbjct: 347 AVMNANGSRYFISPRGPARIYQEENPEKKPK 377


>gi|149200630|ref|ZP_01877633.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155]
 gi|149136279|gb|EDM24729.1| DNA polymerase III subunit beta [Lentisphaera araneosa HTCC2155]
          Length = 153

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 41/144 (28%), Positives = 67/144 (46%), Gaps = 3/144 (2%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+ER  +   +  A  +I  + T+ +  H LL      L I A+G +  IT  + A+
Sbjct: 1   MKFTIERDRLNNAVKKAGSVISARPTVSIMGHFLLDVQANHLVITATGLDQTITLTLEAN 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           ++  G  TVSA +L  +V++L +G       E  +   VN+    + F LQS    +FP 
Sbjct: 61  IEQEGKATVSAKILSQLVQRLPNGDVSVSLDERGM---VNVVCARNAFSLQSLDPLQFPI 117

Query: 121 TKEEEYVYSFELASSVLKNLVERT 144
              EE    F +++S L   +   
Sbjct: 118 EGREESRREFMISTSQLCGNIANV 141


>gi|1352303|sp|P29438|DPO3B_SERMA RecName: Full=DNA polymerase III subunit beta
 gi|407187|gb|AAA02925.1|AAA02925 DnaN [Serratia marcescens]
          Length = 78

 Score =  106 bits (264), Expect = 8e-21,   Method: Composition-based stats.
 Identities = 23/78 (29%), Positives = 39/78 (50%), Gaps = 1/78 (1%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          MK  VER  +L+ L      +  + T+P+  ++LLQ  +G L +  +  E+E+   +  S
Sbjct: 1  MKFIVEREHLLKPLQQVSSPLGGRPTLPILGNLLLQVTEGSLLLTGTDLEMEMVARVALS 60

Query: 61 V-DVCGSITVSAHLLYDI 77
               G+ TV A   +DI
Sbjct: 61 QPHEPGATTVPARKFFDI 78


>gi|171913191|ref|ZP_02928661.1| DNA polymerase III, beta subunit [Verrucomicrobium spinosum DSM
           4136]
          Length = 507

 Score =  105 bits (263), Expect = 1e-20,   Method: Composition-based stats.
 Identities = 64/397 (16%), Positives = 137/397 (34%), Gaps = 41/397 (10%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPASV 61
           IT+  +++   L    +II + +T+PV   + ++   +G + + A+  +  +T  +    
Sbjct: 25  ITLPVAELKSALSGFSKIIPKNSTLPVLQCLKIERTQEGWICLTATDLDRFVTLRLEQPA 84

Query: 62  D-VCGSITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEF 118
                S+ V    L  +V+      +I       N    + ++         ++ P  E+
Sbjct: 85  KGEPASLLVPFDNLQKVVKTCDKNQRIHLEAGPNNHHSIKFDLVGQIGETKSKAPPVEEY 144

Query: 119 PSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDG 178
           P         +    S  +  L   T     T++ R  L G+   +++ D     V TDG
Sbjct: 145 PEIPRINGEPTPVSESLRMAILDAMT--CACTDDTRPPLKGVCVDVSKHDAHY-VVGTDG 201

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL-----SESRIHLNIE 233
           H L          +    S+++PR             +  +KVS      SE  + ++  
Sbjct: 202 HHLYSCN---SFNLPFKKSLLIPRHKFLAWKDFNLDGEWKMKVSDTSDAKSEVSLQISSR 258

Query: 234 SLSMSVRLIDGEFPNYQNVIPCSN--DKELRVNCTNLRQAVDRVSIM--SSVRIQAVKLS 289
                 + + G FPN+Q  +P        L +   NL+     +  M     + Q + + 
Sbjct: 259 RWRFITKQLPGNFPNWQQCVPDPTLAKTHLELVPDNLQAVAQVIQSMPCHDPKHQTIGIQ 318

Query: 290 LSSDKL-CMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            +  ++  +T   P    +  S+ +       + I  + +YL + +              
Sbjct: 319 WNGKEVALLTKQEPTDPWSRISIPDAKGTGPDVTIFCDRRYLSKAL--------EYGLTT 370

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             L    S + +             +     ++MP+R
Sbjct: 371 IGLIDEISPLRL------------YRGGRQMIIMPVR 395


>gi|15828473|ref|NP_325833.1| DNA polymerase III, beta chain [Mycoplasma pulmonis UAB CTIP]
 gi|18202668|sp|Q98RK6|DPO3B_MYCPU RecName: Full=DNA polymerase III subunit beta
 gi|14089415|emb|CAC13175.1| DNA POLYMERASE III, BETA CHAIN [Mycoplasma pulmonis]
          Length = 373

 Score =  104 bits (261), Expect = 2e-20,   Method: Composition-based stats.
 Identities = 65/350 (18%), Positives = 137/350 (39%), Gaps = 22/350 (6%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGA---- 56
           MK+ +E+S  L  L +  +IIE  N+         Q     + + +S  +I I       
Sbjct: 1   MKLFLEKSRFLRFLENTTKIIESNNSNYELRGAYFQVRQDKIILISSNEDISIKNEYLLD 60

Query: 57  -IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            I    +      V   LL +I++K  D   +   K       + I     ++ +     
Sbjct: 61  GIKNKTEGESDFLVLNSLLKNIIKKCSDSIILEKEK-----NTLKIFSDLQSYEINLLDH 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
             FP  K        +L +   K  ++   FA      +  L     +++ ++  L  VA
Sbjct: 116 ERFPDIKFGLNNSQLQLKTEQFKQALKNVVFAADLSNAQELLL-NSVNLSLKNNILTLVA 174

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           T+  R+A     I  + ++  ++ +  K V E++ +  S   ++ +S     + +   +L
Sbjct: 175 TNRARIA--MQKIKTEDSQEFNLTINSKVVKELISLSMSN--TLILSPGTFELKIKSGNL 230

Query: 236 SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI-QAVKLSLSSDK 294
            +  ++I+  + N +NV P   +  + ++   L   +D+VSI++  +    + +  +  K
Sbjct: 231 EIKTKVIEIPYMNVENVFPNKFNFVIHIDKKELLSLIDKVSIVNDEKNGNKILIEYNPSK 290

Query: 295 LCMTVDN----PDMGKAIESMNVYYNECPMDICF--NYKYLLEIIDNISS 338
               +      PD+G +    + +  E  + + F  N  YL E I+    
Sbjct: 291 KEKKLKLSSYWPDLGFSEVFSDNFEVESEILLKFFINANYLKESINVFDG 340


>gi|170596510|ref|XP_001902790.1| DNA polymerase III, beta subunit [Brugia malayi]
 gi|158589311|gb|EDP28360.1| DNA polymerase III, beta subunit, putative [Brugia malayi]
          Length = 190

 Score =  104 bits (259), Expect = 3e-20,   Method: Composition-based stats.
 Identities = 28/104 (26%), Positives = 55/104 (52%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+ ++ R+ +L  L     ++ER+N I +   + ++A  G +++ A+  +I I  ++ A 
Sbjct: 21  MRFSIGRTSLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 80

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG 104
           V   G + VSAH L+DIV+KL     ++F       +  ++S  
Sbjct: 81  VSTEGEVKVSAHTLHDIVKKLPADLDVNFEVNEFANSVTSLSSE 124


>gi|71894027|ref|YP_278135.1| DNA polymerase III beta subunit [Mycoplasma synoviae 53]
 gi|71850815|gb|AAZ43424.1| DNA polymerase III beta subunit [Mycoplasma synoviae 53]
          Length = 377

 Score =  101 bits (253), Expect = 2e-19,   Method: Composition-based stats.
 Identities = 64/378 (16%), Positives = 153/378 (40%), Gaps = 19/378 (5%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI--EITGAIP 58
           M   + +  I E++       +  ++   +    ++ N   L + A+   I  +I   + 
Sbjct: 1   MLFHINKKKIEEIIHTLINYTDSSDSFDSNKCFYIKINSDFLHVIANSNSIAAQIKTKVD 60

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
            +   ++  G I ++A +L D+V KL+    I      E    + I    S F L     
Sbjct: 61  ENKIRLEKKGEILINALMLKDVVSKLEGFITI-----QEKNNSILIYDVYSKFELSKKQT 115

Query: 116 SEFPSTKEEEYVYSFELASSVLKNLVERTH---FAMATEEIRYYLNGIFFHINEEDLKLC 172
             F   + +++   F + S  LKN+++       A         L  I     +E+ K+ 
Sbjct: 116 ESFRKVEFDQHNNVFSVESKELKNVIKNASVSPSAANENTTDRRLKYINIKGKKEENKIV 175

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             +T+  R +     +          +V  K++ ++  +  S    + + ++E RI +  
Sbjct: 176 LYSTNFSRFST--DSLNVDNVNEFDFLVDAKSLKKL--LPQSAPKDINLFINEDRIGVFY 231

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
           + + + +R+   ++ N  ++   S   E+ +  +     + +V  +SS + +      + 
Sbjct: 232 DDIKIFLRVAKEKYLNVDSLFKLSKYTEVLIEKSEFLSLIQKVYFLSSEQKKIYIELNNE 291

Query: 293 DKLCMTVDNPDMGKAIE-SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLD 351
           +++ +  +  ++GK+   S ++  N   + + FNY YL + +  ++ + +V  + V   D
Sbjct: 292 NQMKLNYEVSEIGKSETISSSLTVNGPKVKVAFNYVYLHDALQTLN-EGLVSAKFVLSND 350

Query: 352 SSNSSVFIRGKDKDSKNN 369
             N    I  K  ++ +N
Sbjct: 351 DENKCTRIILKSTENDSN 368


>gi|262316900|emb|CBA18128.1| putative beta subunit of DNA polymerase III [Paenibacillus phage
           phiBP]
          Length = 164

 Score =  100 bits (250), Expect = 3e-19,   Method: Composition-based stats.
 Identities = 26/174 (14%), Positives = 65/174 (37%), Gaps = 23/174 (13%)

Query: 214 SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCTNLRQAV 272
           S D  V  + +        E  +   R+++G +P+ Q +        ++ VN   L  ++
Sbjct: 7   SDDGQVVYAFA------RTERFTFYSRVLEGVYPDTQRMSAVPEGTTKVEVNKRELLDSI 60

Query: 273 DRVSIMS-SVRIQAVKLSLSSDKLCMTVDNPDMGKAIESM-NVYYNECPMDICFNYKYLL 330
           + +  ++   +   ++L ++  ++ +       GKA ES+  + +      I  N KY +
Sbjct: 61  ELIYTLAKEEKSNMIRLDIAEKEVSIRGKGKQTGKASESIVPINFTGQDFTISLNAKYAM 120

Query: 331 EIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           + +  +       + V          +F    +            + +V++P R
Sbjct: 121 DALKALDG-----ERVTLIFSGKMQPIFFLSGEDKQ---------SIHVVLPYR 160


>gi|300865072|ref|ZP_07109898.1| hypothetical protein OSCI_1460024 [Oscillatoria sp. PCC 6506]
 gi|300336936|emb|CBN55048.1| hypothetical protein OSCI_1460024 [Oscillatoria sp. PCC 6506]
          Length = 246

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 35/174 (20%), Positives = 64/174 (36%), Gaps = 20/174 (11%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQA--NDGLLEIKASGPEIEITGAIPA 59
           K+   + ++   L    + +  K T PV  +VLL A      +++      + I  +  A
Sbjct: 65  KLICTQDNLANHLELVSKAVPAKPTHPVLGNVLLVACKKTQRVQLTVFDMRLAIQTSFEA 124

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKE------------------NELGTEVNI 101
           +V   G +T+   LL DIV K   G      +E                          +
Sbjct: 125 NVQSPGDMTIPVGLLSDIVGKFSPGDITLVSREALKQEGEDSQNSTTLPEAVNNSPVATL 184

Query: 102 SHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRY 155
                 + ++     EFP+  E +   +  +    LK  ++ + FA AT+E +Y
Sbjct: 185 IAACGRYQVRGISSEEFPAIPEVKTAQTIRIPPETLKEGLKGSLFATATDETKY 238


>gi|323939236|gb|EGB35449.1| DNA polymerase III beta subunit protein [Escherichia coli E482]
          Length = 72

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 22/72 (30%), Positives = 36/72 (50%), Gaps = 1/72 (1%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIP-A 59
          MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +   
Sbjct: 1  MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGTLSLTGTDLEMEMVARVALV 60

Query: 60 SVDVCGSITVSA 71
               G+ TV A
Sbjct: 61 QPHEPGATTVPA 72


>gi|170581927|ref|XP_001895901.1| DNA polymerase III, beta subunit [Brugia malayi]
 gi|158597001|gb|EDP35242.1| DNA polymerase III, beta subunit, putative [Brugia malayi]
          Length = 99

 Score =  100 bits (250), Expect = 4e-19,   Method: Composition-based stats.
 Identities = 27/90 (30%), Positives = 51/90 (56%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          M+ ++ R+ +L  L     ++ER+N I +   + ++A  G +++ A+  +I I  ++ A 
Sbjct: 1  MRFSIGRTXLLSTLSRVSGVVERRNAIDILACINIKAQHGSIKLMATDLDISIFASLAAD 60

Query: 61 VDVCGSITVSAHLLYDIVRKLQDGAQISFF 90
          V   G + VSAH L+DIV+KL     ++F 
Sbjct: 61 VSTEGEVKVSAHTLHDIVKKLPADLNVNFE 90


>gi|171910402|ref|ZP_02925872.1| hypothetical protein VspiD_04500 [Verrucomicrobium spinosum DSM
           4136]
          Length = 495

 Score =   99 bits (248), Expect = 7e-19,   Method: Composition-based stats.
 Identities = 59/393 (15%), Positives = 136/393 (34%), Gaps = 41/393 (10%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQ-ANDGLLEIKASGPEIEITGAIPASVD-VCG 65
           +++   L    +II + +  PV   + ++   DG + + A+  +  +T  +         
Sbjct: 21  AELKPALSGFSKIISKNSPQPVLQCLKIERTQDGWICLTATDLDRFVTLRLEQPAKGEPV 80

Query: 66  SITVSAHLLYDIVRKLQDGAQISFFK--ENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
           S+ V    L  +V+      ++       N    + +++        ++ P  EFP   +
Sbjct: 81  SLLVHFDNLQKVVKTCDKSQRVYLEAGPNNNHSIKFDLAGQLGETKSKAPPVEEFPEIPK 140

Query: 124 EEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAV 183
            +      +  ++   L++      +T++ RY LNG+   +++       V TDG  L  
Sbjct: 141 IKGE-PIPVPENMRLALIDAMA-CTSTDQNRYVLNGVCVDVSDPQAHY-VVGTDGRHLFS 197

Query: 184 AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKD-----SSVKVSLSESRIHLNIESLSMS 238
                  ++    S+++P              +     S V  + SE  +  +       
Sbjct: 198 CN---SLKLPLKKSLVIPCHKFLGWREFNLDGEWKMKVSDVSDANSEVLVQFSSRRWRFI 254

Query: 239 VRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIM--SSVRIQAVKLSLSSDK 294
            RLI   +PN+Q  +P        L+VN  N++  V  +  M     + Q + +     +
Sbjct: 255 SRLIKDNYPNWQVCVPDPVEAKTHLQVNADNIQNVVQTIQRMPCHDPKYQTMGIQWKDGQ 314

Query: 295 LCMTV--DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + +    ++ +    I           +    + +Y ++ +      E   D     +  
Sbjct: 315 MALLAKQESNEPWSRIVIPESKGTGSEVTYFCDRRYFVKAL------EYGLD--TMGIVD 366

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             S +               +     V+MP+R+
Sbjct: 367 PMSPLRF------------FRSGRQLVIMPVRL 387


>gi|134034795|gb|ABO45720.1| DNA polymerase III beta subunit [Microcystis botrys N-C 161/1]
 gi|134034805|gb|ABO45727.1| DNA polymerase III beta subunit [Microcystis botrys N-C 264]
          Length = 111

 Score = 99.5 bits (247), Expect = 8e-19,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
              L + ++ V+++S  +   VK SL   +D+L + V++PD+G A ESM         DI
Sbjct: 1   RKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDI 60

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            FN KYL++ +  + +++     +  +L++S   V                +   Y++MP
Sbjct: 61  AFNVKYLMDGLKALPNND-----IQMKLNASTQPVIFTP---------LGGLKMTYLVMP 106

Query: 383 MRI 385
           ++I
Sbjct: 107 VQI 109


>gi|134034783|gb|ABO45712.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 31]
 gi|134034786|gb|ABO45714.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 57]
 gi|134034792|gb|ABO45718.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 143]
 gi|134034798|gb|ABO45722.1| DNA polymerase III beta subunit [Microcystis viridis N-C 169/7]
 gi|134034801|gb|ABO45724.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 228/1]
 gi|134034808|gb|ABO45729.1| DNA polymerase III beta subunit [Microcystis sp. N-C 324/1]
 gi|134034892|gb|ABO45776.1| DNA polymerase III beta subunit [Microcystis aeruginosa N-C 123/1]
 gi|134034895|gb|ABO45778.1| DNA polymerase III beta subunit [Microcystis cf. flos-aquae N-C
           144]
 gi|134034898|gb|ABO45780.1| DNA polymerase III beta subunit [Microcystis cf. ichthyoblabe N-C
           279]
          Length = 111

 Score = 99.2 bits (246), Expect = 9e-19,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
              L + ++ V+++S  +   VK SL   +D+L + V++PD+G A ESM         DI
Sbjct: 1   RKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAAEIQGESGDI 60

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            FN KYL++ +  + +++     +  +L++S   V                +   Y++MP
Sbjct: 61  AFNVKYLMDGLKALPNND-----IQMQLNASTQPVIFTP---------LGGLKMTYLVMP 106

Query: 383 MRI 385
           ++I
Sbjct: 107 VQI 109


>gi|134034789|gb|ABO45716.1| DNA polymerase III beta subunit [Microcystis sp. N-C 118/2]
          Length = 111

 Score = 98.4 bits (244), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 31/123 (25%), Positives = 60/123 (48%), Gaps = 16/123 (13%)

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSL--SSDKLCMTVDNPDMGKAIESMNVYYNECPMDI 322
              L + ++ V+++S  +   VK SL   +D+L + V++PD+G A ESM         DI
Sbjct: 1   RKQLIRCLELVAVLSDQKNNLVKFSLDSENDRLSLAVESPDLGSAKESMAATIQGESGDI 60

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
            FN KYL++ +  + +++     +  +L++S   V                +   Y++MP
Sbjct: 61  AFNVKYLMDGLKALPNND-----IQMQLNASTQPVIFTP---------LGGLKMTYLVMP 106

Query: 383 MRI 385
           ++I
Sbjct: 107 VQI 109


>gi|1079500|gb|AAC43712.1| DnaN protein [Mycobacterium smegmatis]
 gi|1585268|prf||2124373C DNA polymerase III beta
          Length = 262

 Score = 98.0 bits (243), Expect = 2e-18,   Method: Composition-based stats.
 Identities = 50/266 (18%), Positives = 90/266 (33%), Gaps = 30/266 (11%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQAN---DGLLEIKASGPEIEITGAIP 58
           K  V R D  + +    R +    T P S      A    D  L I     E+     + 
Sbjct: 12  KFRVVREDFADAVAWVARSLP---TGPPSGCWQASAEPAPDEGLTISGFDYEVSAEVKVS 68

Query: 59  ASV----DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFP 114
           A +     V G  T +        R+   G +    +  +L     ++       L    
Sbjct: 69  AEIASAGSVSGVRTAAVRHHQGAARQACRGQRRGHPRVPDLRQRALLAADARGRGLPGAA 128

Query: 115 ESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAV 174
            +                    ++  + +   A   ++    L GI   I+ E + L   
Sbjct: 129 CAARGD---------RCDPVGSVRRAIGQVAVAAGRDDTLPMLTGIRVEISGESVVL--A 177

Query: 175 ATDGHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLS-------ES 226
           ATD  RLAV E+  V        +++VP K + E  +  +  +  V ++L        + 
Sbjct: 178 ATDRFRLAVRELTWVTTAGDVEAAVLVPAKTLAEAAKAGTDGN-QVHLALGSGASVGKDG 236

Query: 227 RIHLNIESLSMSVRLIDGEFPNYQNV 252
            + +  E    + RL+D EFP ++ +
Sbjct: 237 LLGIRSEGKRSTTRLLDAEFPKFRQL 262


>gi|207091961|ref|ZP_03239748.1| DNA polymerase III subunit beta [Helicobacter pylori
           HPKX_438_AG0C1]
          Length = 146

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 37/149 (24%), Positives = 67/149 (44%), Gaps = 5/149 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAI-PA 59
           MKI+V ++D+   L +    +++K+   ++ H+ L+     L +KAS  +I +   I   
Sbjct: 1   MKISVSKNDLENALRYLQAFLDKKDASSIASHIHLEVIKEKLFLKASDSDIGLKSYIFTQ 60

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           S D  G  T++     DI+  L+D   I   K++     + I    S+F L  F   EFP
Sbjct: 61  SSDKEGVGTINGKKFLDIISCLKDSNIILETKDDS----LVIKQNKSSFKLPMFDADEFP 116

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAM 148
                E   S E+ +  L +  ++    +
Sbjct: 117 EFPVIEPKVSIEVNTPFLVDAFKKIAPVI 145


>gi|86740415|ref|YP_480815.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3]
 gi|86567277|gb|ABD11086.1| DNA polymerase III beta subunit family protein [Frankia sp. CcI3]
          Length = 408

 Score = 97.6 bits (242), Expect = 3e-18,   Method: Composition-based stats.
 Identities = 61/399 (15%), Positives = 140/399 (35%), Gaps = 38/399 (9%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPASVDVCGSI 67
           D+L  L     +++RK+  P     L+ A+ DG L +  + P   ++  +P +    G  
Sbjct: 21  DLLAALTTVGTVLDRKSRPP-WNAALITADLDGRLTVTGASPAATVSVRLPGAARSAGQF 79

Query: 68  TVSAHLLYDIVRKL------QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
            V    L  + + L      +D  ++    +        ++ GD    L   P  + P  
Sbjct: 80  LVDGWALTQMCKALVRGEHRRDTDELPVLLDGSFPPAPTVTIGDYTVPLTGLPVEDHPGA 139

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                  +  +  +  +  V+R   A+  ++    L G++         +    TD +RL
Sbjct: 140 CRPAPTIA-TVDRAAWRAAVDRVLPAVGRDDTLRVLTGLYVSFAPGLATV--AGTDRYRL 196

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES-----RIHLNIESLS 236
           AV  +        +  +++P K +       +    ++    +ES     R+       +
Sbjct: 197 AVDVLPATVTGPAVQELLLPAKILAACAETWTGPSVTIGRRRAESVHDVDRVTFTCGQTT 256

Query: 237 MSVRLIDGEFPNYQNVI-PCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQ-----AVKLS 289
           +S+    G +P ++ ++           +   +   V RV +I+++          + L+
Sbjct: 257 VSLVETGGAYPPWRRLLGSLDPQHTATFDRATVAAHVARVLAILTAHPTTRRPIMTMTLT 316

Query: 290 LSSDKLCMTVDNPDMGK--AIESMNVYYNECPMDI--CFNYKYLLEIIDNISSDEVVDDE 345
           L+ D L +    P+ G   +  ++    +     +   FN           +   +  D 
Sbjct: 317 LTPDGLRVAPLLPEHGARVSAPTLPATTSLTDGTVRWAFNA-----AYLRAALAALPGDT 371

Query: 346 VVFR-LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           V+F         V +   ++ +           ++LMP+
Sbjct: 372 VLFSGQADVAKPVLLTSPEQGASIPP-----YRHLLMPI 405


>gi|313112551|ref|ZP_07798215.1| DNA polymerase III beta subunit protein [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310625133|gb|EFQ08424.1| DNA polymerase III beta subunit protein [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 125

 Score = 97.2 bits (241), Expect = 4e-18,   Method: Composition-based stats.
 Identities = 23/136 (16%), Positives = 63/136 (46%), Gaps = 16/136 (11%)

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVR-IQAVKLSLSSDKLCMTVDNPDMGKAI 308
           +NVIP  +   + ++     + ++R S++ + R    +++S +  ++ +     ++G+ +
Sbjct: 1   RNVIPADSRTRVTIDTKEFIETIERASLIITERLKNPLRISFTEGRVVVRCQ-TNLGRVV 59

Query: 309 ESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKN 368
           +  N       ++I FN +YLL+ + N  +++     V   +    S V +   + +   
Sbjct: 60  DEFNADCEGDEVEIGFNNRYLLDALRNARTEK-----VRMEISGPLSPVKVLPAEGN--- 111

Query: 369 NKDNKVNAFYVLMPMR 384
                 +  Y+++P+R
Sbjct: 112 ------DFLYLVLPVR 121


>gi|290958477|ref|YP_003489659.1| DNA polymerase III subunit beta [Streptomyces scabiei 87.22]
 gi|260648003|emb|CBG71110.1| putative DNA polymerase III beta chain [Streptomyces scabiei 87.22]
          Length = 369

 Score = 96.8 bits (240), Expect = 5e-18,   Method: Composition-based stats.
 Identities = 51/280 (18%), Positives = 103/280 (36%), Gaps = 60/280 (21%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                +A+  L   ++   FA++T+     L G+ F I   +L+   VATD +R+AVA  
Sbjct: 127 SVRLSVAAPELAAALDTVRFAVSTDPGLPMLGGVLFDIEGGNLR--TVATDRYRMAVARA 184

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
            I          +VP   + + +R LS    + ++++   R+ L+      + + +D +F
Sbjct: 185 GITGHDEGRVQAVVPT-PLVDAMRALSVGGGTARLAVDGDRVTLDAGDGQAAGQCLDHDF 243

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGK 306
           P+Y+ ++P    +   V+    R+A++            V+                 G+
Sbjct: 244 PDYRRLLPADGGRRALVDVAAFREALE---------TGPVR----------------SGE 278

Query: 307 AIESMNVYYNECPMDICF---------------------NYKYLLEIIDNISSDEVVDDE 345
           A   ++V   E    +                       N  +   +    +      D 
Sbjct: 279 AGADLSVLRVEDDGTVALCSDSDSDSDGDGAGAAHRVGVNRGF--LLDALDALAAGTWDR 336

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   + +  + + IR  D +          AF VLMP+R+
Sbjct: 337 LALEVSAPTAPIAIRRPDDE---------GAFSVLMPVRL 367



 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 22/121 (18%), Positives = 39/121 (32%), Gaps = 6/121 (4%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           +++V   ++   L      +     +P+   VL     G L   A+            + 
Sbjct: 129 RLSVAAPELAAALDTVRFAVSTDPGLPMLGGVLFDIEGGNLRTVATDRYRMAVARAGITG 188

Query: 62  DVCGSI--TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
              G +   V    L D +R L  G   +    +  G  V +  GD     Q   + +FP
Sbjct: 189 HDEGRVQAVVPTP-LVDAMRALSVGGGTARLAVD--GDRVTLDAGDGQAAGQCL-DHDFP 244

Query: 120 S 120
            
Sbjct: 245 D 245


>gi|167933105|ref|ZP_02520192.1| DNA polymerase III, beta subunit [candidate division TM7
           single-cell isolate TM7b]
          Length = 119

 Score = 96.1 bits (238), Expect = 8e-18,   Method: Composition-based stats.
 Identities = 27/123 (21%), Positives = 51/123 (41%), Gaps = 4/123 (3%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+++V + +  + L +A RI   +  +P+  ++LL+ +   L + A   E+     I   
Sbjct: 1   MELSVLQENFTKALNNASRIATSRTQLPILNNILLRTDGNRLLVAAMNMEVATMHYIGTK 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           +   GSITV A L+ + V  L         +    G  + I  G  +  +      +FP 
Sbjct: 61  IIKPGSITVPARLITEFVSSLPKEKIDLKVE----GEHLIIKAGKYSSVINGIAADDFPE 116

Query: 121 TKE 123
              
Sbjct: 117 LPA 119


>gi|111019151|ref|YP_702123.1| DNA polymerase III, beta chain [Rhodococcus jostii RHA1]
 gi|110818681|gb|ABG93965.1| probable DNA polymerase III, beta chain [Rhodococcus jostii RHA1]
          Length = 317

 Score = 94.1 bits (233), Expect = 4e-17,   Method: Composition-based stats.
 Identities = 52/259 (20%), Positives = 107/259 (41%), Gaps = 32/259 (12%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
             +  L ++ L        FA         L G     + + L+L  V TD +RLAV   
Sbjct: 85  ECTVVLRTTDLLTAFGSVRFAADPHSDFPVLRGCLLETDHDVLRL--VTTDRYRLAVGTA 142

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
            ++  + +  S +VP   + +   +L   D +V V +    I L      +  RL+DG F
Sbjct: 143 TLLEPLDEPISAVVPCTFLDDAAGLLRRHD-TVTVVVGADSITLRCGGEQLGTRLVDGAF 201

Query: 247 PNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKL-SLSSDKLCMTVDNPDMG 305
           P+++++ P     E   +  +LR      ++++    + V L  L S ++ +       G
Sbjct: 202 PDHRSLSPLDRGIEYTFSSADLR------ALLADAGDR-VDLGVLESGEIVV-------G 247

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
           +      V +      +  N  +LLE +D +       +++ F++    + + IR +   
Sbjct: 248 RQGTEQPVLFQ-----VQVNAGFLLEAVDALPG-----EQLTFQVGEPITPLAIRPR--- 294

Query: 366 SKNNKDNKVNAFYVLMPMR 384
              +  +  +A+ +LMP++
Sbjct: 295 -SIHTSDPASAYSLLMPLQ 312


>gi|57234984|ref|YP_180909.1| DNA polymerase domain-containing protein [Dehalococcoides
           ethenogenes 195]
 gi|57225432|gb|AAW40489.1| DNA polymerase domain protein [Dehalococcoides ethenogenes 195]
          Length = 425

 Score = 93.4 bits (231), Expect = 6e-17,   Method: Composition-based stats.
 Identities = 37/252 (14%), Positives = 93/252 (36%), Gaps = 32/252 (12%)

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
             +E+     +++  R  L G+ F     + KL  V+ DG+RLA+  +D   +     + 
Sbjct: 122 EALEQVLTFTSSQSSRPVLQGVCFKAA--NGKLDLVSADGYRLAIVTLDYQGE----GTA 175

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSE-----SRIHLNIESLSMSVRLIDGEFPNYQNVI 253
           ++ R  +  + + L           ++     + + L  E +      + G++P+Y  +I
Sbjct: 176 VIHRDELKGVAQALRRARRVRLAFETDEATKRTYLVLETELIRYRWSGMSGDYPDYHPLI 235

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV 313
           P      + +  T   +A+  + +++ V+   V L++   K+ ++  +    K +  ++ 
Sbjct: 236 PTGFKTAVSLESTETLRAIASLKVLTDVKGCPVDLAIGDGKVVISATDD---KGVTELSA 292

Query: 314 YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNK 373
                P+ +  +  +  + +            V   +   +     +             
Sbjct: 293 ETAGEPVRLRLDGGFFTDALKACGGI------VELNITEPSLPTLFKAD----------- 335

Query: 374 VNAFYVLMPMRI 385
                V+MPM I
Sbjct: 336 -GFQLVVMPMAI 346


>gi|213692129|ref|YP_002322715.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|213523590|gb|ACJ52337.1| DNA polymerase III, beta subunit [Bifidobacterium longum subsp.
           infantis ATCC 15697]
 gi|320458246|dbj|BAJ68867.1| hypothetical protein BLIJ_1280 [Bifidobacterium longum subsp.
           infantis ATCC 15697]
          Length = 357

 Score = 93.0 bits (230), Expect = 8e-17,   Method: Composition-based stats.
 Identities = 61/390 (15%), Positives = 127/390 (32%), Gaps = 44/390 (11%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++ V+  +   ++ HA R++ER N      +V L A D  L I A+G      G + A+V
Sbjct: 3   RVLVDAREFANMVAHAARVLERDNP-----YVALDAADDGLAISAAGDSQWSHGRVDATV 57

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
              GS  VS   L  +   +  G           G  + +  G+++  ++   E + P+ 
Sbjct: 58  LEAGSAVVSGLWLNALANAMPSGE----IGVETNGGYLTLRGGEASLRMRVGEEKDRPAE 113

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                     + +     L             +  L  + F      L     AT  +R 
Sbjct: 114 PAAPE-RMVPVDADAYAALCGSVAPEAGGTRDQPVLASVRFVAAGGLL----TATATNRY 168

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
                 I          +     V    + +++      +  ++  + ++    + ++ L
Sbjct: 169 MAGRRSIPVGGMPDGEWLADADWVKRNAKGVNA------IGFTDRMMVVDTGGFTDAIVL 222

Query: 242 IDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLSSDKLCMT 298
             G++P    +   P        V+   L  A   + S+    R+  + L L      + 
Sbjct: 223 TAGQYPMVDRLFDKPEEPAGVAVVDRRALMDAARMLKSVCFDSRMGIIPLILDERDGMLR 282

Query: 299 VDNPDMGKAIES-----MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           V     G+  +S     +        +++  N  YLL ++  + +D V   +        
Sbjct: 283 VRYAGDGQDADSQGVRLLEADITG-DVNVKLNADYLLTVLAGMDADRVSVVKTR-----E 336

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
              V     D   +           ++MP+
Sbjct: 337 MKPVLFEQDDSAVEQ----------LVMPV 356


>gi|291164800|gb|ADD80830.1| DnaN [Rhodococcus phage ReqiDocB7]
          Length = 371

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 57/376 (15%), Positives = 146/376 (38%), Gaps = 34/376 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNT-IPVSCHVLLQA-----NDGLLEIKASGPEIEITG 55
           ++  E + + + L  A RI   K T I     +LL+        G +   A+   +    
Sbjct: 3   EVVFETAALADTLKKAARIAPMKGTEIEKYAGILLEILPDGMGGGQVVAHATNGGVFYKE 62

Query: 56  AI-PASVDVCGSIT-VSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSF 113
            + P S+    +   V + +   I+  L  G+      + E G ++ I+ G +   +   
Sbjct: 63  WMNPLSIQGEATTWRVPSAVTSGIINALPIGSGKKCTFKLE-GNKIRITSGRTRASV-GL 120

Query: 114 PESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCA 173
            + E+P  ++ +Y  +  L     +  +++  +A++ +E     + ++            
Sbjct: 121 IDREYPEWEDFDYEETSPLNGFGAR--LDQVAWAVSRKES-QATSSVYLDGES------I 171

Query: 174 VATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           VATDG++L  A + +  +     S++VP   +  +L  +      V      + + L   
Sbjct: 172 VATDGYKLVTAPLALNMEED---SVLVPMAVLAPLLSQMDETRGRV----DGNFLCLAPN 224

Query: 234 SLS-MSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLS 291
             + +   L+   +P    V     +  +  N   + + V R+ ++++  R   + +++ 
Sbjct: 225 DYTQIKCVLLGENYPPVSKVTSQETENTILANREQMVEIVQRIMTVIAKDRQTDLWVTIG 284

Query: 292 SDKLCMTVDNPDMGKAIE---SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVF 348
           ++++     +     +I+    +       P+   F  +Y    ++ +     +   + +
Sbjct: 285 NEEISFYTQDEAGVNSIDDALELPGQCIHEPIKFKFTPEY---FVNAVGKAPGILVTINY 341

Query: 349 RLDSSNSSVFIRGKDK 364
            +D   S+V   G+D+
Sbjct: 342 SIDRPLSAVRFEGEDE 357


>gi|213585141|ref|ZP_03366967.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 93

 Score = 92.2 bits (228), Expect = 1e-16,   Method: Composition-based stats.
 Identities = 31/94 (32%), Positives = 56/94 (59%), Gaps = 1/94 (1%)

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           + + A +    S+IVPRK V E++R+L   ++ ++V +  + I  ++     + +L+DG 
Sbjct: 1   MPLEASLP-SHSVIVPRKGVIELMRMLDGGENPLRVQIGSNNIRAHVGDFIFTSKLVDGR 59

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS 279
           FP+Y+ V+P + DK L   C  L+QA  R +I+S
Sbjct: 60  FPDYRRVLPKNPDKHLEAGCDILKQAFARAAILS 93


>gi|392772|gb|AAC43045.1| DNA polymerase III beta subunit [Caulobacter crescentus CB15]
          Length = 96

 Score = 91.8 bits (227), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 32/96 (33%), Positives = 59/96 (61%)

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSN 257
           +IVPRK + E  R++ S   +V + +S  ++     + +++ ++IDG FP+Y  VIP  N
Sbjct: 1   VIVPRKTIAEARRLMESAGETVDLQVSPQKVRFEFGAAALTSKVIDGAFPDYMRVIPRDN 60

Query: 258 DKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSD 293
            K L ++     +AVDRV+ +S+ + ++VKL++  D
Sbjct: 61  AKILTLDNDLFAKAVDRVANISAEKSRSVKLAVEPD 96


>gi|322691163|ref|YP_004220733.1| hypothetical protein BLLJ_0974 [Bifidobacterium longum subsp.
           longum JCM 1217]
 gi|320456019|dbj|BAJ66641.1| hypothetical protein BLLJ_0974 [Bifidobacterium longum subsp.
           longum JCM 1217]
          Length = 344

 Score = 91.1 bits (225), Expect = 2e-16,   Method: Composition-based stats.
 Identities = 62/379 (16%), Positives = 123/379 (32%), Gaps = 44/379 (11%)

Query: 14  LGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHL 73
           + HA R++ER N      +V L A D  L I A+G      G + A+V   GS  VS   
Sbjct: 2   VAHAARVLERDNP-----YVALDAADDGLAIGAAGDSQWSHGRVDATVLEAGSAVVSGLW 56

Query: 74  LYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELA 133
           L  +   +  G           G  + +  G+++  ++   E + P+           + 
Sbjct: 57  LNALANAMPSGE----IGVEADGVYLTLRGGEASLRMRVGDEGDRPAEPAAPE-RMVPVD 111

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           +     L             +  L  + F      L     AT  +R       I     
Sbjct: 112 ADAYAALCGSVAPEAGGTRDQPVLASVRFVAAGGLL----TATATNRYMAGRRSIPVGGV 167

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
                +     V    + +++      +  ++  + ++    + ++ L  G++P    + 
Sbjct: 168 PDGEWLADADWVKRNAKGVNA------IGFTDRMMVVDTGGFTDAIMLTAGQYPMVDRLF 221

Query: 254 --PCSNDKELRVNCTNLRQAVDRV-SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES 310
             P        V+   L  A   + S+    R+  + L L      + V     G+  +S
Sbjct: 222 DRPGDPAGVAVVDRRALMDAARMLKSVCFDSRMGIIPLILDERDGMLRVRYAGDGQDADS 281

Query: 311 -----MNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
                +        +D+  N  YLL ++  + +D V   +           V     D  
Sbjct: 282 QGVRLLEADITG-DVDVKLNADYLLTVLAGMDADRVSVVKTR-----EMKPVLFEQDDSA 335

Query: 366 SKNNKDNKVNAFYVLMPMR 384
            +          +++MP+R
Sbjct: 336 VE----------HLVMPVR 344


>gi|330861744|emb|CBX71918.1| hypothetical protein YEW_AJ01850 [Yersinia enterocolitica W22703]
          Length = 82

 Score = 90.7 bits (224), Expect = 4e-16,   Method: Composition-based stats.
 Identities = 29/96 (30%), Positives = 50/96 (52%), Gaps = 14/96 (14%)

Query: 290 LSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFR 349
           +S ++L +T +NP+  +A E ++V Y+   M+I FN  Y+L++++ +       ++V   
Sbjct: 1   MSQNQLKITANNPEQEEAEEILDVSYDGAEMEIGFNVSYVLDVLNALKC-----EDVSLL 55

Query: 350 LDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           L  S SSV I                A YV+MPMR+
Sbjct: 56  LTDSVSSVQIED---------GASQAAAYVVMPMRL 82


>gi|302869183|ref|YP_003837820.1| DNA polymerase III subunit beta [Micromonospora aurantiaca ATCC
           27029]
 gi|302572042|gb|ADL48244.1| DNA polymerase III beta chain [Micromonospora aurantiaca ATCC
           27029]
          Length = 378

 Score = 89.9 bits (222), Expect = 5e-16,   Method: Composition-based stats.
 Identities = 59/280 (21%), Positives = 112/280 (40%), Gaps = 34/280 (12%)

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +E        L+ + L   V+   FA+  +     L+G+   +  + ++L  VATD HRL
Sbjct: 117 EEITVTTRLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRL 174

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVR 240
           AVA V          S ++P  AV E+  +L      + +V ++  R+ + +    ++  
Sbjct: 175 AVARVGGTVDGP-PVSALLPVAAVDELRALLDLDGADTAEVVVATDRVTVTVAGRPLTAV 233

Query: 241 LIDGEFPNYQNVIPCS----NDKELRVNCTNLRQAV--DRVSIMSS----VRIQAVKLSL 290
            +  +FP+Y+ ++           +  +   LR A+  D V +       V  + V L L
Sbjct: 234 PLPYDFPDYRRLLRAQLGDVPTYRIPFDGAALRAALTADGVPVCHRAHEGVEHEVVALGL 293

Query: 291 SS-DKLCMTVDNPDMGKAIESMNVYYNE----CPMDICFNYKYLLEIIDNISSDEVVDDE 345
               +L +   N  +                   + +  N +YLL+ + +       D +
Sbjct: 294 DGRGELRLVDPNGVVAAGGVEGGAGAAGAGGPDALRVAVNREYLLDALGS------GDGQ 347

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +V  LD   + + +R  D           +AF VLMP+R+
Sbjct: 348 LVLELDGPIAPLAVRRADD---------AHAFSVLMPVRL 378



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG 48
           ++ + R+D+   +      +     +PV   VL++     + + A+ 
Sbjct: 124 RLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRLVATD 170


>gi|65319986|ref|ZP_00392945.1| COG0592: DNA polymerase sliding clamp subunit (PCNA homolog)
           [Bacillus anthracis str. A2012]
          Length = 126

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 23/106 (21%), Positives = 40/106 (37%), Gaps = 8/106 (7%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+  V      + L    + I  K  IP+   + + A+   + + AS   I I   IP++
Sbjct: 1   MEFIVNHKHFTQALSDVSKAISTKAIIPILSGIKITADQSGITLIASNSNIFIEKFIPSA 60

Query: 61  VDVC--------GSITVSAHLLYDIVRKLQDGAQISFFKENELGTE 98
           +D          G+I V A    +I++K+     I    E      
Sbjct: 61  IDDEQITTILQAGTIVVPAKYFIEIIKKMPSDIVIKSKNEQTXTII 106


>gi|196230263|ref|ZP_03129126.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428]
 gi|196225860|gb|EDY20367.1| DNA polymerase III beta chain [Chthoniobacter flavus Ellin428]
          Length = 97

 Score = 89.9 bits (222), Expect = 7e-16,   Method: Composition-based stats.
 Identities = 30/108 (27%), Positives = 49/108 (45%), Gaps = 16/108 (14%)

Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNIS 337
           +SS +  +VKL  + + + +  + PD+G+A ES+ V Y      I FN ++L   +  + 
Sbjct: 5   LSSEKSNSVKLVFTKNNIEIAANTPDVGEARESLAVAYKGREFSIAFNPEFLQAPLRVL- 63

Query: 338 SDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                +DEV   +    S   I+ +               YVLMPMRI
Sbjct: 64  ----TNDEVYLDMIDEMSPGVIKIQSP-----------FLYVLMPMRI 96


>gi|325972869|ref|YP_004249933.1| DNA polymerase III subunit beta [Mycoplasma suis str. Illinois]
 gi|325989362|ref|YP_004249061.1| dna polymerase III, beta chain protein [Mycoplasma suis KI3806]
 gi|323574447|emb|CBZ40097.1| dna polymerase III, beta chain protein [Mycoplasma suis]
 gi|323651471|gb|ADX97553.1| DNA polymerase III, beta subunit [Mycoplasma suis str. Illinois]
          Length = 388

 Score = 89.5 bits (221), Expect = 8e-16,   Method: Composition-based stats.
 Identities = 54/369 (14%), Positives = 132/369 (35%), Gaps = 32/369 (8%)

Query: 33  VLLQANDGLLEIKASGPEIEITGAI---PASVDVCGSITVSAHLLYDIVRKLQDGAQISF 89
           +L++     L   A+    E               G   +SA +L  ++  L++  +I F
Sbjct: 33  ILIKCKKEELLFYANNGFTECKLTFKSSEIKYKKQGECVISAKILLTLLENLKNCEEIGF 92

Query: 90  FKENELGTEVNISHGDSNFYLQSFPES---EFPSTKEEEYVYSFELA-----SSVLKNLV 141
            K       + IS       L    +    +    +E+    +F+       +S  K+  
Sbjct: 93  KKIE--NALLQISSDKFECNLICLTKKLLIKDIQIEEDMKKLTFDFDFLNLINSKFKDFY 150

Query: 142 ERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIV 200
             +       +     + I F    +  ++  + +D  R+  A   +   +        +
Sbjct: 151 RSSSSQPQKIQKNSVFSTINFRKKIDSEEINIILSDSSRILKANFALKELEEVNFFEFNL 210

Query: 201 PRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
           P + +  I+ +      S K++     + + +N E+L    +L  G +P+   +      
Sbjct: 211 PVEILNSIISLFRENHDSKKINFYLKNNSLLINSENLIFKTQLYSGTYPDLLKMFSAQEK 270

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN-- 316
               VN + L  A++R  ++S   +      +  + L +   +   G   E + +  N  
Sbjct: 271 INFSVNKSTLISALERNLLLSEKNLSFACYKIFDNNLTLEYRDSSKGYLREEIEIQNNKG 330

Query: 317 -ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
            E  ++   N  +L +++  I      D E++F +  +   + + G+++          N
Sbjct: 331 KEKFIEFSLNSLFLKQLLKGIP-----DSEIIFSISETFKPIILFGEEE--------GKN 377

Query: 376 AFYVLMPMR 384
              +++P++
Sbjct: 378 FKQLILPLK 386


>gi|213581832|ref|ZP_03363658.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-0664]
          Length = 79

 Score = 89.5 bits (221), Expect = 9e-16,   Method: Composition-based stats.
 Identities = 28/93 (30%), Positives = 47/93 (50%), Gaps = 14/93 (15%)

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           ++L +T +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  
Sbjct: 1   NQLKITANNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTD 55

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           S SSV I               +A YV+MPMR+
Sbjct: 56  SVSSVQIEDA---------ASQSAAYVVMPMRL 79


>gi|321309520|ref|YP_004191849.1| DNA polymerase III subunit beta [Mycoplasma haemofelis str.
           Langford 1]
 gi|319801364|emb|CBY92010.1| DNA polymerase III beta subunit [Mycoplasma haemofelis str.
           Langford 1]
          Length = 376

 Score = 88.8 bits (219), Expect = 1e-15,   Method: Composition-based stats.
 Identities = 59/362 (16%), Positives = 134/362 (37%), Gaps = 24/362 (6%)

Query: 31  CHVLLQANDGLLEIKASG----PEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQ 86
            +V ++ ++  + +         ++EI       +   GS +++  L   ++ KL+    
Sbjct: 29  DNVHIKCSNNEVILIICNENYFFKLEIKKDEDLKIKKTGSFSLNIKLFNSLLEKLKPSNN 88

Query: 87  ISFFKENELGTEVNISHGDSNFYLQSFPES-EFPSTKEEEYVYSFELASSVLKNLVERTH 145
           +  FK  +   +     GD    L    E    P     E      ++ S+LK    +  
Sbjct: 89  LEIFKSEDNNIQFF--SGDFECNLIFLEEKVNNPEKINLEEKDKISISYSILKLTYSKLK 146

Query: 146 FAMATEEIRYY--LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRK 203
                ++      L  I          L   ++D +R    +           +I  P  
Sbjct: 147 NFCKNQDSSQNTLLKCIHLRKLNNSEILEVWSSDNYRTVFGQFKFKCDREFEINIS-PSI 205

Query: 204 AVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
               +   L   +  +++ +++       + L M V++  G FP   +    +N+KE  V
Sbjct: 206 INTLLFLFLEYSEEDLEIWINDDDFFCKKDDLIMKVKIERGNFPELSHWFNTNNNKEFLV 265

Query: 264 NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDI 322
           + ++L  A++R  ++S+  IQ     L ++KL +   + + G   E + +  + +  +D 
Sbjct: 266 SKSDLLSAIERNLLLSNKVIQTTFYRLENEKLWIEYKDSEKGFCKEFIKIKKFTDGDIDF 325

Query: 323 CFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP 382
             N   L  +I NI S     + ++F +  S   + +   ++     +         ++P
Sbjct: 326 SLNNNLLKPLIKNIDS-----ENIIFSISDSFKPIVLLSSNESEIFKQF--------ILP 372

Query: 383 MR 384
           +R
Sbjct: 373 IR 374


>gi|402336|gb|AAA02816.1| dnaN protein [Salmonella enterica subsp. enterica serovar
          Typhimurium]
          Length = 62

 Score = 88.4 bits (218), Expect = 2e-15,   Method: Composition-based stats.
 Identities = 19/60 (31%), Positives = 32/60 (53%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          MK TVER  +L+ L      +  + T+P+  ++LLQ  DG L +  +  E+E+   +  S
Sbjct: 1  MKFTVEREHLLKPLQQVSGPLGGRPTLPILGNLLLQVADGALSLTGTDLEMEMVARVTLS 60


>gi|29566368|ref|NP_817935.1| gp84 [Mycobacterium phage Corndog]
 gi|29425093|gb|AAN02016.1| gp84 [Mycobacterium phage Corndog]
          Length = 392

 Score = 87.2 bits (215), Expect = 4e-15,   Method: Composition-based stats.
 Identities = 57/392 (14%), Positives = 141/392 (35%), Gaps = 58/392 (14%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           ++ V    +   +    ++       P S  + + A  G L ++ +  ++     IP   
Sbjct: 49  ELKVRDDALTPEVAWLAKMSTG--AAPASALIRVTALVGALVLRRTNMDLFQESVIPVEG 106

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPST 121
               ++ V A  L   ++ +  G  +    ++E    + I   D+   +++    E+P  
Sbjct: 107 AAQATVLVEAGKLLAGLKSV-SGMLVLTVNDDE----LIIKSSDATVKVRAANV-EYPIW 160

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
            E E      +  +     + +   +  T+E       + F   +       V TD  RL
Sbjct: 161 PEFESTADQAIIGTSQ---LTQVLTSAGTDEALPQFMVVSFDAGQ------MVTTDRFRL 211

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS---LSESR-IHLNIESLSM 237
           +                + P  A+    + +S     V V    + ++  I L+    ++
Sbjct: 212 SRINY-----GPSEFRAVAPTAAL----KAMSKSQGVVYVEPGKVGDADWIELSSAGRTV 262

Query: 238 SVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              +   +   +Q++IP     ++ ++  +L  A              V +S++ D + +
Sbjct: 263 LAPMPQQDLFKWQHLIPKDPPVQVALSRRDLLDA---------AGGDEVTISVAPDAIKV 313

Query: 298 TVDNP--DMGKAIESMNVYYNE--CPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
           T  +   ++ + ++ +++  +E   P+ +    KYL E +  I +       ++    + 
Sbjct: 314 TSHSEGVEVERTLKPLSIIKHELDGPLVVRMRSKYLNEALRGIDT-----GTLLMAGSAG 368

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           N  V  +          D   +  +++MP+RI
Sbjct: 369 NRPVVFQ----------DVSESDLHLIMPVRI 390


>gi|416236|dbj|BAA03628.1| DNA polymerase III beta subunit [Mycoplasma capricolum subsp.
           capricolum ATCC 27343]
          Length = 165

 Score = 86.4 bits (213), Expect = 7e-15,   Method: Composition-based stats.
 Identities = 34/157 (21%), Positives = 71/157 (45%), Gaps = 8/157 (5%)

Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQA 271
           L     ++K+ + E  I   I+++     LIDG+FPN Q   P   +  + V   ++ + 
Sbjct: 1   LLDNAENLKIIIVEGYITFIIDNVIFQSNLIDGKFPNVQIAFPTKFETIITVKQKSILKV 60

Query: 272 VDRVSIMSSVRIQA-VKLSLSSDKLCMTVDNPDMGKAIESMN--VYYNECPMDICFNYKY 328
           + R  +++   + A V + ++ DK+       ++GK  E  +  V      + I FN ++
Sbjct: 61  LSRFDLVADDGLPAIVNIKVNEDKIEFKSFISEVGKYEEDFDDFVIEGNKSLSISFNTRF 120

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
           L++ I  +S     +D +  +L +S   + I     +
Sbjct: 121 LIDAIKTLS-----EDRIELKLINSTKPIVINNVYDE 152


>gi|284034688|ref|YP_003384619.1| DNA polymerase III subunit beta [Kribbella flavida DSM 17836]
 gi|283813981|gb|ADB35820.1| DNA polymerase III beta chain [Kribbella flavida DSM 17836]
          Length = 366

 Score = 86.1 bits (212), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 46/272 (16%), Positives = 110/272 (40%), Gaps = 46/272 (16%)

Query: 130 FELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIV 189
             L    L + + +   + A  +    L  +   + E+++ L  VATD +RLAV ++   
Sbjct: 121 VTLGGPELASAIRQVTPSAAEGDELPVLACVRIELAEDEVTL--VATDRYRLAVRKLHPQ 178

Query: 190 AQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLN--------IESLSMSVRL 241
           A      +++V    + E+ R ++S   SV++ ++ +++ L+           +   +++
Sbjct: 179 AFSGTPGAVLVRASELTELTRWVASA-GSVQLDVTPTQVVLSRSEPHGALAGDVR-ELQV 236

Query: 242 IDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTV 299
           ++ E+P YQ ++         + V+   L + +    +++        LS+   ++ +  
Sbjct: 237 VEEEYPAYQAILEGLGPPVCRVLVDRLALAELLGAADVVA--------LSIEPSQVTVEG 288

Query: 300 DNPDMGKAIE------SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSS 353
            +P    A +       +    +  P+ I F  + L   +        V  +V+  + + 
Sbjct: 289 SSP----ASQPSVPGGHLAALVSGEPLRIGFTARLLTAAL-----HTGVGPDVLLEIHAP 339

Query: 354 NSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           N  V IR  D+ +            ++MP R+
Sbjct: 340 NRPVVIRSADQGTFTT---------LVMPTRL 362



 Score = 41.0 bits (95), Expect = 0.34,   Method: Composition-based stats.
 Identities = 11/73 (15%), Positives = 28/73 (38%), Gaps = 2/73 (2%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIP-ASVDVCGS 66
           ++   +          + +PV   V ++  +  + + A+    + +    P A     G+
Sbjct: 127 ELASAIRQVTPSAAEGDELPVLACVRIELAEDEVTLVATDRYRLAVRKLHPQAFSGTPGA 186

Query: 67  ITVSAHLLYDIVR 79
           + V A  L ++ R
Sbjct: 187 VLVRASELTELTR 199


>gi|309804110|ref|ZP_07698191.1| DNA polymerase III beta subunit, N-terminal domain protein
          [Lactobacillus iners LactinV 11V1-d]
 gi|308163878|gb|EFO66144.1| DNA polymerase III beta subunit, N-terminal domain protein
          [Lactobacillus iners LactinV 11V1-d]
          Length = 93

 Score = 85.7 bits (211), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 20/84 (23%), Positives = 38/84 (45%), Gaps = 4/84 (4%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          MK  ++R+  L+ L +  + I     IP+   + +  ++  L +  S   I I   IP S
Sbjct: 1  MKFIIDRNLFLKNLNNVLKAISSNTAIPILKGIKIDLSENTLTLTGSDTNISIKIDIPKS 60

Query: 61 ----VDVCGSITVSAHLLYDIVRK 80
              ++  GSI + A    +I++ 
Sbjct: 61 DDLHIESTGSIVLPARFFSEIIKN 84


>gi|315504340|ref|YP_004083227.1| DNA polymerase iii beta chain [Micromonospora sp. L5]
 gi|315410959|gb|ADU09076.1| DNA polymerase III beta chain [Micromonospora sp. L5]
          Length = 384

 Score = 85.3 bits (210), Expect = 1e-14,   Method: Composition-based stats.
 Identities = 59/281 (20%), Positives = 111/281 (39%), Gaps = 40/281 (14%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                L+ + L   V+   FA+  +     L+G+   +  + ++L  VATD HRLAVA V
Sbjct: 122 TTRLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRL--VATDRHRLAVARV 179

Query: 187 DIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
                     S ++P  AV E+  +L      S +V ++  R+ + +    ++   +  +
Sbjct: 180 GGTVDGP-PVSALLPVVAVDELRALLDLDGADSAEVVVATDRVTVTVAGRPLTAVPLPYD 238

Query: 246 FPNYQNVIPCS----NDKELRVNCTNLRQAV--DRVSIMSS----VRIQAVKLSLSS-DK 294
           FP+Y+ ++           +  +   LR A+  D V +       V  + V L L    +
Sbjct: 239 FPDYRRLLRAQLGDVPTYRIPFDGAALRAALTADGVPVCHRAHEGVEHEVVALGLDGRGE 298

Query: 295 LCMTVDNPDMGKAIESMNVYYNE----------CPMDICFNYKYLLEIIDNISSDEVVDD 344
           L +   N  +     +                   + +  N +YLL+ + +       D 
Sbjct: 299 LRLVDPNGVVAAGGVAGVEGVEGGAGAAGAGGPDALRVAVNREYLLDALGS------GDG 352

Query: 345 EVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           ++V  LD   + + +R  D           +AF VLMP+R+
Sbjct: 353 QLVLELDGPIAPLAVRRADD---------AHAFSVLMPVRL 384



 Score = 46.8 bits (110), Expect = 0.006,   Method: Composition-based stats.
 Identities = 7/47 (14%), Positives = 20/47 (42%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG 48
           ++ + R+D+   +      +     +PV   VL++     + + A+ 
Sbjct: 124 RLVLSRTDLAAAVDAVRFAVGADPGLPVLSGVLVEVEPDGVRLVATD 170


>gi|238060457|ref|ZP_04605166.1| MerR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
 gi|237882268|gb|EEP71096.1| MerR family transcriptional regulator [Micromonospora sp. ATCC
           39149]
          Length = 362

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 53/273 (19%), Positives = 107/273 (39%), Gaps = 33/273 (12%)

Query: 122 KEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
           +E   V    L+ + L   ++   FA+  +     L+G+ F +  + ++L  VATD HR+
Sbjct: 114 EENPMVTCLVLSRADLAAAIDAVRFAVGADPDLPVLSGVLFDVAADGVRL--VATDRHRM 171

Query: 182 AVAEVDIVAQIAKMPSIIVPRKAVGEILRILS-SKDSSVKVSLSESRIHLNIESLSMSVR 240
           AV+ V           ++ P   V     +L     S  ++ L  + + +++     +  
Sbjct: 172 AVSRVPGRVDGP-AQRVLAPVDLVDRARALLDADGGSEARLRLDGAAVTVSVAGREATGP 230

Query: 241 LIDGEFPNYQNVI----PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS----S 292
            +  EFP+YQ ++      +    + V+   LR  V        +R + V + ++     
Sbjct: 231 ALPHEFPDYQRLLGGHAGGTPAYRIPVDVPALRAEVADGPPARVLRHEGVDVPVTVLGLD 290

Query: 293 DKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           D   + V +           V +         N +YLL+ +D          +++  LD 
Sbjct: 291 DVGALRVLDSAALADAAPEAVRF-------GVNGRYLLDALDAGD-----RGQLLLELDG 338

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             + + +R  D           +AF +LMP+R+
Sbjct: 339 PIAPLAVRRPDD---------ADAFSILMPIRL 362



 Score = 48.7 bits (115), Expect = 0.002,   Method: Composition-based stats.
 Identities = 15/81 (18%), Positives = 28/81 (34%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           + + R+D+   +      +     +PV   VL       + + A+         +P  VD
Sbjct: 122 LVLSRADLAAAIDAVRFAVGADPDLPVLSGVLFDVAADGVRLVATDRHRMAVSRVPGRVD 181

Query: 63  VCGSITVSAHLLYDIVRKLQD 83
                 ++   L D  R L D
Sbjct: 182 GPAQRVLAPVDLVDRARALLD 202


>gi|226361288|ref|YP_002779066.1| MerR family transcriptional regulator [Rhodococcus opacus B4]
 gi|226239773|dbj|BAH50121.1| putative MerR family transcriptional regulator [Rhodococcus opacus
           B4]
          Length = 345

 Score = 84.5 bits (208), Expect = 3e-14,   Method: Composition-based stats.
 Identities = 45/249 (18%), Positives = 98/249 (39%), Gaps = 38/249 (15%)

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
            V    FA   +     L G  F  + + L+L  V TD +RLAV    ++    +  S +
Sbjct: 126 AVSAVRFAADADSDFPVLRGCLFETDHDVLRL--VTTDRYRLAVGTAAVLEPPDRPISAV 183

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
           VP   + +   +L  +  +V V +    + L  ++  ++  L+ G FP+++ + P     
Sbjct: 184 VPCTFLDDAAGLLR-RHRTVTVCVGADSVTLRCDTEQLTTGLVHGAFPDHRALSPRDPGI 242

Query: 260 ELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECP 319
           E   +   LR      ++++    +        D   +             + V +    
Sbjct: 243 EHTFSSAALR------ALLTDAGDRV-------DLGVLESG---------EIVVGHPGTE 280

Query: 320 MDICF----NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
             + F    N  +LLE +D +       +++ FR+    + + +R +      +  +  +
Sbjct: 281 QPVRFHVQVNAGFLLEAVDALPG-----EQLTFRVGGPITPLAVRPR----SVHTSDPAS 331

Query: 376 AFYVLMPMR 384
           A+ +LMP++
Sbjct: 332 AYSLLMPLQ 340


>gi|169837663|ref|ZP_02870851.1| DNA polymerase III, beta chain [candidate division TM7 single-cell
           isolate TM7a]
          Length = 143

 Score = 83.7 bits (206), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 33/155 (21%), Positives = 69/155 (44%), Gaps = 19/155 (12%)

Query: 235 LSMSVRLIDGEFPNYQNVIPCS-NDKELRVNCTNLRQAVDRVSIM---SSVRIQAVKLSL 290
           + +  R ID +FP+Y++++  S ++K++ +N  +    + R +I    +         + 
Sbjct: 1   MEILTRTIDLQFPDYKSILNNSQHNKKILLNTKDFLSVLKRTAIFVRDNKESKNGGIFNF 60

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           S++KL +T  + +  +  E +        + I  N K+LL+ I  I          V  L
Sbjct: 61  SNNKLLLTGTS-ENAQIKEEIVTIQEGEDLRISLNVKFLLDYISTIKGKVT-----VLEL 114

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
            ++ SSV ++ +D D          + Y  MP+ +
Sbjct: 115 LNNKSSVIVKDEDND---------KSLYFTMPLAL 140


>gi|320450667|ref|YP_004202763.1| putative DNA polymerase III subunit beta [Thermus scotoductus
           SA-01]
 gi|320150836|gb|ADW22214.1| putative DNA polymerase III, subunit beta [Thermus scotoductus
           SA-01]
          Length = 340

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 40/203 (19%), Positives = 83/203 (40%), Gaps = 21/203 (10%)

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVK 220
              + EE  K+  VATDG+R+ +  +     + K  + ++P + V E L+ L   +  V 
Sbjct: 131 LLEVGEE--KVRVVATDGYRIHIYTLPAQGHVEK--NYLIPNQ-VKEALKTL---EGPVV 182

Query: 221 V--SLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND-KELRVNCTNLRQAVDRVSI 277
           +  + S + + L  ++  +   L   +FP Y +V P       L      L+ A+ R  +
Sbjct: 183 LHEAGSMNALVLEAQNGRVGFPLTKDQFPPYASVFPTQPPVNTLIAERKALQSALKRALL 242

Query: 278 MSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIES-MNVYYNECPMDICFNYKYLLEIIDNI 336
           ++     ++ L +  + L +   +     A E  +         ++  N K+LL+ +   
Sbjct: 243 VAHPEDHSIHLQVEDEGLKVQALDHTHTPASEEVVPGEGQG---EVRVNGKFLLQAL--- 296

Query: 337 SSDEVVDDEVVFRL-DSSNSSVF 358
             +E  ++ V   L     S + 
Sbjct: 297 --EECKEERVHLHLHSGPRSPLL 317



 Score = 38.3 bits (88), Expect = 1.8,   Method: Composition-based stats.
 Identities = 32/220 (14%), Positives = 69/220 (31%), Gaps = 30/220 (13%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSI 67
            D+LE L  A                LL+  +  + + A+         +PA   V  + 
Sbjct: 115 EDLLEALLKALS----------LGKTLLEVGEEKVRVVATDGYRIHIYTLPAQGHVEKNY 164

Query: 68  TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS-TKEEEY 126
            +    + + ++ L +G  +     +     +   +G   F L       + S    +  
Sbjct: 165 LIPNQ-VKEALKTL-EGPVVLHEAGSMNALVLEAQNGRVGFPLTKDQFPPYASVFPTQPP 222

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
           V +       L++ ++R       E+       I   + +E LK+ A       L     
Sbjct: 223 VNTLIAERKALQSALKRALLVAHPEDHS-----IHLQVEDEGLKVQA-------LDHTHT 270

Query: 187 DIVAQI---AKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
               ++        + V  K +  +  +   K+  V + L
Sbjct: 271 PASEEVVPGEGQGEVRVNGKFL--LQALEECKEERVHLHL 308


>gi|1361492|pir||A64200 DNA polymerase III beta chain - Mycoplasma genitalium
          Length = 267

 Score = 83.4 bits (205), Expect = 5e-14,   Method: Composition-based stats.
 Identities = 42/262 (16%), Positives = 108/262 (41%), Gaps = 19/262 (7%)

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATE-EIRYYLNGIFFHINEEDLKLCAVAT 176
           F    +      F++  S+L   +++   +++   EI    NG+ F+      ++   A+
Sbjct: 9   FNEKNDLSEFNQFKINYSLLVKGIKKIFHSVSNNREISSKFNGVNFN-GSNGKEIFLEAS 67

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-------IH 229
           D ++L+V E+    Q  +    I+    +  I      +D S+     +         + 
Sbjct: 68  DTYKLSVFEIK---QETEPFDFILESNLLSFINSFNPEEDKSIVFYYRKDNKDSFSTEML 124

Query: 230 LNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMS-SVRIQAVKL 288
           +++++  +S   ++ +FP          + ++ V    L+ A+ R+  ++ + R     +
Sbjct: 125 ISMDNFMISYTSVNEKFPEVNYFFEFEPETKIVVQKNELKDALQRIQTLAQNERTFLCDM 184

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
            ++S +L +     ++G ++E ++   +    ++I FN   LL+ I++  S+     E+ 
Sbjct: 185 QINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIESFESN-----EIN 239

Query: 348 FRLDSSNSSVFIRGKDKDSKNN 369
           F    ++    I  K +     
Sbjct: 240 FDFQGNSKYFLITSKSEPELKQ 261


>gi|33322987|gb|AAQ07230.1|AF496538_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
           lactis]
          Length = 116

 Score = 83.0 bits (204), Expect = 7e-14,   Method: Composition-based stats.
 Identities = 40/119 (33%), Positives = 62/119 (52%), Gaps = 3/119 (2%)

Query: 88  SFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFA 147
            F  E + G ++ I+   +++ +     S +P   E     SF L S  L+ L+ +T FA
Sbjct: 1   EFTFEVKEGNQIQITSDKADYVINGLDASAYPRLXEI-AGTSFSLPSKTLRELITQTVFA 59

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206
           ++TEE R  L G+ F      +K  AVATD HRL+   VDI A  ++  S+I+P K + 
Sbjct: 60  VSTEESRPTLTGVNFSFKNGQIK--AVATDSHRLSQRIVDIAAGPSEDLSLIIPGKNLQ 116


>gi|330937295|gb|EGH41306.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 84

 Score = 82.6 bits (203), Expect = 9e-14,   Method: Composition-based stats.
 Identities = 30/98 (30%), Positives = 55/98 (56%), Gaps = 14/98 (14%)

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           + L+S +L +  +NP+  +A E ++V YN   ++I FN  YLL+++  +++     ++V 
Sbjct: 1   MQLASGQLKIQANNPEQEEAEEEISVEYNGDSLEIGFNVSYLLDVLGVMTT-----EQVR 55

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             L  SNSS  ++  D D         ++ YV+MPMR+
Sbjct: 56  LILSDSNSSALVQESDND---------DSAYVVMPMRL 84


>gi|297157743|gb|ADI07455.1| putative transcriptional regulator, MerR family protein
           [Streptomyces bingchenggensis BCW-1]
          Length = 392

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 50/248 (20%), Positives = 96/248 (38%), Gaps = 39/248 (15%)

Query: 152 EIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI 211
           E    L  +   I+ E+++L  VATD +RLAV  +  ++   +   +++    + E    
Sbjct: 163 EEFPVLGRVLVEIDGEEIRL--VATDRYRLAVRALRPLSITGEPCELLLDIDELTETAAW 220

Query: 212 LSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE---FPNYQNVIPC--SNDKELRVNCT 266
                  V V +   +  +         R + G    FP Y+ V+    +    +  +  
Sbjct: 221 ARRLPE-VAVEVEGRQARVRGGGE---CRELAGSDEVFPAYRMVLDDLGAARHRVIADRG 276

Query: 267 NLRQAV-DRVSIMSSVRIQAVKLSLSSDKLCMTVDNP-----DMGKAI----ESMNVYYN 316
            LR+AV DR+        +A+ L+ + D L ++ + P     +   A      ++     
Sbjct: 277 GLRRAVADRL----DAGHRAITLTTTGDDLLISTEKPTEIPEEAEDAERPGATALRAIRT 332

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNA 376
             P+ I F+   LL  +D       V  +V+  + S    V +R  D+ S          
Sbjct: 333 GPPLRIAFDPGVLLPALDA-----SVGPDVLLEIASEARPVVVRSADQGSFTT------- 380

Query: 377 FYVLMPMR 384
             ++MP+R
Sbjct: 381 --LVMPVR 386


>gi|168205264|ref|ZP_02631269.1| DNA polymerase III beta subunit, C- domain protein [Clostridium
           perfringens E str. JGS1987]
 gi|170663111|gb|EDT15794.1| DNA polymerase III beta subunit, C- domain protein [Clostridium
           perfringens E str. JGS1987]
          Length = 356

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 58/367 (15%), Positives = 139/367 (37%), Gaps = 41/367 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI +  +D+ +++  A ++ +  +   +         + +  I A+   +   G     
Sbjct: 1   MKIIIN-NDLRKIILSATKVSDTVSIKTI--------KNSMTMISANSNSLFFKGVYANK 51

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
            +V     V      +++R L    +I   K +     + +  GD+          E   
Sbjct: 52  TEVENVEFVLGKKPLELIRMLDLTEEIVISKTDRG---IEVKSGDTRASFA-----EEKE 103

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +  +   +   AS    + V+R  +A +TE I+  LN I F I   D K   + +D  R
Sbjct: 104 FEGLDLDMNLNEASVFDIDAVKRVIYAASTENIQAALNCIEFSI--NDNKCSFICSDSLR 161

Query: 181 LAVAEVDIVAQIAKMPSI-----IVPRKAVGEILRILSSKDSSVKVSL--SESRIHLNIE 233
           +A    ++    AK+  +     ++ +    E  ++ S     V  S   S +++     
Sbjct: 162 VARVTEELEPFNAKVSQVKDCEFLIHK---NEFSKLASILQGKVAFSYLPSVNKVIFING 218

Query: 234 SLSMSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS 291
            + + V+ I+                   + V+   L +++ +  ++       V + ++
Sbjct: 219 PIMIGVKCINEPILPLGKFCDELKKTTNSIFVDRAELIKSIQKTLLI----DNKVSIEIN 274

Query: 292 SDKLCMTVDNPDMG-KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
           ++++ ++  N +        ++V     P  +  N KY L++++ I      D+E+   +
Sbjct: 275 NNEVKVSSINKNADLSTTIKVSVDNISVPTTVYLNAKYALDMLNAID-----DEEINIYI 329

Query: 351 DSSNSSV 357
           +S    +
Sbjct: 330 ESPLRPI 336


>gi|213052919|ref|ZP_03345797.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E00-7866]
          Length = 72

 Score = 81.0 bits (199), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 26/86 (30%), Positives = 42/86 (48%), Gaps = 14/86 (16%)

Query: 300 DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFI 359
           +NP+  +A E ++V Y    M+I FN  Y+L++++ +       + V   L  S SSV I
Sbjct: 1   NNPEQEEAEEILDVSYGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQI 55

Query: 360 RGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +A YV+MPMR+
Sbjct: 56  EDA---------ASQSAAYVVMPMRL 72


>gi|302559421|ref|ZP_07311763.1| OmpA/MotB family protein [Streptomyces griseoflavus Tu4000]
 gi|302477039|gb|EFL40132.1| OmpA/MotB family protein [Streptomyces griseoflavus Tu4000]
          Length = 585

 Score = 80.7 bits (198), Expect = 3e-13,   Method: Composition-based stats.
 Identities = 45/241 (18%), Positives = 97/241 (40%), Gaps = 21/241 (8%)

Query: 147 AMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG 206
           A  T      LN + F      L +   ATD +R+ V  +  +A   +  S+ +    + 
Sbjct: 357 ATFTNGNFEQLNAVHFDAKPGTLTIW--ATDRYRVDVWSIPTLAG-GEAFSLSIFAPEIY 413

Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLID-GEFPNYQNVIPCSNDKELRVNC 265
            +   + ++   V++   E     + E   +S+   + G  P+Y+ +I  +    +RV  
Sbjct: 414 SLK--IFNQKERVRMEAGEIFTEFDSEGKMISLGCTEFGNLPDYERLIRSNYATHVRVAR 471

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
            +L  A++R    SS +   + L L S  +  + +  P   K ++ ++V ++     I  
Sbjct: 472 ASLLDAIERTVNQSSAKNTPIVLDLGSDGRSEIGIRFPIDRKPLKVVSVEHSGNETSIGL 531

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +  + L  + +  SD+VVD      +      + +  +               ++LMP+R
Sbjct: 532 SPVFALAALSSF-SDKVVD----LSVSEPGKPLLLTAE---------YDPVHRHILMPVR 577

Query: 385 I 385
           +
Sbjct: 578 L 578


>gi|58699454|ref|ZP_00374195.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia
           endosymbiont of Drosophila ananassae]
 gi|58534026|gb|EAL58284.1| DNA polymerase III beta subunit, C-terminal domain [Wolbachia
           endosymbiont of Drosophila ananassae]
          Length = 77

 Score = 80.3 bits (197), Expect = 5e-13,   Method: Composition-based stats.
 Identities = 29/90 (32%), Positives = 45/90 (50%), Gaps = 15/90 (16%)

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +  ++ +   A ES+ V YNE P++I FN +YLL+++  I       ++  F L   N
Sbjct: 2   LTLHSNSQECSDATESIEVDYNEAPIEIGFNSRYLLDVLSCIK------NKCKFSLADGN 55

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           S+  I  +D  S           YV+MPMR
Sbjct: 56  SATIITDEDDSSV---------LYVVMPMR 76


>gi|254192274|ref|ZP_04898763.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur
           52237]
 gi|157987469|gb|EDO95245.1| DNA polymerase III subunit beta [Burkholderia pseudomallei Pasteur
           52237]
          Length = 203

 Score = 79.9 bits (196), Expect = 7e-13,   Method: Composition-based stats.
 Identities = 34/120 (28%), Positives = 60/120 (50%), Gaps = 4/120 (3%)

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA--KM 195
            + ++        ++IRYYLNG+     E++ +L  VATDGHRL V  ++   ++   + 
Sbjct: 7   ASALKAVQLIAPRDDIRYYLNGVMVEAREKETRL--VATDGHRLVVYRIECNNEVPAGES 64

Query: 196 PSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
            SIIVP   +  +     + D+    S    R+  + + + ++   +D  FPNY+ VIP 
Sbjct: 65  ISIIVPNAVIDRLKLSKDAPDAVTFESADAGRMFFSHDDIRVTFTPVDANFPNYRKVIPE 124


>gi|68171371|ref|ZP_00544765.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
 gi|67999196|gb|EAM85852.1| DNA polymerase III, beta chain [Ehrlichia chaffeensis str. Sapulpa]
          Length = 113

 Score = 79.5 bits (195), Expect = 8e-13,   Method: Composition-based stats.
 Identities = 38/109 (34%), Positives = 62/109 (56%), Gaps = 4/109 (3%)

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           +  +T FA++ EE R+ LNG+  H +     LC  ATDGHRL++ ++     +     II
Sbjct: 1   MFGKTKFAISIEESRFNLNGLHVHTSNN--ILCCAATDGHRLSLTKLSQSQNVLSNFGII 58

Query: 200 VPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF 246
           VP+K V EIL+I+S  S +  + +SLS+ +I    +   +  ++ID  F
Sbjct: 59  VPKKTVNEILKIVSHGSGNDLISISLSDRKICFEYKEYILISKVIDSTF 107


>gi|271963839|ref|YP_003338035.1| MerR family transcriptional regulator [Streptosporangium roseum DSM
           43021]
 gi|270507014|gb|ACZ85292.1| putative transcriptional regulator, MerR family [Streptosporangium
           roseum DSM 43021]
          Length = 399

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 48/292 (16%), Positives = 104/292 (35%), Gaps = 62/292 (21%)

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
            + L + + +   A A++E    L  +   + + +++L  VATD +RL++  +   A   
Sbjct: 125 GAELASAIRQVVPATASDEDFPALGCVLVELGDGEVRL--VATDRYRLSIRVLHPAAMHG 182

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
               I+V    + EI    +++++ V V +      L        + L +  FP+Y+  +
Sbjct: 183 DPRRILVRAADLVEIGPW-AARNAEVTVEVDGEAARLRGAGECRVLTLFEDRFPSYREAL 241

Query: 254 PC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI--- 308
                 +  + V+    R A+      S      V +S + D L +TV     G+A+   
Sbjct: 242 AALGPPECRMIVDRLAFRDAL-----FSLGDTSYVTVSTAGDGLAVTVSTAGDGRAVPGG 296

Query: 309 -----------------------------------ESMNVYYNECPMDICFNYKYLLEII 333
                                                +    +  P+ I F+   L+  +
Sbjct: 297 TAEGGSAARAGTGRDDPAATVAAAGDRTVSTASDAVRLGAICSGPPLRIAFDTATLIPAL 356

Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +       V  +V+  + ++   V +R  D+ S            ++MP+ +
Sbjct: 357 EA-----GVGPDVLLEVSTATHPVIVRSADQGSFTT---------LVMPVAL 394



 Score = 40.6 bits (94), Expect = 0.45,   Method: Composition-based stats.
 Identities = 14/72 (19%), Positives = 27/72 (37%), Gaps = 2/72 (2%)

Query: 8   SDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPASVD-VCG 65
           +++   +             P    VL++  DG + + A+    + I    PA++     
Sbjct: 126 AELASAIRQVVPATASDEDFPALGCVLVELGDGEVRLVATDRYRLSIRVLHPAAMHGDPR 185

Query: 66  SITVSAHLLYDI 77
            I V A  L +I
Sbjct: 186 RILVRAADLVEI 197


>gi|159036146|ref|YP_001535399.1| MerR family transcriptional regulator [Salinispora arenicola
           CNS-205]
 gi|157914981|gb|ABV96408.1| transcriptional regulator, MerR family [Salinispora arenicola
           CNS-205]
          Length = 354

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 47/267 (17%), Positives = 97/267 (36%), Gaps = 30/267 (11%)

Query: 123 EEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLA 182
           +E  + +  L+ +VL   ++   FA+ ++     L G+      + +    VATD +R+A
Sbjct: 112 QENPMTTVTLSRAVLAAALDSVRFAVGSDPELPMLAGVLVDAEADGVTF--VATDRYRMA 169

Query: 183 VAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLI 242
           +              ++ P   V  + R    +   V + L    I    +  ++    +
Sbjct: 170 IHREPATVDGPATR-MLAPVSWVDRL-RDQPGRHEPVILHLDSVEIEAAGDGWTIKDTPL 227

Query: 243 DGEFPNYQNVI----PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM- 297
             ++P+Y+  I       + +   V+   L+  V     +   R + V   L+   L + 
Sbjct: 228 AYDYPDYRRAIQARTADGSPRCAPVDAAALQARVGGAPRVVH-RHEGVDHELT--VLAIG 284

Query: 298 TVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSV 357
           T    D+  A E            +  N ++LLE +         + ++V  L      +
Sbjct: 285 TAGGIDVVGAQEWRA----GQDRHVAVNRQFLLEALSAGG-----EGQLVLELAGPIRPL 335

Query: 358 FIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            IR    D          A+ +LMP++
Sbjct: 336 AIRRPADD---------RAYSLLMPVK 353



 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/62 (19%), Positives = 23/62 (37%)

Query: 3   ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVD 62
           +T+ R+ +   L      +     +P+   VL+ A    +   A+          PA+VD
Sbjct: 119 VTLSRAVLAAALDSVRFAVGSDPELPMLAGVLVDAEADGVTFVATDRYRMAIHREPATVD 178

Query: 63  VC 64
             
Sbjct: 179 GP 180


>gi|302529416|ref|ZP_07281758.1| predicted protein [Streptomyces sp. AA4]
 gi|302438311|gb|EFL10127.1| predicted protein [Streptomyces sp. AA4]
          Length = 351

 Score = 79.1 bits (194), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 37/263 (14%), Positives = 87/263 (33%), Gaps = 40/263 (15%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
              S ++   V    VE+   A   +     LNG+   ++   + L   ATD +RL+   
Sbjct: 120 PAPSVQVTGPVFTAAVEQVLTATTQD--LPVLNGVHLEVSPAAIVL--TATDRYRLSTRT 175

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           +      A   +       +   +   + +   + +S+    I    +    + R +  +
Sbjct: 176 LVPAEPSASTWTATADADDLRLAMPW-TRRQHDLHLSVRADEIWFQGDDAVRTCRTLSED 234

Query: 246 FPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           FP+Y+ ++    +      ++   L   ++R           ++L LS+  + +      
Sbjct: 235 FPDYRLMLASLPEVLTRAVISRNALVAGLER------QYTAQIQLDLSATAITV------ 282

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS--DEVVDDEVVFRLDSSNSSVFIRG 361
               IE +       P+ + F        +  +       V  +V+  +   +  V +R 
Sbjct: 283 ---GIERIPADVTGPPITLSF-------AVSTLHPAISTAVGPDVMLDVAGPHLPVVVRS 332

Query: 362 KDKDSKNNKDNKVNAFYVLMPMR 384
            D               + MP++
Sbjct: 333 ADDGDLTT---------LAMPVK 346


>gi|147538|gb|AAA24510.1| DNA polymerase III beta subunit [Escherichia coli]
          Length = 70

 Score = 78.7 bits (193), Expect = 1e-12,   Method: Composition-based stats.
 Identities = 25/84 (29%), Positives = 41/84 (48%), Gaps = 14/84 (16%)

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
           P+  +A E ++V Y+   M+I FN  Y+L++++ +       + V   L  S SSV I  
Sbjct: 1   PEQEEAEEILDVTYSGAEMEIGFNVSYVLDVLNALKC-----ENVRMMLTDSVSSVQIED 55

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
                        +A YV+MPMR+
Sbjct: 56  A---------ASQSAAYVVMPMRL 70


>gi|307069625|ref|YP_003878102.1| DNA polymerase III subunit beta [Candidatus Zinderia insecticola
           CARI]
 gi|306482885|gb|ADM89756.1| DNA polymerase III, beta subunit [Candidatus Zinderia insecticola
           CARI]
          Length = 366

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 71/342 (20%), Positives = 151/342 (44%), Gaps = 24/342 (7%)

Query: 46  ASGPEIEITGAIPASVD-VCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHG 104
            S  EI++   I    +       + +     I+  L      ++     +   + +   
Sbjct: 47  TSNNEIQLEFKINIKKNYDNIKFLIDSEKFIKIISYL---KNSNYIYIYIIKNIIILKSK 103

Query: 105 DSNFYLQSFPESEFPSTKEEEYVYSFELASSVL-KNLVERTHFAMATEEIRYYLNGIFFH 163
             N  L+S     FP   +               K + +  + +++    +Y LNG+  +
Sbjct: 104 KYNTILKSQKFKNFPIFNKIIKKKICFKVKEYKIKKIFKILYNSISNINAKYSLNGLLIN 163

Query: 164 INEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSL 223
           I ++  K+  ++TDG RL+   ++I         II+P+K + EI++IL+ +   +K+ +
Sbjct: 164 IEKK--KISFLSTDGFRLSYYFLNIKNNY--KTKIIIPKKNIFEIIKILNYEKKKIKIII 219

Query: 224 SESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRI 283
            ++ I   I  +    RLI  +F NY+ +I      ++++N   +   + ++S++   +I
Sbjct: 220 LKNYIIFKIFKIKFISRLIKEDFINYKYIINKKYRYKIKINRKKILNIIKKISLIEKDKI 279

Query: 284 QAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVD 343
           + +K ++  + L ++  N     + E +N+ Y    ++I  N KYLLEI+ NI      +
Sbjct: 280 KIIKFNIKRNNLKISSFNKIEEISNEKININYKNKNININLNIKYLLEILTNIK-----N 334

Query: 344 DEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
             ++F+  +   S+ I+           NK N  Y++MP+ I
Sbjct: 335 KHIIFKF-NKKKSILIKI---------YNKKNFKYIIMPIEI 366


>gi|302542965|ref|ZP_07295307.1| putative transcriptional regulator [Streptomyces hygroscopicus ATCC
           53653]
 gi|302460583|gb|EFL23676.1| putative transcriptional regulator [Streptomyces himastatinicus
           ATCC 53653]
          Length = 354

 Score = 77.6 bits (190), Expect = 3e-12,   Method: Composition-based stats.
 Identities = 46/270 (17%), Positives = 94/270 (34%), Gaps = 35/270 (12%)

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMAT---EEIRYYLNGIFFHINEEDLKLCAVAT 176
                       +  + L   V +   A+A     E    L  +   + E++L+L  VAT
Sbjct: 113 ELPGGARSGQARVGGAELAGAVRQVGSAVAVGTVREEFPVLGRVLIELAEQELRL--VAT 170

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
           D +RL+V  +  +A   +   + V  + + ++          V + +    + +      
Sbjct: 171 DRYRLSVRALRPLAIGGEPCGLTVGIEELRDLAGWARGLPE-VAIEVDAGEVRVRGGGEE 229

Query: 237 MSVRLIDGEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            ++ + D  FP Y+ V+         +  +   L  AV             V L      
Sbjct: 230 RALSVADEAFPAYRMVLDGLADARHRVITDRAALCTAVAE-----RGGDGPVVLRTGDGV 284

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
           L +     + G+   +++      P+ I F+   LL  ++       V  +V+  + S  
Sbjct: 285 LTV-----EGGR---TLSALCTGSPLRIAFDPAVLLPALEA-----GVGPDVLLEVASGG 331

Query: 355 SSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             V +R  D+ S            ++MP+R
Sbjct: 332 EPVVVRSADQGSFTT---------LVMPVR 352


>gi|304360715|ref|YP_003856846.1| putative DNA polymerase III beta subunit [Clostridium phage
           phiCTP1]
 gi|302495574|gb|ADL40354.1| putative DNA polymerase III beta subunit [Clostridium phage
           phiCTP1]
          Length = 351

 Score = 77.2 bits (189), Expect = 4e-12,   Method: Composition-based stats.
 Identities = 53/349 (15%), Positives = 134/349 (38%), Gaps = 35/349 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M+I ++ + + ++   A + +      P++ ++ L   +G+  + ++     +T +   +
Sbjct: 1   MEIKIKTAVLKKITAIAEKGVGADKNQPITSYLHLYTKEGIFYMDSTDGYRFLTVSSKLA 60

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
               G   V A     +V K           + EL     I  G+  + +    E     
Sbjct: 61  ECTDGDCIVLAEPFIKLVNK-----TTKEDVKLELLDTSLIFKGNGTYKIPILDEEFLSY 115

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMA-TEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
             E       ++    +KN++     ++A  +E    L G  F           VATD  
Sbjct: 116 --EFTAGTKEDINIDKIKNVLAIGKNSIAPDDESFGALRGYLFGDK-------VVATDSI 166

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSV 239
           ++ +    +V +       ++  +++  ++ ++  +  +  +  +E +I +  +++ +  
Sbjct: 167 KMCLVNTKLVGKP------MLVNQSMARLINVIPEEKGT--IQFAEGKILIETDTVKLFG 218

Query: 240 RLIDG--EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSV-RIQAVKLSLSSDKLC 296
             ++   ++P+   V+         +N   +   +DR+ I  S     AVKL   ++ + 
Sbjct: 219 AALNEIDQYPDLSVVLDNEFSSNCLLNKNVMLDILDRLDIFVSPYDKNAVKLQFGTNGIT 278

Query: 297 MTVDNPDMGKAIESMNVYYNE----CPMDICFNYKYLLEIIDNISSDEV 341
           +T  N   G  +E +   Y+        +I  +   L +II+ + +D  
Sbjct: 279 VTEVN---GDGVEKI--AYSGSTDFKEFEIPLDITMLKDIINAVQADTF 322


>gi|75992444|dbj|BAE45110.1| putative DNA polymerase III beta subunit [Terrabacter sp. DBF63]
          Length = 373

 Score = 76.8 bits (188), Expect = 5e-12,   Method: Composition-based stats.
 Identities = 63/393 (16%), Positives = 136/393 (34%), Gaps = 53/393 (13%)

Query: 9   DILELLGHACRIIER-KNTIPVSCHVLLQAN-DGLLEIKASGPEIEITGAIPASVDVCGS 66
           D+LE L     ++   K+       VLL    DG   +  S  E+ +   +P+S      
Sbjct: 16  DLLEALAPLRPVLSTAKHAPAPLRSVLLSVEMDGATSLSCSTGEVSMQVGLPSSQTS--- 72

Query: 67  ITVSAHLLYD--IVRKLQDGAQISFFKENELGTEVNISHGDSNF-------YLQSFPESE 117
            T +     D   +RK             ++   + ++   +         Y+    +  
Sbjct: 73  -TAAGQAWIDHTALRKAATALAARRGAGAQVDLSLTVTADGARLSDGTRVMYIDVLDDVH 131

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
            P T     V      + + + +      A   +     +  +    +        VATD
Sbjct: 132 LPPTMAPAAVTWVSDRAELAERVAAVASAAATPDCNVPIITAMRLATDG------VVATD 185

Query: 178 GHRLAVAEVDIVAQIAK-MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS 236
            +RL  A +     +    P   V  K +  +         +V + +   R+ ++ ++++
Sbjct: 186 KYRLTKAPLPGTGDLEPAQPPAHVFAKVIKTL------TGDTVSLGVDADRLTISTDTVT 239

Query: 237 MSVRLIDGEFPN-YQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
            ++R + G++P    ++    +   +RV+ T L   +          ++A K++L++   
Sbjct: 240 ATLRGLQGDYPRGVTSIGEFDDATTVRVDRTGLLDLIKP-----HQNVRAAKVTLATIGQ 294

Query: 296 CMTVDNPDMGKAIESMNVYYNECPMDI---CFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
            + V   D G+A+ +  V     P  I     N  YL + +  +        EV   + S
Sbjct: 295 TIDVTVDDGGRALVTAQVPACTPPEKIEPVTLNAAYLADALRAVGGA-----EVSIHVQS 349

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +   V + G    +            V+ P+R+
Sbjct: 350 TLRPVKVAGDGDITA-----------VVQPIRV 371


>gi|218291396|ref|ZP_03495339.1| DNA polymerase III beta chain [Alicyclobacillus acidocaldarius
           LAA1]
 gi|218238751|gb|EED05967.1| DNA polymerase III beta chain [Alicyclobacillus acidocaldarius
           LAA1]
          Length = 121

 Score = 76.4 bits (187), Expect = 7e-12,   Method: Composition-based stats.
 Identities = 20/95 (21%), Positives = 42/95 (44%), Gaps = 1/95 (1%)

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMN 312
           +P     E  +    L +A++RV+I++      V L +    L +T  + + G A E + 
Sbjct: 1   MPREFTAECSIERRRLEEAIERVTILAENERHTVSLYVKDGVLELTSRSAERGHAREEVP 60

Query: 313 -VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
              +    + +  N +Y+L+ +  + S + V   V
Sbjct: 61  LTAFKGDEVKVALNARYVLDTLSAVESSKTVRMLV 95


>gi|91176174|dbj|BAE93152.1| putative DNA polymerase III beta subunit [Microcystis aeruginosa]
          Length = 76

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 22/87 (25%), Positives = 41/87 (47%), Gaps = 14/87 (16%)

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V++PD+G A ESM         DI FN KYL++ +  + +++     +  +L++S   V 
Sbjct: 2   VESPDLGSAKESMAAEIQGESGDIAFNVKYLMDGLKALPNND-----IQMQLNASTQPVI 56

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                          +   Y++MP++I
Sbjct: 57  FTP---------LGGLKMTYLVMPVQI 74


>gi|19423269|gb|AAL88454.1|AF480365_2 DNA polymerase III [Streptomyces avermitilis]
          Length = 52

 Score = 74.1 bits (181), Expect = 3e-11,   Method: Composition-based stats.
 Identities = 18/52 (34%), Positives = 27/52 (51%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE 52
          MKI VER  + E +  A R +  +   PV   +LL+A DG L + +   E+ 
Sbjct: 1  MKIRVERDVLAEAVAWAARSLPARPPAPVLAGLLLRAEDGALSLSSFDYEVS 52


>gi|313621674|gb|EFR92459.1| DNA polymerase III, beta subunit [Listeria innocua FSL S4-378]
          Length = 65

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 29/64 (45%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          MK  +ER  +++ +    R I  + TIP+   + +  ND  + +  S  +I I   IP  
Sbjct: 1  MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDEGVTLTGSDSDISIEAFIPLI 60

Query: 61 VDVC 64
           +  
Sbjct: 61 ENDE 64


>gi|291333915|gb|ADD93595.1| hypothetical protein [uncultured marine bacterium
           MedDCM-OCT-S04-C385]
          Length = 84

 Score = 73.3 bits (179), Expect = 6e-11,   Method: Composition-based stats.
 Identities = 26/98 (26%), Positives = 44/98 (44%), Gaps = 14/98 (14%)

Query: 288 LSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVV 347
           +SL+ D L +  +NP+   A E + V Y+   ++I FN  YL E +  I      D    
Sbjct: 1   MSLNKDLLKIEANNPEKESAEEEIKVDYSGPELEIGFNISYLQESLTTIK-----DLSAE 55

Query: 348 FRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
                  SS  ++ K+ +         +  +V+MPMR+
Sbjct: 56  IVFFGQESSCIVKNKENE---------DLIHVIMPMRL 84


>gi|229065228|ref|ZP_04200513.1| DNA polymerase III, beta subunit [Bacillus cereus AH603]
 gi|228716055|gb|EEL67785.1| DNA polymerase III, beta subunit [Bacillus cereus AH603]
          Length = 178

 Score = 72.2 bits (176), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 28/181 (15%), Positives = 74/181 (40%), Gaps = 25/181 (13%)

Query: 205 VGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVN 264
           V   L++ + + +     +S++++ +  ES+    RL+ G +P+   ++P     +   N
Sbjct: 23  VKTALKLFNRETNLQLKLISDTQLLIRGESIIYQPRLLAGTYPDTARMVPGQFKIK---N 79

Query: 265 CTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICF 324
                 A   + +++S            + + +   N  +G A   +          +  
Sbjct: 80  TLEQLSAFSSLIVLTSE---------GKESIHLKPQNSQVGTASVEIPCNQV-EAFTLAC 129

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           N +YLL+ +  ISS++     +  ++ S+   + + G +    +N         +++P+R
Sbjct: 130 NVEYLLQALQTISSEK-----IAIKMISNQRPIVVVGAEDTIHSN-------LQLILPVR 177

Query: 385 I 385
           +
Sbjct: 178 V 178


>gi|307325259|ref|ZP_07604462.1| transcriptional regulator, MerR family [Streptomyces violaceusniger
           Tu 4113]
 gi|306889063|gb|EFN20046.1| transcriptional regulator, MerR family [Streptomyces violaceusniger
           Tu 4113]
          Length = 350

 Score = 71.8 bits (175), Expect = 1e-10,   Method: Composition-based stats.
 Identities = 52/279 (18%), Positives = 95/279 (34%), Gaps = 50/279 (17%)

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  +   +    L   V  + VE+   A A E     L G+      E + L   ATD +
Sbjct: 103 SLVDTPSLPITALKGPVFADAVEQVLTATAHEPEMPVLVGLRLEATPEAVTL--TATDRY 160

Query: 180 RLAVAEVDIVAQIAKMPSIIVP----RKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           RL+   +          +  V     R A+ EI R      + V+V  +   I L +   
Sbjct: 161 RLSTRTLVPGEPATSAWAATVHGDELRAALTEIRRS-----TLVRVEATRHGIWLRLADR 215

Query: 236 S-MSVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
                RL+  EFP+Y+ ++      +  + V+   L +A++          + V L L+ 
Sbjct: 216 EDQHCRLLTEEFPDYRLMLASLPEVNTRVTVSKDLLLRALE------EHPGERVALRLAP 269

Query: 293 DKLCMTVDNPDMGKAIES--MNVYYNECPMDICFNYKYLLEIIDNISS-----DEVVDDE 345
             + +       G A     +        + I F           +++        +  E
Sbjct: 270 HGMNILP----AGDAHPDVPIPATVTGQDLRISF----------QLTTLYPAVSTAIGPE 315

Query: 346 VVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           V+  L  ++  V IR  D+              + MP++
Sbjct: 316 VMLDLRGADQPVTIRSADRGDLTT---------LAMPIK 345



 Score = 38.7 bits (89), Expect = 1.6,   Method: Composition-based stats.
 Identities = 6/53 (11%), Positives = 17/53 (32%), Gaps = 1/53 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPAS 60
              + +         +  +PV   + L+A    + + A+    +     +P  
Sbjct: 119 VFADAVEQVLTATAHEPEMPVLVGLRLEATPEAVTLTATDRYRLSTRTLVPGE 171


>gi|257055382|ref|YP_003133214.1| putative transcriptional regulator [Saccharomonospora viridis DSM
           43017]
 gi|256585254|gb|ACU96387.1| predicted transcriptional regulator [Saccharomonospora viridis DSM
           43017]
          Length = 346

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 49/266 (18%), Positives = 98/266 (36%), Gaps = 47/266 (17%)

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            +  + L + + +   A+A  E    L  +    +  DL+L  VATD +RL V E+   A
Sbjct: 114 TVGGAELASAIRQVTPAVADSEEFPQLRCVLLECSASDLRL--VATDRYRLTVRELVPHA 171

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSM-----SVRLI--D 243
                   +VP  A+ +        D+ V++ + ++  HL     +      +V L   D
Sbjct: 172 VCGAPARALVPADALVDAAPWALRHDA-VRLIIEDTGAHLVAMDTASDEASDTVPLPTHD 230

Query: 244 GEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC---MT 298
           G++P+Y+ ++         +  + + L +A+      +S     V L    D L    +T
Sbjct: 231 GDYPDYRALLDALEPFTCRVVTDRSALLEALT-----ASRDPSYVPLHADGDTLHVGGVT 285

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
           V       A  + +       ++                    V  +V+  + + +  V 
Sbjct: 286 VPAVCSRTARLAFDAAVLGPAVEAG------------------VGPDVLLEITADDRPVV 327

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPMR 384
           +R  D+ S            ++MP+R
Sbjct: 328 VRSADQGSFTT---------LVMPVR 344



 Score = 39.4 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 14/75 (18%), Positives = 26/75 (34%), Gaps = 2/75 (2%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIP-ASV 61
           TV  +++   +      +      P    VLL+ +   L + A+    + +   +P A  
Sbjct: 114 TVGGAELASAIRQVTPAVADSEEFPQLRCVLLECSASDLRLVATDRYRLTVRELVPHAVC 173

Query: 62  DVCGSITVSAHLLYD 76
                  V A  L D
Sbjct: 174 GAPARALVPADALVD 188


>gi|62177289|gb|AAX70928.1| DNA polymerase III beta chain [Mycoplasma hominis ATCC 23114]
          Length = 105

 Score = 71.8 bits (175), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 25/104 (24%), Positives = 48/104 (46%), Gaps = 5/104 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEI----EITGA 56
           MK+ +++  +   +    + ++    +PV   +L+QA D  + +  S  E     EI  +
Sbjct: 1   MKLKIDKLLLDNAIERVSKSVDANPFLPVMKGILIQAEDNKITLIGSNGETSIKHEIETS 60

Query: 57  IPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVN 100
           I A +++ G + V   L  +I++KL DG  +     N L    N
Sbjct: 61  IDAQIELPGIVLVELSLFKNIIKKL-DGEIVLEVVNNILKISTN 103


>gi|58699676|ref|ZP_00374350.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
          Drosophila ananassae]
 gi|58533805|gb|EAL58130.1| DNA polymerase III, beta subunit [Wolbachia endosymbiont of
          Drosophila ananassae]
          Length = 86

 Score = 71.4 bits (174), Expect = 2e-10,   Method: Composition-based stats.
 Identities = 16/64 (25%), Positives = 36/64 (56%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
          M+ +V R+ +L  L     ++ER+N+I V   + ++A  G +++ A+  +I +  ++ A+
Sbjct: 21 MRFSVSRTSLLNTLSRVSGVVERRNSIDVLACINIKAQHGSIKLMATDLDISMFASLAAT 80

Query: 61 VDVC 64
          V   
Sbjct: 81 VLTE 84


>gi|118796|sp|P24701|DPO3B_ACTPL RecName: Full=DNA polymerase III subunit beta
 gi|38952|emb|CAA45172.1| DnaN [Actinobacillus pleuropneumoniae]
          Length = 64

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 14/78 (17%)

Query: 308 IESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSK 367
            E ++V Y    M++ FN  YLL++++ +       + V F L  ++SS  I   D  + 
Sbjct: 1   EEIIDVAYQSPEMEVGFNVSYLLDVLNTLKC-----ERVRFNLVDASSSCLIEDCDNSTA 55

Query: 368 NNKDNKVNAFYVLMPMRI 385
                     YV+MPMR+
Sbjct: 56  E---------YVIMPMRL 64


>gi|291437274|ref|ZP_06576664.1| chromosome segregation ATPase [Streptomyces ghanaensis ATCC 14672]
 gi|291340169|gb|EFE67125.1| chromosome segregation ATPase [Streptomyces ghanaensis ATCC 14672]
          Length = 582

 Score = 71.0 bits (173), Expect = 3e-10,   Method: Composition-based stats.
 Identities = 47/316 (14%), Positives = 116/316 (36%), Gaps = 39/316 (12%)

Query: 78  VRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137
           +R+L+D       +E E    V          +++  +      K+       E+ +S L
Sbjct: 296 LRQLRDDYHPEVREEIEHQIAVAPKKPRRKVPIRTIED------KQVRSPKWVEVPASSL 349

Query: 138 KNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPS 197
            N  +     ++ +      + + +  + E++KL   ATD +R+ +  + I+ +     +
Sbjct: 350 VNASQVAATFVSRDASYEIYSYVHYTFSNEEMKLW--ATDRYRIDIWRLPILGK-GDDFA 406

Query: 198 IIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEF---PNYQNVIP 254
             +P      +     +    V++ + ++    +     +S+R    +F   P+Y++++ 
Sbjct: 407 TSLPGDLAFSLKAF--NGKKKVRMEVGDTVCEFDCNGKLLSIR--SAKFDNLPDYESMMG 462

Query: 255 CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLS---SDKLCMTVDNPDMGKAI--E 309
                 + V    L  A++R    ++ R   + L L+    D L +  +    G+    E
Sbjct: 463 KDVTTSIHVARIPLLDALERTLAATNARNSPIILDLTGSAGDALELYFE----GELFPGE 518

Query: 310 SMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
           S+ V      +               ++ +       V    +   S+ +   +K     
Sbjct: 519 SVPVKLAGERVK--------------LAFNANFAIAAVSSFSNGTISISVTNPNKPVLIT 564

Query: 370 KDNKVNAFYVLMPMRI 385
            D +    ++LMP+R+
Sbjct: 565 SDGEPEHRHILMPVRL 580


>gi|302536583|ref|ZP_07288925.1| DNA polymerase III, beta subunit [Streptomyces sp. C]
 gi|302445478|gb|EFL17294.1| DNA polymerase III, beta subunit [Streptomyces sp. C]
          Length = 373

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 47/264 (17%), Positives = 89/264 (33%), Gaps = 30/264 (11%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEV 186
                +++  L   ++   FA +T+     L G+ F  + E   L  VATD +RLAV+  
Sbjct: 133 AVRLTVSAPGLAAALDAVRFAASTDPELPMLGGVLF--DAEGGTLRVVATDRYRLAVSAT 190

Query: 187 DIVAQ-----IAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRL 241
            +               +VP   + + +R L   + S ++ +   R+ L         R 
Sbjct: 191 AVTGAGTGEYDGSRVQAVVPS-PLVDAMRALLGAEGSAELRVEGDRVVLEAGERQAGGRC 249

Query: 242 IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
               FP+Y+ +      +   V+    R+A+    + S VR Q      + D   + V +
Sbjct: 250 GGTGFPDYRRLSRLPAGRRATVDVPAFREALRGGPVRSQVREQD---GAAYDVSVLEVTD 306

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
                  E            +  N           +      D +V    +    + I  
Sbjct: 307 GGTVSVREH---ASPGD--RVGVN-----RAFLLEALAAADRDRLVLEAGTGPRPLTISR 356

Query: 362 KDKDSKNNKDNKVNAFYVLMPMRI 385
            D +   +         +LMP+R+
Sbjct: 357 GDDEETYS---------LLMPVRV 371



 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 19/87 (21%), Positives = 29/87 (33%), Gaps = 8/87 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG---PEIEITGAIP 58
           ++TV    +   L            +P+   VL  A  G L + A+      +  T    
Sbjct: 135 RLTVSAPGLAAALDAVRFAASTDPELPMLGGVLFDAEGGTLRVVATDRYRLAVSATAVTG 194

Query: 59  ASVDV-CGS---ITVSAHLLYDIVRKL 81
           A      GS     V +  L D +R L
Sbjct: 195 AGTGEYDGSRVQAVVPSP-LVDAMRAL 220


>gi|291520349|emb|CBK75570.1| DNA polymerase sliding clamp subunit (PCNA homolog) [Butyrivibrio
           fibrisolvens 16/4]
          Length = 81

 Score = 69.1 bits (168), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 16/85 (18%), Positives = 39/85 (45%), Gaps = 15/85 (17%)

Query: 299 VDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             +  +G   E +++      + I FN K++++ +  I      D+E+   + ++ S  F
Sbjct: 4   SISSHIGSMNEDIDIVKEGKDIMIGFNPKFVMDALKVID-----DEEINLYMLNAKSPCF 58

Query: 359 IRGKDKDSKNNKDNKVNAFYVLMPM 383
           I          KD++ +  Y+++P+
Sbjct: 59  I----------KDDEGSFIYIVLPV 73


>gi|121610651|ref|YP_998458.1| DNA polymerase sliding clamp subunit-like protein
           [Verminephrobacter eiseniae EF01-2]
 gi|121555291|gb|ABM59440.1| DNA polymerase sliding clamp subunit-like protein
           [Verminephrobacter eiseniae EF01-2]
          Length = 366

 Score = 68.7 bits (167), Expect = 1e-09,   Method: Composition-based stats.
 Identities = 56/321 (17%), Positives = 114/321 (35%), Gaps = 35/321 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MK T+    +   +    + ++            ++   G L + A    +    ++   
Sbjct: 1   MKTTI--GALKRAIKKVLKAVDC-------ASCAIKVESGALSVIA----MSAQASVKIL 47

Query: 61  VDVCGSI-----TVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPE 115
           V   G+       + A     I+  + D  + +     +      +  G +   L     
Sbjct: 48  VPAQGNAGDCCAVIGAKQAGAILGSVLDCTECTIEAIEQGA---QLVFGGARIKLMRPAG 104

Query: 116 SE-----FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           +      F +  + +    FE +      L+       A  ++RYYL G+  H   +   
Sbjct: 105 ANDGIDLFDAPADGDKRVVFETSGRDFAGLMAGPVQYAAKSDVRYYLVGV--HATCDAGA 162

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSES---R 227
           L    ++G  L  A   I A  A M   IVP  A   I  +  + +      L +    R
Sbjct: 163 LRLTGSNGFMLCTAAGAIDAS-ASMVDCIVPHTAADSIGAVFGADERITVCQLGKDANLR 221

Query: 228 IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK-ELRVNCTNLRQAVDRVSIMSSVRIQAV 286
           + ++ E++  +  L+ G+FP+++ V+P      + +++   L  AV RV   S      V
Sbjct: 222 LLMHSETIQWNTALVAGKFPDFRRVMPGPKRIGQCKLSRDALSAAVSRVLAASGDVF--V 279

Query: 287 KLSLSSDKLCMTVDNPDMGKA 307
            L L+   L +   + +  + 
Sbjct: 280 ALHLTRKGLEVRSVDGEQCEV 300


>gi|169825460|ref|YP_001695635.1| hypothetical protein Bsph_p046 [Lysinibacillus sphaericus C3-41]
 gi|168994737|gb|ACA42276.1| hypothetical protein Bsph_p046 [Lysinibacillus sphaericus C3-41]
          Length = 393

 Score = 68.3 bits (166), Expect = 2e-09,   Method: Composition-based stats.
 Identities = 51/299 (17%), Positives = 113/299 (37%), Gaps = 26/299 (8%)

Query: 3   ITVERSDILELLGHACRIIER---KNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
             +   D+  ++    +   R   KNT+     + + A+   + +K  G E+ ++  I A
Sbjct: 17  FRINSKDLKIVVERVMKSARRAKLKNTV-----IDVIASGTTIILKFGGSELFVSQKIEA 71

Query: 60  SVDVC--GSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESE 117
           ++      S TV    L   V  L +   I+  +++    ++    G S+       +++
Sbjct: 72  NITKELNFSTTVMELNLK--VSALPNNELITVEEKD---NKIYFKWGRSSLVRVERVDNQ 126

Query: 118 FPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI-----RYYLNGIFFHINEEDLKLC 172
                 E    S+E + + ++ +        A            L GI+    +E  +L 
Sbjct: 127 CIEMSFEGQGESYEWSYNSIQRITRNMTSFTAINGTAEAKKIPQLAGIYIQYKKEYTELH 186

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             A+D  + A++ V+   +    P+ I P +    +  +LS        S  +S +    
Sbjct: 187 --ASDSKK-AISMVETDIKWFDEPAAI-PTETWFAMYELLSEDSIINISSNGKSLVKFES 242

Query: 233 ESLSMSVRLIDGEFPNYQNVI--PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           ES  +  R+I G +P+  ++   P        ++   L +A  R   + +     ++L+
Sbjct: 243 ESTVIISRIIIGTYPDLSSIYVQPEQTATRWTIDRLELLEATRRARHLITTTGSNIELN 301


>gi|303245428|ref|ZP_07331712.1| DNA polymerase III beta chain [Desulfovibrio fructosovorans JJ]
 gi|302493277|gb|EFL53139.1| DNA polymerase III beta chain [Desulfovibrio fructosovorans JJ]
          Length = 393

 Score = 68.0 bits (165), Expect = 3e-09,   Method: Composition-based stats.
 Identities = 40/284 (14%), Positives = 91/284 (32%), Gaps = 20/284 (7%)

Query: 24  KNTIPVSCHVLLQA---NDGLLEIKASGPEIEITGAI-PASVDVCGSITVSAHLLYDIVR 79
           KNT  ++ +V   A     G + + A+   +++   +  A         + A    D+V 
Sbjct: 30  KNT--INGNVWFDASASTHGRITLTATDGTLDVHCRLTAAPGFDPFRCGLPARKSLDLVS 87

Query: 80  KLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKN 139
           +L     I     +     + +  G +   L      ++      E +            
Sbjct: 88  RLPAAPIIL--SPDPDAGMLRLRCGRTRASLPMT---DWRYAPTLEPLPETTHPLDPAPL 142

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
                  A +  +    L+ + F    E   L   A DGH+    +V            +
Sbjct: 143 AAAIAAAAPSAGDEEEGLDQVRFTPFGEAGALRVEALDGHQFVRVDVPGQGGQQGWWRAV 202

Query: 200 VPRKAVGEILRILSSK---DSSVKVSLSESRIHLN--IESLSMSVRLIDGEFPNYQNVIP 254
                V E  R+       +++  +++S+ R+     +   S+ VR   G +     ++ 
Sbjct: 203 PDAFGV-EARRMGPGAKWIETARAMAVSDKRLFFVDAVGWWSLPVRR--GVWVETDRLMA 259

Query: 255 C-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCM 297
              +   + +       A +R++I      + + L+L      +
Sbjct: 260 KVEDVYAVDIRAQVFADAAERLAIYLPEGSKNMCLTLGQGDASL 303


>gi|300865073|ref|ZP_07109899.1| hypothetical protein OSCI_1460025 [Oscillatoria sp. PCC 6506]
 gi|300336937|emb|CBN55049.1| hypothetical protein OSCI_1460025 [Oscillatoria sp. PCC 6506]
          Length = 121

 Score = 67.2 bits (163), Expect = 4e-09,   Method: Composition-based stats.
 Identities = 23/126 (18%), Positives = 58/126 (46%), Gaps = 11/126 (8%)

Query: 261 LRVNCTNLRQAVDRVSIMSSVRIQA--VKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC 318
           + +      +A++R+++++  + +   ++++  + ++ +++   + G  +E M  + N  
Sbjct: 1   MTLEKAPFIKALERIAVLADKKEKTLSIRINSEAQQVSLSLF-REFGNGLEQMAAHVNSD 59

Query: 319 P-MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAF 377
               I FN KYLLE    ISS      +V   L   +    +       ++  +  ++  
Sbjct: 60  DNFSISFNIKYLLEGAKAISSS-----QVQMHLTQHDGPAILVPFGN--RDKPNILMDTK 112

Query: 378 YVLMPM 383
           Y+LMP+
Sbjct: 113 YLLMPI 118


>gi|296128245|ref|YP_003635495.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM
           20109]
 gi|296020060|gb|ADG73296.1| transcriptional regulator, MerR family [Cellulomonas flavigena DSM
           20109]
          Length = 327

 Score = 67.2 bits (163), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 37/235 (15%), Positives = 79/235 (33%), Gaps = 45/235 (19%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEI 208
             +     L G+  H++   L+L  V  D  RLAVA V +         ++ P   + ++
Sbjct: 133 GDDPAWPGLAGVLMHLDATSLRL--VGCDRSRLAVATVPVRRPSGAEVRVVAPLAFLDDL 190

Query: 209 LRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNL 268
                  D  V +      +             +D  +P+YQ ++     + + V   +L
Sbjct: 191 ASAELPADGPVVLGSRTLEVLGRHGEP------LDAAYPDYQQLLRSGGSRHVTVATVDL 244

Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
            +AVD          + V + L  D++ +    PD                  + F+  +
Sbjct: 245 VEAVDGA-------DEIVVVRLDGDRVALGAPGPDDA----------------LGFSRTF 281

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           LL+ +    +     + V   L+   + + +    +              ++MP+
Sbjct: 282 LLDAVRAARA-----EHVALALEDERAVLSVSPAGRPGDVG---------LVMPV 322


>gi|218134378|ref|ZP_03463182.1| hypothetical protein BACPEC_02272 [Bacteroides pectinophilus ATCC
           43243]
 gi|217989763|gb|EEC55774.1| hypothetical protein BACPEC_02272 [Bacteroides pectinophilus ATCC
           43243]
          Length = 77

 Score = 66.8 bits (162), Expect = 5e-09,   Method: Composition-based stats.
 Identities = 19/82 (23%), Positives = 36/82 (43%), Gaps = 15/82 (18%)

Query: 302 PDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRG 361
             +G   E++ V      + I FN K+L++ +  I      D+ V   L +  +  FIR 
Sbjct: 7   SSIGSLNENVAVEKEGKDIMIGFNPKFLMDALGKID-----DENVDIYLLNPKAPCFIRD 61

Query: 362 KDKDSKNNKDNKVNAFYVLMPM 383
           K++          N  Y+++P+
Sbjct: 62  KEE----------NYIYLILPV 73


>gi|281356314|ref|ZP_06242806.1| hypothetical protein Vvad_PD1685 [Victivallis vadensis ATCC
           BAA-548]
 gi|281317006|gb|EFB01028.1| hypothetical protein Vvad_PD1685 [Victivallis vadensis ATCC
           BAA-548]
          Length = 424

 Score = 66.4 bits (161), Expect = 8e-09,   Method: Composition-based stats.
 Identities = 42/302 (13%), Positives = 97/302 (32%), Gaps = 36/302 (11%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           MKI   +S + E L    +++ + + + +   V        + + A+     +T  +   
Sbjct: 1   MKIR--KSVLQEALKVLGKVVSQTSPVEIQRSVRFLGVGAQVWLTATDGVESVTIEVAGD 58

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                   V    L +++R                G EV ++    N          +P 
Sbjct: 59  AGEMEDFAVDYKALRELIRS-------------TRGGEVEVTGKQLN----------WPE 95

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
            +            S    L+      +   E R  L GI    +         AT+G  
Sbjct: 96  MEAVPDDAVTVELPSDFGKLLALAAPVVDLREARLALRGINLSRDG------VTATNGKE 149

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           L    +++   +     + +P      I R   +    +    +E    + I       +
Sbjct: 150 L----LNLPCPLKIPEDMTLPFPLALLIARPEGAGTLHIWRCRNERLFRIVIGGFQWQGK 205

Query: 241 LIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSS-VRIQAVKLSLSSDKLCMTV 299
           ++ G FP+++ V+P     + R+      + +  +  +       A++L++    + +  
Sbjct: 206 VLPGNFPDWKQVMPADKTLDYRIEIYEPERVITFLKAVPDCPPFHAIELNVVPGGVTVIP 265

Query: 300 DN 301
           +N
Sbjct: 266 NN 267


>gi|327179744|gb|AEA30292.1| putative DNA polymerase III [Streptomyces sp. Acta 2897]
          Length = 84

 Score = 66.0 bits (160), Expect = 1e-08,   Method: Composition-based stats.
 Identities = 21/84 (25%), Positives = 36/84 (42%), Gaps = 2/84 (2%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGL--LEIKASGPEIEITGAIP 58
          M+  +ERS + + +  A R++  ++ +PV   +LL+       L I     E      + 
Sbjct: 1  MEFRIERSALTDAVSWAARVLPVRSPVPVLGGLLLETGGEGGPLRISGLDYEASARIDVD 60

Query: 59 ASVDVCGSITVSAHLLYDIVRKLQ 82
          A V   G + V    L DI + L 
Sbjct: 61 AGVTRLGKVLVMGRRLLDICKVLP 84


>gi|291333917|gb|ADD93597.1| hypothetical protein [uncultured marine bacterium
          MedDCM-OCT-S04-C385]
          Length = 74

 Score = 65.3 bits (158), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 16/59 (27%), Positives = 32/59 (54%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPA 59
          M+  + ++D++E    A  + E++ +IP+  +VL+ A    ++I A+  EIE    I  
Sbjct: 1  MEFNINKNDLVEPALLASNVSEKRQSIPILSNVLISAAKNSIKITATDLEIEYKTTIEG 59


>gi|213422866|ref|ZP_03355900.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E01-6750]
          Length = 59

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 28/62 (45%), Positives = 39/62 (62%), Gaps = 3/62 (4%)

Query: 155 YYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS 214
           YYLNG+ F     +L+   VATDGHRLAV  + + A +    S+IVPRK V E++R+L  
Sbjct: 1   YYLNGMLFETEGSELR--TVATDGHRLAVCSMPLEASLP-SHSVIVPRKGVIELMRMLDG 57

Query: 215 KD 216
            +
Sbjct: 58  GE 59


>gi|330469507|ref|YP_004407250.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
 gi|328812478|gb|AEB46650.1| DNA polymerase III subunit beta [Verrucosispora maris AB-18-032]
          Length = 396

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 32/145 (22%), Positives = 64/145 (44%), Gaps = 19/145 (13%)

Query: 145 HFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKA 204
            FA+ T+     L G+ F + +  L+L  VATD HRLAVA  +       + + ++P   
Sbjct: 134 RFAVGTDPTVPALTGVLFDVTDSGLEL--VATDRHRLAVATAEATVHGPAVRT-LLPLDT 190

Query: 205 VGEILRILSSKDSS------------VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
           V  +  +L +   +            V++++S S +  ++    +    +  +FP+Y  +
Sbjct: 191 VDALRHLLDASAGAGAGAGAGADRAVVELTVSGSSLVADVAGHELRATALPYDFPDYHAL 250

Query: 253 IPCS----NDKELRVNCTNLRQAVD 273
           +P S      + + V+   L  A+ 
Sbjct: 251 LPRSGAAGPTRRVPVDAEWLVTALR 275



 Score = 47.5 bits (112), Expect = 0.003,   Method: Composition-based stats.
 Identities = 17/67 (25%), Positives = 29/67 (43%), Gaps = 14/67 (20%)

Query: 319 PMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFY 378
            + +  N +YLL+ +D           +   LDS  + + IR  D +          AF 
Sbjct: 344 ELRVGVNGEYLLDALDAAGGRH-----LTLELDSPLTPLTIRRPDDE---------GAFS 389

Query: 379 VLMPMRI 385
           +LMP+R+
Sbjct: 390 ILMPIRL 396



 Score = 41.0 bits (95), Expect = 0.32,   Method: Composition-based stats.
 Identities = 14/67 (20%), Positives = 22/67 (32%), Gaps = 2/67 (2%)

Query: 20  IIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCG-SITVSAHLLYDIV 78
            +    T+P    VL    D  LE+ A+           A+V        +      D +
Sbjct: 136 AVGTDPTVPALTGVLFDVTDSGLELVATDRHRLAVATAEATVHGPAVRTLLPLDT-VDAL 194

Query: 79  RKLQDGA 85
           R L D +
Sbjct: 195 RHLLDAS 201


>gi|303250285|ref|ZP_07336485.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|307252050|ref|ZP_07533950.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|302650901|gb|EFL81057.1| hypothetical protein APP6_1700 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
 gi|306860519|gb|EFM92532.1| hypothetical protein appser6_5690 [Actinobacillus pleuropneumoniae
           serovar 6 str. Femo]
          Length = 205

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 35/175 (20%), Positives = 76/175 (43%), Gaps = 12/175 (6%)

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
            +    ++         ++R  LNG++F++       C  AT+GH     + ++ A   K
Sbjct: 9   DIDVLYLKAASLFAGKNDVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPK 64

Query: 195 MPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
               I+P + + +IL I           ++V+ ++  I   +  +++  + I+G+FPN  
Sbjct: 65  RKGFIMPNELIKQILLIKPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLC 124

Query: 251 NVIP--CSNDKELRVNCTNLRQAVDRVSIMSSV--RIQAVKLSLSSDKLCMTVDN 301
            V P   SN+K    N   +  A     ++  +  +   +  +LS +   +++DN
Sbjct: 125 AVYPLKESNNKTKTYNANYINLAAKATKLLKPIIGKDAGIDFNLSDNSSILSIDN 179


>gi|315157443|gb|EFU01460.1| DNA polymerase III beta subunit protein [Enterococcus faecalis
           TX0312]
          Length = 209

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 36/254 (14%), Positives = 84/254 (33%), Gaps = 63/254 (24%)

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
            L +    A++  E R  L  + +  N         ATD HRL +           + + 
Sbjct: 5   KLSKHLKRAVSKFESRPILRCVHYDANGS-----IAATDSHRLLL-----------IENF 48

Query: 199 IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND 258
               K + + +R +                            ++D  +P   ++IP    
Sbjct: 49  HNHNKEINQDIRTME---------------------------ILDAPYPELGHLIPNKAK 81

Query: 259 KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD--MGK-AIESMNVYY 315
            ++++   +L   +     +++   + + + +   K+  T  + +   G      +N   
Sbjct: 82  SKIKI-TISLSVLLRAAKALNTSTDEIIVMKIEQGKITFTNLHDEKIYGSPVKIEVNAQV 140

Query: 316 NECPMDICFNYKYLLEI----IDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
               M +  N +Y+++     +D    +    D+ V  L S N    +  K+        
Sbjct: 141 VGESMKLGVNSRYIIDACEFLLDA--KERYAVDDTVIHLYSENKPFTLEIKEG------- 191

Query: 372 NKVNAFYVLMPMRI 385
                 Y++ P+R+
Sbjct: 192 ---KYLYLVTPVRL 202


>gi|253581730|ref|ZP_04858954.1| predicted protein [Fusobacterium varium ATCC 27725]
 gi|251836079|gb|EES64616.1| predicted protein [Fusobacterium varium ATCC 27725]
          Length = 227

 Score = 64.9 bits (157), Expect = 2e-08,   Method: Composition-based stats.
 Identities = 41/232 (17%), Positives = 86/232 (37%), Gaps = 38/232 (16%)

Query: 156 YLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSK 215
            LN I  H  E       V +D +RL V +  I   I            +  I  + ++K
Sbjct: 30  ALNRIHLHKGE------IVCSDSYRLGVYKSSIDTDITCSI-------PLDIIKALKAAK 76

Query: 216 DSSVKVS-LSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
              + ++ ++ + + L  +   +  +     +P Y ++I      + ++      + ++ 
Sbjct: 77  IKQIGIAGMAGTDVELKTDKFRIQFKQNTLAYPKYDDLISIKPVVKAKIKTAEFLRKLEG 136

Query: 275 VSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIID 334
              +S      V L +  D L ++ ++ +      S+    +   + IC N KYL   + 
Sbjct: 137 AKNVSDK----VVLKVYKDCLEISAES-ETDNYHNSIEAKADGE-IKICLNNKYLATYLK 190

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMP--MR 384
                 V ++ V     S++S + I  ++              Y+LMP  MR
Sbjct: 191 -----RVKNEYVEIGFISTHSQIHIHEENM-----------YEYILMPCVMR 226


>gi|327198324|ref|YP_004306898.1| DnaN [Streptococcus phage Dp-1]
 gi|314912626|gb|ADT64017.1| DnaN [Streptococcus phage Dp-1]
          Length = 357

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 36/315 (11%), Positives = 108/315 (34%), Gaps = 29/315 (9%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS 60
           M I  +  ++ +++    ++   K  + ++ +  +  +   +   A      +   I + 
Sbjct: 1   MSIKFKTEELSKIVSQLNKLKPSK-LLEITNYWHIFGDGECVMFTAYDGSNFLRCIIDSD 59

Query: 61  VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
           V++   + V A     +V K          +E+ L        G+  + +    E E   
Sbjct: 60  VEID--VIVKAEQFGKLVEKTTAATVTLVPEESSLKVI-----GNGEYNIDIVTEDEEYP 112

Query: 121 -----TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVA 175
                 ++     +  L SS+   +      A++         G      +      A+ 
Sbjct: 113 TFDHLLEDVSEENALTLKSSLFYGIANINDSAVSKSGADGIYTGFLLKGGK------AIT 166

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD  R+ +  +       K   +++P   +  +  I    +      + ++ ++++  S+
Sbjct: 167 TDIIRVCINPIK-----EKGLEMLIPYNLMSILASIPD--EKMYFWQIDDTTVYISSASV 219

Query: 236 SMSVRLIDG--EFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQA-VKLSLSS 292
            +  +L++G  ++ +   +     + +  +    +   +DR+ + +S   +  V+     
Sbjct: 220 EIYGKLMEGMEDYEDVSQLDSIEFEDDAAIPTAEILSVLDRLVLFTSAFDKGTVEFLFLK 279

Query: 293 DKLCMTVDNPDMGKA 307
           D+L +          
Sbjct: 280 DRLRIKTSTSSYEDI 294


>gi|311895841|dbj|BAJ28249.1| putative MerR family transcriptional regulator [Kitasatospora setae
           KM-6054]
          Length = 333

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 40/225 (17%), Positives = 77/225 (34%), Gaps = 43/225 (19%)

Query: 159 GIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSS 218
           GIF   + ED  L  VATD +RLAVA+           +++    A      +  ++++ 
Sbjct: 150 GIFL--DAEDGALHLVATDRYRLAVADCPAALDGPPASALLPTALADAARALLADAEEAE 207

Query: 219 VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIM 278
             +S       +     S+S   +  +FP+Y+ ++       L +    LR         
Sbjct: 208 --LSFDGDHFAIRAAGRSLSGERVPADFPDYRRLLRHEPTHRLTLTAAELRA-------- 257

Query: 279 SSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS 338
                    L  +     +T            +        + +  N+ YLLE       
Sbjct: 258 ---------LPATDGSTTLTATPAHA------LPGTPAPTALLVHVNHDYLLEAAG---- 298

Query: 339 DEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
                +++V  L    + + IR           ++ + F +LMP+
Sbjct: 299 ---TAEQLVLELGGPIAPLAIRFP---------SRADTFSLLMPI 331


>gi|213021785|ref|ZP_03336232.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. 404ty]
          Length = 57

 Score = 64.5 bits (156), Expect = 3e-08,   Method: Composition-based stats.
 Identities = 21/71 (29%), Positives = 32/71 (45%), Gaps = 14/71 (19%)

Query: 315 YNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKV 374
           Y    M+I FN  Y+L++++ +       + V   L  S SSV I               
Sbjct: 1   YGGTEMEIGFNVSYVLDVLNALKC-----ETVRIMLTDSVSSVQIEDA---------ASQ 46

Query: 375 NAFYVLMPMRI 385
           +A YV+MPMR+
Sbjct: 47  SAAYVVMPMRL 57


>gi|54023099|ref|YP_117341.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
 gi|54014607|dbj|BAD55977.1| putative transcriptional regulator [Nocardia farcinica IFM 10152]
          Length = 346

 Score = 62.9 bits (152), Expect = 7e-08,   Method: Composition-based stats.
 Identities = 30/235 (12%), Positives = 81/235 (34%), Gaps = 34/235 (14%)

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210
           +     L G+   +++  + +   ATD +RL+   V     + +  S +V     G +  
Sbjct: 140 DPEFPVLAGVLLEVDDTGVTV--TATDRYRLSTRSVAPRRGVERSWSAVVEA---GVLTA 194

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSND--KELRVNCTNL 268
            ++     + ++  E  + +   + S  +  I  +FP+Y+ V+         + +     
Sbjct: 195 AVAETPGELVLAEDEGGVRIVTGAASRRLPGIAADFPDYRAVLAGLGPARTRVLLGRAP- 253

Query: 269 RQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKY 328
                 +          V L ++   + +       G    ++       P+ + F+ + 
Sbjct: 254 ------LLAALEAATAPVPLVVAGAGVAL------GGPVPVTLPATVTGTPLRLAFDPRV 301

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
           L   +     ++ +  E++  L + +  V +R                  ++MP+
Sbjct: 302 LRPAV-----EDALGPELMLDLTAPDQPVVLRSATDGDLTT---------LVMPV 342



 Score = 42.9 bits (100), Expect = 0.077,   Method: Composition-based stats.
 Identities = 23/95 (24%), Positives = 36/95 (37%), Gaps = 8/95 (8%)

Query: 28  PVSCHVLLQANDGLLEIKASG-PEIEITGAIP-ASVDVCGSITVSAHLLYDIVRKLQDGA 85
           PV   VLL+ +D  + + A+    +      P   V+   S  V A +L   V +     
Sbjct: 144 PVLAGVLLEVDDTGVTVTATDRYRLSTRSVAPRRGVERSWSAVVEAGVLTAAVAETPGE- 202

Query: 86  QISFFKENELGTEVNISHGDSNFYLQSFPESEFPS 120
                 E+E G  V I  G ++  L      +FP 
Sbjct: 203 --LVLAEDEGG--VRIVTGAASRRLPGIAA-DFPD 232


>gi|75761788|ref|ZP_00741723.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
 gi|74490721|gb|EAO54002.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
           israelensis ATCC 35646]
          Length = 114

 Score = 61.8 bits (149), Expect = 2e-07,   Method: Composition-based stats.
 Identities = 11/48 (22%), Positives = 28/48 (58%), Gaps = 1/48 (2%)

Query: 295 LCMTVDNPDMGKAIESMNVYY-NECPMDICFNYKYLLEIIDNISSDEV 341
           L ++ ++P++GK +E +     +   + I F+ KY+++ +  + S E+
Sbjct: 2   LEISSNSPEIGKVVEEVQCEKVDGEELKISFSAKYMMDALKALDSTEI 49


>gi|226305007|ref|YP_002764965.1| MerR family transcriptional regulator [Rhodococcus erythropolis
           PR4]
 gi|226184122|dbj|BAH32226.1| putative MerR family transcriptional regulator [Rhodococcus
           erythropolis PR4]
          Length = 327

 Score = 61.0 bits (147), Expect = 3e-07,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 63/153 (41%), Gaps = 11/153 (7%)

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     ++ S  L+  ++   FA+  E     L G+   I+  D     V TD  R
Sbjct: 97  IDSLPASGGVDIDSWDLRRALDAVLFAVNEESEFPILRGVHLDIH--DGVAAFVTTDQFR 154

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAVAEV +    A   S +VP        R+L      V ++ S   +  +     +S  
Sbjct: 155 LAVAEVKV--HSALTVSAVVP----VAFARLLRDVAGVVTLTFSPRTVTASYPGGEVSSP 208

Query: 241 LI-DGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
           LI DGEFP+++  I   ++  + ++  +L   +
Sbjct: 209 LIEDGEFPDHR--ILREHNDAVELSGDHLAALL 239


>gi|399398|sp|P31861|DPO3B_RHOCA RecName: Full=DNA polymerase III subunit beta
 gi|250529|gb|AAB22385.1| DnaN=3' of GyrB [Rhodobacter capsulatus, SB1003, Peptide, 70 aa]
          Length = 70

 Score = 60.6 bits (146), Expect = 4e-07,   Method: Composition-based stats.
 Identities = 25/57 (43%), Positives = 35/57 (61%)

Query: 171 LCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR 227
           L  VATDGHRLA  +  +      MP +IVPRK V E+  +L   ++ + VS+SE+R
Sbjct: 10  LRCVATDGHRLARIDAVLPEGANGMPGVIVPRKTVNELRNVLDDDEAQIAVSVSETR 66


>gi|312137809|ref|YP_004005145.1| DNA polymerase III beta chain/merr family transcriptional regulator
           [Rhodococcus equi 103S]
 gi|311887148|emb|CBH46457.1| putative DNA polymerase III beta chain/MerR family transcriptional
           regulator [Rhodococcus equi 103S]
          Length = 352

 Score = 59.9 bits (144), Expect = 6e-07,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 27/255 (10%)

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S   ++   +  L++ +L   V +   A A E     L GI   +   D  +   ATD +
Sbjct: 111 SLPVQDRGSAVTLSARLLAEAVRQVRRAAAAEAEFPILTGILIEV--GDGAVVLTATDRY 168

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSM 237
           RL+   +           ++    +  E+  I +  S D++  +      + +    LS 
Sbjct: 169 RLSTRSLPAHTPDRAWTGVV----SASELDAIGAALSPDAAAILRPDSGAVDIATPGLSA 224

Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              +++GE+P+Y+ ++         +      L       ++        V+L  +S +L
Sbjct: 225 RFAVLEGEYPDYRTMLDALPPARTRVVTRRDELF------AVAEGPVDDTVRLVGASGQL 278

Query: 296 CMTV-DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             +V D P        +    +   + + F    LL  +     +  V  +V+  + + +
Sbjct: 279 TASVRDGPPQA-----VAARVDGPDVTLTFRRGNLLAAL-----ETAVGPDVMLDISAPD 328

Query: 355 SSVFIRGKDKDSKNN 369
             V  R         
Sbjct: 329 LPVVFRSATDGDLTT 343



 Score = 39.8 bits (92), Expect = 0.68,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 28  PVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKL-QDGA 85
           P+   +L++  DG + + A+      T ++PA   D   +  VSA  L  I   L  D A
Sbjct: 146 PILTGILIEVGDGAVVLTATDRYRLSTRSLPAHTPDRAWTGVVSASELDAIGAALSPDAA 205

Query: 86  QISF 89
            I  
Sbjct: 206 AILR 209


>gi|325676088|ref|ZP_08155770.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
 gi|325553128|gb|EGD22808.1| transcriptional regulator [Rhodococcus equi ATCC 33707]
          Length = 353

 Score = 59.9 bits (144), Expect = 7e-07,   Method: Composition-based stats.
 Identities = 41/255 (16%), Positives = 89/255 (34%), Gaps = 27/255 (10%)

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S   ++   +  L++ +L   V +   A A E     L GI   +   D  +   ATD +
Sbjct: 112 SLPVQDRGSAVTLSARLLAEAVRQVRRAAAAEAEFPILTGILIEV--GDGAVVLTATDRY 169

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILS--SKDSSVKVSLSESRIHLNIESLSM 237
           RL+   +           ++    +  E+  I +  S D++  +      + +    LS 
Sbjct: 170 RLSTRSLPAHTPDRAWTGVV----SASELDAIGAALSPDAAAILRPDSGAVDIATPGLSA 225

Query: 238 SVRLIDGEFPNYQNVIPCSND--KELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKL 295
              +++GE+P+Y+ ++         +      L       ++        V+L  +S +L
Sbjct: 226 RFAVLEGEYPDYRTMLDALPPARTRVVTRRDELF------AVAEGPVDDTVRLVGASGQL 279

Query: 296 CMTV-DNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSN 354
             +V D P        +    +   + + F    LL  +     +  V  +V+  + + +
Sbjct: 280 TASVRDGPPQA-----VAARVDGPDVTLTFRRGNLLAAL-----ETAVGPDVMLDISAPD 329

Query: 355 SSVFIRGKDKDSKNN 369
             V  R         
Sbjct: 330 LPVVFRSATDGDLTT 344



 Score = 39.8 bits (92), Expect = 0.71,   Method: Composition-based stats.
 Identities = 18/64 (28%), Positives = 28/64 (43%), Gaps = 2/64 (3%)

Query: 28  PVSCHVLLQANDGLLEIKASGPEIEITGAIPASV-DVCGSITVSAHLLYDIVRKL-QDGA 85
           P+   +L++  DG + + A+      T ++PA   D   +  VSA  L  I   L  D A
Sbjct: 147 PILTGILIEVGDGAVVLTATDRYRLSTRSLPAHTPDRAWTGVVSASELDAIGAALSPDAA 206

Query: 86  QISF 89
            I  
Sbjct: 207 AILR 210


>gi|229490192|ref|ZP_04384039.1| transcriptional regulator, MerR family [Rhodococcus erythropolis
           SK121]
 gi|229322940|gb|EEN88714.1| transcriptional regulator, MerR family [Rhodococcus erythropolis
           SK121]
          Length = 339

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 37/153 (24%), Positives = 62/153 (40%), Gaps = 11/153 (7%)

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                     ++ S  L+  ++   FA+  E     L G+   I+  D     V TD  R
Sbjct: 109 IDALPISGGVDIDSWDLRRALDAVLFAVNEESEFPILRGVHLDIH--DGVAAFVTTDQFR 166

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVR 240
           LAVAEV +    A   S +VP        R+L      V ++ S   +  +     +S  
Sbjct: 167 LAVAEVTV--HSALTVSAVVP----VTFARLLRDVAGVVTLTFSARTVTASYPRGEVSSP 220

Query: 241 LI-DGEFPNYQNVIPCSNDKELRVNCTNLRQAV 272
           LI DGEFP+++  I   +   + ++  +L   +
Sbjct: 221 LIEDGEFPDHR--ILREHHNAVELSGDHLAALL 251


>gi|41057666|ref|NP_958120.1| gp15 [Burkholderia phage Bcep43]
 gi|40737653|gb|AAR89306.1| gp15 [Burkholderia phage Bcep43]
          Length = 193

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVG 206
            A ++IRYYLNGI          L  VATDGHR  +  +   A    +  S+I+P  A+ 
Sbjct: 16  AAKQDIRYYLNGILLEAAVNGD-LHIVATDGHRAFIGRIAGGATSWPEFTSLIIPTDAIK 74

Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
              +          V+++ +     + S       IDG FP+++ ++P 
Sbjct: 75  VAAKKGD-------VTVAPAGARYALGSTLFDA--IDGRFPDWRRIVPR 114


>gi|23752326|ref|NP_705641.1| gp15 [Burkholderia phage Bcep781]
 gi|23507193|gb|AAN38016.1| gp15 [Burkholderia phage Bcep781]
          Length = 193

 Score = 59.1 bits (142), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 30/109 (27%), Positives = 49/109 (44%), Gaps = 11/109 (10%)

Query: 148 MATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQI-AKMPSIIVPRKAVG 206
            A ++IRYYLNGI          L  VATDGHR  +  +   A    +  S+I+P  A+ 
Sbjct: 16  AAKQDIRYYLNGILLEAAVNGD-LHIVATDGHRAFIGRIAGGATSWPEFTSLIIPTDAIK 74

Query: 207 EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC 255
              +          V+++ +     + S       IDG FP+++ ++P 
Sbjct: 75  VAAKKGD-------VTVAPAGARYALGSTLFDA--IDGRFPDWRRIVPR 114


>gi|2126505|pir||PC4178 DNA-directed DNA polymerase (EC 2.7.7.7) III beta chain -
          Synechococcus sp. (fragment)
          Length = 47

 Score = 58.7 bits (141), Expect = 1e-06,   Method: Composition-based stats.
 Identities = 11/47 (23%), Positives = 22/47 (46%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKAS 47
          MK+   ++++   L    R +  +   PV  +VLL A+ G   +  +
Sbjct: 1  MKLVCRQNELNTSLSLVSRAVPSRPNHPVLANVLLAADAGTQRLSLT 47


>gi|254259653|ref|ZP_04950707.1| gp15 [Burkholderia pseudomallei 1710a]
 gi|254218342|gb|EET07726.1| gp15 [Burkholderia pseudomallei 1710a]
          Length = 196

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 32/132 (24%), Positives = 56/132 (42%), Gaps = 6/132 (4%)

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA-QIAKMPSIIVPRKAVGEIL 209
            +IRYYLNGI    +E++ ++  +ATDGHR AV  V      +      I+PR  V  + 
Sbjct: 20  NDIRYYLNGICIEAHEKETRV--IATDGHRAAVVRVSAENVDVTPRTRFIIPRATVESMK 77

Query: 210 RILSSKDSSVKVSL--SESRIHLNIESLSMSVRLIDGEFPNYQNVIP-CSNDKELRVNCT 266
              ++    + +                    + ++G FP+Y+ VIP  ++ K  + N  
Sbjct: 78  VSKAALKHPIAIEGPNDSGEYRATGGFGVAIFQAVEGVFPDYRRVIPETTSGKLAQYNPA 137

Query: 267 NLRQAVDRVSIM 278
            L        ++
Sbjct: 138 YLADMAKAAELL 149


>gi|33322979|gb|AAQ07226.1|AF496534_1 DNA polymerase III, beta chain [Lactobacillus delbrueckii subsp.
          lactis]
          Length = 67

 Score = 58.7 bits (141), Expect = 2e-06,   Method: Composition-based stats.
 Identities = 18/67 (26%), Positives = 30/67 (44%), Gaps = 4/67 (5%)

Query: 15 GHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPAS----VDVCGSITVS 70
              + +  +  IP+   + L   +  L +  S  +I I  + P S    V+  GSI V+
Sbjct: 1  NSVLKAVSSRVQIPILSGIKLDLTETELIMTGSNADISIELSQPVSDDLRVESTGSIVVT 60

Query: 71 AHLLYDI 77
          AHL  +I
Sbjct: 61 AHLFSEI 67


>gi|239983464|ref|ZP_04705988.1| putative transcriptional regulator [Streptomyces albus J1074]
 gi|291455287|ref|ZP_06594677.1| conserved hypothetical protein [Streptomyces albus J1074]
 gi|291358236|gb|EFE85138.1| conserved hypothetical protein [Streptomyces albus J1074]
          Length = 357

 Score = 57.9 bits (139), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 49/260 (18%), Positives = 85/260 (32%), Gaps = 36/260 (13%)

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            +   VL + VE+   A A E     L G   HI      L   ATD +RL+   +    
Sbjct: 121 TVKGPVLADAVEQVLTATAHEPGMAVLGG--LHIEAGGEALALTATDRYRLSTRTLAPAR 178

Query: 191 QIAKMPSIIVPRKAVG----EILRILSSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGE 245
              +  S  V    +     E+ R        V+V      I L +        R +   
Sbjct: 179 PAEQSWSGTVDGDDLRAAAPEVRRTP-----LVRVEAVPHGIWLRLPGREDRHCRTLPER 233

Query: 246 FPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           FP+++ ++           V    L +A++            V L +S   +  TV  PD
Sbjct: 234 FPDHRQLLASLGEVTTRATVPKEPLLRALE------EHPGDHVTLRVSGHAV--TVGPPD 285

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKD 363
                 ++       P++I F    L   +      +V+ D              +RG D
Sbjct: 286 ARHPGTTVAATVRGEPLEIRFATTTLYPALSTAIGPDVMLD--------------LRGHD 331

Query: 364 KDSKNNKDNKVNAFYVLMPM 383
           +       ++ +   + MP+
Sbjct: 332 QPVTLRSADRGDLTTLAMPV 351



 Score = 37.1 bits (85), Expect = 4.1,   Method: Composition-based stats.
 Identities = 12/73 (16%), Positives = 25/73 (34%), Gaps = 2/73 (2%)

Query: 4   TVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIPA-SV 61
           TV+   + + +         +  + V   + ++A    L + A+    +      PA   
Sbjct: 121 TVKGPVLADAVEQVLTATAHEPGMAVLGGLHIEAGGEALALTATDRYRLSTRTLAPARPA 180

Query: 62  DVCGSITVSAHLL 74
           +   S TV    L
Sbjct: 181 EQSWSGTVDGDDL 193


>gi|273810561|ref|YP_003344942.1| gp7 [Sodalis phage SO-1]
 gi|258619846|gb|ACV84099.1| gp7 [Sodalis phage SO-1]
          Length = 172

 Score = 57.6 bits (138), Expect = 3e-06,   Method: Composition-based stats.
 Identities = 34/154 (22%), Positives = 58/154 (37%), Gaps = 16/154 (10%)

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIV 200
           ++      AT ++RYYLNG+FF           VATDGHRL        A + +  S IV
Sbjct: 11  LKAAMMCAATNDVRYYLNGVFFDEEG-----FIVATDGHRLFCG----SAVVPEGESKIV 61

Query: 201 PRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKE 260
             K          + D +         + +     ++ V ++DG FP+++      + K 
Sbjct: 62  AIKGRLPTKFEYCNIDGTSAAFFDSKDVLIG----TIPVEIVDGRFPDWRRFTSFDSAKV 117

Query: 261 --LRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
             +      L  A     +    +  ++KL    
Sbjct: 118 EAIGFAGAYLSDACKIAKLF-DRKFDSLKLEFQG 150


>gi|261883858|ref|ZP_06007897.1| DNA polymerase III subunit beta [Campylobacter fetus subsp.
           venerealis str. Azul-94]
          Length = 100

 Score = 57.2 bits (137), Expect = 5e-06,   Method: Composition-based stats.
 Identities = 16/109 (14%), Positives = 39/109 (35%), Gaps = 17/109 (15%)

Query: 279 SSVRIQAVKLS-LSSDKLCMTVDNPDMGKAIESMNVYY--NECPMDICFNYKYLLEIIDN 335
           S  R   + L  L   ++ ++ +  + G+  E+  +     E    I  + ++LL+ +  
Sbjct: 4   SEWRNNNILLEVLDETRIKISSNGTEFGRIEETQEIVKRSGEGDFRITLDARFLLDALKV 63

Query: 336 ISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
           I      ++ V          + I   D           +  +++ P+R
Sbjct: 64  ID-----EESVKITYSGDMKPIMIEPIDN---------FDYLHLISPVR 98


>gi|148927275|ref|ZP_01810845.1| DNA polymerase III, beta chain [candidate division TM7 genomosp.
           GTL1]
 gi|147887334|gb|EDK72788.1| DNA polymerase III, beta chain [candidate division TM7 genomosp.
           GTL1]
          Length = 241

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L +      +G+         +     +  N +YLLE +  I         + FR 
Sbjct: 161 EKGTLAIHSIASQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSS-----ITFRF 214

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   +   D ++           +++MP++
Sbjct: 215 SGKLSPCRLTATDDEA--------TYQHIIMPLK 240


>gi|48697221|ref|YP_024951.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B]
 gi|47779027|gb|AAT38390.1| putative DNA polymerase III protein [Burkholderia phage BcepC6B]
          Length = 171

 Score = 56.8 bits (136), Expect = 6e-06,   Method: Composition-based stats.
 Identities = 27/150 (18%), Positives = 64/150 (42%), Gaps = 8/150 (5%)

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA--KMPSIIVPRKAVGEILRILSSKDS 217
           +F      + +L  VATDGH+  V    +   +   +   +I+P +A+  +    S    
Sbjct: 1   MFIEATPYETRL--VATDGHKAGVFRYAVENDVPAGETAEVIIPHEAIDRLKAAKSDLVH 58

Query: 218 SVKVSLSESRIHLNIE--SLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRV 275
            V++ + + +  L ++     +    +DG +P+Y+ + P +          +L     + 
Sbjct: 59  FVRLEVEDRQCSLCVDAMGARIQFVAVDGRYPDYRRIFPKTMSGVPGQYRADLLMDFAKA 118

Query: 276 SIMSSVRIQAV--KLSLSSDKLCMTVDNPD 303
           + +   +  AV  +L+ + D   ++ D+ D
Sbjct: 119 AKLLIKKSPAVMPRLTYNGDSARVSFDDYD 148


>gi|239927510|ref|ZP_04684463.1| putative transcriptional regulator [Streptomyces ghanaensis ATCC
           14672]
 gi|291435853|ref|ZP_06575243.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
 gi|291338748|gb|EFE65704.1| transcriptional regulator [Streptomyces ghanaensis ATCC 14672]
          Length = 356

 Score = 55.6 bits (133), Expect = 1e-05,   Method: Composition-based stats.
 Identities = 42/272 (15%), Positives = 93/272 (34%), Gaps = 36/272 (13%)

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH 179
           S  +   +    L   VL + +E+   A   E     L  +     +E + L   ATD +
Sbjct: 109 SLADVPSLPVAALKGPVLADAIEQVLAAAVREPGMPVLGALRVEATQEAVTL--TATDRY 166

Query: 180 RLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSS--KDSSVKVSLSESRIHLNIESL-S 236
           RL+   +      A   +  V      E+   ++   + + V+V  +     L +     
Sbjct: 167 RLSTRTLVPAEAGATAWAATVSG---DELRAAVADIRRSALVRVEATPHGCRLRMADRGD 223

Query: 237 MSVRLIDGEFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
              RL+  EFP+++ ++         + V+   L++A++       +  + V L ++   
Sbjct: 224 RHCRLLSEEFPDHRLMLASLPEVTTRVTVSKGLLQRALE------EIPGERVTLRVTRRG 277

Query: 295 LCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNI--SSDEVVDDEVVFRLDS 352
           L +   + +       +        + I F        +  +  +    +  +V+  L  
Sbjct: 278 LSVLTTDGEHPGV--PLAAAVTGRGLRISF-------ELTTLYPAVSTAIGPDVMLDLRG 328

Query: 353 SNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
            +    IR  D+              + MP+R
Sbjct: 329 PDQPATIRSADRGDLTT---------LAMPVR 351



 Score = 37.9 bits (87), Expect = 2.9,   Method: Composition-based stats.
 Identities = 6/51 (11%), Positives = 19/51 (37%), Gaps = 1/51 (1%)

Query: 9   DILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG-PEIEITGAIP 58
            + + +        R+  +PV   + ++A    + + A+    +     +P
Sbjct: 125 VLADAIEQVLAAAVREPGMPVLGALRVEATQEAVTLTATDRYRLSTRTLVP 175


>gi|126207974|ref|YP_001053199.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae L20]
 gi|126096766|gb|ABN73594.1| hypothetical protein APL_0490 [Actinobacillus pleuropneumoniae
           serovar 5b str. L20]
          Length = 136

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 26/131 (19%), Positives = 58/131 (44%), Gaps = 9/131 (6%)

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
            +    ++         ++R  LNG++F++       C  AT+GH     + ++ A   K
Sbjct: 9   DIDVLYLKAASLFAGKNDVRQNLNGVYFNLENG----CIQATNGHVAFTTKPNLFASFPK 64

Query: 195 MPSIIVPRKAVGEILRILSSKDSS----VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQ 250
               I+P + + +IL I           ++V+ ++  I   +  +++  + I+G+FPN  
Sbjct: 65  RKGFIMPNELIKQILLIKPFSKEEKFRTLQVAYNKGAITATLGGITVQGKEIEGKFPNLC 124

Query: 251 NVIP-CSNDKE 260
            V P   ++ +
Sbjct: 125 AVYPLKESNNK 135


>gi|332668941|ref|YP_004451949.1| regulatory protein MerR [Cellulomonas fimi ATCC 484]
 gi|332337979|gb|AEE44562.1| regulatory protein MerR [Cellulomonas fimi ATCC 484]
          Length = 327

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 41/258 (15%), Positives = 88/258 (34%), Gaps = 46/258 (17%)

Query: 127 VYSFELASSVLKNLVERTHFAMATEEIR-YYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
                +A+  L   V     A+   + R   L G+  H++   L+L  V  D  RLAVA 
Sbjct: 111 PARCVVAADALVGAVGAVRHAVGAADARWPGLAGVLLHLDGATLRL--VGCDRSRLAVAS 168

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGE 245
           V +         ++ P   +  +          V +          +E L  +   + G 
Sbjct: 169 VPVAEPSGPPVRVLAPPAFLDALTAATLPASGPVTLHPH------RLEVLGRTSAALAGA 222

Query: 246 FPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMG 305
           +P+Y+ ++P S      +    L +AV     +  VR+   +++L+              
Sbjct: 223 YPDYERLLPPSGLPAATMASGALTEAVVGAGDVVVVRLDGGRVALAP------------- 269

Query: 306 KAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
                         +   ++  +LL+ +    +     + V   LD   +++ +   D+ 
Sbjct: 270 --------PRPGDTL--GYSRSFLLDAVRAARA-----EHVALSLDDERAALGVSPADRP 314

Query: 366 SKNNKDNKVNAFYVLMPM 383
           +            ++MP+
Sbjct: 315 ADVG---------LVMPV 323


>gi|295835505|ref|ZP_06822438.1| conserved hypothetical protein [Streptomyces sp. SPB74]
 gi|197698590|gb|EDY45523.1| conserved hypothetical protein [Streptomyces sp. SPB74]
          Length = 358

 Score = 55.2 bits (132), Expect = 2e-05,   Method: Composition-based stats.
 Identities = 43/262 (16%), Positives = 88/262 (33%), Gaps = 40/262 (15%)

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
            L   VL + VE+   A A E     L G+   +  E + L   ATD +RL+   +    
Sbjct: 115 TLKGPVLADAVEQILTATAHEPGMPVLAGLRVEVGPEAIGL--TATDRYRLSTRTLVPPE 172

Query: 191 QIAKMPSIIVP----RKAVGEILRILSSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGE 245
              +  +  +     R AV E+ R      + V++      + L +        RL+  +
Sbjct: 173 PPPREWAGTLDGDDLRAAVTEVRR-----GARVRLEAVPHGVRLRMPGREDRHCRLLAED 227

Query: 246 FPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPD 303
           FP+++ ++           V    L +A++          + V L +    + +   + +
Sbjct: 228 FPDHRLMLGSLGEATTRATVPKNLLLRALE------EHPGEHVVLCVDGHGVSVRPVDGE 281

Query: 304 MGKAIESMNVYYNECPMDICFNYKYLLEIIDNISS--DEVVDDEVVFRLDSSNSSVFIRG 361
                  +       P+ + F        +  +       +  +V+  L   +  V IR 
Sbjct: 282 HPGV--PLPATVTGEPLRVRF-------AMTTLHPAVSTALGPDVMLDLRGDDRPVTIRS 332

Query: 362 KDKDSKNNKDNKVNAFYVLMPM 383
            D+              + MP+
Sbjct: 333 ADRGDLTT---------LAMPV 345


>gi|148927258|ref|ZP_01810829.1| DNA polymerase III, beta chain [candidate division TM7 genomosp.
           GTL1]
 gi|147887344|gb|EDK72797.1| DNA polymerase III, beta chain [candidate division TM7 genomosp.
           GTL1]
          Length = 97

 Score = 54.5 bits (130), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 14/94 (14%), Positives = 30/94 (31%), Gaps = 14/94 (14%)

Query: 291 SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
               L +      +G+         +     +  N +YLLE +  I         + FR 
Sbjct: 17  EKGTLAIHSIASQLGENTSEAEAKVS-ADGQVTLNSRYLLEALGAIDGSS-----ITFRF 70

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
               S   +   D ++           +++MP++
Sbjct: 71  SGKLSPCRLTATDDEA--------TYQHIIMPLK 96


>gi|2529425|gb|AAB81129.1| DNA polymerase III beta subunit [Mycobacterium bovis BCG]
          Length = 58

 Score = 54.1 bits (129), Expect = 3e-05,   Method: Composition-based stats.
 Identities = 9/44 (20%), Positives = 17/44 (38%)

Query: 3  ITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKA 46
            + R    + +    + +  +  +PV   VLL  +D  L I  
Sbjct: 15 FRLLRESFADAVSWVAKNLPARPAVPVLSGVLLTGSDNGLTISG 58


>gi|228911496|ref|ZP_04075289.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
 gi|228848145|gb|EEM93006.1| DNA polymerase III, beta subunit [Bacillus thuringiensis IBL 200]
          Length = 127

 Score = 53.3 bits (127), Expect = 6e-05,   Method: Composition-based stats.
 Identities = 21/102 (20%), Positives = 39/102 (38%), Gaps = 5/102 (4%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPE--IEITGAIP 58
           M+ T+ R+  +E L  A   ++ KN +P    VLL  N   + +  S     + +     
Sbjct: 15  MQFTINRTLFIEKLEKASVTVDVKNPMPALQGVLLDCNSKGMILMDSDGTEAVTLVTRFN 74

Query: 59  AS---VDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGT 97
            +       G +  +A  +   ++K +        K NEL  
Sbjct: 75  VNSGDCTEPGKMLFAAAPVLKTIKKFKSEFIGLEHKNNELKI 116


>gi|313611873|gb|EFR86330.1| DNA polymerase III, beta subunit [Listeria monocytogenes FSL
          F2-208]
          Length = 40

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 11/40 (27%), Positives = 20/40 (50%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDG 40
          MK  +ER  +++ +    R I  + TIP+   + +  ND 
Sbjct: 1  MKFVIERDRLVQAVNEVTRAISARTTIPILTGIKIVVNDE 40


>gi|288965530|pdb|3K4X|A Chain A, Eukaryotic Sliding Clamp Pcna Bound To Dna
          Length = 798

 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 124/334 (37%), Gaps = 50/334 (14%)

Query: 54  TGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
             +I   +D    +T  A  L DI++   L D   I    E     + ++  G   F+L 
Sbjct: 465 ETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLA 524

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                  P   +E        + ++     E + F    +  +  +  + F   E+   +
Sbjct: 525 -------PKFNDEGSNSQASNSGALEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDG--I 575

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSI---IVPRKAVGEILRILSSKDSSVKVSL----S 224
            A A D  R+ +  ++I  +  +       +     +  + +IL   +++  ++L    +
Sbjct: 576 IAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNT 635

Query: 225 ESRIHLNIESL------SMSVRL--IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
              I L  E          S++L  ID +F   + +     D  L +  +   + V  +S
Sbjct: 636 PDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEEL---QYDSTLSLPSSEFSKIVRDLS 692

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN------------ECPMDICF 324
            +S     ++ + ++ + +    D  D+G     +  + +            + P+D+ F
Sbjct: 693 QLSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTF 747

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             KYLL+II   S    + D V  RL S   ++F
Sbjct: 748 GAKYLLDIIKGSS----LSDRVGIRLSSEAPALF 777



 Score = 52.2 bits (124), Expect = 1e-04,   Method: Composition-based stats.
 Identities = 60/334 (17%), Positives = 124/334 (37%), Gaps = 50/334 (14%)

Query: 54  TGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENELGTEVNISHGDSNFYLQ 111
             +I   +D    +T  A  L DI++   L D   I    E     + ++  G   F+L 
Sbjct: 198 ETSIKLEMDQPVDLTFGAKYLLDIIKGSSLSDRVGIRLSSEAPALFQFDLKSGFLQFFLA 257

Query: 112 SFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKL 171
                  P   +E        + ++     E + F    +  +  +  + F   E+   +
Sbjct: 258 -------PKFNDEGSNSQSNGSGALEAKFEEASLFKRIIDGFKDCVQLVNFQCKEDG--I 308

Query: 172 CAVATDGHRLAVAEVDIVAQIAKMPSI---IVPRKAVGEILRILSSKDSSVKVSL----S 224
            A A D  R+ +  ++I  +  +       +     +  + +IL   +++  ++L    +
Sbjct: 309 IAQAVDDSRVLLVSLEIGVEAFQEYRCDHPVTLGMDLTSLSKILRCGNNTDTLTLIADNT 368

Query: 225 ESRIHLNIESL------SMSVRL--IDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVS 276
              I L  E          S++L  ID +F   + +     D  L +  +   + V  +S
Sbjct: 369 PDSIILLFEDTKKDRIAEYSLKLMDIDADFLKIEEL---QYDSTLSLPSSEFSKIVRDLS 425

Query: 277 IMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN------------ECPMDICF 324
            +S     ++ + ++ + +    D  D+G     +  + +            + P+D+ F
Sbjct: 426 QLSD----SINIMITKETIKFVADG-DIGSGSVIIKPFVDMEHPETSIKLEMDQPVDLTF 480

Query: 325 NYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             KYLL+II   S    + D V  RL S   ++F
Sbjct: 481 GAKYLLDIIKGSS----LSDRVGIRLSSEAPALF 510


>gi|188581946|ref|YP_001925391.1| hypothetical protein Mpop_2701 [Methylobacterium populi BJ001]
 gi|179345444|gb|ACB80856.1| hypothetical protein Mpop_2701 [Methylobacterium populi BJ001]
          Length = 384

 Score = 51.4 bits (122), Expect = 2e-04,   Method: Composition-based stats.
 Identities = 28/139 (20%), Positives = 57/139 (41%), Gaps = 22/139 (15%)

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
           +V  +L        +T++ R+YL G++   +        VATDGHR+ V      A    
Sbjct: 4   NVSADLFRIVAAYRSTDDSRFYLQGVYVQPHP-CGGAYLVATDGHRMLVVY---DASAEC 59

Query: 195 MPSIIV----------PRKAVGEILRILSSKDSSV----KVSLSESRIHLNIESLSMSV- 239
             + I+            K V +  R  +++D        +++ E +  ++ +   +   
Sbjct: 60  TEAAIIACPSDLLRAAKSKPVRQRRRGTAAQDGEPMGPRMLAVIEDQAIISCDGFEVHRG 119

Query: 240 ---RLIDGEFPNYQNVIPC 255
               +IDG FP+++  +P 
Sbjct: 120 GAPAVIDGTFPDWRRTVPT 138


>gi|288561615|ref|YP_003429021.1| hypothetical protein BpOF4_20669 [Bacillus pseudofirmus OF4]
 gi|288548247|gb|ADC52129.1| hypothetical protein BpOF4_20669 [Bacillus pseudofirmus OF4]
          Length = 368

 Score = 51.0 bits (121), Expect = 3e-04,   Method: Composition-based stats.
 Identities = 59/345 (17%), Positives = 127/345 (36%), Gaps = 38/345 (11%)

Query: 38  NDGLLEIKASGPEIEITGAIPASVDVCGSI--TV-SAHLLYDIVRKLQDGAQISFFKENE 94
            +  + +  +  E+ I   + A V    +I  T+  A L   I   L     +    +  
Sbjct: 36  KENKVTLFFNSEEVCIKRELHAEVTKEATISTTLREASLKASI---LPKEQTVGVIPDKG 92

Query: 95  LGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEI- 153
           +              L +  E+ F S  E       E  +S  + L+       A     
Sbjct: 93  ILQFCWGRSSHVKMQLITETEASF-SVPEV--TSWVEWGASHFQGLIAALFPFCAVSGSA 149

Query: 154 ----RYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEIL 209
                    GI   I ++  ++   ATDG + A+  +       +  +  +P +A+  + 
Sbjct: 150 PAKKSPVTMGIN--IFKDKKEIMVKATDG-QTAIRVMPKDVDWFEKTTTSIPIRALLALT 206

Query: 210 RILSSKDSSVKVSLSESR--IHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKEL--RVNC 265
            ++ SK   VK+ L+E +  + ++  +    VRL+ G++PN       + D       + 
Sbjct: 207 EVIDSK-GIVKLGLNEDKSLLIVSSSNTVSVVRLLIGQYPNLDPAFVSTTDAGAIWTFDR 265

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSLSSDKLC-MTVDNPDMGKAIESMNVYYNECPM-DIC 323
             L      VS + + +   +KL     K+  +TVD    G   + +  +     + D C
Sbjct: 266 LELLSLARSVSKL-NGKEPILKLQKEGSKVFGLTVD----GSLKQQIGAFGEGDNVNDFC 320

Query: 324 FNYKYLLEIIDNISSDEVV--DDEVVFRLDSSNSSVFIRGKDKDS 366
            N +       N+    ++   +E++F   ++ + + +  ++ +S
Sbjct: 321 INAR-------NVEKAAILYRSEELIFTQRTNLAPMTVTSEEDES 358


>gi|296121344|ref|YP_003629122.1| hypothetical protein Plim_1086 [Planctomyces limnophilus DSM 3776]
 gi|296013684|gb|ADG66923.1| hypothetical protein Plim_1086 [Planctomyces limnophilus DSM 3776]
          Length = 438

 Score = 50.6 bits (120), Expect = 4e-04,   Method: Composition-based stats.
 Identities = 56/337 (16%), Positives = 110/337 (32%), Gaps = 61/337 (18%)

Query: 67  ITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEY 126
           +TV A LL D+     D   ++   + +L      + G   F +    E E+      E 
Sbjct: 79  VTVPATLLRDVQGTTPD--IVTIEVDQDLIKARWTTSG---FEM----EREYQRMDPPEG 129

Query: 127 VYSFELASSVLK-----NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRL 181
                 +  V         ++R          RY L+ +               ++GH+L
Sbjct: 130 WPRAIWSELVEAPPGFLAALQRVMSLRDPSIKRYSLSCV----QYSAQHQRLAGSNGHQL 185

Query: 182 AVAE---VDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
            +     +     +    + I    A+ E  R      S+V ++ + + + +   S  + 
Sbjct: 186 LIWNGLPLPWSDDLLLAGTDIF---ALPEWERA-----STVHLARTPTDLVVQSGSWVVG 237

Query: 239 VRL-IDGEFPNYQNVIPCSNDKELRVNCT--------NLRQAVDRVSIMSSVRIQ-AVKL 288
           +++  +G +P    V+P  ++   ++            L + + +  I S  RI   V +
Sbjct: 238 LKIETEGRYPLIDRVVPQLSETASQMELHPVDACRLIELLEHLPQAQITSEERIHQPVTV 297

Query: 289 SLSSDKLCMTVDNPDMGKAIESMNVYYN--ECPMDICFNYKYLLEIIDNISSDEVVDDEV 346
            LS     + +      +A E              I    +YLL  +             
Sbjct: 298 DLSQAFPVIRIQTRCAARATEIQLTRSTCWGTSGAISLETRYLLSALK--------MGFQ 349

Query: 347 VFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
                SS S+V +   +            AFYV+MP+
Sbjct: 350 QLGFQSSESAVRLDTPE------------AFYVIMPL 374


>gi|160898840|ref|YP_001564422.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1]
 gi|160364424|gb|ABX36037.1| hypothetical protein Daci_3399 [Delftia acidovorans SPH-1]
          Length = 174

 Score = 50.2 bits (119), Expect = 5e-04,   Method: Composition-based stats.
 Identities = 32/165 (19%), Positives = 56/165 (33%), Gaps = 28/165 (16%)

Query: 135 SVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAK 194
            +   +++    A A +++RYYL G+             VATDG RL  A          
Sbjct: 2   HIKTAILKAVSLAAAKKDLRYYLKGVLI------NDRHIVATDGSRLHAARHGAEWLHGP 55

Query: 195 MPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIP 254
               I+P   +   L+  S        S+ +           +    +DG FP Y+ V+P
Sbjct: 56  R---IIPIDNLLLALKKKSDLTEITLCSVGD----------VIYAP-VDGVFPAYERVLP 101

Query: 255 C-----SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
                      + +N   L  A + + + +        L+ S   
Sbjct: 102 RGTEPEQCPGVMNINPKYLADACEAIKLATGESHT---LAFSGGN 143


>gi|266619504|ref|ZP_06112439.1| putative DNA polymerase III, beta chain [Clostridium hathewayi DSM
           13479]
 gi|288868990|gb|EFD01289.1| putative DNA polymerase III, beta chain [Clostridium hathewayi DSM
           13479]
          Length = 191

 Score = 49.5 bits (117), Expect = 0.001,   Method: Composition-based stats.
 Identities = 24/161 (14%), Positives = 67/161 (41%), Gaps = 11/161 (6%)

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           +   K +++ T   +    +   +   +  I+ ++  + A A +GHR+++   ++V    
Sbjct: 7   AGEFKRIIDNTKRFVGDGTLSELMRWTYLEIDAKEKVIRATALEGHRISIEYAELVEADE 66

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
                I P          ++ +D+  ++ +S SR+++ +    M     +G++     ++
Sbjct: 67  SFTCYIRPTIP------KITKRDNYAELEVSNSRLYVQVGESIMGYVQPEGQYYPVDKIL 120

Query: 254 ----PCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSL 290
                      + +N   L+ A+D +S   S + +  K+ +
Sbjct: 121 KEYQEKEKMITIGINAKYLKDALDSISTYDSDK-KMAKIDI 160



 Score = 46.4 bits (109), Expect = 0.007,   Method: Composition-based stats.
 Identities = 27/143 (18%), Positives = 52/143 (36%), Gaps = 18/143 (12%)

Query: 253 IPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI---- 308
           I     + +  +  +    +       + R    +L +S+ +L + V    MG       
Sbjct: 54  ISIEYAELVEAD-ESFTCYIRPTIPKITKRDNYAELEVSNSRLYVQVGESIMGYVQPEGQ 112

Query: 309 ----ESMNVYYNECP--MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGK 362
               + +   Y E    + I  N KYL + +D+IS+ +         +  S S V IR  
Sbjct: 113 YYPVDKILKEYQEKEKMITIGINAKYLKDALDSISTYDSDKKMAKIDIYDSVSPVIIRTG 172

Query: 363 DKDSKNNKDNKVNAFYVLMPMRI 385
            K  + N         +++P R+
Sbjct: 173 RKGERENLK-------IVLPARL 188


>gi|218679945|ref|ZP_03527842.1| DNA polymerase III subunit beta [Rhizobium etli CIAT 894]
          Length = 29

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 13/29 (44%), Positives = 22/29 (75%)

Query: 11 LELLGHACRIIERKNTIPVSCHVLLQAND 39
          ++ L H  R++ER+NTIP+  +VLL+A+ 
Sbjct: 1  MKSLNHVHRVVERRNTIPILSNVLLKADG 29


>gi|21702598|gb|AAM75994.1|AF481103_4 unknown [Candidatus Tremblaya princeps]
          Length = 208

 Score = 48.3 bits (114), Expect = 0.002,   Method: Composition-based stats.
 Identities = 29/194 (14%), Positives = 66/194 (34%), Gaps = 13/194 (6%)

Query: 173 AVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNI 232
             + DG R++ A        +   +  VP      + R+L      V++      + +  
Sbjct: 4   CASFDGSRMSCAAAPCRDGWSNDCAA-VPVDTARSVARLLGHG-GIVRMYRLGGVLGIAF 61

Query: 233 ESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSS 292
               ++ RL D    +   V+         +    L   + R +I+   RI+ + + ++ 
Sbjct: 62  GQTEVACRLSDAYSMDAGFVLARRYVFAFCLVRRRLESILRRATILMENRIRDLSILVAP 121

Query: 293 DKLCMTVDNPDMGKAIESM-NVYYN----ECPMDICFNYKYLLEIIDN----ISSDEVVD 343
             L +   N    K  E +     N       + +  N  ++ +++ +    + S  V  
Sbjct: 122 GLLLVRSSNTVREKMEEVIVPAGLNYGMLGSELIV--NADWVRDVLTDACPYLVSFNVCT 179

Query: 344 DEVVFRLDSSNSSV 357
           D +   L    + V
Sbjct: 180 DRLSVMLAGHAAPV 193


>gi|146329940|ref|YP_001210248.1| BcepGomrgp28 [Burkholderia phage BcepGomr]
 gi|145321116|gb|ABP63599.1| BcepGomrgp28 [Burkholderia phage BcepGomr]
          Length = 327

 Score = 47.9 bits (113), Expect = 0.002,   Method: Composition-based stats.
 Identities = 46/308 (14%), Positives = 101/308 (32%), Gaps = 33/308 (10%)

Query: 11  LELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVS 70
           L+ L      + RK+ + V  H  +Q       I      I +   +   +D        
Sbjct: 2   LDALKFVKGAVARKDAVAVLTHFRIQ----NRYIMGYNGLIALGHPLELELDCQPKAA-P 56

Query: 71  AHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSF 130
                +   K ++  +++          ++I  G+    ++      FP    E      
Sbjct: 57  FLKAIEACEKREEQVKMALT----ATGRLSIKCGNFRANVEC-SPDAFPDMGAEGAELPV 111

Query: 131 ELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVA 190
                 L   ++     +A +  + +  GI F          A AT+   +         
Sbjct: 112 SGP---LLPAIKALAPMIAEDASKPWARGILFREGS------AFATNNVVIGQYWH---- 158

Query: 191 QIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS-VRLIDGEFPNY 249
            +     + +P + V E+LRI   K   V +  + + +     + +    +L+   +P+ 
Sbjct: 159 GVNFGFDLNIPEECVRELLRI---KQEPVAIRATATSVTFRYSNGAFIRSQLLSTAWPDV 215

Query: 250 QNVIPCSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIE 309
             V+    +    V+    R   D  + +   R    K+ + S ++  T    D+G ++E
Sbjct: 216 SRVLDRPCN-PAPVDPALFRALDDLRAYVDGSR----KVYMDSGRV-FTHRADDVGASVE 269

Query: 310 SMNVYYNE 317
              + Y  
Sbjct: 270 LPFIQYPG 277


>gi|146319852|ref|YP_001199563.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33]
 gi|145690658|gb|ABP91163.1| DNA polymerase sliding clamp subunit [Streptococcus suis 98HAH33]
          Length = 68

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 14/79 (17%), Positives = 30/79 (37%), Gaps = 14/79 (17%)

Query: 307 AIESMN-VYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKD 365
             E ++ V  +   + I FN  YL+E +   +S     ++V     SS     +   ++ 
Sbjct: 1   MNEELDTVEVSGEDLVISFNPTYLIEALKATTS-----EQVKISFISSVRPFTLIPNNE- 54

Query: 366 SKNNKDNKVNAFYVLMPMR 384
                    +   ++ P+R
Sbjct: 55  -------GEDFIQLVTPVR 66


>gi|330814518|ref|YP_004362693.1| DNA polymerase III subunit beta [Burkholderia gladioli BSR3]
 gi|327374510|gb|AEA65861.1| DNA polymerase III subunit beta [Burkholderia gladioli BSR3]
          Length = 267

 Score = 47.9 bits (113), Expect = 0.003,   Method: Composition-based stats.
 Identities = 21/117 (17%), Positives = 51/117 (43%), Gaps = 4/117 (3%)

Query: 141 VERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP-SII 199
           ++    + A  ++R++LNG+       + +L  VATDG  +         ++ +   ++ 
Sbjct: 48  LKAVQLSAAINDVRHFLNGVHLEATRNETRL--VATDGSMMVAFRAAAANELEQSITTLT 105

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCS 256
           VP + V ++     + D  + + +   R  +    L +    + G FP+Y+ ++   
Sbjct: 106 VPNEVVKQVRPAKGASDV-LTIEIEGWRYTMVFGQLRIGFEPVAGAFPDYRRIVATK 161


>gi|187939822|gb|ACD38962.1| hypothetical protein PACL_0722 [Pseudomonas aeruginosa]
          Length = 224

 Score = 47.2 bits (111), Expect = 0.005,   Method: Composition-based stats.
 Identities = 30/137 (21%), Positives = 56/137 (40%), Gaps = 17/137 (12%)

Query: 134 SSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIA 193
           +    + +      MA  ++RYYLNGI      +   L  +AT+GH + V         A
Sbjct: 5   ARAKAHYLAAVSLFMAHNDVRYYLNGISIEPASQGGVL-LIATNGHHIGVMHDP--DGWA 61

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKV---SLSESRI--------HLNIESLSMSVR-- 240
               II P KA+   L+  ++  + +      +S+S              +  ++     
Sbjct: 62  SNKIIISPSKALVAGLKKRNAGTAFIYERAGVISDSDWPAPDDVKQFAPFDPGTLISAQL 121

Query: 241 -LIDGEFPNYQNVIPCS 256
            L+DG++P+++  IP  
Sbjct: 122 ELVDGKYPDWRRPIPAQ 138


>gi|34764153|ref|ZP_00145021.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
 gi|27886071|gb|EAA23379.1| DNA polymerase III, beta chain [Fusobacterium nucleatum subsp.
           vincentii ATCC 49256]
          Length = 60

 Score = 46.0 bits (108), Expect = 0.009,   Method: Composition-based stats.
 Identities = 23/66 (34%), Positives = 33/66 (50%), Gaps = 13/66 (19%)

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           + I  N KYLLE I NIS ++    E++     SNS+V +  KD D            Y+
Sbjct: 6   LKISLNSKYLLEFIRNISKEK----ELILEFMYSNSAVKVYEKDNDE---------YIYI 52

Query: 380 LMPMRI 385
           LMP+ +
Sbjct: 53  LMPLAL 58


>gi|330949283|gb|EGH49543.1| DNA polymerase III subunit beta [Pseudomonas syringae pv. pisi str.
           1704B]
          Length = 43

 Score = 46.0 bits (108), Expect = 0.010,   Method: Composition-based stats.
 Identities = 17/43 (39%), Positives = 27/43 (62%)

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSV 219
           DGHRLA+  +    + A    +IVPRK + E+ R+L+ +D +V
Sbjct: 1   DGHRLAMCSMSADIEHADRHQVIVPRKGILEMARLLTEQDGTV 43


>gi|283781178|ref|YP_003371933.1| hypothetical protein Psta_3409 [Pirellula staleyi DSM 6068]
 gi|283439631|gb|ADB18073.1| hypothetical protein Psta_3409 [Pirellula staleyi DSM 6068]
          Length = 482

 Score = 46.0 bits (108), Expect = 0.011,   Method: Composition-based stats.
 Identities = 52/369 (14%), Positives = 114/369 (30%), Gaps = 37/369 (10%)

Query: 3   ITVERSDILELLGHACRII-ERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASV 61
           I + R  + + L    +++   +  IP       +A    L I   G    +    P   
Sbjct: 2   IQISR-LLAKQLRSMVKMLFPGRGPIPALA---FRAGQDGLFIDVQGANQALRYHDPQPR 57

Query: 62  DVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES-EFPS 120
           +    + V  ++L D+     +   +   ++  LG          +    +   S + P 
Sbjct: 58  EQQ-HLLVPFNVLEDVQGSKPEPVYLDSRRDGVLGANWEDRGIVRDLEYDAPESSADAPP 116

Query: 121 TKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHR 180
                  +S    + +    +   +     E  RY L  I     E        ATDG +
Sbjct: 117 FPTLPETFSENPPALL--TALREAYETTDAESSRYALASIQVRGREG----VIAATDGRQ 170

Query: 181 LAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVS-LSESRIHLNIESLSMSV 239
           L    +            ++  +      + L + D  V+V    +  +   I   S  +
Sbjct: 171 L----LKQSGFTFGFDEDLLLCQTKLFASKHLPA-DQPVRVGKSGDKMVVFQIGPWSYWL 225

Query: 240 RLIDGEFPNYQNVIPCSNDKELRV-----NCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK 294
            +++G +P+    +P     +  +     +   L + + R+   S    + + L + +  
Sbjct: 226 PVVEGRYPDVDRTVPAPGHSKATLQLGSTDAKFLTENLHRLP--SGTTNRELTLDV-NGH 282

Query: 295 LCMTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDS 352
           + +    PD  +  E +  N       + +C + +YL                    L  
Sbjct: 283 VVLRASAPDTLRPTEMVLRNSSKRGDDLLVCTDRQYLARAAR--------LGFTEIELPD 334

Query: 353 SNSSVFIRG 361
           + S    R 
Sbjct: 335 NTSPAVARD 343


>gi|4572642|emb|CAB40111.1| putative DnaN protein [Thermus thermophilus]
          Length = 49

 Score = 45.6 bits (107), Expect = 0.013,   Method: Composition-based stats.
 Identities = 12/48 (25%), Positives = 24/48 (50%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASG 48
          M ITV +  + + L    RI+  ++  P+  ++ L A +G L +  + 
Sbjct: 1  MNITVPKKLLSDQLSLLERIVPSRSANPLYTYLGLYAEEGALILFGTN 48


>gi|228908421|ref|ZP_04072264.1| DNA polymerase sliding clamp subunit (PCNA ) [Bacillus
           thuringiensis IBL 200]
 gi|228851212|gb|EEM96023.1| DNA polymerase sliding clamp subunit (PCNA ) [Bacillus
           thuringiensis IBL 200]
          Length = 60

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 10/69 (14%), Positives = 30/69 (43%), Gaps = 14/69 (20%)

Query: 316 NECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVN 375
            E  ++I F+ +++++ +  I      ++ +      S   + I G ++ +         
Sbjct: 4   GEKQLNISFDGRFMVDALRAIK-----EETITLSFGGSMRPILIEGGEQSA--------- 49

Query: 376 AFYVLMPMR 384
           A +++ P+R
Sbjct: 50  AVHLISPVR 58


>gi|77414463|ref|ZP_00790613.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515]
 gi|77159473|gb|EAO70634.1| DNA polymerase III, beta subunit [Streptococcus agalactiae 515]
          Length = 64

 Score = 45.2 bits (106), Expect = 0.017,   Method: Composition-based stats.
 Identities = 13/73 (17%), Positives = 25/73 (34%), Gaps = 13/73 (17%)

Query: 312 NVYYNECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKD 371
            V      ++I FN  YL+E +  + S     + V  R  S      +   +        
Sbjct: 3   TVSLKGDSLNISFNPTYLIESLKAVKS-----ETVTIRFISPVRPFTLTPGED------- 50

Query: 372 NKVNAFYVLMPMR 384
              +   ++ P+R
Sbjct: 51  -TEDFIQLITPVR 62


>gi|83596025|gb|ABC25383.1| DNA polymerase IIIb subunit [uncultured marine bacterium Ant39E11]
          Length = 58

 Score = 45.2 bits (106), Expect = 0.018,   Method: Composition-based stats.
 Identities = 14/66 (21%), Positives = 36/66 (54%), Gaps = 10/66 (15%)

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           M+I FN +++ E+++N++S     D+VV  L + N +  +  +     +  ++  +   +
Sbjct: 1   MEIGFNSRFIAEMLNNLTS-----DDVVMELSAPNRAGLLFPE-----SGLEDGESILML 50

Query: 380 LMPMRI 385
           +MP+ +
Sbjct: 51  VMPVML 56


>gi|39879|emb|CAA31271.1| dnaG protein (AA 1 - 30) [Bacillus subtilis]
          Length = 30

 Score = 44.8 bits (105), Expect = 0.019,   Method: Composition-based stats.
 Identities = 7/30 (23%), Positives = 17/30 (56%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVS 30
          MK T+++  ++E +    + +  + TIP+ 
Sbjct: 1  MKFTIQKDRLVESVQDVLKAVSSRTTIPIL 30


>gi|62362365|ref|YP_224230.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC]
 gi|58219987|gb|AAW67499.1| putative DNA polymerase III beta subunit [Listonella phage phiHSIC]
          Length = 191

 Score = 44.1 bits (103), Expect = 0.034,   Method: Composition-based stats.
 Identities = 31/113 (27%), Positives = 55/113 (48%), Gaps = 12/113 (10%)

Query: 151 EEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILR 210
            ++R+Y NG+  ++N+  ++   VATDG+ +AV    I +      + I+  K +  +  
Sbjct: 27  NDVRFYFNGVALYVNDGVIE-SVVATDGYSMAV----IGSTELNGEASIIANKDIDTLCN 81

Query: 211 ILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRV 263
            L++ D  VKV+       + I    +   L+DG +PN + VIP    K   V
Sbjct: 82  ALATSD-QVKVNWP----VIEIGDYKI--PLVDGRYPNVKRVIPTIERKPADV 127


>gi|75765149|ref|ZP_00744418.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
 gi|74487361|gb|EAO51308.1| DNA polymerase III, beta chain [Bacillus thuringiensis serovar
          israelensis ATCC 35646]
          Length = 52

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 9/49 (18%), Positives = 16/49 (32%)

Query: 1  MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGP 49
          M+  V      + L    + I  K+ IP+            + + AS  
Sbjct: 1  MEFIVNHKQFTQALSEVNKAISTKSLIPILSRYKNNCRSSGITLIASNS 49


>gi|108802380|ref|YP_642576.1| hypothetical protein Mmcs_5420 [Mycobacterium sp. MCS]
 gi|119855399|ref|YP_936002.1| hypothetical protein Mkms_6015 [Mycobacterium sp. KMS]
 gi|108772799|gb|ABG11520.1| hypothetical protein Mmcs_5420 [Mycobacterium sp. MCS]
 gi|119698116|gb|ABL95187.1| conserved hypothetical protein [Mycobacterium sp. KMS]
          Length = 224

 Score = 44.1 bits (103), Expect = 0.037,   Method: Composition-based stats.
 Identities = 23/108 (21%), Positives = 50/108 (46%), Gaps = 7/108 (6%)

Query: 157 LNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI----L 212
           L  +         +L AVATD   L V+ V    +   M       KA+ ++ +      
Sbjct: 31  LEAVRLEF--GSGQLVAVATDRFVLGVSRVAYTGEAFTMMLAGSDAKALVKMAKTGKRDE 88

Query: 213 SSKDSSVKVSLSESRIHLNIESLS-MSVRLIDGEFPNYQNVIPCSNDK 259
           S+++ +V+V  + +++     +   M+VR +D +FP +++++P    +
Sbjct: 89  SAREVTVEVVDAGAQVTFRFSTGEAMTVRGLDVQFPKWRHLLPSDTSR 136


>gi|213609170|ref|ZP_03368996.1| DNA polymerase III subunit beta [Salmonella enterica subsp.
           enterica serovar Typhi str. E98-2068]
          Length = 44

 Score = 43.7 bits (102), Expect = 0.054,   Method: Composition-based stats.
 Identities = 16/58 (27%), Positives = 26/58 (44%), Gaps = 14/58 (24%)

Query: 328 YLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           Y+L++++ +       + V   L  S SSV I               +A YV+MPMR+
Sbjct: 1   YVLDVLNALKC-----ETVRIMLTDSVSSVQIEDA---------ASQSAAYVVMPMRL 44


>gi|289642845|ref|ZP_06474981.1| hypothetical protein FsymDgDRAFT_2239 [Frankia symbiont of Datisca
           glomerata]
 gi|289507322|gb|EFD28285.1| hypothetical protein FsymDgDRAFT_2239 [Frankia symbiont of Datisca
           glomerata]
          Length = 250

 Score = 43.3 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/87 (18%), Positives = 40/87 (45%), Gaps = 2/87 (2%)

Query: 126 YVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAE 185
               + +++  L +++  T  A   +     L  +  H+  +  +L AVATD +R+    
Sbjct: 19  PDAVWSVSAVDLFDVLTNTRLAAYDDPTLPALCAVRLHV--DGGRLHAVATDRYRIHRDH 76

Query: 186 VDIVAQIAKMPSIIVPRKAVGEILRIL 212
            ++ A  +  P++     A+ ++ R++
Sbjct: 77  AELTAPASTSPAVGPVLLALPDVTRLV 103


>gi|497645|gb|AAA57069.1| DNA polymerase III beta subunit [Mycoplasma genitalium]
          Length = 98

 Score = 43.3 bits (101), Expect = 0.073,   Method: Composition-based stats.
 Identities = 16/95 (16%), Positives = 41/95 (43%), Gaps = 6/95 (6%)

Query: 276 SIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNV-YYNECPMDICFNYKYLLEIID 334
           ++  + R     + ++S +L +     ++G ++E ++   +    ++I FN   LL+ I+
Sbjct: 3   TLAQNERTFLCDMQINSSELKIRAIVNNIGNSLEEISCLKFEGYKLNISFNPSSLLDHIE 62

Query: 335 NISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNN 369
           +  S+     E+ F    ++    I  K +     
Sbjct: 63  SFESN-----EINFDFQGNSKYFLITSKSEPELKQ 92


>gi|24113244|ref|NP_707754.1| hypothetical protein SF1906 [Shigella flexneri 2a str. 301]
 gi|30063313|ref|NP_837484.1| hypothetical protein S1992 [Shigella flexneri 2a str. 2457T]
 gi|188493400|ref|ZP_03000670.1| hypothetical bacteriophage protein [Escherichia coli 53638]
 gi|188493567|ref|ZP_03000837.1| hypothetical bacteriophage protein [Escherichia coli 53638]
 gi|24052244|gb|AAN43461.1| hypothetical bacteriophage protein [Shigella flexneri 2a str. 301]
 gi|30041565|gb|AAP17293.1| hypothetical bacteriophage protein [Shigella flexneri 2a str.
           2457T]
 gi|188488599|gb|EDU63702.1| hypothetical bacteriophage protein [Escherichia coli 53638]
 gi|188488766|gb|EDU63869.1| hypothetical bacteriophage protein [Escherichia coli 53638]
 gi|281601305|gb|ADA74289.1| Hypothetical bacteriophage protein [Shigella flexneri 2002017]
 gi|313650067|gb|EFS14480.1| DNA polymerase III beta subunit, central domain protein [Shigella
           flexneri 2a str. 2457T]
 gi|332756001|gb|EGJ86354.1| DNA polymerase III beta subunit, central domain protein [Shigella
           flexneri 4343-70]
 gi|332757294|gb|EGJ87631.1| DNA polymerase III beta subunit, central domain protein [Shigella
           flexneri 2747-71]
 gi|332757414|gb|EGJ87749.1| DNA polymerase III beta subunit, central domain protein [Shigella
           flexneri K-671]
 gi|332766756|gb|EGJ96959.1| DNA polymerase III beta subunit, central domain protein [Shigella
           flexneri 2930-71]
 gi|333017647|gb|EGK36959.1| DNA polymerase III beta subunit, central domain protein [Shigella
           flexneri K-304]
          Length = 189

 Score = 42.1 bits (98), Expect = 0.13,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192
           +   L+       A  ++RYYLNG   HI  + ++    AT+G    R+A         I
Sbjct: 3   IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGSVALRMAHGIRTKKNII 56

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
            +     VP KA  E   ++ SK+  + V   + +  L+I  +    +L+DG FP+   +
Sbjct: 57  VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITGI----KLVDGCFPDLDRI 108

Query: 253 IPCSNDK 259
           IP   D+
Sbjct: 109 IPKKFDR 115


>gi|149731497|ref|XP_001499014.1| PREDICTED: large subunit GTPase 1 homolog (S. cerevisiae) [Equus
           caballus]
          Length = 659

 Score = 42.1 bits (98), Expect = 0.14,   Method: Composition-based stats.
 Identities = 21/109 (19%), Positives = 44/109 (40%), Gaps = 16/109 (14%)

Query: 206 GEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNC 265
            ++ R++   D  V++  + + +    E L   V+ IDG             +  + +N 
Sbjct: 165 RQLWRVIERSDIVVQIVDARNPLLFRCEDLERYVKEIDG-----------EKENVILINK 213

Query: 266 TNLRQAVDRVSIMSSVRIQAVKLSL---SSDKLCMTVDNPDM--GKAIE 309
            +L  A  R +  +    Q VK+      ++ + +T D+ +   G A E
Sbjct: 214 ADLLTAEQRSAWATHFETQDVKVIFWSALAEAVQLTGDSKEQVNGDAEE 262


>gi|323174621|gb|EFZ60242.1| DNA polymerase III beta subunit, central domain protein
           [Escherichia coli LT-68]
          Length = 189

 Score = 41.8 bits (97), Expect = 0.17,   Method: Composition-based stats.
 Identities = 34/127 (26%), Positives = 57/127 (44%), Gaps = 17/127 (13%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192
           +   L+       A  ++RYYLNG   HI  + ++    AT+G    R+A         I
Sbjct: 3   IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGSVALRMAHGIRTKKNII 56

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
            +     VP KA  E   ++ SK+  + V   + +  L+I  +    +L+DG FP+   +
Sbjct: 57  VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITGI----KLVDGCFPDLNRI 108

Query: 253 IPCSNDK 259
           IP   D+
Sbjct: 109 IPKKFDR 115


>gi|261403678|ref|YP_003247902.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus
           vulcanius M7]
 gi|261370671|gb|ACX73420.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus
           vulcanius M7]
          Length = 242

 Score = 41.4 bits (96), Expect = 0.23,   Method: Composition-based stats.
 Identities = 36/199 (18%), Positives = 80/199 (40%), Gaps = 24/199 (12%)

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDI-----VAQIAKMPSIIVPRKAVGEILRILSS 214
           I F ++EE +K  A A D   +A+  ++I         A    I +  +A  +++    S
Sbjct: 21  ICFEVSEEGIK--ASAMDPSHVALVSLEIPSLAFEEFTADEHEIGIDLEAFKKVMNRAKS 78

Query: 215 KDSSVKVSLSE--SRIHLNIESL---SMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           KD  + + L E  +++++  E+      S+ L+D    +   V        + +     +
Sbjct: 79  KDKLI-LELDEEKNKLNIIFENTGKRKFSLALLDLS-ASSVKVPDIEYPNVVVIKGEAFK 136

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD------NPDMGKAIESMNVYYNECPMDIC 323
           +A+    + S      V L + +DK  +         + +  K   ++            
Sbjct: 137 EALKDADLFSD----YVILKVENDKFLIQAKGDLNDFSAEFEKDDAAIVNLEVGEEAKSA 192

Query: 324 FNYKYLLEIIDNISSDEVV 342
           FN  YL++++  +SS +++
Sbjct: 193 FNLDYLMDMVKGVSSGDII 211


>gi|323518471|gb|ADX92852.1| hypothetical protein ABTW07_2428 [Acinetobacter baumannii
           TCDC-AB0715]
          Length = 182

 Score = 41.4 bits (96), Expect = 0.27,   Method: Composition-based stats.
 Identities = 28/131 (21%), Positives = 52/131 (39%), Gaps = 17/131 (12%)

Query: 139 NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSI 198
             ++ T    A  E+R+YL G+      + +     AT+GH      +   A   K   +
Sbjct: 12  KHLQATSLFAAHREVRFYLMGVLVK---DGV---MAATNGH----CALICDAPEVKDLEV 61

Query: 199 IVPRKAVGEILRILSSKDSSVKVS---LSESRIHLNIESLSM-SVRLIDGEFPNYQNVI- 253
           I+P + V   ++ + +      ++   + +    L+ E+      R IDG+FP+   V  
Sbjct: 62  IIPIEIVKSFIKKVGNNPKVKTITLSQIDDEFWLLDYENGMFEFFRPIDGKFPDISRVDI 121

Query: 254 --PCSNDKELR 262
             P    KE  
Sbjct: 122 PKPTEPPKEFV 132


>gi|308095429|ref|ZP_07663277.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
 gi|308087827|gb|EFO37522.1| DNA polymerase III, beta subunit [Vibrio parahaemolyticus Peru-466]
          Length = 43

 Score = 41.0 bits (95), Expect = 0.29,   Method: Composition-based stats.
 Identities = 14/57 (24%), Positives = 28/57 (49%), Gaps = 14/57 (24%)

Query: 329 LLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +L++++ +  ++     V   +  +N+S  I   D DS         A YV+MP+R+
Sbjct: 1   MLDVLNTLRCEK-----VQVSMSDANASALIENADDDS---------AMYVVMPIRL 43


>gi|331674171|ref|ZP_08374931.1| hypothetical bacteriophage protein [Escherichia coli TA280]
 gi|331068265|gb|EGI39660.1| hypothetical bacteriophage protein [Escherichia coli TA280]
          Length = 189

 Score = 41.0 bits (95), Expect = 0.30,   Method: Composition-based stats.
 Identities = 34/126 (26%), Positives = 57/126 (45%), Gaps = 17/126 (13%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192
           +   L+       A  ++RYYLNG   HI  + ++    AT+G    R+          I
Sbjct: 3   IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGFVALRMTHGIRTKKNII 56

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
            +     VP KA  E   ++ SK+  + V   + +  L+I S+    +L+DG FP+ + +
Sbjct: 57  VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITSI----KLVDGCFPDLERI 108

Query: 253 IPCSND 258
           IP   D
Sbjct: 109 IPKKFD 114


>gi|301029453|ref|ZP_07192540.1| DNA polymerase III beta subunit, central domain protein
           [Escherichia coli MS 196-1]
 gi|299877656|gb|EFI85867.1| DNA polymerase III beta subunit, central domain protein
           [Escherichia coli MS 196-1]
          Length = 189

 Score = 40.2 bits (93), Expect = 0.49,   Method: Composition-based stats.
 Identities = 33/126 (26%), Positives = 56/126 (44%), Gaps = 17/126 (13%)

Query: 136 VLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGH---RLAVAEVDIVAQI 192
           +   L+       A  ++RYYLNG   HI  + ++    AT+G    R+          I
Sbjct: 3   IQSKLIRAALVCAAKNDVRYYLNG--LHITPKHIE----ATNGSVALRMTHGIRTKKNII 56

Query: 193 AKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNV 252
            +     VP KA  E   ++ SK+  + V   + +  L+I  +    +L+DG FP+ + +
Sbjct: 57  VQFEGG-VPAKA--ETTELIFSKE-PIAVHRDQFQRRLSITGI----KLVDGCFPDLERI 108

Query: 253 IPCSND 258
           IP   D
Sbjct: 109 IPKKFD 114


>gi|296123289|ref|YP_003631067.1| hypothetical protein Plim_3046 [Planctomyces limnophilus DSM 3776]
 gi|296015629|gb|ADG68868.1| hypothetical protein Plim_3046 [Planctomyces limnophilus DSM 3776]
          Length = 415

 Score = 39.8 bits (92), Expect = 0.74,   Method: Composition-based stats.
 Identities = 46/341 (13%), Positives = 117/341 (34%), Gaps = 67/341 (19%)

Query: 66  SITVSAHLLYDIVRKL--QDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKE 123
            +TVSA    +++R+    D   ++   + ++          +++ +  F         +
Sbjct: 74  RVTVSA----ELLRECQGSDAEVVTLEIDQDIV--------KASWSVSGFAVEREFPVFD 121

Query: 124 EEYVYSFELASSVLK------NLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATD 177
               + F+             + + +      +   RY LN +         +     TD
Sbjct: 122 APDEHLFQHPREYFSCPPEFLSALRQVMAVRDSASTRYALNCVQL----SGSRQQLAGTD 177

Query: 178 GHRLAV---AEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES 234
             +L +    ++     +    + ++      E+ R+      +V++  +E  + L +  
Sbjct: 178 SQKLLIHRGIQLPWPEDLLVQGTDLLEA---LELQRV-----KTVRMGRTEHDLVLQLGH 229

Query: 235 LSMSVRL-IDGEFPNYQNVIP--CSNDKELR---VNCTNLRQAVDRVSIMSSVR----IQ 284
            ++ ++L  +  +P    V+P    +   L    ++ T L + + R+    S R     Q
Sbjct: 230 WTVGLKLNTESHYPPVDRVVPWLSDDATRLELHPLDATRLEELLHRMLETCSSRLPTMHQ 289

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESM--NVYYNECPMDICFNYKYLLEIIDNISSDEVV 342
            + + L+ D   +        +A E        +  P  +C   ++L+  +      E+ 
Sbjct: 290 PLTVDLTGDVPIVRCRTNHSPRATEIRLSRSSRHGLPGKVCLETRFLVSAL------EMG 343

Query: 343 DDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPM 383
             ++ F      S V +            ++    Y+LMP+
Sbjct: 344 FQQLAFHKSD--SPVRL------------DQHQRIYILMPL 370


>gi|169835543|ref|ZP_02868731.1| hypothetical protein cdivTM_00218 [candidate division TM7
           single-cell isolate TM7a]
          Length = 71

 Score = 39.4 bits (91), Expect = 0.88,   Method: Composition-based stats.
 Identities = 14/71 (19%), Positives = 27/71 (38%), Gaps = 4/71 (5%)

Query: 49  PEIEITGAIPASVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNF 108
            E+ I   I A V+  G I +   L+ + ++++ D          E   ++ I    +N 
Sbjct: 1   MELSINTEIEAQVEEDGRIVIKHKLIEEFLKQISDDKITLI----EESGKLIIQASSTNT 56

Query: 109 YLQSFPESEFP 119
               +    FP
Sbjct: 57  EFSLYNAENFP 67


>gi|255715685|ref|XP_002554124.1| KLTH0E14828p [Lachancea thermotolerans]
 gi|238935506|emb|CAR23687.1| KLTH0E14828p [Lachancea thermotolerans]
          Length = 258

 Score = 39.4 bits (91), Expect = 0.93,   Method: Composition-based stats.
 Identities = 43/222 (19%), Positives = 89/222 (40%), Gaps = 33/222 (14%)

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMP------SIIVPRKAVGEILRILSS 214
             + N  +  + A A D  R+ +  + I  +  +        ++ V   ++ +ILR  ++
Sbjct: 25  LVNFNCNEHGIAAQAVDDSRVLLVSLSIGTESFQEFRCDRGVTLGVDLSSLSKILRCGNN 84

Query: 215 KDSSVKVSLS-ESRIHLNIESL------SMSVRL--IDGEFPNYQNVIPCSNDKELRVNC 265
            D+   ++      + L  E          S++L  ID +F + + +     D  + +  
Sbjct: 85  NDNLTLIADDTPDSVLLLFEDTKKDRISEYSLKLMDIDADFLDIEGM---EYDTVITMPS 141

Query: 266 TNLRQAVDRVSIMSS-----VRIQAVKL----SLSSDKLCMTVDNPDMGKAIESMNVYYN 316
               + V  ++ +S      V    VK      + S  + +     DM K  ES+ V  +
Sbjct: 142 AEFAKVVRDLNQLSDSLNILVTKDTVKFVAEGDIGSGSVIVKPH-TDMDKPQESVKVELD 200

Query: 317 ECPMDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVF 358
             P+D+ F  KYLL+II        + D++  +L +   ++F
Sbjct: 201 -KPVDLTFGSKYLLDIIKGAG----LSDQITIKLSAETPALF 237


>gi|225158796|ref|ZP_03725113.1| hypothetical protein ObacDRAFT_8222 [Opitutaceae bacterium TAV2]
 gi|224802631|gb|EEG20886.1| hypothetical protein ObacDRAFT_8222 [Opitutaceae bacterium TAV2]
          Length = 230

 Score = 39.4 bits (91), Expect = 1.0,   Method: Composition-based stats.
 Identities = 27/159 (16%), Positives = 60/159 (37%), Gaps = 29/159 (18%)

Query: 149 ATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVG-- 206
           + +E RY LN +     ++  K+  VATDG R+A+    +   + +  S  +P   +   
Sbjct: 19  SHDECRYILNVVRVE-RQDAKKILLVATDGKRIAIIRHQVSDNLPEFESFSIPLPLIDRA 77

Query: 207 ---------EILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDG------------E 245
                    E L      D     + +     L  +  ++S+ + +G            +
Sbjct: 78  DITIKARAYETLAYELEDDEIPSYAAANPDAVLTFDGKTVSMTMPNGITFLATSGKELKQ 137

Query: 246 FPNYQNVIP-----CSNDKELRVNCTNLRQAVDRVSIMS 279
           FP +++ +       +N   + V+   +R      +++S
Sbjct: 138 FPFWKSTLADLDKGQTNKSVISVSGFLMRDFCRAAAMLS 176


>gi|237710660|ref|ZP_04541141.1| predicted protein [Bacteroides sp. 9_1_42FAA]
 gi|229455382|gb|EEO61103.1| predicted protein [Bacteroides sp. 9_1_42FAA]
          Length = 576

 Score = 39.1 bits (90), Expect = 1.1,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 82/232 (35%), Gaps = 30/232 (12%)

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVL--KNLVERTHFAMATEEIRYYLNGIFFHINE 166
            L    ++      + E   +   +  +   K  +  T      + +R   N I+     
Sbjct: 91  KLIGTKQANKTRFTKIEERENIVCSFDIWITKEHLNITKLVT-KDSLRPAFNYIYL---- 145

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILR-----ILSSKDSSV 219
           +  K   VA+DG  L    V I     +     + +  K + E++      + + +  ++
Sbjct: 146 DPYKSALVASDGRTLKEYPVIIETSGLLPDSLKLFINPKHLKEMVGRCSVCVCNQEGGNI 205

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM 278
               ++ +     +          G FPNY+ V P  S D  +++  + L+     V  +
Sbjct: 206 TEITNDKKQTFVCD--------FAGYFPNYRLVYPNLSKDGFIKIQKSELKAVASFVKEI 257

Query: 279 SSVRIQ---AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC---PMDICF 324
           +    +   +++     +K+ ++ ++ D     + + V   +     + + F
Sbjct: 258 AKRNKKSGFSLRTIAGENKVYLSYNDADS-NGHKELCVTLEKAALIDIKLGF 308


>gi|237720969|ref|ZP_04551450.1| predicted protein [Bacteroides sp. 2_2_4]
 gi|229449804|gb|EEO55595.1| predicted protein [Bacteroides sp. 2_2_4]
          Length = 576

 Score = 39.1 bits (90), Expect = 1.3,   Method: Composition-based stats.
 Identities = 32/232 (13%), Positives = 82/232 (35%), Gaps = 30/232 (12%)

Query: 109 YLQSFPESEFPSTKEEEYVYSFELASSVL--KNLVERTHFAMATEEIRYYLNGIFFHINE 166
            L    ++      + E   +   +  +   K  +  T      + +R   N I+     
Sbjct: 91  KLIGTKQANKTRFTKIEERENIVCSFDIWITKEHLNITKLVT-KDSLRPAFNYIYL---- 145

Query: 167 EDLKLCAVATDGHRLAVAEVDIVAQ--IAKMPSIIVPRKAVGEILR-----ILSSKDSSV 219
           +  K   VA+DG  L    V I     +     + +  K + E++      + + +  ++
Sbjct: 146 DPYKSALVASDGRTLKEYPVIIETSGLLPDSLKLFINPKHLKEMVGRCSVCVCNQEGGNI 205

Query: 220 KVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIM 278
               ++ +     +          G FPNY+ V P  S D  +++  + L+     V  +
Sbjct: 206 TEITNDKKQTFVCD--------FAGYFPNYRLVYPNLSKDGFIKIQKSELKAVASFVKEI 257

Query: 279 SSVRIQ---AVKLSLSSDKLCMTVDNPDMGKAIESMNVYYNEC---PMDICF 324
           +    +   +++     +K+ ++ ++ D     + + V   +     + + F
Sbjct: 258 AKRNKKSGFSLRTIAGENKVYLSYNDADS-NGHKELCVTLEKAALIDIKLGF 308


>gi|330903339|gb|EGH33911.1| hypothetical protein PSYJA_35327 [Pseudomonas syringae pv.
          japonica str. M301072PT]
          Length = 22

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 6/22 (27%), Positives = 12/22 (54%)

Query: 1  MKITVERSDILELLGHACRIIE 22
          M  T++R  +L+ L     ++E
Sbjct: 1  MHFTIQREALLKPLQLVAGVVE 22


>gi|119469689|ref|ZP_01612558.1| hypothetical protein ATW7_15804 [Alteromonadales bacterium TW-7]
 gi|119446936|gb|EAW28207.1| hypothetical protein ATW7_15804 [Alteromonadales bacterium TW-7]
          Length = 835

 Score = 38.7 bits (89), Expect = 1.4,   Method: Composition-based stats.
 Identities = 23/120 (19%), Positives = 40/120 (33%), Gaps = 15/120 (12%)

Query: 267 NLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAI-ESMNVYYNECPMDICFN 325
             R+  DR+ I+S       +     +       N ++ +A+  S+ +        I FN
Sbjct: 97  EFRKYFDRIDIISKTP----RYKFDENSAISKASNANISEAVLASIKIEKE-EDGKIAFN 151

Query: 326 YK--YLLEII-DNISSDEVVDDEVVFRLD----SSNSSVFIRGKDKDSKNNKDNKVNAFY 378
               +L E +     +    D     R       S  S  I  K +   NN D  V+  +
Sbjct: 152 VNKLFLSEALHKVSPTINPADKNAKKRFKVGKLDSKKSRII--KQRPYPNNLDVVVDYVF 209


>gi|329576318|gb|EGG57833.1| hypothetical protein HMPREF9520_01574 [Enterococcus faecalis
           TX1467]
          Length = 54

 Score = 38.7 bits (89), Expect = 1.5,   Method: Composition-based stats.
 Identities = 10/65 (15%), Positives = 23/65 (35%), Gaps = 13/65 (20%)

Query: 320 MDICFNYKYLLEIIDNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDSKNNKDNKVNAFYV 379
           MDI FN  Y+ + +         D  +  +  S      +   + +        ++   +
Sbjct: 1   MDISFNPDYMKDALRAFG-----DMNITVKFLSPIRPFTLEPTETE--------LDFIQL 47

Query: 380 LMPMR 384
           + P+R
Sbjct: 48  ITPVR 52


>gi|118396790|ref|XP_001030732.1| hypothetical protein TTHERM_01026330 [Tetrahymena thermophila]
 gi|89285045|gb|EAR83069.1| hypothetical protein TTHERM_01026330 [Tetrahymena thermophila SB210]
          Length = 1748

 Score = 38.3 bits (88), Expect = 1.9,   Method: Composition-based stats.
 Identities = 21/141 (14%), Positives = 49/141 (34%), Gaps = 18/141 (12%)

Query: 199  IVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIES----LSMSVRLIDGEFPNYQNVIP 254
            I+ +      ++       S + ++++S+   N         +     +  + +   +IP
Sbjct: 1113 IIQKLTNLNQVKRRKDTSDSFECNINQSQNDFNFNDSQAQFQVQSVKNEENYKSLMQIIP 1172

Query: 255  CSNDKELR----VNCTNLRQAV------DRVSIMS----SVRIQAVKLSLSSDKLCMTVD 300
             + + E      +   NL+  +        VS++S    S     + L L +      V 
Sbjct: 1173 ENKETESTKNSDIQQQNLKDKILDQTRYKSVSVVSYDHFSKNNNKINLHLPNQNAFFDVQ 1232

Query: 301  NPDMGKAIESMNVYYNECPMD 321
            N D+ K  E +N    +   +
Sbjct: 1233 NNDLLKQNEDLNCTIEDEDEE 1253


>gi|189426934|ref|YP_001950033.1| beta clamp domain-like protein [Ralstonia phage RSL1]
 gi|189233246|dbj|BAG41603.1| beta clamp domain-like protein [Ralstonia phage RSL1]
          Length = 355

 Score = 38.3 bits (88), Expect = 2.1,   Method: Composition-based stats.
 Identities = 52/310 (16%), Positives = 117/310 (37%), Gaps = 32/310 (10%)

Query: 1   MKITVERSDILELLGHACRIIERKNTIPVSCHVLLQANDGLLEIKASGPEIE-ITGAIPA 59
           MK  VE S I E +  A  +       P++  + LQA D  L + +S  E+      +P 
Sbjct: 1   MKAQVECSIIQEAVRIASLLAP-----PMTGTITLQATDKRLYLHSS-SELSRCRVQLPG 54

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFP 119
           +V    +  +    L D VR               +   + +  G     L +    E  
Sbjct: 55  TVQGDATFALPISALSDSVRG------RKEVTLELVKGVLTLVDGRYKASLSTVDALEIE 108

Query: 120 STKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHIN-EEDLKLCAVATDG 178
             K EE    ++L++ +   L+ +T  ++  +       G F  +  +   K   VA   
Sbjct: 109 DFKPEEEAKKWKLSADLSTWLL-KTVTSIGLKASG----GSFMPLAIQAGAKSTFVAC-- 161

Query: 179 HRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMS 238
           +  A         +      ++P   +  +L +    D    + L++S + ++ + + ++
Sbjct: 162 YDQAHMAFARSTDVQGDLQTVLPFDTMRAVLDVFKGVD--CVLHLTKSSLWVSNKMVQVA 219

Query: 239 VRLI--DG-EFPNYQNVIPCSND------KELRVNCTNLRQAVDRVSIMSSVRIQAVKLS 289
           + L   DG E  + ++V+  + +       ++     ++   +D    +++     + ++
Sbjct: 220 LSLPSADGDEVISIESVLEKAKEAVKADGSKVTAVKADVMAFLDNARAVATKERPELGIT 279

Query: 290 LSSDKLCMTV 299
             + KL M+V
Sbjct: 280 AKNGKLQMSV 289


>gi|11497947|ref|NP_069171.1| DNA polymerase sliding clamp [Archaeoglobus fulgidus DSM 4304]
 gi|13124400|sp|O29912|PCNA_ARCFU RecName: Full=DNA polymerase sliding clamp; AltName:
           Full=Proliferating cell nuclear antigen homolog;
           Short=PCNA
 gi|42543622|pdb|1RWZ|A Chain A, Crystal Structure Of Proliferating Cell Nuclear Antigen
           (Pcna) From A. Fulgidus
 gi|42543623|pdb|1RXM|A Chain A, C-Terminal Region Of Fen-1 Bound To A. Fulgidus Pcna
 gi|42543636|pdb|1RXZ|A Chain A, C-Terminal Region Of A. Fulgidus Fen-1 Complexed With A.
           Fulgidus Pcna
 gi|321159921|pdb|3P83|A Chain A, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|321159922|pdb|3P83|B Chain B, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|321159923|pdb|3P83|C Chain C, Structure Of The Pcna:rnase Hii Complex From Archaeoglobus
           Fulgidus.
 gi|2650299|gb|AAB90899.1| proliferating-cell nuclear antigen (pol30) [Archaeoglobus fulgidus
           DSM 4304]
          Length = 245

 Score = 37.9 bits (87), Expect = 2.5,   Method: Composition-based stats.
 Identities = 36/193 (18%), Positives = 70/193 (36%), Gaps = 16/193 (8%)

Query: 161 FFHINEEDLKLCAVATDGHRLAVAEVDIVAQ------IAKMPSIIVPRKAVGEILRILSS 214
             H  E+ L   AV  D   +A+  VDI         I +  +I V    + +I + +S+
Sbjct: 26  RIHFLEKGLHSRAV--DPANVAMVIVDIPKDSFEVYNIDEEKTIGVDMDRIFDISKSIST 83

Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVD 273
           KD    +   ES + +   S+   V LID      +  IP      ++ ++    ++A+ 
Sbjct: 84  KDLVELIVEDESTLKVKFGSVEYKVALIDPSAIRKEPRIPELELPAKIVMDAGEFKKAIA 143

Query: 274 RVSIMSSVRIQAVKLSLSSDKLCMTVD---NPDMGKAIESMNVYYNECPMDICFNYKYLL 330
               +S      V      +   +      +  +    E+  + +N       F+  YL 
Sbjct: 144 AADKISDQ----VIFRSDKEGFRIEAKGDVDSIVFHMTETELIEFNGGEARSMFSVDYLK 199

Query: 331 EIIDNISSDEVVD 343
           E      S +++ 
Sbjct: 200 EFCKVAGSGDLLT 212


>gi|48478388|ref|YP_024094.1| DNA polymerase sliding clamp [Picrophilus torridus DSM 9790]
 gi|73921629|sp|Q6KZF1|PCNA_PICTO RecName: Full=DNA polymerase sliding clamp; AltName:
           Full=Proliferating cell nuclear antigen homolog;
           Short=PCNA
 gi|48431036|gb|AAT43901.1| DNA polymerase sliding clamp [Picrophilus torridus DSM 9790]
          Length = 245

 Score = 37.9 bits (87), Expect = 2.7,   Method: Composition-based stats.
 Identities = 33/215 (15%), Positives = 89/215 (41%), Gaps = 23/215 (10%)

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRI-----LSS 214
           + F +    + + AV  D   +A+  +DI         +  P +   ++ ++     L+S
Sbjct: 25  VKFKLEPNGISVTAV--DPAHVAMISLDIPKNAFSEYDLDAPDEIAVDLDKVKSVIRLAS 82

Query: 215 KDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
            + ++ +S    ++   I ++  S+ L+D        V   ++D  + ++ ++L + +  
Sbjct: 83  SNDTIVISKDRDKLRFEIGTIIKSIALLDNNSVTTPRVPQINSDDYVILSKSDLEKGLRA 142

Query: 275 VSIMSSVRIQAVKLSLSSDKLCM-TVDNPDMGKA---IESMNVYYNECPMDICFNYKYLL 330
              +S     A++L+L+ +     +  + D  +     + +       P+   +  +YLL
Sbjct: 143 AEDVSD----AIRLTLTPESFSAKSTSDSDESEMLLPKDMLKDISCSQPIKSSYPLEYLL 198

Query: 331 EIIDNISSDEVVD--------DEVVFRLDSSNSSV 357
           +++ +ISS+E +           + F  +S    +
Sbjct: 199 KLVKSISSNEDIKISFKSDYPLSIEFSFNSETEPI 233


>gi|327401267|ref|YP_004342106.1| DNA polymerase sliding clamp [Archaeoglobus veneficus SNP6]
 gi|327316775|gb|AEA47391.1| DNA polymerase sliding clamp [Archaeoglobus veneficus SNP6]
          Length = 245

 Score = 37.5 bits (86), Expect = 3.4,   Method: Composition-based stats.
 Identities = 27/178 (15%), Positives = 59/178 (33%), Gaps = 15/178 (8%)

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES--- 116
            VD   +I V  + ++DI + ++ G  +    E+E  T + I  G   + +     S   
Sbjct: 60  KVDEEKTIGVDVNRVFDISKAIKSGELVEMKVEDE--TSLMIKFGSVQYSVALIDPSAIR 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           + P     E      L +   K  +            R    G +     +         
Sbjct: 118 KEPKVPSLELPAKIVLDAGEFKKAINAADKISDHVVFRSDETGFYIEAEGD--------V 169

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESR-IHLNIE 233
           D     ++E +++     +   +   + + E ++   S D  + + L  +  + L  E
Sbjct: 170 DRIEFHMSEAELIEFNRGVARSMFSIEYLKEFVKTAGSGDV-LTIYLGNNYPVRLVFE 226


>gi|269941599|emb|CBI50005.1| phage protein [Staphylococcus aureus subsp. aureus TW20]
          Length = 226

 Score = 37.5 bits (86), Expect = 3.6,   Method: Composition-based stats.
 Identities = 26/154 (16%), Positives = 59/154 (38%), Gaps = 21/154 (13%)

Query: 245 EFPNYQNVIPC--SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDK----LCMT 298
           ++P    +IP   + + ++ +N   +   +  +     +++  + L +  ++    +  +
Sbjct: 79  QYPETSRIIPESENANNKIIINHDEIDLLIAILKAYKGIKLDRLTLIIDKNQEYYLMNYS 138

Query: 299 VDNPDMGKAIESMNVYYNECPM--------DICFNYKYLLEIIDNISSDEVVDDEVVFRL 350
             N +  + +E +N+ Y    +         I FN  YLL   + +  D    D      
Sbjct: 139 DFNFNNNELLEHLNLNYKLKNINLSDKPVHKITFNVSYLLNAFEYLKDDVKTQDL----- 193

Query: 351 DSSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMR 384
             +NS      K+    N  D   +  YV+ P+R
Sbjct: 194 --TNSYYIYLTKENYPINIMDKANSFNYVICPIR 225


>gi|330803046|ref|XP_003289521.1| hypothetical protein DICPUDRAFT_35924 [Dictyostelium purpureum]
 gi|325080381|gb|EGC33939.1| hypothetical protein DICPUDRAFT_35924 [Dictyostelium purpureum]
          Length = 713

 Score = 37.5 bits (86), Expect = 3.7,   Method: Composition-based stats.
 Identities = 19/117 (16%), Positives = 40/117 (34%), Gaps = 5/117 (4%)

Query: 21  IERKNTIPVSCHVLLQANDGLLEIKASGPEIEITGAIPASVDVCGSITVSAHLLYDIVRK 80
           +      P+  ++ + ++DG + IK S         +  ++D    I   A    +IV K
Sbjct: 165 LSNDPLYPIPSNIFITSSDGAISIKGSYFSYN-ESLVSVTIDGSPCILSQAPTFNEIVCK 223

Query: 81  LQDGAQISFFKENELGTEVNISHGDSNFYLQSFPESEFPSTKEEEYVYSFELASSVL 137
           L          + ++   + I    S F L+S          +     S   + ++ 
Sbjct: 224 LSS----FNSTKTKVPAIITIDQETSKFTLESLLPGTENIITDCPNSCSNHGSCNLD 276


>gi|302307208|ref|NP_983787.2| ADL309Wp [Ashbya gossypii ATCC 10895]
 gi|299788889|gb|AAS51611.2| ADL309Wp [Ashbya gossypii ATCC 10895]
          Length = 259

 Score = 37.5 bits (86), Expect = 3.8,   Method: Composition-based stats.
 Identities = 27/151 (17%), Positives = 55/151 (36%), Gaps = 14/151 (9%)

Query: 194 KMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVI 253
                I+   A  + L +++       + L E      I   S+ +  ID +F     + 
Sbjct: 73  NSLGKILRCGANEDSLTLVAEDSPDTMLVLFEDTKRERISEYSLKLMEIDADFLEIDQI- 131

Query: 254 PCSNDKELRVNCTNLRQAVDRVSIMSS-----VRIQAVKL----SLSSDKLCMTVDNPDM 304
               D  + +      + +  ++ +S      V  + +K        S  + +     D+
Sbjct: 132 --DYDTTVHMPSAEFAKIIRDLNQLSDSLNVVVTKETIKFISEGDFGSGSVIVKPR-TDV 188

Query: 305 GKAIESMNVYYNECPMDICFNYKYLLEIIDN 335
            +  +S+ V     P+D+ F  KYLL+II  
Sbjct: 189 ERPEDSVKVELE-KPVDLTFGSKYLLDIIKA 218


>gi|210616832|ref|ZP_03291256.1| hypothetical protein CLONEX_03477 [Clostridium nexile DSM 1787]
 gi|210149650|gb|EEA80659.1| hypothetical protein CLONEX_03477 [Clostridium nexile DSM 1787]
          Length = 400

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 54/393 (13%), Positives = 129/393 (32%), Gaps = 38/393 (9%)

Query: 2   KITVERSDILELLGHACRIIERKNTIPVSCHVLL-------QANDGLLEIKASGPEIEIT 54
           +  +   D+ E +  A   +        +  + L        A D    I A   +++  
Sbjct: 3   QFKMNSKDLAEAMKKASIALPVSKGKGENECIRLVINKKSKDAEDYRAVILAFNGKVQTI 62

Query: 55  GAIPAS--VDVCG--SITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYL 110
           GA+     +       I V+   L          A ++   E ++ +E  ++   S   L
Sbjct: 63  GALNIEEVITETDIPEINVNGRQLLA---SANAFAAMNAAIELKIDSEAVVTGAGSRVAL 119

Query: 111 QSFPESEFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLK 170
           +   +S       E  +   E++       +        TE+  + ++ +   I+    +
Sbjct: 120 K-LGKSVMALKASETVMQEVEISGEEFTQFMNFGISCFGTEKGMHGIHCVAVRIDASANR 178

Query: 171 LCAVATDGHRLAVAEVDI----------VAQIAKMPSIIVPRKAVGEILRILSSKDSS-- 218
           + AV+T+G+R A AE              +Q  +  S   P        +IL S   +  
Sbjct: 179 IFAVSTNGYRCAYAETTNIKMYSLKKPQNSQEDEDTSAGAPAITAIVEGKILKSAIQNFL 238

Query: 219 ----VKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLRQAVDR 274
               V + + +  + +   +  + +   + ++P    +     +K L        + +  
Sbjct: 239 GKKKVYLGIDDKMLRIRSGTDVVMILQQEVDYPLEPMLKLIEGNKSLGRWKAPYIKVLQS 298

Query: 275 VSIMSSVRIQAVKLSL-SSDKLCMTVDNPDMGKAIESMNVYYNECPMDICFNYKYLLEII 333
           +S+   + + ++ L +   D   +     D G    S+          +  +  +L   +
Sbjct: 299 LSV-CEIAMDSMWLEICKEDDNHILFRGKD-GVTKTSIFCAMEGEIQRVVLDESHLKNAL 356

Query: 334 DNISSDEVVDDEVVFRLDSSNSSVFIRGKDKDS 366
              S ++    +++           IR K+ D 
Sbjct: 357 SVFSKEQ----DIIVESVGERRPFVIRQKEDDP 385


>gi|284162355|ref|YP_003400978.1| proliferating cell nuclear antigen PcnA [Archaeoglobus profundus
           DSM 5631]
 gi|284012352|gb|ADB58305.1| proliferating cell nuclear antigen PcnA [Archaeoglobus profundus
           DSM 5631]
          Length = 245

 Score = 37.1 bits (85), Expect = 4.5,   Method: Composition-based stats.
 Identities = 24/177 (13%), Positives = 59/177 (33%), Gaps = 13/177 (7%)

Query: 60  SVDVCGSITVSAHLLYDIVRKLQDGAQISFFKENELGTEVNISHGDSNFYLQSFPES--- 116
           ++D   +I V  + + DI++ ++    +    E+E  + + I  G   + +     S   
Sbjct: 60  TIDEEKTIGVDVNRVNDILKTVKKKELVELKVEDE--SILKIKFGSVEYSVALIDPSAIR 117

Query: 117 EFPSTKEEEYVYSFELASSVLKNLVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVAT 176
           + P   E E      L +   K  ++           R    G +     +         
Sbjct: 118 KEPKIPELELPAKVVLDAGEFKKAIQAADKIADHVVFRTDETGFYIEAKGD--------I 169

Query: 177 DGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIE 233
           D     + E++++    +    +   + + E ++I  S D        +  + L  +
Sbjct: 170 DKIVFHMGEMELIEFNKEKARSMFSVEYLKEFVKIAGSGDILTIYLGDDYPVRLIFD 226


>gi|327398568|ref|YP_004339437.1| DNA methylase N-4/N-6 domain-containing protein [Hippea maritima
           DSM 10411]
 gi|327181197|gb|AEA33378.1| DNA methylase N-4/N-6 domain protein [Hippea maritima DSM 10411]
          Length = 380

 Score = 37.1 bits (85), Expect = 4.8,   Method: Composition-based stats.
 Identities = 18/81 (22%), Positives = 39/81 (48%), Gaps = 7/81 (8%)

Query: 257 NDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDNPDMGKAIESMNVYYN 316
           +++ + +N +   + +D  +++    IQ +K+ L   K  +T  N D    I  +N+  N
Sbjct: 20  SNRSIIINKSKFLEILD--NLIRIQNIQELKIKLKELKSNLTSTNKDK---IGILNIDKN 74

Query: 317 ECPMDICFNYKYLLEIIDNIS 337
              ++I +N  YL+  +  I 
Sbjct: 75  GDTIEIKYN--YLINELTQIE 93


>gi|316961016|gb|EFV48151.1| DNA ligase 1 [Trichinella spiralis]
          Length = 237

 Score = 37.1 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMSVRLI 242
              I   I   P +  P K + E+L+   S + + +       ++IH    ++ +  R  
Sbjct: 138 HCHITPGIPLKPMLAFPSKGIEEVLKRFGSAEFACEWKYDGERAQIHFYDGTVKVFSRNQ 197

Query: 243 D---GEFPNYQNVIPC 255
           +   G++P+   +IP 
Sbjct: 198 ENHTGKYPDIVELIPK 213


>gi|290475022|ref|YP_003467906.1| hypothetical protein XBJ1_2007 [Xenorhabdus bovienii SS-2004]
 gi|289174339|emb|CBJ81133.1| Hypothetical bacteriophage protein [Xenorhabdus bovienii SS-2004]
          Length = 176

 Score = 37.1 bits (85), Expect = 5.1,   Method: Composition-based stats.
 Identities = 23/122 (18%), Positives = 43/122 (35%), Gaps = 11/122 (9%)

Query: 140 LVERTHFAMATEEIRYYLNGIFFHINEEDLKLCAVATDGHRLAVAEVDIVAQIAKMPSII 199
           L+      +A  + RYYL G+       +     VA    RL          I +    I
Sbjct: 7   LLRAALVCVAKNDPRYYLCGVHITPKYLESSNGFVA---FRLEHGINTRRKAIIQFHGKI 63

Query: 200 VPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDK 259
             +    E+    + +  +V   ++  R+          + ++DG FP+   VIP   + 
Sbjct: 64  PKKADTTEL--HFTKEPYAVHRDIAGVRVGFTA------LSMLDGRFPDLDRVIPKKVEN 115

Query: 260 EL 261
            +
Sbjct: 116 VI 117


>gi|50304235|ref|XP_452067.1| hypothetical protein [Kluyveromyces lactis NRRL Y-1140]
 gi|49641199|emb|CAH02460.1| KLLA0B12078p [Kluyveromyces lactis]
          Length = 258

 Score = 36.8 bits (84), Expect = 6.1,   Method: Composition-based stats.
 Identities = 25/128 (19%), Positives = 50/128 (39%), Gaps = 12/128 (9%)

Query: 1   MK----ITVERSDILELLGHACRIIERKNTIPVSCHVLLQAND----GLLEIK-ASGPEI 51
           MK    IT+  +D  + +    ++ +  N +     +   A      G + +K  +  + 
Sbjct: 131 MKYESYITMPSADFAKTVRDLSQLSDSINILVTKDTIKFAAEGDIGSGSIVVKPFTDLD- 189

Query: 52  EITGAIPASVDVCGSITVSAHLLYDIVR--KLQDGAQISFFKENELGTEVNISHGDSNFY 109
               +I  +++    +   A  L DI++   L D   I   +E     + +IS G+  FY
Sbjct: 190 HPESSIKVTIEKPVDLRFGAKYLNDIIKGSSLSDTITIKLSEEAPALFQFDISSGNLQFY 249

Query: 110 LQSFPESE 117
           L    + E
Sbjct: 250 LAPKFDEE 257


>gi|316971746|gb|EFV55486.1| DNA ligase 1 [Trichinella spiralis]
          Length = 825

 Score = 36.4 bits (83), Expect = 7.2,   Method: Composition-based stats.
 Identities = 15/76 (19%), Positives = 32/76 (42%), Gaps = 5/76 (6%)

Query: 185 EVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLS--ESRIHLNIESLSMSVRLI 242
              I   I   P +  P K + E+L+   S + + +       ++IH    ++ +  R  
Sbjct: 424 HCHITPGIPLKPMLAFPSKGIEEVLKRFGSAEFACEWKYDGERAQIHFYDGTVKVFSRNQ 483

Query: 243 D---GEFPNYQNVIPC 255
           +   G++P+   +IP 
Sbjct: 484 ENHTGKYPDIVELIPK 499


>gi|256027835|ref|ZP_05441669.1| hypothetical protein PrD11_07536 [Fusobacterium sp. D11]
 gi|289765787|ref|ZP_06525165.1| predicted protein [Fusobacterium sp. D11]
 gi|289717342|gb|EFD81354.1| predicted protein [Fusobacterium sp. D11]
          Length = 242

 Score = 36.4 bits (83), Expect = 7.7,   Method: Composition-based stats.
 Identities = 35/214 (16%), Positives = 76/214 (35%), Gaps = 27/214 (12%)

Query: 176 TDGHRLAVAEVDIVAQIAKMPSIIVPRKAVGEILRILSSKDSSVKVSLSESRIHLNIESL 235
           TD +RL   E     +     + +     + E+ +            L+  ++ + I + 
Sbjct: 51  TDTYRLFAVEDTDKERKGTDTANLYSITLLNELFKA------ETIAILNNGKLVIQIGTE 104

Query: 236 SMSVRLIDGEFPNYQNVIPC-SNDKELRVNCTNLRQAVDRVSIMSSVRIQAVK-LSLSSD 293
                 ++ +  N + VI        L+ +  N         ++   +    K      +
Sbjct: 105 ITEYEALNKKALNIKKVIESYEYTTFLKSSVVNKTTTDIVWKMLKLTKFDTRKYFIFKDN 164

Query: 294 KLCMTVDNPDMGKAIESMNVYYNECPMDICFN--YKYLLEIIDNISSDEVVDDEVVFRLD 351
           K+ +     +    I +    YN+  +DI FN   KY+     ++    + ++     L 
Sbjct: 165 KVRVEAYPNEDSTLILNDLFEYNKDNLDIKFNLNVKYI-----DLWLKYIKNEFFNISLS 219

Query: 352 SSNSSVFIRGKDKDSKNNKDNKVNAFYVLMPMRI 385
           +SNS++            K +  N  Y++MPMR+
Sbjct: 220 TSNSAI------------KFSNCNITYIVMPMRV 241


>gi|313113562|ref|ZP_07799150.1| hypothetical protein HMPREF9436_00999 [Faecalibacterium cf.
           prausnitzii KLE1255]
 gi|310624077|gb|EFQ07444.1| hypothetical protein HMPREF9436_00999 [Faecalibacterium cf.
           prausnitzii KLE1255]
          Length = 108

 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 13/58 (22%), Positives = 24/58 (41%), Gaps = 1/58 (1%)

Query: 285 AVKLSLSSDKLCMTVDNPDMGKAIESMNVY-YNECPMDICFNYKYLLEIIDNISSDEV 341
            V + L S           + +  E  +     E  + I FN ++L E++ ++  DEV
Sbjct: 20  GVIMDLESGGTGRASMCSTIAQMNEEFSFNGKLEEHLRIGFNLEFLSEVLKSMEGDEV 77


>gi|126652742|ref|ZP_01724894.1| hypothetical protein BB14905_21403 [Bacillus sp. B14905]
 gi|126590431|gb|EAZ84550.1| hypothetical protein BB14905_21403 [Bacillus sp. B14905]
          Length = 215

 Score = 36.4 bits (83), Expect = 8.3,   Method: Composition-based stats.
 Identities = 15/105 (14%), Positives = 38/105 (36%), Gaps = 21/105 (20%)

Query: 244 GEFPNYQNVIP--CSNDKELRVNCTNLRQAVDRVSIMSSVRIQAVKLSLSSDKLCMTVDN 301
             +PN   ++    +      ++  +  Q +  +  + + +  A+K S ++D + ++V  
Sbjct: 83  YNYPNLSGLLEVGENKQSSFSLSKEDALQLIPAIKFIKANKFLAMKFSFTNDSIVLSVPG 142

Query: 302 PDMGKAIESMNVYYNECPMDI----------CFNYKYLLEIIDNI 336
                    +N+  +    DI           F   YLL  ++  
Sbjct: 143 ---------INLKLDGFEFDINQHKDAENTLAFTPGYLLNALEAF 178


>gi|256810389|ref|YP_003127758.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus fervens
           AG86]
 gi|256793589|gb|ACV24258.1| proliferating cell nuclear antigen PcnA [Methanocaldococcus fervens
           AG86]
          Length = 242

 Score = 36.4 bits (83), Expect = 8.9,   Method: Composition-based stats.
 Identities = 40/202 (19%), Positives = 78/202 (38%), Gaps = 30/202 (14%)

Query: 160 IFFHINEEDLKLCAVATDGHRLAVAEVDI-----VAQIAKMPSIIVPRKAVGEILRILSS 214
           I F ++EE ++  A A D   +A+  ++I         A    I +  +A  +++    S
Sbjct: 21  ICFEVDEEGVR--ASAMDPSHVALVSLEIPRLAFEEYEADNHEIGIDLEAFKKVMNRAKS 78

Query: 215 KDSSVKVSLSE-----SRIHLNIESLSMSVRLIDGEFPNYQNVIPCSNDKELRVNCTNLR 269
           KD  + + L E     + I  N      S+ L+D    +   V        + +     +
Sbjct: 79  KDRLI-LELDEEKNKLNVIFENTGKRKFSLALLDLS-ASSVKVPEIEYPNVIMIKGDAFK 136

Query: 270 QAVDRVSIMSSVRIQAVKLSLSSDKLCMTVD------NPDMGK---AIESMNVYYNECPM 320
           +A+    + S      V L +  +K  +         N +  K   AI S++V       
Sbjct: 137 EALKDADLFSD----YVILKVDEEKFVVHAKGDLNDFNAEFEKDSSAIISLDVK---EEA 189

Query: 321 DICFNYKYLLEIIDNISSDEVV 342
              FN  YL +++  +SS +++
Sbjct: 190 KSAFNLDYLKDMVKGVSSGDII 211


  Database: nr
    Posted date:  May 22, 2011 12:22 AM
  Number of letters in database: 999,999,966
  Number of sequences in database:  2,987,313
  
  Database: /data/usr2/db/fasta/nr.01
    Posted date:  May 22, 2011 12:30 AM
  Number of letters in database: 999,999,796
  Number of sequences in database:  2,903,041
  
  Database: /data/usr2/db/fasta/nr.02
    Posted date:  May 22, 2011 12:36 AM
  Number of letters in database: 999,999,281
  Number of sequences in database:  2,904,016
  
  Database: /data/usr2/db/fasta/nr.03
    Posted date:  May 22, 2011 12:41 AM
  Number of letters in database: 999,999,960
  Number of sequences in database:  2,935,328
  
  Database: /data/usr2/db/fasta/nr.04
    Posted date:  May 22, 2011 12:46 AM
  Number of letters in database: 842,794,627
  Number of sequences in database:  2,394,679
  
Lambda     K      H
   0.314    0.155    0.416 

Lambda     K      H
   0.267   0.0473    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,604,142,675
Number of Sequences: 14124377
Number of extensions: 286974865
Number of successful extensions: 787649
Number of sequences better than 10.0: 2675
Number of HSP's better than 10.0 without gapping: 4500
Number of HSP's successfully gapped in prelim test: 631
Number of HSP's that attempted gapping in prelim test: 759568
Number of HSP's gapped (non-prelim): 5603
length of query: 385
length of database: 4,842,793,630
effective HSP length: 141
effective length of query: 244
effective length of database: 2,851,256,473
effective search space: 695706579412
effective search space used: 695706579412
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.3 bits)
S2: 83 (36.4 bits)